Citrus Sinensis ID: 006825

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630
Protein Sequence
MSKTGGGGDEEDEDECFYESLDRLVTSSSNSCTTSSSSDSEPDNPNRNPDSPNYEFRVPKFPMGVSTKYDVWISEPISVSERRSRLLREMGLSHDRALARAKPGSEVQDRGMGNGDFGRSASTDQLTKQDQVCSSSSSNVRDGGVSVTIVRSKSDGAKSSSGCDRDGSGRHRHQLSVCSPSILSIHCSSLDSPRVNNGNSNDNDSSNVSYNVDQNQSVLVRKSPSGNSNNGSSPVASAALSNKPPTGRNCKRMDESRGDSMSINGNGNYIGNSGEVVEDFDGNGTAGVAEQGCLIKNLDNGKEFVVNEIQEDGTWKKVKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQNVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYDISLVDRLMLRFAYGAFLNVK
Secondary Structure (PSIPRED)
cccccccccccccccccHHccccccccccccccccccccccccccccccccccccccccccccccccccEEEccccccHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccEEcccccccccccccccEEEEEcccccEEEEccccccccEEEEEEcccccEEEEEcccccccccHHHHHHHHHHccccccccccccccccccccccccccccEEEEEEEEEEEcccccEEEEccccccccccccccEEccccccccEEEEcccccEEEEEcccccEEccccEEcEEEccccccEEEEEEcccccEEEEccccccEEEEEcccccccccccccccccccccEEEEEEcccccccccccccccEEEEcccccccccccccccccccccccccccccEEEEEcccccEEEEEEcccccEEEEcccccEEEEEcccccEEEEEccccEEEEEEccEEEEEccccEEEcc
Secondary Structure Prediction (SSPRO)
cccccccccccccccHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccEEccccccHHHHHHHHHHHccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccEEEEccccccEEEEEEcccccccccHcccccccEEEHHHHcccccccHHHHHHHHHccccccccccccccccccccccccccccccHHHcHHHHHHHHHccccccccccccccccccccccccccccccccccccccEEEEEccccccEEHHHEEEEEEEccccccEEEEEEcccccEEEEcccccEEEEEEEEEcccccHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccEEEEcccccHHHEEccccccEEEEcccccEEEEEEccccHHEEEcccccHEHHHHHHHHHHcHHHHHEccc
Coil and Loop (DISEMBL)
msktggggdeededecFYESLDRLVtsssnscttssssdsepdnpnrnpdspnyefrvpkfpmgvstkydvwisepisvSERRSRLLREMGLSHDRALarakpgsevqdrgmgngdfgrsastdqltkqdqvcsssssnvrdggVSVTIVRsksdgaksssgcdrdgsgrhrhqlsvcspsilsihcssldsprvnngnsndndssnvsynvdqnqsvlvrkspsgnsnngsspvasaalsnkpptgrnckrmdesrgdsmsingngnyignsgevvedfdgngtagvAEQGCliknldngKEFVVNEiqedgtwkkvkevgtgrqlTIEEFEMCVGHSPIVQELMRRqnveegnkdsfdlnnngssgggmkskkkgswFKSIRTVASSvtghkerrssderdtssekggrrsssatddsqdvsfhgqerVRVRQYGKSCKDLTALYKCQeiqahngsiwsIKFSLDgrylasagedCVIHVWQVVESERKGELLEKQEDGHLNMLLLangspeptslspkhldnhlekkrrgrsinrkslsldhmvvpetvfalsdkpicsfqghlddvldlswsksQHLLSSSMDKTVRLWHLssktclkifshsdydisLVDRLMLRFAYGAFLNVK
Flexible Loop (DISEMBL)
msktggggdeedeDECFYESLDRLVTSssnscttssssdsepdnpnrnPDSPNYEFRVPKFPMGVSTKYDVWISEPISVSERRSRLLREMGLshdralarakpgsevqdrgmgNGDFGRSASTDQLTKQDqvcsssssnvrdggvsvtivrsksdgaksssgcdrdgsgrhrHQLSVCSPSILSIHCSSLDSPRVNNGNSNDNDSSNVSYNVDQNQSVLVRKSpsgnsnngsspvasaalsnkpptgrnckrmdesrgdsmsinGNGNYIGNSGEVVEDFDGNGTAGVAEQGCLIKNLDNGKEFVVneiqedgtwkkvkevGTGRQLTIEEFEMCVGHSPIVQELMRRQNVEegnkdsfdlnnngssgggmkskkkgswfkSIRTVassvtghkerrssderdtssekggrrsssatddsqdvsfhgqervrvrqYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSpeptslspkhldnhlekkrrgrsinrkslsldhMVVPETVFALSDKPICSFQGHLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYDISLVDRLMLRFAYGAFLNVK
Low Complexity Region (SEG)
MSKTggggdeededeCFYESLDRLVtsssnscttssssdsepdnpnrnpdspnYEFRVPKFPMGVSTKYDVWISEPISVserrsrllreMGLSHDRALARAKPGSEVQDRGMGNGDFGRSASTDQLTKQDQVCSSSSSNVRDGGVSVTIVRSKSDGAKsssgcdrdgsgrhrhQLSVCSPSILSIHCSSLDSPRvnngnsndndssnvsynvdqnqsvLVRKspsgnsnngsspvasaaLSNKPPTGRNCKRMDESRGDSMsingngnyignsgEVVEDFDGNGTAGVAEQGCLIKNLDNGKEFVVNEIQEDGTWKKVKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQNVEEGNKDSFDLNNNgssgggmkskkkgswfksIRTVASSVTGHKerrssderdtsseKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDlswsksqhllsssMDKTVRLWHLSSKTCLKIFSHSDYDISLVDRLMLRFAYGAFLNVK
Disordered region (IsUnstruct)
*******************************************************FRVPKFPMGVSTKYDVWISEPI***********************************************************************************************************************************************************************************************YIGNSGEVVEDFDGNGTAGVAEQGCLIKNLDNGKEFVVNEIQEDGTWKKVKEVGTGRQLTIEEFEMCVGHSPIVQE**************************************************************************************VRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVE*******************************************************LDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYDISLVDRLMLRFAYGAFLN**
Disordered Region (DISOPRED)
***********DEDECFYESLD**************************************FPMGVSTKYD*****************************************************************************************************************************************************************************************************************************GCLIKNLDNGKEFVVNEIQEDGTWKKVKEVGTGRQLTIEEFEMCVGHSPIVQEL********************************SWFKSIRTVASSVTGHKER********************TDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGE*******G*LNMLL**************************************MVVPETVFALSDKPICSFQGHLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYDISLVDRLMLRFAYGAFLNVK
Disordered Region (DISEMBL)
**************ECFYESLDRL************************PDSPNYEFRVPKFPMGVSTKYDVWISEPISVSERRSRLLREMGLSHD*************DRGMGNGDFGRSAS********************GGVSVTIVRS*********************QLSVCSPSILSIHCSSLDSPRVNNGNSNDNDSSNVSYNVDQNQSVLVRK**************************NCKRMDESRGDSMSINGNGNYIGNSGEVVEDFDGNGTAGVAEQGCLIKNLDNGKEFVVNEIQEDGTWKKVKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQNVEEGNKDSFDLNNNGS************WFKSIRTV***************************************HGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYDISLVDRLMLRFAYGAFLNVK
Disordered Region (DISPRO)
**************ECFYESLDRLV*****************************EFRVPKFPMGVSTKYDVWISEPISVSERRSRLLREMGLSH**************************************************VSVT****KS***********************************************************************************************************************************AGVAEQGCLIKNLDNGKEFVVNEIQEDGTWKKVKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQ*****************************************************************************GQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKG****************************************************HMVVPETVFALSDKPICSFQGHLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYDISLVDRLMLRFAYGAFLNVK
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
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Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSKTGGGGDEEDEDECFYESLDRLVTSSSNSCTTSSSSDSEPDNPNRNPDSPNYEFRVPKFPMGVSTKYDVWISEPISVSERRSRLLREMGLSHDRALARAKPGSEVQDRGMGNGDFGRSASTDQLTKQDQVCSSSSSNVRDGGVSVTIVRSKSDGAKSSSGCDRDGSGRHRHQLSVCSPSILSIHCSSLDSPRVNNGNSNDNDSSNVSYNVDQNQSVLVRKSPSGNSNNGSSPVASAALSNKPPTGRNCKRMDESRGDSMSINGNGNYIGNSGEVVEDFDGNGTAGVAEQGCLIKNLDNGKEFVVNEIQEDGTWKKVKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQNVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYDISLVDRLMLRFAYGAFLNVK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	630	2.2.26 [Sep-21-2011]
Q498F0	912	WD repeat-containing prot	N/A	no	0.438	0.302	0.277	3e-21
Q9XSC3	912	WD repeat-containing prot	yes	no	0.425	0.293	0.275	4e-21
Q6LA54	933	Uncharacterized WD repeat	yes	no	0.309	0.209	0.308	3e-19
Q03177	834	WD repeat-containing prot	yes	no	0.268	0.202	0.297	1e-16
Q5JSH3	913	WD repeat-containing prot	yes	no	0.098	0.067	0.522	9e-14
Q6NVE8	915	WD repeat-containing prot	yes	no	0.098	0.067	0.522	9e-14
Q9R037	908	WD repeat-containing prot	yes	no	0.098	0.068	0.522	1e-13
O60136	586	Uncharacterized WD repeat	no	no	0.173	0.186	0.304	7e-13
P32330	852	2-deoxy-glucose resistant	no	no	0.230	0.170	0.305	4e-11
Q8YTC2	1258	Uncharacterized WD repeat	no	no	0.342	0.171	0.257	3e-06

>sp|Q498F0|WDR44_XENLA WD repeat-containing protein 44 OS=Xenopus laevis GN=wdr44 PE=2 SV=1

 Score =  103 bits (258), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 100/360 (27%), Positives = 150/360 (41%), Gaps = 84/360 (23%)

Query: 293 CLIKNLDNGKEFVVNEIQEDGTWKKVKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQ--- 349
            +IKNLD G+E                       L++ E ++  G +P+   +MRR    
Sbjct: 359 VMIKNLDTGEEI---------------------PLSLAEEKLPTGINPLTLYIMRRTKEY 397

Query: 350 --NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSE 407
             N    + D     ++ S   G K K+K +  K  + +  SV   K           +E
Sbjct: 398 VSNDAAQSDDEEKPQSHQSETDGGKLKQKTTQLK--KFLGKSVKRAKHL---------AE 446

Query: 408 KGGRRSSSATDDSQDVSFH------------GQERVRVRQYGKSCKDLTALYKCQEIQA- 454
           + G R+ +     +D  FH            G    R  ++ K+       Y  ++I+  
Sbjct: 447 EYGERAVNKVKSVRDEVFHTDQDDPSSSDDEGMPYTRPVKF-KAAHGFKGPYDFEQIKVV 505

Query: 455 ------HNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLL 508
                 H G++W++KFS  GR LASAG+D V+ +W          +L+   D   NM + 
Sbjct: 506 QDLSGEHVGAVWTMKFSHCGRLLASAGQDNVVRIW----------VLKNAFDYFNNMRIK 555

Query: 509 ANG----SPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQ 564
            N     SP P+  S   L++       G       +  D    P         P C ++
Sbjct: 556 YNTEGRVSPSPSQES---LNSSKSDTDGGVFSGTDDVDPDDKNAP-----FRQVPFCKYK 607

Query: 565 GHLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYDISLV-----DRLML 619
           GH  D+LDLSWSK+  LLSSSMDKTVRLWH+S + CL  F H D+  ++      DR  L
Sbjct: 608 GHTADLLDLSWSKNYFLLSSSMDKTVRLWHISRRECLCCFQHIDFVTAIAFHPRDDRYFL 667

Downstream effector for rab11. May be involved in vesicle recycling.
Xenopus laevis (taxid: 8355)

>sp|Q9XSC3|WDR44_BOVIN WD repeat-containing protein 44 OS=Bos taurus GN=WDR44 PE=1 SV=1

 Score =  103 bits (257), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 101/367 (27%), Positives = 148/367 (40%), Gaps = 99/367 (26%)

Query: 293 CLIKNLDNGKEFVVNEIQEDGTWKKVKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQ--- 349
            +IKNLD G+E                       L++ E ++  G +P+   +MRR    
Sbjct: 356 VMIKNLDTGEEI---------------------PLSLAEEKLPTGINPLTLHIMRRTKEY 394

Query: 350 --NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSE 407
             N    + D   L +  +   G + K+K +  K  + +  SV   K           +E
Sbjct: 395 VSNDAAQSDDEEKLQSQQTDTDGGRLKQKTTQLK--KFLGKSVKRAKHL---------AE 443

Query: 408 KGGRRSSSATDDSQDVSFH------------GQERVRVRQYGKSCKDLTALYKCQEIQA- 454
           + G R+ +     +D  FH            G    R  ++ K+       Y   +I+  
Sbjct: 444 EYGERAVNKVKSVRDEVFHTDQDDPSSSDDEGMPYTRPVKF-KAAHGFKGPYDFDQIKVV 502

Query: 455 ------HNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLL 508
                 H G++W++KFS  GR LASAG+D V+ +W           L+   D   NM + 
Sbjct: 503 QDLSGEHMGAVWTMKFSHCGRLLASAGQDNVVRIWA----------LKNAFDYFNNMRMK 552

Query: 509 ANG----SPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDK------ 558
            N     SP P+                  S+N      D  V   T     DK      
Sbjct: 553 YNTEGRVSPSPSQ----------------ESLNSSKSDTDTGVCSGTDEDPDDKNAPFRQ 596

Query: 559 -PICSFQGHLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYDISLV--- 614
            P C ++GH  D+LDLSWSK+  LLSSSMDKTVRLWH+S + CL  F H D+  ++    
Sbjct: 597 RPFCKYKGHTADLLDLSWSKNYFLLSSSMDKTVRLWHISRRECLCCFQHIDFVTAIAFHP 656

Query: 615 --DRLML 619
             DR  L
Sbjct: 657 RDDRYFL 663

Downstream effector for RAB11. May be involved in vesicle recycling.

Bos taurus (taxid: 9913)

>sp|Q6LA54|YF48_SCHPO Uncharacterized WD repeat-containing protein C3H5.08c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC3H5.08c PE=1 SV=2

 Score = 97.4 bits (241), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 76/246 (30%), Positives = 108/246 (43%), Gaps = 51/246 (20%)

Query: 385 TVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVS-----FHGQERVRVRQYGKS 439
           T+A++   + E R++D  + + E     SS  T D+Q ++      H       R     
Sbjct: 239 TLAATHDRYYEPRATDFPNLAHESSEPSSSRHTADAQSITNASVHLHNSSSPLNRTPSVI 298

Query: 440 CKDL-TALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQ 498
              L  A+       + N +IW++KFS DGRYLA  G+D ++ +W V++SE         
Sbjct: 299 SDTLAVAITSNSSSNSSNNAIWAMKFSRDGRYLAVGGQDRILRIWAVLDSE--------- 349

Query: 499 EDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDK 558
              H   +     S +P                     N   L+L   V        S+ 
Sbjct: 350 ---HARSVASETCSSDP---------------------NNPKLNLKAPV-------FSEA 378

Query: 559 PICSFQGHLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYDISLV---- 614
           PI  + GH  D+LDLSWS++  LLSSSMDKT RLWH   K CL  F HSD+  S+     
Sbjct: 379 PIREYAGHTADILDLSWSRNNFLLSSSMDKTARLWHPVRKDCLCCFEHSDFVTSIAFHPK 438

Query: 615 -DRLML 619
            DR  L
Sbjct: 439 DDRFFL 444

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q03177|YMZ2_YEAST WD repeat-containing protein YMR102C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YMR102C PE=1 SV=1

 Score = 89.0 bits (219), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 59/198 (29%), Positives = 99/198 (50%), Gaps = 29/198 (14%)

Query: 431 VRVRQYGKSCKDLTALYKCQEIQAHNG---------------SIWSIKFSLDGRYLASAG 475
           +++ +  K+ K    L+  QE+ A+ G               +IWS KFS DG+++A+  
Sbjct: 133 IKMLKRRKNLKQFRRLFLAQELMAYEGETVTSTSKSSEPTSKAIWSTKFSRDGKFMATGS 192

Query: 476 EDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKH----LDNHLEKKR 531
           +D  I +W+V+     G  +E+ E   L+    +N      S+  K     L+N  EK+ 
Sbjct: 193 KDGKIRIWKVI-----GSPVERAE---LDSSAESNKEARAKSMRIKQQVSSLNNPKEKQF 244

Query: 532 RGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKSQHLLSSSMDKTVR 591
              +  +       + +   VF  +  P+  ++ H+ DVLD++WSK+  +LS+SMDKTV+
Sbjct: 245 LDSATEKYEEKEKLLNLYAPVFHPT--PLRLYKEHVQDVLDINWSKNNFILSASMDKTVK 302

Query: 592 LWHLSSKTCLKIFSHSDY 609
           LWH   K  LK F H D+
Sbjct: 303 LWHPDRKNSLKTFIHPDF 320

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q5JSH3|WDR44_HUMAN WD repeat-containing protein 44 OS=Homo sapiens GN=WDR44 PE=1 SV=1

 Score = 79.3 bits (194), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 35/67 (52%), Positives = 45/67 (67%), Gaps = 5/67 (7%)

Query: 558 KPICSFQGHLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYDISLV--- 614
           +P C ++GH  D+LDLSWSK+  LLSSSMDKTVRLWH+S + CL  F H D+  ++    
Sbjct: 598 RPFCKYKGHTADLLDLSWSKNYFLLSSSMDKTVRLWHISRRECLCCFQHIDFVTAIAFHP 657

Query: 615 --DRLML 619
             DR  L
Sbjct: 658 RDDRYFL 664

Downstream effector for RAB11. May be involved in vesicle recycling.

Homo sapiens (taxid: 9606)

>sp|Q6NVE8|WDR44_MOUSE WD repeat-containing protein 44 OS=Mus musculus GN=Wdr44 PE=1 SV=1

 Score = 79.3 bits (194), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 35/67 (52%), Positives = 45/67 (67%), Gaps = 5/67 (7%)

Query: 558 KPICSFQGHLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYDISLV--- 614
           +P C ++GH  D+LDLSWSK+  LLSSSMDKTVRLWH+S + CL  F H D+  ++    
Sbjct: 600 RPFCKYKGHTADLLDLSWSKNYFLLSSSMDKTVRLWHISRRECLCCFQHIDFVTAIAFHP 659

Query: 615 --DRLML 619
             DR  L
Sbjct: 660 RDDRYFL 666

Downstream effector for RAB11. May be involved in vesicle recycling.

Mus musculus (taxid: 10090)

>sp|Q9R037|WDR44_RAT WD repeat-containing protein 44 OS=Rattus norvegicus GN=Wdr44 PE=1 SV=1

 Score = 79.0 bits (193), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 35/67 (52%), Positives = 45/67 (67%), Gaps = 5/67 (7%)

Query: 558 KPICSFQGHLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYDISLV--- 614
           +P C ++GH  D+LDLSWSK+  LLSSSMDKTVRLWH+S + CL  F H D+  ++    
Sbjct: 593 RPFCKYKGHTADLLDLSWSKNYFLLSSSMDKTVRLWHISRRECLCCFQHIDFVTAIAFHP 652

Query: 615 --DRLML 619
             DR  L
Sbjct: 653 RDDRYFL 659

Downstream effector for RAB11. May be involved in vesicle recycling.

Rattus norvegicus (taxid: 10116)

>sp|O60136|YNS5_SCHPO Uncharacterized WD repeat-containing protein C18H10.05 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC18H10.05 PE=4 SV=1

 Score = 76.3 bits (186), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 46/151 (30%), Positives = 71/151 (47%), Gaps = 42/151 (27%)

Query: 458 SIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTS 517
           S+W+ + S  G+YLA+AG+D +I VW+V+E+  + E L K+              P+   
Sbjct: 188 SVWASEISKSGKYLATAGKDAIIRVWKVIETPERRETLLKE-------------GPQ--- 231

Query: 518 LSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSK 577
                                   S      P ++F    +P+    GH  +VL +SWSK
Sbjct: 232 ------------------------SCGRFFTPSSIF--EPEPVLECVGHNAEVLSISWSK 265

Query: 578 SQHLLSSSMDKTVRLWHLSSKTCLKIFSHSD 608
           +  LL+SS D+TVRLWH  S   L +F H++
Sbjct: 266 NDFLLTSSADRTVRLWHPKSTKSLAVFRHNE 296

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|P32330|DGR2_YEAST 2-deoxy-glucose resistant protein 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=DGR2 PE=1 SV=1

 Score = 70.5 bits (171), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 55/180 (30%), Positives = 78/180 (43%), Gaps = 35/180 (19%)

Query: 458 SIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDG-------------HLN 504
           SI    FS DG+Y+    +D  +H+W+V+ S  K   + + E               HL 
Sbjct: 175 SICCCTFSHDGKYMVIGCKDGSLHLWKVINSPVKRSEMGRSEKSVSASRANSLKIQRHLA 234

Query: 505 MLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQ 564
            +   NGS     L P         +  G S   K L L   V    VF +       F 
Sbjct: 235 SISSHNGSISSNDLKP-------SDQFEGPS---KQLHLYAPVFYSDVFRV-------FM 277

Query: 565 GHLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYDISLV-----DRLML 619
            H  D+LD +WSK+  L+++SMDKT +LWH   K  LK F H D+  S +     DR ++
Sbjct: 278 EHALDILDANWSKNGFLITASMDKTAKLWHPERKYSLKTFVHPDFVTSAIFFPNDDRFII 337

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q8YTC2|Y2800_NOSS1 Uncharacterized WD repeat-containing protein alr2800 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr2800 PE=4 SV=1

 Score = 53.9 bits (128), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 67/260 (25%), Positives = 109/260 (41%), Gaps = 44/260 (16%)

Query: 385  TVASSVTGHKER-----RSSDERDTSSEKGGRRSSSATDDSQDV-SFHGQERVRVRQY-- 436
            T+ASS   H  +     +    R   S  G  RS + + D Q + S  G   +++  Y  
Sbjct: 782  TLASSAADHTIKLWDVSQGKCLRTLKSHTGWVRSVAFSADGQTLASGSGDRTIKIWNYHT 841

Query: 437  GKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLE 496
            G+  K             H  S++SI +S D + L S   D  I +W       +  +  
Sbjct: 842  GECLKTYIG---------HTNSVYSIAYSPDSKILVSGSGDRTIKLWDC-----QTHICI 887

Query: 497  KQEDGHLNMLLLANGSPEPTSLSPKHLDN--HLEKKRRGRSINRK----------SLSLD 544
            K   GH N +     SP+  +L+   LD    L   R G+ +             + S D
Sbjct: 888  KTLHGHTNEVCSVAFSPDGQTLACVSLDQSVRLWNCRTGQCLKAWYGNTDWALPVAFSPD 947

Query: 545  HMVVP----ETVFALSD----KPICSFQGHLDDVLDLSWSK-SQHLLSSSMDKTVRLWHL 595
              ++     +    L D    K I S +GH D +  +++S  SQ L S+S D +VRLW++
Sbjct: 948  RQILASGSNDKTVKLWDWQTGKYISSLEGHTDFIYGIAFSPDSQTLASASTDSSVRLWNI 1007

Query: 596  SSKTCLKI-FSHSDYDISLV 614
            S+  C +I   H+D+  ++V
Sbjct: 1008 STGQCFQILLEHTDWVYAVV 1027

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	630
449446949	918	PREDICTED: WD repeat-containing protein	0.896	0.615	0.606	0.0
225461381	880	PREDICTED: WD repeat-containing protein	0.855	0.612	0.632	0.0
255587360	944	WD-repeat protein, putative [Ricinus com	0.869	0.580	0.590	1e-171
18400779	883	transducin/WD40 domain-containing protei	0.830	0.592	0.528	1e-153
224117222	882	predicted protein [Populus trichocarpa]	0.517	0.369	0.805	1e-151
224128378	799	predicted protein [Populus trichocarpa]	0.519	0.409	0.791	1e-148
297796289	830	WD-40 repeat family protein [Arabidopsis	0.506	0.384	0.722	1e-133
15239575	825	transducin/WD40 domain-containing protei	0.515	0.393	0.704	1e-133
297834414	885	WD-40 repeat family protein [Arabidopsis	0.490	0.349	0.733	1e-130
356542264	766	PREDICTED: WD repeat-containing protein	0.469	0.386	0.709	1e-124

>gi|449446949|ref|XP_004141232.1| PREDICTED: WD repeat-containing protein 44-like [Cucumis sativus] gi|449498657|ref|XP_004160597.1| PREDICTED: WD repeat-containing protein 44-like [Cucumis sativus]

 Score =  648 bits (1672), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 367/605 (60%), Positives = 443/605 (73%), Gaps = 40/605 (6%)

Query: 16  CFYESLDRLVTSSSNSCTTSSSS-DSEPDNPNRNPDSPNYEFRVPKFPMGVSTKYDVWIS 74
           CFYESLDR+ +S S S + S    DS  ++PN + + P   F +PKFPM VS  YD+WIS
Sbjct: 14  CFYESLDRIASSGSCSTSNSDDDRDSIVNSPNYDSEHP---FPIPKFPMAVSN-YDIWIS 69

Query: 75  EPISVSERRSRLLREMGLSHDRALARAKPGSEVQDRGMGNGDFGRSASTDQLTKQDQVCS 134
           EP SV ERRSRLLREMGLS D +L+RA    E+  +  G GDFGRS S+D LT Q Q   
Sbjct: 70  EPASVLERRSRLLREMGLSGDPSLSRANTALELDHKEKGVGDFGRSVSSDYLTSQQQQPP 129

Query: 135 SSSSNVRDGGVSVTIVRSKSDGAKSSSGCDRDGSGRHRHQLSVCSPSILSIHCSSLDSPR 194
           +             I+RSKSDG   S+ C+R+ S       S  S S  +  C+   S  
Sbjct: 130 A-------------IIRSKSDG---SADCNRNMSS------SQASGSDTNNQCN-YSSSI 166

Query: 195 VNNGNSNDNDSSNVSYNVDQNQSVLVRKSPSGNSNNGSSPVASAALSNKPPTGRNCKRMD 254
            +    + +  +  + +   N++ +V KS S  S+ G+  V+ AA  +KPP+G+NC+  D
Sbjct: 167 SSPSILSFHSVNETTTSFANNRNRVVVKSRSCKSD-GAPSVSFAASQHKPPSGKNCRWAD 225

Query: 255 ESRGDSMSINGNGN----YIGNSG----EVVEDFDGNGTAGVAEQGCLIKNLDNGKEFVV 306
           ESR DS+ +N N +     +  +G    EV  D   + +  V E+ C IK+LDNGKEFVV
Sbjct: 226 ESRSDSLVVNANSDPDPSLMSQNGVNRREVSGDSVCSTSGKVNEEACTIKDLDNGKEFVV 285

Query: 307 NEIQEDGTWKKVKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQNVEEGNKDSFDLNNNGS 366
           NEI EDG W K+KEVGTGRQLT+EEFEMCVGHSPIVQELMRRQNVE+G  D+ DLN NG 
Sbjct: 286 NEITEDGMWNKLKEVGTGRQLTMEEFEMCVGHSPIVQELMRRQNVEDGCNDNNDLNANGD 345

Query: 367 SGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFH 426
           +G   K KKKG WFKSI++VAS+V G KERRSSDERDTSSEKGGRRSSSATDDSQDVSFH
Sbjct: 346 TGSSSKLKKKGGWFKSIKSVASTVKGQKERRSSDERDTSSEKGGRRSSSATDDSQDVSFH 405

Query: 427 GQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVV 486
           G ERVRVRQYGKS K+L+ALYK QEIQAH+GSIW+IKFSLDG+YLASAGED +IHVWQVV
Sbjct: 406 GPERVRVRQYGKSSKELSALYKSQEIQAHSGSIWTIKFSLDGKYLASAGEDRIIHVWQVV 465

Query: 487 ESERKGELL-EKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGR-SINRKSLSLD 544
           ESE+KG+LL EK EDG+L+ L  AN SPEPTSLSP ++D+H EKKRRGR SI+RKS+SL+
Sbjct: 466 ESEKKGDLLMEKPEDGNLSFLFAANESPEPTSLSP-NVDSHHEKKRRGRSSISRKSVSLE 524

Query: 545 HMVVPETVFALSDKPICSFQGHLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIF 604
           H++VP+TVF LS+KPICSFQGHLD VLDLSWSKSQHLLSSSMDKTVRLWHLS+ +CLKIF
Sbjct: 525 HVIVPDTVFGLSEKPICSFQGHLDVVLDLSWSKSQHLLSSSMDKTVRLWHLSNNSCLKIF 584

Query: 605 SHSDY 609
           SHSDY
Sbjct: 585 SHSDY 589

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225461381|ref|XP_002282052.1| PREDICTED: WD repeat-containing protein 44-like [Vitis vinifera]

 Score =  642 bits (1656), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 398/629 (63%), Positives = 459/629 (72%), Gaps = 90/629 (14%)

Query: 1   MSKTGGGGDEEDEDECFYESLDRLVTSSSNSCTTSSSSDSEPDNPNRNPDSPNY----EF 56
           MSK    GDE+D+DECFYESLDR+++SS +  +++S  D++P+       SPNY     F
Sbjct: 1   MSK---AGDEDDDDECFYESLDRVLSSSCSCSSSNSDDDADPNA------SPNYASEHPF 51

Query: 57  RVPKFPMGVSTKYDVWISEPISVSERRSRLLREMGLSHDRALARAKPGSEVQDRGMGNGD 116
            +PKFP+G S KYD+WISEP S+ ERRSRLLREMGLS+D +L+R KP +   DR   NGD
Sbjct: 52  PIPKFPIGAS-KYDIWISEPSSIEERRSRLLREMGLSNDPSLSRVKPTA---DRS--NGD 105

Query: 117 FGRSASTDQLTKQDQVCSSSSSNVRDGGVSVTIVRSKSDGAKSSSGCDRDGSGRHRHQLS 176
            GRS S+D+L  Q             G   V I RSKSDGAK    C+           S
Sbjct: 106 IGRSVSSDRLAGQ-------------GEAGVVICRSKSDGAKDQ--CNS----------S 140

Query: 177 VCSPSILSIHCSSLDSPRVNNGNSNDNDSSNVSYNVDQNQSVLVRKSPSGNSNNGSSPVA 236
           VCSP ILSI CS +                        N S LV      +S +  SP+A
Sbjct: 141 VCSPPILSI-CSVV------------------------NNSKLVNSR---SSGSNGSPIA 172

Query: 237 SAALS--NKPPTGRNCKRMDESRGDSM---------SINGNGNYIGNSGEVVEDFDGNGT 285
           +AA +  NKPPTG+ C+R+DE+RGDS          S +G+GN  G  GE  ED D N  
Sbjct: 173 NAASASPNKPPTGKMCRRVDETRGDSTKSEPSFGRNSFSGSGN--GTGGECDEDSDCNVV 230

Query: 286 AGVA--EQGCLIKNLDNGKEFVVNEIQEDGTWKKVKEVGTGRQLTIEEFEMCVGHSPIVQ 343
           A     +Q C IKNLDNGKEFVVNE++EDG W K+KEVGT RQLT+EEFEMCVGHSPIVQ
Sbjct: 231 ARTVPHDQVCTIKNLDNGKEFVVNELREDGMWNKLKEVGTDRQLTMEEFEMCVGHSPIVQ 290

Query: 344 ELMRRQNVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERD 403
           ELMRRQNVEEGNKD+ D+N NG  GGG K KKKG WFKSIR+VASSVTGH+ERRSSDERD
Sbjct: 291 ELMRRQNVEEGNKDNLDINVNGGVGGGSKLKKKGGWFKSIRSVASSVTGHRERRSSDERD 350

Query: 404 TSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIK 463
           TSSEKGGRRSSSATDDSQ+VSFHG ER+RVRQYGKSCK+LTALYK QEIQAHNGSIWSIK
Sbjct: 351 TSSEKGGRRSSSATDDSQEVSFHGPERIRVRQYGKSCKELTALYKSQEIQAHNGSIWSIK 410

Query: 464 FSLDGRYLASAGEDCVIHVWQVVESERKGELL-EKQEDGHLNMLLLANGSPEPTSLSPKH 522
           FSLDGRYLASAGEDCVIHVWQVVE+ERKG+LL EK EDG+LN+L +A+GSPEPTS+SP  
Sbjct: 411 FSLDGRYLASAGEDCVIHVWQVVETERKGDLLTEKPEDGNLNLLFVASGSPEPTSMSPNV 470

Query: 523 LDNHLEKKRRG-RSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSW-SKSQH 580
            +N  EKKRRG  S++RKS+SLDH+ VPETVF LS+KP CSFQGH DDVLDLSW SKSQ 
Sbjct: 471 DNNSSEKKRRGRSSVSRKSVSLDHIKVPETVFGLSEKPFCSFQGHGDDVLDLSWSSKSQQ 530

Query: 581 LLSSSMDKTVRLWHLSSKTCLKIFSHSDY 609
           LLSSSMDKTVRLWHLSSK+CLKIFSHSDY
Sbjct: 531 LLSSSMDKTVRLWHLSSKSCLKIFSHSDY 559

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255587360|ref|XP_002534244.1| WD-repeat protein, putative [Ricinus communis] gi|223525645|gb|EEF28134.1| WD-repeat protein, putative [Ricinus communis]

 Score =  609 bits (1570), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 367/621 (59%), Positives = 432/621 (69%), Gaps = 73/621 (11%)

Query: 17  FYESLDRLVTSSSNSCTTSSSSDSEPDNPN-----RNPDSPNYEFRVPKFPMGVSTKYDV 71
           FYESLDR+ +SS +   ++S SD +P   +      + ++  Y F VPKF     + YDV
Sbjct: 41  FYESLDRIASSSCSCSASNSDSDLDPTPAHFNSPPNSDNNNGYPFVVPKF-----SGYDV 95

Query: 72  WISEPISVSERRSRLLREMGLSHDRALARAKPGSEVQDRGMGNGDFGRSASTDQLTKQDQ 131
           WISEP SVSERR RLL +MGL+ DRA    KPG              RSAS+D L+++  
Sbjct: 96  WISEPASVSERRERLLHQMGLASDRA----KPG--------------RSASSDHLSREQP 137

Query: 132 VCSSSSSNVRDGGVSVTIVRSKSDGAKSSSGCDRDGSGRHRHQLSVCSPSILSIHCSSLD 191
                S +         IVRSKSDG   S   DRD         + CS S+LS++     
Sbjct: 138 GPGPGSCS------GCGIVRSKSDGGGGSR-LDRDDG-----DFNSCSSSLLSVY----- 180

Query: 192 SPRVNNGNSNDNDSSNVSYNVDQNQSVLVRKSPSGNSNNGSSPVASAALS-NKPPTGR-N 249
           SPR+ + +  D +  N +   D N S     +      +GS    +A+LS NKPP+G+ N
Sbjct: 181 SPRILSHDLMDVNKCNSNVGDDNNNS----NNAVVVGGDGSKRTLNASLSPNKPPSGKFN 236

Query: 250 CKRMDESRGDSMSINGNGNYIGNSGEVVEDFDGNGTAGV-----------------AEQG 292
            ++MD +R DS + NGN N   + GE+ E+ D NG   V                 + Q 
Sbjct: 237 GRKMDVTRSDSTNSNGNLNGNWSLGELGEELDCNGVGRVDDTTRTSTTTITTSEAESTQV 296

Query: 293 CLIKNLDNGKEFVVNEIQEDGTWKKVKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQNVE 352
           C IKNLDNGKEFV+NEI+EDGT  K+KEVGTGRQLT+EEFEM VGHSPIVQELMRRQ VE
Sbjct: 297 CTIKNLDNGKEFVINEIREDGTLNKLKEVGTGRQLTMEEFEMSVGHSPIVQELMRRQIVE 356

Query: 353 EGNKDSFDLNNNGSSGGGM-KSKKKGSWFKSIRTVASSVTGH-KERRSSDERDTSSEKGG 410
           +G ++S D NNNG  G G+ K KKKGSWF+SIR+VA+ V G+ KERRSSDERDT SEKGG
Sbjct: 357 DGTRESLDSNNNGGVGSGVSKLKKKGSWFRSIRSVATGVKGNNKERRSSDERDTGSEKGG 416

Query: 411 RRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRY 470
           RRSSSATDDSQD SFHG ERVRVRQYGKS K+L+ALYK QEIQAHNGSIW IKFSLDGRY
Sbjct: 417 RRSSSATDDSQDTSFHGPERVRVRQYGKSFKELSALYKSQEIQAHNGSIWCIKFSLDGRY 476

Query: 471 LASAGEDCVIHVWQVVESERKGELL-EKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEK 529
           LASAGEDCVIH+WQV+E+ERKGELL +K EDG+ N LL ANGSPEP+ LSP   + H EK
Sbjct: 477 LASAGEDCVIHIWQVIETERKGELLIDKPEDGNFNFLLTANGSPEPSLLSPT-AEGHYEK 535

Query: 530 KRRGR-SINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKSQHLLSSSMDK 588
           KRRGR SI+RKSLSLDH+VVPETVFAL+DKPICSFQGHLDDVLDLSWSKSQHLLSSSMDK
Sbjct: 536 KRRGRSSISRKSLSLDHIVVPETVFALTDKPICSFQGHLDDVLDLSWSKSQHLLSSSMDK 595

Query: 589 TVRLWHLSSKTCLKIFSHSDY 609
           TVRLW LSSKTCLKIFSHSDY
Sbjct: 596 TVRLWQLSSKTCLKIFSHSDY 616

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18400779|ref|NP_566515.1| transducin/WD40 domain-containing protein [Arabidopsis thaliana] gi|13937211|gb|AAK50098.1|AF372960_1 AT3g15470/MJK13_13 [Arabidopsis thaliana] gi|7021732|gb|AAF35413.1| unknown protein [Arabidopsis thaliana] gi|15795112|dbj|BAB02376.1| WD-40 repeat protein-like [Arabidopsis thaliana] gi|19548013|gb|AAL87370.1| AT3g15470/MJK13_13 [Arabidopsis thaliana] gi|332642159|gb|AEE75680.1| transducin/WD40 domain-containing protein [Arabidopsis thaliana]

 Score =  549 bits (1414), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 330/625 (52%), Positives = 396/625 (63%), Gaps = 102/625 (16%)

Query: 7   GGDEEDEDECFYESLDRLVTS-------------SSNSCTTSSSSDSEPDNPNRNPDSPN 53
           GGD  D   CFYESLDRL +S             S +S   SS++  + +          
Sbjct: 11  GGDTND---CFYESLDRLASSSSCSCSASNSDYDSESSPRISSAASHDSEELYGGGRRRR 67

Query: 54  YEFRVPKFPMGVSTKYDVWISEPISVSERRSRLLREMGLSHDRALARAKP---GSEVQDR 110
           Y F VP+FPMG S K+DVW SEP SVSERRS+LL EMGLS D  L+R KP    S  +D 
Sbjct: 68  YPFPVPRFPMGAS-KFDVWTSEPASVSERRSKLLNEMGLSRDPVLSRLKPVSDSSSSKDT 126

Query: 111 GMGNGDFGRSASTDQLTKQDQ-VCSSSSSNVRDGGVSVTIVRSKSDGAKSSSGCDRDGSG 169
           G    +  RS S +QL ++D   CS S      GG +  IVRSKSD              
Sbjct: 127 GAAGFEISRSISCNQLARRDHGECSESV-----GGCASCIVRSKSD-------------- 167

Query: 170 RHRHQLSVCSPSILSIHCSSLDSPRVNNGNSNDNDSSNVSYNVDQNQSVLVRKSPSGNSN 229
                       I +  C   D    + GN      S +S +   +  +    SP  N +
Sbjct: 168 ------------ITTSQCGDRDRRYTSPGNPCSCSVSKLSVHHSSHSEISRTSSPFVNCS 215

Query: 230 NGSSPVASAALSNKPPTGRNCKRMDESRGDSMSINGNGNYIGNSGEVVEDFDGNGTAGVA 289
            GS                          DS+ +NG+ + +                   
Sbjct: 216 VGSVS-----------------------ADSLRLNGDSDCVLRES----------VVNEE 242

Query: 290 EQGCLIKNLDNGKEFVVNEIQEDGTWKKVKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQ 349
            + C IKNLDNGKEFVVNEIQEDGTWKKVKEVGTG Q+T+EEFEMCVGHSPIVQELMRRQ
Sbjct: 243 VEVCTIKNLDNGKEFVVNEIQEDGTWKKVKEVGTGTQMTMEEFEMCVGHSPIVQELMRRQ 302

Query: 350 NVEEGNKDSFDLNN---NGSSGGGMKSKKKGSWFKSIRTVASSVTGH-KERRSSDERDTS 405
           NVE+ +K++   N    N +     KSKKKGSWFKSI++VASS+TGH KERRSSD+RDTS
Sbjct: 303 NVEDSDKNTSKENEDSGNSNKDNASKSKKKGSWFKSIKSVASSMTGHSKERRSSDDRDTS 362

Query: 406 SEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFS 465
           SE+GGRRSSSATDDSQ+ SFHG ERVRVRQYGKS K+LTALYK QEIQAHNGSIWSIKFS
Sbjct: 363 SERGGRRSSSATDDSQESSFHGPERVRVRQYGKSSKELTALYKTQEIQAHNGSIWSIKFS 422

Query: 466 LDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDN 525
           LDG+YLASAGEDC+IH+WQVVE+E+KGELL  + +  L      NGSPEPT++SP     
Sbjct: 423 LDGKYLASAGEDCIIHIWQVVEAEKKGELLLDRPELLLLA---TNGSPEPTTMSP----- 474

Query: 526 HLEKKRRGR-SINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKSQHLLSS 584
               +RRGR SI+RKSLSL+++ VP+++F LS+KP CSFQGH+DDVLDL+WSKSQHLLSS
Sbjct: 475 ----RRRGRTSISRKSLSLENIFVPDSLFGLSEKPFCSFQGHVDDVLDLAWSKSQHLLSS 530

Query: 585 SMDKTVRLWHLSSKTCLKIFSHSDY 609
           SMDKTVRLW+LSS+TCLK+FSHSDY
Sbjct: 531 SMDKTVRLWNLSSQTCLKVFSHSDY 555

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224117222|ref|XP_002317512.1| predicted protein [Populus trichocarpa] gi|222860577|gb|EEE98124.1| predicted protein [Populus trichocarpa]

 Score =  540 bits (1392), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 269/334 (80%), Positives = 299/334 (89%), Gaps = 8/334 (2%)

Query: 283 NGTAGVAEQG----CLIKNLDNGKEFVVNEIQEDGTWKKVKEVGTGRQLTIEEFEMCVGH 338
           +G++ VA +G    C IKNLDNGKEFVVNEI+EDG W K+KEVGTGRQLT+EEFEM VGH
Sbjct: 224 DGSSSVAAEGEVEVCTIKNLDNGKEFVVNEIREDGMWNKLKEVGTGRQLTMEEFEMSVGH 283

Query: 339 SPIVQELMRRQNVEEGNKDSFDLNNNGSSGGGM-KSKKKGSWFKSIRTVASSVTGHKERR 397
           SPIVQELMRRQNVE+G + + D N NG  GGG+ K KKKGSWF SIR+VA+SVT HKERR
Sbjct: 284 SPIVQELMRRQNVEDGTRGNLDSNANGGIGGGVTKFKKKGSWFGSIRSVANSVTRHKERR 343

Query: 398 SSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNG 457
           SSDERDT SE+GGRRSSSATDDSQDVSFHG ERVRVRQYG+S K+L+ALYK QEIQAHNG
Sbjct: 344 SSDERDTGSERGGRRSSSATDDSQDVSFHGPERVRVRQYGRSSKELSALYKSQEIQAHNG 403

Query: 458 SIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELL-EKQEDGHLNMLLLANGSPEPT 516
           SIWSIKFSLDGRYLASAGEDCVIH+WQV +SERKGELL EK +DG LN+LL+ANGSPEP 
Sbjct: 404 SIWSIKFSLDGRYLASAGEDCVIHIWQVKQSERKGELLMEKPDDGGLNLLLIANGSPEPN 463

Query: 517 SLSPKHLDNHLEKKRRGR-SINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSW 575
            LSP  +D+HLEKKRRGR SI+RKSLSLDH+ VPETVF+L+DKPICSFQGHLDDVLDLSW
Sbjct: 464 LLSPL-VDSHLEKKRRGRSSISRKSLSLDHIFVPETVFSLTDKPICSFQGHLDDVLDLSW 522

Query: 576 SKSQHLLSSSMDKTVRLWHLSSKTCLKIFSHSDY 609
           SKSQHLLSSSMDKTVRLWH+SSKTCLK+FSHSDY
Sbjct: 523 SKSQHLLSSSMDKTVRLWHMSSKTCLKVFSHSDY 556

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224128378|ref|XP_002329147.1| predicted protein [Populus trichocarpa] gi|222869816|gb|EEF06947.1| predicted protein [Populus trichocarpa]

 Score =  531 bits (1368), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 265/335 (79%), Positives = 296/335 (88%), Gaps = 8/335 (2%)

Query: 282 GNGTAGVAEQG----CLIKNLDNGKEFVVNEIQEDGTWKKVKEVGTGRQLTIEEFEMCVG 337
           G+    V ++G    C IKNLDNGKEFVVNEI+EDG W K+KEVGTGRQLT+EEFEM VG
Sbjct: 139 GDTDGAVVDEGGSRVCTIKNLDNGKEFVVNEIREDGMWNKLKEVGTGRQLTMEEFEMSVG 198

Query: 338 HSPIVQELMRRQNVEEGNKDSFDLNNNGSSGGGM-KSKKKGSWFKSIRTVASSVTGHKER 396
           HSPIVQELMRRQ VE+G +++ D + NG  GGG+ K KKKGSWF+SI++VA+SVTG+KER
Sbjct: 199 HSPIVQELMRRQIVEDGTRENLDADANGGIGGGVSKFKKKGSWFRSIKSVANSVTGNKER 258

Query: 397 RSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHN 456
           RSSDERDT SEKGGRRSSSATDDSQDVSFHG ERVRVRQYG+  K+L+ALYK QEIQAHN
Sbjct: 259 RSSDERDTGSEKGGRRSSSATDDSQDVSFHGPERVRVRQYGRPSKELSALYKSQEIQAHN 318

Query: 457 GSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELL-EKQEDGHLNMLLLANGSPEP 515
           GSIWSIKFSLDGRYLASAGEDCVI++WQVVESERKGELL EK  DG LN+LL+ANGSPEP
Sbjct: 319 GSIWSIKFSLDGRYLASAGEDCVINIWQVVESERKGELLMEKPYDGGLNLLLMANGSPEP 378

Query: 516 TSLSPKHLDNHLEKKRRGR-SINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLS 574
             LSP  +D H EKKRRGR SI+RKSLSLDH+++PETVFAL+DKPICSF+GHLDDVLDLS
Sbjct: 379 NLLSPL-VDTHQEKKRRGRSSISRKSLSLDHIIMPETVFALTDKPICSFEGHLDDVLDLS 437

Query: 575 WSKSQHLLSSSMDKTVRLWHLSSKTCLKIFSHSDY 609
           WSKSQHLLSSSMDKTVRLWHLSS TCLKIFSHSDY
Sbjct: 438 WSKSQHLLSSSMDKTVRLWHLSSNTCLKIFSHSDY 472

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297796289|ref|XP_002866029.1| WD-40 repeat family protein [Arabidopsis lyrata subsp. lyrata] gi|297311864|gb|EFH42288.1| WD-40 repeat family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  483 bits (1244), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 240/332 (72%), Positives = 279/332 (84%), Gaps = 13/332 (3%)

Query: 282 GNGTAGVAE-QGCLIKNLDNGKEFVVNEIQEDGTWKKVKEVGTGRQLTIEEFEMCVGHSP 340
           GNG   V E Q C I+NLD G+EFVVNE++EDG  +++KEVGT RQLT+EEFEMCVG SP
Sbjct: 193 GNGRDVVLEEQMCTIRNLDTGREFVVNEVREDGMLERLKEVGTDRQLTLEEFEMCVGTSP 252

Query: 341 IVQELMRRQNVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSD 400
           IV ELMRRQNVE+  KDS DL+ N S     K +++GSW KSI+ VASSVTG+KERRS+D
Sbjct: 253 IVLELMRRQNVEDVCKDSVDLDTNVSGSRVTKHRRRGSWLKSIKNVASSVTGYKERRSTD 312

Query: 401 ERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIW 460
           +RD+ SE+GG+R SSATDDS+D+SFHG ERV+VRQYGKSCK+LTAL+K QEIQAH GSIW
Sbjct: 313 DRDSPSERGGQRFSSATDDSRDMSFHGPERVKVRQYGKSCKELTALFKSQEIQAHKGSIW 372

Query: 461 SIKFSLDGRYLASAGEDCVIHVWQVVESERKGELL--EKQEDGHLNMLLLANGSPEPTSL 518
           SIKFSLDGRYLASAGEDCVI +W+VVESERKGELL  +KQEDG +N+ LLAN SPEP S+
Sbjct: 373 SIKFSLDGRYLASAGEDCVIQIWKVVESERKGELLSMDKQEDGSINLFLLANDSPEPVSM 432

Query: 519 SPKHLDNHLEKKRRGR-SINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSK 577
           SP         KRRGR S +RKS+SLD+++VPE VF LS+KP+CSF GHLDDVLDLSWSK
Sbjct: 433 SP---------KRRGRTSFSRKSVSLDNVLVPEAVFGLSEKPVCSFVGHLDDVLDLSWSK 483

Query: 578 SQHLLSSSMDKTVRLWHLSSKTCLKIFSHSDY 609
           SQHLLSSSMDKTVRLW LSSKTCLK+FSHSDY
Sbjct: 484 SQHLLSSSMDKTVRLWDLSSKTCLKVFSHSDY 515

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15239575|ref|NP_200231.1| transducin/WD40 domain-containing protein [Arabidopsis thaliana] gi|10178169|dbj|BAB11582.1| unnamed protein product [Arabidopsis thaliana] gi|332009083|gb|AED96466.1| transducin/WD40 domain-containing protein [Arabidopsis thaliana]

 Score =  482 bits (1240), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 238/338 (70%), Positives = 282/338 (83%), Gaps = 13/338 (3%)

Query: 275 EVVEDFDGNGTAGVAEQGCLIKNLDNGKEFVVNEIQEDGTWKKVKEVGTGRQLTIEEFEM 334
           ++VE  +G     + EQ C I+NLD G+EFVVNE++EDG  +++KEVGT RQLT+EEFE+
Sbjct: 183 DIVEKENGRDVV-LEEQMCTIRNLDTGREFVVNEVREDGMLERLKEVGTDRQLTLEEFEI 241

Query: 335 CVGHSPIVQELMRRQNVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHK 394
           CVG SPIV ELMRRQNVE+  KDS DL+ N S     K +++GSW KSI+ VASSVTG+K
Sbjct: 242 CVGTSPIVLELMRRQNVEDVCKDSVDLDTNVSGSRVTKHRRRGSWLKSIKNVASSVTGYK 301

Query: 395 ERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQA 454
           ERRS+D+RD+ SE+GG+R SSATDDS+D+SFH  ERV+VRQYGKSCK+LTAL+K QEIQA
Sbjct: 302 ERRSTDDRDSPSERGGQRFSSATDDSRDMSFHDPERVKVRQYGKSCKELTALFKSQEIQA 361

Query: 455 HNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELL--EKQEDGHLNMLLLANGS 512
           H GSIWSIKFSLDGRYLASAGEDCVI +W+VVESERKGELL  +KQEDG +N+ LLANGS
Sbjct: 362 HKGSIWSIKFSLDGRYLASAGEDCVIQIWKVVESERKGELLSMDKQEDGSINLFLLANGS 421

Query: 513 PEPTSLSPKHLDNHLEKKRRGR-SINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVL 571
           PEP S+SP         KRRGR S +RKS+SLD+++VPE VF LS+KP+CSF GHLDDVL
Sbjct: 422 PEPVSMSP---------KRRGRTSFSRKSVSLDNVLVPEAVFGLSEKPVCSFVGHLDDVL 472

Query: 572 DLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFSHSDY 609
           DLSWSKSQHLLSSSMDKTVRLW LSSKTCLK+FSHSDY
Sbjct: 473 DLSWSKSQHLLSSSMDKTVRLWDLSSKTCLKVFSHSDY 510

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297834414|ref|XP_002885089.1| WD-40 repeat family protein [Arabidopsis lyrata subsp. lyrata] gi|297330929|gb|EFH61348.1| WD-40 repeat family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  473 bits (1218), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 239/326 (73%), Positives = 279/326 (85%), Gaps = 17/326 (5%)

Query: 293 CLIKNLDNGKEFVVNEIQEDGTWKKVKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQNVE 352
           C IKNLDNGKEFVVNEIQEDGTWKKVKEVGTG Q+T+EEFEMCVGHSPIVQELMRRQNVE
Sbjct: 248 CTIKNLDNGKEFVVNEIQEDGTWKKVKEVGTGTQMTMEEFEMCVGHSPIVQELMRRQNVE 307

Query: 353 EGNKDSFDLNN---NGSSGGGMKSKKKGSWFKSIRTVASSVTGH-KERRSSDERDTSSEK 408
           + +K++   N    N +     KSKKKGSWFKSI++VASS+TGH KERRSSD+RDTSSE+
Sbjct: 308 DSDKNTSKENEDSGNSNKDNASKSKKKGSWFKSIKSVASSMTGHSKERRSSDDRDTSSER 367

Query: 409 GGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDG 468
           GGRRSSSATDDSQ+ SFHG ERVRVRQYGKS K+LTALYK QEIQAHNGSIWSIKFSLDG
Sbjct: 368 GGRRSSSATDDSQESSFHGPERVRVRQYGKSSKELTALYKTQEIQAHNGSIWSIKFSLDG 427

Query: 469 RYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLE 528
           +YLASAGEDC++H+WQVVE+E+KGELL  + +  L      NGSPEPT++SP        
Sbjct: 428 KYLASAGEDCIVHIWQVVEAEKKGELLLDRPELLLLA---NNGSPEPTTMSP-------- 476

Query: 529 KKRRGR-SINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKSQHLLSSSMD 587
            +RRGR SI+RKSLSL+++ VP+++F LS+KP CSFQGH+DDVLDL+WSKSQ+LLSSSMD
Sbjct: 477 -RRRGRTSISRKSLSLENIFVPDSLFGLSEKPFCSFQGHVDDVLDLAWSKSQYLLSSSMD 535

Query: 588 KTVRLWHLSSKTCLKIFSHSDYDISL 613
           KTVRLW+LSS+TCLK+FSHSDY  S+
Sbjct: 536 KTVRLWNLSSQTCLKVFSHSDYVTSI 561

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356542264|ref|XP_003539589.1| PREDICTED: WD repeat-containing protein 44-like [Glycine max]

 Score =  451 bits (1161), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 234/330 (70%), Positives = 270/330 (81%), Gaps = 34/330 (10%)

Query: 290 EQGCLIKNLDNGKEFVVNEIQEDGTWKKVKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQ 349
           E+ C I++LDNGKEFVVNE++       ++EV TGRQLT+EEFEM VGHSPIVQELMRRQ
Sbjct: 133 EELCTIRDLDNGKEFVVNELE------NLREVATGRQLTMEEFEMTVGHSPIVQELMRRQ 186

Query: 350 NVEEGNKDSFDLNNNGSSGGGMKSKKKGS-WFKSIRTVASSVTGHKERRSSDERDTSSEK 408
           NVEE + DS        + GG K KKKG+ W KSI++VASSV G+++RRSSDERDTSSEK
Sbjct: 187 NVEEASVDS--------NAGGSKVKKKGTGWLKSIKSVASSVAGYRDRRSSDERDTSSEK 238

Query: 409 GGRRSSSATDDSQDV--SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSL 466
           GGRRSSSATDDSQ+   +FHG ERVRV+QYGKSCK++TALYK QEIQAH+GSIWSIKFSL
Sbjct: 239 GGRRSSSATDDSQEGGGAFHGPERVRVKQYGKSCKEVTALYKSQEIQAHSGSIWSIKFSL 298

Query: 467 DGRYLASAGEDCVIHVWQVVESERKGELL----EKQEDGH--LNMLLLANGSPEPTSLSP 520
           DG+YLASAGEDCVIHVWQVVE ERKGELL    EK EDG+  ++M L+ NGSP       
Sbjct: 299 DGKYLASAGEDCVIHVWQVVEGERKGELLLLDREKGEDGNGNVDMFLVVNGSPMADG--- 355

Query: 521 KHLDNHLEKKRRGRS-INRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKSQ 579
                  E+KR+GRS ++RKSLSLD  VVP+TVFAL+DKP+CSFQGHL DVLDLSWSK+Q
Sbjct: 356 -------ERKRKGRSSVSRKSLSLDQFVVPQTVFALTDKPVCSFQGHLHDVLDLSWSKTQ 408

Query: 580 HLLSSSMDKTVRLWHLSSKTCLKIFSHSDY 609
           HLLSSSMDKTVRLWHLSSK+CLKIFSHSDY
Sbjct: 409 HLLSSSMDKTVRLWHLSSKSCLKIFSHSDY 438

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	630
TAIR|locus:2090146	883	AT3G15470 "AT3G15470" [Arabido	0.482	0.344	0.643	3.5e-122
TAIR|locus:2153443	825	AT5G54200 "AT5G54200" [Arabido	0.515	0.393	0.618	1.1e-112
TAIR|locus:2181733	905	AT5G02430 "AT5G02430" [Arabido	0.479	0.333	0.407	3.5e-62
TAIR|locus:2040731	903	AT2G37670 "AT2G37670" [Arabido	0.471	0.328	0.417	6.8e-61
TAIR|locus:2169769	698	AT5G24320 "AT5G24320" [Arabido	0.311	0.280	0.368	3e-28
TAIR|locus:2168606	654	AT5G53500 "AT5G53500" [Arabido	0.304	0.293	0.379	2.2e-26
TAIR|locus:2019494	647	AT1G64610 "AT1G64610" [Arabido	0.292	0.284	0.340	2.7e-26
TAIR|locus:2165700	709	AT5G42010 "AT5G42010" [Arabido	0.306	0.272	0.346	1.1e-25
TAIR|locus:2028539	593	AT1G48870 [Arabidopsis thalian	0.111	0.118	0.422	3e-17
WB|WBGene00006369	1043	sym-4 [Caenorhabditis elegans	0.288	0.174	0.314	1.7e-12

TAIR|locus:2090146 AT3G15470 "AT3G15470" [Arabidopsis thaliana (taxid:3702)]

 Score = 1023 (365.2 bits), Expect = 3.5e-122, Sum P(2) = 3.5e-122
 Identities = 208/323 (64%), Positives = 243/323 (75%)

Query:   293 CLIKNLDNGKEFVVNEIQEDGTWKKVKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQNVE 352
             C IKNLDNGKEFVVNEIQEDGTWKKVKEVGTG Q+T+EEFEMCVGHSPIVQELMRRQNVE
Sbjct:   246 CTIKNLDNGKEFVVNEIQEDGTWKKVKEVGTGTQMTMEEFEMCVGHSPIVQELMRRQNVE 305

Query:   353 EGNKDSFDLNN---NXXXXXXXXXXXXXXXXXXIRTVASSVTGH-KXXXXXXXXXXXXXK 408
             + +K++   N    N                  I++VASS+TGH K             +
Sbjct:   306 DSDKNTSKENEDSGNSNKDNASKSKKKGSWFKSIKSVASSMTGHSKERRSSDDRDTSSER 365

Query:   409 GGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDG 468
             GGRRSSSATDDSQ+ SFHG ERVRVRQYGKS K+LTALYK QEIQAHNGSIWSIKFSLDG
Sbjct:   366 GGRRSSSATDDSQESSFHGPERVRVRQYGKSSKELTALYKTQEIQAHNGSIWSIKFSLDG 425

Query:   469 RYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLA-NGSPEPTSLSPKHLDNHL 527
             +YLASAGEDC+IH+WQVVE+E+KGELL  + +    +LLLA NGSPEPT++SP+      
Sbjct:   426 KYLASAGEDCIIHIWQVVEAEKKGELLLDRPE----LLLLATNGSPEPTTMSPR------ 475

Query:   528 EKKRRGR-SINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDXXXXXXXXXXXXXM 586
                RRGR SI+RKSLSL+++ VP+++F LS+KP CSFQGH+DDVLD             M
Sbjct:   476 ---RRGRTSISRKSLSLENIFVPDSLFGLSEKPFCSFQGHVDDVLDLAWSKSQHLLSSSM 532

Query:   587 DKTVRLWHLSSKTCLKIFSHSDY 609
             DKTVRLW+LSS+TCLK+FSHSDY
Sbjct:   533 DKTVRLWNLSSQTCLKVFSHSDY 555

GO:0004871 "signal transducer activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005834 "heterotrimeric G-protein complex" evidence=ISS

GO:0007165 "signal transduction" evidence=ISS

TAIR|locus:2153443 AT5G54200 "AT5G54200" [Arabidopsis thaliana (taxid:3702)]

 Score = 1032 (368.3 bits), Expect = 1.1e-112, Sum P(2) = 1.1e-112
 Identities = 209/338 (61%), Positives = 247/338 (73%)

Query:   275 EVVEDFDGNGTAGVAEQGCLIKNLDNGKEFVVNEIQEDGTWKKVKEVGTGRQLTIEEFEM 334
             ++VE  +G     + EQ C I+NLD G+EFVVNE++EDG  +++KEVGT RQLT+EEFE+
Sbjct:   183 DIVEKENGRDVV-LEEQMCTIRNLDTGREFVVNEVREDGMLERLKEVGTDRQLTLEEFEI 241

Query:   335 CVGHSPIVQELMRRQNVEEGNKDSFDLNNNXXXXXXXXXXXXXXXXXXIRTVASSVTGHK 394
             CVG SPIV ELMRRQNVE+  KDS DL+ N                  I+ VASSVTG+K
Sbjct:   242 CVGTSPIVLELMRRQNVEDVCKDSVDLDTNVSGSRVTKHRRRGSWLKSIKNVASSVTGYK 301

Query:   395 XXXXXXXXXXXXXKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQA 454
                          +GG+R SSATDDS+D+SFH  ERV+VRQYGKSCK+LTAL+K QEIQA
Sbjct:   302 ERRSTDDRDSPSERGGQRFSSATDDSRDMSFHDPERVKVRQYGKSCKELTALFKSQEIQA 361

Query:   455 HNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELL--EKQEDGHLNMLLLANGS 512
             H GSIWSIKFSLDGRYLASAGEDCVI +W+VVESERKGELL  +KQEDG +N+ LLANGS
Sbjct:   362 HKGSIWSIKFSLDGRYLASAGEDCVIQIWKVVESERKGELLSMDKQEDGSINLFLLANGS 421

Query:   513 PEPTSLSPKHLDNHLEKKRRGR-SINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVL 571
             PEP S+SPK         RRGR S +RKS+SLD+++VPE VF LS+KP+CSF GHLDDVL
Sbjct:   422 PEPVSMSPK---------RRGRTSFSRKSVSLDNVLVPEAVFGLSEKPVCSFVGHLDDVL 472

Query:   572 DXXXXXXXXXXXXXMDKTVRLWHLSSKTCLKIFSHSDY 609
             D             MDKTVRLW LSSKTCLK+FSHSDY
Sbjct:   473 DLSWSKSQHLLSSSMDKTVRLWDLSSKTCLKVFSHSDY 510

GO:0004871 "signal transducer activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005834 "heterotrimeric G-protein complex" evidence=ISS

GO:0007165 "signal transduction" evidence=ISS

TAIR|locus:2181733 AT5G02430 "AT5G02430" [Arabidopsis thaliana (taxid:3702)]

 Score = 587 (211.7 bits), Expect = 3.5e-62, Sum P(2) = 3.5e-62
 Identities = 130/319 (40%), Positives = 183/319 (57%)

Query:   294 LIKNLDNGKEFVVNEIQEDGTWKKVKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQNVEE 353
             LIKNLD GKEF+V E  E+G W ++ ++ TG+QLT+EEFE  VG+S +V++LMRR+N   
Sbjct:   257 LIKNLDTGKEFIVKEYGENGMWNRLSDLQTGKQLTMEEFEKSVGYSSVVKDLMRRENANS 316

Query:   354 GNKDSFDLNNNXXXXXXXXXXXXXXXXXXIRTVASSVTGHKXXXXXXXXXXXXXKGGRRS 413
                D    N+                   I+ VA S++  K               G  S
Sbjct:   317 -TMDFRKFNSYVSKSLRVSKKRGAALLKNIKDVAHSMSSSKVSEKEKDSTGS----GTSS 371

Query:   414 SSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLAS 473
                 + + +      + V+VR  GKS KDL+AL+ CQEIQAH G IW++KFS D   LAS
Sbjct:   372 PKVAEKNNE---QANQWVKVRHSGKSHKDLSALHMCQEIQAHQGGIWTMKFSPDSHLLAS 428

Query:   474 AGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLA-NGSPEPTSLSPKHLDNHLEKKRR 532
             AGEDC IHVW+V E E     +    +G L  +  + +GS + +S      +   +KK++
Sbjct:   429 AGEDCAIHVWEVQECE-----IMSMNEGSLTPIHPSMSGSTDKSSEGDA-AEVSQDKKKK 482

Query:   533 GR-SINRKSLSL-DHMVVPETVFALSDKPICSFQGHLDDVLDXXXXXXXXXXXXXMDKTV 590
             G+ S+++K   + D++  PETVF+LSDKPICSF GHLDDVLD             MDKTV
Sbjct:   483 GKTSMSKKGNQIPDYVHAPETVFSLSDKPICSFTGHLDDVLDLSWSRSQLLLSSSMDKTV 542

Query:   591 RLWHLSSKTCLKIFSHSDY 609
             RLW + +++CLK+F+H+DY
Sbjct:   543 RLWDIETQSCLKLFAHNDY 561

GO:0004871 "signal transducer activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005834 "heterotrimeric G-protein complex" evidence=ISS

GO:0007165 "signal transduction" evidence=ISS

TAIR|locus:2040731 AT2G37670 "AT2G37670" [Arabidopsis thaliana (taxid:3702)]

 Score = 593 (213.8 bits), Expect = 6.8e-61, Sum P(2) = 6.8e-61
 Identities = 134/321 (41%), Positives = 180/321 (56%)

Query:   294 LIKNLDNGKEFVVNEIQEDGTWKKVKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQNVEE 353
             LIKNLD GKEF+VNE  EDG W ++ ++ TG+QLT+EEFE CVG+SP+V+ELMRR+NV  
Sbjct:   247 LIKNLDTGKEFIVNEYDEDGMWNRLSDLQTGKQLTLEEFEKCVGYSPVVKELMRRENVNR 306

Query:   354 GNKDSF-DLNNNXXXXXXXXXXXXXXXXXXIRTVASSVTGHKXXXXXXXXXXXXXKGGRR 412
              N +   DL                     ++    ++ G                G   
Sbjct:   307 INYEPLMDLRKFNSYLSKSVRLSKRRGAALLK----NIKGVAHSMSLRVADKDVSDGSTD 362

Query:   413 SSSATDDSQDVSFHGQ--ERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRY 470
             S     D +    HG+  E V+VR  GKS K+L+AL+ CQEIQAH G++W+IKFS D  Y
Sbjct:   363 SPKKGKDHK----HGKANEWVKVRPTGKSYKELSALHMCQEIQAHEGAVWTIKFSQDAHY 418

Query:   471 LASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKK 530
             LAS G D VIHVW+V E E     L    +G L  +      P     S   +   +EKK
Sbjct:   419 LASGGADRVIHVWEVQECE-----LMSMNEGSLTPI-----HPSLCDSSGNEI-TVVEKK 467

Query:   531 RRGR-SINRKSLSL-DHMVVPETVFALSDKPICSFQGHLDDVLDXXXXXXXXXXXXXMDK 588
             ++G+ S  R+   + D++ VPETVF+ SDKP+CS +GHLD +LD             MDK
Sbjct:   468 KKGKGSSGRRHNHIPDYVHVPETVFSFSDKPVCSLKGHLDAILDLSWSKSQLLLSSSMDK 527

Query:   589 TVRLWHLSSKTCLKIFSHSDY 609
             TVRLW + +KTCLK+F+H+DY
Sbjct:   528 TVRLWDIETKTCLKLFAHNDY 548

GO:0004871 "signal transducer activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005834 "heterotrimeric G-protein complex" evidence=ISS

GO:0007165 "signal transduction" evidence=ISS

GO:0048610 "cellular process involved in reproduction" evidence=RCA

GO:0048868 "pollen tube development" evidence=RCA

TAIR|locus:2169769 AT5G24320 "AT5G24320" [Arabidopsis thaliana (taxid:3702)]

 Score = 327 (120.2 bits), Expect = 3.0e-28, Sum P(2) = 3.0e-28
 Identities = 76/206 (36%), Positives = 113/206 (54%)

Query:   411 RRSSSATDDSQDVSFHGQ--ERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDG 468
             +RS+   D+  +V+  G   ERV+V++Y K  K+L+AL+K QEIQAH G+I ++KFS DG
Sbjct:   204 KRSAGGDDNGGEVAVCGSRIERVKVKEYKKEAKELSALFKGQEIQAHEGAILAMKFSPDG 263

Query:   469 RYLASAGEDCVIHVWQVVESERKGEL-LEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHL 527
             RYLASAGED V+ VW VVE ER  E  + K +   +   +       P ++    +   L
Sbjct:   264 RYLASAGEDGVLRVWSVVEDERCEEHDVPKIDPSCIYFEVSKLSELRPVAVEKDGITGSL 323

Query:   528 EKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDXXXXXXXXXXXXXMD 587
                R       K+     +++P  +F + DKP+  F GH  D+LD             +D
Sbjct:   324 MSPR-------KTTESACVIIPPKIFRVLDKPLHEFLGHSGDILDISWSKNNRLLSASVD 376

Query:   588 KTVRLWHLSSKTCLKIFSHSDYDISL 613
              +VRLW +  + CL IFSH++Y  S+
Sbjct:   377 NSVRLWQIGCEDCLGIFSHNNYVTSV 402

GO:0004871 "signal transducer activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005834 "heterotrimeric G-protein complex" evidence=ISS

GO:0007165 "signal transduction" evidence=ISS

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA

GO:0016926 "protein desumoylation" evidence=RCA

GO:0050665 "hydrogen peroxide biosynthetic process" evidence=RCA

TAIR|locus:2168606 AT5G53500 "AT5G53500" [Arabidopsis thaliana (taxid:3702)]

 Score = 302 (111.4 bits), Expect = 2.2e-26, Sum P(2) = 2.2e-26
 Identities = 79/208 (37%), Positives = 116/208 (55%)

Query:   409 GGR-RSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLD 467
             GGR R+SS   D   +S     RV+V+   K  K+L+ALY+ Q+I+AH+G+I ++KFS D
Sbjct:   180 GGRMRASSGYGDV--IS-----RVKVKHCKKQAKELSALYQSQDIKAHDGAILAMKFSND 232

Query:   468 GRYLASAGEDCVIHVWQVVESERKGELLEK--QEDGHLNMLLLANGSPEPTSLSPKHLDN 525
             G++LAS+GED ++ VW+VVE ++K  L      E     M    N   + + L P  L N
Sbjct:   233 GKFLASSGEDGIVRVWKVVE-DKKSRLRRDCLNEIDPSCMYFEVN---DLSQLKPV-LVN 287

Query:   526 HLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDXXXXXXXXXXXXX 585
               + K+   S  RK+     +V P  VF + +KP+  F+GH  +VLD             
Sbjct:   288 EEKPKKTTESF-RKTSDSACVVFPPKVFRIMEKPLYEFRGHTGEVLDISWSKDNYLLSAS 346

Query:   586 MDKTVRLWHLSSKTCLKIFSHSDYDISL 613
             MDKTVRLW + S  CL +F+H+ Y  S+
Sbjct:   347 MDKTVRLWKVGSNDCLGVFAHNSYVTSV 374

GO:0004871 "signal transducer activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005834 "heterotrimeric G-protein complex" evidence=ISS

GO:0007165 "signal transduction" evidence=ISS

TAIR|locus:2019494 AT1G64610 "AT1G64610" [Arabidopsis thaliana (taxid:3702)]

 Score = 314 (115.6 bits), Expect = 2.7e-26, Sum P(3) = 2.7e-26
 Identities = 65/191 (34%), Positives = 107/191 (56%)

Query:   419 DSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDC 478
             D + V     +  RV+ + K  K+L+++   QE  AH+GSI ++KFS DG+Y+ASAGEDC
Sbjct:   181 DCESVRTQLHQVARVQTHKKQFKELSSMCIDQEFSAHDGSILAMKFSPDGKYIASAGEDC 240

Query:   479 VIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINR 538
             V+ VW + E ER       + D  +       G  + + + P  ++N  EK  +  S  R
Sbjct:   241 VVRVWSITEEERTDTYEVAEVDSGVYF-----GMNQRSQIEPLKINN--EKTEKKSSFLR 293

Query:   539 KSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDXXXXXXXXXXXXXMDKTVRLWHLSSK 598
             KS     +V+P T+F++S+KP+  F+GH+ ++LD             +D+TVRLW +   
Sbjct:   294 KSSDSTCVVLPPTIFSISEKPLHEFKGHIGEILDLSWSEKGYLLSSSVDETVRLWRVGCD 353

Query:   599 TCLKIFSHSDY 609
              CL+ F+H+++
Sbjct:   354 ECLRTFTHNNF 364

GO:0004871 "signal transducer activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005834 "heterotrimeric G-protein complex" evidence=ISS

GO:0007165 "signal transduction" evidence=ISS;RCA

GO:0000165 "MAPK cascade" evidence=RCA

GO:0000303 "response to superoxide" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0007154 "cell communication" evidence=RCA

GO:0008219 "cell death" evidence=RCA

GO:0009409 "response to cold" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009755 "hormone-mediated signaling pathway" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0045087 "innate immune response" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

TAIR|locus:2165700 AT5G42010 "AT5G42010" [Arabidopsis thaliana (taxid:3702)]

 Score = 315 (115.9 bits), Expect = 1.1e-25, P = 1.1e-25
 Identities = 69/199 (34%), Positives = 106/199 (53%)

Query:   412 RSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYL 471
             ++   TD     S   ++  RV+ + K  K+L++L   QE  AH+GSI  +KFS DG+YL
Sbjct:   213 KTEECTDGESTRSSIRRQLTRVQSFKKQFKELSSLCVGQEFSAHDGSIVVMKFSHDGKYL 272

Query:   472 ASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKR 531
             ASAGEDCV+ VW ++E ER+    E  E     +     G  + + + P   +N  EK  
Sbjct:   273 ASAGEDCVVRVWNIIEDERRDNEFEVAESDSSCVYF---GMNDKSQIEPLKTEN--EKIE 327

Query:   532 RGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDXXXXXXXXXXXXXMDKTVR 591
             + R + RK       V+P  VF++S+ P   F+GH  ++LD             +D+TVR
Sbjct:   328 KSRGLLRKKSESTCAVLPSKVFSISETPQHEFRGHTGEILDLSWSEKGFLLSSSVDETVR 387

Query:   592 LWHL-SSKTCLKIFSHSDY 609
             LW + SS  C+++FSH  +
Sbjct:   388 LWRVGSSDECIRVFSHKSF 406

GO:0004871 "signal transducer activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005834 "heterotrimeric G-protein complex" evidence=ISS

GO:0007165 "signal transduction" evidence=ISS

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

TAIR|locus:2028539 AT1G48870 [Arabidopsis thaliana (taxid:3702)]

 Score = 156 (60.0 bits), Expect = 3.0e-17, Sum P(3) = 3.0e-17
 Identities = 30/71 (42%), Positives = 46/71 (64%)

Query:   430 RVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESE 489
             +V+V+   KS  +L+A Y  Q+I  H G IW++KFS DG+YLA+ GED V+ +W++  S+
Sbjct:   172 KVKVKTNKKSHVELSAAYMVQKINGHKGKIWTLKFSPDGKYLATGGEDGVVKIWRITLSD 231

Query:   490 RK-GELLEKQE 499
                   L +QE
Sbjct:   232 SLLASFLRQQE 242

GO:0000159 "protein phosphatase type 2A complex" evidence=IEA

GO:0004871 "signal transducer activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0005834 "heterotrimeric G-protein complex" evidence=ISS

GO:0007165 "signal transduction" evidence=IEA;ISS

GO:0008601 "protein phosphatase type 2A regulator activity" evidence=IEA

WB|WBGene00006369 sym-4 [Caenorhabditis elegans (taxid:6239)]

 Score = 201 (75.8 bits), Expect = 1.7e-12, P = 1.7e-12
 Identities = 61/194 (31%), Positives = 87/194 (44%)

Query:   417 TDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQ-AHNGSIWSIKFSLDGRYLASAG 475
             +D+    S      VR R+  K   D   L   QE+   H G+IW IKFS+ G+ +A+AG
Sbjct:   577 SDEPHHPSVAPSNIVRPRKSKKGPYDFEHLTVEQELNNEHTGAIWCIKFSICGKLMATAG 636

Query:   476 EDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRS 535
             +D ++ VW VV S      L+   D  +     AN +PE   ++   +DN +E  R   S
Sbjct:   637 QDSILRVW-VVRSH-----LQYFSD--MREKYAANANPEADPMNS--VDN-MEHFRPPSS 685

Query:   536 INRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDXXXXXXXXXXXXXMDKTVRLWHL 595
             +     S       +       KP    +GH  D+LD             MD+TV+LWHL
Sbjct:   686 MESVVNSEATTASDDNNGLFCAKPFALLKGHTADILDVSWSKNYFILSSGMDRTVKLWHL 745

Query:   596 SSKTCLKIFSHSDY 609
             S   CL  F H D+
Sbjct:   746 SRNECLCCFQHIDF 759

GO:0040010 "positive regulation of growth rate" evidence=IMP

GO:0040011 "locomotion" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: AT3G15470 WD-40 repeat family protein; WD-40 repeat family protein; FUNCTIONS IN- signal transducer activity; INVOLVED IN- signal transduction; LOCATED IN- heterotrimeric G-protein complex; EXPRESSED IN- 19 plant structures; EXPRESSED DURING- 12 growth stages; CONTAINS InterPro DOMAIN/s- WD40 repeat-like (InterPro-IPR011046), WD40 repeat, region (InterPro-IPR017986), WD40/YVTN repeat-like (InterPro-IPR015943), WD40 repeat (InterPro-IPR001680); BEST Arabidopsis thaliana protein match is- WD-40 repeat family protein (TAIR-AT5G54200.1); Has 26859 Blast hits to 16455 proteins in 561 species- Archae [...] (883 aa) (Arabidopsis thaliana)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	630
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	1e-12
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	1e-11
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	3e-09
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	2e-08
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	7e-07
smart00320	40	smart00320, WD40, WD40 repeats	2e-06
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	2e-06
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	3e-06
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	6e-06
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	7e-06
smart00320	40	smart00320, WD40, WD40 repeats	1e-05
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	1e-04
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	0.001

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 68.5 bits (168), Expect = 1e-12
 Identities = 37/167 (22%), Positives = 65/167 (38%), Gaps = 39/167 (23%)

Query: 450 QEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLA 509
           + ++ H G +  + FS DG+ LA+   D  I VW +      GELL   +          
Sbjct: 3   RTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDL----ETGELLRTLK---------- 48

Query: 510 NGSPEPTSLSPKHLDNHLEKKRRGRSINRKSL----SLDHMVVPETVFALSD-KPICSFQ 564
                           H    R   +    +     S D  +    ++ L   + + +  
Sbjct: 49  ---------------GHTGPVRDVAASADGTYLASGSSDKTI---RLWDLETGECVRTLT 90

Query: 565 GHLDDVLDLSWSKSQHLLSSSM-DKTVRLWHLSSKTCLKIF-SHSDY 609
           GH   V  +++S    +LSSS  DKT+++W + +  CL     H+D+
Sbjct: 91  GHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDW 137

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 65.0 bits (159), Expect = 1e-11
 Identities = 46/177 (25%), Positives = 75/177 (42%), Gaps = 33/177 (18%)

Query: 438 KSCK--DLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELL 495
           K+ +  DL      + +  H   + S+ FS DGR L+S+  D  I VW V   +    L 
Sbjct: 73  KTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTL- 131

Query: 496 EKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL 555
                GH + +     SP+ T ++                    S S D  +    ++ L
Sbjct: 132 ----RGHTDWVNSVAFSPDGTFVA--------------------SSSQDGTI---KLWDL 164

Query: 556 -SDKPICSFQGHLDDVLDLSWS-KSQHLLSSSMDKTVRLWHLSSKTCLKIF-SHSDY 609
            + K + +  GH  +V  +++S   + LLSSS D T++LW LS+  CL     H + 
Sbjct: 165 RTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENG 221

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 58.1 bits (141), Expect = 3e-09
 Identities = 41/175 (23%), Positives = 73/175 (41%), Gaps = 38/175 (21%)

Query: 438 KSCK--DLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELL 495
           K+ K  D+        ++ H   + S+ FS DG ++AS+ +D  I +W +   +    L 
Sbjct: 115 KTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATL- 173

Query: 496 EKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSL---SLDHMVVPETV 552
                GH        G     + SP                + + L   S D  +    +
Sbjct: 174 ----TGH-------TGEVNSVAFSP----------------DGEKLLSSSSDGTI---KL 203

Query: 553 FALSD-KPICSFQGHLDDVLDLSWSKSQHLL-SSSMDKTVRLWHLSSKTCLKIFS 605
           + LS  K + + +GH + V  +++S   +LL S S D T+R+W L +  C++  S
Sbjct: 204 WDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLS 258

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 55.8 bits (135), Expect = 2e-08
 Identities = 37/159 (23%), Positives = 64/159 (40%), Gaps = 29/159 (18%)

Query: 453 QAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGS 512
           + H G +  +  S DG YLAS   D  I +W +      GE +     GH + +     S
Sbjct: 48  KGHTGPVRDVAASADGTYLASGSSDKTIRLWDL----ETGECVRTLT-GHTSYVSSVAFS 102

Query: 513 PEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLD 572
           P+   LS    D              K++ +  +   + +         + +GH D V  
Sbjct: 103 PDGRILSSSSRD--------------KTIKVWDVETGKCLT--------TLRGHTDWVNS 140

Query: 573 LSWSKSQHLL-SSSMDKTVRLWHLSSKTCLKIFS-HSDY 609
           +++S     + SSS D T++LW L +  C+   + H+  
Sbjct: 141 VAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGE 179

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 50.8 bits (122), Expect = 7e-07
 Identities = 37/160 (23%), Positives = 59/160 (36%), Gaps = 42/160 (26%)

Query: 442 DLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDG 501
           DL        +  H G + S+ FS DG  L S+  D  I +W  + + +    L   E+G
Sbjct: 163 DLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWD-LSTGKCLGTLRGHENG 221

Query: 502 ------HLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVF-A 554
                   +  LLA+GS                      +I               V+  
Sbjct: 222 VNSVAFSPDGYLLASGS-------------------EDGTIR--------------VWDL 248

Query: 555 LSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLW 593
            + + + +  GH + V  L+WS   + L S S D T+R+W
Sbjct: 249 RTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIW 288

Length = 289

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 44.6 bits (106), Expect = 2e-06
 Identities = 14/35 (40%), Positives = 22/35 (62%)

Query: 449 CQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVW 483
            + ++ H G + S+ FS DG+YLAS  +D  I +W
Sbjct: 5   LKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLW 39

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 50.5 bits (119), Expect = 2e-06
 Identities = 48/202 (23%), Positives = 73/202 (36%), Gaps = 26/202 (12%)

Query: 447 YKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNML 506
                ++ H  SI SI FS DG  L S   D  I +W +   E+  + LE   D  ++ L
Sbjct: 56  LSSLLLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKL 115

Query: 507 LLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSD--------- 557
            L++       L+   LD  ++                H     ++    D         
Sbjct: 116 ALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSS 175

Query: 558 -------------KPICSFQGHLDDVLDLSWS--KSQHLLSSSMDKTVRLWHLSSKTCLK 602
                        KP+ +  GH D V  L++S      + S S D T+RLW LS+   L+
Sbjct: 176 LDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLR 235

Query: 603 --IFSHSDYDISLVDRLMLRFA 622
             +  HSD  +S         A
Sbjct: 236 STLSGHSDSVVSSFSPDGSLLA 257

Length = 466

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 43.9 bits (104), Expect = 3e-06
 Identities = 13/34 (38%), Positives = 20/34 (58%)

Query: 450 QEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVW 483
           + ++ H G + S+ FS DG  LAS  +D  + VW
Sbjct: 5   RTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVW 38

Length = 39

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 43.1 bits (102), Expect = 6e-06
 Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 1/38 (2%)

Query: 558 KPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWH 594
           K + + +GH   V  +++S     L S S D TVR+W 
Sbjct: 2   KLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 47.7 bits (114), Expect = 7e-06
 Identities = 15/43 (34%), Positives = 21/43 (48%)

Query: 442 DLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQ 484
           DL      Q +  H  S+ S+ +S DG+ LAS   D  I +W 
Sbjct: 247 DLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289

Length = 289

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 42.3 bits (100), Expect = 1e-05
 Identities = 12/40 (30%), Positives = 23/40 (57%), Gaps = 1/40 (2%)

Query: 556 SDKPICSFQGHLDDVLDLSWSK-SQHLLSSSMDKTVRLWH 594
           S + + + +GH   V  +++S   ++L S S D T++LW 
Sbjct: 1   SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 44.7 bits (104), Expect = 1e-04
 Identities = 39/178 (21%), Positives = 63/178 (35%), Gaps = 18/178 (10%)

Query: 452 IQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDG---------H 502
           +  H+ S+ S+ FS DG+ LAS   D  + +W +   +    L  K  +G          
Sbjct: 280 LSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPD 339

Query: 503 LNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPET--------VFA 554
            ++L+          L        L+      ++   S S D  VV              
Sbjct: 340 GSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSNVLSVSFSPDGRVVSSGSTDGTVRLWDL 399

Query: 555 LSDKPICSFQGHLDDVLDLSWS-KSQHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYDI 611
            +   + +  GH   V  L +S   + L S S D T+RLW L +      FS     +
Sbjct: 400 STGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKTSLKSVSFSPDGKVL 457

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 41.2 bits (97), Expect = 0.001
 Identities = 12/52 (23%), Positives = 25/52 (48%), Gaps = 2/52 (3%)

Query: 559 PICSFQGHLDDVLDLSWS-KSQHLLSSSMDKTVRLWHLSSKTCLKIFS-HSD 608
              + +GH   V  +++S   + L + S D T+++W L +   L+    H+ 
Sbjct: 1   LRRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTG 52

Length = 289

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	630
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0283	712	consensus WD40 repeat-containing protein [Function	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	99.97
KOG0279	315	consensus G protein beta subunit-like protein [Sig	99.97
KOG0645	312	consensus WD40 repeat protein [General function pr	99.97
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	99.97
KOG0318	603	consensus WD40 repeat stress protein/actin interac	99.97
KOG0286	343	consensus G-protein beta subunit [General function	99.97
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.97
KOG0266	456	consensus WD40 repeat-containing protein [General	99.96
KOG0318	603	consensus WD40 repeat stress protein/actin interac	99.96
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	99.96
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	99.96
KOG0315	311	consensus G-protein beta subunit-like protein (con	99.96
KOG0295	406	consensus WD40 repeat-containing protein [Function	99.96
KOG0266	456	consensus WD40 repeat-containing protein [General	99.96
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.96
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	99.96
KOG0315	311	consensus G-protein beta subunit-like protein (con	99.96
KOG0263	707	consensus Transcription initiation factor TFIID, s	99.96
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	99.95
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	99.95
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.95
KOG0296	399	consensus Angio-associated migratory cell protein	99.95
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.95
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	99.95
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.95
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.94
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.94
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	99.94
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.94
PLN00181	793	protein SPA1-RELATED; Provisional	99.94
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	99.94
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	99.94
KOG0284	464	consensus Polyadenylation factor I complex, subuni	99.94
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	99.93
PTZ00421	493	coronin; Provisional	99.93
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	99.93
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.92
KOG0316	307	consensus Conserved WD40 repeat-containing protein	99.92
KOG0284	464	consensus Polyadenylation factor I complex, subuni	99.92
PLN00181	793	protein SPA1-RELATED; Provisional	99.92
KOG0282	503	consensus mRNA splicing factor [Function unknown]	99.92
KOG0645	312	consensus WD40 repeat protein [General function pr	99.92
PTZ00420	568	coronin; Provisional	99.92
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.91
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.91
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.91
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.91
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.91
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.91
KOG0643	327	consensus Translation initiation factor 3, subunit	99.9
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.9
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.9
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.9
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.9
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.9
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.89
KOG0296	399	consensus Angio-associated migratory cell protein	99.89
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.89
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.89
PTZ00420	568	coronin; Provisional	99.89
KOG0641	350	consensus WD40 repeat protein [General function pr	99.89
PTZ00421	493	coronin; Provisional	99.89
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	99.89
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.88
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.88
KOG0316	307	consensus Conserved WD40 repeat-containing protein	99.88
KOG0282	503	consensus mRNA splicing factor [Function unknown]	99.88
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.88
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.88
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.88
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.87
KOG0289	506	consensus mRNA splicing factor [General function p	99.86
KOG0267	825	consensus Microtubule severing protein katanin p80	99.86
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.86
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.86
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.86
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.85
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.85
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.85
KOG0646	476	consensus WD40 repeat protein [General function pr	99.85
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.85
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.84
KOG0289	506	consensus mRNA splicing factor [General function p	99.84
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.84
KOG0643	327	consensus Translation initiation factor 3, subunit	99.83
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.83
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.83
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.83
KOG1539	910	consensus WD repeat protein [General function pred	99.83
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.82
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.82
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.82
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.82
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.82
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.81
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.8
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.8
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.8
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.8
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.8
KOG0267	825	consensus Microtubule severing protein katanin p80	99.8
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.79
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.79
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.79
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.79
KOG0639	705	consensus Transducin-like enhancer of split protei	99.78
KOG2096	420	consensus WD40 repeat protein [General function pr	99.78
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.78
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.78
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.78
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.78
KOG0641	350	consensus WD40 repeat protein [General function pr	99.78
KOG2096	420	consensus WD40 repeat protein [General function pr	99.77
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.77
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.74
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.72
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.72
KOG1274	933	consensus WD40 repeat protein [General function pr	99.71
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.71
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.71
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.7
KOG2048	691	consensus WD40 repeat protein [General function pr	99.69
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.68
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.68
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.67
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.67
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.66
COG2319	466	FOG: WD40 repeat [General function prediction only	99.66
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.66
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.65
KOG4328	498	consensus WD40 protein [Function unknown]	99.64
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.64
KOG2055	514	consensus WD40 repeat protein [General function pr	99.63
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.62
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.62
COG2319	466	FOG: WD40 repeat [General function prediction only	99.61
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.61
KOG1274	933	consensus WD40 repeat protein [General function pr	99.6
KOG0646	476	consensus WD40 repeat protein [General function pr	99.6
KOG2048	691	consensus WD40 repeat protein [General function pr	99.6
KOG0639	705	consensus Transducin-like enhancer of split protei	99.6
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.59
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.59
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.59
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.58
KOG1273	405	consensus WD40 repeat protein [General function pr	99.57
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.56
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.55
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.53
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.53
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.52
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.52
KOG4328	498	consensus WD40 protein [Function unknown]	99.51
KOG1334	559	consensus WD40 repeat protein [General function pr	99.51
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.51
KOG1539	910	consensus WD repeat protein [General function pred	99.51
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.51
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.5
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.5
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.49
PRK01742	429	tolB translocation protein TolB; Provisional	99.47
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.46
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.46
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.45
KOG1188	376	consensus WD40 repeat protein [General function pr	99.45
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.41
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.41
KOG1963	792	consensus WD40 repeat protein [General function pr	99.41
PRK11028	330	6-phosphogluconolactonase; Provisional	99.41
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.4
KOG4227	609	consensus WD40 repeat protein [General function pr	99.4
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.38
PRK01742	429	tolB translocation protein TolB; Provisional	99.36
KOG0649	325	consensus WD40 repeat protein [General function pr	99.34
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.34
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.33
KOG1273	405	consensus WD40 repeat protein [General function pr	99.32
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.31
KOG1310	758	consensus WD40 repeat protein [General function pr	99.31
KOG1188	376	consensus WD40 repeat protein [General function pr	99.31
KOG2055	514	consensus WD40 repeat protein [General function pr	99.3
PRK04922	433	tolB translocation protein TolB; Provisional	99.28
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.27
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.26
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.26
PRK03629	429	tolB translocation protein TolB; Provisional	99.25
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.25
PRK05137	435	tolB translocation protein TolB; Provisional	99.23
KOG1963	792	consensus WD40 repeat protein [General function pr	99.23
PRK11028	330	6-phosphogluconolactonase; Provisional	99.22
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.22
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.21
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.21
KOG0649	325	consensus WD40 repeat protein [General function pr	99.21
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.2
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.19
PRK05137	435	tolB translocation protein TolB; Provisional	99.17
PRK03629	429	tolB translocation protein TolB; Provisional	99.17
KOG1310	758	consensus WD40 repeat protein [General function pr	99.17
PRK04922	433	tolB translocation protein TolB; Provisional	99.16
PRK02889	427	tolB translocation protein TolB; Provisional	99.15
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.14
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.14
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.13
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.13
KOG2139	445	consensus WD40 repeat protein [General function pr	99.13
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.12
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.1
PRK02889	427	tolB translocation protein TolB; Provisional	99.06
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.04
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.04
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.03
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.03
KOG3881	412	consensus Uncharacterized conserved protein [Funct	98.98
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	98.97
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	98.94
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	98.93
KOG4227	609	consensus WD40 repeat protein [General function pr	98.92
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	98.91
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	98.88
PRK00178	430	tolB translocation protein TolB; Provisional	98.88
KOG2321	703	consensus WD40 repeat protein [General function pr	98.87
KOG1334	559	consensus WD40 repeat protein [General function pr	98.87
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	98.83
PRK00178	430	tolB translocation protein TolB; Provisional	98.82
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	98.81
KOG0280	339	consensus Uncharacterized conserved protein [Amino	98.81
PRK04792	448	tolB translocation protein TolB; Provisional	98.8
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	98.79
KOG2321	703	consensus WD40 repeat protein [General function pr	98.75
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	98.75
PRK04792	448	tolB translocation protein TolB; Provisional	98.71
PRK01029	428	tolB translocation protein TolB; Provisional	98.71
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	98.67
PRK01029	428	tolB translocation protein TolB; Provisional	98.66
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	98.66
KOG4547	541	consensus WD40 repeat-containing protein [General	98.65
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	98.64
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	98.62
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	98.6
KOG4547	541	consensus WD40 repeat-containing protein [General	98.59
KOG2111	346	consensus Uncharacterized conserved protein, conta	98.58
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.56
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	98.54
KOG2139	445	consensus WD40 repeat protein [General function pr	98.5
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.48
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.48
KOG3881	412	consensus Uncharacterized conserved protein [Funct	98.43
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	98.43
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	98.42
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	98.36
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	98.34
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	98.27
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	98.27
KOG0280	339	consensus Uncharacterized conserved protein [Amino	98.25
KOG2315	566	consensus Predicted translation initiation factor	98.18
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.14
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	98.13
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	98.11
KOG1409	404	consensus Uncharacterized conserved protein, conta	98.09
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	97.99
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	97.96
KOG2695	425	consensus WD40 repeat protein [General function pr	97.96
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	97.93
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	97.87
COG4946	668	Uncharacterized protein related to the periplasmic	97.87
KOG2315	566	consensus Predicted translation initiation factor	97.83
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	97.82
PRK04043	419	tolB translocation protein TolB; Provisional	97.81
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	97.81
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	97.81
KOG2041	1189	consensus WD40 repeat protein [General function pr	97.81
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	97.8
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	97.78
PRK04043	419	tolB translocation protein TolB; Provisional	97.77
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	97.75
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	97.75
KOG4532	344	consensus WD40-like repeat containing protein [Gen	97.69
KOG4532	344	consensus WD40-like repeat containing protein [Gen	97.69
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	97.69
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	97.6
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	97.56
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	97.55
KOG4714	319	consensus Nucleoporin [Nuclear structure]	97.49
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	97.48
KOG4714	319	consensus Nucleoporin [Nuclear structure]	97.45
COG4946	668	Uncharacterized protein related to the periplasmic	97.43
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.41
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	97.4
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	97.37
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.35
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	97.32
KOG2314	698	consensus Translation initiation factor 3, subunit	97.31
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	97.3
KOG2695	425	consensus WD40 repeat protein [General function pr	97.28
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	97.23
KOG2041	1189	consensus WD40 repeat protein [General function pr	97.18
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	97.16
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	97.01
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	97.0
KOG1912	1062	consensus WD40 repeat protein [General function pr	96.92
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	96.9
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	96.85
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	96.82
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	96.8
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	96.74
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	96.72
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	96.65
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	96.59
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	96.36
KOG1912	1062	consensus WD40 repeat protein [General function pr	96.28
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	96.19
KOG1008	783	consensus Uncharacterized conserved protein, conta	96.17
PRK02888	635	nitrous-oxide reductase; Validated	96.01
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	95.92
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	95.82
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	95.81
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	95.49
PRK13616	591	lipoprotein LpqB; Provisional	95.35
PRK02888	635	nitrous-oxide reductase; Validated	95.16
KOG2314	698	consensus Translation initiation factor 3, subunit	95.11
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	95.03
KOG3621	726	consensus WD40 repeat-containing protein [General	94.69
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	94.57
KOG2395	644	consensus Protein involved in vacuole import and d	94.43
KOG1008	783	consensus Uncharacterized conserved protein, conta	94.21
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	94.11
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	93.96
KOG3621	726	consensus WD40 repeat-containing protein [General	93.92
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	93.92
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	93.9
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	93.5
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	93.47
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	92.93
PRK13616	591	lipoprotein LpqB; Provisional	92.7
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	92.49
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	92.41
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	92.15
KOG2444	238	consensus WD40 repeat protein [General function pr	91.89
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	91.85
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	91.71
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	91.58
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	91.51
KOG2444	238	consensus WD40 repeat protein [General function pr	91.29
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	91.24
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	91.09
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	91.08
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	90.84
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	90.83
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	90.73
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	90.65
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	90.32
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	90.03
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	89.81
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	89.32
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	89.28
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	89.23
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	89.08
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	88.82
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	87.47
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	87.04
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	86.75
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	85.13
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	84.77
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	82.82
KOG2395	644	consensus Protein involved in vacuole import and d	82.33
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	81.45
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	80.4

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=2e-38  Score=326.82  Aligned_cols=276  Identities=20%  Similarity=0.285  Sum_probs=245.4

Q ss_pred             eeEEEEcCCCceEeeecceeeecCccceeEEEeec---ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcC-
Q 006825          315 WKKVKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSV-  390 (630)
Q Consensus       315 ~~~l~dv~TG~~lt~eef~~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSp-  390 (630)
                      +.|+||..|..++     .++.||...|.+++++|   .||||+.|++|+ +||.++|+++..--.||.+.|.++||-| 
T Consensus       138 TvR~WD~~TeTp~-----~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~-lwdpktg~~~g~~l~gH~K~It~Lawep~  211 (480)
T KOG0271|consen  138 TVRLWDLDTETPL-----FTCKGHKNWVLCVAWSPDGKKIASGSKDGSIR-LWDPKTGQQIGRALRGHKKWITALAWEPL  211 (480)
T ss_pred             eEEeeccCCCCcc-----eeecCCccEEEEEEECCCcchhhccccCCeEE-EecCCCCCcccccccCcccceeEEeeccc
Confidence            3556666777788     89999999999999999   899999999999 9999999987755459999999999976 


Q ss_pred             ----CCCeEEeecCCCC-----Cc------cccCCcceEEEeecCCCe-EEEecCCcEEEEEeCCCCcccceeeeeEecc
Q 006825          391 ----TGHKERRSSDERD-----TS------SEKGGRRSSSATDDSQDV-SFHGQERVRVRQYGKSCKDLTALYKCQEIQA  454 (630)
Q Consensus       391 ----dG~~lasgS~D~d-----t~------s~~gh~~~Vsa~~~s~d~-l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~g  454 (630)
                          ...++|+++.|.+     +.      .+.||+..|+|+....++ +++|+.|++|++|+...+.     ++++|+|
T Consensus       212 hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~gliySgS~DrtIkvw~a~dG~-----~~r~lkG  286 (480)
T KOG0271|consen  212 HLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEGLIYSGSQDRTIKVWRALDGK-----LCRELKG  286 (480)
T ss_pred             ccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCceEEecCCCceEEEEEccchh-----HHHhhcc
Confidence                5678999999982     21      289999999999999777 9999999999999987664     5789999


Q ss_pred             cCcCEEEEEEc-----------cCCC-------------------------EEEEEeCCCcEEEEECcCCc-eeeeeecc
Q 006825          455 HNGSIWSIKFS-----------LDGR-------------------------YLASAGEDCVIHVWQVVESE-RKGELLEK  497 (630)
Q Consensus       455 Ht~~V~sVaFS-----------pDG~-------------------------~LASgS~DgtIrVWDl~tg~-~~~~l~~~  497 (630)
                      |...|+.|+.+           |.|+                         .|+||+.|.++.+|+-...+ ++..    
T Consensus       287 HahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~r----  362 (480)
T KOG0271|consen  287 HAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITR----  362 (480)
T ss_pred             cchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhh----
Confidence            99999999988           2244                         49999999999999975443 4434    


Q ss_pred             cccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeC-CCCceEEeccCCCCEEEEEEc
Q 006825          498 QEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSWS  576 (630)
Q Consensus       498 ~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL~GHs~~V~sLafS  576 (630)
                       ..+|...|..+.|+||+++|++++-|..|                       ++|+. +|+.+.+|.||-..|+.++|+
T Consensus       363 -mtgHq~lVn~V~fSPd~r~IASaSFDkSV-----------------------kLW~g~tGk~lasfRGHv~~VYqvaws  418 (480)
T KOG0271|consen  363 -MTGHQALVNHVSFSPDGRYIASASFDKSV-----------------------KLWDGRTGKFLASFRGHVAAVYQVAWS  418 (480)
T ss_pred             -hhchhhheeeEEECCCccEEEEeecccce-----------------------eeeeCCCcchhhhhhhccceeEEEEec
Confidence             48999999999999999999999999999                       88988 899999999999999999999


Q ss_pred             CC-CeEEEEECCCcEEEEeCCCCcEEEEEe-cCCceEEEE-cCCCcEEEEecceec
Q 006825          577 KS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYDISLV-DRLMLRFAYGAFLNV  629 (630)
Q Consensus       577 Pd-~~LaSgS~DgtVrIWDl~tg~~l~t~~-H~~~V~sVa-s~~~~~lAsgs~~nI  629 (630)
                      .| .+|+|||.|.|+|+|++++.++...+. |.+.|.++. +|++..+++|+.+.+
T Consensus       419 aDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~sggkdkv  474 (480)
T KOG0271|consen  419 ADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVASGGKDKV  474 (480)
T ss_pred             cCccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEecCCCceeecCCCceE
Confidence            99 999999999999999999999999998 999999999 999999999987653

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=7.3e-38  Score=322.62  Aligned_cols=259  Identities=21%  Similarity=0.203  Sum_probs=231.8

Q ss_pred             eeeecCccceeEEEeec---ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCC-----C-
Q 006825          333 EMCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDER-----D-  403 (630)
Q Consensus       333 ~~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~-----d-  403 (630)
                      ..+.||...|-+++|+|   .|||||.|.|+| +||..|..++++.| ||...|.+|+|+|||+.||+|+.+.     + 
T Consensus       109 sS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR-~WD~~TeTp~~t~K-gH~~WVlcvawsPDgk~iASG~~dg~I~lwdp  186 (480)
T KOG0271|consen  109 SSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVR-LWDLDTETPLFTCK-GHKNWVLCVAWSPDGKKIASGSKDGSIRLWDP  186 (480)
T ss_pred             cccCCCCCcEEEEEecCCCceEEecCCCceEE-eeccCCCCcceeec-CCccEEEEEEECCCcchhhccccCCeEEEecC
Confidence            46889999999999999   899999999999 99999999999999 9999999999999999999999987     2 


Q ss_pred             -C-----ccccCCcceEEEeecCCCe-------EEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCE
Q 006825          404 -T-----SSEKGGRRSSSATDDSQDV-------SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRY  470 (630)
Q Consensus       404 -t-----~s~~gh~~~Vsa~~~s~d~-------l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~  470 (630)
                       +     ..++||+..|+++++.+..       +++++.|+.|+|||+..+.     ++..+.||+.+|+||+|--+| +
T Consensus       187 ktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~-----~~~~lsgHT~~VTCvrwGG~g-l  260 (480)
T KOG0271|consen  187 KTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGT-----CVRTLSGHTASVTCVRWGGEG-L  260 (480)
T ss_pred             CCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCce-----EEEEeccCccceEEEEEcCCc-e
Confidence             2     2399999999999988643       7888999999999997663     688899999999999996554 8


Q ss_pred             EEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECC-----------CCC-----------------------
Q 006825          471 LASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSP-----------EPT-----------------------  516 (630)
Q Consensus       471 LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSp-----------dg~-----------------------  516 (630)
                      |+|||.|++||+|+...|.+.++|     .||...|..++.+.           .+.                       
T Consensus       261 iySgS~DrtIkvw~a~dG~~~r~l-----kGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~  335 (480)
T KOG0271|consen  261 IYSGSQDRTIKVWRALDGKLCREL-----KGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDS  335 (480)
T ss_pred             EEecCCCceEEEEEccchhHHHhh-----cccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccC
Confidence            999999999999999999998885     89999999887762           233                       


Q ss_pred             --EEEEeeCCCeeeeecccccccccccccCccccccEEEeC--CCCceEEeccCCCCEEEEEEcCC-CeEEEEECCCcEE
Q 006825          517 --SLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL--SDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVR  591 (630)
Q Consensus       517 --~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl--sgk~l~tL~GHs~~V~sLafSPd-~~LaSgS~DgtVr  591 (630)
                        .+++|++|.++                       .+|+.  +.+++..+.||...|+.+.|||| .++||+|.|+.||
T Consensus       336 ~erlVSgsDd~tl-----------------------flW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVk  392 (480)
T KOG0271|consen  336 GERLVSGSDDFTL-----------------------FLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVK  392 (480)
T ss_pred             cceeEEecCCceE-----------------------EEecccccccchhhhhchhhheeeEEECCCccEEEEeeccccee
Confidence              37777777777                       77776  56789999999999999999999 9999999999999


Q ss_pred             EEeCCCCcEEEEEe-cCCceEEEE-cCCCcEEEEecce
Q 006825          592 LWHLSSKTCLKIFS-HSDYDISLV-DRLMLRFAYGAFL  627 (630)
Q Consensus       592 IWDl~tg~~l~t~~-H~~~V~sVa-s~~~~~lAsgs~~  627 (630)
                      |||.++|+.+.+|. |-+.|+.|+ +.+...+.+++.+
T Consensus       393 LW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkD  430 (480)
T KOG0271|consen  393 LWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVSGSKD  430 (480)
T ss_pred             eeeCCCcchhhhhhhccceeEEEEeccCccEEEEcCCC
Confidence            99999999999999 999999999 8888888888765

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=6.9e-37  Score=318.90  Aligned_cols=257  Identities=22%  Similarity=0.231  Sum_probs=232.0

Q ss_pred             EEECCCCcEEEEeeecCCCceeEEEEcCCCceEeeecceeeecCccceeEEEeec-----ceEeecCCCccEecccCCCC
Q 006825          295 IKNLDNGKEFVVNEIQEDGTWKKVKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQ-----NVEEGNKDSFDLNNNGSSGG  369 (630)
Q Consensus       295 I~~LddG~~~~v~e~~~dg~~~~l~dv~TG~~lt~eef~~l~GHs~~V~~Lafs~-----~laSgS~D~tvr~vWD~~tG  369 (630)
                      .....|++.+++...  +|. .++|.+.++..+     ++|.||+..|.++.|+|     .|||++.|++++ +|++.+-
T Consensus       181 ~~fS~ds~~laT~sw--sG~-~kvW~~~~~~~~-----~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvk-lw~~~~e  251 (459)
T KOG0272|consen  181 CSFSRDSKHLATGSW--SGL-VKVWSVPQCNLL-----QTLRGHTSRVGAAVFHPVDSDLNLATASADGTVK-LWKLSQE  251 (459)
T ss_pred             eEeecCCCeEEEeec--CCc-eeEeecCCccee-----EEEeccccceeeEEEccCCCccceeeeccCCcee-eeccCCC
Confidence            334455666665555  333 568888888667     99999999999999999     699999999999 9999999


Q ss_pred             ceeEEecCCccCCEEEEEEcCCCCeEEeecCCC-----C--Ccc----ccCCcceEEEeecCCCe--EEEecCCcEEEEE
Q 006825          370 GMKSKKKGSWFKSIRTVASSVTGHKERRSSDER-----D--TSS----EKGGRRSSSATDDSQDV--SFHGQERVRVRQY  436 (630)
Q Consensus       370 ~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~-----d--t~s----~~gh~~~Vsa~~~s~d~--l~Sgs~Dg~VriW  436 (630)
                      ..+..+. ||..+|-.|||.|+|++|+|++.|.     |  ++.    ..||...|.+++|.++|  +++|+.|..-|+|
T Consensus       252 ~~l~~l~-gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvW  330 (459)
T KOG0272|consen  252 TPLQDLE-GHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVW  330 (459)
T ss_pred             cchhhhh-cchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhhee
Confidence            9999999 9999999999999999999999998     2  332    89999999999999999  7899999999999


Q ss_pred             eCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECC-CC
Q 006825          437 GKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSP-EP  515 (630)
Q Consensus       437 d~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSp-dg  515 (630)
                      |+.++.     ++..|.||...|.+|+|+|+|..|||||.|+++||||++....+.++     .+|.+.|..|.|+| .|
T Consensus       331 DlRtgr-----~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~i-----pAH~nlVS~Vk~~p~~g  400 (459)
T KOG0272|consen  331 DLRTGR-----CIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTI-----PAHSNLVSQVKYSPQEG  400 (459)
T ss_pred             ecccCc-----EEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceec-----ccccchhhheEecccCC
Confidence            998885     78899999999999999999999999999999999999988877664     89999999999999 59


Q ss_pred             CEEEEeeCCCeeeeecccccccccccccCccccccEEEeC-CCCceEEeccCCCCEEEEEEcCC-CeEEEEECCCcEEEE
Q 006825          516 TSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLW  593 (630)
Q Consensus       516 ~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL~GHs~~V~sLafSPd-~~LaSgS~DgtVrIW  593 (630)
                      .+|++++.|.++                       ++|.. +..++++|.||.+.|.++..+++ ++++|++.|.|||+|
T Consensus       401 ~fL~TasyD~t~-----------------------kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW  457 (459)
T KOG0272|consen  401 YFLVTASYDNTV-----------------------KIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLW  457 (459)
T ss_pred             eEEEEcccCcce-----------------------eeecCCCcccchhhcCCccceEEEEeccCCceEEEeccCceeeec
Confidence            999999999999                       77777 77999999999999999999999 999999999999999


Q ss_pred             e
Q 006825          594 H  594 (630)
Q Consensus       594 D  594 (630)
                      .
T Consensus       458 ~  458 (459)
T KOG0272|consen  458 R  458 (459)
T ss_pred             c
Confidence            5

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=8.8e-36  Score=332.15  Aligned_cols=316  Identities=41%  Similarity=0.640  Sum_probs=203.6

Q ss_pred             CCCCcEEEEeeecCCCceeEEEEcCCCceEeeecceeeecCccceeEEEeecceEeecCCCccEecc--cCCCC---cee
Q 006825          298 LDNGKEFVVNEIQEDGTWKKVKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQNVEEGNKDSFDLNNN--GSSGG---GMK  372 (630)
Q Consensus       298 LddG~~~~v~e~~~dg~~~~l~dv~TG~~lt~eef~~l~GHs~~V~~Lafs~~laSgS~D~tvr~vW--D~~tG---~~~  372 (630)
                      ++.|++++|.+...++.|.++.|++++..+++|+|+...|+...|.+++....+-   .+.... -.  ++...   ...
T Consensus       106 ~~~~~e~~v~e~~~~~~~~~~sd~~~~~~~~~e~~e~~~g~~~~v~~l~~~~~~~---~~~~~~-~~~~~~s~s~~~~~~  181 (712)
T KOG0283|consen  106 LDTGDEFSVSENPEDGSVNRLSDVGTGASSTLEELESSPGESSRVKELGDRENAD---LDEMLT-KYNDDVSGSVLLRKS  181 (712)
T ss_pred             ecccceeeEeeccCccccccccCCCcccccccccccCCcCcccchhhhhhhcccc---cchhhc-ccccccccccccchh
Confidence            6999999999999999999999999999999999999999999999998866331   111111 00  01001   001


Q ss_pred             EEecCCccCCEEEEEEcCCCCeEEe-ecCCCCCccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeE
Q 006825          373 SKKKGSWFKSIRTVASSVTGHKERR-SSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQE  451 (630)
Q Consensus       373 ~~lk~gH~~~V~sVAfSpdG~~las-gS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~t  451 (630)
                      .+....+...++.++-..++...-. ..++.+.....++...-.........-+......+++-+.+..+++..++..|.
T Consensus       182 ~r~~~~~l~~~k~~~~~~s~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~rvkv~~~~K~~kelsal~~~Qe  261 (712)
T KOG0283|consen  182 KRYGKRWLKSLKVVAHSLSSLSENRRSRFDSDSSSQFHNYLSEPKSSKDKEMKYNLPSRVKVRHYKKSPKELSALTVVQE  261 (712)
T ss_pred             hhhhhhhhhhccccccccccccccccccccccchhcccccccccccccccccccCCcceEEecccCCCcccceeeEEeec
Confidence            1111146666766666655431100 011111111111111111111111111222245567778888889999999999


Q ss_pred             ec-ccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeee
Q 006825          452 IQ-AHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKK  530 (630)
Q Consensus       452 L~-gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~  530 (630)
                      +. +|.++||+|.||+||+||||||+|+.||||.+...+....-     .+....+. ......+..-...+..+.+   
T Consensus       262 ~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~-----~~~~~~~~-~~~~~~s~~~p~~s~~~~~---  332 (712)
T KOG0283|consen  262 ISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVA-----EGDSSCMY-FEYNANSQIEPSTSSEEKI---  332 (712)
T ss_pred             cccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhccc-----ccccchhh-hhhhhccccCccccccccc---
Confidence            99 99999999999999999999999999999999765442210     11111110 0000011111111111111   


Q ss_pred             cccc-cccccccccCccccccEEEeCCCCceEEeccCCCCEEEEEEcCCCeEEEEECCCcEEEEeCCCCcEEEEEecCCc
Q 006825          531 RRGR-SINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFSHSDY  609 (630)
Q Consensus       531 ~~~~-~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL~GHs~~V~sLafSPd~~LaSgS~DgtVrIWDl~tg~~l~t~~H~~~  609 (630)
                       ..+ ..............+.+++.+..++++.|.||.+.|++|+||.+++|+|+|+|+|||||++...+||++|.|.++
T Consensus       333 -~~~~s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~fLLSSSMDKTVRLWh~~~~~CL~~F~Hndf  411 (712)
T KOG0283|consen  333 -SSRTSSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNNFLLSSSMDKTVRLWHPGRKECLKVFSHNDF  411 (712)
T ss_pred             -cccccccccccCCccccCCCccccccccchhhhhccchhheecccccCCeeEeccccccEEeecCCCcceeeEEecCCe
Confidence             001 111222223334566688888999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEEE-cC-CCcEEEEecce
Q 006825          610 DISLV-DR-LMLRFAYGAFL  627 (630)
Q Consensus       610 V~sVa-s~-~~~~lAsgs~~  627 (630)
                      |+||+ +| +..+|++|+.+
T Consensus       412 VTcVaFnPvDDryFiSGSLD  431 (712)
T KOG0283|consen  412 VTCVAFNPVDDRYFISGSLD  431 (712)
T ss_pred             eEEEEecccCCCcEeecccc
Confidence            99999 44 66777777644

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=7.3e-35  Score=303.80  Aligned_cols=261  Identities=18%  Similarity=0.169  Sum_probs=239.3

Q ss_pred             eeeecCccceeEEEeec---ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCC--CCeEEeecCCC-----
Q 006825          333 EMCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVT--GHKERRSSDER-----  402 (630)
Q Consensus       333 ~~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpd--G~~lasgS~D~-----  402 (630)
                      ..-+|-+..|....|+.   .|||||++++++ ||.+.++..+.+|+ ||...|.++.|+|.  +.-++|++.|+     
T Consensus       169 ~SQ~gd~rPis~~~fS~ds~~laT~swsG~~k-vW~~~~~~~~~~l~-gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw  246 (459)
T KOG0272|consen  169 CSQVGDTRPISGCSFSRDSKHLATGSWSGLVK-VWSVPQCNLLQTLR-GHTSRVGAAVFHPVDSDLNLATASADGTVKLW  246 (459)
T ss_pred             hhhccCCCcceeeEeecCCCeEEEeecCCcee-EeecCCcceeEEEe-ccccceeeEEEccCCCccceeeeccCCceeee
Confidence            33456677788888887   799999999999 99999999999999 99999999999996  67899999998     


Q ss_pred             --C----CccccCCcceEEEeecCCCe--EEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEE
Q 006825          403 --D----TSSEKGGRRSSSATDDSQDV--SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASA  474 (630)
Q Consensus       403 --d----t~s~~gh~~~Vsa~~~s~d~--l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASg  474 (630)
                        +    ...+.||...|..++|.+.|  +.+++.|.+-|+||+.++..     +....||...|.+|+|.+||.+++||
T Consensus       247 ~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~E-----lL~QEGHs~~v~~iaf~~DGSL~~tG  321 (459)
T KOG0272|consen  247 KLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSE-----LLLQEGHSKGVFSIAFQPDGSLAATG  321 (459)
T ss_pred             ccCCCcchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchh-----hHhhcccccccceeEecCCCceeecc
Confidence              1    23389999999999999999  99999999999999998853     34468999999999999999999999


Q ss_pred             eCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEe
Q 006825          475 GEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFA  554 (630)
Q Consensus       475 S~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwd  554 (630)
                      |.|..-||||+++|.++..|     .+|...|..|+|+|.|..+++|+.|+++                       +||+
T Consensus       322 GlD~~~RvWDlRtgr~im~L-----~gH~k~I~~V~fsPNGy~lATgs~Dnt~-----------------------kVWD  373 (459)
T KOG0272|consen  322 GLDSLGRVWDLRTGRCIMFL-----AGHIKEILSVAFSPNGYHLATGSSDNTC-----------------------KVWD  373 (459)
T ss_pred             CccchhheeecccCcEEEEe-----cccccceeeEeECCCceEEeecCCCCcE-----------------------EEee
Confidence            99999999999999999885     8999999999999999999999999999                       8888


Q ss_pred             C-CCCceEEeccCCCCEEEEEEcCC--CeEEEEECCCcEEEEeCCCCcEEEEEe-cCCceEEEE-cCCCcEEEEeccee
Q 006825          555 L-SDKPICSFQGHLDDVLDLSWSKS--QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYDISLV-DRLMLRFAYGAFLN  628 (630)
Q Consensus       555 l-sgk~l~tL~GHs~~V~sLafSPd--~~LaSgS~DgtVrIWDl~tg~~l~t~~-H~~~V~sVa-s~~~~~lAsgs~~n  628 (630)
                      + ..+++.++.+|.+.|+.|.|+|.  .+|+|+|.|++++||...+.++++++. |.+.|.++. ++++.+++++++++
T Consensus       374 LR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DR  452 (459)
T KOG0272|consen  374 LRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDR  452 (459)
T ss_pred             ecccccceecccccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCccceEEEEeccCCceEEEeccCc
Confidence            8 55778999999999999999996  889999999999999999999999998 999999999 99999999998874

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=2.4e-32  Score=302.65  Aligned_cols=282  Identities=18%  Similarity=0.200  Sum_probs=230.8

Q ss_pred             eeecCCCCcccCCCccccccCCCCCcccccccEEEEECCCCcE-------EEEee--ecCCCceeEEEEcCCCceEeeec
Q 006825          261 MSINGNGNYIGNSGEVVEDFDGNGTAGVAEQGCLIKNLDNGKE-------FVVNE--IQEDGTWKKVKEVGTGRQLTIEE  331 (630)
Q Consensus       261 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~LddG~~-------~~v~e--~~~dg~~~~l~dv~TG~~lt~ee  331 (630)
                      .-||+|+++|              |-+=.+...++|.|+.-+.       .+...  +..|-. ..+-|..++-..    
T Consensus       384 a~fSddssml--------------A~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~-~~~~D~~~~~~~----  444 (707)
T KOG0263|consen  384 AEFSDDSSML--------------ACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVD-VDMLDDDSSGTS----  444 (707)
T ss_pred             EeecCCcchh--------------hccccccEEEEEecchhhhccccchhhhccccccccchh-hhhccccCCcee----
Confidence            5899999988              4445556789999875431       11111  111111 122233333333    


Q ss_pred             ceeeecCccceeEEEeec---ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCcccc
Q 006825          332 FEMCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEK  408 (630)
Q Consensus       332 f~~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~  408 (630)
                       .++.||+++|....|+|   +|+|+|.|.++| +|.+.|-.++-..+ ||..+|..|.|+|-|.|+||+          
T Consensus       445 -~~L~GH~GPVyg~sFsPd~rfLlScSED~svR-LWsl~t~s~~V~y~-GH~~PVwdV~F~P~GyYFata----------  511 (707)
T KOG0263|consen  445 -RTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVR-LWSLDTWSCLVIYK-GHLAPVWDVQFAPRGYYFATA----------  511 (707)
T ss_pred             -EEeecCCCceeeeeecccccceeeccCCccee-eeecccceeEEEec-CCCcceeeEEecCCceEEEec----------
Confidence             56999999999999999   899999999999 99999999999999 999999999999999888654          


Q ss_pred             CCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCC
Q 006825          409 GGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVES  488 (630)
Q Consensus       409 gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg  488 (630)
                                         +.|++.++|.....     +..+.+.||-.-|.|++|+|+..|+||||.|++||+||+.+|
T Consensus       512 -------------------s~D~tArLWs~d~~-----~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G  567 (707)
T KOG0263|consen  512 -------------------SHDQTARLWSTDHN-----KPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTG  567 (707)
T ss_pred             -------------------CCCceeeeeecccC-----CchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCC
Confidence                               55667899987654     357889999999999999999999999999999999999999


Q ss_pred             ceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeC-CCCceEEeccCC
Q 006825          489 ERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHL  567 (630)
Q Consensus       489 ~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL~GHs  567 (630)
                      ..++.+     .||..+|.+++|+|+|++|++|+.|+.|                       .+|++ +++++.+|.+|+
T Consensus       568 ~~VRiF-----~GH~~~V~al~~Sp~Gr~LaSg~ed~~I-----------------------~iWDl~~~~~v~~l~~Ht  619 (707)
T KOG0263|consen  568 NSVRIF-----TGHKGPVTALAFSPCGRYLASGDEDGLI-----------------------KIWDLANGSLVKQLKGHT  619 (707)
T ss_pred             cEEEEe-----cCCCCceEEEEEcCCCceEeecccCCcE-----------------------EEEEcCCCcchhhhhccc
Confidence            998884     8999999999999999999999999999                       89998 789999999999


Q ss_pred             CCEEEEEEcCC-CeEEEEECCCcEEEEeCCCCc------------------------EEEEEe-cCCceEEEE-cCCCcE
Q 006825          568 DDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKT------------------------CLKIFS-HSDYDISLV-DRLMLR  620 (630)
Q Consensus       568 ~~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg~------------------------~l~t~~-H~~~V~sVa-s~~~~~  620 (630)
                      +.|.+|.|+.+ ..||+|+.|.+|++||+..-.                        ++.+|. ...+|.+|. ....+.
T Consensus       620 ~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llgs~~tK~tpv~~l~FtrrNl~  699 (707)
T KOG0263|consen  620 GTIYSLSFSRDGNVLASGGADNSVRLWDLTKVIELLNLGHISTSNSAITQENNASSLLLGSFYTKNTPVVGLHFTRRNLL  699 (707)
T ss_pred             CceeEEEEecCCCEEEecCCCCeEEEEEchhhcccccccccccccccccccCCCCcceeeeeeecCceEEEEEEecccee
Confidence            99999999999 999999999999999986422                        455665 666777777 444466


Q ss_pred             EEEecc
Q 006825          621 FAYGAF  626 (630)
Q Consensus       621 lAsgs~  626 (630)
                      ++.|.+
T Consensus       700 L~~g~~  705 (707)
T KOG0263|consen  700 LAVGPF  705 (707)
T ss_pred             EEeccc
Confidence            666543

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=6.9e-32  Score=277.45  Aligned_cols=263  Identities=18%  Similarity=0.250  Sum_probs=238.5

Q ss_pred             ecceeeecCccceeEEEeec---ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCC---
Q 006825          330 EEFEMCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERD---  403 (630)
Q Consensus       330 eef~~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~d---  403 (630)
                      .+.+.+.||...|+.+.|+|   .+++++.|.|++ +||..||+....++ ||++.|..|+|+..|+++++.|.|-.   
T Consensus        99 ~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tik-v~D~~tg~~e~~Lr-GHt~sv~di~~~a~Gk~l~tcSsDl~~~L  176 (406)
T KOG0295|consen   99 NLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIK-VFDTETGELERSLR-GHTDSVFDISFDASGKYLATCSSDLSAKL  176 (406)
T ss_pred             CchhhhhccccceeeeeeccCceEEEEecCCceEE-EEEccchhhhhhhh-ccccceeEEEEecCccEEEecCCccchhh
Confidence            45578899999999999999   788999999999 99999999999999 99999999999999999999998861   


Q ss_pred             ---------CccccCCcceEEEeecCCCe--EEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEE
Q 006825          404 ---------TSSEKGGRRSSSATDDSQDV--SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLA  472 (630)
Q Consensus       404 ---------t~s~~gh~~~Vsa~~~s~d~--l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LA  472 (630)
                               ...+.||...|+++.|-|.+  +++++.|.+|+.|+..++     +++.+|.+|...|.-++.+.||.++|
T Consensus       177 Wd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg-----~cv~t~~~h~ewvr~v~v~~DGti~A  251 (406)
T KOG0295|consen  177 WDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTG-----YCVKTFPGHSEWVRMVRVNQDGTIIA  251 (406)
T ss_pred             eeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccc-----eeEEeccCchHhEEEEEecCCeeEEE
Confidence                     23388999999999998877  999999999999988776     68999999999999999999999999


Q ss_pred             EEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCC---------------CCEEEEeeCCCeeeeeccccccc
Q 006825          473 SAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPE---------------PTSLSPKHLDNHLEKKRRGRSIN  537 (630)
Q Consensus       473 SgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpd---------------g~~lasgs~Dg~I~i~~~~~~~~  537 (630)
                      +++.|.+|++|-+.++++..++     .+|..+|-+++|.|.               +.++.+++.|++|          
T Consensus       252 s~s~dqtl~vW~~~t~~~k~~l-----R~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktI----------  316 (406)
T KOG0295|consen  252 SCSNDQTLRVWVVATKQCKAEL-----REHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTI----------  316 (406)
T ss_pred             ecCCCceEEEEEeccchhhhhh-----hccccceEEEEecccccCcchhhccCCCCCccEEEeecccceE----------
Confidence            9999999999999999888774     899999999999764               2467777777777          


Q ss_pred             ccccccCccccccEEEeC-CCCceEEeccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCCCcEEEEEe-cCCceEEEE
Q 006825          538 RKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYDISLV  614 (630)
Q Consensus       538 ~~s~s~d~~i~~~~Vwdl-sgk~l~tL~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg~~l~t~~-H~~~V~sVa  614 (630)
                                   ++|++ ++.++.+|.||...|..++|+|. +||+|+..|+++|+||+.+++|.+++. |...|+++.
T Consensus       317 -------------k~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lD  383 (406)
T KOG0295|consen  317 -------------KIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLD  383 (406)
T ss_pred             -------------EEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEe
Confidence                         89999 89999999999999999999999 999999999999999999999999999 999999999


Q ss_pred             -cCCCcEEEEecce
Q 006825          615 -DRLMLRFAYGAFL  627 (630)
Q Consensus       615 -s~~~~~lAsgs~~  627 (630)
                       +.+..+..+|+.+
T Consensus       384 fh~~~p~VvTGsVd  397 (406)
T KOG0295|consen  384 FHKTAPYVVTGSVD  397 (406)
T ss_pred             cCCCCceEEecccc
Confidence             5555577777644

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=1.3e-30  Score=262.01  Aligned_cols=260  Identities=16%  Similarity=0.166  Sum_probs=237.4

Q ss_pred             eeeecCccceeEEEeec---ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCC-------
Q 006825          333 EMCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDER-------  402 (630)
Q Consensus       333 ~~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~-------  402 (630)
                      .+|.||...|.++-|++   .++|+|.|+.+. |||.-|....+-+. --...|..+||+|.|+++|.|+-|.       
T Consensus        49 r~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklI-vWDs~TtnK~haip-l~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~l  126 (343)
T KOG0286|consen   49 RTLKGHLNKIYAMDWSTDSRRIVSASQDGKLI-VWDSFTTNKVHAIP-LPSSWVMTCAYSPSGNFVACGGLDNKCSIYPL  126 (343)
T ss_pred             EEecccccceeeeEecCCcCeEEeeccCCeEE-EEEcccccceeEEe-cCceeEEEEEECCCCCeEEecCcCceeEEEec
Confidence            67899999999999998   899999999999 99999998888777 6788999999999999999998876       


Q ss_pred             C----------CccccCCcceEEEeecCCCe-EEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEcc-CCCE
Q 006825          403 D----------TSSEKGGRRSSSATDDSQDV-SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSL-DGRY  470 (630)
Q Consensus       403 d----------t~s~~gh~~~Vsa~~~s~d~-l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSp-DG~~  470 (630)
                      .          ...+.+|..-+++..|-.+. +++++.|.+.-+||+++++     .++.|.||++-|.+|+++| +++.
T Consensus       127 s~~d~~g~~~v~r~l~gHtgylScC~f~dD~~ilT~SGD~TCalWDie~g~-----~~~~f~GH~gDV~slsl~p~~~nt  201 (343)
T KOG0286|consen  127 STRDAEGNVRVSRELAGHTGYLSCCRFLDDNHILTGSGDMTCALWDIETGQ-----QTQVFHGHTGDVMSLSLSPSDGNT  201 (343)
T ss_pred             ccccccccceeeeeecCccceeEEEEEcCCCceEecCCCceEEEEEcccce-----EEEEecCCcccEEEEecCCCCCCe
Confidence            1          12289999999999999998 9999999999999998875     5788999999999999999 9999


Q ss_pred             EEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCcccccc
Q 006825          471 LASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPE  550 (630)
Q Consensus       471 LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~  550 (630)
                      ++||+.|++.+|||++.+.+.+.+     .+|..-|.+|.|.|+|.-+++|++|++.                       
T Consensus       202 FvSg~cD~~aklWD~R~~~c~qtF-----~ghesDINsv~ffP~G~afatGSDD~tc-----------------------  253 (343)
T KOG0286|consen  202 FVSGGCDKSAKLWDVRSGQCVQTF-----EGHESDINSVRFFPSGDAFATGSDDATC-----------------------  253 (343)
T ss_pred             EEecccccceeeeeccCcceeEee-----cccccccceEEEccCCCeeeecCCCcee-----------------------
Confidence            999999999999999999999884     8999999999999999999999999999                       


Q ss_pred             EEEeC-CCCceEEecc--CCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCCCcEEEEEe-cCCceEEEE-cCCCcEEEEe
Q 006825          551 TVFAL-SDKPICSFQG--HLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYDISLV-DRLMLRFAYG  624 (630)
Q Consensus       551 ~Vwdl-sgk~l~tL~G--Hs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg~~l~t~~-H~~~V~sVa-s~~~~~lAsg  624 (630)
                      ++|++ ..+.+..|..  -...|++++||.. .+|..|..|.++.+||.-.++.+..+. |.+.|.||. .|++..+++|
T Consensus       254 RlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~Tg  333 (343)
T KOG0286|consen  254 RLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATG  333 (343)
T ss_pred             EEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEec
Confidence            78888 6677777763  2357899999999 888899999999999999999999998 999999999 9999999999


Q ss_pred             cce
Q 006825          625 AFL  627 (630)
Q Consensus       625 s~~  627 (630)
                      +++
T Consensus       334 SWD  336 (343)
T KOG0286|consen  334 SWD  336 (343)
T ss_pred             chh
Confidence            876

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=6.6e-31  Score=262.80  Aligned_cols=259  Identities=17%  Similarity=0.166  Sum_probs=223.8

Q ss_pred             eeeecCccceeEEEeec----ceEeecCCCccEecccC-----CCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCC-
Q 006825          333 EMCVGHSPIVQELMRRQ----NVEEGNKDSFDLNNNGS-----SGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDER-  402 (630)
Q Consensus       333 ~~l~GHs~~V~~Lafs~----~laSgS~D~tvr~vWD~-----~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~-  402 (630)
                      .+|.||.+.|++++..+    .+.++|.|+++. +|++     +.|..++.++ ||...|..|+.++||++..+++.|+ 
T Consensus         9 ~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii-~W~L~~dd~~~G~~~r~~~-GHsH~v~dv~~s~dg~~alS~swD~~   86 (315)
T KOG0279|consen    9 GTLEGHTDWVTALAIKIKNSDILVSASRDKTII-VWKLTSDDIKYGVPVRRLT-GHSHFVSDVVLSSDGNFALSASWDGT   86 (315)
T ss_pred             eeecCCCceEEEEEeecCCCceEEEcccceEEE-EEEeccCccccCceeeeee-ccceEecceEEccCCceEEeccccce
Confidence            68999999999999877    799999999999 9975     4588899999 8999999999999999999999998 


Q ss_pred             ----C------CccccCCcceEEEeecCCCe--EEEecCCcEEEEEeCCCCcccceeeeeEeccc--CcCEEEEEEccC-
Q 006825          403 ----D------TSSEKGGRRSSSATDDSQDV--SFHGQERVRVRQYGKSCKDLTALYKCQEIQAH--NGSIWSIKFSLD-  467 (630)
Q Consensus       403 ----d------t~s~~gh~~~Vsa~~~s~d~--l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gH--t~~V~sVaFSpD-  467 (630)
                          |      +..+.||...|.+++|+++.  +++|+.|.+|++|+..+.      +..++..+  .+.|.|+.|+|. 
T Consensus        87 lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~------ck~t~~~~~~~~WVscvrfsP~~  160 (315)
T KOG0279|consen   87 LRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGV------CKYTIHEDSHREWVSCVRFSPNE  160 (315)
T ss_pred             EEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeeccc------EEEEEecCCCcCcEEEEEEcCCC
Confidence                2      23399999999999999988  999999999999998665      44555544  789999999997 


Q ss_pred             -CCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCcc
Q 006825          468 -GRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHM  546 (630)
Q Consensus       468 -G~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~  546 (630)
                       ..+|+++|+|++|||||+.+.+....     +.||.+.+..++++|||.++++|+.|+.+                   
T Consensus       161 ~~p~Ivs~s~DktvKvWnl~~~~l~~~-----~~gh~~~v~t~~vSpDGslcasGgkdg~~-------------------  216 (315)
T KOG0279|consen  161 SNPIIVSASWDKTVKVWNLRNCQLRTT-----FIGHSGYVNTVTVSPDGSLCASGGKDGEA-------------------  216 (315)
T ss_pred             CCcEEEEccCCceEEEEccCCcchhhc-----cccccccEEEEEECCCCCEEecCCCCceE-------------------
Confidence             67999999999999999998887766     48999999999999999999999999999                   


Q ss_pred             ccccEEEeC-CCCceEEeccCCCCEEEEEEcCCCeEEEEECCCcEEEEeCCCCcEEEEEe--c------CCceEEEE---
Q 006825          547 VVPETVFAL-SDKPICSFQGHLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFS--H------SDYDISLV---  614 (630)
Q Consensus       547 i~~~~Vwdl-sgk~l~tL~GHs~~V~sLafSPd~~LaSgS~DgtVrIWDl~tg~~l~t~~--H------~~~V~sVa---  614 (630)
                          .+|++ .++.+.+| +|...|.+++|+|+.|.+.+..+..|+|||+.++.++..++  -      .+.+.|+.   
T Consensus       217 ----~LwdL~~~k~lysl-~a~~~v~sl~fspnrywL~~at~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaw  291 (315)
T KOG0279|consen  217 ----MLWDLNEGKNLYSL-EAFDIVNSLCFSPNRYWLCAATATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAW  291 (315)
T ss_pred             ----EEEEccCCceeEec-cCCCeEeeEEecCCceeEeeccCCceEEEeccchhhhhhccccccccccccCCcEEEEEEE
Confidence                88898 56776665 58899999999999888888888889999999999998885  1      12455555   


Q ss_pred             cCCCcEEEEeccee
Q 006825          615 DRLMLRFAYGAFLN  628 (630)
Q Consensus       615 s~~~~~lAsgs~~n  628 (630)
                      ++++..|-.|-..+
T Consensus       292 s~dG~tLf~g~td~  305 (315)
T KOG0279|consen  292 SADGQTLFAGYTDN  305 (315)
T ss_pred             cCCCcEEEeeecCC
Confidence            77788877775554

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.97  E-value=9.2e-30  Score=279.82  Aligned_cols=275  Identities=15%  Similarity=0.188  Sum_probs=238.2

Q ss_pred             EEEEcCCCceEeeecceeeecCccceeEEEeec----ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCC
Q 006825          317 KVKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQ----NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTG  392 (630)
Q Consensus       317 ~l~dv~TG~~lt~eef~~l~GHs~~V~~Lafs~----~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG  392 (630)
                      .+.|..+.+..     ..++|....|..+.|-.    .||.+++-+-+| +++..+-.+. .+. ||...|.+++...+|
T Consensus       306 ~l~d~~~l~i~-----k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr-~y~~~~~~c~-ii~-GH~e~vlSL~~~~~g  377 (775)
T KOG0319|consen  306 FLYDEDELTIV-----KQIVGYNDEILDMKFLGPEESHLAVATNSPELR-LYTLPTSYCQ-IIP-GHTEAVLSLDVWSSG  377 (775)
T ss_pred             EEEEccccEEe-----hhhcCCchhheeeeecCCccceEEEEeCCCceE-EEecCCCceE-EEe-CchhheeeeeecccC
Confidence            34555666666     77899999999999975    899999999999 9998887777 455 999999999977888


Q ss_pred             CeEEeecCCCC---------------CccccCCcceEEEeecCCCe---EEEecCCcEEEEEeCCCCcccc----eeeee
Q 006825          393 HKERRSSDERD---------------TSSEKGGRRSSSATDDSQDV---SFHGQERVRVRQYGKSCKDLTA----LYKCQ  450 (630)
Q Consensus       393 ~~lasgS~D~d---------------t~s~~gh~~~Vsa~~~s~d~---l~Sgs~Dg~VriWd~~~~el~~----~~~v~  450 (630)
                      -+|+|+|.|+.               ...-.||.+.|.+++++..+   +++++.|.++++|++...+...    +.+..
T Consensus       378 ~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~  457 (775)
T KOG0319|consen  378 DLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRY  457 (775)
T ss_pred             cEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhH
Confidence            99999999981               12268899999999997665   8999999999999986522111    11223


Q ss_pred             EecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeee
Q 006825          451 EIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKK  530 (630)
Q Consensus       451 tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~  530 (630)
                      +...|..-|+||+++|+.++|||||+|+++|||++++......|     .||...|++|.|+|..+.+++++.|++|   
T Consensus       458 t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vL-----sGH~RGvw~V~Fs~~dq~laT~SgD~Tv---  529 (775)
T KOG0319|consen  458 TERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVL-----SGHTRGVWCVSFSKNDQLLATCSGDKTV---  529 (775)
T ss_pred             HHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEe-----eCCccceEEEEeccccceeEeccCCceE---
Confidence            45689999999999999999999999999999999977777774     9999999999999999999999999999   


Q ss_pred             cccccccccccccCccccccEEEeC-CCCceEEeccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCCCcEEEEEe-cC
Q 006825          531 RRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-HS  607 (630)
Q Consensus       531 ~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg~~l~t~~-H~  607 (630)
                                          +||.+ +..++++|.||+..|..+.|-.+ .+|+|++.||-||||++.+++|++++. |.
T Consensus       530 --------------------KIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~  589 (775)
T KOG0319|consen  530 --------------------KIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHN  589 (775)
T ss_pred             --------------------EEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhcc
Confidence                                88988 78999999999999999999888 999999999999999999999999998 99


Q ss_pred             CceEEEE-cCCCcEEEEecce
Q 006825          608 DYDISLV-DRLMLRFAYGAFL  627 (630)
Q Consensus       608 ~~V~sVa-s~~~~~lAsgs~~  627 (630)
                      +.||+++ .+....+++|+.+
T Consensus       590 DrvWaL~~~~~~~~~~tgg~D  610 (775)
T KOG0319|consen  590 DRVWALSVSPLLDMFVTGGGD  610 (775)
T ss_pred             ceeEEEeecCccceeEecCCC
Confidence            9999999 7777788877654

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=99.97  E-value=3.8e-29  Score=250.26  Aligned_cols=234  Identities=19%  Similarity=0.221  Sum_probs=197.6

Q ss_pred             cCCCceEeeecceeeecCccceeEEEeec---ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEe
Q 006825          321 VGTGRQLTIEEFEMCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERR  397 (630)
Q Consensus       321 v~TG~~lt~eef~~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~las  397 (630)
                      ...|.++     ..|.||+-.|..++.++   +.+|+|+|+++| +||+++|+..+.|. ||.+-|.+|||++|...+++
T Consensus        50 ~~~G~~~-----r~~~GHsH~v~dv~~s~dg~~alS~swD~~lr-lWDl~~g~~t~~f~-GH~~dVlsva~s~dn~qivS  122 (315)
T KOG0279|consen   50 IKYGVPV-----RRLTGHSHFVSDVVLSSDGNFALSASWDGTLR-LWDLATGESTRRFV-GHTKDVLSVAFSTDNRQIVS  122 (315)
T ss_pred             cccCcee-----eeeeccceEecceEEccCCceEEeccccceEE-EEEecCCcEEEEEE-ecCCceEEEEecCCCceeec
Confidence            3477888     89999999999999998   899999999999 99999999999999 99999999999999999999


Q ss_pred             ecCCC-----CC-------ccccCCcceEEEeecCCCe----EEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEE
Q 006825          398 SSDER-----DT-------SSEKGGRRSSSATDDSQDV----SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWS  461 (630)
Q Consensus       398 gS~D~-----dt-------~s~~gh~~~Vsa~~~s~d~----l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~s  461 (630)
                      ||.|+     ++       ....+++..|+|+.|+|.-    +++++.|++|++||+.+-++     .+.+.||++.|+.
T Consensus       123 GSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l-----~~~~~gh~~~v~t  197 (315)
T KOG0279|consen  123 GSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQL-----RTTFIGHSGYVNT  197 (315)
T ss_pred             CCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcch-----hhccccccccEEE
Confidence            99998     22       1133448899999999873    89999999999999977653     5778899999999


Q ss_pred             EEEccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeeccccccccccc
Q 006825          462 IKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSL  541 (630)
Q Consensus       462 VaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~  541 (630)
                      +++||||.++++|+.||.+.+||++.++.+..      .+|...|.+++|+|.-..|+.+ .+..|              
T Consensus       198 ~~vSpDGslcasGgkdg~~~LwdL~~~k~lys------l~a~~~v~sl~fspnrywL~~a-t~~sI--------------  256 (315)
T KOG0279|consen  198 VTVSPDGSLCASGGKDGEAMLWDLNEGKNLYS------LEAFDIVNSLCFSPNRYWLCAA-TATSI--------------  256 (315)
T ss_pred             EEECCCCCEEecCCCCceEEEEEccCCceeEe------ccCCCeEeeEEecCCceeEeec-cCCce--------------
Confidence            99999999999999999999999999998776      5788999999999986555444 66667              


Q ss_pred             ccCccccccEEEeC-CCCceEEe----ccC-----CCCEEEEEEcCC-CeEEEEECCCcEEEEeCC
Q 006825          542 SLDHMVVPETVFAL-SDKPICSF----QGH-----LDDVLDLSWSKS-QHLLSSSMDKTVRLWHLS  596 (630)
Q Consensus       542 s~d~~i~~~~Vwdl-sgk~l~tL----~GH-----s~~V~sLafSPd-~~LaSgS~DgtVrIWDl~  596 (630)
                               +||++ ++.++.+|    .|.     .-...+++|+++ +.|..|-.|+.|++|.+.
T Consensus       257 ---------kIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~  313 (315)
T KOG0279|consen  257 ---------KIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVA  313 (315)
T ss_pred             ---------EEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence                     55555 33333332    122     334578999999 999999999999999875

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=99.97  E-value=4e-29  Score=249.18  Aligned_cols=259  Identities=18%  Similarity=0.112  Sum_probs=211.2

Q ss_pred             ecceeeecCccceeEEEeec----ceEeecCCCccEecccCCC---CceeEEecCCccCCEEEEEEcCCCCeEEeecCCC
Q 006825          330 EEFEMCVGHSPIVQELMRRQ----NVEEGNKDSFDLNNNGSSG---GGMKSKKKGSWFKSIRTVASSVTGHKERRSSDER  402 (630)
Q Consensus       330 eef~~l~GHs~~V~~Lafs~----~laSgS~D~tvr~vWD~~t---G~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~  402 (630)
                      .+++.+.||.+.|+.+|+.|    .|||++.|++|| +|+...   -.++..+..+|++.|++|||+|.|++|+++|.|.
T Consensus         5 ~~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vr-iw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~   83 (312)
T KOG0645|consen    5 ILEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVR-IWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDA   83 (312)
T ss_pred             eeEEeecCCCCcEEEEEeccCCceEEEeecCCceEE-EEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccc
Confidence            45688999999999999999    399999999999 999874   4567777789999999999999999999999997


Q ss_pred             C-------------CccccCCcceEEEeecCCCe--EEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccC
Q 006825          403 D-------------TSSEKGGRRSSSATDDSQDV--SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLD  467 (630)
Q Consensus       403 d-------------t~s~~gh~~~Vsa~~~s~d~--l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpD  467 (630)
                      .             ...+.||.+.|.+++++.++  |++++.|..|++|.....  ..+.+...|++|+.-|.-+.|+|.
T Consensus        84 t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~ded--dEfec~aVL~~HtqDVK~V~WHPt  161 (312)
T KOG0645|consen   84 TVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDED--DEFECIAVLQEHTQDVKHVIWHPT  161 (312)
T ss_pred             eEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCC--CcEEEEeeeccccccccEEEEcCC
Confidence            1             23388999999999999999  999999999999998743  345688999999999999999999


Q ss_pred             CCEEEEEeCCCcEEEEECcC---CceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeeccccc------ccc
Q 006825          468 GRYLASAGEDCVIHVWQVVE---SERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRS------INR  538 (630)
Q Consensus       468 G~~LASgS~DgtIrVWDl~t---g~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~------~~~  538 (630)
                      ..+|+|+|+|.+||+|.-..   -.+..+     +.+|...|.+++|++.|..+++++.|+++++|.....      ...
T Consensus       162 ~dlL~S~SYDnTIk~~~~~~dddW~c~~t-----l~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~~~~~sr~~  236 (312)
T KOG0645|consen  162 EDLLFSCSYDNTIKVYRDEDDDDWECVQT-----LDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDLSGMHSRAL  236 (312)
T ss_pred             cceeEEeccCCeEEEEeecCCCCeeEEEE-----ecCccceEEEEEecCCCceEEEecCCcceEeeeeccCcchhcccce
Confidence            99999999999999998763   235555     4899999999999999999999999999999983221      111


Q ss_pred             cccccC-cccc------ccEEEeCCCC---c----eE-EeccCCCCEEEEEEcCC--CeEEEEECCCcEEEEeCC
Q 006825          539 KSLSLD-HMVV------PETVFALSDK---P----IC-SFQGHLDDVLDLSWSKS--QHLLSSSMDKTVRLWHLS  596 (630)
Q Consensus       539 ~s~s~d-~~i~------~~~Vwdlsgk---~----l~-tL~GHs~~V~sLafSPd--~~LaSgS~DgtVrIWDl~  596 (630)
                      ..+... +.+.      ..++|.....   +    +. .-..|...|++|+|.|.  ++|++|+.||+|++|.+.
T Consensus       237 Y~v~W~~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~  311 (312)
T KOG0645|consen  237 YDVPWDNGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE  311 (312)
T ss_pred             EeeeecccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence            212222 1111      1155554321   1    11 22469999999999995  999999999999999874

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.97  E-value=3.2e-29  Score=275.55  Aligned_cols=320  Identities=18%  Similarity=0.216  Sum_probs=260.2

Q ss_pred             eeecCCCCcccCCCccccccCCCCCcccccccEEEEECCCCcEE---------------------EEeeecCCCceeEEE
Q 006825          261 MSINGNGNYIGNSGEVVEDFDGNGTAGVAEQGCLIKNLDNGKEF---------------------VVNEIQEDGTWKKVK  319 (630)
Q Consensus       261 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~LddG~~~---------------------~v~e~~~dg~~~~l~  319 (630)
                      +.++||.++|..+              ......+||.|+.|+..                     ++..++.||. .++|
T Consensus        68 ~~l~~d~~~L~~a--------------~rs~llrv~~L~tgk~irswKa~He~Pvi~ma~~~~g~LlAtggaD~~-v~VW  132 (775)
T KOG0319|consen   68 LALTPDEEVLVTA--------------SRSQLLRVWSLPTGKLIRSWKAIHEAPVITMAFDPTGTLLATGGADGR-VKVW  132 (775)
T ss_pred             eeecCCccEEEEe--------------eccceEEEEEcccchHhHhHhhccCCCeEEEEEcCCCceEEeccccce-EEEE
Confidence            7899999999444              45667899999887421                     1233445554 6799


Q ss_pred             EcCCCceEeeecceeeecCccceeEEEeec-----ceEeecCCCccEecccCCCCc-eeEEecCCccCCEEEEEEcCCCC
Q 006825          320 EVGTGRQLTIEEFEMCVGHSPIVQELMRRQ-----NVEEGNKDSFDLNNNGSSGGG-MKSKKKGSWFKSIRTVASSVTGH  393 (630)
Q Consensus       320 dv~TG~~lt~eef~~l~GHs~~V~~Lafs~-----~laSgS~D~tvr~vWD~~tG~-~~~~lk~gH~~~V~sVAfSpdG~  393 (630)
                      |..-+-++     +.|.||.+.|..+.|.|     .|++|..|++++ +||..++. ++++++ .|...|++++|++|+.
T Consensus       133 di~~~~~t-----h~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~-vwnl~~~~tcl~~~~-~H~S~vtsL~~~~d~~  205 (775)
T KOG0319|consen  133 DIKNGYCT-----HSFKGHGGVVSSLLFHPHWNRWLLASGATDGTVR-VWNLNDKRTCLHTMI-LHKSAVTSLAFSEDSL  205 (775)
T ss_pred             EeeCCEEE-----EEecCCCceEEEEEeCCccchhheeecCCCceEE-EEEcccCchHHHHHH-hhhhheeeeeeccCCc
Confidence            99999999     99999999999999999     589999999999 99998665 488888 9999999999999998


Q ss_pred             eEEeecCCC-----------------------------C-----------------------------------------
Q 006825          394 KERRSSDER-----------------------------D-----------------------------------------  403 (630)
Q Consensus       394 ~lasgS~D~-----------------------------d-----------------------------------------  403 (630)
                      -+.+++.|+                             +                                         
T Consensus       206 ~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~  285 (775)
T KOG0319|consen  206 ELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEID  285 (775)
T ss_pred             eEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhh
Confidence            888766665                             0                                         


Q ss_pred             ---------------------------------------------------------Cc---------------cccCCc
Q 006825          404 ---------------------------------------------------------TS---------------SEKGGR  411 (630)
Q Consensus       404 ---------------------------------------------------------t~---------------s~~gh~  411 (630)
                                                                               +.               ...||.
T Consensus       286 ~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~  365 (775)
T KOG0319|consen  286 HLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHT  365 (775)
T ss_pred             cceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCch
Confidence                                                                     00               046777


Q ss_pred             ceEEEeecC--CCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCC-CEEEEEeCCCcEEEEECcCC
Q 006825          412 RSSSATDDS--QDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDG-RYLASAGEDCVIHVWQVVES  488 (630)
Q Consensus       412 ~~Vsa~~~s--~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG-~~LASgS~DgtIrVWDl~tg  488 (630)
                      -.|.+++..  .+.+++++.|.+|++|.+..+ .....+++...||+..|.+|+++..+ .+|+|+|.|++||+|++...
T Consensus       366 e~vlSL~~~~~g~llat~sKD~svilWr~~~~-~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s  444 (775)
T KOG0319|consen  366 EAVLSLDVWSSGDLLATGSKDKSVILWRLNNN-CSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKS  444 (775)
T ss_pred             hheeeeeecccCcEEEEecCCceEEEEEecCC-cchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCc
Confidence            778877733  334899999999999987332 23334677889999999999998754 59999999999999999763


Q ss_pred             ceeeeee----cccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeC-CCCceEEe
Q 006825          489 ERKGELL----EKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSF  563 (630)
Q Consensus       489 ~~~~~l~----~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL  563 (630)
                      +.....+    ......|...|.+++++|+.++|++|+.|++.                       ++|++ ....+.+|
T Consensus       445 ~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDkta-----------------------KiW~le~~~l~~vL  501 (775)
T KOG0319|consen  445 KETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTA-----------------------KIWDLEQLRLLGVL  501 (775)
T ss_pred             ccccccceehhhHHHHhhcccccceEecCCCceEEecccccce-----------------------eeecccCceEEEEe
Confidence            2221111    12346789999999999999999999999999                       78887 67889999


Q ss_pred             ccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCCCcEEEEEe-cCCceEEEE-cCCCcEEEEecc
Q 006825          564 QGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYDISLV-DRLMLRFAYGAF  626 (630)
Q Consensus       564 ~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg~~l~t~~-H~~~V~sVa-s~~~~~lAsgs~  626 (630)
                      .||+..|.+|.|+|. +.|+|+|.|+|||||.+.+..|+++|. |...|.-+. -.++..|.+++.
T Consensus       502 sGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~a  567 (775)
T KOG0319|consen  502 SGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGA  567 (775)
T ss_pred             eCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccC
Confidence            999999999999998 999999999999999999999999999 999998888 556666666543

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=99.97  E-value=8.8e-28  Score=256.24  Aligned_cols=339  Identities=18%  Similarity=0.160  Sum_probs=247.9

Q ss_pred             eecCCCCcccCCCccccccCCCCCcccccccEEEEECCC------------------------CcEEEEeeecCCCceeE
Q 006825          262 SINGNGNYIGNSGEVVEDFDGNGTAGVAEQGCLIKNLDN------------------------GKEFVVNEIQEDGTWKK  317 (630)
Q Consensus       262 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~Ldd------------------------G~~~~v~e~~~dg~~~~  317 (630)
                      .+||+|-||              |+++.-+.+|||+.-.                        ++++++..+|.+- ..+
T Consensus        66 kySPsG~yi--------------ASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrer-fg~  130 (603)
T KOG0318|consen   66 KYSPSGFYI--------------ASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRER-FGH  130 (603)
T ss_pred             EeCCCceEE--------------eecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccc-eeE
Confidence            899999999              7788888999988643                        3333332222221 222


Q ss_pred             EEEcCCCceEeeecceeeecCccceeEEEeec----ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCC
Q 006825          318 VKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQ----NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGH  393 (630)
Q Consensus       318 l~dv~TG~~lt~eef~~l~GHs~~V~~Lafs~----~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~  393 (630)
                      +.--.||..+     ..+.||+..|.++.|.|    .++|||.|+++- ++.--.-+-..+++ .|.+-|++|-|+|||.
T Consensus       131 ~F~~DSG~Sv-----Gei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~-ffeGPPFKFk~s~r-~HskFV~~VRysPDG~  203 (603)
T KOG0318|consen  131 VFLWDSGNSV-----GEITGHSRRINSVDFKPSRPFRIATGSDDNTVA-FFEGPPFKFKSSFR-EHSKFVNCVRYSPDGS  203 (603)
T ss_pred             EEEecCCCcc-----ceeeccceeEeeeeccCCCceEEEeccCCCeEE-EeeCCCeeeeeccc-ccccceeeEEECCCCC
Confidence            2222244444     67899999999999988    799999999999 88776666677777 8999999999999999


Q ss_pred             eEEeecCCC--------------CCccccCCcceEEEeecCCCe--EEEecCCcEEEEEeCCCCcccc------------
Q 006825          394 KERRSSDER--------------DTSSEKGGRRSSSATDDSQDV--SFHGQERVRVRQYGKSCKDLTA------------  445 (630)
Q Consensus       394 ~lasgS~D~--------------dt~s~~gh~~~Vsa~~~s~d~--l~Sgs~Dg~VriWd~~~~el~~------------  445 (630)
                      ++++.+.|+              +.....+|+..|.++.++||.  +++.+.|.++++||+.+..+..            
T Consensus       204 ~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqq  283 (603)
T KOG0318|consen  204 RFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQ  283 (603)
T ss_pred             eEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceE
Confidence            999988877              122266899999999999998  9999999999999998654321            


Q ss_pred             --------------------------eeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeecccc
Q 006825          446 --------------------------LYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQE  499 (630)
Q Consensus       446 --------------------------~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~  499 (630)
                                                ...+++++||...|+++..+||+++|+||+.||.|.-|+..++..-+..    -
T Consensus       284 vG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~----g  359 (603)
T KOG0318|consen  284 VGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLA----G  359 (603)
T ss_pred             EEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccc----c
Confidence                                      1123677899999999999999999999999999999999887654432    2


Q ss_pred             cCcccceEEEEECCCCCEEEEeeCCCeeeeecccc-----c---------c-----------------------------
Q 006825          500 DGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGR-----S---------I-----------------------------  536 (630)
Q Consensus       500 ~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~-----~---------~-----------------------------  536 (630)
                      .+|...|..++.+..+.++ +.+.|.++++.....     .         .                             
T Consensus       360 ~~h~nqI~~~~~~~~~~~~-t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~  438 (603)
T KOG0318|consen  360 KGHTNQIKGMAASESGELF-TIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVS  438 (603)
T ss_pred             ccccceEEEEeecCCCcEE-EEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcce
Confidence            5566666666655444433 333444444332100     0         0                             


Q ss_pred             --------cccccccCcccc-------ccEEEeCCCC---ceEEeccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCC
Q 006825          537 --------NRKSLSLDHMVV-------PETVFALSDK---PICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSS  597 (630)
Q Consensus       537 --------~~~s~s~d~~i~-------~~~Vwdlsgk---~l~tL~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~t  597 (630)
                              ....++++...+       .-+++.+.|.   ....+..|..+|++++|||| .|||+|-..+.|-+||+.+
T Consensus       439 ~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s  518 (603)
T KOG0318|consen  439 SIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVAS  518 (603)
T ss_pred             eeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEccc
Confidence                    000011111100       0156777552   33346779999999999999 9999999999999999999


Q ss_pred             CcEEEE-Ee-cCCceEEEE-cCCCcEEEEecce
Q 006825          598 KTCLKI-FS-HSDYDISLV-DRLMLRFAYGAFL  627 (630)
Q Consensus       598 g~~l~t-~~-H~~~V~sVa-s~~~~~lAsgs~~  627 (630)
                      .+.... .. |+..|.||+ +|+...+|+|+.+
T Consensus       519 ~~~~~~~w~FHtakI~~~aWsP~n~~vATGSlD  551 (603)
T KOG0318|consen  519 REVKTNRWAFHTAKINCVAWSPNNKLVATGSLD  551 (603)
T ss_pred             CceecceeeeeeeeEEEEEeCCCceEEEecccc
Confidence            887322 23 999999999 9999999999865

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=99.97  E-value=1.1e-28  Score=248.10  Aligned_cols=235  Identities=16%  Similarity=0.190  Sum_probs=205.7

Q ss_pred             eecCCCCcccCCCccccccCCCCCcccccccEEEEECCCCcEEEEeeecCCCceeEEEEcCCCceEeeecceeeecCccc
Q 006825          262 SINGNGNYIGNSGEVVEDFDGNGTAGVAEQGCLIKNLDNGKEFVVNEIQEDGTWKKVKEVGTGRQLTIEEFEMCVGHSPI  341 (630)
Q Consensus       262 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~LddG~~~~v~e~~~dg~~~~l~dv~TG~~lt~eef~~l~GHs~~  341 (630)
                      +++|.|+++              |.+-.|+.|.|++|..-+        .+|...+.              ..|.||+..
T Consensus       104 A~sPSg~~V--------------AcGGLdN~Csiy~ls~~d--------~~g~~~v~--------------r~l~gHtgy  147 (343)
T KOG0286|consen  104 AYSPSGNFV--------------ACGGLDNKCSIYPLSTRD--------AEGNVRVS--------------RELAGHTGY  147 (343)
T ss_pred             EECCCCCeE--------------EecCcCceeEEEeccccc--------ccccceee--------------eeecCccce
Confidence            999999999              788899999999995321        12221111              456899999


Q ss_pred             eeEEEeec--ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcC-CCCeEEeecCCCCCccccCCcceEEEee
Q 006825          342 VQELMRRQ--NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSV-TGHKERRSSDERDTSSEKGGRRSSSATD  418 (630)
Q Consensus       342 V~~Lafs~--~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSp-dG~~lasgS~D~dt~s~~gh~~~Vsa~~  418 (630)
                      +.+..|-+  .|++||.|.|+. +||+++|+....+. ||.+-|.+++++| +++.+                       
T Consensus       148 lScC~f~dD~~ilT~SGD~TCa-lWDie~g~~~~~f~-GH~gDV~slsl~p~~~ntF-----------------------  202 (343)
T KOG0286|consen  148 LSCCRFLDDNHILTGSGDMTCA-LWDIETGQQTQVFH-GHTGDVMSLSLSPSDGNTF-----------------------  202 (343)
T ss_pred             eEEEEEcCCCceEecCCCceEE-EEEcccceEEEEec-CCcccEEEEecCCCCCCeE-----------------------
Confidence            99999988  899999999999 99999999999999 9999999999999 77666                       


Q ss_pred             cCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeeccc
Q 006825          419 DSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQ  498 (630)
Q Consensus       419 ~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~  498 (630)
                            ++|+-|.+.++||++.+     .++|+|.||..-|++|+|.|+|.-++||++|+++|+||++..+.+..+-   
T Consensus       203 ------vSg~cD~~aklWD~R~~-----~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys---  268 (343)
T KOG0286|consen  203 ------VSGGCDKSAKLWDVRSG-----QCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYS---  268 (343)
T ss_pred             ------EecccccceeeeeccCc-----ceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeec---
Confidence                  45666778999999766     4899999999999999999999999999999999999999888776642   


Q ss_pred             ccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeC-CCCceEEeccCCCCEEEEEEcC
Q 006825          499 EDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSWSK  577 (630)
Q Consensus       499 ~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL~GHs~~V~sLafSP  577 (630)
                      ......+|.+++|+..|++|.+|..|.++                       .+|+. .++.+..|.||.+.|.+|..+|
T Consensus       269 ~~~~~~gitSv~FS~SGRlLfagy~d~~c-----------------------~vWDtlk~e~vg~L~GHeNRvScl~~s~  325 (343)
T KOG0286|consen  269 HDSIICGITSVAFSKSGRLLFAGYDDFTC-----------------------NVWDTLKGERVGVLAGHENRVSCLGVSP  325 (343)
T ss_pred             cCcccCCceeEEEcccccEEEeeecCCce-----------------------eEeeccccceEEEeeccCCeeEEEEECC
Confidence            24445789999999999999999999999                       78887 8899999999999999999999


Q ss_pred             C-CeEEEEECCCcEEEEe
Q 006825          578 S-QHLLSSSMDKTVRLWH  594 (630)
Q Consensus       578 d-~~LaSgS~DgtVrIWD  594 (630)
                      | .-|+|||+|.++|||.
T Consensus       326 DG~av~TgSWDs~lriW~  343 (343)
T KOG0286|consen  326 DGMAVATGSWDSTLRIWA  343 (343)
T ss_pred             CCcEEEecchhHheeecC
Confidence            9 8899999999999994

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.97  E-value=2.2e-29  Score=274.72  Aligned_cols=310  Identities=15%  Similarity=0.160  Sum_probs=236.4

Q ss_pred             ccccCCcceeeecCCCCCCcccCCCC----CC---CCCCcccccc---ccccceeeeccCCCCCCCCCCCcccccccCCC
Q 006825          175 LSVCSPSILSIHCSSLDSPRVNNGNS----ND---NDSSNVSYNV---DQNQSVLVRKSPSGNSNNGSSPVASAALSNKP  244 (630)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~---~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (630)
                      ..+|+|+..|+||++|+|||+|+..+    .-   ||++-.+.++   |.+|+.|.+.+.+..-+.+...       -.|
T Consensus       386 ~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~-------~d~  458 (1080)
T KOG1408|consen  386 TAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVST-------CDS  458 (1080)
T ss_pred             ccccCCccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhh-------cCc
Confidence            45799999999999999999999887    22   9999999998   9999999888877433322211       111


Q ss_pred             CCCCCCccccccCCCceeecCCCCcccCCCccccccCCCCCcccccccEEEEECCCCcEEEEeeecCCCceeEEEEcCCC
Q 006825          245 PTGRNCKRMDESRGDSMSINGNGNYIGNSGEVVEDFDGNGTAGVAEQGCLIKNLDNGKEFVVNEIQEDGTWKKVKEVGTG  324 (630)
Q Consensus       245 ~~~~~~~~~d~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~LddG~~~~v~e~~~dg~~~~l~dv~TG  324 (630)
                      -.|-.|          +++|||||||              |+++..++++|++|..-++....                 
T Consensus       459 r~G~R~----------~~vSp~gqhL--------------AsGDr~GnlrVy~Lq~l~~~~~~-----------------  497 (1080)
T KOG1408|consen  459 RFGFRA----------LAVSPDGQHL--------------ASGDRGGNLRVYDLQELEYTCFM-----------------  497 (1080)
T ss_pred             ccceEE----------EEECCCccee--------------cccCccCceEEEEehhhhhhhhe-----------------
Confidence            122222          8999999999              88899999999999665444333                 


Q ss_pred             ceEeeecceeeecCccceeEEEeec------ceEeecCCCccEecccCCC-CceeEEecCCccCCEEEEEEcCCCCeEEe
Q 006825          325 RQLTIEEFEMCVGHSPIVQELMRRQ------NVEEGNKDSFDLNNNGSSG-GGMKSKKKGSWFKSIRTVASSVTGHKERR  397 (630)
Q Consensus       325 ~~lt~eef~~l~GHs~~V~~Lafs~------~laSgS~D~tvr~vWD~~t-G~~~~~lk~gH~~~V~sVAfSpdG~~las  397 (630)
                                 ..|..-|.+|.|+.      .||++|.|+.|. |+|+.. ...++++- +|...|++|.|.-.|-    
T Consensus       498 -----------eAHesEilcLeyS~p~~~~kLLASasrdRlIH-V~Dv~rny~l~qtld-~HSssITsvKFa~~gl----  560 (1080)
T KOG1408|consen  498 -----------EAHESEILCLEYSFPVLTNKLLASASRDRLIH-VYDVKRNYDLVQTLD-GHSSSITSVKFACNGL----  560 (1080)
T ss_pred             -----------ecccceeEEEeecCchhhhHhhhhccCCceEE-EEecccccchhhhhc-ccccceeEEEEeecCC----
Confidence                       34556667777765      699999999999 999865 55777887 9999999999988661    


Q ss_pred             ecCCCCCccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCC
Q 006825          398 SSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGED  477 (630)
Q Consensus       398 gS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~D  477 (630)
                                  ...+++|.++....+-+.-..+..+++-           ..+-.--+..++.|+..|..++++++++|
T Consensus       561 ------------n~~MiscGADksimFr~~qk~~~g~~f~-----------r~t~t~~ktTlYDm~Vdp~~k~v~t~cQD  617 (1080)
T KOG1408|consen  561 ------------NRKMISCGADKSIMFRVNQKASSGRLFP-----------RHTQTLSKTTLYDMAVDPTSKLVVTVCQD  617 (1080)
T ss_pred             ------------ceEEEeccCchhhheehhccccCceecc-----------ccccccccceEEEeeeCCCcceEEEEecc
Confidence                        1122222222221111111111112211           11111123578999999999999999999


Q ss_pred             CcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeC-C
Q 006825          478 CVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-S  556 (630)
Q Consensus       478 gtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-s  556 (630)
                      +.|+||++..++..+.+  +...+|.+....+...|.|.|+++...|+++                       .++|. +
T Consensus       618 rnirif~i~sgKq~k~F--Kgs~~~eG~lIKv~lDPSgiY~atScsdktl-----------------------~~~Df~s  672 (1080)
T KOG1408|consen  618 RNIRIFDIESGKQVKSF--KGSRDHEGDLIKVILDPSGIYLATSCSDKTL-----------------------CFVDFVS  672 (1080)
T ss_pred             cceEEEeccccceeeee--cccccCCCceEEEEECCCccEEEEeecCCce-----------------------EEEEecc
Confidence            99999999999988876  3346788888899999999999999999999                       88888 9


Q ss_pred             CCceEEeccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCC
Q 006825          557 DKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSS  597 (630)
Q Consensus       557 gk~l~tL~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~t  597 (630)
                      |+++.++.||...|+.+.|.+| +.|++.+.||.|.||.+..
T Consensus       673 gEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~  714 (1080)
T KOG1408|consen  673 GECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLPL  714 (1080)
T ss_pred             chhhhhhcCcchheeeeeecccchhheeecCCceEEEEECch
Confidence            9999999999999999999999 9999999999999999864

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.96  E-value=2.8e-28  Score=270.41  Aligned_cols=229  Identities=24%  Similarity=0.248  Sum_probs=200.0

Q ss_pred             eeeecCccceeEEEeec---ceEeecCCCccEecccC-CCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCcccc
Q 006825          333 EMCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGS-SGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEK  408 (630)
Q Consensus       333 ~~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~-~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~  408 (630)
                      ..+.||...|..++|+|   .+++++.|+++| +||+ ..+..+++++ ||...|.+++|+|+|+++             
T Consensus       197 ~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tir-iwd~~~~~~~~~~l~-gH~~~v~~~~f~p~g~~i-------------  261 (456)
T KOG0266|consen  197 RELSGHTRGVSDVAFSPDGSYLLSGSDDKTLR-IWDLKDDGRNLKTLK-GHSTYVTSVAFSPDGNLL-------------  261 (456)
T ss_pred             ccccccccceeeeEECCCCcEEEEecCCceEE-EeeccCCCeEEEEec-CCCCceEEEEecCCCCEE-------------
Confidence            55589999999999999   899999999999 9999 6679999999 999999999999998766             


Q ss_pred             CCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCC
Q 006825          409 GGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVES  488 (630)
Q Consensus       409 gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg  488 (630)
                                      ++|+.|++||+||+.+++     ++..|.+|.+.|.+++|+++|++|++++.|++|+|||+.++
T Consensus       262 ----------------~Sgs~D~tvriWd~~~~~-----~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~  320 (456)
T KOG0266|consen  262 ----------------VSGSDDGTVRIWDVRTGE-----CVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETG  320 (456)
T ss_pred             ----------------EEecCCCcEEEEeccCCe-----EEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCC
Confidence                            556677799999998854     68899999999999999999999999999999999999999


Q ss_pred             c--eeeeeecccccCccc--ceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeC-CCCceEEe
Q 006825          489 E--RKGELLEKQEDGHLN--MLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSF  563 (630)
Q Consensus       489 ~--~~~~l~~~~~~gh~~--~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL  563 (630)
                      .  +..++     .++..  .+..+.|+|++.+++++..|+.+                       ++|++ .+..+..+
T Consensus       321 ~~~~~~~~-----~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~-----------------------~~w~l~~~~~~~~~  372 (456)
T KOG0266|consen  321 SKLCLKLL-----SGAENSAPVTSVQFSPNGKYLLSASLDRTL-----------------------KLWDLRSGKSVGTY  372 (456)
T ss_pred             ceeeeecc-----cCCCCCCceeEEEECCCCcEEEEecCCCeE-----------------------EEEEccCCcceeee
Confidence            8  44553     44433  59999999999999999999999                       88888 58899999


Q ss_pred             ccCCCCEEE---EEEcCC-CeEEEEECCCcEEEEeCCCCcEEEEEe-c-CCceEEEE-cCCCcEEEEec
Q 006825          564 QGHLDDVLD---LSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-H-SDYDISLV-DRLMLRFAYGA  625 (630)
Q Consensus       564 ~GHs~~V~s---LafSPd-~~LaSgS~DgtVrIWDl~tg~~l~t~~-H-~~~V~sVa-s~~~~~lAsgs  625 (630)
                      .+|...+++   ..+++. .++++|+.|+.|++||+.++..+..+. | ...|..+. ++....+++.+
T Consensus       373 ~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s  441 (456)
T KOG0266|consen  373 TGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASSS  441 (456)
T ss_pred             cccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccCCCcCeeeecC
Confidence            999986433   334556 899999999999999999999888888 8 78888888 88888888776

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=99.96  E-value=8e-27  Score=248.96  Aligned_cols=323  Identities=15%  Similarity=0.187  Sum_probs=262.6

Q ss_pred             CCcccccccEEEEECCCCcEEEEeeecCCCceeEEEEcCCCceEeeecceeeecCccceeEEEeec---ceEeecCCCcc
Q 006825          284 GTAGVAEQGCLIKNLDNGKEFVVNEIQEDGTWKKVKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQ---NVEEGNKDSFD  360 (630)
Q Consensus       284 ~~~~~~~~~~~I~~LddG~~~~v~e~~~dg~~~~l~dv~TG~~lt~eef~~l~GHs~~V~~Lafs~---~laSgS~D~tv  360 (630)
                      .-+.++...+.|..-..|..++.-    .|....++++......     ..+.+|+-.|+-.-|+|   ++|||-.-++|
T Consensus        13 lPst~Rg~~~~ig~dpkgd~ilY~----nGksv~ir~i~~~~~~-----~iYtEH~~~vtVAkySPsG~yiASGD~sG~v   83 (603)
T KOG0318|consen   13 LPSTERGVPIIIGGDPKGDNILYT----NGKSVIIRNIDNPASV-----DIYTEHAHQVTVAKYSPSGFYIASGDVSGKV   83 (603)
T ss_pred             CCcccCCcceEeccCCCCCeEEEe----CCCEEEEEECCCccce-----eeeccccceeEEEEeCCCceEEeecCCcCcE
Confidence            345567777888777777766654    4566778888876666     78889999999999999   89999999999


Q ss_pred             EecccCCCCc--eeEEecCCccCCEEEEEEcCCCCeEEeecCCC---------CC----ccccCCcceEEEeecCCCe--
Q 006825          361 LNNNGSSGGG--MKSKKKGSWFKSIRTVASSVTGHKERRSSDER---------DT----SSEKGGRRSSSATDDSQDV--  423 (630)
Q Consensus       361 r~vWD~~tG~--~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~---------dt----~s~~gh~~~Vsa~~~s~d~--  423 (630)
                      | |||...-+  .+.+++ -..++|+.++|++|+++|+..++.+         |+    +...||.+.|.+.+|.+..  
T Consensus        84 R-IWdtt~~~hiLKnef~-v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~DSG~SvGei~GhSr~ins~~~KpsRPf  161 (603)
T KOG0318|consen   84 R-IWDTTQKEHILKNEFQ-VLAGPIKDISWDFDSKRIAAVGEGRERFGHVFLWDSGNSVGEITGHSRRINSVDFKPSRPF  161 (603)
T ss_pred             E-EEeccCcceeeeeeee-ecccccccceeCCCCcEEEEEecCccceeEEEEecCCCccceeeccceeEeeeeccCCCce
Confidence            9 99986533  334555 6788999999999999999988776         33    3489999999999999876  


Q ss_pred             -EEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccCc
Q 006825          424 -SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGH  502 (630)
Q Consensus       424 -l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh  502 (630)
                       +++|++|.+|-+|.-     ..+....++..|..-|+|+.|+|||.++||+|.||+|.|||-.+++.+.+|-.  ..+|
T Consensus       162 Ri~T~sdDn~v~ffeG-----PPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~--~~aH  234 (603)
T KOG0318|consen  162 RIATGSDDNTVAFFEG-----PPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELED--SDAH  234 (603)
T ss_pred             EEEeccCCCeEEEeeC-----CCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecC--CCCc
Confidence             999999999999954     23344578889999999999999999999999999999999999999988632  4699


Q ss_pred             ccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCcccc---ccEE-----------------EeC-CCCceE
Q 006825          503 LNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVV---PETV-----------------FAL-SDKPIC  561 (630)
Q Consensus       503 ~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~---~~~V-----------------wdl-sgk~l~  561 (630)
                      .+.|++++|+||++.+++++.|.++++|+........++.....+.   -..+                 ++. ...+++
T Consensus       235 kGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~  314 (603)
T KOG0318|consen  235 KGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLK  314 (603)
T ss_pred             cccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhh
Confidence            9999999999999999999999999999987654444443333211   1122                 333 346788


Q ss_pred             EeccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCCCcEEEEEe--cCCceEEEE-cCCCcEEEEe
Q 006825          562 SFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS--HSDYDISLV-DRLMLRFAYG  624 (630)
Q Consensus       562 tL~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg~~l~t~~--H~~~V~sVa-s~~~~~lAsg  624 (630)
                      ++.||...|++|+.+|+ .+|+||+.||.|.-|+..+|.+-+.+.  |...|.+++ ...+.++..+
T Consensus       315 ~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g  381 (603)
T KOG0318|consen  315 VISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIG  381 (603)
T ss_pred             eecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEe
Confidence            89999999999999999 999999999999999999999887764  999999999 4434444444

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=99.96  E-value=5e-28  Score=248.37  Aligned_cols=259  Identities=14%  Similarity=0.146  Sum_probs=228.2

Q ss_pred             eeeecCccceeEEEeec---ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCC-----CC
Q 006825          333 EMCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDER-----DT  404 (630)
Q Consensus       333 ~~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~-----dt  404 (630)
                      ..+.||.+.|++|++-|   .+++||.|+|++ |||++||+.+.++. ||...|+.||+|+.-.|+-+++.|+     |.
T Consensus       145 rVi~gHlgWVr~vavdP~n~wf~tgs~Drtik-IwDlatg~Lkltlt-Ghi~~vr~vavS~rHpYlFs~gedk~VKCwDL  222 (460)
T KOG0285|consen  145 RVISGHLGWVRSVAVDPGNEWFATGSADRTIK-IWDLATGQLKLTLT-GHIETVRGVAVSKRHPYLFSAGEDKQVKCWDL  222 (460)
T ss_pred             hhhhhccceEEEEeeCCCceeEEecCCCceeE-EEEcccCeEEEeec-chhheeeeeeecccCceEEEecCCCeeEEEec
Confidence            56789999999999999   799999999999 99999999999999 9999999999999999999999998     22


Q ss_pred             c------cccCCcceEEEeecCCCe--EEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeC
Q 006825          405 S------SEKGGRRSSSATDDSQDV--SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGE  476 (630)
Q Consensus       405 ~------s~~gh~~~Vsa~~~s~d~--l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~  476 (630)
                      .      .--||-..|.|++..+..  +++|+.|.++|+||+.++.     .+.+|.||+.+|..|.+.|-...++|||.
T Consensus       223 e~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~-----~V~~l~GH~~~V~~V~~~~~dpqvit~S~  297 (460)
T KOG0285|consen  223 EYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRA-----SVHVLSGHTNPVASVMCQPTDPQVITGSH  297 (460)
T ss_pred             hhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccc-----eEEEecCCCCcceeEEeecCCCceEEecC
Confidence            2      267899999999999654  9999999999999999885     57899999999999999997777999999


Q ss_pred             CCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeC-
Q 006825          477 DCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-  555 (630)
Q Consensus       477 DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-  555 (630)
                      |++||+||+..|+....+     ..|...|.+++.+|....+++++.|..                        +-|++ 
T Consensus       298 D~tvrlWDl~agkt~~tl-----t~hkksvral~lhP~e~~fASas~dni------------------------k~w~~p  348 (460)
T KOG0285|consen  298 DSTVRLWDLRAGKTMITL-----THHKKSVRALCLHPKENLFASASPDNI------------------------KQWKLP  348 (460)
T ss_pred             CceEEEeeeccCceeEee-----ecccceeeEEecCCchhhhhccCCccc------------------------eeccCC
Confidence            999999999999988875     789999999999999999999987764                        56777 


Q ss_pred             CCCceEEeccCCCCEEEEEEcCCCeEEEEECCCcEEEEeCCCCcEEEEEe---------cCCceEEEE-cCCCcEEEEec
Q 006825          556 SDKPICSFQGHLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFS---------HSDYDISLV-DRLMLRFAYGA  625 (630)
Q Consensus       556 sgk~l~tL~GHs~~V~sLafSPd~~LaSgS~DgtVrIWDl~tg~~l~t~~---------H~~~V~sVa-s~~~~~lAsgs  625 (630)
                      .|..++.+.||..-|++|+...|+++++|+..|.|.+||.++|-..+.+.         ....|.+.+ +..+..|.++.
T Consensus       349 ~g~f~~nlsgh~~iintl~~nsD~v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~e  428 (460)
T KOG0285|consen  349 EGEFLQNLSGHNAIINTLSVNSDGVLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGE  428 (460)
T ss_pred             ccchhhccccccceeeeeeeccCceEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEecc
Confidence            78888889999999999999988999999999999999999986655442         234456666 77788888875


Q ss_pred             ce
Q 006825          626 FL  627 (630)
Q Consensus       626 ~~  627 (630)
                      .+
T Consensus       429 ad  430 (460)
T KOG0285|consen  429 AD  430 (460)
T ss_pred             CC
Confidence            44

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=99.96  E-value=2.2e-27  Score=250.61  Aligned_cols=256  Identities=18%  Similarity=0.253  Sum_probs=213.8

Q ss_pred             eeecCCCCcccCCCccccccCCCCCcccccccEEEEECCCCcEEEEeeecCCCceeEEEEcCCCceEeeecceeeecCcc
Q 006825          261 MSINGNGNYIGNSGEVVEDFDGNGTAGVAEQGCLIKNLDNGKEFVVNEIQEDGTWKKVKEVGTGRQLTIEEFEMCVGHSP  340 (630)
Q Consensus       261 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~LddG~~~~v~e~~~dg~~~~l~dv~TG~~lt~eef~~l~GHs~  340 (630)
                      +.-|.+|..|              +++.+++..|||+.+                        |.++     .+|.-|.+
T Consensus       241 L~Wn~~G~~L--------------atG~~~G~~riw~~~------------------------G~l~-----~tl~~Hkg  277 (524)
T KOG0273|consen  241 LDWNNDGTLL--------------ATGSEDGEARIWNKD------------------------GNLI-----STLGQHKG  277 (524)
T ss_pred             EEecCCCCeE--------------EEeecCcEEEEEecC------------------------chhh-----hhhhccCC
Confidence            6667777777              666677777777763                        3333     56777999


Q ss_pred             ceeEEEeec---ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEe
Q 006825          341 IVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSAT  417 (630)
Q Consensus       341 ~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~  417 (630)
                      +|.+|-++.   +|++++.|+|+. +||+.+|+..+.+. -|...-..|-|--                           
T Consensus       278 PI~slKWnk~G~yilS~~vD~tti-lwd~~~g~~~q~f~-~~s~~~lDVdW~~---------------------------  328 (524)
T KOG0273|consen  278 PIFSLKWNKKGTYILSGGVDGTTI-LWDAHTGTVKQQFE-FHSAPALDVDWQS---------------------------  328 (524)
T ss_pred             ceEEEEEcCCCCEEEeccCCccEE-EEeccCceEEEeee-eccCCccceEEec---------------------------
Confidence            999999987   899999999999 99999999999888 5555422233322                           


Q ss_pred             ecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeecc
Q 006825          418 DDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEK  497 (630)
Q Consensus       418 ~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~  497 (630)
                         .+-+++.+.|+.|+++.+..+.     ++.++.||++.|.+|.|+|.|.+|+|+|.|+|+|||......+...|   
T Consensus       329 ---~~~F~ts~td~~i~V~kv~~~~-----P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l---  397 (524)
T KOG0273|consen  329 ---NDEFATSSTDGCIHVCKVGEDR-----PVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDL---  397 (524)
T ss_pred             ---CceEeecCCCceEEEEEecCCC-----cceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhh---
Confidence               1236777889999999887664     47889999999999999999999999999999999999888777774   


Q ss_pred             cccCcccceEEEEECCCC---------CEEEEeeCCCeeeeecccccccccccccCccccccEEEeC-CCCceEEeccCC
Q 006825          498 QEDGHLNMLLLANGSPEP---------TSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHL  567 (630)
Q Consensus       498 ~~~gh~~~V~svafSpdg---------~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL~GHs  567 (630)
                        .+|...|+.+.|+|.|         ..+++++.|.+|                       ++|++ .+.++++|..|+
T Consensus       398 --~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV-----------------------~lwdv~~gv~i~~f~kH~  452 (524)
T KOG0273|consen  398 --QAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTV-----------------------KLWDVESGVPIHTLMKHQ  452 (524)
T ss_pred             --hhhccceeeEeecCCCCccCCCcCCceEEEeecCCeE-----------------------EEEEccCCceeEeeccCC
Confidence              8999999999999974         567788888888                       89998 899999999999


Q ss_pred             CCEEEEEEcCC-CeEEEEECCCcEEEEeCCCCcEEEEEecCCceEEEE-cCCCcEEEEe
Q 006825          568 DDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYDISLV-DRLMLRFAYG  624 (630)
Q Consensus       568 ~~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg~~l~t~~H~~~V~sVa-s~~~~~lAsg  624 (630)
                      .+|++|+|+|+ .|||+|+.||.|.||++++++.++.+..++.|..|. +..+..++..
T Consensus       453 ~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~~~~Ifel~Wn~~G~kl~~~  511 (524)
T KOG0273|consen  453 EPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQGTGGIFELCWNAAGDKLGAC  511 (524)
T ss_pred             CceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecCCCeEEEEEEcCCCCEEEEE
Confidence            99999999999 999999999999999999999999999888999999 5555555443

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=99.96  E-value=1.9e-27  Score=234.94  Aligned_cols=251  Identities=16%  Similarity=0.136  Sum_probs=214.0

Q ss_pred             ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCC----C--------CccccCCcceEEEe
Q 006825          350 NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDER----D--------TSSEKGGRRSSSAT  417 (630)
Q Consensus       350 ~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~----d--------t~s~~gh~~~Vsa~  417 (630)
                      +|||++.|-||| +|...||.|.+++. .-...|+.+...||+++||.+....    |        .....+|.+-|.++
T Consensus        12 iLvsA~YDhTIR-fWqa~tG~C~rTiq-h~dsqVNrLeiTpdk~~LAaa~~qhvRlyD~~S~np~Pv~t~e~h~kNVtaV   89 (311)
T KOG0315|consen   12 ILVSAGYDHTIR-FWQALTGICSRTIQ-HPDSQVNRLEITPDKKDLAAAGNQHVRLYDLNSNNPNPVATFEGHTKNVTAV   89 (311)
T ss_pred             EEEeccCcceee-eeehhcCeEEEEEe-cCccceeeEEEcCCcchhhhccCCeeEEEEccCCCCCceeEEeccCCceEEE
Confidence            699999999999 99999999999998 6778999999999999999988765    2        22378999999999


Q ss_pred             ecCCCe--EEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeee
Q 006825          418 DDSQDV--SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELL  495 (630)
Q Consensus       418 ~~s~d~--l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~  495 (630)
                      .|..++  +++|++||++||||++...      .+.+..|..+|++|..+|+-..|++|..+|.|+|||+.+..+..+++
T Consensus        90 gF~~dgrWMyTgseDgt~kIWdlR~~~------~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~li  163 (311)
T KOG0315|consen   90 GFQCDGRWMYTGSEDGTVKIWDLRSLS------CQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELI  163 (311)
T ss_pred             EEeecCeEEEecCCCceEEEEeccCcc------cchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccC
Confidence            999999  9999999999999997642      45556688999999999999999999999999999999887777763


Q ss_pred             cccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeCCCCceEEeccCCCCEEEEEE
Q 006825          496 EKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSW  575 (630)
Q Consensus       496 ~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL~GHs~~V~sLaf  575 (630)
                          ......|.++...|||+.++.+-..|+..+|+......                ...-+++..|+.|...|+.+.|
T Consensus       164 ----Pe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~----------------~s~l~P~~k~~ah~~~il~C~l  223 (311)
T KOG0315|consen  164 ----PEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQT----------------ASELEPVHKFQAHNGHILRCLL  223 (311)
T ss_pred             ----CCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCc----------------cccceEhhheecccceEEEEEE
Confidence                44557899999999999999999999984444322000                0012567789999999999999


Q ss_pred             cCC-CeEEEEECCCcEEEEeCCCC-cEEEEEe-cCCceEEEE-cCCCcEEEEeccee
Q 006825          576 SKS-QHLLSSSMDKTVRLWHLSSK-TCLKIFS-HSDYDISLV-DRLMLRFAYGAFLN  628 (630)
Q Consensus       576 SPd-~~LaSgS~DgtVrIWDl~tg-~~l~t~~-H~~~V~sVa-s~~~~~lAsgs~~n  628 (630)
                      ||+ ++||++|.|++|+||++++. +.-..+. |..+|+..+ +.++.+|.+++.++
T Consensus       224 SPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~  280 (311)
T KOG0315|consen  224 SPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDH  280 (311)
T ss_pred             CCCCcEEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEecCCCC
Confidence            999 99999999999999999987 5555566 999999999 99999999998764

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=7.6e-28  Score=247.76  Aligned_cols=251  Identities=20%  Similarity=0.175  Sum_probs=225.3

Q ss_pred             EEEeeecCCCceeEEEEcCCCceEeeecceeeecCccceeEEEeec---ceEeecCCCccEecccCCC-CceeEEecCCc
Q 006825          304 FVVNEIQEDGTWKKVKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSG-GGMKSKKKGSW  379 (630)
Q Consensus       304 ~~v~e~~~dg~~~~l~dv~TG~~lt~eef~~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~t-G~~~~~lk~gH  379 (630)
                      +++....+|++ .++||..||+.+     ..|.||+..|..++|..   +||+.|.|-.+. +||..+ .++++.+. ||
T Consensus       121 ~~v~~as~d~t-ikv~D~~tg~~e-----~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~-LWd~~~~~~c~ks~~-gh  192 (406)
T KOG0295|consen  121 ALVVSASEDAT-IKVFDTETGELE-----RSLRGHTDSVFDISFDASGKYLATCSSDLSAK-LWDFDTFFRCIKSLI-GH  192 (406)
T ss_pred             eEEEEecCCce-EEEEEccchhhh-----hhhhccccceeEEEEecCccEEEecCCccchh-heeHHHHHHHHHHhc-Cc
Confidence            34433334444 679999999997     89999999999999988   899999999999 999987 56676766 99


Q ss_pred             cCCEEEEEEcCCCCeEEeecCCC-------CC----ccccCCcceEEEeecCCCe--EEEecCCcEEEEEeCCCCcccce
Q 006825          380 FKSIRTVASSVTGHKERRSSDER-------DT----SSEKGGRRSSSATDDSQDV--SFHGQERVRVRQYGKSCKDLTAL  446 (630)
Q Consensus       380 ~~~V~sVAfSpdG~~lasgS~D~-------dt----~s~~gh~~~Vsa~~~s~d~--l~Sgs~Dg~VriWd~~~~el~~~  446 (630)
                      .-.|.+|+|-|-|.++++.+.|+       ++    ..+.+|.-.|..++..+|+  +++++.|-+|++|-..+++    
T Consensus       193 ~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~----  268 (406)
T KOG0295|consen  193 EHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQ----  268 (406)
T ss_pred             ccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccch----
Confidence            99999999999999999999998       23    3489999999999999999  7899999999999988875    


Q ss_pred             eeeeEecccCcCEEEEEEccC---------------CCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEE
Q 006825          447 YKCQEIQAHNGSIWSIKFSLD---------------GRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANG  511 (630)
Q Consensus       447 ~~v~tL~gHt~~V~sVaFSpD---------------G~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svaf  511 (630)
                       |.+.|.+|..+|.|++|.|.               +++|++++.|++||+||+.++.++.+|     .+|...|..++|
T Consensus       269 -~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL-----~ghdnwVr~~af  342 (406)
T KOG0295|consen  269 -CKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTL-----VGHDNWVRGVAF  342 (406)
T ss_pred             -hhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEE-----ecccceeeeeEE
Confidence             56789999999999999873               259999999999999999999999996     899999999999


Q ss_pred             CCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeC-CCCceEEeccCCCCEEEEEEcCC-CeEEEEECCCc
Q 006825          512 SPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKT  589 (630)
Q Consensus       512 Spdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL~GHs~~V~sLafSPd-~~LaSgS~Dgt  589 (630)
                      +|-|+||+++.+|+++                       ++|++ .+++.+++..|..-|+++.|+.+ .+++||+-|-+
T Consensus       343 ~p~Gkyi~ScaDDktl-----------------------rvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt  399 (406)
T KOG0295|consen  343 SPGGKYILSCADDKTL-----------------------RVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQT  399 (406)
T ss_pred             cCCCeEEEEEecCCcE-----------------------EEEEeccceeeeccCCCcceeEEEecCCCCceEEeccccce
Confidence            9999999999999999                       89998 78999999999999999999999 99999999999


Q ss_pred             EEEEeC
Q 006825          590 VRLWHL  595 (630)
Q Consensus       590 VrIWDl  595 (630)
                      +++|..
T Consensus       400 ~KvwEc  405 (406)
T KOG0295|consen  400 VKVWEC  405 (406)
T ss_pred             eeeeec
Confidence            999964

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.96  E-value=4.8e-27  Score=260.52  Aligned_cols=232  Identities=21%  Similarity=0.276  Sum_probs=203.4

Q ss_pred             eeeecC-ccceeEEEeec---ceEeecCCCccEecccCCCCc--eeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCcc
Q 006825          333 EMCVGH-SPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGG--MKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSS  406 (630)
Q Consensus       333 ~~l~GH-s~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~--~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s  406 (630)
                      ..+.+| ...|.++.|++   .+++++.|++++ +|+..+++  .++.+. +|...|..++|+|+|++++          
T Consensus       152 ~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~-~~~~~~~~~~~~~~l~-~h~~~v~~~~fs~d~~~l~----------  219 (456)
T KOG0266|consen  152 QTLAGHECPSVTCVDFSPDGRALAAASSDGLIR-IWKLEGIKSNLLRELS-GHTRGVSDVAFSPDGSYLL----------  219 (456)
T ss_pred             eeecccccCceEEEEEcCCCCeEEEccCCCcEE-Eeecccccchhhcccc-ccccceeeeEECCCCcEEE----------
Confidence            455554 88999999999   899999999999 99998888  788886 9999999999999998775          


Q ss_pred             ccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECc
Q 006825          407 EKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVV  486 (630)
Q Consensus       407 ~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~  486 (630)
                                         +++.|++||+||....    ..++++|+||...|++++|+|+|++|++|+.|++|||||+.
T Consensus       220 -------------------s~s~D~tiriwd~~~~----~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~  276 (456)
T KOG0266|consen  220 -------------------SGSDDKTLRIWDLKDD----GRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVR  276 (456)
T ss_pred             -------------------EecCCceEEEeeccCC----CeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEecc
Confidence                               4556678999999333    23678999999999999999999999999999999999999


Q ss_pred             CCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeC-CCC--ceEEe
Q 006825          487 ESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDK--PICSF  563 (630)
Q Consensus       487 tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk--~l~tL  563 (630)
                      ++++...+     .+|...|..++|++++.+|++++.|+.|                       ++|++ ++.  ++.++
T Consensus       277 ~~~~~~~l-----~~hs~~is~~~f~~d~~~l~s~s~d~~i-----------------------~vwd~~~~~~~~~~~~  328 (456)
T KOG0266|consen  277 TGECVRKL-----KGHSDGISGLAFSPDGNLLVSASYDGTI-----------------------RVWDLETGSKLCLKLL  328 (456)
T ss_pred             CCeEEEee-----eccCCceEEEEECCCCCEEEEcCCCccE-----------------------EEEECCCCceeeeecc
Confidence            99998885     8999999999999999999999999999                       88888 555  46788


Q ss_pred             ccCCCC--EEEEEEcCC-CeEEEEECCCcEEEEeCCCCcEEEEEe-cCCceEEEE----cCCCcEEEEecce
Q 006825          564 QGHLDD--VLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYDISLV----DRLMLRFAYGAFL  627 (630)
Q Consensus       564 ~GHs~~--V~sLafSPd-~~LaSgS~DgtVrIWDl~tg~~l~t~~-H~~~V~sVa----s~~~~~lAsgs~~  627 (630)
                      .++...  |+.++|+|+ .+|++++.|+++++||+..+.++.++. |...++|+.    .+.+.++.+++.+
T Consensus       329 ~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d  400 (456)
T KOG0266|consen  329 SGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSED  400 (456)
T ss_pred             cCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCC
Confidence            888776  999999999 999999999999999999999999998 777666765    6677777777644

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.96  E-value=4e-26  Score=225.04  Aligned_cols=260  Identities=22%  Similarity=0.283  Sum_probs=225.2

Q ss_pred             eeeecCccceeEEEeec---ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCC-------
Q 006825          333 EMCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDER-------  402 (630)
Q Consensus       333 ~~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~-------  402 (630)
                      .++.+|...|.++.|+|   .+++++.|+.++ +|+..+++....+. +|...|..+.|+|+++++++++.++       
T Consensus         3 ~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~-i~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~   80 (289)
T cd00200           3 RTLKGHTGGVTCVAFSPDGKLLATGSGDGTIK-VWDLETGELLRTLK-GHTGPVRDVAASADGTYLASGSSDKTIRLWDL   80 (289)
T ss_pred             hHhcccCCCEEEEEEcCCCCEEEEeecCcEEE-EEEeeCCCcEEEEe-cCCcceeEEEECCCCCEEEEEcCCCeEEEEEc
Confidence            56779999999999998   789999999999 99999998888888 8999999999999999999998776       


Q ss_pred             C----CccccCCcceEEEeecCCCe--EEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeC
Q 006825          403 D----TSSEKGGRRSSSATDDSQDV--SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGE  476 (630)
Q Consensus       403 d----t~s~~gh~~~Vsa~~~s~d~--l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~  476 (630)
                      +    ......|...+.++.+.++.  ++++..++.|++|+....+     ....+..|...|.+++|+|++++|++++.
T Consensus        81 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-----~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  155 (289)
T cd00200          81 ETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGK-----CLTTLRGHTDWVNSVAFSPDGTFVASSSQ  155 (289)
T ss_pred             CcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcE-----EEEEeccCCCcEEEEEEcCcCCEEEEEcC
Confidence            1    12256777789999988864  6677779999999997543     45677899999999999999999999998


Q ss_pred             CCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeC-
Q 006825          477 DCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-  555 (630)
Q Consensus       477 DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-  555 (630)
                      |+.|++||+.+++....+     ..|...+.++.|+|++..+++++.++.+                       .+|++ 
T Consensus       156 ~~~i~i~d~~~~~~~~~~-----~~~~~~i~~~~~~~~~~~l~~~~~~~~i-----------------------~i~d~~  207 (289)
T cd00200         156 DGTIKLWDLRTGKCVATL-----TGHTGEVNSVAFSPDGEKLLSSSSDGTI-----------------------KLWDLS  207 (289)
T ss_pred             CCcEEEEEccccccceeE-----ecCccccceEEECCCcCEEEEecCCCcE-----------------------EEEECC
Confidence            999999999888777664     5777899999999999999998889998                       78888 


Q ss_pred             CCCceEEeccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCCCcEEEEEe-cCCceEEEE-cCCCcEEEEecce
Q 006825          556 SDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYDISLV-DRLMLRFAYGAFL  627 (630)
Q Consensus       556 sgk~l~tL~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg~~l~t~~-H~~~V~sVa-s~~~~~lAsgs~~  627 (630)
                      .++.+..+.+|...|.+++|+|+ .++++++.|+.|++||+.+++++..+. |...|.+++ .+.+..+++++..
T Consensus       208 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  282 (289)
T cd00200         208 TGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSAD  282 (289)
T ss_pred             CCceecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecCC
Confidence            56788888899999999999998 788888889999999999999999988 999999999 7777777777654

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.96  E-value=2.5e-26  Score=252.97  Aligned_cols=283  Identities=17%  Similarity=0.159  Sum_probs=221.4

Q ss_pred             eeeecCccceeEEEeec---ceEeecCCCccEecccCCCCce--eEEecCCccCCEEEEEEcCCCCeEEeecCCC-----
Q 006825          333 EMCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGM--KSKKKGSWFKSIRTVASSVTGHKERRSSDER-----  402 (630)
Q Consensus       333 ~~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~--~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~-----  402 (630)
                      .++.||-.-|.+|-|+.   .+++||.|.++| +|++..-+-  ...+. ||...|-++-|..+...+.+-+.|+     
T Consensus       139 r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~r-l~~v~~~k~~~~~~l~-gHkd~VvacfF~~~~~~l~tvskdG~l~~W  216 (893)
T KOG0291|consen  139 RTYLGHFDDITSIDWSDDSRLLVTGSRDLSAR-LFGVDGNKNLFTYALN-GHKDYVVACFFGANSLDLYTVSKDGALFVW  216 (893)
T ss_pred             eeecCCccceeEEEeccCCceEEeccccceEE-EEEeccccccceEecc-CCCcceEEEEeccCcceEEEEecCceEEEE
Confidence            56889999999999988   899999999999 999876544  44555 9999999999998888887766554     


Q ss_pred             --C-------C----------------cc---------------ccCCcceEEEeecCCCe--EEEecC-----------
Q 006825          403 --D-------T----------------SS---------------EKGGRRSSSATDDSQDV--SFHGQE-----------  429 (630)
Q Consensus       403 --d-------t----------------~s---------------~~gh~~~Vsa~~~s~d~--l~Sgs~-----------  429 (630)
                        +       .                ..               +.....-|+|.+|.+..  +++|-.           
T Consensus       217 ~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~  296 (893)
T KOG0291|consen  217 TCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPD  296 (893)
T ss_pred             EecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecCCeeEEEecCC
Confidence              1       0                00               11111234444444322  333332           


Q ss_pred             --------------------------------CcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCC
Q 006825          430 --------------------------------RVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGED  477 (630)
Q Consensus       430 --------------------------------Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~D  477 (630)
                                                      -|.+.+|+++...+     +...+||...|.+++++|||+++|||++|
T Consensus       297 f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsY-----VlKQQgH~~~i~~l~YSpDgq~iaTG~eD  371 (893)
T KOG0291|consen  297 FNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESY-----VLKQQGHSDRITSLAYSPDGQLIATGAED  371 (893)
T ss_pred             ceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccce-----eeeccccccceeeEEECCCCcEEEeccCC
Confidence                                            34555665544321     34567999999999999999999999999


Q ss_pred             CcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeeccccccccccccc-----------C--
Q 006825          478 CVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSL-----------D--  544 (630)
Q Consensus       478 gtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~-----------d--  544 (630)
                      |.|||||...+-|..++     ..|...|..+.|+..++.+++.+.||+|+.|+..+...-.++..           |  
T Consensus       372 gKVKvWn~~SgfC~vTF-----teHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~s  446 (893)
T KOG0291|consen  372 GKVKVWNTQSGFCFVTF-----TEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPS  446 (893)
T ss_pred             CcEEEEeccCceEEEEe-----ccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCC
Confidence            99999999999999984     89999999999999999999999999999999877544333221           1  


Q ss_pred             cccc--------ccEEEeC-CCCceEEeccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCC-CcEEEEEecCCceEEE
Q 006825          545 HMVV--------PETVFAL-SDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSS-KTCLKIFSHSDYDISL  613 (630)
Q Consensus       545 ~~i~--------~~~Vwdl-sgk~l~tL~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~t-g~~l~t~~H~~~V~sV  613 (630)
                      +.++        ...+|.+ +|+.+-.|.||.++|.+|+|+|. ..|+|+|+|+||||||+-. ...+.++.+...|+.+
T Consensus       447 GelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~i~sdvl~v  526 (893)
T KOG0291|consen  447 GELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLEIRSDVLAV  526 (893)
T ss_pred             CCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeEeeccceeEE
Confidence            2221        1279999 99999999999999999999999 9999999999999999865 3567788888899999


Q ss_pred             E-cCCCcEEEEecce
Q 006825          614 V-DRLMLRFAYGAFL  627 (630)
Q Consensus       614 a-s~~~~~lAsgs~~  627 (630)
                      + .|++.-+|.+..+
T Consensus       527 sfrPdG~elaVaTld  541 (893)
T KOG0291|consen  527 SFRPDGKELAVATLD  541 (893)
T ss_pred             EEcCCCCeEEEEEec
Confidence            9 9999988887543

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=99.96  E-value=2.1e-26  Score=227.55  Aligned_cols=271  Identities=18%  Similarity=0.188  Sum_probs=225.3

Q ss_pred             eecCCCceeEEEEcCCCceEeeecceeeecCccceeEEEeec---ceEeecCCCccEecccCCCCc--eeEEecCCccCC
Q 006825          308 EIQEDGTWKKVKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGG--MKSKKKGSWFKS  382 (630)
Q Consensus       308 e~~~dg~~~~l~dv~TG~~lt~eef~~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~--~~~~lk~gH~~~  382 (630)
                      ..+.|. +.|+|+..||++.     .++.-....|..|...|   .||.+++ ..|| ++|++++.  .+.++. +|.+.
T Consensus        15 sA~YDh-TIRfWqa~tG~C~-----rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvR-lyD~~S~np~Pv~t~e-~h~kN   85 (311)
T KOG0315|consen   15 SAGYDH-TIRFWQALTGICS-----RTIQHPDSQVNRLEITPDKKDLAAAGN-QHVR-LYDLNSNNPNPVATFE-GHTKN   85 (311)
T ss_pred             eccCcc-eeeeeehhcCeEE-----EEEecCccceeeEEEcCCcchhhhccC-CeeE-EEEccCCCCCceeEEe-ccCCc
Confidence            334454 4789999999999     77776677899999999   6777666 6899 99999876  477887 99999


Q ss_pred             EEEEEEcCCCCeEEeecCCC-----CCc-----cccCCcceEEEeecCCCe--EEEecCCcEEEEEeCCCCcccceeeee
Q 006825          383 IRTVASSVTGHKERRSSDER-----DTS-----SEKGGRRSSSATDDSQDV--SFHGQERVRVRQYGKSCKDLTALYKCQ  450 (630)
Q Consensus       383 V~sVAfSpdG~~lasgS~D~-----dt~-----s~~gh~~~Vsa~~~s~d~--l~Sgs~Dg~VriWd~~~~el~~~~~v~  450 (630)
                      |.+|.|.-+|+.+.+|++|.     |..     ....|...|+++...+..  |++|..+|.||+||+.....    ..+
T Consensus        86 VtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c----~~~  161 (311)
T KOG0315|consen   86 VTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSC----THE  161 (311)
T ss_pred             eEEEEEeecCeEEEecCCCceEEEEeccCcccchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCcc----ccc
Confidence            99999999999999999998     222     255677888888887766  99999999999999976532    122


Q ss_pred             EecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeee-cccccCcccceEEEEECCCCCEEEEeeCCCeeee
Q 006825          451 EIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELL-EKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEK  529 (630)
Q Consensus       451 tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~-~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i  529 (630)
                      -+..-..+|.++...|||.+|+.+-.-|++.+|++.+.....++. ...+..|...+..+.++||+++|++++.|.++  
T Consensus       162 liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv--  239 (311)
T KOG0315|consen  162 LIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTV--  239 (311)
T ss_pred             cCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceE--
Confidence            234455789999999999999999999999999998766555443 33468899999999999999999999999999  


Q ss_pred             ecccccccccccccCccccccEEEeCCC--CceEEeccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCCCcEEEEEe-
Q 006825          530 KRRGRSINRKSLSLDHMVVPETVFALSD--KPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-  605 (630)
Q Consensus       530 ~~~~~~~~~~s~s~d~~i~~~~Vwdlsg--k~l~tL~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg~~l~t~~-  605 (630)
                                           +||...+  +.-..++||...|.+.+||.| .||+||+.|+++|+|++..++.++.+. 
T Consensus       240 ---------------------~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~g  298 (311)
T KOG0315|consen  240 ---------------------KIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQG  298 (311)
T ss_pred             ---------------------EEEecCCceeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCceeeecCC
Confidence                                 6776644  455678999999999999999 999999999999999999999999998 


Q ss_pred             cCCceEEEE
Q 006825          606 HSDYDISLV  614 (630)
Q Consensus       606 H~~~V~sVa  614 (630)
                      |.....|++
T Consensus       299 h~K~~vc~~  307 (311)
T KOG0315|consen  299 HHKAAVCVA  307 (311)
T ss_pred             cccccEEEE
Confidence            666666665

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=99.96  E-value=1.3e-27  Score=265.34  Aligned_cols=257  Identities=19%  Similarity=0.187  Sum_probs=209.1

Q ss_pred             eeeecCccceeEEEeec---ceEeecCCCccEecccCCCCceeEEecC-CccCCEEEEEEcCCCCeEEeecCCC---CCc
Q 006825          333 EMCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKKKG-SWFKSIRTVASSVTGHKERRSSDER---DTS  405 (630)
Q Consensus       333 ~~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~lk~-gH~~~V~sVAfSpdG~~lasgS~D~---dt~  405 (630)
                      -++..--..|.+..|++   .||-|-.|..|+ +|.+..- .+++++. .+...+..  -+.| ...- -.++.   ...
T Consensus       372 YT~~nt~~~v~ca~fSddssmlA~Gf~dS~i~-~~Sl~p~-kl~~lk~~~~l~~~d~--~sad-~~~~-~~D~~~~~~~~  445 (707)
T KOG0263|consen  372 YTFHNTYQGVTCAEFSDDSSMLACGFVDSSVR-VWSLTPK-KLKKLKDASDLSNIDT--ESAD-VDVD-MLDDDSSGTSR  445 (707)
T ss_pred             EEEEEcCCcceeEeecCCcchhhccccccEEE-EEecchh-hhccccchhhhccccc--cccc-hhhh-hccccCCceeE
Confidence            34444445678888887   789999999999 9987543 3333331 11111100  0000 0000 00111   123


Q ss_pred             cccCCcceEEEeecCCCe--EEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEE
Q 006825          406 SEKGGRRSSSATDDSQDV--SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVW  483 (630)
Q Consensus       406 s~~gh~~~Vsa~~~s~d~--l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVW  483 (630)
                      .+.||..+|....|+++.  |+++++|++||+|.+.+..     ++-.++||..+||.+.|+|-|-|+||||.|+|.++|
T Consensus       446 ~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s-----~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLW  520 (707)
T KOG0263|consen  446 TLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWS-----CLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLW  520 (707)
T ss_pred             EeecCCCceeeeeecccccceeeccCCcceeeeecccce-----eEEEecCCCcceeeEEecCCceEEEecCCCceeeee
Confidence            388899999999998887  8999999999999987663     677889999999999999999999999999999999


Q ss_pred             ECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeC-CCCceEE
Q 006825          484 QVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICS  562 (630)
Q Consensus       484 Dl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~t  562 (630)
                      ........+.     +.+|..-|.|+.|+|...|+++|+.|.++                       ++|++ +|..++.
T Consensus       521 s~d~~~PlRi-----faghlsDV~cv~FHPNs~Y~aTGSsD~tV-----------------------RlWDv~~G~~VRi  572 (707)
T KOG0263|consen  521 STDHNKPLRI-----FAGHLSDVDCVSFHPNSNYVATGSSDRTV-----------------------RLWDVSTGNSVRI  572 (707)
T ss_pred             ecccCCchhh-----hcccccccceEEECCcccccccCCCCceE-----------------------EEEEcCCCcEEEE
Confidence            9988777766     58999999999999999999999999999                       89998 8999999


Q ss_pred             eccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCCCcEEEEEe-cCCceEEEE-cCCCcEEEEeccee
Q 006825          563 FQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYDISLV-DRLMLRFAYGAFLN  628 (630)
Q Consensus       563 L~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg~~l~t~~-H~~~V~sVa-s~~~~~lAsgs~~n  628 (630)
                      |.||.++|++|+|||+ .+|+||+.|+.|+|||+.+++.+..+. |.+.|.+|. +.++..|++|+.++
T Consensus       573 F~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~Dn  641 (707)
T KOG0263|consen  573 FTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADN  641 (707)
T ss_pred             ecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCC
Confidence            9999999999999999 999999999999999999999999998 999999999 99999999998764

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=99.95  E-value=2.4e-28  Score=249.78  Aligned_cols=249  Identities=15%  Similarity=0.192  Sum_probs=214.7

Q ss_pred             eeEEEEcCCCceEeeecceeeecCccceeEEEeec-ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCC
Q 006825          315 WKKVKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQ-NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGH  393 (630)
Q Consensus       315 ~~~l~dv~TG~~lt~eef~~l~GHs~~V~~Lafs~-~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~  393 (630)
                      +..+||..+-.++     ..|.||++.|.+|.|-. .++|||.|.||| +||++||+++.++. +|...|..+.|+.  .
T Consensus       218 TikiWD~n~~~c~-----~~L~GHtGSVLCLqyd~rviisGSSDsTvr-vWDv~tge~l~tli-hHceaVLhlrf~n--g  288 (499)
T KOG0281|consen  218 TIKIWDKNSLECL-----KILTGHTGSVLCLQYDERVIVSGSSDSTVR-VWDVNTGEPLNTLI-HHCEAVLHLRFSN--G  288 (499)
T ss_pred             ceEEeccccHHHH-----HhhhcCCCcEEeeeccceEEEecCCCceEE-EEeccCCchhhHHh-hhcceeEEEEEeC--C
Confidence            5779999987777     89999999999999987 899999999999 99999999999998 9999999999986  6


Q ss_pred             eEEeecCCCC-------Cc-------cccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCE
Q 006825          394 KERRSSDERD-------TS-------SEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSI  459 (630)
Q Consensus       394 ~lasgS~D~d-------t~-------s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V  459 (630)
                      ++++.|.|+.       ..       -+.||...|..++|....+++++.|.+|++|++.+.+     ++++|.||...|
T Consensus       289 ~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~kyIVsASgDRTikvW~~st~e-----fvRtl~gHkRGI  363 (499)
T KOG0281|consen  289 YMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWSTSTCE-----FVRTLNGHKRGI  363 (499)
T ss_pred             EEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccccceEEEecCCceEEEEecccee-----eehhhhcccccc
Confidence            8999999981       11       1899999999999999999999999999999998886     589999999999


Q ss_pred             EEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeeccccccccc
Q 006825          460 WSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRK  539 (630)
Q Consensus       460 ~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~  539 (630)
                      .|+.+  .|++++|||.|.+||+||+..|.+++.|     .||..-|.++.|  +.+.|++|+.||+|++|+........
T Consensus       364 AClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvL-----eGHEeLvRciRF--d~krIVSGaYDGkikvWdl~aaldpr  434 (499)
T KOG0281|consen  364 ACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVL-----EGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLQAALDPR  434 (499)
T ss_pred             eehhc--cCeEEEecCCCceEEEEeccccHHHHHH-----hchHHhhhheee--cCceeeeccccceEEEEecccccCCc
Confidence            99998  7999999999999999999999999885     999999999999  56789999999999555443211100


Q ss_pred             ccccCccccccEEEeCCCCceEEeccCCCCEEEEEEcCCCeEEEEECCCcEEEEeCCCCcE
Q 006825          540 SLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTC  600 (630)
Q Consensus       540 s~s~d~~i~~~~Vwdlsgk~l~tL~GHs~~V~sLafSPd~~LaSgS~DgtVrIWDl~tg~~  600 (630)
                      ..+             ..-++.++..|++.|..+.|.. -.+++++.|.+|.|||...+..
T Consensus       435 a~~-------------~~~Cl~~lv~hsgRVFrLQFD~-fqIvsssHddtILiWdFl~~~~  481 (499)
T KOG0281|consen  435 APA-------------STLCLRTLVEHSGRVFRLQFDE-FQIISSSHDDTILIWDFLNGPP  481 (499)
T ss_pred             ccc-------------cchHHHhhhhccceeEEEeecc-eEEEeccCCCeEEEEEcCCCCc
Confidence            000             1125677888999999999954 7889999999999999987643

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=1.3e-27  Score=258.58  Aligned_cols=259  Identities=14%  Similarity=0.097  Sum_probs=229.9

Q ss_pred             eeeecCccceeEEEeec---ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCC-------
Q 006825          333 EMCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDER-------  402 (630)
Q Consensus       333 ~~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~-------  402 (630)
                      .++..|++.|+++-|+|   .+.++=..+.+. ||+-.|....+.+. --.-+|++..|-+.-+++++||+|.       
T Consensus         7 rk~~~rSdRVKsVd~HPtePw~la~LynG~V~-IWnyetqtmVksfe-V~~~PvRa~kfiaRknWiv~GsDD~~IrVfny   84 (794)
T KOG0276|consen    7 RKFQSRSDRVKSVDFHPTEPWILAALYNGDVQ-IWNYETQTMVKSFE-VSEVPVRAAKFIARKNWIVTGSDDMQIRVFNY   84 (794)
T ss_pred             hHhhccCCceeeeecCCCCceEEEeeecCeeE-EEecccceeeeeee-ecccchhhheeeeccceEEEecCCceEEEEec
Confidence            34566999999999999   566667779999 99999999998887 6778999999999999999999997       


Q ss_pred             C----CccccCCcceEEEeecCCCe--EEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEcc-CCCEEEEEe
Q 006825          403 D----TSSEKGGRRSSSATDDSQDV--SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSL-DGRYLASAG  475 (630)
Q Consensus       403 d----t~s~~gh~~~Vsa~~~s~d~--l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSp-DG~~LASgS  475 (630)
                      .    ...+..|..-+.+++..|..  ++++++|-+|++|++..+    ..|.|+|.||+..|.+|+|+| |.+.+||++
T Consensus        85 nt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~----wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~s  160 (794)
T KOG0276|consen   85 NTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENE----WACEQTFEGHEHYVMQVAFNPKDPNTFASAS  160 (794)
T ss_pred             ccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCc----eeeeeEEcCcceEEEEEEecCCCccceeeee
Confidence            2    23388899999999988876  899999999999999754    458899999999999999999 888999999


Q ss_pred             CCCcEEEEECcCCceeeeeecccccCcccceEEEEECCC--CCEEEEeeCCCeeeeecccccccccccccCccccccEEE
Q 006825          476 EDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPE--PTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVF  553 (630)
Q Consensus       476 ~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpd--g~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vw  553 (630)
                      .|+|||||.+....+..+|     .+|...|.++.+-+-  -.++++|++|.+|                       +||
T Consensus       161 LDrTVKVWslgs~~~nfTl-----~gHekGVN~Vdyy~~gdkpylIsgaDD~ti-----------------------KvW  212 (794)
T KOG0276|consen  161 LDRTVKVWSLGSPHPNFTL-----EGHEKGVNCVDYYTGGDKPYLISGADDLTI-----------------------KVW  212 (794)
T ss_pred             ccccEEEEEcCCCCCceee-----eccccCcceEEeccCCCcceEEecCCCceE-----------------------EEe
Confidence            9999999999888888875     899999999999765  4799999999999                       889


Q ss_pred             eC-CCCceEEeccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCCCcEEEEEe-cCCceEEEE-cCCCcEEEEec
Q 006825          554 AL-SDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYDISLV-DRLMLRFAYGA  625 (630)
Q Consensus       554 dl-sgk~l~tL~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg~~l~t~~-H~~~V~sVa-s~~~~~lAsgs  625 (630)
                      |. +..|+++|+||+..|..+.|+|. .+++|||.|||||||+..|-++..++. ....||||+ ......++.|.
T Consensus       213 DyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~  288 (794)
T KOG0276|consen  213 DYQTKSCVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAVGF  288 (794)
T ss_pred             ecchHHHHHHhhcccccceEEEecCCCcEEEEecCCccEEEecCcceehhhhhhcCCceEEEEeecCCCCeEEEec
Confidence            98 67899999999999999999999 999999999999999999999988888 889999999 55555566663

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.95  E-value=3.1e-27  Score=244.35  Aligned_cols=262  Identities=19%  Similarity=0.170  Sum_probs=217.2

Q ss_pred             eeeecCccceeEEEeec-ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCC---eEEeecCCC------
Q 006825          333 EMCVGHSPIVQELMRRQ-NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGH---KERRSSDER------  402 (630)
Q Consensus       333 ~~l~GHs~~V~~Lafs~-~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~---~lasgS~D~------  402 (630)
                      +...-|-+.|.++--.+ .+.||++|+++| +||. .|+...+.. ||.++|++|++.-...   .+++++.|+      
T Consensus        99 l~~~~hdDWVSsv~~~~~~IltgsYDg~~r-iWd~-~Gk~~~~~~-Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~  175 (423)
T KOG0313|consen   99 LQCFLHDDWVSSVKGASKWILTGSYDGTSR-IWDL-KGKSIKTIV-GHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWK  175 (423)
T ss_pred             cccccchhhhhhhcccCceEEEeecCCeeE-EEec-CCceEEEEe-cCCcceeeeEEEecCCccceEEEecCCceEEEEE
Confidence            34556888888877767 899999999999 9997 689999998 9999999888875333   499999997      


Q ss_pred             -C--------CccccCCcceEEEeecCCCe--EEEecCCcEEEEEeCCCCcc--------------------cceeeeeE
Q 006825          403 -D--------TSSEKGGRRSSSATDDSQDV--SFHGQERVRVRQYGKSCKDL--------------------TALYKCQE  451 (630)
Q Consensus       403 -d--------t~s~~gh~~~Vsa~~~s~d~--l~Sgs~Dg~VriWd~~~~el--------------------~~~~~v~t  451 (630)
                       +        ...-+||.+.|-++....++  +++|+.|.+|.+|+....+.                    ..-..+-+
T Consensus       176 ~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vt  255 (423)
T KOG0313|consen  176 WNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVT  255 (423)
T ss_pred             ecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEE
Confidence             1        11145999999999988887  89999999999999332110                    11124568


Q ss_pred             ecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeec
Q 006825          452 IQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKR  531 (630)
Q Consensus       452 L~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~  531 (630)
                      |.||+++|.+|.|++ ...+.|+|.|.|||+||+.++..+..+.      ....++++.++|...+|++|+.|.+|    
T Consensus       256 l~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~------~~ksl~~i~~~~~~~Ll~~gssdr~i----  324 (423)
T KOG0313|consen  256 LEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLT------TNKSLNCISYSPLSKLLASGSSDRHI----  324 (423)
T ss_pred             ecccccceeeEEEcC-CCceEeecccceEEEEEeecccceeeee------cCcceeEeecccccceeeecCCCCce----
Confidence            899999999999998 6789999999999999999999887752      23578899999999999999999999    


Q ss_pred             ccccccccccccCccccccEEEeC---CC-CceEEeccCCCCEEEEEEcCC--CeEEEEECCCcEEEEeCCCCc-EEEEE
Q 006825          532 RGRSINRKSLSLDHMVVPETVFAL---SD-KPICSFQGHLDDVLDLSWSKS--QHLLSSSMDKTVRLWHLSSKT-CLKIF  604 (630)
Q Consensus       532 ~~~~~~~~s~s~d~~i~~~~Vwdl---sg-k~l~tL~GHs~~V~sLafSPd--~~LaSgS~DgtVrIWDl~tg~-~l~t~  604 (630)
                                         ++||.   .+ ...++|.||.+.|.++.|+|.  .+|+|||.|+++++||+++-. +++.+
T Consensus       325 -------------------rl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI  385 (423)
T KOG0313|consen  325 -------------------RLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDI  385 (423)
T ss_pred             -------------------eecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceee
Confidence                               55655   22 345689999999999999997  889999999999999999877 99999


Q ss_pred             e-cCCceEEEEcCCCcEEEEecce
Q 006825          605 S-HSDYDISLVDRLMLRFAYGAFL  627 (630)
Q Consensus       605 ~-H~~~V~sVas~~~~~lAsgs~~  627 (630)
                      . |.+.|.++.-..+..+++|+.+
T Consensus       386 ~~h~DKvl~vdW~~~~~IvSGGaD  409 (423)
T KOG0313|consen  386 AGHNDKVLSVDWNEGGLIVSGGAD  409 (423)
T ss_pred             ccCCceEEEEeccCCceEEeccCc
Confidence            8 9999999995567777788765

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=99.95  E-value=2.5e-26  Score=236.68  Aligned_cols=283  Identities=14%  Similarity=0.114  Sum_probs=224.5

Q ss_pred             ceeeecCccceeEEEeec---ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCcc--
Q 006825          332 FEMCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSS--  406 (630)
Q Consensus       332 f~~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s--  406 (630)
                      ..+|.+|+..|-+++..|   .+|||+.|.... +|+..+|.....+. ||+.+|.++.||.||.+||||..+.....  
T Consensus        57 ~~tF~~H~~svFavsl~P~~~l~aTGGgDD~Af-lW~~~~ge~~~elt-gHKDSVt~~~FshdgtlLATGdmsG~v~v~~  134 (399)
T KOG0296|consen   57 LVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAF-LWDISTGEFAGELT-GHKDSVTCCSFSHDGTLLATGDMSGKVLVFK  134 (399)
T ss_pred             eeehhhcCCceEEEEeCCCCceEEecCCCceEE-EEEccCCcceeEec-CCCCceEEEEEccCceEEEecCCCccEEEEE
Confidence            478999999999999998   799999999999 99999999999999 99999999999999999999988762211  


Q ss_pred             ---------ccCCcceEEEeecCCCe--EEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEe
Q 006825          407 ---------EKGGRRSSSATDDSQDV--SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAG  475 (630)
Q Consensus       407 ---------~~gh~~~Vsa~~~s~d~--l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS  475 (630)
                               +......+..+...+..  ++.|+.||.|++|.+..+.     ..+.+.||..++++=.|.|||+.++++.
T Consensus       135 ~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~-----~~kv~~Gh~~~ct~G~f~pdGKr~~tgy  209 (399)
T KOG0296|consen  135 VSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQA-----LCKVMSGHNSPCTCGEFIPDGKRILTGY  209 (399)
T ss_pred             cccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcc-----eeeEecCCCCCcccccccCCCceEEEEe
Confidence                     22233445556667765  8999999999999987642     4688999999999999999999999999


Q ss_pred             CCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccc-----------------
Q 006825          476 EDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINR-----------------  538 (630)
Q Consensus       476 ~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~-----------------  538 (630)
                      .|++|++||..+++++..+.    ........++.++..+..++.|..++.+.+-.....+-.                 
T Consensus       210 ~dgti~~Wn~ktg~p~~~~~----~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~  285 (399)
T KOG0296|consen  210 DDGTIIVWNPKTGQPLHKIT----QAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEEL  285 (399)
T ss_pred             cCceEEEEecCCCceeEEec----ccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhh
Confidence            99999999999998877752    111223445555555666666655554433221110000                 


Q ss_pred             ----------------cccccCccccccEEEeCCCCceEEeccCCCCEEEEEEcCCCeEEEEECCCcEEEEeCCCCcEEE
Q 006825          539 ----------------KSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLK  602 (630)
Q Consensus       539 ----------------~s~s~d~~i~~~~Vwdlsgk~l~tL~GHs~~V~sLafSPd~~LaSgS~DgtVrIWDl~tg~~l~  602 (630)
                                      ...+.++.+   .||++....++....|...|..+.|-++.+|++++.||.|++||.++|+++.
T Consensus       286 ~esve~~~~ss~lpL~A~G~vdG~i---~iyD~a~~~~R~~c~he~~V~~l~w~~t~~l~t~c~~g~v~~wDaRtG~l~~  362 (399)
T KOG0296|consen  286 DESVESIPSSSKLPLAACGSVDGTI---AIYDLAASTLRHICEHEDGVTKLKWLNTDYLLTACANGKVRQWDARTGQLKF  362 (399)
T ss_pred             hhhhhhcccccccchhhcccccceE---EEEecccchhheeccCCCceEEEEEcCcchheeeccCceEEeeeccccceEE
Confidence                            011223333   7899966666677779999999999998999999999999999999999999


Q ss_pred             EEe-cCCceEEEE-cCCCcEEEEeccee
Q 006825          603 IFS-HSDYDISLV-DRLMLRFAYGAFLN  628 (630)
Q Consensus       603 t~~-H~~~V~sVa-s~~~~~lAsgs~~n  628 (630)
                      ++. |...|.+++ .++...+.+.+.++
T Consensus       363 ~y~GH~~~Il~f~ls~~~~~vvT~s~D~  390 (399)
T KOG0296|consen  363 TYTGHQMGILDFALSPQKRLVVTVSDDN  390 (399)
T ss_pred             EEecCchheeEEEEcCCCcEEEEecCCC
Confidence            999 999999999 88888888887665

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=4.5e-27  Score=261.71  Aligned_cols=265  Identities=16%  Similarity=0.169  Sum_probs=228.0

Q ss_pred             eeecCccceeEEEeec---ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCC--------
Q 006825          334 MCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDER--------  402 (630)
Q Consensus       334 ~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~--------  402 (630)
                      .+..-+..|+.|+|+|   .+.++=--+.|+ +||-.=|.++.++. .|.++|+.|+|+|.+.++++|++|.        
T Consensus         4 kfEskSsRvKglsFHP~rPwILtslHsG~IQ-lWDYRM~tli~rFd-eHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk   81 (1202)
T KOG0292|consen    4 KFESKSSRVKGLSFHPKRPWILTSLHSGVIQ-LWDYRMGTLIDRFD-EHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYK   81 (1202)
T ss_pred             hhhcccccccceecCCCCCEEEEeecCceee-eehhhhhhHHhhhh-ccCCccceeeecCCCCeEEecCCccEEEEEecc
Confidence            4455678899999998   677777778999 99999999999998 9999999999999999999999997        


Q ss_pred             ---CCccccCCcceEEEeecCCCe--EEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCC
Q 006825          403 ---DTSSEKGGRRSSSATDDSQDV--SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGED  477 (630)
Q Consensus       403 ---dt~s~~gh~~~Vsa~~~s~d~--l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~D  477 (630)
                         -+-.+.||-.-|..+.|....  ++++++|-+||||++.++.     ++..|.||...|.|..|+|...+++|||.|
T Consensus        82 ~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~-----~iavltGHnHYVMcAqFhptEDlIVSaSLD  156 (1202)
T KOG0292|consen   82 TRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRK-----CIAVLTGHNHYVMCAQFHPTEDLIVSASLD  156 (1202)
T ss_pred             cceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCc-----eEEEEecCceEEEeeccCCccceEEEeccc
Confidence               123499999999999999988  9999999999999998885     789999999999999999999999999999


Q ss_pred             CcEEEEECcCCcee------------------------eeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeeccc
Q 006825          478 CVIHVWQVVESERK------------------------GELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRG  533 (630)
Q Consensus       478 gtIrVWDl~tg~~~------------------------~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~  533 (630)
                      .||||||+..-...                        -.+....+.||...|..++|+|.-.+|++|++|..|++|...
T Consensus       157 QTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmn  236 (1202)
T KOG0292|consen  157 QTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMN  236 (1202)
T ss_pred             ceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEec
Confidence            99999998421100                        001123358999999999999999999999999999555433


Q ss_pred             ccccccccccCccccccEEEeCCCCceEEeccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCCCcEEEEEe-cCCceE
Q 006825          534 RSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYDI  611 (630)
Q Consensus       534 ~~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg~~l~t~~-H~~~V~  611 (630)
                      ..               +.|.     +-+..||.+.|.++-|+|. .+++|.|.|++|||||+...+++++|. ..+.-|
T Consensus       237 et---------------KaWE-----vDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW  296 (1202)
T KOG0292|consen  237 ET---------------KAWE-----VDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFW  296 (1202)
T ss_pred             cc---------------ccee-----ehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeeeeccCCeEE
Confidence            21               3333     4467899999999999998 999999999999999999999999998 778889


Q ss_pred             EEE-cCCCcEEEEec
Q 006825          612 SLV-DRLMLRFAYGA  625 (630)
Q Consensus       612 sVa-s~~~~~lAsgs  625 (630)
                      +|+ +|.+..+|.|.
T Consensus       297 ~laahP~lNLfAAgH  311 (1202)
T KOG0292|consen  297 ILAAHPELNLFAAGH  311 (1202)
T ss_pred             EEEecCCcceeeeec
Confidence            999 99999998874

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=99.95  E-value=9.8e-28  Score=245.28  Aligned_cols=248  Identities=15%  Similarity=0.171  Sum_probs=215.3

Q ss_pred             CccceeEEEeec-ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCC-------CCc----
Q 006825          338 HSPIVQELMRRQ-NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDER-------DTS----  405 (630)
Q Consensus       338 Hs~~V~~Lafs~-~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~-------dt~----  405 (630)
                      -+..|.+|.+-. .++||..|+||+ +||.++-.+++++. ||+++|.|+.|-.  +.+++||.|.       +++    
T Consensus       196 ~skgVYClQYDD~kiVSGlrDnTik-iWD~n~~~c~~~L~-GHtGSVLCLqyd~--rviisGSSDsTvrvWDv~tge~l~  271 (499)
T KOG0281|consen  196 NSKGVYCLQYDDEKIVSGLRDNTIK-IWDKNSLECLKILT-GHTGSVLCLQYDE--RVIVSGSSDSTVRVWDVNTGEPLN  271 (499)
T ss_pred             cCCceEEEEecchhhhcccccCceE-EeccccHHHHHhhh-cCCCcEEeeeccc--eEEEecCCCceEEEEeccCCchhh
Confidence            456788888876 899999999999 99999999999999 9999998888754  6999999886       222    


Q ss_pred             cccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEEC
Q 006825          406 SEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQV  485 (630)
Q Consensus       406 s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl  485 (630)
                      .+-+|...|..+.|+...+++.+.|.+|++||+....  ...+.+.|.||..+|+.+.|  |.+|++|+|.|+|||+|++
T Consensus       272 tlihHceaVLhlrf~ng~mvtcSkDrsiaVWdm~sps--~it~rrVLvGHrAaVNvVdf--d~kyIVsASgDRTikvW~~  347 (499)
T KOG0281|consen  272 TLIHHCEAVLHLRFSNGYMVTCSKDRSIAVWDMASPT--DITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWST  347 (499)
T ss_pred             HHhhhcceeEEEEEeCCEEEEecCCceeEEEeccCch--HHHHHHHHhhhhhheeeecc--ccceEEEecCCceEEEEec
Confidence            3778999999999999999999999999999997653  34456789999999999999  6679999999999999999


Q ss_pred             cCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeC-CCCceEEec
Q 006825          486 VESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQ  564 (630)
Q Consensus       486 ~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL~  564 (630)
                      .+++.++++     .+|...|.++.+  .++++++|+.|.+|                       ++|++ .|++++.|+
T Consensus       348 st~efvRtl-----~gHkRGIAClQY--r~rlvVSGSSDntI-----------------------Rlwdi~~G~cLRvLe  397 (499)
T KOG0281|consen  348 STCEFVRTL-----NGHKRGIACLQY--RDRLVVSGSSDNTI-----------------------RLWDIECGACLRVLE  397 (499)
T ss_pred             cceeeehhh-----hcccccceehhc--cCeEEEecCCCceE-----------------------EEEeccccHHHHHHh
Confidence            999999985     899999998887  58999999999999                       89998 899999999


Q ss_pred             cCCCCEEEEEEcCCCeEEEEECCCcEEEEeCCCCc---------EEEEEe-cCCceEEEEcCCCcEEEEe
Q 006825          565 GHLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKT---------CLKIFS-HSDYDISLVDRLMLRFAYG  624 (630)
Q Consensus       565 GHs~~V~sLafSPd~~LaSgS~DgtVrIWDl~tg~---------~l~t~~-H~~~V~sVas~~~~~lAsg  624 (630)
                      ||..-|.++.|.. +.++||+.||+|||||+.++.         |+.++. |++.|.-+.......+++.
T Consensus       398 GHEeLvRciRFd~-krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD~fqIvsss  466 (499)
T KOG0281|consen  398 GHEELVRCIRFDN-KRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFDEFQIISSS  466 (499)
T ss_pred             chHHhhhheeecC-ceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEeecceEEEecc
Confidence            9999999999954 899999999999999998753         566665 9999988884444444443

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.95  E-value=3.7e-25  Score=218.16  Aligned_cols=227  Identities=23%  Similarity=0.321  Sum_probs=196.2

Q ss_pred             eeeecCccceeEEEeec---ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCC-----CC
Q 006825          333 EMCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDER-----DT  404 (630)
Q Consensus       333 ~~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~-----dt  404 (630)
                      ..+.+|...+..+.|.|   .+++++.|+.++ +|+..+++.+..+. +|...|.+++|+++++++++++.+.     +.
T Consensus        45 ~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~-i~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~  122 (289)
T cd00200          45 RTLKGHTGPVRDVAASADGTYLASGSSDKTIR-LWDLETGECVRTLT-GHTSYVSSVAFSPDGRILSSSSRDKTIKVWDV  122 (289)
T ss_pred             EEEecCCcceeEEEECCCCCEEEEEcCCCeEE-EEEcCcccceEEEe-ccCCcEEEEEEcCCCCEEEEecCCCeEEEEEC
Confidence            45667888888999988   699999999999 99999998888888 8999999999999999999888554     11


Q ss_pred             ------ccccCCcceEEEeecCCCe--EEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeC
Q 006825          405 ------SSEKGGRRSSSATDDSQDV--SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGE  476 (630)
Q Consensus       405 ------~s~~gh~~~Vsa~~~s~d~--l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~  476 (630)
                            .....|...+.++.+.++.  ++++..++.|++|+....+     .+..+..|...|.+++|+|+++.|++++.
T Consensus       123 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~-----~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  197 (289)
T cd00200         123 ETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGK-----CVATLTGHTGEVNSVAFSPDGEKLLSSSS  197 (289)
T ss_pred             CCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccc-----cceeEecCccccceEEECCCcCEEEEecC
Confidence                  1255688889999999865  6666679999999997554     35667899999999999999999999999


Q ss_pred             CCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeC-
Q 006825          477 DCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-  555 (630)
Q Consensus       477 DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-  555 (630)
                      |+.|++||+.+++....+     ..|...+..+.|+|++.++++++.++.+                       .+|++ 
T Consensus       198 ~~~i~i~d~~~~~~~~~~-----~~~~~~i~~~~~~~~~~~~~~~~~~~~i-----------------------~i~~~~  249 (289)
T cd00200         198 DGTIKLWDLSTGKCLGTL-----RGHENGVNSVAFSPDGYLLASGSEDGTI-----------------------RVWDLR  249 (289)
T ss_pred             CCcEEEEECCCCceecch-----hhcCCceEEEEEcCCCcEEEEEcCCCcE-----------------------EEEEcC
Confidence            999999999987776663     5778899999999999999888879998                       78887 


Q ss_pred             CCCceEEeccCCCCEEEEEEcCC-CeEEEEECCCcEEEEe
Q 006825          556 SDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWH  594 (630)
Q Consensus       556 sgk~l~tL~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWD  594 (630)
                      +++++..+.+|...|.+++|+|+ .+|++++.|+.|++|+
T Consensus       250 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~  289 (289)
T cd00200         250 TGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD  289 (289)
T ss_pred             CceeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence            57888889999999999999999 9999999999999996

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=3.1e-26  Score=238.65  Aligned_cols=263  Identities=19%  Similarity=0.210  Sum_probs=213.1

Q ss_pred             eeecCCCCcccCCCccccccCCCCCcccccccEEEEECCCCcEEEEeeecCCCceeEEEEcCCCceEeeecceeeecCcc
Q 006825          261 MSINGNGNYIGNSGEVVEDFDGNGTAGVAEQGCLIKNLDNGKEFVVNEIQEDGTWKKVKEVGTGRQLTIEEFEMCVGHSP  340 (630)
Q Consensus       261 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~LddG~~~~v~e~~~dg~~~~l~dv~TG~~lt~eef~~l~GHs~  340 (630)
                      +.|||||+||              |++..+.+-.||....-.+|                         +-..+|+||..
T Consensus       230 l~FS~nGkyL--------------AsaSkD~Taiiw~v~~d~~~-------------------------kl~~tlvgh~~  270 (519)
T KOG0293|consen  230 LQFSHNGKYL--------------ASASKDSTAIIWIVVYDVHF-------------------------KLKKTLVGHSQ  270 (519)
T ss_pred             EEEcCCCeeE--------------eeccCCceEEEEEEecCcce-------------------------eeeeeeecccC
Confidence            6899999999              55556667777765322111                         11378999999


Q ss_pred             ceeEEEeec---ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCC-----C-----ccc
Q 006825          341 IVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERD-----T-----SSE  407 (630)
Q Consensus       341 ~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~d-----t-----~s~  407 (630)
                      .|.-++|+|   +|++.+.|..++ +||+.||...+....+|.-.+.++||-|||..+++|+-|+.     .     ..-
T Consensus       271 ~V~yi~wSPDdryLlaCg~~e~~~-lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~W  349 (519)
T KOG0293|consen  271 PVSYIMWSPDDRYLLACGFDEVLS-LWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGNW  349 (519)
T ss_pred             ceEEEEECCCCCeEEecCchHhee-eccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcchhhcc
Confidence            999999999   899999999999 99999999999998888899999999999999999999871     1     112


Q ss_pred             cCC-cceEEEeecCCCe--EEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEE
Q 006825          408 KGG-RRSSSATDDSQDV--SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQ  484 (630)
Q Consensus       408 ~gh-~~~Vsa~~~s~d~--l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWD  484 (630)
                      +|- .-.|..++.+.|+  ++....|.+|++|+..+..-      .-+..-..+|+++.+|.||+++.+--.+..|++||
T Consensus       350 ~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~d------r~lise~~~its~~iS~d~k~~LvnL~~qei~LWD  423 (519)
T KOG0293|consen  350 EGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVD------RGLISEEQPITSFSISKDGKLALVNLQDQEIHLWD  423 (519)
T ss_pred             cccccceeEEEEEcCCCcEEEEEecccceeeechhhhhh------hccccccCceeEEEEcCCCcEEEEEcccCeeEEee
Confidence            221 1357888888888  77778999999999866532      11334557899999999999999999999999999


Q ss_pred             CcCCceeeeeecccccCcccceEEE--EEC-CCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeC-CCCce
Q 006825          485 VVESERKGELLEKQEDGHLNMLLLA--NGS-PEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPI  560 (630)
Q Consensus       485 l~tg~~~~~l~~~~~~gh~~~V~sv--afS-pdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l  560 (630)
                      ++....++.     +.||...-+.+  +|- .+..++++|+.|+.|                       +||+. +|+++
T Consensus       424 l~e~~lv~k-----Y~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kv-----------------------yIWhr~sgkll  475 (519)
T KOG0293|consen  424 LEENKLVRK-----YFGHKQGHFIIRSCFGGGNDKFIASGSEDSKV-----------------------YIWHRISGKLL  475 (519)
T ss_pred             cchhhHHHH-----hhcccccceEEEeccCCCCcceEEecCCCceE-----------------------EEEEccCCcee
Confidence            997766666     47777654433  333 345899999999999                       88887 89999


Q ss_pred             EEeccCCCCEEEEEEcCC--CeEEEEECCCcEEEEeCCC
Q 006825          561 CSFQGHLDDVLDLSWSKS--QHLLSSSMDKTVRLWHLSS  597 (630)
Q Consensus       561 ~tL~GHs~~V~sLafSPd--~~LaSgS~DgtVrIWDl~t  597 (630)
                      .+|.||...|++|+|+|.  .++||||.|||||||-...
T Consensus       476 ~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~  514 (519)
T KOG0293|consen  476 AVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSD  514 (519)
T ss_pred             EeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCCc
Confidence            999999999999999996  8999999999999997653

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.94  E-value=3.4e-26  Score=226.01  Aligned_cols=249  Identities=18%  Similarity=0.185  Sum_probs=209.3

Q ss_pred             eecCCCceeEEEEcCCCceEeeecceeeecCccceeEEEeec---ceEeecCCCccEecccCCCCceeEEecCCccCCEE
Q 006825          308 EIQEDGTWKKVKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIR  384 (630)
Q Consensus       308 e~~~dg~~~~l~dv~TG~~lt~eef~~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~  384 (630)
                      ....||. -|||.-.||.++     .++.||.+.|+......   ..|+++.|-|.+ +||.-||..++.+.  |..-|+
T Consensus        34 sa~kd~~-pmlr~g~tgdwi-----gtfeghkgavw~~~l~~na~~aasaaadftak-vw~a~tgdelhsf~--hkhivk  104 (334)
T KOG0278|consen   34 SASKDGK-PMLRNGDTGDWI-----GTFEGHKGAVWSATLNKNATRAASAAADFTAK-VWDAVTGDELHSFE--HKHIVK  104 (334)
T ss_pred             EeccCCC-chhccCCCCCcE-----EeeeccCcceeeeecCchhhhhhhhcccchhh-hhhhhhhhhhhhhh--hhheee
Confidence            3344554 568888999999     99999999999987765   689999999999 99999999999986  788899


Q ss_pred             EEEEcCCCCeEEeecCCC-----C-------CccccCCcceEEEeecCCCe--EEEecCCcEEEEEeCCCCcccceeeee
Q 006825          385 TVASSVTGHKERRSSDER-----D-------TSSEKGGRRSSSATDDSQDV--SFHGQERVRVRQYGKSCKDLTALYKCQ  450 (630)
Q Consensus       385 sVAfSpdG~~lasgS~D~-----d-------t~s~~gh~~~Vsa~~~s~d~--l~Sgs~Dg~VriWd~~~~el~~~~~v~  450 (630)
                      +|||+.|.++|.+|+.++     +       .....+|.+.|..+-|...-  +++...|++||+||..++.     .++
T Consensus       105 ~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt-----~v~  179 (334)
T KOG0278|consen  105 AVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGT-----EVQ  179 (334)
T ss_pred             eEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCc-----EEE
Confidence            999999999999999998     1       12267888888887776543  7888999999999998875     355


Q ss_pred             EecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeee
Q 006825          451 EIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKK  530 (630)
Q Consensus       451 tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~  530 (630)
                      +|. -..+|+++.+++||++|.++ .-+.|+.||..+...++.      ......|.+..++|+..++++|+.|..+   
T Consensus       180 sL~-~~s~VtSlEvs~dG~ilTia-~gssV~Fwdaksf~~lKs------~k~P~nV~SASL~P~k~~fVaGged~~~---  248 (334)
T KOG0278|consen  180 SLE-FNSPVTSLEVSQDGRILTIA-YGSSVKFWDAKSFGLLKS------YKMPCNVESASLHPKKEFFVAGGEDFKV---  248 (334)
T ss_pred             EEe-cCCCCcceeeccCCCEEEEe-cCceeEEeccccccceee------ccCccccccccccCCCceEEecCcceEE---
Confidence            654 45689999999999977664 457899999988877665      3344678899999999999999999988   


Q ss_pred             cccccccccccccCccccccEEEeC-CCCceEEe-ccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCCCcEE
Q 006825          531 RRGRSINRKSLSLDHMVVPETVFAL-SDKPICSF-QGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCL  601 (630)
Q Consensus       531 ~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL-~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg~~l  601 (630)
                                          ..||. +|+.+..+ +||-++|.||.|+|+ ...++||.||+||||.+..++..
T Consensus       249 --------------------~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~~  302 (334)
T KOG0278|consen  249 --------------------YKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGKTY  302 (334)
T ss_pred             --------------------EEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCCch
Confidence                                67777 78888876 999999999999999 88999999999999998776543

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=99.94  E-value=2.2e-25  Score=225.12  Aligned_cols=231  Identities=21%  Similarity=0.255  Sum_probs=193.8

Q ss_pred             ceeeecCccceeEEEeec---ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCC-eEEeecCCC-----
Q 006825          332 FEMCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGH-KERRSSDER-----  402 (630)
Q Consensus       332 f~~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~-~lasgS~D~-----  402 (630)
                      |-++.||+++|..|-|..   .++|.+.|++++ .||+++|++.++++ +|.+-|++++-+.-|. ++.++++|+     
T Consensus        83 ~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~-~wD~~tG~~~rk~k-~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~  160 (338)
T KOG0265|consen   83 FWVLKGHSGAVMELHGMRDGSHILSCGTDKTVR-GWDAETGKRIRKHK-GHTSFVNSLDPSRRGPQLVCSGSDDGTLKLW  160 (338)
T ss_pred             eeeeccccceeEeeeeccCCCEEEEecCCceEE-EEecccceeeehhc-cccceeeecCccccCCeEEEecCCCceEEEE
Confidence            456779999999999988   799999999999 99999999999999 9999999999666665 566778887     


Q ss_pred             CCc-----cccCCcceEEEeecCCCe--EEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEe
Q 006825          403 DTS-----SEKGGRRSSSATDDSQDV--SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAG  475 (630)
Q Consensus       403 dt~-----s~~gh~~~Vsa~~~s~d~--l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS  475 (630)
                      |..     +....+..++++.|.+..  +++|+-|..|++||+...+     ..+++.||.++|+.|..+|+|.+|.|-+
T Consensus       161 D~R~k~~~~t~~~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d-----~~~~lsGh~DtIt~lsls~~gs~llsns  235 (338)
T KOG0265|consen  161 DIRKKEAIKTFENKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKND-----GLYTLSGHADTITGLSLSRYGSFLLSNS  235 (338)
T ss_pred             eecccchhhccccceeEEEEEecccccceeeccccCceeeeccccCc-----ceEEeecccCceeeEEeccCCCcccccc
Confidence            222     133446678888888777  9999999999999987665     4788999999999999999999999999


Q ss_pred             CCCcEEEEECcCCceeeeeecccccCcc----cceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccE
Q 006825          476 EDCVIHVWQVVESERKGELLEKQEDGHL----NMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPET  551 (630)
Q Consensus       476 ~DgtIrVWDl~tg~~~~~l~~~~~~gh~----~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~  551 (630)
                      .|.+|++||++........+ ..+.+|.    .....++|+|+++.+..++.|..+                       .
T Consensus       236 Md~tvrvwd~rp~~p~~R~v-~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~v-----------------------y  291 (338)
T KOG0265|consen  236 MDNTVRVWDVRPFAPSQRCV-KIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFV-----------------------Y  291 (338)
T ss_pred             ccceEEEEEecccCCCCceE-EEeecchhhhhhhcceeeccCCCCccccccccceE-----------------------E
Confidence            99999999997543222211 1134443    345688999999999999999999                       8


Q ss_pred             EEeCCC-CceEEeccCCCCEEEEEEcCC-CeEEEEECCCcEEEE
Q 006825          552 VFALSD-KPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLW  593 (630)
Q Consensus       552 Vwdlsg-k~l~tL~GHs~~V~sLafSPd-~~LaSgS~DgtVrIW  593 (630)
                      +|+.+. ..+..|.||.+.|++++|+|. .+|++++.|++|.+=
T Consensus       292 vwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~lg  335 (338)
T KOG0265|consen  292 VWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYLG  335 (338)
T ss_pred             EeecccccEEEEcCCcceeEEEeeecCCCcEEEEeccCceeEee
Confidence            999854 788999999999999999999 999999999999873

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.94  E-value=2.9e-25  Score=248.92  Aligned_cols=233  Identities=21%  Similarity=0.255  Sum_probs=203.7

Q ss_pred             eEEEEcCCCceEeeeccee-eecCccceeEEEeec---ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCC
Q 006825          316 KKVKEVGTGRQLTIEEFEM-CVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVT  391 (630)
Q Consensus       316 ~~l~dv~TG~~lt~eef~~-l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpd  391 (630)
                      .++|+..+|..+     .. |.||.+.|+.++|..   .|++||.|+|+| +||..+|++.+.+. ||...|+++..-+ 
T Consensus       230 l~~~~~~~~~~i-----~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~r-vWd~~sg~C~~~l~-gh~stv~~~~~~~-  301 (537)
T KOG0274|consen  230 LHLWDLNNGYLI-----LTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTER-VWDCSTGECTHSLQ-GHTSSVRCLTIDP-  301 (537)
T ss_pred             eEEeecccceEE-----EeeccCCCCCceeEEEecCCCEEEEEecCCcEE-eEecCCCcEEEEec-CCCceEEEEEccC-
Confidence            479999999998     66 999999999999984   899999999999 99999999999999 9999998776543 


Q ss_pred             CCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEE
Q 006825          392 GHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYL  471 (630)
Q Consensus       392 G~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~L  471 (630)
                                                    ..+++|+.|.+|++|++.++.     +++++.||+++|++|.++  +.+|
T Consensus       302 ------------------------------~~~~sgs~D~tVkVW~v~n~~-----~l~l~~~h~~~V~~v~~~--~~~l  344 (537)
T KOG0274|consen  302 ------------------------------FLLVSGSRDNTVKVWDVTNGA-----CLNLLRGHTGPVNCVQLD--EPLL  344 (537)
T ss_pred             ------------------------------ceEeeccCCceEEEEeccCcc-----eEEEeccccccEEEEEec--CCEE
Confidence                                          234668889999999998664     688899999999999996  8899


Q ss_pred             EEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccE
Q 006825          472 ASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPET  551 (630)
Q Consensus       472 ASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~  551 (630)
                      ++|+.|++|+||++.+++++..+     .+|...|.++.+.+. ..+++|+.|++|                       +
T Consensus       345 vsgs~d~~v~VW~~~~~~cl~sl-----~gH~~~V~sl~~~~~-~~~~Sgs~D~~I-----------------------k  395 (537)
T KOG0274|consen  345 VSGSYDGTVKVWDPRTGKCLKSL-----SGHTGRVYSLIVDSE-NRLLSGSLDTTI-----------------------K  395 (537)
T ss_pred             EEEecCceEEEEEhhhceeeeee-----cCCcceEEEEEecCc-ceEEeeeeccce-----------------------E
Confidence            99999999999999999999985     899999999988766 889999999999                       8


Q ss_pred             EEeC-CC-CceEEeccCCCCEEEEEEcCCCeEEEEECCCcEEEEeCCCCcEEEEEe--cCCceEEEEcCCCcEEEE
Q 006825          552 VFAL-SD-KPICSFQGHLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFS--HSDYDISLVDRLMLRFAY  623 (630)
Q Consensus       552 Vwdl-sg-k~l~tL~GHs~~V~sLafSPd~~LaSgS~DgtVrIWDl~tg~~l~t~~--H~~~V~sVas~~~~~lAs  623 (630)
                      +|++ +. +++.+|.+|..-|..+.+.. ++|++++.|++|++||..+++|++++.  |...|++++......+++
T Consensus       396 vWdl~~~~~c~~tl~~h~~~v~~l~~~~-~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~~~~il~s  470 (537)
T KOG0274|consen  396 VWDLRTKRKCIHTLQGHTSLVSSLLLRD-NFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALGKEEILCS  470 (537)
T ss_pred             eecCCchhhhhhhhcCCccccccccccc-ceeEeccccccEEEeecccCceeeeeccCCcccEEEeecCcceEEEE
Confidence            8888 44 69999999999998877644 899999999999999999999999998  568899888433333333

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.94  E-value=1.6e-24  Score=255.49  Aligned_cols=260  Identities=13%  Similarity=0.168  Sum_probs=201.0

Q ss_pred             ceeecCCCCcccCCCccccccCCCCCcccccccEEEEECCC------------------------------CcEEEEeee
Q 006825          260 SMSINGNGNYIGNSGEVVEDFDGNGTAGVAEQGCLIKNLDN------------------------------GKEFVVNEI  309 (630)
Q Consensus       260 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~Ldd------------------------------G~~~~v~e~  309 (630)
                      ++.++|||+++              +++..++.++||++..                              +..++.  .
T Consensus       488 ~i~fs~dg~~l--------------atgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~las--~  551 (793)
T PLN00181        488 AIGFDRDGEFF--------------ATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQVAS--S  551 (793)
T ss_pred             EEEECCCCCEE--------------EEEeCCCEEEEEECCcccccccccccceEEecccCceeeEEeccCCCCEEEE--E
Confidence            57899999999              4555666777777532                              222222  2


Q ss_pred             cCCCceeEEEEcCCCceEeeecceeeecCccceeEEEeec----ceEeecCCCccEecccCCCCceeEEecCCccCCEEE
Q 006825          310 QEDGTWKKVKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQ----NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRT  385 (630)
Q Consensus       310 ~~dg~~~~l~dv~TG~~lt~eef~~l~GHs~~V~~Lafs~----~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~s  385 (630)
                      +.||. .++||+.+++.+     ..+.+|...|++|+|+|    .|++|+.|++++ +||+.++..+.++. .| ..|.+
T Consensus       552 ~~Dg~-v~lWd~~~~~~~-----~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~-iWd~~~~~~~~~~~-~~-~~v~~  622 (793)
T PLN00181        552 NFEGV-VQVWDVARSQLV-----TEMKEHEKRVWSIDYSSADPTLLASGSDDGSVK-LWSINQGVSIGTIK-TK-ANICC  622 (793)
T ss_pred             eCCCe-EEEEECCCCeEE-----EEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEE-EEECCCCcEEEEEe-cC-CCeEE
Confidence            23554 679999999887     78899999999999986    699999999999 99999999998887 44 67889


Q ss_pred             EEEcC-CCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEE
Q 006825          386 VASSV-TGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKF  464 (630)
Q Consensus       386 VAfSp-dG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaF  464 (630)
                      ++|++ +|+++                             ++|+.|+.|++||+.....    .+..+.+|...|.+++|
T Consensus       623 v~~~~~~g~~l-----------------------------atgs~dg~I~iwD~~~~~~----~~~~~~~h~~~V~~v~f  669 (793)
T PLN00181        623 VQFPSESGRSL-----------------------------AFGSADHKVYYYDLRNPKL----PLCTMIGHSKTVSYVRF  669 (793)
T ss_pred             EEEeCCCCCEE-----------------------------EEEeCCCeEEEEECCCCCc----cceEecCCCCCEEEEEE
Confidence            99954 56555                             5667788999999875432    34678899999999999


Q ss_pred             ccCCCEEEEEeCCCcEEEEECcCC------ceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccc
Q 006825          465 SLDGRYLASAGEDCVIHVWQVVES------ERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINR  538 (630)
Q Consensus       465 SpDG~~LASgS~DgtIrVWDl~tg------~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~  538 (630)
                      . ++.+|+|++.|++|+|||+..+      ..+..     +.+|...+..++|+|++.+|++|+.|+.|.+|+.......
T Consensus       670 ~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~-----~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~  743 (793)
T PLN00181        670 V-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHS-----FMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPV  743 (793)
T ss_pred             e-CCCEEEEEECCCEEEEEeCCCCccccCCcceEE-----EcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCce
Confidence            7 7889999999999999999753      23333     4789999999999999999999999999988875432211


Q ss_pred             cccccCccccccEEEeC-CCCce--EEeccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeC
Q 006825          539 KSLSLDHMVVPETVFAL-SDKPI--CSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHL  595 (630)
Q Consensus       539 ~s~s~d~~i~~~~Vwdl-sgk~l--~tL~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl  595 (630)
                      .            .|.. ....+  ..+..|...|.+++|+|+ .+|++|+.||+|+||++
T Consensus       744 ~------------s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~  792 (793)
T PLN00181        744 L------------SYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILEM  792 (793)
T ss_pred             E------------EEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence            1            1111 00111  123457778999999999 89999999999999997

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=99.94  E-value=1.3e-25  Score=230.78  Aligned_cols=198  Identities=20%  Similarity=0.266  Sum_probs=181.3

Q ss_pred             ceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeee
Q 006825          370 GMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKC  449 (630)
Q Consensus       370 ~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v  449 (630)
                      +..+.++ ||++.|+|||+-|...++                             ++|+.|++|+|||+.++++     .
T Consensus       142 Kl~rVi~-gHlgWVr~vavdP~n~wf-----------------------------~tgs~DrtikIwDlatg~L-----k  186 (460)
T KOG0285|consen  142 KLYRVIS-GHLGWVRSVAVDPGNEWF-----------------------------ATGSADRTIKIWDLATGQL-----K  186 (460)
T ss_pred             eehhhhh-hccceEEEEeeCCCceeE-----------------------------EecCCCceeEEEEcccCeE-----E
Confidence            3445556 999999999999976666                             5567778999999999864     6


Q ss_pred             eEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeee
Q 006825          450 QEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEK  529 (630)
Q Consensus       450 ~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i  529 (630)
                      .+|.||...|..|+||+--.||+++++|+.||.||++..+.++.     +.||...|.+++.+|.-..|++++.|.++  
T Consensus       187 ltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR~-----YhGHlS~V~~L~lhPTldvl~t~grDst~--  259 (460)
T KOG0285|consen  187 LTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIRH-----YHGHLSGVYCLDLHPTLDVLVTGGRDSTI--  259 (460)
T ss_pred             EeecchhheeeeeeecccCceEEEecCCCeeEEEechhhhhHHH-----hccccceeEEEeccccceeEEecCCcceE--
Confidence            78999999999999999999999999999999999999888877     58999999999999999999999999999  


Q ss_pred             ecccccccccccccCccccccEEEeC-CCCceEEeccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCCCcEEEEEe-c
Q 006825          530 KRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-H  606 (630)
Q Consensus       530 ~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg~~l~t~~-H  606 (630)
                                           +|||+ +...+.+|.||...|..+.+.|- ..++|||+|++||+||+..|+-..++. |
T Consensus       260 ---------------------RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~h  318 (460)
T KOG0285|consen  260 ---------------------RVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHH  318 (460)
T ss_pred             ---------------------EEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCceEEEeeeccCceeEeeecc
Confidence                                 89998 77899999999999999999987 899999999999999999999988888 9


Q ss_pred             CCceEEEE-cCCCcEEEEecceecC
Q 006825          607 SDYDISLV-DRLMLRFAYGAFLNVK  630 (630)
Q Consensus       607 ~~~V~sVa-s~~~~~lAsgs~~nIK  630 (630)
                      .-.|.|++ +|....+|+++.++||
T Consensus       319 kksvral~lhP~e~~fASas~dnik  343 (460)
T KOG0285|consen  319 KKSVRALCLHPKENLFASASPDNIK  343 (460)
T ss_pred             cceeeEEecCCchhhhhccCCccce
Confidence            99999999 9999999999999986

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=99.94  E-value=8.1e-25  Score=221.04  Aligned_cols=265  Identities=17%  Similarity=0.182  Sum_probs=224.6

Q ss_pred             ceeeecCccceeEEEeec---ceEeecCCCccEecccCCC-CceeEEecCCccCCEEEEEEcCCCCeEEeecCCC-----
Q 006825          332 FEMCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSG-GGMKSKKKGSWFKSIRTVASSVTGHKERRSSDER-----  402 (630)
Q Consensus       332 f~~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~t-G~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~-----  402 (630)
                      .+.+.||.+.|..++|.|   .+|||+.|..|- +|++.. -+-..+++ ||.+.|..|-|.+||..+.+.+.|+     
T Consensus        40 ~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~-LWnv~gdceN~~~lk-gHsgAVM~l~~~~d~s~i~S~gtDk~v~~w  117 (338)
T KOG0265|consen   40 IMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIV-LWNVYGDCENFWVLK-GHSGAVMELHGMRDGSHILSCGTDKTVRGW  117 (338)
T ss_pred             hhhcCCCcceEEEEEECCCCCeEeecCCcceEE-EEeccccccceeeec-cccceeEeeeeccCCCEEEEecCCceEEEE
Confidence            477899999999999999   899999999999 999754 33455777 9999999999999999999999998     


Q ss_pred             --CC----ccccCCcceEEEeecCCCe---EEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEE
Q 006825          403 --DT----SSEKGGRRSSSATDDSQDV---SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLAS  473 (630)
Q Consensus       403 --dt----~s~~gh~~~Vsa~~~s~d~---l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LAS  473 (630)
                        ++    ...++|...|++++...-+   +.+|+.|+++++||++.++.     ++++. .+-.++++.|..++..+.+
T Consensus       118 D~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~-----~~t~~-~kyqltAv~f~d~s~qv~s  191 (338)
T KOG0265|consen  118 DAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEA-----IKTFE-NKYQLTAVGFKDTSDQVIS  191 (338)
T ss_pred             ecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccch-----hhccc-cceeEEEEEecccccceee
Confidence              33    3389999999998855444   88999999999999988763     33332 4567999999999999999


Q ss_pred             EeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEE
Q 006825          474 AGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVF  553 (630)
Q Consensus       474 gS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vw  553 (630)
                      |+-|+.|++||++.......+     .||...|..+..+|+|.++.+-+.|.++++|+.                  +-|
T Consensus       192 ggIdn~ikvWd~r~~d~~~~l-----sGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~------------------rp~  248 (338)
T KOG0265|consen  192 GGIDNDIKVWDLRKNDGLYTL-----SGHADTITGLSLSRYGSFLLSNSMDNTVRVWDV------------------RPF  248 (338)
T ss_pred             ccccCceeeeccccCcceEEe-----ecccCceeeEEeccCCCccccccccceEEEEEe------------------ccc
Confidence            999999999999998888875     999999999999999999999999999944443                  122


Q ss_pred             eCCCCceEEeccCCCC----EEEEEEcCC-CeEEEEECCCcEEEEeCCCCcEEEEEe-cCCceEEEE-cCCCcEEEEecc
Q 006825          554 ALSDKPICSFQGHLDD----VLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYDISLV-DRLMLRFAYGAF  626 (630)
Q Consensus       554 dlsgk~l~tL~GHs~~----V~sLafSPd-~~LaSgS~DgtVrIWDl~tg~~l~t~~-H~~~V~sVa-s~~~~~lAsgs~  626 (630)
                      .....++..|+||.-.    .+.++|+|+ ..+..|+.|+.|++||..+..+++.++ |.+.|.+++ .|..-.+.+.+.
T Consensus       249 ~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~s  328 (338)
T KOG0265|consen  249 APSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSS  328 (338)
T ss_pred             CCCCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEecc
Confidence            2244668889887533    467899999 889999999999999999999999998 999999999 887777777665


Q ss_pred             e
Q 006825          627 L  627 (630)
Q Consensus       627 ~  627 (630)
                      +
T Consensus       329 d  329 (338)
T KOG0265|consen  329 D  329 (338)
T ss_pred             C
Confidence            4

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=99.94  E-value=4.5e-26  Score=237.38  Aligned_cols=253  Identities=16%  Similarity=0.168  Sum_probs=221.0

Q ss_pred             ceeEEEeec---ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCC----------CCccc
Q 006825          341 IVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDER----------DTSSE  407 (630)
Q Consensus       341 ~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~----------dt~s~  407 (630)
                      .|..|.+.|   .|++|+.-+-.- +|+..+-.-...+. .|...|+++.++++|.++++|..+.          .....
T Consensus        98 ~V~~v~WtPeGRRLltgs~SGEFt-LWNg~~fnFEtilQ-aHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk~~  175 (464)
T KOG0284|consen   98 PVNVVRWTPEGRRLLTGSQSGEFT-LWNGTSFNFETILQ-AHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNVKII  175 (464)
T ss_pred             ceeeEEEcCCCceeEeecccccEE-EecCceeeHHHHhh-hhcccceeEEEccCCCEEEEcCCCceEEecccchhhhHHh
Confidence            356666766   578999888888 99985544444455 8999999999999999999998887          12234


Q ss_pred             cCCc-ceEEEeecCCCe--EEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEE
Q 006825          408 KGGR-RSSSATDDSQDV--SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQ  484 (630)
Q Consensus       408 ~gh~-~~Vsa~~~s~d~--l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWD  484 (630)
                      ..|. -.|.+++|++.-  ++++++|++|+|||......     -..|.||.--|.+++|+|.-.+|||||.|..||+||
T Consensus       176 ~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~ke-----e~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWD  250 (464)
T KOG0284|consen  176 QAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKE-----ERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWD  250 (464)
T ss_pred             hHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCch-----hheeccCCCCcceeccCCccceeEEccCCceeEeec
Confidence            4554 899999999755  99999999999999865532     345799999999999999999999999999999999


Q ss_pred             CcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeC-CCCceEEe
Q 006825          485 VVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSF  563 (630)
Q Consensus       485 l~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL  563 (630)
                      .+++.++..+     .+|...|..+.|.|++.+|++++.|..+                       +++|+ +-+.++++
T Consensus       251 prSg~cl~tl-----h~HKntVl~~~f~~n~N~Llt~skD~~~-----------------------kv~DiR~mkEl~~~  302 (464)
T KOG0284|consen  251 PRSGSCLATL-----HGHKNTVLAVKFNPNGNWLLTGSKDQSC-----------------------KVFDIRTMKELFTY  302 (464)
T ss_pred             CCCcchhhhh-----hhccceEEEEEEcCCCCeeEEccCCceE-----------------------EEEehhHhHHHHHh
Confidence            9999999885     8999999999999999999999999999                       88888 47889999


Q ss_pred             ccCCCCEEEEEEcCC--CeEEEEECCCcEEEEeCCCCcEEEEEe--cCCceEEEE-cCCCcEEEEeccee
Q 006825          564 QGHLDDVLDLSWSKS--QHLLSSSMDKTVRLWHLSSKTCLKIFS--HSDYDISLV-DRLMLRFAYGAFLN  628 (630)
Q Consensus       564 ~GHs~~V~sLafSPd--~~LaSgS~DgtVrIWDl~tg~~l~t~~--H~~~V~sVa-s~~~~~lAsgs~~n  628 (630)
                      +||...|+++.|+|-  ++|.+|+.||.|..|.+...+++..+.  |...|++++ +|.+-+|++|+.++
T Consensus       303 r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~  372 (464)
T KOG0284|consen  303 RGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDR  372 (464)
T ss_pred             hcchhhheeeccccccccceeeccCCCceEEEeccccccccCCCcccccceeeeeccccceeEeecCCCc
Confidence            999999999999996  899999999999999999888888887  999999999 99999999998763

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.93  E-value=9e-24  Score=232.97  Aligned_cols=285  Identities=16%  Similarity=0.173  Sum_probs=216.0

Q ss_pred             eeecCCCceeEEEEcCCCceEeee---c--ceeeecCccceeEEEeec---ceEeecCCCccEecccCCCCceeEEecCC
Q 006825          307 NEIQEDGTWKKVKEVGTGRQLTIE---E--FEMCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKKKGS  378 (630)
Q Consensus       307 ~e~~~dg~~~~l~dv~TG~~lt~e---e--f~~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~lk~g  378 (630)
                      ...+.-|.|..+--...|+.|-.|   |  +....||...+.+|+.+|   .+|+|+.|+.|+ |||..+|.|..++. .
T Consensus       313 ~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVK-vWn~~SgfC~vTFt-e  390 (893)
T KOG0291|consen  313 VSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVK-VWNTQSGFCFVTFT-E  390 (893)
T ss_pred             EEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEE-EEeccCceEEEEec-c
Confidence            334455777777666777776544   1  245679999999999999   899999999999 99999999999999 9


Q ss_pred             ccCCEEEEEEcCCCCeEEeecCCC-----CC------ccccCC-cceEEEeecC--CCeEEEecCC-cEEEEEeCCCCcc
Q 006825          379 WFKSIRTVASSVTGHKERRSSDER-----DT------SSEKGG-RRSSSATDDS--QDVSFHGQER-VRVRQYGKSCKDL  443 (630)
Q Consensus       379 H~~~V~sVAfSpdG~~lasgS~D~-----dt------~s~~gh-~~~Vsa~~~s--~d~l~Sgs~D-g~VriWd~~~~el  443 (630)
                      |+..|.+|.|+..|+-+.+.|-|+     |.      .++... ....+|++..  .+.++.|+.| ..|.+|+++++++
T Consensus       391 Hts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGql  470 (893)
T KOG0291|consen  391 HTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQL  470 (893)
T ss_pred             CCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCee
Confidence            999999999999999999999887     11      112222 2233444444  4446777766 5799999999864


Q ss_pred             cceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeC
Q 006825          444 TALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHL  523 (630)
Q Consensus       444 ~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~  523 (630)
                           +-.|.||.++|.+++|+|+|..|||+|+|+|||+||+-......+.     ..+...+..++|.|+|+.++.+..
T Consensus       471 -----lDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEt-----l~i~sdvl~vsfrPdG~elaVaTl  540 (893)
T KOG0291|consen  471 -----LDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVET-----LEIRSDVLAVSFRPDGKELAVATL  540 (893)
T ss_pred             -----eehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCceeee-----EeeccceeEEEEcCCCCeEEEEEe
Confidence                 6789999999999999999999999999999999999765433332     345577899999999999999999


Q ss_pred             CCeeeeecccccccccccccCccccccEEEeCCCCceEEeccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCCCcEEE
Q 006825          524 DNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLK  602 (630)
Q Consensus       524 Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg~~l~  602 (630)
                      ||.|.+|+........++.--..+...+..  +......-......++.|++++| .++++|+..+.|+|+++.++-.++
T Consensus       541 dgqItf~d~~~~~q~~~IdgrkD~~~gR~~--~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~~vllk  618 (893)
T KOG0291|consen  541 DGQITFFDIKEAVQVGSIDGRKDLSGGRKE--TDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIYDVPEGVLLK  618 (893)
T ss_pred             cceEEEEEhhhceeeccccchhhccccccc--cceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEECchhheee
Confidence            999988887654433222211111111100  00111112234467899999999 999999999999999999999998


Q ss_pred             EEe
Q 006825          603 IFS  605 (630)
Q Consensus       603 t~~  605 (630)
                      .|.
T Consensus       619 kfq  621 (893)
T KOG0291|consen  619 KFQ  621 (893)
T ss_pred             eEE
Confidence            886

>PTZ00421 coronin; Provisional

Probab=99.93  E-value=2.2e-23  Score=232.67  Aligned_cols=232  Identities=12%  Similarity=0.131  Sum_probs=178.6

Q ss_pred             EEEcCCCceEeeecceeeecCccceeEEEeec----ceEeecCCCccEecccCCCCc-------eeEEecCCccCCEEEE
Q 006825          318 VKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQ----NVEEGNKDSFDLNNNGSSGGG-------MKSKKKGSWFKSIRTV  386 (630)
Q Consensus       318 l~dv~TG~~lt~eef~~l~GHs~~V~~Lafs~----~laSgS~D~tvr~vWD~~tG~-------~~~~lk~gH~~~V~sV  386 (630)
                      ++...+|+...  ....+.||+..|..|+|+|    .|++||.|++|+ +||+.++.       .+.++. +|...|.+|
T Consensus        56 ~~~~~~G~~~~--~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIk-IWdi~~~~~~~~~~~~l~~L~-gH~~~V~~l  131 (493)
T PTZ00421         56 LKHTDYGKLAS--NPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTIM-GWGIPEEGLTQNISDPIVHLQ-GHTKKVGIV  131 (493)
T ss_pred             eeccccccCCC--CCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEE-EEecCCCccccccCcceEEec-CCCCcEEEE
Confidence            44444565441  1235789999999999998    699999999999 99997753       466777 899999999


Q ss_pred             EEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEcc
Q 006825          387 ASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSL  466 (630)
Q Consensus       387 AfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSp  466 (630)
                      +|+|++.                            ..+++++.|++|++||+.+++     .+..+.+|...|++|+|+|
T Consensus       132 ~f~P~~~----------------------------~iLaSgs~DgtVrIWDl~tg~-----~~~~l~~h~~~V~sla~sp  178 (493)
T PTZ00421        132 SFHPSAM----------------------------NVLASAGADMVVNVWDVERGK-----AVEVIKCHSDQITSLEWNL  178 (493)
T ss_pred             EeCcCCC----------------------------CEEEEEeCCCEEEEEECCCCe-----EEEEEcCCCCceEEEEEEC
Confidence            9999753                            224677888999999998764     4677899999999999999


Q ss_pred             CCCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccc-eEEEEECCCCCEEEEee----CCCeeeeeccccccccccc
Q 006825          467 DGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNM-LLLANGSPEPTSLSPKH----LDNHLEKKRRGRSINRKSL  541 (630)
Q Consensus       467 DG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~-V~svafSpdg~~lasgs----~Dg~I~i~~~~~~~~~~s~  541 (630)
                      +|.+|++++.|++|+|||+++++.+..+     .+|... +..+.|.+++..+++++    .|+.|              
T Consensus       179 dG~lLatgs~Dg~IrIwD~rsg~~v~tl-----~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~V--------------  239 (493)
T PTZ00421        179 DGSLLCTTSKDKKLNIIDPRDGTIVSSV-----EAHASAKSQRCLWAKRKDLIITLGCSKSQQRQI--------------  239 (493)
T ss_pred             CCCEEEEecCCCEEEEEECCCCcEEEEE-----ecCCCCcceEEEEcCCCCeEEEEecCCCCCCeE--------------
Confidence            9999999999999999999998877764     567654 34677888877777654    36777              


Q ss_pred             ccCccccccEEEeCC--CCceEEeccCC-CCEEEEEEcCC-CeEEEEE-CCCcEEEEeCCCCcEEEEEe--cCCceEEEE
Q 006825          542 SLDHMVVPETVFALS--DKPICSFQGHL-DDVLDLSWSKS-QHLLSSS-MDKTVRLWHLSSKTCLKIFS--HSDYDISLV  614 (630)
Q Consensus       542 s~d~~i~~~~Vwdls--gk~l~tL~GHs-~~V~sLafSPd-~~LaSgS-~DgtVrIWDl~tg~~l~t~~--H~~~V~sVa  614 (630)
                               ++|++.  .+++..+..|. ..+....|+++ ++|++++ .|++|++||+.+++++..+.  +...+..++
T Consensus       240 ---------klWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~~g~~  310 (493)
T PTZ00421        240 ---------MLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPHKGLC  310 (493)
T ss_pred             ---------EEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccCCCCCcceE
Confidence                     677762  34555444333 45666778999 8888877 59999999999999887665  444555554

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=99.93  E-value=3.2e-24  Score=226.79  Aligned_cols=265  Identities=17%  Similarity=0.183  Sum_probs=226.4

Q ss_pred             eecceeeecCccceeEEEeec----ceEeecCCCccEecccCCC----CceeEEec-----C----CccCCEEEEEEcCC
Q 006825          329 IEEFEMCVGHSPIVQELMRRQ----NVEEGNKDSFDLNNNGSSG----GGMKSKKK-----G----SWFKSIRTVASSVT  391 (630)
Q Consensus       329 ~eef~~l~GHs~~V~~Lafs~----~laSgS~D~tvr~vWD~~t----G~~~~~lk-----~----gH~~~V~sVAfSpd  391 (630)
                      +.++-++.+|...|..-++.|    .+++|+.|-+.| +|++..    +.....|+     .    .-.+-|++++|+-+
T Consensus       168 ~~~~~kvl~~~~~V~~~~WnP~~~~llasg~~~s~ar-i~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~  246 (524)
T KOG0273|consen  168 PSSKAKVLRHESEVFICAWNPLRDGLLASGSGDSTAR-IWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNND  246 (524)
T ss_pred             cccceeeccCCCceEEEecCchhhhhhhccCCcccee-eeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCC
Confidence            345555666999999999999    799999999999 998763    22211122     0    12357999999999


Q ss_pred             CCeEEeecCCCC----------CccccCCcceEEEeecCCCe--EEEecCCcEEEEEeCCCCcccceeeeeEecccCcCE
Q 006825          392 GHKERRSSDERD----------TSSEKGGRRSSSATDDSQDV--SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSI  459 (630)
Q Consensus       392 G~~lasgS~D~d----------t~s~~gh~~~Vsa~~~s~d~--l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V  459 (630)
                      |..||+|+.++.          +..+-.|+.+|.++.....+  +++++.|+++.+||..+++     ..+.+.-|..+-
T Consensus       247 G~~LatG~~~G~~riw~~~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~-----~~q~f~~~s~~~  321 (524)
T KOG0273|consen  247 GTLLATGSEDGEARIWNKDGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGT-----VKQQFEFHSAPA  321 (524)
T ss_pred             CCeEEEeecCcEEEEEecCchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCce-----EEEeeeeccCCc
Confidence            999999999982          23478899999999999999  9999999999999998775     356677788887


Q ss_pred             EEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeeccccccccc
Q 006825          460 WSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRK  539 (630)
Q Consensus       460 ~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~  539 (630)
                      ..|.|-.+. .+++++.|+.|+|+.+....++.++     .+|.+.|.++.|.|.+.+|++++.|+++            
T Consensus       322 lDVdW~~~~-~F~ts~td~~i~V~kv~~~~P~~t~-----~GH~g~V~alk~n~tg~LLaS~SdD~Tl------------  383 (524)
T KOG0273|consen  322 LDVDWQSND-EFATSSTDGCIHVCKVGEDRPVKTF-----IGHHGEVNALKWNPTGSLLASCSDDGTL------------  383 (524)
T ss_pred             cceEEecCc-eEeecCCCceEEEEEecCCCcceee-----ecccCceEEEEECCCCceEEEecCCCee------------
Confidence            788886544 5899999999999999888888874     7899999999999999999999999999            


Q ss_pred             ccccCccccccEEEeC-CCCceEEeccCCCCEEEEEEcCC----------CeEEEEECCCcEEEEeCCCCcEEEEEe-cC
Q 006825          540 SLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSWSKS----------QHLLSSSMDKTVRLWHLSSKTCLKIFS-HS  607 (630)
Q Consensus       540 s~s~d~~i~~~~Vwdl-sgk~l~tL~GHs~~V~sLafSPd----------~~LaSgS~DgtVrIWDl~tg~~l~t~~-H~  607 (630)
                                 +||.. .+.....|.+|...|..+.|+|+          ..|++++.|.+|++||+..+.|+++|. |.
T Consensus       384 -----------kiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~  452 (524)
T KOG0273|consen  384 -----------KIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQ  452 (524)
T ss_pred             -----------EeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCC
Confidence                       77876 67788899999999999999984          279999999999999999999999996 99


Q ss_pred             CceEEEE-cCCCcEEEEeccee
Q 006825          608 DYDISLV-DRLMLRFAYGAFLN  628 (630)
Q Consensus       608 ~~V~sVa-s~~~~~lAsgs~~n  628 (630)
                      .+|++|+ +|++.++|+|+.+.
T Consensus       453 ~pVysvafS~~g~ylAsGs~dg  474 (524)
T KOG0273|consen  453 EPVYSVAFSPNGRYLASGSLDG  474 (524)
T ss_pred             CceEEEEecCCCcEEEecCCCC
Confidence            9999999 99999999998763

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.92  E-value=5.2e-24  Score=238.91  Aligned_cols=244  Identities=19%  Similarity=0.266  Sum_probs=208.3

Q ss_pred             cccccccEEEEECCCCcEEEE-eeecCCCc-------------------eeEEEEcCCCceEeeecceeeecCccceeEE
Q 006825          286 AGVAEQGCLIKNLDNGKEFVV-NEIQEDGT-------------------WKKVKEVGTGRQLTIEEFEMCVGHSPIVQEL  345 (630)
Q Consensus       286 ~~~~~~~~~I~~LddG~~~~v-~e~~~dg~-------------------~~~l~dv~TG~~lt~eef~~l~GHs~~V~~L  345 (630)
                      ++..+.+..+|++.+|+...+ -+++.+|.                   +.++|+..||++.     ..+.||...|.++
T Consensus       223 ~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~-----~~l~gh~stv~~~  297 (537)
T KOG0274|consen  223 SGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECT-----HSLQGHTSSVRCL  297 (537)
T ss_pred             ecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEE-----EEecCCCceEEEE
Confidence            334555667888877776666 23222222                   6789999999999     9999999999999


Q ss_pred             Eeec-ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeE
Q 006825          346 MRRQ-NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVS  424 (630)
Q Consensus       346 afs~-~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l  424 (630)
                      ...+ .+++||.|.||+ +|++.+|..++++. ||...|++|.+.  +                             +.+
T Consensus       298 ~~~~~~~~sgs~D~tVk-VW~v~n~~~l~l~~-~h~~~V~~v~~~--~-----------------------------~~l  344 (537)
T KOG0274|consen  298 TIDPFLLVSGSRDNTVK-VWDVTNGACLNLLR-GHTGPVNCVQLD--E-----------------------------PLL  344 (537)
T ss_pred             EccCceEeeccCCceEE-EEeccCcceEEEec-cccccEEEEEec--C-----------------------------CEE
Confidence            9998 788899999999 99999999999999 799999988876  3                             345


Q ss_pred             EEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCC-ceeeeeecccccCcc
Q 006825          425 FHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVES-ERKGELLEKQEDGHL  503 (630)
Q Consensus       425 ~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg-~~~~~l~~~~~~gh~  503 (630)
                      ++|+.|++|++|+..+.+     ++.+|.||++.|+++.+... .++++|+.|++||+||+.+. +++..+     .+|.
T Consensus       345 vsgs~d~~v~VW~~~~~~-----cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl-----~~h~  413 (537)
T KOG0274|consen  345 VSGSYDGTVKVWDPRTGK-----CLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTL-----QGHT  413 (537)
T ss_pred             EEEecCceEEEEEhhhce-----eeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhh-----cCCc
Confidence            788899999999998654     78999999999999988554 89999999999999999999 788774     8888


Q ss_pred             cceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeC-CCCceEEecc-CCCCEEEEEEcCCCeE
Q 006825          504 NMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQG-HLDDVLDLSWSKSQHL  581 (630)
Q Consensus       504 ~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL~G-Hs~~V~sLafSPd~~L  581 (630)
                      ..+..+.+  .+++|++++.|++|                       ++|+. .+++++++++ |...|+.+++. +..+
T Consensus       414 ~~v~~l~~--~~~~Lvs~~aD~~I-----------------------k~WD~~~~~~~~~~~~~~~~~v~~l~~~-~~~i  467 (537)
T KOG0274|consen  414 SLVSSLLL--RDNFLVSSSADGTI-----------------------KLWDAEEGECLRTLEGRHVGGVSALALG-KEEI  467 (537)
T ss_pred             cccccccc--ccceeEeccccccE-----------------------EEeecccCceeeeeccCCcccEEEeecC-cceE
Confidence            88865554  57899999999999                       88888 8899999999 78999999987 4689


Q ss_pred             EEEECCCcEEEEeCCCCcEEEEE
Q 006825          582 LSSSMDKTVRLWHLSSKTCLKIF  604 (630)
Q Consensus       582 aSgS~DgtVrIWDl~tg~~l~t~  604 (630)
                      ++++.|+++++||++++++.+.+
T Consensus       468 l~s~~~~~~~l~dl~~~~~~~~l  490 (537)
T KOG0274|consen  468 LCSSDDGSVKLWDLRSGTLIRTL  490 (537)
T ss_pred             EEEecCCeeEEEecccCchhhhh
Confidence            99999999999999999998876

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.92  E-value=8.9e-24  Score=207.56  Aligned_cols=257  Identities=15%  Similarity=0.136  Sum_probs=220.8

Q ss_pred             cceeeecCccceeEEEeec---ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCC-----
Q 006825          331 EFEMCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDER-----  402 (630)
Q Consensus       331 ef~~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~-----  402 (630)
                      +...|.+|.++|.++.|.-   +.++.+.|+|+| +|+...|.++++.. ||...|+.+|.+.|...+++++.|+     
T Consensus         9 r~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvr-LWNp~rg~liktYs-ghG~EVlD~~~s~Dnskf~s~GgDk~v~vw   86 (307)
T KOG0316|consen    9 RLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVR-LWNPLRGALIKTYS-GHGHEVLDAALSSDNSKFASCGGDKAVQVW   86 (307)
T ss_pred             hceeecccccceEEEEEccCCCEEEEcCCCceEE-eecccccceeeeec-CCCceeeeccccccccccccCCCCceEEEE
Confidence            3467889999999999976   888999999999 99999999999999 9999999999999999999999998     


Q ss_pred             --CCcc----ccCCcceEEEeecCCCe--EEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEE
Q 006825          403 --DTSS----EKGGRRSSSATDDSQDV--SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASA  474 (630)
Q Consensus       403 --dt~s----~~gh~~~Vsa~~~s~d~--l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASg  474 (630)
                        ++++    +.||...|.++.|..+.  +++|+.|.+||+||.....+   .++|.|..-.+.|.+|..  .+..|++|
T Consensus        87 DV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~---ePiQildea~D~V~Si~v--~~heIvaG  161 (307)
T KOG0316|consen   87 DVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSF---EPIQILDEAKDGVSSIDV--AEHEIVAG  161 (307)
T ss_pred             EcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCC---CccchhhhhcCceeEEEe--cccEEEee
Confidence              3433    89999999999999876  89999999999999977654   468889999999999998  56789999


Q ss_pred             eCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEe
Q 006825          475 GEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFA  554 (630)
Q Consensus       475 S~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwd  554 (630)
                      |.||++|.||++.|.....       ....+|+++.|++++...+.++.|.++                       ++.+
T Consensus       162 S~DGtvRtydiR~G~l~sD-------y~g~pit~vs~s~d~nc~La~~l~stl-----------------------rLlD  211 (307)
T KOG0316|consen  162 SVDGTVRTYDIRKGTLSSD-------YFGHPITSVSFSKDGNCSLASSLDSTL-----------------------RLLD  211 (307)
T ss_pred             ccCCcEEEEEeecceeehh-------hcCCcceeEEecCCCCEEEEeecccee-----------------------eecc
Confidence            9999999999998875433       234679999999999999999999999                       5555


Q ss_pred             C-CCCceEEeccCCCCE--EEEEEcCC-CeEEEEECCCcEEEEeCCCCcEEEEEe-cCCc-eEEEE-cCCCcEEEEe
Q 006825          555 L-SDKPICSFQGHLDDV--LDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDY-DISLV-DRLMLRFAYG  624 (630)
Q Consensus       555 l-sgk~l~tL~GHs~~V--~sLafSPd-~~LaSgS~DgtVrIWDl~tg~~l~t~~-H~~~-V~sVa-s~~~~~lAsg  624 (630)
                      - +|++++.++||...=  +..+++.. ..+++||.||.|.+||+.....+..+. |... |+++. .|....+.++
T Consensus       212 k~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f~~A  288 (307)
T KOG0316|consen  212 KETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDDFITA  288 (307)
T ss_pred             cchhHHHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEeccceeeeeeccCCceeEEeeecccCccceeEe
Confidence            5 899999999998764  44566666 899999999999999999999999998 4444 67777 6665555444

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=99.92  E-value=8.1e-25  Score=228.05  Aligned_cols=264  Identities=15%  Similarity=0.207  Sum_probs=218.9

Q ss_pred             cccccEEEEECCCCcEEEEeeecCCCceeEEEEcCCCceEeeeccee-eecCccceeEEEeec---ceEeecCCCccEec
Q 006825          288 VAEQGCLIKNLDNGKEFVVNEIQEDGTWKKVKEVGTGRQLTIEEFEM-CVGHSPIVQELMRRQ---NVEEGNKDSFDLNN  363 (630)
Q Consensus       288 ~~~~~~~I~~LddG~~~~v~e~~~dg~~~~l~dv~TG~~lt~eef~~-l~GHs~~V~~Lafs~---~laSgS~D~tvr~v  363 (630)
                      .+..+..|+=..+|+++++.....+   ..||+..   ..   -|++ +..|-.+|+.+.+++   .++||+.++.|+ .
T Consensus        95 vkc~V~~v~WtPeGRRLltgs~SGE---FtLWNg~---~f---nFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iK-y  164 (464)
T KOG0284|consen   95 VKCPVNVVRWTPEGRRLLTGSQSGE---FTLWNGT---SF---NFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIK-Y  164 (464)
T ss_pred             cccceeeEEEcCCCceeEeeccccc---EEEecCc---ee---eHHHHhhhhcccceeEEEccCCCEEEEcCCCceEE-e
Confidence            4455677777899999999776222   4588762   22   2344 457999999999998   899999999999 9


Q ss_pred             ccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCC-----------CCccccCCcceEEEeecCCCe--EEEecCC
Q 006825          364 NGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDER-----------DTSSEKGGRRSSSATDDSQDV--SFHGQER  430 (630)
Q Consensus       364 WD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~-----------dt~s~~gh~~~Vsa~~~s~d~--l~Sgs~D  430 (630)
                      |+.+-.. ++.....|...|+++||||.-..+++.|+|.           +...+.||.-.|.+++..+..  +++|+.|
T Consensus       165 Wqpnmnn-Vk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskD  243 (464)
T KOG0284|consen  165 WQPNMNN-VKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKD  243 (464)
T ss_pred             cccchhh-hHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCC
Confidence            9875433 3334436779999999999888999999997           223479999999999999876  8999999


Q ss_pred             cEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEE
Q 006825          431 VRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLAN  510 (630)
Q Consensus       431 g~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~sva  510 (630)
                      ..|++||.+++.     |+.+|.+|+..|..+.|++++++|+|+|.|..++|+|+++-+.+..     +.+|...|.+++
T Consensus       244 nlVKlWDprSg~-----cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~-----~r~Hkkdv~~~~  313 (464)
T KOG0284|consen  244 NLVKLWDPRSGS-----CLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFT-----YRGHKKDVTSLT  313 (464)
T ss_pred             ceeEeecCCCcc-----hhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHH-----hhcchhhheeec
Confidence            999999998875     7889999999999999999999999999999999999986666655     589999999999


Q ss_pred             ECCC-CCEEEEeeCCCeeeeecccccccccccccCccccccEEEeCC-CCceEEe-ccCCCCEEEEEEcCC-CeEEEEEC
Q 006825          511 GSPE-PTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALS-DKPICSF-QGHLDDVLDLSWSKS-QHLLSSSM  586 (630)
Q Consensus       511 fSpd-g~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdls-gk~l~tL-~GHs~~V~sLafSPd-~~LaSgS~  586 (630)
                      |+|- ..++.+++.|+.|                       ..|.+. .+++..+ .+|...|++|+|+|- .+|++|+.
T Consensus       314 WhP~~~~lftsgg~Dgsv-----------------------vh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsn  370 (464)
T KOG0284|consen  314 WHPLNESLFTSGGSDGSV-----------------------VHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSN  370 (464)
T ss_pred             cccccccceeeccCCCce-----------------------EEEeccccccccCCCcccccceeeeeccccceeEeecCC
Confidence            9997 5678889999998                       555552 4455444 479999999999999 88999999


Q ss_pred             CCcEEEEeC
Q 006825          587 DKTVRLWHL  595 (630)
Q Consensus       587 DgtVrIWDl  595 (630)
                      |.++|+|.-
T Consensus       371 d~t~rfw~r  379 (464)
T KOG0284|consen  371 DRTVRFWTR  379 (464)
T ss_pred             Ccceeeecc
Confidence            999999964

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.92  E-value=1.7e-22  Score=238.43  Aligned_cols=273  Identities=16%  Similarity=0.137  Sum_probs=205.5

Q ss_pred             ccEEEEECCCCcEEEEeeecCCCceeEEEEcCC----CceEeeecceeeecCccceeEEEeec----ceEeecCCCccEe
Q 006825          291 QGCLIKNLDNGKEFVVNEIQEDGTWKKVKEVGT----GRQLTIEEFEMCVGHSPIVQELMRRQ----NVEEGNKDSFDLN  362 (630)
Q Consensus       291 ~~~~I~~LddG~~~~v~e~~~dg~~~~l~dv~T----G~~lt~eef~~l~GHs~~V~~Lafs~----~laSgS~D~tvr~  362 (630)
                      .++.|.--.+|+.+++..  .||. .++|+..+    ++.+. .....+.+ ...|..++|.+    .|++++.|++++ 
T Consensus       485 ~V~~i~fs~dg~~latgg--~D~~-I~iwd~~~~~~~~~~~~-~~~~~~~~-~~~v~~l~~~~~~~~~las~~~Dg~v~-  558 (793)
T PLN00181        485 LVCAIGFDRDGEFFATAG--VNKK-IKIFECESIIKDGRDIH-YPVVELAS-RSKLSGICWNSYIKSQVASSNFEGVVQ-  558 (793)
T ss_pred             cEEEEEECCCCCEEEEEe--CCCE-EEEEECCcccccccccc-cceEEecc-cCceeeEEeccCCCCEEEEEeCCCeEE-
Confidence            344454446787666543  3554 67999754    22110 01123333 45788999976    699999999999 


Q ss_pred             cccCCCCceeEEecCCccCCEEEEEEcC-CCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCC
Q 006825          363 NNGSSGGGMKSKKKGSWFKSIRTVASSV-TGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCK  441 (630)
Q Consensus       363 vWD~~tG~~~~~lk~gH~~~V~sVAfSp-dG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~  441 (630)
                      +||+.+++.+..++ +|.+.|.+|+|+| +|.+|                             ++|+.|++|++||+..+
T Consensus       559 lWd~~~~~~~~~~~-~H~~~V~~l~~~p~~~~~L-----------------------------~Sgs~Dg~v~iWd~~~~  608 (793)
T PLN00181        559 VWDVARSQLVTEMK-EHEKRVWSIDYSSADPTLL-----------------------------ASGSDDGSVKLWSINQG  608 (793)
T ss_pred             EEECCCCeEEEEec-CCCCCEEEEEEcCCCCCEE-----------------------------EEEcCCCEEEEEECCCC
Confidence            99999999999998 9999999999997 56555                             56677889999999765


Q ss_pred             cccceeeeeEecccCcCEEEEEEc-cCCCEEEEEeCCCcEEEEECcCCce-eeeeecccccCcccceEEEEECCCCCEEE
Q 006825          442 DLTALYKCQEIQAHNGSIWSIKFS-LDGRYLASAGEDCVIHVWQVVESER-KGELLEKQEDGHLNMLLLANGSPEPTSLS  519 (630)
Q Consensus       442 el~~~~~v~tL~gHt~~V~sVaFS-pDG~~LASgS~DgtIrVWDl~tg~~-~~~l~~~~~~gh~~~V~svafSpdg~~la  519 (630)
                      .     ++.++..| ..|.++.|+ ++|.+|++|+.|++|++||+.+... ...     ..+|...|..+.|. ++.+++
T Consensus       609 ~-----~~~~~~~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~-----~~~h~~~V~~v~f~-~~~~lv  676 (793)
T PLN00181        609 V-----SIGTIKTK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCT-----MIGHSKTVSYVRFV-DSSTLV  676 (793)
T ss_pred             c-----EEEEEecC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceE-----ecCCCCCEEEEEEe-CCCEEE
Confidence            4     35566655 689999995 5799999999999999999987653 333     37899999999997 788999


Q ss_pred             EeeCCCeeeeecccccccccccccCccccccEEEeCCCCceEEeccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCCC
Q 006825          520 PKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSK  598 (630)
Q Consensus       520 sgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg  598 (630)
                      +++.|++|++|+.....                -....+++.++.+|...|..++|+|+ ++|++|+.|++|+||+....
T Consensus       677 s~s~D~~ikiWd~~~~~----------------~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~  740 (793)
T PLN00181        677 SSSTDNTLKLWDLSMSI----------------SGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFP  740 (793)
T ss_pred             EEECCCEEEEEeCCCCc----------------cccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCC
Confidence            99999999444432100                00023678899999999999999999 99999999999999998766


Q ss_pred             cEEEEEe--------------cCCceEEEE-cCCCcEEEEecce
Q 006825          599 TCLKIFS--------------HSDYDISLV-DRLMLRFAYGAFL  627 (630)
Q Consensus       599 ~~l~t~~--------------H~~~V~sVa-s~~~~~lAsgs~~  627 (630)
                      ..+..+.              |...|.+++ ++.+..+++++..
T Consensus       741 ~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~d  784 (793)
T PLN00181        741 MPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANST  784 (793)
T ss_pred             CceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCC
Confidence            5443331              446689999 8888888777643

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=99.92  E-value=6.1e-25  Score=233.01  Aligned_cols=261  Identities=17%  Similarity=0.210  Sum_probs=217.3

Q ss_pred             ceeeecCccceeEEEeec----ceEeecCCCccEecccCCC-CceeEEecCCccCCEEEEEEcCCCCeEEeecCCC----
Q 006825          332 FEMCVGHSPIVQELMRRQ----NVEEGNKDSFDLNNNGSSG-GGMKSKKKGSWFKSIRTVASSVTGHKERRSSDER----  402 (630)
Q Consensus       332 f~~l~GHs~~V~~Lafs~----~laSgS~D~tvr~vWD~~t-G~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~----  402 (630)
                      ..++.||+..|.+|.|.|    .|+|++.|++|+ ||++-. +.+++++. ||...|+.++|+.+|..+.+++.|+    
T Consensus       207 ~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vk-lW~vy~~~~~lrtf~-gH~k~Vrd~~~s~~g~~fLS~sfD~~lKl  284 (503)
T KOG0282|consen  207 SHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVK-LWNVYDDRRCLRTFK-GHRKPVRDASFNNCGTSFLSASFDRFLKL  284 (503)
T ss_pred             eeeccCCccccchhhhccceeeEEEecCCCceEE-EEEEecCcceehhhh-cchhhhhhhhccccCCeeeeeecceeeee
Confidence            478999999999999999    799999999999 999977 99999999 9999999999999999999999998    


Q ss_pred             ---CCcc--ccCC-cceEEEeecCCCe---EEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEE
Q 006825          403 ---DTSS--EKGG-RRSSSATDDSQDV---SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLAS  473 (630)
Q Consensus       403 ---dt~s--~~gh-~~~Vsa~~~s~d~---l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LAS  473 (630)
                         +|+.  .+.| .....++.|.++.   ++.|..|++|+.||+.++++     +|++..|-+.|..|.|-++|++++|
T Consensus       285 wDtETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kv-----vqeYd~hLg~i~~i~F~~~g~rFis  359 (503)
T KOG0282|consen  285 WDTETGQVLSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKV-----VQEYDRHLGAILDITFVDEGRRFIS  359 (503)
T ss_pred             eccccceEEEEEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHH-----HHHHHhhhhheeeeEEccCCceEee
Confidence               3333  2222 3356777777766   89999999999999999874     7889999999999999999999999


Q ss_pred             EeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEE
Q 006825          474 AGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVF  553 (630)
Q Consensus       474 gS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vw  553 (630)
                      .++|++++||+...+-.+...    ...+.....++..+|.+.++++-+.|..|                       .+|
T Consensus       360 sSDdks~riWe~~~~v~ik~i----~~~~~hsmP~~~~~P~~~~~~aQs~dN~i-----------------------~if  412 (503)
T KOG0282|consen  360 SSDDKSVRIWENRIPVPIKNI----ADPEMHTMPCLTLHPNGKWFAAQSMDNYI-----------------------AIF  412 (503)
T ss_pred             eccCccEEEEEcCCCccchhh----cchhhccCcceecCCCCCeehhhccCceE-----------------------EEE
Confidence            999999999999877665543    23344556789999999999999999888                       344


Q ss_pred             eC----CCCceEEeccCC--CCEEEEEEcCC-CeEEEEECCCcEEEEeCCCCcEEEEEe-cCCceEEEE-cC-CCcEEEE
Q 006825          554 AL----SDKPICSFQGHL--DDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYDISLV-DR-LMLRFAY  623 (630)
Q Consensus       554 dl----sgk~l~tL~GHs--~~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg~~l~t~~-H~~~V~sVa-s~-~~~~lAs  623 (630)
                      ..    .-..-..|+||.  +.-..+.|||| .+|++|..||.+.+||..+.+.+..++ |...+..+. .| .-..+|+
T Consensus       413 s~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat  492 (503)
T KOG0282|consen  413 STVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVAT  492 (503)
T ss_pred             ecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEe
Confidence            33    223445688886  44577899999 999999999999999999999999999 999988888 44 3334555


Q ss_pred             ecc
Q 006825          624 GAF  626 (630)
Q Consensus       624 gs~  626 (630)
                      ++.
T Consensus       493 ~~w  495 (503)
T KOG0282|consen  493 CGW  495 (503)
T ss_pred             ccc
Confidence            543

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=99.92  E-value=2.7e-23  Score=207.64  Aligned_cols=214  Identities=20%  Similarity=0.236  Sum_probs=179.1

Q ss_pred             eeEEecCCccCCEEEEEEcCC-CCeEEeecCCC-----CCcc----------ccCCcceEEEeecCCCe--EEEecCCcE
Q 006825          371 MKSKKKGSWFKSIRTVASSVT-GHKERRSSDER-----DTSS----------EKGGRRSSSATDDSQDV--SFHGQERVR  432 (630)
Q Consensus       371 ~~~~lk~gH~~~V~sVAfSpd-G~~lasgS~D~-----dt~s----------~~gh~~~Vsa~~~s~d~--l~Sgs~Dg~  432 (630)
                      .++++. ||+++|..+||+|. |..|++++.|+     ++..          ..+|++.|..++++|.+  +++++.|.+
T Consensus         6 ~~~~~~-gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t   84 (312)
T KOG0645|consen    6 LEQKLS-GHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDAT   84 (312)
T ss_pred             eEEeec-CCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccce
Confidence            456677 99999999999998 88999999998     2221          45799999999999988  999999999


Q ss_pred             EEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEEC
Q 006825          433 VRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGS  512 (630)
Q Consensus       433 VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafS  512 (630)
                      +-||....+++   .++.+|.||...|.|++|+++|++|||++.|+.|-||.+..+......  ..+.+|..-|..+.|+
T Consensus        85 ~~Iw~k~~~ef---ecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~--aVL~~HtqDVK~V~WH  159 (312)
T KOG0645|consen   85 VVIWKKEDGEF---ECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECI--AVLQEHTQDVKHVIWH  159 (312)
T ss_pred             EEEeecCCCce---eEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEE--eeeccccccccEEEEc
Confidence            99999877665   589999999999999999999999999999999999999754432211  2258999999999999


Q ss_pred             CCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeCCCCceEEeccCCCCEEEEEEcCC-CeEEEEECCCcEE
Q 006825          513 PEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVR  591 (630)
Q Consensus       513 pdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL~GHs~~V~sLafSPd-~~LaSgS~DgtVr  591 (630)
                      |...+|++++.|.+|++|....                   +-.-.++++|.||...|.+++|+|. ..|++++.|++|+
T Consensus       160 Pt~dlL~S~SYDnTIk~~~~~~-------------------dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~  220 (312)
T KOG0645|consen  160 PTEDLLFSCSYDNTIKVYRDED-------------------DDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVS  220 (312)
T ss_pred             CCcceeEEeccCCeEEEEeecC-------------------CCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceE
Confidence            9999999999999995443210                   1123689999999999999999998 8999999999999


Q ss_pred             EEeCCCCcEEEEEe--cCCceEEEE
Q 006825          592 LWHLSSKTCLKIFS--HSDYDISLV  614 (630)
Q Consensus       592 IWDl~tg~~l~t~~--H~~~V~sVa  614 (630)
                      ||...     ..+.  |...++.|+
T Consensus       221 Iw~~~-----~~~~~~~sr~~Y~v~  240 (312)
T KOG0645|consen  221 IWRLY-----TDLSGMHSRALYDVP  240 (312)
T ss_pred             eeeec-----cCcchhcccceEeee
Confidence            99865     2233  777777777

>PTZ00420 coronin; Provisional

Probab=99.92  E-value=2.1e-22  Score=226.81  Aligned_cols=248  Identities=10%  Similarity=0.023  Sum_probs=183.8

Q ss_pred             ccccEEEEECCCCcEEEEeeecCCCceeEEEEcCCCceEeeecceeeecCccceeEEEeec----ceEeecCCCccEecc
Q 006825          289 AEQGCLIKNLDNGKEFVVNEIQEDGTWKKVKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQ----NVEEGNKDSFDLNNN  364 (630)
Q Consensus       289 ~~~~~~I~~LddG~~~~v~e~~~dg~~~~l~dv~TG~~lt~eef~~l~GHs~~V~~Lafs~----~laSgS~D~tvr~vW  364 (630)
                      .+....+|+...|..+-+         .+||+......+     ..+.||...|..|+|+|    .||||+.|++|+ +|
T Consensus        38 ~~~~A~~w~~~gGG~~gv---------I~L~~~~r~~~v-----~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIr-IW  102 (568)
T PTZ00420         38 SGFVAVPWEVEGGGLIGA---------IRLENQMRKPPV-----IKLKGHTSSILDLQFNPCFSEILASGSEDLTIR-VW  102 (568)
T ss_pred             CCeEEEEEEcCCCCceeE---------EEeeecCCCceE-----EEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEE-EE
Confidence            344566777766543322         347776665555     78899999999999998    699999999999 99


Q ss_pred             cCCCCc--------eeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCcEEEEE
Q 006825          365 GSSGGG--------MKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQY  436 (630)
Q Consensus       365 D~~tG~--------~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriW  436 (630)
                      |+.++.        .+..+. +|...|.+|+|+|++..+                            +++++.|++|++|
T Consensus       103 Di~t~~~~~~~i~~p~~~L~-gH~~~V~sVaf~P~g~~i----------------------------LaSgS~DgtIrIW  153 (568)
T PTZ00420        103 EIPHNDESVKEIKDPQCILK-GHKKKISIIDWNPMNYYI----------------------------MCSSGFDSFVNIW  153 (568)
T ss_pred             ECCCCCccccccccceEEee-cCCCcEEEEEECCCCCeE----------------------------EEEEeCCCeEEEE
Confidence            998653        234566 899999999999987643                            3567788999999


Q ss_pred             eCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceE-----EEEE
Q 006825          437 GKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLL-----LANG  511 (630)
Q Consensus       437 d~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~-----svaf  511 (630)
                      |+..++.     +..+. |...|.+++|+|+|.+|++++.|++|+|||+++++.+.++     .+|.+.+.     ...|
T Consensus       154 Dl~tg~~-----~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl-----~gH~g~~~s~~v~~~~f  222 (568)
T PTZ00420        154 DIENEKR-----AFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSF-----HIHDGGKNTKNIWIDGL  222 (568)
T ss_pred             ECCCCcE-----EEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEE-----ecccCCceeEEEEeeeE
Confidence            9987642     33454 6678999999999999999999999999999999887774     67766543     3446


Q ss_pred             CCCCCEEEEeeCCC----eeeeecccccccccccccCccccccEEEeCC--CCceEEecc--CCCCEEEEEEcCC-CeEE
Q 006825          512 SPEPTSLSPKHLDN----HLEKKRRGRSINRKSLSLDHMVVPETVFALS--DKPICSFQG--HLDDVLDLSWSKS-QHLL  582 (630)
Q Consensus       512 Spdg~~lasgs~Dg----~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdls--gk~l~tL~G--Hs~~V~sLafSPd-~~La  582 (630)
                      ++++.+|++++.++    .|                       ++|++.  ++++..+..  +.+.+......++ .+|+
T Consensus       223 s~d~~~IlTtG~d~~~~R~V-----------------------kLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~l  279 (568)
T PTZ00420        223 GGDDNYILSTGFSKNNMREM-----------------------KLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYL  279 (568)
T ss_pred             cCCCCEEEEEEcCCCCccEE-----------------------EEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEE
Confidence            68988999877664    56                       788873  566665533  3333333333444 7888


Q ss_pred             EEECCCcEEEEeCCCCcE--EEEEecCCceEEEE
Q 006825          583 SSSMDKTVRLWHLSSKTC--LKIFSHSDYDISLV  614 (630)
Q Consensus       583 SgS~DgtVrIWDl~tg~~--l~t~~H~~~V~sVa  614 (630)
                      +|+.|++||+|++..+.+  +..+.+..++.+++
T Consensus       280 sGkGD~tIr~~e~~~~~~~~l~~~~s~~p~~g~~  313 (568)
T PTZ00420        280 IGKGDGNCRYYQHSLGSIRKVNEYKSCSPFRSFG  313 (568)
T ss_pred             EEECCCeEEEEEccCCcEEeecccccCCCccceE
Confidence            999999999999987753  22333666666666

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.91  E-value=2.5e-23  Score=228.15  Aligned_cols=246  Identities=14%  Similarity=0.156  Sum_probs=208.2

Q ss_pred             eeeecCccceeEEEeec--ceEeecCCCccEecccCCCCceeE--EecCCccCCEEE-EEEcC-CCCeEEeecCCC----
Q 006825          333 EMCVGHSPIVQELMRRQ--NVEEGNKDSFDLNNNGSSGGGMKS--KKKGSWFKSIRT-VASSV-TGHKERRSSDER----  402 (630)
Q Consensus       333 ~~l~GHs~~V~~Lafs~--~laSgS~D~tvr~vWD~~tG~~~~--~lk~gH~~~V~s-VAfSp-dG~~lasgS~D~----  402 (630)
                      +.+.||..-|+.+++.+  .++++|.|+|++ +|+-..++.+.  .+. +|.+.|.. +++-+ ++-++++|+.|.    
T Consensus         8 ~~l~gH~~DVr~v~~~~~~~i~s~sRd~t~~-vw~~~~~~~l~~~~~~-~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v   85 (745)
T KOG0301|consen    8 HELEGHKSDVRAVAVTDGVCIISGSRDGTVK-VWAKKGKQYLETHAFE-GPKGFIANSICYAESDKGRLVVGGMDTTIIV   85 (745)
T ss_pred             EEeccCccchheeEecCCeEEeecCCCCcee-eeeccCcccccceecc-cCcceeeccceeccccCcceEeecccceEEE
Confidence            56789999999999988  689999999999 99886655444  344 78888887 88886 555688999887    


Q ss_pred             -------CCccccCCcceEEEeecCCCe-EEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEE
Q 006825          403 -------DTSSEKGGRRSSSATDDSQDV-SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASA  474 (630)
Q Consensus       403 -------dt~s~~gh~~~Vsa~~~s~d~-l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASg  474 (630)
                             ....++||+.-|+++....+. +++|+.|.++++|...  +     +...++||+.+||++++-|.+ .++||
T Consensus        86 ~~~~~~~P~~~LkgH~snVC~ls~~~~~~~iSgSWD~TakvW~~~--~-----l~~~l~gH~asVWAv~~l~e~-~~vTg  157 (745)
T KOG0301|consen   86 FKLSQAEPLYTLKGHKSNVCSLSIGEDGTLISGSWDSTAKVWRIG--E-----LVYSLQGHTASVWAVASLPEN-TYVTG  157 (745)
T ss_pred             EecCCCCchhhhhccccceeeeecCCcCceEecccccceEEecch--h-----hhcccCCcchheeeeeecCCC-cEEec
Confidence                   123499999999999977777 7999999999999653  2     456799999999999999988 79999


Q ss_pred             eCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEe
Q 006825          475 GEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFA  554 (630)
Q Consensus       475 S~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwd  554 (630)
                      |.|++||+|.-  ++.+++     +.+|...|..+++-+++. +++++.||.|                       +.|+
T Consensus       158 saDKtIklWk~--~~~l~t-----f~gHtD~VRgL~vl~~~~-flScsNDg~I-----------------------r~w~  206 (745)
T KOG0301|consen  158 SADKTIKLWKG--GTLLKT-----FSGHTDCVRGLAVLDDSH-FLSCSNDGSI-----------------------RLWD  206 (745)
T ss_pred             cCcceeeeccC--Cchhhh-----hccchhheeeeEEecCCC-eEeecCCceE-----------------------EEEe
Confidence            99999999986  566666     489999999999998765 5678899999                       8999


Q ss_pred             CCCCceEEeccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCCCcEEEEEecCC-ceEEEE-cCCCcEE
Q 006825          555 LSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFSHSD-YDISLV-DRLMLRF  621 (630)
Q Consensus       555 lsgk~l~tL~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg~~l~t~~H~~-~V~sVa-s~~~~~l  621 (630)
                      ++|+.+.++.||+..|++++..++ +.++|++.|+++|||+..  +|.+.+.|.. .||++. -.++..+
T Consensus       207 ~~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L~NgDIv  274 (745)
T KOG0301|consen  207 LDGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKVLLNGDIV  274 (745)
T ss_pred             ccCceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecCccceEEEEEeeCCCEE
Confidence            999999999999999999996665 999999999999999976  9999999665 899888 3344433

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.91  E-value=4.3e-23  Score=227.59  Aligned_cols=260  Identities=13%  Similarity=0.059  Sum_probs=222.9

Q ss_pred             eeecCccceeEEEeec---ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCC-------
Q 006825          334 MCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERD-------  403 (630)
Q Consensus       334 ~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~d-------  403 (630)
                      .+.||..-|..|+++.   .++||++ +.++ +|+..|+++++++.-+   .+.+..|-|.+++++.|.+.++       
T Consensus       368 ~~~GHR~dVRsl~vS~d~~~~~Sga~-~Sik-iWn~~t~kciRTi~~~---y~l~~~Fvpgd~~Iv~G~k~Gel~vfdla  442 (888)
T KOG0306|consen  368 EIGGHRSDVRSLCVSSDSILLASGAG-ESIK-IWNRDTLKCIRTITCG---YILASKFVPGDRYIVLGTKNGELQVFDLA  442 (888)
T ss_pred             eeccchhheeEEEeecCceeeeecCC-CcEE-EEEccCcceeEEeccc---cEEEEEecCCCceEEEeccCCceEEEEee
Confidence            4679999999999998   4555555 5677 9999999999999843   8999999999999999987662       


Q ss_pred             ----CccccCCcceEEEeecCCCe--EEEecCCcEEEEEeCCCCcc--c------ceeeeeEecccCcCEEEEEEccCCC
Q 006825          404 ----TSSEKGGRRSSSATDDSQDV--SFHGQERVRVRQYGKSCKDL--T------ALYKCQEIQAHNGSIWSIKFSLDGR  469 (630)
Q Consensus       404 ----t~s~~gh~~~Vsa~~~s~d~--l~Sgs~Dg~VriWd~~~~el--~------~~~~v~tL~gHt~~V~sVaFSpDG~  469 (630)
                          ....+.|...++.++..+++  +++|+.|.+|++|+.....-  .      .+...++| .-+..|.|+.+||||+
T Consensus       443 S~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtL-el~ddvL~v~~Spdgk  521 (888)
T KOG0306|consen  443 SASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTL-ELEDDVLCVSVSPDGK  521 (888)
T ss_pred             hhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEE-eccccEEEEEEcCCCc
Confidence                12256899999999999988  99999999999999642211  0      01111222 2457899999999999


Q ss_pred             EEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccc
Q 006825          470 YLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVP  549 (630)
Q Consensus       470 ~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~  549 (630)
                      +||.+-.|.||+||-+.+-+..-.     +.||.-+|.++.++||++++++|+.|.+|                      
T Consensus       522 ~LaVsLLdnTVkVyflDtlKFfls-----LYGHkLPV~smDIS~DSklivTgSADKnV----------------------  574 (888)
T KOG0306|consen  522 LLAVSLLDNTVKVYFLDTLKFFLS-----LYGHKLPVLSMDISPDSKLIVTGSADKNV----------------------  574 (888)
T ss_pred             EEEEEeccCeEEEEEecceeeeee-----ecccccceeEEeccCCcCeEEeccCCCce----------------------
Confidence            999999999999999988766555     48999999999999999999999999999                      


Q ss_pred             cEEEeC-CCCceEEeccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCCCcEEEEEe-cCCceEEEE-cCCCcEEEEec
Q 006825          550 ETVFAL-SDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYDISLV-DRLMLRFAYGA  625 (630)
Q Consensus       550 ~~Vwdl-sgk~l~tL~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg~~l~t~~-H~~~V~sVa-s~~~~~lAsgs  625 (630)
                       ++|.+ -|.|.+.|.+|.+.|.++.|-|. .++.|++.|+.||-||...-++++++. |...|+|++ .|++.++.+++
T Consensus       575 -KiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~s  653 (888)
T KOG0306|consen  575 -KIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSS  653 (888)
T ss_pred             -EEeccccchhhhhhhcccCceeEEEEcccceeEEEecCcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEecc
Confidence             88988 68999999999999999999999 889999999999999999999999998 999999999 99999988887


Q ss_pred             ce
Q 006825          626 FL  627 (630)
Q Consensus       626 ~~  627 (630)
                      .+
T Consensus       654 hD  655 (888)
T KOG0306|consen  654 HD  655 (888)
T ss_pred             CC
Confidence            64

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.91  E-value=8.3e-23  Score=203.30  Aligned_cols=252  Identities=18%  Similarity=0.187  Sum_probs=196.6

Q ss_pred             CceeecCCCCcccCCCccccccCCCCCcccccccEEEEECCCCcEEEEeeecCCCceeEEEEcCCCceEeeecceeeecC
Q 006825          259 DSMSINGNGNYIGNSGEVVEDFDGNGTAGVAEQGCLIKNLDNGKEFVVNEIQEDGTWKKVKEVGTGRQLTIEEFEMCVGH  338 (630)
Q Consensus       259 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~LddG~~~~v~e~~~dg~~~~l~dv~TG~~lt~eef~~l~GH  338 (630)
                      -||..+-||.+|              +++.-+.+.++||++-+ .|.+.                         ....||
T Consensus        24 ~Sv~wn~~g~~l--------------asgs~dktv~v~n~e~~-r~~~~-------------------------~~~~gh   63 (313)
T KOG1407|consen   24 HSVAWNCDGTKL--------------ASGSFDKTVSVWNLERD-RFRKE-------------------------LVYRGH   63 (313)
T ss_pred             eEEEEcccCcee--------------eecccCCceEEEEecch-hhhhh-------------------------hcccCC
Confidence            456777788777              55566677888888655 22211                         245789


Q ss_pred             ccceeEEEeec----ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCC-----Cc----
Q 006825          339 SPIVQELMRRQ----NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERD-----TS----  405 (630)
Q Consensus       339 s~~V~~Lafs~----~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~d-----t~----  405 (630)
                      +..|-+|++.|    .+++++.|+++| +||..++++..... .-...|. +.|+|+|++++.++.|..     ..    
T Consensus        64 ~~svdql~w~~~~~d~~atas~dk~ir-~wd~r~~k~~~~i~-~~~eni~-i~wsp~g~~~~~~~kdD~it~id~r~~~~  140 (313)
T KOG1407|consen   64 TDSVDQLCWDPKHPDLFATASGDKTIR-IWDIRSGKCTARIE-TKGENIN-ITWSPDGEYIAVGNKDDRITFIDARTYKI  140 (313)
T ss_pred             CcchhhheeCCCCCcceEEecCCceEE-EEEeccCcEEEEee-ccCcceE-EEEcCCCCEEEEecCcccEEEEEecccce
Confidence            99999999987    799999999999 99999999998877 5666776 899999999999887761     11    


Q ss_pred             ----cccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEE
Q 006825          406 ----SEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIH  481 (630)
Q Consensus       406 ----s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIr  481 (630)
                          ..+-..+.++.- .+.+.++....-|+|.|....     .+..++++++|.....||.|+|+|++||+|+.|-.+-
T Consensus       141 ~~~~~~~~e~ne~~w~-~~nd~Fflt~GlG~v~ILsyp-----sLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvS  214 (313)
T KOG1407|consen  141 VNEEQFKFEVNEISWN-NSNDLFFLTNGLGCVEILSYP-----SLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVS  214 (313)
T ss_pred             eehhcccceeeeeeec-CCCCEEEEecCCceEEEEecc-----ccccccccccCCcceEEEEECCCCceEeeccccceee
Confidence                122222333333 555666666677888887553     3457899999999999999999999999999999999


Q ss_pred             EEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeC-CCCce
Q 006825          482 VWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPI  560 (630)
Q Consensus       482 VWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l  560 (630)
                      |||+..--+++.+     ..+..+|..+.|+.+|++||+++.|..|.+                       =.+ +|..+
T Consensus       215 LWD~~ELiC~R~i-----sRldwpVRTlSFS~dg~~lASaSEDh~IDI-----------------------A~vetGd~~  266 (313)
T KOG1407|consen  215 LWDVDELICERCI-----SRLDWPVRTLSFSHDGRMLASASEDHFIDI-----------------------AEVETGDRV  266 (313)
T ss_pred             ccChhHhhhheee-----ccccCceEEEEeccCcceeeccCccceEEe-----------------------EecccCCeE
Confidence            9999988888874     788899999999999999999999998842                       222 56666


Q ss_pred             EEeccCCCCEEEEEEcCC-CeEEEEECCC
Q 006825          561 CSFQGHLDDVLDLSWSKS-QHLLSSSMDK  588 (630)
Q Consensus       561 ~tL~GHs~~V~sLafSPd-~~LaSgS~Dg  588 (630)
                      ..++ |.++...|+|+|. .+||-++.|+
T Consensus       267 ~eI~-~~~~t~tVAWHPk~~LLAyA~ddk  294 (313)
T KOG1407|consen  267 WEIP-CEGPTFTVAWHPKRPLLAYACDDK  294 (313)
T ss_pred             EEee-ccCCceeEEecCCCceeeEEecCC
Confidence            6555 7788899999999 8888777653

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.91  E-value=3.6e-23  Score=215.91  Aligned_cols=267  Identities=16%  Similarity=0.118  Sum_probs=221.3

Q ss_pred             ceEeeecceeeecCccceeEEEeec---ceEeecCCCccEecccCCCCc---eeEEecCCccCCEEEEEEcCCCCeEEee
Q 006825          325 RQLTIEEFEMCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGG---MKSKKKGSWFKSIRTVASSVTGHKERRS  398 (630)
Q Consensus       325 ~~lt~eef~~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~---~~~~lk~gH~~~V~sVAfSpdG~~lasg  398 (630)
                      .++..++.+.+..|+.-|+.+.|++   +|||+|.|.|+. +|.+..-.   .++++. ||..+|.-++||||.+|+++.
T Consensus       210 ~qip~qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Tai-iw~v~~d~~~kl~~tlv-gh~~~V~yi~wSPDdryLlaC  287 (519)
T KOG0293|consen  210 LQIPSQTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAI-IWIVVYDVHFKLKKTLV-GHSQPVSYIMWSPDDRYLLAC  287 (519)
T ss_pred             ccCCchhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEE-EEEEecCcceeeeeeee-cccCceEEEEECCCCCeEEec
Confidence            4677788899999999999999999   899999999999 99886644   477777 999999999999999999998


Q ss_pred             cCCC-------CCcc-----ccCCcceEEEeecCCCe--EEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEE
Q 006825          399 SDER-------DTSS-----EKGGRRSSSATDDSQDV--SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKF  464 (630)
Q Consensus       399 S~D~-------dt~s-----~~gh~~~Vsa~~~s~d~--l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaF  464 (630)
                      +.++       +++.     ..++...+++.+..+|+  +++|+.|+++..||.....+....-+     ....|++|++
T Consensus       288 g~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~W~gv-----r~~~v~dlai  362 (519)
T KOG0293|consen  288 GFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGNWEGV-----RDPKVHDLAI  362 (519)
T ss_pred             CchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcchhhccccc-----ccceeEEEEE
Confidence            8776       2322     44466888899999998  89999999999999987654332211     2256999999


Q ss_pred             ccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccC
Q 006825          465 SLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLD  544 (630)
Q Consensus       465 SpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d  544 (630)
                      .+||+++++...|..|++++.++......      .....+|+++..+.+++++++--.+..+                 
T Consensus       363 t~Dgk~vl~v~~d~~i~l~~~e~~~dr~l------ise~~~its~~iS~d~k~~LvnL~~qei-----------------  419 (519)
T KOG0293|consen  363 TYDGKYVLLVTVDKKIRLYNREARVDRGL------ISEEQPITSFSISKDGKLALVNLQDQEI-----------------  419 (519)
T ss_pred             cCCCcEEEEEecccceeeechhhhhhhcc------ccccCceeEEEEcCCCcEEEEEcccCee-----------------
Confidence            99999999999999999999987655433      3344689999999999999998888888                 


Q ss_pred             ccccccEEEeC-CCCceEEeccCCCC--EEEEEEcC-C-CeEEEEECCCcEEEEeCCCCcEEEEEe-cCCceEEEE-cC-
Q 006825          545 HMVVPETVFAL-SDKPICSFQGHLDD--VLDLSWSK-S-QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYDISLV-DR-  616 (630)
Q Consensus       545 ~~i~~~~Vwdl-sgk~l~tL~GHs~~--V~sLafSP-d-~~LaSgS~DgtVrIWDl~tg~~l~t~~-H~~~V~sVa-s~-  616 (630)
                            .+|++ ..+.++.+.||...  |-.-+|-. + .+++|||.|+.|+||+..+|+++.++. |...|+||+ +| 
T Consensus       420 ------~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~  493 (519)
T KOG0293|consen  420 ------HLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPA  493 (519)
T ss_pred             ------EEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCC
Confidence                  88888 56778889999864  44446654 4 899999999999999999999999999 999999999 44 


Q ss_pred             CCcEEEEecce
Q 006825          617 LMLRFAYGAFL  627 (630)
Q Consensus       617 ~~~~lAsgs~~  627 (630)
                      +...+|+++.+
T Consensus       494 ~p~m~ASasDD  504 (519)
T KOG0293|consen  494 DPEMFASASDD  504 (519)
T ss_pred             CHHHhhccCCC
Confidence            45567777655

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.91  E-value=2.7e-23  Score=205.55  Aligned_cols=258  Identities=14%  Similarity=0.122  Sum_probs=222.6

Q ss_pred             eeeecCccceeEEEeec------ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCC----
Q 006825          333 EMCVGHSPIVQELMRRQ------NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDER----  402 (630)
Q Consensus       333 ~~l~GHs~~V~~Lafs~------~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~----  402 (630)
                      .++.||+..|-.|+|+|      +|.|+|.|+.-. +-+-.||..+.++. ||.+.|.+..+..+-.+.++++.|=    
T Consensus         8 l~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pm-lr~g~tgdwigtfe-ghkgavw~~~l~~na~~aasaaadftakv   85 (334)
T KOG0278|consen    8 LTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPM-LRNGDTGDWIGTFE-GHKGAVWSATLNKNATRAASAAADFTAKV   85 (334)
T ss_pred             eEEcCCCcceeEEeccCCCCCceEEEEeccCCCch-hccCCCCCcEEeee-ccCcceeeeecCchhhhhhhhcccchhhh
Confidence            57899999999999999      799999998887 77899999999999 9999999998888877888877664    


Q ss_pred             ------CCccccCCcceEEEeecCCCe--EEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEE
Q 006825          403 ------DTSSEKGGRRSSSATDDSQDV--SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASA  474 (630)
Q Consensus       403 ------dt~s~~gh~~~Vsa~~~s~d~--l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASg  474 (630)
                            +..-.-.|...|.+++|++|.  +++|+.+..+|+||+...+.    ...++.+|++.|..+-|....+.|+|+
T Consensus        86 w~a~tgdelhsf~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~A----pp~E~~ghtg~Ir~v~wc~eD~~iLSS  161 (334)
T KOG0278|consen   86 WDAVTGDELHSFEHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKA----PPKEISGHTGGIRTVLWCHEDKCILSS  161 (334)
T ss_pred             hhhhhhhhhhhhhhhheeeeEEecccchhhhccchHHHhhhhhccCCCC----CchhhcCCCCcceeEEEeccCceEEee
Confidence                  111245689999999999998  99999999999999976654    456789999999999999988899999


Q ss_pred             eCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEe
Q 006825          475 GEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFA  554 (630)
Q Consensus       475 S~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwd  554 (630)
                      .+|++||+||.+++..++.|.      -...|.++.++++|.+|.++ ..+.|                       .+|+
T Consensus       162 add~tVRLWD~rTgt~v~sL~------~~s~VtSlEvs~dG~ilTia-~gssV-----------------------~Fwd  211 (334)
T KOG0278|consen  162 ADDKTVRLWDHRTGTEVQSLE------FNSPVTSLEVSQDGRILTIA-YGSSV-----------------------KFWD  211 (334)
T ss_pred             ccCCceEEEEeccCcEEEEEe------cCCCCcceeeccCCCEEEEe-cCcee-----------------------EEec
Confidence            999999999999999998863      33578899999999987766 56666                       6677


Q ss_pred             C-CCCceEEeccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCCCcEEEEE-e-cCCceEEEE-cCCCcEEEEecce
Q 006825          555 L-SDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIF-S-HSDYDISLV-DRLMLRFAYGAFL  627 (630)
Q Consensus       555 l-sgk~l~tL~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg~~l~t~-~-H~~~V~sVa-s~~~~~lAsgs~~  627 (630)
                      . +-.+++.++- .-.|.+.+++|+ ..++.|+.|..++.||..+|+.+..+ + |.++|.||. +|++..+|+|+.+
T Consensus       212 aksf~~lKs~k~-P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSED  288 (334)
T KOG0278|consen  212 AKSFGLLKSYKM-PCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSED  288 (334)
T ss_pred             cccccceeeccC-ccccccccccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCC
Confidence            6 4456666553 345889999999 99999999999999999999999988 4 999999999 9999999999865

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.91  E-value=5.9e-23  Score=208.37  Aligned_cols=239  Identities=15%  Similarity=0.221  Sum_probs=188.6

Q ss_pred             eeeecCccceeEEEee---cceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCc----
Q 006825          333 EMCVGHSPIVQELMRR---QNVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTS----  405 (630)
Q Consensus       333 ~~l~GHs~~V~~Lafs---~~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~----  405 (630)
                      ..+.||..-|+.++-.   |.+.++|.|.|.+ ||.+++|.|+.+.. ||.+.|++|+|++.|.+++++|.|....    
T Consensus       142 re~~GHkDGiW~Vaa~~tqpi~gtASADhTA~-iWs~Esg~CL~~Y~-GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~  219 (481)
T KOG0300|consen  142 RELEGHKDGIWHVAADSTQPICGTASADHTAR-IWSLESGACLATYT-GHTGSVNSIKFHNSGLLLLTASGDETAHIWKA  219 (481)
T ss_pred             hhhcccccceeeehhhcCCcceeeccccccee-EEeeccccceeeec-ccccceeeEEeccccceEEEccCCcchHHHHH
Confidence            3456666666666542   3699999999999 99999999999999 9999999999999999999999887211    


Q ss_pred             -------c---ccCCcce--EEEeecCCCeEEEe---cCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCE
Q 006825          406 -------S---EKGGRRS--SSATDDSQDVSFHG---QERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRY  470 (630)
Q Consensus       406 -------s---~~gh~~~--Vsa~~~s~d~l~Sg---s~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~  470 (630)
                             +   ..+|...  +-+.+ .......+   +...+||            .++..|+||.+.|.+..|-..|+.
T Consensus       220 av~~~vP~~~a~~~hSsEeE~e~sD-e~~~d~d~~~~sD~~tiR------------vPl~~ltgH~~vV~a~dWL~gg~Q  286 (481)
T KOG0300|consen  220 AVNWEVPSNNAPSDHSSEEEEEHSD-EHNRDTDSSEKSDGHTIR------------VPLMRLTGHRAVVSACDWLAGGQQ  286 (481)
T ss_pred             hhcCcCCCCCCCCCCCchhhhhccc-ccccccccccccCCceee------------eeeeeeeccccceEehhhhcCcce
Confidence                   1   1222110  00000 00000110   1111233            246789999999999999999999


Q ss_pred             EEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCcccccc
Q 006825          471 LASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPE  550 (630)
Q Consensus       471 LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~  550 (630)
                      ++|+++|++..+||+++++.+..|     .||......++-+|..+++++.+.|.+.                       
T Consensus       287 ~vTaSWDRTAnlwDVEtge~v~~L-----tGHd~ELtHcstHptQrLVvTsSrDtTF-----------------------  338 (481)
T KOG0300|consen  287 MVTASWDRTANLWDVETGEVVNIL-----TGHDSELTHCSTHPTQRLVVTSSRDTTF-----------------------  338 (481)
T ss_pred             eeeeeccccceeeeeccCceeccc-----cCcchhccccccCCcceEEEEeccCcee-----------------------
Confidence            999999999999999999998885     8999999999999999999999999999                       


Q ss_pred             EEEeCC--CCceEEeccCCCCEEEEEEcCCCeEEEEECCCcEEEEeCCCC-cEEEEEecCCceEEEE
Q 006825          551 TVFALS--DKPICSFQGHLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSSK-TCLKIFSHSDYDISLV  614 (630)
Q Consensus       551 ~Vwdls--gk~l~tL~GHs~~V~sLafSPd~~LaSgS~DgtVrIWDl~tg-~~l~t~~H~~~V~sVa  614 (630)
                      ++|++.  -..+..|+||++.|+++.|..+..+++||.|.||||||++.. .++.++.-.++++-|+
T Consensus       339 RLWDFReaI~sV~VFQGHtdtVTS~vF~~dd~vVSgSDDrTvKvWdLrNMRsplATIRtdS~~NRva  405 (481)
T KOG0300|consen  339 RLWDFREAIQSVAVFQGHTDTVTSVVFNTDDRVVSGSDDRTVKVWDLRNMRSPLATIRTDSPANRVA  405 (481)
T ss_pred             EeccchhhcceeeeecccccceeEEEEecCCceeecCCCceEEEeeeccccCcceeeecCCccceeE
Confidence            677763  356778999999999999999988999999999999999975 5788887777777776

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.90  E-value=1.1e-22  Score=202.96  Aligned_cols=255  Identities=16%  Similarity=0.111  Sum_probs=199.1

Q ss_pred             eEEEEcCCCceEeeecceeeecCccceeEEEeec---ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCC
Q 006825          316 KKVKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTG  392 (630)
Q Consensus       316 ~~l~dv~TG~~lt~eef~~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG  392 (630)
                      ..+|-.-.|+.|     .++.||++.|+++...-   .|++||.|.+++ +||+.+|+++.+++  ....|+.|-|+++|
T Consensus        34 ~~vw~s~nGerl-----Gty~GHtGavW~~Did~~s~~liTGSAD~t~k-LWDv~tGk~la~~k--~~~~Vk~~~F~~~g  105 (327)
T KOG0643|consen   34 PTVWYSLNGERL-----GTYDGHTGAVWCCDIDWDSKHLITGSADQTAK-LWDVETGKQLATWK--TNSPVKRVDFSFGG  105 (327)
T ss_pred             ceEEEecCCcee-----eeecCCCceEEEEEecCCcceeeeccccceeE-EEEcCCCcEEEEee--cCCeeEEEeeccCC
Confidence            457888889988     99999999999998755   899999999999 99999999999988  46789999999999


Q ss_pred             CeEEeecCCC----------CCc-------------cccCCcceEEEeecCCCe--EEEecCCcEEEEEeCCCCccccee
Q 006825          393 HKERRSSDER----------DTS-------------SEKGGRRSSSATDDSQDV--SFHGQERVRVRQYGKSCKDLTALY  447 (630)
Q Consensus       393 ~~lasgS~D~----------dt~-------------s~~gh~~~Vsa~~~s~d~--l~Sgs~Dg~VriWd~~~~el~~~~  447 (630)
                      .+++...++.          ++.             ...-+...++.+-+.+.+  +++|..+|.|.+||+.++..    
T Consensus       106 n~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~----  181 (327)
T KOG0643|consen  106 NLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKE----  181 (327)
T ss_pred             cEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCce----
Confidence            9888776654          110             122333445555555554  89999999999999988642    


Q ss_pred             eeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCee
Q 006825          448 KCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHL  527 (630)
Q Consensus       448 ~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I  527 (630)
                      .+...+-|...|+.|+|++|..+++|+|.|.+.++||+.+-+.++++      -...+|.+.+++|-...++.++.....
T Consensus       182 ~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty------~te~PvN~aaisP~~d~VilgGGqeA~  255 (327)
T KOG0643|consen  182 LVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTY------TTERPVNTAAISPLLDHVILGGGQEAM  255 (327)
T ss_pred             eeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEe------eecccccceecccccceEEecCCceee
Confidence            46677889999999999999999999999999999999998888774      345689999999987777766544333


Q ss_pred             eeecccccccccccccCccccccEEEeC-CCCceEEeccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCC
Q 006825          528 EKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSS  597 (630)
Q Consensus       528 ~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~t  597 (630)
                      .+......        .+.+ -.+.|++ ..+.+..++||-++|++|+|+|+ +..+||+.||.|||.....
T Consensus       256 dVTTT~~r--------~GKF-EArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~Fd~  318 (327)
T KOG0643|consen  256 DVTTTSTR--------AGKF-EARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHHFDS  318 (327)
T ss_pred             eeeeeccc--------ccch-hhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEEEecc
Confidence            22211110        0001 0134443 45677888999999999999999 8899999999999986654

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.90  E-value=8.3e-23  Score=206.67  Aligned_cols=248  Identities=17%  Similarity=0.150  Sum_probs=184.0

Q ss_pred             eeeecCccceeEEEeec----ceEeecCCCccEecccCCC-CceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccc
Q 006825          333 EMCVGHSPIVQELMRRQ----NVEEGNKDSFDLNNNGSSG-GGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSE  407 (630)
Q Consensus       333 ~~l~GHs~~V~~Lafs~----~laSgS~D~tvr~vWD~~t-G~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~  407 (630)
                      +.-.-..+.|.+|+|+|    .++.||||++|| +|++.. |....+-...|.++|.+++|+.||.++            
T Consensus        21 ev~~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR-~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskV------------   87 (347)
T KOG0647|consen   21 EVPNPPEDSISALAFSPQADNLLAAGSWDGTVR-IWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKV------------   87 (347)
T ss_pred             ecCCCcccchheeEeccccCceEEecccCCceE-EEEEecCCcccchhhhccCCCeEEEEEccCCceE------------
Confidence            33344567899999999    577999999999 999976 677766666899999999999998665            


Q ss_pred             cCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCC--EEEEEeCCCcEEEEEC
Q 006825          408 KGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGR--YLASAGEDCVIHVWQV  485 (630)
Q Consensus       408 ~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~--~LASgS~DgtIrVWDl  485 (630)
                                       ++|+.|+.+++||+.+++      ++.+..|.++|.++.|-+...  .|+|||.|+|||.||.
T Consensus        88 -----------------f~g~~Dk~~k~wDL~S~Q------~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~  144 (347)
T KOG0647|consen   88 -----------------FSGGCDKQAKLWDLASGQ------VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDT  144 (347)
T ss_pred             -----------------EeeccCCceEEEEccCCC------eeeeeecccceeEEEEecCCCcceeEecccccceeeccc
Confidence                             667778899999999885      467788999999999988665  8999999999999999


Q ss_pred             cCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccc-cc-----------------------c
Q 006825          486 VESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINR-KS-----------------------L  541 (630)
Q Consensus       486 ~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~-~s-----------------------~  541 (630)
                      +....+.++.      -...++++..  ...+++.+..+..|.++++...... +.                       .
T Consensus       145 R~~~pv~t~~------LPeRvYa~Dv--~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alG  216 (347)
T KOG0647|consen  145 RSSNPVATLQ------LPERVYAADV--LYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALG  216 (347)
T ss_pred             CCCCeeeeee------ccceeeehhc--cCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEee
Confidence            9877766542      1123333222  2334555556666666655331110 00                       0


Q ss_pred             ccCccccccEEEeC-CC--CceEEeccCCC---------CEEEEEEcCC-CeEEEEECCCcEEEEeCCCCcEEEEEe-cC
Q 006825          542 SLDHMVVPETVFAL-SD--KPICSFQGHLD---------DVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-HS  607 (630)
Q Consensus       542 s~d~~i~~~~Vwdl-sg--k~l~tL~GHs~---------~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg~~l~t~~-H~  607 (630)
                      +.++.+   .|..+ .+  +.-.+|+.|..         .|++|+|+|. +.|+|++.||++.+||-...+.|++.+ |.
T Consensus       217 siEGrv---~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~  293 (347)
T KOG0647|consen  217 SIEGRV---AIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHP  293 (347)
T ss_pred             eecceE---EEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCcCC
Confidence            011111   22223 12  44456777763         4788999999 999999999999999999999999988 99


Q ss_pred             CceEEEE-cCCCcEEEEecce
Q 006825          608 DYDISLV-DRLMLRFAYGAFL  627 (630)
Q Consensus       608 ~~V~sVa-s~~~~~lAsgs~~  627 (630)
                      .+|+|.. +.++.++|++..+
T Consensus       294 qpItcc~fn~~G~ifaYA~gY  314 (347)
T KOG0647|consen  294 QPITCCSFNRNGSIFAYALGY  314 (347)
T ss_pred             CccceeEecCCCCEEEEEeec
Confidence            9999999 8899999988543

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.90  E-value=1.2e-22  Score=227.39  Aligned_cols=262  Identities=14%  Similarity=0.129  Sum_probs=196.9

Q ss_pred             ceeecCCCCcccCCCccccccCCCCCcccccccEEEEECCCCcEEEEeeec---------C-----------CCceeEEE
Q 006825          260 SMSINGNGNYIGNSGEVVEDFDGNGTAGVAEQGCLIKNLDNGKEFVVNEIQ---------E-----------DGTWKKVK  319 (630)
Q Consensus       260 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~LddG~~~~v~e~~---------~-----------dg~~~~l~  319 (630)
                      .|.||+|||||              |++-+|+.++||.+-.-.++.+.+..         .           +....+..
T Consensus       272 ~mKFS~DGKyL--------------AsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s  337 (712)
T KOG0283|consen  272 AMKFSHDGKYL--------------ASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTS  337 (712)
T ss_pred             EEEeCCCCcee--------------eecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccc
Confidence            48999999999              88899999999998663333222211         0           00001111


Q ss_pred             EcCCCce------------EeeecceeeecCccceeEEEeec--ceEeecCCCccEecccCCCCceeEEecCCccCCEEE
Q 006825          320 EVGTGRQ------------LTIEEFEMCVGHSPIVQELMRRQ--NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRT  385 (630)
Q Consensus       320 dv~TG~~------------lt~eef~~l~GHs~~V~~Lafs~--~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~s  385 (630)
                      ...++.+            +.-+.|..|.||+.-|..|.|+.  +|.|+|.|+||| ||++...+|++.+.  |...|+|
T Consensus       338 ~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~fLLSSSMDKTVR-LWh~~~~~CL~~F~--HndfVTc  414 (712)
T KOG0283|consen  338 SSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNNFLLSSSMDKTVR-LWHPGRKECLKVFS--HNDFVTC  414 (712)
T ss_pred             ccccccCCccccCCCccccccccchhhhhccchhheecccccCCeeEeccccccEE-eecCCCcceeeEEe--cCCeeEE
Confidence            1112111            12245788999999999999997  899999999999 99999999999986  9999999


Q ss_pred             EEEcC-CCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEE
Q 006825          386 VASSV-TGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKF  464 (630)
Q Consensus       386 VAfSp-dG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaF  464 (630)
                      |||.| |-+|                             +++|+-|++||||++...+.      .....-...|++|+|
T Consensus       415 VaFnPvDDry-----------------------------FiSGSLD~KvRiWsI~d~~V------v~W~Dl~~lITAvcy  459 (712)
T KOG0283|consen  415 VAFNPVDDRY-----------------------------FISGSLDGKVRLWSISDKKV------VDWNDLRDLITAVCY  459 (712)
T ss_pred             EEecccCCCc-----------------------------EeecccccceEEeecCcCee------EeehhhhhhheeEEe
Confidence            99999 3333                             57788899999999977653      233334488999999


Q ss_pred             ccCCCEEEEEeCCCcEEEEECcCCceeeeeeccc----ccCcccceEEEEECCCC-CEEEEeeCCCeeeeeccccccccc
Q 006825          465 SLDGRYLASAGEDCVIHVWQVVESERKGELLEKQ----EDGHLNMLLLANGSPEP-TSLSPKHLDNHLEKKRRGRSINRK  539 (630)
Q Consensus       465 SpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~----~~gh~~~V~svafSpdg-~~lasgs~Dg~I~i~~~~~~~~~~  539 (630)
                      .|||++.+.|+.+|.+++|++...+.........    ...|. .|+.+.|.|.. ..++..+.|..|            
T Consensus       460 ~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~-rITG~Q~~p~~~~~vLVTSnDSrI------------  526 (712)
T KOG0283|consen  460 SPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGK-RITGLQFFPGDPDEVLVTSNDSRI------------  526 (712)
T ss_pred             ccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCc-eeeeeEecCCCCCeEEEecCCCce------------
Confidence            9999999999999999999998776554432111    12233 79999998753 345666688888            


Q ss_pred             ccccCccccccEEEeC-CCCceEEeccCCCC--EEEEEEcCC-CeEEEEECCCcEEEEeCCC
Q 006825          540 SLSLDHMVVPETVFAL-SDKPICSFQGHLDD--VLDLSWSKS-QHLLSSSMDKTVRLWHLSS  597 (630)
Q Consensus       540 s~s~d~~i~~~~Vwdl-sgk~l~tL~GHs~~--V~sLafSPd-~~LaSgS~DgtVrIWDl~t  597 (630)
                                 +|++. +.++++.|+|+...  =....|+.| ++|++++.|..|+||++..
T Consensus       527 -----------RI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~  577 (712)
T KOG0283|consen  527 -----------RIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKNDS  577 (712)
T ss_pred             -----------EEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCCC
Confidence                       78887 56788889886542  356789889 9999999999999999854

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.90  E-value=4e-22  Score=211.95  Aligned_cols=248  Identities=15%  Similarity=0.119  Sum_probs=208.0

Q ss_pred             ccceeEEEeec----c-eEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCC-----CCcc--
Q 006825          339 SPIVQELMRRQ----N-VEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDER-----DTSS--  406 (630)
Q Consensus       339 s~~V~~Lafs~----~-laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~-----dt~s--  406 (630)
                      -..|..|+|+|    . .+++|  ..+. +++..+-..++++. .+.+-|.++.|-.||++++.|...+     |..+  
T Consensus        26 ~~~vssl~fsp~~P~d~aVt~S--~rvq-ly~~~~~~~~k~~s-rFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~  101 (487)
T KOG0310|consen   26 HNSVSSLCFSPKHPYDFAVTSS--VRVQ-LYSSVTRSVRKTFS-RFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRV  101 (487)
T ss_pred             cCcceeEecCCCCCCceEEecc--cEEE-EEecchhhhhhhHH-hhccceeEEEeecCCeEEEccCCcCcEEEeccccHH
Confidence            36799999999    3 44444  3455 78887777777666 7889999999999999999987766     3222  


Q ss_pred             ----ccCCcceEEEeecCCCe---EEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEcc-CCCEEEEEeCCC
Q 006825          407 ----EKGGRRSSSATDDSQDV---SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSL-DGRYLASAGEDC  478 (630)
Q Consensus       407 ----~~gh~~~Vsa~~~s~d~---l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSp-DG~~LASgS~Dg  478 (630)
                          ...|+..|..+.|++..   +++|++|+.+++||+.+..     ...++.+|++.|.|.+|+| .+.+++|||+||
T Consensus       102 iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~-----v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg  176 (487)
T KOG0310|consen  102 ILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAY-----VQAELSGHTDYVRCGDISPANDHIVVTGSYDG  176 (487)
T ss_pred             HHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcE-----EEEEecCCcceeEeeccccCCCeEEEecCCCc
Confidence                78999999999998766   8999999999999998764     2458999999999999999 466999999999


Q ss_pred             cEEEEECcCC-ceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeCC-
Q 006825          479 VIHVWQVVES-ERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALS-  556 (630)
Q Consensus       479 tIrVWDl~tg-~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdls-  556 (630)
                      +||+||++.. ..+.+      ..|..+|..+.+-|.|.+|++++. ..+                       ++||++ 
T Consensus       177 ~vrl~DtR~~~~~v~e------lnhg~pVe~vl~lpsgs~iasAgG-n~v-----------------------kVWDl~~  226 (487)
T KOG0310|consen  177 KVRLWDTRSLTSRVVE------LNHGCPVESVLALPSGSLIASAGG-NSV-----------------------KVWDLTT  226 (487)
T ss_pred             eEEEEEeccCCceeEE------ecCCCceeeEEEcCCCCEEEEcCC-CeE-----------------------EEEEecC
Confidence            9999999876 44444      578899999999999999999854 345                       899984 


Q ss_pred             -CCceEEeccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCCCcEEEEEecCCceEEEE-cCCCcEEEEec
Q 006825          557 -DKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYDISLV-DRLMLRFAYGA  625 (630)
Q Consensus       557 -gk~l~tL~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg~~l~t~~H~~~V~sVa-s~~~~~lAsgs  625 (630)
                       ++.+..+..|...|+||.+..+ ..|+|||.|+.|++||+.+-+.++.+.-.++|.+++ +|....++.|-
T Consensus       227 G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~~~pvLsiavs~dd~t~viGm  298 (487)
T KOG0310|consen  227 GGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKYPGPVLSIAVSPDDQTVVIGM  298 (487)
T ss_pred             CceehhhhhcccceEEEEEeecCCceEeecccccceEEEEccceEEEEeeecccceeeEEecCCCceEEEec
Confidence             4566666669999999999998 999999999999999999999999999999999999 88777777663

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.90  E-value=6.8e-23  Score=208.30  Aligned_cols=271  Identities=15%  Similarity=0.136  Sum_probs=219.1

Q ss_pred             CceeecCCCCcccCCCccccccCCCCCcccccccEEEEECCCCcEEEEeeecCCCceeEEEEcCCCceEeeecceeeecC
Q 006825          259 DSMSINGNGNYIGNSGEVVEDFDGNGTAGVAEQGCLIKNLDNGKEFVVNEIQEDGTWKKVKEVGTGRQLTIEEFEMCVGH  338 (630)
Q Consensus       259 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~LddG~~~~v~e~~~dg~~~~l~dv~TG~~lt~eef~~l~GH  338 (630)
                      +.-.|||||+||              .++.-|+...+||.-+|+.--      |     |+         ...-..+.=|
T Consensus       217 EcA~FSPDgqyL--------------vsgSvDGFiEVWny~~GKlrK------D-----Lk---------YQAqd~fMMm  262 (508)
T KOG0275|consen  217 ECARFSPDGQYL--------------VSGSVDGFIEVWNYTTGKLRK------D-----LK---------YQAQDNFMMM  262 (508)
T ss_pred             hheeeCCCCceE--------------eeccccceeeeehhccchhhh------h-----hh---------hhhhcceeec
Confidence            335899999999              445567789999988885421      1     11         1111334456


Q ss_pred             ccceeEEEeec---ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEE
Q 006825          339 SPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSS  415 (630)
Q Consensus       339 s~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vs  415 (630)
                      ..+|.++.|+.   .||+|+-|+.|+ +|-+.||.|++++...|++.|.++.||.|+..+                    
T Consensus       263 d~aVlci~FSRDsEMlAsGsqDGkIK-vWri~tG~ClRrFdrAHtkGvt~l~FSrD~Sqi--------------------  321 (508)
T KOG0275|consen  263 DDAVLCISFSRDSEMLASGSQDGKIK-VWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQI--------------------  321 (508)
T ss_pred             ccceEEEeecccHHHhhccCcCCcEE-EEEEecchHHHHhhhhhccCeeEEEEccCcchh--------------------
Confidence            78999999987   899999999999 999999999999988999999999999987655                    


Q ss_pred             EeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeee
Q 006825          416 ATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELL  495 (630)
Q Consensus       416 a~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~  495 (630)
                               .+++.|.+||+-.++.++     ++.+++||...|+...|.+||.+++|++.||+||||+..+.+|..++.
T Consensus       322 ---------LS~sfD~tvRiHGlKSGK-----~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk  387 (508)
T KOG0275|consen  322 ---------LSASFDQTVRIHGLKSGK-----CLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFK  387 (508)
T ss_pred             ---------hcccccceEEEeccccch-----hHHHhcCccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhcc
Confidence                     455667789999988775     578899999999999999999999999999999999999999998863


Q ss_pred             cccccCcccceEEEEECCC-CCEEEEeeCCCeeeeecccccccccccccCccccccEEEeCCCCceEEecc---CCCCEE
Q 006825          496 EKQEDGHLNMLLLANGSPE-PTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQG---HLDDVL  571 (630)
Q Consensus       496 ~~~~~gh~~~V~svafSpd-g~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL~G---Hs~~V~  571 (630)
                         ..+....|..+-.-|. ...++.+-...++                       .|-++.|+.+++|..   ..+..-
T Consensus       388 ---~~~~d~~vnsv~~~PKnpeh~iVCNrsntv-----------------------~imn~qGQvVrsfsSGkREgGdFi  441 (508)
T KOG0275|consen  388 ---PLGTDYPVNSVILLPKNPEHFIVCNRSNTV-----------------------YIMNMQGQVVRSFSSGKREGGDFI  441 (508)
T ss_pred             ---CCCCcccceeEEEcCCCCceEEEEcCCCeE-----------------------EEEeccceEEeeeccCCccCCceE
Confidence               2345566777777765 5566777677777                       677778899998853   234566


Q ss_pred             EEEEcCC-CeEEEEECCCcEEEEeCCCCcEEEEEe-cCCceEEEE-cCCCcEEEEe
Q 006825          572 DLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYDISLV-DRLMLRFAYG  624 (630)
Q Consensus       572 sLafSPd-~~LaSgS~DgtVrIWDl~tg~~l~t~~-H~~~V~sVa-s~~~~~lAsg  624 (630)
                      +.+.+|. .++...+.|+.++.|.+.+|++-+++. |...|..++ +|-...+|+=
T Consensus       442 ~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqNllAsY  497 (508)
T KOG0275|consen  442 NAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQNLLASY  497 (508)
T ss_pred             EEEecCCCcEEEEEccCcEEEEEEeecCceeeeeecccccccccccCcccchhhhh
Confidence            7788998 899999999999999999999999998 998888888 6666666543

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.90  E-value=4.2e-22  Score=206.46  Aligned_cols=245  Identities=19%  Similarity=0.260  Sum_probs=203.7

Q ss_pred             CCceeEEEEcCCCceEeeecceeeecCccceeEEEeec------ceEeecCCCccEecccCCCCce----eEEecCCccC
Q 006825          312 DGTWKKVKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQ------NVEEGNKDSFDLNNNGSSGGGM----KSKKKGSWFK  381 (630)
Q Consensus       312 dg~~~~l~dv~TG~~lt~eef~~l~GHs~~V~~Lafs~------~laSgS~D~tvr~vWD~~tG~~----~~~lk~gH~~  381 (630)
                      ||. .++|+.. |+..     .++.||++.|.++++.-      .++++|.|.|++ +|-.+.|+.    ++..+ ||.+
T Consensus       124 Dg~-~riWd~~-Gk~~-----~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~-Lw~~~~~~~~~~~~~~~~-GHk~  194 (423)
T KOG0313|consen  124 DGT-SRIWDLK-GKSI-----KTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLR-LWKWNVGENKVKALKVCR-GHKR  194 (423)
T ss_pred             CCe-eEEEecC-CceE-----EEEecCCcceeeeEEEecCCccceEEEecCCceEE-EEEecCchhhhhHHhHhc-cccc
Confidence            444 5677754 6666     78999999999888754      599999999999 998887763    33444 9999


Q ss_pred             CEEEEEEcCCCCeEEeecCCC-----C-------------------------------CccccCCcceEEEeecCCCe-E
Q 006825          382 SIRTVASSVTGHKERRSSDER-----D-------------------------------TSSEKGGRRSSSATDDSQDV-S  424 (630)
Q Consensus       382 ~V~sVAfSpdG~~lasgS~D~-----d-------------------------------t~s~~gh~~~Vsa~~~s~d~-l  424 (630)
                      .|.+|+..++|.++.+||-|.     +                               ...+.||...|.++.+.... +
T Consensus       195 ~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d~~v~  274 (423)
T KOG0313|consen  195 SVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSDATVI  274 (423)
T ss_pred             ceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcCCCce
Confidence            999999999999999999876     0                               00178999999999998866 9


Q ss_pred             EEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccCccc
Q 006825          425 FHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLN  504 (630)
Q Consensus       425 ~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~  504 (630)
                      ++++.|.+|+.||+.++..     +.++. -..+++||.++|..++||+|+.|..|||||-+++.-.  +....+.+|.+
T Consensus       275 yS~SwDHTIk~WDletg~~-----~~~~~-~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs--~v~~s~~gH~n  346 (423)
T KOG0313|consen  275 YSVSWDHTIKVWDLETGGL-----KSTLT-TNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGS--VVSQSLIGHKN  346 (423)
T ss_pred             EeecccceEEEEEeecccc-----eeeee-cCcceeEeecccccceeeecCCCCceeecCCCCCCCc--eeEEeeecchh
Confidence            9999999999999987753     33444 3457999999999999999999999999999877422  22234689999


Q ss_pred             ceEEEEECCCC-CEEEEeeCCCeeeeecccccccccccccCccccccEEEeC-CC-CceEEeccCCCCEEEEEEcCCCeE
Q 006825          505 MLLLANGSPEP-TSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SD-KPICSFQGHLDDVLDLSWSKSQHL  581 (630)
Q Consensus       505 ~V~svafSpdg-~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sg-k~l~tL~GHs~~V~sLafSPd~~L  581 (630)
                      .|.++.|+|.. ..|++++.|+++                       ++||+ +. .++..+.+|.+.|.++.|....++
T Consensus       347 wVssvkwsp~~~~~~~S~S~D~t~-----------------------klWDvRS~k~plydI~~h~DKvl~vdW~~~~~I  403 (423)
T KOG0313|consen  347 WVSSVKWSPTNEFQLVSGSYDNTV-----------------------KLWDVRSTKAPLYDIAGHNDKVLSVDWNEGGLI  403 (423)
T ss_pred             hhhheecCCCCceEEEEEecCCeE-----------------------EEEEeccCCCcceeeccCCceEEEEeccCCceE
Confidence            99999999984 567889999999                       88888 44 499999999999999999887899


Q ss_pred             EEEECCCcEEEEeCC
Q 006825          582 LSSSMDKTVRLWHLS  596 (630)
Q Consensus       582 aSgS~DgtVrIWDl~  596 (630)
                      +||+.|++|+|+...
T Consensus       404 vSGGaD~~l~i~~~~  418 (423)
T KOG0313|consen  404 VSGGADNKLRIFKGS  418 (423)
T ss_pred             EeccCcceEEEeccc
Confidence            999999999998654

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.89  E-value=7.1e-22  Score=216.06  Aligned_cols=245  Identities=17%  Similarity=0.201  Sum_probs=211.0

Q ss_pred             CCceeEEEEcCCCceEeeecceeeecCccceeEEEeec---ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEE
Q 006825          312 DGTWKKVKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVAS  388 (630)
Q Consensus       312 dg~~~~l~dv~TG~~lt~eef~~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAf  388 (630)
                      .|.+..||+..+|+.+.+.+|.     ...|+++.+.+   +||.|..++++. |||+.+.+...++.++|...|-++||
T Consensus       195 lg~~vylW~~~s~~v~~l~~~~-----~~~vtSv~ws~~G~~LavG~~~g~v~-iwD~~~~k~~~~~~~~h~~rvg~laW  268 (484)
T KOG0305|consen  195 LGQSVYLWSASSGSVTELCSFG-----EELVTSVKWSPDGSHLAVGTSDGTVQ-IWDVKEQKKTRTLRGSHASRVGSLAW  268 (484)
T ss_pred             ecceEEEEecCCCceEEeEecC-----CCceEEEEECCCCCEEEEeecCCeEE-EEehhhccccccccCCcCceeEEEec
Confidence            4567899999999987555544     78899999998   899999999999 99999999999999459999999999


Q ss_pred             cCCCCeEEeecCCCC------------CccccCCcceEEEeecCCCe--EEEecCCcEEEEEeCCCCcccceeeeeEecc
Q 006825          389 SVTGHKERRSSDERD------------TSSEKGGRRSSSATDDSQDV--SFHGQERVRVRQYGKSCKDLTALYKCQEIQA  454 (630)
Q Consensus       389 SpdG~~lasgS~D~d------------t~s~~gh~~~Vsa~~~s~d~--l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~g  454 (630)
                      .  +..+.+|+.+..            .....+|...|+.+.++.++  +++|+.|..+.|||....+     ....+..
T Consensus       269 ~--~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~-----p~~~~~~  341 (484)
T KOG0305|consen  269 N--SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPE-----PKFTFTE  341 (484)
T ss_pred             c--CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCcc-----ccEEEec
Confidence            8  577888888871            11378899999999999999  9999999999999985443     4677899


Q ss_pred             cCcCEEEEEEcc-CCCEEEEEe--CCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEe--eCCCeeee
Q 006825          455 HNGSIWSIKFSL-DGRYLASAG--EDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPK--HLDNHLEK  529 (630)
Q Consensus       455 Ht~~V~sVaFSp-DG~~LASgS--~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasg--s~Dg~I~i  529 (630)
                      |+.+|.+++|+| ...+||+|+  .|+.|++||+.++..+..+      .....|..|.|++..+-|+++  ..+..|  
T Consensus       342 H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~v------dtgsQVcsL~Wsk~~kEi~sthG~s~n~i--  413 (484)
T KOG0305|consen  342 HTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSV------DTGSQVCSLIWSKKYKELLSTHGYSENQI--  413 (484)
T ss_pred             cceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEeccc------ccCCceeeEEEcCCCCEEEEecCCCCCcE--
Confidence            999999999999 778999974  8999999999999988774      445789999999998766664  333445  


Q ss_pred             ecccccccccccccCccccccEEEeC-CCCceEEeccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCCC
Q 006825          530 KRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSK  598 (630)
Q Consensus       530 ~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg  598 (630)
                                           .||.. +-+++..+.||...|..++++|| ..+++|+.|.|+|+|++-..
T Consensus       414 ---------------------~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~  463 (484)
T KOG0305|consen  414 ---------------------TLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFDE  463 (484)
T ss_pred             ---------------------EEEeccccceeeeecCCcceeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence                                 78887 67889999999999999999999 99999999999999998764

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=99.89  E-value=1.2e-21  Score=202.44  Aligned_cols=245  Identities=13%  Similarity=0.073  Sum_probs=205.5

Q ss_pred             eeEEEEcCCCceEeeecceeeecCccceeEEEeec---ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCC
Q 006825          315 WKKVKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVT  391 (630)
Q Consensus       315 ~~~l~dv~TG~~lt~eef~~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpd  391 (630)
                      .+.||+..+|+.+     ..+.||...|.+++|+-   +||||..++.++ ||.+.+|....++- +--..|-=+.|+|.
T Consensus        87 ~AflW~~~~ge~~-----~eltgHKDSVt~~~FshdgtlLATGdmsG~v~-v~~~stg~~~~~~~-~e~~dieWl~WHp~  159 (399)
T KOG0296|consen   87 LAFLWDISTGEFA-----GELTGHKDSVTCCSFSHDGTLLATGDMSGKVL-VFKVSTGGEQWKLD-QEVEDIEWLKWHPR  159 (399)
T ss_pred             eEEEEEccCCcce-----eEecCCCCceEEEEEccCceEEEecCCCccEE-EEEcccCceEEEee-cccCceEEEEeccc
Confidence            4779999999988     89999999999999997   999999999999 99999999999886 55566767899999


Q ss_pred             CCeEEeecCCCC-----------CccccCCcceEEEeecCCCe--EEEecCCcEEEEEeCCCCcccc---------e---
Q 006825          392 GHKERRSSDERD-----------TSSEKGGRRSSSATDDSQDV--SFHGQERVRVRQYGKSCKDLTA---------L---  446 (630)
Q Consensus       392 G~~lasgS~D~d-----------t~s~~gh~~~Vsa~~~s~d~--l~Sgs~Dg~VriWd~~~~el~~---------~---  446 (630)
                      +..|+.|+.|..           .....||...+++..|.+++  ++++..|++|++|+.+++....         .   
T Consensus       160 a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~  239 (399)
T KOG0296|consen  160 AHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCI  239 (399)
T ss_pred             ccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCcc
Confidence            999999999981           12288999999999999999  9999999999999998763210         0   


Q ss_pred             --------------------------eeeeEec--------ccCcCEEEEEEcc---CCCEEEEEeCCCcEEEEECcCCc
Q 006825          447 --------------------------YKCQEIQ--------AHNGSIWSIKFSL---DGRYLASAGEDCVIHVWQVVESE  489 (630)
Q Consensus       447 --------------------------~~v~tL~--------gHt~~V~sVaFSp---DG~~LASgS~DgtIrVWDl~tg~  489 (630)
                                                ..+..+.        .|...+.+|.|.|   .=.+.|.|+.||+|-|||+....
T Consensus       240 ~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~  319 (399)
T KOG0296|consen  240 SLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAAST  319 (399)
T ss_pred             ccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccch
Confidence                                      0001111        3444555555555   44578999999999999998766


Q ss_pred             eeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeC-CCCceEEeccCCC
Q 006825          490 RKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLD  568 (630)
Q Consensus       490 ~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL~GHs~  568 (630)
                      ....      -.|...|..+.|-+ ..+|++++.+|+|                       +.|+. +|+++.++.||..
T Consensus       320 ~R~~------c~he~~V~~l~w~~-t~~l~t~c~~g~v-----------------------~~wDaRtG~l~~~y~GH~~  369 (399)
T KOG0296|consen  320 LRHI------CEHEDGVTKLKWLN-TDYLLTACANGKV-----------------------RQWDARTGQLKFTYTGHQM  369 (399)
T ss_pred             hhee------ccCCCceEEEEEcC-cchheeeccCceE-----------------------EeeeccccceEEEEecCch
Confidence            5444      56888899999998 7889999999999                       88887 9999999999999


Q ss_pred             CEEEEEEcCC-CeEEEEECCCcEEEEeCC
Q 006825          569 DVLDLSWSKS-QHLLSSSMDKTVRLWHLS  596 (630)
Q Consensus       569 ~V~sLafSPd-~~LaSgS~DgtVrIWDl~  596 (630)
                      .|.+++++|+ ++++|+|.|++.+||++.
T Consensus       370 ~Il~f~ls~~~~~vvT~s~D~~a~VF~v~  398 (399)
T KOG0296|consen  370 GILDFALSPQKRLVVTVSDDNTALVFEVP  398 (399)
T ss_pred             heeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence            9999999999 999999999999999875

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.89  E-value=8e-22  Score=208.43  Aligned_cols=270  Identities=18%  Similarity=0.150  Sum_probs=214.0

Q ss_pred             ceeeecCccceeEEEeec---ceEeecCCCccEecccCCCCcee----EE---e---------c-CCccCCEEEEEEcCC
Q 006825          332 FEMCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMK----SK---K---------K-GSWFKSIRTVASSVT  391 (630)
Q Consensus       332 f~~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~----~~---l---------k-~gH~~~V~sVAfSpd  391 (630)
                      |..+..|.-.|.+++++|   ++.++|.|+++. -|++.+|+..    .+   +         . .+|.+.|.++|.|+|
T Consensus       135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~-kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~D  213 (479)
T KOG0299|consen  135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTIL-KWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSD  213 (479)
T ss_pred             ceeeccccCcceEEEeeccccceeecCCCccee-eeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCC
Confidence            788899999999999999   799999999999 9999998843    11   0         0 289999999999999


Q ss_pred             CCeEEeecCCC-------CCc----cccCCcceEEEeecCCCe--EEEecCCcEEEEEeCCCCcccceeeeeEecccCcC
Q 006825          392 GHKERRSSDER-------DTS----SEKGGRRSSSATDDSQDV--SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGS  458 (630)
Q Consensus       392 G~~lasgS~D~-------dt~----s~~gh~~~Vsa~~~s~d~--l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~  458 (630)
                      |+||++|..|+       ++.    .+++|...|.++.|...-  +++++.|.+|++|++....     .+.+|.||.+.
T Consensus       214 gkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s-----~vetlyGHqd~  288 (479)
T KOG0299|consen  214 GKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLS-----YVETLYGHQDG  288 (479)
T ss_pred             CcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhH-----HHHHHhCCccc
Confidence            99999999988       222    279999999999988654  9999999999999986543     36789999999


Q ss_pred             EEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccc
Q 006825          459 IWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINR  538 (630)
Q Consensus       459 V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~  538 (630)
                      |..|....-++.+-.|+.|++++||++....  +.+    +.++.+.+-+++|-.+ ..+++|+.+|.|.+|...+..++
T Consensus       289 v~~IdaL~reR~vtVGgrDrT~rlwKi~ees--qli----frg~~~sidcv~~In~-~HfvsGSdnG~IaLWs~~KKkpl  361 (479)
T KOG0299|consen  289 VLGIDALSRERCVTVGGRDRTVRLWKIPEES--QLI----FRGGEGSIDCVAFIND-EHFVSGSDNGSIALWSLLKKKPL  361 (479)
T ss_pred             eeeechhcccceEEeccccceeEEEeccccc--eee----eeCCCCCeeeEEEecc-cceeeccCCceEEEeeecccCce
Confidence            9999998888888888899999999994432  222    5888889999999755 56789999999966665554443


Q ss_pred             cccccCccccccEEEeCCCCceEEeccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCCC----cEEEEEecCCceEEE
Q 006825          539 KSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSK----TCLKIFSHSDYDISL  613 (630)
Q Consensus       539 ~s~s~d~~i~~~~Vwdlsgk~l~tL~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg----~~l~t~~H~~~V~sV  613 (630)
                      .+....+.+.+..          .-..+..+|++|+..|. .+++|||.+|.||||.+..+    +++..++-.+.|++|
T Consensus       362 f~~~~AHgv~~~~----------~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls~~GfVNsl  431 (479)
T KOG0299|consen  362 FTSRLAHGVIPEL----------DPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLSLVGFVNSL  431 (479)
T ss_pred             eEeeccccccCCc----------cccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecccccEEEEE
Confidence            3333333221110          00123358999999999 99999999999999999887    456666688999999


Q ss_pred             E-cCCCcEEEEe
Q 006825          614 V-DRLMLRFAYG  624 (630)
Q Consensus       614 a-s~~~~~lAsg  624 (630)
                      + ..++..+..|
T Consensus       432 ~f~~sgk~ivag  443 (479)
T KOG0299|consen  432 AFSNSGKRIVAG  443 (479)
T ss_pred             EEccCCCEEEEe
Confidence            9 7777755554

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.89  E-value=3.9e-22  Score=222.60  Aligned_cols=247  Identities=13%  Similarity=0.088  Sum_probs=204.6

Q ss_pred             eEEEEcCCCceEeeecceeeecCccceeEEEeec---ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCC
Q 006825          316 KKVKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTG  392 (630)
Q Consensus       316 ~~l~dv~TG~~lt~eef~~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG  392 (630)
                      .+|||-+-|..|     +.|.+|.+.|+.++|+|   ..+||++|.+|+ ||+-.+.+++.++. ||.+.|+.+.|++.-
T Consensus        33 IQlWDYRM~tli-----~rFdeHdGpVRgv~FH~~qplFVSGGDDykIk-VWnYk~rrclftL~-GHlDYVRt~~FHhey  105 (1202)
T KOG0292|consen   33 IQLWDYRMGTLI-----DRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIK-VWNYKTRRCLFTLL-GHLDYVRTVFFHHEY  105 (1202)
T ss_pred             eeeehhhhhhHH-----hhhhccCCccceeeecCCCCeEEecCCccEEE-EEecccceehhhhc-cccceeEEeeccCCC
Confidence            469999999998     99999999999999998   799999999999 99999999999999 999999999999999


Q ss_pred             CeEEeecCCC-------C----CccccCCcceEEEeecCCC--eEEEecCCcEEEEEeCCCCc-----------------
Q 006825          393 HKERRSSDER-------D----TSSEKGGRRSSSATDDSQD--VSFHGQERVRVRQYGKSCKD-----------------  442 (630)
Q Consensus       393 ~~lasgS~D~-------d----t~s~~gh~~~Vsa~~~s~d--~l~Sgs~Dg~VriWd~~~~e-----------------  442 (630)
                      .+|.+.|+|.       .    ...++||.+-|.|..|.+.  .+++++-|-+||+||...-.                 
T Consensus       106 PWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~  185 (1202)
T KOG0292|consen  106 PWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQ  185 (1202)
T ss_pred             ceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccc
Confidence            9999999998       2    2339999999999999984  49999999999999975311                 


Q ss_pred             ----cc---ceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCC
Q 006825          443 ----LT---ALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEP  515 (630)
Q Consensus       443 ----l~---~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg  515 (630)
                          +-   .....+.|.||...|+.++|+|.-.+|+||+.|+.||+|.+..-+.- +  .....||.+.|.++-|+|..
T Consensus       186 ~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaW-E--vDtcrgH~nnVssvlfhp~q  262 (1202)
T KOG0292|consen  186 GNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAW-E--VDTCRGHYNNVSSVLFHPHQ  262 (1202)
T ss_pred             cchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccce-e--ehhhhcccCCcceEEecCcc
Confidence                00   01123678999999999999999999999999999999998754432 2  13358999999999999999


Q ss_pred             CEEEEeeCCCeeeeecccccccccccccCccccccEEEeC-CCCceEEeccCCCCEEEEEEcCC-CeEEEEECCCcEEEE
Q 006825          516 TSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLW  593 (630)
Q Consensus       516 ~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL~GHs~~V~sLafSPd-~~LaSgS~DgtVrIW  593 (630)
                      .+|++.+.|++|                       +||++ ..+.+++|.--.+..+.|+-+|. ++++.| .|+-+-+|
T Consensus       263 ~lIlSnsEDksi-----------------------rVwDm~kRt~v~tfrrendRFW~laahP~lNLfAAg-HDsGm~VF  318 (1202)
T KOG0292|consen  263 DLILSNSEDKSI-----------------------RVWDMTKRTSVQTFRRENDRFWILAAHPELNLFAAG-HDSGMIVF  318 (1202)
T ss_pred             ceeEecCCCccE-----------------------EEEecccccceeeeeccCCeEEEEEecCCcceeeee-cCCceEEE
Confidence            999999999999                       67777 45677777666666777777777 544444 44445555


Q ss_pred             eCC
Q 006825          594 HLS  596 (630)
Q Consensus       594 Dl~  596 (630)
                      .++
T Consensus       319 kle  321 (1202)
T KOG0292|consen  319 KLE  321 (1202)
T ss_pred             EEc
Confidence            554

>PTZ00420 coronin; Provisional

Probab=99.89  E-value=2.6e-21  Score=218.06  Aligned_cols=215  Identities=17%  Similarity=0.147  Sum_probs=168.0

Q ss_pred             eecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCC-CCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCc
Q 006825          353 EGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVT-GHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERV  431 (630)
Q Consensus       353 SgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpd-G~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg  431 (630)
                      .|+.++.++ +|+..+...+..++ +|.+.|.+|+|+|+ +.+|                             ++|+.|+
T Consensus        49 gGG~~gvI~-L~~~~r~~~v~~L~-gH~~~V~~lafsP~~~~lL-----------------------------ASgS~Dg   97 (568)
T PTZ00420         49 GGGLIGAIR-LENQMRKPPVIKLK-GHTSSILDLQFNPCFSEIL-----------------------------ASGSEDL   97 (568)
T ss_pred             CCCceeEEE-eeecCCCceEEEEc-CCCCCEEEEEEcCCCCCEE-----------------------------EEEeCCC
Confidence            456668889 99988877888888 99999999999996 4444                             6677888


Q ss_pred             EEEEEeCCCCcc--cc-eeeeeEecccCcCEEEEEEccCCCE-EEEEeCCCcEEEEECcCCceeeeeecccccCcccceE
Q 006825          432 RVRQYGKSCKDL--TA-LYKCQEIQAHNGSIWSIKFSLDGRY-LASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLL  507 (630)
Q Consensus       432 ~VriWd~~~~el--~~-~~~v~tL~gHt~~V~sVaFSpDG~~-LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~  507 (630)
                      +|++|++.....  .. ...+..+.+|...|.+|+|+|++.. |+|++.|++|+|||+.+++....+      .|...|.
T Consensus        98 tIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i------~~~~~V~  171 (568)
T PTZ00420         98 TIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQI------NMPKKLS  171 (568)
T ss_pred             eEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEE------ecCCcEE
Confidence            999999875421  00 1234578999999999999999875 579999999999999988766553      2456799


Q ss_pred             EEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeC-CCCceEEeccCCCCEEEE-----EEcCC-Ce
Q 006825          508 LANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDL-----SWSKS-QH  580 (630)
Q Consensus       508 svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL~GHs~~V~sL-----afSPd-~~  580 (630)
                      +++|+|+|.+|++++.|+.|                       ++|++ +++.+.++.+|.+.+...     .|+++ ++
T Consensus       172 SlswspdG~lLat~s~D~~I-----------------------rIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~  228 (568)
T PTZ00420        172 SLKWNIKGNLLSGTCVGKHM-----------------------HIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNY  228 (568)
T ss_pred             EEEECCCCCEEEEEecCCEE-----------------------EEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCE
Confidence            99999999999999999999                       88888 778889999999875433     35578 89


Q ss_pred             EEEEECCC----cEEEEeCCC-CcEEEEEecC---CceEEEE-cCCCcEEEEecce
Q 006825          581 LLSSSMDK----TVRLWHLSS-KTCLKIFSHS---DYDISLV-DRLMLRFAYGAFL  627 (630)
Q Consensus       581 LaSgS~Dg----tVrIWDl~t-g~~l~t~~H~---~~V~sVa-s~~~~~lAsgs~~  627 (630)
                      |+|++.|+    +|+|||++. ++++.++.+.   +.+.... .+.+.++++|+.+
T Consensus       229 IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD  284 (568)
T PTZ00420        229 ILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGD  284 (568)
T ss_pred             EEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECC
Confidence            99988875    799999995 6788777633   3333333 5557777777443

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.89  E-value=1.7e-20  Score=183.35  Aligned_cols=263  Identities=17%  Similarity=0.198  Sum_probs=200.4

Q ss_pred             eecCccceeEEEeec---ceEeecCCCccEecc------cCCCC--------ceeEEecCCccCCEEEEEEcCCCCeEEe
Q 006825          335 CVGHSPIVQELMRRQ---NVEEGNKDSFDLNNN------GSSGG--------GMKSKKKGSWFKSIRTVASSVTGHKERR  397 (630)
Q Consensus       335 l~GHs~~V~~Lafs~---~laSgS~D~tvr~vW------D~~tG--------~~~~~lk~gH~~~V~sVAfSpdG~~las  397 (630)
                      +...+..|.+++|.|   .-|.||+.+|.| +-      |+..+        ..+.+....|.+.|.|+||||+|++|++
T Consensus        28 ~l~dsqairav~fhp~g~lyavgsnskt~r-ic~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliat  106 (350)
T KOG0641|consen   28 ILEDSQAIRAVAFHPAGGLYAVGSNSKTFR-ICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIAT  106 (350)
T ss_pred             EecchhheeeEEecCCCceEEeccCCceEE-EEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEe
Confidence            345678899999999   678899999998 54      33221        1233444489999999999999999999


Q ss_pred             ecCCC---------CCccccC-------CcceEEEeec---CCCe---EEE-ecCCcEEEEEeCCCCcccceeeeeEecc
Q 006825          398 SSDER---------DTSSEKG-------GRRSSSATDD---SQDV---SFH-GQERVRVRQYGKSCKDLTALYKCQEIQA  454 (630)
Q Consensus       398 gS~D~---------dt~s~~g-------h~~~Vsa~~~---s~d~---l~S-gs~Dg~VriWd~~~~el~~~~~v~tL~g  454 (630)
                      |+.|+         ++....|       |...|..++|   ...+   +++ |..|.+|.+-|...++     ..+.+.|
T Consensus       107 gsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~-----~~~a~sg  181 (350)
T KOG0641|consen  107 GSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQ-----GFHALSG  181 (350)
T ss_pred             cCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCC-----cceeecC
Confidence            99998         3433333       4455554444   3333   444 4568888888876664     3678999


Q ss_pred             cCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeeccc-ccC-cccceEEEEECCCCCEEEEeeCCCeeeeecc
Q 006825          455 HNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQ-EDG-HLNMLLLANGSPEPTSLSPKHLDNHLEKKRR  532 (630)
Q Consensus       455 Ht~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~-~~g-h~~~V~svafSpdg~~lasgs~Dg~I~i~~~  532 (630)
                      |++.|.++ ++-+|-++++|++|++||.||++-..++.++-... ..| ....|..++..|.|+++++|-.|...     
T Consensus       182 htghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc-----  255 (350)
T KOG0641|consen  182 HTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSC-----  255 (350)
T ss_pred             CcccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCce-----
Confidence            99999988 45589999999999999999999888887763110 011 13568899999999999999988887     


Q ss_pred             cccccccccccCccccccEEEeC-CCCceEEeccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCCC---c-EEEEEe-
Q 006825          533 GRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSK---T-CLKIFS-  605 (630)
Q Consensus       533 ~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg---~-~l~t~~-  605 (630)
                                        .++++ .+++++.|..|+..|.++.|+|. .||+++|.|..||+-|+.-.   + .+.... 
T Consensus       256 ------------------~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~e  317 (350)
T KOG0641|consen  256 ------------------MLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAE  317 (350)
T ss_pred             ------------------EEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEe
Confidence                              78888 67899999999999999999999 99999999999999998632   2 223333 


Q ss_pred             cCCceEEEE-cCCCcEEEEecce
Q 006825          606 HSDYDISLV-DRLMLRFAYGAFL  627 (630)
Q Consensus       606 H~~~V~sVa-s~~~~~lAsgs~~  627 (630)
                      |.+.+..+. .|..+.+.+.+.+
T Consensus       318 hkdk~i~~rwh~~d~sfisssad  340 (350)
T KOG0641|consen  318 HKDKAIQCRWHPQDFSFISSSAD  340 (350)
T ss_pred             ccCceEEEEecCccceeeeccCc
Confidence            998887777 8888887776644

>PTZ00421 coronin; Provisional

Probab=99.89  E-value=6.5e-21  Score=212.89  Aligned_cols=217  Identities=18%  Similarity=0.188  Sum_probs=162.9

Q ss_pred             ceEeecCCCccEecccCCCCcee----------E---EecCCccCCEEEEEEcC-CCCeEEeecCCCCCccccCCcceEE
Q 006825          350 NVEEGNKDSFDLNNNGSSGGGMK----------S---KKKGSWFKSIRTVASSV-TGHKERRSSDERDTSSEKGGRRSSS  415 (630)
Q Consensus       350 ~laSgS~D~tvr~vWD~~tG~~~----------~---~lk~gH~~~V~sVAfSp-dG~~lasgS~D~dt~s~~gh~~~Vs  415 (630)
                      .+++++.+..+. .|+...|..+          .   .+. ||.+.|.+|+|+| ++++|                    
T Consensus        34 ~~~~~n~~~~a~-~w~~~gg~~v~~~~~~G~~~~~~~~l~-GH~~~V~~v~fsP~d~~~L--------------------   91 (493)
T PTZ00421         34 NTIACNDRFIAV-PWQQLGSTAVLKHTDYGKLASNPPILL-GQEGPIIDVAFNPFDPQKL--------------------   91 (493)
T ss_pred             CcEeECCceEEE-EEecCCceEEeeccccccCCCCCceEe-CCCCCEEEEEEcCCCCCEE--------------------
Confidence            455666666666 6665443322          1   344 7888888888887 55544                    


Q ss_pred             EeecCCCeEEEecCCcEEEEEeCCCCcccc--eeeeeEecccCcCEEEEEEccCC-CEEEEEeCCCcEEEEECcCCceee
Q 006825          416 ATDDSQDVSFHGQERVRVRQYGKSCKDLTA--LYKCQEIQAHNGSIWSIKFSLDG-RYLASAGEDCVIHVWQVVESERKG  492 (630)
Q Consensus       416 a~~~s~d~l~Sgs~Dg~VriWd~~~~el~~--~~~v~tL~gHt~~V~sVaFSpDG-~~LASgS~DgtIrVWDl~tg~~~~  492 (630)
                               ++++.|++|++|++....+..  ...+..|.+|...|.+|+|+|++ ++|+||+.|++|+|||+.+++...
T Consensus        92 ---------aSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~  162 (493)
T PTZ00421         92 ---------FTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVE  162 (493)
T ss_pred             ---------EEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEE
Confidence                     667788899999987643211  12467899999999999999975 799999999999999999988776


Q ss_pred             eeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeC-CCCceEEeccCCCC-E
Q 006825          493 ELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDD-V  570 (630)
Q Consensus       493 ~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL~GHs~~-V  570 (630)
                      .+     .+|...|.+++|+|++.+|++++.|++|                       ++|++ +++.+.++.+|... +
T Consensus       163 ~l-----~~h~~~V~sla~spdG~lLatgs~Dg~I-----------------------rIwD~rsg~~v~tl~~H~~~~~  214 (493)
T PTZ00421        163 VI-----KCHSDQITSLEWNLDGSLLCTTSKDKKL-----------------------NIIDPRDGTIVSSVEAHASAKS  214 (493)
T ss_pred             EE-----cCCCCceEEEEEECCCCEEEEecCCCEE-----------------------EEEECCCCcEEEEEecCCCCcc
Confidence            64     7899999999999999999999999999                       88888 78888999999875 4


Q ss_pred             EEEEEcCC-CeEEEEE----CCCcEEEEeCCCCc-EEEEEe-cC-CceEEEE-cCCCcEEEEec
Q 006825          571 LDLSWSKS-QHLLSSS----MDKTVRLWHLSSKT-CLKIFS-HS-DYDISLV-DRLMLRFAYGA  625 (630)
Q Consensus       571 ~sLafSPd-~~LaSgS----~DgtVrIWDl~tg~-~l~t~~-H~-~~V~sVa-s~~~~~lAsgs  625 (630)
                      ..+.|.++ .+|++++    .|++|+|||+++.. ++..+. +. ..+.... ++++..+++++
T Consensus       215 ~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lgg  278 (493)
T PTZ00421        215 QRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGS  278 (493)
T ss_pred             eEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEE
Confidence            57889988 7777654    48999999998754 555544 33 3344333 66666666554

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.89  E-value=9.5e-22  Score=213.43  Aligned_cols=204  Identities=16%  Similarity=0.128  Sum_probs=170.7

Q ss_pred             EEEEcCCCceEeeecceeeecCccceeEEEeecceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEE
Q 006825          317 KVKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQNVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKER  396 (630)
Q Consensus       317 ~l~dv~TG~~lt~eef~~l~GHs~~V~~Lafs~~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~la  396 (630)
                      .+|+-.|..++  ..|+...-.-..-.-+++...+++||+|..|| |++.+|++.++.+. .|.+.|+++|.+|.-.++.
T Consensus        38 ~IWnyetqtmV--ksfeV~~~PvRa~kfiaRknWiv~GsDD~~Ir-Vfnynt~ekV~~Fe-AH~DyIR~iavHPt~P~vL  113 (794)
T KOG0276|consen   38 QIWNYETQTMV--KSFEVSEVPVRAAKFIARKNWIVTGSDDMQIR-VFNYNTGEKVKTFE-AHSDYIRSIAVHPTLPYVL  113 (794)
T ss_pred             EEEecccceee--eeeeecccchhhheeeeccceEEEecCCceEE-EEecccceeeEEee-ccccceeeeeecCCCCeEE
Confidence            35665554444  22332222222233345556899999999999 99999999999999 9999999999999999999


Q ss_pred             eecCCC------------CCccccCCcceEEEeecCCCe---EEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEE
Q 006825          397 RSSDER------------DTSSEKGGRRSSSATDDSQDV---SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWS  461 (630)
Q Consensus       397 sgS~D~------------dt~s~~gh~~~Vsa~~~s~d~---l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~s  461 (630)
                      ++|+|-            -...+.||.+-|..++|.|.-   +++++-|++|++|.+....     +.-+|+||...|+|
T Consensus       114 tsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~-----~nfTl~gHekGVN~  188 (794)
T KOG0276|consen  114 TSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPH-----PNFTLEGHEKGVNC  188 (794)
T ss_pred             ecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCC-----CceeeeccccCcce
Confidence            999997            234499999999999999865   9999999999999886553     56789999999999


Q ss_pred             EEEccCC--CEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccc
Q 006825          462 IKFSLDG--RYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGR  534 (630)
Q Consensus       462 VaFSpDG--~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~  534 (630)
                      |.|-+-|  .+|+||+.|.+|||||.++..|+++|     .||...|..+.|+|.-.+|++|+.||++++|....
T Consensus       189 Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TL-----eGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~T  258 (794)
T KOG0276|consen  189 VDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTL-----EGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKT  258 (794)
T ss_pred             EEeccCCCcceEEecCCCceEEEeecchHHHHHHh-----hcccccceEEEecCCCcEEEEecCCccEEEecCcc
Confidence            9998844  69999999999999999999999995     99999999999999999999999999996665443

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.88  E-value=2.8e-21  Score=212.14  Aligned_cols=247  Identities=14%  Similarity=0.134  Sum_probs=210.9

Q ss_pred             EEeeecCCCceeEEEEcCCCceEeeecceeeecCccceeE-EEeec----ceEeecCCCccEecccCCCCceeEEecCCc
Q 006825          305 VVNEIQEDGTWKKVKEVGTGRQLTIEEFEMCVGHSPIVQE-LMRRQ----NVEEGNKDSFDLNNNGSSGGGMKSKKKGSW  379 (630)
Q Consensus       305 ~v~e~~~dg~~~~l~dv~TG~~lt~eef~~l~GHs~~V~~-Lafs~----~laSgS~D~tvr~vWD~~tG~~~~~lk~gH  379 (630)
                      .+...+.||+ .++|+...++.+   +.+.+.||.+.|.. +++-+    .|+.|++|.++. +|...++..+.+|+ ||
T Consensus        27 ~i~s~sRd~t-~~vw~~~~~~~l---~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~-v~~~~~~~P~~~Lk-gH  100 (745)
T KOG0301|consen   27 CIISGSRDGT-VKVWAKKGKQYL---ETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTII-VFKLSQAEPLYTLK-GH  100 (745)
T ss_pred             EEeecCCCCc-eeeeeccCcccc---cceecccCcceeeccceeccccCcceEeecccceEE-EEecCCCCchhhhh-cc
Confidence            3445566777 779998877777   44567788888776 77765    599999999999 99999999999999 99


Q ss_pred             cCCEEEEEEcCCCCeEEeecCCCC---------CccccCCcceEEEeecCCCe-EEEecCCcEEEEEeCCCCcccceeee
Q 006825          380 FKSIRTVASSVTGHKERRSSDERD---------TSSEKGGRRSSSATDDSQDV-SFHGQERVRVRQYGKSCKDLTALYKC  449 (630)
Q Consensus       380 ~~~V~sVAfSpdG~~lasgS~D~d---------t~s~~gh~~~Vsa~~~s~d~-l~Sgs~Dg~VriWd~~~~el~~~~~v  449 (630)
                      ...|.+++.--++. +++||-|..         ...+.+|+..|+++..-+.. +++|+.|.+|++|.-.+       ++
T Consensus       101 ~snVC~ls~~~~~~-~iSgSWD~TakvW~~~~l~~~l~gH~asVWAv~~l~e~~~vTgsaDKtIklWk~~~-------~l  172 (745)
T KOG0301|consen  101 KSNVCSLSIGEDGT-LISGSWDSTAKVWRIGELVYSLQGHTASVWAVASLPENTYVTGSADKTIKLWKGGT-------LL  172 (745)
T ss_pred             ccceeeeecCCcCc-eEecccccceEEecchhhhcccCCcchheeeeeecCCCcEEeccCcceeeeccCCc-------hh
Confidence            99999988877877 899999972         12389999999999988887 99999999999997522       57


Q ss_pred             eEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeee
Q 006825          450 QEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEK  529 (630)
Q Consensus       450 ~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i  529 (630)
                      ++|.||++.|+.+++-+++. |+|++.||.||+|++ +|+++.++     .+|...|+++...+.+..+++++.|+++  
T Consensus       173 ~tf~gHtD~VRgL~vl~~~~-flScsNDg~Ir~w~~-~ge~l~~~-----~ghtn~vYsis~~~~~~~Ivs~gEDrtl--  243 (745)
T KOG0301|consen  173 KTFSGHTDCVRGLAVLDDSH-FLSCSNDGSIRLWDL-DGEVLLEM-----HGHTNFVYSISMALSDGLIVSTGEDRTL--  243 (745)
T ss_pred             hhhccchhheeeeEEecCCC-eEeecCCceEEEEec-cCceeeee-----eccceEEEEEEecCCCCeEEEecCCceE--
Confidence            89999999999999998765 889999999999999 78888884     8999999999988888899999999999  


Q ss_pred             ecccccccccccccCccccccEEEeCCCCceEEeccCCCCEEEEEEcCCCeEEEEECCCcEEEEeCC
Q 006825          530 KRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKSQHLLSSSMDKTVRLWHLS  596 (630)
Q Consensus       530 ~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL~GHs~~V~sLafSPd~~LaSgS~DgtVrIWDl~  596 (630)
                                           ++|... ++.+.+.-.+-.|+++.+-+++-+++|+.||.||||-..
T Consensus       244 ---------------------riW~~~-e~~q~I~lPttsiWsa~~L~NgDIvvg~SDG~VrVfT~~  288 (745)
T KOG0301|consen  244 ---------------------RIWKKD-ECVQVITLPTTSIWSAKVLLNGDIVVGGSDGRVRVFTVD  288 (745)
T ss_pred             ---------------------EEeecC-ceEEEEecCccceEEEEEeeCCCEEEeccCceEEEEEec
Confidence                                 566654 677777766668999999888899999999999999775

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.88  E-value=1.6e-21  Score=193.59  Aligned_cols=225  Identities=17%  Similarity=0.193  Sum_probs=182.0

Q ss_pred             cceeEEEeec----ceEeecCCCccEecccCCC-CceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceE
Q 006825          340 PIVQELMRRQ----NVEEGNKDSFDLNNNGSSG-GGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSS  414 (630)
Q Consensus       340 ~~V~~Lafs~----~laSgS~D~tvr~vWD~~t-G~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~V  414 (630)
                      +.+-.+++++    .+++++.|+++| +||..- -..++++| .|.+.|.+|.+.+.-.                     
T Consensus        61 D~LfdV~Wse~~e~~~~~a~GDGSLr-l~d~~~~s~Pi~~~k-EH~~EV~Svdwn~~~r---------------------  117 (311)
T KOG0277|consen   61 DGLFDVAWSENHENQVIAASGDGSLR-LFDLTMPSKPIHKFK-EHKREVYSVDWNTVRR---------------------  117 (311)
T ss_pred             cceeEeeecCCCcceEEEEecCceEE-EeccCCCCcchhHHH-hhhhheEEeccccccc---------------------
Confidence            4456677777    688999999999 999532 45788888 8999999998887422                     


Q ss_pred             EEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEcc-CCCEEEEEeCCCcEEEEECcCCceeee
Q 006825          415 SATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSL-DGRYLASAGEDCVIHVWQVVESERKGE  493 (630)
Q Consensus       415 sa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSp-DG~~LASgS~DgtIrVWDl~tg~~~~~  493 (630)
                             ..+++++.|++|++|+..-+.     .++++.||...|+..+|+| .+++++++|.|+++++||++.......
T Consensus       118 -------~~~ltsSWD~TiKLW~~~r~~-----Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~  185 (311)
T KOG0277|consen  118 -------RIFLTSSWDGTIKLWDPNRPN-----SVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMS  185 (311)
T ss_pred             -------eeEEeeccCCceEeecCCCCc-----ceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeE
Confidence                   224667999999999976553     5889999999999999999 789999999999999999976533333


Q ss_pred             eecccccCcccceEEEEECC-CCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeC--CCCceEEeccCCCCE
Q 006825          494 LLEKQEDGHLNMLLLANGSP-EPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL--SDKPICSFQGHLDDV  570 (630)
Q Consensus       494 l~~~~~~gh~~~V~svafSp-dg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl--sgk~l~tL~GHs~~V  570 (630)
                      +     ..|...+.++.|+. +..++++++.|+.|                       +.||+  -..++.+|.||.-.|
T Consensus       186 i-----~ah~~Eil~cdw~ky~~~vl~Tg~vd~~v-----------------------r~wDir~~r~pl~eL~gh~~AV  237 (311)
T KOG0277|consen  186 I-----EAHNSEILCCDWSKYNHNVLATGGVDNLV-----------------------RGWDIRNLRTPLFELNGHGLAV  237 (311)
T ss_pred             E-----EeccceeEeecccccCCcEEEecCCCceE-----------------------EEEehhhccccceeecCCceEE
Confidence            2     67888899999986 47889999999999                       77777  357899999999999


Q ss_pred             EEEEEcCC--CeEEEEECCCcEEEEeCCC-CcEEEEEe-cCCceEEEE--cCCCcEEEEecce
Q 006825          571 LDLSWSKS--QHLLSSSMDKTVRLWHLSS-KTCLKIFS-HSDYDISLV--DRLMLRFAYGAFL  627 (630)
Q Consensus       571 ~sLafSPd--~~LaSgS~DgtVrIWDl~t-g~~l~t~~-H~~~V~sVa--s~~~~~lAsgs~~  627 (630)
                      ..|+|||.  .+|+|+|.|-|+||||... ..++.++. |+..|..+.  .-....+|+-+.+
T Consensus       238 Rkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWD  300 (311)
T KOG0277|consen  238 RKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWD  300 (311)
T ss_pred             EEEecCcchhhHhhhccccceEEecccccchhhhhhhhccceEEeccccccccCceeeecccc
Confidence            99999998  8999999999999999984 46777777 888887777  2244455554443

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.88  E-value=4.6e-21  Score=188.59  Aligned_cols=239  Identities=15%  Similarity=0.130  Sum_probs=201.9

Q ss_pred             ceeEEEEcCCCceEeeecceeeecCccceeEEEeec---ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcC
Q 006825          314 TWKKVKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSV  390 (630)
Q Consensus       314 ~~~~l~dv~TG~~lt~eef~~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSp  390 (630)
                      .+.+||.+-.|..|     ++..||..-|..++.+.   .+++++.|+.+. +||++||+..++++ ||...|++|+|..
T Consensus        39 rtvrLWNp~rg~li-----ktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~-vwDV~TGkv~Rr~r-gH~aqVNtV~fNe  111 (307)
T KOG0316|consen   39 RTVRLWNPLRGALI-----KTYSGHGHEVLDAALSSDNSKFASCGGDKAVQ-VWDVNTGKVDRRFR-GHLAQVNTVRFNE  111 (307)
T ss_pred             ceEEeeccccccee-----eeecCCCceeeeccccccccccccCCCCceEE-EEEcccCeeeeecc-cccceeeEEEecC
Confidence            46899999999999     99999999999988876   899999999999 99999999999999 9999999999999


Q ss_pred             CCCeEEeecCCCC-------------CccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCc
Q 006825          391 TGHKERRSSDERD-------------TSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNG  457 (630)
Q Consensus       391 dG~~lasgS~D~d-------------t~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~  457 (630)
                      +...+++|+.|..             ...+..-...|..+.....-+++|+.||++|.||+..+.+..     .+.|  .
T Consensus       112 esSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~heIvaGS~DGtvRtydiR~G~l~s-----Dy~g--~  184 (307)
T KOG0316|consen  112 ESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAEHEIVAGSVDGTVRTYDIRKGTLSS-----DYFG--H  184 (307)
T ss_pred             cceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEecccEEEeeccCCcEEEEEeecceeeh-----hhcC--C
Confidence            9999999999971             112455566788888888889999999999999998775422     2233  4


Q ss_pred             CEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceE--EEEECCCCCEEEEeeCCCeeeeeccccc
Q 006825          458 SIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLL--LANGSPEPTSLSPKHLDNHLEKKRRGRS  535 (630)
Q Consensus       458 ~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~--svafSpdg~~lasgs~Dg~I~i~~~~~~  535 (630)
                      +|+++.|++||+.+..++.|.+||+.|-.+|+.++.     +.||.+.-+  ..++......+++|+.||.+        
T Consensus       185 pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~s-----YkGhkn~eykldc~l~qsdthV~sgSEDG~V--------  251 (307)
T KOG0316|consen  185 PITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKS-----YKGHKNMEYKLDCCLNQSDTHVFSGSEDGKV--------  251 (307)
T ss_pred             cceeEEecCCCCEEEEeeccceeeecccchhHHHHH-----hcccccceeeeeeeecccceeEEeccCCceE--------
Confidence            799999999999999999999999999999998877     588877655  44566678899999999999        


Q ss_pred             ccccccccCccccccEEEeC-CCCceEEeccCCCC-EEEEEEcCC-CeEEEEECCCcEEEEeC
Q 006825          536 INRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDD-VLDLSWSKS-QHLLSSSMDKTVRLWHL  595 (630)
Q Consensus       536 ~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL~GHs~~-V~sLafSPd-~~LaSgS~DgtVrIWDl  595 (630)
                                     .+|++ .+..+..+..|... |.+|+++|. ..|+++. ++.+.+|--
T Consensus       252 ---------------y~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~-~~~~~~~~~  298 (307)
T KOG0316|consen  252 ---------------YFWDLVDETQISKLSVVSTVIVTDLSCHPTMDDFITAT-GHGDLFWYQ  298 (307)
T ss_pred             ---------------EEEEeccceeeeeeccCCceeEEeeecccCccceeEec-CCceeceee
Confidence                           88888 77788888888877 899999998 5555554 455667753

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=99.88  E-value=7.9e-22  Score=209.45  Aligned_cols=255  Identities=15%  Similarity=0.170  Sum_probs=203.8

Q ss_pred             CCcEEEEeeecCCCceeEEEEcCC-CceEeeecceeeecCccceeEEEeec---ceEeecCCCccEecccCCCCceeEEe
Q 006825          300 NGKEFVVNEIQEDGTWKKVKEVGT-GRQLTIEEFEMCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKK  375 (630)
Q Consensus       300 dG~~~~v~e~~~dg~~~~l~dv~T-G~~lt~eef~~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~l  375 (630)
                      .|+.|+  ..+.|+. ..||++-. +++|     .++.||+..|..++|++   .+.|+|.|++++ +||++||+++.++
T Consensus       226 ~~hLlL--S~gmD~~-vklW~vy~~~~~l-----rtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lK-lwDtETG~~~~~f  296 (503)
T KOG0282|consen  226 KGHLLL--SGGMDGL-VKLWNVYDDRRCL-----RTFKGHRKPVRDASFNNCGTSFLSASFDRFLK-LWDTETGQVLSRF  296 (503)
T ss_pred             eeeEEE--ecCCCce-EEEEEEecCccee-----hhhhcchhhhhhhhccccCCeeeeeecceeee-eeccccceEEEEE
Confidence            555454  3444665 67999975 8888     99999999999999999   788999999999 9999999999988


Q ss_pred             cCCccCCEEEEEEcCCC-CeEEeecCCC-----CCcc------ccCCcceEEEeecCCCe--EEEecCCcEEEEEeCCCC
Q 006825          376 KGSWFKSIRTVASSVTG-HKERRSSDER-----DTSS------EKGGRRSSSATDDSQDV--SFHGQERVRVRQYGKSCK  441 (630)
Q Consensus       376 k~gH~~~V~sVAfSpdG-~~lasgS~D~-----dt~s------~~gh~~~Vsa~~~s~d~--l~Sgs~Dg~VriWd~~~~  441 (630)
                      ..+  ..+.+|.|.||+ +.+..|..|+     |...      -..|-..|..+.|-..+  +++.++|+.|++|+....
T Consensus       297 ~~~--~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~  374 (503)
T KOG0282|consen  297 HLD--KVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIP  374 (503)
T ss_pred             ecC--CCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCC
Confidence            754  347789999998 5666666665     3222      34467778888888777  899999999999998765


Q ss_pred             cccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccCccc--ceEEEEECCCCCEEE
Q 006825          442 DLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLN--MLLLANGSPEPTSLS  519 (630)
Q Consensus       442 el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~--~V~svafSpdg~~la  519 (630)
                      -..  .  ..+.-+....-+|..+|++.+++.-+.|..|-|+.+........  ...+.||..  .-..+.|+|||.+|+
T Consensus       375 v~i--k--~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nk--kK~feGh~vaGys~~v~fSpDG~~l~  448 (503)
T KOG0282|consen  375 VPI--K--NIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNK--KKRFEGHSVAGYSCQVDFSPDGRTLC  448 (503)
T ss_pred             ccc--h--hhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCH--hhhhcceeccCceeeEEEcCCCCeEE
Confidence            321  1  22333444577899999999999999999999999754433221  233678864  345789999999999


Q ss_pred             EeeCCCeeeeecccccccccccccCccccccEEEeC-CCCceEEeccCCCCEEEEEEcCC--CeEEEEECCCcEEEEe
Q 006825          520 PKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSWSKS--QHLLSSSMDKTVRLWH  594 (630)
Q Consensus       520 sgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL~GHs~~V~sLafSPd--~~LaSgS~DgtVrIWD  594 (630)
                      +|..+|.+                       .+|+. +-+.+..+++|.+.+..+.|+|.  ..+||++.||.|+|||
T Consensus       449 SGdsdG~v-----------------------~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd  503 (503)
T KOG0282|consen  449 SGDSDGKV-----------------------NFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD  503 (503)
T ss_pred             eecCCccE-----------------------EEeechhhhhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence            99999999                       77777 67889999999999999999997  8999999999999996

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.88  E-value=6.5e-23  Score=208.43  Aligned_cols=185  Identities=21%  Similarity=0.293  Sum_probs=160.2

Q ss_pred             EecCCccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccce---eeee
Q 006825          374 KKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTAL---YKCQ  450 (630)
Q Consensus       374 ~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~---~~v~  450 (630)
                      ..|.|....+.|..|||||+||+                             +|+.||-|-+|+..++++..-   ....
T Consensus       207 ~IKFg~KSh~EcA~FSPDgqyLv-----------------------------sgSvDGFiEVWny~~GKlrKDLkYQAqd  257 (508)
T KOG0275|consen  207 SIKFGQKSHVECARFSPDGQYLV-----------------------------SGSVDGFIEVWNYTTGKLRKDLKYQAQD  257 (508)
T ss_pred             heecccccchhheeeCCCCceEe-----------------------------eccccceeeeehhccchhhhhhhhhhhc
Confidence            34457777888888999888885                             456677899999887765421   1123


Q ss_pred             EecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeee
Q 006825          451 EIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKK  530 (630)
Q Consensus       451 tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~  530 (630)
                      .|.-|..+|.||.|+.|...||||+.||.||||.+.+|.|++.+    ...|...|.++.|+.|+..+++++.|.++   
T Consensus       258 ~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrF----drAHtkGvt~l~FSrD~SqiLS~sfD~tv---  330 (508)
T KOG0275|consen  258 NFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRF----DRAHTKGVTCLSFSRDNSQILSASFDQTV---  330 (508)
T ss_pred             ceeecccceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHh----hhhhccCeeEEEEccCcchhhcccccceE---
Confidence            45668999999999999999999999999999999999999987    47999999999999999999999999999   


Q ss_pred             cccccccccccccCccccccEEEeC-CCCceEEeccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCCCcEEEEEe---
Q 006825          531 RRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS---  605 (630)
Q Consensus       531 ~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg~~l~t~~---  605 (630)
                                          ++..+ +|++++.|.||+..|+...|.++ .+++++|.||+|++|+.++.+|+.+|+   
T Consensus       331 --------------------RiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~  390 (508)
T KOG0275|consen  331 --------------------RIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLG  390 (508)
T ss_pred             --------------------EEeccccchhHHHhcCccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCC
Confidence                                77777 89999999999999999999999 999999999999999999999999997   


Q ss_pred             cCCceEEEE
Q 006825          606 HSDYDISLV  614 (630)
Q Consensus       606 H~~~V~sVa  614 (630)
                      ....|.+|.
T Consensus       391 ~d~~vnsv~  399 (508)
T KOG0275|consen  391 TDYPVNSVI  399 (508)
T ss_pred             CcccceeEE
Confidence            455677766

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.88  E-value=6.2e-22  Score=215.90  Aligned_cols=221  Identities=17%  Similarity=0.240  Sum_probs=184.3

Q ss_pred             ceEeecCCCccEecccCCCCc------eeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCe
Q 006825          350 NVEEGNKDSFDLNNNGSSGGG------MKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDV  423 (630)
Q Consensus       350 ~laSgS~D~tvr~vWD~~tG~------~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~  423 (630)
                      +|.||+.|+++| +|++..-.      .+.++. .|...|+.++.--+|+.                             
T Consensus        39 yLfTgGRDg~i~-~W~~~~d~~~~s~~~~asme-~HsDWVNDiiL~~~~~t-----------------------------   87 (735)
T KOG0308|consen   39 YLFTGGRDGIIR-LWSVTQDSNEPSTPYIASME-HHSDWVNDIILCGNGKT-----------------------------   87 (735)
T ss_pred             eEEecCCCceEE-EeccccccCCcccchhhhhh-hhHhHHhhHHhhcCCCc-----------------------------
Confidence            589999999999 99875422      355566 67777777666655543                             


Q ss_pred             EEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEE-ccCCCEEEEEeCCCcEEEEECcCCce--eee---eecc
Q 006825          424 SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKF-SLDGRYLASAGEDCVIHVWQVVESER--KGE---LLEK  497 (630)
Q Consensus       424 l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaF-SpDG~~LASgS~DgtIrVWDl~tg~~--~~~---l~~~  497 (630)
                      +++++.|.+|++|+.....   .+|..+|..|++.|.||++ -++..++||||.|+.|.|||++++..  +..   +...
T Consensus        88 lIS~SsDtTVK~W~~~~~~---~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~  164 (735)
T KOG0308|consen   88 LISASSDTTVKVWNAHKDN---TFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVN  164 (735)
T ss_pred             eEEecCCceEEEeecccCc---chhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccc
Confidence            4677788899999986442   3578899999999999999 78999999999999999999998743  111   1111


Q ss_pred             cc-cCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeC-CCCceEEeccCCCCEEEEEE
Q 006825          498 QE-DGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSW  575 (630)
Q Consensus       498 ~~-~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL~GHs~~V~sLaf  575 (630)
                      .. .|+...|++++..+.|..|++|+..+.+                       ++|+. +++.+..|.||++-|.+|..
T Consensus       165 sl~sG~k~siYSLA~N~t~t~ivsGgtek~l-----------------------r~wDprt~~kimkLrGHTdNVr~ll~  221 (735)
T KOG0308|consen  165 SLGSGPKDSIYSLAMNQTGTIIVSGGTEKDL-----------------------RLWDPRTCKKIMKLRGHTDNVRVLLV  221 (735)
T ss_pred             cCCCCCccceeeeecCCcceEEEecCcccce-----------------------EEeccccccceeeeeccccceEEEEE
Confidence            12 3888999999999999999999999998                       88888 88899999999999999999


Q ss_pred             cCC-CeEEEEECCCcEEEEeCCCCcEEEEEe-cCCceEEEE-cCCCcEEEEecce
Q 006825          576 SKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYDISLV-DRLMLRFAYGAFL  627 (630)
Q Consensus       576 SPd-~~LaSgS~DgtVrIWDl~tg~~l~t~~-H~~~V~sVa-s~~~~~lAsgs~~  627 (630)
                      ++| ..++|+|.||+|||||+...+|+.+|. |...||++. ++....+.+|+..
T Consensus       222 ~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~vYsG~rd  276 (735)
T KOG0308|consen  222 NDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSFTHVYSGGRD  276 (735)
T ss_pred             cCCCCeEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCCCcceEEecCCC
Confidence            999 899999999999999999999999999 999999999 8777777777644

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.88  E-value=9.4e-22  Score=195.19  Aligned_cols=215  Identities=18%  Similarity=0.189  Sum_probs=180.2

Q ss_pred             CCceeEEEEcC-CCceEeeecceeeecCccceeEEEeec----ceEeecCCCccEecccCCCCceeEEecCCccCCEEEE
Q 006825          312 DGTWKKVKEVG-TGRQLTIEEFEMCVGHSPIVQELMRRQ----NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTV  386 (630)
Q Consensus       312 dg~~~~l~dv~-TG~~lt~eef~~l~GHs~~V~~Lafs~----~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sV  386 (630)
                      ||. .+|||.. ...+|     ..+..|..-|.++-+.+    .++++|+|+||+ +|+...++.+.+++ ||...|..+
T Consensus        82 DGS-Lrl~d~~~~s~Pi-----~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiK-LW~~~r~~Sv~Tf~-gh~~~Iy~a  153 (311)
T KOG0277|consen   82 DGS-LRLFDLTMPSKPI-----HKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIK-LWDPNRPNSVQTFN-GHNSCIYQA  153 (311)
T ss_pred             Cce-EEEeccCCCCcch-----hHHHhhhhheEEeccccccceeEEeeccCCceE-eecCCCCcceEeec-CCccEEEEE
Confidence            565 4577743 23344     88899999999998877    677889999999 99999999999999 999999999


Q ss_pred             EEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEcc
Q 006825          387 ASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSL  466 (630)
Q Consensus       387 AfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSp  466 (630)
                      +|+|.                            .++.+++++.|+++++||++...     ..+.+..|...|.|+.|+.
T Consensus       154 ~~sp~----------------------------~~nlfas~Sgd~~l~lwdvr~~g-----k~~~i~ah~~Eil~cdw~k  200 (311)
T KOG0277|consen  154 AFSPH----------------------------IPNLFASASGDGTLRLWDVRSPG-----KFMSIEAHNSEILCCDWSK  200 (311)
T ss_pred             ecCCC----------------------------CCCeEEEccCCceEEEEEecCCC-----ceeEEEeccceeEeecccc
Confidence            99994                            34557888999999999986542     2344899999999999998


Q ss_pred             -CCCEEEEEeCCCcEEEEECcCCc-eeeeeecccccCcccceEEEEECCC-CCEEEEeeCCCeeeeeccccccccccccc
Q 006825          467 -DGRYLASAGEDCVIHVWQVVESE-RKGELLEKQEDGHLNMLLLANGSPE-PTSLSPKHLDNHLEKKRRGRSINRKSLSL  543 (630)
Q Consensus       467 -DG~~LASgS~DgtIrVWDl~tg~-~~~~l~~~~~~gh~~~V~svafSpd-g~~lasgs~Dg~I~i~~~~~~~~~~s~s~  543 (630)
                       +.+.|+||+.|+.||+||++.-+ .+.+     +.+|.-.|..+.|+|- ..+|++++.|-++                
T Consensus       201 y~~~vl~Tg~vd~~vr~wDir~~r~pl~e-----L~gh~~AVRkvk~Sph~~~lLaSasYDmT~----------------  259 (311)
T KOG0277|consen  201 YNHNVLATGGVDNLVRGWDIRNLRTPLFE-----LNGHGLAVRKVKFSPHHASLLASASYDMTV----------------  259 (311)
T ss_pred             cCCcEEEecCCCceEEEEehhhcccccee-----ecCCceEEEEEecCcchhhHhhhccccceE----------------
Confidence             78899999999999999998654 2333     4899999999999997 6788999999999                


Q ss_pred             CccccccEEEeC--CCCceEEeccCCCCEEEEEEcCC--CeEEEEECCCcEEEEeC
Q 006825          544 DHMVVPETVFAL--SDKPICSFQGHLDDVLDLSWSKS--QHLLSSSMDKTVRLWHL  595 (630)
Q Consensus       544 d~~i~~~~Vwdl--sgk~l~tL~GHs~~V~sLafSPd--~~LaSgS~DgtVrIWDl  595 (630)
                             +||+.  ...++.+..-|+.-|..+.|++-  +++|+.+.|..++||+.
T Consensus       260 -------riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p  308 (311)
T KOG0277|consen  260 -------RIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP  308 (311)
T ss_pred             -------EecccccchhhhhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence                   66665  33456677789999999999985  99999999999999984

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.87  E-value=7.7e-21  Score=209.92  Aligned_cols=244  Identities=15%  Similarity=0.116  Sum_probs=210.8

Q ss_pred             eeEEEEcCCCceEeeecceeeecCccceeEEEeec---ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCC
Q 006825          315 WKKVKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVT  391 (630)
Q Consensus       315 ~~~l~dv~TG~~lt~eef~~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpd  391 (630)
                      ...+|...|++++     .++.  ...+.+..|-|   +++.|..-+.+. ++|+++...+-+.+ .|.+.|.+++.+||
T Consensus       395 SikiWn~~t~kci-----RTi~--~~y~l~~~Fvpgd~~Iv~G~k~Gel~-vfdlaS~~l~Eti~-AHdgaIWsi~~~pD  465 (888)
T KOG0306|consen  395 SIKIWNRDTLKCI-----RTIT--CGYILASKFVPGDRYIVLGTKNGELQ-VFDLASASLVETIR-AHDGAIWSISLSPD  465 (888)
T ss_pred             cEEEEEccCccee-----EEec--cccEEEEEecCCCceEEEeccCCceE-EEEeehhhhhhhhh-ccccceeeeeecCC
Confidence            4679999999998     5544  23777788888   899999999999 99999999999988 99999999999999


Q ss_pred             CCeEEeecCCCCC--------ccccC---------------CcceEEEeecCCCe--EEEecCCcEEEEEeCCCCcccce
Q 006825          392 GHKERRSSDERDT--------SSEKG---------------GRRSSSATDDSQDV--SFHGQERVRVRQYGKSCKDLTAL  446 (630)
Q Consensus       392 G~~lasgS~D~dt--------~s~~g---------------h~~~Vsa~~~s~d~--l~Sgs~Dg~VriWd~~~~el~~~  446 (630)
                      ++.+++||.|+..        ....|               -...|.|+.++|++  ++.+--|.+|++|=+.+-.+   
T Consensus       466 ~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKF---  542 (888)
T KOG0306|consen  466 NKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKF---  542 (888)
T ss_pred             CCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceee---
Confidence            9999999999810        00111               23468899999998  88888999999998765542   


Q ss_pred             eeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCe
Q 006825          447 YKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNH  526 (630)
Q Consensus       447 ~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~  526 (630)
                        --.|.||.-+|.||.+|||+++|+|||.|++||||-+.=|.|.+.+     -+|...|.++.|.|+...+.+++.|+.
T Consensus       543 --flsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~-----fAHdDSvm~V~F~P~~~~FFt~gKD~k  615 (888)
T KOG0306|consen  543 --FLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSF-----FAHDDSVMSVQFLPKTHLFFTCGKDGK  615 (888)
T ss_pred             --eeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhh-----hcccCceeEEEEcccceeEEEecCcce
Confidence              4579999999999999999999999999999999999989888874     799999999999999999999999999


Q ss_pred             eeeecccccccccccccCccccccEEEeC-CCCceEEeccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCCCcE
Q 006825          527 LEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTC  600 (630)
Q Consensus       527 I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg~~  600 (630)
                      |                       +-||. .-+.+++|.||...|+|++.+|+ .+++|+|.|.+||+|.......
T Consensus       616 v-----------------------KqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE~tde~~  668 (888)
T KOG0306|consen  616 V-----------------------KQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWERTDEIL  668 (888)
T ss_pred             E-----------------------EeechhhhhhheeeccchheeeeeEEcCCCCeEEeccCCceeEeeeccCcce
Confidence            9                       56665 55789999999999999999999 8999999999999998765433

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.86  E-value=1.7e-20  Score=197.02  Aligned_cols=245  Identities=16%  Similarity=0.154  Sum_probs=204.4

Q ss_pred             eeEEEEcCCCceEeeecceeeecCccceeEEEeec---ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCC
Q 006825          315 WKKVKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVT  391 (630)
Q Consensus       315 ~~~l~dv~TG~~lt~eef~~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpd  391 (630)
                      ...+.|-.+++.|     .+|.||+-.|..+-|.|   .++++|.|..+| +|.+-...+....+ .|...|+.+...|.
T Consensus       242 ~av~~d~~s~q~l-----~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~-vws~~~~s~~~~~~-~h~~~V~~ls~h~t  314 (506)
T KOG0289|consen  242 TAVLFDKPSNQIL-----ATLKGHTKKITSVKFHKDLDTVITASADEIIR-VWSVPLSSEPTSSR-PHEEPVTGLSLHPT  314 (506)
T ss_pred             ceEEEecchhhhh-----hhccCcceEEEEEEeccchhheeecCCcceEE-eeccccccCccccc-cccccceeeeeccC
Confidence            3567787888888     99999999999999999   688999999999 99998877777777 89999999999999


Q ss_pred             CCeEEeecCCC-----C--Ccc------ccCCcceEEEeecCCCe--EEEecCCcEEEEEeCCCCcccceeeeeEecccC
Q 006825          392 GHKERRSSDER-----D--TSS------EKGGRRSSSATDDSQDV--SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHN  456 (630)
Q Consensus       392 G~~lasgS~D~-----d--t~s------~~gh~~~Vsa~~~s~d~--l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt  456 (630)
                      |.|+.+.++|+     +  ++.      ..+....+++.+|.+|+  +.+|..|+.|++||++...     .+..|.+|+
T Consensus       315 geYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~-----~~a~Fpght  389 (506)
T KOG0289|consen  315 GEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQT-----NVAKFPGHT  389 (506)
T ss_pred             CcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCcc-----ccccCCCCC
Confidence            99999999998     1  111      22334568999999999  6789999999999998765     356789999


Q ss_pred             cCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccc
Q 006825          457 GSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSI  536 (630)
Q Consensus       457 ~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~  536 (630)
                      ++|..|+|+.+|-|||++.+|+.|++||++.-+..+++.    ......+.++.|.+.|++++.++.+-.|.+.+...  
T Consensus       390 ~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~----l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~--  463 (506)
T KOG0289|consen  390 GPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQ----LDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKT--  463 (506)
T ss_pred             CceeEEEeccCceEEEEEecCCeEEEEEehhhcccceee----ccccccceeEEEcCCCCeEEeecceeEEEEEeccc--
Confidence            999999999999999999999999999999887766653    33334789999999999999997777763332211  


Q ss_pred             cccccccCccccccEEEeCCCCceEEeccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeC
Q 006825          537 NRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHL  595 (630)
Q Consensus       537 ~~~s~s~d~~i~~~~Vwdlsgk~l~tL~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl  595 (630)
                                    +    ...++.++.-|.+..+.+.|... ++|+++|+|..++|+-+
T Consensus       464 --------------k----~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~  505 (506)
T KOG0289|consen  464 --------------K----SWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL  505 (506)
T ss_pred             --------------c----cceeeehhhhcccccceeeecccceEEeeccchhheEEeec
Confidence                          1    22466777889999999999888 99999999999998754

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.86  E-value=3.6e-22  Score=219.74  Aligned_cols=235  Identities=18%  Similarity=0.186  Sum_probs=206.0

Q ss_pred             ecceeeecCccceeEEEeec---ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCcc
Q 006825          330 EEFEMCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSS  406 (630)
Q Consensus       330 eef~~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s  406 (630)
                      -+++.+.-|+..|.++..+.   .+++|++|-.+- +|.+.....+..+. +|...|.+|-|.+...+|           
T Consensus        19 ~~~~~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~-L~~i~kp~~i~S~~-~hespIeSl~f~~~E~Ll-----------   85 (825)
T KOG0267|consen   19 WDTREFVAHSAAVGCLKIRKSSRSLVTGGEDEKVN-LWAIGKPNAITSLT-GHESPIESLTFDTSERLL-----------   85 (825)
T ss_pred             ccchhhhhhhhhhceeeeeccceeeccCCCceeec-cccccCCchhheee-ccCCcceeeecCcchhhh-----------
Confidence            44566677888888887544   789999999998 99988777777788 999999999999875444           


Q ss_pred             ccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECc
Q 006825          407 EKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVV  486 (630)
Q Consensus       407 ~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~  486 (630)
                                        ++|+.+|+|++||+....     .+++|.||...+..|+|+|-|.|.|+|+.|+.+++||++
T Consensus        86 ------------------aagsasgtiK~wDleeAk-----~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~R  142 (825)
T KOG0267|consen   86 ------------------AAGSASGTIKVWDLEEAK-----IVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIR  142 (825)
T ss_pred             ------------------cccccCCceeeeehhhhh-----hhhhhhccccCcceeeeccceEEeccccccccceehhhh
Confidence                              567788999999997543     468999999999999999999999999999999999999


Q ss_pred             CCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeC-CCCceEEecc
Q 006825          487 ESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQG  565 (630)
Q Consensus       487 tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL~G  565 (630)
                      ...+...     +.+|...|..++|+|+|++++.++.|.++                       +||++ .|+.+.+|.+
T Consensus       143 k~Gc~~~-----~~s~~~vv~~l~lsP~Gr~v~~g~ed~tv-----------------------ki~d~~agk~~~ef~~  194 (825)
T KOG0267|consen  143 KKGCSHT-----YKSHTRVVDVLRLSPDGRWVASGGEDNTV-----------------------KIWDLTAGKLSKEFKS  194 (825)
T ss_pred             ccCceee-----ecCCcceeEEEeecCCCceeeccCCccee-----------------------eeeccccccccccccc
Confidence            7777777     47899999999999999999999999999                       88998 7899999999


Q ss_pred             CCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCCCcEEEEEe-cCCceEEEE-cCCCcEEEEeccee
Q 006825          566 HLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYDISLV-DRLMLRFAYGAFLN  628 (630)
Q Consensus       566 Hs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg~~l~t~~-H~~~V~sVa-s~~~~~lAsgs~~n  628 (630)
                      |...|..+.|+|. -+|++||.|++|++||+++.+.+...+ ....|.|++ ++.+..+.+|-.++
T Consensus       195 ~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~~~~v~~~~fn~~~~~~~~G~q~s  260 (825)
T KOG0267|consen  195 HEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPETDGVRSLAFNPDGKIVLSGEQIS  260 (825)
T ss_pred             ccccccccccCchhhhhccCCCCceeeeeccceeEEeeccCCccCCceeeeecCCceeeecCchhh
Confidence            9999999999998 788899999999999999998888777 788899999 88888888876544

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.86  E-value=2.2e-19  Score=183.18  Aligned_cols=261  Identities=14%  Similarity=0.129  Sum_probs=198.8

Q ss_pred             cccCCCceeecCCCCcccCCCccccccCCCCCcccccccEEEEECCCCcEEEEeeecCCCc-------------------
Q 006825          254 DESRGDSMSINGNGNYIGNSGEVVEDFDGNGTAGVAEQGCLIKNLDNGKEFVVNEIQEDGT-------------------  314 (630)
Q Consensus       254 d~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~LddG~~~~v~e~~~dg~-------------------  314 (630)
                      ...+-|+|.+++||++++..              .++.+.+|++..+|+..-.....+.|.                   
T Consensus        13 ~~~~i~sl~fs~~G~~lits--------------s~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~   78 (311)
T KOG1446|consen   13 TNGKINSLDFSDDGLLLITS--------------SEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKE   78 (311)
T ss_pred             CCCceeEEEecCCCCEEEEe--------------cCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCC
Confidence            34566889999999999442              455689999999998765533322222                   


Q ss_pred             --eeEEEEcCCCceEeeecceeeecCccceeEEEeec---ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEc
Q 006825          315 --WKKVKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASS  389 (630)
Q Consensus       315 --~~~l~dv~TG~~lt~eef~~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfS  389 (630)
                        ..++-++.+.+.|     ..+.||...|..|..+|   ..+|+|.|+++| +||+.+.++...+. --..+|  +||.
T Consensus        79 d~tIryLsl~dNkyl-----RYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvr-LWDlR~~~cqg~l~-~~~~pi--~AfD  149 (311)
T KOG1446|consen   79 DDTIRYLSLHDNKYL-----RYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVR-LWDLRVKKCQGLLN-LSGRPI--AAFD  149 (311)
T ss_pred             CCceEEEEeecCceE-----EEcCCCCceEEEEEecCCCCeEEecccCCeEE-eeEecCCCCceEEe-cCCCcc--eeEC
Confidence              3445555666666     88999999999999999   788999999999 99999888888776 333344  7899


Q ss_pred             CCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCC
Q 006825          390 VTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGR  469 (630)
Q Consensus       390 pdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~  469 (630)
                      |.|-.+|.                             +.....|++||++.-+.........-.+-....+.|.|||||+
T Consensus       150 p~GLifA~-----------------------------~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK  200 (311)
T KOG1446|consen  150 PEGLIFAL-----------------------------ANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGK  200 (311)
T ss_pred             CCCcEEEE-----------------------------ecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCC
Confidence            98866543                             3444479999987554222211111125567899999999999


Q ss_pred             EEEEEeCCCcEEEEECcCCceeeeeecccccCcccc---eEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCcc
Q 006825          470 YLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNM---LLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHM  546 (630)
Q Consensus       470 ~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~---V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~  546 (630)
                      +|+-+...+.+++-|.-+|..+..+     .++...   -....|+||++++++++.||+|                   
T Consensus       201 ~iLlsT~~s~~~~lDAf~G~~~~tf-----s~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i-------------------  256 (311)
T KOG1446|consen  201 SILLSTNASFIYLLDAFDGTVKSTF-----SGYPNAGNLPLSATFTPDSKFVLSGSDDGTI-------------------  256 (311)
T ss_pred             EEEEEeCCCcEEEEEccCCcEeeeE-----eeccCCCCcceeEEECCCCcEEEEecCCCcE-------------------
Confidence            9999999999999999999977775     333322   2578899999999999999999                   


Q ss_pred             ccccEEEeC-CCCceEEecc-CCCCEEEEEEcCC-CeEEEEECCCcEEEEeCC
Q 006825          547 VVPETVFAL-SDKPICSFQG-HLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLS  596 (630)
Q Consensus       547 i~~~~Vwdl-sgk~l~tL~G-Hs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~  596 (630)
                          .+|++ +|+.+..+.| |..++.++.|+|. -+++|+  +..+-+|=..
T Consensus       257 ----~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa--~s~l~fw~p~  303 (311)
T KOG1446|consen  257 ----HVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSA--SSNLVFWLPD  303 (311)
T ss_pred             ----EEEEcCCCcEeeEecCCCCCCccccccCCceeeeeec--CceEEEEecc
Confidence                88888 8999999999 7999999999996 555555  5678888654

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.86  E-value=1.3e-20  Score=201.07  Aligned_cols=267  Identities=16%  Similarity=0.122  Sum_probs=197.1

Q ss_pred             eeeecCccceeEEEeec---ceEeecCCCccEecccCCCCc----eeEEecCCccCCEEEEEEcCCCCeEE--eecCC--
Q 006825          333 EMCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGG----MKSKKKGSWFKSIRTVASSVTGHKER--RSSDE--  401 (630)
Q Consensus       333 ~~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~----~~~~lk~gH~~~V~sVAfSpdG~~la--sgS~D--  401 (630)
                      -+|.+|+.+|.+|++-|   .++|||.|.+|+ +||.+.-.    .-+.+.-.-...|++++||+.|..|.  +|+..  
T Consensus       161 i~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~-~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqak  239 (641)
T KOG0772|consen  161 IQLKHGTKIVSALAVDPSGARFVSGSLDYTVK-FWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAK  239 (641)
T ss_pred             EeccCCceEEEEeeecCCCceeeeccccceEE-EEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCccee
Confidence            35789999999999998   899999999999 99986421    22222223445699999999887543  33321  


Q ss_pred             ---C----------------CCccccCCcceEEEeecCCCe---EEEecCCcEEEEEeCCCCccc-ceeeeeEecccCcC
Q 006825          402 ---R----------------DTSSEKGGRRSSSATDDSQDV---SFHGQERVRVRQYGKSCKDLT-ALYKCQEIQAHNGS  458 (630)
Q Consensus       402 ---~----------------dt~s~~gh~~~Vsa~~~s~d~---l~Sgs~Dg~VriWd~~~~el~-~~~~v~tL~gHt~~  458 (630)
                         +                +...-+||...+++..+.+..   +++++.|+++|+|++....-. ..+......+-.-+
T Consensus       240 l~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~  319 (641)
T KOG0772|consen  240 LLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVP  319 (641)
T ss_pred             EEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccC
Confidence               1                223379999999999999987   899999999999998654311 11111122344557


Q ss_pred             EEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccCccc--ceEEEEECCCCCEEEEeeCCCeeeeecccccc
Q 006825          459 IWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLN--MLLLANGSPEPTSLSPKHLDNHLEKKRRGRSI  536 (630)
Q Consensus       459 V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~--~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~  536 (630)
                      ++.++|++||++||+|..||.|.+|+.........+  .....|..  .|.+|.|++||++|++-+.|.++         
T Consensus       320 ~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~--~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tL---------  388 (641)
T KOG0772|consen  320 VTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVM--KVKDAHLPGQDITSISFSYDGNYLLSRGFDDTL---------  388 (641)
T ss_pred             ceeeecCCCcchhhhcccCCceeeeecCCcccccce--EeeeccCCCCceeEEEeccccchhhhccCCCce---------
Confidence            899999999999999999999999998443322221  11367766  89999999999999999999999         


Q ss_pred             cccccccCccccccEEEeC--CCCceEEeccCC--CCEEEEEEcCC-CeEEEEEC------CCcEEEEeCCCCcEEEEEe
Q 006825          537 NRKSLSLDHMVVPETVFAL--SDKPICSFQGHL--DDVLDLSWSKS-QHLLSSSM------DKTVRLWHLSSKTCLKIFS  605 (630)
Q Consensus       537 ~~~s~s~d~~i~~~~Vwdl--sgk~l~tL~GHs--~~V~sLafSPd-~~LaSgS~------DgtVrIWDl~tg~~l~t~~  605 (630)
                                    ++|++  ..+++.+..|-.  .+-+.++|||+ ++|+||..      -+++.++|..+-..++.+.
T Consensus       389 --------------KvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~  454 (641)
T KOG0772|consen  389 --------------KVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKID  454 (641)
T ss_pred             --------------eeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEec
Confidence                          67777  346666666543  34578999999 88898843      5789999999988888887


Q ss_pred             -cCCceEEEE-cCCCcEEEEec
Q 006825          606 -HSDYDISLV-DRLMLRFAYGA  625 (630)
Q Consensus       606 -H~~~V~sVa-s~~~~~lAsgs  625 (630)
                       ....|..+. +|.+.-+..++
T Consensus       455 i~~aSvv~~~WhpkLNQi~~gs  476 (641)
T KOG0772|consen  455 ISTASVVRCLWHPKLNQIFAGS  476 (641)
T ss_pred             CCCceEEEEeecchhhheeeec
Confidence             555555555 77666555553

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.86  E-value=3.8e-20  Score=195.65  Aligned_cols=218  Identities=17%  Similarity=0.190  Sum_probs=172.8

Q ss_pred             eeeecCccceeEEEeec----ceEeecCCCccEecccCCCCce-------eEEecCCccCCEEEEEEcCCCCeEEeecCC
Q 006825          333 EMCVGHSPIVQELMRRQ----NVEEGNKDSFDLNNNGSSGGGM-------KSKKKGSWFKSIRTVASSVTGHKERRSSDE  401 (630)
Q Consensus       333 ~~l~GHs~~V~~Lafs~----~laSgS~D~tvr~vWD~~tG~~-------~~~lk~gH~~~V~sVAfSpdG~~lasgS~D  401 (630)
                      .+|.||..--..|++.+    .|++|+.|.+++ +||+.....       +..+. +|...|..|+|.|--         
T Consensus       171 l~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~-lwdi~~~~~~~~~~~p~~~~~-~h~~~VeDV~~h~~h---------  239 (422)
T KOG0264|consen  171 LRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTIC-LWDINAESKEDKVVDPKTIFS-GHEDVVEDVAWHPLH---------  239 (422)
T ss_pred             eEEEeecccccccccccccceeEeeccCCCcEE-EEeccccccCCccccceEEee-cCCcceehhhccccc---------
Confidence            58999999888899988    799999999999 999975432       33444 899999999998842         


Q ss_pred             CCCccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEcc-CCCEEEEEeCCCcE
Q 006825          402 RDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSL-DGRYLASAGEDCVI  480 (630)
Q Consensus       402 ~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSp-DG~~LASgS~DgtI  480 (630)
                                         .+.+.+.+.|+++.|||++..   ...+.+..++|++.|+|++|+| ++.+|||||.|++|
T Consensus       240 -------------------~~lF~sv~dd~~L~iwD~R~~---~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV  297 (422)
T KOG0264|consen  240 -------------------EDLFGSVGDDGKLMIWDTRSN---TSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTV  297 (422)
T ss_pred             -------------------hhhheeecCCCeEEEEEcCCC---CCCCcccccccCCceeEEEeCCCCCceEEeccCCCcE
Confidence                               244678889999999999863   2235577899999999999999 78899999999999


Q ss_pred             EEEECcCCce-eeeeecccccCcccceEEEEECCC-CCEEEEeeCCCeeeeecccccccccccccCccccccEEEeCCCC
Q 006825          481 HVWQVVESER-KGELLEKQEDGHLNMLLLANGSPE-PTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDK  558 (630)
Q Consensus       481 rVWDl~tg~~-~~~l~~~~~~gh~~~V~svafSpd-g~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk  558 (630)
                      +|||+++-.. +..     +.+|...|+.|.|+|. ..++++++.|+.+.+|+..+.....+.. +.       =+-.-+
T Consensus       298 ~LwDlRnL~~~lh~-----~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~e-da-------~dgppE  364 (422)
T KOG0264|consen  298 ALWDLRNLNKPLHT-----FEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPE-DA-------EDGPPE  364 (422)
T ss_pred             EEeechhcccCcee-----ccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChh-hh-------ccCCcc
Confidence            9999987543 233     5899999999999998 6788889999999777766521111100 00       000124


Q ss_pred             ceEEeccCCCCEEEEEEcCC--CeEEEEECCCcEEEEeCC
Q 006825          559 PICSFQGHLDDVLDLSWSKS--QHLLSSSMDKTVRLWHLS  596 (630)
Q Consensus       559 ~l~tL~GHs~~V~sLafSPd--~~LaSgS~DgtVrIWDl~  596 (630)
                      ++..-.||+..|..+.|+|.  -.++|.+.|+.+.||++.
T Consensus       365 llF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s  404 (422)
T KOG0264|consen  365 LLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA  404 (422)
T ss_pred             eeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence            56777899999999999998  778899999999999986

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.85  E-value=4.1e-20  Score=188.17  Aligned_cols=239  Identities=15%  Similarity=0.107  Sum_probs=194.1

Q ss_pred             ceEeeecceeeecCccceeEEEeec-ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCC
Q 006825          325 RQLTIEEFEMCVGHSPIVQELMRRQ-NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERD  403 (630)
Q Consensus       325 ~~lt~eef~~l~GHs~~V~~Lafs~-~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~d  403 (630)
                      +..++..+-.+..|...+++||.+. ++||||.|-||+ |+|+.+..++..+- .|.+.|+++.|.+.-           
T Consensus        29 ~~~~l~~lF~~~aH~~sitavAVs~~~~aSGssDetI~-IYDm~k~~qlg~ll-~HagsitaL~F~~~~-----------   95 (362)
T KOG0294|consen   29 VKPTLKPLFAFSAHAGSITALAVSGPYVASGSSDETIH-IYDMRKRKQLGILL-SHAGSITALKFYPPL-----------   95 (362)
T ss_pred             cceeeeccccccccccceeEEEecceeEeccCCCCcEE-EEeccchhhhccee-ccccceEEEEecCCc-----------
Confidence            3444555566788999999999875 999999999999 99999999999998 899999999999852           


Q ss_pred             CccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEE
Q 006825          404 TSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVW  483 (630)
Q Consensus       404 t~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVW  483 (630)
                                      +..-|++|+.||.|.+|++...     .++.+|++|++.|+.|+++|.|++.++.+.|+++++|
T Consensus        96 ----------------S~shLlS~sdDG~i~iw~~~~W-----~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~W  154 (362)
T KOG0294|consen   96 ----------------SKSHLLSGSDDGHIIIWRVGSW-----ELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTW  154 (362)
T ss_pred             ----------------chhheeeecCCCcEEEEEcCCe-----EEeeeecccccccceeEecCCCceEEEEcCCceeeee
Confidence                            2224788999999999998655     3689999999999999999999999999999999999


Q ss_pred             ECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeCCCCceEEe
Q 006825          484 QVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSF  563 (630)
Q Consensus       484 Dl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL  563 (630)
                      |+.+|+....+.    -.+  ....|.|+|.|.+++....++.                        -+|.+....+...
T Consensus       155 NLV~Gr~a~v~~----L~~--~at~v~w~~~Gd~F~v~~~~~i------------------------~i~q~d~A~v~~~  204 (362)
T KOG0294|consen  155 NLVRGRVAFVLN----LKN--KATLVSWSPQGDHFVVSGRNKI------------------------DIYQLDNASVFRE  204 (362)
T ss_pred             hhhcCccceeec----cCC--cceeeEEcCCCCEEEEEeccEE------------------------EEEecccHhHhhh
Confidence            999998766642    222  2334999999998888866653                        4555532222222


Q ss_pred             ccCCCCEEEEEEcCCCeEEEEECCCcEEEEeCCCCcEEEEEe-cCCceEEEE---cCCCcEEEEecce
Q 006825          564 QGHLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYDISLV---DRLMLRFAYGAFL  627 (630)
Q Consensus       564 ~GHs~~V~sLafSPd~~LaSgS~DgtVrIWDl~tg~~l~t~~-H~~~V~sVa---s~~~~~lAsgs~~  627 (630)
                      ......+.++.|-...+|++|..|+.|++||..++.++..|. |...|.++.   .+...+|++++.+
T Consensus       205 i~~~~r~l~~~~l~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSD  272 (362)
T KOG0294|consen  205 IENPKRILCATFLDGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSD  272 (362)
T ss_pred             hhccccceeeeecCCceEEEecCCceEEEeccCCCccceeeecchhheeeeEEEecCCceEEEEeccC
Confidence            223356788888766999999999999999999999999998 999999999   7777888887655

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.85  E-value=7e-20  Score=209.74  Aligned_cols=257  Identities=16%  Similarity=0.130  Sum_probs=196.9

Q ss_pred             eecCc-cceeEEEeec---ceEeec--CCCccEecccCCC------------CceeEEecCCccCCEEEEEEcCCCCeEE
Q 006825          335 CVGHS-PIVQELMRRQ---NVEEGN--KDSFDLNNNGSSG------------GGMKSKKKGSWFKSIRTVASSVTGHKER  396 (630)
Q Consensus       335 l~GHs-~~V~~Lafs~---~laSgS--~D~tvr~vWD~~t------------G~~~~~lk~gH~~~V~sVAfSpdG~~la  396 (630)
                      +++|- ..|-++..+|   .+|||+  .|++++ +|....            .+.+.+.. .|.+.|.||-|+|||+|||
T Consensus         8 wv~H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~-iW~~~~vl~~~~~~~~~l~k~l~~m~-~h~~sv~CVR~S~dG~~lA   85 (942)
T KOG0973|consen    8 WVNHNEKSIFSIDVHPDGVKFATGGQVLDGGIV-IWSQDPVLDEKEEKNENLPKHLCTMD-DHDGSVNCVRFSPDGSYLA   85 (942)
T ss_pred             ccccCCeeEEEEEecCCceeEecCCccccccce-eeccccccchhhhhhcccchhheeec-cccCceeEEEECCCCCeEe
Confidence            34443 3467778888   789999  999999 996542            22344555 8999999999999999998


Q ss_pred             eecCCCCCccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCC-------------CcccceeeeeEecccCcCEEEEE
Q 006825          397 RSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSC-------------KDLTALYKCQEIQAHNGSIWSIK  463 (630)
Q Consensus       397 sgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~-------------~el~~~~~v~tL~gHt~~V~sVa  463 (630)
                      +||+|+                             .|.+|....             .....+.++..|.+|..-|..++
T Consensus        86 sGSDD~-----------------------------~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~  136 (942)
T KOG0973|consen   86 SGSDDR-----------------------------LVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVN  136 (942)
T ss_pred             eccCcc-----------------------------eEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceec
Confidence            888775                             344444331             01122346788999999999999


Q ss_pred             EccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeeccccccc------
Q 006825          464 FSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSIN------  537 (630)
Q Consensus       464 FSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~------  537 (630)
                      |+|++.+|||+|.|++|.||+..+.+.+..+     .+|...|..+.|.|-|+|+++-+.|++|++|+......      
T Consensus       137 Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl-----~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~  211 (942)
T KOG0973|consen  137 WSPDDSLLVSVSLDNSVIIWNAKTFELLKVL-----RGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITK  211 (942)
T ss_pred             cCCCccEEEEecccceEEEEccccceeeeee-----ecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeecc
Confidence            9999999999999999999999999877774     89999999999999999999999999999999654211      


Q ss_pred             ------------ccccccCcccccc-----------EEEeC-CCCceEEeccCCCCEEEEEEcCC------C--------
Q 006825          538 ------------RKSLSLDHMVVPE-----------TVFAL-SDKPICSFQGHLDDVLDLSWSKS------Q--------  579 (630)
Q Consensus       538 ------------~~s~s~d~~i~~~-----------~Vwdl-sgk~l~tL~GHs~~V~sLafSPd------~--------  579 (630)
                                  +.++++|+.+.+.           .|..- +-+.-..|.||..+|.++.|+|.      +        
T Consensus       212 pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~  291 (942)
T KOG0973|consen  212 PFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPN  291 (942)
T ss_pred             chhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCC
Confidence                        1334555544221           12222 22344568999999999999972      3        


Q ss_pred             ----eEEEEECCCcEEEEeCCCCcEEEEEe--cCCceEEEE-cCCCcEEEEecce
Q 006825          580 ----HLLSSSMDKTVRLWHLSSKTCLKIFS--HSDYDISLV-DRLMLRFAYGAFL  627 (630)
Q Consensus       580 ----~LaSgS~DgtVrIWDl~tg~~l~t~~--H~~~V~sVa-s~~~~~lAsgs~~  627 (630)
                          .+|+||.|++|-||.....+++..+.  -...|..+. ++++..|-.-+.+
T Consensus       292 ~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~D  346 (942)
T KOG0973|consen  292 CYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACSLD  346 (942)
T ss_pred             cceEEEEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEEecC
Confidence                67899999999999998888888776  678899999 8888776655443

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.85  E-value=2.8e-20  Score=213.04  Aligned_cols=250  Identities=17%  Similarity=0.164  Sum_probs=190.8

Q ss_pred             eeecCCCCcccCCCccccccCCCCCcccccccEEEEECCCCcEEEEeeecCCCceeEEEEcCCCceEeeecceeeecCcc
Q 006825          261 MSINGNGNYIGNSGEVVEDFDGNGTAGVAEQGCLIKNLDNGKEFVVNEIQEDGTWKKVKEVGTGRQLTIEEFEMCVGHSP  340 (630)
Q Consensus       261 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~LddG~~~~v~e~~~dg~~~~l~dv~TG~~lt~eef~~l~GHs~  340 (630)
                      |.+||||+|+              |++.++....||....+     ......|......++...+..     ..|.||..
T Consensus        75 VR~S~dG~~l--------------AsGSDD~~v~iW~~~~~-----~~~~~fgs~g~~~~vE~wk~~-----~~l~~H~~  130 (942)
T KOG0973|consen   75 VRFSPDGSYL--------------ASGSDDRLVMIWERAEI-----GSGTVFGSTGGAKNVESWKVV-----SILRGHDS  130 (942)
T ss_pred             EEECCCCCeE--------------eeccCcceEEEeeeccc-----CCcccccccccccccceeeEE-----EEEecCCC
Confidence            7899999999              66667788999998741     111112222234444444555     89999999


Q ss_pred             ceeEEEeec---ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEe
Q 006825          341 IVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSAT  417 (630)
Q Consensus       341 ~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~  417 (630)
                      -|..|+++|   +|||+|.|++|. +|+..+.+.+.+++ +|...|+.|.|.|-|+|+|+-++                 
T Consensus       131 DV~Dv~Wsp~~~~lvS~s~DnsVi-iwn~~tF~~~~vl~-~H~s~VKGvs~DP~Gky~ASqsd-----------------  191 (942)
T KOG0973|consen  131 DVLDVNWSPDDSLLVSVSLDNSVI-IWNAKTFELLKVLR-GHQSLVKGVSWDPIGKYFASQSD-----------------  191 (942)
T ss_pred             ccceeccCCCccEEEEecccceEE-EEccccceeeeeee-cccccccceEECCccCeeeeecC-----------------
Confidence            999999999   899999999999 99999999999999 99999999999999999976554                 


Q ss_pred             ecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccC------cCEEEEEEccCCCEEEEEe----CCCcEEEEECcC
Q 006825          418 DDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHN------GSIWSIKFSLDGRYLASAG----EDCVIHVWQVVE  487 (630)
Q Consensus       418 ~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt------~~V~sVaFSpDG~~LASgS----~DgtIrVWDl~t  487 (630)
                                  |++|++|++..-     .+.+.+.++.      -.++.+.|||||++|++.-    .-.++.|-+-.+
T Consensus       192 ------------Drtikvwrt~dw-----~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~t  254 (942)
T KOG0973|consen  192 ------------DRTLKVWRTSDW-----GIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGT  254 (942)
T ss_pred             ------------CceEEEEEcccc-----eeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCC
Confidence                        458999986432     2344555543      3578999999999999963    334677777666


Q ss_pred             CceeeeeecccccCcccceEEEEECCC-----CC------------EEEEeeCCCeeeeecccccccccccccCcccccc
Q 006825          488 SERKGELLEKQEDGHLNMLLLANGSPE-----PT------------SLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPE  550 (630)
Q Consensus       488 g~~~~~l~~~~~~gh~~~V~svafSpd-----g~------------~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~  550 (630)
                      .+.-..     +.||..++.+++|+|.     ..            .+|+|+.|+.|                       
T Consensus       255 Wk~~~~-----LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSl-----------------------  306 (942)
T KOG0973|consen  255 WKVDKD-----LVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSL-----------------------  306 (942)
T ss_pred             ceeeee-----eecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccE-----------------------
Confidence            655555     4899999999999883     11            67889999999                       


Q ss_pred             EEEeC-CCCceEEec-cCCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCCC
Q 006825          551 TVFAL-SDKPICSFQ-GHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSK  598 (630)
Q Consensus       551 ~Vwdl-sgk~l~tL~-GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg  598 (630)
                      .||.. .-+|+.... --...|.+++|+|| -.|+.+|.||+|.+.+.+..
T Consensus       307 SVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~  357 (942)
T KOG0973|consen  307 SVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEEK  357 (942)
T ss_pred             EEEecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcchH
Confidence            56665 334443322 12357999999999 77889999999999998754

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.85  E-value=4e-20  Score=195.93  Aligned_cols=286  Identities=16%  Similarity=0.135  Sum_probs=209.7

Q ss_pred             cccccEEEEECCCCcEEEEeeec-C---CCce--e--EEEEcCCCce-Eeeecc------eeeecCccceeEEEeec---
Q 006825          288 VAEQGCLIKNLDNGKEFVVNEIQ-E---DGTW--K--KVKEVGTGRQ-LTIEEF------EMCVGHSPIVQELMRRQ---  349 (630)
Q Consensus       288 ~~~~~~~I~~LddG~~~~v~e~~-~---dg~~--~--~l~dv~TG~~-lt~eef------~~l~GHs~~V~~Lafs~---  349 (630)
                      .+...|++|+|.+|...+....+ .   -+..  .  .+--.+-+|+ |-+-++      +...---+.|.+|+-.|   
T Consensus        15 ~d~~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l~~~yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s~n~G~   94 (476)
T KOG0646|consen   15 FDPINCIVWDLRTGTSLLQYKGSYLAQAASLTALNNEYLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHALASSNLGY   94 (476)
T ss_pred             CCCcceeEEecCCCceeEEecCcccccchhhhhhchhheeeecccCccccccccCchhhhhhhcccccceeeeecCCCce
Confidence            55667999999999887763332 1   0110  0  0111111222 111111      11111235688888888   


Q ss_pred             ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecC
Q 006825          350 NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQE  429 (630)
Q Consensus       350 ~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~  429 (630)
                      +|+.|.--+.+. +|-+++|..+.++. +|...|+++.|+-||.++                             ++|+.
T Consensus        95 ~l~ag~i~g~lY-lWelssG~LL~v~~-aHYQ~ITcL~fs~dgs~i-----------------------------iTgsk  143 (476)
T KOG0646|consen   95 FLLAGTISGNLY-LWELSSGILLNVLS-AHYQSITCLKFSDDGSHI-----------------------------ITGSK  143 (476)
T ss_pred             EEEeecccCcEE-EEEeccccHHHHHH-hhccceeEEEEeCCCcEE-----------------------------EecCC
Confidence            666666889999 99999999999997 999999999999999877                             56677


Q ss_pred             CcEEEEEeCCC-----CcccceeeeeEecccCcCEEEEEEccCC--CEEEEEeCCCcEEEEECcCCceeeeeecccccCc
Q 006825          430 RVRVRQYGKSC-----KDLTALYKCQEIQAHNGSIWSIKFSLDG--RYLASAGEDCVIHVWQVVESERKGELLEKQEDGH  502 (630)
Q Consensus       430 Dg~VriWd~~~-----~el~~~~~v~tL~gHt~~V~sVaFSpDG--~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh  502 (630)
                      ||.|++|.+..     .+. .....+.|..|+-+|+++...+.|  .+|+|+|.|.+||+||+..+..+..+.      -
T Consensus       144 Dg~V~vW~l~~lv~a~~~~-~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~------f  216 (476)
T KOG0646|consen  144 DGAVLVWLLTDLVSADNDH-SVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTIT------F  216 (476)
T ss_pred             CccEEEEEEEeecccccCC-CccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEe------c
Confidence            78889997531     110 223467899999999999998754  589999999999999999998776643      2


Q ss_pred             ccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeCCCCceEEeccCCC--CEEEEEEcCC-C
Q 006825          503 LNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLD--DVLDLSWSKS-Q  579 (630)
Q Consensus       503 ~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL~GHs~--~V~sLafSPd-~  579 (630)
                      ...+.+++..|..+.+..|..+|.|.+-.......      ...-+..+.+...+..+..|.||.+  .|+||+.+-| .
T Consensus       217 p~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~------~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~Dgt  290 (476)
T KOG0646|consen  217 PSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSG------QSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGT  290 (476)
T ss_pred             CCcceeEEEcccccEEEecCCcceEEeeehhcCCc------ccccccccccccccceeeeeccccCCcceeEEEEecCcc
Confidence            35688999999999999999999985443322110      0000012555667778889999999  9999999999 9


Q ss_pred             eEEEEECCCcEEEEeCCCCcEEEEEe-cCCceEEEE-cCC
Q 006825          580 HLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYDISLV-DRL  617 (630)
Q Consensus       580 ~LaSgS~DgtVrIWDl~tg~~l~t~~-H~~~V~sVa-s~~  617 (630)
                      +|++|+.||.|+|||+.+.+|++++. ..++|+.+. .|.
T Consensus       291 lLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~~  330 (476)
T KOG0646|consen  291 LLLSGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQINPL  330 (476)
T ss_pred             EEEeeCCCCCEEEEecchHHHHHHHhhhccccceeEeecc
Confidence            99999999999999999999999998 789999888 444

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.85  E-value=5.2e-19  Score=180.42  Aligned_cols=255  Identities=13%  Similarity=0.078  Sum_probs=204.3

Q ss_pred             CccceeEEEeec---ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCC------------
Q 006825          338 HSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDER------------  402 (630)
Q Consensus       338 Hs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~------------  402 (630)
                      -...|.+|.|++   .|++.+.|-+++ ++|..+|++++++. .+.-.|..+.|......+.-++.-.            
T Consensus        13 ~~~~i~sl~fs~~G~~litss~dDsl~-LYd~~~g~~~~ti~-skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dN   90 (311)
T KOG1446|consen   13 TNGKINSLDFSDDGLLLITSSEDDSLR-LYDSLSGKQVKTIN-SKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDN   90 (311)
T ss_pred             CCCceeEEEecCCCCEEEEecCCCeEE-EEEcCCCceeeEee-cccccccEEEEecCCceEEEccCCCCCceEEEEeecC
Confidence            345688999988   688889999999 99999999999988 7777888888987666655555422            


Q ss_pred             -CCccccCCcceEEEeecCCCe--EEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCc
Q 006825          403 -DTSSEKGGRRSSSATDDSQDV--SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCV  479 (630)
Q Consensus       403 -dt~s~~gh~~~Vsa~~~s~d~--l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~Dgt  479 (630)
                       -...+.||...|+.+..++..  +++++.|.+||+||++..+..++     +  |...--.++|.|.|-++|.+..-..
T Consensus        91 kylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~-----l--~~~~~pi~AfDp~GLifA~~~~~~~  163 (311)
T KOG1446|consen   91 KYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGL-----L--NLSGRPIAAFDPEGLIFALANGSEL  163 (311)
T ss_pred             ceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceE-----E--ecCCCcceeECCCCcEEEEecCCCe
Confidence             122399999999999999876  99999999999999986653221     1  2233346899999999999988889


Q ss_pred             EEEEECcCC-c-eeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeC-C
Q 006825          480 IHVWQVVES-E-RKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-S  556 (630)
Q Consensus       480 IrVWDl~tg-~-~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-s  556 (630)
                      |+|+|++.- + +...+. . ..+.......+.|+|||++|+.+...+.+                       .+.+. +
T Consensus       164 IkLyD~Rs~dkgPF~tf~-i-~~~~~~ew~~l~FS~dGK~iLlsT~~s~~-----------------------~~lDAf~  218 (311)
T KOG1446|consen  164 IKLYDLRSFDKGPFTTFS-I-TDNDEAEWTDLEFSPDGKSILLSTNASFI-----------------------YLLDAFD  218 (311)
T ss_pred             EEEEEecccCCCCceeEc-c-CCCCccceeeeEEcCCCCEEEEEeCCCcE-----------------------EEEEccC
Confidence            999999754 2 222221 1 12456678899999999999999888877                       55555 8


Q ss_pred             CCceEEeccCCCCE---EEEEEcCC-CeEEEEECCCcEEEEeCCCCcEEEEEe--cCCceEEEE-cCCCcEEEEecc
Q 006825          557 DKPICSFQGHLDDV---LDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS--HSDYDISLV-DRLMLRFAYGAF  626 (630)
Q Consensus       557 gk~l~tL~GHs~~V---~sLafSPd-~~LaSgS~DgtVrIWDl~tg~~l~t~~--H~~~V~sVa-s~~~~~lAsgs~  626 (630)
                      |..+.+|.+|...=   ...+|.|| +++++|+.||+|.+|++++|..+..+.  +...+.|+. +|....+++++.
T Consensus       219 G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa~s  295 (311)
T KOG1446|consen  219 GTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSASS  295 (311)
T ss_pred             CcEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeecCc
Confidence            99999998887543   67889999 999999999999999999999999887  789999999 888888888764

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.84  E-value=3e-20  Score=202.90  Aligned_cols=246  Identities=15%  Similarity=0.152  Sum_probs=199.5

Q ss_pred             eecCCCceeEEEEcCCCce--EeeecceeeecCccceeEEEeec---ceEeecCCCccEecccCCCC--ceeEEecCCcc
Q 006825          308 EIQEDGTWKKVKEVGTGRQ--LTIEEFEMCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGG--GMKSKKKGSWF  380 (630)
Q Consensus       308 e~~~dg~~~~l~dv~TG~~--lt~eef~~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG--~~~~~lk~gH~  380 (630)
                      ..|.||. .++|.+..-..  -+. -...+.-|+..|..++...   .|+|+|.|.||+ +|++..+  -++.+++ .|.
T Consensus        42 TgGRDg~-i~~W~~~~d~~~~s~~-~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK-~W~~~~~~~~c~stir-~H~  117 (735)
T KOG0308|consen   42 TGGRDGI-IRLWSVTQDSNEPSTP-YIASMEHHSDWVNDIILCGNGKTLISASSDTTVK-VWNAHKDNTFCMSTIR-THK  117 (735)
T ss_pred             ecCCCce-EEEeccccccCCcccc-hhhhhhhhHhHHhhHHhhcCCCceEEecCCceEE-EeecccCcchhHhhhh-ccc
Confidence            3455665 45676653221  100 1366788999999988755   899999999999 9999888  6888888 999


Q ss_pred             CCEEEEEEc-CCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcc--c---ceeeeeEec-
Q 006825          381 KSIRTVASS-VTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDL--T---ALYKCQEIQ-  453 (630)
Q Consensus       381 ~~V~sVAfS-pdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el--~---~~~~v~tL~-  453 (630)
                      ..|+|+|.. ++.                             ..+++|+-|++|.+||+.++..  .   .......+. 
T Consensus       118 DYVkcla~~ak~~-----------------------------~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~s  168 (735)
T KOG0308|consen  118 DYVKCLAYIAKNN-----------------------------ELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGS  168 (735)
T ss_pred             chheeeeecccCc-----------------------------eeEEecCCCccEEEEEccCcchhhhhhccccccccCCC
Confidence            999999984 332                             2257888899999999986621  1   111234455 


Q ss_pred             ccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeeccc
Q 006825          454 AHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRG  533 (630)
Q Consensus       454 gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~  533 (630)
                      ||..+|++++.++.|..|++||..+.|++||-++++.+..|     .||...|..+..+.||+.+++++.|++|      
T Consensus       169 G~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkL-----rGHTdNVr~ll~~dDGt~~ls~sSDgtI------  237 (735)
T KOG0308|consen  169 GPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKL-----RGHTDNVRVLLVNDDGTRLLSASSDGTI------  237 (735)
T ss_pred             CCccceeeeecCCcceEEEecCcccceEEeccccccceeee-----eccccceEEEEEcCCCCeEeecCCCceE------
Confidence            99999999999999999999999999999999999988885     7999999999999999999999999999      


Q ss_pred             ccccccccccCccccccEEEeC-CCCceEEeccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCC-CcEEEEEecCCce
Q 006825          534 RSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSS-KTCLKIFSHSDYD  610 (630)
Q Consensus       534 ~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~t-g~~l~t~~H~~~V  610 (630)
                                       ++|++ ..+++.++..|...|+++.-+|+ .++.+|+.|+.|..=|+++ .++...++...+|
T Consensus       238 -----------------rlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~daPv  300 (735)
T KOG0308|consen  238 -----------------RLWDLGQQRCLATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICKEDAPV  300 (735)
T ss_pred             -----------------EeeeccccceeeeEEeccCceEEEeeCCCcceEEecCCCCcEEecccCCchhheEeecCCCch
Confidence                             88888 67899999999999999999999 9999999999999999998 5666666544444


Q ss_pred             EEEE
Q 006825          611 ISLV  614 (630)
Q Consensus       611 ~sVa  614 (630)
                      ..+.
T Consensus       301 ~~l~  304 (735)
T KOG0308|consen  301 LKLH  304 (735)
T ss_pred             hhhh
Confidence            4444

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.84  E-value=1.2e-19  Score=190.83  Aligned_cols=224  Identities=17%  Similarity=0.189  Sum_probs=189.8

Q ss_pred             cceeEEEeec---ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEE
Q 006825          340 PIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSA  416 (630)
Q Consensus       340 ~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa  416 (630)
                      +.+.+|-..|   .+.+|+.|+++. +.|-.+++.+.+++ ||...|..|.|+|+-.                       
T Consensus       220 pgi~ald~~~s~~~ilTGG~d~~av-~~d~~s~q~l~~~~-Gh~kki~~v~~~~~~~-----------------------  274 (506)
T KOG0289|consen  220 PGITALDIIPSSSKILTGGEDKTAV-LFDKPSNQILATLK-GHTKKITSVKFHKDLD-----------------------  274 (506)
T ss_pred             CCeeEEeecCCCCcceecCCCCceE-EEecchhhhhhhcc-CcceEEEEEEeccchh-----------------------
Confidence            4456665554   789999999999 99999999999999 9999999999999743                       


Q ss_pred             eecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeec
Q 006825          417 TDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLE  496 (630)
Q Consensus       417 ~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~  496 (630)
                            -+++++.|..|++|......     +...+..|..+|+.+..+|.|.||++++.|+++...|++++..+.... 
T Consensus       275 ------~v~~aSad~~i~vws~~~~s-----~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs-  342 (506)
T KOG0289|consen  275 ------TVITASADEIIRVWSVPLSS-----EPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVS-  342 (506)
T ss_pred             ------heeecCCcceEEeecccccc-----CccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEe-
Confidence                  24667778899999875442     456678899999999999999999999999999999999998876642 


Q ss_pred             ccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeC-CCCceEEeccCCCCEEEEEE
Q 006825          497 KQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSW  575 (630)
Q Consensus       497 ~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL~GHs~~V~sLaf  575 (630)
                        .....-.+.+++|||||.++.+|..|+.+                       ++|++ ++..+..|.||+++|..++|
T Consensus       343 --~~~s~v~~ts~~fHpDgLifgtgt~d~~v-----------------------kiwdlks~~~~a~Fpght~~vk~i~F  397 (506)
T KOG0289|consen  343 --DETSDVEYTSAAFHPDGLIFGTGTPDGVV-----------------------KIWDLKSQTNVAKFPGHTGPVKAISF  397 (506)
T ss_pred             --eccccceeEEeeEcCCceEEeccCCCceE-----------------------EEEEcCCccccccCCCCCCceeEEEe
Confidence              11233458899999999999999999999                       88888 56788899999999999999


Q ss_pred             cCC-CeEEEEECCCcEEEEeCCCCcEEEEEe--cCCceEEEE-cCCCcEEEEec
Q 006825          576 SKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS--HSDYDISLV-DRLMLRFAYGA  625 (630)
Q Consensus       576 SPd-~~LaSgS~DgtVrIWDl~tg~~l~t~~--H~~~V~sVa-s~~~~~lAsgs  625 (630)
                      +.+ -+|++++.|+.|++||++.-+..++|.  ....|.++. +..+.+++.++
T Consensus       398 sENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g  451 (506)
T KOG0289|consen  398 SENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAG  451 (506)
T ss_pred             ccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeec
Confidence            999 789999999999999999988888887  444688888 77777777664

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.84  E-value=1.7e-19  Score=179.88  Aligned_cols=236  Identities=14%  Similarity=0.105  Sum_probs=195.4

Q ss_pred             eeeecCccceeEEEeec---ceEeecCCCccEecccCCCCceeEEec-CCccCCEEEEEEcCCCCeEEeecCCCCCcccc
Q 006825          333 EMCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKKK-GSWFKSIRTVASSVTGHKERRSSDERDTSSEK  408 (630)
Q Consensus       333 ~~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~lk-~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~  408 (630)
                      ..+.||...|.+|+|.-   .||+|+.|++++ +|++..++.+..+. .||...|-.++|.|.                 
T Consensus        14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~-v~n~e~~r~~~~~~~~gh~~svdql~w~~~-----------------   75 (313)
T KOG1407|consen   14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVS-VWNLERDRFRKELVYRGHTDSVDQLCWDPK-----------------   75 (313)
T ss_pred             HHhhhhhhcceEEEEcccCceeeecccCCceE-EEEecchhhhhhhcccCCCcchhhheeCCC-----------------
Confidence            34678999999999987   899999999999 99998875544332 289999999999985                 


Q ss_pred             CCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCC
Q 006825          409 GGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVES  488 (630)
Q Consensus       409 gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg  488 (630)
                                 .++.+++++.|.+|++||....+     +++.+..-.+.| -+.|+|+|++++.++.|-.|-..|.++.
T Consensus        76 -----------~~d~~atas~dk~ir~wd~r~~k-----~~~~i~~~~eni-~i~wsp~g~~~~~~~kdD~it~id~r~~  138 (313)
T KOG1407|consen   76 -----------HPDLFATASGDKTIRIWDIRSGK-----CTARIETKGENI-NITWSPDGEYIAVGNKDDRITFIDARTY  138 (313)
T ss_pred             -----------CCcceEEecCCceEEEEEeccCc-----EEEEeeccCcce-EEEEcCCCCEEEEecCcccEEEEEeccc
Confidence                       45667889999999999987764     455555444444 5889999999999999999999988654


Q ss_pred             ceeee-----------------------------ee-------cccccCcccceEEEEECCCCCEEEEeeCCCeeeeecc
Q 006825          489 ERKGE-----------------------------LL-------EKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRR  532 (630)
Q Consensus       489 ~~~~~-----------------------------l~-------~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~  532 (630)
                      +....                             ++       ......|.....+|.|+|+|+++|+|+.|..+     
T Consensus       139 ~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlv-----  213 (313)
T KOG1407|consen  139 KIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALV-----  213 (313)
T ss_pred             ceeehhcccceeeeeeecCCCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeecccccee-----
Confidence            43211                             00       11235788888999999999999999999998     


Q ss_pred             cccccccccccCccccccEEEeCC-CCceEEeccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCCCcEEEEEecCCce
Q 006825          533 GRSINRKSLSLDHMVVPETVFALS-DKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYD  610 (630)
Q Consensus       533 ~~~~~~~s~s~d~~i~~~~Vwdls-gk~l~tL~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg~~l~t~~H~~~V  610 (630)
                                        .+|++. --+++.+.-|.-+|..|+|+.+ ++||+||.|..|-|=++++|..+..+++.++-
T Consensus       214 ------------------SLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~~~~~t  275 (313)
T KOG1407|consen  214 ------------------SLWDVDELICERCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIPCEGPT  275 (313)
T ss_pred             ------------------eccChhHhhhheeeccccCceEEEEeccCcceeeccCccceEEeEecccCCeEEEeeccCCc
Confidence                              788874 3577888889999999999999 99999999999999999999999999999999


Q ss_pred             EEEE-cCCCcEEEEecc
Q 006825          611 ISLV-DRLMLRFAYGAF  626 (630)
Q Consensus       611 ~sVa-s~~~~~lAsgs~  626 (630)
                      ..|+ +|....||++..
T Consensus       276 ~tVAWHPk~~LLAyA~d  292 (313)
T KOG1407|consen  276 FTVAWHPKRPLLAYACD  292 (313)
T ss_pred             eeEEecCCCceeeEEec
Confidence            9999 999999988754

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.83  E-value=8.2e-19  Score=175.41  Aligned_cols=229  Identities=14%  Similarity=0.167  Sum_probs=191.2

Q ss_pred             eeecCccceeEEEeec---ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccccCC
Q 006825          334 MCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGG  410 (630)
Q Consensus       334 ~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh  410 (630)
                      .|.||..+++++-+..   .|.|.+.|.++- ||=..+|+.+.+.. ||++.|.+++..-+.+++               
T Consensus         5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~-vw~s~nGerlGty~-GHtGavW~~Did~~s~~l---------------   67 (327)
T KOG0643|consen    5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPT-VWYSLNGERLGTYD-GHTGAVWCCDIDWDSKHL---------------   67 (327)
T ss_pred             ccccCccccceEEecCCCcEEEEecCCCCce-EEEecCCceeeeec-CCCceEEEEEecCCccee---------------
Confidence            5789999999999976   899999999999 99999999999999 999999999988876666               


Q ss_pred             cceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEe-----CCCcEEEEEC
Q 006825          411 RRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAG-----EDCVIHVWQV  485 (630)
Q Consensus       411 ~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS-----~DgtIrVWDl  485 (630)
                                    ++|+.|.++++||+.+++.     +.+++ -..+|..+.|+++|++++...     .-+.|.++|+
T Consensus        68 --------------iTGSAD~t~kLWDv~tGk~-----la~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi  127 (327)
T KOG0643|consen   68 --------------ITGSADQTAKLWDVETGKQ-----LATWK-TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDI  127 (327)
T ss_pred             --------------eeccccceeEEEEcCCCcE-----EEEee-cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEc
Confidence                          5566777899999998852     34443 456899999999999877664     4467999999


Q ss_pred             cCC-------ceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeC-CC
Q 006825          486 VES-------ERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SD  557 (630)
Q Consensus       486 ~tg-------~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sg  557 (630)
                      +..       ++...+     .-+...+..+-|.|-+.+|++|..+|.|                       .+|++ +|
T Consensus       128 ~~~~~~~~s~ep~~kI-----~t~~skit~a~Wg~l~~~ii~Ghe~G~i-----------------------s~~da~~g  179 (327)
T KOG0643|consen  128 RDDSSDIDSEEPYLKI-----PTPDSKITSALWGPLGETIIAGHEDGSI-----------------------SIYDARTG  179 (327)
T ss_pred             cCChhhhcccCceEEe-----cCCccceeeeeecccCCEEEEecCCCcE-----------------------EEEEcccC
Confidence            733       223332     3455788899999999999999999999                       77887 55


Q ss_pred             -CceEEeccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCCCcEEEEEecCCceEEEE-cCCCcEEEEecce
Q 006825          558 -KPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYDISLV-DRLMLRFAYGAFL  627 (630)
Q Consensus       558 -k~l~tL~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg~~l~t~~H~~~V~sVa-s~~~~~lAsgs~~  627 (630)
                       +.+..-+-|...|+.|+|+|+ .+++|+|.|.+.+|||+.+-+++++|.-.-+|++.+ .|....+..++..
T Consensus       180 ~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te~PvN~aaisP~~d~VilgGGq  252 (327)
T KOG0643|consen  180 KELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTTERPVNTAAISPLLDHVILGGGQ  252 (327)
T ss_pred             ceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEeeecccccceecccccceEEecCCc
Confidence             445556779999999999999 999999999999999999999999999889999999 7777666666543

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.83  E-value=7e-20  Score=185.89  Aligned_cols=237  Identities=14%  Similarity=0.158  Sum_probs=186.4

Q ss_pred             ceeeecCccceeEEEeec---ceEeecCCCccEecccCCCCceeEEec-CCccCCEEEEEEcCCCCeEEeecCCCCCccc
Q 006825          332 FEMCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKKK-GSWFKSIRTVASSVTGHKERRSSDERDTSSE  407 (630)
Q Consensus       332 f~~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~lk-~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~  407 (630)
                      +.+|.-|...|..|.|.|   .|+|||.|+|++ +.|......++-+| ..-...|+++.|.|.|.++..          
T Consensus       165 IRTlYDH~devn~l~FHPre~ILiS~srD~tvK-lFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllv----------  233 (430)
T KOG0640|consen  165 IRTLYDHVDEVNDLDFHPRETILISGSRDNTVK-LFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLV----------  233 (430)
T ss_pred             EeehhhccCcccceeecchhheEEeccCCCeEE-EEecccHHHHHHHHHhhccceeeeEeecCCCceEEE----------
Confidence            588999999999999999   899999999999 99987655444333 135668999999999987754          


Q ss_pred             cCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcC
Q 006825          408 KGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVE  487 (630)
Q Consensus       408 ~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~t  487 (630)
                                         |.+--++|+||+.+-+.  +.....-.+|++.|++|.+++.|++.+|||.||.|||||-..
T Consensus       234 -------------------gTdHp~~rlYdv~T~Qc--fvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS  292 (430)
T KOG0640|consen  234 -------------------GTDHPTLRLYDVNTYQC--FVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVS  292 (430)
T ss_pred             -------------------ecCCCceeEEeccceeE--eeecCcccccccceeEEEecCCccEEEEeccCCcEEeecccc
Confidence                               34445699999976532  111123367999999999999999999999999999999999


Q ss_pred             CceeeeeecccccCccc-ceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeC-CCCceEEecc
Q 006825          488 SERKGELLEKQEDGHLN-MLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQG  565 (630)
Q Consensus       488 g~~~~~l~~~~~~gh~~-~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL~G  565 (630)
                      +.|+.++    ...|.+ .|.+..|..+++++++.+.|..+                       ++|.+ +++++.++.|
T Consensus       293 ~rCv~t~----~~AH~gsevcSa~Ftkn~kyiLsSG~DS~v-----------------------kLWEi~t~R~l~~YtG  345 (430)
T KOG0640|consen  293 NRCVRTI----GNAHGGSEVCSAVFTKNGKYILSSGKDSTV-----------------------KLWEISTGRMLKEYTG  345 (430)
T ss_pred             HHHHHHH----HhhcCCceeeeEEEccCCeEEeecCCccee-----------------------eeeeecCCceEEEEec
Confidence            9999886    356654 57889999999999999999999                       78888 7888888865


Q ss_pred             CC--C---CEEEEEEcCC-CeEEEEE-CCCcEEEEeCCCCcEEEEEe--cCCceEEEE-cCCCcEEEEecce
Q 006825          566 HL--D---DVLDLSWSKS-QHLLSSS-MDKTVRLWHLSSKTCLKIFS--HSDYDISLV-DRLMLRFAYGAFL  627 (630)
Q Consensus       566 Hs--~---~V~sLafSPd-~~LaSgS-~DgtVrIWDl~tg~~l~t~~--H~~~V~sVa-s~~~~~lAsgs~~  627 (630)
                      -.  +   --+...|+.. .|++.-- ..+.+.-||.+++..+..+.  |++.|.++. +|..-.+.+.+.+
T Consensus       346 Ag~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD  417 (430)
T KOG0640|consen  346 AGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDD  417 (430)
T ss_pred             CCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeeccc
Confidence            41  1   1244567666 6666443 35678899999987766665  999999999 8888888777643

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.83  E-value=3.2e-19  Score=181.41  Aligned_cols=252  Identities=15%  Similarity=0.197  Sum_probs=199.6

Q ss_pred             EEeeecCCCceeEEEEcCCCceEeeecceeeecCccceeEEEeec---ceEeecCCCccEecccCC------C-------
Q 006825          305 VVNEIQEDGTWKKVKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSS------G-------  368 (630)
Q Consensus       305 ~v~e~~~dg~~~~l~dv~TG~~lt~eef~~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~------t-------  368 (630)
                      ++.....|. +.++|.+.+|++|     .++.||.+.|+++.|++   .++++|.|.+.. ||..+      .       
T Consensus       162 i~gtASADh-TA~iWs~Esg~CL-----~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taH-IW~~av~~~vP~~~a~~~h  234 (481)
T KOG0300|consen  162 ICGTASADH-TARIWSLESGACL-----ATYTGHTGSVNSIKFHNSGLLLLTASGDETAH-IWKAAVNWEVPSNNAPSDH  234 (481)
T ss_pred             ceeeccccc-ceeEEeeccccce-----eeecccccceeeEEeccccceEEEccCCcchH-HHHHhhcCcCCCCCCCCCC
Confidence            444444444 4779999999999     99999999999999999   789999999999 99511      0       


Q ss_pred             -----------------------Cc----eeEEecCCccCCEEEEEEcCCCCeEEeecCCC-------CC----ccccCC
Q 006825          369 -----------------------GG----MKSKKKGSWFKSIRTVASSVTGHKERRSSDER-------DT----SSEKGG  410 (630)
Q Consensus       369 -----------------------G~----~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~-------dt----~s~~gh  410 (630)
                                             |.    .+..++ ||...|-+.-|-..|+.++++|.|+       ++    ..+.||
T Consensus       235 SsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~lt-gH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGH  313 (481)
T KOG0300|consen  235 SSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLT-GHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGH  313 (481)
T ss_pred             CchhhhhcccccccccccccccCCceeeeeeeeee-ccccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCc
Confidence                                   11    234566 8999999999999999999999998       22    237888


Q ss_pred             cceEEEeecCCC--eEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCC
Q 006825          411 RRSSSATDDSQD--VSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVES  488 (630)
Q Consensus       411 ~~~Vsa~~~s~d--~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg  488 (630)
                      ....+-..-.+.  .+++.+.|.+.|+||...    ....+..|+||++.|+++.|..|.+ +++|+.|.+|||||+++-
T Consensus       314 d~ELtHcstHptQrLVvTsSrDtTFRLWDFRe----aI~sV~VFQGHtdtVTS~vF~~dd~-vVSgSDDrTvKvWdLrNM  388 (481)
T KOG0300|consen  314 DSELTHCSTHPTQRLVVTSSRDTTFRLWDFRE----AIQSVAVFQGHTDTVTSVVFNTDDR-VVSGSDDRTVKVWDLRNM  388 (481)
T ss_pred             chhccccccCCcceEEEEeccCceeEeccchh----hcceeeeecccccceeEEEEecCCc-eeecCCCceEEEeeeccc
Confidence            776654444443  388999999999999862    2346788999999999999998775 899999999999999875


Q ss_pred             ceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeCCCCceEEe-----
Q 006825          489 ERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSF-----  563 (630)
Q Consensus       489 ~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL-----  563 (630)
                      ......     .....++..++.+..+.+|+.--++..|                       ++|++.|..+..|     
T Consensus       389 RsplAT-----IRtdS~~NRvavs~g~~iIAiPhDNRqv-----------------------RlfDlnG~RlaRlPrtsR  440 (481)
T KOG0300|consen  389 RSPLAT-----IRTDSPANRVAVSKGHPIIAIPHDNRQV-----------------------RLFDLNGNRLARLPRTSR  440 (481)
T ss_pred             cCccee-----eecCCccceeEeecCCceEEeccCCceE-----------------------EEEecCCCccccCCcccc
Confidence            432221     2334567788888778888888777777                       8999988766655     


Q ss_pred             ccCCCCEEEEEEcCC---CeEEEEECCCcEEEEeCCC
Q 006825          564 QGHLDDVLDLSWSKS---QHLLSSSMDKTVRLWHLSS  597 (630)
Q Consensus       564 ~GHs~~V~sLafSPd---~~LaSgS~DgtVrIWDl~t  597 (630)
                      +||...|+|++|..+   .-|++++.|..+.=|.+.+
T Consensus       441 qgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~  477 (481)
T KOG0300|consen  441 QGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINT  477 (481)
T ss_pred             cccceeeeeeeccccCcccccccccccceeeeeEecc
Confidence            699999999999865   6788999999999998764

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.83  E-value=4.1e-20  Score=190.80  Aligned_cols=257  Identities=17%  Similarity=0.160  Sum_probs=202.3

Q ss_pred             eeeecCccceeEEEeec----ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCcccc
Q 006825          333 EMCVGHSPIVQELMRRQ----NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEK  408 (630)
Q Consensus       333 ~~l~GHs~~V~~Lafs~----~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~  408 (630)
                      ..|.||..-|.+||..|    .++|||.||.|+ +||+++-.++.+++ .|.+.|+.+++.-  ..+.+.++|+.....+
T Consensus        60 ~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~Vk-iWnlsqR~~~~~f~-AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk  135 (433)
T KOG0268|consen   60 GSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVK-IWNLSQRECIRTFK-AHEGLVRGICVTQ--TSFFTVGDDKTVKQWK  135 (433)
T ss_pred             hhccccccccchhhcCcchhhhhhccccCceEE-EEehhhhhhhheee-cccCceeeEEecc--cceEEecCCcceeeee
Confidence            66899999999999999    699999999999 99999999999999 9999999999988  6677888887322211


Q ss_pred             -----C----CcceEEEeecCCCe--EEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccC-CCEEEEEeC
Q 006825          409 -----G----GRRSSSATDDSQDV--SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLD-GRYLASAGE  476 (630)
Q Consensus       409 -----g----h~~~Vsa~~~s~d~--l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpD-G~~LASgS~  476 (630)
                           -    +...+..++.....  +++++.  .|-|||..-.     .+++.+.--...|.++.|+|- ..+|++|+.
T Consensus       136 ~~~~p~~tilg~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~-----~Pv~smswG~Dti~svkfNpvETsILas~~s  208 (433)
T KOG0268|consen  136 IDGPPLHTILGKSVYLGIDHHRKNSVFATCGE--QIDIWDEQRD-----NPVSSMSWGADSISSVKFNPVETSILASCAS  208 (433)
T ss_pred             ccCCcceeeeccccccccccccccccccccCc--eeeecccccC-----CccceeecCCCceeEEecCCCcchheeeecc
Confidence                 0    11122222222222  455554  4778887533     246777777889999999995 458899999


Q ss_pred             CCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeC-
Q 006825          477 DCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-  555 (630)
Q Consensus       477 DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-  555 (630)
                      |+.|-|+|++++..+..++..      -.-..|+|+|+.-.++++..|..+                       ..||+ 
T Consensus       209 DrsIvLyD~R~~~Pl~KVi~~------mRTN~IswnPeafnF~~a~ED~nl-----------------------Y~~DmR  259 (433)
T KOG0268|consen  209 DRSIVLYDLRQASPLKKVILT------MRTNTICWNPEAFNFVAANEDHNL-----------------------YTYDMR  259 (433)
T ss_pred             CCceEEEecccCCccceeeee------ccccceecCccccceeeccccccc-----------------------eehhhh
Confidence            999999999999888775421      234579999998889999999988                       66666 


Q ss_pred             -CCCceEEeccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCCCcEEEEEe--cCCceEEEE-cCCCcEEEEecce-ec
Q 006825          556 -SDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS--HSDYDISLV-DRLMLRFAYGAFL-NV  629 (630)
Q Consensus       556 -sgk~l~tL~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg~~l~t~~--H~~~V~sVa-s~~~~~lAsgs~~-nI  629 (630)
                       -..++..+.+|...|+++.|+|. +-++|||.|++||||.+..+.-.-++.  -...|.||. +.+..++.+|+.+ ||
T Consensus       260 ~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nv  339 (433)
T KOG0268|consen  260 NLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNV  339 (433)
T ss_pred             hhcccchhhcccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcce
Confidence             45788899999999999999999 999999999999999998876555553  567789999 7788888888755 44

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.83  E-value=8.4e-18  Score=187.97  Aligned_cols=338  Identities=14%  Similarity=0.080  Sum_probs=244.4

Q ss_pred             ccccccEEEEECCCCcEEEEeeecCCCceeE---------EEEcCCCceEeee----c-ceeeecCccceeEEEee----
Q 006825          287 GVAEQGCLIKNLDNGKEFVVNEIQEDGTWKK---------VKEVGTGRQLTIE----E-FEMCVGHSPIVQELMRR----  348 (630)
Q Consensus       287 ~~~~~~~~I~~LddG~~~~v~e~~~dg~~~~---------l~dv~TG~~lt~e----e-f~~l~GHs~~V~~Lafs----  348 (630)
                      +...+...|||+..|+++.+.....++.+..         .--..+|+.+.++    + +..+.---+.|++|.|+    
T Consensus       178 Gs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~  257 (910)
T KOG1539|consen  178 GSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGN  257 (910)
T ss_pred             eecCCcEEEEEeccCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCC
Confidence            3566789999999999988755444444211         1111244444221    1 14444335899999998    


Q ss_pred             cceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCC-------CC--------ccccCCcce
Q 006825          349 QNVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDER-------DT--------SSEKGGRRS  413 (630)
Q Consensus       349 ~~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~-------dt--------~s~~gh~~~  413 (630)
                      |.||+|+.-+.+. +||++..+.+..++..|.+.|...-|-|.-..+++.+.|.       |+        .+..||..+
T Consensus       258 p~las~~~~G~m~-~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~P  336 (910)
T KOG1539|consen  258 PLLASGRSNGDMA-FWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAP  336 (910)
T ss_pred             eeEEeccCCceEE-EEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCC
Confidence            4899999889999 9999988877777768888888888888777777766665       21        124455555


Q ss_pred             EEEeecC-CCe--EEEecCCcEEEEE------------------------------------------------------
Q 006825          414 SSATDDS-QDV--SFHGQERVRVRQY------------------------------------------------------  436 (630)
Q Consensus       414 Vsa~~~s-~d~--l~Sgs~Dg~VriW------------------------------------------------------  436 (630)
                      -.++.|. ..+  +.++..|.+.|.+                                                      
T Consensus       337 p~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~  416 (910)
T KOG1539|consen  337 PSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVIT  416 (910)
T ss_pred             chheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeE
Confidence            5555544 222  4555555554444                                                      


Q ss_pred             -----------eCCCCcccceee-eeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccCccc
Q 006825          437 -----------GKSCKDLTALYK-CQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLN  504 (630)
Q Consensus       437 -----------d~~~~el~~~~~-v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~  504 (630)
                                 +.+.+......+ ...++.-...+++++.++.|++.+-|..-|+|-++++..|-....+.  ....|..
T Consensus       417 ~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~--~~~ah~~  494 (910)
T KOG1539|consen  417 AHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFG--DSPAHKG  494 (910)
T ss_pred             EecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccc--cCccccC
Confidence                       333322111110 01112223689999999999999999999999999999987666641  1268999


Q ss_pred             ceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCcccc------------------ccEEEeC-CCCceEEecc
Q 006825          505 MLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVV------------------PETVFAL-SDKPICSFQG  565 (630)
Q Consensus       505 ~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~------------------~~~Vwdl-sgk~l~tL~G  565 (630)
                      .|..++...-++.+++++.+|.+++|+..+......+.....+.                  ...+.|. +.+.++.|.|
T Consensus       495 ~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~g  574 (910)
T KOG1539|consen  495 EVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWG  574 (910)
T ss_pred             ceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhc
Confidence            99999999889999999999999999988866554444333221                  1145565 7788899999


Q ss_pred             CCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCCCcEEEEEecCCceEEEE-cCCCcEEEEecce
Q 006825          566 HLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYDISLV-DRLMLRFAYGAFL  627 (630)
Q Consensus       566 Hs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg~~l~t~~H~~~V~sVa-s~~~~~lAsgs~~  627 (630)
                      |.+.|++++|||| ++|+++++|++||+||+.++.++-.+.-..+.+++. +|++-+||+...+
T Consensus       575 h~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~vd~~~~sls~SPngD~LAT~Hvd  638 (910)
T KOG1539|consen  575 HGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLVDSPCTSLSFSPNGDFLATVHVD  638 (910)
T ss_pred             cccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEecCCcceeeEECCCCCEEEEEEec
Confidence            9999999999999 999999999999999999999999998888888888 9999999987543

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.82  E-value=1.8e-19  Score=183.00  Aligned_cols=214  Identities=15%  Similarity=0.196  Sum_probs=171.9

Q ss_pred             eeeecCccceeEEEeec---ceEeecCCCccEecccCCC------------C------ceeEEecCCccCCEEEEEEcCC
Q 006825          333 EMCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSG------------G------GMKSKKKGSWFKSIRTVASSVT  391 (630)
Q Consensus       333 ~~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~t------------G------~~~~~lk~gH~~~V~sVAfSpd  391 (630)
                      ..+..|...+++.+|++   .+|+||.|..|+ +-|+..            |      ..++++- .|...|+.+.|.|.
T Consensus       106 ~ylt~HK~~cR~aafs~DG~lvATGsaD~SIK-ildvermlaks~~~em~~~~~qa~hPvIRTlY-DH~devn~l~FHPr  183 (430)
T KOG0640|consen  106 KYLTSHKSPCRAAAFSPDGSLVATGSADASIK-ILDVERMLAKSKPKEMISGDTQARHPVIRTLY-DHVDEVNDLDFHPR  183 (430)
T ss_pred             EEEeecccceeeeeeCCCCcEEEccCCcceEE-EeehhhhhhhcchhhhccCCcccCCceEeehh-hccCcccceeecch
Confidence            45778999999999999   899999999999 998861            1      1233443 55556666666554


Q ss_pred             CCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEE
Q 006825          392 GHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYL  471 (630)
Q Consensus       392 G~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~L  471 (630)
                      ...                             +++|+.|++|+++|..-......+  ..| ....+|.+|.|+|.|.+|
T Consensus       184 e~I-----------------------------LiS~srD~tvKlFDfsK~saKrA~--K~~-qd~~~vrsiSfHPsGefl  231 (430)
T KOG0640|consen  184 ETI-----------------------------LISGSRDNTVKLFDFSKTSAKRAF--KVF-QDTEPVRSISFHPSGEFL  231 (430)
T ss_pred             hhe-----------------------------EEeccCCCeEEEEecccHHHHHHH--HHh-hccceeeeEeecCCCceE
Confidence            332                             677888899999998643221111  112 245789999999999999


Q ss_pred             EEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccE
Q 006825          472 ASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPET  551 (630)
Q Consensus       472 ASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~  551 (630)
                      +.|-+-.++|+||+++-++....  .+..+|...|.++.+++.+++.++++.||.|                       +
T Consensus       232 lvgTdHp~~rlYdv~T~Qcfvsa--nPd~qht~ai~~V~Ys~t~~lYvTaSkDG~I-----------------------k  286 (430)
T KOG0640|consen  232 LVGTDHPTLRLYDVNTYQCFVSA--NPDDQHTGAITQVRYSSTGSLYVTASKDGAI-----------------------K  286 (430)
T ss_pred             EEecCCCceeEEeccceeEeeec--CcccccccceeEEEecCCccEEEEeccCCcE-----------------------E
Confidence            99999999999999998775442  3468999999999999999999999999999                       8


Q ss_pred             EEeC-CCCceEEec-cCC-CCEEEEEEcCC-CeEEEEECCCcEEEEeCCCCcEEEEEe
Q 006825          552 VFAL-SDKPICSFQ-GHL-DDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS  605 (630)
Q Consensus       552 Vwdl-sgk~l~tL~-GHs-~~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg~~l~t~~  605 (630)
                      +|+- +++++.++. .|. ..|.+..|.++ +|++|.++|.+|+||.+.+++++..+.
T Consensus       287 lwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~Yt  344 (430)
T KOG0640|consen  287 LWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYT  344 (430)
T ss_pred             eeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEe
Confidence            8886 889998885 465 46999999999 999999999999999999999999885

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.82  E-value=1.6e-19  Score=188.95  Aligned_cols=253  Identities=14%  Similarity=0.121  Sum_probs=201.3

Q ss_pred             eeecCccceeEEEeec---ceEeecCCCccEecccCCCCc--eeEEecCCccCCEEEEEEcCCCCeEEeecCCC------
Q 006825          334 MCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGG--MKSKKKGSWFKSIRTVASSVTGHKERRSSDER------  402 (630)
Q Consensus       334 ~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~--~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~------  402 (630)
                      .+.-|..-|..+.|-+   .|++|+.|..|+ +|++..++  .+.+|. |-.+.|.++.|.++++++.+.+.|+      
T Consensus       170 ~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik-~W~v~~~k~~~~~tLa-Gs~g~it~~d~d~~~~~~iAas~d~~~r~Wn  247 (459)
T KOG0288|consen  170 VLDAHEGEVHDVEFLRNSDTLATGGSDRIIK-LWNVLGEKSELISTLA-GSLGNITSIDFDSDNKHVIAASNDKNLRLWN  247 (459)
T ss_pred             hhhccccccceeEEccCcchhhhcchhhhhh-hhhcccchhhhhhhhh-ccCCCcceeeecCCCceEEeecCCCceeeee
Confidence            3455777777777766   799999999999 99998766  667777 8999999999999999888877777      


Q ss_pred             -----CCccccCCcceEEEeecCCCe--EEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEe
Q 006825          403 -----DTSSEKGGRRSSSATDDSQDV--SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAG  475 (630)
Q Consensus       403 -----dt~s~~gh~~~Vsa~~~s~d~--l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS  475 (630)
                           ....+.||+.-|+++.|....  +++|+.|.+|++||+...     +|..++- -...+..|..+  ...++||-
T Consensus       248 vd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~-----~C~kt~l-~~S~cnDI~~~--~~~~~SgH  319 (459)
T KOG0288|consen  248 VDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKA-----YCSKTVL-PGSQCNDIVCS--ISDVISGH  319 (459)
T ss_pred             ccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhh-----heecccc-ccccccceEec--ceeeeecc
Confidence                 134489999999999998876  899999999999998654     3444332 23345666664  66789999


Q ss_pred             CCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeC
Q 006825          476 EDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL  555 (630)
Q Consensus       476 ~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl  555 (630)
                      .|++||.||++........     ..+ +.|.++..++++..+.+++.|.++                       .++++
T Consensus       320 ~DkkvRfwD~Rs~~~~~sv-----~~g-g~vtSl~ls~~g~~lLsssRDdtl-----------------------~viDl  370 (459)
T KOG0288|consen  320 FDKKVRFWDIRSADKTRSV-----PLG-GRVTSLDLSMDGLELLSSSRDDTL-----------------------KVIDL  370 (459)
T ss_pred             cccceEEEeccCCceeeEe-----ecC-cceeeEeeccCCeEEeeecCCCce-----------------------eeeec
Confidence            9999999999998887774     233 489999999999999999999999                       66666


Q ss_pred             CCCc-eEEecc----CCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCCCcEEEEEe--cCC-ceEEEE-cCCCcEEEEec
Q 006825          556 SDKP-ICSFQG----HLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS--HSD-YDISLV-DRLMLRFAYGA  625 (630)
Q Consensus       556 sgk~-l~tL~G----Hs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg~~l~t~~--H~~-~V~sVa-s~~~~~lAsgs  625 (630)
                      .+.. .++|..    -...++.+.|||+ .|+++||+||.|+||++.++++...+.  +.. .|++++ ++.+..+++++
T Consensus       371 Rt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsad  450 (459)
T KOG0288|consen  371 RTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSAD  450 (459)
T ss_pred             ccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhccc
Confidence            4333 333321    1124899999999 999999999999999999999999987  444 799999 77777666554

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.82  E-value=2.7e-19  Score=187.27  Aligned_cols=240  Identities=17%  Similarity=0.166  Sum_probs=191.3

Q ss_pred             eEEEEcCCCceEeeecceeeecCccceeEEEeec---ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCC
Q 006825          316 KKVKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTG  392 (630)
Q Consensus       316 ~~l~dv~TG~~lt~eef~~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG  392 (630)
                      ..+|++..++   .+-..+|.|-.+.|+.+.|-+   .+.++++|++++ +|++..++.+++|. ||+..|.++.|...-
T Consensus       199 Ik~W~v~~~k---~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r-~Wnvd~~r~~~TLs-GHtdkVt~ak~~~~~  273 (459)
T KOG0288|consen  199 IKLWNVLGEK---SELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLR-LWNVDSLRLRHTLS-GHTDKVTAAKFKLSH  273 (459)
T ss_pred             hhhhhcccch---hhhhhhhhccCCCcceeeecCCCceEEeecCCCcee-eeeccchhhhhhhc-ccccceeeehhhccc
Confidence            3466665555   233478888889999999977   788899999999 99999999999999 899999999999877


Q ss_pred             CeEEeecCCC-----CCcc-------ccCC-cceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCE
Q 006825          393 HKERRSSDER-----DTSS-------EKGG-RRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSI  459 (630)
Q Consensus       393 ~~lasgS~D~-----dt~s-------~~gh-~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V  459 (630)
                      ..+++|+.|+     |..+       +.+. ...|.+   ....+++|..|++||+||.....     +.++...|. .|
T Consensus       274 ~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~---~~~~~~SgH~DkkvRfwD~Rs~~-----~~~sv~~gg-~v  344 (459)
T KOG0288|consen  274 SRVVSGSADRTIKLWDLQKAYCSKTVLPGSQCNDIVC---SISDVISGHFDKKVRFWDIRSAD-----KTRSVPLGG-RV  344 (459)
T ss_pred             cceeeccccchhhhhhhhhhheeccccccccccceEe---cceeeeecccccceEEEeccCCc-----eeeEeecCc-ce
Confidence            7799999998     2221       1111 111111   22337899999999999987765     456666665 99


Q ss_pred             EEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeeccc-ccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccc
Q 006825          460 WSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQ-EDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINR  538 (630)
Q Consensus       460 ~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~-~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~  538 (630)
                      +++..+++|..|.+++.|.++++.|+.+.+....+.... ..+|  -++.+.|+|++.|+++|+.||.|           
T Consensus       345 tSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~as--DwtrvvfSpd~~YvaAGS~dgsv-----------  411 (459)
T KOG0288|consen  345 TSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCAS--DWTRVVFSPDGSYVAAGSADGSV-----------  411 (459)
T ss_pred             eeEeeccCCeEEeeecCCCceeeeecccccEEEEeecccccccc--ccceeEECCCCceeeeccCCCcE-----------
Confidence            999999999999999999999999999877666653221 2233  27789999999999999999999           


Q ss_pred             cccccCccccccEEEeC-CCCceEEeccCCC--CEEEEEEcCC-CeEEEEECCCcEEEEe
Q 006825          539 KSLSLDHMVVPETVFAL-SDKPICSFQGHLD--DVLDLSWSKS-QHLLSSSMDKTVRLWH  594 (630)
Q Consensus       539 ~s~s~d~~i~~~~Vwdl-sgk~l~tL~GHs~--~V~sLafSPd-~~LaSgS~DgtVrIWD  594 (630)
                                  +||++ ++++...+...+.  .|++++|+|. ..|++++.++.+.||.
T Consensus       412 ------------~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~  459 (459)
T KOG0288|consen  412 ------------YIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLWT  459 (459)
T ss_pred             ------------EEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence                        88998 7888888876554  4999999999 8999999999999993

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.82  E-value=1.9e-18  Score=189.25  Aligned_cols=236  Identities=19%  Similarity=0.198  Sum_probs=198.4

Q ss_pred             CCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCC-----------CCccccC-CcceEEEeecCCCeE
Q 006825          357 DSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDER-----------DTSSEKG-GRRSSSATDDSQDVS  424 (630)
Q Consensus       357 D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~-----------dt~s~~g-h~~~Vsa~~~s~d~l  424 (630)
                      ...+- +|+..+|....... -+...|.+|.|+++|.+|+.|-.++           .+....+ |...|-+++.....+
T Consensus       196 g~~vy-lW~~~s~~v~~l~~-~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~~~~l  273 (484)
T KOG0305|consen  196 GQSVY-LWSASSGSVTELCS-FGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWNSSVL  273 (484)
T ss_pred             cceEE-EEecCCCceEEeEe-cCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEeccCceE
Confidence            35566 99999999776666 4489999999999999999998877           2333666 999999999998889


Q ss_pred             EEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccCccc
Q 006825          425 FHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLN  504 (630)
Q Consensus       425 ~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~  504 (630)
                      .+|+.++.|..+|+...+.    ...++.+|...|..++|++|+++||+|+.|+.|.|||....+.+..     +..|..
T Consensus       274 ssGsr~~~I~~~dvR~~~~----~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~-----~~~H~a  344 (484)
T KOG0305|consen  274 SSGSRDGKILNHDVRISQH----VVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFT-----FTEHTA  344 (484)
T ss_pred             EEecCCCcEEEEEEecchh----hhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEE-----Eeccce
Confidence            9999999999999987653    2335899999999999999999999999999999999976666666     489999


Q ss_pred             ceEEEEECCC-CCEEEEe--eCCCeeeeecccccccccccccCccccccEEEeC-CCCceEEeccCCCCEEEEEEcCC-C
Q 006825          505 MLLLANGSPE-PTSLSPK--HLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSWSKS-Q  579 (630)
Q Consensus       505 ~V~svafSpd-g~~lasg--s~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL~GHs~~V~sLafSPd-~  579 (630)
                      .|..++|+|= ..+||+|  +.|++|                       ++|+. +|+.+..+. -...|..|.|++. +
T Consensus       345 AVKA~awcP~q~~lLAsGGGs~D~~i-----------------------~fwn~~~g~~i~~vd-tgsQVcsL~Wsk~~k  400 (484)
T KOG0305|consen  345 AVKALAWCPWQSGLLATGGGSADRCI-----------------------KFWNTNTGARIDSVD-TGSQVCSLIWSKKYK  400 (484)
T ss_pred             eeeEeeeCCCccCceEEcCCCcccEE-----------------------EEEEcCCCcEecccc-cCCceeeEEEcCCCC
Confidence            9999999996 5677775  467777                       78887 677776665 3467999999998 5


Q ss_pred             eEEEEE--CCCcEEEEeCCCCcEEEEEe-cCCceEEEE-cCCCcEEEEecce
Q 006825          580 HLLSSS--MDKTVRLWHLSSKTCLKIFS-HSDYDISLV-DRLMLRFAYGAFL  627 (630)
Q Consensus       580 ~LaSgS--~DgtVrIWDl~tg~~l~t~~-H~~~V~sVa-s~~~~~lAsgs~~  627 (630)
                      -|+++.  .+..|.||+..+.+.+..+. |...|..++ +|++..+++++.+
T Consensus       401 Ei~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~D  452 (484)
T KOG0305|consen  401 ELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAAD  452 (484)
T ss_pred             EEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEEECCCCCEEEEeccc
Confidence            555543  37789999999999999998 999999999 9999999999765

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.82  E-value=4.9e-19  Score=187.35  Aligned_cols=238  Identities=16%  Similarity=0.184  Sum_probs=180.5

Q ss_pred             eeeecCccceeEEEeec----ceEeecCCCccEecccCCCCceeE----------EecCCccCCEEEEEEcCCCCeEEee
Q 006825          333 EMCVGHSPIVQELMRRQ----NVEEGNKDSFDLNNNGSSGGGMKS----------KKKGSWFKSIRTVASSVTGHKERRS  398 (630)
Q Consensus       333 ~~l~GHs~~V~~Lafs~----~laSgS~D~tvr~vWD~~tG~~~~----------~lk~gH~~~V~sVAfSpdG~~lasg  398 (630)
                      ...+-|-+-|..+...|    .+|+++..+.+. |||..+-..+.          +|+ ||.+.=++++|++.-      
T Consensus       118 ~~~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~-Vfd~tk~~s~~~~~~~~~Pdl~L~-gH~~eg~glsWn~~~------  189 (422)
T KOG0264|consen  118 SQKINHDGEVNRARYMPQNPNIVATKTSSGDVY-VFDYTKHPSKPKASGECRPDLRLK-GHEKEGYGLSWNRQQ------  189 (422)
T ss_pred             EEeccCCccchhhhhCCCCCcEEEecCCCCCEE-EEEeccCCCcccccccCCCceEEE-eeccccccccccccc------
Confidence            44456777788777777    688888899999 99986532222          555 676655555555531      


Q ss_pred             cCCCCCccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcc--cceeeeeEecccCcCEEEEEEcc-CCCEEEEEe
Q 006825          399 SDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDL--TALYKCQEIQAHNGSIWSIKFSL-DGRYLASAG  475 (630)
Q Consensus       399 S~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el--~~~~~v~tL~gHt~~V~sVaFSp-DG~~LASgS  475 (630)
                                            ...+++++.|.+|.+||+.....  ........+.+|...|..++|++ +..+|++++
T Consensus       190 ----------------------~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~  247 (422)
T KOG0264|consen  190 ----------------------EGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVG  247 (422)
T ss_pred             ----------------------ceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeec
Confidence                                  12278999999999999875543  22345577899999999999999 677999999


Q ss_pred             CCCcEEEEECcCC--ceeeeeecccccCcccceEEEEECCC-CCEEEEeeCCCeeeeecccccccccccccCccccccEE
Q 006825          476 EDCVIHVWQVVES--ERKGELLEKQEDGHLNMLLLANGSPE-PTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETV  552 (630)
Q Consensus       476 ~DgtIrVWDl~tg--~~~~~l~~~~~~gh~~~V~svafSpd-g~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~V  552 (630)
                      .|+.+.|||++++  +....     ..+|...|.+++|.|- +.+||+|+.|++|                       .+
T Consensus       248 dd~~L~iwD~R~~~~~~~~~-----~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV-----------------------~L  299 (422)
T KOG0264|consen  248 DDGKLMIWDTRSNTSKPSHS-----VKAHSAEVNCVAFNPFNEFILATGSADKTV-----------------------AL  299 (422)
T ss_pred             CCCeEEEEEcCCCCCCCccc-----ccccCCceeEEEeCCCCCceEEeccCCCcE-----------------------EE
Confidence            9999999999963  22222     4899999999999996 7788899999999                       67


Q ss_pred             EeC--CCCceEEeccCCCCEEEEEEcCC--CeEEEEECCCcEEEEeCCCCc--------------EEEEEe-cCCceEEE
Q 006825          553 FAL--SDKPICSFQGHLDDVLDLSWSKS--QHLLSSSMDKTVRLWHLSSKT--------------CLKIFS-HSDYDISL  613 (630)
Q Consensus       553 wdl--sgk~l~tL~GHs~~V~sLafSPd--~~LaSgS~DgtVrIWDl~tg~--------------~l~t~~-H~~~V~sV  613 (630)
                      ||+  -.+++++|.+|...|..|.|+|.  ..|||++.|+.+.|||+..-.              ++.+-. |...|..+
T Consensus       300 wDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~Df  379 (422)
T KOG0264|consen  300 WDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDF  379 (422)
T ss_pred             eechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccc
Confidence            777  34689999999999999999998  899999999999999996421              233333 88888888


Q ss_pred             E-cCCCcE-EEEeccee
Q 006825          614 V-DRLMLR-FAYGAFLN  628 (630)
Q Consensus       614 a-s~~~~~-lAsgs~~n  628 (630)
                      . +|..-+ +++.+-+|
T Consensus       380 sWnp~ePW~I~SvaeDN  396 (422)
T KOG0264|consen  380 SWNPNEPWTIASVAEDN  396 (422)
T ss_pred             cCCCCCCeEEEEecCCc
Confidence            8 665555 44444433

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.81  E-value=2.9e-18  Score=182.69  Aligned_cols=227  Identities=18%  Similarity=0.200  Sum_probs=181.6

Q ss_pred             CCCcEEEEeeecCCCceeEEEEcCCCceEeeecceeeecCccceeEEEeec----ceEeecCCCccEecccCCCCceeEE
Q 006825          299 DNGKEFVVNEIQEDGTWKKVKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQ----NVEEGNKDSFDLNNNGSSGGGMKSK  374 (630)
Q Consensus       299 ddG~~~~v~e~~~dg~~~~l~dv~TG~~lt~eef~~l~GHs~~V~~Lafs~----~laSgS~D~tvr~vWD~~tG~~~~~  374 (630)
                      .||+.++...  +.|. .++.|..+ |.+    +..+.+|+..|..+-|.|    .+++|++|++++ +||++++.....
T Consensus        78 ~DG~LlaaGD--~sG~-V~vfD~k~-r~i----LR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k-~~d~s~a~v~~~  148 (487)
T KOG0310|consen   78 SDGRLLAAGD--ESGH-VKVFDMKS-RVI----LRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVK-YWDLSTAYVQAE  148 (487)
T ss_pred             cCCeEEEccC--CcCc-EEEecccc-HHH----HHHHhhccCceeEEEecccCCeEEEecCCCceEE-EEEcCCcEEEEE
Confidence            5676665433  2344 45666444 322    377899999999999999    699999999999 999999988668


Q ss_pred             ecCCccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecc
Q 006825          375 KKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQA  454 (630)
Q Consensus       375 lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~g  454 (630)
                      +. +|++.|++.+|+|...                            ..+++|+.||+||+||+.....    .+.+| .
T Consensus       149 l~-~htDYVR~g~~~~~~~----------------------------hivvtGsYDg~vrl~DtR~~~~----~v~el-n  194 (487)
T KOG0310|consen  149 LS-GHTDYVRCGDISPAND----------------------------HIVVTGSYDGKVRLWDTRSLTS----RVVEL-N  194 (487)
T ss_pred             ec-CCcceeEeeccccCCC----------------------------eEEEecCCCceEEEEEeccCCc----eeEEe-c
Confidence            87 9999999999999532                            2368999999999999977631    34445 4


Q ss_pred             cCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccc
Q 006825          455 HNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGR  534 (630)
Q Consensus       455 Ht~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~  534 (630)
                      |..+|..|.|-|.|.++||+|. ..|||||+.+|......    ...|...|+|+++..++..|++++-|+.+       
T Consensus       195 hg~pVe~vl~lpsgs~iasAgG-n~vkVWDl~~G~qll~~----~~~H~KtVTcL~l~s~~~rLlS~sLD~~V-------  262 (487)
T KOG0310|consen  195 HGCPVESVLALPSGSLIASAGG-NSVKVWDLTTGGQLLTS----MFNHNKTVTCLRLASDSTRLLSGSLDRHV-------  262 (487)
T ss_pred             CCCceeeEEEcCCCCEEEEcCC-CeEEEEEecCCceehhh----hhcccceEEEEEeecCCceEeecccccce-------
Confidence            9999999999999999999986 57999999977654432    35599999999999999999999999999       


Q ss_pred             cccccccccCccccccEEEeCC-CCceEEeccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCC
Q 006825          535 SINRKSLSLDHMVVPETVFALS-DKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSS  597 (630)
Q Consensus       535 ~~~~~s~s~d~~i~~~~Vwdls-gk~l~tL~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~t  597 (630)
                                      ++|+.+ -+.++.+. -.++|.+++.+|+ +.++.|-.||.+-+=+...
T Consensus       263 ----------------KVfd~t~~Kvv~s~~-~~~pvLsiavs~dd~t~viGmsnGlv~~rr~~~  310 (487)
T KOG0310|consen  263 ----------------KVFDTTNYKVVHSWK-YPGPVLSIAVSPDDQTVVIGMSNGLVSIRRREV  310 (487)
T ss_pred             ----------------EEEEccceEEEEeee-cccceeeEEecCCCceEEEecccceeeeehhhc
Confidence                            778763 34555543 6789999999999 9999999999988775443

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.80  E-value=5.3e-18  Score=172.49  Aligned_cols=256  Identities=10%  Similarity=0.037  Sum_probs=195.1

Q ss_pred             CccceeEEEeec---ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCC-------C---C
Q 006825          338 HSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDER-------D---T  404 (630)
Q Consensus       338 Hs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~-------d---t  404 (630)
                      ....|..|.|+|   .|+.+|||+++| ++|+.+-..+.+++  |..+|.+++|.++ ..+++|.-|.       +   .
T Consensus        12 P~d~IS~v~f~~~~~~LLvssWDgslr-lYdv~~~~l~~~~~--~~~plL~c~F~d~-~~~~~G~~dg~vr~~Dln~~~~   87 (323)
T KOG1036|consen   12 PEDGISSVKFSPSSSDLLVSSWDGSLR-LYDVPANSLKLKFK--HGAPLLDCAFADE-STIVTGGLDGQVRRYDLNTGNE   87 (323)
T ss_pred             ChhceeeEEEcCcCCcEEEEeccCcEE-EEeccchhhhhhee--cCCceeeeeccCC-ceEEEeccCceEEEEEecCCcc
Confidence            356789999996   688888999999 99998887777665  8999999999986 5566777665       2   2


Q ss_pred             ccccCCcceEEEeecCC--CeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEE
Q 006825          405 SSEKGGRRSSSATDDSQ--DVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHV  482 (630)
Q Consensus       405 ~s~~gh~~~Vsa~~~s~--d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrV  482 (630)
                      ...-.|...|.++....  ..+++|+.|.+|++||.....     .+-++. ....|+++..  .|..|+.|..|..|.+
T Consensus        88 ~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~-----~~~~~d-~~kkVy~~~v--~g~~LvVg~~~r~v~i  159 (323)
T KOG1036|consen   88 DQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKV-----VVGTFD-QGKKVYCMDV--SGNRLVVGTSDRKVLI  159 (323)
T ss_pred             eeeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccc-----cccccc-cCceEEEEec--cCCEEEEeecCceEEE
Confidence            23667889999999984  449999999999999987532     222233 2348999987  6778999999999999


Q ss_pred             EECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeCCCCceEE
Q 006825          483 WQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICS  562 (630)
Q Consensus       483 WDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~t  562 (630)
                      ||+++.....+.   ....-...+.+|++-|.+.-++.++-||.|.+.-.....                  ...+.-..
T Consensus       160 yDLRn~~~~~q~---reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~------------------~~~skkya  218 (323)
T KOG1036|consen  160 YDLRNLDEPFQR---RESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSE------------------EAQSKKYA  218 (323)
T ss_pred             EEcccccchhhh---ccccceeEEEEEEEecCCCceEEEeecceEEEEccCCch------------------HHhhhcee
Confidence            999876544332   124445678899999988888999999988433221100                  00122334


Q ss_pred             eccCC---------CCEEEEEEcCC-CeEEEEECCCcEEEEeCCCCcEEEEEe-cCCceEEEE-cCCCcEEEEecc
Q 006825          563 FQGHL---------DDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYDISLV-DRLMLRFAYGAF  626 (630)
Q Consensus       563 L~GHs---------~~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg~~l~t~~-H~~~V~sVa-s~~~~~lAsgs~  626 (630)
                      |+.|.         -+|++|+|+|- +.|+||+.||.|.+||+.+.+.++.|. ....|.+++ +.++..||.+..
T Consensus       219 FkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~s  294 (323)
T KOG1036|consen  219 FKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIASS  294 (323)
T ss_pred             EEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEec
Confidence            44553         25899999998 999999999999999999999999887 667788888 888888888754

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.80  E-value=2.5e-18  Score=182.15  Aligned_cols=220  Identities=18%  Similarity=0.213  Sum_probs=191.0

Q ss_pred             EEecCCccCCEEEEEEcCCCCeEEeecCCC-----------C------C-----------ccc-cCCcceEEEeecCCCe
Q 006825          373 SKKKGSWFKSIRTVASSVTGHKERRSSDER-----------D------T-----------SSE-KGGRRSSSATDDSQDV  423 (630)
Q Consensus       373 ~~lk~gH~~~V~sVAfSpdG~~lasgS~D~-----------d------t-----------~s~-~gh~~~Vsa~~~s~d~  423 (630)
                      ...+ .|..+|.+||++|+.++..+++.+.           +      .           ... ++|...+.+++.++|+
T Consensus       136 ~~~~-~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dg  214 (479)
T KOG0299|consen  136 RVIG-KHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDG  214 (479)
T ss_pred             eeec-cccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCC
Confidence            3444 8999999999999999999888765           0      0           001 3899999999999999


Q ss_pred             --EEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccC
Q 006825          424 --SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDG  501 (630)
Q Consensus       424 --l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~g  501 (630)
                        +++|..|..|.||+..+.+     .++.|++|.+.|.+++|-.....|++++.|++|+||++.....+.+     +.|
T Consensus       215 kylatgg~d~~v~Iw~~~t~e-----hv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vet-----lyG  284 (479)
T KOG0299|consen  215 KYLATGGRDRHVQIWDCDTLE-----HVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVET-----LYG  284 (479)
T ss_pred             cEEEecCCCceEEEecCcccc-----hhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHH-----HhC
Confidence              9999999999999998876     4678999999999999998888999999999999999988776666     489


Q ss_pred             cccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeCCCCceEEeccCCCCEEEEEEcCCCeE
Q 006825          502 HLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKSQHL  581 (630)
Q Consensus       502 h~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL~GHs~~V~sLafSPd~~L  581 (630)
                      |...|..|....-.+.+..|+.|.++                       ++|.+..+....|.+|.+.+-|++|-.+..|
T Consensus       285 Hqd~v~~IdaL~reR~vtVGgrDrT~-----------------------rlwKi~eesqlifrg~~~sidcv~~In~~Hf  341 (479)
T KOG0299|consen  285 HQDGVLGIDALSRERCVTVGGRDRTV-----------------------RLWKIPEESQLIFRGGEGSIDCVAFINDEHF  341 (479)
T ss_pred             CccceeeechhcccceEEecccccee-----------------------EEEeccccceeeeeCCCCCeeeEEEecccce
Confidence            99999999888888888888899999                       7888876677788999999999999988999


Q ss_pred             EEEECCCcEEEEeCCCCcEEEEEe--cC---C--------ceEEEE-cCCCcEEEEecc
Q 006825          582 LSSSMDKTVRLWHLSSKTCLKIFS--HS---D--------YDISLV-DRLMLRFAYGAF  626 (630)
Q Consensus       582 aSgS~DgtVrIWDl~tg~~l~t~~--H~---~--------~V~sVa-s~~~~~lAsgs~  626 (630)
                      +|||.||.|.||++...+++.+..  |.   .        +|++|+ .+....+|+|+.
T Consensus       342 vsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~  400 (479)
T KOG0299|consen  342 VSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSW  400 (479)
T ss_pred             eeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCC
Confidence            999999999999999999998886  42   2        899999 888888888874

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.80  E-value=1.1e-18  Score=190.42  Aligned_cols=238  Identities=18%  Similarity=0.185  Sum_probs=176.0

Q ss_pred             ceeeecCccceeEEEeec---ceEeecCCCccEecccCCCCceeEE--ecCCccCCEEEEEEcCCCCeEEeecCCCCCcc
Q 006825          332 FEMCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSK--KKGSWFKSIRTVASSVTGHKERRSSDERDTSS  406 (630)
Q Consensus       332 f~~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~--lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s  406 (630)
                      |....-|-++|-.|.+-|   .|++++.|.|+| +||++++++.+.  +. ||.+.|+++||.|.               
T Consensus        93 lk~~~aH~nAifDl~wapge~~lVsasGDsT~r-~Wdvk~s~l~G~~~~~-GH~~SvkS~cf~~~---------------  155 (720)
T KOG0321|consen   93 LKKPLAHKNAIFDLKWAPGESLLVSASGDSTIR-PWDVKTSRLVGGRLNL-GHTGSVKSECFMPT---------------  155 (720)
T ss_pred             hcccccccceeEeeccCCCceeEEEccCCceee-eeeeccceeecceeec-ccccccchhhhccC---------------
Confidence            466778999999999999   899999999999 999999998887  66 99999999999996               


Q ss_pred             ccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCccc--ceee--------------------eeEecccCcCEEE---
Q 006825          407 EKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLT--ALYK--------------------CQEIQAHNGSIWS---  461 (630)
Q Consensus       407 ~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~--~~~~--------------------v~tL~gHt~~V~s---  461 (630)
                                   .+..+++|+.|+.|.|||+......  ..++                    ++.-++|...|..   
T Consensus       156 -------------n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvT  222 (720)
T KOG0321|consen  156 -------------NPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVT  222 (720)
T ss_pred             -------------CCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeE
Confidence                         3466899999999999998754311  1111                    1223456666766   


Q ss_pred             EEEccCCCEEEEEeC-CCcEEEEECcCCceeeeee---cccccCc---ccceEEEEECCCCCEEEEeeCCCeeeeecccc
Q 006825          462 IKFSLDGRYLASAGE-DCVIHVWQVVESERKGELL---EKQEDGH---LNMLLLANGSPEPTSLSPKHLDNHLEKKRRGR  534 (630)
Q Consensus       462 VaFSpDG~~LASgS~-DgtIrVWDl~tg~~~~~l~---~~~~~gh---~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~  534 (630)
                      +-|..|...|||+|. |++|||||+++..+....-   ...+.-|   ...+.++.....|.++.+.+.|+.|..|+...
T Consensus       223 vv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s  302 (720)
T KOG0321|consen  223 VVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRS  302 (720)
T ss_pred             EEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccc
Confidence            667789999999998 9999999998876654321   0111222   23345566655678888877899999998654


Q ss_pred             cccc----------------cccccCcccc-------ccEEEeC--CCCceEEeccCCCCEEEEEEcCC--CeEEEEECC
Q 006825          535 SINR----------------KSLSLDHMVV-------PETVFAL--SDKPICSFQGHLDDVLDLSWSKS--QHLLSSSMD  587 (630)
Q Consensus       535 ~~~~----------------~s~s~d~~i~-------~~~Vwdl--sgk~l~tL~GHs~~V~sLafSPd--~~LaSgS~D  587 (630)
                      ....                ...+++...+       ...+|.+  -..+...+.||...|++++|.|.  .-+||++.|
T Consensus       303 ~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD  382 (720)
T KOG0321|consen  303 LSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSDD  382 (720)
T ss_pred             cCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCceeeccC
Confidence            2111                1123333322       2367877  34667778999999999999997  788999999


Q ss_pred             CcEEEEeCCCCc
Q 006825          588 KTVRLWHLSSKT  599 (630)
Q Consensus       588 gtVrIWDl~tg~  599 (630)
                      .+++||++..+-
T Consensus       383 ~~~kiW~l~~~l  394 (720)
T KOG0321|consen  383 FRVKIWRLSNGL  394 (720)
T ss_pred             cceEEEeccCch
Confidence            999999996653

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.80  E-value=2.8e-18  Score=188.72  Aligned_cols=256  Identities=17%  Similarity=0.202  Sum_probs=197.0

Q ss_pred             eecCccceeEEEeec---ceEeecCCCccEecccCCC--Cc---------------------------------------
Q 006825          335 CVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSG--GG---------------------------------------  370 (630)
Q Consensus       335 l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~t--G~---------------------------------------  370 (630)
                      +.||.+.|.++-+.|   .|.|+|.|+++. +|-..+  |-                                       
T Consensus       263 l~GHeDWV~sv~W~p~~~~LLSASaDksmi-iW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~h  341 (764)
T KOG1063|consen  263 LMGHEDWVYSVWWHPEGLDLLSASADKSMI-IWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFH  341 (764)
T ss_pred             hcCcccceEEEEEccchhhheecccCcceE-EEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEE
Confidence            459999999999999   789999999999 994321  10                                       


Q ss_pred             ----------eeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCc---------------cccCCcceEEEeecCC-Ce-
Q 006825          371 ----------MKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTS---------------SEKGGRRSSSATDDSQ-DV-  423 (630)
Q Consensus       371 ----------~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~---------------s~~gh~~~Vsa~~~s~-d~-  423 (630)
                                .......||.+.|+.|+|.|.|.+|.+.+.|..|.               -..-|-..++|+++-+ +. 
T Consensus       342 lWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~  421 (764)
T KOG1063|consen  342 LWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQ  421 (764)
T ss_pred             EEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCce
Confidence                      00111248999999999999999999999887321               1344667788888877 55 


Q ss_pred             EEEecCCcEEEEEeCCCC--------------c---c----------------c--------------------------
Q 006825          424 SFHGQERVRVRQYGKSCK--------------D---L----------------T--------------------------  444 (630)
Q Consensus       424 l~Sgs~Dg~VriWd~~~~--------------e---l----------------~--------------------------  444 (630)
                      +++|.+...+|+|+..-.              +   +                .                          
T Consensus       422 FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~  501 (764)
T KOG1063|consen  422 FVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELT  501 (764)
T ss_pred             eeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhcc
Confidence            888888899999975410              0   0                0                          


Q ss_pred             ------------ceeeeeEecccCcCEEEEEEccCCCEEEEEeCC-----CcEEEEECcCCceeeeeecccccCcccceE
Q 006825          445 ------------ALYKCQEIQAHNGSIWSIKFSLDGRYLASAGED-----CVIHVWQVVESERKGELLEKQEDGHLNMLL  507 (630)
Q Consensus       445 ------------~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~D-----gtIrVWDl~tg~~~~~l~~~~~~gh~~~V~  507 (630)
                                  -...++.|.||--.|++++.+|+|++|||+..-     -.|+||+..+...++.+     .+|.-.|+
T Consensus       502 ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L-----~~HsLTVT  576 (764)
T KOG1063|consen  502 EPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQEL-----EGHSLTVT  576 (764)
T ss_pred             CCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhhee-----cccceEEE
Confidence                        001134567899999999999999999999744     35999999888777764     89999999


Q ss_pred             EEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeCCCCceEEeccCCCCEEEEEEcCC-CeEEEEEC
Q 006825          508 LANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSM  586 (630)
Q Consensus       508 svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL~GHs~~V~sLafSPd-~~LaSgS~  586 (630)
                      .++|+||+++|++.+.|.++.+|...+...                  .......++.|+.-|.+..|+|+ .+|+|+|.
T Consensus       577 ~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~------------------~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSR  638 (764)
T KOG1063|consen  577 RLAFSPDGRYLLSVSRDRTVSLYEVQEDIK------------------DEFRFACLKAHTRIIWDCSWSPDEKYFATASR  638 (764)
T ss_pred             EEEECCCCcEEEEeecCceEEeeeeecccc------------------hhhhhccccccceEEEEcccCcccceeEEecC
Confidence            999999999999999999996665433110                  00112236789999999999999 88999999


Q ss_pred             CCcEEEEeCCCC--cEEEEE---ecCCceEEEE
Q 006825          587 DKTVRLWHLSSK--TCLKIF---SHSDYDISLV  614 (630)
Q Consensus       587 DgtVrIWDl~tg--~~l~t~---~H~~~V~sVa  614 (630)
                      |++|++|.....  +++..+   ++...|+.++
T Consensus       639 DK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~  671 (764)
T KOG1063|consen  639 DKKVKVWEEPDLRDKYISRFACLKFSLAVTAVA  671 (764)
T ss_pred             CceEEEEeccCchhhhhhhhchhccCCceeeEE
Confidence            999999999887  555443   4899999998

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.80  E-value=1e-18  Score=186.77  Aligned_cols=239  Identities=13%  Similarity=0.141  Sum_probs=175.9

Q ss_pred             CceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCC----------------ccccCCcceEEEeecCCCe--EEEecCC
Q 006825          369 GGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDT----------------SSEKGGRRSSSATDDSQDV--SFHGQER  430 (630)
Q Consensus       369 G~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt----------------~s~~gh~~~Vsa~~~s~d~--l~Sgs~D  430 (630)
                      +....+++ +|++.|.++++.|.|.++++|+-|.+.                .-.....+.|..+.++..+  ++..+..
T Consensus       157 ~shEi~l~-hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~  235 (641)
T KOG0772|consen  157 GSHEIQLK-HGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGS  235 (641)
T ss_pred             ccceEecc-CCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecC
Confidence            44556677 999999999999999999999998721                1134455667777777766  7777777


Q ss_pred             cEEEEEeCCCCccccee-------eeeEecccCcCEEEEEEccCC-CEEEEEeCCCcEEEEECcCCceeeeee-cccccC
Q 006825          431 VRVRQYGKSCKDLTALY-------KCQEIQAHNGSIWSIKFSLDG-RYLASAGEDCVIHVWQVVESERKGELL-EKQEDG  501 (630)
Q Consensus       431 g~VriWd~~~~el~~~~-------~v~tL~gHt~~V~sVaFSpDG-~~LASgS~DgtIrVWDl~tg~~~~~l~-~~~~~g  501 (630)
                      ..++++|-...++....       -...-+||...++|.+|+|+. ..++|++.|+++||||+...+...+++ .....+
T Consensus       236 aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g  315 (641)
T KOG0772|consen  236 AQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGG  315 (641)
T ss_pred             cceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCC
Confidence            78889987655432111       113447999999999999965 579999999999999998776555544 223345


Q ss_pred             cccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeCCCCceEEeccCCC--CEEEEEEcCC-
Q 006825          502 HLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLD--DVLDLSWSKS-  578 (630)
Q Consensus       502 h~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL~GHs~--~V~sLafSPd-  578 (630)
                      ..-.+..++|++|+++||+|..||.|.+|+.+...                   .....+.-..|..  .|+||+||++ 
T Consensus       316 ~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~-------------------v~p~~~vk~AH~~g~~Itsi~FS~dg  376 (641)
T KOG0772|consen  316 KRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRT-------------------VRPVMKVKDAHLPGQDITSISFSYDG  376 (641)
T ss_pred             cccCceeeecCCCcchhhhcccCCceeeeecCCcc-------------------cccceEeeeccCCCCceeEEEecccc
Confidence            56678899999999999999999999555432100                   0112333457887  8999999999 


Q ss_pred             CeEEEEECCCcEEEEeCCC-CcEEEEEe---cCCceEEEE-cCCCcEEEEecce
Q 006825          579 QHLLSSSMDKTVRLWHLSS-KTCLKIFS---HSDYDISLV-DRLMLRFAYGAFL  627 (630)
Q Consensus       579 ~~LaSgS~DgtVrIWDl~t-g~~l~t~~---H~~~V~sVa-s~~~~~lAsgs~~  627 (630)
                      ++|+|=+.|.++|+||++. .++|.++.   ..-.-+.++ +|+...+.+|...
T Consensus       377 ~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~  430 (641)
T KOG0772|consen  377 NYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSA  430 (641)
T ss_pred             chhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccc
Confidence            9999999999999999987 56777664   222223344 8888888888643

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.80  E-value=1.1e-19  Score=200.24  Aligned_cols=191  Identities=17%  Similarity=0.201  Sum_probs=167.8

Q ss_pred             eeeecCccceeEEEeec---ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccccC
Q 006825          333 EMCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKG  409 (630)
Q Consensus       333 ~~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~g  409 (630)
                      ..|.||...|.+|-|.+   .|++|+.+++|+ +||+..++..++|. ||+..+.+|+|+|-|.|.++|           
T Consensus        64 ~S~~~hespIeSl~f~~~E~LlaagsasgtiK-~wDleeAk~vrtLt-gh~~~~~sv~f~P~~~~~a~g-----------  130 (825)
T KOG0267|consen   64 TSLTGHESPIESLTFDTSERLLAAGSASGTIK-VWDLEEAKIVRTLT-GHLLNITSVDFHPYGEFFASG-----------  130 (825)
T ss_pred             heeeccCCcceeeecCcchhhhcccccCCcee-eeehhhhhhhhhhh-ccccCcceeeeccceEEeccc-----------
Confidence            35899999999999998   899999999999 99999999999999 999999999999998877554           


Q ss_pred             CcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCc
Q 006825          410 GRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESE  489 (630)
Q Consensus       410 h~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~  489 (630)
                                        +.|..+.+||.+-+.     |.+.+++|...|..++|+|+|+++++|++|.+++|||+..|+
T Consensus       131 ------------------Stdtd~~iwD~Rk~G-----c~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk  187 (825)
T KOG0267|consen  131 ------------------STDTDLKIWDIRKKG-----CSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGK  187 (825)
T ss_pred             ------------------cccccceehhhhccC-----ceeeecCCcceeEEEeecCCCceeeccCCcceeeeecccccc
Confidence                              555668999986443     788999999999999999999999999999999999999999


Q ss_pred             eeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeC-CCCceEEeccCCC
Q 006825          490 RKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLD  568 (630)
Q Consensus       490 ~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL~GHs~  568 (630)
                      ...+     +..|.+.+..+.|+|-.-++++|+.|+++                       ++|++ +-+.+........
T Consensus       188 ~~~e-----f~~~e~~v~sle~hp~e~Lla~Gs~d~tv-----------------------~f~dletfe~I~s~~~~~~  239 (825)
T KOG0267|consen  188 LSKE-----FKSHEGKVQSLEFHPLEVLLAPGSSDRTV-----------------------RFWDLETFEVISSGKPETD  239 (825)
T ss_pred             cccc-----cccccccccccccCchhhhhccCCCCcee-----------------------eeeccceeEEeeccCCccC
Confidence            8888     48999999999999999999999999999                       67776 3555666666688


Q ss_pred             CEEEEEEcCC-CeEEEEECC
Q 006825          569 DVLDLSWSKS-QHLLSSSMD  587 (630)
Q Consensus       569 ~V~sLafSPd-~~LaSgS~D  587 (630)
                      .|.+++|+|+ ..+++|-.+
T Consensus       240 ~v~~~~fn~~~~~~~~G~q~  259 (825)
T KOG0267|consen  240 GVRSLAFNPDGKIVLSGEQI  259 (825)
T ss_pred             CceeeeecCCceeeecCchh
Confidence            8999999999 666666544

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.79  E-value=1e-18  Score=172.91  Aligned_cols=232  Identities=19%  Similarity=0.128  Sum_probs=178.8

Q ss_pred             ecCccceeEEE--eec-ceEeecCCCccEecccCCCC---ceeEEecCCccCCEEEEEEcC--CCCeEEeecCCCCCccc
Q 006825          336 VGHSPIVQELM--RRQ-NVEEGNKDSFDLNNNGSSGG---GMKSKKKGSWFKSIRTVASSV--TGHKERRSSDERDTSSE  407 (630)
Q Consensus       336 ~GHs~~V~~La--fs~-~laSgS~D~tvr~vWD~~tG---~~~~~lk~gH~~~V~sVAfSp--dG~~lasgS~D~dt~s~  407 (630)
                      .+|...|..+.  |.. .||++|.|++|| |..+.+.   ..+.+|+ ||.++|..|+|..  -|..             
T Consensus         8 t~H~D~IHda~lDyygkrlATcsSD~tVk-If~v~~n~~s~ll~~L~-Gh~GPVwqv~wahPk~G~i-------------   72 (299)
T KOG1332|consen    8 TQHEDMIHDAQLDYYGKRLATCSSDGTVK-IFEVRNNGQSKLLAELT-GHSGPVWKVAWAHPKFGTI-------------   72 (299)
T ss_pred             hhhhhhhhHhhhhhhcceeeeecCCccEE-EEEEcCCCCceeeeEec-CCCCCeeEEeecccccCcE-------------
Confidence            35666665433  333 799999999999 9988653   4677898 9999999999975  4433             


Q ss_pred             cCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccC--CCEEEEEeCCCcEEEEEC
Q 006825          408 KGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLD--GRYLASAGEDCVIHVWQV  485 (630)
Q Consensus       408 ~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpD--G~~LASgS~DgtIrVWDl  485 (630)
                                      |++++.|++|.||.-..+...   ..++...|...|++|+|.|.  |-.||.|+.||+|.|.+.
T Consensus        73 ----------------LAScsYDgkVIiWke~~g~w~---k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~  133 (299)
T KOG1332|consen   73 ----------------LASCSYDGKVIIWKEENGRWT---KAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTY  133 (299)
T ss_pred             ----------------eeEeecCceEEEEecCCCchh---hhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEE
Confidence                            577888999999988777543   45678899999999999994  678999999999999998


Q ss_pred             cCC-ceeeeeecccccCcccceEEEEECCC---C-----------CEEEEeeCCCeeeeecccccccccccccCcccccc
Q 006825          486 VES-ERKGELLEKQEDGHLNMLLLANGSPE---P-----------TSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPE  550 (630)
Q Consensus       486 ~tg-~~~~~l~~~~~~gh~~~V~svafSpd---g-----------~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~  550 (630)
                      ... .-...   .....|.-.|.+++|.|.   |           +.|++|+.|..|                       
T Consensus       134 ~~~g~w~t~---ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~V-----------------------  187 (299)
T KOG1332|consen  134 DSSGGWTTS---KIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLV-----------------------  187 (299)
T ss_pred             cCCCCccch---hhhhccccccceeeecCcCCCccccccCcccccceeeccCCccce-----------------------
Confidence            754 21111   225789999999999986   4           558888888888                       


Q ss_pred             EEEeCCC---CceEEeccCCCCEEEEEEcCC-----CeEEEEECCCcEEEEeCCC--CcEEEEEe--cCCceEEEE-cCC
Q 006825          551 TVFALSD---KPICSFQGHLDDVLDLSWSKS-----QHLLSSSMDKTVRLWHLSS--KTCLKIFS--HSDYDISLV-DRL  617 (630)
Q Consensus       551 ~Vwdlsg---k~l~tL~GHs~~V~sLafSPd-----~~LaSgS~DgtVrIWDl~t--g~~l~t~~--H~~~V~sVa-s~~  617 (630)
                      +||..+.   +.-++|.+|++.|..++|.|.     .+|||+|.||+|.||-...  ++...++-  -.+.|+.+. +..
T Consensus       188 kiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~s  267 (299)
T KOG1332|consen  188 KIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLS  267 (299)
T ss_pred             eeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEEEEecc
Confidence            7777643   555679999999999999996     5899999999999998763  22222332  457788888 777


Q ss_pred             CcEEEEecce
Q 006825          618 MLRFAYGAFL  627 (630)
Q Consensus       618 ~~~lAsgs~~  627 (630)
                      +..|+.+..+
T Consensus       268 Gn~LaVs~Gd  277 (299)
T KOG1332|consen  268 GNILAVSGGD  277 (299)
T ss_pred             ccEEEEecCC
Confidence            8888777554

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.79  E-value=1.5e-16  Score=162.38  Aligned_cols=261  Identities=11%  Similarity=0.010  Sum_probs=175.3

Q ss_pred             eeEEEEcCCCceEeeecceeeecCccceeEEEeec---ce-EeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcC
Q 006825          315 WKKVKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQ---NV-EEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSV  390 (630)
Q Consensus       315 ~~~l~dv~TG~~lt~eef~~l~GHs~~V~~Lafs~---~l-aSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSp  390 (630)
                      ...+|+..|++.+     .++.+|.. +..++|+|   .+ ++++.|++++ +||..+++.+..+. .+.. +..++|+|
T Consensus        12 ~v~~~d~~t~~~~-----~~~~~~~~-~~~l~~~~dg~~l~~~~~~~~~v~-~~d~~~~~~~~~~~-~~~~-~~~~~~~~   82 (300)
T TIGR03866        12 TISVIDTATLEVT-----RTFPVGQR-PRGITLSKDGKLLYVCASDSDTIQ-VIDLATGEVIGTLP-SGPD-PELFALHP   82 (300)
T ss_pred             EEEEEECCCCceE-----EEEECCCC-CCceEECCCCCEEEEEECCCCeEE-EEECCCCcEEEecc-CCCC-ccEEEECC
Confidence            4567888888876     55555543 56788987   34 6778899999 99999999888776 3433 56799999


Q ss_pred             CCCeEEee-cCCC-----CCc--c---ccCCcceEEEeecCCCe--EEEecCCc-EEEEEeCCCCcccceeeeeEecccC
Q 006825          391 TGHKERRS-SDER-----DTS--S---EKGGRRSSSATDDSQDV--SFHGQERV-RVRQYGKSCKDLTALYKCQEIQAHN  456 (630)
Q Consensus       391 dG~~lasg-S~D~-----dt~--s---~~gh~~~Vsa~~~s~d~--l~Sgs~Dg-~VriWd~~~~el~~~~~v~tL~gHt  456 (630)
                      +|+++..+ ..++     +..  .   ...+...+..+.+++++  ++.+..++ .+..|+..+.+.     ...+. ..
T Consensus        83 ~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~-----~~~~~-~~  156 (300)
T TIGR03866        83 NGKILYIANEDDNLVTVIDIETRKVLAEIPVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEI-----VDNVL-VD  156 (300)
T ss_pred             CCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeE-----EEEEE-cC
Confidence            99977544 4444     111  1   01111234556777776  55555553 577788866542     22222 22


Q ss_pred             cCEEEEEEccCCCEEE-EEeCCCcEEEEECcCCceeeeeecccccCc--ccceEEEEECCCCCEEEEe-eCCCeeeeecc
Q 006825          457 GSIWSIKFSLDGRYLA-SAGEDCVIHVWQVVESERKGELLEKQEDGH--LNMLLLANGSPEPTSLSPK-HLDNHLEKKRR  532 (630)
Q Consensus       457 ~~V~sVaFSpDG~~LA-SgS~DgtIrVWDl~tg~~~~~l~~~~~~gh--~~~V~svafSpdg~~lasg-s~Dg~I~i~~~  532 (630)
                      ..+..++|+|+|++|+ ++..++.|++||+.+++.+..+.......+  ......++|+|++++++.+ ..++.+     
T Consensus       157 ~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i-----  231 (300)
T TIGR03866       157 QRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRV-----  231 (300)
T ss_pred             CCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeE-----
Confidence            3457899999999885 445699999999999877665421100111  1123468899999985543 345556     


Q ss_pred             cccccccccccCccccccEEEeC-CCCceEEeccCCCCEEEEEEcCC-CeEEEE-ECCCcEEEEeCCCCcEEEEEecCCc
Q 006825          533 GRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSWSKS-QHLLSS-SMDKTVRLWHLSSKTCLKIFSHSDY  609 (630)
Q Consensus       533 ~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL~GHs~~V~sLafSPd-~~LaSg-S~DgtVrIWDl~tg~~l~t~~H~~~  609 (630)
                                        .+|+. +++.+..+. +...+.+++|+|+ ++|+++ +.+++|+|||+.+++++..++....
T Consensus       232 ------------------~v~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~~~  292 (300)
T TIGR03866       232 ------------------AVVDAKTYEVLDYLL-VGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKVGRL  292 (300)
T ss_pred             ------------------EEEECCCCcEEEEEE-eCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEcccc
Confidence                              67777 455554443 4457899999999 788776 5699999999999999999985555


Q ss_pred             eEEEE
Q 006825          610 DISLV  614 (630)
Q Consensus       610 V~sVa  614 (630)
                      .+.|+
T Consensus       293 ~~~~~  297 (300)
T TIGR03866       293 PWGVV  297 (300)
T ss_pred             cceeE
Confidence            57665

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.79  E-value=2.1e-17  Score=181.59  Aligned_cols=279  Identities=17%  Similarity=0.111  Sum_probs=207.9

Q ss_pred             eEEEEcCCCceEeeecceeeecCccceeEEEeec--------------ceEeecCCCccEecccCCCCceeEEec-----
Q 006825          316 KKVKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQ--------------NVEEGNKDSFDLNNNGSSGGGMKSKKK-----  376 (630)
Q Consensus       316 ~~l~dv~TG~~lt~eef~~l~GHs~~V~~Lafs~--------------~laSgS~D~tvr~vWD~~tG~~~~~lk-----  376 (630)
                      ..+||++.=..+  -....+.-|+..||.+---|              -..+.|.|+||| +||++.+.--.+++     
T Consensus       348 lYvWDvrD~~kv--gk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIR-lW~l~~ctnn~vyrRNils  424 (1080)
T KOG1408|consen  348 LYVWDVRDVNKV--GKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIR-LWDLAFCTNNQVYRRNILS  424 (1080)
T ss_pred             EEEEeccccccc--cceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEE-Eeecccccccceeecccch
Confidence            356776632221  01124556777777766544              477899999999 99987632111100     


Q ss_pred             -------------------------------CCccCCEEEEEEcCCCCeEEeecCCC-----------CCccccCCcceE
Q 006825          377 -------------------------------GSWFKSIRTVASSVTGHKERRSSDER-----------DTSSEKGGRRSS  414 (630)
Q Consensus       377 -------------------------------~gH~~~V~sVAfSpdG~~lasgS~D~-----------dt~s~~gh~~~V  414 (630)
                                                     -+-.-.|++|+.||+|++||+|...+           .+.....|...|
T Consensus       425 ~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEi  504 (1080)
T KOG1408|consen  425 ANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEI  504 (1080)
T ss_pred             hhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhhhhhheeccccee
Confidence                                           02233679999999999999886655           233477899999


Q ss_pred             EEeecCCCe-----EEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCC--CEEEEEeCCCcEEEEECcC
Q 006825          415 SATDDSQDV-----SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDG--RYLASAGEDCVIHVWQVVE  487 (630)
Q Consensus       415 sa~~~s~d~-----l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG--~~LASgS~DgtIrVWDl~t  487 (630)
                      .|+.++...     |++++.|..|++||+.-.    ..++++|.+|...|++|+|.-.|  ..++|+|.|+.|..--...
T Consensus       505 lcLeyS~p~~~~kLLASasrdRlIHV~Dv~rn----y~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk  580 (1080)
T KOG1408|consen  505 LCLEYSFPVLTNKLLASASRDRLIHVYDVKRN----YDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQK  580 (1080)
T ss_pred             EEEeecCchhhhHhhhhccCCceEEEEecccc----cchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhcc
Confidence            999999765     899999999999998643    34689999999999999999877  7899999999876433322


Q ss_pred             CceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeC-CCCceEEecc-
Q 006825          488 SERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQG-  565 (630)
Q Consensus       488 g~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL~G-  565 (630)
                      ......+......-....++.++..|..+++++++.|.+|                       +||++ +|+..+.|+| 
T Consensus       581 ~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrni-----------------------rif~i~sgKq~k~FKgs  637 (1080)
T KOG1408|consen  581 ASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNI-----------------------RIFDIESGKQVKSFKGS  637 (1080)
T ss_pred             ccCceeccccccccccceEEEeeeCCCcceEEEEecccce-----------------------EEEeccccceeeeeccc
Confidence            2222222111111123567899999999999999999999                       88998 8899999976 


Q ss_pred             --CCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCCCcEEEEEe-cCCceEEEE-cCCCcEEEEe
Q 006825          566 --HLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYDISLV-DRLMLRFAYG  624 (630)
Q Consensus       566 --Hs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg~~l~t~~-H~~~V~sVa-s~~~~~lAsg  624 (630)
                        |.+..-.|...|. .||++.+.|+++.++|..+|+|+.+.. |...|+.+. .++-..|.+.
T Consensus       638 ~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISv  701 (1080)
T KOG1408|consen  638 RDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISV  701 (1080)
T ss_pred             ccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecccchhheee
Confidence              6677888899999 999999999999999999999998776 999999999 5554444443

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.79  E-value=5.6e-18  Score=171.22  Aligned_cols=226  Identities=14%  Similarity=0.146  Sum_probs=176.5

Q ss_pred             ecCccceeEEEeec----ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccccCCc
Q 006825          336 VGHSPIVQELMRRQ----NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGR  411 (630)
Q Consensus       336 ~GHs~~V~~Lafs~----~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~  411 (630)
                      -||.-.|..+.+-|    ...++|.|.|++ |||.+|-+..-.++  ..+.|++-|+||-                    
T Consensus        98 ~~Hky~iss~~WyP~DtGmFtssSFDhtlK-VWDtnTlQ~a~~F~--me~~VYshamSp~--------------------  154 (397)
T KOG4283|consen   98 NGHKYAISSAIWYPIDTGMFTSSSFDHTLK-VWDTNTLQEAVDFK--MEGKVYSHAMSPM--------------------  154 (397)
T ss_pred             ccceeeeeeeEEeeecCceeecccccceEE-EeecccceeeEEee--cCceeehhhcChh--------------------
Confidence            47888999999999    688999999999 99999988887776  4567777777773                    


Q ss_pred             ceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCC-EEEEEeCCCcEEEEECcCC-c
Q 006825          412 RSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGR-YLASAGEDCVIHVWQVVES-E  489 (630)
Q Consensus       412 ~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~-~LASgS~DgtIrVWDl~tg-~  489 (630)
                            +.+...+++|..+.+||+-|++.+.     +.++|.||.+.|.+|.|+|... .|||||.||+||+||++.. .
T Consensus       155 ------a~sHcLiA~gtr~~~VrLCDi~SGs-----~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasg  223 (397)
T KOG4283|consen  155 ------AMSHCLIAAGTRDVQVRLCDIASGS-----FSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASG  223 (397)
T ss_pred             ------hhcceEEEEecCCCcEEEEeccCCc-----ceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccc
Confidence                  2233447889999999999998885     4689999999999999999655 6899999999999999765 2


Q ss_pred             eeeeee---------cccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccc-cc---------cccCccc---
Q 006825          490 RKGELL---------EKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINR-KS---------LSLDHMV---  547 (630)
Q Consensus       490 ~~~~l~---------~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~-~s---------~s~d~~i---  547 (630)
                      +...+-         ......|.+.|+.++|+.++.++++++.|..+++|+...+.+. +.         ..+.-.+   
T Consensus       224 cf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~~~  303 (397)
T KOG4283|consen  224 CFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQTTSFAVHIQSM  303 (397)
T ss_pred             eeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeecccCcccccccccccccccccceEEEeec
Confidence            332221         1123578889999999999999999999999999997552221 00         0000000   


Q ss_pred             -------cc----cEEEeC-CCCceEEeccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeC
Q 006825          548 -------VP----ETVFAL-SDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHL  595 (630)
Q Consensus       548 -------~~----~~Vwdl-sgk~l~tL~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl  595 (630)
                             .|    ..+..+ .+..++.+.+|-..|.|.+|-|+ +.+.+|.+|+.|..|-.
T Consensus       304 ~s~vfv~~p~~~~lall~~~sgs~ir~l~~h~k~i~c~~~~~~fq~~~tg~~d~ni~~w~p  364 (397)
T KOG4283|consen  304 DSDVFVLFPNDGSLALLNLLEGSFVRRLSTHLKRINCAAYRPDFEQCFTGDMNGNIYMWSP  364 (397)
T ss_pred             ccceEEEEecCCeEEEEEccCceEEEeeecccceeeEEeecCchhhhhccccCCccccccc
Confidence                   00    033444 67889999999999999999999 99999999999999976

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.78  E-value=2.8e-18  Score=182.74  Aligned_cols=257  Identities=16%  Similarity=0.125  Sum_probs=206.5

Q ss_pred             eecCccceeEEEeec---ceEeecCCCccEecccCCCCc---eeEEec-CCccCCEEEEEEcCCCCeEEeecCCC-----
Q 006825          335 CVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGG---MKSKKK-GSWFKSIRTVASSVTGHKERRSSDER-----  402 (630)
Q Consensus       335 l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~---~~~~lk-~gH~~~V~sVAfSpdG~~lasgS~D~-----  402 (630)
                      ...|...|-++.++.   .+.+|+. +-|+ |||+....   .+..|. ..-...|+++.+.|||+.|..|+.-.     
T Consensus       415 tL~HGEvVcAvtIS~~trhVyTgGk-gcVK-VWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiW  492 (705)
T KOG0639|consen  415 TLAHGEVVCAVTISNPTRHVYTGGK-GCVK-VWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIW  492 (705)
T ss_pred             hhccCcEEEEEEecCCcceeEecCC-CeEE-EeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeee
Confidence            356999999999887   6777655 7789 99996532   122221 02456799999999999998887633     


Q ss_pred             CCcc--------ccCCcceEEEeecCCCe--EEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEE
Q 006825          403 DTSS--------EKGGRRSSSATDDSQDV--SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLA  472 (630)
Q Consensus       403 dt~s--------~~gh~~~Vsa~~~s~d~--l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LA  472 (630)
                      |...        +....-...+++.++|.  +|+...||.|+|||+....     +++.|+||++.+.||.+++||..|.
T Consensus       493 DLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~-----~VrqfqGhtDGascIdis~dGtklW  567 (705)
T KOG0639|consen  493 DLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQT-----LVRQFQGHTDGASCIDISKDGTKLW  567 (705)
T ss_pred             eccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccce-----eeecccCCCCCceeEEecCCCceee
Confidence            1111        12222244567777776  8999999999999997653     6899999999999999999999999


Q ss_pred             EEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEE
Q 006825          473 SAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETV  552 (630)
Q Consensus       473 SgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~V  552 (630)
                      |||.|.+||.||++++..+.+      ......|+++..+|.+.+++.|-..+.+                       .|
T Consensus       568 TGGlDntvRcWDlregrqlqq------hdF~SQIfSLg~cP~~dWlavGMens~v-----------------------ev  618 (705)
T KOG0639|consen  568 TGGLDNTVRCWDLREGRQLQQ------HDFSSQIFSLGYCPTGDWLAVGMENSNV-----------------------EV  618 (705)
T ss_pred             cCCCccceeehhhhhhhhhhh------hhhhhhheecccCCCccceeeecccCcE-----------------------EE
Confidence            999999999999998876655      3445789999999999999999888876                       44


Q ss_pred             EeCCCCceEEeccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCCCcEEEEEecCCceEEEE-cCCCcEEEEecce
Q 006825          553 FALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYDISLV-DRLMLRFAYGAFL  627 (630)
Q Consensus       553 wdlsgk~l~tL~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg~~l~t~~H~~~V~sVa-s~~~~~lAsgs~~  627 (630)
                      ...++..-..+.-|..-|++|.|.+- ++++|.+.|..+..|.+..|.-+...+..+.|.|.. +.+..++++|+..
T Consensus       619 lh~skp~kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqskE~SsVlsCDIS~ddkyIVTGSGd  695 (705)
T KOG0639|consen  619 LHTSKPEKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISFDDKYIVTGSGD  695 (705)
T ss_pred             EecCCccceeecccccEEEEEEecccCceeeecCchhhhhhccCccccceeeccccCcceeeeeccCceEEEecCCC
Confidence            45566667778889999999999999 999999999999999999999888888999999988 8888899988754

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.78  E-value=1.4e-17  Score=169.90  Aligned_cols=226  Identities=21%  Similarity=0.194  Sum_probs=166.3

Q ss_pred             EecCCccCCEEEEEEcCCCCeEEeecCCCC-----C-------------ccccCCcceEEEeecCCCeEEEecCCcEEEE
Q 006825          374 KKKGSWFKSIRTVASSVTGHKERRSSDERD-----T-------------SSEKGGRRSSSATDDSQDVSFHGQERVRVRQ  435 (630)
Q Consensus       374 ~lk~gH~~~V~sVAfSpdG~~lasgS~D~d-----t-------------~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~Vri  435 (630)
                      .|| ||.+.|.+++||.||++|++.+.|+.     +             .-+.+|...|.+..++...+++.-...++++
T Consensus        81 ~LK-gH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~v  159 (420)
T KOG2096|consen   81 VLK-GHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCV  159 (420)
T ss_pred             hhh-ccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEE
Confidence            566 99999999999999999999999981     1             1167788888888888888888878889999


Q ss_pred             EeCCCCc---ccc----eeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEE
Q 006825          436 YGKSCKD---LTA----LYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLL  508 (630)
Q Consensus       436 Wd~~~~e---l~~----~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~s  508 (630)
                      |...-++   +..    ......-+.|.-.|..+-..-.+++|+|++.|.+|.||++. |+.+..+     .......+.
T Consensus       160 yk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~i-----dtnq~~n~~  233 (420)
T KOG2096|consen  160 YKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSI-----DTNQSSNYD  233 (420)
T ss_pred             EEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeee-----ccccccccc
Confidence            9754221   110    01111224577788888888899999999999999999998 7776664     333344567


Q ss_pred             EEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeCCC-----CceEEeccCCCCEEEEEEcCC-CeEE
Q 006825          509 ANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSD-----KPICSFQGHLDDVLDLSWSKS-QHLL  582 (630)
Q Consensus       509 vafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsg-----k~l~tL~GHs~~V~sLafSPd-~~La  582 (630)
                      .+.+|+|+++++++-.--+++|.                   .+|.-.|     +.+..|+||...|+.++|+|+ ..++
T Consensus       234 aavSP~GRFia~~gFTpDVkVwE-------------------~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~v  294 (420)
T KOG2096|consen  234 AAVSPDGRFIAVSGFTPDVKVWE-------------------PIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAV  294 (420)
T ss_pred             eeeCCCCcEEEEecCCCCceEEE-------------------EEeccCcchhhhhhhheeccchhheeeeeeCCCcceeE
Confidence            88999999999988777674443                   2222233     356789999999999999999 9999


Q ss_pred             EEECCCcEEEEeCCC-------CcEEEEEe---c---CCceEEEE-cCCCcEEEEecc
Q 006825          583 SSSMDKTVRLWHLSS-------KTCLKIFS---H---SDYDISLV-DRLMLRFAYGAF  626 (630)
Q Consensus       583 SgS~DgtVrIWDl~t-------g~~l~t~~---H---~~~V~sVa-s~~~~~lAsgs~  626 (630)
                      |.|.||++||||+.-       -+.|+++.   |   ..++ -++ +|.+..||.+..
T Consensus       295 tvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~-RL~lsP~g~~lA~s~g  351 (420)
T KOG2096|consen  295 TVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPV-RLELSPSGDSLAVSFG  351 (420)
T ss_pred             EEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCce-EEEeCCCCcEEEeecC
Confidence            999999999999852       23344442   2   2333 455 777777776643

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.78  E-value=4.5e-18  Score=176.54  Aligned_cols=205  Identities=14%  Similarity=0.157  Sum_probs=158.3

Q ss_pred             eeeecCccceeEEEeec-----ceEeecCCCccEecccCCC----------------CceeEEecCCccCCEEEEEEcCC
Q 006825          333 EMCVGHSPIVQELMRRQ-----NVEEGNKDSFDLNNNGSSG----------------GGMKSKKKGSWFKSIRTVASSVT  391 (630)
Q Consensus       333 ~~l~GHs~~V~~Lafs~-----~laSgS~D~tvr~vWD~~t----------------G~~~~~lk~gH~~~V~sVAfSpd  391 (630)
                      ...++|.+.|+.+.-++     ..|+=|.-+.|. ||++..                .+.+.++. +|...=++++|||-
T Consensus       145 ~~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~-Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~-ghk~EGy~LdWSp~  222 (440)
T KOG0302|consen  145 MKSIPHYGGINRVRVSRLGNEVLCASWSENGRVQ-VWDLAPHLNALSEPGLEVKDSEFRPLFTFN-GHKGEGYGLDWSPI  222 (440)
T ss_pred             ccccccccccceeeecccCCcceeeeecccCcEE-EEEchhhhhhhcCccccccccccCceEEec-ccCccceeeecccc
Confidence            34678888888877665     466667778898 998742                12233333 44444444444441


Q ss_pred             CCeEEeecCCCCCccccCCcceEEEeecCCCe-EEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccC-CC
Q 006825          392 GHKERRSSDERDTSSEKGGRRSSSATDDSQDV-SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLD-GR  469 (630)
Q Consensus       392 G~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~-l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpD-G~  469 (630)
                                                   ..+ +++|.--+.|++|...++...  .-.+.|.+|+.+|..|+|||. ..
T Consensus       223 -----------------------------~~g~LlsGDc~~~I~lw~~~~g~W~--vd~~Pf~gH~~SVEDLqWSptE~~  271 (440)
T KOG0302|consen  223 -----------------------------KTGRLLSGDCVKGIHLWEPSTGSWK--VDQRPFTGHTKSVEDLQWSPTEDG  271 (440)
T ss_pred             -----------------------------cccccccCccccceEeeeeccCcee--ecCccccccccchhhhccCCccCc
Confidence                                         123 677777788999988776532  123568899999999999994 56


Q ss_pred             EEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccc
Q 006825          470 YLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVP  549 (630)
Q Consensus       470 ~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~  549 (630)
                      .|||||.|++|+|||++.+.....+.   ...|..-|..|.|+..-.+|++|+.||++                      
T Consensus       272 vfaScS~DgsIrIWDiRs~~~~~~~~---~kAh~sDVNVISWnr~~~lLasG~DdGt~----------------------  326 (440)
T KOG0302|consen  272 VFASCSCDGSIRIWDIRSGPKKAAVS---TKAHNSDVNVISWNRREPLLASGGDDGTL----------------------  326 (440)
T ss_pred             eEEeeecCceEEEEEecCCCccceeE---eeccCCceeeEEccCCcceeeecCCCceE----------------------
Confidence            89999999999999999885443332   37888999999999988899999999999                      


Q ss_pred             cEEEeC----CCCceEEeccCCCCEEEEEEcCC--CeEEEEECCCcEEEEeCC
Q 006825          550 ETVFAL----SDKPICSFQGHLDDVLDLSWSKS--QHLLSSSMDKTVRLWHLS  596 (630)
Q Consensus       550 ~~Vwdl----sgk~l~tL~GHs~~V~sLafSPd--~~LaSgS~DgtVrIWDl~  596 (630)
                       +||++    .++++.+|+-|..+|++|.|+|.  ..|+.++.|.+|.|||+.
T Consensus       327 -~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDls  378 (440)
T KOG0302|consen  327 -SIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLS  378 (440)
T ss_pred             -EEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEee
Confidence             66766    46899999999999999999996  899999999999999985

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.78  E-value=1.8e-18  Score=192.02  Aligned_cols=204  Identities=18%  Similarity=0.276  Sum_probs=168.0

Q ss_pred             ecceEeecCCCccEecccCCC---CceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeE
Q 006825          348 RQNVEEGNKDSFDLNNNGSSG---GGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVS  424 (630)
Q Consensus       348 s~~laSgS~D~tvr~vWD~~t---G~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l  424 (630)
                      ++.||+++.-+.|- +||+..   .+.+..+. .|.+.|.++.|++-                            .+..+
T Consensus       100 ~NlIAT~s~nG~i~-vWdlnk~~rnk~l~~f~-EH~Rs~~~ldfh~t----------------------------ep~il  149 (839)
T KOG0269|consen  100 SNLIATCSTNGVIS-VWDLNKSIRNKLLTVFN-EHERSANKLDFHST----------------------------EPNIL  149 (839)
T ss_pred             hhhheeecCCCcEE-EEecCccccchhhhHhh-hhccceeeeeeccC----------------------------CccEE
Confidence            34689999988888 999977   44555777 89999999999884                            34557


Q ss_pred             EEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEcc-CCCEEEEEeCCCcEEEEECcCCceeeeeecccccCcc
Q 006825          425 FHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSL-DGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHL  503 (630)
Q Consensus       425 ~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSp-DG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~  503 (630)
                      ++|++|++|++||++.++     ...++.+....|..|+|+| .+.+++++.+.|.+++||++...+...    .+..|.
T Consensus       150 iSGSQDg~vK~~DlR~~~-----S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~----k~~AH~  220 (839)
T KOG0269|consen  150 ISGSQDGTVKCWDLRSKK-----SKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEK----KLTAHN  220 (839)
T ss_pred             EecCCCceEEEEeeeccc-----ccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHH----Hhhccc
Confidence            999999999999998775     3567888899999999999 788999999999999999986653322    158999


Q ss_pred             cceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeCCC---CceEEeccCCCCEEEEEEcCC--
Q 006825          504 NMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSD---KPICSFQGHLDDVLDLSWSKS--  578 (630)
Q Consensus       504 ~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsg---k~l~tL~GHs~~V~sLafSPd--  578 (630)
                      ++|.++.|+|++.+||+|+.|+.|                       +||+.++   +++.++. -..+|..|.|-|.  
T Consensus       221 GpV~c~nwhPnr~~lATGGRDK~v-----------------------kiWd~t~~~~~~~~tIn-Tiapv~rVkWRP~~~  276 (839)
T KOG0269|consen  221 GPVLCLNWHPNREWLATGGRDKMV-----------------------KIWDMTDSRAKPKHTIN-TIAPVGRVKWRPARS  276 (839)
T ss_pred             CceEEEeecCCCceeeecCCCccE-----------------------EEEeccCCCccceeEEe-ecceeeeeeeccCcc
Confidence            999999999999999999999999                       7888753   2333332 3467999999998  


Q ss_pred             CeEEEEEC--CCcEEEEeCCCC-cEEEEEe-cCCceEEEE
Q 006825          579 QHLLSSSM--DKTVRLWHLSSK-TCLKIFS-HSDYDISLV  614 (630)
Q Consensus       579 ~~LaSgS~--DgtVrIWDl~tg-~~l~t~~-H~~~V~sVa  614 (630)
                      .+|+++++  |-.|+|||++-. -+..+|. |.+.|+.++
T Consensus       277 ~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~  316 (839)
T KOG0269|consen  277 YHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIA  316 (839)
T ss_pred             chhhhhhccccceEEEEeeccccccceeeeccCcccccee
Confidence            67888876  889999999764 4567777 999999999

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.78  E-value=1.2e-18  Score=193.50  Aligned_cols=204  Identities=20%  Similarity=0.235  Sum_probs=166.5

Q ss_pred             eeeecCccceeEEEeec----ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCcccc
Q 006825          333 EMCVGHSPIVQELMRRQ----NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEK  408 (630)
Q Consensus       333 ~~l~GHs~~V~~Lafs~----~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~  408 (630)
                      ..|..|+..|.+|.|++    +|+|||.|++|+ +||+....-..++. +-...|+.|+|+|.-                
T Consensus       127 ~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK-~~DlR~~~S~~t~~-~nSESiRDV~fsp~~----------------  188 (839)
T KOG0269|consen  127 TVFNEHERSANKLDFHSTEPNILISGSQDGTVK-CWDLRSKKSKSTFR-SNSESIRDVKFSPGY----------------  188 (839)
T ss_pred             hHhhhhccceeeeeeccCCccEEEecCCCceEE-EEeeeccccccccc-ccchhhhceeeccCC----------------
Confidence            56788999999999987    799999999999 99999999999998 899999999999941                


Q ss_pred             CCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCC
Q 006825          409 GGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVES  488 (630)
Q Consensus       409 gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg  488 (630)
                                  ++.++++.+.|.+++||++..+.    +...|.+|.++|.|+.|+|++.+|||||.|++|||||+.+.
T Consensus       189 ------------~~~F~s~~dsG~lqlWDlRqp~r----~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~  252 (839)
T KOG0269|consen  189 ------------GNKFASIHDSGYLQLWDLRQPDR----CEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDS  252 (839)
T ss_pred             ------------CceEEEecCCceEEEeeccCchh----HHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCC
Confidence                        23367788889999999976643    45568999999999999999999999999999999999866


Q ss_pred             ceeeeeecccccCcccceEEEEECCCCC-EEEEee--CCCeeeeecccccccccccccCccccccEEEeCCC--CceEEe
Q 006825          489 ERKGELLEKQEDGHLNMLLLANGSPEPT-SLSPKH--LDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSD--KPICSF  563 (630)
Q Consensus       489 ~~~~~l~~~~~~gh~~~V~svafSpdg~-~lasgs--~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsg--k~l~tL  563 (630)
                      +.....    ......+|..|.|-|+-. .|++++  .|..|                       .||++..  -+.++|
T Consensus       253 ~~~~~~----tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV-----------------------~VWDvrRPYIP~~t~  305 (839)
T KOG0269|consen  253 RAKPKH----TINTIAPVGRVKWRPARSYHLATCSMVVDTSV-----------------------HVWDVRRPYIPYATF  305 (839)
T ss_pred             Ccccee----EEeecceeeeeeeccCccchhhhhhccccceE-----------------------EEEeeccccccceee
Confidence            544332    133446788999999854 455543  34455                       7888854  467889


Q ss_pred             ccCCCCEEEEEEcC-C-CeEEEEECCCcEEEEeCCC
Q 006825          564 QGHLDDVLDLSWSK-S-QHLLSSSMDKTVRLWHLSS  597 (630)
Q Consensus       564 ~GHs~~V~sLafSP-d-~~LaSgS~DgtVrIWDl~t  597 (630)
                      ..|+..|+.++|-. | ..|.+++.|++|..-..+.
T Consensus       306 ~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~kn  341 (839)
T KOG0269|consen  306 LEHTDSVTGIAWDSGDRINLWSCSKDGTVLQHLFKN  341 (839)
T ss_pred             eccCccccceeccCCCceeeEeecCccHHHHhhhhc
Confidence            99999999999965 4 8899999999987655443

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.78  E-value=7.4e-18  Score=166.88  Aligned_cols=238  Identities=19%  Similarity=0.198  Sum_probs=173.9

Q ss_pred             CcEEEEeeecCCCceeEEEEcCCCceEeeecceeeecCccceeEEEeec-----ceEeecCCCccEecccCCCCce--eE
Q 006825          301 GKEFVVNEIQEDGTWKKVKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQ-----NVEEGNKDSFDLNNNGSSGGGM--KS  373 (630)
Q Consensus       301 G~~~~v~e~~~dg~~~~l~dv~TG~~lt~eef~~l~GHs~~V~~Lafs~-----~laSgS~D~tvr~vWD~~tG~~--~~  373 (630)
                      |+++++..-  |++ .++.++..+.+.  ..+.+|.||+++|++++|..     .|||.|.|+.|. ||.-.+|+-  ..
T Consensus        23 gkrlATcsS--D~t-VkIf~v~~n~~s--~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVI-iWke~~g~w~k~~   96 (299)
T KOG1332|consen   23 GKRLATCSS--DGT-VKIFEVRNNGQS--KLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVI-IWKEENGRWTKAY   96 (299)
T ss_pred             cceeeeecC--Ccc-EEEEEEcCCCCc--eeeeEecCCCCCeeEEeecccccCcEeeEeecCceEE-EEecCCCchhhhh
Confidence            445444332  444 445555533321  11378999999999999964     899999999999 999888853  33


Q ss_pred             EecCCccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEec
Q 006825          374 KKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQ  453 (630)
Q Consensus       374 ~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~  453 (630)
                      ... .|..+|++|+|.|.+.-                           -.|+.++.||+|.+.+.....  .........
T Consensus        97 e~~-~h~~SVNsV~wapheyg---------------------------l~LacasSDG~vsvl~~~~~g--~w~t~ki~~  146 (299)
T KOG1332|consen   97 EHA-AHSASVNSVAWAPHEYG---------------------------LLLACASSDGKVSVLTYDSSG--GWTTSKIVF  146 (299)
T ss_pred             hhh-hhcccceeecccccccc---------------------------eEEEEeeCCCcEEEEEEcCCC--Cccchhhhh
Confidence            444 89999999999996431                           126888899999998876541  112334578


Q ss_pred             ccCcCEEEEEEccC---C-----------CEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCC----C
Q 006825          454 AHNGSIWSIKFSLD---G-----------RYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPE----P  515 (630)
Q Consensus       454 gHt~~V~sVaFSpD---G-----------~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpd----g  515 (630)
                      +|.-.|++++|.|-   |           +.|+|||.|..|+||....+.-+.+   ..+.+|...|..++|.|.    -
T Consensus       147 aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e---~~l~~H~dwVRDVAwaP~~gl~~  223 (299)
T KOG1332|consen  147 AHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLE---RTLEGHKDWVRDVAWAPSVGLPK  223 (299)
T ss_pred             ccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhh---hhhhhcchhhhhhhhccccCCCc
Confidence            89999999999995   5           6799999999999999988732222   236899999999999997    3


Q ss_pred             CEEEEeeCCCeeeeecccccccccccccCccccccEEEeCCCCceEEeccCCCCEEEEEEcCC-CeEEEEECCCcEEEEe
Q 006825          516 TSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWH  594 (630)
Q Consensus       516 ~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWD  594 (630)
                      .+|++++.|+++-+|......                   .......|+.....+..+.||+. ++|+.++.|+.|.+|.
T Consensus       224 s~iAS~SqDg~viIwt~~~e~-------------------e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwk  284 (299)
T KOG1332|consen  224 STIASCSQDGTVIIWTKDEEY-------------------EPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWK  284 (299)
T ss_pred             eeeEEecCCCcEEEEEecCcc-------------------CcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEE
Confidence            679999999999554432100                   00111223335577999999999 8999999999999997


Q ss_pred             CC
Q 006825          595 LS  596 (630)
Q Consensus       595 l~  596 (630)
                      -.
T Consensus       285 e~  286 (299)
T KOG1332|consen  285 EN  286 (299)
T ss_pred             eC
Confidence            54

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.78  E-value=7e-17  Score=158.24  Aligned_cols=229  Identities=17%  Similarity=0.147  Sum_probs=181.8

Q ss_pred             ceeeecCccceeEEEeec---ceEeecCCCccEecccCC--CCce---eEEecCCccCCEEEEEEcCC----CCeEEeec
Q 006825          332 FEMCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSS--GGGM---KSKKKGSWFKSIRTVASSVT----GHKERRSS  399 (630)
Q Consensus       332 f~~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~--tG~~---~~~lk~gH~~~V~sVAfSpd----G~~lasgS  399 (630)
                      +.+-..|.+.|.+.+++|   .+|+||+|++|+ +--.+  |...   -..+. .|.+.|+.+||-.+    |..|++++
T Consensus        82 ~kr~khhkgsiyc~~ws~~geliatgsndk~ik-~l~fn~dt~~~~g~dle~n-mhdgtirdl~fld~~~s~~~il~s~g  159 (350)
T KOG0641|consen   82 CKRNKHHKGSIYCTAWSPCGELIATGSNDKTIK-VLPFNADTCNATGHDLEFN-MHDGTIRDLAFLDDPESGGAILASAG  159 (350)
T ss_pred             eeeccccCccEEEEEecCccCeEEecCCCceEE-EEecccccccccCcceeee-ecCCceeeeEEecCCCcCceEEEecC
Confidence            566778999999999999   899999999999 54332  2221   22455 79999999999753    45677765


Q ss_pred             CCC--------CC----ccccCCcceEEEe-ecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecc--c-----CcCE
Q 006825          400 DER--------DT----SSEKGGRRSSSAT-DDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQA--H-----NGSI  459 (630)
Q Consensus       400 ~D~--------dt----~s~~gh~~~Vsa~-~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~g--H-----t~~V  459 (630)
                      ...        .+    ..+.||+.-|.++ .++...+++|++|.+||+||+....     ++.++..  |     ..+|
T Consensus       160 agdc~iy~tdc~~g~~~~a~sghtghilalyswn~~m~~sgsqdktirfwdlrv~~-----~v~~l~~~~~~~glessav  234 (350)
T KOG0641|consen  160 AGDCKIYITDCGRGQGFHALSGHTGHILALYSWNGAMFASGSQDKTIRFWDLRVNS-----CVNTLDNDFHDGGLESSAV  234 (350)
T ss_pred             CCcceEEEeecCCCCcceeecCCcccEEEEEEecCcEEEccCCCceEEEEeeeccc-----eeeeccCcccCCCccccee
Confidence            443        11    2277888777664 5666669999999999999986542     4554432  2     3679


Q ss_pred             EEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeeccccccccc
Q 006825          460 WSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRK  539 (630)
Q Consensus       460 ~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~  539 (630)
                      .+++..|.|++|++|-.|..+.+||++.+..++.     +..|...|.++.|+|...++++++.|..|            
T Consensus       235 aav~vdpsgrll~sg~~dssc~lydirg~r~iq~-----f~phsadir~vrfsp~a~yllt~syd~~i------------  297 (350)
T KOG0641|consen  235 AAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQR-----FHPHSADIRCVRFSPGAHYLLTCSYDMKI------------  297 (350)
T ss_pred             EEEEECCCcceeeeccCCCceEEEEeeCCceeee-----eCCCccceeEEEeCCCceEEEEecccceE------------
Confidence            9999999999999999999999999999988887     47899999999999999999999999999            


Q ss_pred             ccccCccccccEEEeCCCC-----ceEEeccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeC
Q 006825          540 SLSLDHMVVPETVFALSDK-----PICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHL  595 (630)
Q Consensus       540 s~s~d~~i~~~~Vwdlsgk-----~l~tL~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl  595 (630)
                                 ++-++.|.     ++.....|.+.+..+.|+|. --+++.|.|+|+.+|-+
T Consensus       298 -----------kltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~  348 (350)
T KOG0641|consen  298 -----------KLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWAL  348 (350)
T ss_pred             -----------EEeecccchhhcCceEEEEeccCceEEEEecCccceeeeccCcceEEEecc
Confidence                       55555443     34455679999999999998 67889999999999965

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.77  E-value=2.8e-17  Score=167.72  Aligned_cols=271  Identities=13%  Similarity=0.032  Sum_probs=191.1

Q ss_pred             ceeeecCccceeEEEeec---ceEeecCCCccEecccCCCCce------eEEecCCccCCEEEEEEcCCCCeEEeecCCC
Q 006825          332 FEMCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGM------KSKKKGSWFKSIRTVASSVTGHKERRSSDER  402 (630)
Q Consensus       332 f~~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~------~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~  402 (630)
                      ...|.||...|+.|+|+.   .||+.+.|++|| +|++.--+.      ...+..+|   -+.|+|+||-+-++-.-..+
T Consensus        79 ~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir-~w~~~DF~~~eHr~~R~nve~dh---pT~V~FapDc~s~vv~~~~g  154 (420)
T KOG2096|consen   79 VSVLKGHKKEVTDVAFSSDGKKLATISGDRSIR-LWDVRDFENKEHRCIRQNVEYDH---PTRVVFAPDCKSVVVSVKRG  154 (420)
T ss_pred             hhhhhccCCceeeeEEcCCCceeEEEeCCceEE-EEecchhhhhhhhHhhccccCCC---ceEEEECCCcceEEEEEccC
Confidence            357899999999999998   899999999999 999875332      12222233   35689999877544332211


Q ss_pred             ------------C------------CccccCCcceEEEeec--CCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccC
Q 006825          403 ------------D------------TSSEKGGRRSSSATDD--SQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHN  456 (630)
Q Consensus       403 ------------d------------t~s~~gh~~~Vsa~~~--s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt  456 (630)
                                  |            ....+-|+..+..+-.  ....+.+++.|.+|.+|+.+..      .++++....
T Consensus       155 ~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lkGq------~L~~idtnq  228 (420)
T KOG2096|consen  155 NKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLKGQ------LLQSIDTNQ  228 (420)
T ss_pred             CEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecCCc------eeeeecccc
Confidence                        1            1124445555554433  3334899999999999999843      356666667


Q ss_pred             cCEEEEEEccCCCEEEEEeCCCcEEEEECc---CCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeeccc
Q 006825          457 GSIWSIKFSLDGRYLASAGEDCVIHVWQVV---ESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRG  533 (630)
Q Consensus       457 ~~V~sVaFSpDG~~LASgS~DgtIrVWDl~---tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~  533 (630)
                      ..-+..+.||+|++||+++.---|+||.+-   .|..........+.||...|..++|+++.+.+++.+.||++++|+..
T Consensus       229 ~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtd  308 (420)
T KOG2096|consen  229 SSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTD  308 (420)
T ss_pred             ccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeecc
Confidence            777888999999999999999999999873   22211111122358999999999999999999999999999777653


Q ss_pred             ccccccccccCccccccEEEeCCCCceEEe----ccCCCCEEEEEEcCCCeEEEEECCCcEEEEeCCCCcEEEEEe--cC
Q 006825          534 RSINRKSLSLDHMVVPETVFALSDKPICSF----QGHLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFS--HS  607 (630)
Q Consensus       534 ~~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL----~GHs~~V~sLafSPd~~LaSgS~DgtVrIWDl~tg~~l~t~~--H~  607 (630)
                      -...   ...            ..+.+++.    ..-...-..|+++|.+.++..+.-.+++++..++|+.+-+++  |.
T Consensus       309 VrY~---~~q------------Dpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs~l~~~~se~g~~~~~~e~~h~  373 (420)
T KOG2096|consen  309 VRYE---AGQ------------DPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFGSDLKVFASEDGKDYPELEDIHS  373 (420)
T ss_pred             ceEe---cCC------------CchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecCCceEEEEcccCccchhHHHhhc
Confidence            2100   000            11122221    122223347899999545555556789999999999998887  99


Q ss_pred             CceEEEE-cCCCcEEEEecce
Q 006825          608 DYDISLV-DRLMLRFAYGAFL  627 (630)
Q Consensus       608 ~~V~sVa-s~~~~~lAsgs~~  627 (630)
                      ..|.||+ ++++.++++-+.-
T Consensus       374 ~~Is~is~~~~g~~~atcGdr  394 (420)
T KOG2096|consen  374 TTISSISYSSDGKYIATCGDR  394 (420)
T ss_pred             CceeeEEecCCCcEEeeecce
Confidence            9999999 9999999887643

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.77  E-value=4.6e-17  Score=166.09  Aligned_cols=226  Identities=14%  Similarity=0.192  Sum_probs=179.5

Q ss_pred             eEEEEcCCCceEeeecceeeecCccceeEEEeec-----ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcC
Q 006825          316 KKVKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQ-----NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSV  390 (630)
Q Consensus       316 ~~l~dv~TG~~lt~eef~~l~GHs~~V~~Lafs~-----~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSp  390 (630)
                      ..+.|..+..++     ..+..|++.|++|.|.+     .|.+|+.|+.|. +|++..=+++..++ +|.+.|+.++..|
T Consensus        65 I~IYDm~k~~ql-----g~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~-iw~~~~W~~~~slK-~H~~~Vt~lsiHP  137 (362)
T KOG0294|consen   65 IHIYDMRKRKQL-----GILLSHAGSITALKFYPPLSKSHLLSGSDDGHII-IWRVGSWELLKSLK-AHKGQVTDLSIHP  137 (362)
T ss_pred             EEEEeccchhhh-----cceeccccceEEEEecCCcchhheeeecCCCcEE-EEEcCCeEEeeeec-ccccccceeEecC
Confidence            457777777777     88999999999999987     699999999999 99999999999999 9999999999999


Q ss_pred             CCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCE
Q 006825          391 TGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRY  470 (630)
Q Consensus       391 dG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~  470 (630)
                      .|++.                             ++.+.|..+|+|++-.+...  + +..|+ |..  .-|.|+|.|.+
T Consensus       138 S~KLA-----------------------------LsVg~D~~lr~WNLV~Gr~a--~-v~~L~-~~a--t~v~w~~~Gd~  182 (362)
T KOG0294|consen  138 SGKLA-----------------------------LSVGGDQVLRTWNLVRGRVA--F-VLNLK-NKA--TLVSWSPQGDH  182 (362)
T ss_pred             CCceE-----------------------------EEEcCCceeeeehhhcCccc--e-eeccC-Ccc--eeeEEcCCCCE
Confidence            98754                             45667889999998766432  1 11222 222  23999999999


Q ss_pred             EEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCcccccc
Q 006825          471 LASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPE  550 (630)
Q Consensus       471 LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~  550 (630)
                      ++.++.+ .|-||.+.+.....++.      ....+.++.|- ++..+++|..++.|                       
T Consensus       183 F~v~~~~-~i~i~q~d~A~v~~~i~------~~~r~l~~~~l-~~~~L~vG~d~~~i-----------------------  231 (362)
T KOG0294|consen  183 FVVSGRN-KIDIYQLDNASVFREIE------NPKRILCATFL-DGSELLVGGDNEWI-----------------------  231 (362)
T ss_pred             EEEEecc-EEEEEecccHhHhhhhh------ccccceeeeec-CCceEEEecCCceE-----------------------
Confidence            9888876 58999998766554431      11345566665 56678888899988                       


Q ss_pred             EEEeC-CCCceEEeccCCCCEEEEEEc--CC-CeEEEEECCCcEEEEeCCCC-----cEEEEEecCCceEEEE
Q 006825          551 TVFAL-SDKPICSFQGHLDDVLDLSWS--KS-QHLLSSSMDKTVRLWHLSSK-----TCLKIFSHSDYDISLV  614 (630)
Q Consensus       551 ~Vwdl-sgk~l~tL~GHs~~V~sLafS--Pd-~~LaSgS~DgtVrIWDl~tg-----~~l~t~~H~~~V~sVa  614 (630)
                      .+||. +..++..|.+|...|.++.+-  |. .+|+|+|.||.|+|||++..     +++..+.-+..++|+.
T Consensus       232 ~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~~k~~~~~l~e~n~~~RltCl~  304 (362)
T KOG0294|consen  232 SLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDMETKKRPTLLAELNTNVRLTCLR  304 (362)
T ss_pred             EEeccCCCccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEccccccCCcceeEEeecCCccceee
Confidence            78887 488999999999999999964  44 79999999999999999876     5666666677778877

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.74  E-value=9.1e-17  Score=166.95  Aligned_cols=264  Identities=16%  Similarity=0.150  Sum_probs=184.9

Q ss_pred             cccEEEEECCCCcEEEEeeecCCCceeEEEEcCC-----------CceEeeecceeeecCccceeEEEeec----ceEee
Q 006825          290 EQGCLIKNLDNGKEFVVNEIQEDGTWKKVKEVGT-----------GRQLTIEEFEMCVGHSPIVQELMRRQ----NVEEG  354 (630)
Q Consensus       290 ~~~~~I~~LddG~~~~v~e~~~dg~~~~l~dv~T-----------G~~lt~eef~~l~GHs~~V~~Lafs~----~laSg  354 (630)
                      ....|||.-.-|++.+...+.+.|. +.+|+.+.           ......+++.++.||..--..|.|+|    .|+||
T Consensus       152 g~~NRvr~~~~~~~~~~aswse~G~-V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsG  230 (440)
T KOG0302|consen  152 GGINRVRVSRLGNEVLCASWSENGR-VQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSG  230 (440)
T ss_pred             cccceeeecccCCcceeeeecccCc-EEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccccC
Confidence            3455666655556666655555554 33555431           11123456688999999999999999    58888


Q ss_pred             cCCCccEecccCCCCceeE---EecCCccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCc
Q 006825          355 NKDSFDLNNNGSSGGGMKS---KKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERV  431 (630)
Q Consensus       355 S~D~tvr~vWD~~tG~~~~---~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg  431 (630)
                      -.-+.++ +|-..+|....   -+. +|.++|-.++|||.-.                            .++++++-|+
T Consensus       231 Dc~~~I~-lw~~~~g~W~vd~~Pf~-gH~~SVEDLqWSptE~----------------------------~vfaScS~Dg  280 (440)
T KOG0302|consen  231 DCVKGIH-LWEPSTGSWKVDQRPFT-GHTKSVEDLQWSPTED----------------------------GVFASCSCDG  280 (440)
T ss_pred             ccccceE-eeeeccCceeecCcccc-ccccchhhhccCCccC----------------------------ceEEeeecCc
Confidence            8889999 99999987543   344 8999999999999532                            3478999999


Q ss_pred             EEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEE
Q 006825          432 RVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANG  511 (630)
Q Consensus       432 ~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svaf  511 (630)
                      +|||||++.+.-..  + ...++|.+-|+.|.|+..-.+||+|+.||+++|||+++.+.-.  ....+..|..+|++|.|
T Consensus       281 sIrIWDiRs~~~~~--~-~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~--pVA~fk~Hk~pItsieW  355 (440)
T KOG0302|consen  281 SIRIWDIRSGPKKA--A-VSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQ--PVATFKYHKAPITSIEW  355 (440)
T ss_pred             eEEEEEecCCCccc--e-eEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCC--cceeEEeccCCeeEEEe
Confidence            99999998763221  2 2349999999999999988899999999999999998654321  12336899999999999


Q ss_pred             CCC-CCEEEEeeCCCeeeeecccccccccccccCccccccEEEeCCCCceEEeccCCCCEEEEEEcCC--CeEEEEECCC
Q 006825          512 SPE-PTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS--QHLLSSSMDK  588 (630)
Q Consensus       512 Spd-g~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL~GHs~~V~sLafSPd--~~LaSgS~Dg  588 (630)
                      +|. ...|++++.|.+|.+|+...............-   .+-++.-+++..-+|. ..|..|.|++.  ++|+|.+.||
T Consensus       356 ~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~---~L~dlPpQLLFVHqGQ-ke~KevhWH~QiPG~lvsTa~dG  431 (440)
T KOG0302|consen  356 HPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAE---GLQDLPPQLLFVHQGQ-KEVKEVHWHRQIPGLLVSTAIDG  431 (440)
T ss_pred             ccccCceEEeccCCCcEEEEEeeccCChhhhcccccc---chhcCCceeEEEecch-hHhhhheeccCCCCeEEEecccc
Confidence            986 667788889999988876542221111000000   1112222333333332 46889999998  9999999998


Q ss_pred             cEEEEe
Q 006825          589 TVRLWH  594 (630)
Q Consensus       589 tVrIWD  594 (630)
                       +.||.
T Consensus       432 -fnVfk  436 (440)
T KOG0302|consen  432 -FNVFK  436 (440)
T ss_pred             -eeEEE
Confidence             45554

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.72  E-value=6.9e-16  Score=157.13  Aligned_cols=268  Identities=15%  Similarity=0.176  Sum_probs=197.9

Q ss_pred             ecCccceeEEEeec---ceEeecCCCccEecccCCC--Cc--eeEEecCCccCCEEEEEEcC--CCCeEEeecCCC----
Q 006825          336 VGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSG--GG--MKSKKKGSWFKSIRTVASSV--TGHKERRSSDER----  402 (630)
Q Consensus       336 ~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~t--G~--~~~~lk~gH~~~V~sVAfSp--dG~~lasgS~D~----  402 (630)
                      .||.+.|.++.|-+   .+|++|.|.+++ |||...  |.  +-...+ .|.+.|..|+|.+  -|+.+|+.+.|+    
T Consensus        10 s~h~DlihdVs~D~~GRRmAtCSsDq~vk-I~d~~~~s~~W~~Ts~Wr-ah~~Si~rV~WAhPEfGqvvA~cS~Drtv~i   87 (361)
T KOG2445|consen   10 SGHKDLIHDVSFDFYGRRMATCSSDQTVK-IWDSTSDSGTWSCTSSWR-AHDGSIWRVVWAHPEFGQVVATCSYDRTVSI   87 (361)
T ss_pred             cCCcceeeeeeecccCceeeeccCCCcEE-EEeccCCCCceEEeeeEE-ecCCcEEEEEecCccccceEEEEecCCceee
Confidence            58999999999988   799999999999 999643  33  445666 8999999999886  689999999998    


Q ss_pred             --C-Cc-------------cccCCcceEEEeecCCCe----EEEecCCcEEEEEeCCC-CcccceeeeeEec-------c
Q 006825          403 --D-TS-------------SEKGGRRSSSATDDSQDV----SFHGQERVRVRQYGKSC-KDLTALYKCQEIQ-------A  454 (630)
Q Consensus       403 --d-t~-------------s~~gh~~~Vsa~~~s~d~----l~Sgs~Dg~VriWd~~~-~el~~~~~v~tL~-------g  454 (630)
                        + ..             ++.+.+..|..+.|.+..    +++.+.||.+|||+.-. .++....+.++++       .
T Consensus        88 WEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~  167 (361)
T KOG2445|consen   88 WEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGK  167 (361)
T ss_pred             eeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCccc
Confidence              1 11             155566778888888754    89999999999998643 3444444555555       6


Q ss_pred             cCcCEEEEEEcc---CCCEEEEEeCC-----CcEEEEECcCCceeeeeecccccCcccceEEEEECCC----CCEEEEee
Q 006825          455 HNGSIWSIKFSL---DGRYLASAGED-----CVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPE----PTSLSPKH  522 (630)
Q Consensus       455 Ht~~V~sVaFSp---DG~~LASgS~D-----gtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpd----g~~lasgs  522 (630)
                      |..+..||.|+|   ...+||.|+.+     +.++||......+.... ...+.+|..+|+.++|.|.    -.+||+++
T Consensus       168 ~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~k-va~L~d~~dpI~di~wAPn~Gr~y~~lAvA~  246 (361)
T KOG2445|consen  168 NKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLK-VAELPDHTDPIRDISWAPNIGRSYHLLAVAT  246 (361)
T ss_pred             ccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeee-ehhcCCCCCcceeeeeccccCCceeeEEEee
Confidence            888999999998   35688888876     57999988665432221 2334799999999999997    35788999


Q ss_pred             CCCeeeeecccccccccccccCccccccEEEeCCCCceEEeccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCC---C
Q 006825          523 LDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSS---K  598 (630)
Q Consensus       523 ~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~t---g  598 (630)
                      .|| |++|.........  ..+....+..+.++.-+.+..|.+|..+|..+.|+-. ..|+|.+.||+||+|...-   .
T Consensus       247 kDg-v~I~~v~~~~s~i--~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkany~n~~  323 (361)
T KOG2445|consen  247 KDG-VRIFKVKVARSAI--EEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKANYNNLW  323 (361)
T ss_pred             cCc-EEEEEEeeccchh--hhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhhhhhhh
Confidence            999 8777765311110  1111112223344444677789999999999999887 8889999999999998753   4


Q ss_pred             cEEEEEecCCc
Q 006825          599 TCLKIFSHSDY  609 (630)
Q Consensus       599 ~~l~t~~H~~~  609 (630)
                      +|+..++-...
T Consensus       324 kC~sv~~~e~~  334 (361)
T KOG2445|consen  324 KCTSVLKAEGS  334 (361)
T ss_pred             eeeeEEeccCC
Confidence            67777763333

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.72  E-value=4.8e-15  Score=151.19  Aligned_cols=235  Identities=12%  Similarity=0.038  Sum_probs=164.7

Q ss_pred             eEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeE-EeecCCC-----C--Ccc----ccCCcceEEEee
Q 006825          351 VEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKE-RRSSDER-----D--TSS----EKGGRRSSSATD  418 (630)
Q Consensus       351 laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~l-asgS~D~-----d--t~s----~~gh~~~Vsa~~  418 (630)
                      +++++.|++++ +||..+++.+.++. +|. .+.+++|+|+|+++ +++..+.     +  +..    ...+.. +..+.
T Consensus         4 ~~s~~~d~~v~-~~d~~t~~~~~~~~-~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~   79 (300)
T TIGR03866         4 YVSNEKDNTIS-VIDTATLEVTRTFP-VGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD-PELFA   79 (300)
T ss_pred             EEEecCCCEEE-EEECCCCceEEEEE-CCC-CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC-ccEEE
Confidence            67899999999 99999999988887 554 46789999999976 5555554     1  111    222222 34455


Q ss_pred             cCCCe--E-EEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCC-cEEEEECcCCceeeee
Q 006825          419 DSQDV--S-FHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDC-VIHVWQVVESERKGEL  494 (630)
Q Consensus       419 ~s~d~--l-~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~Dg-tIrVWDl~tg~~~~~l  494 (630)
                      +++++  + +++..++.|++||+.+.+     .+..+.. ...+.+++|+|+|++|++++.++ .+++||..++.....+
T Consensus        80 ~~~~g~~l~~~~~~~~~l~~~d~~~~~-----~~~~~~~-~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~  153 (300)
T TIGR03866        80 LHPNGKILYIANEDDNLVTVIDIETRK-----VLAEIPV-GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNV  153 (300)
T ss_pred             ECCCCCEEEEEcCCCCeEEEEECCCCe-----EEeEeeC-CCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEE
Confidence            66665  4 455678999999997653     2344442 23468899999999999998875 5678899887665543


Q ss_pred             ecccccCcccceEEEEECCCCCEEEEe-eCCCeeeeecccccccccccccCccccccEEEeC-CCCceEEeccCC-----
Q 006825          495 LEKQEDGHLNMLLLANGSPEPTSLSPK-HLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHL-----  567 (630)
Q Consensus       495 ~~~~~~gh~~~V~svafSpdg~~lasg-s~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL~GHs-----  567 (630)
                      .    .+  .....++|+|++++++.+ ..++.|                       .+|++ +++.+..+..+.     
T Consensus       154 ~----~~--~~~~~~~~s~dg~~l~~~~~~~~~v-----------------------~i~d~~~~~~~~~~~~~~~~~~~  204 (300)
T TIGR03866       154 L----VD--QRPRFAEFTADGKELWVSSEIGGTV-----------------------SVIDVATRKVIKKITFEIPGVHP  204 (300)
T ss_pred             E----cC--CCccEEEECCCCCEEEEEcCCCCEE-----------------------EEEEcCcceeeeeeeeccccccc
Confidence            1    11  234678999999987544 458888                       66666 445555443221     


Q ss_pred             C--CEEEEEEcCC-CeE-EEEECCCcEEEEeCCCCcEEEEEecCCceEEEE-cCCCcEEEEe
Q 006825          568 D--DVLDLSWSKS-QHL-LSSSMDKTVRLWHLSSKTCLKIFSHSDYDISLV-DRLMLRFAYG  624 (630)
Q Consensus       568 ~--~V~sLafSPd-~~L-aSgS~DgtVrIWDl~tg~~l~t~~H~~~V~sVa-s~~~~~lAsg  624 (630)
                      .  ....++|+|+ +++ ++.+.+++|.+||+.+++.+..+.+...+++++ +|++..++++
T Consensus       205 ~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~  266 (300)
T TIGR03866       205 EAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLLVGQRVWQLAFTPDEKYLLTT  266 (300)
T ss_pred             ccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEeCCCcceEEECCCCCEEEEE
Confidence            1  2356889999 664 445567789999999999888777667889999 8888877665

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.71  E-value=3.4e-15  Score=168.95  Aligned_cols=256  Identities=16%  Similarity=0.216  Sum_probs=183.2

Q ss_pred             cccEEEEECCCCcEEEEeeecCCCceeEEEEcCCCceEeeecceeeecCccceeEEEeec-ceEeecCCCccEecccCCC
Q 006825          290 EQGCLIKNLDNGKEFVVNEIQEDGTWKKVKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQ-NVEEGNKDSFDLNNNGSSG  368 (630)
Q Consensus       290 ~~~~~I~~LddG~~~~v~e~~~dg~~~~l~dv~TG~~lt~eef~~l~GHs~~V~~Lafs~-~laSgS~D~tvr~vWD~~t  368 (630)
                      ++.++|---++|+ |++. -+.||.. +.|+...-  .  |+.+++--|...|.+++-.. .+++|+.+.+|. ++...+
T Consensus        14 ~G~t~i~~d~~ge-fi~t-cgsdg~i-r~~~~~sd--~--e~P~ti~~~g~~v~~ia~~s~~f~~~s~~~tv~-~y~fps   85 (933)
T KOG1274|consen   14 GGLTLICYDPDGE-FICT-CGSDGDI-RKWKTNSD--E--EEPETIDISGELVSSIACYSNHFLTGSEQNTVL-RYKFPS   85 (933)
T ss_pred             CceEEEEEcCCCC-EEEE-ecCCCce-EEeecCCc--c--cCCchhhccCceeEEEeecccceEEeeccceEE-EeeCCC
Confidence            3455555556666 4432 2345553 34443322  1  33344444888888888765 899999999999 998888


Q ss_pred             CceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceee
Q 006825          369 GGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYK  448 (630)
Q Consensus       369 G~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~  448 (630)
                      ++.-..+. ..+-+++.++|+-+|+++|.||+|                             -.|++-+.....     .
T Consensus        86 ~~~~~iL~-Rftlp~r~~~v~g~g~~iaagsdD-----------------------------~~vK~~~~~D~s-----~  130 (933)
T KOG1274|consen   86 GEEDTILA-RFTLPIRDLAVSGSGKMIAAGSDD-----------------------------TAVKLLNLDDSS-----Q  130 (933)
T ss_pred             CCccceee-eeeccceEEEEecCCcEEEeecCc-----------------------------eeEEEEeccccc-----h
Confidence            87766665 677889999999999988765544                             467777765443     3


Q ss_pred             eeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeeccc--ccCc-ccceEEEEECCCCCEEEEeeCCC
Q 006825          449 CQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQ--EDGH-LNMLLLANGSPEPTSLSPKHLDN  525 (630)
Q Consensus       449 v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~--~~gh-~~~V~svafSpdg~~lasgs~Dg  525 (630)
                      ...+.+|+++|.+|.|+|.+++||+.+-||+|+|||+.++....++....  ..-. ...+..++|+|++..++....|+
T Consensus       131 ~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~  210 (933)
T KOG1274|consen  131 EKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDN  210 (933)
T ss_pred             heeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCC
Confidence            46789999999999999999999999999999999999998877754111  1111 34567899999977777777888


Q ss_pred             eeeeecccccccccccccCccccccEEEeC-CCCceEEecc--CCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCCCcEE
Q 006825          526 HLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQG--HLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCL  601 (630)
Q Consensus       526 ~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL~G--Hs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg~~l  601 (630)
                      .|                       +++.. .......|..  |...+.+++|+|+ +|||++..||.|-|||+++... 
T Consensus       211 ~V-----------------------kvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~-  266 (933)
T KOG1274|consen  211 TV-----------------------KVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHER-  266 (933)
T ss_pred             eE-----------------------EEEccCCceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEecccchh-
Confidence            88                       44444 3344444432  4445999999999 9999999999999999997322 


Q ss_pred             EEEecCCceEEEE
Q 006825          602 KIFSHSDYDISLV  614 (630)
Q Consensus       602 ~t~~H~~~V~sVa  614 (630)
                        -.-...|.|++
T Consensus       267 --~~~~~~Vc~~a  277 (933)
T KOG1274|consen  267 --HEFKRAVCCEA  277 (933)
T ss_pred             --ccccceeEEEe
Confidence              11345566666

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.71  E-value=6.8e-16  Score=170.09  Aligned_cols=275  Identities=16%  Similarity=0.088  Sum_probs=199.9

Q ss_pred             ceeeecCccceeEEEeec------ceEeecCCCccEecccCCCCc------------------------eeE------Ee
Q 006825          332 FEMCVGHSPIVQELMRRQ------NVEEGNKDSFDLNNNGSSGGG------------------------MKS------KK  375 (630)
Q Consensus       332 f~~l~GHs~~V~~Lafs~------~laSgS~D~tvr~vWD~~tG~------------------------~~~------~l  375 (630)
                      ...+.||++.|..|+|..      +|||+|.|..|| ||.+.-+.                        .+.      .+
T Consensus       184 v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIR-iW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eal  262 (764)
T KOG1063|consen  184 VAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIR-IWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEAL  262 (764)
T ss_pred             EEEeeccchhhhhhhhhccCCCcEEEEecCCceEEE-EEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhh
Confidence            357899999999999976      799999999999 99754322                        111      22


Q ss_pred             cCCccCCEEEEEEcCCCCeEEeecCCC-------CCc--c--------ccCC-cceEEEeecCCCe--EEEecCCcEEEE
Q 006825          376 KGSWFKSIRTVASSVTGHKERRSSDER-------DTS--S--------EKGG-RRSSSATDDSQDV--SFHGQERVRVRQ  435 (630)
Q Consensus       376 k~gH~~~V~sVAfSpdG~~lasgS~D~-------dt~--s--------~~gh-~~~Vsa~~~s~d~--l~Sgs~Dg~Vri  435 (630)
                      ..||.+.|.+|.|+|.+..|.++|.|+       +..  .        +.+| ...-...-++++.  +++-+..|-.++
T Consensus       263 l~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hl  342 (764)
T KOG1063|consen  263 LMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHL  342 (764)
T ss_pred             hcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEE
Confidence            249999999999999998888888887       111  1        2222 3344555566665  778888899999


Q ss_pred             EeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCce-eee---------------------
Q 006825          436 YGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESER-KGE---------------------  493 (630)
Q Consensus       436 Wd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~-~~~---------------------  493 (630)
                      |..+  +.........+.||.+.|..|+|.|.|.+|.|.|.|.|-||+---..+. -.+                     
T Consensus       343 Wkt~--d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~  420 (764)
T KOG1063|consen  343 WKTK--DKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDL  420 (764)
T ss_pred             Eecc--CccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCc
Confidence            9833  3233334456789999999999999999999999999999864220000 000                     


Q ss_pred             -------------------------------------------------------------------------------e
Q 006825          494 -------------------------------------------------------------------------------L  494 (630)
Q Consensus       494 -------------------------------------------------------------------------------l  494 (630)
                                                                                                     +
T Consensus       421 ~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L  500 (764)
T KOG1063|consen  421 QFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCEL  500 (764)
T ss_pred             eeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhc
Confidence                                                                                           0


Q ss_pred             e----------------cccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeC-CC
Q 006825          495 L----------------EKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SD  557 (630)
Q Consensus       495 ~----------------~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sg  557 (630)
                      .                ...+.||...|++++.+|+++++|++.......               ...|   .+|.. +-
T Consensus       501 ~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~e---------------hAvI---~lw~t~~W  562 (764)
T KOG1063|consen  501 TEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKE---------------HAVI---RLWNTANW  562 (764)
T ss_pred             cCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCcc---------------ceEE---EEEeccch
Confidence            0                001246667778888888888888876544321               0111   77887 45


Q ss_pred             CceEEeccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCCCcE-EE---EEe-cCCceEEEE-cCCCcEEEEecce
Q 006825          558 KPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTC-LK---IFS-HSDYDISLV-DRLMLRFAYGAFL  627 (630)
Q Consensus       558 k~l~tL~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg~~-l~---t~~-H~~~V~sVa-s~~~~~lAsgs~~  627 (630)
                      ..+..|++|.-.|+.|+|||| .+|++.|.|.++.||....... -.   ..+ |.--|++.. .|+..++++++.+
T Consensus       563 ~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRD  639 (764)
T KOG1063|consen  563 LQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRD  639 (764)
T ss_pred             hhhheecccceEEEEEEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCC
Confidence            667789999999999999999 9999999999999998854321 11   234 999999999 9999999999866

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.71  E-value=1.2e-16  Score=168.83  Aligned_cols=244  Identities=13%  Similarity=0.113  Sum_probs=175.9

Q ss_pred             CcccccccEEEEECCCCcEEE-EeeecCCCceeEEEEcC--CCceEeeecceeeecCccceeEEEeec----ceEeecCC
Q 006825          285 TAGVAEQGCLIKNLDNGKEFV-VNEIQEDGTWKKVKEVG--TGRQLTIEEFEMCVGHSPIVQELMRRQ----NVEEGNKD  357 (630)
Q Consensus       285 ~~~~~~~~~~I~~LddG~~~~-v~e~~~dg~~~~l~dv~--TG~~lt~eef~~l~GHs~~V~~Lafs~----~laSgS~D  357 (630)
                      |-+.++....|||||--...+ ....|.-     +....  -|+.-     ..-.||+.+|..|++.-    .|||||.|
T Consensus       196 AiGtmdp~IeIWDLDI~d~v~P~~~LGs~-----~sk~~~k~~k~~-----~~~~gHTdavl~Ls~n~~~~nVLaSgsaD  265 (463)
T KOG0270|consen  196 AIGTMDPEIEIWDLDIVDAVLPCVTLGSK-----ASKKKKKKGKRS-----NSASGHTDAVLALSWNRNFRNVLASGSAD  265 (463)
T ss_pred             EEeccCceeEEeccccccccccceeechh-----hhhhhhhhcccc-----cccccchHHHHHHHhccccceeEEecCCC
Confidence            666888999999996432211 1111110     00000  01100     12458999999988654    89999999


Q ss_pred             CccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCcEEEEEe
Q 006825          358 SFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYG  437 (630)
Q Consensus       358 ~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd  437 (630)
                      +||+ +||+.+|++..++. .|.+.|.+++|.|.                            .+..+++|+.|++|++.|
T Consensus       266 ~TV~-lWD~~~g~p~~s~~-~~~k~Vq~l~wh~~----------------------------~p~~LLsGs~D~~V~l~D  315 (463)
T KOG0270|consen  266 KTVK-LWDVDTGKPKSSIT-HHGKKVQTLEWHPY----------------------------EPSVLLSGSYDGTVALKD  315 (463)
T ss_pred             ceEE-EEEcCCCCcceehh-hcCCceeEEEecCC----------------------------CceEEEeccccceEEeee
Confidence            9999 99999999999999 89999999999995                            345578999999999999


Q ss_pred             CCCCcccceeeeeEecccCcCEEEEEEccC-CCEEEEEeCCCcEEEEECcCC-ceeeeeecccccCcccceEEEEECCC-
Q 006825          438 KSCKDLTALYKCQEIQAHNGSIWSIKFSLD-GRYLASAGEDCVIHVWQVVES-ERKGELLEKQEDGHLNMLLLANGSPE-  514 (630)
Q Consensus       438 ~~~~el~~~~~v~tL~gHt~~V~sVaFSpD-G~~LASgS~DgtIrVWDl~tg-~~~~~l~~~~~~gh~~~V~svafSpd-  514 (630)
                      .+......    . .-.-.+.|-.++|.|. ...++.+..||+|+-+|++.. +++.++     ..|...|.++++++. 
T Consensus       316 ~R~~~~s~----~-~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~-----~AHd~~ISgl~~n~~~  385 (463)
T KOG0270|consen  316 CRDPSNSG----K-EWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTL-----KAHDDEISGLSVNIQT  385 (463)
T ss_pred             ccCccccC----c-eEEeccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEE-----EeccCCcceEEecCCC
Confidence            87422111    1 1124577999999994 456777889999999999876 666664     899999999999887 


Q ss_pred             CCEEEEeeCCCeeeeecccccccccccccCccccccEEEeCCCCceEEeccCCC---CEEEEEEcCC--CeEEEEECCCc
Q 006825          515 PTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLD---DVLDLSWSKS--QHLLSSSMDKT  589 (630)
Q Consensus       515 g~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL~GHs~---~V~sLafSPd--~~LaSgS~Dgt  589 (630)
                      ..++++++.|+.+                       ++|++.+..-.....|.-   ...|.++.|+  .+|+.|+.-+.
T Consensus       386 p~~l~t~s~d~~V-----------------------klw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~  442 (463)
T KOG0270|consen  386 PGLLSTASTDKVV-----------------------KLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAV  442 (463)
T ss_pred             CcceeeccccceE-----------------------EEEeecCCCCcccccccccccceeecccCCCcceEEEecCccce
Confidence            5678889999999                       666663322222223332   2467777787  78888888889


Q ss_pred             EEEEeCCCCcEE
Q 006825          590 VRLWHLSSKTCL  601 (630)
Q Consensus       590 VrIWDl~tg~~l  601 (630)
                      ++|||+.+...+
T Consensus       443 ~~vwd~~~~~~V  454 (463)
T KOG0270|consen  443 LRVWDIFTNSPV  454 (463)
T ss_pred             EEEeecccChhH
Confidence            999999887544

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.70  E-value=1e-15  Score=156.73  Aligned_cols=215  Identities=15%  Similarity=0.153  Sum_probs=169.2

Q ss_pred             ceEeecCCCccEecccCCCCceeEEecC-CccCCEE---EEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEE
Q 006825          350 NVEEGNKDSFDLNNNGSSGGGMKSKKKG-SWFKSIR---TVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSF  425 (630)
Q Consensus       350 ~laSgS~D~tvr~vWD~~tG~~~~~lk~-gH~~~V~---sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~  425 (630)
                      +.|+.+.|.-|+ +||.-||+.+...+. .|...+.   +++|+|||.+|..                            
T Consensus       125 l~a~ssr~~PIh-~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfa----------------------------  175 (406)
T KOG2919|consen  125 LFAVSSRDQPIH-LWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFA----------------------------  175 (406)
T ss_pred             eeeeccccCcee-eeeccccccccchhhhhhHHhhhhheeEEecCCCCeEee----------------------------
Confidence            678889999999 999999998887663 5777664   6999999987743                            


Q ss_pred             EecCCcEEEEEeCC-CCcccceeeeeEe-----cccCcCEEEEEEcc-CCCEEEEEeCCCcEEEEECcCCceeeeeeccc
Q 006825          426 HGQERVRVRQYGKS-CKDLTALYKCQEI-----QAHNGSIWSIKFSL-DGRYLASAGEDCVIHVWQVVESERKGELLEKQ  498 (630)
Q Consensus       426 Sgs~Dg~VriWd~~-~~el~~~~~v~tL-----~gHt~~V~sVaFSp-DG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~  498 (630)
                        +....||++|+. .+..-   .+.+.     .+..+.|.|++|+| +.+.+|.|+.-.++-|+.-..+..+..+    
T Consensus       176 --GykrcirvFdt~RpGr~c---~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~ll----  246 (406)
T KOG2919|consen  176 --GYKRCIRVFDTSRPGRDC---PVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLL----  246 (406)
T ss_pred             --cccceEEEeeccCCCCCC---cchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeee----
Confidence              234568999883 32211   11222     24478899999999 6779999999999999988777777664    


Q ss_pred             ccCcccceEEEEECCCCCEEEEeeC-CCeeeeecccccccccccccCccccccEEEeC--CCCceEEeccCCCCE-EEEE
Q 006825          499 EDGHLNMLLLANGSPEPTSLSPKHL-DNHLEKKRRGRSINRKSLSLDHMVVPETVFAL--SDKPICSFQGHLDDV-LDLS  574 (630)
Q Consensus       499 ~~gh~~~V~svafSpdg~~lasgs~-Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl--sgk~l~tL~GHs~~V-~sLa  574 (630)
                       .+|.+.|+.+.|+++|..+.+|+. +..|                       ..|++  .+.++..|..|.... -.|.
T Consensus       247 -ggh~gGvThL~~~edGn~lfsGaRk~dkI-----------------------l~WDiR~~~~pv~~L~rhv~~TNQRI~  302 (406)
T KOG2919|consen  247 -GGHGGGVTHLQWCEDGNKLFSGARKDDKI-----------------------LCWDIRYSRDPVYALERHVGDTNQRIL  302 (406)
T ss_pred             -cccCCCeeeEEeccCcCeecccccCCCeE-----------------------EEEeehhccchhhhhhhhccCccceEE
Confidence             699999999999999999998864 3445                       67887  678888999998733 3455


Q ss_pred             Ec--CC-CeEEEEECCCcEEEEeCCC-CcEEEEEe-cCCceEEEE-cCCCcEEEEecc
Q 006825          575 WS--KS-QHLLSSSMDKTVRLWHLSS-KTCLKIFS-HSDYDISLV-DRLMLRFAYGAF  626 (630)
Q Consensus       575 fS--Pd-~~LaSgS~DgtVrIWDl~t-g~~l~t~~-H~~~V~sVa-s~~~~~lAsgs~  626 (630)
                      |.  |+ ++|++|+.||.|++||++. |..+..+. |.+.|+.|+ +|..-++|+.+.
T Consensus       303 FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatssG  360 (406)
T KOG2919|consen  303 FDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSSG  360 (406)
T ss_pred             EecCCCCceeeccCCCccEEEEecCCCCCcccccccccccccceecCcccceeeeccC
Confidence            54  56 8999999999999999998 78777777 999999999 888888887754

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.69  E-value=1.1e-14  Score=160.58  Aligned_cols=266  Identities=14%  Similarity=0.112  Sum_probs=203.5

Q ss_pred             ceeecCCCCcccCCCccccccCCCCCcccccccEEEEECCCCcEEEEeeecCCCceeEEEEcCCCceEeeecceeeecCc
Q 006825          260 SMSINGNGNYIGNSGEVVEDFDGNGTAGVAEQGCLIKNLDNGKEFVVNEIQEDGTWKKVKEVGTGRQLTIEEFEMCVGHS  339 (630)
Q Consensus       260 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~LddG~~~~v~e~~~dg~~~~l~dv~TG~~lt~eef~~l~GHs  339 (630)
                      +|++|.++++|              |....++...|||+..+=-..                           ..+.||.
T Consensus        30 slA~s~kS~~l--------------AvsRt~g~IEiwN~~~~w~~~---------------------------~vi~g~~   68 (691)
T KOG2048|consen   30 SLAYSHKSNQL--------------AVSRTDGNIEIWNLSNNWFLE---------------------------PVIHGPE   68 (691)
T ss_pred             EEEEeccCCce--------------eeeccCCcEEEEccCCCceee---------------------------EEEecCC
Confidence            48999999998              555788899999996641100                           1233333


Q ss_pred             -cceeEEEeec--ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEE
Q 006825          340 -PIVQELMRRQ--NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSA  416 (630)
Q Consensus       340 -~~V~~Lafs~--~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa  416 (630)
                       ..|..|+|.+  .|.|.+.+++|. -||+.+++.+.... .-.+.|.++|..|.+..+                     
T Consensus        69 drsIE~L~W~e~~RLFS~g~sg~i~-EwDl~~lk~~~~~d-~~gg~IWsiai~p~~~~l---------------------  125 (691)
T KOG2048|consen   69 DRSIESLAWAEGGRLFSSGLSGSIT-EWDLHTLKQKYNID-SNGGAIWSIAINPENTIL---------------------  125 (691)
T ss_pred             CCceeeEEEccCCeEEeecCCceEE-EEecccCceeEEec-CCCcceeEEEeCCccceE---------------------
Confidence             4578899986  799999999999 99999999999988 788899999999876544                     


Q ss_pred             eecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeee-
Q 006825          417 TDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELL-  495 (630)
Q Consensus       417 ~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~-  495 (630)
                              +-|+.||.+..++...+.+.   --..|.-.++.|.+|+|+|++..||+|+.||.|++||+..+..+.... 
T Consensus       126 --------~IgcddGvl~~~s~~p~~I~---~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~  194 (691)
T KOG2048|consen  126 --------AIGCDDGVLYDFSIGPDKIT---YKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITM  194 (691)
T ss_pred             --------EeecCCceEEEEecCCceEE---EEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeee
Confidence                    45566776666666555432   234566678999999999999999999999999999999988766211 


Q ss_pred             --cccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeC-CCCceEEeccCCCCEEE
Q 006825          496 --EKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLD  572 (630)
Q Consensus       496 --~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL~GHs~~V~s  572 (630)
                        .....+....|+++.|-.++ .|++|-..|+|                       ++|+. .+.+++.+..|...|.+
T Consensus       195 ~~d~l~k~~~~iVWSv~~Lrd~-tI~sgDS~G~V-----------------------~FWd~~~gTLiqS~~~h~adVl~  250 (691)
T KOG2048|consen  195 QLDRLSKREPTIVWSVLFLRDS-TIASGDSAGTV-----------------------TFWDSIFGTLIQSHSCHDADVLA  250 (691)
T ss_pred             cccccccCCceEEEEEEEeecC-cEEEecCCceE-----------------------EEEcccCcchhhhhhhhhcceeE
Confidence              11112344567888888655 56788888999                       88887 78999999999999999


Q ss_pred             EEEcCC-CeEEEEECCCcEEEEeCCCCcE--EEEEe---cCCceEEEE-cCCCcEEEEecc
Q 006825          573 LSWSKS-QHLLSSSMDKTVRLWHLSSKTC--LKIFS---HSDYDISLV-DRLMLRFAYGAF  626 (630)
Q Consensus       573 LafSPd-~~LaSgS~DgtVrIWDl~tg~~--l~t~~---H~~~V~sVa-s~~~~~lAsgs~  626 (630)
                      |+..++ .+|.+++.|+.|..+...+++-  +..-.   |...|.+++ .++  .+.+|+.
T Consensus       251 Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~--~l~sgG~  309 (691)
T KOG2048|consen  251 LAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN--ALISGGR  309 (691)
T ss_pred             EEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc--eEEecce
Confidence            999999 9999999999999888877643  22222   999999999 443  4445543

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.68  E-value=4.2e-15  Score=151.46  Aligned_cols=220  Identities=15%  Similarity=0.215  Sum_probs=155.3

Q ss_pred             CCccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccC
Q 006825          377 GSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHN  456 (630)
Q Consensus       377 ~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt  456 (630)
                      .+|..-|.+|.|.+-|.++                             ++++.|.+|+|||.. .+-....+....+.|.
T Consensus        10 s~h~DlihdVs~D~~GRRm-----------------------------AtCSsDq~vkI~d~~-~~s~~W~~Ts~Wrah~   59 (361)
T KOG2445|consen   10 SGHKDLIHDVSFDFYGRRM-----------------------------ATCSSDQTVKIWDST-SDSGTWSCTSSWRAHD   59 (361)
T ss_pred             cCCcceeeeeeecccCcee-----------------------------eeccCCCcEEEEecc-CCCCceEEeeeEEecC
Confidence            4666666666666666655                             566777899999963 3334556778899999


Q ss_pred             cCEEEEEEcc--CCCEEEEEeCCCcEEEEECcCC--ce--eeeeecccccCcccceEEEEECCC--CCEEEEeeCCCeee
Q 006825          457 GSIWSIKFSL--DGRYLASAGEDCVIHVWQVVES--ER--KGELLEKQEDGHLNMLLLANGSPE--PTSLSPKHLDNHLE  528 (630)
Q Consensus       457 ~~V~sVaFSp--DG~~LASgS~DgtIrVWDl~tg--~~--~~~l~~~~~~gh~~~V~svafSpd--g~~lasgs~Dg~I~  528 (630)
                      +.|+.|.|.+  -|+.+|+++.|++|+||.-...  +.  .+-.....+......|+.|.|.|.  |..+++++.||+++
T Consensus        60 ~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lR  139 (361)
T KOG2445|consen   60 GSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILR  139 (361)
T ss_pred             CcEEEEEecCccccceEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEE
Confidence            9999999976  6999999999999999986211  11  011111223566688999999997  88999999999999


Q ss_pred             eecccccccccccccCccc----------------------------------------cccEEEeC--CC---CceEEe
Q 006825          529 KKRRGRSINRKSLSLDHMV----------------------------------------VPETVFAL--SD---KPICSF  563 (630)
Q Consensus       529 i~~~~~~~~~~s~s~d~~i----------------------------------------~~~~Vwdl--sg---k~l~tL  563 (630)
                      ++..........+.+.+.+                                        ....||..  .+   ..+.+|
T Consensus       140 IYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L  219 (361)
T KOG2445|consen  140 IYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAEL  219 (361)
T ss_pred             EEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhc
Confidence            8875543322111111100                                        01145554  22   245568


Q ss_pred             ccCCCCEEEEEEcCC-----CeEEEEECCCcEEEEeCCCC--------------------cEEEEEe-cCCceEEEE-cC
Q 006825          564 QGHLDDVLDLSWSKS-----QHLLSSSMDKTVRLWHLSSK--------------------TCLKIFS-HSDYDISLV-DR  616 (630)
Q Consensus       564 ~GHs~~V~sLafSPd-----~~LaSgS~DgtVrIWDl~tg--------------------~~l~t~~-H~~~V~sVa-s~  616 (630)
                      .+|+.+|++|+|.|+     .+||+++.|| |+||++...                    +.+..|. |+..|+.+. +-
T Consensus       220 ~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNm  298 (361)
T KOG2445|consen  220 PDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNM  298 (361)
T ss_pred             CCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEee
Confidence            899999999999997     5799999999 999998731                    1333444 999999999 77


Q ss_pred             CCcEEEEecce
Q 006825          617 LMLRFAYGAFL  627 (630)
Q Consensus       617 ~~~~lAsgs~~  627 (630)
                      .+..|++.+.+
T Consensus       299 tGtiLsStGdD  309 (361)
T KOG2445|consen  299 TGTILSSTGDD  309 (361)
T ss_pred             eeeEEeecCCC
Confidence            78888777654

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.68  E-value=7.8e-16  Score=166.73  Aligned_cols=215  Identities=18%  Similarity=0.208  Sum_probs=159.7

Q ss_pred             eeecCccceeEEEeec---ceEeecCCCccEecccCCC--------CceeEEecCCccCCEEEEEEcCCCCeEEeecCCC
Q 006825          334 MCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSG--------GGMKSKKKGSWFKSIRTVASSVTGHKERRSSDER  402 (630)
Q Consensus       334 ~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~t--------G~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~  402 (630)
                      ++.-|...|+.++|.|   .|++++.|++++ +|.+..        -+.+.+++ +|.++|.||+.++.|+.+       
T Consensus       289 tl~s~~d~ir~l~~~~sep~lit~sed~~lk-~WnLqk~~~s~~~~~epi~tfr-aH~gPVl~v~v~~n~~~~-------  359 (577)
T KOG0642|consen  289 TLRSHDDCIRALAFHPSEPVLITASEDGTLK-LWNLQKAKKSAEKDVEPILTFR-AHEGPVLCVVVPSNGEHC-------  359 (577)
T ss_pred             eeecchhhhhhhhcCCCCCeEEEeccccchh-hhhhcccCCccccceeeeEEEe-cccCceEEEEecCCceEE-------
Confidence            7888999999999987   899999999999 999821        24677888 899999999998877544       


Q ss_pred             CCccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCc-----ccceeeeeEecccCcCEEEEEEccCCCEEEEEeCC
Q 006825          403 DTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKD-----LTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGED  477 (630)
Q Consensus       403 dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~e-----l~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~D  477 (630)
                                            ++|+-|++|+.|++....     ........+|.||++.||.+++|+....|++++.|
T Consensus       360 ----------------------ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~D  417 (577)
T KOG0642|consen  360 ----------------------YSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSD  417 (577)
T ss_pred             ----------------------EeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCC
Confidence                                  788899999999654210     01112346789999999999999999999999999


Q ss_pred             CcEEEEECcCCceeeeeecccccCcccc-------------------------------------------------eEE
Q 006825          478 CVIHVWQVVESERKGELLEKQEDGHLNM-------------------------------------------------LLL  508 (630)
Q Consensus       478 gtIrVWDl~tg~~~~~l~~~~~~gh~~~-------------------------------------------------V~s  508 (630)
                      ||+|+|+...... .++...  ..|..+                                                 +..
T Consensus       418 gTvr~w~~~~~~~-~~f~~~--~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~  494 (577)
T KOG0642|consen  418 GTVRLWEPTEESP-CTFGEP--KEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINK  494 (577)
T ss_pred             ceEEeeccCCcCc-cccCCc--cccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccce
Confidence            9999999865544 111000  111100                                                 111


Q ss_pred             EEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeC-CCCceEEeccCCCCEEEEEEcCC-CeEEEEEC
Q 006825          509 ANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSWSKS-QHLLSSSM  586 (630)
Q Consensus       509 vafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL~GHs~~V~sLafSPd-~~LaSgS~  586 (630)
                      +..+|...+.+++..|+                    .+   ++++. ++++++....|...|+++++-|+ .+|++++.
T Consensus       495 vVs~~~~~~~~~~hed~--------------------~I---r~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~  551 (577)
T KOG0642|consen  495 VVSHPTADITFTAHEDR--------------------SI---RFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSH  551 (577)
T ss_pred             EEecCCCCeeEecccCC--------------------ce---ecccccccccchheeeccceecceeecCCCceEEeecC
Confidence            12222222222222222                    22   67776 88999999999999999999999 99999999


Q ss_pred             CCcEEEEeCCCCcEEEEEe
Q 006825          587 DKTVRLWHLSSKTCLKIFS  605 (630)
Q Consensus       587 DgtVrIWDl~tg~~l~t~~  605 (630)
                      |+.|++|.+....|+..+.
T Consensus       552 d~sv~l~kld~k~~~~es~  570 (577)
T KOG0642|consen  552 DGSVRLWKLDVKTCVLEST  570 (577)
T ss_pred             Cceeehhhccchheeeccc
Confidence            9999999999998887665

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.67  E-value=2.1e-15  Score=163.98  Aligned_cols=258  Identities=17%  Similarity=0.107  Sum_probs=188.9

Q ss_pred             eeeecCccceeEEEeec---ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCe--EEeecCCC-----
Q 006825          333 EMCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHK--ERRSSDER-----  402 (630)
Q Consensus       333 ~~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~--lasgS~D~-----  402 (630)
                      ..+.||++.|.+|...|   .||+|+.|+++| +|.+.||.|+++..  ....|+||||.|.+..  ||.+-.+.     
T Consensus       394 lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvr-iWEi~TgRcvr~~~--~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivn  470 (733)
T KOG0650|consen  394 LVYRGHTGLVRSISVDPSGEWLASGSDDGTVR-IWEIATGRCVRTVQ--FDSEIRSVAWNPLSDLCVLAVAVGECVLIVN  470 (733)
T ss_pred             eeEeccCCeEEEEEecCCcceeeecCCCCcEE-EEEeecceEEEEEe--ecceeEEEEecCCCCceeEEEEecCceEEeC
Confidence            45789999999999988   899999999999 99999999999886  4668999999998763  33322111     


Q ss_pred             -----------------CC--cc----------------cc-------CCcceEEEeecCCCe--EEEecC---CcEEEE
Q 006825          403 -----------------DT--SS----------------EK-------GGRRSSSATDDSQDV--SFHGQE---RVRVRQ  435 (630)
Q Consensus       403 -----------------dt--~s----------------~~-------gh~~~Vsa~~~s~d~--l~Sgs~---Dg~Vri  435 (630)
                                       ..  ..                ..       .|...|..+.....|  +++...   ...|.|
T Consensus       471 p~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~Vli  550 (733)
T KOG0650|consen  471 PIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLI  550 (733)
T ss_pred             ccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEE
Confidence                             00  00                01       122333344444444  333322   234555


Q ss_pred             EeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCC
Q 006825          436 YGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEP  515 (630)
Q Consensus       436 Wd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg  515 (630)
                      +++.-..     ....|+--.+.|.++.|+|.-.+|+.+.. ..|||||+..+..++++     ..-...|..++.+|.|
T Consensus       551 HQLSK~~-----sQ~PF~kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL-----~tg~kwiS~msihp~G  619 (733)
T KOG0650|consen  551 HQLSKRK-----SQSPFRKSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKL-----LTGSKWISSMSIHPNG  619 (733)
T ss_pred             Eeccccc-----ccCchhhcCCceeEEEecCCCceEEEEec-cceEEEehhHHHHHHHH-----hcCCeeeeeeeecCCC
Confidence            5543221     12335556788999999999888888775 68999999988777775     3334678999999999


Q ss_pred             CEEEEeeCCCeeeeecccccccccccccCccccccEEEeC--CCCceEEeccCCCCEEEEEEcCC-CeEEEEECCCcEEE
Q 006825          516 TSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL--SDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRL  592 (630)
Q Consensus       516 ~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl--sgk~l~tL~GHs~~V~sLafSPd-~~LaSgS~DgtVrI  592 (630)
                      .-|+.++.|+.+                       .+|++  +.++.+++.-|...|++|+|++. .+|++|+.|+++.|
T Consensus       620 Dnli~gs~d~k~-----------------------~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~V  676 (733)
T KOG0650|consen  620 DNLILGSYDKKM-----------------------CWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIV  676 (733)
T ss_pred             CeEEEecCCCee-----------------------EEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEE
Confidence            999999999998                       77777  67899999999999999999999 99999999999999


Q ss_pred             EeCC------CC---cEEEEEe-cCCc----eEEEE-cCCCcEEEEecce
Q 006825          593 WHLS------SK---TCLKIFS-HSDY----DISLV-DRLMLRFAYGAFL  627 (630)
Q Consensus       593 WDl~------tg---~~l~t~~-H~~~----V~sVa-s~~~~~lAsgs~~  627 (630)
                      +.-.      ..   -+++.+. |.-.    |..+. +|..-++.+++.+
T Consensus       677 fhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd  726 (733)
T KOG0650|consen  677 FHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGAD  726 (733)
T ss_pred             EeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCCceEEecCCC
Confidence            9642      11   2344554 5444    66666 8888888777655

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.67  E-value=1.4e-15  Score=154.03  Aligned_cols=205  Identities=17%  Similarity=0.192  Sum_probs=152.5

Q ss_pred             cCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCe---EEEecCCcEEEEEeCCCCc---cccee----e-
Q 006825          380 FKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDV---SFHGQERVRVRQYGKSCKD---LTALY----K-  448 (630)
Q Consensus       380 ~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~---l~Sgs~Dg~VriWd~~~~e---l~~~~----~-  448 (630)
                      .++|.+++.++|-. +           ...|...|.++...+..   +++|+.|+.|.+||++.-.   ...+.    | 
T Consensus        24 ~rRil~L~Ln~d~d-~-----------~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~   91 (397)
T KOG4283|consen   24 QRRILSLQLNNDKD-F-----------VRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCI   91 (397)
T ss_pred             hhhhheeeccCCcc-e-----------eccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeee
Confidence            35577777777632 2           34566777777766543   7899999999999986432   11111    1 


Q ss_pred             --eeEecccCcCEEEEEEcc-CCCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCC---CCEEEEee
Q 006825          449 --CQEIQAHNGSIWSIKFSL-DGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPE---PTSLSPKH  522 (630)
Q Consensus       449 --v~tL~gHt~~V~sVaFSp-DG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpd---g~~lasgs  522 (630)
                        .+.-.+|.-.|..+.|-| |.-++.|+|.|.++||||..+-+....+      ...+.|+.-+++|-   ..+||+|.
T Consensus        92 v~~~h~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F------~me~~VYshamSp~a~sHcLiA~gt  165 (397)
T KOG4283|consen   92 VAKQHENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDF------KMEGKVYSHAMSPMAMSHCLIAAGT  165 (397)
T ss_pred             ccccCCccceeeeeeeEEeeecCceeecccccceEEEeecccceeeEEe------ecCceeehhhcChhhhcceEEEEec
Confidence              133467999999999999 7778999999999999999988766554      23456777777775   45788888


Q ss_pred             CCCeeeeecccccccccccccCccccccEEEeC-CCCceEEeccCCCCEEEEEEcCC--CeEEEEECCCcEEEEeCCCC-
Q 006825          523 LDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSWSKS--QHLLSSSMDKTVRLWHLSSK-  598 (630)
Q Consensus       523 ~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL~GHs~~V~sLafSPd--~~LaSgS~DgtVrIWDl~tg-  598 (630)
                      .+-.|                       ++.++ +|..-++|.||.+.|.++.|+|.  -.|+|||.||+||+||++.. 
T Consensus       166 r~~~V-----------------------rLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRras  222 (397)
T KOG4283|consen  166 RDVQV-----------------------RLCDIASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRAS  222 (397)
T ss_pred             CCCcE-----------------------EEEeccCCcceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeeccc
Confidence            88888                       78888 89999999999999999999998  46789999999999999864 


Q ss_pred             cEEEEEe---------------cCCceEEEE-cCCCcEEEEec
Q 006825          599 TCLKIFS---------------HSDYDISLV-DRLMLRFAYGA  625 (630)
Q Consensus       599 ~~l~t~~---------------H~~~V~sVa-s~~~~~lAsgs  625 (630)
                      -|..++.               |.+.|..++ ..++..+++-+
T Consensus       223 gcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~g  265 (397)
T KOG4283|consen  223 GCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCG  265 (397)
T ss_pred             ceeEEeecccCccCccccccccccceeeeeeecccchhhhhcc
Confidence            4555443               556677777 55555554443

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.66  E-value=1.6e-16  Score=177.47  Aligned_cols=253  Identities=14%  Similarity=0.108  Sum_probs=188.6

Q ss_pred             ecceeeecCccceeEEEeec---ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCcc
Q 006825          330 EEFEMCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSS  406 (630)
Q Consensus       330 eef~~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s  406 (630)
                      .-+..|.||..+|.+++|-.   ++.+||+|..++ ||...++.++..++ ||...|+.+|.+-...+            
T Consensus       181 k~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvK-iwS~et~~~lAs~r-Ghs~ditdlavs~~n~~------------  246 (1113)
T KOG0644|consen  181 KNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVK-IWSMETARCLASCR-GHSGDITDLAVSSNNTM------------  246 (1113)
T ss_pred             HHHHHHHhhhhheeeeeeccccceEeecCccceee-eeeccchhhhccCC-CCccccchhccchhhhh------------
Confidence            34477999999999999977   899999999999 99999999999999 99999999888775443            


Q ss_pred             ccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECc
Q 006825          407 EKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVV  486 (630)
Q Consensus       407 ~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~  486 (630)
                                       +++++.|..||+|.+.++.     .+..|.||+++|++|+|+|-    ++.+.||++++||.+
T Consensus       247 -----------------iaaaS~D~vIrvWrl~~~~-----pvsvLrghtgavtaiafsP~----~sss~dgt~~~wd~r  300 (1113)
T KOG0644|consen  247 -----------------IAAASNDKVIRVWRLPDGA-----PVSVLRGHTGAVTAIAFSPR----ASSSDDGTCRIWDAR  300 (1113)
T ss_pred             -----------------hhhcccCceEEEEecCCCc-----hHHHHhccccceeeeccCcc----ccCCCCCceEecccc
Confidence                             4667778899999998875     46778999999999999994    378999999999987


Q ss_pred             CCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeeccccc------ccccccccC--c------cccccEE
Q 006825          487 ESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRS------INRKSLSLD--H------MVVPETV  552 (630)
Q Consensus       487 tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~------~~~~s~s~d--~------~i~~~~V  552 (630)
                      -...+ .............+.++.|...+..+++++.|+.-..|.....      ....+.+.+  .      ......+
T Consensus       301 ~~~~~-y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~v  379 (1113)
T KOG0644|consen  301 LEPRI-YVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCV  379 (1113)
T ss_pred             ccccc-cCCCCCCcccccceeeeeccccccccccccCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeee
Confidence            21111 1111111122245667777778888899988886655543220      000111111  0      0112278


Q ss_pred             EeC-CCCceEEeccCCCCEEEEEEcCC--CeEEEEECCCcEEEEeCCCCcEEEEEe--cCCceEEEEcCCCcEEEE
Q 006825          553 FAL-SDKPICSFQGHLDDVLDLSWSKS--QHLLSSSMDKTVRLWHLSSKTCLKIFS--HSDYDISLVDRLMLRFAY  623 (630)
Q Consensus       553 wdl-sgk~l~tL~GHs~~V~sLafSPd--~~LaSgS~DgtVrIWDl~tg~~l~t~~--H~~~V~sVas~~~~~lAs  623 (630)
                      |++ +|..++.+.||...+..|.|+|-  ....+++.||.+.|||+-.|..++.+.  |...|.+--++++..++.
T Consensus       380 wnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~gh~kl~d~kFSqdgts~~l  455 (1113)
T KOG0644|consen  380 WNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGHGKLVDGKFSQDGTSIAL  455 (1113)
T ss_pred             eecccchhhhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeecccceeeccccCCCCceEec
Confidence            988 89999999999999999999995  566799999999999999999888775  666665544555554443

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.66  E-value=4.2e-13  Score=137.63  Aligned_cols=230  Identities=22%  Similarity=0.292  Sum_probs=171.2

Q ss_pred             eEEEEcCCCc-eEeeecceeeecCc-cceeEEEe-ec----ceEe-ecCCCccEecccCCC-CceeEEecCCccCCEEEE
Q 006825          316 KKVKEVGTGR-QLTIEEFEMCVGHS-PIVQELMR-RQ----NVEE-GNKDSFDLNNNGSSG-GGMKSKKKGSWFKSIRTV  386 (630)
Q Consensus       316 ~~l~dv~TG~-~lt~eef~~l~GHs-~~V~~Laf-s~----~laS-gS~D~tvr~vWD~~t-G~~~~~lk~gH~~~V~sV  386 (630)
                      ..+|+...+. .+     ..+.++. ..+..+.+ .+    .++. +..|++++ +|+..+ +.....+. +|...|+.+
T Consensus        89 ~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~~~~~~~~~-~~~~~v~~~  161 (466)
T COG2319          89 IKLWDLDNGEKLI-----KSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVK-LWDLSTPGKLIRTLE-GHSESVTSL  161 (466)
T ss_pred             EEEEEcCCCceeE-----EEEeccCCCceeeEEEECCCcceEEeccCCCCccEE-EEEecCCCeEEEEEe-cCcccEEEE
Confidence            3455555554 22     3344422 24444444 32    2334 44489999 999988 77888888 999999999


Q ss_pred             EEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEec-CCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEc
Q 006825          387 ASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQ-ERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFS  465 (630)
Q Consensus       387 AfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs-~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFS  465 (630)
                      +|+|++++++.                             +. .++.+++|+.....     .+..+.+|...|.+++|+
T Consensus       162 ~~~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~v~~~~~~  207 (466)
T COG2319         162 AFSPDGKLLAS-----------------------------GSSLDGTIKLWDLRTGK-----PLSTLAGHTDPVSSLAFS  207 (466)
T ss_pred             EECCCCCEEEe-----------------------------cCCCCCceEEEEcCCCc-----eEEeeccCCCceEEEEEc
Confidence            99999875543                             33 37889999987632     467788899999999999


Q ss_pred             cCCC-EEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccC
Q 006825          466 LDGR-YLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLD  544 (630)
Q Consensus       466 pDG~-~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d  544 (630)
                      |++. ++++++.|++|++||...+......    ..+|...+ ...|+|++.++++++.++.+                 
T Consensus       208 ~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~----~~~~~~~~-~~~~~~~~~~~~~~~~d~~~-----------------  265 (466)
T COG2319         208 PDGGLLIASGSSDGTIRLWDLSTGKLLRST----LSGHSDSV-VSSFSPDGSLLASGSSDGTI-----------------  265 (466)
T ss_pred             CCcceEEEEecCCCcEEEEECCCCcEEeee----cCCCCcce-eEeECCCCCEEEEecCCCcE-----------------
Confidence            9998 6666699999999998866666521    36777765 44899999888899999999                 


Q ss_pred             ccccccEEEeCC-CC-ceEEeccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCCCcEEEEEe---cCCceEEEE
Q 006825          545 HMVVPETVFALS-DK-PICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS---HSDYDISLV  614 (630)
Q Consensus       545 ~~i~~~~Vwdls-gk-~l~tL~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg~~l~t~~---H~~~V~sVa  614 (630)
                            ++|+.. .. .+..+.+|...|.++.|.|+ ..+++++.|+.+++|++.+........   |...|..+.
T Consensus       266 ------~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  335 (466)
T COG2319         266 ------RLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLS  335 (466)
T ss_pred             ------EEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEE
Confidence                  667662 22 24555789999999999997 888889999999999999887665543   777677776

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.66  E-value=2.1e-15  Score=159.51  Aligned_cols=204  Identities=16%  Similarity=0.148  Sum_probs=149.0

Q ss_pred             ceEeecCCCccEecccCCCCce-eEEecCC-ccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCe---E
Q 006825          350 NVEEGNKDSFDLNNNGSSGGGM-KSKKKGS-WFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDV---S  424 (630)
Q Consensus       350 ~laSgS~D~tvr~vWD~~tG~~-~~~lk~g-H~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~---l  424 (630)
                      ++|-|..|..|- |||+.--.. ...+..| -.+.++ .++   |         +....-.+|+..|-++.+....   |
T Consensus       194 yvAiGtmdp~Ie-IWDLDI~d~v~P~~~LGs~~sk~~-~k~---~---------k~~~~~~gHTdavl~Ls~n~~~~nVL  259 (463)
T KOG0270|consen  194 YVAIGTMDPEIE-IWDLDIVDAVLPCVTLGSKASKKK-KKK---G---------KRSNSASGHTDAVLALSWNRNFRNVL  259 (463)
T ss_pred             eEEEeccCceeE-Eeccccccccccceeechhhhhhh-hhh---c---------ccccccccchHHHHHHHhccccceeE
Confidence            799999999999 999753211 1111111 000000 000   0         0011134677666666666544   9


Q ss_pred             EEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEcc-CCCEEEEEeCCCcEEEEECcCCceeeeeecccccCcc
Q 006825          425 FHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSL-DGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHL  503 (630)
Q Consensus       425 ~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSp-DG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~  503 (630)
                      ++|+.|.+|++||+.+++     +.+++..|.+.|.+++|+| ...+|++|+.|++|+|.|.+.......     .....
T Consensus       260 aSgsaD~TV~lWD~~~g~-----p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~-----~wk~~  329 (463)
T KOG0270|consen  260 ASGSADKTVKLWDVDTGK-----PKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGK-----EWKFD  329 (463)
T ss_pred             EecCCCceEEEEEcCCCC-----cceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCc-----eEEec
Confidence            999999999999999886     5678889999999999999 678999999999999999985322211     12234


Q ss_pred             cceEEEEECCC-CCEEEEeeCCCeeeeecccccccccccccCccccccEEEeC--CCCceEEeccCCCCEEEEEEcCC--
Q 006825          504 NMLLLANGSPE-PTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL--SDKPICSFQGHLDDVLDLSWSKS--  578 (630)
Q Consensus       504 ~~V~svafSpd-g~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl--sgk~l~tL~GHs~~V~sLafSPd--  578 (630)
                      +.|-.++|.|- ...++++..||++                       +-+++  .++++.+++.|.+.|.+|++++.  
T Consensus       330 g~VEkv~w~~~se~~f~~~tddG~v-----------------------~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p  386 (463)
T KOG0270|consen  330 GEVEKVAWDPHSENSFFVSTDDGTV-----------------------YYFDIRNPGKPVWTLKAHDDEISGLSVNIQTP  386 (463)
T ss_pred             cceEEEEecCCCceeEEEecCCceE-----------------------EeeecCCCCCceeEEEeccCCcceEEecCCCC
Confidence            66788899886 4566677789999                       66776  57999999999999999999987  


Q ss_pred             CeEEEEECCCcEEEEeCCCCcE
Q 006825          579 QHLLSSSMDKTVRLWHLSSKTC  600 (630)
Q Consensus       579 ~~LaSgS~DgtVrIWDl~tg~~  600 (630)
                      ++|+|+|.|++|+||++..-..
T Consensus       387 ~~l~t~s~d~~Vklw~~~~~~~  408 (463)
T KOG0270|consen  387 GLLSTASTDKVVKLWKFDVDSP  408 (463)
T ss_pred             cceeeccccceEEEEeecCCCC
Confidence            8999999999999999875443

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.65  E-value=1.6e-15  Score=157.11  Aligned_cols=232  Identities=15%  Similarity=0.114  Sum_probs=166.0

Q ss_pred             ceeeecCccceeEEEeec-ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCC-------C
Q 006825          332 FEMCVGHSPIVQELMRRQ-NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDER-------D  403 (630)
Q Consensus       332 f~~l~GHs~~V~~Lafs~-~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~-------d  403 (630)
                      +.++.-|.+.|+.|++.. ..++.+.|+||+ .|...- ..+++.- | ...+..+.-.-.+..++|++.+-       +
T Consensus       102 ~~~f~AH~G~V~Gi~v~~~~~~tvgdDKtvK-~wk~~~-~p~~til-g-~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~  177 (433)
T KOG0268|consen  102 IRTFKAHEGLVRGICVTQTSFFTVGDDKTVK-QWKIDG-PPLHTIL-G-KSVYLGIDHHRKNSVFATCGEQIDIWDEQRD  177 (433)
T ss_pred             hheeecccCceeeEEecccceEEecCCccee-eeeccC-Ccceeee-c-cccccccccccccccccccCceeeecccccC
Confidence            377788999999999988 788999999999 997643 3444443 1 22233344444445555555321       1


Q ss_pred             --CccccCCcceEEEeecCCCe---EEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCC
Q 006825          404 --TSSEKGGRRSSSATDDSQDV---SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDC  478 (630)
Q Consensus       404 --t~s~~gh~~~Vsa~~~s~d~---l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~Dg  478 (630)
                        ..+..=+...+.++.|++.-   |+++..|+.|.+||+......  ..+ .   -+..-+.|+|+|.+-.+++|++|.
T Consensus       178 ~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl--~KV-i---~~mRTN~IswnPeafnF~~a~ED~  251 (433)
T KOG0268|consen  178 NPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPL--KKV-I---LTMRTNTICWNPEAFNFVAANEDH  251 (433)
T ss_pred             CccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCcc--cee-e---eeccccceecCccccceeeccccc
Confidence              12244455566677777654   888889999999999876431  111 1   123356899999888899999999


Q ss_pred             cEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeCCC-
Q 006825          479 VIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSD-  557 (630)
Q Consensus       479 tIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsg-  557 (630)
                      .+..+|++.-......    ..+|...|..+.|+|.|+-+++|+.|.+|                       +||.... 
T Consensus       252 nlY~~DmR~l~~p~~v----~~dhvsAV~dVdfsptG~EfvsgsyDksI-----------------------RIf~~~~~  304 (433)
T KOG0268|consen  252 NLYTYDMRNLSRPLNV----HKDHVSAVMDVDFSPTGQEFVSGSYDKSI-----------------------RIFPVNHG  304 (433)
T ss_pred             cceehhhhhhcccchh----hcccceeEEEeccCCCcchhccccccceE-----------------------EEeecCCC
Confidence            9999999876544443    58999999999999999999999999999                       5665522 


Q ss_pred             CceEEeccCC---CCEEEEEEcCC-CeEEEEECCCcEEEEeCCCCcEEE
Q 006825          558 KPICSFQGHL---DDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLK  602 (630)
Q Consensus       558 k~l~tL~GHs---~~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg~~l~  602 (630)
                      ...-.+  |+   ..|.++.||-| +|++|||.|+.||||.....+.+.
T Consensus       305 ~SRdiY--htkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Aseklg  351 (433)
T KOG0268|consen  305 HSRDIY--HTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKASEKLG  351 (433)
T ss_pred             cchhhh--hHhhhheeeEEEEeccccEEEecCCCcceeeeecchhhhcC
Confidence            111111  22   35899999999 999999999999999986554443

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.64  E-value=1.3e-14  Score=154.06  Aligned_cols=268  Identities=13%  Similarity=0.066  Sum_probs=191.9

Q ss_pred             eeeecCccceeEEEeec-----ceEeecCCCccEecccCCCCc----eeEEecCCccCCEEEEEEcCC-CCeEEeecCCC
Q 006825          333 EMCVGHSPIVQELMRRQ-----NVEEGNKDSFDLNNNGSSGGG----MKSKKKGSWFKSIRTVASSVT-GHKERRSSDER  402 (630)
Q Consensus       333 ~~l~GHs~~V~~Lafs~-----~laSgS~D~tvr~vWD~~tG~----~~~~lk~gH~~~V~sVAfSpd-G~~lasgS~D~  402 (630)
                      ....-|...|.+|+|.|     .+|+|..-++|- +||+.+.+    ....+. .|...|.++.|+|. -..+.+.|.|+
T Consensus       180 ~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG-~Wn~~~~~~d~d~v~~f~-~hs~~Vs~l~F~P~n~s~i~ssSyDG  257 (498)
T KOG4328|consen  180 NVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVG-LWNFGTQEKDKDGVYLFT-PHSGPVSGLKFSPANTSQIYSSSYDG  257 (498)
T ss_pred             ceeEecccceEEEEecccCcceEEEEccCCCcEE-EEecCCCCCccCceEEec-cCCccccceEecCCChhheeeeccCc
Confidence            45566888999999999     688999999999 99995322    233444 89999999999994 34677777776


Q ss_pred             CC-------c------cccCCcceEEEeecCCCe--EEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEcc-
Q 006825          403 DT-------S------SEKGGRRSSSATDDSQDV--SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSL-  466 (630)
Q Consensus       403 dt-------~------s~~gh~~~Vsa~~~s~d~--l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSp-  466 (630)
                      .+       .      .+..-....+..+|+.+-  ++.+..-|...+||..++.-.    ...+.-|...|..|+++| 
T Consensus       258 tiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~----~~~~~lh~kKI~sv~~NP~  333 (498)
T KOG4328|consen  258 TIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSE----YENLRLHKKKITSVALNPV  333 (498)
T ss_pred             eeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCcc----chhhhhhhcccceeecCCC
Confidence            11       1      133344566666776654  666666678899998876432    233566889999999999 


Q ss_pred             CCCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCcc
Q 006825          467 DGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHM  546 (630)
Q Consensus       467 DG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~  546 (630)
                      ...+|||||.|+|++|||++.-.....- ......|...|.++.|+|.+-.|++.+.|..|++|+...            
T Consensus       334 ~p~~laT~s~D~T~kIWD~R~l~~K~sp-~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~------------  400 (498)
T KOG4328|consen  334 CPWFLATASLDQTAKIWDLRQLRGKASP-FLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSC------------  400 (498)
T ss_pred             CchheeecccCcceeeeehhhhcCCCCc-ceecccccceeeeeEEcCCCCceEeeccCCceEEeeccc------------
Confidence            5678999999999999999865443320 112468999999999999977799999999995554320            


Q ss_pred             ccccEEEeCCCCceEEeccCCC------CEEEEEEcCC-CeEEEEECCCcEEEEeCCCCcEEEEEe--cCCceEEEE--c
Q 006825          547 VVPETVFALSDKPICSFQGHLD------DVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS--HSDYDISLV--D  615 (630)
Q Consensus       547 i~~~~Vwdlsgk~l~tL~GHs~------~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg~~l~t~~--H~~~V~sVa--s  615 (630)
                            +.....++.++. |..      ......|.|+ .+++.|-.-..|-|+|-..++.+..+.  ....|.++-  +
T Consensus       401 ------~sa~~~p~~~I~-Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~H  473 (498)
T KOG4328|consen  401 ------ISAKDEPLGTIP-HNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFH  473 (498)
T ss_pred             ------ccccCCccceee-ccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeec
Confidence                  000112222222 221      2345689999 999999999999999999999887765  445677777  8


Q ss_pred             CCCcEEEEecc
Q 006825          616 RLMLRFAYGAF  626 (630)
Q Consensus       616 ~~~~~lAsgs~  626 (630)
                      |....+++|+.
T Consensus       474 P~~~~~~aG~~  484 (498)
T KOG4328|consen  474 PMRDTLAAGGN  484 (498)
T ss_pred             ccccceeccCC
Confidence            88776666654

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.64  E-value=1e-13  Score=148.59  Aligned_cols=263  Identities=12%  Similarity=0.053  Sum_probs=192.9

Q ss_pred             eeeecCccceeEEEeec-------ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCC-CeEEeecCCC--
Q 006825          333 EMCVGHSPIVQELMRRQ-------NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTG-HKERRSSDER--  402 (630)
Q Consensus       333 ~~l~GHs~~V~~Lafs~-------~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG-~~lasgS~D~--  402 (630)
                      +.+-.....|.+++|++       ..+--+.+..+. +||...+......+ .-...|..++|.|.+ .++++.+...  
T Consensus       148 ~V~g~f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lS-VWdWqk~~~~~~vk-~sne~v~~a~FHPtd~nliit~Gk~H~~  225 (626)
T KOG2106|consen  148 HVIGFFDRGVTCVAFSKINGGSLLCAVDDSNPHMLS-VWDWQKKAKLGPVK-TSNEVVFLATFHPTDPNLIITCGKGHLY  225 (626)
T ss_pred             eeeccccccceeeeecccCCCceEEEecCCCccccc-hhhchhhhccCcce-eccceEEEEEeccCCCcEEEEeCCceEE
Confidence            33445567789999998       234456677777 99999888877777 666778899999954 4666655433  


Q ss_pred             ----C-------Ccc-ccCCcceEEEeecCCCe-EEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCC
Q 006825          403 ----D-------TSS-EKGGRRSSSATDDSQDV-SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGR  469 (630)
Q Consensus       403 ----d-------t~s-~~gh~~~Vsa~~~s~d~-l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~  469 (630)
                          .       ... ++..+..|.++.|..++ +++|..+|.|.||++.+..+     .++..+|.+.|.+++.-.+|.
T Consensus       226 Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engdviTgDS~G~i~Iw~~~~~~~-----~k~~~aH~ggv~~L~~lr~Gt  300 (626)
T KOG2106|consen  226 FWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGDVITGDSGGNILIWSKGTNRI-----SKQVHAHDGGVFSLCMLRDGT  300 (626)
T ss_pred             EEEccCCceEEEeeccccccceEEEEEEEcCCCCEEeecCCceEEEEeCCCceE-----EeEeeecCCceEEEEEecCcc
Confidence                1       111 33344789999999999 99999999999999976643     233349999999999999998


Q ss_pred             EEEEEeCCCcEEEEECcCCce-----------eeee----------------ec--------ccccCcccceEEEEECCC
Q 006825          470 YLASAGEDCVIHVWQVVESER-----------KGEL----------------LE--------KQEDGHLNMLLLANGSPE  514 (630)
Q Consensus       470 ~LASgS~DgtIrVWDl~tg~~-----------~~~l----------------~~--------~~~~gh~~~V~svafSpd  514 (630)
                      +|- |+.|+.|..||-.-.+.           ++.+                +.        ....+|....+.++.+|+
T Consensus       301 llS-GgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps  379 (626)
T KOG2106|consen  301 LLS-GGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPS  379 (626)
T ss_pred             Eee-cCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCC
Confidence            555 99999999998311000           0000                00        012466677788899999


Q ss_pred             CCEEEEeeCCCeeeeecccccccccccccCccccccEEEeCCCCceEEeccCCCCEEEEEEcCCCeEEEEECCCcEEEEe
Q 006825          515 PTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKSQHLLSSSMDKTVRLWH  594 (630)
Q Consensus       515 g~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL~GHs~~V~sLafSPd~~LaSgS~DgtVrIWD  594 (630)
                      ...+++++.|+++.+|+..+                .+|.        .. -.+++.|+.|+|.+.||.|...|...+.|
T Consensus       380 ~~q~~T~gqdk~v~lW~~~k----------------~~wt--------~~-~~d~~~~~~fhpsg~va~Gt~~G~w~V~d  434 (626)
T KOG2106|consen  380 KNQLLTCGQDKHVRLWNDHK----------------LEWT--------KI-IEDPAECADFHPSGVVAVGTATGRWFVLD  434 (626)
T ss_pred             hhheeeccCcceEEEccCCc----------------eeEE--------EE-ecCceeEeeccCcceEEEeeccceEEEEe
Confidence            99999999999995555222                2222        11 33567899999999999999999999999


Q ss_pred             CCCCcEEEEEecCCceEEEE-cCCCcEEEEeccee
Q 006825          595 LSSKTCLKIFSHSDYDISLV-DRLMLRFAYGAFLN  628 (630)
Q Consensus       595 l~tg~~l~t~~H~~~V~sVa-s~~~~~lAsgs~~n  628 (630)
                      .++...+..-..+.++++|+ +|.+..||.|+.++
T Consensus       435 ~e~~~lv~~~~d~~~ls~v~ysp~G~~lAvgs~d~  469 (626)
T KOG2106|consen  435 TETQDLVTIHTDNEQLSVVRYSPDGAFLAVGSHDN  469 (626)
T ss_pred             cccceeEEEEecCCceEEEEEcCCCCEEEEecCCC
Confidence            99965555444788899999 99999999998764

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.63  E-value=2.6e-14  Score=151.96  Aligned_cols=259  Identities=15%  Similarity=0.101  Sum_probs=195.9

Q ss_pred             ccceeEEEeec---ceEeecCCCccEecccCCC--CceeEEecCCccCCEEEEEEcCCCC-eEEeecCCC-------CCc
Q 006825          339 SPIVQELMRRQ---NVEEGNKDSFDLNNNGSSG--GGMKSKKKGSWFKSIRTVASSVTGH-KERRSSDER-------DTS  405 (630)
Q Consensus       339 s~~V~~Lafs~---~laSgS~D~tvr~vWD~~t--G~~~~~lk~gH~~~V~sVAfSpdG~-~lasgS~D~-------dt~  405 (630)
                      ...|++|.|+|   .|.+++.|+++| ++-+..  ...++.+. --.-+|.+.+|.|+|+ .+.+++.-+       .+.
T Consensus       213 ~~~I~sv~FHp~~plllvaG~d~~lr-ifqvDGk~N~~lqS~~-l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~a  290 (514)
T KOG2055|consen  213 HGGITSVQFHPTAPLLLVAGLDGTLR-IFQVDGKVNPKLQSIH-LEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETA  290 (514)
T ss_pred             cCCceEEEecCCCceEEEecCCCcEE-EEEecCccChhheeee-eccCccceeeecCCCceEEEecccceEEEEeecccc
Confidence            35689999998   789999999999 997642  23333333 2345899999999999 777776555       111


Q ss_pred             c------ccCC-cceEEEeecCCCe--EEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeC
Q 006825          406 S------EKGG-RRSSSATDDSQDV--SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGE  476 (630)
Q Consensus       406 s------~~gh-~~~Vsa~~~s~d~--l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~  476 (630)
                      +      ..|+ ...+.-...+++.  ++..+..|.|.+.-..++++.     .+++ -.+.|..++|+.||+.|+..+.
T Consensus       291 k~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli-----~s~K-ieG~v~~~~fsSdsk~l~~~~~  364 (514)
T KOG2055|consen  291 KVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELI-----TSFK-IEGVVSDFTFSSDSKELLASGG  364 (514)
T ss_pred             ccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhh-----heee-eccEEeeEEEecCCcEEEEEcC
Confidence            1      2333 2345555555555  888999999999999888763     3333 4678999999999999999999


Q ss_pred             CCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeCC
Q 006825          477 DCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALS  556 (630)
Q Consensus       477 DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdls  556 (630)
                      +|.|.+||++...++..+..   .| .-.-.+++.++++.++|+|+..|.|.+++...                ..-...
T Consensus       365 ~GeV~v~nl~~~~~~~rf~D---~G-~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s----------------~~~s~~  424 (514)
T KOG2055|consen  365 TGEVYVWNLRQNSCLHRFVD---DG-SVHGTSLCISLNGSYLATGSDSGIVNIYDGNS----------------CFASTN  424 (514)
T ss_pred             CceEEEEecCCcceEEEEee---cC-ccceeeeeecCCCceEEeccCcceEEEeccch----------------hhccCC
Confidence            99999999999988877641   11 12335778889999999999999997666442                111124


Q ss_pred             CCceEEeccCCCCEEEEEEcCC-CeEEEEE--CCCcEEEEeCCCCcEEEEEe----cCCceEEEE-cCCCcEEEEec
Q 006825          557 DKPICSFQGHLDDVLDLSWSKS-QHLLSSS--MDKTVRLWHLSSKTCLKIFS----HSDYDISLV-DRLMLRFAYGA  625 (630)
Q Consensus       557 gk~l~tL~GHs~~V~sLafSPd-~~LaSgS--~DgtVrIWDl~tg~~l~t~~----H~~~V~sVa-s~~~~~lAsgs  625 (630)
                      .+|+.++..-+..|+.|+|+|+ ++||-+|  .+.++||-++.+.+....|+    .-+.|+|++ +|.+.++|.|.
T Consensus       425 PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGN  501 (514)
T KOG2055|consen  425 PKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGN  501 (514)
T ss_pred             CCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeec
Confidence            5788888888889999999999 8877555  58899999999988877776    457899999 99999999884

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.62  E-value=3.7e-14  Score=148.39  Aligned_cols=229  Identities=14%  Similarity=0.191  Sum_probs=168.4

Q ss_pred             EEEEECCCCcEEEEeeecCCCceeEEEEcCCCceEeeecceeeecCccceeEEEeec----ceEeecCCCccEecccCCC
Q 006825          293 CLIKNLDNGKEFVVNEIQEDGTWKKVKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQ----NVEEGNKDSFDLNNNGSSG  368 (630)
Q Consensus       293 ~~I~~LddG~~~~v~e~~~dg~~~~l~dv~TG~~lt~eef~~l~GHs~~V~~Lafs~----~laSgS~D~tvr~vWD~~t  368 (630)
                      -.|++-..|.-|+|.-.++           +|+.-  ...-.+-||+..|..++|.|    .+||||.|.+|. ||.+-.
T Consensus        48 Avi~easgGgaf~ViPl~k-----------~Gr~d--~~~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~-vW~IPe  113 (472)
T KOG0303|consen   48 AVIIEASGGGAFLVIPLVK-----------TGRMD--ASYPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVM-VWQIPE  113 (472)
T ss_pred             EEEEecCCCcceeeccccc-----------ccccC--CCCCCccCccccccccccCccCCceeecCCCCceEE-EEECCC
Confidence            5677777777787766544           44332  22355789999999999999    699999999999 998754


Q ss_pred             C-------ceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCC
Q 006825          369 G-------GMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCK  441 (630)
Q Consensus       369 G-------~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~  441 (630)
                      +       +....|. ||.+.|.-|+|.|.-                            ..+|++++.|.+|.+|++.++
T Consensus       114 ~~l~~~ltepvv~L~-gH~rrVg~V~wHPtA----------------------------~NVLlsag~Dn~v~iWnv~tg  164 (472)
T KOG0303|consen  114 NGLTRDLTEPVVELY-GHQRRVGLVQWHPTA----------------------------PNVLLSAGSDNTVSIWNVGTG  164 (472)
T ss_pred             cccccCcccceEEEe-ecceeEEEEeecccc----------------------------hhhHhhccCCceEEEEeccCC
Confidence            3       2355666 999999999999852                            355788999999999999988


Q ss_pred             cccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccc-eEEEEECCCCCEEEE
Q 006825          442 DLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNM-LLLANGSPEPTSLSP  520 (630)
Q Consensus       442 el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~-V~svafSpdg~~las  520 (630)
                      +.     +-+|. |.+.|+++.|+.||.+|+|.+.|+.|||||.++++.+.+-     .+|.+. -..+.|-.++.++.+
T Consensus       165 ea-----li~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~-----~~heG~k~~Raifl~~g~i~tT  233 (472)
T KOG0303|consen  165 EA-----LITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEG-----VAHEGAKPARAIFLASGKIFTT  233 (472)
T ss_pred             ce-----eeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeec-----ccccCCCcceeEEeccCceeee
Confidence            63     34566 9999999999999999999999999999999999988773     456543 334556677885555


Q ss_pred             ee---CCCeeeeecccccccccccccCccccccEEEeCC--CCc--eEEeccCCCCEEEEEEcCC-CeE-EEEECCCcEE
Q 006825          521 KH---LDNHLEKKRRGRSINRKSLSLDHMVVPETVFALS--DKP--ICSFQGHLDDVLDLSWSKS-QHL-LSSSMDKTVR  591 (630)
Q Consensus       521 gs---~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdls--gk~--l~tL~GHs~~V~sLafSPd-~~L-aSgS~DgtVr  591 (630)
                      |.   .+..+                       .+|+..  .++  +.+|. -...|.---|.++ +++ +.|-.|+.||
T Consensus       234 Gfsr~seRq~-----------------------aLwdp~nl~eP~~~~elD-tSnGvl~PFyD~dt~ivYl~GKGD~~IR  289 (472)
T KOG0303|consen  234 GFSRMSERQI-----------------------ALWDPNNLEEPIALQELD-TSNGVLLPFYDPDTSIVYLCGKGDSSIR  289 (472)
T ss_pred             ccccccccce-----------------------eccCcccccCcceeEEec-cCCceEEeeecCCCCEEEEEecCCcceE
Confidence            53   22334                       556652  122  23333 2334555556777 554 5667799999


Q ss_pred             EEeCCCCc
Q 006825          592 LWHLSSKT  599 (630)
Q Consensus       592 IWDl~tg~  599 (630)
                      .|.+....
T Consensus       290 YyEit~d~  297 (472)
T KOG0303|consen  290 YFEITNEP  297 (472)
T ss_pred             EEEecCCC
Confidence            99987655

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.62  E-value=4.6e-13  Score=143.64  Aligned_cols=266  Identities=10%  Similarity=0.074  Sum_probs=201.3

Q ss_pred             EEEEcCCCceEeeecceeeecCc-cceeEEEeec--ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCC
Q 006825          317 KVKEVGTGRQLTIEEFEMCVGHS-PIVQELMRRQ--NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGH  393 (630)
Q Consensus       317 ~l~dv~TG~~lt~eef~~l~GHs-~~V~~Lafs~--~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~  393 (630)
                      .+|...+|-..  +....+.++. ..|.++.|.+  .+++|-.++++- ||+..+.+..+... .|.+.|.++..-.+|+
T Consensus       225 ~Fw~~~~~~l~--k~~~~fek~ekk~Vl~v~F~engdviTgDS~G~i~-Iw~~~~~~~~k~~~-aH~ggv~~L~~lr~Gt  300 (626)
T KOG2106|consen  225 YFWTLRGGSLV--KRQGIFEKREKKFVLCVTFLENGDVITGDSGGNIL-IWSKGTNRISKQVH-AHDGGVFSLCMLRDGT  300 (626)
T ss_pred             EEEEccCCceE--EEeeccccccceEEEEEEEcCCCCEEeecCCceEE-EEeCCCceEEeEee-ecCCceEEEEEecCcc
Confidence            57887777655  2223333433 6799999999  799999999999 99997777777777 8999999999999998


Q ss_pred             eEEeecCCC-----C-------CccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEE
Q 006825          394 KERRSSDER-----D-------TSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWS  461 (630)
Q Consensus       394 ~lasgS~D~-----d-------t~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~s  461 (630)
                      ++- |..|+     +       .-.++.....+..+.-....++.|.....|..=.+..+      ...+..+|....+.
T Consensus       301 llS-GgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~------f~~~v~gh~delwg  373 (626)
T KOG2106|consen  301 LLS-GGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENG------FTLTVQGHGDELWG  373 (626)
T ss_pred             Eee-cCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCC------ceEEEEecccceee
Confidence            776 88887     1       11144455566666655555777777777765555433      23567899999999


Q ss_pred             EEEccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeeccccccccccc
Q 006825          462 IKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSL  541 (630)
Q Consensus       462 VaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~  541 (630)
                      ++.+|+...|+|++.|+.++||+  ..+.+..      ..-..++.++.|+|.| .++.|...|.+              
T Consensus       374 la~hps~~q~~T~gqdk~v~lW~--~~k~~wt------~~~~d~~~~~~fhpsg-~va~Gt~~G~w--------------  430 (626)
T KOG2106|consen  374 LATHPSKNQLLTCGQDKHVRLWN--DHKLEWT------KIIEDPAECADFHPSG-VVAVGTATGRW--------------  430 (626)
T ss_pred             EEcCCChhheeeccCcceEEEcc--CCceeEE------EEecCceeEeeccCcc-eEEEeeccceE--------------
Confidence            99999999999999999999999  3333333      2234678899999999 89999988877              


Q ss_pred             ccCccccccEEEeCCCCceEEeccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCCC-cEEEEEe--cCCceEEEE-cC
Q 006825          542 SLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSK-TCLKIFS--HSDYDISLV-DR  616 (630)
Q Consensus       542 s~d~~i~~~~Vwdlsgk~l~tL~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg-~~l~t~~--H~~~V~sVa-s~  616 (630)
                               .+.+...+.+.++..-..+++++.|+|+ .+||.|+.|+.|+||.+... ..+..+.  |..+|+.+. ++
T Consensus       431 ---------~V~d~e~~~lv~~~~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~  501 (626)
T KOG2106|consen  431 ---------FVLDTETQDLVTIHTDNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSS  501 (626)
T ss_pred             ---------EEEecccceeEEEEecCCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecC
Confidence                     6666644555555545889999999999 99999999999999999764 4444444  778888888 77


Q ss_pred             CCcEEEEec
Q 006825          617 LMLRFAYGA  625 (630)
Q Consensus       617 ~~~~lAsgs  625 (630)
                      +..++.+-+
T Consensus       502 Ds~~~~~~S  510 (626)
T KOG2106|consen  502 DSQFLVSNS  510 (626)
T ss_pred             CCceEEecc
Confidence            766666543

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.61  E-value=6.7e-13  Score=136.17  Aligned_cols=232  Identities=24%  Similarity=0.290  Sum_probs=180.1

Q ss_pred             eeecCccceeEEEeec---ceEeecCCCccEecccCCCCc-eeEEecCCccCCEEEEEE-cCCCCeEEeecCCCCCcccc
Q 006825          334 MCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGG-MKSKKKGSWFKSIRTVAS-SVTGHKERRSSDERDTSSEK  408 (630)
Q Consensus       334 ~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~-~~~~lk~gH~~~V~sVAf-SpdG~~lasgS~D~dt~s~~  408 (630)
                      .+.+|...|..+.|.+   .++.++.|+.+. +|+...+. ....+...+...+..+.+ .+++..++            
T Consensus        60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------  126 (466)
T COG2319          60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIK-LWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSIL------------  126 (466)
T ss_pred             eeeeccceEEEEEECCCCcEEEEecCCCcEE-EEEcCCCceeEEEEeccCCCceeeEEEECCCcceEE------------
Confidence            4678999999999987   678888999999 99998887 666766224346666666 66554111            


Q ss_pred             CCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeC-CCcEEEEECcC
Q 006825          409 GGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGE-DCVIHVWQVVE  487 (630)
Q Consensus       409 gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~-DgtIrVWDl~t  487 (630)
                                     +..+..++.+++|+....    ......+..|...|..++|+|+++++++++. |+.+++|++..
T Consensus       127 ---------------~~~~~~d~~~~~~~~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (466)
T COG2319         127 ---------------LASSSLDGTVKLWDLSTP----GKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRT  187 (466)
T ss_pred             ---------------eccCCCCccEEEEEecCC----CeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCC
Confidence                           122344789999998751    1246778999999999999999999999986 99999999998


Q ss_pred             CceeeeeecccccCcccceEEEEECCCCC-EEEEeeCCCeeeeecccccccccccccCccccccEEEeC-CCCceE-Eec
Q 006825          488 SERKGELLEKQEDGHLNMLLLANGSPEPT-SLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPIC-SFQ  564 (630)
Q Consensus       488 g~~~~~l~~~~~~gh~~~V~svafSpdg~-~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~-tL~  564 (630)
                      +..+..+     .+|...+..++|+|++. ++++++.|+.|                       .+|+. .+..+. .+.
T Consensus       188 ~~~~~~~-----~~~~~~v~~~~~~~~~~~~~~~~~~d~~i-----------------------~~wd~~~~~~~~~~~~  239 (466)
T COG2319         188 GKPLSTL-----AGHTDPVSSLAFSPDGGLLIASGSSDGTI-----------------------RLWDLSTGKLLRSTLS  239 (466)
T ss_pred             CceEEee-----ccCCCceEEEEEcCCcceEEEEecCCCcE-----------------------EEEECCCCcEEeeecC
Confidence            6666664     66999999999999998 55555889988                       56665 456666 688


Q ss_pred             cCCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCCCcE-EEEEe-cCCceEEEE-cCCCcEEEEecc
Q 006825          565 GHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTC-LKIFS-HSDYDISLV-DRLMLRFAYGAF  626 (630)
Q Consensus       565 GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg~~-l~t~~-H~~~V~sVa-s~~~~~lAsgs~  626 (630)
                      +|...+ -..|+|+ .++++++.|+.+++|++..... +..+. |...|.++. .|....+++++.
T Consensus       240 ~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  304 (466)
T COG2319         240 GHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSS  304 (466)
T ss_pred             CCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEEeeC
Confidence            999886 4489999 7999999999999999997665 55554 899999998 776666666543

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.61  E-value=7.7e-14  Score=142.01  Aligned_cols=218  Identities=12%  Similarity=0.031  Sum_probs=168.9

Q ss_pred             eeecCccceeEEEeec---ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCC--eEEeecCCC-----C
Q 006825          334 MCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGH--KERRSSDER-----D  403 (630)
Q Consensus       334 ~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~--~lasgS~D~-----d  403 (630)
                      ....|...|..++|+.   .+++|+.|+.++ +||+.+|+ ..++. .|...|+++.|-+...  .|++||.||     |
T Consensus        67 a~~~~~~PvL~v~WsddgskVf~g~~Dk~~k-~wDL~S~Q-~~~v~-~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD  143 (347)
T KOG0647|consen   67 AQQSHDGPVLDVCWSDDGSKVFSGGCDKQAK-LWDLASGQ-VSQVA-AHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWD  143 (347)
T ss_pred             hhhccCCCeEEEEEccCCceEEeeccCCceE-EEEccCCC-eeeee-ecccceeEEEEecCCCcceeEecccccceeecc
Confidence            3456889999999998   799999999999 99999994 44555 8999999999998666  799999998     4


Q ss_pred             Ccc-----ccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccC----cCEEEEEEccCCCEEEEE
Q 006825          404 TSS-----EKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHN----GSIWSIKFSLDGRYLASA  474 (630)
Q Consensus       404 t~s-----~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt----~~V~sVaFSpDG~~LASg  474 (630)
                      +.+     ...-...|.+++.-...++.+..+..|.+|+++.+.       .+++.|.    -.+.||+..+|....|-|
T Consensus       144 ~R~~~pv~t~~LPeRvYa~Dv~~pm~vVata~r~i~vynL~n~~-------te~k~~~SpLk~Q~R~va~f~d~~~~alG  216 (347)
T KOG0647|consen  144 TRSSNPVATLQLPERVYAADVLYPMAVVATAERHIAVYNLENPP-------TEFKRIESPLKWQTRCVACFQDKDGFALG  216 (347)
T ss_pred             cCCCCeeeeeeccceeeehhccCceeEEEecCCcEEEEEcCCCc-------chhhhhcCcccceeeEEEEEecCCceEee
Confidence            332     112233567777777778888899999999997652       2233333    358999999988888999


Q ss_pred             eCCCcEEEEECcCCceeeeeecccccCc---------ccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCc
Q 006825          475 GEDCVIHVWQVVESERKGELLEKQEDGH---------LNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDH  545 (630)
Q Consensus       475 S~DgtIrVWDl~tg~~~~~l~~~~~~gh---------~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~  545 (630)
                      +-.|.+-|-.+..+.....+.   +..|         ...|..|+|+|....|++++.||++                  
T Consensus       217 siEGrv~iq~id~~~~~~nFt---FkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf------------------  275 (347)
T KOG0647|consen  217 SIEGRVAIQYIDDPNPKDNFT---FKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTF------------------  275 (347)
T ss_pred             eecceEEEEecCCCCccCcee---EEEeccCCCCCCceEEecceEeecccceEEEecCCceE------------------
Confidence            999999999998764333322   1222         3457789999999999999999999                  


Q ss_pred             cccccEEEeC-CCCceEEeccCCCCEEEEEEcCC-CeEEEE-ECC
Q 006825          546 MVVPETVFAL-SDKPICSFQGHLDDVLDLSWSKS-QHLLSS-SMD  587 (630)
Q Consensus       546 ~i~~~~Vwdl-sgk~l~tL~GHs~~V~sLafSPd-~~LaSg-S~D  587 (630)
                           .+||- ....+++.+.|..+|++.+|+.+ .++|-+ +.|
T Consensus       276 -----~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA~gYD  315 (347)
T KOG0647|consen  276 -----SFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYALGYD  315 (347)
T ss_pred             -----EEecchhhhhhhccCcCCCccceeEecCCCCEEEEEeecc
Confidence                 66766 45677888889999999999998 777644 445

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.60  E-value=1e-13  Score=157.15  Aligned_cols=220  Identities=14%  Similarity=0.118  Sum_probs=180.5

Q ss_pred             ecCCccCCEEEEEEcCCCCeEEeecCCCCCcc------------ccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCc
Q 006825          375 KKGSWFKSIRTVASSVTGHKERRSSDERDTSS------------EKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKD  442 (630)
Q Consensus       375 lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s------------~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~e  442 (630)
                      ++..|+.....|+|.|+|+.|.+++.|+++..            ...+...|.+++.....+++++.+.+|.+|....++
T Consensus         8 lRyaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s~~f~~~s~~~tv~~y~fps~~   87 (933)
T KOG1274|consen    8 LRYAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACYSNHFLTGSEQNTVLRYKFPSGE   87 (933)
T ss_pred             chhhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeecccceEEeeccceEEEeeCCCCC
Confidence            34589999999999999999999888873222            222666788888877789999999999999987775


Q ss_pred             ccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEee
Q 006825          443 LTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKH  522 (630)
Q Consensus       443 l~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs  522 (630)
                      ..     ..|..-+-++.+++|+.+|+++|.||.|-.|||-++.+......+     .+|..+|.++.|+|.+.+||+.+
T Consensus        88 ~~-----~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~l-----rgh~apVl~l~~~p~~~fLAvss  157 (933)
T KOG1274|consen   88 ED-----TILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVL-----RGHDAPVLQLSYDPKGNFLAVSS  157 (933)
T ss_pred             cc-----ceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheee-----cccCCceeeeeEcCCCCEEEEEe
Confidence            42     234556778999999999999999999999999999988877774     89999999999999999999999


Q ss_pred             CCCeeeeecccccccccccccCccccccEEEeC-CCCceEEecc--------CCCCEEEEEEcCC-CeEEEEECCCcEEE
Q 006825          523 LDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQG--------HLDDVLDLSWSKS-QHLLSSSMDKTVRL  592 (630)
Q Consensus       523 ~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL~G--------Hs~~V~sLafSPd-~~LaSgS~DgtVrI  592 (630)
                      .||+|                       ++|++ ++.+..++.+        -...+..++|+|+ +.|+..+.|++|++
T Consensus       158 ~dG~v-----------------------~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkv  214 (933)
T KOG1274|consen  158 CDGKV-----------------------QIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKV  214 (933)
T ss_pred             cCceE-----------------------EEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEE
Confidence            99999                       55555 3333333322        1455788999999 99999999999999


Q ss_pred             EeCCCCcEEEEEe---cCCceEEEE-cCCCcEEEEecce
Q 006825          593 WHLSSKTCLKIFS---HSDYDISLV-DRLMLRFAYGAFL  627 (630)
Q Consensus       593 WDl~tg~~l~t~~---H~~~V~sVa-s~~~~~lAsgs~~  627 (630)
                      ++....+.+..+.   |...+.+++ +|.|.+||++...
T Consensus       215 y~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~  253 (933)
T KOG1274|consen  215 YSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLD  253 (933)
T ss_pred             EccCCceeheeecccccccceEEEEEcCCCcEEeeeccC
Confidence            9999999999886   444477777 9999999998654

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.60  E-value=2.3e-14  Score=152.48  Aligned_cols=223  Identities=17%  Similarity=0.163  Sum_probs=165.9

Q ss_pred             eEeecCCCc-cEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecC
Q 006825          351 VEEGNKDSF-DLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQE  429 (630)
Q Consensus       351 laSgS~D~t-vr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~  429 (630)
                      +.++|.|.. ++ +||+.||...-+++++-...=.++.. ..++|+++                            +-..
T Consensus        10 ~sssS~d~~~~~-~~dl~TGt~~~~ykg~~~a~~~sl~~-l~~~ylls----------------------------aq~~   59 (476)
T KOG0646|consen   10 CSSSSFDPINCI-VWDLRTGTSLLQYKGSYLAQAASLTA-LNNEYLLS----------------------------AQLK   59 (476)
T ss_pred             EeccCCCCccee-EEecCCCceeEEecCcccccchhhhh-hchhheee----------------------------eccc
Confidence            456677877 66 99999999999888421110000000 01133332                            2223


Q ss_pred             CcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEE
Q 006825          430 RVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLA  509 (630)
Q Consensus       430 Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~sv  509 (630)
                      .-.|.+|.+.-++...++     .--.++|.+++-+|+|.+|+.|..-+.|.+|.+.+|..+..+     .+|-..|+++
T Consensus        60 rp~l~vw~i~k~~~~~q~-----~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~-----~aHYQ~ITcL  129 (476)
T KOG0646|consen   60 RPLLHVWEILKKDQVVQY-----IVLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVL-----SAHYQSITCL  129 (476)
T ss_pred             CccccccccCchhhhhhh-----cccccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHH-----HhhccceeEE
Confidence            346888887544332211     224578999999999999998889999999999999988774     8999999999


Q ss_pred             EECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeCCCCceEEeccCCCCEEEEEEcCC---CeEEEEEC
Q 006825          510 NGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS---QHLLSSSM  586 (630)
Q Consensus       510 afSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL~GHs~~V~sLafSPd---~~LaSgS~  586 (630)
                      .|+.|+.+|++++.||.|.+|......     +.+..        .+-++++.|..|+-.|+++...+.   .+|+|+|.
T Consensus       130 ~fs~dgs~iiTgskDg~V~vW~l~~lv-----~a~~~--------~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~  196 (476)
T KOG0646|consen  130 KFSDDGSHIITGSKDGAVLVWLLTDLV-----SADND--------HSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASE  196 (476)
T ss_pred             EEeCCCcEEEecCCCccEEEEEEEeec-----ccccC--------CCccceeeeccCcceeEEEEecCCCccceEEEecC
Confidence            999999999999999999777643210     00000        034789999999999999988764   89999999


Q ss_pred             CCcEEEEeCCCCcEEEEEecCCceEEEE-cCCCcEEEEecc
Q 006825          587 DKTVRLWHLSSKTCLKIFSHSDYDISLV-DRLMLRFAYGAF  626 (630)
Q Consensus       587 DgtVrIWDl~tg~~l~t~~H~~~V~sVa-s~~~~~lAsgs~  626 (630)
                      |.|||+||+..|.++.++.-...+.+++ +|....+..|+.
T Consensus       197 D~t~k~wdlS~g~LLlti~fp~si~av~lDpae~~~yiGt~  237 (476)
T KOG0646|consen  197 DRTIKLWDLSLGVLLLTITFPSSIKAVALDPAERVVYIGTE  237 (476)
T ss_pred             CceEEEEEeccceeeEEEecCCcceeEEEcccccEEEecCC
Confidence            9999999999999999999888899999 887777766643

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.60  E-value=1.7e-13  Score=151.27  Aligned_cols=223  Identities=15%  Similarity=0.156  Sum_probs=176.2

Q ss_pred             ceeEEEeec---ceEeecCCCccEecccCCCCc-eeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEE
Q 006825          341 IVQELMRRQ---NVEEGNKDSFDLNNNGSSGGG-MKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSA  416 (630)
Q Consensus       341 ~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~-~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa  416 (630)
                      .|.+|||+.   .||.+=.|+.+- +|++..+= +...+.++-.+.|-++||++.|+                       
T Consensus        27 ~I~slA~s~kS~~lAvsRt~g~IE-iwN~~~~w~~~~vi~g~~drsIE~L~W~e~~R-----------------------   82 (691)
T KOG2048|consen   27 EIVSLAYSHKSNQLAVSRTDGNIE-IWNLSNNWFLEPVIHGPEDRSIESLAWAEGGR-----------------------   82 (691)
T ss_pred             ceEEEEEeccCCceeeeccCCcEE-EEccCCCceeeEEEecCCCCceeeEEEccCCe-----------------------
Confidence            588999987   799999999999 99998765 44455545567889999986543                       


Q ss_pred             eecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeec
Q 006825          417 TDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLE  496 (630)
Q Consensus       417 ~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~  496 (630)
                             |++.+.+|+|.-||+.+.+     ....+..-.++||+|+.+|.+..|+.|++||.+...++..+......  
T Consensus        83 -------LFS~g~sg~i~EwDl~~lk-----~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r--  148 (691)
T KOG2048|consen   83 -------LFSSGLSGSITEWDLHTLK-----QKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKR--  148 (691)
T ss_pred             -------EEeecCCceEEEEecccCc-----eeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEe--
Confidence                   4667778899999997664     34566777889999999999999999999998888888777655442  


Q ss_pred             ccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeC-CCCceE-------Eec-cCC
Q 006825          497 KQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPIC-------SFQ-GHL  567 (630)
Q Consensus       497 ~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~-------tL~-GHs  567 (630)
                       .+....+.|.++.|+|++..++.|+.||.|                       ++|+. ++..++       .+. +-.
T Consensus       149 -~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~I-----------------------riwd~~~~~t~~~~~~~~d~l~k~~~  204 (691)
T KOG2048|consen  149 -SLMRQKSRVLSLSWNPTGTKIAGGSIDGVI-----------------------RIWDVKSGQTLHIITMQLDRLSKREP  204 (691)
T ss_pred             -ecccccceEEEEEecCCccEEEecccCceE-----------------------EEEEcCCCceEEEeeecccccccCCc
Confidence             245557899999999999999999999999                       56665 333333       111 122


Q ss_pred             CCEEEEEEcCCCeEEEEECCCcEEEEeCCCCcEEEEEe-cCCceEEEE-cCCCcEEEEec
Q 006825          568 DDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYDISLV-DRLMLRFAYGA  625 (630)
Q Consensus       568 ~~V~sLafSPd~~LaSgS~DgtVrIWDl~tg~~l~t~~-H~~~V~sVa-s~~~~~lAsgs  625 (630)
                      --|++|.|-.++.|++|-.-|+|++||...|++++.+. |..-|.|++ .++..++.+++
T Consensus       205 ~iVWSv~~Lrd~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~vfsaG  264 (691)
T KOG2048|consen  205 TIVWSVLFLRDSTIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRVFSAG  264 (691)
T ss_pred             eEEEEEEEeecCcEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeEEEcc
Confidence            34788888877999999999999999999999999999 999999999 66655555554

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.60  E-value=1.1e-14  Score=155.78  Aligned_cols=224  Identities=16%  Similarity=0.126  Sum_probs=179.0

Q ss_pred             ECCCCcEEEEeeecCCCceeEEEEcCCCceEeeecceeeecCccceeEEEeec---ceEeecCCCccEecccCCCCceeE
Q 006825          297 NLDNGKEFVVNEIQEDGTWKKVKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKS  373 (630)
Q Consensus       297 ~LddG~~~~v~e~~~dg~~~~l~dv~TG~~lt~eef~~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~  373 (630)
                      -+.||+.++|..+   ..+..+||+++-.+-.-   ..|.--.+.-++|+.+|   ...+...|+.|+ |||+.+...++
T Consensus       473 L~pdgrtLivGGe---astlsiWDLAapTprik---aeltssapaCyALa~spDakvcFsccsdGnI~-vwDLhnq~~Vr  545 (705)
T KOG0639|consen  473 LLPDGRTLIVGGE---ASTLSIWDLAAPTPRIK---AELTSSAPACYALAISPDAKVCFSCCSDGNIA-VWDLHNQTLVR  545 (705)
T ss_pred             ecCCCceEEeccc---cceeeeeeccCCCcchh---hhcCCcchhhhhhhcCCccceeeeeccCCcEE-EEEcccceeee
Confidence            3689999988653   55678999986443311   23444456778899999   677889999999 99999999999


Q ss_pred             EecCCccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEec
Q 006825          374 KKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQ  453 (630)
Q Consensus       374 ~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~  453 (630)
                      .|+ ||.+.+.|+..++||..|                             |+|+-|.+||.||+..+.        .+.
T Consensus       546 qfq-GhtDGascIdis~dGtkl-----------------------------WTGGlDntvRcWDlregr--------qlq  587 (705)
T KOG0639|consen  546 QFQ-GHTDGASCIDISKDGTKL-----------------------------WTGGLDNTVRCWDLREGR--------QLQ  587 (705)
T ss_pred             ccc-CCCCCceeEEecCCCcee-----------------------------ecCCCccceeehhhhhhh--------hhh
Confidence            999 999999999999988655                             899999999999997653        234


Q ss_pred             cc--CcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeec
Q 006825          454 AH--NGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKR  531 (630)
Q Consensus       454 gH--t~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~  531 (630)
                      .|  +..|.++-+.|.+.+||.|-+.+.+.|-.....+ ..+     +..|...|.++.|.+.|+++++.+.|..+    
T Consensus       588 qhdF~SQIfSLg~cP~~dWlavGMens~vevlh~skp~-kyq-----lhlheScVLSlKFa~cGkwfvStGkDnlL----  657 (705)
T KOG0639|consen  588 QHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPE-KYQ-----LHLHESCVLSLKFAYCGKWFVSTGKDNLL----  657 (705)
T ss_pred             hhhhhhhheecccCCCccceeeecccCcEEEEecCCcc-cee-----ecccccEEEEEEecccCceeeecCchhhh----
Confidence            44  4679999999999999999999988887775433 333     36788999999999999999999999988    


Q ss_pred             ccccccccccccCccccccEEEeC-CCCceEEeccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeC
Q 006825          532 RGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHL  595 (630)
Q Consensus       532 ~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl  595 (630)
                                         ..|.. -|..+...+ ....|+++..+-| +|++|||.|+...+|.+
T Consensus       658 -------------------nawrtPyGasiFqsk-E~SsVlsCDIS~ddkyIVTGSGdkkATVYeV  703 (705)
T KOG0639|consen  658 -------------------NAWRTPYGASIFQSK-ESSSVLSCDISFDDKYIVTGSGDKKATVYEV  703 (705)
T ss_pred             -------------------hhccCccccceeecc-ccCcceeeeeccCceEEEecCCCcceEEEEE
Confidence                               44544 455554444 4567999999988 99999999998888865

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.59  E-value=8.9e-15  Score=168.94  Aligned_cols=209  Identities=15%  Similarity=0.190  Sum_probs=160.1

Q ss_pred             ceEeecCCCccEecccCCC---Cc---eeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCe
Q 006825          350 NVEEGNKDSFDLNNNGSSG---GG---MKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDV  423 (630)
Q Consensus       350 ~laSgS~D~tvr~vWD~~t---G~---~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~  423 (630)
                      .+|.|..||+|- +||...   +.   .+.++. .|.+.|+.+-|.+.+.                            ..
T Consensus        82 lIaGG~edG~I~-ly~p~~~~~~~~~~~la~~~-~h~G~V~gLDfN~~q~----------------------------nl  131 (1049)
T KOG0307|consen   82 LIAGGLEDGNIV-LYDPASIIANASEEVLATKS-KHTGPVLGLDFNPFQG----------------------------NL  131 (1049)
T ss_pred             eeeccccCCceE-EecchhhccCcchHHHhhhc-ccCCceeeeeccccCC----------------------------ce
Confidence            488999999999 999865   22   344555 7999999888888532                            23


Q ss_pred             EEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEcc-CCCEEEEEeCCCcEEEEECcCCceeeeeecccccCc
Q 006825          424 SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSL-DGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGH  502 (630)
Q Consensus       424 l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSp-DG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh  502 (630)
                      +++|..+|.|.|||+...+......   -..-.+.|.+|+|+. ....||+++.+|++-|||++..+.+-.+-   ..+-
T Consensus       132 LASGa~~geI~iWDlnn~~tP~~~~---~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls---~~~~  205 (1049)
T KOG0307|consen  132 LASGADDGEILIWDLNKPETPFTPG---SQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLS---DTPG  205 (1049)
T ss_pred             eeccCCCCcEEEeccCCcCCCCCCC---CCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccc---cCCC
Confidence            5778888999999997643211110   123467899999988 46689999999999999999876665541   1122


Q ss_pred             ccceEEEEECCCC-CEEEEeeCCCeeeeecccccccccccccCccccccEEEeC--CCCceEEeccCCCCEEEEEEcCC-
Q 006825          503 LNMLLLANGSPEP-TSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL--SDKPICSFQGHLDDVLDLSWSKS-  578 (630)
Q Consensus       503 ~~~V~svafSpdg-~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl--sgk~l~tL~GHs~~V~sLafSPd-  578 (630)
                      ...+..++|+|+. ..+++++.|...                 ..+   .+||+  ...++++|++|...|.+|.|.+. 
T Consensus       206 ~~~~S~l~WhP~~aTql~~As~dd~~-----------------Pvi---qlWDlR~assP~k~~~~H~~GilslsWc~~D  265 (1049)
T KOG0307|consen  206 RMHCSVLAWHPDHATQLLVASGDDSA-----------------PVI---QLWDLRFASSPLKILEGHQRGILSLSWCPQD  265 (1049)
T ss_pred             ccceeeeeeCCCCceeeeeecCCCCC-----------------cee---EeecccccCCchhhhcccccceeeeccCCCC
Confidence            2457899999994 456666655532                 011   78887  56889999999999999999985 


Q ss_pred             -CeEEEEECCCcEEEEeCCCCcEEEEEe-cCCceEEEE
Q 006825          579 -QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYDISLV  614 (630)
Q Consensus       579 -~~LaSgS~DgtVrIWDl~tg~~l~t~~-H~~~V~sVa  614 (630)
                       .+|+|++.|+.|.+|+..+++.+..|. ..+++..|.
T Consensus       266 ~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~  303 (1049)
T KOG0307|consen  266 PRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQ  303 (1049)
T ss_pred             chhhhcccCCCCeeEecCCCceEeeecCCCCcceeeee
Confidence             899999999999999999999999998 889998888

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.59  E-value=6.4e-14  Score=153.54  Aligned_cols=259  Identities=15%  Similarity=0.099  Sum_probs=200.7

Q ss_pred             EEEEC---CCCcEEEEeeecCCCceeEEEEcCCCceEeeecceeeecCccceeEEEeec---ceEeecCCCccEecccCC
Q 006825          294 LIKNL---DNGKEFVVNEIQEDGTWKKVKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSS  367 (630)
Q Consensus       294 ~I~~L---ddG~~~~v~e~~~dg~~~~l~dv~TG~~lt~eef~~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~  367 (630)
                      .|.|+   .||.++++...    ....+.|+..|.++     ++|.||.+.|.++|++.   ..|||+.|+.|. +|.. 
T Consensus        14 ci~d~afkPDGsqL~lAAg----~rlliyD~ndG~ll-----qtLKgHKDtVycVAys~dGkrFASG~aDK~VI-~W~~-   82 (1081)
T KOG1538|consen   14 CINDIAFKPDGTQLILAAG----SRLLVYDTSDGTLL-----QPLKGHKDTVYCVAYAKDGKRFASGSADKSVI-IWTS-   82 (1081)
T ss_pred             chheeEECCCCceEEEecC----CEEEEEeCCCcccc-----cccccccceEEEEEEccCCceeccCCCceeEE-Eecc-
Confidence            44554   79999998754    33679999999999     99999999999999997   799999999999 9954 


Q ss_pred             CCceeEEecCCccCCEEEEEEcCCCCeEEeecCCC------CCccc--cCCcceEEEeecCCCe--EEEecCCcEEEEEe
Q 006825          368 GGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDER------DTSSE--KGGRRSSSATDDSQDV--SFHGQERVRVRQYG  437 (630)
Q Consensus       368 tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~------dt~s~--~gh~~~Vsa~~~s~d~--l~Sgs~Dg~VriWd  437 (630)
                        +....++..|...|.|+.|.|-.+.|++.+-..      +....  ..-...+.+-++..|+  ++-|-.+|+|-+-+
T Consensus        83 --klEG~LkYSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRN  160 (1081)
T KOG1538|consen   83 --KLEGILKYSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRN  160 (1081)
T ss_pred             --cccceeeeccCCeeeEeecCchHHHhhhcchhhccccChhhhhHHhhhhheeEEEeeecCCCcEEEEeccCceEEeec
Confidence              556677779999999999999989998876433      11112  2223456677888888  88899999999987


Q ss_pred             CCCCcccceeeeeEecccCcCEEEEEEccCC-----CEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEEC
Q 006825          438 KSCKDLTALYKCQEIQAHNGSIWSIKFSLDG-----RYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGS  512 (630)
Q Consensus       438 ~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG-----~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafS  512 (630)
                      +...+-   ..++.--|...+|++|+|+|..     ..++...+..|+-.+.+. |+.+..-     ..-.-...++.+.
T Consensus       161 k~gEek---~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls-G~~Igk~-----r~L~FdP~CisYf  231 (1081)
T KOG1538|consen  161 KNGEEK---VKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS-GKQIGKD-----RALNFDPCCISYF  231 (1081)
T ss_pred             CCCCcc---eEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEec-ceeeccc-----ccCCCCchhheec
Confidence            654331   1234445788999999999953     367777777888877774 4433321     1111223478899


Q ss_pred             CCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeCCCCceEEeccCCCCEEEEEEcCC-CeEEEEECCCcEE
Q 006825          513 PEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVR  591 (630)
Q Consensus       513 pdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL~GHs~~V~sLafSPd-~~LaSgS~DgtVr  591 (630)
                      +.|.+++.|+.|+.+                       .+|.-.|-.+.++-....+|+.++..|+ ++++-|+.||||-
T Consensus       232 ~NGEy~LiGGsdk~L-----------------------~~fTR~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiA  288 (1081)
T KOG1538|consen  232 TNGEYILLGGSDKQL-----------------------SLFTRDGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIA  288 (1081)
T ss_pred             cCCcEEEEccCCCce-----------------------EEEeecCeEEeeccccceeEEEEEEccCCceEEEEEccCeee
Confidence            999999999999998                       7777777788888777789999999999 9999999999999


Q ss_pred             EEeCCC
Q 006825          592 LWHLSS  597 (630)
Q Consensus       592 IWDl~t  597 (630)
                      -|++..
T Consensus       289 CyNl~f  294 (1081)
T KOG1538|consen  289 CYNLIF  294 (1081)
T ss_pred             hhhhHH
Confidence            998753

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.59  E-value=4e-14  Score=151.27  Aligned_cols=208  Identities=15%  Similarity=0.066  Sum_probs=166.3

Q ss_pred             ceeEEEeecceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCcc-----------ccC
Q 006825          341 IVQELMRRQNVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSS-----------EKG  409 (630)
Q Consensus       341 ~V~~Lafs~~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s-----------~~g  409 (630)
                      .|.+..|+-++++|+..++|+ |||+....+.+.++ +|...|.+|-+.-...|||+++..+|...           +..
T Consensus        84 Cv~~~s~S~y~~sgG~~~~Vk-iwdl~~kl~hr~lk-dh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~  161 (673)
T KOG4378|consen   84 CVACASQSLYEISGGQSGCVK-IWDLRAKLIHRFLK-DHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTI  161 (673)
T ss_pred             HHhhhhcceeeeccCcCceee-ehhhHHHHHhhhcc-CCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceec
Confidence            355566667899999999999 99999766777777 99999999999998899999998874211           333


Q ss_pred             C-cceEEEeecCCCe---EEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEcc-CCCEEEEEeCCCcEEEEE
Q 006825          410 G-RRSSSATDDSQDV---SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSL-DGRYLASAGEDCVIHVWQ  484 (630)
Q Consensus       410 h-~~~Vsa~~~s~d~---l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSp-DG~~LASgS~DgtIrVWD  484 (630)
                      . ...|.-+.+++.-   |.+++++|.|.+||+.....    ..+-.+.|..+...|+|+| +..+|+|.|.|+.|.+||
T Consensus       162 ~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp----~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD  237 (673)
T KOG4378|consen  162 DSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSP----IFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYD  237 (673)
T ss_pred             CCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCc----ccchhhhccCCcCcceecCCccceEEEecccceEEEee
Confidence            3 2234466666544   88999999999999987643    2244688999999999999 667899999999999999


Q ss_pred             CcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeC--CCCceEE
Q 006825          485 VVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL--SDKPICS  562 (630)
Q Consensus       485 l~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl--sgk~l~t  562 (630)
                      +........+      ....+...++|.++|.+|+.|...|.|                       ..+|+  ...++.+
T Consensus       238 ~~s~~s~~~l------~y~~Plstvaf~~~G~~L~aG~s~G~~-----------------------i~YD~R~~k~Pv~v  288 (673)
T KOG4378|consen  238 IRSQASTDRL------TYSHPLSTVAFSECGTYLCAGNSKGEL-----------------------IAYDMRSTKAPVAV  288 (673)
T ss_pred             ccccccccee------eecCCcceeeecCCceEEEeecCCceE-----------------------EEEecccCCCCceE
Confidence            9866555543      344678899999999999999999988                       67777  5578999


Q ss_pred             eccCCCCEEEEEEcCCCeEEE
Q 006825          563 FQGHLDDVLDLSWSKSQHLLS  583 (630)
Q Consensus       563 L~GHs~~V~sLafSPd~~LaS  583 (630)
                      +..|...|++|+|-|...+++
T Consensus       289 ~sah~~sVt~vafq~s~tvlt  309 (673)
T KOG4378|consen  289 RSAHDASVTRVAFQPSPTVLT  309 (673)
T ss_pred             eeecccceeEEEeeecceeee
Confidence            999999999999977644443

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.58  E-value=8.9e-14  Score=146.05  Aligned_cols=252  Identities=14%  Similarity=0.139  Sum_probs=176.5

Q ss_pred             cceeEEEeec----ceEeecCCCccEecccCCCCce---------eEEecCCccCCEEEEEEcCCCCeEEeecCCCCCcc
Q 006825          340 PIVQELMRRQ----NVEEGNKDSFDLNNNGSSGGGM---------KSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSS  406 (630)
Q Consensus       340 ~~V~~Lafs~----~laSgS~D~tvr~vWD~~tG~~---------~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s  406 (630)
                      ..|..+-|.+    .+|||+.|..|| +|-+..+..         +..|. +|.+.|+.|-|+|+|.+||+|        
T Consensus        14 ~pv~s~dfq~n~~~~laT~G~D~~ir-iW~v~r~~~~~~~~~V~y~s~Ls-~H~~aVN~vRf~p~gelLASg--------   83 (434)
T KOG1009|consen   14 EPVYSVDFQKNSLNKLATAGGDKDIR-IWKVNRSEPGGGDMKVEYLSSLS-RHTRAVNVVRFSPDGELLASG--------   83 (434)
T ss_pred             CceEEEEeccCcccceecccCcccee-eeeeeecCCCCCceeEEEeeccc-CCcceeEEEEEcCCcCeeeec--------
Confidence            3466666765    689999999999 998765432         22444 788888888888888777554        


Q ss_pred             ccCCcceEEEeecCCCeEEEecCCcEEEEEeCC--------CC-c--ccceeeeeEecccCcCEEEEEEccCCCEEEEEe
Q 006825          407 EKGGRRSSSATDDSQDVSFHGQERVRVRQYGKS--------CK-D--LTALYKCQEIQAHNGSIWSIKFSLDGRYLASAG  475 (630)
Q Consensus       407 ~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~--------~~-e--l~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS  475 (630)
                                           +.++.|.+|...        +. +  .........+.+|...|+.++|+||+.+|++++
T Consensus        84 ---------------------~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s  142 (434)
T KOG1009|consen   84 ---------------------GDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGS  142 (434)
T ss_pred             ---------------------CCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeee
Confidence                                 455567777654        20 0  111234567889999999999999999999999


Q ss_pred             CCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeeccccc-----cc-------------
Q 006825          476 EDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRS-----IN-------------  537 (630)
Q Consensus       476 ~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~-----~~-------------  537 (630)
                      .|.++++||+..|.....+     .+|...+..++|.|..+++++-+.|.+.+.......     ..             
T Consensus       143 ~dns~~l~Dv~~G~l~~~~-----~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e  217 (434)
T KOG1009|consen  143 VDNSVRLWDVHAGQLLAIL-----DDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNERE  217 (434)
T ss_pred             ccceEEEEEeccceeEeec-----cccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCC
Confidence            9999999999999988774     899999999999999999999888874332221110     00             


Q ss_pred             -----------------ccccccCccc--cccEEEeC----------------CCCceEEeccCCCCEEEEEEcCC----
Q 006825          538 -----------------RKSLSLDHMV--VPETVFAL----------------SDKPICSFQGHLDDVLDLSWSKS----  578 (630)
Q Consensus       538 -----------------~~s~s~d~~i--~~~~Vwdl----------------sgk~l~tL~GHs~~V~sLafSPd----  578 (630)
                                       +.++++++..  .|..++..                ..+++..+.+....+..+.|+|-    
T Consensus       218 ~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~el  297 (434)
T KOG1009|consen  218 GKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYEL  297 (434)
T ss_pred             cceeeeeecCchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEe
Confidence                             0122333322  12222222                12455666666777777777651    


Q ss_pred             --------------CeEEEEECCCcEEEEeCCCCcEEEEEe--cCCceEEEE-cCCCcEEEEecce
Q 006825          579 --------------QHLLSSSMDKTVRLWHLSSKTCLKIFS--HSDYDISLV-DRLMLRFAYGAFL  627 (630)
Q Consensus       579 --------------~~LaSgS~DgtVrIWDl~tg~~l~t~~--H~~~V~sVa-s~~~~~lAsgs~~  627 (630)
                                    +++..-..-+.|.|||.++-.++....  |-..++.++ ++++..++..+.+
T Consensus       298 rp~~~~~~~~~lpyrlvfaiAt~~svyvydtq~~~P~~~v~nihy~~iTDiaws~dg~~l~vSS~D  363 (434)
T KOG1009|consen  298 RPLSSEKFLFVLPYRLVFAIATKNSVYVYDTQTLEPLAVVDNIHYSAITDIAWSDDGSVLLVSSTD  363 (434)
T ss_pred             ccccccccccccccceEEEEeecceEEEeccccccceEEEeeeeeeeecceeecCCCcEEEEeccC
Confidence                          122233344579999999999888886  999999999 8887777776654

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.57  E-value=2.1e-13  Score=139.53  Aligned_cols=263  Identities=15%  Similarity=0.169  Sum_probs=184.5

Q ss_pred             eeecCCCCcccCCCccccccCCCCCcccccccEEEEECCCCcEEEEeeecCCCceeEEEEcCCCceEeeecceeeecCcc
Q 006825          261 MSINGNGNYIGNSGEVVEDFDGNGTAGVAEQGCLIKNLDNGKEFVVNEIQEDGTWKKVKEVGTGRQLTIEEFEMCVGHSP  340 (630)
Q Consensus       261 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~LddG~~~~v~e~~~dg~~~~l~dv~TG~~lt~eef~~l~GHs~  340 (630)
                      ..||+.|.||              |.+=.++.+.||++++-.                       .-     .+|.+|..
T Consensus        29 ~~Fs~~G~~l--------------AvGc~nG~vvI~D~~T~~-----------------------ia-----r~lsaH~~   66 (405)
T KOG1273|consen   29 CQFSRWGDYL--------------AVGCANGRVVIYDFDTFR-----------------------IA-----RMLSAHVR   66 (405)
T ss_pred             EEeccCccee--------------eeeccCCcEEEEEccccc-----------------------hh-----hhhhcccc
Confidence            5889999999              666666777777765432                       11     45688999


Q ss_pred             ceeEEEeec---ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCC--eEEeecCCC-------C-Ccc-
Q 006825          341 IVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGH--KERRSSDER-------D-TSS-  406 (630)
Q Consensus       341 ~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~--~lasgS~D~-------d-t~s-  406 (630)
                      +|++|++++   .|+|+|.|..+. +||+..|.++++++  ....|..+.|.|...  .+|+-=...       + +.. 
T Consensus        67 pi~sl~WS~dgr~LltsS~D~si~-lwDl~~gs~l~rir--f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~  143 (405)
T KOG1273|consen   67 PITSLCWSRDGRKLLTSSRDWSIK-LWDLLKGSPLKRIR--FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSV  143 (405)
T ss_pred             ceeEEEecCCCCEeeeecCCceeE-EEeccCCCceeEEE--ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceee
Confidence            999999999   899999999999 99999999998876  678888888888433  233311111       0 000 


Q ss_pred             -----ccCCcceEEEeecCCCe--EEEecCCcEEEEEeCCCCcccceeeeeEecccC-cCEEEEEEccCCCEEEEEeCCC
Q 006825          407 -----EKGGRRSSSATDDSQDV--SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHN-GSIWSIKFSLDGRYLASAGEDC  478 (630)
Q Consensus       407 -----~~gh~~~Vsa~~~s~d~--l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt-~~V~sVaFSpDG~~LASgS~Dg  478 (630)
                           ...-.....+..|...+  +++|...|++.+|+..+-+     ++..++--+ ..|..|-|+..|++|+.-..|+
T Consensus       144 Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e-----~vas~rits~~~IK~I~~s~~g~~liiNtsDR  218 (405)
T KOG1273|consen  144 LPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLE-----CVASFRITSVQAIKQIIVSRKGRFLIINTSDR  218 (405)
T ss_pred             ccCCCccccccccccccccCCCCEEEEecCcceEEEEecchhe-----eeeeeeechheeeeEEEEeccCcEEEEecCCc
Confidence                 00001111112344444  9999999999999997765     455555444 7899999999999999999999


Q ss_pred             cEEEEECcCCcee---eeee---cccccCcccceEEEEECCCCCEEEEeeCCCe-eeeecccccccccccccCccccccE
Q 006825          479 VIHVWQVVESERK---GELL---EKQEDGHLNMLLLANGSPEPTSLSPKHLDNH-LEKKRRGRSINRKSLSLDHMVVPET  551 (630)
Q Consensus       479 tIrVWDl~tg~~~---~~l~---~~~~~gh~~~V~svafSpdg~~lasgs~Dg~-I~i~~~~~~~~~~s~s~d~~i~~~~  551 (630)
                      +||.+++..-...   .++.   .....-....-.+++|+.+|.++..++.-.+ +                       .
T Consensus       219 vIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaL-----------------------Y  275 (405)
T KOG1273|consen  219 VIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHAL-----------------------Y  275 (405)
T ss_pred             eEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeE-----------------------E
Confidence            9999998632111   1110   0000001123357899999999988763332 3                       7


Q ss_pred             EEeC-CCCceEEeccCC-CCEEEEEEcCC-CeEEEEECCCcEEEEeCCC
Q 006825          552 VFAL-SDKPICSFQGHL-DDVLDLSWSKS-QHLLSSSMDKTVRLWHLSS  597 (630)
Q Consensus       552 Vwdl-sgk~l~tL~GHs-~~V~sLafSPd-~~LaSgS~DgtVrIWDl~t  597 (630)
                      ||.- .|.+++.|.|.. ....++.|+|- ..+++- .-|+|+||....
T Consensus       276 IWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si-~sg~v~iw~~~~  323 (405)
T KOG1273|consen  276 IWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASI-ASGVVYIWAVVQ  323 (405)
T ss_pred             EEecCCcceeeeecCCchhheeecccccceeeeeec-cCCceEEEEeec
Confidence            8887 799999999988 56789999998 667766 779999998643

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.56  E-value=2.3e-13  Score=137.84  Aligned_cols=237  Identities=18%  Similarity=0.137  Sum_probs=173.1

Q ss_pred             eeeecCccceeEEEeec----ceEeecCC---C---ccEecccCCC---------CceeEEecCCccCCEEEEEEcCCCC
Q 006825          333 EMCVGHSPIVQELMRRQ----NVEEGNKD---S---FDLNNNGSSG---------GGMKSKKKGSWFKSIRTVASSVTGH  393 (630)
Q Consensus       333 ~~l~GHs~~V~~Lafs~----~laSgS~D---~---tvr~vWD~~t---------G~~~~~lk~gH~~~V~sVAfSpdG~  393 (630)
                      +.|..|.+-|+.|+-+|    .|++.-+|   .   +-..||.+..         -+++..|...|.+.|.||-|-|++.
T Consensus        57 kvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~  136 (370)
T KOG1007|consen   57 KVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSD  136 (370)
T ss_pred             hhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCC
Confidence            45677888999999888    45443321   1   2223786532         1233344435667889999999887


Q ss_pred             eEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcc-cceeeeeEecccCcCEEEEEEcc--CCCE
Q 006825          394 KERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDL-TALYKCQEIQAHNGSIWSIKFSL--DGRY  470 (630)
Q Consensus       394 ~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el-~~~~~v~tL~gHt~~V~sVaFSp--DG~~  470 (630)
                      ++++-                              .|..|.+|++....- ........-.+|....++-+|+|  ||+.
T Consensus       137 klasm------------------------------~dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnq  186 (370)
T KOG1007|consen  137 KLASM------------------------------DDNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQ  186 (370)
T ss_pred             eeEEe------------------------------ccCceEEEEcccCcchheeecccccccccceecccccCCCCccce
Confidence            77532                              255689998865432 11111111234778889999998  8999


Q ss_pred             EEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCC-CCEEEEeeCCCeeeeecccccccccccccCccccc
Q 006825          471 LASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPE-PTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVP  549 (630)
Q Consensus       471 LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpd-g~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~  549 (630)
                      +++.+ |++++.||+++..+...+    ...|...|..+.|.|. ..+|+++++|+.|                      
T Consensus       187 v~tt~-d~tl~~~D~RT~~~~~sI----~dAHgq~vrdlDfNpnkq~~lvt~gDdgyv----------------------  239 (370)
T KOG1007|consen  187 VATTS-DSTLQFWDLRTMKKNNSI----EDAHGQRVRDLDFNPNKQHILVTCGDDGYV----------------------  239 (370)
T ss_pred             EEEeC-CCcEEEEEccchhhhcch----hhhhcceeeeccCCCCceEEEEEcCCCccE----------------------
Confidence            99866 799999999987776665    5789999999999998 5678889999999                      


Q ss_pred             cEEEeC--CCCceEEeccCCCCEEEEEEcCC--CeEEEEECCCcEEEEeCCCC---------------------------
Q 006825          550 ETVFAL--SDKPICSFQGHLDDVLDLSWSKS--QHLLSSSMDKTVRLWHLSSK---------------------------  598 (630)
Q Consensus       550 ~~Vwdl--sgk~l~tL~GHs~~V~sLafSPd--~~LaSgS~DgtVrIWDl~tg---------------------------  598 (630)
                       ++|+.  +..++.++.+|+-.|++|.|+|-  ++|+||+.|..|.||.+.+-                           
T Consensus       240 -riWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL  318 (370)
T KOG1007|consen  240 -RIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPL  318 (370)
T ss_pred             -EEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccc
Confidence             77776  66899999999999999999996  89999999999999976321                           


Q ss_pred             --cEEEEEe-cCCceEEEE--cCCCcEEEEecce
Q 006825          599 --TCLKIFS-HSDYDISLV--DRLMLRFAYGAFL  627 (630)
Q Consensus       599 --~~l~t~~-H~~~V~sVa--s~~~~~lAsgs~~  627 (630)
                        ..+.+|. |.+.|++++  +.+.-+||+-+++
T Consensus       319 ~dg~l~tydehEDSVY~~aWSsadPWiFASLSYD  352 (370)
T KOG1007|consen  319 QDGQLETYDEHEDSVYALAWSSADPWIFASLSYD  352 (370)
T ss_pred             cccccccccccccceEEEeeccCCCeeEEEeccC
Confidence              1345676 999999999  5555566665543

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.55  E-value=2e-13  Score=149.82  Aligned_cols=247  Identities=15%  Similarity=0.123  Sum_probs=183.9

Q ss_pred             ceeEEEeec---ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCC----Ccc-----cc
Q 006825          341 IVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERD----TSS-----EK  408 (630)
Q Consensus       341 ~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~d----t~s-----~~  408 (630)
                      .|..++|.|   .|+-+.. ..+- ++|++.|..+.++| ||...|++||++.||+++++|+.|+-    +.+     ..
T Consensus        14 ci~d~afkPDGsqL~lAAg-~rll-iyD~ndG~llqtLK-gHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~LkY   90 (1081)
T KOG1538|consen   14 CINDIAFKPDGTQLILAAG-SRLL-VYDTSDGTLLQPLK-GHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGILKY   90 (1081)
T ss_pred             chheeEECCCCceEEEecC-CEEE-EEeCCCcccccccc-cccceEEEEEEccCCceeccCCCceeEEEecccccceeee
Confidence            788999999   3333333 4566 89999999999999 99999999999999999999999982    122     44


Q ss_pred             CCcceEEEeecCCCe--EEEecCCcEEEEEeCCCCcccceeeeeEeccc--CcCEEEEEEccCCCEEEEEeCCCcEEEEE
Q 006825          409 GGRRSSSATDDSQDV--SFHGQERVRVRQYGKSCKDLTALYKCQEIQAH--NGSIWSIKFSLDGRYLASAGEDCVIHVWQ  484 (630)
Q Consensus       409 gh~~~Vsa~~~s~d~--l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gH--t~~V~sVaFSpDG~~LASgS~DgtIrVWD  484 (630)
                      .|...|.|+.|.+..  +++.+- ...-+|....+..         ..|  ...|.+.+|..||++|+-|-.||||.|-+
T Consensus        91 SH~D~IQCMsFNP~~h~LasCsL-sdFglWS~~qK~V---------~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRN  160 (1081)
T KOG1538|consen   91 SHNDAIQCMSFNPITHQLASCSL-SDFGLWSPEQKSV---------SKHKSSSRIICCSWTNDGQYLALGMFNGTISIRN  160 (1081)
T ss_pred             ccCCeeeEeecCchHHHhhhcch-hhccccChhhhhH---------HhhhhheeEEEeeecCCCcEEEEeccCceEEeec
Confidence            588999999999877  555542 2345676654432         223  34578889999999999999999999987


Q ss_pred             CcCCceeeeeecccccCcccceEEEEECCCCC-----EEEEeeCCCeeeeecccccccccccccCccccccEEEeCCCCc
Q 006825          485 VVESERKGELLEKQEDGHLNMLLLANGSPEPT-----SLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKP  559 (630)
Q Consensus       485 l~tg~~~~~l~~~~~~gh~~~V~svafSpdg~-----~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~  559 (630)
                      -...+.+ .+  ....|...+|++++|+|...     +++......++                       ..+.++|+.
T Consensus       161 k~gEek~-~I--~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTL-----------------------SFy~LsG~~  214 (1081)
T KOG1538|consen  161 KNGEEKV-KI--ERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTL-----------------------SFYQLSGKQ  214 (1081)
T ss_pred             CCCCcce-EE--eCCCCCCCCceEEEecCCCCCCccceEEEEecccee-----------------------EEEEeccee
Confidence            6433322 21  11356778999999999732     23333333333                       556667776


Q ss_pred             eEEeccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCCCcEEEEEe-cCCceEEEE-cCCCcEEEEecce
Q 006825          560 ICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYDISLV-DRLMLRFAYGAFL  627 (630)
Q Consensus       560 l~tL~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg~~l~t~~-H~~~V~sVa-s~~~~~lAsgs~~  627 (630)
                      +..-..-.-.-.|+.+.++ .+++.|+.|+.++++- +.|-.+.++. ...+||.|+ .|++.+++.|-.+
T Consensus       215 Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fT-R~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqD  284 (1081)
T KOG1538|consen  215 IGKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFT-RDGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQD  284 (1081)
T ss_pred             ecccccCCCCchhheeccCCcEEEEccCCCceEEEe-ecCeEEeeccccceeEEEEEEccCCceEEEEEcc
Confidence            6544444445678999999 9999999999999994 6788899998 889999999 9999999888543

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.53  E-value=1.3e-13  Score=141.62  Aligned_cols=207  Identities=16%  Similarity=0.175  Sum_probs=152.9

Q ss_pred             ecceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEe
Q 006825          348 RQNVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHG  427 (630)
Q Consensus       348 s~~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sg  427 (630)
                      .|+||.|+.-+.|| |-|+.++++...+. ||...|+.+.|.|+-                            +..++++
T Consensus       105 ~p~la~~G~~GvIr-Vid~~~~~~~~~~~-ghG~sINeik~~p~~----------------------------~qlvls~  154 (385)
T KOG1034|consen  105 NPFLAAGGYLGVIR-VIDVVSGQCSKNYR-GHGGSINEIKFHPDR----------------------------PQLVLSA  154 (385)
T ss_pred             CeeEEeecceeEEE-EEecchhhhcccee-ccCccchhhhcCCCC----------------------------CcEEEEe
Confidence            35688888999999 99999999999999 999999999999963                            3345788


Q ss_pred             cCCcEEEEEeCCCCcccceeeeeEe---cccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeee----------
Q 006825          428 QERVRVRQYGKSCKDLTALYKCQEI---QAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGEL----------  494 (630)
Q Consensus       428 s~Dg~VriWd~~~~el~~~~~v~tL---~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l----------  494 (630)
                      +.|-.||+|++++..     |+..|   .||.+.|.++.|+++|.+|+|+|.|.+|++|++...+....+          
T Consensus       155 SkD~svRlwnI~~~~-----Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~  229 (385)
T KOG1034|consen  155 SKDHSVRLWNIQTDV-----CVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNK  229 (385)
T ss_pred             cCCceEEEEeccCCe-----EEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCC
Confidence            888899999998764     45444   789999999999999999999999999999999743221111          


Q ss_pred             ------------ecc-cccCcccceEEEEECCCCCEEEEeeCCCeeeeecccc-cccccccccCccccccEEEeCCCCce
Q 006825          495 ------------LEK-QEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGR-SINRKSLSLDHMVVPETVFALSDKPI  560 (630)
Q Consensus       495 ------------~~~-~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~-~~~~~s~s~d~~i~~~~Vwdlsgk~l  560 (630)
                                  +.. ...-|...|-++.|-  |.++++-+-++.|..|..++ ......+.+..         .....+
T Consensus       230 t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~e---------s~~Ti~  298 (385)
T KOG1034|consen  230 TTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPE---------SATTIL  298 (385)
T ss_pred             ccCcCCccccccccccccccccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCc---------cceeee
Confidence                        000 123455566666664  57888888888998888865 22211110000         011344


Q ss_pred             EEeccCCCCEEEEEEcCC---CeEEEEECCCcEEEEeCCCCcE
Q 006825          561 CSFQGHLDDVLDLSWSKS---QHLLSSSMDKTVRLWHLSSKTC  600 (630)
Q Consensus       561 ~tL~GHs~~V~sLafSPd---~~LaSgS~DgtVrIWDl~tg~~  600 (630)
                      .++.-....|+-+.|+-|   ..||.|..-|.|.+||++....
T Consensus       299 ~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep  341 (385)
T KOG1034|consen  299 GEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEP  341 (385)
T ss_pred             eEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCC
Confidence            556656667888887766   7899999999999999987655

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.53  E-value=2e-12  Score=132.21  Aligned_cols=253  Identities=14%  Similarity=0.088  Sum_probs=192.4

Q ss_pred             EEECCCCcEEEEeeecCCCceeEEEEcCCCceEeeecceeeecCccceeEEEeec--ceEeecCCCccEecccCCCCcee
Q 006825          295 IKNLDNGKEFVVNEIQEDGTWKKVKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQ--NVEEGNKDSFDLNNNGSSGGGMK  372 (630)
Q Consensus       295 I~~LddG~~~~v~e~~~dg~~~~l~dv~TG~~lt~eef~~l~GHs~~V~~Lafs~--~laSgS~D~tvr~vWD~~tG~~~  372 (630)
                      ++--..+..++|..+  ||. .+|.++.+...      ....-|..++...+|.+  .+++|+-|+.|| ..|+.++...
T Consensus        19 v~f~~~~~~LLvssW--Dgs-lrlYdv~~~~l------~~~~~~~~plL~c~F~d~~~~~~G~~dg~vr-~~Dln~~~~~   88 (323)
T KOG1036|consen   19 VKFSPSSSDLLVSSW--DGS-LRLYDVPANSL------KLKFKHGAPLLDCAFADESTIVTGGLDGQVR-RYDLNTGNED   88 (323)
T ss_pred             EEEcCcCCcEEEEec--cCc-EEEEeccchhh------hhheecCCceeeeeccCCceEEEeccCceEE-EEEecCCcce
Confidence            333355666777665  665 56888876522      35566999999999999  899999999999 9999998876


Q ss_pred             EEecCCccCCEEEEEEcCCCCeEEeecCCC-----CCcc-----ccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCc
Q 006825          373 SKKKGSWFKSIRTVASSVTGHKERRSSDER-----DTSS-----EKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKD  442 (630)
Q Consensus       373 ~~lk~gH~~~V~sVAfSpdG~~lasgS~D~-----dt~s-----~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~e  442 (630)
                      ..  +.|...|++|.+++.-..+++|+.|+     |...     .......|.+++...+.|+.|..+.+|.+||+...+
T Consensus        89 ~i--gth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~kkVy~~~v~g~~LvVg~~~r~v~iyDLRn~~  166 (323)
T KOG1036|consen   89 QI--GTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQGKKVYCMDVSGNRLVVGTSDRKVLIYDLRNLD  166 (323)
T ss_pred             ee--ccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccccCceEEEEeccCCEEEEeecCceEEEEEccccc
Confidence            54  36999999999998777888999987     2221     222334899999999999999999999999998765


Q ss_pred             ccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccCc---------ccceEEEEECC
Q 006825          443 LTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGH---------LNMLLLANGSP  513 (630)
Q Consensus       443 l~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh---------~~~V~svafSp  513 (630)
                      ...   ...-..-+-.+.||++-|++.=.|.+|-||.|-+=.+...+.... ....+..|         ..+|.+++|+|
T Consensus       167 ~~~---q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~s-kkyaFkCHr~~~~~~~~~yPVNai~Fhp  242 (323)
T KOG1036|consen  167 EPF---QRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQS-KKYAFKCHRLSEKDTEIIYPVNAIAFHP  242 (323)
T ss_pred             chh---hhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhh-hceeEEeeecccCCceEEEEeceeEecc
Confidence            321   111234456799999999888889999999998866655422111 01112333         24688999999


Q ss_pred             CCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeC-CCCceEEeccCCCCEEEEEEcCC-CeEEEEEC
Q 006825          514 EPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSWSKS-QHLLSSSM  586 (630)
Q Consensus       514 dg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL~GHs~~V~sLafSPd-~~LaSgS~  586 (630)
                      -...+++|+.||.|                       .+|++ ..+.++.|..-...|..++|+.+ ..||.++.
T Consensus       243 ~~~tfaTgGsDG~V-----------------------~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~s  294 (323)
T KOG1036|consen  243 IHGTFATGGSDGIV-----------------------NIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIASS  294 (323)
T ss_pred             ccceEEecCCCceE-----------------------EEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEec
Confidence            99999999999999                       77887 67888888888788999999999 88887764

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.52  E-value=1.7e-13  Score=148.69  Aligned_cols=205  Identities=15%  Similarity=0.152  Sum_probs=152.1

Q ss_pred             CeEEEecCCcEEEEEeC---CCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCC------ceee
Q 006825          422 DVSFHGQERVRVRQYGK---SCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVES------ERKG  492 (630)
Q Consensus       422 d~l~Sgs~Dg~VriWd~---~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg------~~~~  492 (630)
                      ..+++++.++++++|.+   .......+..+.+|.+|.++|.|+++.+.+..++|||-||+|+.|++...      ....
T Consensus       307 p~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~  386 (577)
T KOG0642|consen  307 PVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPS  386 (577)
T ss_pred             CeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcc
Confidence            34789999999999998   22223345578899999999999999999999999999999999976421      1111


Q ss_pred             eeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccc---------cccCccc------c------ccE
Q 006825          493 ELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKS---------LSLDHMV------V------PET  551 (630)
Q Consensus       493 ~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s---------~s~d~~i------~------~~~  551 (630)
                      . +...+.||...|+.+++++....|++++.||+++.|..........         .+.+..-      .      ...
T Consensus       387 v-l~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~  465 (577)
T KOG0642|consen  387 V-LSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESPCTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTS  465 (577)
T ss_pred             h-hccceeccccceeeeeecccccceeeecCCceEEeeccCCcCccccCCccccCCcceEeeccchhHhhhhhccccccc
Confidence            1 1234689999999999999999999999999999999876333100         1111000      0      001


Q ss_pred             EEeC-CCCceEEecc-------CCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCCCcEEEEEe-cCCceEEEE-cCCCcE
Q 006825          552 VFAL-SDKPICSFQG-------HLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYDISLV-DRLMLR  620 (630)
Q Consensus       552 Vwdl-sgk~l~tL~G-------Hs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg~~l~t~~-H~~~V~sVa-s~~~~~  620 (630)
                      +++. .+..+..|..       -...+.-+.++|. .+.+++..|+.|+++|..++..+.... |...|++++ .+++.+
T Consensus       466 ~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~  545 (577)
T KOG0642|consen  466 IDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPY  545 (577)
T ss_pred             chhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccchheeeccceecceeecCCCce
Confidence            1111 1222333321       1134778899999 999999999999999999999998877 999999999 999999


Q ss_pred             EEEecce
Q 006825          621 FAYGAFL  627 (630)
Q Consensus       621 lAsgs~~  627 (630)
                      +.+++.+
T Consensus       546 l~s~s~d  552 (577)
T KOG0642|consen  546 LMSGSHD  552 (577)
T ss_pred             EEeecCC
Confidence            9999765

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.52  E-value=3.8e-13  Score=146.64  Aligned_cols=208  Identities=17%  Similarity=0.107  Sum_probs=152.1

Q ss_pred             CCccEecccCCCCceeE---EecCCccCCEEEEEEcCCCCeEEeecCCCC--------------CccccCCcceEEEeec
Q 006825          357 DSFDLNNNGSSGGGMKS---KKKGSWFKSIRTVASSVTGHKERRSSDERD--------------TSSEKGGRRSSSATDD  419 (630)
Q Consensus       357 D~tvr~vWD~~tG~~~~---~lk~gH~~~V~sVAfSpdG~~lasgS~D~d--------------t~s~~gh~~~Vsa~~~  419 (630)
                      |.++- .|.-..-..+.   .+...|.+.|+.|.|+-.|.||++..-+..              ...++--.+.|.++.|
T Consensus       496 ~~~~~-~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~F  574 (733)
T KOG0650|consen  496 DAAVV-TWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKF  574 (733)
T ss_pred             cccce-eechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEecccccccCchhhcCCceeEEEe
Confidence            44555 77544211111   223379999999999999999999876541              1114444566777888


Q ss_pred             CCCe-EEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCc-eeeeeecc
Q 006825          420 SQDV-SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESE-RKGELLEK  497 (630)
Q Consensus       420 s~d~-l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~-~~~~l~~~  497 (630)
                      .+.. .+-.+.-..||+||+...++     +..|..-...|..|+++|.|..|+.|+.|+.+..+|+.-.. ..++    
T Consensus       575 HPs~p~lfVaTq~~vRiYdL~kqel-----vKkL~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~----  645 (733)
T KOG0650|consen  575 HPSKPYLFVATQRSVRIYDLSKQEL-----VKKLLTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKT----  645 (733)
T ss_pred             cCCCceEEEEeccceEEEehhHHHH-----HHHHhcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHH----
Confidence            8766 22233356799999865543     44555566789999999999999999999999999997553 3333    


Q ss_pred             cccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEe-C-C---CCceEEeccCCCC---
Q 006825          498 QEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFA-L-S---DKPICSFQGHLDD---  569 (630)
Q Consensus       498 ~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwd-l-s---gk~l~tL~GHs~~---  569 (630)
                       +.-|...+..|+|++.-.++++++.|+++.+.--                  .|++ + .   --++..|.||...   
T Consensus       646 -lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg------------------~VY~Dl~qnpliVPlK~L~gH~~~~~~  706 (733)
T KOG0650|consen  646 -LRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHG------------------MVYNDLLQNPLIVPLKRLRGHEKTNDL  706 (733)
T ss_pred             -hhhhhhhhhhhhhccccceeeeecCCCcEEEEee------------------eeehhhhcCCceEeeeeccCceeeccc
Confidence             4789999999999999999999999998833211                  1111 1 1   1357788999876   


Q ss_pred             -EEEEEEcCC-CeEEEEECCCcEEEE
Q 006825          570 -VLDLSWSKS-QHLLSSSMDKTVRLW  593 (630)
Q Consensus       570 -V~sLafSPd-~~LaSgS~DgtVrIW  593 (630)
                       |+.+.|+|. -+|.|++.||+||||
T Consensus       707 gVLd~~wHP~qpWLfsAGAd~tirlf  732 (733)
T KOG0650|consen  707 GVLDTIWHPRQPWLFSAGADGTIRLF  732 (733)
T ss_pred             ceEeecccCCCceEEecCCCceEEee
Confidence             999999999 999999999999999

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.51  E-value=6.7e-13  Score=141.21  Aligned_cols=254  Identities=11%  Similarity=0.044  Sum_probs=171.4

Q ss_pred             eEEEEcCCCceEeeecceeeecCccceeEEEeec----ceEeecCCCccEecccCCCCce--eEEecCCccCCEEEEEEc
Q 006825          316 KKVKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQ----NVEEGNKDSFDLNNNGSSGGGM--KSKKKGSWFKSIRTVASS  389 (630)
Q Consensus       316 ~~l~dv~TG~~lt~eef~~l~GHs~~V~~Lafs~----~laSgS~D~tvr~vWD~~tG~~--~~~lk~gH~~~V~sVAfS  389 (630)
                      ..+|++++.+.- .+.+..+.+|+..|..|.|+|    .+.+.|.|+|+| +=|++++..  +..++ .-...+.++.|+
T Consensus       212 VG~Wn~~~~~~d-~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR-~~D~~~~i~e~v~s~~-~d~~~fs~~d~~  288 (498)
T KOG4328|consen  212 VGLWNFGTQEKD-KDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIR-LQDFEGNISEEVLSLD-TDNIWFSSLDFS  288 (498)
T ss_pred             EEEEecCCCCCc-cCceEEeccCCccccceEecCCChhheeeeccCceee-eeeecchhhHHHhhcC-ccceeeeecccc
Confidence            569999744333 345677899999999999999    788999999999 999887643  33332 223344556666


Q ss_pred             CCCCeEEeecCCC------------CCccccCCcceEEEeecCCCe---EEEecCCcEEEEEeCCCCcccceeeeeEecc
Q 006825          390 VTGHKERRSSDER------------DTSSEKGGRRSSSATDDSQDV---SFHGQERVRVRQYGKSCKDLTALYKCQEIQA  454 (630)
Q Consensus       390 pdG~~lasgS~D~------------dt~s~~gh~~~Vsa~~~s~d~---l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~g  454 (630)
                      .+..-+..+..-+            +-...+-|..-|..+++.+..   +++++.|.+++|||+..-...... .-....
T Consensus       289 ~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp-~lst~~  367 (498)
T KOG4328|consen  289 AESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASP-FLSTLP  367 (498)
T ss_pred             CCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCc-ceeccc
Confidence            6544333332221            111256677788888888766   999999999999998644322211 223456


Q ss_pred             cCcCEEEEEEccCCCEEEEEeCCCcEEEEECc----CCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeee
Q 006825          455 HNGSIWSIKFSLDGRYLASAGEDCVIHVWQVV----ESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKK  530 (630)
Q Consensus       455 Ht~~V~sVaFSpDG~~LASgS~DgtIrVWDl~----tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~  530 (630)
                      |..+|.+..|||.|-.|+|-+.|..|||||..    ......++.-....+---..+...|.|+..+|+.+-.-..|   
T Consensus       368 HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~I---  444 (498)
T KOG4328|consen  368 HRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPI---  444 (498)
T ss_pred             ccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceeeccCcccccccchhheeCCCccEEEEeccCcce---
Confidence            99999999999977779999999999999983    33333332111111111234567899999999998766666   


Q ss_pred             cccccccccccccCccccccEEEeCCC-CceEEeccCCC-CEEE-EEEcCC-CeEEEE-ECCCcEEEEeCC
Q 006825          531 RRGRSINRKSLSLDHMVVPETVFALSD-KPICSFQGHLD-DVLD-LSWSKS-QHLLSS-SMDKTVRLWHLS  596 (630)
Q Consensus       531 ~~~~~~~~~s~s~d~~i~~~~Vwdlsg-k~l~tL~GHs~-~V~s-LafSPd-~~LaSg-S~DgtVrIWDl~  596 (630)
                                          -|++.++ +.++.|..... .|.+ ..|+|- ..+++| ..-|.|.||--+
T Consensus       445 --------------------Dv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft~k  495 (498)
T KOG4328|consen  445 --------------------DVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFTNK  495 (498)
T ss_pred             --------------------eEEcCCCCEEeeeccCccccccccceeecccccceeccCCccceEEEEecC
Confidence                                6777754 44777765544 5555 478997 435544 457888888544

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.51  E-value=5.6e-14  Score=150.22  Aligned_cols=281  Identities=11%  Similarity=0.049  Sum_probs=203.3

Q ss_pred             ceeeecCccceeEEEeec---ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCC--CCeEEeecCCCC---
Q 006825          332 FEMCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVT--GHKERRSSDERD---  403 (630)
Q Consensus       332 f~~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpd--G~~lasgS~D~d---  403 (630)
                      ...|.+|.+.|..|.|..   .|+|||.|.++. +||+.++..+..+..||...|-...|-|.  -..+++.+.|+.   
T Consensus       135 ~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv-~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~  213 (559)
T KOG1334|consen  135 QKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVV-VWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRV  213 (559)
T ss_pred             hhcccCCCCccceeeecccCceeeccCccceEE-eehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceee
Confidence            367889999999999988   799999999999 99999999999999999999998889883  356888887771   


Q ss_pred             -----------CccccCCcceEEEee---cCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCc---CEEEEEEcc
Q 006825          404 -----------TSSEKGGRRSSSATD---DSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNG---SIWSIKFSL  466 (630)
Q Consensus       404 -----------t~s~~gh~~~Vsa~~---~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~---~V~sVaFSp  466 (630)
                                 +.-+..|...|..++   +++..+++++.|+.|.-.|+.+........  .-+.+..   ..++|+..|
T Consensus       214 s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~--cr~~~~~~~v~L~~Ia~~P  291 (559)
T KOG1334|consen  214 SEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFV--CREADEKERVGLYTIAVDP  291 (559)
T ss_pred             eeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceee--eeccCCccceeeeeEecCC
Confidence                       222444555555444   555559999999999999988765433322  3344554   568999999


Q ss_pred             CC-CEEEEEeCCCcEEEEECcCCcee------eeeeccc-ccCcccceEEEEECCCCCEEEEeeCCCeeeeeccccccc-
Q 006825          467 DG-RYLASAGEDCVIHVWQVVESERK------GELLEKQ-EDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSIN-  537 (630)
Q Consensus       467 DG-~~LASgS~DgtIrVWDl~tg~~~------~~l~~~~-~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~-  537 (630)
                      -. .++|+|+.|..+||||.+.-...      ..+.... .......|++++|+.++.-++++-.|..|.+.......- 
T Consensus       292 ~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~  371 (559)
T KOG1334|consen  292 RNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGS  371 (559)
T ss_pred             CCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCC
Confidence            44 48999999999999998643221      2211000 112335688999998877777777888776554332111 


Q ss_pred             -ccccccCccccccEEEeCCCCceE-EeccCCC--CEEEEEEc-CC-CeEEEEECCCcEEEEeCCCCcEEEEEe-cCCce
Q 006825          538 -RKSLSLDHMVVPETVFALSDKPIC-SFQGHLD--DVLDLSWS-KS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYD  610 (630)
Q Consensus       538 -~~s~s~d~~i~~~~Vwdlsgk~l~-tL~GHs~--~V~sLafS-Pd-~~LaSgS~DgtVrIWDl~tg~~l~t~~-H~~~V  610 (630)
                       ....++.            ...+. .++||..  .|..+-|- |. .|++|||.=|.|.||+-.+++.|+.+. ...-|
T Consensus       372 ~p~~~s~~------------~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VV  439 (559)
T KOG1334|consen  372 EPDPSSPR------------EQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVV  439 (559)
T ss_pred             CCCCCcch------------hhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceE
Confidence             0011100            12222 3889975  47888875 55 999999999999999999999998887 33389


Q ss_pred             EEEE-cCCCcEEEEecce
Q 006825          611 ISLV-DRLMLRFAYGAFL  627 (630)
Q Consensus       611 ~sVa-s~~~~~lAsgs~~  627 (630)
                      +||. +|..-.||+.+-.
T Consensus       440 NCLEpHP~~PvLAsSGid  457 (559)
T KOG1334|consen  440 NCLEPHPHLPVLASSGID  457 (559)
T ss_pred             eccCCCCCCchhhccCCc
Confidence            9999 9988888887644

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.51  E-value=2.1e-13  Score=140.22  Aligned_cols=247  Identities=15%  Similarity=0.133  Sum_probs=175.2

Q ss_pred             cccccEEEEE--CCCCcEEEEeeecCCCceeEEEEcCCCceEeeecceeeecCccceeEEEeec----ceEeecCCCccE
Q 006825          288 VAEQGCLIKN--LDNGKEFVVNEIQEDGTWKKVKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQ----NVEEGNKDSFDL  361 (630)
Q Consensus       288 ~~~~~~~I~~--LddG~~~~v~e~~~dg~~~~l~dv~TG~~lt~eef~~l~GHs~~V~~Lafs~----~laSgS~D~tvr  361 (630)
                      +|...-+-|.  +.+|..|++..+ .-|. .++-++.+++..     ..++||...|.+|-|.|    +++++|.|.++|
T Consensus        89 ~Esfytcsw~yd~~~~~p~la~~G-~~Gv-IrVid~~~~~~~-----~~~~ghG~sINeik~~p~~~qlvls~SkD~svR  161 (385)
T KOG1034|consen   89 DESFYTCSWSYDSNTGNPFLAAGG-YLGV-IRVIDVVSGQCS-----KNYRGHGGSINEIKFHPDRPQLVLSASKDHSVR  161 (385)
T ss_pred             CcceEEEEEEecCCCCCeeEEeec-ceeE-EEEEecchhhhc-----cceeccCccchhhhcCCCCCcEEEEecCCceEE
Confidence            3344334454  456778877554 4454 567788888888     89999999999999998    799999999999


Q ss_pred             ecccCCCCceeEEecC--CccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCcEEEEEeCC
Q 006825          362 NNNGSSGGGMKSKKKG--SWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKS  439 (630)
Q Consensus       362 ~vWD~~tG~~~~~lk~--gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~  439 (630)
                       +|++.+..++..+-+  ||...|.+|.|+++|.+++++                             +.|..+++|++.
T Consensus       162 -lwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~Sc-----------------------------GmDhslk~W~l~  211 (385)
T KOG1034|consen  162 -LWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASC-----------------------------GMDHSLKLWRLN  211 (385)
T ss_pred             -EEeccCCeEEEEecccccccCcEEEEEEcCCCCeeecc-----------------------------CCcceEEEEecC
Confidence             999999999998874  899999999999999888654                             455568888876


Q ss_pred             CCcccce----------------------eee-eEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEEC-cCCceeeee-
Q 006825          440 CKDLTAL----------------------YKC-QEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQV-VESERKGEL-  494 (630)
Q Consensus       440 ~~el~~~----------------------~~v-~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl-~tg~~~~~l-  494 (630)
                      .+++...                      +.. .+-.-|...|-|+.|  =|.+++|=|-++.|..|.. +-++.+... 
T Consensus       212 ~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw--~gd~ilSkscenaI~~w~pgkl~e~~~~vk  289 (385)
T KOG1034|consen  212 VKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRW--FGDFILSKSCENAIVCWKPGKLEESIHNVK  289 (385)
T ss_pred             hhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHH--HhhheeecccCceEEEEecchhhhhhhccC
Confidence            4432110                      000 123458888999988  4789999999999999987 222221111 


Q ss_pred             -------ecccccCcccceEEEEE--CCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeCC-CCc--eEE
Q 006825          495 -------LEKQEDGHLNMLLLANG--SPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALS-DKP--ICS  562 (630)
Q Consensus       495 -------~~~~~~gh~~~V~svaf--Spdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdls-gk~--l~t  562 (630)
                             +...+.-....++.+.|  .|-++.|+.|...|.+                       .+|++. ..+  ..+
T Consensus       290 p~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v-----------------------~vwdL~~~ep~~~tt  346 (385)
T KOG1034|consen  290 PPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKV-----------------------YVWDLDNNEPPKCTT  346 (385)
T ss_pred             CCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcE-----------------------EEEECCCCCCccCce
Confidence                   01112223344555555  4558899999999999                       677762 222  222


Q ss_pred             ecc--CCCCEEEEEEcCC-CeEEEEECCCcEEEEeCC
Q 006825          563 FQG--HLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLS  596 (630)
Q Consensus       563 L~G--Hs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~  596 (630)
                      +..  -...|...+|+.| .+|+....|++|--||..
T Consensus       347 l~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv  383 (385)
T KOG1034|consen  347 LTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV  383 (385)
T ss_pred             EEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence            322  2246899999999 899999999999999853

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.51  E-value=4.1e-12  Score=142.94  Aligned_cols=271  Identities=14%  Similarity=0.088  Sum_probs=207.0

Q ss_pred             eEEEEcCCCceEeeecceeeecCccceeEEEeec---ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCC
Q 006825          316 KKVKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTG  392 (630)
Q Consensus       316 ~~l~dv~TG~~lt~eef~~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG  392 (630)
                      ..||.+.||+.+     .++.++-..|+++..+|   .+|-|..+++|. +.+++.++.+.+++ .-.+.|.+++|.-||
T Consensus       184 lql~Nvrt~K~v-----~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~Vi-ifNlK~dkil~sFk-~d~g~VtslSFrtDG  256 (910)
T KOG1539|consen  184 LQLWNVRTGKVV-----YTFQEFFSRITAIEQSPALDVVAIGLENGTVI-IFNLKFDKILMSFK-QDWGRVTSLSFRTDG  256 (910)
T ss_pred             EEEEEeccCcEE-----EEecccccceeEeccCCcceEEEEeccCceEE-EEEcccCcEEEEEE-ccccceeEEEeccCC
Confidence            579999999999     99999999999999999   789999999999 99999999999998 336899999999998


Q ss_pred             CeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEE
Q 006825          393 HKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLA  472 (630)
Q Consensus       393 ~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LA  472 (630)
                      ..+                            +++|..-|.+-+||+..+.+    ..++..+|.+.|..+.|-|....|+
T Consensus       257 ~p~----------------------------las~~~~G~m~~wDLe~kkl----~~v~~nah~~sv~~~~fl~~epVl~  304 (910)
T KOG1539|consen  257 NPL----------------------------LASGRSNGDMAFWDLEKKKL----INVTRNAHYGSVTGATFLPGEPVLV  304 (910)
T ss_pred             Cee----------------------------EEeccCCceEEEEEcCCCee----eeeeeccccCCcccceecCCCceEe
Confidence            754                            46777788999999987764    2344568999999999999999999


Q ss_pred             EEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEEC-CCCCEEEEeeCCCeeeeeccccccc--------------
Q 006825          473 SAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGS-PEPTSLSPKHLDNHLEKKRRGRSIN--------------  537 (630)
Q Consensus       473 SgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafS-pdg~~lasgs~Dg~I~i~~~~~~~~--------------  537 (630)
                      |++.|..+++|=..++.-...++ ....||..+..++.|. .+|..+.+++.|++++.........              
T Consensus       305 ta~~DnSlk~~vfD~~dg~pR~L-R~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~k  383 (910)
T KOG1539|consen  305 TAGADNSLKVWVFDSGDGVPRLL-RSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAK  383 (910)
T ss_pred             eccCCCceeEEEeeCCCCcchhe-eeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccc
Confidence            99999999999776554332222 2248999999999998 5699999999999765433211000              


Q ss_pred             --------------ccccc--------cCccc------cccEEEeCCCCce--EEec-----cCCCCEEEEEEcCC-CeE
Q 006825          538 --------------RKSLS--------LDHMV------VPETVFALSDKPI--CSFQ-----GHLDDVLDLSWSKS-QHL  581 (630)
Q Consensus       538 --------------~~s~s--------~d~~i------~~~~Vwdlsgk~l--~tL~-----GHs~~V~sLafSPd-~~L  581 (630)
                                    +..+.        .++.+      ...+.|+...+.+  ++|.     .-...+++++.++. ++.
T Consensus       384 k~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~  463 (910)
T KOG1539|consen  384 KVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFV  463 (910)
T ss_pred             cccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceE
Confidence                          00000        01111      1125677644333  2222     12256899999998 888


Q ss_pred             EEEECCCcEEEEeCCCCcEEEEE---e-cCCceEEEE-cCCCcEEEEecc
Q 006825          582 LSSSMDKTVRLWHLSSKTCLKIF---S-HSDYDISLV-DRLMLRFAYGAF  626 (630)
Q Consensus       582 aSgS~DgtVrIWDl~tg~~l~t~---~-H~~~V~sVa-s~~~~~lAsgs~  626 (630)
                      +-|..-|+|-++++.+|.....|   + |...|+.|+ +.....+.+++.
T Consensus       464 ~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~  513 (910)
T KOG1539|consen  464 FIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGA  513 (910)
T ss_pred             EEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccC
Confidence            99999999999999999999999   2 999999999 555555555543

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.51  E-value=8.7e-14  Score=145.64  Aligned_cols=134  Identities=22%  Similarity=0.346  Sum_probs=117.4

Q ss_pred             EecccCcCEEEEEEcc-CCCEEEEEeCCCcEEEEECcCCceeeeee--cccccCcccceEEEEECCC-CCEEEEeeCCCe
Q 006825          451 EIQAHNGSIWSIKFSL-DGRYLASAGEDCVIHVWQVVESERKGELL--EKQEDGHLNMLLLANGSPE-PTSLSPKHLDNH  526 (630)
Q Consensus       451 tL~gHt~~V~sVaFSp-DG~~LASgS~DgtIrVWDl~tg~~~~~l~--~~~~~gh~~~V~svafSpd-g~~lasgs~Dg~  526 (630)
                      .+.||+++|..++|+| +...|||||+|.+|+||++..+.....+.  ...+.||...|-.++|+|. ...|++++.|.+
T Consensus        76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~  155 (472)
T KOG0303|consen   76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNT  155 (472)
T ss_pred             CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCce
Confidence            4689999999999999 77899999999999999998766554443  2335899999999999997 678888999999


Q ss_pred             eeeecccccccccccccCccccccEEEeC-CCCceEEeccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCCCcEEEEE
Q 006825          527 LEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIF  604 (630)
Q Consensus       527 I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg~~l~t~  604 (630)
                      |                       .+|++ +|+.+.++. |.+.|+++.|+.+ ++|+|.+.|+.|||||.++++.+..-
T Consensus       156 v-----------------------~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~  211 (472)
T KOG0303|consen  156 V-----------------------SIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEG  211 (472)
T ss_pred             E-----------------------EEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeec
Confidence            9                       88888 888888888 9999999999999 99999999999999999999998877


Q ss_pred             e-cCC
Q 006825          605 S-HSD  608 (630)
Q Consensus       605 ~-H~~  608 (630)
                      . |.+
T Consensus       212 ~~heG  216 (472)
T KOG0303|consen  212 VAHEG  216 (472)
T ss_pred             ccccC
Confidence            5 654

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.50  E-value=1.4e-13  Score=138.05  Aligned_cols=241  Identities=16%  Similarity=0.118  Sum_probs=172.3

Q ss_pred             ecceeeecCccceeEEEeec--ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeE--------Ee--
Q 006825          330 EEFEMCVGHSPIVQELMRRQ--NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKE--------RR--  397 (630)
Q Consensus       330 eef~~l~GHs~~V~~Lafs~--~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~l--------as--  397 (630)
                      ..|-.|.+|...|+++.|..  +|.+|..-+.++ +|+..+...+..++.-|...|..+.-.|++.+.        ..  
T Consensus         5 dP~fvLRp~~~~v~s~~fqa~~rL~sg~~~G~V~-~w~lqt~r~~~~~r~~g~~~it~lq~~p~d~l~tqgRd~~L~lw~   83 (323)
T KOG0322|consen    5 DPFFVLRPHSSSVTSVLFQANERLMSGLSVGIVK-MWVLQTERDLPLIRLFGRLFITNLQSIPNDSLDTQGRDPLLILWT   83 (323)
T ss_pred             CCeeEeccccchheehhhccchhhhcccccceEE-EEEeecCccchhhhhhccceeeceeecCCcchhhcCCCceEEEEE
Confidence            45677889999999999976  899999999999 999988877777765566666665555533221        10  


Q ss_pred             ----------------------------------------ecCCC---C----------CccccCCcceEEEeecC----
Q 006825          398 ----------------------------------------SSDER---D----------TSSEKGGRRSSSATDDS----  420 (630)
Q Consensus       398 ----------------------------------------gS~D~---d----------t~s~~gh~~~Vsa~~~s----  420 (630)
                                                              ++++-   |          .....+....+.+....    
T Consensus        84 ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~  163 (323)
T KOG0322|consen   84 IAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACG  163 (323)
T ss_pred             ccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeecccccc
Confidence                                                    00000   0          00022233344444411    


Q ss_pred             CCe-EEEecCCcEEEEEeCCCCcccc-----eeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeee
Q 006825          421 QDV-SFHGQERVRVRQYGKSCKDLTA-----LYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGEL  494 (630)
Q Consensus       421 ~d~-l~Sgs~Dg~VriWd~~~~el~~-----~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l  494 (630)
                      ... ++.|.++|.|.+||..+++..-     ...+.....|..+|.++.|.+.-..=++|+.+..+-.|.+.......++
T Consensus       164 s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~  243 (323)
T KOG0322|consen  164 STFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQI  243 (323)
T ss_pred             ceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccc
Confidence            112 7889999999999998753110     1123445679999999999885555588999999999998754221111


Q ss_pred             ecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeC-CCCceEEeccCCCCEEEE
Q 006825          495 LEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDL  573 (630)
Q Consensus       495 ~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL~GHs~~V~sL  573 (630)
                      ... ..-....|..+.+-||++++|+++.|+.|                       +||.. +..++..|+-|...|++|
T Consensus       244 ~~e-~~lknpGv~gvrIRpD~KIlATAGWD~Ri-----------------------RVyswrtl~pLAVLkyHsagvn~v  299 (323)
T KOG0322|consen  244 RKE-ITLKNPGVSGVRIRPDGKILATAGWDHRI-----------------------RVYSWRTLNPLAVLKYHSAGVNAV  299 (323)
T ss_pred             cce-EEecCCCccceEEccCCcEEeecccCCcE-----------------------EEEEeccCCchhhhhhhhcceeEE
Confidence            100 11223457788999999999999999999                       77777 789999999999999999


Q ss_pred             EEcCC-CeEEEEECCCcEEEEeC
Q 006825          574 SWSKS-QHLLSSSMDKTVRLWHL  595 (630)
Q Consensus       574 afSPd-~~LaSgS~DgtVrIWDl  595 (630)
                      +|+|+ .++|.+|+|.+|-+|++
T Consensus       300 Afspd~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  300 AFSPDCELMAAASKDARISLWKL  322 (323)
T ss_pred             EeCCCCchhhhccCCceEEeeec
Confidence            99999 99999999999999986

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.50  E-value=5.4e-13  Score=142.77  Aligned_cols=170  Identities=15%  Similarity=0.189  Sum_probs=140.4

Q ss_pred             EEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccCcc
Q 006825          424 SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHL  503 (630)
Q Consensus       424 l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~  503 (630)
                      +++|+..+.|+|||++.+     .+.+.|++|+..|++|.++-...|||+++.-|-|.|-.+.++....+|.    .+..
T Consensus        94 ~~sgG~~~~Vkiwdl~~k-----l~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~----~~sg  164 (673)
T KOG4378|consen   94 EISGGQSGCVKIWDLRAK-----LIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFT----IDSG  164 (673)
T ss_pred             eeccCcCceeeehhhHHH-----HHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCcccccee----cCCC
Confidence            688899999999999744     2567799999999999999999999999999999999999988777752    3334


Q ss_pred             cceEEEEECCCCCE-EEEeeCCCeeeeecccccccccccccCccccccEEEeCCCC-ce-EEeccCCCCEEEEEEcCC--
Q 006825          504 NMLLLANGSPEPTS-LSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDK-PI-CSFQGHLDDVLDLSWSKS--  578 (630)
Q Consensus       504 ~~V~svafSpdg~~-lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk-~l-~tL~GHs~~V~sLafSPd--  578 (630)
                      ..|.-+.|+|..+. |.+++.+|.|                       .+||++|+ ++ .-.+.|..+...|+|+|.  
T Consensus       165 qsvRll~ys~skr~lL~~asd~G~V-----------------------tlwDv~g~sp~~~~~~~HsAP~~gicfspsne  221 (673)
T KOG4378|consen  165 QSVRLLRYSPSKRFLLSIASDKGAV-----------------------TLWDVQGMSPIFHASEAHSAPCRGICFSPSNE  221 (673)
T ss_pred             CeEEEeecccccceeeEeeccCCeE-----------------------EEEeccCCCcccchhhhccCCcCcceecCCcc
Confidence            56778999998654 5568888999                       89999663 33 345789999999999997  


Q ss_pred             CeEEEEECCCcEEEEeCCCCcEEEEEecCCceEEEE-cCCCcEEEEec
Q 006825          579 QHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYDISLV-DRLMLRFAYGA  625 (630)
Q Consensus       579 ~~LaSgS~DgtVrIWDl~tg~~l~t~~H~~~V~sVa-s~~~~~lAsgs  625 (630)
                      .+|++.+.|+.|.|||....+....+....+...|+ .+.+.+|+.|.
T Consensus       222 ~l~vsVG~Dkki~~yD~~s~~s~~~l~y~~Plstvaf~~~G~~L~aG~  269 (673)
T KOG4378|consen  222 ALLVSVGYDKKINIYDIRSQASTDRLTYSHPLSTVAFSECGTYLCAGN  269 (673)
T ss_pred             ceEEEecccceEEEeecccccccceeeecCCcceeeecCCceEEEeec
Confidence            889999999999999999888777777666677788 77777777764

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.49  E-value=7.4e-13  Score=134.21  Aligned_cols=238  Identities=15%  Similarity=0.153  Sum_probs=165.1

Q ss_pred             EEEcCCCceEeeecceeee-cCccceeEEEeec---ceEeecCCCccEecccCCCCce-eEEec----CCccCCEEEEEE
Q 006825          318 VKEVGTGRQLTIEEFEMCV-GHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGM-KSKKK----GSWFKSIRTVAS  388 (630)
Q Consensus       318 l~dv~TG~~lt~eef~~l~-GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~-~~~lk----~gH~~~V~sVAf  388 (630)
                      -.+.++-..+|+|.+..|- .|-+.|.+|.|.|   .+++- .|..|. +|+...+.. ...+.    .+|.....+-+|
T Consensus       101 pe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~klasm-~dn~i~-l~~l~ess~~vaev~ss~s~e~~~~ftsg~W  178 (370)
T KOG1007|consen  101 PEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSDKLASM-DDNNIV-LWSLDESSKIVAEVLSSESAEMRHSFTSGAW  178 (370)
T ss_pred             ccccCccccchhhHhhcCCHHHhCceeeEEEcCCCCeeEEe-ccCceE-EEEcccCcchheeecccccccccceeccccc
Confidence            3334455566777777765 5667899999999   45543 378888 999987765 33332    245555566666


Q ss_pred             cC--CCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEcc
Q 006825          389 SV--TGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSL  466 (630)
Q Consensus       389 Sp--dG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSp  466 (630)
                      +|  +|.                              .+....|++++.||.++...    ....-.+|...|..|.|+|
T Consensus       179 spHHdgn------------------------------qv~tt~d~tl~~~D~RT~~~----~~sI~dAHgq~vrdlDfNp  224 (370)
T KOG1007|consen  179 SPHHDGN------------------------------QVATTSDSTLQFWDLRTMKK----NNSIEDAHGQRVRDLDFNP  224 (370)
T ss_pred             CCCCccc------------------------------eEEEeCCCcEEEEEccchhh----hcchhhhhcceeeeccCCC
Confidence            66  332                              34455688999999986632    1122368999999999999


Q ss_pred             CCC-EEEEEeCCCcEEEEECcCCc-eeeeeecccccCcccceEEEEECCC-CCEEEEeeCCCeeeeeccccccc--cccc
Q 006825          467 DGR-YLASAGEDCVIHVWQVVESE-RKGELLEKQEDGHLNMLLLANGSPE-PTSLSPKHLDNHLEKKRRGRSIN--RKSL  541 (630)
Q Consensus       467 DG~-~LASgS~DgtIrVWDl~tg~-~~~~l~~~~~~gh~~~V~svafSpd-g~~lasgs~Dg~I~i~~~~~~~~--~~s~  541 (630)
                      +-+ +||||+.||.|||||.+..+ .+.+     +.+|...|++|.|+|. .++|++++.|..|.++.......  ...+
T Consensus       225 nkq~~lvt~gDdgyvriWD~R~tk~pv~e-----l~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~  299 (370)
T KOG1007|consen  225 NKQHILVTCGDDGYVRIWDTRKTKFPVQE-----LPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEF  299 (370)
T ss_pred             CceEEEEEcCCCccEEEEeccCCCccccc-----cCCCceEEEEEEecCccceEEEecCCCceeEEEecccccccccccc
Confidence            766 79999999999999997654 3444     4899999999999998 67889999999987776543111  0111


Q ss_pred             ccCccc-----cccEEEeCCCCceEEeccCCCCEEEEEEcCC--CeEEEEECCCcEEEEeCC
Q 006825          542 SLDHMV-----VPETVFALSDKPICSFQGHLDDVLDLSWSKS--QHLLSSSMDKTVRLWHLS  596 (630)
Q Consensus       542 s~d~~i-----~~~~Vwdlsgk~l~tL~GHs~~V~sLafSPd--~~LaSgS~DgtVrIWDl~  596 (630)
                      ..+..-     .-+++--+....+.++..|.+.|++++|+.-  =+|||-|.||.|-|=.+.
T Consensus       300 ~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~  361 (370)
T KOG1007|consen  300 EDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVP  361 (370)
T ss_pred             ccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEeecCC
Confidence            100000     0112222344567789999999999999864  678999999999886664

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.47  E-value=7e-12  Score=138.37  Aligned_cols=224  Identities=13%  Similarity=0.013  Sum_probs=151.9

Q ss_pred             eEEEEcCCCceEeeecceeeecCccceeEEEeec---ceEeecCC---CccEecccCCCCcee--EEecCCccCCEEEEE
Q 006825          316 KKVKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQ---NVEEGNKD---SFDLNNNGSSGGGMK--SKKKGSWFKSIRTVA  387 (630)
Q Consensus       316 ~~l~dv~TG~~lt~eef~~l~GHs~~V~~Lafs~---~laSgS~D---~tvr~vWD~~tG~~~--~~lk~gH~~~V~sVA  387 (630)
                      ..+||...+. .     ..+.+|...|..+.|+|   .|+..+.+   ..+. +||+.+|+..  ..++ +|.   ..++
T Consensus       186 i~i~d~dg~~-~-----~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~-i~dl~tg~~~~l~~~~-g~~---~~~~  254 (429)
T PRK01742        186 VRVADYDGFN-Q-----FIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLV-VHDLRSGARKVVASFR-GHN---GAPA  254 (429)
T ss_pred             EEEECCCCCC-c-----eEeccCCCccccceEcCCCCEEEEEEecCCCcEEE-EEeCCCCceEEEecCC-Ccc---Ccee
Confidence            4566654333 3     45677888899999999   57776654   4688 9999988643  3333 443   3689


Q ss_pred             EcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCc--EEEEEeCCCCcccceeeeeEecccCcCEEEEEEc
Q 006825          388 SSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERV--RVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFS  465 (630)
Q Consensus       388 fSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg--~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFS  465 (630)
                      |+|||++|+.++                            ..++  .|++|+..+++      ...+..|...+....|+
T Consensus       255 wSPDG~~La~~~----------------------------~~~g~~~Iy~~d~~~~~------~~~lt~~~~~~~~~~wS  300 (429)
T PRK01742        255 FSPDGSRLAFAS----------------------------SKDGVLNIYVMGANGGT------PSQLTSGAGNNTEPSWS  300 (429)
T ss_pred             ECCCCCEEEEEE----------------------------ecCCcEEEEEEECCCCC------eEeeccCCCCcCCEEEC
Confidence            999999887432                            1222  36666776553      34567788889999999


Q ss_pred             cCCCEEEEEe-CCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccC
Q 006825          466 LDGRYLASAG-EDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLD  544 (630)
Q Consensus       466 pDG~~LASgS-~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d  544 (630)
                      |||++|+..+ .++..+||++........++     .+..  ..+.|+|+|+.|+..+.++.+                 
T Consensus       301 pDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-----~~~~--~~~~~SpDG~~ia~~~~~~i~-----------------  356 (429)
T PRK01742        301 PDGQSILFTSDRSGSPQVYRMSASGGGASLV-----GGRG--YSAQISADGKTLVMINGDNVV-----------------  356 (429)
T ss_pred             CCCCEEEEEECCCCCceEEEEECCCCCeEEe-----cCCC--CCccCCCCCCEEEEEcCCCEE-----------------
Confidence            9999777555 67889999875432222221     2222  357899999999887665543                 


Q ss_pred             ccccccEEEeC-CCCceEEeccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeC--CCCcEEEEEe-cCCceEEEE-cCC
Q 006825          545 HMVVPETVFAL-SDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHL--SSKTCLKIFS-HSDYDISLV-DRL  617 (630)
Q Consensus       545 ~~i~~~~Vwdl-sgk~l~tL~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl--~tg~~l~t~~-H~~~V~sVa-s~~  617 (630)
                             +|++ +++.. .+..+ .....++|+|+ .+|+.++.++.+++|++  .+|++++.+. |.+.+...+ +|.
T Consensus       357 -------~~Dl~~g~~~-~lt~~-~~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g~~~~p~wsp~  426 (429)
T PRK01742        357 -------KQDLTSGSTE-VLSST-FLDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLPGSDGQVKFPAWSPY  426 (429)
T ss_pred             -------EEECCCCCeE-EecCC-CCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEccCCCCCCCCcccCCC
Confidence                   4565 34332 23222 12356889999 89999999999999986  3688888887 777777776 543

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.46  E-value=2.1e-12  Score=131.09  Aligned_cols=235  Identities=13%  Similarity=0.181  Sum_probs=165.7

Q ss_pred             CCCCceeEEecCCccCCEEEEEEcCCCC-----eEEeecCCC------------------CCccccCCcceEEEeecCC-
Q 006825          366 SSGGGMKSKKKGSWFKSIRTVASSVTGH-----KERRSSDER------------------DTSSEKGGRRSSSATDDSQ-  421 (630)
Q Consensus       366 ~~tG~~~~~lk~gH~~~V~sVAfSpdG~-----~lasgS~D~------------------dt~s~~gh~~~Vsa~~~s~-  421 (630)
                      -.+++.+.+-...|--+++.+-|.|+.+     +||+.++--                  .+.+...+...+++.+... 
T Consensus        82 ~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~  161 (364)
T KOG0290|consen   82 EDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATSSDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEV  161 (364)
T ss_pred             cCCCceeccCCCCCCCCccceEecCCccccCcchhhcccCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccC
Confidence            3455555554457888999999999864     466655421                  1122344555666666654 


Q ss_pred             --CeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCC-EEEEEeCCCcEEEEECcCCceeeeeeccc
Q 006825          422 --DVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGR-YLASAGEDCVIHVWQVVESERKGELLEKQ  498 (630)
Q Consensus       422 --d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~-~LASgS~DgtIrVWDl~tg~~~~~l~~~~  498 (630)
                        ..+.+.+-|-+..|||+.++.  ..+....|-+|...|+.|+|..++. .+||.|.||.||++|++.-+.-..+..  
T Consensus       162 dp~~igtSSiDTTCTiWdie~~~--~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE--  237 (364)
T KOG0290|consen  162 DPNLIGTSSIDTTCTIWDIETGV--SGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYE--  237 (364)
T ss_pred             CcceeEeecccCeEEEEEEeecc--ccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEec--
Confidence              338899999999999998762  1223466889999999999999664 899999999999999987654333321  


Q ss_pred             ccCcccceEEEEECCC-CCEEEEeeCCC-eeeeecccccccccccccCccccccEEEeC--CCCceEEeccCCCCEEEEE
Q 006825          499 EDGHLNMLLLANGSPE-PTSLSPKHLDN-HLEKKRRGRSINRKSLSLDHMVVPETVFAL--SDKPICSFQGHLDDVLDLS  574 (630)
Q Consensus       499 ~~gh~~~V~svafSpd-g~~lasgs~Dg-~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl--sgk~l~tL~GHs~~V~sLa  574 (630)
                      ......+...++|++. ..++|+-..|. .|                       .|.++  ...++..|.+|...|+.++
T Consensus       238 ~p~~~~pLlRLswnkqDpnymATf~~dS~~V-----------------------~iLDiR~P~tpva~L~~H~a~VNgIa  294 (364)
T KOG0290|consen  238 DPSPSTPLLRLSWNKQDPNYMATFAMDSNKV-----------------------VILDIRVPCTPVARLRNHQASVNGIA  294 (364)
T ss_pred             CCCCCCcceeeccCcCCchHHhhhhcCCceE-----------------------EEEEecCCCcceehhhcCcccccceE
Confidence            1222466777888775 56666644443 33                       45555  5789999999999999999


Q ss_pred             EcCC--CeEEEEECCCcEEEEeCCCCc------EEEEEecCCceEEEE----cCCCcEEEEecce
Q 006825          575 WSKS--QHLLSSSMDKTVRLWHLSSKT------CLKIFSHSDYDISLV----DRLMLRFAYGAFL  627 (630)
Q Consensus       575 fSPd--~~LaSgS~DgtVrIWDl~tg~------~l~t~~H~~~V~sVa----s~~~~~lAsgs~~  627 (630)
                      |.|.  ..|+|++.|..+.|||+.+.-      ++..+.-.+.|+.|+    .++...++++...
T Consensus       295 WaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~a~~EVNqi~Ws~~~~Dwiai~~~kkl  359 (364)
T KOG0290|consen  295 WAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYTAGGEVNQIQWSSSQPDWIAICFGKKL  359 (364)
T ss_pred             ecCCCCceeeecCCcceEEEEecccccccCCCCchhhhhccceeeeeeecccCCCEEEEEecCee
Confidence            9997  899999999999999997532      334445677788888    4455555555544

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.46  E-value=1e-12  Score=138.84  Aligned_cols=173  Identities=18%  Similarity=0.151  Sum_probs=124.8

Q ss_pred             EEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccCccc
Q 006825          425 FHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLN  504 (630)
Q Consensus       425 ~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~  504 (630)
                      ++|+.||++|+|++....     .+..+.+|.+.|.+|.|+|||++|+|-+.| ..+||++.++..+..+.   ......
T Consensus       160 atgg~dg~lRv~~~Ps~~-----t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t---~~~k~~  230 (398)
T KOG0771|consen  160 ATGGTDGTLRVWEWPSML-----TILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKT---PFSKDE  230 (398)
T ss_pred             eeccccceEEEEecCcch-----hhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcC---Ccccch
Confidence            567788999999975543     345678899999999999999999999999 99999999997666541   133334


Q ss_pred             ceEEEEECCCC---CEEEE--eeCCCeeeeecccccccccccccCccccccEEEeCC-CCceEEeccCCCCEEEEEEcCC
Q 006825          505 MLLLANGSPEP---TSLSP--KHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALS-DKPICSFQGHLDDVLDLSWSKS  578 (630)
Q Consensus       505 ~V~svafSpdg---~~las--gs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdls-gk~l~tL~GHs~~V~sLafSPd  578 (630)
                      .+..+.|+.|.   .+.+.  ....+.|..++.                  .+|.-. --+.++...-...|.+++.+++
T Consensus       231 ~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~------------------~~w~~~~~l~~~~~~~~~~siSsl~VS~d  292 (398)
T KOG0771|consen  231 MFSSCRFSVDNAQETLRLAASQFPGGGVRLCDI------------------SLWSGSNFLRLRKKIKRFKSISSLAVSDD  292 (398)
T ss_pred             hhhhceecccCCCceEEEEEecCCCCceeEEEe------------------eeeccccccchhhhhhccCcceeEEEcCC
Confidence            55677787776   32222  223333432221                  344432 0111222223347999999999


Q ss_pred             -CeEEEEECCCcEEEEeCCCCcEEEEEe--cCCceEEEE-cCCCcEEEEe
Q 006825          579 -QHLLSSSMDKTVRLWHLSSKTCLKIFS--HSDYDISLV-DRLMLRFAYG  624 (630)
Q Consensus       579 -~~LaSgS~DgtVrIWDl~tg~~l~t~~--H~~~V~sVa-s~~~~~lAsg  624 (630)
                       ++++-|++||.|-|+++.+-++++.++  |...|+.|. .|+..++++-
T Consensus       293 Gkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~sv  342 (398)
T KOG0771|consen  293 GKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASV  342 (398)
T ss_pred             CcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCccccc
Confidence             999999999999999999999999998  999999999 7666655543

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.45  E-value=3.2e-13  Score=141.90  Aligned_cols=165  Identities=25%  Similarity=0.334  Sum_probs=129.1

Q ss_pred             CcCEEEEEEccCCC-EEEEEeCCCcEEEEECcCCceee----eeecccccCcccceEEEEECCCCCEEEEeeCCCeeeee
Q 006825          456 NGSIWSIKFSLDGR-YLASAGEDCVIHVWQVVESERKG----ELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKK  530 (630)
Q Consensus       456 t~~V~sVaFSpDG~-~LASgS~DgtIrVWDl~tg~~~~----~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~  530 (630)
                      ..+|+.+.|.++.. +||||+.|..||||-++.++...    ......+.+|...|+.+.|+|+|.++++|++++.|.+|
T Consensus        13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lW   92 (434)
T KOG1009|consen   13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLW   92 (434)
T ss_pred             CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEE
Confidence            35899999999776 99999999999999987654433    12234568999999999999999999999999999999


Q ss_pred             cccccccccccccCccccccEEEeCCCCceEEeccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCCCcEEEEEe-cCC
Q 006825          531 RRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSD  608 (630)
Q Consensus       531 ~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg~~l~t~~-H~~  608 (630)
                      +.......   ..+.   ........-...+.+.+|...|+.++|+|+ .++++++.|.++++||+..|+.+..+. |..
T Consensus        93 k~~~~~~~---~~d~---e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~  166 (434)
T KOG1009|consen   93 KQGDVRIF---DADT---EADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEH  166 (434)
T ss_pred             EecCcCCc---cccc---hhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeecccccc
Confidence            87751110   0111   001111112345667889999999999999 999999999999999999999999998 999


Q ss_pred             ceEEEE-cCCCcEEEEecc
Q 006825          609 YDISLV-DRLMLRFAYGAF  626 (630)
Q Consensus       609 ~V~sVa-s~~~~~lAsgs~  626 (630)
                      +|.-++ +|...++++-+.
T Consensus       167 yvqgvawDpl~qyv~s~s~  185 (434)
T KOG1009|consen  167 YVQGVAWDPLNQYVASKSS  185 (434)
T ss_pred             ccceeecchhhhhhhhhcc
Confidence            999999 776666665443

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.45  E-value=2.5e-12  Score=132.96  Aligned_cols=262  Identities=15%  Similarity=0.134  Sum_probs=172.8

Q ss_pred             CCCCcEEEEeeecCCCceeEEEEcCCCceEeeecceeeecCccceeEEEeec-----ceEeecCCCccEecccCCCCcee
Q 006825          298 LDNGKEFVVNEIQEDGTWKKVKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQ-----NVEEGNKDSFDLNNNGSSGGGMK  372 (630)
Q Consensus       298 LddG~~~~v~e~~~dg~~~~l~dv~TG~~lt~eef~~l~GHs~~V~~Lafs~-----~laSgS~D~tvr~vWD~~tG~~~  372 (630)
                      +.+|++-.|...-..|. .++.+..||+.|     +.+.||.+.+..+.|..     .+.+++.|++|| +||..+....
T Consensus        35 ~~~~~e~~vav~lSngs-v~lyd~~tg~~l-----~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr-~wD~Rs~~e~  107 (376)
T KOG1188|consen   35 VKDGFETAVAVSLSNGS-VRLYDKGTGQLL-----EEFKGPPATTNGVRFISCDSPHGVISCSSDGTVR-LWDIRSQAES  107 (376)
T ss_pred             hccCcceeEEEEecCCe-EEEEeccchhhh-----heecCCCCcccceEEecCCCCCeeEEeccCCeEE-EEEeecchhh
Confidence            45665544433322343 569999999999     88888888888888865     688999999999 9999886654


Q ss_pred             EEec-CCcc-CCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeee
Q 006825          373 SKKK-GSWF-KSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQ  450 (630)
Q Consensus       373 ~~lk-~gH~-~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~  450 (630)
                      .++. .+|. .+..+++.--.++.++.|..-                         ...+..|.+||++..+..   +.+
T Consensus       108 a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~-------------------------~~s~A~v~lwDvR~~qq~---l~~  159 (376)
T KOG1188|consen  108 ARISWTQQSGTPFICLDLNCKKNIIACGTEL-------------------------TRSDASVVLWDVRSEQQL---LRQ  159 (376)
T ss_pred             hheeccCCCCCcceEeeccCcCCeEEecccc-------------------------ccCceEEEEEEeccccch---hhh
Confidence            4433 2454 345555554444555443211                         123556899999765420   123


Q ss_pred             EecccCcCEEEEEEcc-CCCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCC-CEEEEeeCCCeee
Q 006825          451 EIQAHNGSIWSIKFSL-DGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEP-TSLSPKHLDNHLE  528 (630)
Q Consensus       451 tL~gHt~~V~sVaFSp-DG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg-~~lasgs~Dg~I~  528 (630)
                      -...|.+-|++|+|+| +.++|+|||-||-|.|+|+......-.|+  ....|...|..+.|..++ +.|.+-+..++..
T Consensus       160 ~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~--~viN~~sSI~~igw~~~~ykrI~clTH~Etf~  237 (376)
T KOG1188|consen  160 LNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALL--HVINHGSSIHLIGWLSKKYKRIMCLTHMETFA  237 (376)
T ss_pred             hhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHH--HhhcccceeeeeeeecCCcceEEEEEccCcee
Confidence            3578999999999999 77899999999999999997653322221  124566778999998876 3466667778777


Q ss_pred             eeccccccccccc--------------ccCcccc---c--cEEEeC--------------------CCCceEEecc-CCC
Q 006825          529 KKRRGRSINRKSL--------------SLDHMVV---P--ETVFAL--------------------SDKPICSFQG-HLD  568 (630)
Q Consensus       529 i~~~~~~~~~~s~--------------s~d~~i~---~--~~Vwdl--------------------sgk~l~tL~G-Hs~  568 (630)
                      +|..........+              ..+..+-   +  ..+|.+                    ..+.+..|+| |..
T Consensus       238 ~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~e  317 (376)
T KOG1188|consen  238 IYELEDGSEETWLENPDVSADDLRKEDNCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEE  317 (376)
T ss_pred             EEEccCCChhhcccCccchhhhHHhhhhhhheeecccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHH
Confidence            8876553221111              1111110   0  012222                    1234555676 667


Q ss_pred             CEEEEEEcCC-CeEEEEECCCcEEEEeCC
Q 006825          569 DVLDLSWSKS-QHLLSSSMDKTVRLWHLS  596 (630)
Q Consensus       569 ~V~sLafSPd-~~LaSgS~DgtVrIWDl~  596 (630)
                      -|.++.|.-. .+|.||+.||.+.+|...
T Consensus       318 iVR~i~~~~~~~~l~TGGEDG~l~~Wk~~  346 (376)
T KOG1188|consen  318 IVRDILFDVKNDVLYTGGEDGLLQAWKVE  346 (376)
T ss_pred             HHHHHhhhcccceeeccCCCceEEEEecC
Confidence            7888888755 899999999999999854

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.41  E-value=2.6e-12  Score=135.75  Aligned_cols=243  Identities=13%  Similarity=0.072  Sum_probs=166.0

Q ss_pred             cccccccEEEEECCCCcEEEEeeecCCCceeEEEEcCCCceEeeecceeeecCccceeEEEeec---ceEeecCCCccEe
Q 006825          286 AGVAEQGCLIKNLDNGKEFVVNEIQEDGTWKKVKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQ---NVEEGNKDSFDLN  362 (630)
Q Consensus       286 ~~~~~~~~~I~~LddG~~~~v~e~~~dg~~~~l~dv~TG~~lt~eef~~l~GHs~~V~~Lafs~---~laSgS~D~tvr~  362 (630)
                      ..-+.+..+++.+..+.+-.        .|.-+...+.++....+.++.+.--... ..++|.+   .|++|..|+++| 
T Consensus       100 ~~h~~~~~~~~k~~~~~~~~--------~~e~~~~~d~~~~~~a~v~~~l~~~g~~-k~vaf~~~gs~latgg~dg~lR-  169 (398)
T KOG0771|consen  100 SVHPNGNGRARKLPSGCECF--------HFEFVASSDFNAETAANVYQKLVDFGQQ-KVVAFNGDGSKLATGGTDGTLR-  169 (398)
T ss_pred             hccccCCeeeeecCCccccc--------ccccccccccchhhhhhHhHHHhhcCcc-eEEEEcCCCCEeeeccccceEE-
Confidence            33456667777776665411        1112223333444333444444432222 6788877   799999999999 


Q ss_pred             cccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCc
Q 006825          363 NNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKD  442 (630)
Q Consensus       363 vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~e  442 (630)
                      +|++.+-..+.... .|.+.|+.+.|||||+.|++-+                             .| ..++|++.++-
T Consensus       170 v~~~Ps~~t~l~e~-~~~~eV~DL~FS~dgk~lasig-----------------------------~d-~~~VW~~~~g~  218 (398)
T KOG0771|consen  170 VWEWPSMLTILEEI-AHHAEVKDLDFSPDGKFLASIG-----------------------------AD-SARVWSVNTGA  218 (398)
T ss_pred             EEecCcchhhhhhH-hhcCccccceeCCCCcEEEEec-----------------------------CC-ceEEEEeccCc
Confidence            99987777777777 8999999999999999987543                             33 58999998762


Q ss_pred             ccceeeeeEec--ccCcCEEEEEEccCC-----CEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCC
Q 006825          443 LTALYKCQEIQ--AHNGSIWSIKFSLDG-----RYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEP  515 (630)
Q Consensus       443 l~~~~~v~tL~--gHt~~V~sVaFSpDG-----~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg  515 (630)
                           +++.+.  .-......+.|+.|+     ++++.-..-+.|++|++.....-..+.......-...|.+++.+++|
T Consensus       219 -----~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dG  293 (398)
T KOG0771|consen  219 -----ALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDG  293 (398)
T ss_pred             -----hhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCC
Confidence                 233332  233456788898888     45555566677888887544332111111122334578999999999


Q ss_pred             CEEEEeeCCCeeeeecccccccccccccCccccccEEEeCC-CCceE-EeccCCCCEEEEEEcCC-CeEEEEECCCcEEE
Q 006825          516 TSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALS-DKPIC-SFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRL  592 (630)
Q Consensus       516 ~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdls-gk~l~-tL~GHs~~V~sLafSPd-~~LaSgS~DgtVrI  592 (630)
                      ++++.|+.||.|                       .|++.. -+.++ .-+.|...|+.|.|+|+ +++++-|.|.++.|
T Consensus       294 kf~AlGT~dGsV-----------------------ai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v  350 (398)
T KOG0771|consen  294 KFLALGTMDGSV-----------------------AIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAV  350 (398)
T ss_pred             cEEEEeccCCcE-----------------------EEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeE
Confidence            999999999998                       555552 23332 23579999999999999 99999999999999


Q ss_pred             EeCCC
Q 006825          593 WHLSS  597 (630)
Q Consensus       593 WDl~t  597 (630)
                      ..+.-
T Consensus       351 ~~l~v  355 (398)
T KOG0771|consen  351 TKLAV  355 (398)
T ss_pred             EEEee
Confidence            87754

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.41  E-value=4.8e-12  Score=139.05  Aligned_cols=228  Identities=15%  Similarity=0.117  Sum_probs=150.6

Q ss_pred             ceEeecCCCccEecccCCCCcee------EEecCCccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCe
Q 006825          350 NVEEGNKDSFDLNNNGSSGGGMK------SKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDV  423 (630)
Q Consensus       350 ~laSgS~D~tvr~vWD~~tG~~~------~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~  423 (630)
                      .|+-+-.|+.|+ +.|...-.-.      .... .|...|-.+++.| |+.                            .
T Consensus        66 iLavadE~G~i~-l~dt~~~~fr~ee~~lk~~~-aH~nAifDl~wap-ge~----------------------------~  114 (720)
T KOG0321|consen   66 ILAVADEDGGII-LFDTKSIVFRLEERQLKKPL-AHKNAIFDLKWAP-GES----------------------------L  114 (720)
T ss_pred             eEEEecCCCcee-eecchhhhcchhhhhhcccc-cccceeEeeccCC-Cce----------------------------e
Confidence            688899999999 9998653322      2333 7999999999988 542                            2


Q ss_pred             EEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEcc-CCCEEEEEeCCCcEEEEECcCCce--e---------
Q 006825          424 SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSL-DGRYLASAGEDCVIHVWQVVESER--K---------  491 (630)
Q Consensus       424 l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSp-DG~~LASgS~DgtIrVWDl~tg~~--~---------  491 (630)
                      |++++.|-++|+||++..++.+.   ..+.||++.|.+++|.| +...|+||+.||.|.|||++-...  .         
T Consensus       115 lVsasGDsT~r~Wdvk~s~l~G~---~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~  191 (720)
T KOG0321|consen  115 LVSASGDSTIRPWDVKTSRLVGG---RLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYG  191 (720)
T ss_pred             EEEccCCceeeeeeeccceeecc---eeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhc
Confidence            57778888999999988876543   34889999999999999 556899999999999999863320  0         


Q ss_pred             ---------eeee--cccccCcccceEE---EEECCCCCEEEEeeC-CCeeeeecccccccccccccCccccccEEEeCC
Q 006825          492 ---------GELL--EKQEDGHLNMLLL---ANGSPEPTSLSPKHL-DNHLEKKRRGRSINRKSLSLDHMVVPETVFALS  556 (630)
Q Consensus       492 ---------~~l~--~~~~~gh~~~V~s---vafSpdg~~lasgs~-Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdls  556 (630)
                               ..+.  ......+...|..   +.+..|...||+++. |+.|++|++.+.....                .
T Consensus       192 ~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~----------------r  255 (720)
T KOG0321|consen  192 RHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAY----------------R  255 (720)
T ss_pred             cccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeeccccccc----------------c
Confidence                     0000  0001223334444   556667778888776 9999655554322110                1


Q ss_pred             CCceEE--eccC---CCCEEEEEEcCC-CeEEEEECCCcEEEEeCCCC--cEEEEEe----cCCceEEEEcCCCcEEEEe
Q 006825          557 DKPICS--FQGH---LDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSK--TCLKIFS----HSDYDISLVDRLMLRFAYG  624 (630)
Q Consensus       557 gk~l~t--L~GH---s~~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg--~~l~t~~----H~~~V~sVas~~~~~lAsg  624 (630)
                      ++++..  +.-|   .-.+.+|..... .+|...+.|++|++|+|.+-  ..+..|.    -.-+|.++..+++.++++|
T Consensus       256 ~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~Sg  335 (720)
T KOG0321|consen  256 QEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSG  335 (720)
T ss_pred             cCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEecc
Confidence            122222  2233   224556665554 67777777999999999863  3445554    2344555558889999988


Q ss_pred             cce
Q 006825          625 AFL  627 (630)
Q Consensus       625 s~~  627 (630)
                      +.+
T Consensus       336 Ssd  338 (720)
T KOG0321|consen  336 SSD  338 (720)
T ss_pred             CCC
Confidence            754

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.41  E-value=6.5e-11  Score=134.37  Aligned_cols=285  Identities=14%  Similarity=0.092  Sum_probs=195.3

Q ss_pred             ceeEEEEcCCCceEeeecceeeecCccceeEEEeec------ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEE
Q 006825          314 TWKKVKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQ------NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVA  387 (630)
Q Consensus       314 ~~~~l~dv~TG~~lt~eef~~l~GHs~~V~~Lafs~------~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVA  387 (630)
                      ....+.-+.||+++     ..|.+|...+..+.+-|      .+.+.+.|++|+ +||...+..++++. -+.... ++.
T Consensus        37 ~~V~VyS~~Tg~~i-----~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~-vwd~~~~~Llkt~~-~~~~v~-~~~  108 (792)
T KOG1963|consen   37 NFVKVYSTATGECI-----TSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIR-VWDWSDGELLKTFD-NNLPVH-ALV  108 (792)
T ss_pred             CEEEEEecchHhhh-----hhcccccCccceeeecCCCccceEEEEEecCccEE-EecCCCcEEEEEEe-cCCcee-EEE
Confidence            34567888899999     68999999999999877      466899999999 99999999988876 222211 111


Q ss_pred             E----cCCC----------CeEEeecCCC-----------------C---------------------------------
Q 006825          388 S----SVTG----------HKERRSSDER-----------------D---------------------------------  403 (630)
Q Consensus       388 f----SpdG----------~~lasgS~D~-----------------d---------------------------------  403 (630)
                      +    ....          ..+.+.+.+-                 +                                 
T Consensus       109 ~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~~~i~~~~~~~~~~v  188 (792)
T KOG1963|consen  109 YKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEFKGIVHMCKIHIYFV  188 (792)
T ss_pred             echhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCceEEEEEEeeeEEEEEe
Confidence            1    1100          0011111000                 0                                 


Q ss_pred             -C--------ccccCCcceEEEeecCCCe--EEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEE
Q 006825          404 -T--------SSEKGGRRSSSATDDSQDV--SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLA  472 (630)
Q Consensus       404 -t--------~s~~gh~~~Vsa~~~s~d~--l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LA  472 (630)
                       .        ...+.|...+++.++++..  +++|..||+|.+|.--..+... +..+.|.=|...|.+++|+++|.+|.
T Consensus       189 ~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~-~t~t~lHWH~~~V~~L~fS~~G~~Ll  267 (792)
T KOG1963|consen  189 PKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDS-ETCTLLHWHHDEVNSLSFSSDGAYLL  267 (792)
T ss_pred             cccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEecccccccc-ccceEEEecccccceeEEecCCceEe
Confidence             0        0023466667778888877  8999999999999754411111 23577888999999999999999999


Q ss_pred             EEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEE
Q 006825          473 SAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETV  552 (630)
Q Consensus       473 SgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~V  552 (630)
                      |||..|.+-+|.+.+++  +++    +..-..+|..+.++||+.+.+....|..|.+-.........+++.-....+   
T Consensus       268 SGG~E~VLv~Wq~~T~~--kqf----LPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~---  338 (792)
T KOG1963|consen  268 SGGREGVLVLWQLETGK--KQF----LPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTP---  338 (792)
T ss_pred             ecccceEEEEEeecCCC--ccc----ccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCc---
Confidence            99999999999999988  444    356668899999999999999998999885443322111111110000000   


Q ss_pred             EeCCCCceEEeccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCCCcEEEEEe------cCCc------eEEEE-cCCC
Q 006825          553 FALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS------HSDY------DISLV-DRLM  618 (630)
Q Consensus       553 wdlsgk~l~tL~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg~~l~t~~------H~~~------V~sVa-s~~~  618 (630)
                           +   +-.+..+-.+.+++.|. +.++-.+.-++|.+||+-+.+.++.+.      +.+.      |+.++ +.++
T Consensus       339 -----~---~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~g  410 (792)
T KOG1963|consen  339 -----S---TKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFG  410 (792)
T ss_pred             -----c---ccccccccceeEEEcCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccc
Confidence                 0   01123445678899997 889999999999999999887776663      3333      45555 6667


Q ss_pred             cEEEEe
Q 006825          619 LRFAYG  624 (630)
Q Consensus       619 ~~lAsg  624 (630)
                      .+.++.
T Consensus       411 s~maT~  416 (792)
T KOG1963|consen  411 SWMATL  416 (792)
T ss_pred             eEEEEe
Confidence            777765

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.41  E-value=1.3e-10  Score=123.10  Aligned_cols=218  Identities=12%  Similarity=0.113  Sum_probs=126.5

Q ss_pred             eeEEEeec---ceEeec-CCCccEecccCCC-Cce---eEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccccCCcce
Q 006825          342 VQELMRRQ---NVEEGN-KDSFDLNNNGSSG-GGM---KSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRS  413 (630)
Q Consensus       342 V~~Lafs~---~laSgS-~D~tvr~vWD~~t-G~~---~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~  413 (630)
                      ...|+|.|   .+.+++ .++.+. +|++.+ |..   ...+.  +......++|+|+|+++.                 
T Consensus        82 p~~i~~~~~g~~l~v~~~~~~~v~-v~~~~~~g~~~~~~~~~~--~~~~~~~~~~~p~g~~l~-----------------  141 (330)
T PRK11028         82 PTHISTDHQGRFLFSASYNANCVS-VSPLDKDGIPVAPIQIIE--GLEGCHSANIDPDNRTLW-----------------  141 (330)
T ss_pred             ceEEEECCCCCEEEEEEcCCCeEE-EEEECCCCCCCCceeecc--CCCcccEeEeCCCCCEEE-----------------
Confidence            34577776   344444 478888 999864 322   22222  333456688999888764                 


Q ss_pred             EEEeecCCCeEEEecCCcEEEEEeCCCC-cccce-eeeeEecccCcCEEEEEEccCCCEEEEEeC-CCcEEEEECcC--C
Q 006825          414 SSATDDSQDVSFHGQERVRVRQYGKSCK-DLTAL-YKCQEIQAHNGSIWSIKFSLDGRYLASAGE-DCVIHVWQVVE--S  488 (630)
Q Consensus       414 Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~-el~~~-~~v~tL~gHt~~V~sVaFSpDG~~LASgS~-DgtIrVWDl~t--g  488 (630)
                                 ++...+++|++|++... .+... .....+.. ......++|+|+|++|+++.+ +++|.+|++..  +
T Consensus       142 -----------v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~-g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~  209 (330)
T PRK11028        142 -----------VPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVE-GAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHG  209 (330)
T ss_pred             -----------EeeCCCCEEEEEEECCCCcccccCCCceecCC-CCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCC
Confidence                       34445678999998652 22100 00011111 123568999999999988876 89999999973  2


Q ss_pred             ce--eeeeecccc-cCcccceEEEEECCCCCEEEEeeC-CCeeeeecccccccccccccCccccccEEEeCC-CCceEEe
Q 006825          489 ER--KGELLEKQE-DGHLNMLLLANGSPEPTSLSPKHL-DNHLEKKRRGRSINRKSLSLDHMVVPETVFALS-DKPICSF  563 (630)
Q Consensus       489 ~~--~~~l~~~~~-~gh~~~V~svafSpdg~~lasgs~-Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdls-gk~l~tL  563 (630)
                      ..  +..+...+. ..+......+.++|++++++++.. ++.|                       .+|++. .....++
T Consensus       210 ~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I-----------------------~v~~i~~~~~~~~~  266 (330)
T PRK11028        210 EIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLI-----------------------SVFSVSEDGSVLSF  266 (330)
T ss_pred             CEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeE-----------------------EEEEEeCCCCeEEE
Confidence            21  222110000 011123346889999998888743 5667                       556551 1111222


Q ss_pred             ccCC---CCEEEEEEcCC-CeEEEEEC-CCcEEEEeCC--CCcE--EEEEecCCceEEEE
Q 006825          564 QGHL---DDVLDLSWSKS-QHLLSSSM-DKTVRLWHLS--SKTC--LKIFSHSDYDISLV  614 (630)
Q Consensus       564 ~GHs---~~V~sLafSPd-~~LaSgS~-DgtVrIWDl~--tg~~--l~t~~H~~~V~sVa  614 (630)
                      .+|.   .....++|+|+ ++|+++.. +++|.||++.  ++..  +.++.......|++
T Consensus       267 ~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~~~g~l~~~~~~~~g~~P~~~~  326 (330)
T PRK11028        267 EGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEIDGETGLLTELGRYAVGQGPMWVS  326 (330)
T ss_pred             eEEEeccccCCceEECCCCCEEEEEEccCCcEEEEEEcCCCCcEEEccccccCCCceEEE
Confidence            2222   23467899999 78776664 9999999874  4443  33343333344443

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.40  E-value=1.8e-12  Score=150.18  Aligned_cols=231  Identities=14%  Similarity=0.117  Sum_probs=170.9

Q ss_pred             eeecCCCceeEEEEcCCC-ceEeeecceeeecCccceeEEEeec----ceEeecCCCccEecccCCCCceeEEec-CCcc
Q 006825          307 NEIQEDGTWKKVKEVGTG-RQLTIEEFEMCVGHSPIVQELMRRQ----NVEEGNKDSFDLNNNGSSGGGMKSKKK-GSWF  380 (630)
Q Consensus       307 ~e~~~dg~~~~l~dv~TG-~~lt~eef~~l~GHs~~V~~Lafs~----~laSgS~D~tvr~vWD~~tG~~~~~lk-~gH~  380 (630)
                      ....+||. ..||++..= .-...+-+.++..|++.|..|-|.+    .||||+.|+.|. |||+++-+.-.++. ..-.
T Consensus        84 aGG~edG~-I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~-iWDlnn~~tP~~~~~~~~~  161 (1049)
T KOG0307|consen   84 AGGLEDGN-IVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEIL-IWDLNKPETPFTPGSQAPP  161 (1049)
T ss_pred             eccccCCc-eEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEE-EeccCCcCCCCCCCCCCCc
Confidence            34455665 347776641 1111133467788999999999988    799999999999 99998755444432 1234


Q ss_pred             CCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccC--cC
Q 006825          381 KSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHN--GS  458 (630)
Q Consensus       381 ~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt--~~  458 (630)
                      ..|.+|+|...-                            +..+++++.++++.|||++.++.     +-.|.-|.  ..
T Consensus       162 ~eI~~lsWNrkv----------------------------qhILAS~s~sg~~~iWDlr~~~p-----ii~ls~~~~~~~  208 (1049)
T KOG0307|consen  162 SEIKCLSWNRKV----------------------------SHILASGSPSGRAVIWDLRKKKP-----IIKLSDTPGRMH  208 (1049)
T ss_pred             ccceEeccchhh----------------------------hHHhhccCCCCCceeccccCCCc-----ccccccCCCccc
Confidence            556666554421                            12378889999999999976642     22333343  35


Q ss_pred             EEEEEEccCC-CEEEEEeCCC---cEEEEECcCCceeeeeecccccCcccceEEEEECCCC-CEEEEeeCCCeeeeeccc
Q 006825          459 IWSIKFSLDG-RYLASAGEDC---VIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEP-TSLSPKHLDNHLEKKRRG  533 (630)
Q Consensus       459 V~sVaFSpDG-~~LASgS~Dg---tIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg-~~lasgs~Dg~I~i~~~~  533 (630)
                      +..|+|+|+. ..|+++++|.   .|.+||++........    +.+|...|.++.|++.+ .++++++.|+.|      
T Consensus       209 ~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~----~~~H~~GilslsWc~~D~~lllSsgkD~~i------  278 (1049)
T KOG0307|consen  209 CSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKI----LEGHQRGILSLSWCPQDPRLLLSSGKDNRI------  278 (1049)
T ss_pred             eeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhh----hcccccceeeeccCCCCchhhhcccCCCCe------
Confidence            7899999965 4677777664   5999998755433222    48999999999999986 899999999999      


Q ss_pred             ccccccccccCccccccEEEeC-CCCceEEeccCCCCEEEEEEcCC--CeEEEEECCCcEEEEeCCCCc
Q 006825          534 RSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSWSKS--QHLLSSSMDKTVRLWHLSSKT  599 (630)
Q Consensus       534 ~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL~GHs~~V~sLafSPd--~~LaSgS~DgtVrIWDl~tg~  599 (630)
                                       ..|+. +++.+.+|....+++..+.|.|.  ..++.++.||.|-|+.+....
T Consensus       279 -----------------i~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~  330 (1049)
T KOG0307|consen  279 -----------------ICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD  330 (1049)
T ss_pred             -----------------eEecCCCceEeeecCCCCcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence                             77887 88999999988899999999996  799999999999999987643

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.40  E-value=3.2e-11  Score=126.19  Aligned_cols=256  Identities=10%  Similarity=0.070  Sum_probs=178.1

Q ss_pred             eeeecCccceeEEEeec---ceEeecCCCccEecccCC------CCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCC
Q 006825          333 EMCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSS------GGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERD  403 (630)
Q Consensus       333 ~~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~------tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~d  403 (630)
                      .-+.||.+.|.+|.|+.   .||+|+.|..++ +|.+.      +.+.++.+...|...|.|++|.....+         
T Consensus        50 KD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~-~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~---------  119 (609)
T KOG4227|consen   50 KDVREHTGCINALQFSHNDRFLASGGDDMHGR-VWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRF---------  119 (609)
T ss_pred             hhhhhhccccceeeeccCCeEEeecCCcceee-eechHHHHhhcCCCCceeccCccccceEEEEEccCCee---------
Confidence            34789999999999998   799999999999 99875      456666666567789999999764332         


Q ss_pred             CccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccC---cCEEEEEEccCCCEEEEEeCCCcE
Q 006825          404 TSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHN---GSIWSIKFSLDGRYLASAGEDCVI  480 (630)
Q Consensus       404 t~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt---~~V~sVaFSpDG~~LASgS~DgtI  480 (630)
                                          +++|..+++|..-|+.+++.     +.. -.|.   +.|+.|..+|-.+.|++.+.|+.|
T Consensus       120 --------------------~~SG~~~~~VI~HDiEt~qs-----i~V-~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V  173 (609)
T KOG4227|consen  120 --------------------LYSGERWGTVIKHDIETKQS-----IYV-ANENNNRGDVYHMDQHPTDNTLIVVTRAKLV  173 (609)
T ss_pred             --------------------EecCCCcceeEeeeccccee-----eee-ecccCcccceeecccCCCCceEEEEecCceE
Confidence                                58889999999999988753     222 2344   499999999999999999999999


Q ss_pred             EEEECcCCceeeeeecccccCcccceEEEEECCC-CCEEEEeeCCCeeeeecccccccc-------cccccCccc-----
Q 006825          481 HVWQVVESERKGELLEKQEDGHLNMLLLANGSPE-PTSLSPKHLDNHLEKKRRGRSINR-------KSLSLDHMV-----  547 (630)
Q Consensus       481 rVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpd-g~~lasgs~Dg~I~i~~~~~~~~~-------~s~s~d~~i-----  547 (630)
                      .+||.+..+....++.  ..........+-|+|. ..+|++.+..+-+.+|++..+...       ..+....+-     
T Consensus       174 ~~~D~Rd~~~~~~~~~--~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~  251 (609)
T KOG4227|consen  174 SFIDNRDRQNPISLVL--PANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSL  251 (609)
T ss_pred             EEEeccCCCCCCceee--ecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhhee
Confidence            9999987663333321  2344466788999998 667788888787888886553221       011111110     


Q ss_pred             --------------cccEEEeCCCCceEEec-cCC-------CCEEEEEEcCCCeEEEEECCCcEEEEeCCC-----C--
Q 006825          548 --------------VPETVFALSDKPICSFQ-GHL-------DDVLDLSWSKSQHLLSSSMDKTVRLWHLSS-----K--  598 (630)
Q Consensus       548 --------------~~~~Vwdlsgk~l~tL~-GHs-------~~V~sLafSPd~~LaSgS~DgtVrIWDl~t-----g--  598 (630)
                                    .+..+|++-.+.+..|+ .|.       ..|.+++|..|..++|||.|..|+||.+..     |  
T Consensus       252 ~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~~v~tGSD~~~i~~WklP~~~ds~G~~  331 (609)
T KOG4227|consen  252 WSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDDYTVATGSDHWGIHIWKLPRANDSYGFT  331 (609)
T ss_pred             eCCCCCeehhhhccCCCEEeeeecccceeEeccCCCCcceeeeeeeeeeeecceeeeccCcccceEEEecCCCccccCcc
Confidence                          11234444222222332 132       246788898886799999999999998853     1  


Q ss_pred             ----------------cEEEEEe-cCCceEEEE-cCCCcEEEEecc
Q 006825          599 ----------------TCLKIFS-HSDYDISLV-DRLMLRFAYGAF  626 (630)
Q Consensus       599 ----------------~~l~t~~-H~~~V~sVa-s~~~~~lAsgs~  626 (630)
                                      ..+..++ |...|..|. ++-...|.+.+.
T Consensus       332 ~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGV  377 (609)
T KOG4227|consen  332 QIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHNNLLVSSGV  377 (609)
T ss_pred             ccCcchhhCchhheecceeEEEecccccccceeecCCcceEeccch
Confidence                            1233445 888888888 666666655543

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.38  E-value=6.4e-10  Score=116.34  Aligned_cols=202  Identities=17%  Similarity=0.129  Sum_probs=136.0

Q ss_pred             CccEecccCCCCceeEEecCC--ccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCcEEEE
Q 006825          358 SFDLNNNGSSGGGMKSKKKGS--WFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQ  435 (630)
Q Consensus       358 ~tvr~vWD~~tG~~~~~lk~g--H~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~Vri  435 (630)
                      ..+- |+|+++-+.++++..-  |...+.+++++..+.|+|--                    .       ...-|.|.+
T Consensus       106 e~Iy-IydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp--------------------~-------s~t~GdV~l  157 (391)
T KOG2110|consen  106 ESIY-IYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYP--------------------G-------STTSGDVVL  157 (391)
T ss_pred             ccEE-EEecccceeehhhhccCCCccceEeeccCCCCceEEec--------------------C-------CCCCceEEE
Confidence            3477 9999999999988732  44445433333444466521                    0       112577999


Q ss_pred             EeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCc-EEEEECcCCceeeeeecccccCc-ccceEEEEECC
Q 006825          436 YGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCV-IHVWQVVESERKGELLEKQEDGH-LNMLLLANGSP  513 (630)
Q Consensus       436 Wd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~Dgt-IrVWDl~tg~~~~~l~~~~~~gh-~~~V~svafSp  513 (630)
                      ||..+-     ..+.++.+|.+.|.+|+|+++|.+|||||+-|| |||+.+.+|+.+.++.    .|. ...|.+++|+|
T Consensus       158 ~d~~nl-----~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFR----RG~~~~~IySL~Fs~  228 (391)
T KOG2110|consen  158 FDTINL-----QPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFR----RGTYPVSIYSLSFSP  228 (391)
T ss_pred             EEcccc-----eeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeee----CCceeeEEEEEEECC
Confidence            988543     467889999999999999999999999999998 7899999999999974    333 45688999999


Q ss_pred             CCCEEEEeeCCCeeeeecccccccccccccC------ccc-------ccc---EEEeCCCCceEEeccCCCCE-EEEEEc
Q 006825          514 EPTSLSPKHLDNHLEKKRRGRSINRKSLSLD------HMV-------VPE---TVFALSDKPICSFQGHLDDV-LDLSWS  576 (630)
Q Consensus       514 dg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d------~~i-------~~~---~Vwdlsgk~l~tL~GHs~~V-~sLafS  576 (630)
                      ++++|++.+..++|.+++.........-++.      ..+       .|.   .+|+.. +...+.+...... ..+++.
T Consensus       229 ds~~L~~sS~TeTVHiFKL~~~~~~~~~~p~~~~~~~~~~sk~~~sylps~V~~~~~~~-R~FAt~~l~~s~~~~~~~l~  307 (391)
T KOG2110|consen  229 DSQFLAASSNTETVHIFKLEKVSNNPPESPTAGTSWFGKVSKAATSYLPSQVSSVLDQS-RKFATAKLPESGRKNICSLS  307 (391)
T ss_pred             CCCeEEEecCCCeEEEEEecccccCCCCCCCCCCcccchhhhhhhhhcchhhhhhhhhc-cceeEEEccCCCccceEEee
Confidence            9999999999999998887663321111110      000       011   223321 2222222222222 334444


Q ss_pred             --CC-CeEEEEECCCcEEEEeCCC
Q 006825          577 --KS-QHLLSSSMDKTVRLWHLSS  597 (630)
Q Consensus       577 --Pd-~~LaSgS~DgtVrIWDl~t  597 (630)
                        +. .++..++.||.+..+.+.-
T Consensus       308 ~~~~~~~v~vas~dG~~y~y~l~~  331 (391)
T KOG2110|consen  308 SIQKIPRVLVASYDGHLYSYRLPP  331 (391)
T ss_pred             ccCCCCEEEEEEcCCeEEEEEcCC
Confidence              34 8899999999999998753

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.36  E-value=5.8e-11  Score=131.10  Aligned_cols=204  Identities=18%  Similarity=0.078  Sum_probs=135.1

Q ss_pred             ecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCcEE
Q 006825          354 GNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRV  433 (630)
Q Consensus       354 gS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~V  433 (630)
                      ++.+..+. +||...+. .+.+. .|...|.+++|||||++++..+.+                          ..+..|
T Consensus       180 ~~~~~~i~-i~d~dg~~-~~~lt-~~~~~v~~p~wSPDG~~la~~s~~--------------------------~~~~~i  230 (429)
T PRK01742        180 GSQPYEVR-VADYDGFN-QFIVN-RSSQPLMSPAWSPDGSKLAYVSFE--------------------------NKKSQL  230 (429)
T ss_pred             CCceEEEE-EECCCCCC-ceEec-cCCCccccceEcCCCCEEEEEEec--------------------------CCCcEE
Confidence            34467888 99985444 56666 788899999999999988754322                          124579


Q ss_pred             EEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEe-CCCcEEEE--ECcCCceeeeeecccccCcccceEEEE
Q 006825          434 RQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAG-EDCVIHVW--QVVESERKGELLEKQEDGHLNMLLLAN  510 (630)
Q Consensus       434 riWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS-~DgtIrVW--Dl~tg~~~~~l~~~~~~gh~~~V~sva  510 (630)
                      ++||+.+++..   .+..+.+|.   ..++|+|||++|+.++ .++.+.||  |+.++.. ..+     ..+...+....
T Consensus       231 ~i~dl~tg~~~---~l~~~~g~~---~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~-~~l-----t~~~~~~~~~~  298 (429)
T PRK01742        231 VVHDLRSGARK---VVASFRGHN---GAPAFSPDGSRLAFASSKDGVLNIYVMGANGGTP-SQL-----TSGAGNNTEPS  298 (429)
T ss_pred             EEEeCCCCceE---EEecCCCcc---CceeECCCCCEEEEEEecCCcEEEEEEECCCCCe-Eee-----ccCCCCcCCEE
Confidence            99999776431   233455554   4689999999888765 68876666  5555543 332     34555677899


Q ss_pred             ECCCCCEEEEee-CCCeeeeecccccccccccccCccccccEEEeC--CCCceEEeccCCCCEEEEEEcCC-CeEEEEEC
Q 006825          511 GSPEPTSLSPKH-LDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL--SDKPICSFQGHLDDVLDLSWSKS-QHLLSSSM  586 (630)
Q Consensus       511 fSpdg~~lasgs-~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl--sgk~l~tL~GHs~~V~sLafSPd-~~LaSgS~  586 (630)
                      |+|||+.|+..+ .++..                       .||.+  .+.....+ +|..  ..++|+|+ ++|+..+.
T Consensus       299 wSpDG~~i~f~s~~~g~~-----------------------~I~~~~~~~~~~~~l-~~~~--~~~~~SpDG~~ia~~~~  352 (429)
T PRK01742        299 WSPDGQSILFTSDRSGSP-----------------------QVYRMSASGGGASLV-GGRG--YSAQISADGKTLVMING  352 (429)
T ss_pred             ECCCCCEEEEEECCCCCc-----------------------eEEEEECCCCCeEEe-cCCC--CCccCCCCCCEEEEEcC
Confidence            999999877655 45555                       45544  33333333 4443  46789999 88888877


Q ss_pred             CCcEEEEeCCCCcEEEEEecCCceEEEE-cCCCcEEEEecc
Q 006825          587 DKTVRLWHLSSKTCLKIFSHSDYDISLV-DRLMLRFAYGAF  626 (630)
Q Consensus       587 DgtVrIWDl~tg~~l~t~~H~~~V~sVa-s~~~~~lAsgs~  626 (630)
                      ++ |.+||+.++++.....+. ....+. +|++..+++++.
T Consensus       353 ~~-i~~~Dl~~g~~~~lt~~~-~~~~~~~sPdG~~i~~~s~  391 (429)
T PRK01742        353 DN-VVKQDLTSGSTEVLSSTF-LDESPSISPNGIMIIYSST  391 (429)
T ss_pred             CC-EEEEECCCCCeEEecCCC-CCCCceECCCCCEEEEEEc
Confidence            66 555999998765433321 223444 778877777653

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.34  E-value=2.3e-11  Score=121.04  Aligned_cols=155  Identities=21%  Similarity=0.282  Sum_probs=112.1

Q ss_pred             EEecCCcEEEEEeCCCC-----cccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCce---eeeeec
Q 006825          425 FHGQERVRVRQYGKSCK-----DLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESER---KGELLE  496 (630)
Q Consensus       425 ~Sgs~Dg~VriWd~~~~-----el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~---~~~l~~  496 (630)
                      +.|..+|.|.+..++.-     +......+-.+++|.++|+.|+|.  ..+|++|+ ||.|+-|..+....   .+.+..
T Consensus        26 ~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~W~E~~es~~~K~lwe  102 (325)
T KOG0649|consen   26 FAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWEWNEEEESLATKRLWE  102 (325)
T ss_pred             EEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeecc-CceEEEeeehhhhhhccchhhhh
Confidence            45555666666654321     111222345668999999999997  55788877 59999998754332   111111


Q ss_pred             ccccCcc-----cceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeC-CCCceEEeccCCCCE
Q 006825          497 KQEDGHL-----NMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDV  570 (630)
Q Consensus       497 ~~~~gh~-----~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL~GHs~~V  570 (630)
                      .....|.     ..|.++-..|...-++.++.|+.+                       .-|++ +|+..++|+||++.|
T Consensus       103 ~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~-----------------------y~~dlE~G~i~r~~rGHtDYv  159 (325)
T KOG0649|consen  103 VKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVI-----------------------YQVDLEDGRIQREYRGHTDYV  159 (325)
T ss_pred             hcCccccCcccCCccceeEeccCCCcEEEecCCeEE-----------------------EEEEecCCEEEEEEcCCccee
Confidence            1112222     346788888887777777789988                       77888 899999999999999


Q ss_pred             EEEEEcCC-CeEEEEECCCcEEEEeCCCCcEEEEEe
Q 006825          571 LDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS  605 (630)
Q Consensus       571 ~sLafSPd-~~LaSgS~DgtVrIWDl~tg~~l~t~~  605 (630)
                      .+++--.. ..++||+.||++||||+++++++.++.
T Consensus       160 H~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie  195 (325)
T KOG0649|consen  160 HSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIE  195 (325)
T ss_pred             eeeeecccCcceeecCCCccEEEEeccccceeEEec
Confidence            99998444 899999999999999999999999885

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.34  E-value=2e-11  Score=133.67  Aligned_cols=202  Identities=14%  Similarity=0.107  Sum_probs=138.7

Q ss_pred             ccceeEEEeec----ceEeecCCCccEecccCCCCc-------eeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccc
Q 006825          339 SPIVQELMRRQ----NVEEGNKDSFDLNNNGSSGGG-------MKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSE  407 (630)
Q Consensus       339 s~~V~~Lafs~----~laSgS~D~tvr~vWD~~tG~-------~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~  407 (630)
                      ...|+.|+|-|    .||.++.|+.|+ +|-+.++.       ....++ +|...|.++-|.|=                
T Consensus       627 gt~vtDl~WdPFD~~rLAVa~ddg~i~-lWr~~a~gl~e~~~tPe~~lt-~h~eKI~slRfHPL----------------  688 (1012)
T KOG1445|consen  627 GTLVTDLHWDPFDDERLAVATDDGQIN-LWRLTANGLPENEMTPEKILT-IHGEKITSLRFHPL----------------  688 (1012)
T ss_pred             CceeeecccCCCChHHeeecccCceEE-EEEeccCCCCcccCCcceeee-cccceEEEEEecch----------------
Confidence            35689999988    799999999999 99886543       344566 89999999999882                


Q ss_pred             cCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcC
Q 006825          408 KGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVE  487 (630)
Q Consensus       408 ~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~t  487 (630)
                                  ..+.+++++.|.+|++||+.+..+     ...|.||++.|..++|||||+.+||.+.||+|+||+-+.
T Consensus       689 ------------AadvLa~asyd~Ti~lWDl~~~~~-----~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs  751 (1012)
T KOG1445|consen  689 ------------AADVLAVASYDSTIELWDLANAKL-----YSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRS  751 (1012)
T ss_pred             ------------hhhHhhhhhccceeeeeehhhhhh-----hheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCC
Confidence                        236688899999999999987653     356899999999999999999999999999999999877


Q ss_pred             CceeeeeecccccCc-ccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeC---CCCceEEe
Q 006825          488 SERKGELLEKQEDGH-LNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL---SDKPICSF  563 (630)
Q Consensus       488 g~~~~~l~~~~~~gh-~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl---sgk~l~tL  563 (630)
                      ++....-    -.+. ...-..|.|.-||+++++.+.|..-.                +.+   .+++.   .+.++.+.
T Consensus       752 ~e~pv~E----g~gpvgtRgARi~wacdgr~viv~Gfdk~Se----------------RQv---~~Y~Aq~l~~~pl~t~  808 (1012)
T KOG1445|consen  752 REQPVYE----GKGPVGTRGARILWACDGRIVIVVGFDKSSE----------------RQV---QMYDAQTLDLRPLYTQ  808 (1012)
T ss_pred             CCCcccc----CCCCccCcceeEEEEecCcEEEEecccccch----------------hhh---hhhhhhhccCCcceee
Confidence            6532210    0111 12233556666888888877665321                001   23332   22333322


Q ss_pred             ccC-CCCEEEEEEcCC--CeEEEEECCCcEEEEeCCCC
Q 006825          564 QGH-LDDVLDLSWSKS--QHLLSSSMDKTVRLWHLSSK  598 (630)
Q Consensus       564 ~GH-s~~V~sLafSPd--~~LaSgS~DgtVrIWDl~tg  598 (630)
                      .-- .-.+.--.+.+|  -+|+||-.|.+|.+|.+-..
T Consensus       809 ~lDvaps~LvP~YD~Ds~~lfltGKGD~~v~~yEv~~e  846 (1012)
T KOG1445|consen  809 VLDVAPSPLVPHYDYDSNVLFLTGKGDRFVNMYEVIYE  846 (1012)
T ss_pred             eecccCccccccccCCCceEEEecCCCceEEEEEecCC
Confidence            100 001111123345  56789999999999998654

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.33  E-value=4.8e-12  Score=142.12  Aligned_cols=225  Identities=19%  Similarity=0.192  Sum_probs=167.2

Q ss_pred             CCCcEEEEeeecCCCceeEEEEcCCCceEeeecceeeecCccceeEEEeec---ceEeecCCCccEecccCCCCceeEEe
Q 006825          299 DNGKEFVVNEIQEDGTWKKVKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKK  375 (630)
Q Consensus       299 ddG~~~~v~e~~~dg~~~~l~dv~TG~~lt~eef~~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~l  375 (630)
                      .+|+.++...   |....++|...|+++|     ..+.||+.-++.+|.+.   .+|++|+|..|| +|-...|..+..+
T Consensus       200 rtg~~Iitgs---dd~lvKiwS~et~~~l-----As~rGhs~ditdlavs~~n~~iaaaS~D~vIr-vWrl~~~~pvsvL  270 (1113)
T KOG0644|consen  200 RTGRYIITGS---DDRLVKIWSMETARCL-----ASCRGHSGDITDLAVSSNNTMIAAASNDKVIR-VWRLPDGAPVSVL  270 (1113)
T ss_pred             cccceEeecC---ccceeeeeeccchhhh-----ccCCCCccccchhccchhhhhhhhcccCceEE-EEecCCCchHHHH
Confidence            3565555433   5567889999999999     99999999999999877   799999999999 9999999999999


Q ss_pred             cCCccCCEEEEEEcCCCCeEEeecCCC-----C----------------------------------------------C
Q 006825          376 KGSWFKSIRTVASSVTGHKERRSSDER-----D----------------------------------------------T  404 (630)
Q Consensus       376 k~gH~~~V~sVAfSpdG~~lasgS~D~-----d----------------------------------------------t  404 (630)
                      + ||++.|+++||+|--    +.++|+     +                                              .
T Consensus       271 r-ghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~  345 (1113)
T KOG0644|consen  271 R-GHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEF  345 (1113)
T ss_pred             h-ccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccCCcccccchh
Confidence            9 999999999999953    233332     0                                              0


Q ss_pred             ccccCCcceEEEeecCCCe---EEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEcc-CCCEEEEEeCCCcE
Q 006825          405 SSEKGGRRSSSATDDSQDV---SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSL-DGRYLASAGEDCVI  480 (630)
Q Consensus       405 ~s~~gh~~~Vsa~~~s~d~---l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSp-DG~~LASgS~DgtI  480 (630)
                      ..+..+...+.++.+..+.   .+++-.+..+.+|++.++.     +.+.+.+|...++.|.|+| +.+...+++.||..
T Consensus       346 ~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~-----l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst  420 (1113)
T KOG0644|consen  346 EQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQ-----LLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGST  420 (1113)
T ss_pred             hHhhhhccceEEEeccccccccceeeeeeeEeeeeecccch-----hhhhhcccccceeeeeecCCCcHhhhhccCCCce
Confidence            0022233333333333222   3444556667778776653     4678899999999999999 77788899999999


Q ss_pred             EEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccc
Q 006825          481 HVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMV  547 (630)
Q Consensus       481 rVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i  547 (630)
                      .|||+..|..++..    +.+| ..+...+|+++|+.++..-.-|.+.+...+.....+....+..+
T Consensus       421 ~iwdi~eg~pik~y----~~gh-~kl~d~kFSqdgts~~lsd~hgql~i~g~gqs~s~k~ak~dqff  482 (1113)
T KOG0644|consen  421 IIWDIWEGIPIKHY----FIGH-GKLVDGKFSQDGTSIALSDDHGQLYILGTGQSKSQKKAKYDQFF  482 (1113)
T ss_pred             EeeecccCCcceee----eccc-ceeeccccCCCCceEecCCCCCceEEeccCCCccccccccceEe
Confidence            99999999887775    3554 55667899999999988877788877766665554444444433

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.32  E-value=8.4e-11  Score=120.65  Aligned_cols=193  Identities=13%  Similarity=0.132  Sum_probs=142.0

Q ss_pred             eeEEEeec---ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEee
Q 006825          342 VQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATD  418 (630)
Q Consensus       342 V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~  418 (630)
                      ..++.|++   +||.|+.|+.+- +||..|...-+.+. +|..+|.+++||+||++|.++                    
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vv-I~D~~T~~iar~ls-aH~~pi~sl~WS~dgr~Llts--------------------   83 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVV-IYDFDTFRIARMLS-AHVRPITSLCWSRDGRKLLTS--------------------   83 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEE-EEEccccchhhhhh-ccccceeEEEecCCCCEeeee--------------------
Confidence            67788988   899999999999 99999988777877 999999999999999988654                    


Q ss_pred             cCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccC-CCEEEEEeCCCcEEEEECcCCceeeeeecc
Q 006825          419 DSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLD-GRYLASAGEDCVIHVWQVVESERKGELLEK  497 (630)
Q Consensus       419 ~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpD-G~~LASgS~DgtIrVWDl~tg~~~~~l~~~  497 (630)
                               +.|-.|.+||+..+.     +++.+. ...+|+.+.|+|- -+.++..=.+..-.+-++..  ....++..
T Consensus        84 ---------S~D~si~lwDl~~gs-----~l~rir-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~--~~h~~Lp~  146 (405)
T KOG1273|consen   84 ---------SRDWSIKLWDLLKGS-----PLKRIR-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSD--PKHSVLPK  146 (405)
T ss_pred             ---------cCCceeEEEeccCCC-----ceeEEE-ccCccceeeeccccCCeEEEEEecCCcEEEEecC--CceeeccC
Confidence                     455679999997775     344444 5689999999993 33333333444455555544  22222211


Q ss_pred             cccCcccc-eEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeC-CCCceEEeccCC-CCEEEEE
Q 006825          498 QEDGHLNM-LLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHL-DDVLDLS  574 (630)
Q Consensus       498 ~~~gh~~~-V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL~GHs-~~V~sLa  574 (630)
                      ...+..+. .....|.+.|++|++|...|.+                       .+++. +-+++..++--+ ..|..+-
T Consensus       147 d~d~dln~sas~~~fdr~g~yIitGtsKGkl-----------------------lv~~a~t~e~vas~rits~~~IK~I~  203 (405)
T KOG1273|consen  147 DDDGDLNSSASHGVFDRRGKYIITGTSKGKL-----------------------LVYDAETLECVASFRITSVQAIKQII  203 (405)
T ss_pred             CCccccccccccccccCCCCEEEEecCcceE-----------------------EEEecchheeeeeeeechheeeeEEE
Confidence            11222222 2234688899999999999988                       56665 557777766544 7788999


Q ss_pred             EcCC-CeEEEEECCCcEEEEeCC
Q 006825          575 WSKS-QHLLSSSMDKTVRLWHLS  596 (630)
Q Consensus       575 fSPd-~~LaSgS~DgtVrIWDl~  596 (630)
                      |+.. .+|+.-+.|..||.++++
T Consensus       204 ~s~~g~~liiNtsDRvIR~ye~~  226 (405)
T KOG1273|consen  204 VSRKGRFLIINTSDRVIRTYEIS  226 (405)
T ss_pred             EeccCcEEEEecCCceEEEEehh
Confidence            9988 899999999999999986

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.31  E-value=2.6e-11  Score=124.73  Aligned_cols=177  Identities=18%  Similarity=0.254  Sum_probs=130.6

Q ss_pred             EEEecCCcEEEEEeCCCCcccceeeeeEecccCcC---EEEEEEccCCCEEEEEeCCCcEEEEEC-cCCcee--eeeecc
Q 006825          424 SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGS---IWSIKFSLDGRYLASAGEDCVIHVWQV-VESERK--GELLEK  497 (630)
Q Consensus       424 l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~---V~sVaFSpDG~~LASgS~DgtIrVWDl-~tg~~~--~~l~~~  497 (630)
                      +++.+.+--|++||..++++...+.   ...|.+.   ..+++|+|||.+|+. |..+.|||+|+ +.|...  ...+..
T Consensus       126 ~a~ssr~~PIh~wdaftG~lraSy~---~ydh~de~taAhsL~Fs~DGeqlfa-GykrcirvFdt~RpGr~c~vy~t~~~  201 (406)
T KOG2919|consen  126 FAVSSRDQPIHLWDAFTGKLRASYR---AYDHQDEYTAAHSLQFSPDGEQLFA-GYKRCIRVFDTSRPGRDCPVYTTVTK  201 (406)
T ss_pred             eeeccccCceeeeeccccccccchh---hhhhHHhhhhheeEEecCCCCeEee-cccceEEEeeccCCCCCCcchhhhhc
Confidence            6777889999999999998754432   2334443   468999999999985 66789999999 444322  111112


Q ss_pred             cccCcccceEEEEECCC-CCEEEEeeCCCeeeeecccccccccccccCccccccEEEeC-CCCceEEeccCCCCEEEEEE
Q 006825          498 QEDGHLNMLLLANGSPE-PTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSW  575 (630)
Q Consensus       498 ~~~gh~~~V~svafSpd-g~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL~GHs~~V~sLaf  575 (630)
                      ...+..+.+.+++|+|- .+.++.++....+                       -|+.- .+.++..+.||.+.|+.|.|
T Consensus       202 ~k~gq~giisc~a~sP~~~~~~a~gsY~q~~-----------------------giy~~~~~~pl~llggh~gGvThL~~  258 (406)
T KOG2919|consen  202 GKFGQKGIISCFAFSPMDSKTLAVGSYGQRV-----------------------GIYNDDGRRPLQLLGGHGGGVTHLQW  258 (406)
T ss_pred             ccccccceeeeeeccCCCCcceeeeccccee-----------------------eeEecCCCCceeeecccCCCeeeEEe
Confidence            23455778899999997 4588888887777                       45554 56889999999999999999


Q ss_pred             cCC-CeEEEEEC-CCcEEEEeCCC-CcEEEEEe-cCC-ceEEEE---cCCCcEEEEecce
Q 006825          576 SKS-QHLLSSSM-DKTVRLWHLSS-KTCLKIFS-HSD-YDISLV---DRLMLRFAYGAFL  627 (630)
Q Consensus       576 SPd-~~LaSgS~-DgtVrIWDl~t-g~~l~t~~-H~~-~V~sVa---s~~~~~lAsgs~~  627 (630)
                      .++ +.|.+|+. |-.|..||++. +..+..+. |.+ .-.-|.   .+.+.+||+|++.
T Consensus       259 ~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~td  318 (406)
T KOG2919|consen  259 CEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTD  318 (406)
T ss_pred             ccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCC
Confidence            999 88888875 88999999986 56666665 654 222333   8899999998543

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.31  E-value=3e-11  Score=130.85  Aligned_cols=239  Identities=15%  Similarity=0.100  Sum_probs=161.8

Q ss_pred             eeeecCccceeEEEeec---ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccccC
Q 006825          333 EMCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKG  409 (630)
Q Consensus       333 ~~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~g  409 (630)
                      ..|.||++.|.+|.|..   .|+|||.|--+. |||.-..+.++.+..||+..|.++.|-|.-.                
T Consensus        44 ~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~i-vWd~~~~KllhsI~TgHtaNIFsvKFvP~tn----------------  106 (758)
T KOG1310|consen   44 AELTGHTGCVNCLEWNADGELLASGSDDTRLI-VWDPFEYKLLHSISTGHTANIFSVKFVPYTN----------------  106 (758)
T ss_pred             hhhccccceecceeecCCCCEEeecCCcceEE-eecchhcceeeeeecccccceeEEeeeccCC----------------
Confidence            56899999999999987   899999999999 9999988888888889999999999999421                


Q ss_pred             CcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccc-----eeeeeEecccCcCEEEEEEccCC-CEEEEEeCCCcEEEE
Q 006825          410 GRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTA-----LYKCQEIQAHNGSIWSIKFSLDG-RYLASAGEDCVIHVW  483 (630)
Q Consensus       410 h~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~-----~~~v~tL~gHt~~V~sVaFSpDG-~~LASgS~DgtIrVW  483 (630)
                                 ...+++|..|..|+++|+....-.+     ......+.-|+..|..|+-.|++ ..+.++++||+||-+
T Consensus       107 -----------nriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQy  175 (758)
T KOG1310|consen  107 -----------NRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQY  175 (758)
T ss_pred             -----------CeEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeee
Confidence                       1226888999999999987421111     11234467799999999999988 899999999999999


Q ss_pred             ECcCCceeeee---e--cccccCcccceEEEEECCC-CCEEEEeeCCCeeeeecccccccccccccCccc--ccc-----
Q 006825          484 QVVESERKGEL---L--EKQEDGHLNMLLLANGSPE-PTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMV--VPE-----  550 (630)
Q Consensus       484 Dl~tg~~~~~l---~--~~~~~gh~~~V~svafSpd-g~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i--~~~-----  550 (630)
                      |++.......-   .  ...+....-...++.++|. ..+|+.|+.|-..+++++.+...  .+..+.+.  .+.     
T Consensus       176 DiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lk--s~~s~~~~~~~pp~~~~c  253 (758)
T KOG1310|consen  176 DIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLK--SFRSDGTMNTCPPKDCRC  253 (758)
T ss_pred             cccCCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhcc--CCCCCccccCCCCcccch
Confidence            99874322110   0  0001122234568899997 67788898888888887533111  11111111  000     


Q ss_pred             -EEEeCCCCceEEecc-CCC---CEEEEEEcCC--CeEEEEECCCcEEEEeCCCCcEEEEE
Q 006825          551 -TVFALSDKPICSFQG-HLD---DVLDLSWSKS--QHLLSSSMDKTVRLWHLSSKTCLKIF  604 (630)
Q Consensus       551 -~Vwdlsgk~l~tL~G-Hs~---~V~sLafSPd--~~LaSgS~DgtVrIWDl~tg~~l~t~  604 (630)
                       .-|.. +.. +...| -..   -++-+.|+|+  .+|++=+.+ .|+++|+..++....+
T Consensus       254 v~yf~p-~hl-kn~~gn~~~~~~~~t~vtfnpNGtElLvs~~gE-hVYlfdvn~~~~~~~y  311 (758)
T KOG1310|consen  254 VRYFSP-GHL-KNSQGNLDRYITCCTYVTFNPNGTELLVSWGGE-HVYLFDVNEDKSPTPY  311 (758)
T ss_pred             hheecC-ccc-cCcccccccceeeeEEEEECCCCcEEEEeeCCe-EEEEEeecCCCCceee
Confidence             11111 000 11111 111   2466889999  566666654 6999999887765544

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.31  E-value=3.3e-11  Score=124.70  Aligned_cols=195  Identities=12%  Similarity=0.135  Sum_probs=155.1

Q ss_pred             eEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCC
Q 006825          351 VEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQER  430 (630)
Q Consensus       351 laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~D  430 (630)
                      +|.+-.-+++| ++|..||+.+..++ +|...++.|+|..+                           +++.++.+++.|
T Consensus        43 vav~lSngsv~-lyd~~tg~~l~~fk-~~~~~~N~vrf~~~---------------------------ds~h~v~s~ssD   93 (376)
T KOG1188|consen   43 VAVSLSNGSVR-LYDKGTGQLLEEFK-GPPATTNGVRFISC---------------------------DSPHGVISCSSD   93 (376)
T ss_pred             EEEEecCCeEE-EEeccchhhhheec-CCCCcccceEEecC---------------------------CCCCeeEEeccC
Confidence            56666668999 99999999999999 89988888877653                           145678999999


Q ss_pred             cEEEEEeCCCCcccceeeeeEecccC-cCEEEEEEccCCCEEEEEe----CCCcEEEEECcCCce-eeeeecccccCccc
Q 006825          431 VRVRQYGKSCKDLTALYKCQEIQAHN-GSIWSIKFSLDGRYLASAG----EDCVIHVWQVVESER-KGELLEKQEDGHLN  504 (630)
Q Consensus       431 g~VriWd~~~~el~~~~~v~tL~gHt-~~V~sVaFSpDG~~LASgS----~DgtIrVWDl~tg~~-~~~l~~~~~~gh~~  504 (630)
                      |+||+||++...-   .....+.+|. .+..+++.+-.++.++.|.    .|-.|.+||++..+. ++.+    ...|..
T Consensus        94 G~Vr~wD~Rs~~e---~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~----~eSH~D  166 (376)
T KOG1188|consen   94 GTVRLWDIRSQAE---SARISWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQL----NESHND  166 (376)
T ss_pred             CeEEEEEeecchh---hhheeccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhh----hhhccC
Confidence            9999999976542   2344566777 4678888887888888875    466799999988765 5554    588999


Q ss_pred             ceEEEEECCC-CCEEEEeeCCCeeeeecccccccccccccCccccccEEEeCCC----CceEEeccCCCCEEEEEEcCC-
Q 006825          505 MLLLANGSPE-PTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSD----KPICSFQGHLDDVLDLSWSKS-  578 (630)
Q Consensus       505 ~V~svafSpd-g~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsg----k~l~tL~GHs~~V~sLafSPd-  578 (630)
                      -|+.+.|+|. ..+|++|+.||.|                       .+|++.+    ..+.....|...|.++.|..+ 
T Consensus       167 DVT~lrFHP~~pnlLlSGSvDGLv-----------------------nlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~  223 (376)
T KOG1188|consen  167 DVTQLRFHPSDPNLLLSGSVDGLV-----------------------NLFDTKKDNEEDALLHVINHGSSIHLIGWLSKK  223 (376)
T ss_pred             cceeEEecCCCCCeEEeecccceE-----------------------EeeecCCCcchhhHHHhhcccceeeeeeeecCC
Confidence            9999999997 7899999999999                       6666632    234444568888999999877 


Q ss_pred             -CeEEEEECCCcEEEEeCCCCcEEEEE
Q 006825          579 -QHLLSSSMDKTVRLWHLSSKTCLKIF  604 (630)
Q Consensus       579 -~~LaSgS~DgtVrIWDl~tg~~l~t~  604 (630)
                       +.|.+-+.+.+..+|++..+.+...+
T Consensus       224 ykrI~clTH~Etf~~~ele~~~~~~~~  250 (376)
T KOG1188|consen  224 YKRIMCLTHMETFAIYELEDGSEETWL  250 (376)
T ss_pred             cceEEEEEccCceeEEEccCCChhhcc
Confidence             68999999999999999887655444

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.30  E-value=8.8e-11  Score=125.37  Aligned_cols=184  Identities=17%  Similarity=0.172  Sum_probs=144.0

Q ss_pred             EEEeecCCCe--EEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCC-EEEEEeCCCcEEEEECcCCce
Q 006825          414 SSATDDSQDV--SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGR-YLASAGEDCVIHVWQVVESER  490 (630)
Q Consensus       414 Vsa~~~s~d~--l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~-~LASgS~DgtIrVWDl~tg~~  490 (630)
                      |+++.|.+..  +.+++.|+++++|.+..+...   .++.+.--..+|.+.+|.|+|. .++++|.-..+..||+.+.+.
T Consensus       216 I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~---~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~  292 (514)
T KOG2055|consen  216 ITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNP---KLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKV  292 (514)
T ss_pred             ceEEEecCCCceEEEecCCCcEEEEEecCccCh---hheeeeeccCccceeeecCCCceEEEecccceEEEEeecccccc
Confidence            3344444333  678899999999988765432   4566666778999999999999 999999999999999988765


Q ss_pred             eeeeecccccCcc-cceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeC-CCCceEEeccCCC
Q 006825          491 KGELLEKQEDGHL-NMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLD  568 (630)
Q Consensus       491 ~~~l~~~~~~gh~-~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL~GHs~  568 (630)
                      .+.   ....++. ..+.....+|++.+|+..+..|.|                       .+... +++.+.+++ -.+
T Consensus       293 ~k~---~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I-----------------------~lLhakT~eli~s~K-ieG  345 (514)
T KOG2055|consen  293 TKL---KPPYGVEEKSMERFEVSHDSNFIAIAGNNGHI-----------------------HLLHAKTKELITSFK-IEG  345 (514)
T ss_pred             ccc---cCCCCcccchhheeEecCCCCeEEEcccCceE-----------------------Eeehhhhhhhhheee-ecc
Confidence            433   2234443 456678889999999999999988                       44444 677777775 557


Q ss_pred             CEEEEEEcCC-CeEEEEECCCcEEEEeCCCCcEEEEEecCCce--EEEE-cCCCcEEEEecce
Q 006825          569 DVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYD--ISLV-DRLMLRFAYGAFL  627 (630)
Q Consensus       569 ~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg~~l~t~~H~~~V--~sVa-s~~~~~lAsgs~~  627 (630)
                      .|..++|+.+ ..|+..+.+|.|.+||+....|++.|...+.|  ++++ +.++.++|+|+.-
T Consensus       346 ~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~  408 (514)
T KOG2055|consen  346 VVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDS  408 (514)
T ss_pred             EEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCc
Confidence            7999999988 88999999999999999999999999855555  4555 7888999999753

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.28  E-value=4.8e-10  Score=123.98  Aligned_cols=205  Identities=17%  Similarity=0.032  Sum_probs=132.3

Q ss_pred             CccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCcEEEEEe
Q 006825          358 SFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYG  437 (630)
Q Consensus       358 ~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd  437 (630)
                      .++. +||.. |...+.+. .|...|.+.+|+|||++|+..+.+                          .....|++|+
T Consensus       184 ~~l~-i~D~~-g~~~~~lt-~~~~~v~~p~wSpDg~~la~~s~~--------------------------~~~~~l~~~d  234 (433)
T PRK04922        184 YALQ-VADSD-GYNPQTIL-RSAEPILSPAWSPDGKKLAYVSFE--------------------------RGRSAIYVQD  234 (433)
T ss_pred             EEEE-EECCC-CCCceEee-cCCCccccccCCCCCCEEEEEecC--------------------------CCCcEEEEEE
Confidence            4577 88875 45555566 667789999999999988754322                          1245689999


Q ss_pred             CCCCcccceeeeeEecccCcCEEEEEEccCCCEEE-EEeCCC--cEEEEECcCCceeeeeecccccCcccceEEEEECCC
Q 006825          438 KSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLA-SAGEDC--VIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPE  514 (630)
Q Consensus       438 ~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LA-SgS~Dg--tIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpd  514 (630)
                      +.+++.      +.+..+.+.+.+++|+|||+.|+ +.+.++  .|.+||+.+++.. .+     ..+.......+|+||
T Consensus       235 l~~g~~------~~l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~-~l-----t~~~~~~~~~~~spD  302 (433)
T PRK04922        235 LATGQR------ELVASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLT-RL-----TNHFGIDTEPTWAPD  302 (433)
T ss_pred             CCCCCE------EEeccCCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCCeE-EC-----ccCCCCccceEECCC
Confidence            877642      23444555566889999999775 556665  5999999887643 32     334444567899999


Q ss_pred             CCEEEEeeC-CCeeeeecccccccccccccCccccccEEEeCCCCceEEeccCCCCEEEEEEcCC-CeEEEEECCC---c
Q 006825          515 PTSLSPKHL-DNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDK---T  589 (630)
Q Consensus       515 g~~lasgs~-Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL~GHs~~V~sLafSPd-~~LaSgS~Dg---t  589 (630)
                      |+.|+..+. ++...+                     .++++.+.....+..+......++|+|+ ++|+..+.++   .
T Consensus       303 G~~l~f~sd~~g~~~i---------------------y~~dl~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~  361 (433)
T PRK04922        303 GKSIYFTSDRGGRPQI---------------------YRVAASGGSAERLTFQGNYNARASVSPDGKKIAMVHGSGGQYR  361 (433)
T ss_pred             CCEEEEEECCCCCceE---------------------EEEECCCCCeEEeecCCCCccCEEECCCCCEEEEEECCCCcee
Confidence            998887754 232211                     3444433333333333344557899999 7877665443   6


Q ss_pred             EEEEeCCCCcEEEEEecCCceEEEE-cCCCcEEEEec
Q 006825          590 VRLWHLSSKTCLKIFSHSDYDISLV-DRLMLRFAYGA  625 (630)
Q Consensus       590 VrIWDl~tg~~l~t~~H~~~V~sVa-s~~~~~lAsgs  625 (630)
                      |.+||+.+++.. .+.+...+.... ++++..+++.+
T Consensus       362 I~v~d~~~g~~~-~Lt~~~~~~~p~~spdG~~i~~~s  397 (433)
T PRK04922        362 IAVMDLSTGSVR-TLTPGSLDESPSFAPNGSMVLYAT  397 (433)
T ss_pred             EEEEECCCCCeE-ECCCCCCCCCceECCCCCEEEEEE
Confidence            999999888755 444433334445 77777666543

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.27  E-value=1.1e-09  Score=112.68  Aligned_cols=219  Identities=15%  Similarity=0.152  Sum_probs=150.5

Q ss_pred             CccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCC----------------CCccccCCcceEEEeecCC
Q 006825          358 SFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDER----------------DTSSEKGGRRSSSATDDSQ  421 (630)
Q Consensus       358 ~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~----------------dt~s~~gh~~~Vsa~~~s~  421 (630)
                      ..+. |||=...+++.++.  ....|++|.++++  +|+..-..+                ++..   ..+..+++....
T Consensus        75 Nkvi-IWDD~k~~~i~el~--f~~~I~~V~l~r~--riVvvl~~~I~VytF~~n~k~l~~~et~~---NPkGlC~~~~~~  146 (346)
T KOG2111|consen   75 NKVI-IWDDLKERCIIELS--FNSEIKAVKLRRD--RIVVVLENKIYVYTFPDNPKLLHVIETRS---NPKGLCSLCPTS  146 (346)
T ss_pred             ceEE-EEecccCcEEEEEE--eccceeeEEEcCC--eEEEEecCeEEEEEcCCChhheeeeeccc---CCCceEeecCCC
Confidence            5677 99977788888776  7889999999885  444433332                2222   122245554444


Q ss_pred             Ce---EEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCc-EEEEECcCCceeeeeecc
Q 006825          422 DV---SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCV-IHVWQVVESERKGELLEK  497 (630)
Q Consensus       422 d~---l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~Dgt-IrVWDl~tg~~~~~l~~~  497 (630)
                      ..   .+-|-..|.|++-|+...+..   ....+.+|...|.||+.+.+|.+|||+|..|| |||||..+|+.+.++.  
T Consensus       147 ~k~~LafPg~k~GqvQi~dL~~~~~~---~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~R--  221 (346)
T KOG2111|consen  147 NKSLLAFPGFKTGQVQIVDLASTKPN---APSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELR--  221 (346)
T ss_pred             CceEEEcCCCccceEEEEEhhhcCcC---CceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeee--
Confidence            33   345567799999998755431   23578999999999999999999999999999 8999999999999974  


Q ss_pred             cccCc-ccceEEEEECCCCCEEEEeeCCCeeeeecccccc-ccc---ccccCccccccEEEeCCCCceEEeccCCCCEEE
Q 006825          498 QEDGH-LNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSI-NRK---SLSLDHMVVPETVFALSDKPICSFQGHLDDVLD  572 (630)
Q Consensus       498 ~~~gh-~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~-~~~---s~s~d~~i~~~~Vwdlsgk~l~tL~GHs~~V~s  572 (630)
                        .|. ...|.+++|+|+..+++++++.|++.+....... ...   +.+..+.+.+.. ++ +...+..+.-..+...-
T Consensus       222 --RG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~~~~~~~~SSl~~~~~~lpky-~~-S~wS~~~f~l~~~~~~~  297 (346)
T KOG2111|consen  222 --RGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDTENTEDESSSLSFKRLVLPKY-FS-SEWSFAKFQLPQGTQCI  297 (346)
T ss_pred             --cCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeecCCCCccccccccccccccchh-cc-cceeEEEEEccCCCcEE
Confidence              333 3568999999999999999999999877755422 111   111122122211 11 11233344444567778


Q ss_pred             EEEcCC-CeEEEEECCCcEEEE
Q 006825          573 LSWSKS-QHLLSSSMDKTVRLW  593 (630)
Q Consensus       573 LafSPd-~~LaSgS~DgtVrIW  593 (630)
                      ++|-.+ +.++..+.||+-+=+
T Consensus       298 ~~fg~~~nsvi~i~~Dgsy~k~  319 (346)
T KOG2111|consen  298 IAFGSETNTVIAICADGSYYKF  319 (346)
T ss_pred             EEecCCCCeEEEEEeCCcEEEE
Confidence            889887 888888899886533

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.26  E-value=3.7e-10  Score=129.88  Aligned_cols=195  Identities=13%  Similarity=0.051  Sum_probs=138.1

Q ss_pred             ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecC
Q 006825          350 NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQE  429 (630)
Q Consensus       350 ~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~  429 (630)
                      .|.+++.=+.|| |||+..-...+.+..+-...|+++  |++                          -...+.++.|-.
T Consensus      1179 ~Ll~tGd~r~IR-IWDa~~E~~~~diP~~s~t~vTaL--S~~--------------------------~~~gn~i~AGfa 1229 (1387)
T KOG1517|consen 1179 HLLVTGDVRSIR-IWDAHKEQVVADIPYGSSTLVTAL--SAD--------------------------LVHGNIIAAGFA 1229 (1387)
T ss_pred             eEEecCCeeEEE-EEecccceeEeecccCCCccceee--ccc--------------------------ccCCceEEEeec
Confidence            566666678899 999987666655543433333322  111                          112244789999


Q ss_pred             CcEEEEEeCCCCcccceeeeeEecccCcC--EEEEEEccCCC-EEEEEeCCCcEEEEECcCCceeeeeecccccCcccce
Q 006825          430 RVRVRQYGKSCKDLTALYKCQEIQAHNGS--IWSIKFSLDGR-YLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNML  506 (630)
Q Consensus       430 Dg~VriWd~~~~el~~~~~v~tL~gHt~~--V~sVaFSpDG~-~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V  506 (630)
                      ||.||+||.......  ..+...+.|+..  |..+.+.+.|- .|++|+.||.|++||++.......+...........+
T Consensus      1230 DGsvRvyD~R~a~~d--s~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~l 1307 (1387)
T KOG1517|consen 1230 DGSVRVYDRRMAPPD--SLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSAL 1307 (1387)
T ss_pred             CCceEEeecccCCcc--ccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccc
Confidence            999999999766443  246678899998  99999999765 4999999999999999875322222111111112248


Q ss_pred             EEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeCCCCceEEeccC-------CCCEEEEEEcCC-
Q 006825          507 LLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGH-------LDDVLDLSWSKS-  578 (630)
Q Consensus       507 ~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL~GH-------s~~V~sLafSPd-  578 (630)
                      +++..|+...++|+|+. +.|                       +||++.|+.+..++-+       ...+.||+|+|- 
T Consensus      1308 Tal~VH~hapiiAsGs~-q~i-----------------------kIy~~~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~ 1363 (1387)
T KOG1517|consen 1308 TALTVHEHAPIIASGSA-QLI-----------------------KIYSLSGEQLNIIKYNPGFMGQRIGSVSCLAFHPHR 1363 (1387)
T ss_pred             eeeeeccCCCeeeecCc-ceE-----------------------EEEecChhhhcccccCcccccCcCCCcceeeecchh
Confidence            89999999999999987 777                       7777777666555432       245799999998 


Q ss_pred             CeEEEEECCCcEEEEeCCCCc
Q 006825          579 QHLLSSSMDKTVRLWHLSSKT  599 (630)
Q Consensus       579 ~~LaSgS~DgtVrIWDl~tg~  599 (630)
                      -+||.|+.|.+|.||-....+
T Consensus      1364 ~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1364 LLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred             HhhhhccCCceEEEeecCCcC
Confidence            788999999999999876543

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.26  E-value=7.7e-11  Score=127.48  Aligned_cols=169  Identities=22%  Similarity=0.259  Sum_probs=128.4

Q ss_pred             CeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccC
Q 006825          422 DVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDG  501 (630)
Q Consensus       422 d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~g  501 (630)
                      +.++-.+.||++.+.....+      .-..+.+|.++|.+-.|+|||.-|+|+|+||.||+|.-. |-...+     ...
T Consensus        76 d~~~i~s~DGkf~il~k~~r------VE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrs-GMLRSt-----l~Q  143 (737)
T KOG1524|consen   76 DTLLICSNDGRFVILNKSAR------VERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRS-GMLRST-----VVQ  143 (737)
T ss_pred             ceEEEEcCCceEEEecccch------hhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEecc-chHHHH-----Hhh
Confidence            45777888999999987544      234578999999999999999999999999999999853 332222     245


Q ss_pred             cccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeCCCCceEEeccCCCCEEEEEEcCC-Ce
Q 006825          502 HLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QH  580 (630)
Q Consensus       502 h~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL~GHs~~V~sLafSPd-~~  580 (630)
                      ....|+|++|.|+..-++.+- .+++.++...                      ....+-..+.|.+-|.++.|++. .+
T Consensus       144 ~~~~v~c~~W~p~S~~vl~c~-g~h~~IKpL~----------------------~n~k~i~WkAHDGiiL~~~W~~~s~l  200 (737)
T KOG1524|consen  144 NEESIRCARWAPNSNSIVFCQ-GGHISIKPLA----------------------ANSKIIRWRAHDGLVLSLSWSTQSNI  200 (737)
T ss_pred             cCceeEEEEECCCCCceEEec-CCeEEEeecc----------------------cccceeEEeccCcEEEEeecCccccc
Confidence            567899999999977777663 3344221111                      12233456789999999999998 99


Q ss_pred             EEEEECCCcEEEEeCCCCcEEEEEe-cCCceEEEE-cCCCcEEEEecce
Q 006825          581 LLSSSMDKTVRLWHLSSKTCLKIFS-HSDYDISLV-DRLMLRFAYGAFL  627 (630)
Q Consensus       581 LaSgS~DgtVrIWDl~tg~~l~t~~-H~~~V~sVa-s~~~~~lAsgs~~  627 (630)
                      ++||+.|-..+|||.. |+.+.+-. |..+|++|+ .|+ ..++.+++.
T Consensus       201 I~sgGED~kfKvWD~~-G~~Lf~S~~~ey~ITSva~npd-~~~~v~S~n  247 (737)
T KOG1524|consen  201 IASGGEDFRFKIWDAQ-GANLFTSAAEEYAITSVAFNPE-KDYLLWSYN  247 (737)
T ss_pred             eeecCCceeEEeeccc-CcccccCChhccceeeeeeccc-cceeeeeee
Confidence            9999999999999964 66676666 999999999 777 556666543

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.25  E-value=2.2e-09  Score=118.65  Aligned_cols=215  Identities=9%  Similarity=-0.035  Sum_probs=136.8

Q ss_pred             eeecCccceeEEEeec---ceEeec---CCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccc
Q 006825          334 MCVGHSPIVQELMRRQ---NVEEGN---KDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSE  407 (630)
Q Consensus       334 ~l~GHs~~V~~Lafs~---~laSgS---~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~  407 (630)
                      .+..+...+...+|+|   .|+-.+   .+..+. +|++.+|+.....  .+.+.+.+++|||||++|+....       
T Consensus       193 ~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~-i~dl~~G~~~~l~--~~~~~~~~~~~SPDG~~La~~~~-------  262 (429)
T PRK03629        193 VVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALV-IQTLANGAVRQVA--SFPRHNGAPAFSPDGSKLAFALS-------  262 (429)
T ss_pred             EeecCCCceeeeEEcCCCCEEEEEEecCCCcEEE-EEECCCCCeEEcc--CCCCCcCCeEECCCCCEEEEEEc-------
Confidence            3445666788899998   454333   345677 8999888654322  22233456899999998863211       


Q ss_pred             cCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCC-CcEEEE--E
Q 006825          408 KGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGED-CVIHVW--Q  484 (630)
Q Consensus       408 ~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~D-gtIrVW--D  484 (630)
                                         ......|++||..++++      ..+..+...+....|+|||+.|+..+.+ +..+||  +
T Consensus       263 -------------------~~g~~~I~~~d~~tg~~------~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d  317 (429)
T PRK03629        263 -------------------KTGSLNLYVMDLASGQI------RQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVN  317 (429)
T ss_pred             -------------------CCCCcEEEEEECCCCCE------EEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEE
Confidence                               01223589999987643      3444555678899999999988877754 455555  6


Q ss_pred             CcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCC---eeeeecccccccccccccCccccccEEEeCCCCceE
Q 006825          485 VVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDN---HLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPIC  561 (630)
Q Consensus       485 l~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg---~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~  561 (630)
                      +.++.. ..+     ..+........|+|||++|+..+.++   .|                       .+|++.+..+.
T Consensus       318 ~~~g~~-~~l-----t~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I-----------------------~~~dl~~g~~~  368 (429)
T PRK03629        318 INGGAP-QRI-----TWEGSQNQDADVSSDGKFMVMVSSNGGQQHI-----------------------AKQDLATGGVQ  368 (429)
T ss_pred             CCCCCe-EEe-----ecCCCCccCEEECCCCCEEEEEEccCCCceE-----------------------EEEECCCCCeE
Confidence            655543 232     12223345688999999988765432   22                       56676444444


Q ss_pred             EeccCCCCEEEEEEcCC-CeEEEEECCCc---EEEEeCCCCcEEEEEe-cCCceEEEE
Q 006825          562 SFQGHLDDVLDLSWSKS-QHLLSSSMDKT---VRLWHLSSKTCLKIFS-HSDYDISLV  614 (630)
Q Consensus       562 tL~GHs~~V~sLafSPd-~~LaSgS~Dgt---VrIWDl~tg~~l~t~~-H~~~V~sVa  614 (630)
                      .+... .......|+|| .+|+.++.|+.   +.+|++ +|+..+.+. |.+.+...+
T Consensus       369 ~Lt~~-~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~-~G~~~~~l~~~~~~~~~p~  424 (429)
T PRK03629        369 VLTDT-FLDETPSIAPNGTMVIYSSSQGMGSVLNLVST-DGRFKARLPATDGQVKFPA  424 (429)
T ss_pred             EeCCC-CCCCCceECCCCCEEEEEEcCCCceEEEEEEC-CCCCeEECccCCCCcCCcc
Confidence            55432 23456889999 88998888875   667777 465566665 777666555

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.25  E-value=9e-11  Score=127.19  Aligned_cols=118  Identities=25%  Similarity=0.343  Sum_probs=100.7

Q ss_pred             cCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccc
Q 006825          455 HNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGR  534 (630)
Q Consensus       455 Ht~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~  534 (630)
                      -++.|...+|+|||++||+.|+||.+||+|..+.+.+..     .....+...|++|+|||++|++|+.|..|       
T Consensus       289 ~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~-----mkSYFGGLLCvcWSPDGKyIvtGGEDDLV-------  356 (636)
T KOG2394|consen  289 GEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGV-----MKSYFGGLLCVCWSPDGKYIVTGGEDDLV-------  356 (636)
T ss_pred             ccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHH-----HHhhccceEEEEEcCCccEEEecCCcceE-------
Confidence            345899999999999999999999999999987765544     35566889999999999999999999999       


Q ss_pred             cccccccccCccccccEEEeC-CCCceEEeccCCCCEEEEEEcC------------------------------------
Q 006825          535 SINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSWSK------------------------------------  577 (630)
Q Consensus       535 ~~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL~GHs~~V~sLafSP------------------------------------  577 (630)
                                      .||.+ .++.++.=+||..+|..|+|.|                                    
T Consensus       357 ----------------tVwSf~erRVVARGqGHkSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~~S~~  420 (636)
T KOG2394|consen  357 ----------------TVWSFEERRVVARGQGHKSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANGTGSAE  420 (636)
T ss_pred             ----------------EEEEeccceEEEeccccccceeeEeecccccccccccccccccccccchhcccccccCCCCCcC
Confidence                            88988 6677888899999999999982                                    


Q ss_pred             ------------C-CeEEEEECCCcEEEEeCCCCcE
Q 006825          578 ------------S-QHLLSSSMDKTVRLWHLSSKTC  600 (630)
Q Consensus       578 ------------d-~~LaSgS~DgtVrIWDl~tg~~  600 (630)
                                  . -.|.|.+.|-.+.|||+.....
T Consensus       421 ~~~~s~~~~~~~v~YRfGSVGqDTqlcLWDlteD~L  456 (636)
T KOG2394|consen  421 GCPLSSFNRINSVTYRFGSVGQDTQLCLWDLTEDVL  456 (636)
T ss_pred             CCcccccccccceEEEeecccccceEEEEecchhhc
Confidence                        0 1577889999999999976543

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.23  E-value=1.3e-09  Score=120.47  Aligned_cols=204  Identities=11%  Similarity=-0.023  Sum_probs=136.6

Q ss_pred             CccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCcEEEEEe
Q 006825          358 SFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYG  437 (630)
Q Consensus       358 ~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd  437 (630)
                      ..+. +||.. |...+.+. .|...|.+.+|+|||++|+..+..                          ..+..|++|+
T Consensus       182 ~~l~-~~d~d-g~~~~~lt-~~~~~v~~p~wSpDG~~lay~s~~--------------------------~g~~~i~~~d  232 (435)
T PRK05137        182 KRLA-IMDQD-GANVRYLT-DGSSLVLTPRFSPNRQEITYMSYA--------------------------NGRPRVYLLD  232 (435)
T ss_pred             eEEE-EECCC-CCCcEEEe-cCCCCeEeeEECCCCCEEEEEEec--------------------------CCCCEEEEEE
Confidence            3555 67764 55556666 788899999999999988754322                          1245799999


Q ss_pred             CCCCcccceeeeeEecccCcCEEEEEEccCCCEEE-EEeCCCc--EEEEECcCCceeeeeecccccCcccceEEEEECCC
Q 006825          438 KSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLA-SAGEDCV--IHVWQVVESERKGELLEKQEDGHLNMLLLANGSPE  514 (630)
Q Consensus       438 ~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LA-SgS~Dgt--IrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpd  514 (630)
                      +.+++.      +.+..+.+.+...+|+|||+.|+ +.+.++.  |.+||+.++... .+     ..+........|+||
T Consensus       233 l~~g~~------~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~-~L-----t~~~~~~~~~~~spD  300 (435)
T PRK05137        233 LETGQR------ELVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTT-RL-----TDSPAIDTSPSYSPD  300 (435)
T ss_pred             CCCCcE------EEeecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCceE-Ec-----cCCCCccCceeEcCC
Confidence            987642      34566777888999999998765 6666666  667788776543 32     334445667899999


Q ss_pred             CCEEEEeeC-CCeeeeecccccccccccccCccccccEEEeCCCCceEEeccCCCCEEEEEEcCC-CeEEEEECC---Cc
Q 006825          515 PTSLSPKHL-DNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMD---KT  589 (630)
Q Consensus       515 g~~lasgs~-Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL~GHs~~V~sLafSPd-~~LaSgS~D---gt  589 (630)
                      |+.|+..+. ++...+                     .++++.+..+..+..+...+....|+|+ ++|+..+.+   ..
T Consensus       301 G~~i~f~s~~~g~~~I---------------------y~~d~~g~~~~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~  359 (435)
T PRK05137        301 GSQIVFESDRSGSPQL---------------------YVMNADGSNPRRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFS  359 (435)
T ss_pred             CCEEEEEECCCCCCeE---------------------EEEECCCCCeEEeecCCCcccCeEECCCCCEEEEEEcCCCceE
Confidence            998887653 222110                     5566666555666545566778899999 888776654   36


Q ss_pred             EEEEeCCCCcEEEEEecCCceEEEE-cCCCcEEEEe
Q 006825          590 VRLWHLSSKTCLKIFSHSDYDISLV-DRLMLRFAYG  624 (630)
Q Consensus       590 VrIWDl~tg~~l~t~~H~~~V~sVa-s~~~~~lAsg  624 (630)
                      |.+||+.++. .+.+.+...+..+. +|++..+++.
T Consensus       360 i~~~d~~~~~-~~~lt~~~~~~~p~~spDG~~i~~~  394 (435)
T PRK05137        360 IGVMKPDGSG-ERILTSGFLVEGPTWAPNGRVIMFF  394 (435)
T ss_pred             EEEEECCCCc-eEeccCCCCCCCCeECCCCCEEEEE
Confidence            8888986554 34444333344455 7777776654

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.23  E-value=2e-09  Score=122.46  Aligned_cols=254  Identities=16%  Similarity=0.116  Sum_probs=171.1

Q ss_pred             eeeecCccceeEEEeec---ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCC------
Q 006825          333 EMCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERD------  403 (630)
Q Consensus       333 ~~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~d------  403 (630)
                      ..+.=|...|..|+|++   +|.||++.+.+- +|-++|++. +-|. .-...|..+++|||+.+.+..-.|..      
T Consensus       245 t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv-~Wq~~T~~k-qfLP-RLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~  321 (792)
T KOG1963|consen  245 TLLHWHHDEVNSLSFSSDGAYLLSGGREGVLV-LWQLETGKK-QFLP-RLGSPILHIVVSPDSDLYSLVLEDNQIHLIKA  321 (792)
T ss_pred             eEEEecccccceeEEecCCceEeecccceEEE-EEeecCCCc-cccc-ccCCeeEEEEEcCCCCeEEEEecCceEEEEec
Confidence            45577999999999999   899999999998 999999983 2222 45688999999999997666555540      


Q ss_pred             ---------------Ccc-ccCCcceEEEeecCC--CeEEEecCCcEEEEEeCCCCcccceeeeeEe--c------ccCc
Q 006825          404 ---------------TSS-EKGGRRSSSATDDSQ--DVSFHGQERVRVRQYGKSCKDLTALYKCQEI--Q------AHNG  457 (630)
Q Consensus       404 ---------------t~s-~~gh~~~Vsa~~~s~--d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL--~------gHt~  457 (630)
                                     +.+ .++.+...+.+.+.+  ..++-.+.-+.|.+||.-+....  +..+..  .      .|.-
T Consensus       322 ~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i--~~~~v~~~n~~~~~~n~~v  399 (792)
T KOG1963|consen  322 SDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTI--YKLQVCDENYSDGDVNIQV  399 (792)
T ss_pred             cchhhhhhccCccCCCccccccccccceeEEEcCCCCceeecCCCceEEEEecccccee--eeEEEEeecccCCcceeEE
Confidence                           011 222344455555555  23777788999999998766432  222221  1      2344


Q ss_pred             CEEEEEEccCCCEEEEEe--------CCC--cEEEEECcCCceeeeeecccccCcccceEEEEECCC-C-CEEEEeeCCC
Q 006825          458 SIWSIKFSLDGRYLASAG--------EDC--VIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPE-P-TSLSPKHLDN  525 (630)
Q Consensus       458 ~V~sVaFSpDG~~LASgS--------~Dg--tIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpd-g-~~lasgs~Dg  525 (630)
                      .|++++++..|.+++|.-        .||  .+|.|.......-..|.......|...+...++.+. . ..+++++.|+
T Consensus       400 ~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg  479 (792)
T KOG1963|consen  400 GITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDG  479 (792)
T ss_pred             eeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCC
Confidence            688999999999999973        444  477898765554444444445778777766666543 2 3788999999


Q ss_pred             eeeeecccccccccccccCccccccEEEeCCCCceEEeccCCCCEEEEEEcCCCeEEEEECCCcEEEEeCCC-CcEEEE
Q 006825          526 HLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSS-KTCLKI  603 (630)
Q Consensus       526 ~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL~GHs~~V~sLafSPd~~LaSgS~DgtVrIWDl~t-g~~l~t  603 (630)
                      .+++|...........+        ..|..  +.+..|  |..++++++|+.|+.|++.+.|++|.|||..+ .+++.+
T Consensus       480 ~~KiW~~~~~~n~~k~~--------s~W~c--~~i~sy--~k~~i~a~~fs~dGslla~s~~~~Itiwd~~~~~~l~~~  546 (792)
T KOG1963|consen  480 DFKIWVFTDDSNIYKKS--------SNWTC--KAIGSY--HKTPITALCFSQDGSLLAVSFDDTITIWDYDTKNELLCT  546 (792)
T ss_pred             eEEEEEEecccccCcCc--------cceEE--eeeecc--ccCcccchhhcCCCcEEEEecCCEEEEecCCChhhhhcc
Confidence            99776653211110000        12211  122223  88899999999999999999999999999988 443333

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.22  E-value=8.9e-09  Score=109.17  Aligned_cols=256  Identities=9%  Similarity=-0.017  Sum_probs=142.7

Q ss_pred             eEEEEcCCCceEeeecceeeecCccceeEEEeec---ceEee-cCCCccEecccCC-CCceeEEecCCccCCEEEEEEcC
Q 006825          316 KKVKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQ---NVEEG-NKDSFDLNNNGSS-GGGMKSKKKGSWFKSIRTVASSV  390 (630)
Q Consensus       316 ~~l~dv~TG~~lt~eef~~l~GHs~~V~~Lafs~---~laSg-S~D~tvr~vWD~~-tG~~~~~lk~gH~~~V~sVAfSp  390 (630)
                      ..+|++.++..+  +.++++. +.+....|+++|   .|..+ ..++.+. +|++. +|.....-..........++|+|
T Consensus        14 I~~~~~~~~g~l--~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~-~~~~~~~g~l~~~~~~~~~~~p~~i~~~~   89 (330)
T PRK11028         14 IHVWNLNHEGAL--TLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVL-SYRIADDGALTFAAESPLPGSPTHISTDH   89 (330)
T ss_pred             EEEEEECCCCce--eeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEE-EEEECCCCceEEeeeecCCCCceEEEECC
Confidence            456777542222  1223332 224456778887   45444 4577787 89886 44432111112233456799999


Q ss_pred             CCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCE
Q 006825          391 TGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRY  470 (630)
Q Consensus       391 dG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~  470 (630)
                      +|+++..+                            ...++.|.+|++...... ...+..+.++ .....++|+|+|++
T Consensus        90 ~g~~l~v~----------------------------~~~~~~v~v~~~~~~g~~-~~~~~~~~~~-~~~~~~~~~p~g~~  139 (330)
T PRK11028         90 QGRFLFSA----------------------------SYNANCVSVSPLDKDGIP-VAPIQIIEGL-EGCHSANIDPDNRT  139 (330)
T ss_pred             CCCEEEEE----------------------------EcCCCeEEEEEECCCCCC-CCceeeccCC-CcccEeEeCCCCCE
Confidence            99877532                            223677899988532211 0122333332 34667899999998


Q ss_pred             EEEE-eCCCcEEEEECcCCceeeeee-cccccCcccceEEEEECCCCCEEEEeeC-CCeeeeecccccccccccccCccc
Q 006825          471 LASA-GEDCVIHVWQVVESERKGELL-EKQEDGHLNMLLLANGSPEPTSLSPKHL-DNHLEKKRRGRSINRKSLSLDHMV  547 (630)
Q Consensus       471 LASg-S~DgtIrVWDl~tg~~~~~l~-~~~~~gh~~~V~svafSpdg~~lasgs~-Dg~I~i~~~~~~~~~~s~s~d~~i  547 (630)
                      |+++ ..+++|.+||+.+...+.... .............++|+|++++++++.. ++.|.+|+....            
T Consensus       140 l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~------------  207 (330)
T PRK11028        140 LWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDP------------  207 (330)
T ss_pred             EEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCC------------
Confidence            8554 566999999997633221100 0000011233567899999999877765 778844433210            


Q ss_pred             cccEEEeCCC--CceEEecc------CCCCEEEEEEcCC-CeEEEEE-CCCcEEEEeCCCCc-E---EEEEecCCceEEE
Q 006825          548 VPETVFALSD--KPICSFQG------HLDDVLDLSWSKS-QHLLSSS-MDKTVRLWHLSSKT-C---LKIFSHSDYDISL  613 (630)
Q Consensus       548 ~~~~Vwdlsg--k~l~tL~G------Hs~~V~sLafSPd-~~LaSgS-~DgtVrIWDl~tg~-~---l~t~~H~~~V~sV  613 (630)
                              ++  +.+.++..      +......+.|+|+ ++|+++. .+++|.+|++.... .   +..+.-....+.+
T Consensus       208 --------~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~  279 (330)
T PRK11028        208 --------HGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGF  279 (330)
T ss_pred             --------CCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCce
Confidence                    11  11222221      1123456899999 7777764 48999999986532 2   2222211234456


Q ss_pred             E-cCCCcEEEEec
Q 006825          614 V-DRLMLRFAYGA  625 (630)
Q Consensus       614 a-s~~~~~lAsgs  625 (630)
                      + ++++..+.++.
T Consensus       280 ~~~~dg~~l~va~  292 (330)
T PRK11028        280 NIDHSGKYLIAAG  292 (330)
T ss_pred             EECCCCCEEEEEE
Confidence            6 77777766553

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.22  E-value=6.7e-10  Score=125.20  Aligned_cols=230  Identities=16%  Similarity=0.108  Sum_probs=164.1

Q ss_pred             ccceeEEEeec----ceEeecCCCccEecccCCCCce-----eEEecCCccCCEEEEEEcCCCC--eEEeecCCC-----
Q 006825          339 SPIVQELMRRQ----NVEEGNKDSFDLNNNGSSGGGM-----KSKKKGSWFKSIRTVASSVTGH--KERRSSDER-----  402 (630)
Q Consensus       339 s~~V~~Lafs~----~laSgS~D~tvr~vWD~~tG~~-----~~~lk~gH~~~V~sVAfSpdG~--~lasgS~D~-----  402 (630)
                      ...|.++.|.|    .+|.|+.+|.|- +||+..+..     +......|...|.++.|..+-.  .+.+++.|+     
T Consensus       242 ~s~v~~~~f~p~~p~ll~gG~y~GqV~-lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W  320 (555)
T KOG1587|consen  242 PSEVTCLKFCPFDPNLLAGGCYNGQVV-LWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSW  320 (555)
T ss_pred             CCceeEEEeccCCcceEEeeccCceEE-EEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeee
Confidence            35688899988    799999999999 999987665     2233457999999999987433  377777676     


Q ss_pred             CC------------cccc------CCcceEEEeecCCCe---EEEecCCcEEEEEeCCCCccc--cee-eeeEecccCcC
Q 006825          403 DT------------SSEK------GGRRSSSATDDSQDV---SFHGQERVRVRQYGKSCKDLT--ALY-KCQEIQAHNGS  458 (630)
Q Consensus       403 dt------------~s~~------gh~~~Vsa~~~s~d~---l~Sgs~Dg~VriWd~~~~el~--~~~-~v~tL~gHt~~  458 (630)
                      ++            ....      .....++++.|.+..   ++.|.++|.|..=.....+..  ..+ .+..+..|.++
T Consensus       321 ~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~  400 (555)
T KOG1587|consen  321 DTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGP  400 (555)
T ss_pred             eccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcc
Confidence            10            0011      233456666666544   899999999987322221111  111 23467789999


Q ss_pred             EEEEEEccCCCEEEEEeCCCcEEEEECc-CCceeeeeecccccCcccceEEEEECCC-CCEEEEeeCCCeeeeecccccc
Q 006825          459 IWSIKFSLDGRYLASAGEDCVIHVWQVV-ESERKGELLEKQEDGHLNMLLLANGSPE-PTSLSPKHLDNHLEKKRRGRSI  536 (630)
Q Consensus       459 V~sVaFSpDG~~LASgS~DgtIrVWDl~-tg~~~~~l~~~~~~gh~~~V~svafSpd-g~~lasgs~Dg~I~i~~~~~~~  536 (630)
                      |++|.++|=+..++..+.|-+||||... ....+..     +..+...|+.++|||- ...++++..+|.+         
T Consensus       401 v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~-----~~~~~~~v~~vaWSptrpavF~~~d~~G~l---------  466 (555)
T KOG1587|consen  401 VYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLS-----LDSSPDYVTDVAWSPTRPAVFATVDGDGNL---------  466 (555)
T ss_pred             eEeeecCCCccceeeeeccceeEeccccCCCCcchh-----hhhccceeeeeEEcCcCceEEEEEcCCCce---------
Confidence            9999999976655554459999999876 4344433     3667777999999998 5677778889999         


Q ss_pred             cccccccCccccccEEEeC---CCCceEEeccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCC
Q 006825          537 NRKSLSLDHMVVPETVFAL---SDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSS  597 (630)
Q Consensus       537 ~~~s~s~d~~i~~~~Vwdl---sgk~l~tL~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~t  597 (630)
                                    .+||+   ...++.+..-+....+.+.|++. ..|+.|..-|+|++|++..
T Consensus       467 --------------~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~  517 (555)
T KOG1587|consen  467 --------------DIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSE  517 (555)
T ss_pred             --------------ehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence                          66666   34566666556666778888887 8999999999999999964

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.21  E-value=2e-10  Score=118.25  Aligned_cols=197  Identities=13%  Similarity=0.079  Sum_probs=143.2

Q ss_pred             ccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcC
Q 006825          379 WFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGS  458 (630)
Q Consensus       379 H~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~  458 (630)
                      -..+|++-||.+|+..+                             +.+.....|.||.....++  ....++|+.|...
T Consensus         9 ~~~pitchAwn~drt~i-----------------------------Av~~~~~evhiy~~~~~~~--w~~~htls~Hd~~   57 (361)
T KOG1523|consen    9 LLEPITCHAWNSDRTQI-----------------------------AVSPNNHEVHIYSMLGADL--WEPAHTLSEHDKI   57 (361)
T ss_pred             ccCceeeeeecCCCceE-----------------------------EeccCCceEEEEEecCCCC--ceeceehhhhCcc
Confidence            34577777777776544                             4445556688888766543  3467899999999


Q ss_pred             EEEEEEccCCCEEEEEeCCCcEEEEEC-cCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeeccccccc
Q 006825          459 IWSIKFSLDGRYLASAGEDCVIHVWQV-VESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSIN  537 (630)
Q Consensus       459 V~sVaFSpDG~~LASgS~DgtIrVWDl-~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~  537 (630)
                      |+.|+|+|..+.|+|++.|+...||.. ..++-..++.   +..+...+.+|.|+|....+++++....|.++-..... 
T Consensus        58 vtgvdWap~snrIvtcs~drnayVw~~~~~~~Wkptlv---LlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~EN-  133 (361)
T KOG1523|consen   58 VTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGTWKPTLV---LLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQEN-  133 (361)
T ss_pred             eeEEeecCCCCceeEccCCCCccccccCCCCeecccee---EEEeccceeeEeecCcCceEEeccCccEEEEEEEeccc-
Confidence            999999999999999999999999999 4444333332   35677889999999999999999999888443322110 


Q ss_pred             ccccccCccccccEEEeCCCCceEEeccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeC------------------CCC
Q 006825          538 RKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHL------------------SSK  598 (630)
Q Consensus       538 ~~s~s~d~~i~~~~Vwdlsgk~l~tL~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl------------------~tg  598 (630)
                                   ..|-.  +.  .-+-+...|++|.|+|+ -+|+.||.|+.+|++..                  .-|
T Consensus       134 -------------dWWVs--Kh--ikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG  196 (361)
T KOG1523|consen  134 -------------DWWVS--KH--IKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFG  196 (361)
T ss_pred             -------------ceehh--hh--hCCccccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHH
Confidence                         11111  11  11336678999999999 88899999999999853                  124


Q ss_pred             cEEEEEe-cCCceEEEE-cCCCcEEEEecce
Q 006825          599 TCLKIFS-HSDYDISLV-DRLMLRFAYGAFL  627 (630)
Q Consensus       599 ~~l~t~~-H~~~V~sVa-s~~~~~lAsgs~~  627 (630)
                      +++..+. ..++|..+. .+.+..|++-+.+
T Consensus       197 ~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hd  227 (361)
T KOG1523|consen  197 QLMSEASSSGGWVHGVLFSPSGNRLAWVGHD  227 (361)
T ss_pred             HHHHhhccCCCceeeeEeCCCCCEeeEecCC
Confidence            5555664 788899999 8888888876543

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.21  E-value=2e-09  Score=112.60  Aligned_cols=136  Identities=19%  Similarity=0.260  Sum_probs=111.9

Q ss_pred             EEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEe--CCCcEEEEECcCCceeeeeecccccCcccceEEEE
Q 006825          433 VRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAG--EDCVIHVWQVVESERKGELLEKQEDGHLNMLLLAN  510 (630)
Q Consensus       433 VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS--~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~sva  510 (630)
                      |.|||+++.++  +..+.+...|...+.++.+++.+.+||--+  .-|.|.|||+.+-+.+..+     ..|.+.+.+++
T Consensus       108 IyIydI~~Mkl--LhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I-----~aH~~~lAala  180 (391)
T KOG2110|consen  108 IYIYDIKDMKL--LHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTI-----NAHKGPLAALA  180 (391)
T ss_pred             EEEEeccccee--ehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEE-----EecCCceeEEE
Confidence            99999987754  222333345667788888888888888743  3478999999998888875     79999999999


Q ss_pred             ECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeC-CCCceEEeccCC--CCEEEEEEcCC-CeEEEEEC
Q 006825          511 GSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHL--DDVLDLSWSKS-QHLLSSSM  586 (630)
Q Consensus       511 fSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL~GHs--~~V~sLafSPd-~~LaSgS~  586 (630)
                      |+++|.+||+++..|+|-                      +||.+ +|+.+.+|.--.  -.|.+|+|+|+ ++|+..|.
T Consensus       181 fs~~G~llATASeKGTVI----------------------RVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~  238 (391)
T KOG2110|consen  181 FSPDGTLLATASEKGTVI----------------------RVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSN  238 (391)
T ss_pred             ECCCCCEEEEeccCceEE----------------------EEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecC
Confidence            999999999999999873                      88888 889998886433  35799999999 99999999


Q ss_pred             CCcEEEEeCCC
Q 006825          587 DKTVRLWHLSS  597 (630)
Q Consensus       587 DgtVrIWDl~t  597 (630)
                      -+||+||.++.
T Consensus       239 TeTVHiFKL~~  249 (391)
T KOG2110|consen  239 TETVHIFKLEK  249 (391)
T ss_pred             CCeEEEEEecc
Confidence            99999998864

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.21  E-value=1.1e-09  Score=109.22  Aligned_cols=202  Identities=15%  Similarity=0.105  Sum_probs=143.8

Q ss_pred             CEEEEEEcCCCCeEEeecCCCC----------------C-----ccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCC
Q 006825          382 SIRTVASSVTGHKERRSSDERD----------------T-----SSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSC  440 (630)
Q Consensus       382 ~V~sVAfSpdG~~lasgS~D~d----------------t-----~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~  440 (630)
                      .|.+-|++|-+++++.|+.+++                .     ..+.+|...+..+.|..+.+++++. |.|+-|.+..
T Consensus        12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d~~Lls~gd-G~V~gw~W~E   90 (325)
T KOG0649|consen   12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHDDFLLSGGD-GLVYGWEWNE   90 (325)
T ss_pred             HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeehhheeeccC-ceEEEeeehh
Confidence            3445677777777777766651                0     1168899999999999777887765 9999887653


Q ss_pred             Cccc-ceeeee--EecccC-----cCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEEC
Q 006825          441 KDLT-ALYKCQ--EIQAHN-----GSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGS  512 (630)
Q Consensus       441 ~el~-~~~~v~--tL~gHt-----~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafS  512 (630)
                      .+-. ....+.  ...-|.     -.|++|-..|..+-|+.++.|+.+.-||+++|+..++     +.||...|.++..-
T Consensus        91 ~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~-----~rGHtDYvH~vv~R  165 (325)
T KOG0649|consen   91 EEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQRE-----YRGHTDYVHSVVGR  165 (325)
T ss_pred             hhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEE-----EcCCcceeeeeeec
Confidence            3210 000010  112233     3589999999888888888999999999999998888     49999999999986


Q ss_pred             CCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeC-CCCceEEecc---------CC-CCEEEEEEcCCCeE
Q 006825          513 PEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQG---------HL-DDVLDLSWSKSQHL  581 (630)
Q Consensus       513 pdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL~G---------Hs-~~V~sLafSPd~~L  581 (630)
                      .....+++|+.||++                       ++|+. +++++..++.         |- ..|.+|+-+. .+|
T Consensus       166 ~~~~qilsG~EDGtv-----------------------RvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~e-dWl  221 (325)
T KOG0649|consen  166 NANGQILSGAEDGTV-----------------------RVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNE-DWL  221 (325)
T ss_pred             ccCcceeecCCCccE-----------------------EEEeccccceeEEeccccChhhcCcccCceeEEEeccC-ceE
Confidence            566678899999999                       66666 5666655432         22 3467777654 566


Q ss_pred             EEEECCCcEEEEeCCCCcEEEEEecCCceEEEE
Q 006825          582 LSSSMDKTVRLWHLSSKTCLKIFSHSDYDISLV  614 (630)
Q Consensus       582 aSgS~DgtVrIWDl~tg~~l~t~~H~~~V~sVa  614 (630)
                      +.|+ -..+-||++++.++..+|+-...|..+.
T Consensus       222 vCGg-Gp~lslwhLrsse~t~vfpipa~v~~v~  253 (325)
T KOG0649|consen  222 VCGG-GPKLSLWHLRSSESTCVFPIPARVHLVD  253 (325)
T ss_pred             EecC-CCceeEEeccCCCceEEEecccceeEee
Confidence            6655 4678999999999999997555555444

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.20  E-value=2.4e-10  Score=131.65  Aligned_cols=140  Identities=22%  Similarity=0.324  Sum_probs=121.3

Q ss_pred             EEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccCcc
Q 006825          424 SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHL  503 (630)
Q Consensus       424 l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~  503 (630)
                      +++|+--+.|.+|+....+.     ...+.||.+.|..+.|+-||++++|.|+|+++|+|++.+.+.....    .-+|.
T Consensus       148 i~~gsv~~~iivW~~~~dn~-----p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~----~fgHs  218 (967)
T KOG0974|consen  148 IASGSVFGEIIVWKPHEDNK-----PIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCT----GFGHS  218 (967)
T ss_pred             EEeccccccEEEEeccccCC-----cceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcc----ccccc
Confidence            67777888899999874332     1258999999999999999999999999999999999998866522    47999


Q ss_pred             cceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeCCCCceEEeccCCC-CEEEEEEcCC-CeE
Q 006825          504 NMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLD-DVLDLSWSKS-QHL  581 (630)
Q Consensus       504 ~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL~GHs~-~V~sLafSPd-~~L  581 (630)
                      ..++.+.|.|.  .+++++.|-+.                       ++|...++.+.++.+|.. .|..++..++ ..+
T Consensus       219 aRvw~~~~~~n--~i~t~gedctc-----------------------rvW~~~~~~l~~y~~h~g~~iw~~~~~~~~~~~  273 (967)
T KOG0974|consen  219 ARVWACCFLPN--RIITVGEDCTC-----------------------RVWGVNGTQLEVYDEHSGKGIWKIAVPIGVIIK  273 (967)
T ss_pred             ceeEEEEeccc--eeEEeccceEE-----------------------EEEecccceehhhhhhhhcceeEEEEcCCceEE
Confidence            99999999998  89999999998                       888888888889999975 5999999998 889


Q ss_pred             EEEECCCcEEEEeCCC
Q 006825          582 LSSSMDKTVRLWHLSS  597 (630)
Q Consensus       582 aSgS~DgtVrIWDl~t  597 (630)
                      +|++.|+++++||+..
T Consensus       274 vT~g~Ds~lk~~~l~~  289 (967)
T KOG0974|consen  274 VTGGNDSTLKLWDLNG  289 (967)
T ss_pred             EeeccCcchhhhhhhc
Confidence            9999999999999854

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.19  E-value=7.7e-10  Score=121.55  Aligned_cols=233  Identities=15%  Similarity=0.134  Sum_probs=148.3

Q ss_pred             eeecCCCceeEEEEcCCCceEeeecceeeecCccceeEEEeec----ceEeecCCCccEecccCCCCceeEEecCCccCC
Q 006825          307 NEIQEDGTWKKVKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQ----NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKS  382 (630)
Q Consensus       307 ~e~~~dg~~~~l~dv~TG~~lt~eef~~l~GHs~~V~~Lafs~----~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~  382 (630)
                      +..++.|....|==.+-|+.-  ..+..|.+|+..|+.|-|+|    .||++|.|.+|+ ||.+..|         |...
T Consensus        49 n~e~~G~~lgvlPl~~~Gr~~--r~i~~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VK-iW~lp~g---------~~q~  116 (1012)
T KOG1445|consen   49 NIEGEGGKLGVLPLTAKGRRT--RDIGILAAHGDQVTDLGFSPFADELLATCSRDEPVK-IWKLPRG---------HSQK  116 (1012)
T ss_pred             eecCCCceEEEEeccccCccc--cccceeecccceeeccCccccchhhhhcccCCCeeE-EEecCCC---------cccc
Confidence            333443344444333334433  23467889999999999999    799999999999 9987533         3322


Q ss_pred             EE--EEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCC--CeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcC
Q 006825          383 IR--TVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQ--DVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGS  458 (630)
Q Consensus       383 V~--sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~--d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~  458 (630)
                      +.  .+.|.                   +....|-++.|.+  |++.....-+.+++||+.+.+     .+.++.+|.+.
T Consensus       117 LSape~~~g-------------------~~~~~vE~l~fHpTaDgil~s~a~g~v~i~D~stqk-----~~~el~~h~d~  172 (1012)
T KOG1445|consen  117 LSAPEIDVG-------------------GGNVIVECLRFHPTADGILASGAHGSVYITDISTQK-----TAVELSGHTDK  172 (1012)
T ss_pred             cCCcceeec-------------------CCceEEEEeecccCcCceEEeccCceEEEEEcccCc-----eeecccCCchh
Confidence            20  01111                   1223344444443  455555667899999998765     46678999999


Q ss_pred             EEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccc-eEEEEECCCCCEEEE-eeCCCeeeeecccccc
Q 006825          459 IWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNM-LLLANGSPEPTSLSP-KHLDNHLEKKRRGRSI  536 (630)
Q Consensus       459 V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~-V~svafSpdg~~las-gs~Dg~I~i~~~~~~~  536 (630)
                      |.++.|+.||.+|+++..|+.|+|||-+......++    ..+|.+. =..+.|...-..|++ |.....++        
T Consensus       173 vQSa~WseDG~llatscKdkqirifDPRa~~~piQ~----te~H~~~rdsRv~w~Gn~~rlisTGF~~~R~r--------  240 (1012)
T KOG1445|consen  173 VQSADWSEDGKLLATSCKDKQIRIFDPRASMEPIQT----TEGHGGMRDSRVLWAGNWERLISTGFTTKRIR--------  240 (1012)
T ss_pred             hhccccccCCceEeeecCCcceEEeCCccCCCcccc----ccccccchhheeeeccchhhhhhcccchhhhe--------
Confidence            999999999999999999999999998765433332    3666543 124555544333333 33222221        


Q ss_pred             cccccccCccccccEEEeC--CCCceEEecc-CCCCEEEEEEcCC-Ce-EEEEECCCcEEEEeCCCCc
Q 006825          537 NRKSLSLDHMVVPETVFAL--SDKPICSFQG-HLDDVLDLSWSKS-QH-LLSSSMDKTVRLWHLSSKT  599 (630)
Q Consensus       537 ~~~s~s~d~~i~~~~Vwdl--sgk~l~tL~G-Hs~~V~sLafSPd-~~-LaSgS~DgtVrIWDl~tg~  599 (630)
                               .+   ++|+.  -+.++++++- .+-.|.---|.|| ++ +++|-.+.++..+.+...+
T Consensus       241 ---------eV---~~~Dtr~f~~p~~tleld~stGvLiPl~DpDt~llfLaGKG~~~l~~lE~~d~q  296 (1012)
T KOG1445|consen  241 ---------EV---RAYDTRKFGAPVHTLELDSSTGVLIPLYDPDTRLLFLAGKGTNKLFMLEMQDRQ  296 (1012)
T ss_pred             ---------ee---eeeeccccCCcceeEEeecccceEeeeecCCCceEEEecCCcceEEEEEecCCC
Confidence                     01   56766  3556666542 2234555668888 54 4577778899988887654

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.17  E-value=7.9e-09  Score=114.34  Aligned_cols=203  Identities=9%  Similarity=-0.050  Sum_probs=135.1

Q ss_pred             eeeecCccceeEEEeec---ceEeecC---CCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCcc
Q 006825          333 EMCVGHSPIVQELMRRQ---NVEEGNK---DSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSS  406 (630)
Q Consensus       333 ~~l~GHs~~V~~Lafs~---~laSgS~---D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s  406 (630)
                      ..+..|...|....|+|   .|+-.+.   +..+. +||+.+|+.. .+. .+.+.+.+.+|+|||+.++....      
T Consensus       195 ~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~-~~dl~~g~~~-~l~-~~~g~~~~~~~SPDG~~la~~~~------  265 (435)
T PRK05137        195 RYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVY-LLDLETGQRE-LVG-NFPGMTFAPRFSPDGRKVVMSLS------  265 (435)
T ss_pred             EEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEE-EEECCCCcEE-Eee-cCCCcccCcEECCCCCEEEEEEe------
Confidence            45667888899999999   4655543   46788 9999988764 344 56667788999999997752211      


Q ss_pred             ccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeC-CC--cEEEE
Q 006825          407 EKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGE-DC--VIHVW  483 (630)
Q Consensus       407 ~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~-Dg--tIrVW  483 (630)
                                          ......|++|+..+++      ...|..|........|+|||++|+..+. ++  .|.+|
T Consensus       266 --------------------~~g~~~Iy~~d~~~~~------~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~  319 (435)
T PRK05137        266 --------------------QGGNTDIYTMDLRSGT------TTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVM  319 (435)
T ss_pred             --------------------cCCCceEEEEECCCCc------eEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEE
Confidence                                0113458888887764      3446667777888999999998887764 33  58888


Q ss_pred             ECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCC---eeeeecccccccccccccCccccccEEEeCCCCce
Q 006825          484 QVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDN---HLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPI  560 (630)
Q Consensus       484 Dl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg---~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l  560 (630)
                      |+..+... .+.     .+...+....|+|+|+.|+....+.   .|                       .+|++.+...
T Consensus       320 d~~g~~~~-~lt-----~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i-----------------------~~~d~~~~~~  370 (435)
T PRK05137        320 NADGSNPR-RIS-----FGGGRYSTPVWSPRGDLIAFTKQGGGQFSI-----------------------GVMKPDGSGE  370 (435)
T ss_pred             ECCCCCeE-Eee-----cCCCcccCeEECCCCCEEEEEEcCCCceEE-----------------------EEEECCCCce
Confidence            88765443 321     1233455678999999998865432   22                       5666655444


Q ss_pred             EEeccCCCCEEEEEEcCC-CeEEEEECC------CcEEEEeCCCCcE
Q 006825          561 CSFQGHLDDVLDLSWSKS-QHLLSSSMD------KTVRLWHLSSKTC  600 (630)
Q Consensus       561 ~tL~GHs~~V~sLafSPd-~~LaSgS~D------gtVrIWDl~tg~~  600 (630)
                      ..+. +...+..+.|+|| ++|+..+.+      ..+.++|+..+..
T Consensus       371 ~~lt-~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~  416 (435)
T PRK05137        371 RILT-SGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNE  416 (435)
T ss_pred             Eecc-CCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCce
Confidence            4443 2235678899999 777655443      2577778765543

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.17  E-value=6.1e-09  Score=115.20  Aligned_cols=205  Identities=12%  Similarity=-0.011  Sum_probs=129.5

Q ss_pred             ccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCcEEEEEeC
Q 006825          359 FDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGK  438 (630)
Q Consensus       359 tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~  438 (630)
                      .+. +||...+. .+.+. .+...+.+.+|||||++|+..+.+                          ..+..|++|++
T Consensus       180 ~l~-~~d~dg~~-~~~lt-~~~~~~~~p~wSPDG~~la~~s~~--------------------------~g~~~i~i~dl  230 (429)
T PRK03629        180 ELR-VSDYDGYN-QFVVH-RSPQPLMSPAWSPDGSKLAYVTFE--------------------------SGRSALVIQTL  230 (429)
T ss_pred             eEE-EEcCCCCC-CEEee-cCCCceeeeEEcCCCCEEEEEEec--------------------------CCCcEEEEEEC
Confidence            455 67775444 34444 466789999999999988743211                          22456889998


Q ss_pred             CCCcccceeeeeEecccCcCEEEEEEccCCCEEEEE-eCCC--cEEEEECcCCceeeeeecccccCcccceEEEEECCCC
Q 006825          439 SCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASA-GEDC--VIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEP  515 (630)
Q Consensus       439 ~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASg-S~Dg--tIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg  515 (630)
                      .+++..   .+..+.+|   +..++|+|||++|+.. +.++  .|.+||+.+++....      ..+...+....|+|||
T Consensus       231 ~~G~~~---~l~~~~~~---~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~l------t~~~~~~~~~~wSPDG  298 (429)
T PRK03629        231 ANGAVR---QVASFPRH---NGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQV------TDGRSNNTEPTWFPDS  298 (429)
T ss_pred             CCCCeE---EccCCCCC---cCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEc------cCCCCCcCceEECCCC
Confidence            776432   22233444   4568999999988754 4455  488899988764432      2233456788999999


Q ss_pred             CEEEEeeCC-CeeeeecccccccccccccCccccccEEEeCCCCceEEeccCCCCEEEEEEcCC-CeEEEEECC---CcE
Q 006825          516 TSLSPKHLD-NHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMD---KTV  590 (630)
Q Consensus       516 ~~lasgs~D-g~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL~GHs~~V~sLafSPd-~~LaSgS~D---gtV  590 (630)
                      +.|+..+.. +...+                     .++++.+.....+..+...+....|+|+ ++|+..+.+   ..|
T Consensus       299 ~~I~f~s~~~g~~~I---------------------y~~d~~~g~~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I  357 (429)
T PRK03629        299 QNLAYTSDQAGRPQV---------------------YKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHI  357 (429)
T ss_pred             CEEEEEeCCCCCceE---------------------EEEECCCCCeEEeecCCCCccCEEECCCCCEEEEEEccCCCceE
Confidence            988877654 22211                     2334444444555445555678899999 788766543   358


Q ss_pred             EEEeCCCCcEEEEEecCCceEEEE-cCCCcEEEEecc
Q 006825          591 RLWHLSSKTCLKIFSHSDYDISLV-DRLMLRFAYGAF  626 (630)
Q Consensus       591 rIWDl~tg~~l~t~~H~~~V~sVa-s~~~~~lAsgs~  626 (630)
                      .+||+.+++.. .+.......... +|++..+++.+.
T Consensus       358 ~~~dl~~g~~~-~Lt~~~~~~~p~~SpDG~~i~~~s~  393 (429)
T PRK03629        358 AKQDLATGGVQ-VLTDTFLDETPSIAPNGTMVIYSSS  393 (429)
T ss_pred             EEEECCCCCeE-EeCCCCCCCCceECCCCCEEEEEEc
Confidence            89999888744 333111122333 788887777654

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.17  E-value=5.2e-11  Score=129.05  Aligned_cols=123  Identities=21%  Similarity=0.347  Sum_probs=106.9

Q ss_pred             eeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCC--CCEEEEeeCCC
Q 006825          448 KCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPE--PTSLSPKHLDN  525 (630)
Q Consensus       448 ~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpd--g~~lasgs~Dg  525 (630)
                      .-++|.||++.|+|+.|+.+|.+|+|||.|-.+.|||....+.+..+    ..||...|+++.|-|.  .+++++|+.|.
T Consensus        42 lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI----~TgHtaNIFsvKFvP~tnnriv~sgAgDk  117 (758)
T KOG1310|consen   42 LEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSI----STGHTANIFSVKFVPYTNNRIVLSGAGDK  117 (758)
T ss_pred             hhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeee----ecccccceeEEeeeccCCCeEEEeccCcc
Confidence            45789999999999999999999999999999999999876666554    5899999999999986  67899999999


Q ss_pred             eeeeecccccccccccccCccccccEEEeCC-----------CCceEEeccCCCCEEEEEEcCC--CeEEEEECCCcEEE
Q 006825          526 HLEKKRRGRSINRKSLSLDHMVVPETVFALS-----------DKPICSFQGHLDDVLDLSWSKS--QHLLSSSMDKTVRL  592 (630)
Q Consensus       526 ~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdls-----------gk~l~tL~GHs~~V~sLafSPd--~~LaSgS~DgtVrI  592 (630)
                      .|                       ++|+++           ...++.+..|...|..|+-.|+  ..+.+++.||+||-
T Consensus       118 ~i-----------------------~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQ  174 (758)
T KOG1310|consen  118 LI-----------------------KLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQ  174 (758)
T ss_pred             eE-----------------------EEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceee
Confidence            99                       555553           1345567789999999999998  89999999999999


Q ss_pred             EeCCC
Q 006825          593 WHLSS  597 (630)
Q Consensus       593 WDl~t  597 (630)
                      +|++.
T Consensus       175 yDiRE  179 (758)
T KOG1310|consen  175 YDIRE  179 (758)
T ss_pred             ecccC
Confidence            99986

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.16  E-value=7.6e-09  Score=114.44  Aligned_cols=214  Identities=10%  Similarity=-0.003  Sum_probs=135.1

Q ss_pred             eeeecCccceeEEEeec---ceEeecC---CCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCcc
Q 006825          333 EMCVGHSPIVQELMRRQ---NVEEGNK---DSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSS  406 (630)
Q Consensus       333 ~~l~GHs~~V~~Lafs~---~laSgS~---D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s  406 (630)
                      ..+..|...|...+|+|   .|+..+.   +..+. +||+.+|+.... . .+.....+++|+|||++++-..       
T Consensus       197 ~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~-~~dl~~g~~~~l-~-~~~g~~~~~~~SpDG~~l~~~~-------  266 (433)
T PRK04922        197 QTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIY-VQDLATGQRELV-A-SFRGINGAPSFSPDGRRLALTL-------  266 (433)
T ss_pred             eEeecCCCccccccCCCCCCEEEEEecCCCCcEEE-EEECCCCCEEEe-c-cCCCCccCceECCCCCEEEEEE-------
Confidence            34556667788888988   5666553   34577 899988875432 2 3444455789999999775211       


Q ss_pred             ccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeC-CCc--EEEE
Q 006825          407 EKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGE-DCV--IHVW  483 (630)
Q Consensus       407 ~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~-Dgt--IrVW  483 (630)
                                         +......|++|+..+++      ++.+..|.......+|+|||++|+..+. ++.  |.++
T Consensus       267 -------------------s~~g~~~Iy~~d~~~g~------~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~  321 (433)
T PRK04922        267 -------------------SRDGNPEIYVMDLGSRQ------LTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRV  321 (433)
T ss_pred             -------------------eCCCCceEEEEECCCCC------eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEE
Confidence                               11123468999988764      3445667666778999999998887764 445  6666


Q ss_pred             ECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCC---eeeeecccccccccccccCccccccEEEeCCCCce
Q 006825          484 QVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDN---HLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPI  560 (630)
Q Consensus       484 Dl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg---~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l  560 (630)
                      ++.+++.....    ..+  .....++|+|+|++|+....++   .|                       .+|++.+...
T Consensus       322 dl~~g~~~~lt----~~g--~~~~~~~~SpDG~~Ia~~~~~~~~~~I-----------------------~v~d~~~g~~  372 (433)
T PRK04922        322 AASGGSAERLT----FQG--NYNARASVSPDGKKIAMVHGSGGQYRI-----------------------AVMDLSTGSV  372 (433)
T ss_pred             ECCCCCeEEee----cCC--CCccCEEECCCCCEEEEEECCCCceeE-----------------------EEEECCCCCe
Confidence            77666533221    122  2334689999999988765432   23                       6777744334


Q ss_pred             EEeccCCCCEEEEEEcCC-CeEEEEECC---CcEEEEeCCCCcEEEEEe-cCCceEE
Q 006825          561 CSFQGHLDDVLDLSWSKS-QHLLSSSMD---KTVRLWHLSSKTCLKIFS-HSDYDIS  612 (630)
Q Consensus       561 ~tL~GHs~~V~sLafSPd-~~LaSgS~D---gtVrIWDl~tg~~l~t~~-H~~~V~s  612 (630)
                      ..+. +........|+|| ++|+..+.+   ..|.+|++. +...+.+. +.+.+..
T Consensus       373 ~~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~-g~~~~~l~~~~g~~~~  427 (433)
T PRK04922        373 RTLT-PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTD-GRVRQRLVSADGEVRE  427 (433)
T ss_pred             EECC-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECC-CCceEEcccCCCCCCC
Confidence            4443 3334567799999 777766653   457777874 44445454 4444443

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.15  E-value=5.6e-09  Score=115.37  Aligned_cols=202  Identities=16%  Similarity=0.003  Sum_probs=128.1

Q ss_pred             ccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCcEEEEEeC
Q 006825          359 FDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGK  438 (630)
Q Consensus       359 tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~  438 (630)
                      .+. +||. .|...+.+. .+...|.+.+|||||++++..+.+                          .....|++||+
T Consensus       177 ~L~-~~D~-dG~~~~~l~-~~~~~v~~p~wSPDG~~la~~s~~--------------------------~~~~~I~~~dl  227 (427)
T PRK02889        177 QLQ-ISDA-DGQNAQSAL-SSPEPIISPAWSPDGTKLAYVSFE--------------------------SKKPVVYVHDL  227 (427)
T ss_pred             EEE-EECC-CCCCceEec-cCCCCcccceEcCCCCEEEEEEcc--------------------------CCCcEEEEEEC
Confidence            444 5565 455556666 678889999999999988754322                          12346999999


Q ss_pred             CCCcccceeeeeEecccCcCEEEEEEccCCCEEE-EEeCCCcEEEEECc--CCceeeeeecccccCcccceEEEEECCCC
Q 006825          439 SCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLA-SAGEDCVIHVWQVV--ESERKGELLEKQEDGHLNMLLLANGSPEP  515 (630)
Q Consensus       439 ~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LA-SgS~DgtIrVWDl~--tg~~~~~l~~~~~~gh~~~V~svafSpdg  515 (630)
                      .+++.      ..+....+.+...+|+|||+.|+ +.+.++..+||.+.  .+. ...+     ..+........|+|||
T Consensus       228 ~~g~~------~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~~l-----t~~~~~~~~~~wSpDG  295 (427)
T PRK02889        228 ATGRR------RVVANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSG-LRRL-----TQSSGIDTEPFFSPDG  295 (427)
T ss_pred             CCCCE------EEeecCCCCccceEECCCCCEEEEEEccCCCceEEEEECCCCC-cEEC-----CCCCCCCcCeEEcCCC
Confidence            87753      22333445667899999999876 56788887777653  333 3332     3344445667899999


Q ss_pred             CEEEEeeC-CCeeeeecccccccccccccCccccccEEEe--CCCCceEEeccCCCCEEEEEEcCC-CeEEEEECCC---
Q 006825          516 TSLSPKHL-DNHLEKKRRGRSINRKSLSLDHMVVPETVFA--LSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDK---  588 (630)
Q Consensus       516 ~~lasgs~-Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwd--lsgk~l~tL~GHs~~V~sLafSPd-~~LaSgS~Dg---  588 (630)
                      +.|+..+. ++..                       .+|.  +.+.....+.-+.......+|+|+ ++|+..+.++   
T Consensus       296 ~~l~f~s~~~g~~-----------------------~Iy~~~~~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~  352 (427)
T PRK02889        296 RSIYFTSDRGGAP-----------------------QIYRMPASGGAAQRVTFTGSYNTSPRISPDGKLLAYISRVGGAF  352 (427)
T ss_pred             CEEEEEecCCCCc-----------------------EEEEEECCCCceEEEecCCCCcCceEECCCCCEEEEEEccCCcE
Confidence            98887654 2333                       3333  233222222222233456789999 8888777654   


Q ss_pred             cEEEEeCCCCcEEEEEecCCceEEEE-cCCCcEEEEec
Q 006825          589 TVRLWHLSSKTCLKIFSHSDYDISLV-DRLMLRFAYGA  625 (630)
Q Consensus       589 tVrIWDl~tg~~l~t~~H~~~V~sVa-s~~~~~lAsgs  625 (630)
                      .|.+||+.+++... +.+........ +|++..+++..
T Consensus       353 ~I~v~d~~~g~~~~-lt~~~~~~~p~~spdg~~l~~~~  389 (427)
T PRK02889        353 KLYVQDLATGQVTA-LTDTTRDESPSFAPNGRYILYAT  389 (427)
T ss_pred             EEEEEECCCCCeEE-ccCCCCccCceECCCCCEEEEEE
Confidence            69999999887543 33222334455 77777766654

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.14  E-value=1.7e-09  Score=110.25  Aligned_cols=191  Identities=13%  Similarity=0.120  Sum_probs=137.4

Q ss_pred             cceeEEEeec----ceEeecCCCccEecccCCCCce---eEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccccCCcc
Q 006825          340 PIVQELMRRQ----NVEEGNKDSFDLNNNGSSGGGM---KSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRR  412 (630)
Q Consensus       340 ~~V~~Lafs~----~laSgS~D~tvr~vWD~~tG~~---~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~  412 (630)
                      ..+++.-+..    ++.+.|-|.|+- |||+++|..   +..|. .|.+.|..|||..+|.                   
T Consensus       151 aPlTSFDWne~dp~~igtSSiDTTCT-iWdie~~~~~~vkTQLI-AHDKEV~DIaf~~~s~-------------------  209 (364)
T KOG0290|consen  151 APLTSFDWNEVDPNLIGTSSIDTTCT-IWDIETGVSGTVKTQLI-AHDKEVYDIAFLKGSR-------------------  209 (364)
T ss_pred             CcccccccccCCcceeEeecccCeEE-EEEEeeccccceeeEEE-ecCcceeEEEeccCcc-------------------
Confidence            3445544443    688999999999 999999743   55666 9999999999998543                   


Q ss_pred             eEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEcc-CCCEEEEEeCC-CcEEEEECcCCce
Q 006825          413 SSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSL-DGRYLASAGED-CVIHVWQVVESER  490 (630)
Q Consensus       413 ~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSp-DG~~LASgS~D-gtIrVWDl~tg~~  490 (630)
                               +.+++.+.||.||+||++..+-..  .+.+-..-..+...++|++ |-+++||-..| ..|.|-|++....
T Consensus       210 ---------~~FASvgaDGSvRmFDLR~leHST--IIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~t  278 (364)
T KOG0290|consen  210 ---------DVFASVGADGSVRMFDLRSLEHST--IIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCT  278 (364)
T ss_pred             ---------ceEEEecCCCcEEEEEecccccce--EEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCc
Confidence                     457889999999999997665321  2222222246788999998 77899997766 4589999976542


Q ss_pred             -eeeeecccccCcccceEEEEECCC-CCEEEEeeCCCeeeeecccccccccccccCccccccEEEeCCC-------CceE
Q 006825          491 -KGELLEKQEDGHLNMLLLANGSPE-PTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSD-------KPIC  561 (630)
Q Consensus       491 -~~~l~~~~~~gh~~~V~svafSpd-g~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsg-------k~l~  561 (630)
                       +..     +.+|...|..++|.|. ...|.++++|..+                       .+|++..       .++.
T Consensus       279 pva~-----L~~H~a~VNgIaWaPhS~~hictaGDD~qa-----------------------liWDl~q~~~~~~~dPil  330 (364)
T KOG0290|consen  279 PVAR-----LRNHQASVNGIAWAPHSSSHICTAGDDCQA-----------------------LIWDLQQMPRENGEDPIL  330 (364)
T ss_pred             ceeh-----hhcCcccccceEecCCCCceeeecCCcceE-----------------------EEEecccccccCCCCchh
Confidence             333     5899999999999997 6788899999988                       4555421       2333


Q ss_pred             EeccCCCCEEEEEEcCC--CeEEEEECCCcEEE
Q 006825          562 SFQGHLDDVLDLSWSKS--QHLLSSSMDKTVRL  592 (630)
Q Consensus       562 tL~GHs~~V~sLafSPd--~~LaSgS~DgtVrI  592 (630)
                      .+. -.++|+.|.|++.  ..|+-+. .+++.|
T Consensus       331 ay~-a~~EVNqi~Ws~~~~Dwiai~~-~kklei  361 (364)
T KOG0290|consen  331 AYT-AGGEVNQIQWSSSQPDWIAICF-GKKLEI  361 (364)
T ss_pred             hhh-ccceeeeeeecccCCCEEEEEe-cCeeeE
Confidence            333 4568999999986  5665554 344443

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.14  E-value=5.9e-10  Score=120.74  Aligned_cols=181  Identities=15%  Similarity=0.186  Sum_probs=134.5

Q ss_pred             eeecCccceeEEEeec---ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccccCC
Q 006825          334 MCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGG  410 (630)
Q Consensus       334 ~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh  410 (630)
                      ....|..+|.+-.++|   -|++.+.|+.|+ +|. .+|-...++- ....+|+|++|.|+...++              
T Consensus        99 sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iK-iWS-rsGMLRStl~-Q~~~~v~c~~W~p~S~~vl--------------  161 (737)
T KOG1524|consen   99 SISAHAAAISSGRWSPDGAGLLTAGEDGVIK-IWS-RSGMLRSTVV-QNEESIRCARWAPNSNSIV--------------  161 (737)
T ss_pred             hhhhhhhhhhhcccCCCCceeeeecCCceEE-EEe-ccchHHHHHh-hcCceeEEEEECCCCCceE--------------
Confidence            3467889999999998   799999999999 995 5777777776 7888999999999865433              


Q ss_pred             cceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCce
Q 006825          411 RRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESER  490 (630)
Q Consensus       411 ~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~  490 (630)
                                    +..+.-..|+-.....       .+-..++|.+.|.++.|++...+++|||+|...||||.. |..
T Consensus       162 --------------~c~g~h~~IKpL~~n~-------k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~-G~~  219 (737)
T KOG1524|consen  162 --------------FCQGGHISIKPLAANS-------KIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQ-GAN  219 (737)
T ss_pred             --------------EecCCeEEEeeccccc-------ceeEEeccCcEEEEeecCccccceeecCCceeEEeeccc-Ccc
Confidence                          3333333344332222       244578999999999999999999999999999999985 333


Q ss_pred             eeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeCCCCceEEe-ccCCCC
Q 006825          491 KGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSF-QGHLDD  569 (630)
Q Consensus       491 ~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL-~GHs~~  569 (630)
                      +..     ...|..+|++++|.|+ +.++.++... +                                  .| +...+.
T Consensus       220 Lf~-----S~~~ey~ITSva~npd-~~~~v~S~nt-~----------------------------------R~~~p~~GS  258 (737)
T KOG1524|consen  220 LFT-----SAAEEYAITSVAFNPE-KDYLLWSYNT-A----------------------------------RFSSPRVGS  258 (737)
T ss_pred             ccc-----CChhccceeeeeeccc-cceeeeeeee-e----------------------------------eecCCCccc
Confidence            333     3788999999999999 6665554221 1                                  12 234577


Q ss_pred             EEEEEEcCC-CeEEEEECCCcEEEEe
Q 006825          570 VLDLSWSKS-QHLLSSSMDKTVRLWH  594 (630)
Q Consensus       570 V~sLafSPd-~~LaSgS~DgtVrIWD  594 (630)
                      |..++||+| ..++.|...|.|.+=.
T Consensus       259 ifnlsWS~DGTQ~a~gt~~G~v~~A~  284 (737)
T KOG1524|consen  259 IFNLSWSADGTQATCGTSTGQLIVAY  284 (737)
T ss_pred             eEEEEEcCCCceeeccccCceEEEee
Confidence            899999999 7777777777765533

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.13  E-value=2.1e-09  Score=123.78  Aligned_cols=225  Identities=12%  Similarity=0.136  Sum_probs=149.2

Q ss_pred             EEeecceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeec----C
Q 006825          345 LMRRQNVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDD----S  420 (630)
Q Consensus       345 Lafs~~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~----s  420 (630)
                      .-|.|.++++...-+++ +||...++.+..+.. +.       | |+ +                   .|+.+.+    .
T Consensus      1073 hpf~p~i~~ad~r~~i~-vwd~e~~~~l~~F~n-~~-------~-~~-t-------------------~Vs~l~liNe~D 1122 (1387)
T KOG1517|consen 1073 HPFEPQIAAADDRERIR-VWDWEKGRLLNGFDN-GA-------F-PD-T-------------------RVSDLELINEQD 1122 (1387)
T ss_pred             cCCCceeEEcCCcceEE-EEecccCceeccccC-CC-------C-CC-C-------------------ccceeeeecccc
Confidence            33445788777677888 999999988777662 22       1 11 1                   1122211    1


Q ss_pred             CCeEEEecCCcEEEEEeCCCCcccceeeeeE---eccc----CcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeee
Q 006825          421 QDVSFHGQERVRVRQYGKSCKDLTALYKCQE---IQAH----NGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGE  493 (630)
Q Consensus       421 ~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~t---L~gH----t~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~  493 (630)
                      ...+.+++.||.||||+--........++..   |.++    .+.=.-++|.....+|+++|.=+.|||||+........
T Consensus      1123 ~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~d 1202 (1387)
T KOG1517|consen 1123 DALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVAD 1202 (1387)
T ss_pred             hhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEee
Confidence            1238899999999999642221111222222   2222    22224467777666677777789999999988777666


Q ss_pred             eecccccCcccceEEEEECC-CCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeC----CCCceEEeccCCC
Q 006825          494 LLEKQEDGHLNMLLLANGSP-EPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL----SDKPICSFQGHLD  568 (630)
Q Consensus       494 l~~~~~~gh~~~V~svafSp-dg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl----sgk~l~tL~GHs~  568 (630)
                      ++    .+....++++.-.. .|..++.|..||.|                       ++||.    ....+...+.|..
T Consensus      1203 iP----~~s~t~vTaLS~~~~~gn~i~AGfaDGsv-----------------------RvyD~R~a~~ds~v~~~R~h~~ 1255 (1387)
T KOG1517|consen 1203 IP----YGSSTLVTALSADLVHGNIIAAGFADGSV-----------------------RVYDRRMAPPDSLVCVYREHND 1255 (1387)
T ss_pred             cc----cCCCccceeecccccCCceEEEeecCCce-----------------------EEeecccCCccccceeecccCC
Confidence            53    44556666665443 37999999999999                       55554    2346777888998


Q ss_pred             C--EEEEEEcCC--CeEEEEECCCcEEEEeCCCCcEEEEEe---cC---CceEEEE-cCCCcEEEEecc
Q 006825          569 D--VLDLSWSKS--QHLLSSSMDKTVRLWHLSSKTCLKIFS---HS---DYDISLV-DRLMLRFAYGAF  626 (630)
Q Consensus       569 ~--V~sLafSPd--~~LaSgS~DgtVrIWDl~tg~~l~t~~---H~---~~V~sVa-s~~~~~lAsgs~  626 (630)
                      .  |..+.+-+.  +.|++||.||.|++||++.......+.   |-   +.++++. ++..-.+|+|+.
T Consensus      1256 ~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~ 1324 (1387)
T KOG1517|consen 1256 VEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA 1324 (1387)
T ss_pred             cccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc
Confidence            8  999999886  779999999999999999753222222   33   3488888 888888888874

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.13  E-value=8.5e-10  Score=114.53  Aligned_cols=258  Identities=12%  Similarity=0.060  Sum_probs=158.9

Q ss_pred             ceeeecCccceeEEEeec---ceEeecCCCccEeccc-CCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCC-----
Q 006825          332 FEMCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNG-SSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDER-----  402 (630)
Q Consensus       332 f~~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD-~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~-----  402 (630)
                      +..+.||...|+....-|   .+.+.|.|.++| +|- ...|+.-...+.---..++++.+.++-.+|..|-+..     
T Consensus        17 l~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvr-v~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtef   95 (404)
T KOG1409|consen   17 LSKIEGSQDDVNAAILIPKEEGVISVSEDRTVR-VWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEF   95 (404)
T ss_pred             hhhhcCchhhhhhheeccCCCCeEEccccceee-eEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEEEE
Confidence            467889999888877766   788999999999 883 3344433333322233445555555544444332221     


Q ss_pred             ------C----CccccCCcceEEEeecCCCe-----------------------------------------EEEecCCc
Q 006825          403 ------D----TSSEKGGRRSSSATDDSQDV-----------------------------------------SFHGQERV  431 (630)
Q Consensus       403 ------d----t~s~~gh~~~Vsa~~~s~d~-----------------------------------------l~Sgs~Dg  431 (630)
                            +    ...-..|...|.+.-|+...                                         .+.|...+
T Consensus        96 s~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~g  175 (404)
T KOG1409|consen   96 ALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDALYAFVGDHSG  175 (404)
T ss_pred             EhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeEEEEeccccc
Confidence                  0    11122233333333332221                                         23333333


Q ss_pred             EEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEE
Q 006825          432 RVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANG  511 (630)
Q Consensus       432 ~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svaf  511 (630)
                      .|-+-...   ......+.++.+|.+.|++++|.+..++|.+|..|..|.+||+--...+.-.    ..+|...|..+..
T Consensus       176 qvt~lr~~---~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~e----l~gh~~kV~~l~~  248 (404)
T KOG1409|consen  176 QITMLKLE---QNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYE----LQGHNDKVQALSY  248 (404)
T ss_pred             ceEEEEEe---ecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeee----eccchhhhhhhhh
Confidence            33333221   1223356789999999999999999999999999999999999655433332    4789999988888


Q ss_pred             CCCCCEEEEeeCCCeeeeeccccccc-ccccccCc-------------------c-------------------------
Q 006825          512 SPEPTSLSPKHLDNHLEKKRRGRSIN-RKSLSLDH-------------------M-------------------------  546 (630)
Q Consensus       512 Spdg~~lasgs~Dg~I~i~~~~~~~~-~~s~s~d~-------------------~-------------------------  546 (630)
                      .+--+.+.++..|+.|.+|+...... ...+-.+.                   .                         
T Consensus       249 ~~~t~~l~S~~edg~i~~w~mn~~r~etpewl~s~~cQ~c~qpffwn~~~m~~~k~~glr~h~crkcg~avc~~c~s~~~  328 (404)
T KOG1409|consen  249 AQHTRQLISCGEDGGIVVWNMNVKRVETPEWLDSDSCQKCNQPFFWNFRQMWDRKQLGLRQHHCRKCGKAVCGKCSSNRS  328 (404)
T ss_pred             hhhheeeeeccCCCeEEEEeccceeecCccccccchhhhhCchHHHHHHHHHhhhhhhhhhhhhhhhhhhcCcccccCcc
Confidence            87788899999999999998654211 00000000                   0                         


Q ss_pred             cc---------------ccEEEeCCCCceEEeccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCC
Q 006825          547 VV---------------PETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSS  597 (630)
Q Consensus       547 i~---------------~~~Vwdlsgk~l~tL~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~t  597 (630)
                      ..               ...+.+....++..+..-...|+.+.+-.. ++|+|++.|..|+|||++.
T Consensus       329 ~~p~mg~e~~vR~~~~c~~~i~~~~~t~LA~phei~tgItamhlqetlglLvTsG~~Rvi~iwd~~~  395 (404)
T KOG1409|consen  329 SYPTMGFEFSVRVCDSCYPTIKDEERTPLAIPHEIKTGITAMHLQETLGLLVTSGTDRVIKIWDVRS  395 (404)
T ss_pred             ccccccceeEEEEecccchhhhcCCCCccccccccccceeEEEhhhhccceeecCCceEEEEEechh
Confidence            00               002222333345554433345888888777 9999999999999999874

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.13  E-value=4.8e-09  Score=109.62  Aligned_cols=156  Identities=14%  Similarity=0.092  Sum_probs=113.1

Q ss_pred             ceeEEEeec---ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCe-EEeecCCCCCccccCCcceEEE
Q 006825          341 IVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHK-ERRSSDERDTSSEKGGRRSSSA  416 (630)
Q Consensus       341 ~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~-lasgS~D~dt~s~~gh~~~Vsa  416 (630)
                      -++-+++.|   .+|.+..|-+|| +++-+. ++..+++.--.+.|+++||-|-+.. ++.|                  
T Consensus       100 dlr~~aWhqH~~~fava~nddvVr-iy~kss-t~pt~Lks~sQrnvtclawRPlsaselavg------------------  159 (445)
T KOG2139|consen  100 DLRGVAWHQHIIAFAVATNDDVVR-IYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVG------------------  159 (445)
T ss_pred             ceeeEeechhhhhhhhhccCcEEE-EeccCC-CCCceecchhhcceeEEEeccCCcceeeee------------------
Confidence            467788888   588999999999 998766 7777888778889999999996542 2211                  


Q ss_pred             eecCCCeEEEecCCcEEEEEeCCCCcccce-------ee--eeEecccCcCEEEEEEccCCCEEEEEeC-CCcEEEEECc
Q 006825          417 TDDSQDVSFHGQERVRVRQYGKSCKDLTAL-------YK--CQEIQAHNGSIWSIKFSLDGRYLASAGE-DCVIHVWQVV  486 (630)
Q Consensus       417 ~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~-------~~--v~tL~gHt~~V~sVaFSpDG~~LASgS~-DgtIrVWDl~  486 (630)
                                 . ..-|.+|.....-....       .+  +-.-.|| .+|++|+|++||..|++++. |..|+|||..
T Consensus       160 -----------C-r~gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpd  226 (445)
T KOG2139|consen  160 -----------C-RAGICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPD  226 (445)
T ss_pred             -----------e-cceeEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCC
Confidence                       1 22256665432211100       01  1223566 68999999999999999985 5679999999


Q ss_pred             CCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccc
Q 006825          487 ESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGR  534 (630)
Q Consensus       487 tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~  534 (630)
                      ++..+...     .--.+.+.-+.|+||+.++.++.-|+..++|+..+
T Consensus       227 tg~~~pL~-----~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q  269 (445)
T KOG2139|consen  227 TGQKIPLI-----PKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQ  269 (445)
T ss_pred             CCCccccc-----ccCCCceeeEEEcCCCCEEEEecccceeeeehhcc
Confidence            98766542     23346788999999999999999999997775443

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.12  E-value=2.5e-09  Score=105.94  Aligned_cols=127  Identities=20%  Similarity=0.234  Sum_probs=94.0

Q ss_pred             CccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCc
Q 006825          378 SWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNG  457 (630)
Q Consensus       378 gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~  457 (630)
                      ...+.|.+++|+|+|+.++.                           +.|..+.+|.+||.+..      .+.++  +..
T Consensus        57 ~~~~~I~~~~WsP~g~~fav---------------------------i~g~~~~~v~lyd~~~~------~i~~~--~~~  101 (194)
T PF08662_consen   57 KKEGPIHDVAWSPNGNEFAV---------------------------IYGSMPAKVTLYDVKGK------KIFSF--GTQ  101 (194)
T ss_pred             cCCCceEEEEECcCCCEEEE---------------------------EEccCCcccEEEcCccc------EeEee--cCC
Confidence            34557999999999987752                           34555668999999633      33444  456


Q ss_pred             CEEEEEEccCCCEEEEEeCC---CcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccc
Q 006825          458 SIWSIKFSLDGRYLASAGED---CVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGR  534 (630)
Q Consensus       458 ~V~sVaFSpDG~~LASgS~D---gtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~  534 (630)
                      .+..|.|+|+|++|+.|+.+   |.|.+||+.+.+.+.+.      .|. .+..++|+|+|++++++......       
T Consensus       102 ~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~------~~~-~~t~~~WsPdGr~~~ta~t~~r~-------  167 (194)
T PF08662_consen  102 PRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTF------EHS-DATDVEWSPDGRYLATATTSPRL-------  167 (194)
T ss_pred             CceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeecc------ccC-cEEEEEEcCCCCEEEEEEeccce-------
Confidence            78999999999999999854   56999999987776652      333 46899999999999998654222       


Q ss_pred             cccccccccCccccccEEEeCCCCceEEe
Q 006825          535 SINRKSLSLDHMVVPETVFALSDKPICSF  563 (630)
Q Consensus       535 ~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL  563 (630)
                             ..+..+   +||+..|+.+...
T Consensus       168 -------~~dng~---~Iw~~~G~~l~~~  186 (194)
T PF08662_consen  168 -------RVDNGF---KIWSFQGRLLYKK  186 (194)
T ss_pred             -------eccccE---EEEEecCeEeEec
Confidence                   233444   8999988877654

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.10  E-value=1.2e-08  Score=101.09  Aligned_cols=117  Identities=19%  Similarity=0.327  Sum_probs=88.4

Q ss_pred             cCcCEEEEEEccCCCEEEEE--eCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCC---Ceeee
Q 006825          455 HNGSIWSIKFSLDGRYLASA--GEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLD---NHLEK  529 (630)
Q Consensus       455 Ht~~V~sVaFSpDG~~LASg--S~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~D---g~I~i  529 (630)
                      ..++|.+++|+|+|+.||..  ..++.|.+||+. ++.+..+       +...+..+.|+|+|++++.++.+   |.+  
T Consensus        58 ~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~-------~~~~~n~i~wsP~G~~l~~~g~~n~~G~l--  127 (194)
T PF08662_consen   58 KEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSF-------GTQPRNTISWSPDGRFLVLAGFGNLNGDL--  127 (194)
T ss_pred             CCCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEee-------cCCCceEEEECCCCCEEEEEEccCCCcEE--
Confidence            34579999999999987554  467899999996 5555443       23566789999999999998754   446  


Q ss_pred             ecccccccccccccCccccccEEEeC-CCCceEEeccCCCCEEEEEEcCC-CeEEEEE------CCCcEEEEeCCCCcEE
Q 006825          530 KRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSWSKS-QHLLSSS------MDKTVRLWHLSSKTCL  601 (630)
Q Consensus       530 ~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL~GHs~~V~sLafSPd-~~LaSgS------~DgtVrIWDl~tg~~l  601 (630)
                                           .+|+. +.+.+.+++ |. .++.++|+|+ ++|+++.      .|..++||+. .|+++
T Consensus       128 ---------------------~~wd~~~~~~i~~~~-~~-~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~-~G~~l  183 (194)
T PF08662_consen  128 ---------------------EFWDVRKKKKISTFE-HS-DATDVEWSPDGRYLATATTSPRLRVDNGFKIWSF-QGRLL  183 (194)
T ss_pred             ---------------------EEEECCCCEEeeccc-cC-cEEEEEEcCCCCEEEEEEeccceeccccEEEEEe-cCeEe
Confidence                                 78888 455665554 33 4789999999 8998876      4899999998 57777


Q ss_pred             EEEe
Q 006825          602 KIFS  605 (630)
Q Consensus       602 ~t~~  605 (630)
                      ....
T Consensus       184 ~~~~  187 (194)
T PF08662_consen  184 YKKP  187 (194)
T ss_pred             Eecc
Confidence            6543

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.06  E-value=4e-08  Score=108.64  Aligned_cols=214  Identities=10%  Similarity=0.010  Sum_probs=131.8

Q ss_pred             eeeecCccceeEEEeec---ceEeecCC---CccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCcc
Q 006825          333 EMCVGHSPIVQELMRRQ---NVEEGNKD---SFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSS  406 (630)
Q Consensus       333 ~~l~GHs~~V~~Lafs~---~laSgS~D---~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s  406 (630)
                      ..+..+...|...+|+|   .|+..+.+   ..+. +||+.+|+... +. .....+.+.+|+|||+.++-         
T Consensus       189 ~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~-~~dl~~g~~~~-l~-~~~g~~~~~~~SPDG~~la~---------  256 (427)
T PRK02889        189 QSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVY-VHDLATGRRRV-VA-NFKGSNSAPAWSPDGRTLAV---------  256 (427)
T ss_pred             eEeccCCCCcccceEcCCCCEEEEEEccCCCcEEE-EEECCCCCEEE-ee-cCCCCccceEECCCCCEEEE---------
Confidence            44566777888999998   56655543   3477 99999887643 32 33345668999999998762         


Q ss_pred             ccCCcceEEEeecCCCeEEEecCCc--EEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeC-CCcEEEE
Q 006825          407 EKGGRRSSSATDDSQDVSFHGQERV--RVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGE-DCVIHVW  483 (630)
Q Consensus       407 ~~gh~~~Vsa~~~s~d~l~Sgs~Dg--~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~-DgtIrVW  483 (630)
                                         +...++  .|++++..+++      .+.+..|.+.+....|+|||++|+..+. ++...||
T Consensus       257 -------------------~~~~~g~~~Iy~~d~~~~~------~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy  311 (427)
T PRK02889        257 -------------------ALSRDGNSQIYTVNADGSG------LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIY  311 (427)
T ss_pred             -------------------EEccCCCceEEEEECCCCC------cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEE
Confidence                               222233  35555655443      3445566666778899999998886664 4677777


Q ss_pred             ECc--CCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCC---eeeeecccccccccccccCccccccEEEeCCCC
Q 006825          484 QVV--ESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDN---HLEKKRRGRSINRKSLSLDHMVVPETVFALSDK  558 (630)
Q Consensus       484 Dl~--tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg---~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk  558 (630)
                      .+.  ++.. ..+.   +.+  ......+|+|+|++|+..+.++   .|                       .+|++.+.
T Consensus       312 ~~~~~~g~~-~~lt---~~g--~~~~~~~~SpDG~~Ia~~s~~~g~~~I-----------------------~v~d~~~g  362 (427)
T PRK02889        312 RMPASGGAA-QRVT---FTG--SYNTSPRISPDGKLLAYISRVGGAFKL-----------------------YVQDLATG  362 (427)
T ss_pred             EEECCCCce-EEEe---cCC--CCcCceEECCCCCEEEEEEccCCcEEE-----------------------EEEECCCC
Confidence            653  3332 2221   122  2233578999999998776543   23                       67777443


Q ss_pred             ceEEeccCCCCEEEEEEcCC-CeEEEEECCC-c--EEEEeCCCCcEEEEEe-cCCceEEEE
Q 006825          559 PICSFQGHLDDVLDLSWSKS-QHLLSSSMDK-T--VRLWHLSSKTCLKIFS-HSDYDISLV  614 (630)
Q Consensus       559 ~l~tL~GHs~~V~sLafSPd-~~LaSgS~Dg-t--VrIWDl~tg~~l~t~~-H~~~V~sVa  614 (630)
                      ....+..+ .......|+|| ++|+..+.++ .  +.+-++ +|+..+.+. +.+.+...+
T Consensus       363 ~~~~lt~~-~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~-~g~~~~~l~~~~g~~~~p~  421 (427)
T PRK02889        363 QVTALTDT-TRDESPSFAPNGRYILYATQQGGRSVLAAVSS-DGRIKQRLSVQGGDVREPS  421 (427)
T ss_pred             CeEEccCC-CCccCceECCCCCEEEEEEecCCCEEEEEEEC-CCCceEEeecCCCCCCCCc
Confidence            44444432 33467899999 7777776544 2  444445 455555554 444444433

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.04  E-value=1.1e-08  Score=115.42  Aligned_cols=212  Identities=15%  Similarity=0.055  Sum_probs=143.8

Q ss_pred             ccEecccCCCC-ceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCcEEEEEe
Q 006825          359 FDLNNNGSSGG-GMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYG  437 (630)
Q Consensus       359 tvr~vWD~~tG-~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd  437 (630)
                      .+. +|++... .....+  .....|.+++|+|.                            .+..++.|..+|.|.+||
T Consensus       223 ~~~-vW~~~~p~~Pe~~~--~~~s~v~~~~f~p~----------------------------~p~ll~gG~y~GqV~lWD  271 (555)
T KOG1587|consen  223 VLL-VWSLKNPNTPELVL--ESPSEVTCLKFCPF----------------------------DPNLLAGGCYNGQVVLWD  271 (555)
T ss_pred             eEE-EEecCCCCCceEEE--ecCCceeEEEeccC----------------------------CcceEEeeccCceEEEEE
Confidence            456 9998776 333333  46778888888884                            445578899999999999


Q ss_pred             CCCCccccee-eeeEecccCcCEEEEEEccCC--CEEEEEeCCCcEEEEECcCCceeeeee-ccc------ccCcccceE
Q 006825          438 KSCKDLTALY-KCQEIQAHNGSIWSIKFSLDG--RYLASAGEDCVIHVWQVVESERKGELL-EKQ------EDGHLNMLL  507 (630)
Q Consensus       438 ~~~~el~~~~-~v~tL~gHt~~V~sVaFSpDG--~~LASgS~DgtIrVWDl~tg~~~~~l~-~~~------~~gh~~~V~  507 (630)
                      .......... .....-.|..+|+.+.|-.+-  .-++|+|.||.|+.|++..-....+.. ...      .......+.
T Consensus       272 ~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t  351 (555)
T KOG1587|consen  272 LRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGAT  351 (555)
T ss_pred             ccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhccccccccccccccccccee
Confidence            9766542111 222345699999999997643  459999999999999886544322211 000      112234677


Q ss_pred             EEEECCC-CCEEEEeeCCCeeeeecccccccccccccCccccccEEEeCCCCceEEeccCCCCEEEEEEcCC--CeEEEE
Q 006825          508 LANGSPE-PTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS--QHLLSS  584 (630)
Q Consensus       508 svafSpd-g~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL~GHs~~V~sLafSPd--~~LaSg  584 (630)
                      ++.|.+. ...++.|...|.|..-.+.......              ...-+.+..+..|.+.|+++.++|=  ..++|+
T Consensus       352 ~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~--------------~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~  417 (555)
T KOG1587|consen  352 SLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAP--------------EVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSV  417 (555)
T ss_pred             eEeeccCCCceEEEEcCCcEEEEEeccCCcccc--------------cccccccccccccCcceEeeecCCCccceeeee
Confidence            8899875 6678889899988431111100000              0111445567789999999999996  566666


Q ss_pred             ECCCcEEEEeCC-CCcEEEEEe-cCCceEEEE-cC
Q 006825          585 SMDKTVRLWHLS-SKTCLKIFS-HSDYDISLV-DR  616 (630)
Q Consensus       585 S~DgtVrIWDl~-tg~~l~t~~-H~~~V~sVa-s~  616 (630)
                      + |.+||||... ...++..+. +.++|++++ +|
T Consensus       418 g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSp  451 (555)
T KOG1587|consen  418 G-DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSP  451 (555)
T ss_pred             c-cceeEeccccCCCCcchhhhhccceeeeeEEcC
Confidence            6 9999999998 667777777 999999999 44

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.04  E-value=3.3e-08  Score=107.74  Aligned_cols=205  Identities=14%  Similarity=0.017  Sum_probs=130.9

Q ss_pred             CccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCcEEEEEe
Q 006825          358 SFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYG  437 (630)
Q Consensus       358 ~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd  437 (630)
                      ..+. +||.. |...+.+. .+...+.+.+|+|||++++....+                          .....|++|+
T Consensus       170 ~~l~-~~d~~-g~~~~~l~-~~~~~~~~p~~Spdg~~la~~~~~--------------------------~~~~~i~v~d  220 (417)
T TIGR02800       170 YELQ-VADYD-GANPQTIT-RSREPILSPAWSPDGQKLAYVSFE--------------------------SGKPEIYVQD  220 (417)
T ss_pred             ceEE-EEcCC-CCCCEEee-cCCCceecccCCCCCCEEEEEEcC--------------------------CCCcEEEEEE
Confidence            3455 66764 44455565 567789999999999988743211                          1235799999


Q ss_pred             CCCCcccceeeeeEecccCcCEEEEEEccCCCEEE-EEeCCC--cEEEEECcCCceeeeeecccccCcccceEEEEECCC
Q 006825          438 KSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLA-SAGEDC--VIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPE  514 (630)
Q Consensus       438 ~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LA-SgS~Dg--tIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpd  514 (630)
                      +.+++.      ..+..+.+.+.+++|+|||+.|+ +.+.++  .|.+|++.++.....      ..+........|+|+
T Consensus       221 ~~~g~~------~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~l------~~~~~~~~~~~~s~d  288 (417)
T TIGR02800       221 LATGQR------EKVASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLTRL------TNGPGIDTEPSWSPD  288 (417)
T ss_pred             CCCCCE------EEeecCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCCEEEC------CCCCCCCCCEEECCC
Confidence            877642      23445666778899999998765 455544  588899987654322      223333446789999


Q ss_pred             CCEEEEeeCC-CeeeeecccccccccccccCccccccEEEeCCCCceEEeccCCCCEEEEEEcCC-CeEEEEECCC---c
Q 006825          515 PTSLSPKHLD-NHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDK---T  589 (630)
Q Consensus       515 g~~lasgs~D-g~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL~GHs~~V~sLafSPd-~~LaSgS~Dg---t  589 (630)
                      ++.|+..+.. +...+                     .++++.+.....+..+...+..+.|+|+ ++|+.++.++   .
T Consensus       289 g~~l~~~s~~~g~~~i---------------------y~~d~~~~~~~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~  347 (417)
T TIGR02800       289 GKSIAFTSDRGGSPQI---------------------YMMDADGGEVRRLTFRGGYNASPSWSPDGDLIAFVHREGGGFN  347 (417)
T ss_pred             CCEEEEEECCCCCceE---------------------EEEECCCCCEEEeecCCCCccCeEECCCCCEEEEEEccCCceE
Confidence            9988776543 22111                     4455544445555556667788999999 8888888776   8


Q ss_pred             EEEEeCCCCcEEEEEecCCceEEEE-cCCCcEEEEec
Q 006825          590 VRLWHLSSKTCLKIFSHSDYDISLV-DRLMLRFAYGA  625 (630)
Q Consensus       590 VrIWDl~tg~~l~t~~H~~~V~sVa-s~~~~~lAsgs  625 (630)
                      |.+||+.++.... +.....+.... .+++..+++..
T Consensus       348 i~~~d~~~~~~~~-l~~~~~~~~p~~spdg~~l~~~~  383 (417)
T TIGR02800       348 IAVMDLDGGGERV-LTDTGLDESPSFAPNGRMILYAT  383 (417)
T ss_pred             EEEEeCCCCCeEE-ccCCCCCCCceECCCCCEEEEEE
Confidence            9999998865433 33111222223 56666665543

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.03  E-value=8.1e-08  Score=104.72  Aligned_cols=207  Identities=12%  Similarity=0.012  Sum_probs=130.3

Q ss_pred             eeeecCccceeEEEeec---ceEeecCC---CccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCcc
Q 006825          333 EMCVGHSPIVQELMRRQ---NVEEGNKD---SFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSS  406 (630)
Q Consensus       333 ~~l~GHs~~V~~Lafs~---~laSgS~D---~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s  406 (630)
                      ..+..+...+....|+|   .|+-.+.+   ..+. +||+.+|+.....  .+...+.+++|+|||+.++....      
T Consensus       183 ~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~-v~d~~~g~~~~~~--~~~~~~~~~~~spDg~~l~~~~~------  253 (417)
T TIGR02800       183 QTITRSREPILSPAWSPDGQKLAYVSFESGKPEIY-VQDLATGQREKVA--SFPGMNGAPAFSPDGSKLAVSLS------  253 (417)
T ss_pred             EEeecCCCceecccCCCCCCEEEEEEcCCCCcEEE-EEECCCCCEEEee--cCCCCccceEECCCCCEEEEEEC------
Confidence            45566666788888888   45544432   5788 9999988654432  34556677999999987753211      


Q ss_pred             ccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCC-C--cEEEE
Q 006825          407 EKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGED-C--VIHVW  483 (630)
Q Consensus       407 ~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~D-g--tIrVW  483 (630)
                                          ......|++|+..++..      ..+..|...+....|+|||++|+..+.. +  .|.+|
T Consensus       254 --------------------~~~~~~i~~~d~~~~~~------~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~  307 (417)
T TIGR02800       254 --------------------KDGNPDIYVMDLDGKQL------TRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMM  307 (417)
T ss_pred             --------------------CCCCccEEEEECCCCCE------EECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEE
Confidence                                11234588898876642      3445565566678999999988776643 3  57778


Q ss_pred             ECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCC---eeeeecccccccccccccCccccccEEEeCCCCce
Q 006825          484 QVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDN---HLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPI  560 (630)
Q Consensus       484 Dl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg---~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l  560 (630)
                      ++.+++.. .+     ..+...+..+.|+|++++++....+.   .|                       .+|++.+...
T Consensus       308 d~~~~~~~-~l-----~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i-----------------------~~~d~~~~~~  358 (417)
T TIGR02800       308 DADGGEVR-RL-----TFRGGYNASPSWSPDGDLIAFVHREGGGFNI-----------------------AVMDLDGGGE  358 (417)
T ss_pred             ECCCCCEE-Ee-----ecCCCCccCeEECCCCCEEEEEEccCCceEE-----------------------EEEeCCCCCe
Confidence            88766533 22     22334566788999999998887664   33                       5556543334


Q ss_pred             EEeccCCCCEEEEEEcCC-CeEEEEECCC---cEEEEeCCCCcEEEEEe
Q 006825          561 CSFQGHLDDVLDLSWSKS-QHLLSSSMDK---TVRLWHLSSKTCLKIFS  605 (630)
Q Consensus       561 ~tL~GHs~~V~sLafSPd-~~LaSgS~Dg---tVrIWDl~tg~~l~t~~  605 (630)
                      ..+..+ .......|+|+ ++|+..+.++   .+.+.+. ++.....+.
T Consensus       359 ~~l~~~-~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~-~g~~~~~~~  405 (417)
T TIGR02800       359 RVLTDT-GLDESPSFAPNGRMILYATTRGGRGVLGLVST-DGRFRARLP  405 (417)
T ss_pred             EEccCC-CCCCCceECCCCCEEEEEEeCCCcEEEEEEEC-CCceeeECC
Confidence            444332 23456689999 7787777654   3444443 344444444

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.03  E-value=6.9e-10  Score=118.75  Aligned_cols=210  Identities=13%  Similarity=0.202  Sum_probs=159.1

Q ss_pred             EeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCc
Q 006825          352 EEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERV  431 (630)
Q Consensus       352 aSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg  431 (630)
                      +-|+..+-+- ..|+.|+.....+.  -...|+.|.|-.+-+++                              +..+..
T Consensus       145 llgGrKGHlA-a~Dw~t~~L~~Ei~--v~Etv~Dv~~LHneq~~------------------------------AVAQK~  191 (545)
T KOG1272|consen  145 LLGGRKGHLA-AFDWVTKKLHFEIN--VMETVRDVTFLHNEQFF------------------------------AVAQKK  191 (545)
T ss_pred             EecCCcccee-eeecccceeeeeee--hhhhhhhhhhhcchHHH------------------------------Hhhhhc
Confidence            4455556666 77778887776654  23456666666554444                              334455


Q ss_pred             EEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEE
Q 006825          432 RVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANG  511 (630)
Q Consensus       432 ~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svaf  511 (630)
                      -+.+||-..-+      ++.|+.| ..|..+.|-|---+|++++.-|.++.-|+.+|+.+..+     .--.+.+..+..
T Consensus       192 y~yvYD~~GtE------lHClk~~-~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~-----~t~~G~~~vm~q  259 (545)
T KOG1272|consen  192 YVYVYDNNGTE------LHCLKRH-IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASI-----RTGAGRTDVMKQ  259 (545)
T ss_pred             eEEEecCCCcE------Eeehhhc-CchhhhcccchhheeeecccCCceEEEeechhhhhHHH-----HccCCccchhhc
Confidence            68999876544      3446655 46899999999999999999999999999999988775     444567778888


Q ss_pred             CCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeC-CCCceEEeccCCCCEEEEEEcCC-CeEEEEECCCc
Q 006825          512 SPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKT  589 (630)
Q Consensus       512 Spdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL~GHs~~V~sLafSPd-~~LaSgS~Dgt  589 (630)
                      .|-...+-.|...|+|                       .+|.. ..+++..+..|.++|.+|++.++ .|+||.+.|..
T Consensus       260 NP~NaVih~GhsnGtV-----------------------SlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~  316 (545)
T KOG1272|consen  260 NPYNAVIHLGHSNGTV-----------------------SLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRK  316 (545)
T ss_pred             CCccceEEEcCCCceE-----------------------EecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecccccc
Confidence            8988899999999999                       78887 56788889999999999999999 99999999999


Q ss_pred             EEEEeCCCCcEEEEEe--cCCceEEEEcCCCcEEEEecceec
Q 006825          590 VRLWHLSSKTCLKIFS--HSDYDISLVDRLMLRFAYGAFLNV  629 (630)
Q Consensus       590 VrIWDl~tg~~l~t~~--H~~~V~sVas~~~~~lAsgs~~nI  629 (630)
                      |+|||++.-..+.++.  |...-.++.....+.++.|..++|
T Consensus       317 ~kIWDlR~~~ql~t~~tp~~a~~ls~SqkglLA~~~G~~v~i  358 (545)
T KOG1272|consen  317 VKIWDLRNFYQLHTYRTPHPASNLSLSQKGLLALSYGDHVQI  358 (545)
T ss_pred             eeEeeeccccccceeecCCCccccccccccceeeecCCeeee
Confidence            9999999988777775  444433444555555666665544

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.98  E-value=2.3e-08  Score=105.40  Aligned_cols=223  Identities=13%  Similarity=0.082  Sum_probs=155.5

Q ss_pred             cceeeecCccceeEEEeec-ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccccC
Q 006825          331 EFEMCVGHSPIVQELMRRQ-NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKG  409 (630)
Q Consensus       331 ef~~l~GHs~~V~~Lafs~-~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~g  409 (630)
                      +..++.+-+..|..++... .|.++-.++.+. +|..+.+.       -|.....-+|.-| |-+.+             
T Consensus        97 ~~~~~~l~~~~I~gl~~~dg~Litc~~sG~l~-~~~~k~~d-------~hss~l~~la~g~-g~~~~-------------  154 (412)
T KOG3881|consen   97 DAKTVSLGTKSIKGLKLADGTLITCVSSGNLQ-VRHDKSGD-------LHSSKLIKLATGP-GLYDV-------------  154 (412)
T ss_pred             cccccccccccccchhhcCCEEEEEecCCcEE-EEeccCCc-------cccccceeeecCC-ceeee-------------
Confidence            3445566677777777776 677777778888 88776543       2322222233222 11111             


Q ss_pred             CcceEEEeecCCCeEEEecCC--cEEEEEeCCCCcccceeeeeEeccc-----------CcCEEEEEEccC--CCEEEEE
Q 006825          410 GRRSSSATDDSQDVSFHGQER--VRVRQYGKSCKDLTALYKCQEIQAH-----------NGSIWSIKFSLD--GRYLASA  474 (630)
Q Consensus       410 h~~~Vsa~~~s~d~l~Sgs~D--g~VriWd~~~~el~~~~~v~tL~gH-----------t~~V~sVaFSpD--G~~LASg  474 (630)
                           .-.+-.+..+++|+..  ..+.+||+...       .+.+.+-           .-.++++.|-+.  ...|||+
T Consensus       155 -----r~~~~~p~Iva~GGke~~n~lkiwdle~~-------~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~  222 (412)
T KOG3881|consen  155 -----RQTDTDPYIVATGGKENINELKIWDLEQS-------KQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATI  222 (412)
T ss_pred             -----ccCCCCCceEecCchhcccceeeeecccc-------eeeeeccCCCCccccceeeeeeccceecCCCCCceEEEE
Confidence                 1111123446778888  78899988654       2223321           124678899887  8899999


Q ss_pred             eCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEe
Q 006825          475 GEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFA  554 (630)
Q Consensus       475 S~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwd  554 (630)
                      ..-+.||+||...+.+...-    +.--..++.++...|++++|+++-.-+.+                       ..||
T Consensus       223 T~~hqvR~YDt~~qRRPV~~----fd~~E~~is~~~l~p~gn~Iy~gn~~g~l-----------------------~~FD  275 (412)
T KOG3881|consen  223 TRYHQVRLYDTRHQRRPVAQ----FDFLENPISSTGLTPSGNFIYTGNTKGQL-----------------------AKFD  275 (412)
T ss_pred             ecceeEEEecCcccCcceeE----eccccCcceeeeecCCCcEEEEecccchh-----------------------heec
Confidence            99999999999876644322    24446889999999999999999888877                       7888


Q ss_pred             C-CCCceEE-eccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCCCcEEEEEecCCceEEEE
Q 006825          555 L-SDKPICS-FQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYDISLV  614 (630)
Q Consensus       555 l-sgk~l~t-L~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg~~l~t~~H~~~V~sVa  614 (630)
                      + .++.+.. |.|-++.|.+|..+|. .+|++++.|..|||+|+.+.+++....-....++|.
T Consensus       276 ~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvYvKs~lt~il  338 (412)
T KOG3881|consen  276 LRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYVKSRLTFIL  338 (412)
T ss_pred             ccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhhhhccccEEE
Confidence            8 4555544 8999999999999999 999999999999999999977765544333444444

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=98.97  E-value=1.9e-07  Score=96.87  Aligned_cols=295  Identities=12%  Similarity=0.008  Sum_probs=167.7

Q ss_pred             eecCCCCcccCCCccccccCCCCCcccccccEEEEECCCC--------------------cEEEEeeecCCCceeEEEEc
Q 006825          262 SINGNGNYIGNSGEVVEDFDGNGTAGVAEQGCLIKNLDNG--------------------KEFVVNEIQEDGTWKKVKEV  321 (630)
Q Consensus       262 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~LddG--------------------~~~~v~e~~~dg~~~~l~dv  321 (630)
                      +|||+|+||+..+++               ...|||..+-                    ++++.-.+..+++ ..+|++
T Consensus        15 ~fSp~g~yiAs~~~y---------------rlviRd~~tlq~~qlf~cldki~yieW~ads~~ilC~~yk~~~-vqvwsl   78 (447)
T KOG4497|consen   15 SFSPCGNYIASLSRY---------------RLVIRDSETLQLHQLFLCLDKIVYIEWKADSCHILCVAYKDPK-VQVWSL   78 (447)
T ss_pred             eECCCCCeeeeeeee---------------EEEEeccchhhHHHHHHHHHHhhheeeeccceeeeeeeeccce-EEEEEe
Confidence            899999999555543               3455553221                    2233333334444 335555


Q ss_pred             CCCceEeeecceeeecCccceeEEEeec----ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEe
Q 006825          322 GTGRQLTIEEFEMCVGHSPIVQELMRRQ----NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERR  397 (630)
Q Consensus       322 ~TG~~lt~eef~~l~GHs~~V~~Lafs~----~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~las  397 (630)
                      .--+.-     ..+-.-...+..+.++|    .|.+..-|-.+- +|.+.|.+.....-  -+..++.++|.|||++.+-
T Consensus        79 ~Qpew~-----ckIdeg~agls~~~WSPdgrhiL~tseF~lriT-VWSL~t~~~~~~~~--pK~~~kg~~f~~dg~f~ai  150 (447)
T KOG4497|consen   79 VQPEWY-----CKIDEGQAGLSSISWSPDGRHILLTSEFDLRIT-VWSLNTQKGYLLPH--PKTNVKGYAFHPDGQFCAI  150 (447)
T ss_pred             ecceeE-----EEeccCCCcceeeeECCCcceEeeeecceeEEE-EEEeccceeEEecc--cccCceeEEECCCCceeee
Confidence            433332     33333445566778888    677888888888 99998866544322  2335688999999998766


Q ss_pred             ecCCC--C---Cc---------cccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEE
Q 006825          398 SSDER--D---TS---------SEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIK  463 (630)
Q Consensus       398 gS~D~--d---t~---------s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVa  463 (630)
                      .+.-.  +   ..         ..+-.+-..+.+..+++       +.-+.+||.--.     +.+.. ....-.|..++
T Consensus       151 ~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPd-------g~~laVwd~~Le-----ykv~a-Ye~~lG~k~v~  217 (447)
T KOG4497|consen  151 LSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPD-------GNWLAVWDNVLE-----YKVYA-YERGLGLKFVE  217 (447)
T ss_pred             eecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCC-------CcEEEEecchhh-----heeee-eeeccceeEEE
Confidence            54332  1   00         01112222333344443       445667764211     11111 11224588999


Q ss_pred             EccCCCEEEEEeCCCcEEEEECcCCceeeeeeccc---------------------------------------------
Q 006825          464 FSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQ---------------------------------------------  498 (630)
Q Consensus       464 FSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~---------------------------------------------  498 (630)
                      |+|.+++|+.|+.|+.+||-+--+.+...++....                                             
T Consensus       218 wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE  297 (447)
T KOG4497|consen  218 WSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYE  297 (447)
T ss_pred             eccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhh
Confidence            99999999999999999997755444333321000                                             


Q ss_pred             ----------------ccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeCCCCceEE
Q 006825          499 ----------------EDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICS  562 (630)
Q Consensus       499 ----------------~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~t  562 (630)
                                      +......+-.++|++|..++++- .|.                    ....-.+|++....++.
T Consensus       298 ~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTr-nd~--------------------~PnalW~Wdlq~l~l~a  356 (447)
T KOG4497|consen  298 QQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATR-NDK--------------------YPNALWLWDLQNLKLHA  356 (447)
T ss_pred             hhhcceeeecccCCCCCCCcccccceeeecCCceEEeee-cCC--------------------CCceEEEEechhhhhhh
Confidence                            00001122334455554444442 111                    01112688887666666


Q ss_pred             eccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCCCcEEEEEecCCceEEEE
Q 006825          563 FQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYDISLV  614 (630)
Q Consensus       563 L~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg~~l~t~~H~~~V~sVa  614 (630)
                      .--...+|....|.|. ..|+.+-.-..+++|-..-..++..-...-.|..+.
T Consensus       357 vLiQk~piraf~WdP~~prL~vctg~srLY~W~psg~~~V~vP~~GF~i~~l~  409 (447)
T KOG4497|consen  357 VLIQKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPRVVGVPKKGFNIQKLQ  409 (447)
T ss_pred             hhhhccceeEEEeCCCCceEEEEcCCceEEEEcCCCceEEecCCCCceeeeEE
Confidence            5557778999999998 666655555679999876655555444444455555

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=98.94  E-value=6.8e-08  Score=113.24  Aligned_cols=245  Identities=15%  Similarity=0.075  Sum_probs=156.4

Q ss_pred             eeeecCccceeEEEeec----ceEeecCCCccEecccCCC-----CceeEEecC-CccCCEEEEEEcCCCCeEEeecCCC
Q 006825          333 EMCVGHSPIVQELMRRQ----NVEEGNKDSFDLNNNGSSG-----GGMKSKKKG-SWFKSIRTVASSVTGHKERRSSDER  402 (630)
Q Consensus       333 ~~l~GHs~~V~~Lafs~----~laSgS~D~tvr~vWD~~t-----G~~~~~lk~-gH~~~V~sVAfSpdG~~lasgS~D~  402 (630)
                      ..|..|+..|..++-++    +++|||.|+||| +|+...     +.....+.. --..++.+|.+-+.|..+|-++.|+
T Consensus      1042 AhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVK-vW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG 1120 (1431)
T KOG1240|consen 1042 AHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVK-VWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDG 1120 (1431)
T ss_pred             ehhhhccccccceeecCCCCceEEEecCCceEE-EeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCC
Confidence            67788999999999876    799999999999 999753     222333331 2356788999999999999998887


Q ss_pred             -------CC---c----------cccCCcceEEEeecCCC----eEEEecCCcEEEEEeCCCCcccceeeeeE--ecccC
Q 006825          403 -------DT---S----------SEKGGRRSSSATDDSQD----VSFHGQERVRVRQYGKSCKDLTALYKCQE--IQAHN  456 (630)
Q Consensus       403 -------dt---~----------s~~gh~~~Vsa~~~s~d----~l~Sgs~Dg~VriWd~~~~el~~~~~v~t--L~gHt  456 (630)
                             +.   .          ..+.....|..-++...    +++-+..-+.|..||.....-     ..+  ..-..
T Consensus      1121 ~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~-----~w~lk~~~~h 1195 (1431)
T KOG1240|consen 1121 SVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHD-----AWRLKNQLRH 1195 (1431)
T ss_pred             eEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhh-----HHhhhcCccc
Confidence                   11   0          02222224444444332    467777888899999865421     122  23345


Q ss_pred             cCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCC---CCEEEEeeC--CCeeeeec
Q 006825          457 GSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPE---PTSLSPKHL--DNHLEKKR  531 (630)
Q Consensus       457 ~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpd---g~~lasgs~--Dg~I~i~~  531 (630)
                      +.|++++.+|.+.+|++|..-|.+-+||++=+..+...    ..++..++..+..+|-   ....++++.  .+.|.+|+
T Consensus      1196 G~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw----~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn 1271 (1431)
T KOG1240|consen 1196 GLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSW----EHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWN 1271 (1431)
T ss_pred             cceeEEEecCCceEEEEecCCceEEEEEeecCceeecc----cCcccCCcceEEeeccCCCCceEEEecccCCCceeeee
Confidence            89999999999999999999999999999866665553    2344466766666654   244444433  45565665


Q ss_pred             ccccccccccccCccccccEEEeCCCCceEEec--------cCCC-CEEEEEEcCCCeEEEEECCCcEEEEeCCCC
Q 006825          532 RGRSINRKSLSLDHMVVPETVFALSDKPICSFQ--------GHLD-DVLDLSWSKSQHLLSSSMDKTVRLWHLSSK  598 (630)
Q Consensus       532 ~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL~--------GHs~-~V~sLafSPd~~LaSgS~DgtVrIWDl~tg  598 (630)
                      ...+.-..           .+|..++.+.....        .+.- .+.+.--.+++++++|+.|..||.||...-
T Consensus      1272 ~~~g~~~~-----------vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p 1336 (1431)
T KOG1240|consen 1272 METGLRQT-----------VLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRP 1336 (1431)
T ss_pred             cccCcceE-----------EEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCc
Confidence            54421111           23332222221111        1111 122322234489999999999999998653

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=98.93  E-value=5.2e-08  Score=100.65  Aligned_cols=217  Identities=10%  Similarity=-0.026  Sum_probs=154.9

Q ss_pred             cceeEEEeec---ceEeecCCCccEecccCCCC---ceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccccCCcce
Q 006825          340 PIVQELMRRQ---NVEEGNKDSFDLNNNGSSGG---GMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRS  413 (630)
Q Consensus       340 ~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG---~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~  413 (630)
                      ..|++.||.+   .+|.+-.-.-+. |+.....   +..++++ .|...|..|.|+|.+.+|++++.|            
T Consensus        11 ~pitchAwn~drt~iAv~~~~~evh-iy~~~~~~~w~~~htls-~Hd~~vtgvdWap~snrIvtcs~d------------   76 (361)
T KOG1523|consen   11 EPITCHAWNSDRTQIAVSPNNHEVH-IYSMLGADLWEPAHTLS-EHDKIVTGVDWAPKSNRIVTCSHD------------   76 (361)
T ss_pred             CceeeeeecCCCceEEeccCCceEE-EEEecCCCCceeceehh-hhCcceeEEeecCCCCceeEccCC------------
Confidence            5678888877   566666666666 7765443   4677888 899999999999988777665544            


Q ss_pred             EEEeecCCCeEEEecCCcEEEEEeC-CCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceee
Q 006825          414 SSATDDSQDVSFHGQERVRVRQYGK-SCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKG  492 (630)
Q Consensus       414 Vsa~~~s~d~l~Sgs~Dg~VriWd~-~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~  492 (630)
                                       ...++|.. ..++   ....-.|..|..++++|.|+|.+++||+||.-+.|-||=++....-.
T Consensus        77 -----------------rnayVw~~~~~~~---WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWW  136 (361)
T KOG1523|consen   77 -----------------RNAYVWTQPSGGT---WKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWW  136 (361)
T ss_pred             -----------------CCccccccCCCCe---eccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEeccccee
Confidence                             44677765 2222   22345677899999999999999999999999999999886543321


Q ss_pred             eeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccc-cccccccccCccccccEEEeC---CCCceEEeccCCC
Q 006825          493 ELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGR-SINRKSLSLDHMVVPETVFAL---SDKPICSFQGHLD  568 (630)
Q Consensus       493 ~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~-~~~~~s~s~d~~i~~~~Vwdl---sgk~l~tL~GHs~  568 (630)
                      . -......+...|.++.|+|.+-+++.|+.|+..++...-- ...       ... ...-|.-   -|+++.++....+
T Consensus       137 V-sKhikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vd-------ekp-ap~pWgsk~PFG~lm~E~~~~gg  207 (361)
T KOG1523|consen  137 V-SKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVD-------EKP-APTPWGSKMPFGQLMSEASSSGG  207 (361)
T ss_pred             h-hhhhCCccccceeeeeccCCcceecccccCcceeEEEEeeeccc-------cCC-CCCCCccCCcHHHHHHhhccCCC
Confidence            1 0111345667899999999999999999999886543210 000       000 0022332   2455566666778


Q ss_pred             CEEEEEEcCC-CeEEEEECCCcEEEEeCCCCc
Q 006825          569 DVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKT  599 (630)
Q Consensus       569 ~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg~  599 (630)
                      .|..+.|+|+ ..|+-.+.|.+|.+=|.....
T Consensus       208 wvh~v~fs~sG~~lawv~Hds~v~~~da~~p~  239 (361)
T KOG1523|consen  208 WVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPS  239 (361)
T ss_pred             ceeeeEeCCCCCEeeEecCCCceEEeecCCCc
Confidence            9999999999 999999999999999987653

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=98.92  E-value=1.1e-08  Score=107.57  Aligned_cols=170  Identities=10%  Similarity=0.091  Sum_probs=123.9

Q ss_pred             eEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccce-eeee
Q 006825          372 KSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTAL-YKCQ  450 (630)
Q Consensus       372 ~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~-~~v~  450 (630)
                      ++-+. +|.+.|+++-||.+|++|++|                             +.|..+++|.+..--.... ..++
T Consensus        49 qKD~~-~H~GCiNAlqFS~N~~~L~SG-----------------------------GDD~~~~~W~~de~~~~k~~KPI~   98 (609)
T KOG4227|consen   49 QKDVR-EHTGCINALQFSHNDRFLASG-----------------------------GDDMHGRVWNVDELMVRKTPKPIG   98 (609)
T ss_pred             hhhhh-hhccccceeeeccCCeEEeec-----------------------------CCcceeeeechHHHHhhcCCCCce
Confidence            34445 899999999999988888655                             5556799998742211111 1233


Q ss_pred             Eec-ccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeee
Q 006825          451 EIQ-AHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEK  529 (630)
Q Consensus       451 tL~-gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i  529 (630)
                      ... .|...|.|++|....++|.+|+.+++|.+-|+++.+.+..+   ......+.|+.+..+|-..++++.+.++.|  
T Consensus        99 ~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~---~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V--  173 (609)
T KOG4227|consen   99 VMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIETKQSIYVA---NENNNRGDVYHMDQHPTDNTLIVVTRAKLV--  173 (609)
T ss_pred             eccCccccceEEEEEccCCeeEecCCCcceeEeeecccceeeeee---cccCcccceeecccCCCCceEEEEecCceE--
Confidence            332 24478999999999999999999999999999988876653   123334589999999999999999999999  


Q ss_pred             ecccccccccccccCccccccEEEeCCCCc----eEEeccCCCCEEEEEEcCC--CeEEEEECCCcEEEEeCCC
Q 006825          530 KRRGRSINRKSLSLDHMVVPETVFALSDKP----ICSFQGHLDDVLDLSWSKS--QHLLSSSMDKTVRLWHLSS  597 (630)
Q Consensus       530 ~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~----l~tL~GHs~~V~sLafSPd--~~LaSgS~DgtVrIWDl~t  597 (630)
                                           .+|+....+    +.-+.......+.+-|+|-  .+|++.+.-+-+.|||.+.
T Consensus       174 ---------------------~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~  226 (609)
T KOG4227|consen  174 ---------------------SFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRM  226 (609)
T ss_pred             ---------------------EEEeccCCCCCCceeeecCCCccceeeeecCCCceeEEeccccCCCCceeecc
Confidence                                 566652211    1112233445678899997  8889999999999999753

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=98.91  E-value=1.3e-08  Score=102.79  Aligned_cols=146  Identities=17%  Similarity=0.139  Sum_probs=105.6

Q ss_pred             ceEeecCCCccEecccCCCCceeEEec---------CCccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecC
Q 006825          350 NVEEGNKDSFDLNNNGSSGGGMKSKKK---------GSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDS  420 (630)
Q Consensus       350 ~laSgS~D~tvr~vWD~~tG~~~~~lk---------~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s  420 (630)
                      .|+.|-.++.+- +||+.++..+..++         ..|...|.+|.|.+.                             
T Consensus       167 lllaGyEsghvv-~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~-----------------------------  216 (323)
T KOG0322|consen  167 LLLAGYESGHVV-IWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASS-----------------------------  216 (323)
T ss_pred             EEEEeccCCeEE-EEEccCCceeeccccccccccchhhccCcceeeeechh-----------------------------
Confidence            578888889998 99999985544443         145555555544431                             


Q ss_pred             CCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeeccccc
Q 006825          421 QDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQED  500 (630)
Q Consensus       421 ~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~  500 (630)
                      .+.-++|+.+.++..|.+.... ..+....++.--.-.|..+.+-||++.|||+|+|+.||||..++...+..|     .
T Consensus       217 ~~rGisgga~dkl~~~Sl~~s~-gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVL-----k  290 (323)
T KOG0322|consen  217 CDRGISGGADDKLVMYSLNHST-GSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVL-----K  290 (323)
T ss_pred             hcCCcCCCccccceeeeecccc-CcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhh-----h
Confidence            1123566667777777764321 111111222223345889999999999999999999999999999888774     8


Q ss_pred             CcccceEEEEECCCCCEEEEeeCCCeeeeec
Q 006825          501 GHLNMLLLANGSPEPTSLSPKHLDNHLEKKR  531 (630)
Q Consensus       501 gh~~~V~svafSpdg~~lasgs~Dg~I~i~~  531 (630)
                      .|...|.+++|+|+..++|.++.|+.|.+|+
T Consensus       291 yHsagvn~vAfspd~~lmAaaskD~rISLWk  321 (323)
T KOG0322|consen  291 YHSAGVNAVAFSPDCELMAAASKDARISLWK  321 (323)
T ss_pred             hhhcceeEEEeCCCCchhhhccCCceEEeee
Confidence            8999999999999999999999999995553

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=98.88  E-value=2e-08  Score=109.30  Aligned_cols=169  Identities=14%  Similarity=0.178  Sum_probs=119.5

Q ss_pred             EEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccC-CCEEEEEeCCCcEEEEECcCC--------------
Q 006825          424 SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLD-GRYLASAGEDCVIHVWQVVES--------------  488 (630)
Q Consensus       424 l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpD-G~~LASgS~DgtIrVWDl~tg--------------  488 (630)
                      +..|-..+.|.+.+....+...++.- ...--+..|+||.|-|. ..+++.+-.+|.+.++|..--              
T Consensus       188 llIGf~tGqvq~idp~~~~~sklfne-~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~  266 (636)
T KOG2394|consen  188 LLIGFTTGQVQLIDPINFEVSKLFNE-ERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDG  266 (636)
T ss_pred             eEEeeccCceEEecchhhHHHHhhhh-cccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCC
Confidence            44555566677776554443332211 11113478999999993 445566678999999976311              


Q ss_pred             ceeeeeeccc---------ccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeC-CCC
Q 006825          489 ERKGELLEKQ---------EDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDK  558 (630)
Q Consensus       489 ~~~~~l~~~~---------~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk  558 (630)
                      .....+....         +.--...|...+|+|||++||+.+.|+.+                       +||+. +.+
T Consensus       267 ~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfL-----------------------RvF~fdt~e  323 (636)
T KOG2394|consen  267 DQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFL-----------------------RIFDFDTQE  323 (636)
T ss_pred             CeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceE-----------------------EEeeccHHH
Confidence            1001100000         00112356788999999999999999999                       88888 556


Q ss_pred             ceEEeccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCCCcEEEEEe-cCCceEEEE-cC
Q 006825          559 PICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYDISLV-DR  616 (630)
Q Consensus       559 ~l~tL~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg~~l~t~~-H~~~V~sVa-s~  616 (630)
                      ++..++.--+..+||+|||| +||++|+.|--|.||.+..++.+..=. |.++|..|+ +|
T Consensus       324 Llg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDp  384 (636)
T KOG2394|consen  324 LLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDP  384 (636)
T ss_pred             HHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEeccccccceeeEeecc
Confidence            66666666678999999999 999999999999999999999888776 999999999 65

>PRK00178 tolB translocation protein TolB; Provisional

Probab=98.88  E-value=3.5e-07  Score=100.76  Aligned_cols=203  Identities=14%  Similarity=0.009  Sum_probs=122.2

Q ss_pred             cEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCcEEEEEeCC
Q 006825          360 DLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKS  439 (630)
Q Consensus       360 vr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~  439 (630)
                      +. ++|...+. .+.+. .|...+...+|||||++|+..+.+                          .....|++|++.
T Consensus       181 l~-~~d~~g~~-~~~l~-~~~~~~~~p~wSpDG~~la~~s~~--------------------------~~~~~l~~~~l~  231 (430)
T PRK00178        181 LQ-RSDYDGAR-AVTLL-QSREPILSPRWSPDGKRIAYVSFE--------------------------QKRPRIFVQNLD  231 (430)
T ss_pred             EE-EECCCCCC-ceEEe-cCCCceeeeeECCCCCEEEEEEcC--------------------------CCCCEEEEEECC
Confidence            44 66776444 45555 567789999999999988743322                          112468899987


Q ss_pred             CCcccceeeeeEecccCcCEEEEEEccCCCEEE-EEeCCC--cEEEEECcCCceeeeeecccccCcccceEEEEECCCCC
Q 006825          440 CKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLA-SAGEDC--VIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPT  516 (630)
Q Consensus       440 ~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LA-SgS~Dg--tIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~  516 (630)
                      +++.      +.+....+.+...+|+|||++|+ +...++  .|.+||+.++... .+     ..+........|+|||+
T Consensus       232 ~g~~------~~l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~-~l-----t~~~~~~~~~~~spDg~  299 (430)
T PRK00178        232 TGRR------EQITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLS-RV-----TNHPAIDTEPFWGKDGR  299 (430)
T ss_pred             CCCE------EEccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeE-Ec-----ccCCCCcCCeEECCCCC
Confidence            7643      22333344556789999999877 555555  5888899877643 22     23334455678999999


Q ss_pred             EEEEeeCC-CeeeeecccccccccccccCccccccEEEeCCCCceEEeccCCCCEEEEEEcCC-CeEEEEECC-C--cEE
Q 006825          517 SLSPKHLD-NHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMD-K--TVR  591 (630)
Q Consensus       517 ~lasgs~D-g~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL~GHs~~V~sLafSPd-~~LaSgS~D-g--tVr  591 (630)
                      .++..+.. +...+                     .++++.+..+..+...........|+|+ ++|+..+.+ +  .|.
T Consensus       300 ~i~f~s~~~g~~~i---------------------y~~d~~~g~~~~lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~  358 (430)
T PRK00178        300 TLYFTSDRGGKPQI---------------------YKVNVNGGRAERVTFVGNYNARPRLSADGKTLVMVHRQDGNFHVA  358 (430)
T ss_pred             EEEEEECCCCCceE---------------------EEEECCCCCEEEeecCCCCccceEECCCCCEEEEEEccCCceEEE
Confidence            88766532 22211                     3445532223333212223345789999 777766543 3  588


Q ss_pred             EEeCCCCcEEEEEecCCceEEEE-cCCCcEEEEec
Q 006825          592 LWHLSSKTCLKIFSHSDYDISLV-DRLMLRFAYGA  625 (630)
Q Consensus       592 IWDl~tg~~l~t~~H~~~V~sVa-s~~~~~lAsgs  625 (630)
                      +||+.+++.. .+.+........ +|++..+++..
T Consensus       359 ~~dl~tg~~~-~lt~~~~~~~p~~spdg~~i~~~~  392 (430)
T PRK00178        359 AQDLQRGSVR-ILTDTSLDESPSVAPNGTMLIYAT  392 (430)
T ss_pred             EEECCCCCEE-EccCCCCCCCceECCCCCEEEEEE
Confidence            8999888643 333221212233 66777766653

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=98.87  E-value=7.3e-08  Score=105.65  Aligned_cols=145  Identities=14%  Similarity=0.182  Sum_probs=104.9

Q ss_pred             EEEecCCcEEEEEeCCCCcccc-eeeeeEecccCcC-----EEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeecc
Q 006825          424 SFHGQERVRVRQYGKSCKDLTA-LYKCQEIQAHNGS-----IWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEK  497 (630)
Q Consensus       424 l~Sgs~Dg~VriWd~~~~el~~-~~~v~tL~gHt~~-----V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~  497 (630)
                      ++.|..+|.|-.||..++.... +.....+..|.+.     |+++.|+.+|-.++.|...|.|.|+|+++.+++..-   
T Consensus       190 la~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~k---  266 (703)
T KOG2321|consen  190 LACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVK---  266 (703)
T ss_pred             EEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeec---
Confidence            6778889999999998775321 1122233445554     999999999999999999999999999988766541   


Q ss_pred             cccCcccceEEEEECCC--CCEEEEeeCCCeeeeecccccccccccccCccccccEEEeC-CCCceEEeccCCCCEEEEE
Q 006825          498 QEDGHLNMLLLANGSPE--PTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLS  574 (630)
Q Consensus       498 ~~~gh~~~V~svafSpd--g~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL~GHs~~V~sLa  574 (630)
                       ..+..-+|..+.|.+.  +..+++. ....+                       +||+. +|++...++ .+..|+.++
T Consensus       267 -dh~~e~pi~~l~~~~~~~q~~v~S~-Dk~~~-----------------------kiWd~~~Gk~~asiE-pt~~lND~C  320 (703)
T KOG2321|consen  267 -DHGYELPIKKLDWQDTDQQNKVVSM-DKRIL-----------------------KIWDECTGKPMASIE-PTSDLNDFC  320 (703)
T ss_pred             -ccCCccceeeecccccCCCceEEec-chHHh-----------------------hhcccccCCceeecc-ccCCcCcee
Confidence             2333456777777655  3333332 22333                       88987 888887776 445599999


Q ss_pred             EcCC-CeEEEEECCCcEEEEeCCC
Q 006825          575 WSKS-QHLLSSSMDKTVRLWHLSS  597 (630)
Q Consensus       575 fSPd-~~LaSgS~DgtVrIWDl~t  597 (630)
                      +-|+ ++++++-.+..+..+=+..
T Consensus       321 ~~p~sGm~f~Ane~~~m~~yyiP~  344 (703)
T KOG2321|consen  321 FVPGSGMFFTANESSKMHTYYIPS  344 (703)
T ss_pred             eecCCceEEEecCCCcceeEEccc
Confidence            9999 9999999888887765543

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=98.87  E-value=1.6e-08  Score=108.93  Aligned_cols=257  Identities=14%  Similarity=0.113  Sum_probs=173.2

Q ss_pred             CceeEEEEcCCCceEeeecceeeecCccceeEEEeec-----ceEeecCCCccEeccc-CCCCcee-EEecCCccCCEEE
Q 006825          313 GTWKKVKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQ-----NVEEGNKDSFDLNNNG-SSGGGMK-SKKKGSWFKSIRT  385 (630)
Q Consensus       313 g~~~~l~dv~TG~~lt~eef~~l~GHs~~V~~Lafs~-----~laSgS~D~tvr~vWD-~~tG~~~-~~lk~gH~~~V~s  385 (630)
                      -...++||=.+++++    +.-..||-.-|-+.-|-|     .+++.+.|+.+| +-- ..+|.+. .+....|.+.|.-
T Consensus       163 D~~vv~WdW~~~~~~----l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr-~s~i~~t~~~e~t~rl~~h~g~vhk  237 (559)
T KOG1334|consen  163 DLQVVVWDWVSGSPK----LSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVR-VSEILETGYVENTKRLAPHEGPVHK  237 (559)
T ss_pred             cceEEeehhhccCcc----cccccccccchhhhhccCCCCCcCceeccccCcee-eeeeccccceecceecccccCccce
Confidence            344556776666665    122357887777766877     699999999999 543 4566655 3333479999999


Q ss_pred             EEEcCCCC-eEEeecCCC-----CCcc---------ccCCcc---eEEEeecCCC---eEEEecCCcEEEEEeCCCCccc
Q 006825          386 VASSVTGH-KERRSSDER-----DTSS---------EKGGRR---SSSATDDSQD---VSFHGQERVRVRQYGKSCKDLT  444 (630)
Q Consensus       386 VAfSpdG~-~lasgS~D~-----dt~s---------~~gh~~---~Vsa~~~s~d---~l~Sgs~Dg~VriWd~~~~el~  444 (630)
                      +|.-|+.. .+.+.+.|.     +...         .+.+..   ....++..+.   .++.|+.|--+|+||...-...
T Consensus       238 lav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e  317 (559)
T KOG1334|consen  238 LAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKE  317 (559)
T ss_pred             eeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhc
Confidence            99999765 466777666     1111         112222   2233333332   3788999999999987532211


Q ss_pred             ------ceeeeeEecc-cCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCce--------eeeeecccccCccc--ceE
Q 006825          445 ------ALYKCQEIQA-HNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESER--------KGELLEKQEDGHLN--MLL  507 (630)
Q Consensus       445 ------~~~~v~tL~g-Ht~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~--------~~~l~~~~~~gh~~--~V~  507 (630)
                            ..++.+.|.. ..-.|++++|+.++.-|.++-.|--|.++.-.-+.-        ...+....+.||.+  .|.
T Consensus       318 ~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVK  397 (559)
T KOG1334|consen  318 ENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVK  397 (559)
T ss_pred             cccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccc
Confidence                  2223333333 223589999998877676677788899995432211        01222222578854  366


Q ss_pred             EEEE-CCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeC-CCCceEEeccCCCCEEEEEEcCC-CeEEEE
Q 006825          508 LANG-SPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSWSKS-QHLLSS  584 (630)
Q Consensus       508 svaf-Spdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL~GHs~~V~sLafSPd-~~LaSg  584 (630)
                      .+.| -|...++++|++-|.|                       .||+- +++.|+-++|-..-|+||.-+|- -.|||+
T Consensus       398 gVNFfGPrsEyVvSGSDCGhI-----------------------FiW~K~t~eii~~MegDr~VVNCLEpHP~~PvLAsS  454 (559)
T KOG1334|consen  398 GVNFFGPRSEYVVSGSDCGHI-----------------------FIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVLASS  454 (559)
T ss_pred             eeeeccCccceEEecCccceE-----------------------EEEecchhHHHHHhhcccceEeccCCCCCCchhhcc
Confidence            7776 5778999999999999                       77776 67888888887779999999998 999999


Q ss_pred             ECCCcEEEEeCCC
Q 006825          585 SMDKTVRLWHLSS  597 (630)
Q Consensus       585 S~DgtVrIWDl~t  597 (630)
                      +.|.-||||-..+
T Consensus       455 Gid~DVKIWTP~~  467 (559)
T KOG1334|consen  455 GIDHDVKIWTPLT  467 (559)
T ss_pred             CCccceeeecCCc
Confidence            9999999998744

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=98.83  E-value=3.4e-08  Score=104.60  Aligned_cols=122  Identities=25%  Similarity=0.252  Sum_probs=94.7

Q ss_pred             CcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeeccccc
Q 006825          456 NGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRS  535 (630)
Q Consensus       456 t~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~  535 (630)
                      ..+|..+.++......-.++....+.+|.+..+.+...      .||...+..|+++||+++|+++-.|.+|++....  
T Consensus       110 ~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~~~~------lGhvSml~dVavS~D~~~IitaDRDEkIRvs~yp--  181 (390)
T KOG3914|consen  110 PTAISFIREDTSVLVADKAGDVYSFDILSADSGRCEPI------LGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYP--  181 (390)
T ss_pred             cceeeeeeccceEEEEeecCCceeeeeecccccCcchh------hhhhhhhheeeecCCCCEEEEecCCceEEEEecC--
Confidence            34555666655555555677888888998877554443      6999999999999999999999999999543222  


Q ss_pred             ccccccccCccccccEEEeCCCCceEE-eccCCCCEEEEEEcCCCeEEEEECCCcEEEEeCCCCcEEEEEe
Q 006825          536 INRKSLSLDHMVVPETVFALSDKPICS-FQGHLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFS  605 (630)
Q Consensus       536 ~~~~s~s~d~~i~~~~Vwdlsgk~l~t-L~GHs~~V~sLafSPd~~LaSgS~DgtVrIWDl~tg~~l~t~~  605 (630)
                                          .--.+.. +.||+.-|..++.-++..|+|||.|++|++||+.+|+++.++.
T Consensus       182 --------------------a~f~IesfclGH~eFVS~isl~~~~~LlS~sGD~tlr~Wd~~sgk~L~t~d  232 (390)
T KOG3914|consen  182 --------------------ATFVIESFCLGHKEFVSTISLTDNYLLLSGSGDKTLRLWDITSGKLLDTCD  232 (390)
T ss_pred             --------------------cccchhhhccccHhheeeeeeccCceeeecCCCCcEEEEecccCCcccccc
Confidence                                1122222 3589999999999988889999999999999999999998775

>PRK00178 tolB translocation protein TolB; Provisional

Probab=98.82  E-value=1.5e-06  Score=95.91  Aligned_cols=215  Identities=10%  Similarity=-0.031  Sum_probs=127.9

Q ss_pred             eeeecCccceeEEEeec---ceEeecCC---CccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCcc
Q 006825          333 EMCVGHSPIVQELMRRQ---NVEEGNKD---SFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSS  406 (630)
Q Consensus       333 ~~l~GHs~~V~~Lafs~---~laSgS~D---~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s  406 (630)
                      ..+..|...+....|+|   .|+-.+.+   ..+. +|++.+|+... +. ...+.+...+|+|||++++-....     
T Consensus       192 ~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~-~~~l~~g~~~~-l~-~~~g~~~~~~~SpDG~~la~~~~~-----  263 (430)
T PRK00178        192 VTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIF-VQNLDTGRREQ-IT-NFEGLNGAPAWSPDGSKLAFVLSK-----  263 (430)
T ss_pred             eEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEE-EEECCCCCEEE-cc-CCCCCcCCeEECCCCCEEEEEEcc-----
Confidence            34455666788888888   45554433   3466 78998887544 22 233445578999999988632111     


Q ss_pred             ccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeC-CC--cEEEE
Q 006825          407 EKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGE-DC--VIHVW  483 (630)
Q Consensus       407 ~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~-Dg--tIrVW  483 (630)
                                           .....|++||..+++.      ..+..+...+....|+|||+.|+..+. ++  .|.+|
T Consensus       264 ---------------------~g~~~Iy~~d~~~~~~------~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~  316 (430)
T PRK00178        264 ---------------------DGNPEIYVMDLASRQL------SRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKV  316 (430)
T ss_pred             ---------------------CCCceEEEEECCCCCe------EEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEE
Confidence                                 1123688899887643      345566666778899999998776653 33  57777


Q ss_pred             ECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCC-eeeeecccccccccccccCccccccEEEeCCCCceEE
Q 006825          484 QVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDN-HLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICS  562 (630)
Q Consensus       484 Dl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg-~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~t  562 (630)
                      ++.+++.....    ..+  .......|+|+|+.++...... ...+                     .++++.+.....
T Consensus       317 d~~~g~~~~lt----~~~--~~~~~~~~Spdg~~i~~~~~~~~~~~l---------------------~~~dl~tg~~~~  369 (430)
T PRK00178        317 NVNGGRAERVT----FVG--NYNARPRLSADGKTLVMVHRQDGNFHV---------------------AAQDLQRGSVRI  369 (430)
T ss_pred             ECCCCCEEEee----cCC--CCccceEECCCCCEEEEEEccCCceEE---------------------EEEECCCCCEEE
Confidence            88777643321    112  2233578999999988775432 1100                     456664333344


Q ss_pred             eccCCCCEEEEEEcCC-CeEEEEECC-C--cEEEEeCCCCcEEEEEe-cCCceE
Q 006825          563 FQGHLDDVLDLSWSKS-QHLLSSSMD-K--TVRLWHLSSKTCLKIFS-HSDYDI  611 (630)
Q Consensus       563 L~GHs~~V~sLafSPd-~~LaSgS~D-g--tVrIWDl~tg~~l~t~~-H~~~V~  611 (630)
                      +. +........|+|+ ++|+..+.+ +  .|.++++. |...+.+. +.+.+.
T Consensus       370 lt-~~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~-g~~~~~l~~~~g~~~  421 (430)
T PRK00178        370 LT-DTSLDESPSVAPNGTMLIYATRQQGRGVLMLVSIN-GRVRLPLPTAQGEVR  421 (430)
T ss_pred             cc-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECC-CCceEECcCCCCCcC
Confidence            43 2222335689999 777665543 3  46666764 44444444 334443

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=98.81  E-value=4.6e-08  Score=101.27  Aligned_cols=212  Identities=16%  Similarity=0.080  Sum_probs=134.4

Q ss_pred             EEEcCCCCeEEeecCCC----CCccccCCc--------ceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEec
Q 006825          386 VASSVTGHKERRSSDER----DTSSEKGGR--------RSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQ  453 (630)
Q Consensus       386 VAfSpdG~~lasgS~D~----dt~s~~gh~--------~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~  453 (630)
                      +.|||+|+++|+.++-+    ++.++.-|+        .-+--.+++--.+.....+++|.+|++...+.     ...+.
T Consensus        14 c~fSp~g~yiAs~~~yrlviRd~~tlq~~qlf~cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew-----~ckId   88 (447)
T KOG4497|consen   14 CSFSPCGNYIASLSRYRLVIRDSETLQLHQLFLCLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEW-----YCKID   88 (447)
T ss_pred             eeECCCCCeeeeeeeeEEEEeccchhhHHHHHHHHHHhhheeeeccceeeeeeeeccceEEEEEeeccee-----EEEec
Confidence            68999999999988765    433322221        11222234444477788899999999876653     23466


Q ss_pred             ccCcCEEEEEEccCCC-EEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeee---e
Q 006825          454 AHNGSIWSIKFSLDGR-YLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLE---K  529 (630)
Q Consensus       454 gHt~~V~sVaFSpDG~-~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~---i  529 (630)
                      .-...+.++.|||||+ +|.+...|-.|.||.+.+......      .-....+..++|+|||++.+.++.-....   +
T Consensus        89 eg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~------~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i  162 (447)
T KOG4497|consen   89 EGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLL------PHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQI  162 (447)
T ss_pred             cCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEe------cccccCceeEEECCCCceeeeeecccHHHHHHH
Confidence            6778899999999995 666778899999999988765433      22334568899999999988876443211   1


Q ss_pred             ecccccccccccccCccccccEEEeCCCCceEEe---------ccCC-CCEEEEEEcCC-CeEEEEECCCcEEEEeCCCC
Q 006825          530 KRRGRSINRKSLSLDHMVVPETVFALSDKPICSF---------QGHL-DDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSK  598 (630)
Q Consensus       530 ~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL---------~GHs-~~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg  598 (630)
                      ......+..+.+..+..-....-|...|.-+...         .-|. -.|..++|+|. ++|+.|+.|+.+||-+--+-
T Consensus       163 ~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tW  242 (447)
T KOG4497|consen  163 SSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTW  242 (447)
T ss_pred             HhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeeeeeccceeEEEeccccceEEeeccchhhhhhceeee
Confidence            1111112222333332222223333333322221         1122 45889999997 99999999999999887776


Q ss_pred             cEEEEEecCC
Q 006825          599 TCLKIFSHSD  608 (630)
Q Consensus       599 ~~l~t~~H~~  608 (630)
                      +....|-|-.
T Consensus       243 k~f~eflhl~  252 (447)
T KOG4497|consen  243 KPFGEFLHLC  252 (447)
T ss_pred             eehhhhccch
Confidence            6665555443

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=98.81  E-value=3.2e-07  Score=94.01  Aligned_cols=160  Identities=16%  Similarity=0.129  Sum_probs=110.3

Q ss_pred             ccCCcceEEEeecC---CCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEcc-CCCEEEEEeCCCcEEE
Q 006825          407 EKGGRRSSSATDDS---QDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSL-DGRYLASAGEDCVIHV  482 (630)
Q Consensus       407 ~~gh~~~Vsa~~~s---~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSp-DG~~LASgS~DgtIrV  482 (630)
                      .+.|...+....|+   ++.+++|+.|+.+..||.+...   .+.-+..+-|+..|.+|.-+| .+.+|+||+.|-.|++
T Consensus       161 wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~---~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~  237 (339)
T KOG0280|consen  161 WKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPK---TFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRV  237 (339)
T ss_pred             ccccceeeeeeecccCCCceEEecCCCceEEEEEecCCc---ceeeecceeeecceEEEecCCCCCceEEEeccccceee
Confidence            45566555555554   4558999999999999997332   223344677999999999987 7889999999999999


Q ss_pred             EECcC-CceeeeeecccccCcccceEEEEECCC--CCEEEEeeCCCeeeeecccccccccccccCccccccEEEeC---C
Q 006825          483 WQVVE-SERKGELLEKQEDGHLNMLLLANGSPE--PTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL---S  556 (630)
Q Consensus       483 WDl~t-g~~~~~l~~~~~~gh~~~V~svafSpd--g~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl---s  556 (630)
                      ||.+. ++++..      ....+.|+.+..+|.  +++++++-..|.                        +|-+.   .
T Consensus       238 ~DtRnm~kPl~~------~~v~GGVWRi~~~p~~~~~lL~~CMh~G~------------------------ki~~~~~~~  287 (339)
T KOG0280|consen  238 LDTRNMGKPLFK------AKVGGGVWRIKHHPEIFHRLLAACMHNGA------------------------KILDSSDKV  287 (339)
T ss_pred             eehhcccCcccc------CccccceEEEEecchhhhHHHHHHHhcCc------------------------eEEEecccc
Confidence            99974 333333      333488999999986  445555544442                        22222   1


Q ss_pred             CC---ceEEeccCCCCEEEEEEcCC-CeEEEEEC-CCcEE-EEeCCCCc
Q 006825          557 DK---PICSFQGHLDDVLDLSWSKS-QHLLSSSM-DKTVR-LWHLSSKT  599 (630)
Q Consensus       557 gk---~l~tL~GHs~~V~sLafSPd-~~LaSgS~-DgtVr-IWDl~tg~  599 (630)
                      .+   .+..++.|.+-+..-.|... .+|+|++. |+.|+ +|-.-++.
T Consensus       288 ~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~~  336 (339)
T KOG0280|consen  288 LEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHITGE  336 (339)
T ss_pred             cchheeeeccccccceeeccccccccceeeeeeccccceeeeeeeccCC
Confidence            22   34456778887888888444 78999874 88866 88766654

>PRK04792 tolB translocation protein TolB; Provisional

Probab=98.80  E-value=1.5e-06  Score=96.92  Aligned_cols=215  Identities=11%  Similarity=-0.033  Sum_probs=123.6

Q ss_pred             eecCccceeEEEeec---ceEeecCC---CccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCcccc
Q 006825          335 CVGHSPIVQELMRRQ---NVEEGNKD---SFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEK  408 (630)
Q Consensus       335 l~GHs~~V~~Lafs~---~laSgS~D---~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~  408 (630)
                      +..+...+....|+|   .|+-.+.+   ..+. +||+.+|+.... . .........+|+|||+.|+.....       
T Consensus       213 l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~-~~dl~tg~~~~l-t-~~~g~~~~~~wSPDG~~La~~~~~-------  282 (448)
T PRK04792        213 LLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIF-VQDIYTQVREKV-T-SFPGINGAPRFSPDGKKLALVLSK-------  282 (448)
T ss_pred             eecCCCcccCceECCCCCEEEEEEecCCCcEEE-EEECCCCCeEEe-c-CCCCCcCCeeECCCCCEEEEEEeC-------
Confidence            344555677788888   45444332   2466 789888875332 2 122233468999999987632111       


Q ss_pred             CCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeC-CC--cEEEEEC
Q 006825          409 GGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGE-DC--VIHVWQV  485 (630)
Q Consensus       409 gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~-Dg--tIrVWDl  485 (630)
                                         .....|++|+..+++.      ..+..|...+...+|+|||++|+..+. ++  .|.++|+
T Consensus       283 -------------------~g~~~Iy~~dl~tg~~------~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl  337 (448)
T PRK04792        283 -------------------DGQPEIYVVDIATKAL------TRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNL  337 (448)
T ss_pred             -------------------CCCeEEEEEECCCCCe------EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEEC
Confidence                               1123588888877643      345556667788999999998876553 34  4666677


Q ss_pred             cCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCC-eeeeecccccccccccccCccccccEEEeCCCCceEEec
Q 006825          486 VESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDN-HLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQ  564 (630)
Q Consensus       486 ~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg-~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL~  564 (630)
                      .+++... +.   +.++  .....+|+|||++|+..+.+. ...+                     .++++.+..+..+.
T Consensus       338 ~~g~~~~-Lt---~~g~--~~~~~~~SpDG~~l~~~~~~~g~~~I---------------------~~~dl~~g~~~~lt  390 (448)
T PRK04792        338 ASGKVSR-LT---FEGE--QNLGGSITPDGRSMIMVNRTNGKFNI---------------------ARQDLETGAMQVLT  390 (448)
T ss_pred             CCCCEEE-Ee---cCCC--CCcCeeECCCCCEEEEEEecCCceEE---------------------EEEECCCCCeEEcc
Confidence            7665432 21   1222  223568999999988765432 2211                     33444333333333


Q ss_pred             cCCCCEEEEEEcCC-CeEEEEEC-CCc--EEEEeCCCCcEEEEEe-cCCceEEE
Q 006825          565 GHLDDVLDLSWSKS-QHLLSSSM-DKT--VRLWHLSSKTCLKIFS-HSDYDISL  613 (630)
Q Consensus       565 GHs~~V~sLafSPd-~~LaSgS~-Dgt--VrIWDl~tg~~l~t~~-H~~~V~sV  613 (630)
                      ... ......|+|+ ++|+..+. ++.  +.+++. +|...+.+. +.+.+...
T Consensus       391 ~~~-~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~-~G~~~~~l~~~~g~~~~p  442 (448)
T PRK04792        391 STR-LDESPSVAPNGTMVIYSTTYQGKQVLAAVSI-DGRFKARLPAGQGEVKSP  442 (448)
T ss_pred             CCC-CCCCceECCCCCEEEEEEecCCceEEEEEEC-CCCceEECcCCCCCcCCC
Confidence            221 2234589999 76665544 443  666776 566666665 44444433

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=98.79  E-value=4.9e-06  Score=90.58  Aligned_cols=274  Identities=12%  Similarity=-0.015  Sum_probs=155.3

Q ss_pred             CCCcEEEEeeecCCCceeEEEEcCCCceEeeecceeeecCccceeEEEeec---ceEeecCCCccEecccCCCCceeEEe
Q 006825          299 DNGKEFVVNEIQEDGTWKKVKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKK  375 (630)
Q Consensus       299 ddG~~~~v~e~~~dg~~~~l~dv~TG~~lt~eef~~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~l  375 (630)
                      +.+..|+|.+.+. |. ..+-|..|.+.+     .++......--.++|+|   ++...+.|+.+. ++|+.+++.+.++
T Consensus         3 ~~~~l~~V~~~~~-~~-v~viD~~t~~~~-----~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vs-viD~~~~~~v~~i   74 (369)
T PF02239_consen    3 DTGNLFYVVERGS-GS-VAVIDGATNKVV-----ARIPTGGAPHAGLKFSPDGRYLYVANRDGTVS-VIDLATGKVVATI   74 (369)
T ss_dssp             -GGGEEEEEEGGG-TE-EEEEETTT-SEE-----EEEE-STTEEEEEE-TT-SSEEEEEETTSEEE-EEETTSSSEEEEE
T ss_pred             CCccEEEEEecCC-CE-EEEEECCCCeEE-----EEEcCCCCceeEEEecCCCCEEEEEcCCCeEE-EEECCcccEEEEE
Confidence            3455676665433 22 457788888888     55554333344577887   566667899999 9999999999988


Q ss_pred             cCCccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecc-
Q 006825          376 KGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQA-  454 (630)
Q Consensus       376 k~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~g-  454 (630)
                      +.|-  .-+.+++|+||++++.                            +....+.+.++|.++.+.     ++++.. 
T Consensus        75 ~~G~--~~~~i~~s~DG~~~~v----------------------------~n~~~~~v~v~D~~tle~-----v~~I~~~  119 (369)
T PF02239_consen   75 KVGG--NPRGIAVSPDGKYVYV----------------------------ANYEPGTVSVIDAETLEP-----VKTIPTG  119 (369)
T ss_dssp             E-SS--EEEEEEE--TTTEEEE----------------------------EEEETTEEEEEETTT--E-----EEEEE--
T ss_pred             ecCC--CcceEEEcCCCCEEEE----------------------------EecCCCceeEeccccccc-----eeecccc
Confidence            8443  4578999999998863                            344567899999877653     333332 


Q ss_pred             ------cCcCEEEEEEccCCCEEEEEeCC-CcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEe-eCCCe
Q 006825          455 ------HNGSIWSIKFSLDGRYLASAGED-CVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPK-HLDNH  526 (630)
Q Consensus       455 ------Ht~~V~sVaFSpDG~~LASgS~D-gtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasg-s~Dg~  526 (630)
                            ....+.+|..+|....++..-.| +.|.+-|..+...+..-    ............|+|++++++.+ .....
T Consensus       120 ~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~----~i~~g~~~~D~~~dpdgry~~va~~~sn~  195 (369)
T PF02239_consen  120 GMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVT----TIKVGRFPHDGGFDPDGRYFLVAANGSNK  195 (369)
T ss_dssp             EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEE----EEE--TTEEEEEE-TTSSEEEEEEGGGTE
T ss_pred             cccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEecccccccee----eecccccccccccCcccceeeecccccce
Confidence                  34568899999988866666655 66666676655433221    12223456678999999987765 33344


Q ss_pred             eeeecccccccccccccCcc---------c--c---------------------ccEEEeC-CCCceEEeccCCCCEEEE
Q 006825          527 LEKKRRGRSINRKSLSLDHM---------V--V---------------------PETVFAL-SDKPICSFQGHLDDVLDL  573 (630)
Q Consensus       527 I~i~~~~~~~~~~s~s~d~~---------i--~---------------------~~~Vwdl-sgk~l~tL~GHs~~V~sL  573 (630)
                      |.+.+.........+.....         .  .                     +..+|+. ..+.++++...... .-+
T Consensus       196 i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi  274 (369)
T PF02239_consen  196 IAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFI  274 (369)
T ss_dssp             EEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---E
T ss_pred             eEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCc-cee
Confidence            54444333211111100000         0  0                     0122333 34567777766666 777


Q ss_pred             EEcCC-CeEEEE----ECCCcEEEEeCCCCcEEEEEe--cCCceEEEE-cCCCcE
Q 006825          574 SWSKS-QHLLSS----SMDKTVRLWHLSSKTCLKIFS--HSDYDISLV-DRLMLR  620 (630)
Q Consensus       574 afSPd-~~LaSg----S~DgtVrIWDl~tg~~l~t~~--H~~~V~sVa-s~~~~~  620 (630)
                      .-+|+ .+|...    ....+|.|+|..+.+.+.++.  -...+..+. ++++..
T Consensus       275 ~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~  329 (369)
T PF02239_consen  275 KTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKE  329 (369)
T ss_dssp             E--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSE
T ss_pred             ecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCE
Confidence            88999 888776    456899999999998888876  222355555 554443

...

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=98.75  E-value=7.6e-07  Score=97.86  Aligned_cols=253  Identities=13%  Similarity=0.119  Sum_probs=161.9

Q ss_pred             ecCccceeEEEeec----ceEeecCCCccEecccCCCCceeEEecCCccC--CEEEEEEcCCCCeEEeecCCCCC--ccc
Q 006825          336 VGHSPIVQELMRRQ----NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFK--SIRTVASSVTGHKERRSSDERDT--SSE  407 (630)
Q Consensus       336 ~GHs~~V~~Lafs~----~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~--~V~sVAfSpdG~~lasgS~D~dt--~s~  407 (630)
                      .+|...-+.+-.+|    .+|+|-.-+.|+ ++|+++-..+..   .|+.  .|.=.-.+.|-...+-=-.|+..  ...
T Consensus        48 fe~p~ast~ik~s~DGqY~lAtG~YKP~ik-vydlanLSLKFE---RhlDae~V~feiLsDD~SK~v~L~~DR~IefHak  123 (703)
T KOG2321|consen   48 FEMPTASTRIKVSPDGQYLLATGTYKPQIK-VYDLANLSLKFE---RHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAK  123 (703)
T ss_pred             cCCccccceeEecCCCcEEEEecccCCceE-EEEcccceeeee---ecccccceeEEEeccchhhheEeecCceeeehhh
Confidence            35666666777777    699999999999 999976544432   3433  33333333333333222223211  111


Q ss_pred             cC---------CcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCC
Q 006825          408 KG---------GRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDC  478 (630)
Q Consensus       408 ~g---------h~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~Dg  478 (630)
                      -|         ..+.+.--.++.+ ++.++....|.-+++..+.+     +..|.-..+.|++|..++-..+|+.|+.||
T Consensus       124 ~G~hy~~RIP~~GRDm~y~~~scD-ly~~gsg~evYRlNLEqGrf-----L~P~~~~~~~lN~v~in~~hgLla~Gt~~g  197 (703)
T KOG2321|consen  124 YGRHYRTRIPKFGRDMKYHKPSCD-LYLVGSGSEVYRLNLEQGRF-----LNPFETDSGELNVVSINEEHGLLACGTEDG  197 (703)
T ss_pred             cCeeeeeecCcCCccccccCCCcc-EEEeecCcceEEEEcccccc-----ccccccccccceeeeecCccceEEecccCc
Confidence            11         0111111122223 44444455566677766643     456666779999999999999999999999


Q ss_pred             cEEEEECcCCceeeeeecc-cccCcc-----cceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEE
Q 006825          479 VIHVWQVVESERKGELLEK-QEDGHL-----NMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETV  552 (630)
Q Consensus       479 tIrVWDl~tg~~~~~l~~~-~~~gh~-----~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~V  552 (630)
                      +|-.||.++...+..+... ....|.     ..|+++.|..+|..+++|...|.+                       .|
T Consensus       198 ~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v-----------------------~i  254 (703)
T KOG2321|consen  198 VVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSV-----------------------LI  254 (703)
T ss_pred             eEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcE-----------------------EE
Confidence            9999999988777665311 112233     348999999999999999999999                       77


Q ss_pred             EeC-CCCceE-EeccCCCCEEEEEEcCC-CeEEEEECC-CcEEEEeCCCCcEEEEEecCCceEEEE-cCCCcEE
Q 006825          553 FAL-SDKPIC-SFQGHLDDVLDLSWSKS-QHLLSSSMD-KTVRLWHLSSKTCLKIFSHSDYDISLV-DRLMLRF  621 (630)
Q Consensus       553 wdl-sgk~l~-tL~GHs~~V~sLafSPd-~~LaSgS~D-gtVrIWDl~tg~~l~t~~H~~~V~sVa-s~~~~~l  621 (630)
                      +++ +.+++. .-++..-+|..+.|.+. +.=...++| ..+||||-.+|+....+.....+..++ -|....+
T Consensus       255 yDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk~~asiEpt~~lND~C~~p~sGm~  328 (703)
T KOG2321|consen  255 YDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSMDKRILKIWDECTGKPMASIEPTSDLNDFCFVPGSGMF  328 (703)
T ss_pred             EEcccCCceeecccCCccceeeecccccCCCceEEecchHHhhhcccccCCceeeccccCCcCceeeecCCceE
Confidence            887 444443 23445567999999875 332233344 577999999999998888555577777 3333333

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=98.75  E-value=2e-07  Score=108.05  Aligned_cols=141  Identities=17%  Similarity=0.159  Sum_probs=114.3

Q ss_pred             ceEeecCCCccEecccCCCCceeE-EecCCccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEec
Q 006825          350 NVEEGNKDSFDLNNNGSSGGGMKS-KKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQ  428 (630)
Q Consensus       350 ~laSgS~D~tvr~vWD~~tG~~~~-~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs  428 (630)
                      ++++|+-=+.+. +|+.. +..+. .++ ||.+.|-++.++-||.++++.|+|                           
T Consensus       147 ~i~~gsv~~~ii-vW~~~-~dn~p~~l~-GHeG~iF~i~~s~dg~~i~s~SdD---------------------------  196 (967)
T KOG0974|consen  147 YIASGSVFGEII-VWKPH-EDNKPIRLK-GHEGSIFSIVTSLDGRYIASVSDD---------------------------  196 (967)
T ss_pred             EEEeccccccEE-EEecc-ccCCcceec-ccCCceEEEEEccCCcEEEEEecC---------------------------
Confidence            788888889999 99987 43333 466 999999999999999998765554                           


Q ss_pred             CCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccCcc-cceE
Q 006825          429 ERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHL-NMLL  507 (630)
Q Consensus       429 ~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~-~~V~  507 (630)
                        .++|+|++.+.+..    ..+.-+|+..||.+.|.|.  +|+|+++|.++++|+... .....     +.+|. ..+.
T Consensus       197 --RsiRlW~i~s~~~~----~~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~~-~~l~~-----y~~h~g~~iw  262 (967)
T KOG0974|consen  197 --RSIRLWPIDSREVL----GCTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGVNG-TQLEV-----YDEHSGKGIW  262 (967)
T ss_pred             --cceeeeeccccccc----CcccccccceeEEEEeccc--eeEEeccceEEEEEeccc-ceehh-----hhhhhhccee
Confidence              57999999887642    2456799999999999998  899999999999997643 33333     35664 4688


Q ss_pred             EEEECCCCCEEEEeeCCCeeeeecccc
Q 006825          508 LANGSPEPTSLSPKHLDNHLEKKRRGR  534 (630)
Q Consensus       508 svafSpdg~~lasgs~Dg~I~i~~~~~  534 (630)
                      .++..+....+++++.|+.+++|+...
T Consensus       263 ~~~~~~~~~~~vT~g~Ds~lk~~~l~~  289 (967)
T KOG0974|consen  263 KIAVPIGVIIKVTGGNDSTLKLWDLNG  289 (967)
T ss_pred             EEEEcCCceEEEeeccCcchhhhhhhc
Confidence            999999999999999999999888644

>PRK04792 tolB translocation protein TolB; Provisional

Probab=98.71  E-value=2.3e-06  Score=95.32  Aligned_cols=201  Identities=14%  Similarity=0.044  Sum_probs=115.6

Q ss_pred             cccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCc
Q 006825          363 NNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKD  442 (630)
Q Consensus       363 vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~e  442 (630)
                      ++|.... ..+.+. .+...+.+.+|||||++++..+.+                          .....|++||..+++
T Consensus       202 i~d~dG~-~~~~l~-~~~~~~~~p~wSPDG~~La~~s~~--------------------------~g~~~L~~~dl~tg~  253 (448)
T PRK04792        202 IADYDGY-NEQMLL-RSPEPLMSPAWSPDGRKLAYVSFE--------------------------NRKAEIFVQDIYTQV  253 (448)
T ss_pred             EEeCCCC-CceEee-cCCCcccCceECCCCCEEEEEEec--------------------------CCCcEEEEEECCCCC
Confidence            4465443 334455 567788899999999988743322                          112468889987764


Q ss_pred             ccceeeeeEecccCcCEEEEEEccCCCEEEE-EeCCCc--EEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEE
Q 006825          443 LTALYKCQEIQAHNGSIWSIKFSLDGRYLAS-AGEDCV--IHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLS  519 (630)
Q Consensus       443 l~~~~~v~tL~gHt~~V~sVaFSpDG~~LAS-gS~Dgt--IrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~la  519 (630)
                      ..   .+..+.   +.....+|+|||+.|+. .+.++.  |.+||+.+++.. .+     ..+.......+|+||++.|+
T Consensus       254 ~~---~lt~~~---g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~-~l-----t~~~~~~~~p~wSpDG~~I~  321 (448)
T PRK04792        254 RE---KVTSFP---GINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKALT-RI-----TRHRAIDTEPSWHPDGKSLI  321 (448)
T ss_pred             eE---EecCCC---CCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeE-EC-----ccCCCCccceEECCCCCEEE
Confidence            31   122233   33457899999997764 566775  777788776543 32     23334556789999999887


Q ss_pred             EeeC-CCeeeeecccccccccccccCccccccEEEeCCCCceEEeccCCCCEEEEEEcCC-CeEEEEEC-CC--cEEEEe
Q 006825          520 PKHL-DNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSM-DK--TVRLWH  594 (630)
Q Consensus       520 sgs~-Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL~GHs~~V~sLafSPd-~~LaSgS~-Dg--tVrIWD  594 (630)
                      ..+. ++...+                     .++++.+.....+.-+.......+|+|+ ++|+..+. ++  .|.++|
T Consensus       322 f~s~~~g~~~I---------------------y~~dl~~g~~~~Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~d  380 (448)
T PRK04792        322 FTSERGGKPQI---------------------YRVNLASGKVSRLTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQD  380 (448)
T ss_pred             EEECCCCCceE---------------------EEEECCCCCEEEEecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEE
Confidence            7653 232211                     3445533333333222223345789999 77765554 44  345568


Q ss_pred             CCCCcEEEEEecCCceEEEE-cCCCcEEEEec
Q 006825          595 LSSKTCLKIFSHSDYDISLV-DRLMLRFAYGA  625 (630)
Q Consensus       595 l~tg~~l~t~~H~~~V~sVa-s~~~~~lAsgs  625 (630)
                      +.+++... +.......... +|++..+++..
T Consensus       381 l~~g~~~~-lt~~~~d~~ps~spdG~~I~~~~  411 (448)
T PRK04792        381 LETGAMQV-LTSTRLDESPSVAPNGTMVIYST  411 (448)
T ss_pred             CCCCCeEE-ccCCCCCCCceECCCCCEEEEEE
Confidence            87776432 32111111223 66666666543

>PRK01029 tolB translocation protein TolB; Provisional

Probab=98.71  E-value=6.8e-06  Score=91.12  Aligned_cols=189  Identities=15%  Similarity=0.087  Sum_probs=111.3

Q ss_pred             cccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCc
Q 006825          363 NNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKD  442 (630)
Q Consensus       363 vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~e  442 (630)
                      +.++.+|+..+ +. ...+.....+|||||++|+-.++..                        |..+..+.+|+...+.
T Consensus       215 ~~~l~~g~~~~-lt-~~~g~~~~p~wSPDG~~Laf~s~~~------------------------g~~di~~~~~~~~~g~  268 (428)
T PRK01029        215 LGSLENPAGKK-IL-ALQGNQLMPTFSPRKKLLAFISDRY------------------------GNPDLFIQSFSLETGA  268 (428)
T ss_pred             EEECCCCCceE-ee-cCCCCccceEECCCCCEEEEEECCC------------------------CCcceeEEEeecccCC
Confidence            44777775433 22 2334455689999999887543210                        1123344556655421


Q ss_pred             ccceeeeeEecccCcCEEEEEEccCCCEEEEEe-CCCcEEEEEC--cC-CceeeeeecccccCcccceEEEEECCCCCEE
Q 006825          443 LTALYKCQEIQAHNGSIWSIKFSLDGRYLASAG-EDCVIHVWQV--VE-SERKGELLEKQEDGHLNMLLLANGSPEPTSL  518 (630)
Q Consensus       443 l~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS-~DgtIrVWDl--~t-g~~~~~l~~~~~~gh~~~V~svafSpdg~~l  518 (630)
                      ...  ..+...++.+.+...+|+|||++|+..+ .++...||.+  .. +.....+     ..+...+....|+|||+.|
T Consensus       269 ~g~--~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~l-----t~~~~~~~~p~wSPDG~~L  341 (428)
T PRK01029        269 IGK--PRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLL-----TKKYRNSSCPAWSPDGKKI  341 (428)
T ss_pred             CCc--ceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEe-----ccCCCCccceeECCCCCEE
Confidence            111  1122333334556789999999877665 5676666654  22 2222222     2333456678999999988


Q ss_pred             EEeeCCC---eeeeecccccccccccccCccccccEEEeCCCCceEEeccCCCCEEEEEEcCC-CeEEEEEC---CCcEE
Q 006825          519 SPKHLDN---HLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSM---DKTVR  591 (630)
Q Consensus       519 asgs~Dg---~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL~GHs~~V~sLafSPd-~~LaSgS~---DgtVr  591 (630)
                      +....+.   .|                       .+|++.+.....+......+....|+|| ++|+..+.   ...|.
T Consensus       342 af~~~~~g~~~I-----------------------~v~dl~~g~~~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~  398 (428)
T PRK01029        342 AFCSVIKGVRQI-----------------------CVYDLATGRDYQLTTSPENKESPSWAIDSLHLVYSAGNSNESELY  398 (428)
T ss_pred             EEEEcCCCCcEE-----------------------EEEECCCCCeEEccCCCCCccceEECCCCCEEEEEECCCCCceEE
Confidence            8765432   23                       6778755455555544446788999999 66664332   45788


Q ss_pred             EEeCCCCcEEEEEecC
Q 006825          592 LWHLSSKTCLKIFSHS  607 (630)
Q Consensus       592 IWDl~tg~~l~t~~H~  607 (630)
                      +||+..++........
T Consensus       399 ~vdl~~g~~~~Lt~~~  414 (428)
T PRK01029        399 LISLITKKTRKIVIGS  414 (428)
T ss_pred             EEECCCCCEEEeecCC
Confidence            9999888765554433

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=98.67  E-value=1.2e-05  Score=87.54  Aligned_cols=194  Identities=11%  Similarity=0.011  Sum_probs=123.4

Q ss_pred             eEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCC
Q 006825          351 VEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQER  430 (630)
Q Consensus       351 laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~D  430 (630)
                      +++-..++.+. +.|..+.+.+.++..++ ..--.++|+|||+++.                             ..+.|
T Consensus         9 ~V~~~~~~~v~-viD~~t~~~~~~i~~~~-~~h~~~~~s~Dgr~~y-----------------------------v~~rd   57 (369)
T PF02239_consen    9 YVVERGSGSVA-VIDGATNKVVARIPTGG-APHAGLKFSPDGRYLY-----------------------------VANRD   57 (369)
T ss_dssp             EEEEGGGTEEE-EEETTT-SEEEEEE-ST-TEEEEEE-TT-SSEEE-----------------------------EEETT
T ss_pred             EEEecCCCEEE-EEECCCCeEEEEEcCCC-CceeEEEecCCCCEEE-----------------------------EEcCC
Confidence            45666778888 99999999999988433 3345588999998773                             34567


Q ss_pred             cEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEe-CCCcEEEEECcCCceeeeeeccccc--CcccceE
Q 006825          431 VRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAG-EDCVIHVWQVVESERKGELLEKQED--GHLNMLL  507 (630)
Q Consensus       431 g~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS-~DgtIrVWDl~tg~~~~~l~~~~~~--gh~~~V~  507 (630)
                      +.|.++|+.+.+     .+.+++.-.. -..+++++||++|+++. .++.+.|+|..+.+.++.+......  .....+.
T Consensus        58 g~vsviD~~~~~-----~v~~i~~G~~-~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~  131 (369)
T PF02239_consen   58 GTVSVIDLATGK-----VVATIKVGGN-PRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVA  131 (369)
T ss_dssp             SEEEEEETTSSS-----EEEEEE-SSE-EEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EE
T ss_pred             CeEEEEECCccc-----EEEEEecCCC-cceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCce
Confidence            899999998876     3556655443 57899999999988775 6899999999999988876422211  2345677


Q ss_pred             EEEECCCCCEEEEeeCC-CeeeeecccccccccccccCccccccEEEeC-CCCce-EEeccCCCCEEEEEEcCC-CeEEE
Q 006825          508 LANGSPEPTSLSPKHLD-NHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPI-CSFQGHLDDVLDLSWSKS-QHLLS  583 (630)
Q Consensus       508 svafSpdg~~lasgs~D-g~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l-~tL~GHs~~V~sLafSPd-~~LaS  583 (630)
                      .+..+|....++..-.+ +.|                       .+-+. ..+.+ .+............|.|+ +||+.
T Consensus       132 aIv~s~~~~~fVv~lkd~~~I-----------------------~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~v  188 (369)
T PF02239_consen  132 AIVASPGRPEFVVNLKDTGEI-----------------------WVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLV  188 (369)
T ss_dssp             EEEE-SSSSEEEEEETTTTEE-----------------------EEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEE
T ss_pred             eEEecCCCCEEEEEEccCCeE-----------------------EEEEeccccccceeeecccccccccccCcccceeee
Confidence            77778887755555444 433                       22232 12222 233334456678999999 77655


Q ss_pred             E-ECCCcEEEEeCCCCcEEEEE
Q 006825          584 S-SMDKTVRLWHLSSKTCLKIF  604 (630)
Q Consensus       584 g-S~DgtVrIWDl~tg~~l~t~  604 (630)
                      + -....|-++|+.+++.+..+
T Consensus       189 a~~~sn~i~viD~~~~k~v~~i  210 (369)
T PF02239_consen  189 AANGSNKIAVIDTKTGKLVALI  210 (369)
T ss_dssp             EEGGGTEEEEEETTTTEEEEEE
T ss_pred             cccccceeEEEeeccceEEEEe
Confidence            4 55789999999999887765

...

>PRK01029 tolB translocation protein TolB; Provisional

Probab=98.66  E-value=3.7e-06  Score=93.21  Aligned_cols=205  Identities=13%  Similarity=0.042  Sum_probs=119.6

Q ss_pred             cc--cCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCC
Q 006825          363 NN--GSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSC  440 (630)
Q Consensus       363 vW--D~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~  440 (630)
                      ||  |.. |...+.+. .....+.+-+|||||+.++-                 ..+.+.       .....|++.++.+
T Consensus       167 l~~~d~d-G~~~~~lt-~~~~~~~sP~wSPDG~~~~~-----------------~y~S~~-------~g~~~I~~~~l~~  220 (428)
T PRK01029        167 LWSVDYD-GQNLRPLT-QEHSLSITPTWMHIGSGFPY-----------------LYVSYK-------LGVPKIFLGSLEN  220 (428)
T ss_pred             EEEEcCC-CCCceEcc-cCCCCcccceEccCCCceEE-----------------EEEEcc-------CCCceEEEEECCC
Confidence            55  443 33344455 34455677899999975320                 000000       1123578888877


Q ss_pred             CcccceeeeeEecccCcCEEEEEEccCCCEEEEEeC-----CCcEEEEECcCCc--eeeeeecccccCcccceEEEEECC
Q 006825          441 KDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGE-----DCVIHVWQVVESE--RKGELLEKQEDGHLNMLLLANGSP  513 (630)
Q Consensus       441 ~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~-----DgtIrVWDl~tg~--~~~~l~~~~~~gh~~~V~svafSp  513 (630)
                      ++.      +.+....+.....+|+|||+.||..+.     |..+.+|++..+.  ....+.    .+........+|+|
T Consensus       221 g~~------~~lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt----~~~~~~~~~p~wSP  290 (428)
T PRK01029        221 PAG------KKILALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLL----NEAFGTQGNPSFSP  290 (428)
T ss_pred             CCc------eEeecCCCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEee----cCCCCCcCCeEECC
Confidence            643      223334445567899999998886553     3345567876531  222321    22223345679999


Q ss_pred             CCCEEEEeeC-CCeeeeecccccccccccccCccccccEEEeC--CCCceEEeccCCCCEEEEEEcCC-CeEEEEECC--
Q 006825          514 EPTSLSPKHL-DNHLEKKRRGRSINRKSLSLDHMVVPETVFAL--SDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMD--  587 (630)
Q Consensus       514 dg~~lasgs~-Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl--sgk~l~tL~GHs~~V~sLafSPd-~~LaSgS~D--  587 (630)
                      ||+.|+..+. ++...+                     .++++  .+.....+..+...+....|+|| ++|+..+.+  
T Consensus       291 DG~~Laf~s~~~g~~~l---------------------y~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g  349 (428)
T PRK01029        291 DGTRLVFVSNKDGRPRI---------------------YIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKG  349 (428)
T ss_pred             CCCEEEEEECCCCCceE---------------------EEEECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCC
Confidence            9998887653 443311                     22222  23334555555567788999999 778766553  


Q ss_pred             -CcEEEEeCCCCcEEEEEecCCceEEEE-cCCCcEEEEe
Q 006825          588 -KTVRLWHLSSKTCLKIFSHSDYDISLV-DRLMLRFAYG  624 (630)
Q Consensus       588 -gtVrIWDl~tg~~l~t~~H~~~V~sVa-s~~~~~lAsg  624 (630)
                       ..|.+||+.+++..........+.... ++++..+++.
T Consensus       350 ~~~I~v~dl~~g~~~~Lt~~~~~~~~p~wSpDG~~L~f~  388 (428)
T PRK01029        350 VRQICVYDLATGRDYQLTTSPENKESPSWAIDSLHLVYS  388 (428)
T ss_pred             CcEEEEEECCCCCeEEccCCCCCccceEECCCCCEEEEE
Confidence             469999999987654333333455556 7777776654

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=98.66  E-value=5.8e-08  Score=108.72  Aligned_cols=211  Identities=18%  Similarity=0.216  Sum_probs=140.8

Q ss_pred             eeecCccceeEEEeec----ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcC-CCCeEEeecCCCCCcccc
Q 006825          334 MCVGHSPIVQELMRRQ----NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSV-TGHKERRSSDERDTSSEK  408 (630)
Q Consensus       334 ~l~GHs~~V~~Lafs~----~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSp-dG~~lasgS~D~dt~s~~  408 (630)
                      .+.||+..|+.+-|.|    .||+.+.|..+. .||+.+.....-....|...-..|+|.- ++..+|+           
T Consensus       109 ~lhghsraitd~n~~~q~pdVlatcsvdt~vh-~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlas-----------  176 (1081)
T KOG0309|consen  109 VLHGHSRAITDINFNPQHPDVLATCSVDTYVH-AWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLAS-----------  176 (1081)
T ss_pred             EEecCccceeccccCCCCCcceeeccccccce-eeeccCCCcceeeeecccccCceeeecccCcchhhh-----------
Confidence            5789999999999988    799999999999 9999876543322225555556677765 4443432           


Q ss_pred             CCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEcc-CCCEEEEEeCCCcEEEEECcC
Q 006825          409 GGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSL-DGRYLASAGEDCVIHVWQVVE  487 (630)
Q Consensus       409 gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSp-DG~~LASgS~DgtIrVWDl~t  487 (630)
                                         +....|++||...+..    .+..+++|...|+.++|+. --..+.+.+.|++|+.||...
T Consensus       177 -------------------shg~~i~vwd~r~gs~----pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~k  233 (1081)
T KOG0309|consen  177 -------------------SHGNDIFVWDLRKGST----PLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSK  233 (1081)
T ss_pred             -------------------ccCCceEEEeccCCCc----ceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccc
Confidence                               2334599999876642    5678999999999999987 445688999999999999865


Q ss_pred             CceeeeeecccccCcccceEEEEECCCCC--EEEEeeCCCeeeeecccccccccccccCccccccEEEeC--CCCceEEe
Q 006825          488 SERKGELLEKQEDGHLNMLLLANGSPEPT--SLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL--SDKPICSF  563 (630)
Q Consensus       488 g~~~~~l~~~~~~gh~~~V~svafSpdg~--~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl--sgk~l~tL  563 (630)
                      .....+-    ..-...+|..-.+.|=|.  ++..--.+..+.+....           +.   ...|+.  ..+++++|
T Consensus       234 St~e~~~----~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~-----------n~---d~e~n~~~~~~pVh~F  295 (1081)
T KOG0309|consen  234 STTESKR----TVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCE-----------NS---DLEWNVFDLNTPVHTF  295 (1081)
T ss_pred             cccccce----eccccCcceeccccccCceeEeccccCCeeeeecccc-----------ch---hhhhccccCCcceeee
Confidence            4332221    112224455555555432  22221111112111111           11   134554  34789999


Q ss_pred             ccCCCCEEEEEEcC--------C---CeEEEEECCCcEEEEeCCC
Q 006825          564 QGHLDDVLDLSWSK--------S---QHLLSSSMDKTVRLWHLSS  597 (630)
Q Consensus       564 ~GHs~~V~sLafSP--------d---~~LaSgS~DgtVrIWDl~t  597 (630)
                      .||.+.|....|-.        +   -.|+|=|.|.++|+|-+..
T Consensus       296 ~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~  340 (1081)
T KOG0309|consen  296 VGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDS  340 (1081)
T ss_pred             cCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccH
Confidence            99999998877743        1   3799999999999998764

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.65  E-value=6.8e-07  Score=98.63  Aligned_cols=205  Identities=13%  Similarity=0.094  Sum_probs=145.1

Q ss_pred             ceEeecCCCccEecccCCCCceeEEecC-Ccc-CCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEe
Q 006825          350 NVEEGNKDSFDLNNNGSSGGGMKSKKKG-SWF-KSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHG  427 (630)
Q Consensus       350 ~laSgS~D~tvr~vWD~~tG~~~~~lk~-gH~-~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sg  427 (630)
                      ++|....|+-+| +|+.++++....+.. .|. +.-.+.+|-     |..  ++.  ....--...+....-.+..++-|
T Consensus         7 ~~A~~~~~g~l~-iw~t~~~~~~~e~~p~~~~s~t~~~~~w~-----L~~--~~s--~~k~~~~~~~~~~s~~t~~lvlg   76 (541)
T KOG4547|consen    7 YFALSTGDGRLR-IWDTAKNQLQQEFAPIASLSGTCTYTKWG-----LSA--DYS--PMKWLSLEKAKKASLDTSMLVLG   76 (541)
T ss_pred             eEeecCCCCeEE-EEEccCceeeeeeccchhccCcceeEEEE-----EEe--ccc--hHHHHhHHHHhhccCCceEEEee
Confidence            578888999999 999999988776652 111 122223332     111  010  00000000111112233447888


Q ss_pred             cCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceE
Q 006825          428 QERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLL  507 (630)
Q Consensus       428 s~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~  507 (630)
                      ..-|.|.+|+...+++...   -+-..|.+.|.++.++.+-..|.|++.|+.+.+|+..+...++..     ......+.
T Consensus        77 t~~g~v~~ys~~~g~it~~---~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~-----~~~~~~~~  148 (541)
T KOG4547|consen   77 TPQGSVLLYSVAGGEITAK---LSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIW-----KEQKPLVS  148 (541)
T ss_pred             cCCccEEEEEecCCeEEEE---EecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeee-----ccCCCccc
Confidence            8999999999988875321   122579999999999999999999999999999999988877763     66677889


Q ss_pred             EEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeC-CCCceEEeccCCCCEEEEEEcCC------Ce
Q 006825          508 LANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSWSKS------QH  580 (630)
Q Consensus       508 svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL~GHs~~V~sLafSPd------~~  580 (630)
                      +++.+||+..+++++  +.|                       ++|++ +.+.+.+|.||.++|.+++|--+      .+
T Consensus       149 sl~is~D~~~l~~as--~~i-----------------------k~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~  203 (541)
T KOG4547|consen  149 SLCISPDGKILLTAS--RQI-----------------------KVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKY  203 (541)
T ss_pred             eEEEcCCCCEEEecc--ceE-----------------------EEEEccCceEEEEecCCCcceEEEEEEEeccccccce
Confidence            999999999998875  455                       88998 78899999999999999999653      34


Q ss_pred             EE-EEECCCcEEEEeCCC
Q 006825          581 LL-SSSMDKTVRLWHLSS  597 (630)
Q Consensus       581 La-SgS~DgtVrIWDl~t  597 (630)
                      ++ +...+.-|.+|-+..
T Consensus       204 vLssa~~~r~i~~w~v~~  221 (541)
T KOG4547|consen  204 VLSSAAAERGITVWVVEK  221 (541)
T ss_pred             eeeccccccceeEEEEEc
Confidence            44 555677788887654

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.64  E-value=4.3e-08  Score=106.61  Aligned_cols=214  Identities=15%  Similarity=0.093  Sum_probs=143.8

Q ss_pred             ceeeecCccceeEEEeec---ceEeecCCCccEecccCCC-------CceeEEecCCccCCEEEEEEcCCCCeEEeecCC
Q 006825          332 FEMCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSG-------GGMKSKKKGSWFKSIRTVASSVTGHKERRSSDE  401 (630)
Q Consensus       332 f~~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~t-------G~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D  401 (630)
                      ++.+.||+..|++++--.   ..+++|.|+||+ +|.++.       ..+..+.. .|+++|..+-|-.+-++++     
T Consensus       728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVK-LWSik~EgD~~~tsaCQfTY~-aHkk~i~~igfL~~lr~i~-----  800 (1034)
T KOG4190|consen  728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVK-LWSIKPEGDEIGTSACQFTYQ-AHKKPIHDIGFLADLRSIA-----  800 (1034)
T ss_pred             eecccCcHHHhHHHHhcccccceeeccCCceEE-EEEeccccCccccceeeeEhh-hccCcccceeeeeccceee-----
Confidence            467899999999886544   688999999999 998753       33666777 8999999998888766665     


Q ss_pred             CCCccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEec-ccCcCEEEEEEcc--CCCE-EEEEeCC
Q 006825          402 RDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQ-AHNGSIWSIKFSL--DGRY-LASAGED  477 (630)
Q Consensus       402 ~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~-gHt~~V~sVaFSp--DG~~-LASgS~D  477 (630)
                                                +-|+-|++||.--+.+..    |.+. ...+.+..|..-+  +..+ +|-++..
T Consensus       801 --------------------------ScD~giHlWDPFigr~La----q~~dapk~~a~~~ikcl~nv~~~iliAgcsae  850 (1034)
T KOG4190|consen  801 --------------------------SCDGGIHLWDPFIGRLLA----QMEDAPKEGAGGNIKCLENVDRHILIAGCSAE  850 (1034)
T ss_pred             --------------------------eccCcceeecccccchhH----hhhcCcccCCCceeEecccCcchheeeeccch
Confidence                                      346779999976554321    1111 1223333343333  3333 3444788


Q ss_pred             CcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeCCC
Q 006825          478 CVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSD  557 (630)
Q Consensus       478 gtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsg  557 (630)
                      .|||++|.+.++-..++....-.+....+.+++..+.|..++.+-..|.|.+.+..                      +|
T Consensus       851 STVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR----------------------~G  908 (1034)
T KOG4190|consen  851 STVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDAR----------------------NG  908 (1034)
T ss_pred             hhheeeecccccceeeEEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecC----------------------CC
Confidence            99999999998877776544445666778899999999999999888888433322                      44


Q ss_pred             CceEEeccCCCCEEEEEEcCC-CeEEEEECCCcEEE-EeCCCCcEEEEEe
Q 006825          558 KPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRL-WHLSSKTCLKIFS  605 (630)
Q Consensus       558 k~l~tL~GHs~~V~sLafSPd-~~LaSgS~DgtVrI-WDl~tg~~l~t~~  605 (630)
                      +.+-......-....++- |. +.|+....|.++-+ |..-.|....+.+
T Consensus       909 ~vINswrpmecdllqlaa-psdq~L~~saldHslaVnWhaldgimh~q~k  957 (1034)
T KOG4190|consen  909 KVINSWRPMECDLLQLAA-PSDQALAQSALDHSLAVNWHALDGIMHLQDK  957 (1034)
T ss_pred             ceeccCCcccchhhhhcC-chhHHHHhhcccceeEeeehhcCCeeeeccC
Confidence            444333322222333332 44 77888888888888 8877776555443

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=98.62  E-value=8.6e-08  Score=115.52  Aligned_cols=194  Identities=15%  Similarity=0.151  Sum_probs=143.9

Q ss_pred             CccceeEEEeec---ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceE
Q 006825          338 HSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSS  414 (630)
Q Consensus       338 Hs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~V  414 (630)
                      |-..|..+--.|   +-+||+.|+.++ +|-...+..+..++..-...|..+.|+-.|...                   
T Consensus      2207 ~v~~v~r~~sHp~~~~Yltgs~dgsv~-~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~------------------- 2266 (2439)
T KOG1064|consen 2207 PVENVRRMTSHPSDPYYLTGSQDGSVR-MFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKF------------------- 2266 (2439)
T ss_pred             ccCceeeecCCCCCceEEecCCCceEE-EEeccCCCeEEEeeccCcchhhhhhhcccCCce-------------------
Confidence            334444444444   677999999999 998877776666553222666666666666543                   


Q ss_pred             EEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEe---CCCcEEEEECcCCcee
Q 006825          415 SATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAG---EDCVIHVWQVVESERK  491 (630)
Q Consensus       415 sa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS---~DgtIrVWDl~tg~~~  491 (630)
                                ..+..||.+-+|.+..+      .....+.|........|-.  ..+++++   .++.+.+||..-....
T Consensus      2267 ----------~i~d~dg~l~l~q~~pk------~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~ 2328 (2439)
T KOG1064|consen 2267 ----------GIVDGDGDLSLWQASPK------PYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMN 2328 (2439)
T ss_pred             ----------eeeccCCceeecccCCc------ceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCccc
Confidence                      34456888999988744      2345677999999999965  6788875   6789999997544332


Q ss_pred             eeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeC-CCCceEEeccCCCCE
Q 006825          492 GELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDV  570 (630)
Q Consensus       492 ~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL~GHs~~V  570 (630)
                      .-+    ...|.+.++++++-|...++++|+.+|.|                       ++||+ ..+++++++.     
T Consensus      2329 s~v----~~~H~~gaT~l~~~P~~qllisggr~G~v-----------------------~l~D~rqrql~h~~~~----- 2376 (2439)
T KOG1064|consen 2329 SLV----HTCHDGGATVLAYAPKHQLLISGGRKGEV-----------------------CLFDIRQRQLRHTFQA----- 2376 (2439)
T ss_pred             cee----eeecCCCceEEEEcCcceEEEecCCcCcE-----------------------EEeehHHHHHHHHhhh-----
Confidence            222    37899999999999999999999999999                       78887 4556655553     


Q ss_pred             EEEEEcCCCeEEEEECCCcEEEEeCCCCcEEEEEe
Q 006825          571 LDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFS  605 (630)
Q Consensus       571 ~sLafSPd~~LaSgS~DgtVrIWDl~tg~~l~t~~  605 (630)
                          +....+|++|+..|.|+||++..-..+++|+
T Consensus      2377 ----~~~~~~f~~~ss~g~ikIw~~s~~~ll~~~p 2407 (2439)
T KOG1064|consen 2377 ----LDTREYFVTGSSEGNIKIWRLSEFGLLHTFP 2407 (2439)
T ss_pred             ----hhhhheeeccCcccceEEEEccccchhhcCc
Confidence                4422899999999999999999999999887

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=98.60  E-value=3.5e-06  Score=99.32  Aligned_cols=198  Identities=8%  Similarity=-0.001  Sum_probs=127.4

Q ss_pred             ccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcc
Q 006825          364 NGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDL  443 (630)
Q Consensus       364 WD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el  443 (630)
                      |.. .|..+..+. .|...|..+|.++.-                            ...+++|+.||+||+|+...-+-
T Consensus      1034 W~p-~G~lVAhL~-Ehs~~v~k~a~s~~~----------------------------~s~FvsgS~DGtVKvW~~~k~~~ 1083 (1431)
T KOG1240|consen 1034 WNP-RGILVAHLH-EHSSAVIKLAVSSEH----------------------------TSLFVSGSDDGTVKVWNLRKLEG 1083 (1431)
T ss_pred             CCc-cceEeehhh-hccccccceeecCCC----------------------------CceEEEecCCceEEEeeehhhhc
Confidence            444 466666666 677777666666531                            23467888999999999753221


Q ss_pred             --cceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeee----cccccCcccceEEEEECCC-CC
Q 006825          444 --TALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELL----EKQEDGHLNMLLLANGSPE-PT  516 (630)
Q Consensus       444 --~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~----~~~~~gh~~~V~svafSpd-g~  516 (630)
                        ....+..++.--...+.++.+-+.|..+|.++.||.|++..+..-...+...    ..........|...+|... +.
T Consensus      1084 ~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S 1163 (1431)
T KOG1240|consen 1084 EGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQS 1163 (1431)
T ss_pred             CcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccc
Confidence              2223344555456789999999999999999999999999986521111110    1111111223344444333 22


Q ss_pred             -EEEEeeCCCeeeeecccccccccccccCccccccEEEeC-CCCceEE--eccCCCCEEEEEEcCC-CeEEEEECCCcEE
Q 006825          517 -SLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICS--FQGHLDDVLDLSWSKS-QHLLSSSMDKTVR  591 (630)
Q Consensus       517 -~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~t--L~GHs~~V~sLafSPd-~~LaSgS~DgtVr  591 (630)
                       .++.+..-+.|                       ..|+. ....+.+  +.-..+.|++++.+|- .+++.|..-|.+-
T Consensus      1164 ~~lvy~T~~~~i-----------------------v~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~ 1220 (1431)
T KOG1240|consen 1164 HVLVYATDLSRI-----------------------VSWDTRMRHDAWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLV 1220 (1431)
T ss_pred             eeEEEEEeccce-----------------------EEecchhhhhHHhhhcCccccceeEEEecCCceEEEEecCCceEE
Confidence             45555555555                       44554 2112222  2224478999999998 9999999999999


Q ss_pred             EEeCCCCcEEEEEe--cCCceEEEE
Q 006825          592 LWHLSSKTCLKIFS--HSDYDISLV  614 (630)
Q Consensus       592 IWDl~tg~~l~t~~--H~~~V~sVa  614 (630)
                      +||++-+.++....  +..+++-|.
T Consensus      1221 lWDLRF~~~i~sw~~P~~~~i~~v~ 1245 (1431)
T KOG1240|consen 1221 LWDLRFRVPILSWEHPARAPIRHVW 1245 (1431)
T ss_pred             EEEeecCceeecccCcccCCcceEE
Confidence            99999999988887  556666665

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.59  E-value=2.4e-06  Score=94.46  Aligned_cols=162  Identities=16%  Similarity=0.151  Sum_probs=127.1

Q ss_pred             eEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEE------cc--------------CCCEEEEEeCCCcEEE
Q 006825          423 VSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKF------SL--------------DGRYLASAGEDCVIHV  482 (630)
Q Consensus       423 ~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaF------Sp--------------DG~~LASgS~DgtIrV  482 (630)
                      .++....||.+|+|+...+++...+.  ....-++...+.+|      +|              |-..|+-|-.-|.|.+
T Consensus         7 ~~A~~~~~g~l~iw~t~~~~~~~e~~--p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~~   84 (541)
T KOG4547|consen    7 YFALSTGDGRLRIWDTAKNQLQQEFA--PIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVLL   84 (541)
T ss_pred             eEeecCCCCeEEEEEccCceeeeeec--cchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccEEE
Confidence            36777889999999998776533221  11112233333333      22              2346777888899999


Q ss_pred             EECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeC-CCCceE
Q 006825          483 WQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPIC  561 (630)
Q Consensus       483 WDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~  561 (630)
                      +++..++....+.   ...|.+.|.++.++.+-..|.+++.|..+                       ..|.+ ..+.++
T Consensus        85 ys~~~g~it~~~s---t~~h~~~v~~~~~~~~~~ciyS~~ad~~v-----------------------~~~~~~~~~~~~  138 (541)
T KOG4547|consen   85 YSVAGGEITAKLS---TDKHYGNVNEILDAQRLGCIYSVGADLKV-----------------------VYILEKEKVIIR  138 (541)
T ss_pred             EEecCCeEEEEEe---cCCCCCcceeeecccccCceEecCCceeE-----------------------EEEecccceeee
Confidence            9999998777753   36788999999999888889999999988                       66777 667788


Q ss_pred             EeccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCCCcEEEEEe-cCCceEEEE
Q 006825          562 SFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYDISLV  614 (630)
Q Consensus       562 tL~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg~~l~t~~-H~~~V~sVa  614 (630)
                      .+.+....+.+++.+|| +.|+++|  ++|++||+.+++.+.+|. |.+.|.+++
T Consensus       139 ~~~~~~~~~~sl~is~D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~  191 (541)
T KOG4547|consen  139 IWKEQKPLVSSLCISPDGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLS  191 (541)
T ss_pred             eeccCCCccceEEEcCCCCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEE
Confidence            88888899999999999 9999887  589999999999999999 999999999

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.58  E-value=1.2e-05  Score=83.51  Aligned_cols=162  Identities=12%  Similarity=0.077  Sum_probs=109.4

Q ss_pred             CcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECc-CCceeeeeecccccCcccceEE
Q 006825          430 RVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVV-ESERKGELLEKQEDGHLNMLLL  508 (630)
Q Consensus       430 Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~-tg~~~~~l~~~~~~gh~~~V~s  508 (630)
                      -.+|.|||-.-.     .++.+|. -..+|.+|.+.++-  |+..- ..+|.||... +.+.+..+..   ......+-+
T Consensus        74 pNkviIWDD~k~-----~~i~el~-f~~~I~~V~l~r~r--iVvvl-~~~I~VytF~~n~k~l~~~et---~~NPkGlC~  141 (346)
T KOG2111|consen   74 PNKVIIWDDLKE-----RCIIELS-FNSEIKAVKLRRDR--IVVVL-ENKIYVYTFPDNPKLLHVIET---RSNPKGLCS  141 (346)
T ss_pred             CceEEEEecccC-----cEEEEEE-eccceeeEEEcCCe--EEEEe-cCeEEEEEcCCChhheeeeec---ccCCCceEe
Confidence            358999993211     2455554 56789999997754  44443 5789999997 3444444321   111122222


Q ss_pred             EEECCCCCEEEE-eeCCCeeeeecccccccccccccCccccccEEEeCCC-C--ceEEeccCCCCEEEEEEcCC-CeEEE
Q 006825          509 ANGSPEPTSLSP-KHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSD-K--PICSFQGHLDDVLDLSWSKS-QHLLS  583 (630)
Q Consensus       509 vafSpdg~~las-gs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsg-k--~l~tL~GHs~~V~sLafSPd-~~LaS  583 (630)
                      +.-+..-.+|+. |-.-|.|                       +|-++.. +  +...+..|...|.|++.+.+ .+|||
T Consensus       142 ~~~~~~k~~LafPg~k~Gqv-----------------------Qi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vAT  198 (346)
T KOG2111|consen  142 LCPTSNKSLLAFPGFKTGQV-----------------------QIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVAT  198 (346)
T ss_pred             ecCCCCceEEEcCCCccceE-----------------------EEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEE
Confidence            222223334443 3344555                       4444421 1  34667899999999999999 89999


Q ss_pred             EECCCc-EEEEeCCCCcEEEEEe---cCCceEEEE-cCCCcEEEEecc
Q 006825          584 SSMDKT-VRLWHLSSKTCLKIFS---HSDYDISLV-DRLMLRFAYGAF  626 (630)
Q Consensus       584 gS~Dgt-VrIWDl~tg~~l~t~~---H~~~V~sVa-s~~~~~lAsgs~  626 (630)
                      +|.-|| |||||..+|+.++.+.   ....|.||+ +++..++|.++.
T Consensus       199 aStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSd  246 (346)
T KOG2111|consen  199 ASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSD  246 (346)
T ss_pred             eccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcC
Confidence            999998 5999999999999997   667899999 999999998863

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.56  E-value=1.8e-07  Score=67.50  Aligned_cols=37  Identities=41%  Similarity=0.658  Sum_probs=35.6

Q ss_pred             eeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEE
Q 006825          448 KCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQ  484 (630)
Q Consensus       448 ~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWD  484 (630)
                      +++++++|.+.|++|+|+|++++|+||+.|++|+|||
T Consensus         3 ~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    3 CVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             EEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            5788999999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=98.54  E-value=2.2e-07  Score=99.85  Aligned_cols=154  Identities=16%  Similarity=0.141  Sum_probs=110.7

Q ss_pred             eeeecCccceeEEEeec---ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccccC
Q 006825          333 EMCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKG  409 (630)
Q Consensus       333 ~~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~g  409 (630)
                      +-+.-| ..|..|-|-|   .||+++.-+.++ --|+.+|+.+..+. --.+.+..++-.|-                  
T Consensus       204 HClk~~-~~v~rLeFLPyHfLL~~~~~~G~L~-Y~DVS~GklVa~~~-t~~G~~~vm~qNP~------------------  262 (545)
T KOG1272|consen  204 HCLKRH-IRVARLEFLPYHFLLVAASEAGFLK-YQDVSTGKLVASIR-TGAGRTDVMKQNPY------------------  262 (545)
T ss_pred             eehhhc-CchhhhcccchhheeeecccCCceE-EEeechhhhhHHHH-ccCCccchhhcCCc------------------
Confidence            444433 4578888988   688888888888 77999999887776 33444444444442                  


Q ss_pred             CcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCc
Q 006825          410 GRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESE  489 (630)
Q Consensus       410 h~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~  489 (630)
                                 ..++-.|...|+|-+|....++.     +..+..|.++|.+|++.++|+|+||.|.|..|+|||++...
T Consensus       263 -----------NaVih~GhsnGtVSlWSP~skeP-----LvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~  326 (545)
T KOG1272|consen  263 -----------NAVIHLGHSNGTVSLWSPNSKEP-----LVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFY  326 (545)
T ss_pred             -----------cceEEEcCCCceEEecCCCCcch-----HHHHHhcCCCcceEEECCCCcEEeecccccceeEeeecccc
Confidence                       23356788899999999877763     34456799999999999999999999999999999998877


Q ss_pred             eeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeec
Q 006825          490 RKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKR  531 (630)
Q Consensus       490 ~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~  531 (630)
                      .+..+.    .  ......+++|..|.+  +.+....+.+|.
T Consensus       327 ql~t~~----t--p~~a~~ls~SqkglL--A~~~G~~v~iw~  360 (545)
T KOG1272|consen  327 QLHTYR----T--PHPASNLSLSQKGLL--ALSYGDHVQIWK  360 (545)
T ss_pred             ccceee----c--CCCccccccccccce--eeecCCeeeeeh
Confidence            555531    1  234556777766643  344566675554

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=98.50  E-value=4.9e-06  Score=87.51  Aligned_cols=170  Identities=16%  Similarity=0.169  Sum_probs=113.8

Q ss_pred             EEEecCCcEEEEEeCCCCcccceeeeeEecc-cCcCEEEEEEccC-CCEEEEEeCCCcEEEEECcCCceeee----e---
Q 006825          424 SFHGQERVRVRQYGKSCKDLTALYKCQEIQA-HNGSIWSIKFSLD-GRYLASAGEDCVIHVWQVVESERKGE----L---  494 (630)
Q Consensus       424 l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~g-Ht~~V~sVaFSpD-G~~LASgS~DgtIrVWDl~tg~~~~~----l---  494 (630)
                      ++.+..|-.||+|+++....      ..|+. -...|+||+|-|. +..|+.|..- -|.||..........    .   
T Consensus       113 fava~nddvVriy~ksst~p------t~Lks~sQrnvtclawRPlsaselavgCr~-gIciW~~s~tln~~r~~~~~s~~  185 (445)
T KOG2139|consen  113 FAVATNDDVVRIYDKSSTCP------TKLKSVSQRNVTCLAWRPLSASELAVGCRA-GICIWSDSRTLNANRNIRMMSTH  185 (445)
T ss_pred             hhhhccCcEEEEeccCCCCC------ceecchhhcceeEEEeccCCcceeeeeecc-eeEEEEcCccccccccccccccc
Confidence            56777888999999987543      23332 2456999999994 4567777764 599998743211110    0   


Q ss_pred             --ecccccCcccceEEEEECCCCCEEEEeeCC-CeeeeecccccccccccccCccccccEEEeC-CCCceEEeccCCCCE
Q 006825          495 --LEKQEDGHLNMLLLANGSPEPTSLSPKHLD-NHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDV  570 (630)
Q Consensus       495 --~~~~~~gh~~~V~svafSpdg~~lasgs~D-g~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL~GHs~~V  570 (630)
                        -.....|| ..|.+++|.+||..+++++-+ ..|                       .||++ ++..+.-..---+.+
T Consensus       186 ~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi-----------------------~iWdpdtg~~~pL~~~glgg~  241 (445)
T KOG2139|consen  186 HLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSI-----------------------MIWDPDTGQKIPLIPKGLGGF  241 (445)
T ss_pred             chhheeCCCC-ceeeEEEEcCCCCEEeecccCcceE-----------------------EEEcCCCCCcccccccCCCce
Confidence              01113455 789999999999999998755 455                       78888 444433322344568


Q ss_pred             EEEEEcCC-CeEEEEECCCcEEEEe-CCCCcEEEEEecCCceEEEE-cCCCcEEEEe
Q 006825          571 LDLSWSKS-QHLLSSSMDKTVRLWH-LSSKTCLKIFSHSDYDISLV-DRLMLRFAYG  624 (630)
Q Consensus       571 ~sLafSPd-~~LaSgS~DgtVrIWD-l~tg~~l~t~~H~~~V~sVa-s~~~~~lAsg  624 (630)
                      .-|.|||| .+|..+..|++.++|+ ..+..+.+-.-..++|.... +|.+..|.+.
T Consensus       242 slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~  298 (445)
T KOG2139|consen  242 SLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFA  298 (445)
T ss_pred             eeEEEcCCCCEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEE
Confidence            89999999 9999999999999994 44444444443455776666 6666655544

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.48  E-value=2.9e-07  Score=66.45  Aligned_cols=38  Identities=34%  Similarity=0.706  Sum_probs=36.0

Q ss_pred             CCceEEeccCCCCEEEEEEcCC-CeEEEEECCCcEEEEe
Q 006825          557 DKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWH  594 (630)
Q Consensus       557 gk~l~tL~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWD  594 (630)
                      ++++++|.+|...|++|+|+|+ .+|++++.|++|+|||
T Consensus         1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            3678899999999999999999 9999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.48  E-value=0.00019  Score=87.89  Aligned_cols=154  Identities=10%  Similarity=0.073  Sum_probs=95.6

Q ss_pred             EEEecCCcEEEEEeCCCCccccee---eeeEeccc------CcCEEEEEEccCCC-EEEEEeCCCcEEEEECcCCceeee
Q 006825          424 SFHGQERVRVRQYGKSCKDLTALY---KCQEIQAH------NGSIWSIKFSLDGR-YLASAGEDCVIHVWQVVESERKGE  493 (630)
Q Consensus       424 l~Sgs~Dg~VriWd~~~~el~~~~---~v~tL~gH------t~~V~sVaFSpDG~-~LASgS~DgtIrVWDl~tg~~~~~  493 (630)
                      +++.....+|++|+...+......   ......++      -...+.|+|+|+|+ ++++-+.++.|++||+.++.....
T Consensus       698 yVad~~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~  777 (1057)
T PLN02919        698 YIAMAGQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLL  777 (1057)
T ss_pred             EEEECCCCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEE
Confidence            455566777888887654321000   00001111      12356799999998 555667789999999987653211


Q ss_pred             eecc--------ccc--------CcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeCCC
Q 006825          494 LLEK--------QED--------GHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSD  557 (630)
Q Consensus       494 l~~~--------~~~--------gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsg  557 (630)
                      ....        .+.        ........++++++|.++++...++.|++++                       ..+
T Consensus       778 ~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD-----------------------~~t  834 (1057)
T PLN02919        778 AGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLD-----------------------PAT  834 (1057)
T ss_pred             EecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEE-----------------------CCC
Confidence            0000        000        0111235788999999999988888995444                       422


Q ss_pred             CceEEe--------------ccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCCCcE
Q 006825          558 KPICSF--------------QGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTC  600 (630)
Q Consensus       558 k~l~tL--------------~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg~~  600 (630)
                      ..+.++              .++-.....|+++++ +++++-+.+++|++||+.+++.
T Consensus       835 g~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~  892 (1057)
T PLN02919        835 KRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGEA  892 (1057)
T ss_pred             CeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence            222222              223345688999999 8888889999999999999875

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.43  E-value=1.5e-05  Score=84.51  Aligned_cols=196  Identities=9%  Similarity=0.075  Sum_probs=145.2

Q ss_pred             ccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEcc-CCCEEEEEeCC--CcEEEE
Q 006825          407 EKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSL-DGRYLASAGED--CVIHVW  483 (630)
Q Consensus       407 ~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSp-DG~~LASgS~D--gtIrVW  483 (630)
                      .......|..+.....-+.++-.+|.+.+|..+.+++... .+..+.-| ..+..|.-.+ +..++|+||..  ..++||
T Consensus       101 ~~l~~~~I~gl~~~dg~Litc~~sG~l~~~~~k~~d~hss-~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiw  178 (412)
T KOG3881|consen  101 VSLGTKSIKGLKLADGTLITCVSSGNLQVRHDKSGDLHSS-KLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIW  178 (412)
T ss_pred             cccccccccchhhcCCEEEEEecCCcEEEEeccCCccccc-cceeeecC-CceeeeccCCCCCceEecCchhcccceeee
Confidence            4555666666666666689999999999999886653211 12233333 4566676666 45577779998  889999


Q ss_pred             ECcCCceeeeeeccc--ccC--cccceEEEEECCC--CCEEEEeeCCCeeeeecccccccccccccCccccccEEEeC--
Q 006825          484 QVVESERKGELLEKQ--EDG--HLNMLLLANGSPE--PTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL--  555 (630)
Q Consensus       484 Dl~tg~~~~~l~~~~--~~g--h~~~V~svafSpd--g~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl--  555 (630)
                      |+++.+.+..-...+  .-+  ..-++..+.|-+.  ...++++..-+.+                       ++|+.  
T Consensus       179 dle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqv-----------------------R~YDt~~  235 (412)
T KOG3881|consen  179 DLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQV-----------------------RLYDTRH  235 (412)
T ss_pred             ecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeE-----------------------EEecCcc
Confidence            998875543321000  001  1234557888887  8889999888888                       66666  


Q ss_pred             CCCceEEeccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCCCcEEEE-Ee-cCCceEEEE-cCCCcEEEEecce
Q 006825          556 SDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKI-FS-HSDYDISLV-DRLMLRFAYGAFL  627 (630)
Q Consensus       556 sgk~l~tL~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg~~l~t-~~-H~~~V~sVa-s~~~~~lAsgs~~  627 (630)
                      ..+|+..|.--...|+++...|+ +++++|-.-+.+..+|++.++.+.. |+ -.+.|++|. +|...++|+.+.+
T Consensus       236 qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLD  311 (412)
T KOG3881|consen  236 QRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLD  311 (412)
T ss_pred             cCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccc
Confidence            45788888877889999999999 9999999999999999999998877 66 889999999 8888888888755

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=98.43  E-value=0.0012  Score=71.15  Aligned_cols=271  Identities=15%  Similarity=0.062  Sum_probs=143.8

Q ss_pred             ccccccEEEEECCCCcEEEEeeec-CCCc-eeEEEEcCCCceEeeecceeeecCccceeEEEeec---ceEeec-CCCcc
Q 006825          287 GVAEQGCLIKNLDNGKEFVVNEIQ-EDGT-WKKVKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQ---NVEEGN-KDSFD  360 (630)
Q Consensus       287 ~~~~~~~~I~~LddG~~~~v~e~~-~dg~-~~~l~dv~TG~~lt~eef~~l~GHs~~V~~Lafs~---~laSgS-~D~tv  360 (630)
                      ...+..+...+.+....|++.+.. ..|. ....++..+|+..-+.++.. .|..  -..|++.|   .|+.+. .++++
T Consensus        35 ~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~-~g~~--p~~i~~~~~g~~l~vany~~g~v  111 (345)
T PF10282_consen   35 EGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPS-GGSS--PCHIAVDPDGRFLYVANYGGGSV  111 (345)
T ss_dssp             ESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEE-SSSC--EEEEEECTTSSEEEEEETTTTEE
T ss_pred             CCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeecc-CCCC--cEEEEEecCCCEEEEEEccCCeE
Confidence            345556666666666666666653 3333 22233333344442232221 2332  23566766   444444 47777


Q ss_pred             EecccCCC-CceeEE---ecC---------CccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEe
Q 006825          361 LNNNGSSG-GGMKSK---KKG---------SWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHG  427 (630)
Q Consensus       361 r~vWD~~t-G~~~~~---lk~---------gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sg  427 (630)
                      . ++++.. |.....   ++.         .-....-++.|+|+|+++..                            .-
T Consensus       112 ~-v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v----------------------------~d  162 (345)
T PF10282_consen  112 S-VFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYV----------------------------PD  162 (345)
T ss_dssp             E-EEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEE----------------------------EE
T ss_pred             E-EEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEE----------------------------Ee
Confidence            7 888866 443332   110         11233446777777776542                            22


Q ss_pred             cCCcEEEEEeCCCCcccceeeeeEeccc-CcCEEEEEEccCCCEEEEE-eCCCcEEEEECc--CCce--eeeeecccc-c
Q 006825          428 QERVRVRQYGKSCKDLTALYKCQEIQAH-NGSIWSIKFSLDGRYLASA-GEDCVIHVWQVV--ESER--KGELLEKQE-D  500 (630)
Q Consensus       428 s~Dg~VriWd~~~~el~~~~~v~tL~gH-t~~V~sVaFSpDG~~LASg-S~DgtIrVWDl~--tg~~--~~~l~~~~~-~  500 (630)
                      -..-+|++|++...... +.....+.-. ...-..|+|+|+|+++... -.+++|.++++.  ++..  +..+..... .
T Consensus       163 lG~D~v~~~~~~~~~~~-l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~  241 (345)
T PF10282_consen  163 LGADRVYVYDIDDDTGK-LTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGF  241 (345)
T ss_dssp             TTTTEEEEEEE-TTS-T-EEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTS
T ss_pred             cCCCEEEEEEEeCCCce-EEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccc
Confidence            23346888877654311 1122333322 3346889999999987665 467889999998  3322  111111111 1


Q ss_pred             CcccceEEEEECCCCCEEEEeeCC-CeeeeecccccccccccccCccccccEEEeCC---CC--ceEEeccCCCCEEEEE
Q 006825          501 GHLNMLLLANGSPEPTSLSPKHLD-NHLEKKRRGRSINRKSLSLDHMVVPETVFALS---DK--PICSFQGHLDDVLDLS  574 (630)
Q Consensus       501 gh~~~V~svafSpdg~~lasgs~D-g~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdls---gk--~l~tL~GHs~~V~sLa  574 (630)
                      ........++++|||++|.++... ..|                       .+|++.   |+  .+..+......-..++
T Consensus       242 ~~~~~~~~i~ispdg~~lyvsnr~~~sI-----------------------~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~  298 (345)
T PF10282_consen  242 TGENAPAEIAISPDGRFLYVSNRGSNSI-----------------------SVFDLDPATGTLTLVQTVPTGGKFPRHFA  298 (345)
T ss_dssp             CSSSSEEEEEE-TTSSEEEEEECTTTEE-----------------------EEEEECTTTTTEEEEEEEEESSSSEEEEE
T ss_pred             cccCCceeEEEecCCCEEEEEeccCCEE-----------------------EEEEEecCCCceEEEEEEeCCCCCccEEE
Confidence            111257789999999988776543 455                       556551   22  2223333334478999


Q ss_pred             EcCC-CeEEEEE-CCCcEEEEeC--CCCcEEEEEe--cCCceEEE
Q 006825          575 WSKS-QHLLSSS-MDKTVRLWHL--SSKTCLKIFS--HSDYDISL  613 (630)
Q Consensus       575 fSPd-~~LaSgS-~DgtVrIWDl--~tg~~l~t~~--H~~~V~sV  613 (630)
                      |+|+ ++|+.+. .+++|.+|++  .+|.+...-.  .-....||
T Consensus       299 ~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~~~~~~~~p~ci  343 (345)
T PF10282_consen  299 FSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPVGSSVPIPSPVCI  343 (345)
T ss_dssp             E-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEEESSSEEEE
T ss_pred             EeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEecccccCCCCEEE
Confidence            9999 8777666 5789999866  5777655443  33444454

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.42  E-value=6.8e-07  Score=97.49  Aligned_cols=173  Identities=13%  Similarity=0.164  Sum_probs=122.7

Q ss_pred             ccCCcceEEEeec--CCCeEEEecCCcEEEEEeCCCC--cccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEE
Q 006825          407 EKGGRRSSSATDD--SQDVSFHGQERVRVRQYGKSCK--DLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHV  482 (630)
Q Consensus       407 ~~gh~~~Vsa~~~--s~d~l~Sgs~Dg~VriWd~~~~--el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrV  482 (630)
                      ..||+..|.++.-  ....+++++.|.+|++|.++..  +.....|.-++++|+.+|..+.|-.+-++++++  |+.|++
T Consensus       731 f~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~giHl  808 (1034)
T KOG4190|consen  731 FTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGGIHL  808 (1034)
T ss_pred             ccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCccee
Confidence            7788887766542  2334899999999999987642  233334778899999999999999999988865  899999


Q ss_pred             EECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeC-CCCceE
Q 006825          483 WQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPIC  561 (630)
Q Consensus       483 WDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~  561 (630)
                      ||---+..+.++...+..+..+.|.++.--....+++.++...++                       ++++. .++-++
T Consensus       809 WDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTV-----------------------Kl~DaRsce~~~  865 (1034)
T KOG4190|consen  809 WDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTV-----------------------KLFDARSCEWTC  865 (1034)
T ss_pred             ecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhh-----------------------eeeeccccccee
Confidence            998877777655444334444445544322223334444666677                       44444 333333


Q ss_pred             Ee-----ccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCCCcEEEEE
Q 006825          562 SF-----QGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIF  604 (630)
Q Consensus       562 tL-----~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg~~l~t~  604 (630)
                      .+     .+....+.+++..+. ++++.+=..|+|-+.|.++|+.+..+
T Consensus       866 E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINsw  914 (1034)
T KOG4190|consen  866 ELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSW  914 (1034)
T ss_pred             eEEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccC
Confidence            32     456677899999998 99999999999999999999977743

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=98.36  E-value=0.00076  Score=72.90  Aligned_cols=265  Identities=11%  Similarity=0.016  Sum_probs=138.0

Q ss_pred             eEEEEcCCCceEeeecceee-ecCccceeEEEeec----ceEeec---------CCCccEecccCCCCceeEEecCCcc-
Q 006825          316 KKVKEVGTGRQLTIEEFEMC-VGHSPIVQELMRRQ----NVEEGN---------KDSFDLNNNGSSGGGMKSKKKGSWF-  380 (630)
Q Consensus       316 ~~l~dv~TG~~lt~eef~~l-~GHs~~V~~Lafs~----~laSgS---------~D~tvr~vWD~~tG~~~~~lk~gH~-  380 (630)
                      ..+-|..+++.+     .++ .|..+..  + ++|    ..++.+         .+..|. +||.+|++.+.++..+-. 
T Consensus        29 v~ViD~~~~~v~-----g~i~~G~~P~~--~-~spDg~~lyva~~~~~R~~~G~~~d~V~-v~D~~t~~~~~~i~~p~~p   99 (352)
T TIGR02658        29 VYTIDGEAGRVL-----GMTDGGFLPNP--V-VASDGSFFAHASTVYSRIARGKRTDYVE-VIDPQTHLPIADIELPEGP   99 (352)
T ss_pred             EEEEECCCCEEE-----EEEEccCCCce--e-ECCCCCEEEEEeccccccccCCCCCEEE-EEECccCcEEeEEccCCCc
Confidence            456677777766     222 2333333  2 555    233333         677888 999999999988874311 


Q ss_pred             -----CCEEEEEEcCCCCeEEeecCCC-CCcc--ccCCcceEEEeecCCCe--EEEe--------cCCcEEEEEeCCCCc
Q 006825          381 -----KSIRTVASSVTGHKERRSSDER-DTSS--EKGGRRSSSATDDSQDV--SFHG--------QERVRVRQYGKSCKD  442 (630)
Q Consensus       381 -----~~V~sVAfSpdG~~lasgS~D~-dt~s--~~gh~~~Vsa~~~s~d~--l~Sg--------s~Dg~VriWd~~~~e  442 (630)
                           ..-..++++|||+++.....+. ..-.  -......+.-++. +++  ++..        +.|++..........
T Consensus       100 ~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~v-p~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g  178 (352)
T TIGR02658       100 RFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDV-PDCYHIFPTANDTFFMHCRDGSLAKVGYGTKG  178 (352)
T ss_pred             hhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeC-CCCcEEEEecCCccEEEeecCceEEEEecCCC
Confidence                 1223689999999887665442 1100  1111111111111 222  2222        233333332221110


Q ss_pred             ccceeeeeEecccCcCEEEE-EEcc-CCCEEEEEeCCCcEEEEECcCCcee-----eeeecccc-cC-cccceEEEEECC
Q 006825          443 LTALYKCQEIQAHNGSIWSI-KFSL-DGRYLASAGEDCVIHVWQVVESERK-----GELLEKQE-DG-HLNMLLLANGSP  513 (630)
Q Consensus       443 l~~~~~v~tL~gHt~~V~sV-aFSp-DG~~LASgS~DgtIrVWDl~tg~~~-----~~l~~~~~-~g-h~~~V~svafSp  513 (630)
                      .........+.+-..+|..= .|.+ +|+++....+ |+|.+-|+......     ..+..... .+ ....+.-++++|
T Consensus       179 ~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~  257 (352)
T TIGR02658       179 NPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHR  257 (352)
T ss_pred             ceEEeeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcC
Confidence            00000111111111111110 4556 8988887776 99999996443221     11100000 01 122333489999


Q ss_pred             CCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeC-CCCceEEeccCCCCEEEEEEcCC-C-eEEEEE-CCCc
Q 006825          514 EPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSWSKS-Q-HLLSSS-MDKT  589 (630)
Q Consensus       514 dg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL~GHs~~V~sLafSPd-~-~LaSgS-~Dgt  589 (630)
                      +++.+......+.-  |...        ...+.+   .+++. +++.+..+.- ...+..|+|+|| + +|+... .++.
T Consensus       258 dg~~lyV~~~~~~~--~thk--------~~~~~V---~ViD~~t~kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~  323 (352)
T TIGR02658       258 ARDRIYLLADQRAK--WTHK--------TASRFL---FVVDAKTGKRLRKIEL-GHEIDSINVSQDAKPLLYALSTGDKT  323 (352)
T ss_pred             CCCEEEEEecCCcc--cccc--------CCCCEE---EEEECCCCeEEEEEeC-CCceeeEEECCCCCeEEEEeCCCCCc
Confidence            98887774322110  0000        000111   55566 6777777652 347899999999 6 666555 6899


Q ss_pred             EEEEeCCCCcEEEEEe
Q 006825          590 VRLWHLSSKTCLKIFS  605 (630)
Q Consensus       590 VrIWDl~tg~~l~t~~  605 (630)
                      |.+.|+.+++.++++.
T Consensus       324 VsViD~~t~k~i~~i~  339 (352)
T TIGR02658       324 LYIFDAETGKELSSVN  339 (352)
T ss_pred             EEEEECcCCeEEeeec
Confidence            9999999999999884

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.34  E-value=1.7e-05  Score=83.17  Aligned_cols=166  Identities=14%  Similarity=0.212  Sum_probs=116.8

Q ss_pred             ccCCcceEEEeecCCCe-EEEecCCcEEEEEeCCCCcccceeeeeEeccc-----CcCEEEEEEcc-CCCEEEEEeCCCc
Q 006825          407 EKGGRRSSSATDDSQDV-SFHGQERVRVRQYGKSCKDLTALYKCQEIQAH-----NGSIWSIKFSL-DGRYLASAGEDCV  479 (630)
Q Consensus       407 ~~gh~~~Vsa~~~s~d~-l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gH-----t~~V~sVaFSp-DG~~LASgS~Dgt  479 (630)
                      ...|..-|.++.+..|. .+-...|-+|-+|.+.-.+  .-+.+-.++.|     +..|++..|+| ..++|+-.+.-|+
T Consensus       160 aNaHtyhiNSIS~NsD~Et~lSADdLRINLWnlei~d--~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGt  237 (433)
T KOG1354|consen  160 ANAHTYHINSISVNSDKETFLSADDLRINLWNLEIID--QSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGT  237 (433)
T ss_pred             cccceeEeeeeeecCccceEeeccceeeeeccccccC--CceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCc
Confidence            45688889999999998 7777889999999885432  22344445554     46799999999 5667777888999


Q ss_pred             EEEEECcCCcee---eeeeccc--------ccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCcccc
Q 006825          480 IHVWQVVESERK---GELLEKQ--------EDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVV  548 (630)
Q Consensus       480 IrVWDl~tg~~~---~~l~~~~--------~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~  548 (630)
                      |||-|++.....   ..++..+        +.+-...|..+.|++.|+++++- .--+|                     
T Consensus       238 IrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsR-Dyltv---------------------  295 (433)
T KOG1354|consen  238 IRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSR-DYLTV---------------------  295 (433)
T ss_pred             EEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEe-cccee---------------------
Confidence            999999743211   1111000        12223457789999999999875 22456                     


Q ss_pred             ccEEEeC--CCCceEEeccCCC------------CE---EEEEEcCC-CeEEEEECCCcEEEEeCCCC
Q 006825          549 PETVFAL--SDKPICSFQGHLD------------DV---LDLSWSKS-QHLLSSSMDKTVRLWHLSSK  598 (630)
Q Consensus       549 ~~~Vwdl--sgk~l~tL~GHs~------------~V---~sLafSPd-~~LaSgS~DgtVrIWDl~tg  598 (630)
                        ++|++  ..+++.++.-|..            .|   .-++|+.+ .+++|||....++++++..|
T Consensus       296 --k~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~g  361 (433)
T KOG1354|consen  296 --KLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARG  361 (433)
T ss_pred             --EEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcceEecccccceEEEecCCCC
Confidence              66776  4566666665532            22   35789988 99999999999999996654

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.27  E-value=1.2e-05  Score=84.21  Aligned_cols=240  Identities=15%  Similarity=0.125  Sum_probs=147.2

Q ss_pred             ccCCEEEEEEcCCCCeEEeecCCC------CCcc----------ccCCc------------ceEEEeecCCCe----EEE
Q 006825          379 WFKSIRTVASSVTGHKERRSSDER------DTSS----------EKGGR------------RSSSATDDSQDV----SFH  426 (630)
Q Consensus       379 H~~~V~sVAfSpdG~~lasgS~D~------dt~s----------~~gh~------------~~Vsa~~~s~d~----l~S  426 (630)
                      -..-|.+|-|...|.+|++|..++      ++..          +..|.            -.|..+...+++    +..
T Consensus        24 eadiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLl  103 (433)
T KOG1354|consen   24 EADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLL  103 (433)
T ss_pred             hhcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEE
Confidence            345678899999999999998776      1110          11110            112233333332    566


Q ss_pred             ecCCcEEEEEeCCCCcccc------------------e------------eeeeEe-cccCcCEEEEEEccCCCEEEEEe
Q 006825          427 GQERVRVRQYGKSCKDLTA------------------L------------YKCQEI-QAHNGSIWSIKFSLDGRYLASAG  475 (630)
Q Consensus       427 gs~Dg~VriWd~~~~el~~------------------~------------~~v~tL-~gHt~~V~sVaFSpDG~~LASgS  475 (630)
                      ...|.+|++|.+..+....                  +            .+.+.+ .+|+-.|++|.++.|+..++|+ 
T Consensus       104 stNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSA-  182 (433)
T KOG1354|consen  104 STNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSA-  182 (433)
T ss_pred             ecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeec-
Confidence            7789999999876543222                  0            111222 4699999999999999999985 


Q ss_pred             CCCcEEEEECcCCceeeeee-ccc--ccCcccceEEEEECCC-CCEEEEeeCCCeeeeecccccccccccccCccccccE
Q 006825          476 EDCVIHVWQVVESERKGELL-EKQ--EDGHLNMLLLANGSPE-PTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPET  551 (630)
Q Consensus       476 ~DgtIrVWDl~tg~~~~~l~-~~~--~~gh~~~V~svafSpd-g~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~  551 (630)
                      .|-.|-+|+++-......+. .++  ...-...|++..|+|. ...++..+..|+|++.+......     .+..   .+
T Consensus       183 DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aL-----Cd~h---sK  254 (433)
T KOG1354|consen  183 DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSAL-----CDAH---SK  254 (433)
T ss_pred             cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhh-----hcch---hh
Confidence            57889999986443332222 111  1122346788899997 67888888999997666442100     0000   02


Q ss_pred             EEeCCCC--ceEEeccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeC-CCCcEEEEEe-cC------------Cce----
Q 006825          552 VFALSDK--PICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHL-SSKTCLKIFS-HS------------DYD----  610 (630)
Q Consensus       552 Vwdlsgk--~l~tL~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl-~tg~~l~t~~-H~------------~~V----  610 (630)
                      +|.....  ...-|.+--..|.++.|+++ .|+++=. =-+|+|||+ ...+++.+++ |.            +.|    
T Consensus       255 lfEepedp~~rsffseiIsSISDvKFs~sGryilsRD-yltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKF  333 (433)
T KOG1354|consen  255 LFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRD-YLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKF  333 (433)
T ss_pred             hhccccCCcchhhHHHHhhhhhceEEccCCcEEEEec-cceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhhee
Confidence            3332111  11113334456899999999 7777643 269999999 5677788877 52            223    


Q ss_pred             EEEEcCCCcEEEEeccee
Q 006825          611 ISLVDRLMLRFAYGAFLN  628 (630)
Q Consensus       611 ~sVas~~~~~lAsgs~~n  628 (630)
                      .|..+.++..+.+|++-|
T Consensus       334 ec~~sg~~~~v~TGsy~n  351 (433)
T KOG1354|consen  334 ECSWSGNDSYVMTGSYNN  351 (433)
T ss_pred             EEEEcCCcceEecccccc
Confidence            233377788888888755

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=98.27  E-value=3e-06  Score=102.80  Aligned_cols=148  Identities=13%  Similarity=0.128  Sum_probs=108.2

Q ss_pred             eEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccCc
Q 006825          423 VSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGH  502 (630)
Q Consensus       423 ~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh  502 (630)
                      +.++|+.||.|++|....++.  ..+-++ -|. ..|+.+.|+.+|+.+..+-.||.+.+|.+.. +....     ...|
T Consensus      2222 ~Yltgs~dgsv~~~~w~~~~~--v~~~rt-~g~-s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~p-k~~~s-----~qch 2291 (2439)
T KOG1064|consen 2222 YYLTGSQDGSVRMFEWGHGQQ--VVCFRT-AGN-SRVTRSRFNHQGNKFGIVDGDGDLSLWQASP-KPYTS-----WQCH 2291 (2439)
T ss_pred             eEEecCCCceEEEEeccCCCe--EEEeec-cCc-chhhhhhhcccCCceeeeccCCceeecccCC-cceec-----cccC
Confidence            368999999999998876642  222222 233 8899999999999999999999999999872 11111     3567


Q ss_pred             ccceEEEEECCCCCEEEEee---CCCeeeeecccccccccccccCccccccEEEeC--CCCceEEeccCCCCEEEEEEcC
Q 006825          503 LNMLLLANGSPEPTSLSPKH---LDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL--SDKPICSFQGHLDDVLDLSWSK  577 (630)
Q Consensus       503 ~~~V~svafSpdg~~lasgs---~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl--sgk~l~tL~GHs~~V~sLafSP  577 (630)
                      ......+.|-.  ..+++++   .++.+                       .+||.  .+..-..-..|.+.++++++.|
T Consensus      2292 nk~~~Df~Fi~--s~~~tag~s~d~~n~-----------------------~lwDtl~~~~~s~v~~~H~~gaT~l~~~P 2346 (2439)
T KOG1064|consen 2292 NKALSDFRFIG--SLLATAGRSSDNRNV-----------------------CLWDTLLPPMNSLVHTCHDGGATVLAYAP 2346 (2439)
T ss_pred             Cccccceeeee--hhhhccccCCCCCcc-----------------------cchhcccCcccceeeeecCCCceEEEEcC
Confidence            66666666654  4555543   34455                       55554  2222122278999999999999


Q ss_pred             C-CeEEEEECCCcEEEEeCCCCcEEEEEe
Q 006825          578 S-QHLLSSSMDKTVRLWHLSSKTCLKIFS  605 (630)
Q Consensus       578 d-~~LaSgS~DgtVrIWDl~tg~~l~t~~  605 (630)
                      . ++|+||+.+|.|+|||++..+++++|+
T Consensus      2347 ~~qllisggr~G~v~l~D~rqrql~h~~~ 2375 (2439)
T KOG1064|consen 2347 KHQLLISGGRKGEVCLFDIRQRQLRHTFQ 2375 (2439)
T ss_pred             cceEEEecCCcCcEEEeehHHHHHHHHhh
Confidence            9 999999999999999999888877775

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=98.25  E-value=4.5e-05  Score=78.57  Aligned_cols=154  Identities=19%  Similarity=0.284  Sum_probs=109.7

Q ss_pred             EEeecCCCe--EEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEcc-CCCEEEEEeCCCcEEEEECcCCcee
Q 006825          415 SATDDSQDV--SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSL-DGRYLASAGEDCVIHVWQVVESERK  491 (630)
Q Consensus       415 sa~~~s~d~--l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSp-DG~~LASgS~DgtIrVWDl~tg~~~  491 (630)
                      .+++++..+  ++++-.+|.+.+-+...   ..+..+|++++|.-.+|...|+. +.+++.|||.|+.+..||++-..  
T Consensus       125 lslD~~~~~~~i~vs~s~G~~~~v~~t~---~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~--  199 (339)
T KOG0280|consen  125 LSLDISTSGTKIFVSDSRGSISGVYETE---MVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPK--  199 (339)
T ss_pred             eEEEeeccCceEEEEcCCCcEEEEecce---eeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCc--
Confidence            344444433  78888888887443322   23446789999999999999987 66799999999999999998322  


Q ss_pred             eeeecccccCcccceEEEEECC-CCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeC--CCCceEEeccCCC
Q 006825          492 GELLEKQEDGHLNMLLLANGSP-EPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL--SDKPICSFQGHLD  568 (630)
Q Consensus       492 ~~l~~~~~~gh~~~V~svafSp-dg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl--sgk~l~tL~GHs~  568 (630)
                       +++.....-|...|.++.-+| .+.+|++|+.|..|                       ++|+.  -++++..-. -.+
T Consensus       200 -~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i-----------------------~~~DtRnm~kPl~~~~-v~G  254 (339)
T KOG0280|consen  200 -TFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECI-----------------------RVLDTRNMGKPLFKAK-VGG  254 (339)
T ss_pred             -ceeeecceeeecceEEEecCCCCCceEEEeccccce-----------------------eeeehhcccCccccCc-ccc
Confidence             222222356777888887776 48899999999999                       55555  245544322 237


Q ss_pred             CEEEEEEcCC--CeEEEEECCCcEEEEeCCCC
Q 006825          569 DVLDLSWSKS--QHLLSSSMDKTVRLWHLSSK  598 (630)
Q Consensus       569 ~V~sLafSPd--~~LaSgS~DgtVrIWDl~tg  598 (630)
                      .|+.+.++|.  ..|+.+++-.-.+|-++..+
T Consensus       255 GVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~  286 (339)
T KOG0280|consen  255 GVWRIKHHPEIFHRLLAACMHNGAKILDSSDK  286 (339)
T ss_pred             ceEEEEecchhhhHHHHHHHhcCceEEEeccc
Confidence            7899999996  56677777777888887764

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=98.18  E-value=0.00074  Score=74.84  Aligned_cols=234  Identities=12%  Similarity=0.066  Sum_probs=139.5

Q ss_pred             CccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCC---------CCccccCCcceEEEeecCCCe-----
Q 006825          358 SFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDER---------DTSSEKGGRRSSSATDDSQDV-----  423 (630)
Q Consensus       358 ~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~---------dt~s~~gh~~~Vsa~~~s~d~-----  423 (630)
                      ..++ +|+++++.....+....... .+..|+.|..+.+.-....         .+...+=|...++...+++..     
T Consensus       105 pn~~-v~~vet~~~~s~~q~k~Q~~-W~~qfs~dEsl~arlv~nev~f~~~~~f~~~~~kl~~~~i~~f~lSpgp~~~~v  182 (566)
T KOG2315|consen  105 PNVL-VYNVETGVQRSQIQKKMQNG-WVPQFSIDESLAARLVSNEVQFYDLGSFKTIQHKLSVSGITMLSLSPGPEPPFV  182 (566)
T ss_pred             Ccee-eeeeccceehhheehhhhcC-cccccccchhhhhhhhcceEEEEecCCccceeeeeeccceeeEEecCCCCCceE
Confidence            3456 89999865544333212221 3577888765433321111         112233344555666666552     


Q ss_pred             -EE---EecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCC---EEEEEeCCC---------cEEEEECcC
Q 006825          424 -SF---HGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGR---YLASAGEDC---------VIHVWQVVE  487 (630)
Q Consensus       424 -l~---Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~---~LASgS~Dg---------tIrVWDl~t  487 (630)
                       ++   .++.-..||+|.............++|-  ...=..+.|++-|+   +|++.--|+         ++++.++..
T Consensus       183 AvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFF--kadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g  260 (566)
T KOG2315|consen  183 AVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFF--KADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQG  260 (566)
T ss_pred             EEEccCCCCCCcEEEEeccccccccchhhhcccc--ccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecC
Confidence             22   2345567999976522211111112221  11123577887665   344444444         688888873


Q ss_pred             CceeeeeecccccCcccceEEEEECCCCCEEEEe--eCCCeeeeecccccccccccccCccccccEEEeCCCCceEEecc
Q 006825          488 SERKGELLEKQEDGHLNMLLLANGSPEPTSLSPK--HLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQG  565 (630)
Q Consensus       488 g~~~~~l~~~~~~gh~~~V~svafSpdg~~lasg--s~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL~G  565 (630)
                      ..+.-.      -...++|.++.|+|+++-++..  -.-..+                       .||++.+.++..|. 
T Consensus       261 ~s~~V~------L~k~GPVhdv~W~~s~~EF~VvyGfMPAkv-----------------------tifnlr~~~v~df~-  310 (566)
T KOG2315|consen  261 ESVSVP------LLKEGPVHDVTWSPSGREFAVVYGFMPAKV-----------------------TIFNLRGKPVFDFP-  310 (566)
T ss_pred             ceEEEe------cCCCCCceEEEECCCCCEEEEEEecccceE-----------------------EEEcCCCCEeEeCC-
Confidence            333333      2345899999999999877664  222333                       78999999988874 


Q ss_pred             CCCCEEEEEEcCC-CeEEEEECC---CcEEEEeCCCCcEEEEEecCCceEEEEcCCCcEEEEecc
Q 006825          566 HLDDVLDLSWSKS-QHLLSSSMD---KTVRLWHLSSKTCLKIFSHSDYDISLVDRLMLRFAYGAF  626 (630)
Q Consensus       566 Hs~~V~sLafSPd-~~LaSgS~D---gtVrIWDl~tg~~l~t~~H~~~V~sVas~~~~~lAsgs~  626 (630)
                       .++=+++-|+|. ++|+-++.+   |.|-|||+.+.+++..+.-.+...+-=+|++.+|.++..
T Consensus       311 -egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~tt~~eW~PdGe~flTATT  374 (566)
T KOG2315|consen  311 -EGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAANTTVFEWSPDGEYFLTATT  374 (566)
T ss_pred             -CCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccCCceEEEEcCCCcEEEEEec
Confidence             345578999999 888777764   799999999999999887444433322888888887753

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.14  E-value=0.0057  Score=62.16  Aligned_cols=227  Identities=11%  Similarity=0.038  Sum_probs=131.9

Q ss_pred             EEEEECCCCcEEEEeeecCCCceeEEEEcCCCceEeeecceeeecCccceeEEEee-c--ceEeecCCCccEecccCCCC
Q 006825          293 CLIKNLDNGKEFVVNEIQEDGTWKKVKEVGTGRQLTIEEFEMCVGHSPIVQELMRR-Q--NVEEGNKDSFDLNNNGSSGG  369 (630)
Q Consensus       293 ~~I~~LddG~~~~v~e~~~dg~~~~l~dv~TG~~lt~eef~~l~GHs~~V~~Lafs-~--~laSgS~D~tvr~vWD~~tG  369 (630)
                      .-+|+-++|..|.+.-.+   ....-++..+++...++    +.+    ...+++. +  .+..+...+. . +.|..+|
T Consensus         4 gp~~d~~~g~l~~~D~~~---~~i~~~~~~~~~~~~~~----~~~----~~G~~~~~~~g~l~v~~~~~~-~-~~d~~~g   70 (246)
T PF08450_consen    4 GPVWDPRDGRLYWVDIPG---GRIYRVDPDTGEVEVID----LPG----PNGMAFDRPDGRLYVADSGGI-A-VVDPDTG   70 (246)
T ss_dssp             EEEEETTTTEEEEEETTT---TEEEEEETTTTEEEEEE----SSS----EEEEEEECTTSEEEEEETTCE-E-EEETTTT
T ss_pred             ceEEECCCCEEEEEEcCC---CEEEEEECCCCeEEEEe----cCC----CceEEEEccCCEEEEEEcCce-E-EEecCCC
Confidence            445666677666665432   12334555565554211    111    4455555 3  4444444444 4 5588888


Q ss_pred             ceeEEecC---C-ccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccc
Q 006825          370 GMKSKKKG---S-WFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTA  445 (630)
Q Consensus       370 ~~~~~lk~---g-H~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~  445 (630)
                      +.......   . .....+.+++.++|.+.++.........                     ...+.|..++.. ++   
T Consensus        71 ~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~---------------------~~~g~v~~~~~~-~~---  125 (246)
T PF08450_consen   71 KVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASG---------------------IDPGSVYRIDPD-GK---  125 (246)
T ss_dssp             EEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTC---------------------GGSEEEEEEETT-SE---
T ss_pred             cEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCcccc---------------------ccccceEEECCC-Ce---
Confidence            65444431   2 5567789999999997765433220000                     000456666655 32   


Q ss_pred             eeeeeEecccCcCEEEEEEccCCCEEE-EEeCCCcEEEEECcCCce-ee--eeecccccCcccceEEEEECCCCCEEEEe
Q 006825          446 LYKCQEIQAHNGSIWSIKFSLDGRYLA-SAGEDCVIHVWQVVESER-KG--ELLEKQEDGHLNMLLLANGSPEPTSLSPK  521 (630)
Q Consensus       446 ~~~v~tL~gHt~~V~sVaFSpDG~~LA-SgS~DgtIrVWDl~tg~~-~~--~l~~~~~~gh~~~V~svafSpdg~~lasg  521 (630)
                         +..+...-..-+.|+|+||++.|+ +-+..+.|..+++..... +.  ..+ .......+..-.+++..+|.++++.
T Consensus       126 ---~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~g~pDG~~vD~~G~l~va~  201 (246)
T PF08450_consen  126 ---VTVVADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVF-IDFPGGPGYPDGLAVDSDGNLWVAD  201 (246)
T ss_dssp             ---EEEEEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEE-EE-SSSSCEEEEEEEBTTS-EEEEE
T ss_pred             ---EEEEecCcccccceEECCcchheeecccccceeEEEeccccccceeeeeeE-EEcCCCCcCCCcceEcCCCCEEEEE
Confidence               122223345678999999998665 667788899888863322 11  111 1112222346789999999998888


Q ss_pred             eCCCeeeeecccccccccccccCccccccEEEeCCCCceEEeccCCCCEEEEEEc-CC--CeEEEE
Q 006825          522 HLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWS-KS--QHLLSS  584 (630)
Q Consensus       522 s~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL~GHs~~V~sLafS-Pd--~~LaSg  584 (630)
                      ...+.|                       .+++..|+.+..+.-....+++++|. ++  .+++|.
T Consensus       202 ~~~~~I-----------------------~~~~p~G~~~~~i~~p~~~~t~~~fgg~~~~~L~vTt  244 (246)
T PF08450_consen  202 WGGGRI-----------------------VVFDPDGKLLREIELPVPRPTNCAFGGPDGKTLYVTT  244 (246)
T ss_dssp             ETTTEE-----------------------EEEETTSCEEEEEE-SSSSEEEEEEESTTSSEEEEEE
T ss_pred             cCCCEE-----------------------EEECCCccEEEEEcCCCCCEEEEEEECCCCCEEEEEe
Confidence            777777                       77888899888887666689999995 55  455554

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=98.13  E-value=3.6e-05  Score=81.99  Aligned_cols=115  Identities=14%  Similarity=0.098  Sum_probs=84.3

Q ss_pred             cceEEEeecCCCe-EE-EecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCC
Q 006825          411 RRSSSATDDSQDV-SF-HGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVES  488 (630)
Q Consensus       411 ~~~Vsa~~~s~d~-l~-Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg  488 (630)
                      ...++++.+...+ ++ ..++...+.+|.....      +...+.||-..++.|+|+||+++|+|+..|..|||=.....
T Consensus       110 ~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~------~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~  183 (390)
T KOG3914|consen  110 PTAISFIREDTSVLVADKAGDVYSFDILSADSG------RCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPAT  183 (390)
T ss_pred             cceeeeeeccceEEEEeecCCceeeeeeccccc------CcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcc
Confidence            3455555555555 22 3444566777765422      34557899999999999999999999999999999877665


Q ss_pred             ceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccc
Q 006825          489 ERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSI  536 (630)
Q Consensus       489 ~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~  536 (630)
                      ..+..+    .-||...|..++.-++ ..|++++.|+++++|+.....
T Consensus       184 f~Iesf----clGH~eFVS~isl~~~-~~LlS~sGD~tlr~Wd~~sgk  226 (390)
T KOG3914|consen  184 FVIESF----CLGHKEFVSTISLTDN-YLLLSGSGDKTLRLWDITSGK  226 (390)
T ss_pred             cchhhh----ccccHhheeeeeeccC-ceeeecCCCCcEEEEecccCC
Confidence            555555    5799999999998765 458999999999555554433

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=98.11  E-value=5.4e-06  Score=93.41  Aligned_cols=120  Identities=23%  Similarity=0.404  Sum_probs=93.3

Q ss_pred             EecccCcCEEEEEEccC-CCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeee
Q 006825          451 EIQAHNGSIWSIKFSLD-GRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEK  529 (630)
Q Consensus       451 tL~gHt~~V~sVaFSpD-G~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i  529 (630)
                      .+-||..+|+.+.|+|. ...||+++.|-.++.||++........    ..........|.|+.....+.+.+....|  
T Consensus       109 ~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys----~~~w~s~asqVkwnyk~p~vlasshg~~i--  182 (1081)
T KOG0309|consen  109 VLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYS----TSSWRSAASQVKWNYKDPNVLASSHGNDI--  182 (1081)
T ss_pred             EEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceee----eecccccCceeeecccCcchhhhccCCce--
Confidence            36799999999999995 458999999999999999876543222    23333445567777654444444455555  


Q ss_pred             ecccccccccccccCccccccEEEeC--CCCceEEeccCCCCEEEEEEcCC--CeEEEEECCCcEEEEeCCC
Q 006825          530 KRRGRSINRKSLSLDHMVVPETVFAL--SDKPICSFQGHLDDVLDLSWSKS--QHLLSSSMDKTVRLWHLSS  597 (630)
Q Consensus       530 ~~~~~~~~~~s~s~d~~i~~~~Vwdl--sgk~l~tL~GHs~~V~sLafSPd--~~LaSgS~DgtVrIWDl~t  597 (630)
                                           .+|+.  .+.+++.+++|...|+.+.|..-  ..+.+.++|++|+.||...
T Consensus       183 ---------------------~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~k  233 (1081)
T KOG0309|consen  183 ---------------------FVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSK  233 (1081)
T ss_pred             ---------------------EEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccc
Confidence                                 78887  56899999999999999999875  8899999999999999864

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=98.09  E-value=8.7e-05  Score=77.91  Aligned_cols=189  Identities=15%  Similarity=0.147  Sum_probs=127.8

Q ss_pred             CeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccC
Q 006825          422 DVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDG  501 (630)
Q Consensus       422 d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~g  501 (630)
                      +++++.+.|.++|+|-.....   ++-......-..++.++.+.++.+.|+.|-..|++.-+.+...-....+ ......
T Consensus        37 ~gv~~~s~drtvrv~lkrds~---q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~-~r~~~~  112 (404)
T KOG1409|consen   37 EGVISVSEDRTVRVWLKRDSG---QYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMTF-LKDYLA  112 (404)
T ss_pred             CCeEEccccceeeeEEecccc---ccCchhhhhCCCCceEeeeeccceEEEEEEecceEEEEEhhhhhhhcch-hhhhhh
Confidence            458899999999999654321   1111111223467899999999999999999999999887654333222 233578


Q ss_pred             cccceEEEEECCCCCEEEEeeCCCeeeeecccc--cccccc-----cccCc------------cccccEEEeCCCCceEE
Q 006825          502 HLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGR--SINRKS-----LSLDH------------MVVPETVFALSDKPICS  562 (630)
Q Consensus       502 h~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~--~~~~~s-----~s~d~------------~i~~~~Vwdlsgk~l~t  562 (630)
                      |...++.+-|+-....+++.+.|..+...-...  ......     ...+.            .+...++....-.++.+
T Consensus       113 h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~  192 (404)
T KOG1409|consen  113 HQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDALYAFVGDHSGQITMLKLEQNGCQLITT  192 (404)
T ss_pred             hhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeEEEEecccccceEEEEEeecCCceEEE
Confidence            999999999998889999998888764322111  111110     00010            11111222223357788


Q ss_pred             eccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCCCcEE--EEEecCCceEEEE
Q 006825          563 FQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCL--KIFSHSDYDISLV  614 (630)
Q Consensus       563 L~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg~~l--~t~~H~~~V~sVa  614 (630)
                      +.+|.+.|++++|.|. ++|.+|..|..|-+||+.-.+-+  ..+.|.+.|..+.
T Consensus       193 ~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~  247 (404)
T KOG1409|consen  193 FNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALS  247 (404)
T ss_pred             EcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhh
Confidence            9999999999999998 99999999999999999754433  2333888887776

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=97.99  E-value=0.0016  Score=70.53  Aligned_cols=224  Identities=8%  Similarity=-0.045  Sum_probs=116.4

Q ss_pred             ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCC------CCcc----ccCCcceE-----
Q 006825          350 NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDER------DTSS----EKGGRRSS-----  414 (630)
Q Consensus       350 ~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~------dt~s----~~gh~~~V-----  414 (630)
                      .+..++.++.+. .+|..+|+.+-+...+  ..+.+.....++..++...+..      .++.    ........     
T Consensus       107 ~v~v~~~~g~l~-ald~~tG~~~W~~~~~--~~~~~~p~v~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~  183 (377)
T TIGR03300       107 LVFVGTEKGEVI-ALDAEDGKELWRAKLS--SEVLSPPLVANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGS  183 (377)
T ss_pred             EEEEEcCCCEEE-EEECCCCcEeeeeccC--ceeecCCEEECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCC
Confidence            566778889998 9999999987765522  2222111112333333222211      1111    00000000     


Q ss_pred             EEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCc--CEEEEEEcc--CCCEEEEEeCCCcEEEEECcCCce
Q 006825          415 SATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNG--SIWSIKFSL--DGRYLASAGEDCVIHVWQVVESER  490 (630)
Q Consensus       415 sa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~--~V~sVaFSp--DG~~LASgS~DgtIrVWDl~tg~~  490 (630)
                      .........++.+..++++..+|..+++..-........+...  .+..+.-+|  .+..++.++.++.+..||..+++.
T Consensus       184 ~sp~~~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~  263 (377)
T TIGR03300       184 ASPVIADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRV  263 (377)
T ss_pred             CCCEEECCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcE
Confidence            0001112346778888999999987775311100000001100  001111111  355777788999999999999987


Q ss_pred             eeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeC-CCCceEEeccCCC-
Q 006825          491 KGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLD-  568 (630)
Q Consensus       491 ~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL~GHs~-  568 (630)
                      +....   ....    ....  ..+..++.+..++.+                       ..++. +|+.+..+..... 
T Consensus       264 ~W~~~---~~~~----~~p~--~~~~~vyv~~~~G~l-----------------------~~~d~~tG~~~W~~~~~~~~  311 (377)
T TIGR03300       264 LWKRD---ASSY----QGPA--VDDNRLYVTDADGVV-----------------------VALDRRSGSELWKNDELKYR  311 (377)
T ss_pred             EEeec---cCCc----cCce--EeCCEEEEECCCCeE-----------------------EEEECCCCcEEEccccccCC
Confidence            65531   1111    1111  134556666677777                       44444 4444433321111 


Q ss_pred             CEEEEEEcCCCeEEEEECCCcEEEEeCCCCcEEEEEe-cCCc
Q 006825          569 DVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDY  609 (630)
Q Consensus       569 ~V~sLafSPd~~LaSgS~DgtVrIWDl~tg~~l~t~~-H~~~  609 (630)
                      .+...... +++|+.++.||.|++||..+|+.+..++ +...
T Consensus       312 ~~ssp~i~-g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~~~  352 (377)
T TIGR03300       312 QLTAPAVV-GGYLVVGDFEGYLHWLSREDGSFVARLKTDGSG  352 (377)
T ss_pred             ccccCEEE-CCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCc
Confidence            11121221 2788899999999999999999999988 5543

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=97.96  E-value=0.0034  Score=77.21  Aligned_cols=163  Identities=10%  Similarity=0.041  Sum_probs=93.8

Q ss_pred             EEEEEEcc-CCCEEEEEeCCCcEEEEECcCCceeeeeecc----cccC------cccceEEEEECCCCC-EEEEeeCCCe
Q 006825          459 IWSIKFSL-DGRYLASAGEDCVIHVWQVVESERKGELLEK----QEDG------HLNMLLLANGSPEPT-SLSPKHLDNH  526 (630)
Q Consensus       459 V~sVaFSp-DG~~LASgS~DgtIrVWDl~tg~~~~~l~~~----~~~g------h~~~V~svafSpdg~-~lasgs~Dg~  526 (630)
                      -+.|+|+| ++.++++...++.|++||..++... .+...    ...+      .......++++|++. ++++...++.
T Consensus       685 P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~  763 (1057)
T PLN02919        685 PWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSS  763 (1057)
T ss_pred             CeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCe
Confidence            36899999 6777788888999999999876532 11100    0011      112345799999987 5566667788


Q ss_pred             eeeecccccccccccccCcccccc---EEEeCCCCceEEeccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCCCcEEE
Q 006825          527 LEKKRRGRSINRKSLSLDHMVVPE---TVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLK  602 (630)
Q Consensus       527 I~i~~~~~~~~~~s~s~d~~i~~~---~Vwdlsgk~l~tL~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg~~l~  602 (630)
                      |++++............+.. .+.   .+++..+....   ..-..-..++|+++ .++++-+.+++|++||..++.+..
T Consensus       764 Irv~D~~tg~~~~~~gg~~~-~~~~l~~fG~~dG~g~~---~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~t  839 (1057)
T PLN02919        764 IRALDLKTGGSRLLAGGDPT-FSDNLFKFGDHDGVGSE---VLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTT  839 (1057)
T ss_pred             EEEEECCCCcEEEEEecccc-cCcccccccCCCCchhh---hhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEE
Confidence            87776543211000000000 000   01111110000   01112358899998 788889999999999999887664


Q ss_pred             EEec--------------CCceEEEE-cCCCcEEEEecc
Q 006825          603 IFSH--------------SDYDISLV-DRLMLRFAYGAF  626 (630)
Q Consensus       603 t~~H--------------~~~V~sVa-s~~~~~lAsgs~  626 (630)
                      ....              -.....|+ ++++..++++..
T Consensus       840 iaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~  878 (1057)
T PLN02919        840 LAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTN  878 (1057)
T ss_pred             EeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECC
Confidence            4331              12456677 667776666543

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=97.96  E-value=3e-05  Score=81.34  Aligned_cols=159  Identities=14%  Similarity=0.148  Sum_probs=115.6

Q ss_pred             EEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccCccc
Q 006825          425 FHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLN  504 (630)
Q Consensus       425 ~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~  504 (630)
                      ++.+.+-.|-+-++.++      ..+.|. -++-|.++.|.-.+++|.-|...|.|-+.|++.+..-.... ...--|..
T Consensus       228 fs~G~sqqv~L~nvetg------~~qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~-a~rlyh~S  299 (425)
T KOG2695|consen  228 FSVGLSQQVLLTNVETG------HQQSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWC-AQRLYHDS  299 (425)
T ss_pred             ecccccceeEEEEeecc------cccccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcc-eEEEEcCc
Confidence            44556667888888776      233444 66779999999999999999999999999998652111100 00134667


Q ss_pred             ceEEEEECC-CCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeC----CCCceEEeccCCCCEEEEEEc--C
Q 006825          505 MLLLANGSP-EPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL----SDKPICSFQGHLDDVLDLSWS--K  577 (630)
Q Consensus       505 ~V~svafSp-dg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl----sgk~l~tL~GHs~~V~sLafS--P  577 (630)
                      .|+++..-. ++.+|.+.+.+|+|                       ++||.    .++-+.+++||...-.-+-++  +
T Consensus       300 svtslq~Lq~s~q~LmaS~M~gki-----------------------kLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~  356 (425)
T KOG2695|consen  300 SVTSLQILQFSQQKLMASDMTGKI-----------------------KLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKE  356 (425)
T ss_pred             chhhhhhhccccceEeeccCcCce-----------------------eEeeehhhhcccceeeeeccccccccccccccc
Confidence            777777655 67888888899999                       77776    234599999997655444443  4


Q ss_pred             C-CeEEEEECCCcEEEEeCCCCcEEEEEec-----CCceEEEE
Q 006825          578 S-QHLLSSSMDKTVRLWHLSSKTCLKIFSH-----SDYDISLV  614 (630)
Q Consensus       578 d-~~LaSgS~DgtVrIWDl~tg~~l~t~~H-----~~~V~sVa  614 (630)
                      . +.+++++.|...|||.+..|.++.+++-     ..-+++++
T Consensus       357 eeg~I~s~GdDcytRiWsl~~ghLl~tipf~~s~~e~d~~sv~  399 (425)
T KOG2695|consen  357 EEGSIFSVGDDCYTRIWSLDSGHLLCTIPFPYSASEVDIPSVA  399 (425)
T ss_pred             ccceEEEccCeeEEEEEecccCceeeccCCCCcccccccccee
Confidence            4 8999999999999999999999999872     22445566

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=97.93  E-value=0.013  Score=59.56  Aligned_cols=191  Identities=9%  Similarity=0.008  Sum_probs=112.3

Q ss_pred             ecCCCccEecccCCCCceeEEecCCccCCEEEEEEc-CCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCcE
Q 006825          354 GNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASS-VTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVR  432 (630)
Q Consensus       354 gS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfS-pdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~  432 (630)
                      --..+.+. .|+..++........+    ...+++. ++|.++++.                              . ..
T Consensus        18 D~~~~~i~-~~~~~~~~~~~~~~~~----~~G~~~~~~~g~l~v~~------------------------------~-~~   61 (246)
T PF08450_consen   18 DIPGGRIY-RVDPDTGEVEVIDLPG----PNGMAFDRPDGRLYVAD------------------------------S-GG   61 (246)
T ss_dssp             ETTTTEEE-EEETTTTEEEEEESSS----EEEEEEECTTSEEEEEE------------------------------T-TC
T ss_pred             EcCCCEEE-EEECCCCeEEEEecCC----CceEEEEccCCEEEEEE------------------------------c-Cc
Confidence            33445666 6777776554322211    5566666 565544432                              2 22


Q ss_pred             EEEEeCCCCcccceeeeeEe--cc-cCcCEEEEEEccCCCEEEEEeCC--------CcEEEEECcCCceeeeeecccccC
Q 006825          433 VRQYGKSCKDLTALYKCQEI--QA-HNGSIWSIKFSLDGRYLASAGED--------CVIHVWQVVESERKGELLEKQEDG  501 (630)
Q Consensus       433 VriWd~~~~el~~~~~v~tL--~g-Ht~~V~sVaFSpDG~~LASgS~D--------gtIrVWDl~tg~~~~~l~~~~~~g  501 (630)
                      +.++|..+++...+   ..+  .. .....+.+++.|+|++.++-...        +.|..++.. ++ +..+     ..
T Consensus        62 ~~~~d~~~g~~~~~---~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~-~~~~-----~~  131 (246)
T PF08450_consen   62 IAVVDPDTGKVTVL---ADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GK-VTVV-----AD  131 (246)
T ss_dssp             EEEEETTTTEEEEE---EEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SE-EEEE-----EE
T ss_pred             eEEEecCCCcEEEE---eeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-Ce-EEEE-----ec
Confidence            45557766644322   222  22 34568999999999988886644        446666665 33 2222     22


Q ss_pred             cccceEEEEECCCCCEEE-EeeCCCeeeeecccccccccccccCccccccEEEeC--CCC------ceEEeccCCCCEEE
Q 006825          502 HLNMLLLANGSPEPTSLS-PKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL--SDK------PICSFQGHLDDVLD  572 (630)
Q Consensus       502 h~~~V~svafSpdg~~la-sgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl--sgk------~l~tL~GHs~~V~s  572 (630)
                      .......++|+|+++.|+ +-+..+.|                       ..+++  .+.      .+..+.+-.+..-.
T Consensus       132 ~~~~pNGi~~s~dg~~lyv~ds~~~~i-----------------------~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG  188 (246)
T PF08450_consen  132 GLGFPNGIAFSPDGKTLYVADSFNGRI-----------------------WRFDLDADGGELSNRRVFIDFPGGPGYPDG  188 (246)
T ss_dssp             EESSEEEEEEETTSSEEEEEETTTTEE-----------------------EEEEEETTTCCEEEEEEEEE-SSSSCEEEE
T ss_pred             CcccccceEECCcchheeeccccccee-----------------------EEEeccccccceeeeeeEEEcCCCCcCCCc
Confidence            235567899999998665 45555555                       22332  121      11222222234678


Q ss_pred             EEEcCC-CeEEEEECCCcEEEEeCCCCcEEEEEe-cCCceEEEE
Q 006825          573 LSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYDISLV  614 (630)
Q Consensus       573 LafSPd-~~LaSgS~DgtVrIWDl~tg~~l~t~~-H~~~V~sVa  614 (630)
                      +++..+ .++++.-..+.|.+++.. |+.+..+. -...+++++
T Consensus       189 ~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~  231 (246)
T PF08450_consen  189 LAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCA  231 (246)
T ss_dssp             EEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEE
T ss_pred             ceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEE
Confidence            999988 666777778999999987 99999888 445888888

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=97.87  E-value=0.0018  Score=71.28  Aligned_cols=296  Identities=14%  Similarity=0.102  Sum_probs=163.4

Q ss_pred             CCccccccCCCceeecCCCCcccCCCccccccCCC--CCcccccccEEEEECCCCcEEEEeeecCCC--ceeEEEEcC--
Q 006825          249 NCKRMDESRGDSMSINGNGNYIGNSGEVVEDFDGN--GTAGVAEQGCLIKNLDNGKEFVVNEIQEDG--TWKKVKEVG--  322 (630)
Q Consensus       249 ~~~~~d~~~~~~~~~s~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~I~~LddG~~~~v~e~~~dg--~~~~l~dv~--  322 (630)
                      .|.+|=...---+-|||+++||+.-+.-.-+ .|.  +..--..+.|.|||...|..+....+-.--  .|..++=..  
T Consensus        65 ~l~~~~~~~V~~~~fSP~~kYL~tw~~~pi~-~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D  143 (561)
T COG5354          65 KLVRFRHPDVKYLDFSPNEKYLVTWSREPII-EPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDD  143 (561)
T ss_pred             heeeeecCCceecccCcccceeeeeccCCcc-ChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecc
Confidence            4555544444446899999999776632110 000  011122236899999999765543331111  231111111  


Q ss_pred             ------CCceEeeec---------ceeeecCccceeEEEeecc-----eEe-----ecCCCccEecccCCCCceeEEecC
Q 006825          323 ------TGRQLTIEE---------FEMCVGHSPIVQELMRRQN-----VEE-----GNKDSFDLNNNGSSGGGMKSKKKG  377 (630)
Q Consensus       323 ------TG~~lt~ee---------f~~l~GHs~~V~~Lafs~~-----laS-----gS~D~tvr~vWD~~tG~~~~~lk~  377 (630)
                            -|..|.+.|         |..+.  ..-|+...++|-     ||.     +..+.+++ +|.+-.+..+.+...
T Consensus       144 ~y~ARvv~~sl~i~e~t~n~~~~p~~~lr--~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~-i~sIp~~s~l~tk~l  220 (561)
T COG5354         144 KYVARVVGSSLYIHEITDNIEEHPFKNLR--PVGILDFSISPEGNHDELAYWTPEKLNKPAMVR-ILSIPKNSVLVTKNL  220 (561)
T ss_pred             hhhhhhccCeEEEEecCCccccCchhhcc--ccceeeEEecCCCCCceEEEEccccCCCCcEEE-EEEccCCCeeeeeee
Confidence                  122222222         22222  233455556652     222     45567777 777765555444332


Q ss_pred             CccCCEEEEEEcCCCCeEEeec---C--CC----------------CCccccCCcceEEEeecCCCe----EEEecCCcE
Q 006825          378 SWFKSIRTVASSVTGHKERRSS---D--ER----------------DTSSEKGGRRSSSATDDSQDV----SFHGQERVR  432 (630)
Q Consensus       378 gH~~~V~sVAfSpdG~~lasgS---~--D~----------------dt~s~~gh~~~Vsa~~~s~d~----l~Sgs~Dg~  432 (630)
                      --.+.+ .+.|.+.|++|.---   .  .+                +..-+++-...|....+.+..    +++|..+.+
T Consensus       221 fk~~~~-qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~  299 (561)
T COG5354         221 FKVSGV-QLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPAS  299 (561)
T ss_pred             Eeeccc-EEEEecCCceEEEEEEEeeecccceeccceEEEEeecccccceeccccccceeeeecccCCceeEEecccccc
Confidence            122233 266777777643211   0  01                111133445566666665443    788889999


Q ss_pred             EEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCC---CcEEEEECcCCceee-eeecccccCcccceEE
Q 006825          433 VRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGED---CVIHVWQVVESERKG-ELLEKQEDGHLNMLLL  508 (630)
Q Consensus       433 VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~D---gtIrVWDl~tg~~~~-~l~~~~~~gh~~~V~s  508 (630)
                      +-++|+... +       .+..-...=+.+-|+|.+++++.++.|   |.|-+||......+. .+     .+  .....
T Consensus       300 ~s~~~lr~N-l-------~~~~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~-----~~--~n~s~  364 (561)
T COG5354         300 VSVFDLRGN-L-------RFYFPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAF-----NG--LNTSY  364 (561)
T ss_pred             eeecccccc-e-------EEecCCcccccccccCcccEEEEecCCccccceEEeccCCceEEEEEe-----ec--CCceE
Confidence            999998765 2       234455666789999999999999877   569999987654333 22     22  23345


Q ss_pred             EEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeCCCCceEEeccCCCCEEEEEEcCC-CeEEEEECC
Q 006825          509 ANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMD  587 (630)
Q Consensus       509 vafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL~GHs~~V~sLafSPd-~~LaSgS~D  587 (630)
                      +.|+||+.++.+....-..              ..|..+   .||++.|..+.       ..+.+.|-|. ++..+.|.+
T Consensus       365 ~~wspd~qF~~~~~ts~k~--------------~~Dn~i---~l~~v~g~~~f-------el~~~~W~p~~~~~ttsSs~  420 (561)
T COG5354         365 CDWSPDGQFYDTDTTSEKL--------------RVDNSI---KLWDVYGAKVF-------ELTNITWDPSGQYVTTSSSC  420 (561)
T ss_pred             eeccCCceEEEecCCCccc--------------ccCcce---EEEEecCchhh-------hhhhccccCCcccceeeccC
Confidence            7899999999887543322              233444   78888776654       3456667776 554444444


Q ss_pred             C
Q 006825          588 K  588 (630)
Q Consensus       588 g  588 (630)
                      .
T Consensus       421 ~  421 (561)
T COG5354         421 P  421 (561)
T ss_pred             C
Confidence            3

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=97.87  E-value=0.00088  Score=72.96  Aligned_cols=129  Identities=15%  Similarity=0.155  Sum_probs=98.3

Q ss_pred             EcC-CCCeEEeecCCC-------CCc-cccCCcceEEEeecCCC--eEEEecCCc-EEEEEeCCCCcccceeeeeEeccc
Q 006825          388 SSV-TGHKERRSSDER-------DTS-SEKGGRRSSSATDDSQD--VSFHGQERV-RVRQYGKSCKDLTALYKCQEIQAH  455 (630)
Q Consensus       388 fSp-dG~~lasgS~D~-------dt~-s~~gh~~~Vsa~~~s~d--~l~Sgs~Dg-~VriWd~~~~el~~~~~v~tL~gH  455 (630)
                      |++ +|.+++..|..+       +.. ...++...|.-..+..+  .++.|..|+ .+-+||..+++      +..+.+.
T Consensus       327 fa~~~Gd~ia~VSRGkaFi~~~~~~~~iqv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e------~kr~e~~  400 (668)
T COG4946         327 FAVVNGDYIALVSRGKAFIMRPWDGYSIQVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGE------VKRIEKD  400 (668)
T ss_pred             hccCCCcEEEEEecCcEEEECCCCCeeEEcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCce------EEEeeCC
Confidence            554 678888877776       111 13444555555555544  488999999 99999998885      4567778


Q ss_pred             CcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCee
Q 006825          456 NGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHL  527 (630)
Q Consensus       456 t~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I  527 (630)
                      -+.|.+|+.+++|++++.+-.-..|.+.|+.++.....     .....+.|....|||+++++|.+.-++.+
T Consensus       401 lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~i-----dkS~~~lItdf~~~~nsr~iAYafP~gy~  467 (668)
T COG4946         401 LGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLI-----DKSEYGLITDFDWHPNSRWIAYAFPEGYY  467 (668)
T ss_pred             ccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEe-----cccccceeEEEEEcCCceeEEEecCccee
Confidence            89999999999999999988888899999999875433     34455789999999999999999887754

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=97.83  E-value=0.001  Score=73.78  Aligned_cols=140  Identities=14%  Similarity=0.167  Sum_probs=100.1

Q ss_pred             CccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCc
Q 006825          378 SWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNG  457 (630)
Q Consensus       378 gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~  457 (630)
                      --.++|.+|.|+|+|+-++                           ++-|-.--+|-+||+++.      .+  +.--.+
T Consensus       268 ~k~GPVhdv~W~~s~~EF~---------------------------VvyGfMPAkvtifnlr~~------~v--~df~eg  312 (566)
T KOG2315|consen  268 LKEGPVHDVTWSPSGREFA---------------------------VVYGFMPAKVTIFNLRGK------PV--FDFPEG  312 (566)
T ss_pred             CCCCCceEEEECCCCCEEE---------------------------EEEecccceEEEEcCCCC------Ee--EeCCCC
Confidence            3467888888888876443                           356666778999998765      22  333467


Q ss_pred             CEEEEEEccCCCEEEEEeCC---CcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccc
Q 006825          458 SIWSIKFSLDGRYLASAGED---CVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGR  534 (630)
Q Consensus       458 ~V~sVaFSpDG~~LASgS~D---gtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~  534 (630)
                      +=+++-|+|.|++|+-+|.+   |.|-|||+.+.+++..+     .  ....+.+.|+|||.+++++...-.++      
T Consensus       313 pRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~-----~--a~~tt~~eW~PdGe~flTATTaPRlr------  379 (566)
T KOG2315|consen  313 PRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKF-----K--AANTTVFEWSPDGEYFLTATTAPRLR------  379 (566)
T ss_pred             CccceEECCCCCEEEEeecCCCCCceEEEeccchhhcccc-----c--cCCceEEEEcCCCcEEEEEeccccEE------
Confidence            78899999999999999866   78999999987666553     1  13345679999999999997654442      


Q ss_pred             cccccccccCccccccEEEeCCCCceEEeccCCCCEEEEEEcC
Q 006825          535 SINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSK  577 (630)
Q Consensus       535 ~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL~GHs~~V~sLafSP  577 (630)
                              .|+.+   +||+.+|.+++...=.. ..+.+.|-|
T Consensus       380 --------vdNg~---KiwhytG~~l~~~~f~s-EL~qv~W~P  410 (566)
T KOG2315|consen  380 --------VDNGI---KIWHYTGSLLHEKMFKS-ELLQVEWRP  410 (566)
T ss_pred             --------ecCCe---EEEEecCceeehhhhhH-hHhheeeee
Confidence                    34455   89999998876533221 566777765

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=97.82  E-value=0.017  Score=62.22  Aligned_cols=204  Identities=15%  Similarity=0.066  Sum_probs=108.0

Q ss_pred             cccEEEEECCCCcEEEEeeecCCCceeEEEEcCC-CceEeeecceeeecC--------ccceeEEEeec---ce-EeecC
Q 006825          290 EQGCLIKNLDNGKEFVVNEIQEDGTWKKVKEVGT-GRQLTIEEFEMCVGH--------SPIVQELMRRQ---NV-EEGNK  356 (630)
Q Consensus       290 ~~~~~I~~LddG~~~~v~e~~~dg~~~~l~dv~T-G~~lt~eef~~l~GH--------s~~V~~Lafs~---~l-aSgS~  356 (630)
                      ...|.|---.+|+.++|..++. |. ..+.++.. |+...........|+        .+-..++.|.|   .+ ++--.
T Consensus        87 ~~p~~i~~~~~g~~l~vany~~-g~-v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG  164 (345)
T PF10282_consen   87 SSPCHIAVDPDGRFLYVANYGG-GS-VSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLG  164 (345)
T ss_dssp             SCEEEEEECTTSSEEEEEETTT-TE-EEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETT
T ss_pred             CCcEEEEEecCCCEEEEEEccC-Ce-EEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecC
Confidence            3456666667777777766532 33 34555554 555432222222222        23356788988   22 22222


Q ss_pred             CCccEecccCCCCc--e--eEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCcE
Q 006825          357 DSFDLNNNGSSGGG--M--KSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVR  432 (630)
Q Consensus       357 D~tvr~vWD~~tG~--~--~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~  432 (630)
                      -..|. ++++....  .  ...++......=+.++|+|+|+++.                            +....+.+
T Consensus       165 ~D~v~-~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Y----------------------------v~~e~s~~  215 (345)
T PF10282_consen  165 ADRVY-VYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAY----------------------------VVNELSNT  215 (345)
T ss_dssp             TTEEE-EEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEE----------------------------EEETTTTE
T ss_pred             CCEEE-EEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEE----------------------------EecCCCCc
Confidence            23555 67765543  2  1223334445567899999988764                            23334455


Q ss_pred             EEEEeCC--CCcccceeeeeEec-cc--CcCEEEEEEccCCCEEEEEe-CCCcEEEEECc--CCceeeeeecccccCccc
Q 006825          433 VRQYGKS--CKDLTALYKCQEIQ-AH--NGSIWSIKFSLDGRYLASAG-EDCVIHVWQVV--ESERKGELLEKQEDGHLN  504 (630)
Q Consensus       433 VriWd~~--~~el~~~~~v~tL~-gH--t~~V~sVaFSpDG~~LASgS-~DgtIrVWDl~--tg~~~~~l~~~~~~gh~~  504 (630)
                      |.+|+..  .+.+.....+.++. +.  ......|+++|||++|+.+. ...+|-+|++.  ++.. ..+. . ..-...
T Consensus       216 v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l-~~~~-~-~~~~G~  292 (345)
T PF10282_consen  216 VSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTL-TLVQ-T-VPTGGK  292 (345)
T ss_dssp             EEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTE-EEEE-E-EEESSS
T ss_pred             EEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCce-EEEE-E-EeCCCC
Confidence            5555554  33222222222221 11  22688999999999877765 56789999993  2332 2211 0 111123


Q ss_pred             ceEEEEECCCCCEEEEeeCC-Cee
Q 006825          505 MLLLANGSPEPTSLSPKHLD-NHL  527 (630)
Q Consensus       505 ~V~svafSpdg~~lasgs~D-g~I  527 (630)
                      ....++++|+|++|+++..+ +.|
T Consensus       293 ~Pr~~~~s~~g~~l~Va~~~s~~v  316 (345)
T PF10282_consen  293 FPRHFAFSPDGRYLYVANQDSNTV  316 (345)
T ss_dssp             SEEEEEE-TTSSEEEEEETTTTEE
T ss_pred             CccEEEEeCCCCEEEEEecCCCeE
Confidence            46789999999999887644 566

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PRK04043 tolB translocation protein TolB; Provisional

Probab=97.81  E-value=0.007  Score=67.17  Aligned_cols=199  Identities=9%  Similarity=-0.036  Sum_probs=110.1

Q ss_pred             ceeEEEeec---c-eEeecCC---CccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccccCCcce
Q 006825          341 IVQELMRRQ---N-VEEGNKD---SFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRS  413 (630)
Q Consensus       341 ~V~~Lafs~---~-laSgS~D---~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~  413 (630)
                      ......|+|   . ++-.+.+   ..+. ++|+.+|+......  ..+.+...+|||||++++-...             
T Consensus       189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iy-v~dl~tg~~~~lt~--~~g~~~~~~~SPDG~~la~~~~-------------  252 (419)
T PRK04043        189 LNIFPKWANKEQTAFYYTSYGERKPTLY-KYNLYTGKKEKIAS--SQGMLVVSDVSKDGSKLLLTMA-------------  252 (419)
T ss_pred             CeEeEEECCCCCcEEEEEEccCCCCEEE-EEECCCCcEEEEec--CCCcEEeeEECCCCCEEEEEEc-------------
Confidence            444566666   2 3333333   4455 77888887655432  3445667889999987763211             


Q ss_pred             EEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeC-CC--cEEEEECcCCce
Q 006825          414 SSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGE-DC--VIHVWQVVESER  490 (630)
Q Consensus       414 Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~-Dg--tIrVWDl~tg~~  490 (630)
                                   ...+..|+++++.+++.      +.|..+........|+|||+.|+-.+. .+  .|.+.|+.+++.
T Consensus       253 -------------~~g~~~Iy~~dl~~g~~------~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~  313 (419)
T PRK04043        253 -------------PKGQPDIYLYDTNTKTL------TQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSV  313 (419)
T ss_pred             -------------cCCCcEEEEEECCCCcE------EEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCe
Confidence                         11245688888877643      334444443445689999987766553 33  577778877765


Q ss_pred             eeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeCCCCceEEeccCCCCE
Q 006825          491 KGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDV  570 (630)
Q Consensus       491 ~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL~GHs~~V  570 (630)
                      .+..    ..+..    ...|+|||+.|+.......-.            ... ... ...+.++.+...+.|.... ..
T Consensus       314 ~rlt----~~g~~----~~~~SPDG~~Ia~~~~~~~~~------------~~~-~~~-~I~v~d~~~g~~~~LT~~~-~~  370 (419)
T PRK04043        314 EQVV----FHGKN----NSSVSTYKNYIVYSSRETNNE------------FGK-NTF-NLYLISTNSDYIRRLTANG-VN  370 (419)
T ss_pred             EeCc----cCCCc----CceECCCCCEEEEEEcCCCcc------------cCC-CCc-EEEEEECCCCCeEECCCCC-Cc
Confidence            4332    12221    248999999988775432100            000 000 0034455444445554332 23


Q ss_pred             EEEEEcCC-CeEEEEEC-CCc--EEEEeCCC
Q 006825          571 LDLSWSKS-QHLLSSSM-DKT--VRLWHLSS  597 (630)
Q Consensus       571 ~sLafSPd-~~LaSgS~-Dgt--VrIWDl~t  597 (630)
                      ....|+|| ++|+-... .+.  +.+.++..
T Consensus       371 ~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g  401 (419)
T PRK04043        371 QFPRFSSDGGSIMFIKYLGNQSALGIIRLNY  401 (419)
T ss_pred             CCeEECCCCCEEEEEEccCCcEEEEEEecCC
Confidence            36889999 66654443 233  44555543

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=97.81  E-value=0.014  Score=61.73  Aligned_cols=209  Identities=11%  Similarity=0.040  Sum_probs=127.6

Q ss_pred             cceeEEEeecceEeecCCCccEecccCCCCceeEEecC---CccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEE
Q 006825          340 PIVQELMRRQNVEEGNKDSFDLNNNGSSGGGMKSKKKG---SWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSA  416 (630)
Q Consensus       340 ~~V~~Lafs~~laSgS~D~tvr~vWD~~tG~~~~~lk~---gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa  416 (630)
                      +.+-.++++|        ++--.+||..+|+.++.+..   .|...  -.+||+||++|.+.-.|.              
T Consensus        17 ~~avafaRRP--------G~~~~v~D~~~g~~~~~~~a~~gRHFyG--Hg~fs~dG~~LytTEnd~--------------   72 (305)
T PF07433_consen   17 PEAVAFARRP--------GTFALVFDCRTGQLLQRLWAPPGRHFYG--HGVFSPDGRLLYTTENDY--------------   72 (305)
T ss_pred             CeEEEEEeCC--------CcEEEEEEcCCCceeeEEcCCCCCEEec--CEEEcCCCCEEEEecccc--------------
Confidence            3445566677        11112889999998876652   12211  268999999998754442              


Q ss_pred             eecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEe------------------CCC
Q 006825          417 TDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAG------------------EDC  478 (630)
Q Consensus       417 ~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS------------------~Dg  478 (630)
                                ....|.|-+||...    .+..+.++..|---=-.|.+.|||+.|+.+-                  .+-
T Consensus        73 ----------~~g~G~IgVyd~~~----~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~p  138 (305)
T PF07433_consen   73 ----------ETGRGVIGVYDAAR----GYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQP  138 (305)
T ss_pred             ----------CCCcEEEEEEECcC----CcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCC
Confidence                      23578899999872    2335667766654455688999997777652                  122


Q ss_pred             cEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeC-CC
Q 006825          479 VIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SD  557 (630)
Q Consensus       479 tIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sg  557 (630)
                      .+-+-|..+|+.+.+.. ....-|...+.-+++.++|..+...-..+.-                  ...+..+.-. .+
T Consensus       139 sL~~ld~~sG~ll~q~~-Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~------------------~~~~PLva~~~~g  199 (305)
T PF07433_consen  139 SLVYLDARSGALLEQVE-LPPDLHQLSIRHLAVDGDGTVAFAMQYQGDP------------------GDAPPLVALHRRG  199 (305)
T ss_pred             ceEEEecCCCceeeeee-cCccccccceeeEEecCCCcEEEEEecCCCC------------------CccCCeEEEEcCC
Confidence            34444556666555432 1114467788899999888776655333311                  0000011111 22


Q ss_pred             CceEEe-------ccCCCCEEEEEEcCC-CeE-EEEECCCcEEEEeCCCCcEEEEEe
Q 006825          558 KPICSF-------QGHLDDVLDLSWSKS-QHL-LSSSMDKTVRLWHLSSKTCLKIFS  605 (630)
Q Consensus       558 k~l~tL-------~GHs~~V~sLafSPd-~~L-aSgS~DgtVrIWDl~tg~~l~t~~  605 (630)
                      +.+..+       ..-.+.|-+|+++++ .++ +|+=.-+.+.+||..+++++....
T Consensus       200 ~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~  256 (305)
T PF07433_consen  200 GALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVP  256 (305)
T ss_pred             CcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccc
Confidence            222222       223467899999999 555 566678899999999999988765

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=97.81  E-value=0.0003  Score=76.16  Aligned_cols=263  Identities=13%  Similarity=0.083  Sum_probs=166.3

Q ss_pred             CccceeEEEeec--ceEeecCCCccEecccCC--CCceeEEecCCccCCEEEEEEcCCCCeEEeecC-CCCCc-------
Q 006825          338 HSPIVQELMRRQ--NVEEGNKDSFDLNNNGSS--GGGMKSKKKGSWFKSIRTVASSVTGHKERRSSD-ERDTS-------  405 (630)
Q Consensus       338 Hs~~V~~Lafs~--~laSgS~D~tvr~vWD~~--tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~-D~dt~-------  405 (630)
                      |...|+.+.-.-  ++.++|.|+.++ .|.-.  .|....+-...|+..|.+++.+-+|-+..|.++ |+...       
T Consensus         8 hrd~i~hv~~tka~fiiqASlDGh~K-FWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~   86 (558)
T KOG0882|consen    8 HRDVITHVFPTKAKFIIQASLDGHKK-FWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENF   86 (558)
T ss_pred             ccceeeeEeeehhheEEeeecchhhh-hcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeecc
Confidence            666677766554  788999999999 99753  244333322389999999999999999999887 66211       


Q ss_pred             ---------cccCCcceEEEeecCCCe-EEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEe
Q 006825          406 ---------SEKGGRRSSSATDDSQDV-SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAG  475 (630)
Q Consensus       406 ---------s~~gh~~~Vsa~~~s~d~-l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS  475 (630)
                               .+++-...+.+-.+.... .++--.++.+.++|....-..   ....-+-|..+|.++.+++-+..++|..
T Consensus        87 DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q---~~~fkklH~sPV~~i~y~qa~Ds~vSiD  163 (558)
T KOG0882|consen   87 DMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQ---DGYFKKLHFSPVKKIRYNQAGDSAVSID  163 (558)
T ss_pred             chhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCc---cceecccccCceEEEEeeccccceeecc
Confidence                     133333333322222112 344557889999987654211   2233356999999999999999999998


Q ss_pred             CCCcEEEEECcC-Cc-----eeeeee----cccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccc---cc
Q 006825          476 EDCVIHVWQVVE-SE-----RKGELL----EKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKS---LS  542 (630)
Q Consensus       476 ~DgtIrVWDl~t-g~-----~~~~l~----~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s---~s  542 (630)
                      ..|.|.-|.... -+     ....+.    ...+.-......++.|+|++..+.+-..|..|++.....+.....   ..
T Consensus       164 ~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~  243 (558)
T KOG0882|consen  164 ISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVL  243 (558)
T ss_pred             ccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccc
Confidence            899999999863 11     111100    011122335567899999999999999999997666544322111   11


Q ss_pred             cCccccccEEEeCC----C---CceEEeccCCCCE-EEEEEcCC-CeEEEEECCCcEEEEeCCCCcEEEEEe
Q 006825          543 LDHMVVPETVFALS----D---KPICSFQGHLDDV-LDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS  605 (630)
Q Consensus       543 ~d~~i~~~~Vwdls----g---k~l~tL~GHs~~V-~sLafSPd-~~LaSgS~DgtVrIWDl~tg~~l~t~~  605 (630)
                      .+....+...+.+.    +   ..-+.++.|...+ +.+.|... ++|+-|..=| |++.++.++++++++.
T Consensus       244 t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~tn~v~ri~g  314 (558)
T KOG0882|consen  244 TDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDTNTVVRILG  314 (558)
T ss_pred             hhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeecCeEEEEec
Confidence            11111111111111    1   1112344454433 56778777 8999888766 8999999999999997

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=97.81  E-value=7.8e-05  Score=84.03  Aligned_cols=147  Identities=13%  Similarity=0.225  Sum_probs=107.2

Q ss_pred             EEEecCCcEEEEEeCCCCc----------ccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeee
Q 006825          424 SFHGQERVRVRQYGKSCKD----------LTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGE  493 (630)
Q Consensus       424 l~Sgs~Dg~VriWd~~~~e----------l~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~  493 (630)
                      ++.|+.||.+++..+.+..          ...+.+.|+|.||.+.|.-+.|+.+.+.|-|...+|.|.||=+-.|.-..+
T Consensus        29 IAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~EE  108 (1189)
T KOG2041|consen   29 IACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWCEE  108 (1189)
T ss_pred             EEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCceEEEEeeecccHHHH
Confidence            5667778888777654321          123445689999999999999999999999999999999999988765544


Q ss_pred             eecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeCCCCceEEeccCCCCEEEE
Q 006825          494 LLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDL  573 (630)
Q Consensus       494 l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL~GHs~~V~sL  573 (630)
                      ++   .......|.+++|..||..|...-.||.|-+-.           .++    .+||.-      .|+|.  ....+
T Consensus       109 Mi---NnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGs-----------vdG----NRIwgK------eLkg~--~l~hv  162 (1189)
T KOG2041|consen  109 MI---NNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGS-----------VDG----NRIWGK------ELKGQ--LLAHV  162 (1189)
T ss_pred             Hh---hCcCccEEEEEEEcCCCcEEEEEEccCCEEEEe-----------ecc----ceecch------hcchh--eccce
Confidence            43   245567788999999999999999999872211           111    155542      12221  12368


Q ss_pred             EEcCC-CeEEEEECCCcEEEEeCC
Q 006825          574 SWSKS-QHLLSSSMDKTVRLWHLS  596 (630)
Q Consensus       574 afSPd-~~LaSgS~DgtVrIWDl~  596 (630)
                      .|++| ..++.+-..|.+.|+|..
T Consensus       163 ~ws~D~~~~Lf~~ange~hlydnq  186 (1189)
T KOG2041|consen  163 LWSEDLEQALFKKANGETHLYDNQ  186 (1189)
T ss_pred             eecccHHHHHhhhcCCcEEEeccc
Confidence            89999 777788888999999975

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=97.80  E-value=0.0066  Score=62.84  Aligned_cols=209  Identities=14%  Similarity=0.073  Sum_probs=111.2

Q ss_pred             ccceeEEEeec---ceEeecCCCccEecccCCCCceeEEecCCc------cCCEEEEEEcCCCCeEEeecCCCCCccccC
Q 006825          339 SPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKKKGSW------FKSIRTVASSVTGHKERRSSDERDTSSEKG  409 (630)
Q Consensus       339 s~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~lk~gH------~~~V~sVAfSpdG~~lasgS~D~dt~s~~g  409 (630)
                      .+.-+.|+|+|   .||-+..-++|+ +.|+. |..+..+...+      ...|-.++|-.--                 
T Consensus        43 ~PQWRkl~WSpD~tlLa~a~S~G~i~-vfdl~-g~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~-----------------  103 (282)
T PF15492_consen   43 NPQWRKLAWSPDCTLLAYAESTGTIR-VFDLM-GSELFVIPPAMSFPGDLSDAIAGLIFLEYK-----------------  103 (282)
T ss_pred             CchheEEEECCCCcEEEEEcCCCeEE-EEecc-cceeEEcCcccccCCccccceeeeEeeccc-----------------
Confidence            35567789999   688888889999 99985 45555555322      1222223332210                 


Q ss_pred             CcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEec---ccCcCEEEEEEccCCCEEEEEeCCCcEEEEECc
Q 006825          410 GRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQ---AHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVV  486 (630)
Q Consensus       410 h~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~---gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~  486 (630)
                       ..    ...+ .-++.-..+|.++-|-+..+........+++.   .+...|.++.|+|.-++|+.||.-..      .
T Consensus       104 -~s----~~ws-~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~------~  171 (282)
T PF15492_consen  104 -KS----AQWS-YELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQN------Q  171 (282)
T ss_pred             -cc----cccc-eeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCC------C
Confidence             00    0011 12455556777777765433222233333332   35778999999999998888774332      0


Q ss_pred             CCceeeeeecccccCcccceE---EEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeCCCCceEEe
Q 006825          487 ESERKGELLEKQEDGHLNMLL---LANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSF  563 (630)
Q Consensus       487 tg~~~~~l~~~~~~gh~~~V~---svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL  563 (630)
                      ++..         .+....+.   -+.-.|-.+.+ +...+.....-.+                 ..+|.+....+...
T Consensus       172 ~~~s---------~a~~~GLtaWRiL~~~Pyyk~v-~~~~~~~~~~~~~-----------------~~~~~~~~~~~fs~  224 (282)
T PF15492_consen  172 DGMS---------KASSCGLTAWRILSDSPYYKQV-TSSEDDITASSKR-----------------RGLLRIPSFKFFSR  224 (282)
T ss_pred             Cccc---------cccccCceEEEEcCCCCcEEEc-cccCccccccccc-----------------cceeeccceeeeec
Confidence            0000         00011111   11112222111 1212221100000                 02232211111112


Q ss_pred             cc-CCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCCCcEEEEEe
Q 006825          564 QG-HLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS  605 (630)
Q Consensus       564 ~G-Hs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg~~l~t~~  605 (630)
                      ++ -.+.|..|..||| +.||+.+.+|.|.||++.+-++.+.++
T Consensus       225 ~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~  268 (282)
T PF15492_consen  225 QGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWK  268 (282)
T ss_pred             cccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccc
Confidence            22 4567999999999 999999999999999999988887775

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=97.78  E-value=0.015  Score=57.93  Aligned_cols=191  Identities=11%  Similarity=-0.008  Sum_probs=105.9

Q ss_pred             ecceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEe
Q 006825          348 RQNVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHG  427 (630)
Q Consensus       348 s~~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sg  427 (630)
                      ...+..++.++.+. .||..+|+.+.++..  ...+....                              ......++.+
T Consensus        36 ~~~v~~~~~~~~l~-~~d~~tG~~~W~~~~--~~~~~~~~------------------------------~~~~~~v~v~   82 (238)
T PF13360_consen   36 GGRVYVASGDGNLY-ALDAKTGKVLWRFDL--PGPISGAP------------------------------VVDGGRVYVG   82 (238)
T ss_dssp             TTEEEEEETTSEEE-EEETTTSEEEEEEEC--SSCGGSGE------------------------------EEETTEEEEE
T ss_pred             CCEEEEEcCCCEEE-EEECCCCCEEEEeec--ccccccee------------------------------eecccccccc
Confidence            34566778899999 999999998877662  11110000                              1112234455


Q ss_pred             cCCcEEEEEeCCCCcccceeeeeE-eccc---CcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccCc-
Q 006825          428 QERVRVRQYGKSCKDLTALYKCQE-IQAH---NGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGH-  502 (630)
Q Consensus       428 s~Dg~VriWd~~~~el~~~~~v~t-L~gH---t~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh-  502 (630)
                      ..++.|+.+|..+++.     +.. ....   ......+....++..++.+..++.|..+|+.+|+.+.........+- 
T Consensus        83 ~~~~~l~~~d~~tG~~-----~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~  157 (238)
T PF13360_consen   83 TSDGSLYALDAKTGKV-----LWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSS  157 (238)
T ss_dssp             ETTSEEEEEETTTSCE-----EEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS-
T ss_pred             cceeeeEecccCCcce-----eeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCc
Confidence            5677899999877764     222 1111   01122233333488888888899999999999998776532110000 


Q ss_pred             ----ccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeC-CCCceEEeccCCCCEEEEEEcC
Q 006825          503 ----LNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSWSK  577 (630)
Q Consensus       503 ----~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL~GHs~~V~sLafSP  577 (630)
                          ...+..-....++ .+..+..++.+.                      .+ ++ +++.+-...  ...+..+ ...
T Consensus       158 ~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~----------------------~~-d~~tg~~~w~~~--~~~~~~~-~~~  210 (238)
T PF13360_consen  158 PISSFSDINGSPVISDG-RVYVSSGDGRVV----------------------AV-DLATGEKLWSKP--ISGIYSL-PSV  210 (238)
T ss_dssp             -EEEETTEEEEEECCTT-EEEEECCTSSEE----------------------EE-ETTTTEEEEEEC--SS-ECEC-EEC
T ss_pred             ceeeecccccceEEECC-EEEEEcCCCeEE----------------------EE-ECCCCCEEEEec--CCCccCC-cee
Confidence                0111222222244 444444455320                      33 44 444332222  2223332 234


Q ss_pred             C-CeEEEEECCCcEEEEeCCCCcEEEE
Q 006825          578 S-QHLLSSSMDKTVRLWHLSSKTCLKI  603 (630)
Q Consensus       578 d-~~LaSgS~DgtVrIWDl~tg~~l~t  603 (630)
                      . +.|+.++.|+.|.+||+.+|+.+.+
T Consensus       211 ~~~~l~~~~~~~~l~~~d~~tG~~~W~  237 (238)
T PF13360_consen  211 DGGTLYVTSSDGRLYALDLKTGKVVWQ  237 (238)
T ss_dssp             CCTEEEEEETTTEEEEEETTTTEEEEE
T ss_pred             eCCEEEEEeCCCEEEEEECCCCCEEeE
Confidence            4 7888778999999999999998754

...

>PRK04043 tolB translocation protein TolB; Provisional

Probab=97.77  E-value=0.009  Score=66.30  Aligned_cols=199  Identities=9%  Similarity=-0.070  Sum_probs=110.3

Q ss_pred             cccCC-CCceeEEecCCccCCEEEEEEcCCCCe-EEeecCCCCCccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCC
Q 006825          363 NNGSS-GGGMKSKKKGSWFKSIRTVASSVTGHK-ERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSC  440 (630)
Q Consensus       363 vWD~~-tG~~~~~lk~gH~~~V~sVAfSpdG~~-lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~  440 (630)
                      ||-+. .|...+.+..+  +.+..-.|||||++ ++-.+.+                          .....|+++|..+
T Consensus       171 l~~~d~dg~~~~~~~~~--~~~~~p~wSpDG~~~i~y~s~~--------------------------~~~~~Iyv~dl~t  222 (419)
T PRK04043        171 IVLADYTLTYQKVIVKG--GLNIFPKWANKEQTAFYYTSYG--------------------------ERKPTLYKYNLYT  222 (419)
T ss_pred             EEEECCCCCceeEEccC--CCeEeEEECCCCCcEEEEEEcc--------------------------CCCCEEEEEECCC
Confidence            66432 24434434423  26778999999985 4322211                          0134689999887


Q ss_pred             CcccceeeeeEecccCcCEEEEEEccCCCEEE-EEeCC--CcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCE
Q 006825          441 KDLTALYKCQEIQAHNGSIWSIKFSLDGRYLA-SAGED--CVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTS  517 (630)
Q Consensus       441 ~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LA-SgS~D--gtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~  517 (630)
                      ++.      ..+....+.+....|+|||+.|+ +.+.+  ..|.++|+.++.. ..+     ..+........|+|||+.
T Consensus       223 g~~------~~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~-~~L-----T~~~~~d~~p~~SPDG~~  290 (419)
T PRK04043        223 GKK------EKIASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTL-TQI-----TNYPGIDVNGNFVEDDKR  290 (419)
T ss_pred             CcE------EEEecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcE-EEc-----ccCCCccCccEECCCCCE
Confidence            753      22333555667788999998665 44434  4577778877653 332     222222334579999988


Q ss_pred             EEEeeCC-CeeeeecccccccccccccCccccccEEEeCCCCceEEeccCCCCEEEEEEcCC-CeEEEEECC--------
Q 006825          518 LSPKHLD-NHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMD--------  587 (630)
Q Consensus       518 lasgs~D-g~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL~GHs~~V~sLafSPd-~~LaSgS~D--------  587 (630)
                      |+..+.. +.-.+                     .+.++.+.....+.-....  ...|+|+ ++|+-.+..        
T Consensus       291 I~F~Sdr~g~~~I---------------------y~~dl~~g~~~rlt~~g~~--~~~~SPDG~~Ia~~~~~~~~~~~~~  347 (419)
T PRK04043        291 IVFVSDRLGYPNI---------------------FMKKLNSGSVEQVVFHGKN--NSSVSTYKNYIVYSSRETNNEFGKN  347 (419)
T ss_pred             EEEEECCCCCceE---------------------EEEECCCCCeEeCccCCCc--CceECCCCCEEEEEEcCCCcccCCC
Confidence            8776543 21100                     3444433333222211111  2489999 777655543        


Q ss_pred             -CcEEEEeCCCCcEEEEEecCCceEEEE-cCCCcEEEEec
Q 006825          588 -KTVRLWHLSSKTCLKIFSHSDYDISLV-DRLMLRFAYGA  625 (630)
Q Consensus       588 -gtVrIWDl~tg~~l~t~~H~~~V~sVa-s~~~~~lAsgs  625 (630)
                       ..|.+.|+.++.. +.+.......... +|++..+++..
T Consensus       348 ~~~I~v~d~~~g~~-~~LT~~~~~~~p~~SPDG~~I~f~~  386 (419)
T PRK04043        348 TFNLYLISTNSDYI-RRLTANGVNQFPRFSSDGGSIMFIK  386 (419)
T ss_pred             CcEEEEEECCCCCe-EECCCCCCcCCeEECCCCCEEEEEE
Confidence             3677888888764 3343222222233 77777776653

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=97.75  E-value=0.027  Score=61.01  Aligned_cols=233  Identities=10%  Similarity=0.020  Sum_probs=133.1

Q ss_pred             CccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCcEEEEEe
Q 006825          358 SFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYG  437 (630)
Q Consensus       358 ~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd  437 (630)
                      +++- +-|..+++.+.++..|.....  + +||||+.+..+..                  +. ..+..|-.+..|.+||
T Consensus        27 ~~v~-ViD~~~~~v~g~i~~G~~P~~--~-~spDg~~lyva~~------------------~~-~R~~~G~~~d~V~v~D   83 (352)
T TIGR02658        27 TQVY-TIDGEAGRVLGMTDGGFLPNP--V-VASDGSFFAHAST------------------VY-SRIARGKRTDYVEVID   83 (352)
T ss_pred             ceEE-EEECCCCEEEEEEEccCCCce--e-ECCCCCEEEEEec------------------cc-cccccCCCCCEEEEEE
Confidence            5666 889999999998887766665  4 9999997753211                  00 1124455678899999


Q ss_pred             CCCCcccceeeeeEecc----c---CcCEEEEEEccCCCEEEEEe-C-CCcEEEEECcCCceeeeeecccccCcccceE-
Q 006825          438 KSCKDLTALYKCQEIQA----H---NGSIWSIKFSLDGRYLASAG-E-DCVIHVWQVVESERKGELLEKQEDGHLNMLL-  507 (630)
Q Consensus       438 ~~~~el~~~~~v~tL~g----H---t~~V~sVaFSpDG~~LASgS-~-DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~-  507 (630)
                      ..+.+.     +.++.-    +   -..-..++++|||++|+... . +..|-|.|+.+++.+.++..    +-...++ 
T Consensus        84 ~~t~~~-----~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~v----p~~~~vy~  154 (352)
T TIGR02658        84 PQTHLP-----IADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDV----PDCYHIFP  154 (352)
T ss_pred             CccCcE-----EeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeC----CCCcEEEE
Confidence            988764     333331    1   22345789999999998776 3 68999999999998887642    1111111 


Q ss_pred             -----EEEECCCCCEEEEee-CCCeeeeecccc--c----c-ccccccc-Cccccc----c--EEEeCCC------CceE
Q 006825          508 -----LANGSPEPTSLSPKH-LDNHLEKKRRGR--S----I-NRKSLSL-DHMVVP----E--TVFALSD------KPIC  561 (630)
Q Consensus       508 -----svafSpdg~~lasgs-~Dg~I~i~~~~~--~----~-~~~s~s~-d~~i~~----~--~Vwdlsg------k~l~  561 (630)
                           ....+.||.++.... .+++.......-  .    . ....+.. ++...+    .  .+.++.+      +.+.
T Consensus       155 t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~eG~V~~id~~~~~~~~~~~~~  234 (352)
T TIGR02658       155 TANDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYTGKIFQIDLSSGDAKFLPAIE  234 (352)
T ss_pred             ecCCccEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEecCCeEEEEecCCCcceecceee
Confidence                 223345555444222 222221111000  0    0 0000011 111100    0  2233211      1111


Q ss_pred             Eec------c-CCCCEEEEEEcCC-CeEEEEE----------CCCcEEEEeCCCCcEEEEEecCCceEEEE-cCCCc-EE
Q 006825          562 SFQ------G-HLDDVLDLSWSKS-QHLLSSS----------MDKTVRLWHLSSKTCLKIFSHSDYDISLV-DRLML-RF  621 (630)
Q Consensus       562 tL~------G-Hs~~V~sLafSPd-~~LaSgS----------~DgtVrIWDl~tg~~l~t~~H~~~V~sVa-s~~~~-~l  621 (630)
                      .+.      + ..+.+.-++++|+ ++|....          ..+.|-++|+.+++.+..+.-...++.|+ ++++. .+
T Consensus       235 ~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~~~~~iavS~Dgkp~l  314 (352)
T TIGR02658       235 AFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGHEIDSINVSQDAKPLL  314 (352)
T ss_pred             eccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCCCceeeEEECCCCCeEE
Confidence            111      0 2223344999998 6655532          12589999999999999998667888999 77777 44


Q ss_pred             E
Q 006825          622 A  622 (630)
Q Consensus       622 A  622 (630)
                      .
T Consensus       315 y  315 (352)
T TIGR02658       315 Y  315 (352)
T ss_pred             E
Confidence            3

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=97.75  E-value=0.00018  Score=74.64  Aligned_cols=217  Identities=18%  Similarity=0.211  Sum_probs=131.1

Q ss_pred             ccCCEEEEEEcCCCCeEEeecCCC-----CCcc-----------ccCCc---------------ceEEEeecCCCe-EEE
Q 006825          379 WFKSIRTVASSVTGHKERRSSDER-----DTSS-----------EKGGR---------------RSSSATDDSQDV-SFH  426 (630)
Q Consensus       379 H~~~V~sVAfSpdG~~lasgS~D~-----dt~s-----------~~gh~---------------~~Vsa~~~s~d~-l~S  426 (630)
                      -...|.+|-|...|.|+++|...+     +...           +.+|.               ..|......+-. ++-
T Consensus        25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl  104 (460)
T COG5170          25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL  104 (460)
T ss_pred             ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence            345688899999999999987554     0000           22221               122223333322 666


Q ss_pred             ecCCcEEEEEeCCCCccc-------------------------------c------eeeeeEe-cccCcCEEEEEEccCC
Q 006825          427 GQERVRVRQYGKSCKDLT-------------------------------A------LYKCQEI-QAHNGSIWSIKFSLDG  468 (630)
Q Consensus       427 gs~Dg~VriWd~~~~el~-------------------------------~------~~~v~tL-~gHt~~V~sVaFSpDG  468 (630)
                      ...|.+|++|.+-.+.+.                               .      .+..+.. .+|...|.+|.|+.|.
T Consensus       105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~  184 (460)
T COG5170         105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDK  184 (460)
T ss_pred             ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCch
Confidence            678999999987544110                               0      0111222 5788999999999999


Q ss_pred             CEEEEEeCCCcEEEEECcCCceeeeee-ccc--ccCcccceEEEEECCC-CCEEEEeeCCCeeeeecccccccccccccC
Q 006825          469 RYLASAGEDCVIHVWQVVESERKGELL-EKQ--EDGHLNMLLLANGSPE-PTSLSPKHLDNHLEKKRRGRSINRKSLSLD  544 (630)
Q Consensus       469 ~~LASgS~DgtIrVWDl~tg~~~~~l~-~~~--~~gh~~~V~svafSpd-g~~lasgs~Dg~I~i~~~~~~~~~~s~s~d  544 (630)
                      ..++|+ .|-.|.+|++.-......+. ..+  ...-...|++..|+|. ...+...+..|.|++.+..+...     .+
T Consensus       185 et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~al-----cd  258 (460)
T COG5170         185 ETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSAL-----CD  258 (460)
T ss_pred             heeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhh-----cc
Confidence            988875 57889999986543322222 111  1112345778899998 56677778889887665443110     00


Q ss_pred             ccccccEEEeC--CCCceEEeccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCC-CcEEEEEe
Q 006825          545 HMVVPETVFAL--SDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSS-KTCLKIFS  605 (630)
Q Consensus       545 ~~i~~~~Vwdl--sgk~l~tL~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~t-g~~l~t~~  605 (630)
                      ..   .+++..  .+--+--|.+-...|..+.|+++ .|+++-. =-+|+|||+.. ..|++++.
T Consensus       259 n~---~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRd-yltvkiwDvnm~k~pikTi~  319 (460)
T COG5170         259 NS---KKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRD-YLTVKIWDVNMAKNPIKTIP  319 (460)
T ss_pred             Cc---hhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEec-cceEEEEecccccCCceeec
Confidence            00   022222  12222224455667899999999 5666544 46999999985 56888885

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=97.69  E-value=0.0014  Score=67.06  Aligned_cols=169  Identities=15%  Similarity=0.019  Sum_probs=107.5

Q ss_pred             EEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccC-CCEEEEEeCCCcEEEEECcCCceeeeeecccccCc
Q 006825          424 SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLD-GRYLASAGEDCVIHVWQVVESERKGELLEKQEDGH  502 (630)
Q Consensus       424 l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpD-G~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh  502 (630)
                      ++.|+..|...+|...+++.    ..+.-..|...|.-+.=.-| .--+.-++.|.++|+.++.-+.....+.    ...
T Consensus        87 la~gG~~g~fd~~~~~tn~~----h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h----~~~  158 (344)
T KOG4532|consen   87 LADGGASGQFDLFACNTNDG----HLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVH----NQN  158 (344)
T ss_pred             EEeccccceeeeecccCccc----ceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceee----ccc
Confidence            78888999999999887753    12222334332221111112 1236668999999999997655443331    111


Q ss_pred             ccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeC--CC-CceEEe-ccCCCCEEEEEEcCC
Q 006825          503 LNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL--SD-KPICSF-QGHLDDVLDLSWSKS  578 (630)
Q Consensus       503 ~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl--sg-k~l~tL-~GHs~~V~sLafSPd  578 (630)
                       -.+..+.+++|++++++.++...|                       ..+.+  .+ ..+.+. ..-++.=.+..|+..
T Consensus       159 -~~~ns~~~snd~~~~~~Vgds~~V-----------------------f~y~id~~sey~~~~~~a~t~D~gF~~S~s~~  214 (344)
T KOG4532|consen  159 -LTQNSLHYSNDPSWGSSVGDSRRV-----------------------FRYAIDDESEYIENIYEAPTSDHGFYNSFSEN  214 (344)
T ss_pred             -cceeeeEEcCCCceEEEecCCCcc-----------------------eEEEeCCccceeeeeEecccCCCceeeeeccC
Confidence             227789999999999998777766                       34444  22 233322 223344467889887


Q ss_pred             -CeEEEEECCCcEEEEeCCCC-cEEEEEe-----cCCceEEEE----cCCCcEEEEe
Q 006825          579 -QHLLSSSMDKTVRLWHLSSK-TCLKIFS-----HSDYDISLV----DRLMLRFAYG  624 (630)
Q Consensus       579 -~~LaSgS~DgtVrIWDl~tg-~~l~t~~-----H~~~V~sVa----s~~~~~lAsg  624 (630)
                       ..+|++..||++.|||++.. .+..+..     |.+.|..+.    .+..+.+.+-
T Consensus       215 ~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sE  271 (344)
T KOG4532|consen  215 DLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISE  271 (344)
T ss_pred             cceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEec
Confidence             89999999999999999874 3333332     889998887    3444445443

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=97.69  E-value=0.003  Score=64.80  Aligned_cols=193  Identities=10%  Similarity=0.010  Sum_probs=125.1

Q ss_pred             ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecC
Q 006825          350 NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQE  429 (630)
Q Consensus       350 ~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~  429 (630)
                      +||.|+.-+... +|..+|.+....+-.-|...|.                            .+.-..+....+.-++.
T Consensus        86 ~la~gG~~g~fd-~~~~~tn~~h~~~cd~snn~v~----------------------------~~~r~cd~~~~~~i~sn  136 (344)
T KOG4532|consen   86 TLADGGASGQFD-LFACNTNDGHLYQCDVSNNDVT----------------------------LVKRYCDLKFPLNIASN  136 (344)
T ss_pred             EEEeccccceee-eecccCcccceeeecccccchh----------------------------hhhhhcccccceeeccC
Confidence            688888888888 8988765433222212222221                            11122233333566677


Q ss_pred             CcEEEEEeCCCCcccceeeeeEecccCcC--EEEEEEccCCCEEEEEeCCCcEEEEECcCCce-eeeeecccccCcccce
Q 006825          430 RVRVRQYGKSCKDLTALYKCQEIQAHNGS--IWSIKFSLDGRYLASAGEDCVIHVWQVVESER-KGELLEKQEDGHLNML  506 (630)
Q Consensus       430 Dg~VriWd~~~~el~~~~~v~tL~gHt~~--V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~-~~~l~~~~~~gh~~~V  506 (630)
                      |.+++++++..+-..       +.-|...  +..+++++|++++++.+.-..|-.|.+..... +..+.   .......-
T Consensus       137 dht~k~~~~~~~s~~-------~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~---~a~t~D~g  206 (344)
T KOG4532|consen  137 DHTGKTMVVSGDSNK-------FAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIY---EAPTSDHG  206 (344)
T ss_pred             CcceeEEEEecCccc-------ceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeE---ecccCCCc
Confidence            777888877655322       1224333  88999999999999999999999999865332 21111   23334555


Q ss_pred             EEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeC--CCCceEE----eccCCCCEEEEEEcCC--
Q 006825          507 LLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL--SDKPICS----FQGHLDDVLDLSWSKS--  578 (630)
Q Consensus       507 ~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl--sgk~l~t----L~GHs~~V~sLafSPd--  578 (630)
                      ++..|+.....+|++..|+++                       .|||+  .+.+..+    -..|.+.|..+.|++-  
T Consensus       207 F~~S~s~~~~~FAv~~Qdg~~-----------------------~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~  263 (344)
T KOG4532|consen  207 FYNSFSENDLQFAVVFQDGTC-----------------------AIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGL  263 (344)
T ss_pred             eeeeeccCcceEEEEecCCcE-----------------------EEEEecccccchhhhcccCCCCCCceEEEEecCCCc
Confidence            788899999999999999999                       66665  2222222    2358999999999964  


Q ss_pred             -CeEEEEECCCcEEEEeCCCCcEEEEE
Q 006825          579 -QHLLSSSMDKTVRLWHLSSKTCLKIF  604 (630)
Q Consensus       579 -~~LaSgS~DgtVrIWDl~tg~~l~t~  604 (630)
                       .+|.-.=.=+.+.+-|+++++-.+.+
T Consensus       264 lDLLf~sEhfs~~hv~D~R~~~~~q~I  290 (344)
T KOG4532|consen  264 LDLLFISEHFSRVHVVDTRNYVNHQVI  290 (344)
T ss_pred             ceEEEEecCcceEEEEEcccCceeeEE
Confidence             55555555678999999998654443

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=97.69  E-value=0.0048  Score=67.99  Aligned_cols=215  Identities=10%  Similarity=0.033  Sum_probs=122.1

Q ss_pred             ccEecccCCCCceeEEecCCccCC--EE-EEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCcEEEE
Q 006825          359 FDLNNNGSSGGGMKSKKKGSWFKS--IR-TVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQ  435 (630)
Q Consensus       359 tvr~vWD~~tG~~~~~lk~gH~~~--V~-sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~Vri  435 (630)
                      .+. +||.++|..+..+. +-...  .. -+.|+-+.+|.|.-.                              ...+.+
T Consensus       109 ~~~-vwd~~sg~iv~sf~-~~~q~~~~Wp~~k~s~~D~y~ARvv------------------------------~~sl~i  156 (561)
T COG5354         109 NVF-VWDIASGMIVFSFN-GISQPYLGWPVLKFSIDDKYVARVV------------------------------GSSLYI  156 (561)
T ss_pred             cee-EEeccCceeEeecc-ccCCcccccceeeeeecchhhhhhc------------------------------cCeEEE
Confidence            577 99999999999887 44433  22 367777766655321                              113677


Q ss_pred             EeCCCCcccceeeeeEecccCcCEEEEEEccCC--CEEEE-----EeCCCcEEEEECcCCceeeeeecccccCcccceEE
Q 006825          436 YGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDG--RYLAS-----AGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLL  508 (630)
Q Consensus       436 Wd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG--~~LAS-----gS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~s  508 (630)
                      +++ ++.+... ..+.|+  ...|....|+|.|  ..||.     .+.+++++||.+..+..+.+..   +  ....-..
T Consensus       157 ~e~-t~n~~~~-p~~~lr--~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~---l--fk~~~~q  227 (561)
T COG5354         157 HEI-TDNIEEH-PFKNLR--PVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKN---L--FKVSGVQ  227 (561)
T ss_pred             Eec-CCccccC-chhhcc--ccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeee---e--EeecccE
Confidence            775 3332211 112222  3567888889853  34444     5788999999997555443311   0  0011125


Q ss_pred             EEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeCCCCceEEeccCCCCEEEEEEcCC-CeEE--EEE
Q 006825          509 ANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLL--SSS  585 (630)
Q Consensus       509 vafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL~GHs~~V~sLafSPd-~~La--SgS  585 (630)
                      +.|.+.|.+++.-..-.+ +   .++     +.=...   .-.++.+++.-+....+-.++|...+|.|. ..++  +|-
T Consensus       228 LkW~~~g~~ll~l~~t~~-k---snK-----syfges---nLyl~~~~e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~  295 (561)
T COG5354         228 LKWQVLGKYLLVLVMTHT-K---SNK-----SYFGES---NLYLLRITERSIPVEKDLKDPVHDFTWEPLSSRFAVISGY  295 (561)
T ss_pred             EEEecCCceEEEEEEEee-e---ccc-----ceeccc---eEEEEeecccccceeccccccceeeeecccCCceeEEecc
Confidence            677888887765421111 0   000     000000   116677777777766677899999999998 5544  556


Q ss_pred             CCCcEEEEeCCCCcEEEEEecCCceEEEEcCCCcEEEEecce
Q 006825          586 MDKTVRLWHLSSKTCLKIFSHSDYDISLVDRLMLRFAYGAFL  627 (630)
Q Consensus       586 ~DgtVrIWDl~tg~~l~t~~H~~~V~sVas~~~~~lAsgs~~  627 (630)
                      ++-++-++|++.. ....+.....-+-+-+|...++..+++.
T Consensus       296 ~pa~~s~~~lr~N-l~~~~Pe~~rNT~~fsp~~r~il~agF~  336 (561)
T COG5354         296 MPASVSVFDLRGN-LRFYFPEQKRNTIFFSPHERYILFAGFD  336 (561)
T ss_pred             cccceeecccccc-eEEecCCcccccccccCcccEEEEecCC
Confidence            8999999999866 3333332222222225555555554443

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.60  E-value=0.0007  Score=77.74  Aligned_cols=151  Identities=13%  Similarity=0.157  Sum_probs=108.4

Q ss_pred             eEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceee
Q 006825          413 SSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKG  492 (630)
Q Consensus       413 ~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~  492 (630)
                      .++|.+++...++-|+.+|.|++++....-       .+..-|...      ..+|.+++|||.||+|.|-.+-+.+...
T Consensus        41 ~is~~av~~~~~~~GtH~g~v~~~~~~~~~-------~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~  107 (846)
T KOG2066|consen   41 AISCCAVHDKFFALGTHRGAVYLTTCQGNP-------KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEIT  107 (846)
T ss_pred             HHHHHHhhcceeeeccccceEEEEecCCcc-------ccccccccc------ccCCceEEEecCCCcEEEeeccCCccce
Confidence            455666676778889999999999875431       223345444      6689999999999999999998877665


Q ss_pred             eeecccccCcccceEEEEECCC-----CCEEEEeeCCCeeeeecccccccccccccCccccccEEEeCCCCceEEeccCC
Q 006825          493 ELLEKQEDGHLNMLLLANGSPE-----PTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHL  567 (630)
Q Consensus       493 ~l~~~~~~gh~~~V~svafSpd-----g~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL~GHs  567 (630)
                      ++      .-..++.+|+++|+     .+.+++|+..| +.+..+                   -|--....+ .+..-.
T Consensus       108 ~~------df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er-------------------~wlgnk~~v-~l~~~e  160 (846)
T KOG2066|consen  108 QY------DFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSER-------------------NWLGNKDSV-VLSEGE  160 (846)
T ss_pred             eE------ecCCcceeEEeccchhhhhhhheeecCcce-EEEehh-------------------hhhcCccce-eeecCc
Confidence            53      33467889999998     56788887777 422222                   121111122 455566


Q ss_pred             CCEEEEEEcCCCeEEEEECCCcEEEEeCCCCcEEEEEe
Q 006825          568 DDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFS  605 (630)
Q Consensus       568 ~~V~sLafSPd~~LaSgS~DgtVrIWDl~tg~~l~t~~  605 (630)
                      +.|.++.|.. .++|=++.+| |+++|+.+++.+..++
T Consensus       161 G~I~~i~W~g-~lIAWand~G-v~vyd~~~~~~l~~i~  196 (846)
T KOG2066|consen  161 GPIHSIKWRG-NLIAWANDDG-VKVYDTPTRQRLTNIP  196 (846)
T ss_pred             cceEEEEecC-cEEEEecCCC-cEEEeccccceeeccC
Confidence            8899999976 5777777666 8999999999888776

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=97.56  E-value=0.034  Score=60.16  Aligned_cols=133  Identities=11%  Similarity=-0.017  Sum_probs=83.8

Q ss_pred             CeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccC
Q 006825          422 DVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDG  501 (630)
Q Consensus       422 d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~g  501 (630)
                      ..++.+..++.++.||..+++.     +.... . .......  .++..|+.++.||.|..+|..+++.+.....  ..+
T Consensus       242 ~~vy~~~~~g~l~a~d~~tG~~-----~W~~~-~-~~~~~p~--~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~--~~~  310 (377)
T TIGR03300       242 GQVYAVSYQGRVAALDLRSGRV-----LWKRD-A-SSYQGPA--VDDNRLYVTDADGVVVALDRRSGSELWKNDE--LKY  310 (377)
T ss_pred             CEEEEEEcCCEEEEEECCCCcE-----EEeec-c-CCccCce--EeCCEEEEECCCCeEEEEECCCCcEEEcccc--ccC
Confidence            3477788899999999987753     12221 1 1111222  2566788888999999999999986654310  011


Q ss_pred             cccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeC-CCCceEEeccCCCCEEE-EEEcCCC
Q 006825          502 HLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLD-LSWSKSQ  579 (630)
Q Consensus       502 h~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL~GHs~~V~s-LafSPd~  579 (630)
                      .  .......  .+..++.+..++.+                       .+++. +|+.+.++..+...+.. .++. ++
T Consensus       311 ~--~~ssp~i--~g~~l~~~~~~G~l-----------------------~~~d~~tG~~~~~~~~~~~~~~~sp~~~-~~  362 (377)
T TIGR03300       311 R--QLTAPAV--VGGYLVVGDFEGYL-----------------------HWLSREDGSFVARLKTDGSGIASPPVVV-GD  362 (377)
T ss_pred             C--ccccCEE--ECCEEEEEeCCCEE-----------------------EEEECCCCCEEEEEEcCCCccccCCEEE-CC
Confidence            1  1111111  25577778888888                       66776 68888888766644322 2232 36


Q ss_pred             eEEEEECCCcEEEE
Q 006825          580 HLLSSSMDKTVRLW  593 (630)
Q Consensus       580 ~LaSgS~DgtVrIW  593 (630)
                      .|+.++.||.|..|
T Consensus       363 ~l~v~~~dG~l~~~  376 (377)
T TIGR03300       363 GLLVQTRDGDLYAF  376 (377)
T ss_pred             EEEEEeCCceEEEe
Confidence            78899999999865

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=97.55  E-value=0.038  Score=67.19  Aligned_cols=275  Identities=13%  Similarity=0.069  Sum_probs=141.0

Q ss_pred             ccccEEEEECCCCcEEEEeeecCCCceeEEEEcC-CCceEeeeccee--eecCccceeEEEeec---ceEeecCCCccEe
Q 006825          289 AEQGCLIKNLDNGKEFVVNEIQEDGTWKKVKEVG-TGRQLTIEEFEM--CVGHSPIVQELMRRQ---NVEEGNKDSFDLN  362 (630)
Q Consensus       289 ~~~~~~I~~LddG~~~~v~e~~~dg~~~~l~dv~-TG~~lt~eef~~--l~GHs~~V~~Lafs~---~laSgS~D~tvr~  362 (630)
                      ......+++.+....+++...........+.... .+..-.+..+..  .....+.|..+.+.+   .++-+..+|-|. 
T Consensus        22 ~~~~~~~~d~~sd~i~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~~~~~~~~~~ivs~~yl~d~~~l~~~~~~Gdi~-  100 (928)
T PF04762_consen   22 LPITATAFDSDSDSIYFVLGPNEIDYVIELDRFSQDGSVEVLASWDAPLPDDPNDKIVSFQYLADSESLCIALASGDII-  100 (928)
T ss_pred             cccceEEEecCCCeEEEEECCCCcceEEEEEeeccCCceeEEEeccccCCcCCCCcEEEEEeccCCCcEEEEECCceEE-
Confidence            3445566777777776664432211112222222 221111111110  012335667777766   455555566666 


Q ss_pred             cc--cCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEE-----EeecCCCeEEEecCCcEEEE
Q 006825          363 NN--GSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSS-----ATDDSQDVSFHGQERVRVRQ  435 (630)
Q Consensus       363 vW--D~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vs-----a~~~s~d~l~Sgs~Dg~Vri  435 (630)
                      +.  |...+......-+.-...|.+++||||+..++-...++........--.+.     .-.+...-.++.+       
T Consensus       101 ~~~~~~~~~~~~~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVG-------  173 (928)
T PF04762_consen  101 LVREDPDPDEDEIEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVG-------  173 (928)
T ss_pred             EEEccCCCCCceeEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeec-------
Confidence            44  222222222223234468999999999998776554431000000000011     1111111112222       


Q ss_pred             EeCCCCcccce------------e----eeeEecccCcCEEEEEEccCCCEEEEEeC---C---CcEEEEECcCCceeee
Q 006825          436 YGKSCKDLTAL------------Y----KCQEIQAHNGSIWSIKFSLDGRYLASAGE---D---CVIHVWQVVESERKGE  493 (630)
Q Consensus       436 Wd~~~~el~~~------------~----~v~tL~gHt~~V~sVaFSpDG~~LASgS~---D---gtIrVWDl~tg~~~~~  493 (630)
                      |.++.-++.+-            .    -...+. +...-..|+|-.||.|+|..+.   .   +.||||+-+ |.....
T Consensus       174 WGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~st  251 (928)
T PF04762_consen  174 WGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQST  251 (928)
T ss_pred             cCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEec
Confidence            33321111000            0    011233 5556678999999999999874   2   579999975 443322


Q ss_pred             eecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeCCCCceEEec----cCCCC
Q 006825          494 LLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQ----GHLDD  569 (630)
Q Consensus       494 l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL~----GHs~~  569 (630)
                           .....+--..++|-|.|.+||+.-.-..-                 ..+   .+|.-.|-....|.    .....
T Consensus       252 -----SE~v~gLe~~l~WrPsG~lIA~~q~~~~~-----------------~~V---vFfErNGLrhgeF~l~~~~~~~~  306 (928)
T PF04762_consen  252 -----SEPVDGLEGALSWRPSGNLIASSQRLPDR-----------------HDV---VFFERNGLRHGEFTLRFDPEEEK  306 (928)
T ss_pred             -----cccCCCccCCccCCCCCCEEEEEEEcCCC-----------------cEE---EEEecCCcEeeeEecCCCCCCce
Confidence                 12222334478999999999987431100                 001   44555665555443    34567


Q ss_pred             EEEEEEcCC-CeEEEEECCCcEEEEeCCCCc
Q 006825          570 VLDLSWSKS-QHLLSSSMDKTVRLWHLSSKT  599 (630)
Q Consensus       570 V~sLafSPd-~~LaSgS~DgtVrIWDl~tg~  599 (630)
                      |..|+|+++ ..||.--.|. |.||-+.+..
T Consensus       307 v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYH  336 (928)
T PF04762_consen  307 VIELAWNSDSEILAVWLEDR-VQLWTRSNYH  336 (928)
T ss_pred             eeEEEECCCCCEEEEEecCC-ceEEEeeCCE
Confidence            999999999 7777766555 9999887654

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=97.49  E-value=0.00034  Score=71.24  Aligned_cols=60  Identities=18%  Similarity=0.354  Sum_probs=52.7

Q ss_pred             EEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEcc-CCCEEEEEeCCCcEEEEECcC
Q 006825          424 SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSL-DGRYLASAGEDCVIHVWQVVE  487 (630)
Q Consensus       424 l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSp-DG~~LASgS~DgtIrVWDl~t  487 (630)
                      ++.|++||.+-+||+.....    .+..|++|+.+|+-|-|+| ++..|+++++||.+.-||..+
T Consensus       195 v~cgt~dg~~~l~d~rn~~~----p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~  255 (319)
T KOG4714|consen  195 VCCGTDDGIVGLWDARNVAM----PVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST  255 (319)
T ss_pred             EEEecCCCeEEEEEcccccc----hHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence            68889999999999976632    4566899999999999999 788999999999999999874

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=97.48  E-value=0.21  Score=53.31  Aligned_cols=270  Identities=14%  Similarity=0.091  Sum_probs=139.2

Q ss_pred             ccccccEEEEECCCCcEEEEeeecCCCc-eeEEEEcCCCceEeeecceeeecCccceeEEEeec---ceEeecCC-CccE
Q 006825          287 GVAEQGCLIKNLDNGKEFVVNEIQEDGT-WKKVKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQ---NVEEGNKD-SFDL  361 (630)
Q Consensus       287 ~~~~~~~~I~~LddG~~~~v~e~~~dg~-~~~l~dv~TG~~lt~eef~~l~GHs~~V~~Lafs~---~laSgS~D-~tvr  361 (630)
                      +..+.+...++.+....|.+++.+.+|. ...-+|...|+.--+.+ ..+.|+.+  .-+++.+   +|+++..- +.|.
T Consensus        38 ~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~-~~~~g~~p--~yvsvd~~g~~vf~AnY~~g~v~  114 (346)
T COG2706          38 ELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNR-QTLPGSPP--CYVSVDEDGRFVFVANYHSGSVS  114 (346)
T ss_pred             ccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeec-cccCCCCC--eEEEECCCCCEEEEEEccCceEE
Confidence            3455566666665556666666655544 33344545565442222 34445544  4455544   45444443 2333


Q ss_pred             ecccCCC-CceeEEe-cCCccCC----------EEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecC
Q 006825          362 NNNGSSG-GGMKSKK-KGSWFKS----------IRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQE  429 (630)
Q Consensus       362 ~vWD~~t-G~~~~~l-k~gH~~~----------V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~  429 (630)
                       +.-+.. |...... ...|...          +-.+-|.|+|+++.+                            .--.
T Consensus       115 -v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v----------------------------~DLG  165 (346)
T COG2706         115 -VYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVV----------------------------PDLG  165 (346)
T ss_pred             -EEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEE----------------------------eecC
Confidence             443322 2211100 0012222          333444555544432                            2223


Q ss_pred             CcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEe-CCCcEEEEECcCC-ceeeee---eccc-ccCcc
Q 006825          430 RVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAG-EDCVIHVWQVVES-ERKGEL---LEKQ-EDGHL  503 (630)
Q Consensus       430 Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS-~DgtIrVWDl~tg-~~~~~l---~~~~-~~gh~  503 (630)
                      .-+|.+|++..+.+..... ..+ .-...-.-|.|+|++++..... .+++|-+|..... ....++   ...+ .-.-.
T Consensus       166 ~Dri~~y~~~dg~L~~~~~-~~v-~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~  243 (346)
T COG2706         166 TDRIFLYDLDDGKLTPADP-AEV-KPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGT  243 (346)
T ss_pred             CceEEEEEcccCccccccc-ccc-CCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCC
Confidence            3468888887665543322 122 2233457899999999876655 6899999998763 222221   1000 01123


Q ss_pred             cceEEEEECCCCCEEEEeeCCC-eeeeecccccccccccccCccccccEEEeC--CCCceEEe---ccCCCCEEEEEEcC
Q 006825          504 NMLLLANGSPEPTSLSPKHLDN-HLEKKRRGRSINRKSLSLDHMVVPETVFAL--SDKPICSF---QGHLDDVLDLSWSK  577 (630)
Q Consensus       504 ~~V~svafSpdg~~lasgs~Dg-~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl--sgk~l~tL---~GHs~~V~sLafSP  577 (630)
                      .....|.+++||++|.++-..- .|                       .+|.+  .+..+..+   ..+...-....|++
T Consensus       244 ~~~aaIhis~dGrFLYasNRg~dsI-----------------------~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~  300 (346)
T COG2706         244 NWAAAIHISPDGRFLYASNRGHDSI-----------------------AVFSVDPDGGKLELVGITPTEGQFPRDFNINP  300 (346)
T ss_pred             CceeEEEECCCCCEEEEecCCCCeE-----------------------EEEEEcCCCCEEEEEEEeccCCcCCccceeCC
Confidence            4566888999999998763322 22                       34444  22222221   22333457788999


Q ss_pred             C-CeEEEEECC-CcEEEEeCC--CCcEEEEEe--cCCceEEE
Q 006825          578 S-QHLLSSSMD-KTVRLWHLS--SKTCLKIFS--HSDYDISL  613 (630)
Q Consensus       578 d-~~LaSgS~D-gtVrIWDl~--tg~~l~t~~--H~~~V~sV  613 (630)
                      . .+|+.+..| .+|.++...  +|++.....  +.....||
T Consensus       301 ~g~~Liaa~q~sd~i~vf~~d~~TG~L~~~~~~~~~p~Pvcv  342 (346)
T COG2706         301 SGRFLIAANQKSDNITVFERDKETGRLTLLGRYAVVPEPVCV  342 (346)
T ss_pred             CCCEEEEEccCCCcEEEEEEcCCCceEEecccccCCCCcEEE
Confidence            8 888777764 568888654  565544333  44444444

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=97.45  E-value=0.00075  Score=68.83  Aligned_cols=144  Identities=15%  Similarity=0.193  Sum_probs=90.4

Q ss_pred             CeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeC-----CCcEEEEECcCCceeeeeec
Q 006825          422 DVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGE-----DCVIHVWQVVESERKGELLE  496 (630)
Q Consensus       422 d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~-----DgtIrVWDl~tg~~~~~l~~  496 (630)
                      ..++.+..|+.+-+++... .+.   ..+.+..-...-.+.++-..+++|.+++.     -+..++|++..   +..++.
T Consensus       102 t~V~~~~~dg~~~v~s~~~-~~~---~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p---~~t~~~  174 (319)
T KOG4714|consen  102 NRVCIGYADGSLAVFSTDK-DLA---LMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDP---IKTLIP  174 (319)
T ss_pred             CceEecCCCceEEEEechH-HHh---hhhhcccccccccccceeecccEEecCCcceEeeccceeeecccc---cccccc
Confidence            4478888999999988753 221   11112211222233444445666655431     12344555532   223221


Q ss_pred             ccccCcccceEEEEECCC-CCEEEEeeCCCeeeeecccccccccccccCccccccEEEeC--CCCceEEeccCCCCEEEE
Q 006825          497 KQEDGHLNMLLLANGSPE-PTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL--SDKPICSFQGHLDDVLDL  573 (630)
Q Consensus       497 ~~~~gh~~~V~svafSpd-g~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl--sgk~l~tL~GHs~~V~sL  573 (630)
                      .  ......|.+++-+|. ..++++|+.||.+                       .+|+.  -..++..|+.|..+|+.+
T Consensus       175 ~--~~~~~~v~~l~~hp~qq~~v~cgt~dg~~-----------------------~l~d~rn~~~p~S~l~ahk~~i~eV  229 (319)
T KOG4714|consen  175 S--KKALDAVTALCSHPAQQHLVCCGTDDGIV-----------------------GLWDARNVAMPVSLLKAHKAEIWEV  229 (319)
T ss_pred             c--ccccccchhhhCCcccccEEEEecCCCeE-----------------------EEEEcccccchHHHHHHhhhhhhhe
Confidence            1  111234888899997 4556667788888                       66665  235666788999999999


Q ss_pred             EEcCC--CeEEEEECCCcEEEEeCCC
Q 006825          574 SWSKS--QHLLSSSMDKTVRLWHLSS  597 (630)
Q Consensus       574 afSPd--~~LaSgS~DgtVrIWDl~t  597 (630)
                      -|+|.  ..|++++.||.+-.||..+
T Consensus       230 ~FHpk~p~~Lft~sedGslw~wdas~  255 (319)
T KOG4714|consen  230 HFHPKNPEHLFTCSEDGSLWHWDAST  255 (319)
T ss_pred             eccCCCchheeEecCCCcEEEEcCCC
Confidence            99997  8999999999999999875

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=97.43  E-value=0.015  Score=63.65  Aligned_cols=140  Identities=10%  Similarity=0.086  Sum_probs=104.0

Q ss_pred             CCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCC-cEEEEECcCCceeeeeecccccCcccceE
Q 006825          429 ERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDC-VIHVWQVVESERKGELLEKQEDGHLNMLL  507 (630)
Q Consensus       429 ~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~Dg-tIrVWDl~tg~~~~~l~~~~~~gh~~~V~  507 (630)
                      ..|++.+++...+-     .+  --+|.+.|.-..+.-+++-++.|-.|| .|-|+|..+++..+.      ....+.|.
T Consensus       339 SRGkaFi~~~~~~~-----~i--qv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~------e~~lg~I~  405 (668)
T COG4946         339 SRGKAFIMRPWDGY-----SI--QVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRI------EKDLGNIE  405 (668)
T ss_pred             ecCcEEEECCCCCe-----eE--EcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEe------eCCccceE
Confidence            45666666543321     12  236888899999999999999999999 899999998875544      55668899


Q ss_pred             EEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeC-CCCceEEeccCCCCEEEEEEcCC-CeEEEEE
Q 006825          508 LANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSWSKS-QHLLSSS  585 (630)
Q Consensus       508 svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL~GHs~~V~sLafSPd-~~LaSgS  585 (630)
                      ++..+++|+.++.+-....+                       .+.++ +|.....-+...+-|+..+|||+ .++|-+-
T Consensus       406 av~vs~dGK~~vvaNdr~el-----------------------~vididngnv~~idkS~~~lItdf~~~~nsr~iAYaf  462 (668)
T COG4946         406 AVKVSPDGKKVVVANDRFEL-----------------------WVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAF  462 (668)
T ss_pred             EEEEcCCCcEEEEEcCceEE-----------------------EEEEecCCCeeEecccccceeEEEEEcCCceeEEEec
Confidence            99999999999888555554                       44555 45444333455677999999999 8888776


Q ss_pred             CCC----cEEEEeCCCCcEEEEE
Q 006825          586 MDK----TVRLWHLSSKTCLKIF  604 (630)
Q Consensus       586 ~Dg----tVrIWDl~tg~~l~t~  604 (630)
                      -+|    .|+|+|+..++....-
T Consensus       463 P~gy~tq~Iklydm~~~Kiy~vT  485 (668)
T COG4946         463 PEGYYTQSIKLYDMDGGKIYDVT  485 (668)
T ss_pred             CcceeeeeEEEEecCCCeEEEec
Confidence            655    7899999988765543

>smart00320 WD40 WD40 repeats

Probab=97.41  E-value=0.00038  Score=46.66  Aligned_cols=37  Identities=41%  Similarity=0.789  Sum_probs=33.8

Q ss_pred             eeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEE
Q 006825          448 KCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQ  484 (630)
Q Consensus       448 ~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWD  484 (630)
                      +...+.+|...|+++.|++.+.++++++.|+.|++|+
T Consensus         4 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        4 LLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            4567788999999999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.40  E-value=0.0028  Score=68.09  Aligned_cols=228  Identities=11%  Similarity=0.065  Sum_probs=133.6

Q ss_pred             ceeeecCccceeEEEeec----ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccc
Q 006825          332 FEMCVGHSPIVQELMRRQ----NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSE  407 (630)
Q Consensus       332 f~~l~GHs~~V~~Lafs~----~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~  407 (630)
                      .+-+.+|...|+.|+|+|    .+..+|.+.+++ |-|+.+-....... .| +.|.+++|..|..              
T Consensus       186 sq~lp~~g~~IrdlafSp~~~GLl~~asl~nkik-i~dlet~~~vssy~-a~-~~~wSC~wDlde~--------------  248 (463)
T KOG1645|consen  186 SQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIK-IMDLETSCVVSSYI-AY-NQIWSCCWDLDER--------------  248 (463)
T ss_pred             hhcccccchhhhhhccCccccceeeeeccCceEE-EEecccceeeehee-cc-CCceeeeeccCCc--------------
Confidence            367889999999999999    578999999999 99999988888887 55 8899999987632              


Q ss_pred             cCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecc--cCcCEEEEE------EccCCCEEEEEeCCCc
Q 006825          408 KGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQA--HNGSIWSIK------FSLDGRYLASAGEDCV  479 (630)
Q Consensus       408 ~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~g--Ht~~V~sVa------FSpDG~~LASgS~Dgt  479 (630)
                                    ..++.|-..|.|.+||+...+-.    ++++.+  -..+|..|+      ..+-|.+|+-.+.+  
T Consensus       249 --------------h~IYaGl~nG~VlvyD~R~~~~~----~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--  308 (463)
T KOG1645|consen  249 --------------HVIYAGLQNGMVLVYDMRQPEGP----LMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--  308 (463)
T ss_pred             --------------ceeEEeccCceEEEEEccCCCch----HhhhhhhhccCcceeecccCccccccccceEEeeehh--
Confidence                          34789999999999999866532    222322  122343333      33445555555543  


Q ss_pred             EEEEECcCCce--eeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeCCC
Q 006825          480 IHVWQVVESER--KGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSD  557 (630)
Q Consensus       480 IrVWDl~tg~~--~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsg  557 (630)
                      +..|++.-...  ...+    ..+..+.+.+.++++-...++......      .......       .+.. ++-..+|
T Consensus       309 l~f~ei~~s~~~~p~vl----ele~pG~cismqy~~~snh~l~tyRs~------pn~p~~r-------~il~-~~d~~dG  370 (463)
T KOG1645|consen  309 LQFYEIVFSAECLPCVL----ELEPPGICISMQYHGVSNHLLLTYRSN------PNFPQSR-------FILG-RIDFRDG  370 (463)
T ss_pred             hhhhhhhccccCCCccc----ccCCCcceeeeeecCccceEEEEecCC------CCCccce-------eeee-eeccccC
Confidence            55676532211  1111    123334555666666444443332211      0000000       0000 1112233


Q ss_pred             CceEEe-ccCCC----CE--EEEEE-cCC-CeEE-EEECCCcEEEEeCCCCcEEEEEecCCceEEEE
Q 006825          558 KPICSF-QGHLD----DV--LDLSW-SKS-QHLL-SSSMDKTVRLWHLSSKTCLKIFSHSDYDISLV  614 (630)
Q Consensus       558 k~l~tL-~GHs~----~V--~sLaf-SPd-~~La-SgS~DgtVrIWDl~tg~~l~t~~H~~~V~sVa  614 (630)
                      .+++.- .+|.+    .+  +...+ .++ ++++ .+..-+++.|||+.+.+.++++.-..+|..+.
T Consensus       371 ~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~~s~evvQ~l~~~epv~Dic  437 (463)
T KOG1645|consen  371 FPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQDPHSFEVVQTLALSEPVLDIC  437 (463)
T ss_pred             ceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEEeccchhheeeecccCcceeecc
Confidence            332221 11210    00  11122 234 4444 66667899999999999999999778888887

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=97.37  E-value=0.036  Score=59.01  Aligned_cols=212  Identities=12%  Similarity=0.055  Sum_probs=121.5

Q ss_pred             CCccEecccCC--CCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCcEEE
Q 006825          357 DSFDLNNNGSS--GGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVR  434 (630)
Q Consensus       357 D~tvr~vWD~~--tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~Vr  434 (630)
                      .+.|. +|++.  +|+.....+..+.....=++|+|++++|-++..+.                          .++.|-
T Consensus        15 s~gI~-v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~--------------------------~~ggva   67 (346)
T COG2706          15 SQGIY-VFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPG--------------------------EEGGVA   67 (346)
T ss_pred             CCceE-EEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecC--------------------------CcCcEE
Confidence            35566 88765  35544433447788888899999998887654332                          122222


Q ss_pred             EEeC--CCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCC-CcEEEEECcCCceeeeeecccccCcccc------
Q 006825          435 QYGK--SCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGED-CVIHVWQVVESERKGELLEKQEDGHLNM------  505 (630)
Q Consensus       435 iWd~--~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~D-gtIrVWDl~tg~~~~~l~~~~~~gh~~~------  505 (630)
                      .|.+  ..+.+..+- .+.+.|+.  -.-|+++++|++|+++..- +.|.++-+.+...+.....  ...|.+.      
T Consensus        68 ay~iD~~~G~Lt~ln-~~~~~g~~--p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~--~~~h~g~~p~~rQ  142 (346)
T COG2706          68 AYRIDPDDGRLTFLN-RQTLPGSP--PCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQ--VVKHTGSGPHERQ  142 (346)
T ss_pred             EEEEcCCCCeEEEee-ccccCCCC--CeEEEECCCCCEEEEEEccCceEEEEEcccCCcccccee--eeecCCCCCCccc
Confidence            2222  223222111 12233332  2789999999999998754 7899999966333222210  1222222      


Q ss_pred             ----eEEEEECCCCCEEEEeeCC-CeeeeecccccccccccccCccccccEEEeCC-CCceE----EeccCCCCEEEEEE
Q 006825          506 ----LLLANGSPEPTSLSPKHLD-NHLEKKRRGRSINRKSLSLDHMVVPETVFALS-DKPIC----SFQGHLDDVLDLSW  575 (630)
Q Consensus       506 ----V~svafSpdg~~lasgs~D-g~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdls-gk~l~----tL~GHs~~V~sLaf  575 (630)
                          +....+.|+++++++.... ..|                       .+|++. |++..    .+ .....-..|+|
T Consensus       143 ~~~h~H~a~~tP~~~~l~v~DLG~Dri-----------------------~~y~~~dg~L~~~~~~~v-~~G~GPRHi~F  198 (346)
T COG2706         143 ESPHVHSANFTPDGRYLVVPDLGTDRI-----------------------FLYDLDDGKLTPADPAEV-KPGAGPRHIVF  198 (346)
T ss_pred             cCCccceeeeCCCCCEEEEeecCCceE-----------------------EEEEcccCcccccccccc-CCCCCcceEEE
Confidence                7889999999998886322 123                       455552 22211    11 22334578999


Q ss_pred             cCC-CeEEEEE-CCCcEEEEeCCCC----cEEEEEe-------cCCceEEEE-cCCCcEEEEe
Q 006825          576 SKS-QHLLSSS-MDKTVRLWHLSSK----TCLKIFS-------HSDYDISLV-DRLMLRFAYG  624 (630)
Q Consensus       576 SPd-~~LaSgS-~DgtVrIWDl~tg----~~l~t~~-------H~~~V~sVa-s~~~~~lAsg  624 (630)
                      +|+ ++..... .+++|-+|.....    ++++++.       ...+.-.|. ++++..|...
T Consensus       199 Hpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYas  261 (346)
T COG2706         199 HPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYAS  261 (346)
T ss_pred             cCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEe
Confidence            999 6655444 5999999998763    2333332       233334444 6666666543

>smart00320 WD40 WD40 repeats

Probab=97.35  E-value=0.00043  Score=46.41  Aligned_cols=38  Identities=29%  Similarity=0.536  Sum_probs=34.0

Q ss_pred             CCceEEeccCCCCEEEEEEcCC-CeEEEEECCCcEEEEe
Q 006825          557 DKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWH  594 (630)
Q Consensus       557 gk~l~tL~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWD  594 (630)
                      ++++..+.+|...|.++.|.+. .++++++.|+.|++|+
T Consensus         2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            3566778889999999999998 9999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=97.32  E-value=0.00018  Score=82.81  Aligned_cols=198  Identities=16%  Similarity=0.123  Sum_probs=130.7

Q ss_pred             eeeecCccceeEEEeec---ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccccC
Q 006825          333 EMCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKG  409 (630)
Q Consensus       333 ~~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~g  409 (630)
                      ..+..|....++++|+.   .|+.|+--+.++ ++++.+|....... +|...|+-|-=+.||..+.+++          
T Consensus      1095 ~~frd~~~~fTc~afs~~~~hL~vG~~~Geik-~~nv~sG~~e~s~n-cH~SavT~vePs~dgs~~Ltss---------- 1162 (1516)
T KOG1832|consen 1095 RSFRDETALFTCIAFSGGTNHLAVGSHAGEIK-IFNVSSGSMEESVN-CHQSAVTLVEPSVDGSTQLTSS---------- 1162 (1516)
T ss_pred             hhhhccccceeeEEeecCCceEEeeeccceEE-EEEccCcccccccc-ccccccccccccCCcceeeeec----------
Confidence            45666778889999987   899999999999 99999999999888 9999999888888887655432          


Q ss_pred             CcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCc
Q 006825          410 GRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESE  489 (630)
Q Consensus       410 h~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~  489 (630)
                              .+++         -...+|++..-    +...++|.+.    .++.|+..-+.-+.|..-..+.|||+.++.
T Consensus      1163 --------s~S~---------PlsaLW~~~s~----~~~~Hsf~ed----~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~ 1217 (1516)
T KOG1832|consen 1163 --------SSSS---------PLSALWDASST----GGPRHSFDED----KAVKFSNSLQFRALGTEADDALLYDVQTCS 1217 (1516)
T ss_pred             --------cccC---------chHHHhccccc----cCcccccccc----ceeehhhhHHHHHhcccccceEEEecccCc
Confidence                    1111         12567877531    2234555443    478898755444444444678999999998


Q ss_pred             eeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeC-CCCceEEeccCCC
Q 006825          490 RKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLD  568 (630)
Q Consensus       490 ~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL~GHs~  568 (630)
                      ...+++... .+....-..+.|+|+.++|+.   ||                         .+|++ ..+.++.|.--+.
T Consensus      1218 ~l~tylt~~-~~~~y~~n~a~FsP~D~LIln---dG-------------------------vLWDvR~~~aIh~FD~ft~ 1268 (1516)
T KOG1832|consen 1218 PLQTYLTDT-VTSSYSNNLAHFSPCDTLILN---DG-------------------------VLWDVRIPEAIHRFDQFTD 1268 (1516)
T ss_pred             HHHHhcCcc-hhhhhhccccccCCCcceEee---Cc-------------------------eeeeeccHHHHhhhhhhee
Confidence            877754221 222223367889999888764   34                         56776 3355555543332


Q ss_pred             CEEEEEEcCC-CeEEEEECCCcEEEEeCCCCcEEE
Q 006825          569 DVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLK  602 (630)
Q Consensus       569 ~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg~~l~  602 (630)
                      . ..-.|+|. ..++--+     .|||++|-+.++
T Consensus      1269 ~-~~G~FHP~g~eVIINS-----EIwD~RTF~lLh 1297 (1516)
T KOG1832|consen 1269 Y-GGGGFHPSGNEVIINS-----EIWDMRTFKLLH 1297 (1516)
T ss_pred             c-ccccccCCCceEEeec-----hhhhhHHHHHHh
Confidence            2 23357887 5555444     478888754443

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=97.31  E-value=0.022  Score=63.48  Aligned_cols=144  Identities=13%  Similarity=0.023  Sum_probs=87.8

Q ss_pred             EEeec---ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCC
Q 006825          345 LMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQ  421 (630)
Q Consensus       345 Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~  421 (630)
                      +.|+|   +|+|=-.- .|. +|.-.+-..++++-  |. .|+-+.|||..+||+|-+-.......              
T Consensus       216 v~wSP~GTYL~t~Hk~-GI~-lWGG~~f~r~~RF~--Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~--------------  276 (698)
T KOG2314|consen  216 VRWSPKGTYLVTFHKQ-GIA-LWGGESFDRIQRFY--HP-GVQFIDFSPNEKYLVTYSPEPIIVEE--------------  276 (698)
T ss_pred             EEecCCceEEEEEecc-cee-eecCccHHHHHhcc--CC-CceeeecCCccceEEEecCCccccCc--------------
Confidence            55677   56665443 344 89887777777765  43 57779999999999986544211000              


Q ss_pred             CeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEE-EEEccCCCEEEEEeCCCcEEEEECcCCceeeeeeccccc
Q 006825          422 DVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWS-IKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQED  500 (630)
Q Consensus       422 d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~s-VaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~  500 (630)
                          .-.....++|||+.++.+...+.+  ++ -...+|. ..||.|++|+|--.. .+|.|++...-..+-.     ..
T Consensus       277 ----~d~e~~~l~IWDI~tG~lkrsF~~--~~-~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~lld~-----Ks  343 (698)
T KOG2314|consen  277 ----DDNEGQQLIIWDIATGLLKRSFPV--IK-SPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFMLLDK-----KS  343 (698)
T ss_pred             ----ccCCCceEEEEEccccchhcceec--cC-CCccccceEEeccCCceeEEecc-ceEEEEecCceeeecc-----cc
Confidence                011234699999999976443322  22 2233444 589999999997666 5699998755322111     01


Q ss_pred             CcccceEEEEECCCCCEEEE
Q 006825          501 GHLNMLLLANGSPEPTSLSP  520 (630)
Q Consensus       501 gh~~~V~svafSpdg~~las  520 (630)
                      -....|....|+|.+.+||.
T Consensus       344 lki~gIr~FswsP~~~llAY  363 (698)
T KOG2314|consen  344 LKISGIRDFSWSPTSNLLAY  363 (698)
T ss_pred             cCCccccCcccCCCcceEEE
Confidence            12244556667776666654

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=97.30  E-value=0.0021  Score=74.80  Aligned_cols=148  Identities=17%  Similarity=0.195  Sum_probs=102.3

Q ss_pred             EEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEe---------CCCcEEEEE
Q 006825          414 SSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAG---------EDCVIHVWQ  484 (630)
Q Consensus       414 Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS---------~DgtIrVWD  484 (630)
                      |.-+......++.|...|+|-+-|..+-+     .++++.+|++.|.++..  .|++|+|+|         .|..|+|||
T Consensus       180 v~imR~Nnr~lf~G~t~G~V~LrD~~s~~-----~iht~~aHs~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYD  252 (1118)
T KOG1275|consen  180 VTIMRYNNRNLFCGDTRGTVFLRDPNSFE-----TIHTFDAHSGSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYD  252 (1118)
T ss_pred             eEEEEecCcEEEeecccceEEeecCCcCc-----eeeeeeccccceeeeec--cCCeEEEeecccccccccccchhhhhh
Confidence            44444555568999999999999886554     58999999999987766  899999998         477899999


Q ss_pred             CcCCceeeeeecccccCcccceEEEEECCC-CCEEEEeeCCCeeeeecccccccccccccCccccccEEEeCCCCceEE-
Q 006825          485 VVESERKGELLEKQEDGHLNMLLLANGSPE-PTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICS-  562 (630)
Q Consensus       485 l~tg~~~~~l~~~~~~gh~~~V~svafSpd-g~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~t-  562 (630)
                      ++.-..+..+      +....-..+.|+|. ...++.++..|...+-+...                    +..-+... 
T Consensus       253 LRmmral~PI------~~~~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~--------------------lsNP~~~~~  306 (1118)
T KOG1275|consen  253 LRMMRALSPI------QFPYGPQFLRFHPSLTTRLAVTSQSGQFQFVDTAT--------------------LSNPPAGVK  306 (1118)
T ss_pred             hhhhhccCCc------ccccCchhhhhcccccceEEEEecccceeeccccc--------------------cCCCcccee
Confidence            9865544332      11122246778887 55666677777663222100                    11111222 


Q ss_pred             -eccCCCCEEEEEEcCC-CeEEEEECCCcEEEEe
Q 006825          563 -FQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWH  594 (630)
Q Consensus       563 -L~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWD  594 (630)
                       +.--...+..+.++++ +.++-|-.+|.|.+|-
T Consensus       307 ~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa  340 (1118)
T KOG1275|consen  307 MVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA  340 (1118)
T ss_pred             EEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence             2223345899999999 9999999999999997

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=97.28  E-value=0.00064  Score=71.64  Aligned_cols=135  Identities=15%  Similarity=0.188  Sum_probs=95.2

Q ss_pred             eEEEeecCCCe--EEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEcc-CCCEEEEEeCCCcEEEEECcCCc
Q 006825          413 SSSATDDSQDV--SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSL-DGRYLASAGEDCVIHVWQVVESE  489 (630)
Q Consensus       413 ~Vsa~~~s~d~--l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSp-DG~~LASgS~DgtIrVWDl~tg~  489 (630)
                      .|-+..|....  ++.|...|.|..+|+.++.....-+.+.|. |..+|++|..-. ++++|++.+.+|+|++||++--+
T Consensus       254 DVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rly-h~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K  332 (425)
T KOG2695|consen  254 DVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLY-HDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATK  332 (425)
T ss_pred             hHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEE-cCcchhhhhhhccccceEeeccCcCceeEeeehhhh
Confidence            45555555533  788999999999999887433334555555 999999998877 88999999999999999998766


Q ss_pred             e---eeeeecccccCcccceEEEEE--CCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeC-CCCceEEe
Q 006825          490 R---KGELLEKQEDGHLNMLLLANG--SPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSF  563 (630)
Q Consensus       490 ~---~~~l~~~~~~gh~~~V~svaf--Spdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL  563 (630)
                      +   +.+     +.||.+.-.-+-+  .++...+++++.|...                       +||.+ .|.+++++
T Consensus       333 ~~~~V~q-----YeGHvN~~a~l~~~v~~eeg~I~s~GdDcyt-----------------------RiWsl~~ghLl~ti  384 (425)
T KOG2695|consen  333 CKKSVMQ-----YEGHVNLSAYLPAHVKEEEGSIFSVGDDCYT-----------------------RIWSLDSGHLLCTI  384 (425)
T ss_pred             cccceee-----eecccccccccccccccccceEEEccCeeEE-----------------------EEEecccCceeecc
Confidence            6   444     5788665443333  4556677778888877                       77777 56676665


Q ss_pred             ccC----CCCEEEEEEc
Q 006825          564 QGH----LDDVLDLSWS  576 (630)
Q Consensus       564 ~GH----s~~V~sLafS  576 (630)
                      .-.    ...+.+++|.
T Consensus       385 pf~~s~~e~d~~sv~~~  401 (425)
T KOG2695|consen  385 PFPYSASEVDIPSVAFD  401 (425)
T ss_pred             CCCCccccccccceehh
Confidence            432    2234555554

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=97.23  E-value=0.00047  Score=74.65  Aligned_cols=173  Identities=14%  Similarity=0.143  Sum_probs=104.7

Q ss_pred             CeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeC-CCcEEEEECcCCceeeeeeccccc
Q 006825          422 DVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGE-DCVIHVWQVVESERKGELLEKQED  500 (630)
Q Consensus       422 d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~-DgtIrVWDl~tg~~~~~l~~~~~~  500 (630)
                      +.+.+++.|+.++.|....-  .....+..+..|.+.|..++.+-+|.++.|.+. |..+|++|+++-..+..+....+.
T Consensus        21 ~fiiqASlDGh~KFWkKs~i--sGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lP   98 (558)
T KOG0882|consen   21 KFIIQASLDGHKKFWKKSRI--SGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLP   98 (558)
T ss_pred             heEEeeecchhhhhcCCCCc--cceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhcccccCC
Confidence            34788999999999987532  222345667889999999999999999999888 999999998765443221100001


Q ss_pred             -------------------------------------------CcccceEEEEECCCCCEEEEeeCCCeeeeeccccccc
Q 006825          501 -------------------------------------------GHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSIN  537 (630)
Q Consensus       501 -------------------------------------------gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~  537 (630)
                                                                 -|..+|..+.+.+.+..+++....|.|.-|.......
T Consensus        99 g~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~q  178 (558)
T KOG0882|consen   99 GFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQ  178 (558)
T ss_pred             CceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccceeEeecCCCccc
Confidence                                                       1222333333333333333333333333332221000


Q ss_pred             ccccccCccccccEEEeC-CCCceEEeccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCCCcEEEEE
Q 006825          538 RKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIF  604 (630)
Q Consensus       538 ~~s~s~d~~i~~~~Vwdl-sgk~l~tL~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg~~l~t~  604 (630)
                              .......|.+ ...-+..+........++.|+|+ ..+.+-+.|..||++++.+|+.++.+
T Consensus       179 --------fPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqei  239 (558)
T KOG0882|consen  179 --------FPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEI  239 (558)
T ss_pred             --------CccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhh
Confidence                    0000012222 12222333344556789999999 88998899999999999999877655

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=97.18  E-value=0.023  Score=64.86  Aligned_cols=278  Identities=13%  Similarity=0.072  Sum_probs=161.0

Q ss_pred             cEEEEECCCCcEEEEeeecCCCceeEEEEcC-C------C--ceEeeecceeeecCccceeEEEeec---ceEeecCCCc
Q 006825          292 GCLIKNLDNGKEFVVNEIQEDGTWKKVKEVG-T------G--RQLTIEEFEMCVGHSPIVQELMRRQ---NVEEGNKDSF  359 (630)
Q Consensus       292 ~~~I~~LddG~~~~v~e~~~dg~~~~l~dv~-T------G--~~lt~eef~~l~GHs~~V~~Lafs~---~laSgS~D~t  359 (630)
                      .|.-||-..|-.   .-.|.||....|+=-+ |      |  ..-++---++|.||...|+-+-+..   .|-|...++.
T Consensus        18 ~c~~WNke~gyI---AcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~Gl   94 (1189)
T KOG2041|consen   18 HCAEWNKESGYI---ACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGL   94 (1189)
T ss_pred             EEEEEcccCCeE---EeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCce
Confidence            577788877732   2245677644443211 1      1  1112222378999999999999976   5777777888


Q ss_pred             cEecccCCCCceeEEec-CCccCCEEEEEEcCCCCeEEeecCCC---------CC--cc-ccCCcceEEEeecCCCe--E
Q 006825          360 DLNNNGSSGGGMKSKKK-GSWFKSIRTVASSVTGHKERRSSDER---------DT--SS-EKGGRRSSSATDDSQDV--S  424 (630)
Q Consensus       360 vr~vWD~~tG~~~~~lk-~gH~~~V~sVAfSpdG~~lasgS~D~---------dt--~s-~~gh~~~Vsa~~~s~d~--l  424 (630)
                      |. +|-+-.|.....+. ....+-|.++.|..||.++.-.=.|+         +.  ++ ++|..  .+-+..++|.  +
T Consensus        95 Ii-VWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg~~--l~hv~ws~D~~~~  171 (1189)
T KOG2041|consen   95 II-VWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKGQL--LAHVLWSEDLEQA  171 (1189)
T ss_pred             EE-EEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcchhe--ccceeecccHHHH
Confidence            88 99998887544332 23456788999999999876544443         11  11 22211  1122233333  3


Q ss_pred             EEecCCcEEEEEeCCCCccccee--eee----EecccCcCEEEEEEc--------cCCCEEEEEeCCCcEEEEECcCCce
Q 006825          425 FHGQERVRVRQYGKSCKDLTALY--KCQ----EIQAHNGSIWSIKFS--------LDGRYLASAGEDCVIHVWQVVESER  490 (630)
Q Consensus       425 ~Sgs~Dg~VriWd~~~~el~~~~--~v~----tL~gHt~~V~sVaFS--------pDG~~LASgS~DgtIrVWDl~tg~~  490 (630)
                      ..+-..|.+.+||.+..=...+.  +.-    .+......|-.+.|.        ||-..||.+-..|.+.|..-.+...
T Consensus       172 Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~  251 (1189)
T KOG2041|consen  172 LFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPE  251 (1189)
T ss_pred             HhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCC
Confidence            33445577888886543111111  111    111112235566664        4777899999999888875544333


Q ss_pred             eeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeCCCCceEEeccCCCCE
Q 006825          491 KGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDV  570 (630)
Q Consensus       491 ~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL~GHs~~V  570 (630)
                      ...+    ..+  -.+..+.|+++|..++.++.+..-.-   .        ...+.+   .++..-|+.+.+|+-....|
T Consensus       252 Pvv~----dtg--m~~vgakWnh~G~vLAvcG~~~da~~---~--------~d~n~v---~Fysp~G~i~gtlkvpg~~I  311 (1189)
T KOG2041|consen  252 PVVV----DTG--MKIVGAKWNHNGAVLAVCGNDSDADE---P--------TDSNKV---HFYSPYGHIVGTLKVPGSCI  311 (1189)
T ss_pred             CeEE----ecc--cEeecceecCCCcEEEEccCcccccC---c--------cccceE---EEeccchhheEEEecCCcee
Confidence            2221    122  45678899999999999877653210   0        000111   55666788888898888889


Q ss_pred             EEEEEcCCCeEEEEECCCcEEEEeC
Q 006825          571 LDLSWSKSQHLLSSSMDKTVRLWHL  595 (630)
Q Consensus       571 ~sLafSPd~~LaSgS~DgtVrIWDl  595 (630)
                      +.++|-..++=+.-..|++|.+=++
T Consensus       312 t~lsWEg~gLriA~AvdsfiyfanI  336 (1189)
T KOG2041|consen  312 TGLSWEGTGLRIAIAVDSFIYFANI  336 (1189)
T ss_pred             eeeEEcCCceEEEEEecceEEEEee
Confidence            9999866544333444555554333

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=97.16  E-value=0.003  Score=65.82  Aligned_cols=199  Identities=17%  Similarity=0.152  Sum_probs=118.5

Q ss_pred             cceEEEeecCCCe--EEEecCCcEEEEEeCCCCcccceeeeeEecccC------------cCEEEEEEccCCC--EEEEE
Q 006825          411 RRSSSATDDSQDV--SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHN------------GSIWSIKFSLDGR--YLASA  474 (630)
Q Consensus       411 ~~~Vsa~~~s~d~--l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt------------~~V~sVaFSpDG~--~LASg  474 (630)
                      ...|+++.|...+  +++|...|+|.+|......--......+|++|.            ..|..|.|-.++.  .+.-.
T Consensus        26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls  105 (460)
T COG5170          26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS  105 (460)
T ss_pred             cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence            3468888888887  666666699999975422100011234566664            5688898877553  45556


Q ss_pred             eCCCcEEEEECcCCcee----------------------eeeeccc----------------ccCcccceEEEEECCCCC
Q 006825          475 GEDCVIHVWQVVESERK----------------------GELLEKQ----------------EDGHLNMLLLANGSPEPT  516 (630)
Q Consensus       475 S~DgtIrVWDl~tg~~~----------------------~~l~~~~----------------~~gh~~~V~svafSpdg~  516 (630)
                      ..|++|++|.+......                      .++....                ...|...+.++.|..|..
T Consensus       106 tNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~e  185 (460)
T COG5170         106 TNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKE  185 (460)
T ss_pred             cCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCchh
Confidence            78999999988543110                      0000000                134555667778877777


Q ss_pred             EEEEeeCCCeeeeecccccccccccccCccccccEEEeCCCCceEEeccCC-----CCEEEEEEcCC--CeEEEEECCCc
Q 006825          517 SLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHL-----DDVLDLSWSKS--QHLLSSSMDKT  589 (630)
Q Consensus       517 ~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL~GHs-----~~V~sLafSPd--~~LaSgS~Dgt  589 (630)
                      .++++ .|-.|.+|+...        +|+.+   .        +..++.|.     .-|++..|+|.  ..+.-.+.-|+
T Consensus       186 t~lSa-DdLrINLWnl~i--------~D~sF---n--------IVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~  245 (460)
T COG5170         186 TLLSA-DDLRINLWNLEI--------IDGSF---N--------IVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGE  245 (460)
T ss_pred             eeeec-cceeeeeccccc--------cCCce---E--------EEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCc
Confidence            77665 566665555432        11111   1        22223333     45889999997  78888888999


Q ss_pred             EEEEeCCCCc-EE---EEEe-------c------CCceEEEE-cCCCcEEEEecceec
Q 006825          590 VRLWHLSSKT-CL---KIFS-------H------SDYDISLV-DRLMLRFAYGAFLNV  629 (630)
Q Consensus       590 VrIWDl~tg~-~l---~t~~-------H------~~~V~sVa-s~~~~~lAsgs~~nI  629 (630)
                      |+|-|++... |.   ..|.       |      ...|..+. .+++.++++-....|
T Consensus       246 Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyltv  303 (460)
T COG5170         246 IKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYLTV  303 (460)
T ss_pred             EEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccceE
Confidence            9999998421 11   1111       1      22334444 888888887665544

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.01  E-value=0.031  Score=65.10  Aligned_cols=178  Identities=15%  Similarity=0.082  Sum_probs=112.1

Q ss_pred             eEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcC-EEEEEEccCCCEEEEEeCCCc-----EEEEECc
Q 006825          413 SSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGS-IWSIKFSLDGRYLASAGEDCV-----IHVWQVV  486 (630)
Q Consensus       413 ~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~-V~sVaFSpDG~~LASgS~Dgt-----IrVWDl~  486 (630)
                      .+++..-+...++-|+.+|.|.+++-.-.      .++.+++|... |..+....+-.+|++-++|..     |+||+++
T Consensus        27 ~isc~~s~~~~vvigt~~G~V~~Ln~s~~------~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~le  100 (933)
T KOG2114|consen   27 AISCCSSSTGSVVIGTADGRVVILNSSFQ------LIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLE  100 (933)
T ss_pred             ceeEEcCCCceEEEeeccccEEEecccce------eeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEeccc
Confidence            44454444444888999999999875432      44778888887 554444444479999988865     9999996


Q ss_pred             CC------ceeeeeecc--cccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeCCCC
Q 006825          487 ES------ERKGELLEK--QEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDK  558 (630)
Q Consensus       487 tg------~~~~~l~~~--~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk  558 (630)
                      .-      +++.+....  .......++.+++.+.+-+.+|+|..+|.|....-.             +    +-+ .|.
T Consensus       101 k~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GD-------------i----~RD-rgs  162 (933)
T KOG2114|consen  101 KVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGD-------------I----LRD-RGS  162 (933)
T ss_pred             ccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCc-------------c----hhc-ccc
Confidence            43      222111111  112235667899999999999999999987321100             0    000 111


Q ss_pred             ceEEeccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCCCc-EEEEEe-cCCceEEEE
Q 006825          559 PICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKT-CLKIFS-HSDYDISLV  614 (630)
Q Consensus       559 ~l~tL~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg~-~l~t~~-H~~~V~sVa  614 (630)
                      ...-...-..+|+.|+|..+ ..++-...-..|.+|.+.... .+.++. |+..+.|..
T Consensus       163 r~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss  221 (933)
T KOG2114|consen  163 RQDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSS  221 (933)
T ss_pred             ceeeeccCCCCceeeEEecCCceeEEEEecceeEEEEecCCCcceeeeccCCccceeee
Confidence            11112233468999999877 443455555679999998444 244565 888888888

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=97.00  E-value=0.00071  Score=78.15  Aligned_cols=148  Identities=14%  Similarity=0.150  Sum_probs=106.9

Q ss_pred             eeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCee
Q 006825          448 KCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHL  527 (630)
Q Consensus       448 ~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I  527 (630)
                      ...+|..|+...+|++|+-+.++|+.|+..|.||++++.+|.....     ..+|...|+-+.-+.+|..+++.+.-..-
T Consensus      1093 ~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s-----~ncH~SavT~vePs~dgs~~Ltsss~S~P 1167 (1516)
T KOG1832|consen 1093 SWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEES-----VNCHQSAVTLVEPSVDGSTQLTSSSSSSP 1167 (1516)
T ss_pred             cchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCcccccc-----ccccccccccccccCCcceeeeeccccCc
Confidence            3456788999999999999999999999999999999999987665     48999999999999898888776543320


Q ss_pred             eeecccccccccccccCccccccEEEeC--CCCceEEeccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCCCcEEEEE
Q 006825          528 EKKRRGRSINRKSLSLDHMVVPETVFAL--SDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIF  604 (630)
Q Consensus       528 ~i~~~~~~~~~~s~s~d~~i~~~~Vwdl--sgk~l~tL~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg~~l~t~  604 (630)
                                           ...+|++  .+.+.++|.+    -.++.|+.. +.-+-|..-..+.|||+.|+..+.++
T Consensus      1168 ---------------------lsaLW~~~s~~~~~Hsf~e----d~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~ty 1222 (1516)
T KOG1832|consen 1168 ---------------------LSALWDASSTGGPRHSFDE----DKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTY 1222 (1516)
T ss_pred             ---------------------hHHHhccccccCccccccc----cceeehhhhHHHHHhcccccceEEEecccCcHHHHh
Confidence                                 0157877  5667666653    367899887 44444444456789999999877774


Q ss_pred             -e---cCCceEEEE--cCCCcEEEEec
Q 006825          605 -S---HSDYDISLV--DRLMLRFAYGA  625 (630)
Q Consensus       605 -~---H~~~V~sVa--s~~~~~lAsgs  625 (630)
                       .   ...+-..++  +|....+.-++
T Consensus      1223 lt~~~~~~y~~n~a~FsP~D~LIlndG 1249 (1516)
T KOG1832|consen 1223 LTDTVTSSYSNNLAHFSPCDTLILNDG 1249 (1516)
T ss_pred             cCcchhhhhhccccccCCCcceEeeCc
Confidence             2   233333444  55555544443

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=96.92  E-value=0.041  Score=63.49  Aligned_cols=134  Identities=9%  Similarity=0.004  Sum_probs=97.0

Q ss_pred             eeEEEEcCCCceEeeecceeeecCccceeEEEeec---------------ceEeecCCCccEecccCCCCceeEEecCCc
Q 006825          315 WKKVKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQ---------------NVEEGNKDSFDLNNNGSSGGGMKSKKKGSW  379 (630)
Q Consensus       315 ~~~l~dv~TG~~lt~eef~~l~GHs~~V~~Lafs~---------------~laSgS~D~tvr~vWD~~tG~~~~~lk~gH  379 (630)
                      ...+-|..+-+.+     +.+.-|...|+.+.+.|               .||++---|.|. +||...+..+-.+. .|
T Consensus        36 lV~VVDs~s~q~i-----qsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIi-l~d~~~~s~~~~l~-~~  108 (1062)
T KOG1912|consen   36 LVSVVDSRSLQLI-----QSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRII-LVDFVLASVINWLS-HS  108 (1062)
T ss_pred             eEEEEehhhhhhh-----hccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEE-EEEehhhhhhhhhc-CC
Confidence            3445555555555     88888999999999877               477777789999 99999999998888 89


Q ss_pred             cCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCE
Q 006825          380 FKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSI  459 (630)
Q Consensus       380 ~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V  459 (630)
                      .++|..+.|-+.-                         +++.+.++.-....+|.+|+..+++.     ......-....
T Consensus       109 ~~~~qdl~W~~~r-------------------------d~Srd~LlaIh~ss~lvLwntdtG~k-----~Wk~~ys~~iL  158 (1062)
T KOG1912|consen  109 NDSVQDLCWVPAR-------------------------DDSRDVLLAIHGSSTLVLWNTDTGEK-----FWKYDYSHEIL  158 (1062)
T ss_pred             Ccchhheeeeecc-------------------------CcchheeEEecCCcEEEEEEccCCce-----eeccccCCcce
Confidence            9999888887731                         23446666666677899998888753     22223333466


Q ss_pred             EEEEEcc-CCCEEEEEeCCCcEEEEEC
Q 006825          460 WSIKFSL-DGRYLASAGEDCVIHVWQV  485 (630)
Q Consensus       460 ~sVaFSp-DG~~LASgS~DgtIrVWDl  485 (630)
                      .|+.|.| |.+.+..-+..|.|-+-+.
T Consensus       159 s~f~~DPfd~rh~~~l~s~g~vl~~~~  185 (1062)
T KOG1912|consen  159 SCFRVDPFDSRHFCVLGSKGFVLSCKD  185 (1062)
T ss_pred             eeeeeCCCCcceEEEEccCceEEEEec
Confidence            7799998 7776666566676666554

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.90  E-value=0.036  Score=64.20  Aligned_cols=136  Identities=13%  Similarity=0.069  Sum_probs=89.8

Q ss_pred             ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecC
Q 006825          350 NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQE  429 (630)
Q Consensus       350 ~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~  429 (630)
                      +++|+|.|+++. |-.+-+++...+..  ..+.|++||++|+-.+-                        ....+++|+.
T Consensus        85 y~asCS~DGkv~-I~sl~~~~~~~~~d--f~rpiksial~Pd~~~~------------------------~sk~fv~GG~  137 (846)
T KOG2066|consen   85 YVASCSDDGKVV-IGSLFTDDEITQYD--FKRPIKSIALHPDFSRQ------------------------QSKQFVSGGM  137 (846)
T ss_pred             eEEEecCCCcEE-EeeccCCccceeEe--cCCcceeEEeccchhhh------------------------hhhheeecCc
Confidence            799999999998 88888887776654  67899999999972110                        1112677777


Q ss_pred             CcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeeccc-ccCcccceEE
Q 006825          430 RVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQ-EDGHLNMLLL  508 (630)
Q Consensus       430 Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~-~~gh~~~V~s  508 (630)
                      .| +.++...--...   ....+..-.++|.+|.|  .|+++|-++.+| |+|+|+.+++.+..+.... .......-..
T Consensus       138 ag-lvL~er~wlgnk---~~v~l~~~eG~I~~i~W--~g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpph  210 (846)
T KOG2066|consen  138 AG-LVLSERNWLGNK---DSVVLSEGEGPIHSIKW--RGNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPH  210 (846)
T ss_pred             ce-EEEehhhhhcCc---cceeeecCccceEEEEe--cCcEEEEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCc
Confidence            77 666654211110   11145667889999999  789999998887 8999999888776542110 0111112235


Q ss_pred             EEECCCCCEEE
Q 006825          509 ANGSPEPTSLS  519 (630)
Q Consensus       509 vafSpdg~~la  519 (630)
                      +.|.++.++++
T Consensus       211 l~W~~~~~LVI  221 (846)
T KOG2066|consen  211 LHWQDEDRLVI  221 (846)
T ss_pred             eEecCCCeEEE
Confidence            77777665443

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=96.85  E-value=0.25  Score=49.17  Aligned_cols=149  Identities=9%  Similarity=-0.019  Sum_probs=81.3

Q ss_pred             EEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccCcc
Q 006825          424 SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHL  503 (630)
Q Consensus       424 l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~  503 (630)
                      ++.+..++.|..||..+++..-   ...+.+.....   .. ..+..++.+..|+.|..+|+.+|+.+.+..........
T Consensus        39 v~~~~~~~~l~~~d~~tG~~~W---~~~~~~~~~~~---~~-~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~  111 (238)
T PF13360_consen   39 VYVASGDGNLYALDAKTGKVLW---RFDLPGPISGA---PV-VDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAG  111 (238)
T ss_dssp             EEEEETTSEEEEEETTTSEEEE---EEECSSCGGSG---EE-EETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCS
T ss_pred             EEEEcCCCEEEEEECCCCCEEE---Eeeccccccce---ee-ecccccccccceeeeEecccCCcceeeeeccccccccc
Confidence            4555678889999987775311   11222211111   12 24455666678889999999999988773211101111


Q ss_pred             cceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeC-CCCceEEeccCCCC----------E-E
Q 006825          504 NMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDD----------V-L  571 (630)
Q Consensus       504 ~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL~GHs~~----------V-~  571 (630)
                       ..........+..++.+..++.|                       ..+++ +|+.+..+..+...          + .
T Consensus       112 -~~~~~~~~~~~~~~~~~~~~g~l-----------------------~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~  167 (238)
T PF13360_consen  112 -VRSSSSPAVDGDRLYVGTSSGKL-----------------------VALDPKTGKLLWKYPVGEPRGSSPISSFSDING  167 (238)
T ss_dssp             -TB--SEEEEETTEEEEEETCSEE-----------------------EEEETTTTEEEEEEESSTT-SS--EEEETTEEE
T ss_pred             -cccccCceEecCEEEEEeccCcE-----------------------EEEecCCCcEEEEeecCCCCCCcceeeeccccc
Confidence             11111222236677777777777                       45554 56665555443321          1 2


Q ss_pred             EEEEcCCCeEEEEECCCc-EEEEeCCCCcEEEEEe
Q 006825          572 DLSWSKSQHLLSSSMDKT-VRLWHLSSKTCLKIFS  605 (630)
Q Consensus       572 sLafSPd~~LaSgS~Dgt-VrIWDl~tg~~l~t~~  605 (630)
                      .+.+. ++.+..++.++. +.+ |+.+++.+....
T Consensus       168 ~~~~~-~~~v~~~~~~g~~~~~-d~~tg~~~w~~~  200 (238)
T PF13360_consen  168 SPVIS-DGRVYVSSGDGRVVAV-DLATGEKLWSKP  200 (238)
T ss_dssp             EEECC-TTEEEEECCTSSEEEE-ETTTTEEEEEEC
T ss_pred             ceEEE-CCEEEEEcCCCeEEEE-ECCCCCEEEEec
Confidence            23333 346777777775 566 999998665333

...

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=96.82  E-value=0.13  Score=56.33  Aligned_cols=197  Identities=9%  Similarity=-0.015  Sum_probs=98.4

Q ss_pred             ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecC
Q 006825          350 NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQE  429 (630)
Q Consensus       350 ~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~  429 (630)
                      .+..++.++.+. ..|.++|+.+-+.... ...+     ..                 .+....+.    ....++.+..
T Consensus       162 ~v~v~~~~g~l~-ald~~tG~~~W~~~~~-~~~~-----~~-----------------~~~~sP~v----~~~~v~~~~~  213 (394)
T PRK11138        162 LVLVHTSNGMLQ-ALNESDGAVKWTVNLD-VPSL-----TL-----------------RGESAPAT----AFGGAIVGGD  213 (394)
T ss_pred             EEEEECCCCEEE-EEEccCCCEeeeecCC-CCcc-----cc-----------------cCCCCCEE----ECCEEEEEcC
Confidence            455566778888 8899999988776621 1000     00                 00001111    1123455666


Q ss_pred             CcEEEEEeCCCCcccceeeeeEec-ccC-cCEEEEEEcc--CCCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccc
Q 006825          430 RVRVRQYGKSCKDLTALYKCQEIQ-AHN-GSIWSIKFSL--DGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNM  505 (630)
Q Consensus       430 Dg~VriWd~~~~el~~~~~v~tL~-gHt-~~V~sVaFSp--DG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~  505 (630)
                      ++.+..++..+++..=.+....-. .+. .....+.-+|  .+..|+.++.++.+...|+.+|+.+....    .+.   
T Consensus       214 ~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~----~~~---  286 (394)
T PRK11138        214 NGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKRE----YGS---  286 (394)
T ss_pred             CCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeec----CCC---
Confidence            777777777665431110000000 000 0011111222  34556677889999999999998765431    111   


Q ss_pred             eEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeCCCCceEEeccCCCCEEEEEEcCCCeEEEEE
Q 006825          506 LLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKSQHLLSSS  585 (630)
Q Consensus       506 V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL~GHs~~V~sLafSPd~~LaSgS  585 (630)
                      ...+..  .+..+..+..++.+...+....              ..+|....     + .+. ........ +++|+.++
T Consensus       287 ~~~~~~--~~~~vy~~~~~g~l~ald~~tG--------------~~~W~~~~-----~-~~~-~~~sp~v~-~g~l~v~~  342 (394)
T PRK11138        287 VNDFAV--DGGRIYLVDQNDRVYALDTRGG--------------VELWSQSD-----L-LHR-LLTAPVLY-NGYLVVGD  342 (394)
T ss_pred             ccCcEE--ECCEEEEEcCCCeEEEEECCCC--------------cEEEcccc-----c-CCC-cccCCEEE-CCEEEEEe
Confidence            111111  2344445556666622221110              02333210     0 010 11111221 37888999


Q ss_pred             CCCcEEEEeCCCCcEEEEEe
Q 006825          586 MDKTVRLWHLSSKTCLKIFS  605 (630)
Q Consensus       586 ~DgtVrIWDl~tg~~l~t~~  605 (630)
                      .||.|.+.|..+|+.+..++
T Consensus       343 ~~G~l~~ld~~tG~~~~~~~  362 (394)
T PRK11138        343 SEGYLHWINREDGRFVAQQK  362 (394)
T ss_pred             CCCEEEEEECCCCCEEEEEE
Confidence            99999999999999988876

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=96.80  E-value=0.014  Score=65.56  Aligned_cols=74  Identities=11%  Similarity=-0.050  Sum_probs=60.9

Q ss_pred             ccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeeccc
Q 006825          454 AHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRG  533 (630)
Q Consensus       454 gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~  533 (630)
                      .+...|.+++++|+..+|+.|..||+|++||...+....       ....-....++|+|+|.+++.|+.-|.+.+|+..
T Consensus       257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~-------~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~A  329 (545)
T PF11768_consen  257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLL-------AKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMA  329 (545)
T ss_pred             ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeee-------eeecccceEEEEcCCCcEEEEEcCCceEEEEEee
Confidence            477889999999999999999999999999997653322       2233456789999999999999999999777754


Q ss_pred             c
Q 006825          534 R  534 (630)
Q Consensus       534 ~  534 (630)
                      -
T Consensus       330 L  330 (545)
T PF11768_consen  330 L  330 (545)
T ss_pred             c
Confidence            3

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=96.74  E-value=0.095  Score=54.45  Aligned_cols=192  Identities=11%  Similarity=0.050  Sum_probs=105.9

Q ss_pred             eeecCCCCcccCCCccccccCCCCCcccccccEEEEECCCCcEEEEeeecCCCceeEEEEcCCCceEeeecceeeecCcc
Q 006825          261 MSINGNGNYIGNSGEVVEDFDGNGTAGVAEQGCLIKNLDNGKEFVVNEIQEDGTWKKVKEVGTGRQLTIEEFEMCVGHSP  340 (630)
Q Consensus       261 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~LddG~~~~v~e~~~dg~~~~l~dv~TG~~lt~eef~~l~GHs~  340 (630)
                      ++.|||+..|              |-++..+..++.||-....|++.- ..+..         |.            -+.
T Consensus        49 l~WSpD~tlL--------------a~a~S~G~i~vfdl~g~~lf~I~p-~~~~~---------~d------------~~~   92 (282)
T PF15492_consen   49 LAWSPDCTLL--------------AYAESTGTIRVFDLMGSELFVIPP-AMSFP---------GD------------LSD   92 (282)
T ss_pred             EEECCCCcEE--------------EEEcCCCeEEEEecccceeEEcCc-ccccC---------Cc------------ccc
Confidence            6899999999              566777899999997655554422 22111         10            123


Q ss_pred             ceeEEEeecc---------eEeecCCCccEecccCC-----CCceeEEec--CCccCCEEEEEEcCCCCeEEeecCCC-C
Q 006825          341 IVQELMRRQN---------VEEGNKDSFDLNNNGSS-----GGGMKSKKK--GSWFKSIRTVASSVTGHKERRSSDER-D  403 (630)
Q Consensus       341 ~V~~Lafs~~---------laSgS~D~tvr~vWD~~-----tG~~~~~lk--~gH~~~V~sVAfSpdG~~lasgS~D~-d  403 (630)
                      +|..|+|.+.         |..-..++.++ -+-+.     ..+..+.+.  ..+...|.++.+.|.-++|.-|+... +
T Consensus        93 Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~-Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~  171 (282)
T PF15492_consen   93 AIAGLIFLEYKKSAQWSYELLVINYRGQLR-SYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQ  171 (282)
T ss_pred             ceeeeEeeccccccccceeEEEEeccceee-eEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCC
Confidence            3444444331         22223334444 33221     233444433  35678999999999877665555443 2


Q ss_pred             CccccCCcceEE---EeecCCCe-EEEecCCcEE------EEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEE
Q 006825          404 TSSEKGGRRSSS---ATDDSQDV-SFHGQERVRV------RQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLAS  473 (630)
Q Consensus       404 t~s~~gh~~~Vs---a~~~s~d~-l~Sgs~Dg~V------riWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LAS  473 (630)
                      .+..+.-...++   -+...+.. .+....+...      -+|.+-+..   ++.  ....-...|..|..||||++||+
T Consensus       172 ~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~---~fs--~~~~~~d~i~kmSlSPdg~~La~  246 (282)
T PF15492_consen  172 DGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFK---FFS--RQGQEQDGIFKMSLSPDGSLLAC  246 (282)
T ss_pred             CccccccccCceEEEEcCCCCcEEEccccCccccccccccceeecccee---eee--ccccCCCceEEEEECCCCCEEEE
Confidence            222222222222   23444444 3333322221      222221110   011  11234678999999999999999


Q ss_pred             EeCCCcEEEEECcCCceeeee
Q 006825          474 AGEDCVIHVWQVVESERKGEL  494 (630)
Q Consensus       474 gS~DgtIrVWDl~tg~~~~~l  494 (630)
                      ...+|.|.||++..-...+..
T Consensus       247 ih~sG~lsLW~iPsL~~~~~W  267 (282)
T PF15492_consen  247 IHFSGSLSLWEIPSLRLQRSW  267 (282)
T ss_pred             EEcCCeEEEEecCcchhhccc
Confidence            999999999999876666554

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=96.72  E-value=0.84  Score=55.81  Aligned_cols=204  Identities=15%  Similarity=0.125  Sum_probs=115.9

Q ss_pred             CEEEEEEcCCCCeEEeecCCCCCc------------c----ccCCcceEEEeecCCCe-EEEecC----CcEEEEEeCCC
Q 006825          382 SIRTVASSVTGHKERRSSDERDTS------------S----EKGGRRSSSATDDSQDV-SFHGQE----RVRVRQYGKSC  440 (630)
Q Consensus       382 ~V~sVAfSpdG~~lasgS~D~dt~------------s----~~gh~~~Vsa~~~s~d~-l~Sgs~----Dg~VriWd~~~  440 (630)
                      .--.++|-.||+|+|.++-+..++            .    ...-.+.-.++++.|.| ++++..    ...|.+|...+
T Consensus       211 ~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~ReG~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNG  290 (928)
T PF04762_consen  211 GRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSREGELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNG  290 (928)
T ss_pred             CceEEEECCCCcEEEEEEEEcCCCceeEEEEECCCceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCC
Confidence            444589999999999877533211            0    11112223455666777 433332    36778887643


Q ss_pred             CcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCc--eeeeeecccccCcccceEEEEECCC-CCE
Q 006825          441 KDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESE--RKGELLEKQEDGHLNMLLLANGSPE-PTS  517 (630)
Q Consensus       441 ~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~--~~~~l~~~~~~gh~~~V~svafSpd-g~~  517 (630)
                      -.- +.+.+ .+......|..|+|++|+..||.--.|. |.+|-..+-.  ..+++.    ......+..+.|+|. ...
T Consensus       291 Lrh-geF~l-~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~----~~~~~~~~~~~Wdpe~p~~  363 (928)
T PF04762_consen  291 LRH-GEFTL-RFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIR----FSSSESVNFVKWDPEKPLR  363 (928)
T ss_pred             cEe-eeEec-CCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEE----ccCCCCCCceEECCCCCCE
Confidence            221 11111 1234567899999999999999988766 9999886643  223321    222233445999997 444


Q ss_pred             EEEeeCCCeeeeecccccccccc-ccc-CccccccEEEeCCCC----------------ceEEeccCCCCEEEEEEcCC-
Q 006825          518 LSPKHLDNHLEKKRRGRSINRKS-LSL-DHMVVPETVFALSDK----------------PICSFQGHLDDVLDLSWSKS-  578 (630)
Q Consensus       518 lasgs~Dg~I~i~~~~~~~~~~s-~s~-d~~i~~~~Vwdlsgk----------------~l~tL~GHs~~V~sLafSPd-  578 (630)
                      +.....++.+............. ..+ |..+    +--+.|.                ..+++. -...|.+++|+++ 
T Consensus       364 L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~----vaVIDG~~lllTpf~~a~VPPPMs~~~l~-~~~~v~~vaf~~~~  438 (928)
T PF04762_consen  364 LHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGT----VAVIDGNKLLLTPFRRAVVPPPMSSYELE-LPSPVNDVAFSPSN  438 (928)
T ss_pred             EEEEecCCcEEEEEEEEEEEecCCCCccCceE----EEEEeCCeEEEecccccCCCchHhceEEc-CCCCcEEEEEeCCC
Confidence            55555556554333322111110 001 1111    1111111                122333 3467999999998 


Q ss_pred             CeEEEEECCCcEEEEeCCC
Q 006825          579 QHLLSSSMDKTVRLWHLSS  597 (630)
Q Consensus       579 ~~LaSgS~DgtVrIWDl~t  597 (630)
                      ..++.-..||+|.+|....
T Consensus       439 ~~~avl~~d~~l~~~~~~~  457 (928)
T PF04762_consen  439 SRFAVLTSDGSLSIYEWDL  457 (928)
T ss_pred             CeEEEEECCCCEEEEEecC
Confidence            6799999999999998543

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=96.65  E-value=1  Score=47.94  Aligned_cols=228  Identities=14%  Similarity=0.046  Sum_probs=125.7

Q ss_pred             CCCceeEEEEcCCCceE---eeecceeeecCccceeEEEeec---ceEe-----ecCCCccEecccCC-CCceeEEecCC
Q 006825          311 EDGTWKKVKEVGTGRQL---TIEEFEMCVGHSPIVQELMRRQ---NVEE-----GNKDSFDLNNNGSS-GGGMKSKKKGS  378 (630)
Q Consensus       311 ~dg~~~~l~dv~TG~~l---t~eef~~l~GHs~~V~~Lafs~---~laS-----gS~D~tvr~vWD~~-tG~~~~~lk~g  378 (630)
                      .-|.|..++|..+|+.+   ...+-.-|.||.      +|++   .|.+     ....+.|- |||+. +.+.+..+. .
T Consensus        25 RPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg------~fs~dG~~LytTEnd~~~g~G~Ig-Vyd~~~~~~ri~E~~-s   96 (305)
T PF07433_consen   25 RPGTFALVFDCRTGQLLQRLWAPPGRHFYGHG------VFSPDGRLLYTTENDYETGRGVIG-VYDAARGYRRIGEFP-S   96 (305)
T ss_pred             CCCcEEEEEEcCCCceeeEEcCCCCCEEecCE------EEcCCCCEEEEeccccCCCcEEEE-EEECcCCcEEEeEec-C
Confidence            46888999999998876   223345577774      4554   2222     23346666 99998 556666665 2


Q ss_pred             ccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEe--cccC
Q 006825          379 WFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEI--QAHN  456 (630)
Q Consensus       379 H~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL--~gHt  456 (630)
                      |-=.=--+.+.|||+.|+.+...-.|....| +...+-          ...+-.+-..|..++++.   ....|  .-|.
T Consensus        97 ~GIGPHel~l~pDG~tLvVANGGI~Thpd~G-R~kLNl----------~tM~psL~~ld~~sG~ll---~q~~Lp~~~~~  162 (305)
T PF07433_consen   97 HGIGPHELLLMPDGETLVVANGGIETHPDSG-RAKLNL----------DTMQPSLVYLDARSGALL---EQVELPPDLHQ  162 (305)
T ss_pred             CCcChhhEEEcCCCCEEEEEcCCCccCcccC-ceecCh----------hhcCCceEEEecCCCcee---eeeecCccccc
Confidence            2211123788999987776543321111110 001111          111222344444455432   12335  3488


Q ss_pred             cCEEEEEEccCCCEEEEEeCCCc-------EEEEECcCCceeeeee--cccccCcccceEEEEECCCCCEEEEee-CCCe
Q 006825          457 GSIWSIKFSLDGRYLASAGEDCV-------IHVWQVVESERKGELL--EKQEDGHLNMLLLANGSPEPTSLSPKH-LDNH  526 (630)
Q Consensus       457 ~~V~sVaFSpDG~~LASgS~Dgt-------IrVWDl~tg~~~~~l~--~~~~~gh~~~V~svafSpdg~~lasgs-~Dg~  526 (630)
                      -+|.-|++.++|..++-.-..+-       |-+|+-  ++.+..+.  ......-.+.+-+|++++++.+++..+ ..+.
T Consensus       163 lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~--g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~  240 (305)
T PF07433_consen  163 LSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRR--GGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGR  240 (305)
T ss_pred             cceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcC--CCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCE
Confidence            89999999999986665543332       223332  22221111  111133446788999999998776554 4455


Q ss_pred             eeeecccccccccccccCccccccEEEeC-CCCceEEeccCCCCEEEEEEcCCCeEEEEECC
Q 006825          527 LEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSWSKSQHLLSSSMD  587 (630)
Q Consensus       527 I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL~GHs~~V~sLafSPd~~LaSgS~D  587 (630)
                      +                       .+|+. +++.+....  -..+..|+-.++++++|.+.-
T Consensus       241 ~-----------------------~~~d~~tg~~~~~~~--l~D~cGva~~~~~f~~ssG~G  277 (305)
T PF07433_consen  241 V-----------------------AVWDAATGRLLGSVP--LPDACGVAPTDDGFLVSSGQG  277 (305)
T ss_pred             E-----------------------EEEECCCCCEeeccc--cCceeeeeecCCceEEeCCCc
Confidence            5                       78876 666655432  235677777666766665543

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=96.59  E-value=0.099  Score=59.00  Aligned_cols=64  Identities=16%  Similarity=0.102  Sum_probs=50.2

Q ss_pred             EEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeee
Q 006825          424 SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGEL  494 (630)
Q Consensus       424 l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l  494 (630)
                      ++.|+.||.|.+||...+       +..+..+.-..+.++|+|+|.+|+.|+.-|.|.+||+.-.....++
T Consensus       274 LvlGC~DgSiiLyD~~~~-------~t~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALspi~~qL  337 (545)
T PF11768_consen  274 LVLGCEDGSIILYDTTRG-------VTLLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSPIKMQL  337 (545)
T ss_pred             EEEEecCCeEEEEEcCCC-------eeeeeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecCccceee
Confidence            578899999999998655       2223344556789999999999999999999999999765544443

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=96.36  E-value=0.57  Score=50.61  Aligned_cols=217  Identities=13%  Similarity=0.072  Sum_probs=102.6

Q ss_pred             EEEEEEcCCCCeEEeecCCC-CCcc------ccCCc--ceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEec
Q 006825          383 IRTVASSVTGHKERRSSDER-DTSS------EKGGR--RSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQ  453 (630)
Q Consensus       383 V~sVAfSpdG~~lasgS~D~-dt~s------~~gh~--~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~  453 (630)
                      -.++.|||||++|+.-..|. ....      ...+.  -.+........|-  ..-..++.++++.+++...+.....+.
T Consensus       103 ~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~--~np~v~l~v~~~~~~~~~~~~~~~~~~  180 (353)
T PF00930_consen  103 RSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGD--PNPRVSLFVVDLASGKTTELDPPNSLN  180 (353)
T ss_dssp             SBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS-----EEEEEEEESSSTCCCEE---HHHH
T ss_pred             ccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCC--cCCceEEEEEECCCCcEEEeeeccccC
Confidence            35689999999998876554 1111      11110  1222222221110  002345778898877643222111123


Q ss_pred             ccCcCEEEEEEccCCCEEEE--EeCCC---cEEEEECcCCceeeeeecccccCcccceEEEEEC-CCCCEEEE-eeCCCe
Q 006825          454 AHNGSIWSIKFSLDGRYLAS--AGEDC---VIHVWQVVESERKGELLEKQEDGHLNMLLLANGS-PEPTSLSP-KHLDNH  526 (630)
Q Consensus       454 gHt~~V~sVaFSpDG~~LAS--gS~Dg---tIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafS-pdg~~las-gs~Dg~  526 (630)
                      .-...+..+.|.++++.|+.  -..+.   .+.+.|+.++.+...+. ....+.........+. +++..++. ...+|-
T Consensus       181 ~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~-e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~  259 (353)
T PF00930_consen  181 PQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLE-ETSDGWVDVYDPPHFLGPDGNEFLWISERDGY  259 (353)
T ss_dssp             TSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEE-EESSSSSSSSSEEEE-TTTSSEEEEEEETTSS
T ss_pred             CCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEE-ecCCcceeeecccccccCCCCEEEEEEEcCCC
Confidence            44667999999999993333  34443   35567777665433321 1112222222234443 55444443 334442


Q ss_pred             eeeecccccccccccccCccccccEEEeCCCCceEEeccCCCCEEE-EEEcCC-CeE-EEEECCC--cEEEE--eCCCCc
Q 006825          527 LEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLD-LSWSKS-QHL-LSSSMDK--TVRLW--HLSSKT  599 (630)
Q Consensus       527 I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL~GHs~~V~s-LafSPd-~~L-aSgS~Dg--tVrIW--Dl~tg~  599 (630)
                      -.+                     .+.+..+.....+....-.|+. +.|.++ +.| .++..+.  .-.||  ++..+.
T Consensus       260 ~hl---------------------y~~~~~~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~  318 (353)
T PF00930_consen  260 RHL---------------------YLYDLDGGKPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGG  318 (353)
T ss_dssp             EEE---------------------EEEETTSSEEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETT
T ss_pred             cEE---------------------EEEcccccceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCC
Confidence            211                     4445566666677666667755 667777 444 4565533  33444  444234


Q ss_pred             EEEEEecCCce-EEEE-cCCCcEEEE
Q 006825          600 CLKIFSHSDYD-ISLV-DRLMLRFAY  623 (630)
Q Consensus       600 ~l~t~~H~~~V-~sVa-s~~~~~lAs  623 (630)
                      .+..+...... ..+. +|++.+++.
T Consensus       319 ~~~~LT~~~~~~~~~~~Spdg~y~v~  344 (353)
T PF00930_consen  319 EPKCLTCEDGDHYSASFSPDGKYYVD  344 (353)
T ss_dssp             EEEESSTTSSTTEEEEE-TTSSEEEE
T ss_pred             CeEeccCCCCCceEEEECCCCCEEEE
Confidence            44555422222 3455 777666654

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=96.28  E-value=0.13  Score=59.64  Aligned_cols=223  Identities=13%  Similarity=0.108  Sum_probs=132.9

Q ss_pred             EEEeec--ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCC
Q 006825          344 ELMRRQ--NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQ  421 (630)
Q Consensus       344 ~Lafs~--~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~  421 (630)
                      ++-++|  .+|=||. ..|. +=|..+-+.++.+. .|...|.+|-|.|--.                |....+ ..-.+
T Consensus        20 A~Dw~~~GLiAygsh-slV~-VVDs~s~q~iqsie-~h~s~V~~VrWap~~~----------------p~~llS-~~~~~   79 (1062)
T KOG1912|consen   20 AADWSPSGLIAYGSH-SLVS-VVDSRSLQLIQSIE-LHQSAVTSVRWAPAPS----------------PRDLLS-PSSSQ   79 (1062)
T ss_pred             ccccCccceEEEecC-ceEE-EEehhhhhhhhccc-cCccceeEEEeccCCC----------------chhccC-ccccc
Confidence            334444  3444443 3444 77888889999998 8999999999999421                111100 00122


Q ss_pred             CeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEcc---CC-CEEEEEeCCCcEEEEECcCCceeeeeecc
Q 006825          422 DVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSL---DG-RYLASAGEDCVIHVWQVVESERKGELLEK  497 (630)
Q Consensus       422 d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSp---DG-~~LASgS~DgtIrVWDl~tg~~~~~l~~~  497 (630)
                      -.++++.-.|+|-+||....-     .+..|..|..+|..++|-+   +. .+|+.-..-.+|-+|+..+|+.....   
T Consensus        80 lliAsaD~~GrIil~d~~~~s-----~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~---  151 (1062)
T KOG1912|consen   80 LLIASADISGRIILVDFVLAS-----VINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKY---  151 (1062)
T ss_pred             eeEEeccccCcEEEEEehhhh-----hhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeecc---
Confidence            337888889999999987653     2455788999999999976   44 35666666789999999999876652   


Q ss_pred             cccCcccceEEEEECC-CCCEEEEeeCCCeeeeecc-cccccccccccCccccccEEEeCCCC--ceE-------EeccC
Q 006825          498 QEDGHLNMLLLANGSP-EPTSLSPKHLDNHLEKKRR-GRSINRKSLSLDHMVVPETVFALSDK--PIC-------SFQGH  566 (630)
Q Consensus       498 ~~~gh~~~V~svafSp-dg~~lasgs~Dg~I~i~~~-~~~~~~~s~s~d~~i~~~~Vwdlsgk--~l~-------tL~GH  566 (630)
                        ........++.+.| |.+.+..-+..|.+.+.+. +.....         .+.+.+.++..  .+.       +-..|
T Consensus       152 --~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~---------~pgk~~qI~sd~Sdl~~lere~at~ns~  220 (1062)
T KOG1912|consen  152 --DYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPD---------VPGKEFQITSDHSDLAHLERETATGNST  220 (1062)
T ss_pred             --ccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCC---------CCceeEEEecCccchhhhhhhhhccccc
Confidence              33334556677777 3455555445555432221 111000         00011211100  000       00001


Q ss_pred             CC---------CEEEEEEcCC-CeEEEEECCCcEEEEeCCCCcEEEEEe
Q 006825          567 LD---------DVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS  605 (630)
Q Consensus       567 s~---------~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg~~l~t~~  605 (630)
                      +.         ....++|+|. +.++-.-.-..+.|+|++-..|+.++.
T Consensus       221 ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvp  269 (1062)
T KOG1912|consen  221 TSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVP  269 (1062)
T ss_pred             cCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEE
Confidence            10         0234677887 555555567789999999999998887

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=96.19  E-value=0.34  Score=57.59  Aligned_cols=143  Identities=9%  Similarity=0.016  Sum_probs=94.4

Q ss_pred             eEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCC
Q 006825          351 VEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQER  430 (630)
Q Consensus       351 laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~D  430 (630)
                      |........+. --|+++|+.+...+.+....|.  .|.|+.|.-                      ...+...+.|-.+
T Consensus       497 l~~~~~~~~ly-~mDLe~GKVV~eW~~~~~~~v~--~~~p~~K~a----------------------qlt~e~tflGls~  551 (794)
T PF08553_consen  497 LLDPNNPNKLY-KMDLERGKVVEEWKVHDDIPVV--DIAPDSKFA----------------------QLTNEQTFLGLSD  551 (794)
T ss_pred             eecCCCCCceE-EEecCCCcEEEEeecCCCccee--Eeccccccc----------------------ccCCCceEEEECC
Confidence            44555566676 6789999999998843333364  444543311                      1122335777777


Q ss_pred             cEEEEEeCCCCcccceeeee-Ee--cccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceE
Q 006825          431 VRVRQYGKSCKDLTALYKCQ-EI--QAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLL  507 (630)
Q Consensus       431 g~VriWd~~~~el~~~~~v~-tL--~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~  507 (630)
                      ..+..||.+-.. .  .++. .+  ........|++-+.+| +||.|+.+|.|||||- .|...+++    +.+-..+|.
T Consensus       552 n~lfriDpR~~~-~--k~v~~~~k~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~-~g~~AKT~----lp~lG~pI~  622 (794)
T PF08553_consen  552 NSLFRIDPRLSG-N--KLVDSQSKQYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDR-LGKRAKTA----LPGLGDPII  622 (794)
T ss_pred             CceEEeccCCCC-C--ceeeccccccccCCCceEEEecCCc-eEEEEeCCCcEEeecc-cchhhhhc----CCCCCCCee
Confidence            888899876432 1  1111 11  1234567888888787 5889999999999994 45555554    466678999


Q ss_pred             EEEECCCCCEEEEeeCCCee
Q 006825          508 LANGSPEPTSLSPKHLDNHL  527 (630)
Q Consensus       508 svafSpdg~~lasgs~Dg~I  527 (630)
                      .|..+.||++|++.+..-.+
T Consensus       623 ~iDvt~DGkwilaTc~tyLl  642 (794)
T PF08553_consen  623 GIDVTADGKWILATCKTYLL  642 (794)
T ss_pred             EEEecCCCcEEEEeecceEE
Confidence            99999999999887655544

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=96.17  E-value=0.0017  Score=73.04  Aligned_cols=193  Identities=10%  Similarity=0.086  Sum_probs=111.9

Q ss_pred             ceEeecCCCccEecccCCCC-ceeEEecCCccCCEEEEEEcC-CCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEe
Q 006825          350 NVEEGNKDSFDLNNNGSSGG-GMKSKKKGSWFKSIRTVASSV-TGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHG  427 (630)
Q Consensus       350 ~laSgS~D~tvr~vWD~~tG-~~~~~lk~gH~~~V~sVAfSp-dG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sg  427 (630)
                      .++.|..++.|- +=.+... ..-+....+|.+..+++||.+ |-..||.|-+.        |                 
T Consensus        72 IlavG~atG~I~-l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldk--------h-----------------  125 (783)
T KOG1008|consen   72 ILAVGSATGNIS-LLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDK--------H-----------------  125 (783)
T ss_pred             hhhhccccCceE-EeecCCcccccceecccccccccccccccccHHHHHhhhhh--------h-----------------
Confidence            477777777766 3333221 122333347777788888877 44455544111        1                 


Q ss_pred             cCCcEEEEEeCCCCcccceeeeeEecc-cCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccce
Q 006825          428 QERVRVRQYGKSCKDLTALYKCQEIQA-HNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNML  506 (630)
Q Consensus       428 s~Dg~VriWd~~~~el~~~~~v~tL~g-Ht~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V  506 (630)
                      -.|..+.|||..++- +..+....|.+ -.....+++|-.+.++|.+|..-+.++++|++.......      .-.+..+
T Consensus       126 rnds~~~Iwdi~s~l-tvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~------svnTk~v  198 (783)
T KOG1008|consen  126 RNDSSLKIWDINSLL-TVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVS------SVNTKYV  198 (783)
T ss_pred             cccCCccceeccccc-CCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhh------hhhhhhc
Confidence            124558999987651 11111111222 333455888889999999999999999999974322111      1112344


Q ss_pred             EEEEECC-CCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeCCCCceEEeccCC----CCEEEEEEcCC--C
Q 006825          507 LLANGSP-EPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHL----DDVLDLSWSKS--Q  579 (630)
Q Consensus       507 ~svafSp-dg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL~GHs----~~V~sLafSPd--~  579 (630)
                      ..+...| .+.++++- .|+.|.+|+..+.                    -..++..+....    ..+..++|.|.  +
T Consensus       199 qG~tVdp~~~nY~cs~-~dg~iAiwD~~rn--------------------ienpl~~i~~~~N~~~~~l~~~aycPtrtg  257 (783)
T KOG1008|consen  199 QGITVDPFSPNYFCSN-SDGDIAIWDTYRN--------------------IENPLQIILRNENKKPKQLFALAYCPTRTG  257 (783)
T ss_pred             ccceecCCCCCceecc-ccCceeeccchhh--------------------hccHHHHHhhCCCCcccceeeEEeccCCcc
Confidence            5566667 56666555 5888844442110                    123333332222    24899999997  8


Q ss_pred             eEEEEECC-CcEEEEeCC
Q 006825          580 HLLSSSMD-KTVRLWHLS  596 (630)
Q Consensus       580 ~LaSgS~D-gtVrIWDl~  596 (630)
                      +|++...| ++|+++|+.
T Consensus       258 lla~l~RdS~tIrlydi~  275 (783)
T KOG1008|consen  258 LLAVLSRDSITIRLYDIC  275 (783)
T ss_pred             hhhhhccCcceEEEeccc
Confidence            88888876 799999985

>PRK02888 nitrous-oxide reductase; Validated

Probab=96.01  E-value=0.26  Score=56.85  Aligned_cols=133  Identities=15%  Similarity=0.017  Sum_probs=73.0

Q ss_pred             CCccEecccCCC----C-ceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCc
Q 006825          357 DSFDLNNNGSSG----G-GMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERV  431 (630)
Q Consensus       357 D~tvr~vWD~~t----G-~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg  431 (630)
                      +++|. +.|..+    + +.+..+.  =-++.-.|+++|||+++...                            +..+.
T Consensus       295 gn~V~-VID~~t~~~~~~~v~~yIP--VGKsPHGV~vSPDGkylyVa----------------------------nklS~  343 (635)
T PRK02888        295 GSKVP-VVDGRKAANAGSALTRYVP--VPKNPHGVNTSPDGKYFIAN----------------------------GKLSP  343 (635)
T ss_pred             CCEEE-EEECCccccCCcceEEEEE--CCCCccceEECCCCCEEEEe----------------------------CCCCC
Confidence            46677 888887    4 2333222  22344559999999988643                            33344


Q ss_pred             EEEEEeCCCCcc------cc-eeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCC----------ceeeee
Q 006825          432 RVRQYGKSCKDL------TA-LYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVES----------ERKGEL  494 (630)
Q Consensus       432 ~VriWd~~~~el------~~-~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg----------~~~~~l  494 (630)
                      +|-+.|+...+-      .. -..+.+..--.++ .-.+|.++|+...|---|..|-.||+.+.          ..+..+
T Consensus       344 tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlGP-LHTaFDg~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~  422 (635)
T PRK02888        344 TVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLGP-LHTAFDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKL  422 (635)
T ss_pred             cEEEEEChhhhhhhhccCCccceEEEeeccCCCc-ceEEECCCCCEEEeEeecceeEEEehHHHHHHhccccCCcceecc
Confidence            455555433210      00 0011222222222 34678999998888899999999999762          222222


Q ss_pred             ecccccCcccceEEEEECCCCCEEEEe
Q 006825          495 LEKQEDGHLNMLLLANGSPEPTSLSPK  521 (630)
Q Consensus       495 ~~~~~~gh~~~V~svafSpdg~~lasg  521 (630)
                      ......+|......=.-.|+|++|++.
T Consensus       423 dV~y~pgh~~~~~g~t~~~dgk~l~~~  449 (635)
T PRK02888        423 DVHYQPGHNHASMGETKEADGKWLVSL  449 (635)
T ss_pred             cCCCccceeeecCCCcCCCCCCEEEEc
Confidence            222223443332233346788888875

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=95.92  E-value=0.7  Score=56.18  Aligned_cols=109  Identities=17%  Similarity=0.243  Sum_probs=66.6

Q ss_pred             EEEEEccCCCEEEEEe----CC-CcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeC---CCeeeeec
Q 006825          460 WSIKFSLDGRYLASAG----ED-CVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHL---DNHLEKKR  531 (630)
Q Consensus       460 ~sVaFSpDG~~LASgS----~D-gtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~---Dg~I~i~~  531 (630)
                      ..|.|--||+++|+..    .+ ++|+|||-+ |..-..     .....+.-.+++|-|.|..+++-..   |..|    
T Consensus       199 ~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~-----se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~I----  268 (1265)
T KOG1920|consen  199 TSISWRGDGEYFAVSFVESETGTRKIRVYDRE-GALNST-----SEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDI----  268 (1265)
T ss_pred             ceEEEccCCcEEEEEEEeccCCceeEEEeccc-chhhcc-----cCcccccccceeecCCCCeEeeeeecCCCCcE----
Confidence            3688999999999832    34 899999986 432222     1222233457999999999887532   2233    


Q ss_pred             ccccccccccccCccccccEEEeCCCCceEEe----ccCCCCEEEEEEcCC-CeEEE---EECCCcEEEEeCCC
Q 006825          532 RGRSINRKSLSLDHMVVPETVFALSDKPICSF----QGHLDDVLDLSWSKS-QHLLS---SSMDKTVRLWHLSS  597 (630)
Q Consensus       532 ~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL----~GHs~~V~sLafSPd-~~LaS---gS~DgtVrIWDl~t  597 (630)
                                         .+|.-.|-....|    .--..+|..|+|+-+ ..|+.   ......|++|-+.+
T Consensus       269 -------------------vffErNGL~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~N  323 (1265)
T KOG1920|consen  269 -------------------VFFERNGLRHGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGN  323 (1265)
T ss_pred             -------------------EEEecCCccccccccCCcccccchheeeecCCCCceeeeecccccceEEEEEecC
Confidence                               3444444332222    222334788999887 66664   33344488887765

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.82  E-value=0.9  Score=53.53  Aligned_cols=201  Identities=8%  Similarity=0.010  Sum_probs=121.2

Q ss_pred             ceEeecCCCccEecccCCCCcee-EEecCCccCCEEEEEEcCCC-CeEEeecCCCCCccccCCcceEEEeecCCCeEEEe
Q 006825          350 NVEEGNKDSFDLNNNGSSGGGMK-SKKKGSWFKSIRTVASSVTG-HKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHG  427 (630)
Q Consensus       350 ~laSgS~D~tvr~vWD~~tG~~~-~~lk~gH~~~V~sVAfSpdG-~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sg  427 (630)
                      .+|-|++|+.|-   -+..+... +-++ .|...|...-+.-++ .+|++-..|..                        
T Consensus        37 ~vvigt~~G~V~---~Ln~s~~~~~~fq-a~~~siv~~L~~~~~~~~L~sv~Ed~~------------------------   88 (933)
T KOG2114|consen   37 SVVIGTADGRVV---ILNSSFQLIRGFQ-AYEQSIVQFLYILNKQNFLFSVGEDEQ------------------------   88 (933)
T ss_pred             eEEEeeccccEE---Eecccceeeehhe-ecchhhhhHhhcccCceEEEEEeecCC------------------------
Confidence            567788888754   44444444 6666 555553222222232 34554433320                        


Q ss_pred             cCCcEEEEEeCCCCcccc-eeee--eEecc-----cCcCEEEEEEccCCCEEEEEeCCCcEEEEEC--cCCceeeeeecc
Q 006825          428 QERVRVRQYGKSCKDLTA-LYKC--QEIQA-----HNGSIWSIKFSLDGRYLASAGEDCVIHVWQV--VESERKGELLEK  497 (630)
Q Consensus       428 s~Dg~VriWd~~~~el~~-~~~v--~tL~g-----Ht~~V~sVaFSpDG~~LASgS~DgtIrVWDl--~tg~~~~~l~~~  497 (630)
                      +.-..|++|+..-.+... ..++  +.+..     ...++.+++.+.+=+.+|.|=.+|.|..+.-  ....-.+.-   
T Consensus        89 ~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~---  165 (933)
T KOG2114|consen   89 GNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQD---  165 (933)
T ss_pred             CCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhcccccee---
Confidence            011268999876442222 2233  22223     2457899999999999999999999998842  111111111   


Q ss_pred             cccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeCCCCc--eEEeccCCCCEEEEEE
Q 006825          498 QEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKP--ICSFQGHLDDVLDLSW  575 (630)
Q Consensus       498 ~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~--l~tL~GHs~~V~sLaf  575 (630)
                      ....-..+|+.+++..+++.++.......|                       .+|.++|+.  ++.+..|...+.|.+|
T Consensus       166 ~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V-----------------------~~y~l~gr~p~~~~ld~~G~~lnCss~  222 (933)
T KOG2114|consen  166 YSHRGKEPITGLALRSDGKSVLFVATTEQV-----------------------MLYSLSGRTPSLKVLDNNGISLNCSSF  222 (933)
T ss_pred             eeccCCCCceeeEEecCCceeEEEEeccee-----------------------EEEEecCCCcceeeeccCCccceeeec
Confidence            012334689999998888774444455555                       677776665  6668888899999999


Q ss_pred             cCC-CeEEEEECCCcEEEEeCCCCcEEEEEe
Q 006825          576 SKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS  605 (630)
Q Consensus       576 SPd-~~LaSgS~DgtVrIWDl~tg~~l~t~~  605 (630)
                      ++. ..|+.++ +..|.+|+......-.+|.
T Consensus       223 ~~~t~qfIca~-~e~l~fY~sd~~~~cfaf~  252 (933)
T KOG2114|consen  223 SDGTYQFICAG-SEFLYFYDSDGRGPCFAFE  252 (933)
T ss_pred             CCCCccEEEec-CceEEEEcCCCcceeeeec
Confidence            987 5344444 3468999988655555554

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=95.81  E-value=1.6  Score=47.81  Aligned_cols=133  Identities=11%  Similarity=-0.022  Sum_probs=75.4

Q ss_pred             EEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccCcc
Q 006825          424 SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHL  503 (630)
Q Consensus       424 l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~  503 (630)
                      ++.++.++.+..+|..+++..     ...  .......+.  ..+..|+.++.|+.|..+|..+|+.+.....   ..+ 
T Consensus       259 vy~~~~~g~l~ald~~tG~~~-----W~~--~~~~~~~~~--~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~---~~~-  325 (394)
T PRK11138        259 VYALAYNGNLVALDLRSGQIV-----WKR--EYGSVNDFA--VDGGRIYLVDQNDRVYALDTRGGVELWSQSD---LLH-  325 (394)
T ss_pred             EEEEEcCCeEEEEECCCCCEE-----Eee--cCCCccCcE--EECCEEEEEcCCCeEEEEECCCCcEEEcccc---cCC-
Confidence            566667888888888777521     111  111111222  2466677788999999999999876543210   011 


Q ss_pred             cceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeC-CCCceEEeccCCCCEEE-EEEcCCCeE
Q 006825          504 NMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLD-LSWSKSQHL  581 (630)
Q Consensus       504 ~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL~GHs~~V~s-LafSPd~~L  581 (630)
                      ........  .+.+++.+..++.+                       .+.+. +|+.+..+.-+...+.. ..+ .++.|
T Consensus       326 ~~~~sp~v--~~g~l~v~~~~G~l-----------------------~~ld~~tG~~~~~~~~~~~~~~s~P~~-~~~~l  379 (394)
T PRK11138        326 RLLTAPVL--YNGYLVVGDSEGYL-----------------------HWINREDGRFVAQQKVDSSGFLSEPVV-ADDKL  379 (394)
T ss_pred             CcccCCEE--ECCEEEEEeCCCEE-----------------------EEEECCCCCEEEEEEcCCCcceeCCEE-ECCEE
Confidence            01111111  13455667778877                       45555 66666665433222322 122 23788


Q ss_pred             EEEECCCcEEEEeC
Q 006825          582 LSSSMDKTVRLWHL  595 (630)
Q Consensus       582 aSgS~DgtVrIWDl  595 (630)
                      +.++.||.|..++.
T Consensus       380 ~v~t~~G~l~~~~~  393 (394)
T PRK11138        380 LIQARDGTVYAITR  393 (394)
T ss_pred             EEEeCCceEEEEeC
Confidence            88999999988764

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=95.49  E-value=0.54  Score=42.64  Aligned_cols=99  Identities=13%  Similarity=0.160  Sum_probs=66.4

Q ss_pred             EEEEEEcc---CC-CEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccc
Q 006825          459 IWSIKFSL---DG-RYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGR  534 (630)
Q Consensus       459 V~sVaFSp---DG-~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~  534 (630)
                      |.+|++..   || +.|+.|++|..||||+-.  +.+.++      .-...|..+.-... ..++.+..+|+|-+++...
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei------~e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~   72 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEI------TETDKVTSLCSLGG-GRFAYALANGTVGVYDRSQ   72 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEE------ecccceEEEEEcCC-CEEEEEecCCEEEEEeCcc
Confidence            56777665   33 479999999999999854  444443      22345666666555 5688889999997776544


Q ss_pred             cccccccccCccccccEEEeCCCCceEEeccCCCCEEEEEEcC---C--CeEEEEECCCcEE
Q 006825          535 SINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSK---S--QHLLSSSMDKTVR  591 (630)
Q Consensus       535 ~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL~GHs~~V~sLafSP---d--~~LaSgS~DgtVr  591 (630)
                                      ++|.+..+         ..++++++..   +  .-|++|-.+|.|-
T Consensus        73 ----------------RlWRiKSK---------~~~~~~~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   73 ----------------RLWRIKSK---------NQVTSMAFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             ----------------eeeeeccC---------CCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence                            77776422         1255665543   2  4788998888764

>PRK13616 lipoprotein LpqB; Provisional

Probab=95.35  E-value=1.1  Score=52.20  Aligned_cols=188  Identities=12%  Similarity=0.053  Sum_probs=96.5

Q ss_pred             ccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcC
Q 006825          379 WFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGS  458 (630)
Q Consensus       379 H~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~  458 (630)
                      ....+.+.++||+|+.++....               ..+..      ......|++++... +.     ...+.+.  .
T Consensus       348 ~~~~vsspaiSpdG~~vA~v~~---------------~~~~~------~d~~s~Lwv~~~gg-~~-----~~lt~g~--~  398 (591)
T PRK13616        348 QMGNITSAALSRSGRQVAAVVT---------------LGRGA------PDPASSLWVGPLGG-VA-----VQVLEGH--S  398 (591)
T ss_pred             cccCcccceECCCCCEEEEEEe---------------ecCCC------CCcceEEEEEeCCC-cc-----eeeecCC--C
Confidence            3446778999999987763210               00000      01233566666422 11     1123333  3


Q ss_pred             EEEEEEccCCCEEEEEeCC-CcEEEEECcCCceeeeeecc--ccc-CcccceEEEEECCCCCEEEEeeCCCeeeeecccc
Q 006825          459 IWSIKFSLDGRYLASAGED-CVIHVWQVVESERKGELLEK--QED-GHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGR  534 (630)
Q Consensus       459 V~sVaFSpDG~~LASgS~D-gtIrVWDl~tg~~~~~l~~~--~~~-gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~  534 (630)
                      .+.-.|+|||+.|++.... ..+++.+-.....+..+...  ... .....|..+.|+|||..++... ++.|.+-    
T Consensus       399 ~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~~~~g~Issl~wSpDG~RiA~i~-~g~v~Va----  473 (591)
T PRK13616        399 LTRPSWSLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVASRVPGPISELQLSRDGVRAAMII-GGKVYLA----  473 (591)
T ss_pred             CCCceECCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhhccCCCcCeEEECCCCCEEEEEE-CCEEEEE----
Confidence            7888999999988887643 23334333221122111100  000 2235699999999999988765 3555221    


Q ss_pred             cccccccccCccccccEEEeC-CCC-----ceEEeccCCCCEEEEEEcCCCeEEEEECCCcEEEEeCCC-CcEEEEEe--
Q 006825          535 SINRKSLSLDHMVVPETVFAL-SDK-----PICSFQGHLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSS-KTCLKIFS--  605 (630)
Q Consensus       535 ~~~~~s~s~d~~i~~~~Vwdl-sgk-----~l~tL~GHs~~V~sLafSPd~~LaSgS~DgtVrIWDl~t-g~~l~t~~--  605 (630)
                                      .|-.. .|+     ++....+-...+.++.|.++..|+.+..++...+|.+.- |.....+.  
T Consensus       474 ----------------~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~V~~~~~~~~v~~v~vDG~~~~~~~~~  537 (591)
T PRK13616        474 ----------------VVEQTEDGQYALTNPREVGPGLGDTAVSLDWRTGDSLVVGRSDPEHPVWYVNLDGSNSDALPSR  537 (591)
T ss_pred             ----------------EEEeCCCCceeecccEEeecccCCccccceEecCCEEEEEecCCCCceEEEecCCccccccCCC
Confidence                            11111 221     111112233446889999995455665555555666542 32222223  


Q ss_pred             -cCCceEEEE-cC
Q 006825          606 -HSDYDISLV-DR  616 (630)
Q Consensus       606 -H~~~V~sVa-s~  616 (630)
                       ....|..|+ .+
T Consensus       538 n~~~~v~~vaa~~  550 (591)
T PRK13616        538 NLSAPVVAVAASP  550 (591)
T ss_pred             CccCceEEEecCC
Confidence             366777788 44

>PRK02888 nitrous-oxide reductase; Validated

Probab=95.16  E-value=2.1  Score=49.60  Aligned_cols=141  Identities=9%  Similarity=-0.003  Sum_probs=79.2

Q ss_pred             cCCCEEEEEeCCCcEEEEECcC----C-ceeeeeecccccCcccceEEEEECCCCCEEEEee-CCCeeeeeccccccccc
Q 006825          466 LDGRYLASAGEDCVIHVWQVVE----S-ERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKH-LDNHLEKKRRGRSINRK  539 (630)
Q Consensus       466 pDG~~LASgS~DgtIrVWDl~t----g-~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs-~Dg~I~i~~~~~~~~~~  539 (630)
                      ++|++...  .+++|.+.|..+    + ..+..+.      .......++++|||++++.++ .+.++-+.+..+.....
T Consensus       286 kdGK~~~V--~gn~V~VID~~t~~~~~~~v~~yIP------VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~  357 (635)
T PRK02888        286 KAGKFKTI--GGSKVPVVDGRKAANAGSALTRYVP------VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLF  357 (635)
T ss_pred             hCCCEEEE--CCCEEEEEECCccccCCcceEEEEE------CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhh
Confidence            36665554  357899999887    2 3333332      224456799999999887764 35566433332211100


Q ss_pred             ccccCccccccEEEeCCCCceEEeccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCC----------CcEEEEEe-cC
Q 006825          540 SLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSS----------KTCLKIFS-HS  607 (630)
Q Consensus       540 s~s~d~~i~~~~Vwdlsgk~l~tL~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~t----------g~~l~t~~-H~  607 (630)
                          +..+      +.....+.+.+- ...-...+|.++ ..+.|-..|..|-.||+.+          ...+..+. |-
T Consensus       358 ----~~~~------~~~~~vvaevev-GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y  426 (635)
T PRK02888        358 ----DGKI------KPRDAVVAEPEL-GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHY  426 (635)
T ss_pred             ----hccC------CccceEEEeecc-CCCcceEEECCCCCEEEeEeecceeEEEehHHHHHHhccccCCcceecccCCC
Confidence                0000      011112222221 112256788888 7777888899999999986          33445454 44


Q ss_pred             CceEEEE------cCCCcEEEEec
Q 006825          608 DYDISLV------DRLMLRFAYGA  625 (630)
Q Consensus       608 ~~V~sVa------s~~~~~lAsgs  625 (630)
                      ..-.-.+      .+++.++.+..
T Consensus       427 ~pgh~~~~~g~t~~~dgk~l~~~n  450 (635)
T PRK02888        427 QPGHNHASMGETKEADGKWLVSLN  450 (635)
T ss_pred             ccceeeecCCCcCCCCCCEEEEcc
Confidence            4433333      77888887764

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=95.11  E-value=0.21  Score=56.05  Aligned_cols=121  Identities=13%  Similarity=0.137  Sum_probs=82.7

Q ss_pred             EEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccc
Q 006825          459 IWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINR  538 (630)
Q Consensus       459 V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~  538 (630)
                      =+-+.|||-|.||+|--.-| |.+|--..-..++.+      .| ..|..+.|||..+||++=+..-.+.-|....    
T Consensus       213 etyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF------~H-p~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e----  280 (698)
T KOG2314|consen  213 ETYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRF------YH-PGVQFIDFSPNEKYLVTYSPEPIIVEEDDNE----  280 (698)
T ss_pred             eeeEEecCCceEEEEEeccc-eeeecCccHHHHHhc------cC-CCceeeecCCccceEEEecCCccccCcccCC----
Confidence            45689999999999988765 889976665555553      33 4577899999999999876544432222111    


Q ss_pred             cccccCccccccEEEeC-CCCceEEeccCCC--CE-EEEEEcCC-CeEEEEECCCcEEEEeCCCCcE
Q 006825          539 KSLSLDHMVVPETVFAL-SDKPICSFQGHLD--DV-LDLSWSKS-QHLLSSSMDKTVRLWHLSSKTC  600 (630)
Q Consensus       539 ~s~s~d~~i~~~~Vwdl-sgk~l~tL~GHs~--~V-~sLafSPd-~~LaSgS~DgtVrIWDl~tg~~  600 (630)
                              -....|||+ +|...+.|..-..  .+ .-..||.| +|+|--.. .+|.|++..+-.+
T Consensus       281 --------~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~l  338 (698)
T KOG2314|consen  281 --------GQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFML  338 (698)
T ss_pred             --------CceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCceee
Confidence                    011179999 8888888765322  22 33678998 88886665 5689998876433

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=95.03  E-value=0.092  Score=59.60  Aligned_cols=88  Identities=16%  Similarity=0.131  Sum_probs=66.2

Q ss_pred             cceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeCCCCceEEeccCCCCEE-EEEEcCC-CeE
Q 006825          504 NMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVL-DLSWSKS-QHL  581 (630)
Q Consensus       504 ~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL~GHs~~V~-sLafSPd-~~L  581 (630)
                      ..+..+.|+|.-.+||.+..+|.+-+...+               ++++|.+        .-|...|+ +++|.|| ++|
T Consensus        21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n---------------~qRlwti--------p~p~~~v~~sL~W~~DGkll   77 (665)
T KOG4640|consen   21 INIKRIEWNPKMDLIATRTEKGELLIHRLN---------------WQRLWTI--------PIPGENVTASLCWRPDGKLL   77 (665)
T ss_pred             cceEEEEEcCccchhheeccCCcEEEEEec---------------cceeEec--------cCCCCccceeeeecCCCCEE
Confidence            457789999999999999999977433322               1255554        44555565 9999999 999


Q ss_pred             EEEECCCcEEEEeCCCCcEEEEE--ecCCceEEEE
Q 006825          582 LSSSMDKTVRLWHLSSKTCLKIF--SHSDYDISLV  614 (630)
Q Consensus       582 aSgS~DgtVrIWDl~tg~~l~t~--~H~~~V~sVa  614 (630)
                      |.|-.||+|+|-|+.++..+..+  .-...|.++.
T Consensus        78 aVg~kdG~I~L~Dve~~~~l~~~~~s~e~~is~~~  112 (665)
T KOG4640|consen   78 AVGFKDGTIRLHDVEKGGRLVSFLFSVETDISKGI  112 (665)
T ss_pred             EEEecCCeEEEEEccCCCceeccccccccchheee
Confidence            99999999999999999988873  3445555544

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=94.69  E-value=0.12  Score=59.47  Aligned_cols=112  Identities=11%  Similarity=0.056  Sum_probs=82.3

Q ss_pred             EeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeee
Q 006825          416 ATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELL  495 (630)
Q Consensus       416 a~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~  495 (630)
                      |++-+...++-|+..|.+.+|.-.+++.    ..+...+-++.+..+..|++..++|.|+..|.|.|+.+..+......+
T Consensus        40 c~dst~~~l~~GsS~G~lyl~~R~~~~~----~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~  115 (726)
T KOG3621|consen   40 CVDATEEYLAMGSSAGSVYLYNRHTGEM----RKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDY  115 (726)
T ss_pred             EeecCCceEEEecccceEEEEecCchhh----hcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCccee
Confidence            3333444467778888999998877654    233344566778888999999999999999999999988754333322


Q ss_pred             -cccccCcccceEEEEECCCCCEEEEeeCCCeeeeec
Q 006825          496 -EKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKR  531 (630)
Q Consensus       496 -~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~  531 (630)
                       ......|...|++++|+++++.+.+|-..|+|....
T Consensus       116 ~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~  152 (726)
T KOG3621|consen  116 VTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTE  152 (726)
T ss_pred             eccccccCCceEEEEEecccccEEeecCCCceEEEEE
Confidence             222344788999999999999999998888775443

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=94.57  E-value=1.5  Score=48.98  Aligned_cols=177  Identities=16%  Similarity=0.096  Sum_probs=97.9

Q ss_pred             CceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceee
Q 006825          369 GGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYK  448 (630)
Q Consensus       369 G~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~  448 (630)
                      |.-.+.+. .-...+..-+|+|+|+.++--+                         +.......+.+++..+++..   .
T Consensus       182 g~~~~~l~-~~~~~~~~p~ws~~~~~~~y~~-------------------------f~~~~~~~i~~~~l~~g~~~---~  232 (425)
T COG0823         182 GYNQQKLT-DSGSLILTPAWSPDGKKLAYVS-------------------------FELGGCPRIYYLDLNTGKRP---V  232 (425)
T ss_pred             CcceeEec-ccCcceeccccCcCCCceEEEE-------------------------EecCCCceEEEEeccCCccc---e
Confidence            55555555 4555667778888887765321                         11111146888888776532   2


Q ss_pred             eeEecccCcCEEEEEEccCCCEEEE-EeCCCcEEE--EECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCC
Q 006825          449 CQEIQAHNGSIWSIKFSLDGRYLAS-AGEDCVIHV--WQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDN  525 (630)
Q Consensus       449 v~tL~gHt~~V~sVaFSpDG~~LAS-gS~DgtIrV--WDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg  525 (630)
                      +..+.+|.   ..-+|+|||++|+- ...|+...|  .|+..+... .|     ..-.+.-..-.|+|||+.|+..+..+
T Consensus       233 i~~~~g~~---~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~-~L-----t~~~gi~~~Ps~spdG~~ivf~Sdr~  303 (425)
T COG0823         233 ILNFNGNN---GAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLP-RL-----TNGFGINTSPSWSPDGSKIVFTSDRG  303 (425)
T ss_pred             eeccCCcc---CCccCCCCCCEEEEEECCCCCccEEEEcCCCCcce-ec-----ccCCccccCccCCCCCCEEEEEeCCC
Confidence            33345554   46789999987655 456776555  566655522 22     22222223667899999998875443


Q ss_pred             -eeeeecccccccccccccCccccccEEEeCCCCceEEeccCCCCEEEEEEcCC-CeEEEEEC-CCc--EEEEeCCCCcE
Q 006825          526 -HLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSM-DKT--VRLWHLSSKTC  600 (630)
Q Consensus       526 -~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL~GHs~~V~sLafSPd-~~LaSgS~-Dgt--VrIWDl~tg~~  600 (630)
                       .-.+                     .+.+..+.....+.-....-..-.|+|| .+|+..+. +|.  |-+.|+.++.-
T Consensus       304 G~p~I---------------------~~~~~~g~~~~riT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~  362 (425)
T COG0823         304 GRPQI---------------------YLYDLEGSQVTRLTFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGK  362 (425)
T ss_pred             CCcce---------------------EEECCCCCceeEeeccCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCc
Confidence             2211                     2233344433333322222226778999 77765553 344  56666655543


Q ss_pred             EEEE
Q 006825          601 LKIF  604 (630)
Q Consensus       601 l~t~  604 (630)
                      ++.+
T Consensus       363 ~~~l  366 (425)
T COG0823         363 IRIL  366 (425)
T ss_pred             EEEc
Confidence            4443

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.43  E-value=1.4  Score=49.64  Aligned_cols=146  Identities=10%  Similarity=0.020  Sum_probs=99.3

Q ss_pred             ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecC
Q 006825          350 NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQE  429 (630)
Q Consensus       350 ~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~  429 (630)
                      .+.++..-..+. -=|+++|+.+...+ -|.. |.-+-+.|+++.-                      ...+...+.|-.
T Consensus       348 il~~~~~~~~l~-klDIE~GKIVeEWk-~~~d-i~mv~~t~d~K~~----------------------Ql~~e~TlvGLs  402 (644)
T KOG2395|consen  348 ILMDGGEQDKLY-KLDIERGKIVEEWK-FEDD-INMVDITPDFKFA----------------------QLTSEQTLVGLS  402 (644)
T ss_pred             EeeCCCCcCcce-eeecccceeeeEee-ccCC-cceeeccCCcchh----------------------cccccccEEeec
Confidence            466676666666 66899999999888 4555 7778888876521                      112233466777


Q ss_pred             CcEEEEEeCCCCcccceeeeeEecccC----cCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccc
Q 006825          430 RVRVRQYGKSCKDLTALYKCQEIQAHN----GSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNM  505 (630)
Q Consensus       430 Dg~VriWd~~~~el~~~~~v~tL~gHt----~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~  505 (630)
                      +..|..||.+.....   .+..-++|.    ....|.+-..+| ++|.||.+|.|||||- .+.+.++.    +.+-..+
T Consensus       403 ~n~vfriDpRv~~~~---kl~~~q~kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdr-i~~~AKTA----lPgLG~~  473 (644)
T KOG2395|consen  403 DNSVFRIDPRVQGKN---KLAVVQSKQYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDR-IGRRAKTA----LPGLGDA  473 (644)
T ss_pred             CCceEEecccccCcc---eeeeeeccccccccccceeeecCCc-eEEEeecCCcEEeehh-hhhhhhhc----ccccCCc
Confidence            888999987643321   122233443    234555555555 6889999999999997 56665554    4777789


Q ss_pred             eEEEEECCCCCEEEEeeCCCeeee
Q 006825          506 LLLANGSPEPTSLSPKHLDNHLEK  529 (630)
Q Consensus       506 V~svafSpdg~~lasgs~Dg~I~i  529 (630)
                      |..|..+.+|++|++.+..-.+.+
T Consensus       474 I~hVdvtadGKwil~Tc~tyLlLi  497 (644)
T KOG2395|consen  474 IKHVDVTADGKWILATCKTYLLLI  497 (644)
T ss_pred             eeeEEeeccCcEEEEecccEEEEE
Confidence            999999999999888755544433

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=94.21  E-value=0.016  Score=65.52  Aligned_cols=143  Identities=13%  Similarity=0.095  Sum_probs=94.2

Q ss_pred             EEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEcc-CCCEEEEEe----CCCcEEEEECcCCce--eeeeec
Q 006825          424 SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSL-DGRYLASAG----EDCVIHVWQVVESER--KGELLE  496 (630)
Q Consensus       424 l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSp-DG~~LASgS----~DgtIrVWDl~tg~~--~~~l~~  496 (630)
                      ++.|..+|.|-+-....+...   ......+|....++++|++ |..+||.|-    .|-.++|||+.++-.  ..... 
T Consensus        73 lavG~atG~I~l~s~r~~hdS---s~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~-  148 (783)
T KOG1008|consen   73 LAVGSATGNISLLSVRHPHDS---SAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPL-  148 (783)
T ss_pred             hhhccccCceEEeecCCcccc---cceecccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCccccc-
Confidence            677778888888776554332   1234578999999999999 777888762    456799999987622  11110 


Q ss_pred             ccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeCCCCceEEeccCCCCEEEEEEc
Q 006825          497 KQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWS  576 (630)
Q Consensus       497 ~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL~GHs~~V~sLafS  576 (630)
                       -..+......+++|-.+.+++.+|.....+                       .++++...+.....-.+..|..+...
T Consensus       149 -fs~~~l~gqns~cwlrd~klvlaGm~sr~~-----------------------~ifdlRqs~~~~~svnTk~vqG~tVd  204 (783)
T KOG1008|consen  149 -FSSSTLDGQNSVCWLRDTKLVLAGMTSRSV-----------------------HIFDLRQSLDSVSSVNTKYVQGITVD  204 (783)
T ss_pred             -cccccccCccccccccCcchhhcccccchh-----------------------hhhhhhhhhhhhhhhhhhhcccceec
Confidence             011233445578888888888888877777                       55555333322222234456667777


Q ss_pred             C-C-CeEEEEECCCcEEEEeC
Q 006825          577 K-S-QHLLSSSMDKTVRLWHL  595 (630)
Q Consensus       577 P-d-~~LaSgS~DgtVrIWDl  595 (630)
                      | . +|+++-. |+.|-|||.
T Consensus       205 p~~~nY~cs~~-dg~iAiwD~  224 (783)
T KOG1008|consen  205 PFSPNYFCSNS-DGDIAIWDT  224 (783)
T ss_pred             CCCCCceeccc-cCceeeccc
Confidence            7 4 7888777 999999993

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=94.11  E-value=0.21  Score=56.80  Aligned_cols=64  Identities=17%  Similarity=0.119  Sum_probs=50.8

Q ss_pred             EEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEE-EEEEccCCCEEEEEeCCCcEEEEECcCCceeee
Q 006825          424 SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIW-SIKFSLDGRYLASAGEDCVIHVWQVVESERKGE  493 (630)
Q Consensus       424 l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~-sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~  493 (630)
                      +|.+..+|.|.+......      .+.++.-|...|+ +++|.|||++||.|=.||+|++-|++++..+..
T Consensus        35 iA~~t~~gelli~R~n~q------Rlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~   99 (665)
T KOG4640|consen   35 IATRTEKGELLIHRLNWQ------RLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVS   99 (665)
T ss_pred             hheeccCCcEEEEEeccc------eeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCceec
Confidence            666777777777665422      3556665666676 999999999999999999999999999987766

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=93.96  E-value=1.1  Score=53.19  Aligned_cols=135  Identities=12%  Similarity=0.041  Sum_probs=91.8

Q ss_pred             EEeec--ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCC--------------CCc---
Q 006825          345 LMRRQ--NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDER--------------DTS---  405 (630)
Q Consensus       345 Lafs~--~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~--------------dt~---  405 (630)
                      +|+..  ++..|..-++|. +-|..+-+.++++. .|.+.|  .+|...|++|++.+.-.              |..   
T Consensus       182 imR~Nnr~lf~G~t~G~V~-LrD~~s~~~iht~~-aHs~si--SDfDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmr  257 (1118)
T KOG1275|consen  182 IMRYNNRNLFCGDTRGTVF-LRDPNSFETIHTFD-AHSGSI--SDFDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMR  257 (1118)
T ss_pred             EEEecCcEEEeecccceEE-eecCCcCceeeeee-ccccce--eeeeccCCeEEEeecccccccccccchhhhhhhhhhh
Confidence            45544  788999999999 99999999999999 999999  68999999999976543              100   


Q ss_pred             -----cccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcE
Q 006825          406 -----SEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVI  480 (630)
Q Consensus       406 -----s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtI  480 (630)
                           ...-....+....--...++..+..|...+-|..+-.... .-++.+.--...|.++++++.|+.||-|-.+|.|
T Consensus       258 al~PI~~~~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~-~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v  336 (1118)
T KOG1275|consen  258 ALSPIQFPYGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPP-AGVKMVNPNGSGISAFDISSNGDALAFGDHEGHV  336 (1118)
T ss_pred             ccCCcccccCchhhhhcccccceEEEEecccceeeccccccCCCc-cceeEEccCCCcceeEEecCCCceEEEecccCcE
Confidence                 0111112222222222336777777888877732211100 0112223334459999999999999999999999


Q ss_pred             EEEE
Q 006825          481 HVWQ  484 (630)
Q Consensus       481 rVWD  484 (630)
                      .+|-
T Consensus       337 ~~wa  340 (1118)
T KOG1275|consen  337 NLWA  340 (1118)
T ss_pred             eeec
Confidence            9997

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=93.92  E-value=0.2  Score=57.66  Aligned_cols=122  Identities=16%  Similarity=0.155  Sum_probs=85.9

Q ss_pred             cCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccc
Q 006825          455 HNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGR  534 (630)
Q Consensus       455 Ht~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~  534 (630)
                      |...|.--+++..+++|+-|+.-|.+.+++-..++....-    ..+....+..+..+++..++|.|+..+.|.+.....
T Consensus        32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~----~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~  107 (726)
T KOG3621|consen   32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLK----NEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNK  107 (726)
T ss_pred             CcceEEEEEeecCCceEEEecccceEEEEecCchhhhccc----ccCccceEEEEEecchhHhhhhhcCCceEEeehhhc
Confidence            4455666667778999999999999999998766543321    234455666778898999999998889884433322


Q ss_pred             cccccccccCccccccEEEeCCCCceEEe-ccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCC
Q 006825          535 SINRKSLSLDHMVVPETVFALSDKPICSF-QGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSS  597 (630)
Q Consensus       535 ~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL-~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~t  597 (630)
                      ...     .+      .      ..+..+ +.|...|++++|+++ ..|.+|-.-|+|.+-.+.+
T Consensus       108 ~~p-----~~------~------~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s  155 (726)
T KOG3621|consen  108 ELP-----RD------L------DYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS  155 (726)
T ss_pred             cCC-----Cc------c------eeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence            000     00      0      001111 237889999999999 9999999999999988877

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=93.92  E-value=3.2  Score=43.66  Aligned_cols=191  Identities=10%  Similarity=0.048  Sum_probs=106.4

Q ss_pred             cccCCCCceeEEecC---CccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCcEEEEEeCC
Q 006825          363 NNGSSGGGMKSKKKG---SWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKS  439 (630)
Q Consensus       363 vWD~~tG~~~~~lk~---gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~  439 (630)
                      +.|..++++..++..   .|.-.  -=.|||||.+|...-.|-                        -...|.|-+||..
T Consensus        95 vfD~~~~~~pv~~~s~~~RHfyG--HGvfs~dG~~LYATEndf------------------------d~~rGViGvYd~r  148 (366)
T COG3490          95 VFDPNGAQEPVTLVSQEGRHFYG--HGVFSPDGRLLYATENDF------------------------DPNRGVIGVYDAR  148 (366)
T ss_pred             EECCCCCcCcEEEecccCceeec--ccccCCCCcEEEeecCCC------------------------CCCCceEEEEecc
Confidence            777777776655531   12211  137999999886543331                        1346678899886


Q ss_pred             CCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEE--------------------EECcCCceeeeeecccc
Q 006825          440 CKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHV--------------------WQVVESERKGELLEKQE  499 (630)
Q Consensus       440 ~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrV--------------------WDl~tg~~~~~l~~~~~  499 (630)
                      .+    +..+.++..|--.--.|.+.+||+.|+.+.  |-|..                    -|..+|+.+.+.. .+.
T Consensus       149 ~~----fqrvgE~~t~GiGpHev~lm~DGrtlvvan--GGIethpdfgR~~lNldsMePSlvlld~atG~liekh~-Lp~  221 (366)
T COG3490         149 EG----FQRVGEFSTHGIGPHEVTLMADGRTLVVAN--GGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHT-LPA  221 (366)
T ss_pred             cc----cceecccccCCcCcceeEEecCCcEEEEeC--CceecccccCccccchhhcCccEEEEeccccchhhhcc-Cch
Confidence            33    345667777776677899999999988764  32333                    3333333332211 011


Q ss_pred             cCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeC-CCCceEEec-------cCCCCEE
Q 006825          500 DGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQ-------GHLDDVL  571 (630)
Q Consensus       500 ~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL~-------GHs~~V~  571 (630)
                      ..+.-.+.-++.-+||+.++.+-.-|.-      .            -.|..+=.. .|+++.-+.       .-...|-
T Consensus       222 ~l~~lSiRHld~g~dgtvwfgcQy~G~~------~------------d~ppLvg~~~~g~~l~~~~~pee~~~~~anYig  283 (366)
T COG3490         222 SLRQLSIRHLDIGRDGTVWFGCQYRGPR------N------------DLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIG  283 (366)
T ss_pred             hhhhcceeeeeeCCCCcEEEEEEeeCCC------c------------cCCcceeeccCCCcCcccCCCHHHHHHHHhhhh
Confidence            1334456667777777665554222211      0            000011111 233333322       2335677


Q ss_pred             EEEEcCC-CeEEEEE-CCCcEEEEeCCCCcEEEEE
Q 006825          572 DLSWSKS-QHLLSSS-MDKTVRLWHLSSKTCLKIF  604 (630)
Q Consensus       572 sLafSPd-~~LaSgS-~DgtVrIWDl~tg~~l~t~  604 (630)
                      +|+.+.+ ++++..| .-+..-|||..+|..+..-
T Consensus       284 siA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~a  318 (366)
T COG3490         284 SIAANRRDGLVALTSPRGNRAVIWDAATGAVVSEA  318 (366)
T ss_pred             heeecccCCeEEEecCCCCeEEEEEcCCCcEEecc
Confidence            8888876 6665444 5566789999999877644

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=93.90  E-value=0.096  Score=56.65  Aligned_cols=78  Identities=12%  Similarity=-0.020  Sum_probs=62.8

Q ss_pred             eeEecccCcCEEEEEEccCCC-EEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCC-CEEEEeeCCCe
Q 006825          449 CQEIQAHNGSIWSIKFSLDGR-YLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEP-TSLSPKHLDNH  526 (630)
Q Consensus       449 v~tL~gHt~~V~sVaFSpDG~-~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg-~~lasgs~Dg~  526 (630)
                      .+.+.+|...|..|+|||..+ +|..++.+.+|+|.|+++...+...     ..+ ..+++++|.-+. .+|..|-..|.
T Consensus       186 sq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy-----~a~-~~~wSC~wDlde~h~IYaGl~nG~  259 (463)
T KOG1645|consen  186 SQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSY-----IAY-NQIWSCCWDLDERHVIYAGLQNGM  259 (463)
T ss_pred             hhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeehe-----ecc-CCceeeeeccCCcceeEEeccCce
Confidence            456788999999999999777 8889999999999999998777663     445 789999998874 55666777788


Q ss_pred             eeeecc
Q 006825          527 LEKKRR  532 (630)
Q Consensus       527 I~i~~~  532 (630)
                      |.+++.
T Consensus       260 VlvyD~  265 (463)
T KOG1645|consen  260 VLVYDM  265 (463)
T ss_pred             EEEEEc
Confidence            854443

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=93.50  E-value=9  Score=42.52  Aligned_cols=39  Identities=8%  Similarity=0.003  Sum_probs=32.4

Q ss_pred             CCCEEEEEEcCC-CeEEEEECCCcEEEEeCCCCcEEEEEe
Q 006825          567 LDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS  605 (630)
Q Consensus       567 s~~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg~~l~t~~  605 (630)
                      .++|..++.||+ ++||--..+|++.|....-.+++..+.
T Consensus       216 ~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~  255 (410)
T PF04841_consen  216 DGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFD  255 (410)
T ss_pred             CCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEee
Confidence            357999999999 889988889999999877667766665

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=93.47  E-value=6.4  Score=41.71  Aligned_cols=153  Identities=9%  Similarity=0.003  Sum_probs=86.1

Q ss_pred             cEEEEEeCCCC-c-ccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCc-eeeeeecccccCcccceE
Q 006825          431 VRVRQYGKSCK-D-LTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESE-RKGELLEKQEDGHLNMLL  507 (630)
Q Consensus       431 g~VriWd~~~~-e-l~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~-~~~~l~~~~~~gh~~~V~  507 (630)
                      |.|.++++... . ...+..+.. ....++|++|+-- .|+++++.  .+.|.+|++...+ ....-    .......+.
T Consensus        62 Gri~v~~i~~~~~~~~~l~~i~~-~~~~g~V~ai~~~-~~~lv~~~--g~~l~v~~l~~~~~l~~~~----~~~~~~~i~  133 (321)
T PF03178_consen   62 GRILVFEISESPENNFKLKLIHS-TEVKGPVTAICSF-NGRLVVAV--GNKLYVYDLDNSKTLLKKA----FYDSPFYIT  133 (321)
T ss_dssp             EEEEEEEECSS-----EEEEEEE-EEESS-EEEEEEE-TTEEEEEE--TTEEEEEEEETTSSEEEEE----EE-BSSSEE
T ss_pred             cEEEEEEEEcccccceEEEEEEE-EeecCcceEhhhh-CCEEEEee--cCEEEEEEccCcccchhhh----eecceEEEE
Confidence            88999988763 0 012222222 3357889999876 55544444  3789999998777 33221    122223555


Q ss_pred             EEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeCCCCceEEec--cCCCCEEEEEEcCC-CeEEEE
Q 006825          508 LANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQ--GHLDDVLDLSWSKS-QHLLSS  584 (630)
Q Consensus       508 svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL~--GHs~~V~sLafSPd-~~LaSg  584 (630)
                      ++...  +.+++.|..-..+.+                     .-|+.....+..+.  .....|+++.|-++ ..++.+
T Consensus       134 sl~~~--~~~I~vgD~~~sv~~---------------------~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~  190 (321)
T PF03178_consen  134 SLSVF--KNYILVGDAMKSVSL---------------------LRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVG  190 (321)
T ss_dssp             EEEEE--TTEEEEEESSSSEEE---------------------EEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEE
T ss_pred             EEecc--ccEEEEEEcccCEEE---------------------EEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEE
Confidence            55544  457777755554421                     12233333233322  23456899999877 799999


Q ss_pred             ECCCcEEEEeCCC-------Cc----EEEEEecCCceEEEE
Q 006825          585 SMDKTVRLWHLSS-------KT----CLKIFSHSDYDISLV  614 (630)
Q Consensus       585 S~DgtVrIWDl~t-------g~----~l~t~~H~~~V~sVa  614 (630)
                      -.+|.|.++....       +.    .+..|...+.|+++.
T Consensus       191 D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~  231 (321)
T PF03178_consen  191 DKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFR  231 (321)
T ss_dssp             ETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEE
T ss_pred             cCCCeEEEEEECCCCcccccccccceeEEEEECCCccceEE
Confidence            9999999998762       22    233344678888884

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=92.93  E-value=4.2  Score=36.99  Aligned_cols=87  Identities=13%  Similarity=0.078  Sum_probs=55.0

Q ss_pred             EEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccCcc
Q 006825          424 SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHL  503 (630)
Q Consensus       424 l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~  503 (630)
                      |+.|+.|..||+|+-.  +     .+.++.. ++.|.+++-... ..++.+-..|||-||+-.  .++...     .. .
T Consensus        18 LlvGs~D~~IRvf~~~--e-----~~~Ei~e-~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~--~RlWRi-----KS-K   80 (111)
T PF14783_consen   18 LLVGSDDFEIRVFKGD--E-----IVAEITE-TDKVTSLCSLGG-GRFAYALANGTVGVYDRS--QRLWRI-----KS-K   80 (111)
T ss_pred             EEEecCCcEEEEEeCC--c-----EEEEEec-ccceEEEEEcCC-CEEEEEecCCEEEEEeCc--ceeeee-----cc-C
Confidence            8999999999999753  2     3455553 456777776665 568889999999999753  222221     11 1


Q ss_pred             cceEEEEE-CCC--C-CEEEEeeCCCee
Q 006825          504 NMLLLANG-SPE--P-TSLSPKHLDNHL  527 (630)
Q Consensus       504 ~~V~svaf-Spd--g-~~lasgs~Dg~I  527 (630)
                      ..+.++.+ ..+  | .-|++|-.+|.|
T Consensus        81 ~~~~~~~~~D~~gdG~~eLI~GwsnGkv  108 (111)
T PF14783_consen   81 NQVTSMAFYDINGDGVPELIVGWSNGKV  108 (111)
T ss_pred             CCeEEEEEEcCCCCCceEEEEEecCCeE
Confidence            22444333 322  2 357777777766

>PRK13616 lipoprotein LpqB; Provisional

Probab=92.70  E-value=14  Score=43.19  Aligned_cols=152  Identities=13%  Similarity=0.031  Sum_probs=82.2

Q ss_pred             cCccceeEEEeec---ceE-e-----ecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccc
Q 006825          337 GHSPIVQELMRRQ---NVE-E-----GNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSE  407 (630)
Q Consensus       337 GHs~~V~~Lafs~---~la-S-----gS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~  407 (630)
                      |....+...+++|   .+| .     ...|.... ||-...+.....+..+.  .+..-.|+|||+.+.+.++..     
T Consensus       347 g~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~-Lwv~~~gg~~~~lt~g~--~~t~PsWspDG~~lw~v~dg~-----  418 (591)
T PRK13616        347 GQMGNITSAALSRSGRQVAAVVTLGRGAPDPASS-LWVGPLGGVAVQVLEGH--SLTRPSWSLDADAVWVVVDGN-----  418 (591)
T ss_pred             ccccCcccceECCCCCEEEEEEeecCCCCCcceE-EEEEeCCCcceeeecCC--CCCCceECCCCCceEEEecCc-----
Confidence            4334566777777   111 1     12344445 77554443333333243  377789999998776543221     


Q ss_pred             cCCcceEEEeecCCCe-EEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEE---E
Q 006825          408 KGGRRSSSATDDSQDV-SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHV---W  483 (630)
Q Consensus       408 ~gh~~~Vsa~~~s~d~-l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrV---W  483 (630)
                                   +.. +......+.+++.++..++..     +   ...+.|..+.|||||+.||--. ++.|.|   =
T Consensus       419 -------------~~~~v~~~~~~gql~~~~vd~ge~~-----~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vv  476 (591)
T PRK13616        419 -------------TVVRVIRDPATGQLARTPVDASAVA-----S---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVE  476 (591)
T ss_pred             -------------ceEEEeccCCCceEEEEeccCchhh-----h---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEE
Confidence                         111 122223456766677665431     1   3456799999999999888765 466666   2


Q ss_pred             ECcCCceeeeeecc--cccCcccceEEEEECCCCCEEEE
Q 006825          484 QVVESERKGELLEK--QEDGHLNMLLLANGSPEPTSLSP  520 (630)
Q Consensus       484 Dl~tg~~~~~l~~~--~~~gh~~~V~svafSpdg~~las  520 (630)
                      ....|.  ..+...  ...+-...+..+.|..++.+++.
T Consensus       477 r~~~G~--~~l~~~~~l~~~l~~~~~~l~W~~~~~L~V~  513 (591)
T PRK13616        477 QTEDGQ--YALTNPREVGPGLGDTAVSLDWRTGDSLVVG  513 (591)
T ss_pred             eCCCCc--eeecccEEeecccCCccccceEecCCEEEEE
Confidence            323343  222000  01222233567889988886543

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=92.49  E-value=17  Score=38.84  Aligned_cols=114  Identities=11%  Similarity=0.028  Sum_probs=67.1

Q ss_pred             eEecccCcCEEEEEEccCCCEEEEEe-CCCcEEEEECcC--CceeeeeecccccCcccceEEEEECCCCCEEEEeeCCC-
Q 006825          450 QEIQAHNGSIWSIKFSLDGRYLASAG-EDCVIHVWQVVE--SERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDN-  525 (630)
Q Consensus       450 ~tL~gHt~~V~sVaFSpDG~~LASgS-~DgtIrVWDl~t--g~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg-  525 (630)
                      ..+..|-..-+.|+||||++.|..+- .-+.|.-|++..  +.....-.........+..-.++...+|.+.+++..++ 
T Consensus       156 ~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~  235 (307)
T COG3386         156 RLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGG  235 (307)
T ss_pred             EeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCc
Confidence            34455556668999999998776664 447788777752  11111000000111223333455555666664443332 


Q ss_pred             eeeeecccccccccccccCccccccEEEeCCCCceEEeccCCCCEEEEEEcC-C--CeEEEEEC
Q 006825          526 HLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSK-S--QHLLSSSM  586 (630)
Q Consensus       526 ~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL~GHs~~V~sLafSP-d--~~LaSgS~  586 (630)
                      .|                       .+|+..|+++..+.-+...+++++|-- +  .+++|+..
T Consensus       236 ~v-----------------------~~~~pdG~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs~~  276 (307)
T COG3386         236 RV-----------------------VRFNPDGKLLGEIKLPVKRPTNPAFGGPDLNTLYITSAR  276 (307)
T ss_pred             eE-----------------------EEECCCCcEEEEEECCCCCCccceEeCCCcCEEEEEecC
Confidence            44                       778888999999988888899999964 4  44444443

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=92.41  E-value=15  Score=37.94  Aligned_cols=114  Identities=16%  Similarity=0.092  Sum_probs=65.2

Q ss_pred             CEEEEEEccCCCEEEEEeCCCcEEEEE-CcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeC---CCeeeeeccc
Q 006825          458 SIWSIKFSLDGRYLASAGEDCVIHVWQ-VVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHL---DNHLEKKRRG  533 (630)
Q Consensus       458 ~V~sVaFSpDG~~LASgS~DgtIrVWD-l~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~---Dg~I~i~~~~  533 (630)
                      .+..-.|+++|.+.+....+...+++. ..++.........  ..-...|..+.++|||..++.-..   ++.|.+-...
T Consensus        67 ~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~~~v~~--~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~  144 (253)
T PF10647_consen   67 SLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEPVEVDW--PGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVV  144 (253)
T ss_pred             ccccccccCCCCEEEEEcCCCceEEEEecCCCcceeEEecc--cccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEE
Confidence            677888999988777767677777774 3333332221111  111118999999999998887652   3444222111


Q ss_pred             ccccccccccCccccccEEEeCCC------CceEEeccCCCCEEEEEEcCC-CeEEEE-ECCCcEEE
Q 006825          534 RSINRKSLSLDHMVVPETVFALSD------KPICSFQGHLDDVLDLSWSKS-QHLLSS-SMDKTVRL  592 (630)
Q Consensus       534 ~~~~~~s~s~d~~i~~~~Vwdlsg------k~l~tL~GHs~~V~sLafSPd-~~LaSg-S~DgtVrI  592 (630)
                      +                   +-.+      .++.........|++++|.++ .+++.+ ..+..+..
T Consensus       145 r-------------------~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V~~~~~~~~~~~  192 (253)
T PF10647_consen  145 R-------------------DGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVVLGRSAGGPVVR  192 (253)
T ss_pred             e-------------------CCCCCcceeccceEecccccCcceeeeecCCCEEEEEeCCCCCceeE
Confidence            1                   1112      223333344568999999998 554443 34554444

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=92.15  E-value=2.4  Score=47.65  Aligned_cols=137  Identities=11%  Similarity=0.033  Sum_probs=63.8

Q ss_pred             eEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeee
Q 006825          450 QEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEK  529 (630)
Q Consensus       450 ~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i  529 (630)
                      ..+....-....|.++|+|++++.++ ||.-.|+........ .         .+.....+|.+.+++. +--...+|.+
T Consensus        26 k~lg~~~~~p~~ls~npngr~v~V~g-~geY~iyt~~~~r~k-~---------~G~g~~~vw~~~n~yA-v~~~~~~I~I   93 (443)
T PF04053_consen   26 KELGSCEIYPQSLSHNPNGRFVLVCG-DGEYEIYTALAWRNK-A---------FGSGLSFVWSSRNRYA-VLESSSTIKI   93 (443)
T ss_dssp             EEEEE-SS--SEEEE-TTSSEEEEEE-TTEEEEEETTTTEEE-E---------EEE-SEEEE-TSSEEE-EE-TTS-EEE
T ss_pred             ccCCCCCcCCeeEEECCCCCEEEEEc-CCEEEEEEccCCccc-c---------cCceeEEEEecCccEE-EEECCCeEEE
Confidence            44445556688999999999999855 677777764322221 1         1334467788866644 4334666644


Q ss_pred             ecccccccccccccCccccccEEEeCCCCceEEeccCCCCEEEEEEcCCCeEEEEECCCcEEEEeCCCCcEEEEEecCCc
Q 006825          530 KRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFSHSDY  609 (630)
Q Consensus       530 ~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL~GHs~~V~sLafSPd~~LaSgS~DgtVrIWDl~tg~~l~t~~H~~~  609 (630)
                      ..                      ++..+....+.-. ..+..|-.  ..+|+..+ ++.|.+||..+++.++.+.... 
T Consensus        94 ~k----------------------n~~~~~~k~i~~~-~~~~~If~--G~LL~~~~-~~~i~~yDw~~~~~i~~i~v~~-  146 (443)
T PF04053_consen   94 YK----------------------NFKNEVVKSIKLP-FSVEKIFG--GNLLGVKS-SDFICFYDWETGKLIRRIDVSA-  146 (443)
T ss_dssp             EE----------------------TTEE-TT-----S-S-EEEEE---SSSEEEEE-TTEEEEE-TTT--EEEEESS-E-
T ss_pred             EE----------------------cCccccceEEcCC-cccceEEc--CcEEEEEC-CCCEEEEEhhHcceeeEEecCC-
Confidence            21                      1111111111111 11222221  23333333 3478888888888888887443 


Q ss_pred             eEEEE-cCCCcEEEEec
Q 006825          610 DISLV-DRLMLRFAYGA  625 (630)
Q Consensus       610 V~sVa-s~~~~~lAsgs  625 (630)
                      |..|. ++++..+|..+
T Consensus       147 vk~V~Ws~~g~~val~t  163 (443)
T PF04053_consen  147 VKYVIWSDDGELVALVT  163 (443)
T ss_dssp             -EEEEE-TTSSEEEEE-
T ss_pred             CcEEEEECCCCEEEEEe
Confidence            66666 66666655544

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=91.89  E-value=0.48  Score=48.09  Aligned_cols=104  Identities=13%  Similarity=0.136  Sum_probs=61.9

Q ss_pred             CCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccc
Q 006825          468 GRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMV  547 (630)
Q Consensus       468 G~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i  547 (630)
                      +..|+.|+.||.|.+|+...........   ..+.......+....++.+..++..++.|                    
T Consensus        70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~---~s~~e~i~~~Ip~~~~~~~~c~~~~dg~i--------------------  126 (238)
T KOG2444|consen   70 SAKLMVGTSDGAVYVFNWNLEGAHSDRV---CSGEESIDLGIPNGRDSSLGCVGAQDGRI--------------------  126 (238)
T ss_pred             CceEEeecccceEEEecCCccchHHHhh---hcccccceeccccccccceeEEeccCCce--------------------
Confidence            4568889999999999886221111110   11112222233334446677788889988                    


Q ss_pred             cccEEEeC-CCCceEEeccCC-CCEEEEEEcCC-CeEEEE--ECCCcEEEEeCCC
Q 006825          548 VPETVFAL-SDKPICSFQGHL-DDVLDLSWSKS-QHLLSS--SMDKTVRLWHLSS  597 (630)
Q Consensus       548 ~~~~Vwdl-sgk~l~tL~GHs-~~V~sLafSPd-~~LaSg--S~DgtVrIWDl~t  597 (630)
                         +.|.+ ..+.+.....|+ .++..+..+.. .+|+.+  |.|..++.|++..
T Consensus       127 ---r~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~  178 (238)
T KOG2444|consen  127 ---RACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK  178 (238)
T ss_pred             ---eeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence               45554 344454455566 45555555444 777777  8888888888764

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=91.85  E-value=5.1  Score=45.02  Aligned_cols=127  Identities=11%  Similarity=-0.020  Sum_probs=60.3

Q ss_pred             EEEEEEcCCCCeEEeecCCC-CCccccCC----cceEEEeecCCCe-EEEecCCcEEEEEeCCCCcccceeeeeEecccC
Q 006825          383 IRTVASSVTGHKERRSSDER-DTSSEKGG----RRSSSATDDSQDV-SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHN  456 (630)
Q Consensus       383 V~sVAfSpdG~~lasgS~D~-dt~s~~gh----~~~Vsa~~~s~d~-l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt  456 (630)
                      .+.+.++|+|+.++-..+.. ..-+..+.    ........|...+ ++.-....+|.++.--..+.     ...++- .
T Consensus        35 p~~ls~npngr~v~V~g~geY~iyt~~~~r~k~~G~g~~~vw~~~n~yAv~~~~~~I~I~kn~~~~~-----~k~i~~-~  108 (443)
T PF04053_consen   35 PQSLSHNPNGRFVLVCGDGEYEIYTALAWRNKAFGSGLSFVWSSRNRYAVLESSSTIKIYKNFKNEV-----VKSIKL-P  108 (443)
T ss_dssp             -SEEEE-TTSSEEEEEETTEEEEEETTTTEEEEEEE-SEEEE-TSSEEEEE-TTS-EEEEETTEE-T-----T------S
T ss_pred             CeeEEECCCCCEEEEEcCCEEEEEEccCCcccccCceeEEEEecCccEEEEECCCeEEEEEcCcccc-----ceEEcC-C
Confidence            56688888888777654443 11000000    1111112222222 44444466777752211110     011111 1


Q ss_pred             cCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCe
Q 006825          457 GSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNH  526 (630)
Q Consensus       457 ~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~  526 (630)
                      ..+..|-.   |.+|+..+.+ .|.+||+.+++.++.+.      . ..|..|.|++++.+++..+.+..
T Consensus       109 ~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~------v-~~vk~V~Ws~~g~~val~t~~~i  167 (443)
T PF04053_consen  109 FSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRID------V-SAVKYVIWSDDGELVALVTKDSI  167 (443)
T ss_dssp             S-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEES------S--E-EEEEE-TTSSEEEEE-S-SE
T ss_pred             cccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEe------c-CCCcEEEEECCCCEEEEEeCCeE
Confidence            12333332   8888887765 89999999999888751      1 23889999999999998876654

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=91.71  E-value=0.31  Score=57.09  Aligned_cols=108  Identities=14%  Similarity=0.131  Sum_probs=77.3

Q ss_pred             EEEEEccCCCEEEEEe----CCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeeccccc
Q 006825          460 WSIKFSLDGRYLASAG----EDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRS  535 (630)
Q Consensus       460 ~sVaFSpDG~~LASgS----~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~  535 (630)
                      +-+.|+|...+||.++    .-|.|-|+- .+|++...+      ...-.+.+++|+|..-.++.+-.-|.+        
T Consensus        19 ti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~V------t~P~hatSLCWHpe~~vLa~gwe~g~~--------   83 (1416)
T KOG3617|consen   19 TISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDV------TYPVHATSLCWHPEEFVLAQGWEMGVS--------   83 (1416)
T ss_pred             cccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCccc------ccceehhhhccChHHHHHhhcccccee--------
Confidence            3357888888888876    346677773 345533221      111234579999998888888777777        


Q ss_pred             ccccccccCccccccEEEeCCCCceEE-eccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCC
Q 006825          536 INRKSLSLDHMVVPETVFALSDKPICS-FQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSS  597 (630)
Q Consensus       536 ~~~~s~s~d~~i~~~~Vwdlsgk~l~t-L~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~t  597 (630)
                                     .+|....+..++ ...|..+|..|.|||+ +.|+|+-.=|.|.+|....
T Consensus        84 ---------------~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~  132 (1416)
T KOG3617|consen   84 ---------------DVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDV  132 (1416)
T ss_pred             ---------------EEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeee
Confidence                           666664444443 4579999999999999 9999999999999998764

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=91.58  E-value=23  Score=38.38  Aligned_cols=54  Identities=15%  Similarity=0.207  Sum_probs=38.1

Q ss_pred             EEEe--C-CCCceEEeccCCCCEEEEEEcCC--CeEEEEE-CCCcEEEEeCCCCcEEEEEe
Q 006825          551 TVFA--L-SDKPICSFQGHLDDVLDLSWSKS--QHLLSSS-MDKTVRLWHLSSKTCLKIFS  605 (630)
Q Consensus       551 ~Vwd--l-sgk~l~tL~GHs~~V~sLafSPd--~~LaSgS-~DgtVrIWDl~tg~~l~t~~  605 (630)
                      .||.  + +++.+..+.. ..++.+|+.+.+  -+|+..+ .++.|.+||..+|+.++++.
T Consensus       270 eVWv~D~~t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~  329 (342)
T PF06433_consen  270 EVWVYDLKTHKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIE  329 (342)
T ss_dssp             EEEEEETTTTEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE-
T ss_pred             EEEEEECCCCeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehh
Confidence            4554  4 6788887763 235789999987  4665554 58999999999999999887

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=91.51  E-value=0.45  Score=36.45  Aligned_cols=34  Identities=18%  Similarity=0.274  Sum_probs=29.7

Q ss_pred             CCCEEEEEEcCC-CeEEEEECCCcEEEEeCCCCcEE
Q 006825          567 LDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCL  601 (630)
Q Consensus       567 s~~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg~~l  601 (630)
                      ...|..++|+|. .+||.+..||.|.|+.+ +++.+
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qri   45 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQRI   45 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcCc
Confidence            356999999999 99999999999999999 66554

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=91.29  E-value=0.42  Score=48.51  Aligned_cols=107  Identities=11%  Similarity=0.027  Sum_probs=63.4

Q ss_pred             eEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCC
Q 006825          351 VEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQER  430 (630)
Q Consensus       351 laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~D  430 (630)
                      |...|.|++++ -.++         + .|+-.+++.-|...|..+.+++                      .-++.|..+
T Consensus        33 l~~~sa~~~v~-~~~~---------~-k~k~s~rse~~~~e~~~v~~~~----------------------~~~~vG~~d   79 (238)
T KOG2444|consen   33 LRATSADGLVR-ERKV---------R-KHKESCRSERFIDEGQRVVTAS----------------------AKLMVGTSD   79 (238)
T ss_pred             hccccCCcccc-cchh---------h-hhhhhhhhhhhhhcceeecccC----------------------ceEEeeccc
Confidence            34456777777 2322         2 5666677777777765444322                      226888899


Q ss_pred             cEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeee
Q 006825          431 VRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGE  493 (630)
Q Consensus       431 g~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~  493 (630)
                      |.|.+|....-.   ..+-....+-......|.--.++.+..+++.|+.||.|++.-.+.+..
T Consensus        80 g~v~~~n~n~~g---~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~  139 (238)
T KOG2444|consen   80 GAVYVFNWNLEG---AHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGY  139 (238)
T ss_pred             ceEEEecCCccc---hHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeee
Confidence            999999775110   000000111222233334444677899999999999999987665544

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=91.24  E-value=31  Score=39.14  Aligned_cols=27  Identities=15%  Similarity=0.209  Sum_probs=24.8

Q ss_pred             CeEEEEECCCcEEEEeCCCCcEEEEEe
Q 006825          579 QHLLSSSMDKTVRLWHLSSKTCLKIFS  605 (630)
Q Consensus       579 ~~LaSgS~DgtVrIWDl~tg~~l~t~~  605 (630)
                      ++|+.++.||.|+.+|..+|+.+..++
T Consensus       407 ~~v~~g~~dG~l~ald~~tG~~lW~~~  433 (488)
T cd00216         407 NLVFAGAADGYFRAFDATTGKELWKFR  433 (488)
T ss_pred             CeEEEECCCCeEEEEECCCCceeeEEE
Confidence            788888999999999999999998887

The alignment model contains an 8-bladed beta-propeller.

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=91.09  E-value=0.4  Score=57.56  Aligned_cols=49  Identities=18%  Similarity=0.352  Sum_probs=42.6

Q ss_pred             CCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCCCcEEEEEe-cCCceEEEE
Q 006825          566 HLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYDISLV  614 (630)
Q Consensus       566 Hs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg~~l~t~~-H~~~V~sVa  614 (630)
                      -.++|++++|+.+ .+++.|-.+|.|.+||+..+..++.+. |..+++.+-
T Consensus       129 v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi  179 (1206)
T KOG2079|consen  129 VQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGVI  179 (1206)
T ss_pred             cCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceEE
Confidence            3468999999999 788888899999999999999999987 777777665

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=91.08  E-value=0.66  Score=35.56  Aligned_cols=34  Identities=15%  Similarity=0.220  Sum_probs=30.0

Q ss_pred             CcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCce
Q 006825          456 NGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESER  490 (630)
Q Consensus       456 t~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~  490 (630)
                      ...|.+++|+|...+||.|..||.|.|+.+ +++.
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr   44 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR   44 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence            356999999999999999999999999998 5554

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=90.84  E-value=23  Score=37.05  Aligned_cols=68  Identities=7%  Similarity=-0.109  Sum_probs=48.8

Q ss_pred             CeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeee
Q 006825          422 DVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGEL  494 (630)
Q Consensus       422 d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l  494 (630)
                      +.++-|...+.+.+.+.++++.     .+.+..-...=......+++.++.-|+.|++...-|..+..++...
T Consensus        64 dfVV~GCy~g~lYfl~~~tGs~-----~w~f~~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVyks  131 (354)
T KOG4649|consen   64 DFVVLGCYSGGLYFLCVKTGSQ-----IWNFVILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKS  131 (354)
T ss_pred             CEEEEEEccCcEEEEEecchhh-----eeeeeehhhhccceEEcCCCceEEEecCCCcEEEecccccceEEec
Confidence            4478889999999999988853     2222222211122334669999999999999999999988887763

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=90.83  E-value=0.35  Score=57.09  Aligned_cols=156  Identities=13%  Similarity=0.155  Sum_probs=86.5

Q ss_pred             EEEEEeCCC--CcccceeeeeEecccCcCEEEEEEc---cCCCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccce
Q 006825          432 RVRQYGKSC--KDLTALYKCQEIQAHNGSIWSIKFS---LDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNML  506 (630)
Q Consensus       432 ~VriWd~~~--~el~~~~~v~tL~gHt~~V~sVaFS---pDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V  506 (630)
                      .+.+|++.-  +++.....++....-...+.-|.|.   +..-++.-+-.+++|+|.++.+...  .+    +.+|...+
T Consensus       154 ~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~--~l----~rsHs~~~  227 (1283)
T KOG1916|consen  154 ELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR--SL----FRSHSQRV  227 (1283)
T ss_pred             hhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCceeEeeechHHH--HH----HHhcCCCc
Confidence            356676542  2222222233333333333444444   4566777777889999877765443  22    34566544


Q ss_pred             EE-----------EEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeC-C-CCceEEeccCCCCEEEE
Q 006825          507 LL-----------ANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-S-DKPICSFQGHLDDVLDL  573 (630)
Q Consensus       507 ~s-----------vafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-s-gk~l~tL~GHs~~V~sL  573 (630)
                      ..           -..+|||+.++++..||.++.|..--...+    ....   ...|.. + +..++-+ .|...+..+
T Consensus       228 ~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~----~~rc---lhewkphd~~p~vC~l-c~~~~~~~v  299 (1283)
T KOG1916|consen  228 TDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKI----VHRC---LHEWKPHDKHPRVCWL-CHKQEILVV  299 (1283)
T ss_pred             ccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccc----cHhh---hhccCCCCCCCceeee-eccccccCC
Confidence            32           236999999999999999877654210000    0000   134554 2 3334444 555544444


Q ss_pred             EEcCCCeEEEEEC-CCcEEEEeCCCCcEE
Q 006825          574 SWSKSQHLLSSSM-DKTVRLWHLSSKTCL  601 (630)
Q Consensus       574 afSPd~~LaSgS~-DgtVrIWDl~tg~~l  601 (630)
                      ....-.++++++. ...+++|....-+|+
T Consensus       300 ~i~~w~~~Itttd~nre~k~w~~a~w~Cl  328 (1283)
T KOG1916|consen  300 SIGKWVLRITTTDVNREEKFWAEAPWQCL  328 (1283)
T ss_pred             ccceeEEEEecccCCcceeEeeccchhhh
Confidence            3322256777765 567999999888888

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=90.73  E-value=23  Score=36.76  Aligned_cols=202  Identities=9%  Similarity=0.006  Sum_probs=95.8

Q ss_pred             CccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCc
Q 006825          378 SWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNG  457 (630)
Q Consensus       378 gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~  457 (630)
                      |=.+.|-.++|.|+...|.+                            .....+.|..+++.. ++.   ....|.+ .+
T Consensus        19 g~~~e~SGLTy~pd~~tLfa----------------------------V~d~~~~i~els~~G-~vl---r~i~l~g-~~   65 (248)
T PF06977_consen   19 GILDELSGLTYNPDTGTLFA----------------------------VQDEPGEIYELSLDG-KVL---RRIPLDG-FG   65 (248)
T ss_dssp             T--S-EEEEEEETTTTEEEE----------------------------EETTTTEEEEEETT---EE---EEEE-SS--S
T ss_pred             CccCCccccEEcCCCCeEEE----------------------------EECCCCEEEEEcCCC-CEE---EEEeCCC-CC
Confidence            56667888999987665542                            223344555555532 211   1122444 34


Q ss_pred             CEEEEEEccCCCEEEEEeCCCcEEEEECcCCce---e---eeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeec
Q 006825          458 SIWSIKFSLDGRYLASAGEDCVIHVWQVVESER---K---GELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKR  531 (630)
Q Consensus       458 ~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~---~---~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~  531 (630)
                      -.-.|++.-++.++++--.++.+.+.++.....   .   ..+.......+...+-.++|.|.+..++.+-...-..++.
T Consensus        66 D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~  145 (248)
T PF06977_consen   66 DYEGITYLGNGRYVLSEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYE  145 (248)
T ss_dssp             SEEEEEE-STTEEEEEETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEE
T ss_pred             CceeEEEECCCEEEEEEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEE
Confidence            577899988888888766789999998843211   1   1111111123455688999999877666653332221111


Q ss_pred             ccccccccccccCccccccEEEeCCCCceEEeccCCCCEEEEEEcCC--CeEEEEECCCcEEEEeCCCCcEEEEEe-cC-
Q 006825          532 RGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS--QHLLSSSMDKTVRLWHLSSKTCLKIFS-HS-  607 (630)
Q Consensus       532 ~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL~GHs~~V~sLafSPd--~~LaSgS~DgtVrIWDl~tg~~l~t~~-H~-  607 (630)
                      ....      ......   .+.+.  ..+.........+.+++++|.  .+++-......|-++| .+|+.+..+. .. 
T Consensus       146 ~~~~------~~~~~~---~~~~~--~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g  213 (248)
T PF06977_consen  146 VNGF------PGGFDL---FVSDD--QDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRG  213 (248)
T ss_dssp             EEST------T-SS-----EEEE---HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STT
T ss_pred             Eccc------cCccce---eeccc--cccccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCc
Confidence            1100      000000   00000  000011224456789999997  5677778899999999 6788887776 22 


Q ss_pred             --------CceEEEE-cCCCcEEEEe
Q 006825          608 --------DYDISLV-DRLMLRFAYG  624 (630)
Q Consensus       608 --------~~V~sVa-s~~~~~lAsg  624 (630)
                              ...-.|+ ++++..+.++
T Consensus       214 ~~gl~~~~~QpEGIa~d~~G~LYIvs  239 (248)
T PF06977_consen  214 FHGLSKDIPQPEGIAFDPDGNLYIVS  239 (248)
T ss_dssp             GGG-SS---SEEEEEE-TT--EEEEE
T ss_pred             ccCcccccCCccEEEECCCCCEEEEc
Confidence                    2345666 6666555443

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=90.65  E-value=27  Score=37.41  Aligned_cols=136  Identities=10%  Similarity=-0.019  Sum_probs=74.0

Q ss_pred             cCEEEEEEccCCCEEEEEeC---------CCcEEEEECc-CCceeeeeecccccCcccceEEEEECCCCCEEEEeeCC-C
Q 006825          457 GSIWSIKFSLDGRYLASAGE---------DCVIHVWQVV-ESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLD-N  525 (630)
Q Consensus       457 ~~V~sVaFSpDG~~LASgS~---------DgtIrVWDl~-tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~D-g  525 (630)
                      ..-+.+...|+|.+-++-..         -..-.||-+. .+..++.     ..++...-+.++|+||++.+..+-.. +
T Consensus       111 ~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l-----~~~~~~~~NGla~SpDg~tly~aDT~~~  185 (307)
T COG3386         111 NRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRL-----LDDDLTIPNGLAFSPDGKTLYVADTPAN  185 (307)
T ss_pred             CCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEe-----ecCcEEecCceEECCCCCEEEEEeCCCC
Confidence            34568888899987666433         1112455554 3443333     24445556689999999776665333 4


Q ss_pred             eeeeecccccccccccccCccccccEEEeCCCCce-EEeccCCCCEEEEEEcCCCeEE-EEECCC-cEEEEeCCCCcEEE
Q 006825          526 HLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPI-CSFQGHLDDVLDLSWSKSQHLL-SSSMDK-TVRLWHLSSKTCLK  602 (630)
Q Consensus       526 ~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l-~tL~GHs~~V~sLafSPd~~La-SgS~Dg-tVrIWDl~tg~~l~  602 (630)
                      .|..+....    ...            .+.++.. ..+..+.+..-.++...++.|. ++-..| .|.+|+.. |+++.
T Consensus       186 ~i~r~~~d~----~~g------------~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~  248 (307)
T COG3386         186 RIHRYDLDP----ATG------------PIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLG  248 (307)
T ss_pred             eEEEEecCc----ccC------------ccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEE
Confidence            442111110    000            0011111 1122233334455555564444 444444 89999988 99999


Q ss_pred             EEe-cCCceEEEE
Q 006825          603 IFS-HSDYDISLV  614 (630)
Q Consensus       603 t~~-H~~~V~sVa  614 (630)
                      .+. ....+++++
T Consensus       249 ~i~lP~~~~t~~~  261 (307)
T COG3386         249 EIKLPVKRPTNPA  261 (307)
T ss_pred             EEECCCCCCccce
Confidence            998 547778777

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=90.32  E-value=6.1  Score=48.53  Aligned_cols=68  Identities=18%  Similarity=-0.027  Sum_probs=54.5

Q ss_pred             cCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeee
Q 006825          457 GSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKK  530 (630)
Q Consensus       457 ~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~  530 (630)
                      +.|.++.|..++.-+..+..+|.|.+=|..+....-.      ......|.+++|+||..+++-.....++.+-
T Consensus        69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eiv------g~vd~GI~aaswS~Dee~l~liT~~~tll~m  136 (1265)
T KOG1920|consen   69 DEIVSVQFLADTNSICVITALGDIILVDPETLELEIV------GNVDNGISAASWSPDEELLALITGRQTLLFM  136 (1265)
T ss_pred             cceEEEEEecccceEEEEecCCcEEEEcccccceeee------eeccCceEEEeecCCCcEEEEEeCCcEEEEE
Confidence            6899999999999888899999999988876543221      3445789999999999999988887777543

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=90.03  E-value=26  Score=36.26  Aligned_cols=108  Identities=7%  Similarity=0.007  Sum_probs=65.8

Q ss_pred             cCcCEEEEEEccCCCE-EEEEeCCCcEEEEE--CcCCceee-----eeecccccCcccceEEEEECCCCCEEEEeeCCCe
Q 006825          455 HNGSIWSIKFSLDGRY-LASAGEDCVIHVWQ--VVESERKG-----ELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNH  526 (630)
Q Consensus       455 Ht~~V~sVaFSpDG~~-LASgS~DgtIrVWD--l~tg~~~~-----~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~  526 (630)
                      .-+.-+.++|+.|-+. .++-+.+-+|.-||  ..+|....     .+.......+ ..--.+++..+|.+.++.-..++
T Consensus       156 ~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~-~~PDGm~ID~eG~L~Va~~ng~~  234 (310)
T KOG4499|consen  156 CVGISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFES-LEPDGMTIDTEGNLYVATFNGGT  234 (310)
T ss_pred             hccCCccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCC-CCCCcceEccCCcEEEEEecCcE
Confidence            3344567888877664 45567888898888  55554321     1110000011 01113344556777777777777


Q ss_pred             eeeecccccccccccccCccccccEEEeC-CCCceEEeccCCCCEEEEEEc-CC-CeE-EEEEC
Q 006825          527 LEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSWS-KS-QHL-LSSSM  586 (630)
Q Consensus       527 I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL~GHs~~V~sLafS-Pd-~~L-aSgS~  586 (630)
                      |                       ..+++ +|+.+.+++-.+..|++++|- |+ ..| +|+..
T Consensus       235 V-----------------------~~~dp~tGK~L~eiklPt~qitsccFgGkn~d~~yvT~aa  275 (310)
T KOG4499|consen  235 V-----------------------QKVDPTTGKILLEIKLPTPQITSCCFGGKNLDILYVTTAA  275 (310)
T ss_pred             E-----------------------EEECCCCCcEEEEEEcCCCceEEEEecCCCccEEEEEehh
Confidence            6                       45555 899999999899999999996 44 444 45443

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=89.81  E-value=8.2  Score=46.32  Aligned_cols=141  Identities=8%  Similarity=0.042  Sum_probs=90.4

Q ss_pred             EEEecCCcEEEEEeCCCCcccceeeeeEecccCcC-EEEEEEcc-----CCCEEEEEeCCCcEEEEECcCCceeeeeec-
Q 006825          424 SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGS-IWSIKFSL-----DGRYLASAGEDCVIHVWQVVESERKGELLE-  496 (630)
Q Consensus       424 l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~-V~sVaFSp-----DG~~LASgS~DgtIrVWDl~tg~~~~~l~~-  496 (630)
                      +.......+|+..|+..++     .+.+++.|... |..++=..     ...-.+.|-.+..|..||.+-...  .+.. 
T Consensus       497 l~~~~~~~~ly~mDLe~GK-----VV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~--k~v~~  569 (794)
T PF08553_consen  497 LLDPNNPNKLYKMDLERGK-----VVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGN--KLVDS  569 (794)
T ss_pred             eecCCCCCceEEEecCCCc-----EEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCC--ceeec
Confidence            4555567788889988876     46778777754 55553221     123345677788999999975431  1110 


Q ss_pred             -ccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeCCCCceEE-eccCCCCEEEEE
Q 006825          497 -KQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICS-FQGHLDDVLDLS  574 (630)
Q Consensus       497 -~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~t-L~GHs~~V~sLa  574 (630)
                       ...........+++-+.+| +||.|+.+|.|                       ++|+-.|+.-++ |.|-..+|..|.
T Consensus       570 ~~k~Y~~~~~Fs~~aTt~~G-~iavgs~~G~I-----------------------RLyd~~g~~AKT~lp~lG~pI~~iD  625 (794)
T PF08553_consen  570 QSKQYSSKNNFSCFATTEDG-YIAVGSNKGDI-----------------------RLYDRLGKRAKTALPGLGDPIIGID  625 (794)
T ss_pred             cccccccCCCceEEEecCCc-eEEEEeCCCcE-----------------------EeecccchhhhhcCCCCCCCeeEEE
Confidence             0011233456677777776 57888999999                       566554443333 457789999999


Q ss_pred             EcCCCeEEEEECCCcEEEEeC
Q 006825          575 WSKSQHLLSSSMDKTVRLWHL  595 (630)
Q Consensus       575 fSPd~~LaSgS~DgtVrIWDl  595 (630)
                      .+.|+..+-|-.+..+-|+++
T Consensus       626 vt~DGkwilaTc~tyLlLi~t  646 (794)
T PF08553_consen  626 VTADGKWILATCKTYLLLIDT  646 (794)
T ss_pred             ecCCCcEEEEeecceEEEEEE
Confidence            999943344444677888886

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=89.32  E-value=1.5  Score=53.00  Aligned_cols=99  Identities=14%  Similarity=0.180  Sum_probs=66.7

Q ss_pred             eEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccCc
Q 006825          423 VSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGH  502 (630)
Q Consensus       423 ~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh  502 (630)
                      .++.|+.-|.|...|+.+. +.   ....=..-+++|++++|+.+|++++.|-.+|.|.+||+..+...+.+.... ..+
T Consensus       101 ~ivi~Ts~ghvl~~d~~~n-L~---~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~-ap~  175 (1206)
T KOG2079|consen  101 PIVIGTSHGHVLLSDMTGN-LG---PLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHG-APV  175 (1206)
T ss_pred             eEEEEcCchhhhhhhhhcc-cc---hhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecC-Ccc
Confidence            3677777778877776543 11   001112235789999999999999999999999999999988877763111 112


Q ss_pred             ccceEEEEECCCCCEEEEeeCCCee
Q 006825          503 LNMLLLANGSPEPTSLSPKHLDNHL  527 (630)
Q Consensus       503 ~~~V~svafSpdg~~lasgs~Dg~I  527 (630)
                       ..|..+-+..++..++++-..|.+
T Consensus       176 -t~vi~v~~t~~nS~llt~D~~Gsf  199 (1206)
T KOG2079|consen  176 -TGVIFVGRTSQNSKLLTSDTGGSF  199 (1206)
T ss_pred             -ceEEEEEEeCCCcEEEEccCCCce
Confidence             334445555566677777777753

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=89.28  E-value=5.1  Score=43.88  Aligned_cols=109  Identities=16%  Similarity=0.092  Sum_probs=65.1

Q ss_pred             CEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEE
Q 006825          382 SIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWS  461 (630)
Q Consensus       382 ~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~s  461 (630)
                      .+...++||||++++-+-+                        ..|+....|+++|+.+++..    ...+..-.  ...
T Consensus       125 ~~~~~~~Spdg~~la~~~s------------------------~~G~e~~~l~v~Dl~tg~~l----~d~i~~~~--~~~  174 (414)
T PF02897_consen  125 SLGGFSVSPDGKRLAYSLS------------------------DGGSEWYTLRVFDLETGKFL----PDGIENPK--FSS  174 (414)
T ss_dssp             EEEEEEETTTSSEEEEEEE------------------------ETTSSEEEEEEEETTTTEEE----EEEEEEEE--SEE
T ss_pred             EeeeeeECCCCCEEEEEec------------------------CCCCceEEEEEEECCCCcCc----CCcccccc--cce
Confidence            3456889999998874311                        22455578999999988542    22222211  123


Q ss_pred             EEEccCCCEEEEEeCCC-----------cEEEEECcCCceeeeeecccccCcc-c-ceEEEEECCCCCEEEEeeC
Q 006825          462 IKFSLDGRYLASAGEDC-----------VIHVWQVVESERKGELLEKQEDGHL-N-MLLLANGSPEPTSLSPKHL  523 (630)
Q Consensus       462 VaFSpDG~~LASgS~Dg-----------tIrVWDl~tg~~~~~l~~~~~~gh~-~-~V~svafSpdg~~lasgs~  523 (630)
                      +.|.+|++.|+-...|.           .|+.|.+.+....-.++   +.... . ....+..++|+++++....
T Consensus       175 ~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lv---fe~~~~~~~~~~~~~s~d~~~l~i~~~  246 (414)
T PF02897_consen  175 VSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELV---FEEPDEPFWFVSVSRSKDGRYLFISSS  246 (414)
T ss_dssp             EEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEE---EC-TTCTTSEEEEEE-TTSSEEEEEEE
T ss_pred             EEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECCCChHhCeeE---EeecCCCcEEEEEEecCcccEEEEEEE
Confidence            99999988776665443           37888887665432232   22222 2 2567888999998776443

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=89.23  E-value=3.5  Score=48.84  Aligned_cols=69  Identities=14%  Similarity=0.160  Sum_probs=55.2

Q ss_pred             EeecCCCe--EEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCc
Q 006825          416 ATDDSQDV--SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESE  489 (630)
Q Consensus       416 a~~~s~d~--l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~  489 (630)
                      ++.+.+.-  ++.|-.-|.+.+|...+.+..     .....|+.+|..+.|||+|..|+|+..=|.|.+|......
T Consensus        64 SLCWHpe~~vLa~gwe~g~~~v~~~~~~e~h-----tv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g  134 (1416)
T KOG3617|consen   64 SLCWHPEEFVLAQGWEMGVSDVQKTNTTETH-----TVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIG  134 (1416)
T ss_pred             hhccChHHHHHhhccccceeEEEecCCceee-----eeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeecc
Confidence            34555554  788888999999998877532     2235699999999999999999999999999999876433

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=89.08  E-value=12  Score=43.74  Aligned_cols=121  Identities=13%  Similarity=0.075  Sum_probs=71.8

Q ss_pred             cCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEE--CCCCCEEEEeeCCCeeeeecccc
Q 006825          457 GSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANG--SPEPTSLSPKHLDNHLEKKRRGR  534 (630)
Q Consensus       457 ~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svaf--Spdg~~lasgs~Dg~I~i~~~~~  534 (630)
                      ....-+.-+.-++..+.-+.-.++.|||...+....+-.   + .....|..+.|  .|+++.+++-+-...|.++...+
T Consensus        30 ~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~---f-~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R  105 (631)
T PF12234_consen   30 SNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEES---F-SEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLR  105 (631)
T ss_pred             CCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeee---e-cCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccc
Confidence            344555555555544443444569999998877544421   1 34567887777  57889888888888887666544


Q ss_pred             cccccccccCccccccEEEeCCCCceEE--eccCC-CCEEEEEEcCCCeEEEEECCCcEEEEeC
Q 006825          535 SINRKSLSLDHMVVPETVFALSDKPICS--FQGHL-DDVLDLSWSKSQHLLSSSMDKTVRLWHL  595 (630)
Q Consensus       535 ~~~~~s~s~d~~i~~~~Vwdlsgk~l~t--L~GHs-~~V~sLafSPd~~LaSgS~DgtVrIWDl  595 (630)
                      ........         -|    .+++.  +..|+ .+|.+..|.+++.|+.|+. +.+.|+|-
T Consensus       106 ~dy~~~~p---------~w----~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG-Nqlfv~dk  155 (631)
T PF12234_consen  106 YDYTNKGP---------SW----APIRKIDISSHTPHPIGDSIWLKDGTLVVGSG-NQLFVFDK  155 (631)
T ss_pred             hhhhcCCc---------cc----ceeEEEEeecCCCCCccceeEecCCeEEEEeC-CEEEEECC
Confidence            11000000         01    11111  22344 4799999999987777764 46777764

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=88.82  E-value=22  Score=39.46  Aligned_cols=188  Identities=13%  Similarity=0.074  Sum_probs=84.3

Q ss_pred             cceEEEeecCCCe-EEEecCCcEEEEEeCCCCcccceeeeeE--ec-ccCcCEEEEEEcc-----CC---CEEEEEeCCC
Q 006825          411 RRSSSATDDSQDV-SFHGQERVRVRQYGKSCKDLTALYKCQE--IQ-AHNGSIWSIKFSL-----DG---RYLASAGEDC  478 (630)
Q Consensus       411 ~~~Vsa~~~s~d~-l~Sgs~Dg~VriWd~~~~el~~~~~v~t--L~-gHt~~V~sVaFSp-----DG---~~LASgS~Dg  478 (630)
                      +..|++++.+..| ++.|..+|.+.+.|.+.........+..  +. .....|++|.|+.     |+   -+|+.|...|
T Consensus        86 ~g~vtal~~S~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~G  165 (395)
T PF08596_consen   86 QGPVTALKNSDIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGTNSG  165 (395)
T ss_dssp             S-SEEEEEE-BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEEETTS
T ss_pred             CCcEeEEecCCCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEEeCCC
Confidence            4556666666666 6778889999999998775432211111  11 1345688999973     33   3688888889


Q ss_pred             cEEEEECcC--Cc-eeeeeecccccCcccceEEEE-ECCCCCEEEEeeCCCeeeeeccccccc---ccccccCccccccE
Q 006825          479 VIHVWQVVE--SE-RKGELLEKQEDGHLNMLLLAN-GSPEPTSLSPKHLDNHLEKKRRGRSIN---RKSLSLDHMVVPET  551 (630)
Q Consensus       479 tIrVWDl~t--g~-~~~~l~~~~~~gh~~~V~sva-fSpdg~~lasgs~Dg~I~i~~~~~~~~---~~s~s~d~~i~~~~  551 (630)
                      .+.+|.+.-  +. ...++. .....+...|..+. +..+...-+.+.. ..+  ........   ...+..+..+   +
T Consensus       166 ~v~~fkIlp~~~g~f~v~~~-~~~~~~~~~i~~I~~i~~~~G~~a~At~-~~~--~~l~~g~~i~g~vVvvSe~~i---r  238 (395)
T PF08596_consen  166 NVLTFKILPSSNGRFSVQFA-GATTNHDSPILSIIPINADTGESALATI-SAM--QGLSKGISIPGYVVVVSESDI---R  238 (395)
T ss_dssp             EEEEEEEEE-GGG-EEEEEE-EEE--SS----EEEEEETTT--B-B-BH-HHH--HGGGGT----EEEEEE-SSEE---E
T ss_pred             CEEEEEEecCCCCceEEEEe-eccccCCCceEEEEEEECCCCCcccCch-hHh--hccccCCCcCcEEEEEcccce---E
Confidence            999998741  11 111111 11112333333322 2111110000000 000  00000000   0011111112   5


Q ss_pred             EEeC-CCCceEEeccCCCCEEEEEEc-----CC-CeEEEEECCCcEEEEeCCCCcEEEEEe
Q 006825          552 VFAL-SDKPICSFQGHLDDVLDLSWS-----KS-QHLLSSSMDKTVRLWHLSSKTCLKIFS  605 (630)
Q Consensus       552 Vwdl-sgk~l~tL~GHs~~V~sLafS-----Pd-~~LaSgS~DgtVrIWDl~tg~~l~t~~  605 (630)
                      ++.. +.+..+......-.+..+.+-     .. ..|+.-..+|.|+++-+..-+.+..+.
T Consensus       239 v~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~  299 (395)
T PF08596_consen  239 VFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVS  299 (395)
T ss_dssp             EE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE
T ss_pred             EEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhccc
Confidence            6665 444444433222223344453     23 677888899999999999988777765

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=87.47  E-value=16  Score=40.84  Aligned_cols=148  Identities=16%  Similarity=0.143  Sum_probs=87.1

Q ss_pred             eEecccCcCEEEEEEccCCCEEEEEe---CC-CcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEe-eCC
Q 006825          450 QEIQAHNGSIWSIKFSLDGRYLASAG---ED-CVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPK-HLD  524 (630)
Q Consensus       450 ~tL~gHt~~V~sVaFSpDG~~LASgS---~D-gtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasg-s~D  524 (630)
                      +.+..-...+..-+|+|+++.++--.   .. ..+.++++.+++....+-   +.   ..-...+|+|||+.++.+ ..|
T Consensus       186 ~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~---~~---g~~~~P~fspDG~~l~f~~~rd  259 (425)
T COG0823         186 QKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN---FN---GNNGAPAFSPDGSKLAFSSSRD  259 (425)
T ss_pred             eEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec---cC---CccCCccCCCCCCEEEEEECCC
Confidence            34444556788889999998766652   22 458999999888766542   22   333457899999887765 455


Q ss_pred             CeeeeecccccccccccccCccccccEEEeCCCCceEEeccCCCCEEEEEEcCC-CeEEEEE-CCCcEEEE--eCCCCcE
Q 006825          525 NHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSS-MDKTVRLW--HLSSKTC  600 (630)
Q Consensus       525 g~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL~GHs~~V~sLafSPd-~~LaSgS-~DgtVrIW--Dl~tg~~  600 (630)
                      +...+                     .+.++.++.+..|..-.+.-..=.|+|| ++|+-.+ ..|.=.||  ++..+..
T Consensus       260 g~~~i---------------------y~~dl~~~~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~  318 (425)
T COG0823         260 GSPDI---------------------YLMDLDGKNLPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV  318 (425)
T ss_pred             CCccE---------------------EEEcCCCCcceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce
Confidence            55422                     4555655555554433333336678999 6666444 45554555  4444443


Q ss_pred             EE-EEecCCceEEEE-cCCCcEEEEec
Q 006825          601 LK-IFSHSDYDISLV-DRLMLRFAYGA  625 (630)
Q Consensus       601 l~-t~~H~~~V~sVa-s~~~~~lAsgs  625 (630)
                      .+ ++.-.... .-. +|++..++..+
T Consensus       319 ~riT~~~~~~~-~p~~SpdG~~i~~~~  344 (425)
T COG0823         319 TRLTFSGGGNS-NPVWSPDGDKIVFES  344 (425)
T ss_pred             eEeeccCCCCc-CccCCCCCCEEEEEe
Confidence            22 22222222 222 78888877765

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=87.04  E-value=2.1  Score=32.30  Aligned_cols=33  Identities=24%  Similarity=0.272  Sum_probs=27.0

Q ss_pred             cCEEEEEEccCC---CEEEEEeCCCcEEEEECcCCc
Q 006825          457 GSIWSIKFSLDG---RYLASAGEDCVIHVWQVVESE  489 (630)
Q Consensus       457 ~~V~sVaFSpDG---~~LASgS~DgtIrVWDl~tg~  489 (630)
                      ++|.+++|+|..   .+|+-+-.-+.|.|+|+++..
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~f   36 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSNF   36 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccCc
Confidence            579999999854   488888777899999998643

It contains a characteristic DLL sequence motif.

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=86.75  E-value=50  Score=35.59  Aligned_cols=79  Identities=15%  Similarity=0.146  Sum_probs=41.7

Q ss_pred             EEEEEeCCCCcccceeeeeEecccCcCEEE-EEEccCCCE-EEEEeCC--CcEEEEECcCC--ceeeeeecccccCcccc
Q 006825          432 RVRQYGKSCKDLTALYKCQEIQAHNGSIWS-IKFSLDGRY-LASAGED--CVIHVWQVVES--ERKGELLEKQEDGHLNM  505 (630)
Q Consensus       432 ~VriWd~~~~el~~~~~v~tL~gHt~~V~s-VaFSpDG~~-LASgS~D--gtIrVWDl~tg--~~~~~l~~~~~~gh~~~  505 (630)
                      .|.+++...+.      .+.|....-.|.. +.|+++++. .++|..+  ..-+||-+.-.  ..+..|. .....|   
T Consensus       261 hly~~~~~~~~------~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT-~~~~~~---  330 (353)
T PF00930_consen  261 HLYLYDLDGGK------PRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLT-CEDGDH---  330 (353)
T ss_dssp             EEEEEETTSSE------EEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESS-TTSSTT---
T ss_pred             EEEEEcccccc------eeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEecc-CCCCCc---
Confidence            45555665553      3345555566744 677887664 4456543  34555554332  3333321 111222   


Q ss_pred             eEEEEECCCCCEEEEe
Q 006825          506 LLLANGSPEPTSLSPK  521 (630)
Q Consensus       506 V~svafSpdg~~lasg  521 (630)
                       ..+.|+|++++++-.
T Consensus       331 -~~~~~Spdg~y~v~~  345 (353)
T PF00930_consen  331 -YSASFSPDGKYYVDT  345 (353)
T ss_dssp             -EEEEE-TTSSEEEEE
T ss_pred             -eEEEECCCCCEEEEE
Confidence             789999999988764

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=85.13  E-value=45  Score=37.39  Aligned_cols=140  Identities=12%  Similarity=-0.074  Sum_probs=64.0

Q ss_pred             ecCCCccEecccCCCCceeEEecCCccC-CEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCcE
Q 006825          354 GNKDSFDLNNNGSSGGGMKSKKKGSWFK-SIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVR  432 (630)
Q Consensus       354 gS~D~tvr~vWD~~tG~~~~~lk~gH~~-~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~  432 (630)
                      +..-.++. +||+.+.+.++++..|-.+ -...|-|..+-.                          ...+++.+.-..+
T Consensus       218 ~~yG~~l~-vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~--------------------------~~~gFvg~aLss~  270 (461)
T PF05694_consen  218 GKYGHSLH-VWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPD--------------------------ANYGFVGCALSSS  270 (461)
T ss_dssp             H-S--EEE-EEETTTTEEEEEEES-TTEEEEEEEEE-SSTT----------------------------EEEEEEE--EE
T ss_pred             ccccCeEE-EEECCCCcEeeEEecCCCCCceEEEEecCCCC--------------------------ccceEEEEeccce
Confidence            34457777 9999999999998865433 234566665421                          1112333333445


Q ss_pred             EEEEeC-CCCcccceeeeeEecc-----------------cCcCEEEEEEccCCCEEEEEe-CCCcEEEEECcCCceee-
Q 006825          433 VRQYGK-SCKDLTALYKCQEIQA-----------------HNGSIWSIKFSLDGRYLASAG-EDCVIHVWQVVESERKG-  492 (630)
Q Consensus       433 VriWd~-~~~el~~~~~v~tL~g-----------------Ht~~V~sVaFSpDG~~LASgS-~DgtIrVWDl~tg~~~~-  492 (630)
                      |+.|-. ..++... ..+.++..                 -..-|+.|.+|.|.++|.... .+|.||.||+.+....+ 
T Consensus       271 i~~~~k~~~g~W~a-~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl  349 (461)
T PF05694_consen  271 IWRFYKDDDGEWAA-EKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKL  349 (461)
T ss_dssp             EEEEEE-ETTEEEE-EEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EE
T ss_pred             EEEEEEcCCCCeee-eEEEECCCcccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcE
Confidence            555533 2222211 12222211                 135689999999999887655 78999999998754332 


Q ss_pred             --eeeccccc-----------CcccceEEEEECCCCCEEEEe
Q 006825          493 --ELLEKQED-----------GHLNMLLLANGSPEPTSLSPK  521 (630)
Q Consensus       493 --~l~~~~~~-----------gh~~~V~svafSpdg~~lasg  521 (630)
                        ++......           .-.+....+..|.||+.+...
T Consensus       350 ~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvT  391 (461)
T PF05694_consen  350 VGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVT  391 (461)
T ss_dssp             EEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE
T ss_pred             EeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEE
Confidence              22211100           011233577788888776654

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=84.77  E-value=29  Score=37.68  Aligned_cols=66  Identities=9%  Similarity=0.022  Sum_probs=36.6

Q ss_pred             CcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCc----eeeeeecccccC---cccceEEEEECCCCCEEEEeeC
Q 006825          456 NGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESE----RKGELLEKQEDG---HLNMLLLANGSPEPTSLSPKHL  523 (630)
Q Consensus       456 t~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~----~~~~l~~~~~~g---h~~~V~svafSpdg~~lasgs~  523 (630)
                      ......|+|.++| ++++ .....+++.+.....    ....+.......   +......+++.|||.++++-+.
T Consensus        71 l~~p~Gi~~~~~G-lyV~-~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~  143 (367)
T TIGR02604        71 LSMVTGLAVAVGG-VYVA-TPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGN  143 (367)
T ss_pred             CCCccceeEecCC-EEEe-CCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEeccc
Confidence            3456889999999 5554 444444454553211    111222111111   2345778999999998877553

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=82.82  E-value=63  Score=33.51  Aligned_cols=206  Identities=11%  Similarity=-0.004  Sum_probs=93.1

Q ss_pred             eeecCccceeEEEeec---ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccccCC
Q 006825          334 MCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGG  410 (630)
Q Consensus       334 ~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh  410 (630)
                      .+.|-..-+..|.+.|   .|++-.+..... ++=..+|+.+++....-.+-.-.|++.-+|.++++.            
T Consensus        16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i-~els~~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~------------   82 (248)
T PF06977_consen   16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEI-YELSLDGKVLRRIPLDGFGDYEGITYLGNGRYVLSE------------   82 (248)
T ss_dssp             E-TT--S-EEEEEEETTTTEEEEEETTTTEE-EEEETT--EEEEEE-SS-SSEEEEEE-STTEEEEEE------------
T ss_pred             ECCCccCCccccEEcCCCCeEEEEECCCCEE-EEEcCCCCEEEEEeCCCCCCceeEEEECCCEEEEEE------------
Confidence            3445445577888877   344444433333 332235776666653334556667776666555432            


Q ss_pred             cceEEEeecCCCeEEEecCCcEEEEEeCC--CCcccce--ee--eeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEE
Q 006825          411 RRSSSATDDSQDVSFHGQERVRVRQYGKS--CKDLTAL--YK--CQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQ  484 (630)
Q Consensus       411 ~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~--~~el~~~--~~--v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWD  484 (630)
                                       -.++.+.++...  +..+...  ..  +.....+...+-.|+|.+.++.|+.+-+..-.+|+.
T Consensus        83 -----------------Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~  145 (248)
T PF06977_consen   83 -----------------ERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYE  145 (248)
T ss_dssp             -----------------TTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEE
T ss_pred             -----------------cCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEE
Confidence                             123334444331  1111000  00  011123566799999999888788888887788887


Q ss_pred             CcC---Cceeeeeeccc---ccCcccceEEEEECCC-CCEEEEeeCCCeeeeecccccccccccccCccccccEEEeCCC
Q 006825          485 VVE---SERKGELLEKQ---EDGHLNMLLLANGSPE-PTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSD  557 (630)
Q Consensus       485 l~t---g~~~~~l~~~~---~~gh~~~V~svafSpd-g~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsg  557 (630)
                      +..   ...........   ......-+..++++|. +.+++-......|                       ..++..|
T Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l-----------------------~~~d~~G  202 (248)
T PF06977_consen  146 VNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLL-----------------------LELDRQG  202 (248)
T ss_dssp             EESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEE-----------------------EEE-TT-
T ss_pred             EccccCccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeE-----------------------EEECCCC
Confidence            754   22221111000   1223345678999988 4555555555555                       4455566


Q ss_pred             CceEEec--c--C-----CCCEEEEEEcCCCeEEEEECCCcEEE
Q 006825          558 KPICSFQ--G--H-----LDDVLDLSWSKSQHLLSSSMDKTVRL  592 (630)
Q Consensus       558 k~l~tL~--G--H-----s~~V~sLafSPd~~LaSgS~DgtVrI  592 (630)
                      +++..+.  .  |     -..--.|+|.+++.|.-.|.-+..++
T Consensus       203 ~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvsEpNlfy~  246 (248)
T PF06977_consen  203 RVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVSEPNLFYR  246 (248)
T ss_dssp             -EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEETTTEEEE
T ss_pred             CEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEcCCceEEE
Confidence            6554432  1  1     12457899998855555556554443

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=82.33  E-value=22  Score=40.41  Aligned_cols=151  Identities=10%  Similarity=0.067  Sum_probs=95.6

Q ss_pred             eEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCC--EE-----EEEeCCCcEEEEEC
Q 006825          413 SSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGR--YL-----ASAGEDCVIHVWQV  485 (630)
Q Consensus       413 ~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~--~L-----ASgS~DgtIrVWDl  485 (630)
                      .+.-.+.+...+.++.....++..|+..+++     +.+.+-|.. |.-+.|.|+.+  .|     +.|-.|..|.-||.
T Consensus       338 ~mL~~~dsnlil~~~~~~~~l~klDIE~GKI-----VeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDp  411 (644)
T KOG2395|consen  338 AMLHRADSNLILMDGGEQDKLYKLDIERGKI-----VEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDP  411 (644)
T ss_pred             hhhhccccceEeeCCCCcCcceeeeccccee-----eeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecc
Confidence            4444455555577888888899999988864     566777776 88888888754  12     23556788888998


Q ss_pred             cCCceeeeeecccccCc----ccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeCCCCceE
Q 006825          486 VESERKGELLEKQEDGH----LNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPIC  561 (630)
Q Consensus       486 ~tg~~~~~l~~~~~~gh----~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~  561 (630)
                      +-... ..|..  ..+|    .....|.+-..+| +|+.|+.+|.|                       ++|+-.+...+
T Consensus       412 Rv~~~-~kl~~--~q~kqy~~k~nFsc~aTT~sG-~IvvgS~~GdI-----------------------RLYdri~~~AK  464 (644)
T KOG2395|consen  412 RVQGK-NKLAV--VQSKQYSTKNNFSCFATTESG-YIVVGSLKGDI-----------------------RLYDRIGRRAK  464 (644)
T ss_pred             cccCc-ceeee--eeccccccccccceeeecCCc-eEEEeecCCcE-----------------------Eeehhhhhhhh
Confidence            63221 11110  1222    2334455555555 67888999999                       55554333322


Q ss_pred             -EeccCCCCEEEEEEcCCCeEEEEECCCcEEEEeCC
Q 006825          562 -SFQGHLDDVLDLSWSKSQHLLSSSMDKTVRLWHLS  596 (630)
Q Consensus       562 -tL~GHs~~V~sLafSPd~~LaSgS~DgtVrIWDl~  596 (630)
                       .|.|-..+|..|..+.++..+-|..+.++.|-++.
T Consensus       465 TAlPgLG~~I~hVdvtadGKwil~Tc~tyLlLi~t~  500 (644)
T KOG2395|consen  465 TALPGLGDAIKHVDVTADGKWILATCKTYLLLIDTL  500 (644)
T ss_pred             hcccccCCceeeEEeeccCcEEEEecccEEEEEEEe
Confidence             35677888999999888444444556777777653

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=81.45  E-value=1e+02  Score=34.95  Aligned_cols=26  Identities=0%  Similarity=0.002  Sum_probs=22.5

Q ss_pred             eEEEEECCCcEEEEeCCCCcEEEEEe
Q 006825          580 HLLSSSMDKTVRLWHLSSKTCLKIFS  605 (630)
Q Consensus       580 ~LaSgS~DgtVrIWDl~tg~~l~t~~  605 (630)
                      +++.++.+|.+...|..+|+.+..+.
T Consensus       303 ~V~~g~~~G~l~ald~~tG~~~W~~~  328 (488)
T cd00216         303 AIVHAPKNGFFYVLDRTTGKLISARP  328 (488)
T ss_pred             EEEEECCCceEEEEECCCCcEeeEeE
Confidence            57788899999999999999887664

The alignment model contains an 8-bladed beta-propeller.

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=80.40  E-value=4.9  Score=46.03  Aligned_cols=38  Identities=29%  Similarity=0.525  Sum_probs=29.1

Q ss_pred             CCEEEEEEcC----C-CeEEEEECCCcEEEEeCCCCcEEEEEe
Q 006825          568 DDVLDLSWSK----S-QHLLSSSMDKTVRLWHLSSKTCLKIFS  605 (630)
Q Consensus       568 ~~V~sLafSP----d-~~LaSgS~DgtVrIWDl~tg~~l~t~~  605 (630)
                      ..+..++++.    + .+|++-+.|+++||||+.+++|++++.
T Consensus       215 ~~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~~~~~~  257 (547)
T PF11715_consen  215 SVAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQCLATID  257 (547)
T ss_dssp             --EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCEEEEEE
T ss_pred             CccceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeEEEEec
Confidence            3455566655    4 899999999999999999999988764

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	630
2ymu_A	577	Structure Of A Highly Repetitive Propeller Structur		5e-04

>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 37/159 (23%), Positives = 67/159 (42%), Gaps = 28/159 (17%)
Query: 449 CQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLL 508
            Q +  H+ S+W + FS DG+ +ASA +D  + +W      R G+LL+    GH + +  
Sbjct: 337 LQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLW-----NRNGQLLQTLT-GHSSSVRG 390
Query: 509 ANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLD 568
              SP+  +++    D  ++   R   +  ++L+     V    F+  D+ I S      
Sbjct: 391 VAFSPDGQTIASASDDKTVKLWNRNGQL-LQTLTGHSSSVWGVAFSPDDQTIAS------ 443
Query: 569 DVLDXXXXXXXXXXXXXMDKTVRLWHLSSKTCLKIFSHS 607
                             DKTV+LW+ + +    +  HS
Sbjct: 444 ---------------ASDDKTVKLWNRNGQLLQTLTGHS 467

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	630
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	99.98
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	99.98
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	99.98
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	99.98
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	99.98
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	99.98
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	99.98
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	99.98
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	99.98
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	99.97
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	99.97
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	99.97
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.97
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	99.97
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	99.97
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	99.97
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.97
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	99.97
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	99.97
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.97
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	99.97
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	99.97
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.97
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	99.97
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.97
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	99.97
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	99.97
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.97
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	99.97
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	99.97
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	99.97
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.97
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	99.97
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	99.97
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	99.97
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.97
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.97
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	99.97
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	99.97
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	99.97
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.97
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	99.97
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	99.97
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	99.97
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	99.96
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.96
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	99.96
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	99.96
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	99.96
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.96
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	99.96
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.96
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.96
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	99.96
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.96
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	99.96
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.96
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	99.96
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.95
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.95
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	99.95
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.95
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.95
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.95
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.95
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.95
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.94
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.94
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.94
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.94
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.94
3jro_A	753	Fusion protein of protein transport protein SEC13	99.94
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.94
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.94
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.93
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.93
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.93
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.93
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.92
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.92
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.91
3jro_A	753	Fusion protein of protein transport protein SEC13	99.9
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.9
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.9
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.89
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.86
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.85
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.83
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.83
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.82
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.82
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.82
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.81
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.79
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.78
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.78
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.78
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.78
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.76
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.75
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.75
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.75
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.74
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.74
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.74
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.74
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.73
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.73
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.73
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.72
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.71
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.71
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.7
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.7
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.68
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.64
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.63
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.62
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.62
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.6
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.6
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.57
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.57
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.56
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.55
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.53
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.52
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.51
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.49
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.49
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.49
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.46
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.43
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.4
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.39
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.38
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.37
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.37
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.35
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.33
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.3
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.29
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.28
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.26
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.26
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.23
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.18
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.17
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.13
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.13
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.13
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.13
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.07
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.0
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.0
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	98.99
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	98.98
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	98.95
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	98.94
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	98.93
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	98.93
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	98.92
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	98.89
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	98.86
2qe8_A	343	Uncharacterized protein; structural genomics, join	98.82
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	98.81
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	98.81
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	98.78
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	98.77
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	98.75
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	98.75
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	98.75
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	98.72
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	98.62
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	98.61
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	98.54
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	98.49
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	98.46
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	98.42
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	98.37
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	98.37
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.2
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.17
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	98.15
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	98.14
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	98.11
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	98.1
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.09
2qe8_A	343	Uncharacterized protein; structural genomics, join	98.09
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	98.08
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	98.05
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	97.89
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	97.87
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	97.82
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	97.75
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	97.73
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	97.67
2ece_A	462	462AA long hypothetical selenium-binding protein;	97.6
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	97.57
2ece_A	462	462AA long hypothetical selenium-binding protein;	97.55
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	97.54
4a2l_A	795	BT_4663, two-component system sensor histidine kin	97.52
4a2l_A	795	BT_4663, two-component system sensor histidine kin	97.5
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	97.49
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	97.39
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	97.36
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	97.34
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	97.33
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	97.31
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	97.16
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	97.01
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	97.0
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	96.96
3v65_B	386	Low-density lipoprotein receptor-related protein;	96.93
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	96.92
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	96.88
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	96.84
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	96.77
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	96.75
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	96.73
3v9f_A	781	Two-component system sensor histidine kinase/RESP	96.7
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	96.68
3v9f_A	781	Two-component system sensor histidine kinase/RESP	96.64
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	96.56
3v65_B	386	Low-density lipoprotein receptor-related protein;	96.53
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	96.48
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	96.43
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	96.43
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	96.42
2p4o_A	306	Hypothetical protein; putative lactonase, structur	96.33
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	96.05
2p4o_A	306	Hypothetical protein; putative lactonase, structur	96.02
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	95.93
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	95.93
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	95.91
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	95.89
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	95.56
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	95.48
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	95.33
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	95.31
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	95.3
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	95.22
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	94.86
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	94.6
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	94.58
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	94.52
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	94.32
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	93.93
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	93.72
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	93.48
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	93.44
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	92.51
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	92.31
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	92.13
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	92.05
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	92.01
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	92.0
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	91.99
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	91.89
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	91.65
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	89.15
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	87.31
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	86.7
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	85.92
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	85.37
3kya_A	496	Putative phosphatase; structural genomics, joint c	83.15
3kya_A	496	Putative phosphatase; structural genomics, joint c	82.63
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	82.51
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	80.37

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=8.5e-38  Score=353.23  Aligned_cols=340  Identities=16%  Similarity=0.148  Sum_probs=265.5

Q ss_pred             eeecCCCCcccCCCccccccCCCCCcccccccEEEEECCCCcEEEEee------------ecCCCc-----------eeE
Q 006825          261 MSINGNGNYIGNSGEVVEDFDGNGTAGVAEQGCLIKNLDNGKEFVVNE------------IQEDGT-----------WKK  317 (630)
Q Consensus       261 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~LddG~~~~v~e------------~~~dg~-----------~~~  317 (630)
                      +++||||+||              +++..++.++||++..++..+...            +..||.           ...
T Consensus        65 ~~~spdg~~l--------------asg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~  130 (611)
T 1nr0_A           65 AKTSPSGYYC--------------ASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGH  130 (611)
T ss_dssp             EEECTTSSEE--------------EEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEE
T ss_pred             EEECCCCcEE--------------EEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCceeE
Confidence            7999999999              777788899999997654322111            111221           112


Q ss_pred             EEEcCCCceEeeecceeeecCccceeEEEeec----ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCC
Q 006825          318 VKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQ----NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGH  393 (630)
Q Consensus       318 l~dv~TG~~lt~eef~~l~GHs~~V~~Lafs~----~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~  393 (630)
                      ++.-.+|+.+     .++.||...|.+++|+|    .|++|+.|++++ +||..+++++.++. +|...|.+|+|+|+|+
T Consensus       131 v~~wd~~~~~-----~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~-lwd~~~~~~~~~l~-~H~~~V~~v~fspdg~  203 (611)
T 1nr0_A          131 VFLFDTGTSN-----GNLTGQARAMNSVDFKPSRPFRIISGSDDNTVA-IFEGPPFKFKSTFG-EHTKFVHSVRYNPDGS  203 (611)
T ss_dssp             EEETTTCCBC-----BCCCCCSSCEEEEEECSSSSCEEEEEETTSCEE-EEETTTBEEEEEEC-CCSSCEEEEEECTTSS
T ss_pred             EEEeeCCCCc-----ceecCCCCCceEEEECCCCCeEEEEEeCCCeEE-EEECCCCeEeeeec-cccCceEEEEECCCCC
Confidence            3333355554     67899999999999998    499999999999 99999999999998 9999999999999999


Q ss_pred             eEEeecCCC-----C--Ccc----c-c------CCcceEEEeecCCCe--EEEecCCcEEEEEeCCCCcccce-------
Q 006825          394 KERRSSDER-----D--TSS----E-K------GGRRSSSATDDSQDV--SFHGQERVRVRQYGKSCKDLTAL-------  446 (630)
Q Consensus       394 ~lasgS~D~-----d--t~s----~-~------gh~~~Vsa~~~s~d~--l~Sgs~Dg~VriWd~~~~el~~~-------  446 (630)
                      +|++++.|+     +  ++.    + .      +|...|.+++|++++  +++++.|++|++||+.+++....       
T Consensus       204 ~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~  283 (611)
T 1nr0_A          204 LFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRI  283 (611)
T ss_dssp             EEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSG
T ss_pred             EEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCc
Confidence            999999987     1  111    2 2      799999999999988  99999999999999986543211       


Q ss_pred             -------------------------------eeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeee
Q 006825          447 -------------------------------YKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELL  495 (630)
Q Consensus       447 -------------------------------~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~  495 (630)
                                                     .+.+.+.+|...|++++|+|||++|+|++.|++|++||+.++.....+ 
T Consensus       284 ~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~-  362 (611)
T 1nr0_A          284 EDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVF-  362 (611)
T ss_dssp             GGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECS-
T ss_pred             cceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeec-
Confidence                                           123567899999999999999999999999999999999988776553 


Q ss_pred             cccccCcccceEEEEECCCCCEEEEeeCCCeeeeeccccccc--------------------------------------
Q 006825          496 EKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSIN--------------------------------------  537 (630)
Q Consensus       496 ~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~--------------------------------------  537 (630)
                         ..+|...|.+++|++++ .+++++.|+++++|+......                                      
T Consensus       363 ---~~~h~~~v~~~~~s~~~-~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~  438 (611)
T 1nr0_A          363 ---PDVHATMITGIKTTSKG-DLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYS  438 (611)
T ss_dssp             ---SCSCSSCEEEEEECTTS-CEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEE
T ss_pred             ---ccCCcceEEEEEECCCC-cEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEe
Confidence               26788889999999776 566778888888887543110                                      


Q ss_pred             --------------ccccccCcccc-------ccEEEeCCCCc---eEEeccCCCCEEEEEEcCC-CeEEEEECCCcEEE
Q 006825          538 --------------RKSLSLDHMVV-------PETVFALSDKP---ICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRL  592 (630)
Q Consensus       538 --------------~~s~s~d~~i~-------~~~Vwdlsgk~---l~tL~GHs~~V~sLafSPd-~~LaSgS~DgtVrI  592 (630)
                                    ...+++++...       .-++|++.+..   +.+ .+|...|++|+|+|+ ++|++++.|++|++
T Consensus       439 ~~~~~~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~-~~h~~~v~~v~fspdg~~las~s~d~~v~~  517 (611)
T 1nr0_A          439 HGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKT-IVHPAEITSVAFSNNGAFLVATDQSRKVIP  517 (611)
T ss_dssp             TTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEE-EECSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred             CCceeeeecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceeeeec-cCCCCceEEEEECCCCCEEEEEcCCCCEEE
Confidence                          01122222211       11788884432   233 689999999999999 99999999999999


Q ss_pred             EeCCC-CcEEEE--Ee-cCCceEEEE-cCCCcEEEEecce
Q 006825          593 WHLSS-KTCLKI--FS-HSDYDISLV-DRLMLRFAYGAFL  627 (630)
Q Consensus       593 WDl~t-g~~l~t--~~-H~~~V~sVa-s~~~~~lAsgs~~  627 (630)
                      |++.+ ++++.+  +. |...|++|+ +|++..|++++.+
T Consensus       518 w~~~~~~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D  557 (611)
T 1nr0_A          518 YSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLD  557 (611)
T ss_dssp             EEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETT
T ss_pred             EEcCCCCceeeeeeeeecccceeEEEECCCCCEEEEEECC
Confidence            99988 666654  44 999999999 9999999998765

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=2e-37  Score=318.78  Aligned_cols=265  Identities=13%  Similarity=0.072  Sum_probs=235.5

Q ss_pred             ecceeeecCccceeEEEeec---ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCC----
Q 006825          330 EEFEMCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDER----  402 (630)
Q Consensus       330 eef~~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~----  402 (630)
                      +...+|.||+..|.+|+|+|   .|++|+.|++++ +||+.++..+..+. +|...|++++|+|+|+++++++.|+    
T Consensus         4 ~~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~-lWd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~s~d~~i~v   81 (304)
T 2ynn_A            4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVE-LWNYETQVEVRSIQ-VTETPVRAGKFIARKNWIIVGSDDFRIRV   81 (304)
T ss_dssp             CCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEE-EEETTTTEEEEEEE-CCSSCEEEEEEEGGGTEEEEEETTSEEEE
T ss_pred             eeEEeecCCCCceEEEEECCCCCEEEEEcCCCcEE-EEECCCCceeEEee-ccCCcEEEEEEeCCCCEEEEECCCCEEEE
Confidence            34478899999999999999   799999999999 99999999999998 9999999999999999999999997    


Q ss_pred             ---CCc----cccCCcceEEEeecCCCe--EEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEcc-CCCEEE
Q 006825          403 ---DTS----SEKGGRRSSSATDDSQDV--SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSL-DGRYLA  472 (630)
Q Consensus       403 ---dt~----s~~gh~~~Vsa~~~s~d~--l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSp-DG~~LA  472 (630)
                         .+.    .+.+|...|.++++++++  +++|+.|++|++||+..+.    .+.+.+.+|...|.+++|+| ++.+|+
T Consensus        82 wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~----~~~~~~~~h~~~v~~v~~~p~~~~~l~  157 (304)
T 2ynn_A           82 FNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNW----ALEQTFEGHEHFVMCVAFNPKDPSTFA  157 (304)
T ss_dssp             EETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTT----EEEEEECCCCSCEEEEEECTTCTTEEE
T ss_pred             EECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCc----chhhhhcccCCcEEEEEECCCCCCEEE
Confidence               222    278899999999999987  8999999999999987552    24577899999999999999 789999


Q ss_pred             EEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECC--CCCEEEEeeCCCeeeeecccccccccccccCcccccc
Q 006825          473 SAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSP--EPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPE  550 (630)
Q Consensus       473 SgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSp--dg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~  550 (630)
                      +|+.|++|+|||+.++.....+    ..+|...+..+.|+|  ++.++++++.|++|                       
T Consensus       158 sgs~D~~v~iwd~~~~~~~~~~----~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i-----------------------  210 (304)
T 2ynn_A          158 SGCLDRTVKVWSLGQSTPNFTL----TTGQERGVNYVDYYPLPDKPYMITASDDLTI-----------------------  210 (304)
T ss_dssp             EEETTSEEEEEETTCSSCSEEE----ECCCTTCEEEEEECCSTTCCEEEEEETTSEE-----------------------
T ss_pred             EEeCCCeEEEEECCCCCcccee----ccCCcCcEEEEEEEEcCCCCEEEEEcCCCeE-----------------------
Confidence            9999999999999887766554    356778889999986  68899999999999                       


Q ss_pred             EEEeC-CCCceEEeccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCCCcEEEEEe-cCCceEEEE-cCCCc--EEEEe
Q 006825          551 TVFAL-SDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYDISLV-DRLML--RFAYG  624 (630)
Q Consensus       551 ~Vwdl-sgk~l~tL~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg~~l~t~~-H~~~V~sVa-s~~~~--~lAsg  624 (630)
                      ++|++ +++++.++.+|...|.+++|+|+ .+|+||+.|++|+|||+.++++++++. |...|++++ .|.+.  +++++
T Consensus       211 ~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asg  290 (304)
T 2ynn_A          211 KIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASG  290 (304)
T ss_dssp             EEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCSSSSEEEEEECTTCGGGCEEEE
T ss_pred             EEEeCCCCccceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeeccCCCccEEEEEECCCCCceEEEEe
Confidence            88888 77899999999999999999999 999999999999999999999999998 999999999 66653  57776


Q ss_pred             cce
Q 006825          625 AFL  627 (630)
Q Consensus       625 s~~  627 (630)
                      ...
T Consensus       291 ~~~  293 (304)
T 2ynn_A          291 FDN  293 (304)
T ss_dssp             ETT
T ss_pred             cCC
Confidence            543

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=4e-37  Score=330.82  Aligned_cols=261  Identities=18%  Similarity=0.248  Sum_probs=240.9

Q ss_pred             ceeeecCccceeEEEeec---ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCC-----C
Q 006825          332 FEMCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDER-----D  403 (630)
Q Consensus       332 f~~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~-----d  403 (630)
                      ...+.||...|++++|+|   .|++|+.|++|+ +||+.+|+.+.+++ +|...|.+|+|+|+|+++++|+.|+     +
T Consensus       101 ~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~-vwd~~~~~~~~~l~-~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd  178 (410)
T 1vyh_C          101 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIK-VWDYETGDFERTLK-GHTDSVQDISFDHSGKLLASCSADMTIKLWD  178 (410)
T ss_dssp             SCEEECCSSCEEEEEECSSSSEEEEEESSSCEE-EEETTTCCCCEEEC-CCSSCEEEEEECTTSSEEEEEETTSCCCEEE
T ss_pred             eEeecccCCcEEEEEEcCCCCEEEEEeCCCeEE-EEECCCCcEEEEEe-ccCCcEEEEEEcCCCCEEEEEeCCCeEEEEe
Confidence            356889999999999998   799999999999 99999999999999 9999999999999999999999997     1


Q ss_pred             --C----ccccCCcceEEEeecCCCe--EEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEe
Q 006825          404 --T----SSEKGGRRSSSATDDSQDV--SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAG  475 (630)
Q Consensus       404 --t----~s~~gh~~~Vsa~~~s~d~--l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS  475 (630)
                        +    ..+.+|...|.++.+.+++  +++|+.|++|++||+.++.     ++.++.+|...|.+++|+|+|++|++|+
T Consensus       179 ~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~-----~~~~~~~h~~~v~~~~~~~~g~~l~s~s  253 (410)
T 1vyh_C          179 FQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGY-----CVKTFTGHREWVRMVRPNQDGTLIASCS  253 (410)
T ss_dssp             TTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCC-----EEEEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred             CCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCc-----EEEEEeCCCccEEEEEECCCCCEEEEEc
Confidence              1    2267899999999999887  9999999999999998764     5788999999999999999999999999


Q ss_pred             CCCcEEEEECcCCceeeeeecccccCcccceEEEEECCC--------------------CCEEEEeeCCCeeeeeccccc
Q 006825          476 EDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPE--------------------PTSLSPKHLDNHLEKKRRGRS  535 (630)
Q Consensus       476 ~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpd--------------------g~~lasgs~Dg~I~i~~~~~~  535 (630)
                      .|++|+|||+.++++...+     .+|...|.+++|+|+                    +.++++++.|+.|        
T Consensus       254 ~D~~v~vwd~~~~~~~~~~-----~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i--------  320 (410)
T 1vyh_C          254 NDQTVRVWVVATKECKAEL-----REHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTI--------  320 (410)
T ss_dssp             TTSCEEEEETTTCCEEEEE-----CCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEE--------
T ss_pred             CCCeEEEEECCCCceeeEe-----cCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeE--------
Confidence            9999999999998887774     789999999999996                    6789999999999        


Q ss_pred             ccccccccCccccccEEEeC-CCCceEEeccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCCCcEEEEEe-cCCceEE
Q 006825          536 INRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYDIS  612 (630)
Q Consensus       536 ~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg~~l~t~~-H~~~V~s  612 (630)
                                     ++|++ +++++.++.+|...|++++|+|+ .+|++|+.|++|+|||+.+++++.++. |...|++
T Consensus       321 ---------------~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~  385 (410)
T 1vyh_C          321 ---------------KMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTS  385 (410)
T ss_dssp             ---------------EEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEE
T ss_pred             ---------------EEEECCCCceEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEE
Confidence                           88888 78899999999999999999999 999999999999999999999999998 9999999


Q ss_pred             EE-cCCCcEEEEecce
Q 006825          613 LV-DRLMLRFAYGAFL  627 (630)
Q Consensus       613 Va-s~~~~~lAsgs~~  627 (630)
                      ++ ++.+..+++++.+
T Consensus       386 l~~~~~~~~l~sgs~D  401 (410)
T 1vyh_C          386 LDFHKTAPYVVTGSVD  401 (410)
T ss_dssp             EEECSSSSCEEEEETT
T ss_pred             EEEcCCCCEEEEEeCC
Confidence            99 8888888888755

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=1.4e-36  Score=343.25  Aligned_cols=293  Identities=15%  Similarity=0.166  Sum_probs=243.2

Q ss_pred             EEEEcCCCceEeeecceeeecCccceeEEEeec---ceEeecCCCccEecccCCCCc--eeEEecCCccCCEEEEEEcCC
Q 006825          317 KVKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGG--MKSKKKGSWFKSIRTVASSVT  391 (630)
Q Consensus       317 ~l~dv~TG~~lt~eef~~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~--~~~~lk~gH~~~V~sVAfSpd  391 (630)
                      ++|++.+++.+     .++.||...|++++|+|   +||+|+.|++|+ |||+.+++  .+.++. +|.+.|++|+|+|+
T Consensus        42 ~l~~~~~~~~~-----~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~-lWd~~~~~~~~~~~~~-~~~~~v~~v~fs~d  114 (611)
T 1nr0_A           42 YTVPVGSLTDT-----EIYTEHSHQTTVAKTSPSGYYCASGDVHGNVR-IWDTTQTTHILKTTIP-VFSGPVKDISWDSE  114 (611)
T ss_dssp             EEEETTCSSCC-----EEECCCSSCEEEEEECTTSSEEEEEETTSEEE-EEESSSTTCCEEEEEE-CSSSCEEEEEECTT
T ss_pred             EEecCCCcccC-----eEecCCCCceEEEEECCCCcEEEEEeCCCCEE-EeECCCCcceeeEeec-ccCCceEEEEECCC
Confidence            45555555555     67889999999999999   899999999999 99997654  455677 89999999999999


Q ss_pred             CCeEEeecCCC---------C----CccccCCcceEEEeecCCCe---EEEecCCcEEEEEeCCCCcccceeeeeEeccc
Q 006825          392 GHKERRSSDER---------D----TSSEKGGRRSSSATDDSQDV---SFHGQERVRVRQYGKSCKDLTALYKCQEIQAH  455 (630)
Q Consensus       392 G~~lasgS~D~---------d----t~s~~gh~~~Vsa~~~s~d~---l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gH  455 (630)
                      |++|++++.++         +    ...+.+|...|.+++|++++   +++++.|++|++|+....+     ++++|.+|
T Consensus       115 g~~l~~~~~~~~~~~~v~~wd~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~-----~~~~l~~H  189 (611)
T 1nr0_A          115 SKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFK-----FKSTFGEH  189 (611)
T ss_dssp             SCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBE-----EEEEECCC
T ss_pred             CCEEEEEECCCCceeEEEEeeCCCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCe-----Eeeeeccc
Confidence            99999887653         1    23378999999999999975   8999999999999976543     56789999


Q ss_pred             CcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeec--ccccCcccceEEEEECCCCCEEEEeeCCCeeeeeccc
Q 006825          456 NGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLE--KQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRG  533 (630)
Q Consensus       456 t~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~--~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~  533 (630)
                      ...|++++|+|||++||||+.|++|+|||+.+++.+..+..  ....+|...|.+++|+|++++|++++.|++|++|+..
T Consensus       190 ~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~  269 (611)
T 1nr0_A          190 TKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVA  269 (611)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred             cCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence            99999999999999999999999999999999988776421  0112899999999999999999999999999999976


Q ss_pred             ccccccc-----------------------cccCccccccEEEeC-CCCceEEeccCCCCEEEEEEcCC-CeEEEEECCC
Q 006825          534 RSINRKS-----------------------LSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDK  588 (630)
Q Consensus       534 ~~~~~~s-----------------------~s~d~~i~~~~Vwdl-sgk~l~tL~GHs~~V~sLafSPd-~~LaSgS~Dg  588 (630)
                      .......                       .+.++.+   ++|+. .++++..+.||...|++++|+|+ ++|++++.|+
T Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i---~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~  346 (611)
T 1nr0_A          270 TLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFI---NFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEG  346 (611)
T ss_dssp             TTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCE---EEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             CCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcE---EEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCC
Confidence            5322211                       2223333   78888 56778889999999999999999 9999999999


Q ss_pred             cEEEEeCCCCcEEEEEe--cCCceEEEE-cCCCcEEEEec
Q 006825          589 TVRLWHLSSKTCLKIFS--HSDYDISLV-DRLMLRFAYGA  625 (630)
Q Consensus       589 tVrIWDl~tg~~l~t~~--H~~~V~sVa-s~~~~~lAsgs  625 (630)
                      +|++||+.++++...+.  |...|.+++ .+.+. +++++
T Consensus       347 ~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~-l~s~s  385 (611)
T 1nr0_A          347 HINSWDISTGISNRVFPDVHATMITGIKTTSKGD-LFTVS  385 (611)
T ss_dssp             CEEEEETTTCCEEECSSCSCSSCEEEEEECTTSC-EEEEE
T ss_pred             cEEEEECCCCceeeecccCCcceEEEEEECCCCc-EEEEE
Confidence            99999999999988874  999999999 55544 44443

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=3.6e-36  Score=332.05  Aligned_cols=306  Identities=20%  Similarity=0.277  Sum_probs=259.7

Q ss_pred             ceeecCCCCcccCCCccccccCCCCCcccccccEEEEEC---------------------CCCcEEEEeeecCCCceeEE
Q 006825          260 SMSINGNGNYIGNSGEVVEDFDGNGTAGVAEQGCLIKNL---------------------DNGKEFVVNEIQEDGTWKKV  318 (630)
Q Consensus       260 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~L---------------------ddG~~~~v~e~~~dg~~~~l  318 (630)
                      ++.++|||++|+              ++..++.++||++                     .+|+.+++..  .|+. .++
T Consensus       226 ~~~~s~dg~~l~--------------~~~~d~~i~~w~~~~~~~~~~~~~~~~v~~v~~~~d~~~l~~~~--~d~~-i~~  288 (577)
T 2ymu_A          226 GVAFSPDGQTIA--------------SASDDKTVKLWNRNGQLLQTLTGHSSSVNGVAFRPDGQTIASAS--DDKT-VKL  288 (577)
T ss_dssp             EEEECTTSSCEE--------------EEETTSCEEEECTTSCEEEEECCCSSCEEEEEECTTSSEEEEEE--TTSC-EEE
T ss_pred             EEEECCCCCEEE--------------EEeCCCEEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCEEEEEe--CCCE-EEE
Confidence            478999999993              3344555666654                     2344443322  2333 567


Q ss_pred             EEcCCCceEeeecceeeecCccceeEEEeec---ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeE
Q 006825          319 KEVGTGRQLTIEEFEMCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKE  395 (630)
Q Consensus       319 ~dv~TG~~lt~eef~~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~l  395 (630)
                      |+. +++.+     ..+.||...|.+++|+|   .+++++.|++++ +||.. +..+.++. +|...|.+++|+|+|+++
T Consensus       289 w~~-~~~~~-----~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~-~w~~~-~~~~~~~~-~~~~~v~~~~~s~~g~~l  359 (577)
T 2ymu_A          289 WNR-NGQLL-----QTLTGHSSSVWGVAFSPDGQTIASASDDKTVK-LWNRN-GQHLQTLT-GHSSSVWGVAFSPDGQTI  359 (577)
T ss_dssp             EET-TSCEE-----EEECCCSSCEEEEEECTTSSEEEEEETTSCEE-EEETT-SCEEEEEC-CCSSCEEEEEECTTSSEE
T ss_pred             EeC-CCcEE-----EEEecCCCCeEEEEECCCCCEEEEEeCCCeEE-EEeCC-CCeeEEEe-CCCCCEEEEEECCCCCEE
Confidence            874 45555     77899999999999998   799999999999 99975 55667777 999999999999999999


Q ss_pred             EeecCCC-----C-----CccccCCcceEEEeecCCCe--EEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEE
Q 006825          396 RRSSDER-----D-----TSSEKGGRRSSSATDDSQDV--SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIK  463 (630)
Q Consensus       396 asgS~D~-----d-----t~s~~gh~~~Vsa~~~s~d~--l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVa  463 (630)
                      ++++.|+     +     ...+.+|...|.+++|++++  +++++.|+.|++|+....      .++++.+|...|++++
T Consensus       360 ~~~~~dg~v~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~~~------~~~~~~~~~~~v~~~~  433 (577)
T 2ymu_A          360 ASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQ------LLQTLTGHSSSVWGVA  433 (577)
T ss_dssp             EEEETTSEEEEEETTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTCC------EEEEEECCSSCEEEEE
T ss_pred             EEEeCCCEEEEEcCCCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCC------EEEEecCCCCCeEEEE
Confidence            9999887     1     12367899999999999998  899999999999996433      4678999999999999


Q ss_pred             EccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeeccccccccccccc
Q 006825          464 FSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSL  543 (630)
Q Consensus       464 FSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~  543 (630)
                      |+||+++|++++.|++|++||+ +++.+..+     .+|...|.+++|+|++++|++++.|+.|                
T Consensus       434 ~s~d~~~l~~~~~d~~v~~w~~-~~~~~~~~-----~~~~~~v~~~~~spd~~~las~~~d~~i----------------  491 (577)
T 2ymu_A          434 FSPDDQTIASASDDKTVKLWNR-NGQLLQTL-----TGHSSSVRGVAFSPDGQTIASASDDKTV----------------  491 (577)
T ss_dssp             ECTTSSEEEEEETTSEEEEEET-TSCEEEEE-----ECCSSCEEEEEECTTSCEEEEEETTSEE----------------
T ss_pred             ECCCCCEEEEEcCCCEEEEEEC-CCCEEEEE-----cCCCCCEEEEEEcCCCCEEEEEeCCCEE----------------
Confidence            9999999999999999999997 45555553     7899999999999999999999999999                


Q ss_pred             CccccccEEEeCCCCceEEeccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCCCcEEEEEe-cCCceEEEE-cCCCcE
Q 006825          544 DHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYDISLV-DRLMLR  620 (630)
Q Consensus       544 d~~i~~~~Vwdlsgk~l~tL~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg~~l~t~~-H~~~V~sVa-s~~~~~  620 (630)
                             ++|+.++++++++.+|...|++|+|+|+ ++|++++.|++|+|||. +++++.++. |.+.|++|+ .|++.+
T Consensus       492 -------~iw~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~~~h~~~v~~~~fs~dg~~  563 (577)
T 2ymu_A          492 -------KLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQT  563 (577)
T ss_dssp             -------EEEETTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEECCSSCEEEEEECTTSSC
T ss_pred             -------EEEcCCCCEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeC-CCCEEEEEcCCCCCEEEEEEcCCCCE
Confidence                   8899999999999999999999999999 99999999999999996 689999998 999999999 899999


Q ss_pred             EEEecce
Q 006825          621 FAYGAFL  627 (630)
Q Consensus       621 lAsgs~~  627 (630)
                      |++++.+
T Consensus       564 l~s~~~D  570 (577)
T 2ymu_A          564 IASASSD  570 (577)
T ss_dssp             EEEEETT
T ss_pred             EEEEeCC
Confidence            9888764

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=3.5e-36  Score=314.32  Aligned_cols=264  Identities=15%  Similarity=0.151  Sum_probs=236.6

Q ss_pred             eecceeeecCccceeEEEeec---ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCC---
Q 006825          329 IEEFEMCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDER---  402 (630)
Q Consensus       329 ~eef~~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~---  402 (630)
                      +.+..++.||...|.+++|+|   .|++|+.|++++ +||+.+++.+..+. .|...|.+++|+|+|+++++++.|+   
T Consensus        45 ~~~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~-iWd~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~s~~~d~~v~  122 (340)
T 1got_B           45 MRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLI-IWDSYTTNKVHAIP-LRSSWVMTCAYAPSGNYVACGGLDNICS  122 (340)
T ss_dssp             CCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEE-EEETTTCCEEEEEE-CSSSCEEEEEECTTSSEEEEEETTCEEE
T ss_pred             chhheeecCCCCceEEEEECCCCCEEEEEeCCCcEE-EEECCCCCcceEee-cCCccEEEEEECCCCCEEEEEeCCCeEE
Confidence            334478999999999999998   799999999999 99999999999998 8999999999999999999999887   


Q ss_pred             --C--C--------ccccCCcceEEEeecCCCe-EEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCC
Q 006825          403 --D--T--------SSEKGGRRSSSATDDSQDV-SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGR  469 (630)
Q Consensus       403 --d--t--------~s~~gh~~~Vsa~~~s~d~-l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~  469 (630)
                        +  +        ..+.+|...|.++.|.++. +++++.|++|++||+.+++     ++.++.+|.+.|++++|+|+++
T Consensus       123 iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~s~d~~i~~wd~~~~~-----~~~~~~~h~~~v~~~~~~~~~~  197 (340)
T 1got_B          123 IYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQ-----QTTTFTGHTGDVMSLSLAPDTR  197 (340)
T ss_dssp             EEETTTCSBSCEEEEEEECCSSCEEEEEEEETTEEEEEETTSCEEEEETTTTE-----EEEEECCCSSCEEEEEECTTSS
T ss_pred             EEECccCCCcceeEEEecCCCccEEEEEECCCCcEEEEECCCcEEEEECCCCc-----EEEEEcCCCCceEEEEECCCCC
Confidence              1  1        1257899999999988777 8999999999999998764     4678999999999999999999


Q ss_pred             EEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccc
Q 006825          470 YLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVP  549 (630)
Q Consensus       470 ~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~  549 (630)
                      +|++|+.|++|+|||+.++.....+     .+|...|.+++|+|++.+|++++.|++|                      
T Consensus       198 ~l~sg~~d~~v~~wd~~~~~~~~~~-----~~h~~~v~~v~~~p~~~~l~s~s~d~~v----------------------  250 (340)
T 1got_B          198 LFVSGACDASAKLWDVREGMCRQTF-----TGHESDINAICFFPNGNAFATGSDDATC----------------------  250 (340)
T ss_dssp             EEEEEETTSCEEEEETTTCSEEEEE-----CCCSSCEEEEEECTTSSEEEEEETTSCE----------------------
T ss_pred             EEEEEeCCCcEEEEECCCCeeEEEE-----cCCcCCEEEEEEcCCCCEEEEEcCCCcE----------------------
Confidence            9999999999999999999887774     7899999999999999999999999999                      


Q ss_pred             cEEEeC-CCCceEEec--cCCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCCCcEEEEEe-cCCceEEEE-cCCCcEEEE
Q 006825          550 ETVFAL-SDKPICSFQ--GHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYDISLV-DRLMLRFAY  623 (630)
Q Consensus       550 ~~Vwdl-sgk~l~tL~--GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg~~l~t~~-H~~~V~sVa-s~~~~~lAs  623 (630)
                       ++|++ .++.+..+.  .+...|++++|+|+ .+|++|+.|++|+|||+.+++++.++. |...|++|+ ++++..+++
T Consensus       251 -~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s  329 (340)
T 1got_B          251 -RLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVAT  329 (340)
T ss_dssp             -EEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSCEEE
T ss_pred             -EEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEEEEcCCCCEEEE
Confidence             77777 455666654  33457999999999 999999999999999999999999998 999999999 899999999


Q ss_pred             ecce
Q 006825          624 GAFL  627 (630)
Q Consensus       624 gs~~  627 (630)
                      ++.+
T Consensus       330 ~s~D  333 (340)
T 1got_B          330 GSWD  333 (340)
T ss_dssp             EETT
T ss_pred             EcCC
Confidence            8765

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=6.5e-36  Score=311.38  Aligned_cols=260  Identities=21%  Similarity=0.242  Sum_probs=233.5

Q ss_pred             eeeecCccceeEEEeec-------ceEeecCCCccEecccCCCCce--eEEecCCccCCEEEEEEcCCCCeEEeecCCC-
Q 006825          333 EMCVGHSPIVQELMRRQ-------NVEEGNKDSFDLNNNGSSGGGM--KSKKKGSWFKSIRTVASSVTGHKERRSSDER-  402 (630)
Q Consensus       333 ~~l~GHs~~V~~Lafs~-------~laSgS~D~tvr~vWD~~tG~~--~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~-  402 (630)
                      ..+.+|...|++|+|+|       .|+|||.|++++ +|++.+++.  ...+. ||...|.+++|++++.++++++.|+ 
T Consensus        26 ~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~-vW~~~~~~~~~~~~l~-gh~~~v~~~~~~~~~~~l~s~s~D~~  103 (321)
T 3ow8_A           26 KQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVK-VWKWRDERLDLQWSLE-GHQLGVVSVDISHTLPIAASSSLDAH  103 (321)
T ss_dssp             EETTSSSSCEEEEEEC-------CEEEEEETTSCEE-EEEEETTEEEEEEEEC-CCSSCEEEEEECSSSSEEEEEETTSE
T ss_pred             eecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEE-EEECCCCCeeeeeeec-cCCCCEEEEEECCCCCEEEEEeCCCc
Confidence            66789999999999976       599999999999 999987764  44677 9999999999999999999999987 


Q ss_pred             ----C--C----ccccCCcceEEEeecCCCe--EEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCE
Q 006825          403 ----D--T----SSEKGGRRSSSATDDSQDV--SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRY  470 (630)
Q Consensus       403 ----d--t----~s~~gh~~~Vsa~~~s~d~--l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~  470 (630)
                          +  +    .....|...+.+++|++++  +++++.+++|++|++..++     ....+..|...|.+++|+|+|++
T Consensus       104 i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~-----~~~~~~~~~~~v~~~~~spdg~~  178 (321)
T 3ow8_A          104 IRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGK-----KEYSLDTRGKFILSIAYSPDGKY  178 (321)
T ss_dssp             EEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCS-----EEEEEECSSSCEEEEEECTTSSE
T ss_pred             EEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCc-----eeEEecCCCceEEEEEECCCCCE
Confidence                2  1    1255677778888999887  8999999999999998764     35678899999999999999999


Q ss_pred             EEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCcccccc
Q 006825          471 LASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPE  550 (630)
Q Consensus       471 LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~  550 (630)
                      ||+|+.|++|+|||+.+++.+..+     .+|...|.+++|+|++.+|++++.|+.|                       
T Consensus       179 lasg~~dg~i~iwd~~~~~~~~~~-----~~h~~~v~~l~~spd~~~l~s~s~dg~i-----------------------  230 (321)
T 3ow8_A          179 LASGAIDGIINIFDIATGKLLHTL-----EGHAMPIRSLTFSPDSQLLVTASDDGYI-----------------------  230 (321)
T ss_dssp             EEEEETTSCEEEEETTTTEEEEEE-----CCCSSCCCEEEECTTSCEEEEECTTSCE-----------------------
T ss_pred             EEEEcCCCeEEEEECCCCcEEEEE-----cccCCceeEEEEcCCCCEEEEEcCCCeE-----------------------
Confidence            999999999999999999887774     7899999999999999999999999999                       


Q ss_pred             EEEeC-CCCceEEeccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCCCcEEEEEe-cCCceEEEE-cCCCcEEEEecc
Q 006825          551 TVFAL-SDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYDISLV-DRLMLRFAYGAF  626 (630)
Q Consensus       551 ~Vwdl-sgk~l~tL~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg~~l~t~~-H~~~V~sVa-s~~~~~lAsgs~  626 (630)
                      ++|++ .++++.++.+|...|.+++|+|+ .+|++++.|++|+|||+.+++++.++. |...|++|+ ++++..+++++.
T Consensus       231 ~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~  310 (321)
T 3ow8_A          231 KIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGD  310 (321)
T ss_dssp             EEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred             EEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEEeC
Confidence            88888 67888999999999999999999 999999999999999999999999998 999999999 888888888875


Q ss_pred             e
Q 006825          627 L  627 (630)
Q Consensus       627 ~  627 (630)
                      +
T Consensus       311 d  311 (321)
T 3ow8_A          311 D  311 (321)
T ss_dssp             T
T ss_pred             C
Confidence            4

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=5.1e-36  Score=322.18  Aligned_cols=239  Identities=19%  Similarity=0.193  Sum_probs=214.4

Q ss_pred             EEEcCCCceEeeecceeeecCccceeEEEeec---ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCe
Q 006825          318 VKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHK  394 (630)
Q Consensus       318 l~dv~TG~~lt~eef~~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~  394 (630)
                      +|+..+|+.+     .++.||...|.+|+|+|   .|++|+.|++|+ +||+.+++++.++. +|...|.+++|+|+|.+
T Consensus       134 vwd~~~~~~~-----~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~-iwd~~~~~~~~~~~-~h~~~V~~v~~~p~~~~  206 (410)
T 1vyh_C          134 VWDYETGDFE-----RTLKGHTDSVQDISFDHSGKLLASCSADMTIK-LWDFQGFECIRTMH-GHDHNVSSVSIMPNGDH  206 (410)
T ss_dssp             EEETTTCCCC-----EEECCCSSCEEEEEECTTSSEEEEEETTSCCC-EEETTSSCEEECCC-CCSSCEEEEEECSSSSE
T ss_pred             EEECCCCcEE-----EEEeccCCcEEEEEEcCCCCEEEEEeCCCeEE-EEeCCCCceeEEEc-CCCCCEEEEEEeCCCCE
Confidence            3444444444     67789999999999998   799999999999 99999999999998 99999999999999999


Q ss_pred             EEeecCCC-----C--C----ccccCCcceEEEeecCCCe--EEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEE
Q 006825          395 ERRSSDER-----D--T----SSEKGGRRSSSATDDSQDV--SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWS  461 (630)
Q Consensus       395 lasgS~D~-----d--t----~s~~gh~~~Vsa~~~s~d~--l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~s  461 (630)
                      +++++.|+     +  +    ..+.+|...|.++.+++++  +++++.|++|++||..+++     +..++.+|...|.+
T Consensus       207 l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~-----~~~~~~~h~~~v~~  281 (410)
T 1vyh_C          207 IVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKE-----CKAELREHRHVVEC  281 (410)
T ss_dssp             EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC-----EEEEECCCSSCEEE
T ss_pred             EEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCc-----eeeEecCCCceEEE
Confidence            99999988     2  2    2367899999999999987  8999999999999997764     46789999999999


Q ss_pred             EEEccC--------------------CCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEe
Q 006825          462 IKFSLD--------------------GRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPK  521 (630)
Q Consensus       462 VaFSpD--------------------G~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasg  521 (630)
                      ++|+|+                    |.+|++|+.|++|+|||+.++.++..+     .+|...|.+++|+|++.+|+++
T Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~-----~~h~~~v~~v~~~~~g~~l~s~  356 (410)
T 1vyh_C          282 ISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTL-----VGHDNWVRGVLFHSGGKFILSC  356 (410)
T ss_dssp             EEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEE-----ECCSSCEEEEEECSSSSCEEEE
T ss_pred             EEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEE-----ECCCCcEEEEEEcCCCCEEEEE
Confidence            999996                    779999999999999999999888774     7899999999999999999999


Q ss_pred             eCCCeeeeecccccccccccccCccccccEEEeC-CCCceEEeccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeCC
Q 006825          522 HLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLS  596 (630)
Q Consensus       522 s~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~  596 (630)
                      +.|+.|                       ++|++ +++++.++.+|...|++++|+|+ .+|+||+.|++|+||+++
T Consensus       357 s~D~~i-----------------------~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~r  410 (410)
T 1vyh_C          357 ADDKTL-----------------------RVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR  410 (410)
T ss_dssp             ETTTEE-----------------------EEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC--
T ss_pred             eCCCeE-----------------------EEEECCCCceEEEEcCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Confidence            999999                       88888 67889999999999999999999 899999999999999864

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=9.3e-36  Score=314.74  Aligned_cols=232  Identities=13%  Similarity=0.052  Sum_probs=196.1

Q ss_pred             eecCccceeEEEeec--ceEeecCCCccEecccCCCCceeEEec---CCccCCEEEEEEcCCCCeEEeecCCCCCccccC
Q 006825          335 CVGHSPIVQELMRRQ--NVEEGNKDSFDLNNNGSSGGGMKSKKK---GSWFKSIRTVASSVTGHKERRSSDERDTSSEKG  409 (630)
Q Consensus       335 l~GHs~~V~~Lafs~--~laSgS~D~tvr~vWD~~tG~~~~~lk---~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~g  409 (630)
                      ...|...|.+|+|+|  .|++|+.|++|+ +||+.+++.+..++   .+|...|++|+|+|+|++|+             
T Consensus        78 ~~~~~~~v~~~~~s~d~~l~~~s~dg~v~-lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~-------------  143 (344)
T 4gqb_B           78 GVQTEAGVADLTWVGERGILVASDSGAVE-LWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAV-------------  143 (344)
T ss_dssp             EEEESSCEEEEEEETTTEEEEEETTSEEE-EEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEE-------------
T ss_pred             eeccCCCEEEEEEeCCCeEEEEECCCEEE-EEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEE-------------
Confidence            345677899999999  799999999999 99999998665433   28999999999999998875             


Q ss_pred             CcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCC-CEEEEEeCCCcEEEEECcCC
Q 006825          410 GRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDG-RYLASAGEDCVIHVWQVVES  488 (630)
Q Consensus       410 h~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG-~~LASgS~DgtIrVWDl~tg  488 (630)
                                      +|+.|++|++||+.+++     +++++.+|.+.|++++|+|++ .+|+||+.|++|+|||+.++
T Consensus       144 ----------------sgs~d~~i~iwd~~~~~-----~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~  202 (344)
T 4gqb_B          144 ----------------SGSKDICIKVWDLAQQV-----VLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCP  202 (344)
T ss_dssp             ----------------EEETTSCEEEEETTTTE-----EEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSS
T ss_pred             ----------------EEeCCCeEEEEECCCCc-----EEEEEcCcCCceEEEEecCCCCCceeeecccccccccccccc
Confidence                            45667789999998764     578899999999999999988 48999999999999999999


Q ss_pred             ceeeeeecccccCcccceEEEEECCC-CCEEEEeeCCCeeeeecccccccccccccCccccccEEEeC-CCCceEEeccC
Q 006825          489 ERKGELLEKQEDGHLNMLLLANGSPE-PTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGH  566 (630)
Q Consensus       489 ~~~~~l~~~~~~gh~~~V~svafSpd-g~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL~GH  566 (630)
                      +....+.   ...|...+.+++|+|+ +.++++++.|++|                       ++|++ +++++.+|.+|
T Consensus       203 ~~~~~~~---~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v-----------------------~~wd~~~~~~~~~~~~h  256 (344)
T 4gqb_B          203 KPASQIG---CSAPGYLPTSLAWHPQQSEVFVFGDENGTV-----------------------SLVDTKSTSCVLSSAVH  256 (344)
T ss_dssp             SCEEECC-------CCCEEEEEECSSCTTEEEEEETTSEE-----------------------EEEESCC--CCEEEECC
T ss_pred             ceeeeee---cceeeccceeeeecCCCCcceEEeccCCcE-----------------------EEEECCCCcEEEEEcCC
Confidence            8877752   2455667899999995 6788999999999                       88888 78999999999


Q ss_pred             CCCEEEEEEcCC--CeEEEEECCCcEEEEeCCCCcEEEEEecCCceEEEE-cCCCc-EEEEecce
Q 006825          567 LDDVLDLSWSKS--QHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYDISLV-DRLML-RFAYGAFL  627 (630)
Q Consensus       567 s~~V~sLafSPd--~~LaSgS~DgtVrIWDl~tg~~l~t~~H~~~V~sVa-s~~~~-~lAsgs~~  627 (630)
                      ...|++|+|+|+  .+|+||+.|++|+|||+.+++++....|.+.|++|+ +|++. .+++++.+
T Consensus       257 ~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~~~~H~~~V~~v~~sp~~~~llas~s~D  321 (344)
T 4gqb_B          257 SQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFRSQAHRDFVRDATWSPLNHSLLTTVGWD  321 (344)
T ss_dssp             SSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEEECCCSSCEEEEEECSSSTTEEEEEETT
T ss_pred             CCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEEEcCCCCCEEEEEEeCCCCeEEEEEcCC
Confidence            999999999998  579999999999999999998876555999999999 77764 56676644

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=5.7e-35  Score=308.00  Aligned_cols=261  Identities=13%  Similarity=0.120  Sum_probs=233.6

Q ss_pred             ceeeecCccceeEEEeec---ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCC-----
Q 006825          332 FEMCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERD-----  403 (630)
Q Consensus       332 f~~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~d-----  403 (630)
                      ..+|.||...|.+++|+|   .|+|||.|++++ +||..+++..+.+. .|...|.+++|+|+|+++++++.|+.     
T Consensus        57 ~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~-vWd~~~~~~~~~~~-~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~  134 (354)
T 2pbi_B           57 RRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVI-VWDSFTTNKEHAVT-MPCTWVMACAYAPSGCAIACGGLDNKCSVYP  134 (354)
T ss_dssp             EEEEECCSSCEEEEEECTTSSEEEEEETTSEEE-EEETTTCCEEEEEE-CSSSCCCEEEECTTSSEEEEESTTSEEEEEE
T ss_pred             EEEecCCCCeEEEEEECCCCCEEEEEeCCCeEE-EEECCCCCcceEEe-cCCCCEEEEEECCCCCEEEEeeCCCCEEEEE
Confidence            467899999999999998   799999999999 99999999999998 89999999999999999999998861     


Q ss_pred             ------------CccccCCcceEEEeecCCCe--EEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEcc--C
Q 006825          404 ------------TSSEKGGRRSSSATDDSQDV--SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSL--D  467 (630)
Q Consensus       404 ------------t~s~~gh~~~Vsa~~~s~d~--l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSp--D  467 (630)
                                  ...+.+|...|.++.|.++.  +++++.|++|++||+.+++     +++++.+|...|.+++|+|  +
T Consensus       135 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~-----~~~~~~~h~~~v~~~~~~~~~~  209 (354)
T 2pbi_B          135 LTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQ-----LLQSFHGHGADVLCLDLAPSET  209 (354)
T ss_dssp             CCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCC-----EEEEEECCSSCEEEEEECCCSS
T ss_pred             EeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCe-----EEEEEcCCCCCeEEEEEEeCCC
Confidence                        11245788999999999887  9999999999999998765     4788999999999999988  5


Q ss_pred             CCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccc
Q 006825          468 GRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMV  547 (630)
Q Consensus       468 G~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i  547 (630)
                      |++|++|+.|++|++||+.+++++..+     .+|...|.+++|+|++.+|++++.|++|                    
T Consensus       210 g~~l~sgs~Dg~v~~wd~~~~~~~~~~-----~~h~~~v~~v~~~p~~~~l~s~s~D~~v--------------------  264 (354)
T 2pbi_B          210 GNTFVSGGCDKKAMVWDMRSGQCVQAF-----ETHESDVNSVRYYPSGDAFASGSDDATC--------------------  264 (354)
T ss_dssp             CCEEEEEETTSCEEEEETTTCCEEEEE-----CCCSSCEEEEEECTTSSEEEEEETTSCE--------------------
T ss_pred             CCEEEEEeCCCeEEEEECCCCcEEEEe-----cCCCCCeEEEEEeCCCCEEEEEeCCCeE--------------------
Confidence            789999999999999999999887774     7899999999999999999999999999                    


Q ss_pred             cccEEEeC-CCCceEEeccC--CCCEEEEEEcCC-CeEEEEECCCcEEEEeCCCCcEEEEEe-cCCceEEEE-cCCCcEE
Q 006825          548 VPETVFAL-SDKPICSFQGH--LDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYDISLV-DRLMLRF  621 (630)
Q Consensus       548 ~~~~Vwdl-sgk~l~tL~GH--s~~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg~~l~t~~-H~~~V~sVa-s~~~~~l  621 (630)
                         ++|++ .++.+..+..+  ...+.+++|+|+ .+|++|+.|++|+|||+.+++++.++. |...|++++ +|++..|
T Consensus       265 ---~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l  341 (354)
T 2pbi_B          265 ---RLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAF  341 (354)
T ss_dssp             ---EEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCE
T ss_pred             ---EEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCCcEEEEEECCCCCEE
Confidence               77777 44555555543  457899999999 999999999999999999999999998 999999999 9999999


Q ss_pred             EEecce
Q 006825          622 AYGAFL  627 (630)
Q Consensus       622 Asgs~~  627 (630)
                      ++++.+
T Consensus       342 ~sgs~D  347 (354)
T 2pbi_B          342 CSGSWD  347 (354)
T ss_dssp             EEEETT
T ss_pred             EEEcCC
Confidence            998765

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=1.1e-35  Score=314.29  Aligned_cols=275  Identities=13%  Similarity=0.075  Sum_probs=216.8

Q ss_pred             CceeecCCCCcccCCCccccccCCCCCcccccccEEEEECCCCcEEEEeeecCCCceeEEEEcCCCceEeeecceeeecC
Q 006825          259 DSMSINGNGNYIGNSGEVVEDFDGNGTAGVAEQGCLIKNLDNGKEFVVNEIQEDGTWKKVKEVGTGRQLTIEEFEMCVGH  338 (630)
Q Consensus       259 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~LddG~~~~v~e~~~dg~~~~l~dv~TG~~lt~eef~~l~GH  338 (630)
                      ++|+|||||++|+..|+              +. .++|+   |             ..++|+..+|++. ........+|
T Consensus        46 ~~v~fSpDG~~las~s~--------------d~-~~~wd---~-------------~v~~~~~~~~~~~-~~~~~~~~~~   93 (357)
T 4g56_B           46 GAVRYRRDGALLLAASS--------------LS-SRTWG---G-------------SIWVFKDPEGAPN-ESLCTAGVQT   93 (357)
T ss_dssp             EEEEECSSSCEEEEEEC--------------SS-SSSCC---E-------------EEEEESSCC---C-GGGCSEEEEC
T ss_pred             EEEEECCCCCEEEEEcC--------------CC-Ccccc---C-------------eEEEEECCCCCcc-eeEecccCCC
Confidence            56899999999955442              11 12332   1             1235555555543 1112456789


Q ss_pred             ccceeEEEeec--ceEeecCCCccEecccCCCCceeE----EecCCccCCEEEEEEcCCCCeEEeecCCCCCccccCCcc
Q 006825          339 SPIVQELMRRQ--NVEEGNKDSFDLNNNGSSGGGMKS----KKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRR  412 (630)
Q Consensus       339 s~~V~~Lafs~--~laSgS~D~tvr~vWD~~tG~~~~----~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~  412 (630)
                      ...|.+|+|+|  .+++++.|++|+ +||+.+++.+.    .+. +|...|++|+|+|+|++|+                
T Consensus        94 ~~~V~~~~~s~d~~~l~~s~dg~v~-lWd~~~~~~~~~~~~~~~-~h~~~V~~v~~spdg~~l~----------------  155 (357)
T 4g56_B           94 EAGVTDVAWVSEKGILVASDSGAVE-LWEILEKESLLVNKFAKY-EHDDIVKTLSVFSDGTQAV----------------  155 (357)
T ss_dssp             SSCEEEEEEETTTEEEEEETTSCEE-EC--------CCCCEEEC-CCSSCEEEEEECSSSSEEE----------------
T ss_pred             CCCEEEEEEcCCCCEEEEECCCEEE-EeeccccceeEEEeeccC-CCCCCEEEEEECCCCCEEE----------------
Confidence            99999999999  688899999999 99999987543    333 8999999999999998775                


Q ss_pred             eEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCC-EEEEEeCCCcEEEEECcCCcee
Q 006825          413 SSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGR-YLASAGEDCVIHVWQVVESERK  491 (630)
Q Consensus       413 ~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~-~LASgS~DgtIrVWDl~tg~~~  491 (630)
                                   +|+.|++|++||..+++     ++..+.+|...|++|+|++++. +|++++.|++|+|||+.+++..
T Consensus       156 -------------sgs~dg~v~iwd~~~~~-----~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~  217 (357)
T 4g56_B          156 -------------SGGKDFSVKVWDLSQKA-----VLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPA  217 (357)
T ss_dssp             -------------EEETTSCEEEEETTTTE-----EEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCB
T ss_pred             -------------EEeCCCeEEEEECCCCc-----EEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCcee
Confidence                         45667789999998764     5678999999999999999875 8999999999999999998876


Q ss_pred             eeeecccccCcccceEEEEECCC-CCEEEEeeCCCeeeeecccccccccccccCccccccEEEeC-CCCceEEeccCCCC
Q 006825          492 GELLEKQEDGHLNMLLLANGSPE-PTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDD  569 (630)
Q Consensus       492 ~~l~~~~~~gh~~~V~svafSpd-g~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL~GHs~~  569 (630)
                      ..+.   ...|...+.+++|+|+ +.++++++.|+.|                       ++|++ +++++.++.+|...
T Consensus       218 ~~~~---~~~~~~~v~~v~~sp~~~~~la~g~~d~~i-----------------------~~wd~~~~~~~~~~~~~~~~  271 (357)
T 4g56_B          218 TRID---FCASDTIPTSVTWHPEKDDTFACGDETGNV-----------------------SLVNIKNPDSAQTSAVHSQN  271 (357)
T ss_dssp             CBCC---CTTCCSCEEEEEECTTSTTEEEEEESSSCE-----------------------EEEESSCGGGCEEECCCSSC
T ss_pred             eeee---eccccccccchhhhhcccceEEEeecccce-----------------------eEEECCCCcEeEEEecccee
Confidence            6532   3567778999999998 5788999999999                       88888 77899999999999


Q ss_pred             EEEEEEcCC--CeEEEEECCCcEEEEeCCCCcEEEEEecCCceEEEE-cC-CCcEEEEecce
Q 006825          570 VLDLSWSKS--QHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYDISLV-DR-LMLRFAYGAFL  627 (630)
Q Consensus       570 V~sLafSPd--~~LaSgS~DgtVrIWDl~tg~~l~t~~H~~~V~sVa-s~-~~~~lAsgs~~  627 (630)
                      |++|+|+|+  .+|++|+.|++|+|||+.++++++.+.|.+.|++|+ +| ++..|++++.+
T Consensus       272 v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~~H~~~V~~vafsP~d~~~l~s~s~D  333 (357)
T 4g56_B          272 ITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDLSHRDFVTGVAWSPLDHSKFTTVGWD  333 (357)
T ss_dssp             EEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEECCCSSCEEEEEECSSSTTEEEEEETT
T ss_pred             EEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEECCCCCCEEEEEEeCCCCCEEEEEcCC
Confidence            999999998  589999999999999999999998888999999999 76 68888888754

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=2e-35  Score=313.66  Aligned_cols=265  Identities=12%  Similarity=0.107  Sum_probs=229.5

Q ss_pred             eeeecCccceeEEEeec---ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCC------
Q 006825          333 EMCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERD------  403 (630)
Q Consensus       333 ~~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~d------  403 (630)
                      .+|.||...|.+|+|+|   .|+|||.|++++ +||+.+++....++ +|...|.+++|+|+|+++++++.|+.      
T Consensus        60 ~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~-iWd~~~~~~~~~~~-~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~  137 (380)
T 3iz6_a           60 RTLQGHSGKVYSLDWTPEKNWIVSASQDGRLI-VWNALTSQKTHAIK-LHCPWVMECAFAPNGQSVACGGLDSACSIFNL  137 (380)
T ss_dssp             EEECCCSSCEEEEEECTTSSCEEEEETTSEEE-EEETTTTEEEEEEE-CCCTTCCCCEECTTSSEEEECCSSSCCEEEEC
T ss_pred             ecccccccEEEEEEEcCCCCEEEEEeCCCeEE-EEECCCCccceEEe-cCCCCEEEEEECCCCCEEEEeeCCCcEEEEEC
Confidence            78999999999999999   799999999999 99999999999999 99999999999999999999998871      


Q ss_pred             ------------CccccCCcceEEEeecCCCe---EEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEcc-C
Q 006825          404 ------------TSSEKGGRRSSSATDDSQDV---SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSL-D  467 (630)
Q Consensus       404 ------------t~s~~gh~~~Vsa~~~s~d~---l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSp-D  467 (630)
                                  ...+.+|...|.++.+.++.   +++|+.|++|++||+.+++....+......+|...|.+++|++ +
T Consensus       138 ~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~  217 (380)
T 3iz6_a          138 SSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLN  217 (380)
T ss_dssp             CCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSS
T ss_pred             CCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCC
Confidence                        11267899999998888753   9999999999999998775321111111278999999999987 8


Q ss_pred             CCEEEEEeCCCcEEEEECcC-CceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCcc
Q 006825          468 GRYLASAGEDCVIHVWQVVE-SERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHM  546 (630)
Q Consensus       468 G~~LASgS~DgtIrVWDl~t-g~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~  546 (630)
                      +++|+||+.|++|+|||+.. +..+..     +.+|...|.+++|+|++.+|++++.|++|                   
T Consensus       218 ~~~l~sgs~D~~v~~wd~~~~~~~~~~-----~~~h~~~v~~v~~~p~~~~l~s~s~D~~i-------------------  273 (380)
T 3iz6_a          218 ANMFISGSCDTTVRLWDLRITSRAVRT-----YHGHEGDINSVKFFPDGQRFGTGSDDGTC-------------------  273 (380)
T ss_dssp             CCEEEEEETTSCEEEEETTTTCCCCEE-----ECCCSSCCCEEEECTTSSEEEEECSSSCE-------------------
T ss_pred             CCEEEEEECCCeEEEEECCCCCcceEE-----ECCcCCCeEEEEEecCCCeEEEEcCCCeE-------------------
Confidence            99999999999999999974 345555     47899999999999999999999999999                   


Q ss_pred             ccccEEEeC-CCCceEEeccCC-------CCEEEEEEcCC-CeEEEEECCCcEEEEeCCCCcEEEEE----e-cCCceEE
Q 006825          547 VVPETVFAL-SDKPICSFQGHL-------DDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIF----S-HSDYDIS  612 (630)
Q Consensus       547 i~~~~Vwdl-sgk~l~tL~GHs-------~~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg~~l~t~----~-H~~~V~s  612 (630)
                          ++|++ +++++..+..|.       ..|++++|+|+ .+|++|+.|++|+|||+.+++++..+    . |.+.|++
T Consensus       274 ----~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~  349 (380)
T 3iz6_a          274 ----RLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISC  349 (380)
T ss_dssp             ----EEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCE
T ss_pred             ----EEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEE
Confidence                77777 666777765543       34899999999 99999999999999999999998887    3 9999999


Q ss_pred             EE-cCCCcEEEEecce
Q 006825          613 LV-DRLMLRFAYGAFL  627 (630)
Q Consensus       613 Va-s~~~~~lAsgs~~  627 (630)
                      ++ +|++..|++++.+
T Consensus       350 l~~s~dg~~l~sgs~D  365 (380)
T 3iz6_a          350 LGLSSDGSALCTGSWD  365 (380)
T ss_dssp             EEECSSSSEEEEECTT
T ss_pred             EEECCCCCEEEEeeCC
Confidence            99 9999999999865

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=4e-34  Score=315.66  Aligned_cols=306  Identities=21%  Similarity=0.274  Sum_probs=259.6

Q ss_pred             ceeecCCCCcccCCCccccccCCCCCcccccccEEEEEC---------------------CCCcEEEEeeecCCCceeEE
Q 006825          260 SMSINGNGNYIGNSGEVVEDFDGNGTAGVAEQGCLIKNL---------------------DNGKEFVVNEIQEDGTWKKV  318 (630)
Q Consensus       260 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~L---------------------ddG~~~~v~e~~~dg~~~~l  318 (630)
                      .+.++|+|++|+..              ..++.++||++                     .+|+.+++..  .||. .++
T Consensus       185 ~~~~~~~~~~l~~~--------------~~d~~v~~w~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~--~d~~-i~~  247 (577)
T 2ymu_A          185 GVAFSPDGQTIASA--------------SDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASAS--DDKT-VKL  247 (577)
T ss_dssp             EEEECTTSSCEEEE--------------ETTSEEEEECTTSCEEEEEECCSSCEEEEEECTTSSCEEEEE--TTSC-EEE
T ss_pred             eeeecCCCCEEEEE--------------cCCCEEEEEeCCCcEEEEEecCCCCEEEEEECCCCCEEEEEe--CCCE-EEE
Confidence            47899999999433              34445555553                     2333333322  2333 567


Q ss_pred             EEcCCCceEeeecceeeecCccceeEEEeec---ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeE
Q 006825          319 KEVGTGRQLTIEEFEMCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKE  395 (630)
Q Consensus       319 ~dv~TG~~lt~eef~~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~l  395 (630)
                      |+. +++.+     ..+.+|...|..++|+|   .+++++.|++++ +|+. +++.+..+. +|...|.+++|+|+|+++
T Consensus       248 w~~-~~~~~-----~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~-~w~~-~~~~~~~~~-~h~~~v~~~~~~~~~~~l  318 (577)
T 2ymu_A          248 WNR-NGQLL-----QTLTGHSSSVNGVAFRPDGQTIASASDDKTVK-LWNR-NGQLLQTLT-GHSSSVWGVAFSPDGQTI  318 (577)
T ss_dssp             ECT-TSCEE-----EEECCCSSCEEEEEECTTSSEEEEEETTSCEE-EEET-TSCEEEEEC-CCSSCEEEEEECTTSSEE
T ss_pred             EeC-CCCEE-----EEEecCCCCEEEEEEcCCCCEEEEEeCCCEEE-EEeC-CCcEEEEEe-cCCCCeEEEEECCCCCEE
Confidence            874 45655     78899999999999998   799999999999 9996 677888888 999999999999999999


Q ss_pred             EeecCCCC----------CccccCCcceEEEeecCCCe--EEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEE
Q 006825          396 RRSSDERD----------TSSEKGGRRSSSATDDSQDV--SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIK  463 (630)
Q Consensus       396 asgS~D~d----------t~s~~gh~~~Vsa~~~s~d~--l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVa  463 (630)
                      ++++.|+.          .....+|...|.++++++++  +++++.|+.|++|+....      ++.++.+|...|.+|+
T Consensus       319 ~t~~~d~~i~~w~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~~~------~~~~~~~~~~~v~~~~  392 (577)
T 2ymu_A          319 ASASDDKTVKLWNRNGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQ------LLQTLTGHSSSVRGVA  392 (577)
T ss_dssp             EEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTCC------EEEEEECCSSCEEEEE
T ss_pred             EEEeCCCeEEEEeCCCCeeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCCCC------EEEEecCCCCCeEEEE
Confidence            99998872          12367899999999999987  899999999999996533      4678899999999999


Q ss_pred             EccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeeccccccccccccc
Q 006825          464 FSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSL  543 (630)
Q Consensus       464 FSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~  543 (630)
                      |+|||++|++++.|++|+|||. +++.+..+     .+|...|.+++|+|+++++++++.|+.|                
T Consensus       393 ~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~-----~~~~~~v~~~~~s~d~~~l~~~~~d~~v----------------  450 (577)
T 2ymu_A          393 FSPDGQTIASASDDKTVKLWNR-NGQLLQTL-----TGHSSSVWGVAFSPDDQTIASASDDKTV----------------  450 (577)
T ss_dssp             ECTTSSCEEEEETTSEEEEECT-TCCEEEEE-----ECCSSCEEEEEECTTSSEEEEEETTSEE----------------
T ss_pred             ECCCCCEEEEEeCCCEEEEEeC-CCCEEEEe-----cCCCCCeEEEEECCCCCEEEEEcCCCEE----------------
Confidence            9999999999999999999996 45555553     7899999999999999999999999999                


Q ss_pred             CccccccEEEeCCCCceEEeccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCCCcEEEEEe-cCCceEEEE-cCCCcE
Q 006825          544 DHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYDISLV-DRLMLR  620 (630)
Q Consensus       544 d~~i~~~~Vwdlsgk~l~tL~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg~~l~t~~-H~~~V~sVa-s~~~~~  620 (630)
                             ++|+.+++.+.++.+|...|++++|+|+ .+|++++.|++|+|||. ++++++++. |...|++|+ +|++.+
T Consensus       451 -------~~w~~~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~~~h~~~v~~l~~s~dg~~  522 (577)
T 2ymu_A          451 -------KLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQT  522 (577)
T ss_dssp             -------EEEETTSCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSSC
T ss_pred             -------EEEECCCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEEEeCCCCCEEEEEEcCCCCE
Confidence                   8899989999999999999999999999 99999999999999995 788999998 999999999 899999


Q ss_pred             EEEecce
Q 006825          621 FAYGAFL  627 (630)
Q Consensus       621 lAsgs~~  627 (630)
                      |++++.+
T Consensus       523 l~s~~~d  529 (577)
T 2ymu_A          523 IASASDD  529 (577)
T ss_dssp             EEEEETT
T ss_pred             EEEEECc
Confidence            9888654

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=8.9e-35  Score=302.81  Aligned_cols=229  Identities=17%  Similarity=0.168  Sum_probs=210.2

Q ss_pred             eeeecCccceeEEEeec---ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCC-------
Q 006825          333 EMCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDER-------  402 (630)
Q Consensus       333 ~~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~-------  402 (630)
                      ..+.||...|.+++|++   .+++++.|++++ +||+.+++++..+. +|...|.+++|+|+|+++++++.++       
T Consensus        74 ~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~-lWd~~~~~~~~~~~-~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~  151 (321)
T 3ow8_A           74 WSLEGHQLGVVSVDISHTLPIAASSSLDAHIR-LWDLENGKQIKSID-AGPVDAWTLAFSPDSQYLATGTHVGKVNIFGV  151 (321)
T ss_dssp             EEECCCSSCEEEEEECSSSSEEEEEETTSEEE-EEETTTTEEEEEEE-CCTTCCCCEEECTTSSEEEEECTTSEEEEEET
T ss_pred             eeeccCCCCEEEEEECCCCCEEEEEeCCCcEE-EEECCCCCEEEEEe-CCCccEEEEEECCCCCEEEEEcCCCcEEEEEc
Confidence            45789999999999998   799999999999 99999999999998 8999999999999999999999886       


Q ss_pred             CC----ccccCCcceEEEeecCCCe--EEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeC
Q 006825          403 DT----SSEKGGRRSSSATDDSQDV--SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGE  476 (630)
Q Consensus       403 dt----~s~~gh~~~Vsa~~~s~d~--l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~  476 (630)
                      ++    ..+..|...|.++++++++  +++|+.|+.|++||+.+++     +++++.+|...|++++|+|++++|++|+.
T Consensus       152 ~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~-----~~~~~~~h~~~v~~l~~spd~~~l~s~s~  226 (321)
T 3ow8_A          152 ESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGK-----LLHTLEGHAMPIRSLTFSPDSQLLVTASD  226 (321)
T ss_dssp             TTCSEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE-----EEEEECCCSSCCCEEEECTTSCEEEEECT
T ss_pred             CCCceeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCc-----EEEEEcccCCceeEEEEcCCCCEEEEEcC
Confidence            11    1256778889999999988  8999999999999998764     46789999999999999999999999999


Q ss_pred             CCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeC-
Q 006825          477 DCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-  555 (630)
Q Consensus       477 DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-  555 (630)
                      |++|+|||+.++.....+     .+|...|.+++|+|++.+|++++.|++|                       ++|++ 
T Consensus       227 dg~i~iwd~~~~~~~~~~-----~~h~~~v~~~~~sp~~~~l~s~s~D~~v-----------------------~iwd~~  278 (321)
T 3ow8_A          227 DGYIKIYDVQHANLAGTL-----SGHASWVLNVAFCPDDTHFVSSSSDKSV-----------------------KVWDVG  278 (321)
T ss_dssp             TSCEEEEETTTCCEEEEE-----CCCSSCEEEEEECTTSSEEEEEETTSCE-----------------------EEEETT
T ss_pred             CCeEEEEECCCcceeEEE-----cCCCCceEEEEECCCCCEEEEEeCCCcE-----------------------EEEeCC
Confidence            999999999998877774     7899999999999999999999999999                       88888 


Q ss_pred             CCCceEEeccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeCC
Q 006825          556 SDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLS  596 (630)
Q Consensus       556 sgk~l~tL~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~  596 (630)
                      +++++.++.+|...|++++|+|+ .+|++++.|++|+|||+.
T Consensus       279 ~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p  320 (321)
T 3ow8_A          279 TRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDCP  320 (321)
T ss_dssp             TTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred             CCEEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence            78899999999999999999999 999999999999999974

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=1.2e-34  Score=303.71  Aligned_cols=289  Identities=15%  Similarity=0.182  Sum_probs=218.1

Q ss_pred             ceeecCCCCcccCCCccccccCCCCCcccccccEEEEECCCCcEEEEeeecCCCceeEEEEcCCCceEeeecceeeecCc
Q 006825          260 SMSINGNGNYIGNSGEVVEDFDGNGTAGVAEQGCLIKNLDNGKEFVVNEIQEDGTWKKVKEVGTGRQLTIEEFEMCVGHS  339 (630)
Q Consensus       260 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~LddG~~~~v~e~~~dg~~~~l~dv~TG~~lt~eef~~l~GHs  339 (630)
                      .+++||||++|              +++..++.++||+++.++....                         .....||.
T Consensus        21 ~l~~sp~g~~l--------------as~~~D~~i~iw~~~~~~~~~~-------------------------~~~~~~h~   61 (345)
T 3fm0_A           21 FLAWNPAGTLL--------------ASCGGDRRIRIWGTEGDSWICK-------------------------SVLSEGHQ   61 (345)
T ss_dssp             EEEECTTSSCE--------------EEEETTSCEEEEEEETTEEEEE-------------------------EEECSSCS
T ss_pred             EEEECCCCCEE--------------EEEcCCCeEEEEEcCCCcceee-------------------------eeeccccC
Confidence            37899999999              5566677888888755432110                         01236899


Q ss_pred             cceeEEEeec---ceEeecCCCccEecccCCCCc--eeEEecCCccCCEEEEEEcCCCCeEEeecCCC-----C--C---
Q 006825          340 PIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGG--MKSKKKGSWFKSIRTVASSVTGHKERRSSDER-----D--T---  404 (630)
Q Consensus       340 ~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~--~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~-----d--t---  404 (630)
                      ..|.+|+|+|   +|++|+.|++++ +||..++.  ++.++. +|...|.+|+|+|+|++|++++.|+     +  .   
T Consensus        62 ~~v~~~~~sp~g~~l~s~s~D~~v~-iw~~~~~~~~~~~~~~-~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~  139 (345)
T 3fm0_A           62 RTVRKVAWSPCGNYLASASFDATTC-IWKKNQDDFECVTTLE-GHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDE  139 (345)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSCEE-EEEECCC-EEEEEEEC-CCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSC
T ss_pred             CcEEEEEECCCCCEEEEEECCCcEE-EEEccCCCeEEEEEcc-CCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCC
Confidence            9999999999   799999999999 99998774  567887 9999999999999999999999987     1  1   


Q ss_pred             ----ccccCCcceEEEeecCCCe--EEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCC
Q 006825          405 ----SSEKGGRRSSSATDDSQDV--SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDC  478 (630)
Q Consensus       405 ----~s~~gh~~~Vsa~~~s~d~--l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~Dg  478 (630)
                          ..+.+|...|.++.+++++  +++++.|++|++|+....+.   .+..++.+|...|++|+|+|+|++||+|+.|+
T Consensus       140 ~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~---~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~  216 (345)
T 3fm0_A          140 YECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDW---VCCATLEGHESTVWSLAFDPSGQRLASCSDDR  216 (345)
T ss_dssp             EEEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEE---EEEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             eEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCE---EEEEEecCCCCceEEEEECCCCCEEEEEeCCC
Confidence                1267899999999999987  99999999999999865532   35678999999999999999999999999999


Q ss_pred             cEEEEECcCCceee-----------eeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccc
Q 006825          479 VIHVWQVVESERKG-----------ELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMV  547 (630)
Q Consensus       479 tIrVWDl~tg~~~~-----------~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i  547 (630)
                      +|+||++.......           ..+......|...|..++|+|++.++++++.|+.|++|+.........       
T Consensus       217 ~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~-------  289 (345)
T 3fm0_A          217 TVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQ-------  289 (345)
T ss_dssp             CEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTS-------
T ss_pred             eEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcce-------
Confidence            99999974322110           000001133888999999999999999999999995554322100000       


Q ss_pred             cccEEEeCCCCceEEeccCCCCEEEEEEcCC--CeEEEEECCCcEEEEeCCCCcEEEEEe
Q 006825          548 VPETVFALSDKPICSFQGHLDDVLDLSWSKS--QHLLSSSMDKTVRLWHLSSKTCLKIFS  605 (630)
Q Consensus       548 ~~~~Vwdlsgk~l~tL~GHs~~V~sLafSPd--~~LaSgS~DgtVrIWDl~tg~~l~t~~  605 (630)
                         ..+   ......+.+|...|++|+|+|+  .+||||+.||+|+||++.+++.+..+.
T Consensus       290 ---~~~---~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~~~~~~~  343 (345)
T 3fm0_A          290 ---PTF---SLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPEGLHHHH  343 (345)
T ss_dssp             ---CCE---EEEEEETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC--------
T ss_pred             ---eeE---EEEeeecccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecCCCCccccc
Confidence               000   0012334689999999999998  599999999999999999988766543

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.7e-34  Score=298.21  Aligned_cols=276  Identities=12%  Similarity=0.011  Sum_probs=216.8

Q ss_pred             cceeeecCccceeEEEeec-ceEeecCCCccEecccCCCC--ceeEEe-cCCccCCEEEEEEcCCCCeEEeecCCC----
Q 006825          331 EFEMCVGHSPIVQELMRRQ-NVEEGNKDSFDLNNNGSSGG--GMKSKK-KGSWFKSIRTVASSVTGHKERRSSDER----  402 (630)
Q Consensus       331 ef~~l~GHs~~V~~Lafs~-~laSgS~D~tvr~vWD~~tG--~~~~~l-k~gH~~~V~sVAfSpdG~~lasgS~D~----  402 (630)
                      .+.++.||...|++++|+| .||+|+.|++++ +||+.++  ..+..+ ..+|...|++|+|+|+|++|++++.|+    
T Consensus         6 ~~~~~~~h~~~v~~~~~s~~~las~~~D~~i~-lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~i   84 (330)
T 2hes_X            6 LIKSLKLYKEKIWSFDFSQGILATGSTDRKIK-LVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSI   84 (330)
T ss_dssp             EEEEEECCSSCEEEEEEETTEEEEEESSSCEE-EEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred             cceeeccCCCceeeeccCCCEEEEEcCCCEEE-EEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEE
Confidence            3478999999999999999 899999999999 9999886  455566 424999999999999999999999887    


Q ss_pred             -CC-------------ccccCCcceEEEeecCCCe--EEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEcc
Q 006825          403 -DT-------------SSEKGGRRSSSATDDSQDV--SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSL  466 (630)
Q Consensus       403 -dt-------------~s~~gh~~~Vsa~~~s~d~--l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSp  466 (630)
                       +.             ..+.+|...|.+++|++++  +++++.|++|++||+.... ....++..+.+|...|.+|+|+|
T Consensus        85 w~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~-~~~~~~~~~~~h~~~v~~v~~~p  163 (330)
T 2hes_X           85 WAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESG-EEYECISVLQEHSQDVKHVIWHP  163 (330)
T ss_dssp             EEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTC-CCCEEEEEECCCSSCEEEEEECS
T ss_pred             EEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCC-CCeEEEEEeccCCCceEEEEECC
Confidence             11             1257899999999999987  9999999999999984321 11235678999999999999999


Q ss_pred             CCCEEEEEeCCCcEEEEECcCC--ceeeeeecccccCcccceEEEEECCC--CCEEEEeeCCCeeeeecccccccccccc
Q 006825          467 DGRYLASAGEDCVIHVWQVVES--ERKGELLEKQEDGHLNMLLLANGSPE--PTSLSPKHLDNHLEKKRRGRSINRKSLS  542 (630)
Q Consensus       467 DG~~LASgS~DgtIrVWDl~tg--~~~~~l~~~~~~gh~~~V~svafSpd--g~~lasgs~Dg~I~i~~~~~~~~~~s~s  542 (630)
                      ++++|+||+.|++|+|||+.++  +++..     +.+|...|.+++|+|+  +.++++++.|++|++|+.......    
T Consensus       164 ~~~~l~s~s~D~~i~iW~~~~~~~~~~~~-----~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~----  234 (330)
T 2hes_X          164 SEALLASSSYDDTVRIWKDYDDDWECVAV-----LNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDED----  234 (330)
T ss_dssp             SSSEEEEEETTSCEEEEEEETTEEEEEEE-----ECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTT----
T ss_pred             CCCEEEEEcCCCeEEEEECCCCCeeEEEE-----ccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCcc----
Confidence            9999999999999999998766  34444     4899999999999999  778999999999965554321000    


Q ss_pred             cCccccccEEEeCCCCceEEecc-CCCCEEEEEEcCCCeEEEEECCCcEEEEeCCCCc--EEEEE-e-cCC-ceEEEE-c
Q 006825          543 LDHMVVPETVFALSDKPICSFQG-HLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKT--CLKIF-S-HSD-YDISLV-D  615 (630)
Q Consensus       543 ~d~~i~~~~Vwdlsgk~l~tL~G-Hs~~V~sLafSPd~~LaSgS~DgtVrIWDl~tg~--~l~t~-~-H~~-~V~sVa-s  615 (630)
                        .    ...|    .++..+.+ |...|++++|+++++|++++.|++|+|||+.+++  ++... . |.. .|++++ .
T Consensus       235 --~----~~~~----~~~~~~~~~h~~~v~~v~~s~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~  304 (330)
T 2hes_X          235 --D----QQEW----VCEAILPDVHKRQVYNVAWGFNGLIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWL  304 (330)
T ss_dssp             --S----CEEE----EEEEECCSCCSSCEEEEEECTTSCEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC
T ss_pred             --c----ccee----EEeeecccccccceEEEEEcCCCEEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEe
Confidence              0    0000    23445555 9999999999987999999999999999998874  34443 3 877 899999 6


Q ss_pred             C--CCcEEEEecce
Q 006825          616 R--LMLRFAYGAFL  627 (630)
Q Consensus       616 ~--~~~~lAsgs~~  627 (630)
                      +  .+..|++++.+
T Consensus       305 ~~~~~~~las~s~D  318 (330)
T 2hes_X          305 ELNGKTILATGGDD  318 (330)
T ss_dssp             -----CCEEEEETT
T ss_pred             cCCCceEEEEecCC
Confidence            6  57778887654

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=9.2e-34  Score=296.00  Aligned_cols=257  Identities=11%  Similarity=0.068  Sum_probs=217.7

Q ss_pred             ceeecCCCCcccCCCccccccCCCCCcccccccEEEEECCCCcEEEEee--------------------ecCCCceeEEE
Q 006825          260 SMSINGNGNYIGNSGEVVEDFDGNGTAGVAEQGCLIKNLDNGKEFVVNE--------------------IQEDGTWKKVK  319 (630)
Q Consensus       260 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~LddG~~~~v~e--------------------~~~dg~~~~l~  319 (630)
                      +|.++|||++|              +++..++.++||++.+++......                    .+.|| ..++|
T Consensus        60 ~~~~s~d~~~l--------------~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~-~v~iw  124 (340)
T 1got_B           60 AMHWGTDSRLL--------------LSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDN-ICSIY  124 (340)
T ss_dssp             EEEECTTSSEE--------------EEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTC-EEEEE
T ss_pred             EEEECCCCCEE--------------EEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCC-eEEEE
Confidence            47999999999              566677889999988776543221                    12233 36789


Q ss_pred             EcCCCceEeeecceeeecCccceeEEEeec--ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEe
Q 006825          320 EVGTGRQLTIEEFEMCVGHSPIVQELMRRQ--NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERR  397 (630)
Q Consensus       320 dv~TG~~lt~eef~~l~GHs~~V~~Lafs~--~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~las  397 (630)
                      ++.+++.. ......+.||...|..+.|.+  .+++++.|++++ +||+.+++.+.++. +|...|.+++|+|+|+++  
T Consensus       125 ~~~~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~l~s~s~d~~i~-~wd~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l--  199 (340)
T 1got_B          125 NLKTREGN-VRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCA-LWDIETGQQTTTFT-GHTGDVMSLSLAPDTRLF--  199 (340)
T ss_dssp             ETTTCSBS-CEEEEEEECCSSCEEEEEEEETTEEEEEETTSCEE-EEETTTTEEEEEEC-CCSSCEEEEEECTTSSEE--
T ss_pred             ECccCCCc-ceeEEEecCCCccEEEEEECCCCcEEEEECCCcEE-EEECCCCcEEEEEc-CCCCceEEEEECCCCCEE--
Confidence            98876421 122367889999999999988  799999999999 99999999999998 999999999999998776  


Q ss_pred             ecCCCCCccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCC
Q 006825          398 SSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGED  477 (630)
Q Consensus       398 gS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~D  477 (630)
                                                 ++|+.|++|++||+..+.     +++++.+|...|++|+|+|++++|++|+.|
T Consensus       200 ---------------------------~sg~~d~~v~~wd~~~~~-----~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d  247 (340)
T 1got_B          200 ---------------------------VSGACDASAKLWDVREGM-----CRQTFTGHESDINAICFFPNGNAFATGSDD  247 (340)
T ss_dssp             ---------------------------EEEETTSCEEEEETTTCS-----EEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred             ---------------------------EEEeCCCcEEEEECCCCe-----eEEEEcCCcCCEEEEEEcCCCCEEEEEcCC
Confidence                                       455677889999997664     567899999999999999999999999999


Q ss_pred             CcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeC-C
Q 006825          478 CVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-S  556 (630)
Q Consensus       478 gtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-s  556 (630)
                      ++|+|||+.+++.+..+.   ...+...|.+++|+|++.++++++.|+.|                       ++|++ +
T Consensus       248 ~~v~iwd~~~~~~~~~~~---~~~~~~~v~~~~~s~~g~~l~~g~~d~~i-----------------------~vwd~~~  301 (340)
T 1got_B          248 ATCRLFDLRADQELMTYS---HDNIICGITSVSFSKSGRLLLAGYDDFNC-----------------------NVWDALK  301 (340)
T ss_dssp             SCEEEEETTTTEEEEEEC---CTTCCSCEEEEEECTTSSEEEEEETTSEE-----------------------EEEETTT
T ss_pred             CcEEEEECCCCcEEEEEc---cCCcccceEEEEECCCCCEEEEECCCCeE-----------------------EEEEccc
Confidence            999999999887665531   23445679999999999999999999999                       88887 7


Q ss_pred             CCceEEeccCCCCEEEEEEcCC-CeEEEEECCCcEEEEe
Q 006825          557 DKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWH  594 (630)
Q Consensus       557 gk~l~tL~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWD  594 (630)
                      ++.+.++.+|...|++++|+|+ .+|+||+.|++|+|||
T Consensus       302 ~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd  340 (340)
T 1got_B          302 ADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             CCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             CcEeeEeecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence            7888999999999999999999 8999999999999997

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=1.6e-34  Score=305.28  Aligned_cols=221  Identities=17%  Similarity=0.099  Sum_probs=179.9

Q ss_pred             eEEEEcCCCceEeeecceeeecCccceeEEEeec---ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCC
Q 006825          316 KKVKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTG  392 (630)
Q Consensus       316 ~~l~dv~TG~~lt~eef~~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG  392 (630)
                      .++||+.+|+.+.... ..+.||...|.+|+|+|   .|++|+.|++|+ +||+.+++.+.++. +|...|.+++|+|++
T Consensus       105 v~lWd~~~~~~~~~~~-~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~-iwd~~~~~~~~~~~-~h~~~V~~~~~~~~~  181 (344)
T 4gqb_B          105 VELWELDENETLIVSK-FCKYEHDDIVSTVSVLSSGTQAVSGSKDICIK-VWDLAQQVVLSSYR-AHAAQVTCVAASPHK  181 (344)
T ss_dssp             EEEEEECTTSSCEEEE-EEEECCSSCEEEEEECTTSSEEEEEETTSCEE-EEETTTTEEEEEEC-CCSSCEEEEEECSSC
T ss_pred             EEEEeccCCCceeEee-ccccCCCCCEEEEEECCCCCEEEEEeCCCeEE-EEECCCCcEEEEEc-CcCCceEEEEecCCC
Confidence            3445555554431111 24569999999999999   799999999999 99999999999999 999999999999987


Q ss_pred             CeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEe--cccCcCEEEEEEcc-CCC
Q 006825          393 HKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEI--QAHNGSIWSIKFSL-DGR  469 (630)
Q Consensus       393 ~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL--~gHt~~V~sVaFSp-DG~  469 (630)
                      ..+                            +++++.|++|++||+.+++.     ...+  ..|...|.+++|+| +++
T Consensus       182 ~~~----------------------------l~s~s~D~~v~iwd~~~~~~-----~~~~~~~~~~~~~~~~~~~p~~~~  228 (344)
T 4gqb_B          182 DSV----------------------------FLSCSEDNRILLWDTRCPKP-----ASQIGCSAPGYLPTSLAWHPQQSE  228 (344)
T ss_dssp             TTE----------------------------EEEEETTSCEEEEETTSSSC-----EEECC----CCCEEEEEECSSCTT
T ss_pred             CCc----------------------------eeeeccccccccccccccce-----eeeeecceeeccceeeeecCCCCc
Confidence            532                            36777888999999987753     3333  45667899999999 567


Q ss_pred             EEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCC-CEEEEeeCCCeeeeecccccccccccccCcccc
Q 006825          470 YLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEP-TSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVV  548 (630)
Q Consensus       470 ~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg-~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~  548 (630)
                      +|++|+.|++|+|||+.+++++..+     .+|...|.+++|+|++ ++|++++.|++|                     
T Consensus       229 ~l~sg~~dg~v~~wd~~~~~~~~~~-----~~h~~~v~~v~fsp~g~~~lasgs~D~~i---------------------  282 (344)
T 4gqb_B          229 VFVFGDENGTVSLVDTKSTSCVLSS-----AVHSQCVTGLVFSPHSVPFLASLSEDCSL---------------------  282 (344)
T ss_dssp             EEEEEETTSEEEEEESCC--CCEEE-----ECCSSCEEEEEECSSSSCCEEEEETTSCE---------------------
T ss_pred             ceEEeccCCcEEEEECCCCcEEEEE-----cCCCCCEEEEEEccCCCeEEEEEeCCCeE---------------------
Confidence            9999999999999999999888874     7999999999999997 689999999999                     


Q ss_pred             ccEEEeCCCCceEEeccCCCCEEEEEEcCC--CeEEEEECCCcEEEEeCCCCcE
Q 006825          549 PETVFALSDKPICSFQGHLDDVLDLSWSKS--QHLLSSSMDKTVRLWHLSSKTC  600 (630)
Q Consensus       549 ~~~Vwdlsgk~l~tL~GHs~~V~sLafSPd--~~LaSgS~DgtVrIWDl~tg~~  600 (630)
                        ++|++....+..+.+|.+.|++|+|+|+  .+|+|+|.|++|++|++.+...
T Consensus       283 --~vwd~~~~~~~~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~~~  334 (344)
T 4gqb_B          283 --AVLDSSLSELFRSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTEPL  334 (344)
T ss_dssp             --EEECTTCCEEEEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC---
T ss_pred             --EEEECCCCcEEEEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCCCC
Confidence              8888855566778999999999999998  4678999999999999987543

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=6e-34  Score=298.41  Aligned_cols=284  Identities=15%  Similarity=0.104  Sum_probs=227.4

Q ss_pred             cceeeecCcc-ceeEEEeec---ceEeecCCCccEecccCCCCcee--EEecCCccCCEEEEEEcCCCCeEEeecCCCC-
Q 006825          331 EFEMCVGHSP-IVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMK--SKKKGSWFKSIRTVASSVTGHKERRSSDERD-  403 (630)
Q Consensus       331 ef~~l~GHs~-~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~--~~lk~gH~~~V~sVAfSpdG~~lasgS~D~d-  403 (630)
                      .+.++.||.. .|+.|+|+|   .||+|+.|++|+ +||+.++...  ..+..+|...|.+|+|+|+|++|++++.|+. 
T Consensus         7 ~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~-iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v   85 (345)
T 3fm0_A            7 LLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIR-IWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATT   85 (345)
T ss_dssp             EEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEE-EEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred             EeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEE-EEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcE
Confidence            3478899998 999999999   799999999999 9999988643  3343499999999999999999999998871 


Q ss_pred             ------C------ccccCCcceEEEeecCCCe--EEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCC
Q 006825          404 ------T------SSEKGGRRSSSATDDSQDV--SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGR  469 (630)
Q Consensus       404 ------t------~s~~gh~~~Vsa~~~s~d~--l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~  469 (630)
                            .      ..+.+|...|.+++|++++  +++++.|++|++||+...+  ...++..+.+|...|.+++|+|+++
T Consensus        86 ~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~--~~~~~~~~~~h~~~v~~~~~~p~~~  163 (345)
T 3fm0_A           86 CIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEED--EYECVSVLNSHTQDVKHVVWHPSQE  163 (345)
T ss_dssp             EEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTS--CEEEEEEECCCCSCEEEEEECSSSS
T ss_pred             EEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCC--CeEEEEEecCcCCCeEEEEECCCCC
Confidence                  1      2267899999999999987  9999999999999987653  2345678899999999999999999


Q ss_pred             EEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccc
Q 006825          470 YLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVP  549 (630)
Q Consensus       470 ~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~  549 (630)
                      +|++|+.|++|+|||+.++.....   ..+.+|...|.+++|+|++++|++++.|++|++|+.........+....    
T Consensus       164 ~l~s~s~d~~i~~w~~~~~~~~~~---~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~----  236 (345)
T 3fm0_A          164 LLASASYDDTVKLYREEEDDWVCC---ATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSG----  236 (345)
T ss_dssp             CEEEEETTSCEEEEEEETTEEEEE---EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC-----
T ss_pred             EEEEEeCCCcEEEEEecCCCEEEE---EEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeec----
Confidence            999999999999999987653321   1147999999999999999999999999999888753211110000000    


Q ss_pred             cEEEeCCCCceEEecc-CCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCCCc--------EE-EEEe-cCCceEEEE-cC
Q 006825          550 ETVFALSDKPICSFQG-HLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKT--------CL-KIFS-HSDYDISLV-DR  616 (630)
Q Consensus       550 ~~Vwdlsgk~l~tL~G-Hs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg~--------~l-~t~~-H~~~V~sVa-s~  616 (630)
                         .+...+++.++.+ |...|++++|+|+ .+|++++.|++|+||+...+.        .. ..+. |...|++|+ +|
T Consensus       237 ---~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p  313 (345)
T 3fm0_A          237 ---SDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNP  313 (345)
T ss_dssp             -----CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECS
T ss_pred             ---cCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeC
Confidence               0011245667776 8999999999999 999999999999999987642        11 2223 999999999 88


Q ss_pred             CC-cEEEEecce
Q 006825          617 LM-LRFAYGAFL  627 (630)
Q Consensus       617 ~~-~~lAsgs~~  627 (630)
                      .+ ..+++++.+
T Consensus       314 ~~~~~laS~s~D  325 (345)
T 3fm0_A          314 KEPGLLASCSDD  325 (345)
T ss_dssp             SSTTEEEEEETT
T ss_pred             CCceEEEEcCCC
Confidence            76 488888654

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=1.1e-33  Score=295.43  Aligned_cols=240  Identities=14%  Similarity=0.122  Sum_probs=190.7

Q ss_pred             eeeecCccceeEEEeec---ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCC-----CC
Q 006825          333 EMCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDER-----DT  404 (630)
Q Consensus       333 ~~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~-----dt  404 (630)
                      ..+.||...|.+|+|+|   .+++|+.|++++ +||+.+++.+.++. +|...|.+|+|+|+|+++++++.|+     +.
T Consensus        70 ~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~-lwd~~~~~~~~~~~-~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~  147 (343)
T 2xzm_R           70 KALTGHNHFVSDLALSQENCFAISSSWDKTLR-LWDLRTGTTYKRFV-GHQSEVYSVAFSPDNRQILSAGAEREIKLWNI  147 (343)
T ss_dssp             EEECCCSSCEEEEEECSSTTEEEEEETTSEEE-EEETTSSCEEEEEE-CCCSCEEEEEECSSTTEEEEEETTSCEEEEES
T ss_pred             chhccCCCceEEEEECCCCCEEEEEcCCCcEE-EEECCCCcEEEEEc-CCCCcEEEEEECCCCCEEEEEcCCCEEEEEec
Confidence            67899999999999998   799999999999 99999999999999 9999999999999999999999887     21


Q ss_pred             c--------cccCCcceEEEeecCCC------------eEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEE
Q 006825          405 S--------SEKGGRRSSSATDDSQD------------VSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKF  464 (630)
Q Consensus       405 ~--------s~~gh~~~Vsa~~~s~d------------~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaF  464 (630)
                      .        ...+|...|.++.++++            .+++++.|++|++||...      .....+.+|...|++++|
T Consensus       148 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~------~~~~~~~~h~~~v~~~~~  221 (343)
T 2xzm_R          148 LGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNF------QIRYTFKAHESNVNHLSI  221 (343)
T ss_dssp             SSCEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTT------EEEEEEECCSSCEEEEEE
T ss_pred             cCCceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCCC------ceeEEEcCccccceEEEE
Confidence            1        13378889999999876            389999999999999532      245678999999999999


Q ss_pred             ccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccC
Q 006825          465 SLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLD  544 (630)
Q Consensus       465 SpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d  544 (630)
                      +|+|++|++|+.|++|+|||+.........     ..+...|.+++|+|++.+++++ .|+.|++|+........     
T Consensus       222 s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~-----~~~~~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~-----  290 (343)
T 2xzm_R          222 SPNGKYIATGGKDKKLLIWDILNLTYPQRE-----FDAGSTINQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAP-----  290 (343)
T ss_dssp             CTTSSEEEEEETTCEEEEEESSCCSSCSEE-----EECSSCEEEEEECSSSCEEEEE-ESSCEEEEESSSCCSCS-----
T ss_pred             CCCCCEEEEEcCCCeEEEEECCCCccccee-----ecCCCcEEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCCc-----
Confidence            999999999999999999999543322221     1234569999999999887755 67778555543211100     


Q ss_pred             ccccccEEEeCCCC---ceEEeccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCCC
Q 006825          545 HMVVPETVFALSDK---PICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSK  598 (630)
Q Consensus       545 ~~i~~~~Vwdlsgk---~l~tL~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg  598 (630)
                             +..+...   ......+|...|++++|+|+ .+|++|+.||+|+||++.++
T Consensus       291 -------~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~g  341 (343)
T 2xzm_R          291 -------VCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFETS  341 (343)
T ss_dssp             -------EEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEETTSEEEEEEEEEE
T ss_pred             -------eEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEEecCCceEEEEEEEcc
Confidence                   0000000   01112379999999999999 99999999999999998765

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=6e-33  Score=283.82  Aligned_cols=259  Identities=20%  Similarity=0.248  Sum_probs=231.2

Q ss_pred             eeeecCccceeEEEeec---ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCC-----C-
Q 006825          333 EMCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDER-----D-  403 (630)
Q Consensus       333 ~~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~-----d-  403 (630)
                      .++.||...|.+++|+|   .|++|+.|++++ +|+..+++....+. +|...|.+++|+|+|+++++++.|+     + 
T Consensus        17 ~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~-iw~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~   94 (312)
T 4ery_A           17 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIK-IWGAYDGKFEKTIS-GHKLGISDVAWSSDSNLLVSASDDKTLKIWDV   94 (312)
T ss_dssp             EEECCCSSCEEEEEECTTSSEEEEEETTSCEE-EEETTTCCEEEEEC-CCSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred             EEEcccCCcEEEEEECCCCCEEEEeeCCCeEE-EEeCCCcccchhhc-cCCCceEEEEEcCCCCEEEEECCCCEEEEEEC
Confidence            56889999999999999   799999999999 99999999999998 9999999999999999999999987     1 


Q ss_pred             -C----ccccCCcceEEEeecCCCe--EEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeC
Q 006825          404 -T----SSEKGGRRSSSATDDSQDV--SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGE  476 (630)
Q Consensus       404 -t----~s~~gh~~~Vsa~~~s~d~--l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~  476 (630)
                       +    ..+.+|...|.++.+.+++  +++++.|++|++||..+++     ++..+.+|...|.+++|+|++++|++++.
T Consensus        95 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  169 (312)
T 4ery_A           95 SSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGK-----CLKTLPAHSDPVSAVHFNRDGSLIVSSSY  169 (312)
T ss_dssp             TTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCC-----EEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred             CCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCE-----EEEEecCCCCcEEEEEEcCCCCEEEEEeC
Confidence             1    2267899999999999887  8999999999999997764     46788999999999999999999999999


Q ss_pred             CCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeC-
Q 006825          477 DCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-  555 (630)
Q Consensus       477 DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-  555 (630)
                      |++|++||+.+++.+..+    ...+...+..++|+|++.++++++.|+.|                       ++|++ 
T Consensus       170 d~~i~~wd~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~l~~~~~d~~i-----------------------~iwd~~  222 (312)
T 4ery_A          170 DGLCRIWDTASGQCLKTL----IDDDNPPVSFVKFSPNGKYILAATLDNTL-----------------------KLWDYS  222 (312)
T ss_dssp             TSCEEEEETTTCCEEEEE----CCSSCCCEEEEEECTTSSEEEEEETTTEE-----------------------EEEETT
T ss_pred             CCcEEEEECCCCceeeEE----eccCCCceEEEEECCCCCEEEEEcCCCeE-----------------------EEEECC
Confidence            999999999998877765    35667789999999999999999999999                       88888 


Q ss_pred             CCCceEEeccCCCCEEE--EEEc-CC-CeEEEEECCCcEEEEeCCCCcEEEEEe-cCCceEEEE-cCCCcEEEEec
Q 006825          556 SDKPICSFQGHLDDVLD--LSWS-KS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYDISLV-DRLMLRFAYGA  625 (630)
Q Consensus       556 sgk~l~tL~GHs~~V~s--LafS-Pd-~~LaSgS~DgtVrIWDl~tg~~l~t~~-H~~~V~sVa-s~~~~~lAsgs  625 (630)
                      +++++..+.+|...+.+  ..|+ ++ .+|++|+.|++|+|||+.+++++..+. |.+.|.+++ +|.+..+++++
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~  298 (312)
T 4ery_A          223 KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAA  298 (312)
T ss_dssp             TTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCCSSCEEEEEECSSSSEEEEEE
T ss_pred             CCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhccCCcEEEEeecCcCCceEEEE
Confidence            67888899999876433  3444 45 899999999999999999999999998 999999999 89999988875

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=5.2e-33  Score=288.15  Aligned_cols=231  Identities=17%  Similarity=0.204  Sum_probs=204.5

Q ss_pred             eeeecCccceeEEEeec----ceEeecCCCccEecccCCC-----CceeEEecCCccCCEEEEEEcCCCCeEEeecCCCC
Q 006825          333 EMCVGHSPIVQELMRRQ----NVEEGNKDSFDLNNNGSSG-----GGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERD  403 (630)
Q Consensus       333 ~~l~GHs~~V~~Lafs~----~laSgS~D~tvr~vWD~~t-----G~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~d  403 (630)
                      .+|.||...|.+|+|+|    .|+|||.|++++ +|++.+     +..+.+++ +|...|.+++|+|+|++++       
T Consensus        11 ~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~-~W~~~~~~~~~~~~~~~~~-~h~~~v~~~~~s~dg~~l~-------   81 (319)
T 3frx_A           11 GTLEGHNGWVTSLATSAGQPNLLLSASRDKTLI-SWKLTGDDQKFGVPVRSFK-GHSHIVQDCTLTADGAYAL-------   81 (319)
T ss_dssp             EEECCCSSCEEEEEECSSCTTEEEEEETTSEEE-EEEEEEETTEEEEEEEEEE-CCSSCEEEEEECTTSSEEE-------
T ss_pred             EEEccccceEEEEEccCCCccEEEEecCCccEE-EecCCCCCccccccceEEe-CCcccEEEEEECCCCCEEE-------
Confidence            67899999999999987    699999999999 999864     44567788 9999999999999998774       


Q ss_pred             CccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEE
Q 006825          404 TSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVW  483 (630)
Q Consensus       404 t~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVW  483 (630)
                                            +++.|++|++||+.+++     +++.+.+|...|.+++|+|++++|+||+.|++|+||
T Consensus        82 ----------------------s~s~D~~v~~wd~~~~~-----~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vw  134 (319)
T 3frx_A           82 ----------------------SASWDKTLRLWDVATGE-----TYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVW  134 (319)
T ss_dssp             ----------------------EEETTSEEEEEETTTTE-----EEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEE
T ss_pred             ----------------------EEeCCCEEEEEECCCCC-----eeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEE
Confidence                                  55677899999998775     467899999999999999999999999999999999


Q ss_pred             ECcCCceeeeeecccccCcccceEEEEECCC------CCEEEEeeCCCeeeeecccccccccccccCccccccEEEeC-C
Q 006825          484 QVVESERKGELLEKQEDGHLNMLLLANGSPE------PTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-S  556 (630)
Q Consensus       484 Dl~tg~~~~~l~~~~~~gh~~~V~svafSpd------g~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-s  556 (630)
                      |+. +.++..     +.+|...|..+++.|.      +.++++++.|+.|                       ++|++ +
T Consensus       135 d~~-~~~~~~-----~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i-----------------------~~wd~~~  185 (319)
T 3frx_A          135 TIK-GQCLAT-----LLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMV-----------------------KAWNLNQ  185 (319)
T ss_dssp             ETT-SCEEEE-----ECCCSSCEEEEEECCC------CCEEEEEETTSCE-----------------------EEEETTT
T ss_pred             ECC-CCeEEE-----EeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEE-----------------------EEEECCc
Confidence            996 445555     3789999999999985      4589999999999                       78888 5


Q ss_pred             CCceEEeccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCCCcEEEEEecCCceEEEE-cCCCcEEEEeccee
Q 006825          557 DKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYDISLV-DRLMLRFAYGAFLN  628 (630)
Q Consensus       557 gk~l~tL~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg~~l~t~~H~~~V~sVa-s~~~~~lAsgs~~n  628 (630)
                      .+....+.+|...|++++|+|+ .+|++|+.|++|+|||+.+++++.++.+...|.+++ +|++..++++....
T Consensus       186 ~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~  259 (319)
T 3frx_A          186 FQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATG  259 (319)
T ss_dssp             TEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECCSCEEEEEECSSSSEEEEEETTE
T ss_pred             chhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCcEEEEEEcCCCCEEEEEcCCC
Confidence            6778889999999999999999 999999999999999999999999999778999999 89999888875443

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=6.4e-33  Score=285.14  Aligned_cols=240  Identities=13%  Similarity=0.077  Sum_probs=205.7

Q ss_pred             EEEcCCCceEeeecceeeecCccceeEEEeec---ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCe
Q 006825          318 VKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHK  394 (630)
Q Consensus       318 l~dv~TG~~lt~eef~~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~  394 (630)
                      +|+..+++.+     ..+.+|...|.+++|.|   .|++|+.|++++ +||+.+|+.+.+++ +|...|++|+|+|++++
T Consensus        39 lWd~~~~~~~-----~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~-vwd~~~~~~~~~~~-~h~~~v~~~~~~~~~~~  111 (304)
T 2ynn_A           39 LWNYETQVEV-----RSIQVTETPVRAGKFIARKNWIIVGSDDFRIR-VFNYNTGEKVVDFE-AHPDYIRSIAVHPTKPY  111 (304)
T ss_dssp             EEETTTTEEE-----EEEECCSSCEEEEEEEGGGTEEEEEETTSEEE-EEETTTCCEEEEEE-CCSSCEEEEEECSSSSE
T ss_pred             EEECCCCcee-----EEeeccCCcEEEEEEeCCCCEEEEECCCCEEE-EEECCCCcEEEEEe-CCCCcEEEEEEcCCCCE
Confidence            4444455555     56778999999999998   799999999999 99999999999999 99999999999999999


Q ss_pred             EEeecCCC-----C--C-----ccccCCcceEEEeecCC-Ce--EEEecCCcEEEEEeCCCCcccceeeeeEecccCcCE
Q 006825          395 ERRSSDER-----D--T-----SSEKGGRRSSSATDDSQ-DV--SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSI  459 (630)
Q Consensus       395 lasgS~D~-----d--t-----~s~~gh~~~Vsa~~~s~-d~--l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V  459 (630)
                      +++++.|+     +  .     ..+.+|...|.+++|++ +.  +++|+.|++|++||+.....    ......+|...|
T Consensus       112 l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~----~~~~~~~~~~~v  187 (304)
T 2ynn_A          112 VLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTP----NFTLTTGQERGV  187 (304)
T ss_dssp             EEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSC----SEEEECCCTTCE
T ss_pred             EEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCc----cceeccCCcCcE
Confidence            99999998     1  1     12678999999999987 33  99999999999999876542    122335677899


Q ss_pred             EEEEEcc--CCCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeeccccccc
Q 006825          460 WSIKFSL--DGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSIN  537 (630)
Q Consensus       460 ~sVaFSp--DG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~  537 (630)
                      ..++|+|  ++++|++|+.|++|+|||+.+++++..+     .+|...|..++|+|++.+|++++.|++|          
T Consensus       188 ~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~-----~~h~~~v~~~~~~p~~~~l~s~s~Dg~i----------  252 (304)
T 2ynn_A          188 NYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATL-----EGHMSNVSFAVFHPTLPIIISGSEDGTL----------  252 (304)
T ss_dssp             EEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEE-----ECCSSCEEEEEECSSSSEEEEEETTSCE----------
T ss_pred             EEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceee-----CCCCCCEEEEEECCCCCEEEEEcCCCeE----------
Confidence            9999987  7889999999999999999999888875     7999999999999999999999999999          


Q ss_pred             ccccccCccccccEEEeC-CCCceEEeccCCCCEEEEEEcCC--C-eEEEEECCCcEEEEeCCC
Q 006825          538 RKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSWSKS--Q-HLLSSSMDKTVRLWHLSS  597 (630)
Q Consensus       538 ~~s~s~d~~i~~~~Vwdl-sgk~l~tL~GHs~~V~sLafSPd--~-~LaSgS~DgtVrIWDl~t  597 (630)
                                   ++|+. +++++.++.+|...|.+++|+|+  . +|++|+.|+ +.+|++..
T Consensus       253 -------------~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asg~~~g-~~~~~~~~  302 (304)
T 2ynn_A          253 -------------KIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNG-FTVLSLGN  302 (304)
T ss_dssp             -------------EEEETTTCCEEEEECCSSSSEEEEEECTTCGGGCEEEEETTE-EEEEECC-
T ss_pred             -------------EEEECCCCceeeeccCCCccEEEEEECCCCCceEEEEecCCc-eEEEEecc
Confidence                         88888 78899999999999999999997  3 577776555 77888764

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=6e-33  Score=287.65  Aligned_cols=230  Identities=18%  Similarity=0.209  Sum_probs=196.8

Q ss_pred             ceeeecCccceeEEEeec---ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCC-----
Q 006825          332 FEMCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERD-----  403 (630)
Q Consensus       332 f~~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~d-----  403 (630)
                      +..+.||...|..++|+|   +|++|+.|++|+ +||+.+|+.+.++. +|...|.+++|+|++.++++++.|+.     
T Consensus        58 ~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~-~wd~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd  135 (319)
T 3frx_A           58 VRSFKGHSHIVQDCTLTADGAYALSASWDKTLR-LWDVATGETYQRFV-GHKSDVMSVDIDKKASMIISGSRDKTIKVWT  135 (319)
T ss_dssp             EEEEECCSSCEEEEEECTTSSEEEEEETTSEEE-EEETTTTEEEEEEE-CCSSCEEEEEECTTSCEEEEEETTSCEEEEE
T ss_pred             ceEEeCCcccEEEEEECCCCCEEEEEeCCCEEE-EEECCCCCeeEEEc-cCCCcEEEEEEcCCCCEEEEEeCCCeEEEEE
Confidence            377899999999999998   799999999999 99999999999999 99999999999999999999999972     


Q ss_pred             C-----ccccCCcceEEEeecCCC--------eEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCE
Q 006825          404 T-----SSEKGGRRSSSATDDSQD--------VSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRY  470 (630)
Q Consensus       404 t-----~s~~gh~~~Vsa~~~s~d--------~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~  470 (630)
                      .     ..+.+|...|.++.+.+.        .+++++.|++|++||+...+     ....+.+|...|++++|+|+|++
T Consensus       136 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~-----~~~~~~~h~~~v~~~~~sp~g~~  210 (319)
T 3frx_A          136 IKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQ-----IEADFIGHNSNINTLTASPDGTL  210 (319)
T ss_dssp             TTSCEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTE-----EEEEECCCCSCEEEEEECTTSSE
T ss_pred             CCCCeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcch-----hheeecCCCCcEEEEEEcCCCCE
Confidence            1     226789999999888764        48999999999999997653     46778999999999999999999


Q ss_pred             EEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCcccccc
Q 006825          471 LASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPE  550 (630)
Q Consensus       471 LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~  550 (630)
                      |++|+.|++|+|||+.+++.+..+     . +...|.+++|+|++.+++++..++ +                       
T Consensus       211 l~s~~~dg~i~iwd~~~~~~~~~~-----~-~~~~v~~~~~sp~~~~la~~~~~~-i-----------------------  260 (319)
T 3frx_A          211 IASAGKDGEIMLWNLAAKKAMYTL-----S-AQDEVFSLAFSPNRYWLAAATATG-I-----------------------  260 (319)
T ss_dssp             EEEEETTCEEEEEETTTTEEEEEE-----E-CCSCEEEEEECSSSSEEEEEETTE-E-----------------------
T ss_pred             EEEEeCCCeEEEEECCCCcEEEEe-----c-CCCcEEEEEEcCCCCEEEEEcCCC-c-----------------------
Confidence            999999999999999998887774     2 236799999999999999886554 6                       


Q ss_pred             EEEeCC-CCceEEe--------ccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCCC
Q 006825          551 TVFALS-DKPICSF--------QGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSK  598 (630)
Q Consensus       551 ~Vwdls-gk~l~tL--------~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg  598 (630)
                      ++|++. +..+..+        ..|...|.+++|+|+ ++|++|+.|++|+|||+.++
T Consensus       261 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t~  318 (319)
T 3frx_A          261 KVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTA  318 (319)
T ss_dssp             EEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEEEC
T ss_pred             EEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEEEeec
Confidence            444442 2222222        346778999999999 99999999999999998764

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=1.6e-32  Score=289.25  Aligned_cols=239  Identities=14%  Similarity=0.099  Sum_probs=204.3

Q ss_pred             EEEcCCCceEeeecceeeecCccceeEEEeec---ceEeecCCCccEecccCCCC------ceeEEecCCccCCEEEEEE
Q 006825          318 VKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGG------GMKSKKKGSWFKSIRTVAS  388 (630)
Q Consensus       318 l~dv~TG~~lt~eef~~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG------~~~~~lk~gH~~~V~sVAf  388 (630)
                      +||..+++.+     ..+..|...|..++|+|   .+++|+.|++++ +|++..+      .....+. +|...|.+++|
T Consensus        90 vWd~~~~~~~-----~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~-v~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~  162 (354)
T 2pbi_B           90 VWDSFTTNKE-----HAVTMPCTWVMACAYAPSGCAIACGGLDNKCS-VYPLTFDKNENMAAKKKSVA-MHTNYLSACSF  162 (354)
T ss_dssp             EEETTTCCEE-----EEEECSSSCCCEEEECTTSSEEEEESTTSEEE-EEECCCCTTCCSGGGCEEEE-ECSSCEEEEEE
T ss_pred             EEECCCCCcc-----eEEecCCCCEEEEEECCCCCEEEEeeCCCCEE-EEEEeccccccccccceeee-ccCCcEEEEEE
Confidence            4444445544     55667888999999999   899999999999 9998654      3456666 89999999999


Q ss_pred             cCCCCeEEeecCCC-----C--C----ccccCCcceEEEeecCC--C--eEEEecCCcEEEEEeCCCCcccceeeeeEec
Q 006825          389 SVTGHKERRSSDER-----D--T----SSEKGGRRSSSATDDSQ--D--VSFHGQERVRVRQYGKSCKDLTALYKCQEIQ  453 (630)
Q Consensus       389 SpdG~~lasgS~D~-----d--t----~s~~gh~~~Vsa~~~s~--d--~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~  453 (630)
                      +|+++++++++.|+     +  +    ..+.+|...|.++++.+  +  .+++|+.|++|++||+.+++     +++.+.
T Consensus       163 ~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~-----~~~~~~  237 (354)
T 2pbi_B          163 TNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQ-----CVQAFE  237 (354)
T ss_dssp             CSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCC-----EEEEEC
T ss_pred             eCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCc-----EEEEec
Confidence            99999999999987     2  2    22678999999888765  3  39999999999999998764     577899


Q ss_pred             ccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeeccc
Q 006825          454 AHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRG  533 (630)
Q Consensus       454 gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~  533 (630)
                      +|...|++++|+|++++|++|+.|++|+|||+..+..+..+.   ...+...+.+++|+|++.++++++.|++|      
T Consensus       238 ~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~---~~~~~~~~~~~~~s~~g~~l~~g~~d~~i------  308 (354)
T 2pbi_B          238 THESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYS---KESIIFGASSVDFSLSGRLLFAGYNDYTI------  308 (354)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC---CTTCCSCEEEEEECTTSSEEEEEETTSCE------
T ss_pred             CCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEc---CCCcccceeEEEEeCCCCEEEEEECCCcE------
Confidence            999999999999999999999999999999999877655431   12344578899999999999999999999      


Q ss_pred             ccccccccccCccccccEEEeC-CCCceEEeccCCCCEEEEEEcCC-CeEEEEECCCcEEEEe
Q 006825          534 RSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWH  594 (630)
Q Consensus       534 ~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWD  594 (630)
                                       ++|++ +++.+..+.+|...|++++|+|+ .+|++|+.|++|+||+
T Consensus       309 -----------------~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~  354 (354)
T 2pbi_B          309 -----------------NVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA  354 (354)
T ss_dssp             -----------------EEEETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred             -----------------EEEECCCCceEEEEECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence                             88888 78889999999999999999999 9999999999999996

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=4.1e-32  Score=289.49  Aligned_cols=275  Identities=19%  Similarity=0.199  Sum_probs=222.1

Q ss_pred             eeecCccceeEEEeec---ceEeecCCCccEecccCCCCceeEEecCCccC------------------CEEEEEEcCCC
Q 006825          334 MCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFK------------------SIRTVASSVTG  392 (630)
Q Consensus       334 ~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~------------------~V~sVAfSpdG  392 (630)
                      ...+|...|.+++|+|   +||+|+ |++++ +|++.+|+.+.++. +|..                  .|++|+|+|+|
T Consensus        59 ~~~~h~~~V~~v~fspdg~~la~g~-~~~v~-i~~~~~g~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg  135 (393)
T 1erj_A           59 KSLDHTSVVCCVKFSNDGEYLATGC-NKTTQ-VYRVSDGSLVARLS-DDSAANKDPENLNTSSSPSSDLYIRSVCFSPDG  135 (393)
T ss_dssp             EEEECSSCCCEEEECTTSSEEEEEC-BSCEE-EEETTTCCEEEEEC-C-----------------CCCCBEEEEEECTTS
T ss_pred             EecCCCCEEEEEEECCCCCEEEEEc-CCcEE-EEEecCCCEEEEec-CccccccccccccccccCCCceeEEEEEECCCC
Confidence            3447999999999999   788877 68999 99999999998887 5542                  49999999999


Q ss_pred             CeEEeecCCC-----C--C----ccccCCcceEEEeecCCCe--EEEecCCcEEEEEeCCCCcccceeeeeEecccCcCE
Q 006825          393 HKERRSSDER-----D--T----SSEKGGRRSSSATDDSQDV--SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSI  459 (630)
Q Consensus       393 ~~lasgS~D~-----d--t----~s~~gh~~~Vsa~~~s~d~--l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V  459 (630)
                      +++++++.|+     +  +    ..+.+|...|.++.|++++  +++++.|++|++||+.+++     +...+. |...|
T Consensus       136 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~-----~~~~~~-~~~~v  209 (393)
T 1erj_A          136 KFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQ-----CSLTLS-IEDGV  209 (393)
T ss_dssp             SEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE-----EEEEEE-CSSCE
T ss_pred             CEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCe-----eEEEEE-cCCCc
Confidence            9999999987     2  2    2268899999999999887  9999999999999998764     234444 66789


Q ss_pred             EEEEEcc-CCCEEEEEeCCCcEEEEECcCCceeeeeec--ccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccc
Q 006825          460 WSIKFSL-DGRYLASAGEDCVIHVWQVVESERKGELLE--KQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSI  536 (630)
Q Consensus       460 ~sVaFSp-DG~~LASgS~DgtIrVWDl~tg~~~~~l~~--~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~  536 (630)
                      .+++|+| +|++|++|+.|++|+|||+.++..+..+..  ....+|...|.+++|+|++.+|++++.|+.|++|+.....
T Consensus       210 ~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~  289 (393)
T 1erj_A          210 TTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNAN  289 (393)
T ss_dssp             EEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC----
T ss_pred             EEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCC
Confidence            9999999 999999999999999999999887766421  1125799999999999999999999999999777654311


Q ss_pred             cccccccCccccccEEEeCCCCceEEeccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCCCcEEEEEe-cCCceEEEE
Q 006825          537 NRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYDISLV  614 (630)
Q Consensus       537 ~~~s~s~d~~i~~~~Vwdlsgk~l~tL~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg~~l~t~~-H~~~V~sVa  614 (630)
                      ....          ......+.+..++.+|...|.+++|+|+ .+|++|+.|++|+|||+.+++++.++. |...|.+++
T Consensus       290 ~~~~----------~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~  359 (393)
T 1erj_A          290 NKSD----------SKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVA  359 (393)
T ss_dssp             ---------------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEE
T ss_pred             Cccc----------ccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEEE
Confidence            1000          0000134567788999999999999999 999999999999999999999999998 999999998


Q ss_pred             -c------CCCcEEEEecce
Q 006825          615 -D------RLMLRFAYGAFL  627 (630)
Q Consensus       615 -s------~~~~~lAsgs~~  627 (630)
                       .      |.+..+++++.+
T Consensus       360 ~~~~~~~~p~~~~l~sgs~D  379 (393)
T 1erj_A          360 VANGSSLGPEYNVFATGSGD  379 (393)
T ss_dssp             ECSSCTTCTTCEEEEEEETT
T ss_pred             ecCCcCcCCCCCEEEEECCC
Confidence             3      367788888754

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=1.2e-32  Score=293.71  Aligned_cols=289  Identities=15%  Similarity=0.206  Sum_probs=217.1

Q ss_pred             ceeecCCCCcccCCCccccccCCCCCcccccccEEEEECCCCcEEEEeeecCCCceeEEEEcCCCceEeeecceeeecCc
Q 006825          260 SMSINGNGNYIGNSGEVVEDFDGNGTAGVAEQGCLIKNLDNGKEFVVNEIQEDGTWKKVKEVGTGRQLTIEEFEMCVGHS  339 (630)
Q Consensus       260 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~LddG~~~~v~e~~~dg~~~~l~dv~TG~~lt~eef~~l~GHs  339 (630)
                      .+.+||||++|+..+               +...+||++.+|+...........    ..+.   +.+   .......+.
T Consensus        69 ~v~fspdg~~la~g~---------------~~~v~i~~~~~g~~~~~l~~~~~~----~~~~---~~~---~~~~~~~~~  123 (393)
T 1erj_A           69 CVKFSNDGEYLATGC---------------NKTTQVYRVSDGSLVARLSDDSAA----NKDP---ENL---NTSSSPSSD  123 (393)
T ss_dssp             EEEECTTSSEEEEEC---------------BSCEEEEETTTCCEEEEECC---------------------------CCC
T ss_pred             EEEECCCCCEEEEEc---------------CCcEEEEEecCCCEEEEecCcccc----cccc---ccc---cccccCCCc
Confidence            389999999993322               357899999999876543321100    0110   111   011223455


Q ss_pred             cceeEEEeec---ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCC-----CC--cc---
Q 006825          340 PIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDER-----DT--SS---  406 (630)
Q Consensus       340 ~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~-----dt--~s---  406 (630)
                      ..|.+++|+|   .|++|+.|++|+ +||+.+++.+..++ +|...|.+++|+|+|+++++++.|+     +.  ..   
T Consensus       124 ~~v~~v~~s~dg~~l~s~~~d~~i~-iwd~~~~~~~~~~~-~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~  201 (393)
T 1erj_A          124 LYIRSVCFSPDGKFLATGAEDRLIR-IWDIENRKIVMILQ-GHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSL  201 (393)
T ss_dssp             CBEEEEEECTTSSEEEEEETTSCEE-EEETTTTEEEEEEC-CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE
T ss_pred             eeEEEEEECCCCCEEEEEcCCCeEE-EEECCCCcEEEEEc-cCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEE
Confidence            5799999998   799999999999 99999999999998 9999999999999999999999987     21  11   


Q ss_pred             ccCCcceEEEeecCC-Ce--EEEecCCcEEEEEeCCCCccccee--eeeEecccCcCEEEEEEccCCCEEEEEeCCCcEE
Q 006825          407 EKGGRRSSSATDDSQ-DV--SFHGQERVRVRQYGKSCKDLTALY--KCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIH  481 (630)
Q Consensus       407 ~~gh~~~Vsa~~~s~-d~--l~Sgs~Dg~VriWd~~~~el~~~~--~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIr  481 (630)
                      ...+...+.++.+++ ++  +++|+.|++|++||..++.+....  ......+|...|++|+|+|+|++|++|+.|++|+
T Consensus       202 ~~~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~  281 (393)
T 1erj_A          202 TLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVK  281 (393)
T ss_dssp             EEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred             EEEcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEE
Confidence            223455677788876 54  899999999999999876531110  0012268999999999999999999999999999


Q ss_pred             EEECcCCceeeee-------ecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEe
Q 006825          482 VWQVVESERKGEL-------LEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFA  554 (630)
Q Consensus       482 VWDl~tg~~~~~l-------~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwd  554 (630)
                      |||+.+.......       ....+.+|...|.+++|+|++.+|++++.|+.|                       ++|+
T Consensus       282 ~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v-----------------------~iwd  338 (393)
T 1erj_A          282 LWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGV-----------------------LFWD  338 (393)
T ss_dssp             EEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEE-----------------------EEEE
T ss_pred             EEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeE-----------------------EEEE
Confidence            9999764321110       011246899999999999999999999999999                       8888


Q ss_pred             C-CCCceEEeccCCCCEEEEEEcC------C-CeEEEEECCCcEEEEeCCCC
Q 006825          555 L-SDKPICSFQGHLDDVLDLSWSK------S-QHLLSSSMDKTVRLWHLSSK  598 (630)
Q Consensus       555 l-sgk~l~tL~GHs~~V~sLafSP------d-~~LaSgS~DgtVrIWDl~tg  598 (630)
                      . +++++..+.+|...|.+++|++      + .+|+||+.|++|+||++...
T Consensus       339 ~~~~~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~~  390 (393)
T 1erj_A          339 KKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKKI  390 (393)
T ss_dssp             TTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEEC
T ss_pred             CCCCeEEEEECCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECccccc
Confidence            8 7889999999999999999986      5 78999999999999997643

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=1.6e-33  Score=298.99  Aligned_cols=268  Identities=16%  Similarity=0.159  Sum_probs=219.1

Q ss_pred             eeecCCCCcccCCCccccccCCCCCcccccccEEEEECCCCcEEEEeeecCCCceeEEEEcCCCceEeeecceeeecCcc
Q 006825          261 MSINGNGNYIGNSGEVVEDFDGNGTAGVAEQGCLIKNLDNGKEFVVNEIQEDGTWKKVKEVGTGRQLTIEEFEMCVGHSP  340 (630)
Q Consensus       261 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~LddG~~~~v~e~~~dg~~~~l~dv~TG~~lt~eef~~l~GHs~  340 (630)
                      |.++|||++|              +++..|+.++||++.                       +++.+     ..+.+|..
T Consensus        72 ~~~sp~~~~l--------------~s~s~D~~v~iWd~~-----------------------~~~~~-----~~~~~h~~  109 (380)
T 3iz6_a           72 LDWTPEKNWI--------------VSASQDGRLIVWNAL-----------------------TSQKT-----HAIKLHCP  109 (380)
T ss_dssp             EEECTTSSCE--------------EEEETTSEEEEEETT-----------------------TTEEE-----EEEECCCT
T ss_pred             EEEcCCCCEE--------------EEEeCCCeEEEEECC-----------------------CCccc-----eEEecCCC
Confidence            7899999998              455556667766654                       44444     56778999


Q ss_pred             ceeEEEeec---ceEeecCCCccEecccCCCCc-------eeEEecCCccCCEEEEEEcCCC-CeEEeecCCC-----CC
Q 006825          341 IVQELMRRQ---NVEEGNKDSFDLNNNGSSGGG-------MKSKKKGSWFKSIRTVASSVTG-HKERRSSDER-----DT  404 (630)
Q Consensus       341 ~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~-------~~~~lk~gH~~~V~sVAfSpdG-~~lasgS~D~-----dt  404 (630)
                      .|..++|+|   .|++|+.|++++ +|++.++.       ....+. +|...|.+++|+|++ .++++++.|+     +.
T Consensus       110 ~v~~~~~s~~g~~las~~~d~~v~-iw~~~~~~~~~~~~~~~~~~~-gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~  187 (380)
T 3iz6_a          110 WVMECAFAPNGQSVACGGLDSACS-IFNLSSQADRDGNMPVSRVLT-GHKGYASSCQYVPDQETRLITGSGDQTCVLWDV  187 (380)
T ss_dssp             TCCCCEECTTSSEEEECCSSSCCE-EEECCCCSSCCCSSTTCCBCC-CCSSCCCCCBCCSSSSSCEEEECTTSCEEEECT
T ss_pred             CEEEEEECCCCCEEEEeeCCCcEE-EEECCCCccccCCccceeecc-CCCcceEEEEEecCCCCEEEEECCCCcEEEEEc
Confidence            999999999   799999999999 99987643       334556 999999999999964 5799999987     21


Q ss_pred             --cc---------ccCCcceEEEeecCC---CeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCE
Q 006825          405 --SS---------EKGGRRSSSATDDSQ---DVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRY  470 (630)
Q Consensus       405 --~s---------~~gh~~~Vsa~~~s~---d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~  470 (630)
                        +.         ..+|...|.++.+.+   ..+++|+.|++|++||+....    ..++++.+|.+.|++|+|+|+|++
T Consensus       188 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~----~~~~~~~~h~~~v~~v~~~p~~~~  263 (380)
T 3iz6_a          188 TTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITS----RAVRTYHGHEGDINSVKFFPDGQR  263 (380)
T ss_dssp             TTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTC----CCCEEECCCSSCCCEEEECTTSSE
T ss_pred             CCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCC----cceEEECCcCCCeEEEEEecCCCe
Confidence              11         267889999988865   349999999999999986432    246789999999999999999999


Q ss_pred             EEEEeCCCcEEEEECcCCceeeeeeccc--ccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCcccc
Q 006825          471 LASAGEDCVIHVWQVVESERKGELLEKQ--EDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVV  548 (630)
Q Consensus       471 LASgS~DgtIrVWDl~tg~~~~~l~~~~--~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~  548 (630)
                      |+||+.|++|+|||+.++..+..+....  ...+...|.+++|+|++.++++++.|+.|                     
T Consensus       264 l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i---------------------  322 (380)
T 3iz6_a          264 FGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDC---------------------  322 (380)
T ss_dssp             EEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCE---------------------
T ss_pred             EEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCE---------------------
Confidence            9999999999999999998776653111  12233458899999999999999999999                     


Q ss_pred             ccEEEeC-CCCceEEe----ccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCCCc
Q 006825          549 PETVFAL-SDKPICSF----QGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKT  599 (630)
Q Consensus       549 ~~~Vwdl-sgk~l~tL----~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg~  599 (630)
                        ++|+. .++.+..+    .+|...|++++|+|+ .+|+||+.|++|+||++..++
T Consensus       323 --~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~~~  377 (380)
T 3iz6_a          323 --YVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSGHR  377 (380)
T ss_dssp             --EEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECCSSS
T ss_pred             --EEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecCCCc
Confidence              78887 66777776    689999999999999 999999999999999998754

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=7.7e-32  Score=275.45  Aligned_cols=260  Identities=16%  Similarity=0.173  Sum_probs=220.6

Q ss_pred             eeeecCccceeEEEeec----ceEeecCCCccEecccCCCCc-----eeEEecCCccCCEEEEEEcCCCCeEEeecCCCC
Q 006825          333 EMCVGHSPIVQELMRRQ----NVEEGNKDSFDLNNNGSSGGG-----MKSKKKGSWFKSIRTVASSVTGHKERRSSDERD  403 (630)
Q Consensus       333 ~~l~GHs~~V~~Lafs~----~laSgS~D~tvr~vWD~~tG~-----~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~d  403 (630)
                      .+|.||+..|++|+|+|    .|+|||.|++|+ +||+.+++     +.++++ +|...|.+++|+|+|+++++++.|+.
T Consensus        32 ~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~-vWd~~~~~~~~~~~~~~l~-~h~~~V~~~~~s~dg~~l~s~~~d~~  109 (340)
T 4aow_A           32 GTLKGHNGWVTQIATTPQFPDMILSASRDKTII-MWKLTRDETNYGIPQRALR-GHSHFVSDVVISSDGQFALSGSWDGT  109 (340)
T ss_dssp             EEECCCSSCEEEEEECTTCTTEEEEEETTSCEE-EEEECCSSSCSEEEEEEEC-CCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred             EEECCccCCEEEEEEeCCCCCEEEEEcCCCeEE-EEECCCCCcccceeeEEEe-CCCCCEEEEEECCCCCEEEEEccccc
Confidence            57899999999999997    699999999999 99987654     566777 99999999999999999999999871


Q ss_pred             -----------CccccCCcceEEEeecCCCe--EEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCC--
Q 006825          404 -----------TSSEKGGRRSSSATDDSQDV--SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDG--  468 (630)
Q Consensus       404 -----------t~s~~gh~~~Vsa~~~s~d~--l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG--  468 (630)
                                 ......+...+....+.+..  +++++.|+.+++|+......    ....+.+|...|..++|++++  
T Consensus       110 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~  185 (340)
T 4aow_A          110 LRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCK----YTVQDESHSEWVSCVRFSPNSSN  185 (340)
T ss_dssp             EEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEE----EEECSSSCSSCEEEEEECSCSSS
T ss_pred             ceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCce----EEEEeccccCcccceEEccCCCC
Confidence                       11144555566666666655  89999999999999865432    345578999999999999865  


Q ss_pred             CEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCcccc
Q 006825          469 RYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVV  548 (630)
Q Consensus       469 ~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~  548 (630)
                      .++++++.|++|++||+.+++.+..+     .+|...|.+++|+|++++|++++.|+.|                     
T Consensus       186 ~~~~s~~~d~~i~i~d~~~~~~~~~~-----~~h~~~v~~~~~s~~~~~l~s~s~Dg~i---------------------  239 (340)
T 4aow_A          186 PIIVSCGWDKLVKVWNLANCKLKTNH-----IGHTGYLNTVTVSPDGSLCASGGKDGQA---------------------  239 (340)
T ss_dssp             CEEEEEETTSCEEEEETTTTEEEEEE-----CCCSSCEEEEEECTTSSEEEEEETTCEE---------------------
T ss_pred             cEEEEEcCCCEEEEEECCCCceeeEe-----cCCCCcEEEEEECCCCCEEEEEeCCCeE---------------------
Confidence            58899999999999999998887774     7899999999999999999999999999                     


Q ss_pred             ccEEEeC-CCCceEEeccCCCCEEEEEEcCCCeEEEEECCCcEEEEeCCCCcEEEEEe----------cCCceEEEE-cC
Q 006825          549 PETVFAL-SDKPICSFQGHLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFS----------HSDYDISLV-DR  616 (630)
Q Consensus       549 ~~~Vwdl-sgk~l~tL~GHs~~V~sLafSPd~~LaSgS~DgtVrIWDl~tg~~l~t~~----------H~~~V~sVa-s~  616 (630)
                        ++|++ +.+++..+.+| ..|.+++|+|++++++++.|++|+|||+.++.++..+.          |...|++|+ ++
T Consensus       240 --~iwd~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~  316 (340)
T 4aow_A          240 --MLWDLNEGKHLYTLDGG-DIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSA  316 (340)
T ss_dssp             --EEEETTTTEEEEEEECS-SCEEEEEECSSSSEEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECT
T ss_pred             --EEEEeccCceeeeecCC-ceEEeeecCCCCceeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECC
Confidence              78888 56777777755 68999999999888888899999999999988877652          788999999 99


Q ss_pred             CCcEEEEecce
Q 006825          617 LMLRFAYGAFL  627 (630)
Q Consensus       617 ~~~~lAsgs~~  627 (630)
                      ++.+|++++.+
T Consensus       317 dg~~l~sgs~D  327 (340)
T 4aow_A          317 DGQTLFAGYTD  327 (340)
T ss_dssp             TSSEEEEEETT
T ss_pred             CCCEEEEEeCC
Confidence            99999998754

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.6e-32  Score=284.83  Aligned_cols=305  Identities=13%  Similarity=0.104  Sum_probs=242.8

Q ss_pred             ceeecCCCC-cccCCCccccccCCCCCcccccccEEEEEC----CCCcEEEEeeecCCCceeEEEEcCCCceEeeeccee
Q 006825          260 SMSINGNGN-YIGNSGEVVEDFDGNGTAGVAEQGCLIKNL----DNGKEFVVNEIQEDGTWKKVKEVGTGRQLTIEEFEM  334 (630)
Q Consensus       260 ~~~~s~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~I~~L----ddG~~~~v~e~~~dg~~~~l~dv~TG~~lt~eef~~  334 (630)
                      ++.++|+|+ +|              +++..++.++||++    ++|+.+.-...     ...+...-.       ....
T Consensus        50 ~~~~s~~~~~~l--------------~~~~~dg~i~iw~~~~~~~~~~~~~~~~~-----~~~~~~~~~-------~~~~  103 (425)
T 1r5m_A           50 SSTWNPLDESIL--------------AYGEKNSVARLARIVETDQEGKKYWKLTI-----IAELRHPFA-------LSAS  103 (425)
T ss_dssp             EEEECSSCTTEE--------------EEEETBTEEEEEEEEEC------CEEEEE-----EEEEECCCC-------CC--
T ss_pred             EEEECCCCCcEE--------------EEecCCceEEEEEEecccCCccccccccc-----ccccccccc-------cccc
Confidence            489999999 88              55567788999999    77763110000     000100000       1122


Q ss_pred             eecCccceeEEEeec---ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCC-------C
Q 006825          335 CVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERD-------T  404 (630)
Q Consensus       335 l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~d-------t  404 (630)
                      ..+|...|.+++|+|   .|++|+.|++++ +|| .+++.+..+. +|...|.+++|+|+|+++++++.|+.       +
T Consensus       104 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~-i~~-~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~  180 (425)
T 1r5m_A          104 SGKTTNQVTCLAWSHDGNSIVTGVENGELR-LWN-KTGALLNVLN-FHRAPIVSVKWNKDGTHIISMDVENVTILWNVIS  180 (425)
T ss_dssp             ----CBCEEEEEECTTSSEEEEEETTSCEE-EEE-TTSCEEEEEC-CCCSCEEEEEECTTSSEEEEEETTCCEEEEETTT
T ss_pred             ccCCCCceEEEEEcCCCCEEEEEeCCCeEE-EEe-CCCCeeeecc-CCCccEEEEEECCCCCEEEEEecCCeEEEEECCC
Confidence            356889999999998   799999999999 999 7888999998 99999999999999999999998871       1


Q ss_pred             cc----ccCCcce---------------EEEeecCCCe-EEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEE
Q 006825          405 SS----EKGGRRS---------------SSATDDSQDV-SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKF  464 (630)
Q Consensus       405 ~s----~~gh~~~---------------Vsa~~~s~d~-l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaF  464 (630)
                      ..    ...+...               +.++.+.++. +++++.++.|++|+...++     .+..+.+|...|.+++|
T Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~-----~~~~~~~~~~~i~~~~~  255 (425)
T 1r5m_A          181 GTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKT-----PTGKLIGHHGPISVLEF  255 (425)
T ss_dssp             TEEEEEECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSS-----CSEEECCCSSCEEEEEE
T ss_pred             CcEEEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCc-----eeeeeccCCCceEEEEE
Confidence            11    2333333               6666666666 8999999999999998764     35678899999999999


Q ss_pred             ccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccC
Q 006825          465 SLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLD  544 (630)
Q Consensus       465 SpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d  544 (630)
                      +|++++|++++.|+.|++||+.+++....+     .+|...|.+++|+|++ ++++++.|+.|                 
T Consensus       256 ~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~-----~~~~~~i~~~~~~~~~-~l~~~~~d~~i-----------------  312 (425)
T 1r5m_A          256 NDTNKLLLSASDDGTLRIWHGGNGNSQNCF-----YGHSQSIVSASWVGDD-KVISCSMDGSV-----------------  312 (425)
T ss_dssp             ETTTTEEEEEETTSCEEEECSSSBSCSEEE-----CCCSSCEEEEEEETTT-EEEEEETTSEE-----------------
T ss_pred             CCCCCEEEEEcCCCEEEEEECCCCccceEe-----cCCCccEEEEEECCCC-EEEEEeCCCcE-----------------
Confidence            999999999999999999999998877764     6788999999999999 99999999999                 


Q ss_pred             ccccccEEEeC-CCCceEEeccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCCCc--------------------EEE
Q 006825          545 HMVVPETVFAL-SDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKT--------------------CLK  602 (630)
Q Consensus       545 ~~i~~~~Vwdl-sgk~l~tL~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg~--------------------~l~  602 (630)
                            ++|++ +++++..+.+|...|.+++|+|+ .+|++++.|++|+|||+.+++                    ++.
T Consensus       313 ------~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  386 (425)
T 1r5m_A          313 ------RLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYA  386 (425)
T ss_dssp             ------EEEETTTTEEEEEEECTTCCEEEEEECTTSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEE
T ss_pred             ------EEEECCCCcEeEecccCCccEEEEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhh
Confidence                  88888 77888999999999999999999 999999999999999999988                    899


Q ss_pred             EEe-cCC--ceEEEE-cCCCcEEEEecce
Q 006825          603 IFS-HSD--YDISLV-DRLMLRFAYGAFL  627 (630)
Q Consensus       603 t~~-H~~--~V~sVa-s~~~~~lAsgs~~  627 (630)
                      .+. |..  .|++++ ++++..+++++..
T Consensus       387 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~d  415 (425)
T 1r5m_A          387 SYQSSQDNDYIFDLSWNCAGNKISVAYSL  415 (425)
T ss_dssp             EECCTTCCCCEEEEEECTTSSEEEEEESS
T ss_pred             hhcCcccCCceEEEEccCCCceEEEEecC
Confidence            998 766  999999 8888888887654

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=1.7e-32  Score=331.06  Aligned_cols=338  Identities=17%  Similarity=0.152  Sum_probs=277.7

Q ss_pred             ceeecCCCCcccCCCccccccCCCCCcccccccEEEEECCCCcEEEEee--------------------ecCCCceeEEE
Q 006825          260 SMSINGNGNYIGNSGEVVEDFDGNGTAGVAEQGCLIKNLDNGKEFVVNE--------------------IQEDGTWKKVK  319 (630)
Q Consensus       260 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~LddG~~~~v~e--------------------~~~dg~~~~l~  319 (630)
                      .+++||||++|              +++..++.++||++.+|+......                    .+.|| ..++|
T Consensus       620 ~~~~s~~~~~l--------------~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~-~v~vw  684 (1249)
T 3sfz_A          620 HACFSQDGQRI--------------ASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADK-KVKIW  684 (1249)
T ss_dssp             EEEECTTSSEE--------------EEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTS-EEEEE
T ss_pred             EEEECCCCCEE--------------EEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCC-eEEEE
Confidence            47999999999              555667788888887776543311                    12233 47899


Q ss_pred             EcCCCceEeeecceeeecCccceeEEEeec-----ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCe
Q 006825          320 EVGTGRQLTIEEFEMCVGHSPIVQELMRRQ-----NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHK  394 (630)
Q Consensus       320 dv~TG~~lt~eef~~l~GHs~~V~~Lafs~-----~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~  394 (630)
                      ++.+|+.+     .++.+|...|.+++|+|     .+++|+.|++++ +||+.+++++.++. +|...|.+++|+|+|++
T Consensus       685 d~~~~~~~-----~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~-vwd~~~~~~~~~~~-~h~~~v~~~~~sp~~~~  757 (1249)
T 3sfz_A          685 DSATGKLV-----HTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLK-LWDLNQKECRNTMF-GHTNSVNHCRFSPDDEL  757 (1249)
T ss_dssp             ETTTCCEE-----EEEECCSSCEEEEEECSSSSCCEEEEEETTSCEE-EEETTSSSEEEEEC-CCSSCEEEEEECSSTTE
T ss_pred             ECCCCceE-----EEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEE-EEECCCcchhheec-CCCCCEEEEEEecCCCE
Confidence            99999988     88899999999999998     699999999999 99999999999998 99999999999999999


Q ss_pred             EEeecCCC-----CC--cc-----------------------------------------------------------cc
Q 006825          395 ERRSSDER-----DT--SS-----------------------------------------------------------EK  408 (630)
Q Consensus       395 lasgS~D~-----dt--~s-----------------------------------------------------------~~  408 (630)
                      +++++.|+     +.  ..                                                           ..
T Consensus       758 l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~  837 (1249)
T 3sfz_A          758 LASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHT  837 (1249)
T ss_dssp             EEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEEC
T ss_pred             EEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcC
Confidence            99999887     11  00                                                           11


Q ss_pred             CCcceEEEeecCCCe--EEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECc
Q 006825          409 GGRRSSSATDDSQDV--SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVV  486 (630)
Q Consensus       409 gh~~~Vsa~~~s~d~--l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~  486 (630)
                      +|...|.++.+++++  +++++.++.|++|+..++.     .+..+.+|...|++++|+|+|++|++++.|++|++|++.
T Consensus       838 ~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~-----~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~  912 (1249)
T 3sfz_A          838 GHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRL-----KVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETK  912 (1249)
T ss_dssp             SSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTE-----EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHH
T ss_pred             CCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCc-----eeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEcc
Confidence            667778888888877  8899999999999997664     567889999999999999999999999999999999965


Q ss_pred             CCcee--------------------------------------------------------------------eee----
Q 006825          487 ESERK--------------------------------------------------------------------GEL----  494 (630)
Q Consensus       487 tg~~~--------------------------------------------------------------------~~l----  494 (630)
                      +....                                                                    ..+    
T Consensus       913 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~  992 (1249)
T 3sfz_A          913 KVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPN  992 (1249)
T ss_dssp             HHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTT
T ss_pred             ccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCC
Confidence            31000                                                                    000    


Q ss_pred             --ecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccc--------------------cccccCccccccEE
Q 006825          495 --LEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINR--------------------KSLSLDHMVVPETV  552 (630)
Q Consensus       495 --~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~--------------------~s~s~d~~i~~~~V  552 (630)
                        ......+|...|.+++|+|+++++++++.|+.|++|+.......                    ...+.++.+   ++
T Consensus       993 ~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~v---~v 1069 (1249)
T 3sfz_A          993 NRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDSRLLSWSFDGTV---KV 1069 (1249)
T ss_dssp             TSCEEECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEECCBCCSSCEEEEEECSSSEEEEEESSSEE---EE
T ss_pred             CceeeecccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCceEEEecCCCcEEEEEEcCCCcEEEEECCCcE---EE
Confidence              00113568888999999999999999999999999987553211                    112223333   79


Q ss_pred             EeC-CCCceEEeccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCCCcEEEEEe-cCCceEEEE-cCCCcEEEEecce
Q 006825          553 FAL-SDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYDISLV-DRLMLRFAYGAFL  627 (630)
Q Consensus       553 wdl-sgk~l~tL~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg~~l~t~~-H~~~V~sVa-s~~~~~lAsgs~~  627 (630)
                      |++ +++.+..+.+|...|++++|+|+ .+|++++.|++|+|||+.+++++.++. |...|++++ ++++..+++++.+
T Consensus      1070 wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~~~~l~~h~~~v~~~~~s~dg~~lat~~~d 1148 (1249)
T 3sfz_A         1070 WNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDN 1148 (1249)
T ss_dssp             EETTTTCCCEEEECCSSCCCCEEECSSSSSCEEECCSSCCCEECSSSSSCSBCCCCCSSCEEEEEECSSSSEEEEEETT
T ss_pred             EECCCCceeEEEcccCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCcceeeeeccCCCcEEEEEECCCCCEEEEEeCC
Confidence            998 78999999999999999999999 999999999999999999999999988 999999999 9999999998754

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=1.3e-31  Score=279.70  Aligned_cols=236  Identities=17%  Similarity=0.189  Sum_probs=200.1

Q ss_pred             eecceeeecCccceeEEEe-----ec----ceEeecCCCccEecccCCCC-------ceeEEecCCccCCEEEEEEcCCC
Q 006825          329 IEEFEMCVGHSPIVQELMR-----RQ----NVEEGNKDSFDLNNNGSSGG-------GMKSKKKGSWFKSIRTVASSVTG  392 (630)
Q Consensus       329 ~eef~~l~GHs~~V~~Laf-----s~----~laSgS~D~tvr~vWD~~tG-------~~~~~lk~gH~~~V~sVAfSpdG  392 (630)
                      ++...+|.||+..|++|+|     .+    .|+||+.|++|+ +||+.++       .....+. +|...|.+++|+|++
T Consensus        11 ~~~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~-iWd~~~~~~~~~~~~~~~~l~-~h~~~V~~~~~~~~~   88 (343)
T 2xzm_R           11 VVKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVM-IWKLYEEEQNGYFGIPHKALT-GHNHFVSDLALSQEN   88 (343)
T ss_dssp             EEEEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEE-EEEECSSCCSSBSEEEEEEEC-CCSSCEEEEEECSST
T ss_pred             eeeeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEE-EEECCcCCcccccccccchhc-cCCCceEEEEECCCC
Confidence            3445789999999999999     54    799999999999 9998753       4566777 999999999999998


Q ss_pred             CeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEE
Q 006825          393 HKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLA  472 (630)
Q Consensus       393 ~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LA  472 (630)
                      .++                             ++++.|++|++||+.+++     +++.+.+|...|++++|+|++++|+
T Consensus        89 ~~l-----------------------------~s~s~D~~v~lwd~~~~~-----~~~~~~~h~~~v~~v~~sp~~~~l~  134 (343)
T 2xzm_R           89 CFA-----------------------------ISSSWDKTLRLWDLRTGT-----TYKRFVGHQSEVYSVAFSPDNRQIL  134 (343)
T ss_dssp             TEE-----------------------------EEEETTSEEEEEETTSSC-----EEEEEECCCSCEEEEEECSSTTEEE
T ss_pred             CEE-----------------------------EEEcCCCcEEEEECCCCc-----EEEEEcCCCCcEEEEEECCCCCEEE
Confidence            776                             456677899999998764     4678999999999999999999999


Q ss_pred             EEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCC----------CEEEEeeCCCeeeeecccccccccccc
Q 006825          473 SAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEP----------TSLSPKHLDNHLEKKRRGRSINRKSLS  542 (630)
Q Consensus       473 SgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg----------~~lasgs~Dg~I~i~~~~~~~~~~s~s  542 (630)
                      +|+.|++|+|||+... ....+  ....+|...|.+++|+|++          .++++++.|+.|               
T Consensus       135 s~~~d~~i~~wd~~~~-~~~~~--~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i---------------  196 (343)
T 2xzm_R          135 SAGAEREIKLWNILGE-CKFSS--AEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRL---------------  196 (343)
T ss_dssp             EEETTSCEEEEESSSC-EEEEC--CTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEE---------------
T ss_pred             EEcCCCEEEEEeccCC-ceeee--ecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEE---------------
Confidence            9999999999999743 32221  1134788999999999987          789999999999               


Q ss_pred             cCccccccEEEeCCCCceEEeccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeCC-CCcEEEEEecCCceEEEE-cCCCc
Q 006825          543 LDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLS-SKTCLKIFSHSDYDISLV-DRLML  619 (630)
Q Consensus       543 ~d~~i~~~~Vwdlsgk~l~tL~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~-tg~~l~t~~H~~~V~sVa-s~~~~  619 (630)
                              ++|+...+.+.++.+|...|++++|+|+ ++|++|+.|++|+|||+. ...+...+.+...|++++ +|++.
T Consensus       197 --------~iwd~~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~~  268 (343)
T 2xzm_R          197 --------KVWNTNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREFDAGSTINQIAFNPKLQ  268 (343)
T ss_dssp             --------EEEETTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSEEEECSSCEEEEEECSSSC
T ss_pred             --------EEEcCCCceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCcccceeecCCCcEEEEEECCCCC
Confidence                    7888777788889999999999999999 999999999999999994 455666777777899999 88888


Q ss_pred             EEEEecc
Q 006825          620 RFAYGAF  626 (630)
Q Consensus       620 ~lAsgs~  626 (630)
                      +++.+..
T Consensus       269 ~la~~~d  275 (343)
T 2xzm_R          269 WVAVGTD  275 (343)
T ss_dssp             EEEEEES
T ss_pred             EEEEECC
Confidence            8876643

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=9.5e-32  Score=279.98  Aligned_cols=228  Identities=17%  Similarity=0.177  Sum_probs=182.6

Q ss_pred             cCccceeEEEeec---ceEeecCCCccEecccCCC-------CceeEEecCCccCCEEEEEEcCCCCeEEeecCCC----
Q 006825          337 GHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSG-------GGMKSKKKGSWFKSIRTVASSVTGHKERRSSDER----  402 (630)
Q Consensus       337 GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~t-------G~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~----  402 (630)
                      +|...|.+|+|+|   .|++|+.|++|+ +||+..       ++.+.+++ +|...|.+|+|+|+|++|++++.|+    
T Consensus        56 ~h~~~v~~v~~sp~~~~las~s~D~~v~-iw~~~~~~~~~~~~~~~~~~~-~h~~~V~~v~~sp~g~~las~s~D~~v~i  133 (330)
T 2hes_X           56 AHKKAIRSVAWRPHTSLLAAGSFDSTVS-IWAKEESADRTFEMDLLAIIE-GHENEVKGVAWSNDGYYLATCSRDKSVWI  133 (330)
T ss_dssp             CCCSCEEEEEECTTSSEEEEEETTSCEE-EEEC-------CCCEEEEEEC-----CEEEEEECTTSCEEEEEETTSCEEE
T ss_pred             CccCCEEEEEECCCCCEEEEEeCCCcEE-EEEcccCcCccccceeEEEEc-CCCCcEEEEEECCCCCEEEEEeCCCEEEE
Confidence            3999999999998   799999999999 999853       45667777 9999999999999999999999987    


Q ss_pred             -CC----------ccccCCcceEEEeecCCCe--EEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccC--
Q 006825          403 -DT----------SSEKGGRRSSSATDDSQDV--SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLD--  467 (630)
Q Consensus       403 -dt----------~s~~gh~~~Vsa~~~s~d~--l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpD--  467 (630)
                       +.          ..+.+|...|.++.|++++  +++++.|++|++|+.....   ..++.++.+|.+.|++++|+|+  
T Consensus       134 wd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~---~~~~~~~~~h~~~v~~~~~~~~~~  210 (330)
T 2hes_X          134 WETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDD---WECVAVLNGHEGTVWSSDFDKTEG  210 (330)
T ss_dssp             EECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTE---EEEEEEECCCSSCEEEEEECCSSS
T ss_pred             EeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCC---eeEEEEccCCCCcEEEEEecCCCC
Confidence             22          1257899999999999887  9999999999999975542   2357889999999999999998  


Q ss_pred             CCEEEEEeCCCcEEEEECcCCc--------eeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeeccccccccc
Q 006825          468 GRYLASAGEDCVIHVWQVVESE--------RKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRK  539 (630)
Q Consensus       468 G~~LASgS~DgtIrVWDl~tg~--------~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~  539 (630)
                      +.+|+||+.|++|+|||+..+.        +...+    ...|...|.+++|++++ +|++++.|+.|            
T Consensus       211 ~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~----~~~h~~~v~~v~~s~~~-~l~s~~~dg~v------------  273 (330)
T 2hes_X          211 VFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAIL----PDVHKRQVYNVAWGFNG-LIASVGADGVL------------  273 (330)
T ss_dssp             SCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEEC----CSCCSSCEEEEEECTTS-CEEEEETTSCE------------
T ss_pred             eeEEEEEeCCCeEEEEEecCCCccccceeEEeeec----ccccccceEEEEEcCCC-EEEEEeCCCEE------------
Confidence            7899999999999999997642        22221    13488999999999766 78899999999            


Q ss_pred             ccccCccccccEEEeC-CC--CceEE-eccCCC-CEEEEEEcC--C-CeEEEEECCCcEEEEeCCC
Q 006825          540 SLSLDHMVVPETVFAL-SD--KPICS-FQGHLD-DVLDLSWSK--S-QHLLSSSMDKTVRLWHLSS  597 (630)
Q Consensus       540 s~s~d~~i~~~~Vwdl-sg--k~l~t-L~GHs~-~V~sLafSP--d-~~LaSgS~DgtVrIWDl~t  597 (630)
                                 ++|+. ++  +.+.. +.+|.. .|++++|+|  + .+|+||+.|++|+|||+.+
T Consensus       274 -----------~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~  328 (330)
T 2hes_X          274 -----------AVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLEK  328 (330)
T ss_dssp             -----------EEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred             -----------EEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence                       66665 33  22333 468987 899999999  6 8999999999999999865

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=1.9e-32  Score=289.32  Aligned_cols=203  Identities=15%  Similarity=0.087  Sum_probs=174.3

Q ss_pred             eecCccceeEEEeec---ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccccCCc
Q 006825          335 CVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGR  411 (630)
Q Consensus       335 l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~  411 (630)
                      +.+|...|.+|+|+|   .|++|+.|++|+ +||+.+++.+..++ +|...|++|+|+|++..                 
T Consensus       135 ~~~h~~~V~~v~~spdg~~l~sgs~dg~v~-iwd~~~~~~~~~~~-~h~~~v~~v~~s~~~~~-----------------  195 (357)
T 4g56_B          135 KYEHDDIVKTLSVFSDGTQAVSGGKDFSVK-VWDLSQKAVLKSYN-AHSSEVNCVAACPGKDT-----------------  195 (357)
T ss_dssp             ECCCSSCEEEEEECSSSSEEEEEETTSCEE-EEETTTTEEEEEEC-CCSSCEEEEEECTTCSS-----------------
T ss_pred             cCCCCCCEEEEEECCCCCEEEEEeCCCeEE-EEECCCCcEEEEEc-CCCCCEEEEEEccCCCc-----------------
Confidence            468999999999999   799999999999 99999999999999 99999999999998642                 


Q ss_pred             ceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccC-CCEEEEEeCCCcEEEEECcCCce
Q 006825          412 RSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLD-GRYLASAGEDCVIHVWQVVESER  490 (630)
Q Consensus       412 ~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpD-G~~LASgS~DgtIrVWDl~tg~~  490 (630)
                                 .+++++.|++|++||+.+++...   ...+..|...|.+|+|+|+ +.+||+|+.|++|+|||+.+++.
T Consensus       196 -----------~~~s~~~dg~v~~wd~~~~~~~~---~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~  261 (357)
T 4g56_B          196 -----------IFLSCGEDGRILLWDTRKPKPAT---RIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDS  261 (357)
T ss_dssp             -----------CEEEEETTSCEEECCTTSSSCBC---BCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGG
T ss_pred             -----------eeeeeccCCceEEEECCCCceee---eeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcE
Confidence                       24677788999999998765321   2235678889999999997 57899999999999999999988


Q ss_pred             eeeeecccccCcccceEEEEECCCC-CEEEEeeCCCeeeeecccccccccccccCccccccEEEeCCCCceEEeccCCCC
Q 006825          491 KGELLEKQEDGHLNMLLLANGSPEP-TSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDD  569 (630)
Q Consensus       491 ~~~l~~~~~~gh~~~V~svafSpdg-~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL~GHs~~  569 (630)
                      +..+     .+|...|.+++|+|++ ++|++++.|++|                       +||++....+..+.+|.+.
T Consensus       262 ~~~~-----~~~~~~v~~l~~sp~~~~~lasgs~D~~i-----------------------~iwd~~~~~~~~~~~H~~~  313 (357)
T 4g56_B          262 AQTS-----AVHSQNITGLAYSYHSSPFLASISEDCTV-----------------------AVLDADFSEVFRDLSHRDF  313 (357)
T ss_dssp             CEEE-----CCCSSCEEEEEECSSSSCCEEEEETTSCE-----------------------EEECTTSCEEEEECCCSSC
T ss_pred             eEEE-----eccceeEEEEEEcCCCCCEEEEEeCCCEE-----------------------EEEECCCCcEeEECCCCCC
Confidence            8774     7899999999999997 679999999999                       8888843344455689999


Q ss_pred             EEEEEEcC-C-CeEEEEECCCcEEEEeCCCC
Q 006825          570 VLDLSWSK-S-QHLLSSSMDKTVRLWHLSSK  598 (630)
Q Consensus       570 V~sLafSP-d-~~LaSgS~DgtVrIWDl~tg  598 (630)
                      |++|+|+| + .+|+|+|.|++|+||++.+.
T Consensus       314 V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~  344 (357)
T 4g56_B          314 VTGVAWSPLDHSKFTTVGWDHKVLHHHLPSE  344 (357)
T ss_dssp             EEEEEECSSSTTEEEEEETTSCEEEEECC--
T ss_pred             EEEEEEeCCCCCEEEEEcCCCeEEEEECCCC
Confidence            99999999 6 89999999999999999764

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=3.9e-30  Score=261.34  Aligned_cols=298  Identities=12%  Similarity=0.070  Sum_probs=238.0

Q ss_pred             CceeecCCCCcccCCCccccccCCCCC--------cccccccEEEEECCCCcEEEEeeecCCCceeEEEEcCCCceEeee
Q 006825          259 DSMSINGNGNYIGNSGEVVEDFDGNGT--------AGVAEQGCLIKNLDNGKEFVVNEIQEDGTWKKVKEVGTGRQLTIE  330 (630)
Q Consensus       259 ~~~~~s~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~I~~LddG~~~~v~e~~~dg~~~~l~dv~TG~~lt~e  330 (630)
                      ..+++||||++++..............        ..-......+.-..+|+.+++..   ||. .++|++.+++...  
T Consensus        13 ~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~---dg~-i~iw~~~~~~~~~--   86 (337)
T 1gxr_A           13 YSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGG---KGC-VKVWDISHPGNKS--   86 (337)
T ss_dssp             CEEEECSSSCEEECCCCTTSSSSTTCCSEEEEEEEECCSSCCCEEEECSSSSEEEEEC---BSE-EEEEETTSTTCCS--
T ss_pred             eEEEECCCCCEEEeecCCCcEeccccCCccccceeccCCCceEEEEEecCCcEEEEcC---CCe-EEEEECCCCCcee--
Confidence            348999999998554422111100000        01122233333446777766654   443 6799999887552  


Q ss_pred             cceee--ecCccceeEEEeec---ceEeecCCCccEecccCCCCc--eeEEecCCccCCEEEEEEcCCCCeEEeecCCCC
Q 006825          331 EFEMC--VGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGG--MKSKKKGSWFKSIRTVASSVTGHKERRSSDERD  403 (630)
Q Consensus       331 ef~~l--~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~--~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~d  403 (630)
                      .+..+  .+|...|..++|+|   .+++++.|++++ +||+.+++  ....+. +|...|.+++|+|+|++++       
T Consensus        87 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~-~~d~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~-------  157 (337)
T 1gxr_A           87 PVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLS-IWDLAAPTPRIKAELT-SSAPACYALAISPDSKVCF-------  157 (337)
T ss_dssp             CSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEE-EEECCCC--EEEEEEE-CSSSCEEEEEECTTSSEEE-------
T ss_pred             eeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEE-EEECCCCCcceeeecc-cCCCceEEEEECCCCCEEE-------
Confidence            22333  38999999999998   699999999999 99999987  566676 8999999999999987774       


Q ss_pred             CccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEE
Q 006825          404 TSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVW  483 (630)
Q Consensus       404 t~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVW  483 (630)
                                            +++.|+.|++|++.+++     .+..+.+|...|.+++|+|++++|++++.|+.|++|
T Consensus       158 ----------------------~~~~dg~v~~~d~~~~~-----~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~  210 (337)
T 1gxr_A          158 ----------------------SCCSDGNIAVWDLHNQT-----LVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSW  210 (337)
T ss_dssp             ----------------------EEETTSCEEEEETTTTE-----EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred             ----------------------EEeCCCcEEEEeCCCCc-----eeeeeecccCceEEEEECCCCCEEEEEecCCcEEEE
Confidence                                  45667789999997764     467889999999999999999999999999999999


Q ss_pred             ECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeCCCCceEEe
Q 006825          484 QVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSF  563 (630)
Q Consensus       484 Dl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL  563 (630)
                      |+.+++.+..+      .+...+.+++|+|++.++++++.++.|                       .+|++.......+
T Consensus       211 d~~~~~~~~~~------~~~~~v~~~~~s~~~~~l~~~~~~~~i-----------------------~~~~~~~~~~~~~  261 (337)
T 1gxr_A          211 DLREGRQLQQH------DFTSQIFSLGYCPTGEWLAVGMESSNV-----------------------EVLHVNKPDKYQL  261 (337)
T ss_dssp             ETTTTEEEEEE------ECSSCEEEEEECTTSSEEEEEETTSCE-----------------------EEEETTSSCEEEE
T ss_pred             ECCCCceEeee------cCCCceEEEEECCCCCEEEEEcCCCcE-----------------------EEEECCCCCeEEE
Confidence            99998877663      466789999999999999999999999                       7888866666788


Q ss_pred             ccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCCCcEEEEEecCCceEEEE-cCCCcEEEEecce
Q 006825          564 QGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYDISLV-DRLMLRFAYGAFL  627 (630)
Q Consensus       564 ~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg~~l~t~~H~~~V~sVa-s~~~~~lAsgs~~  627 (630)
                      .+|...|.+++|+|+ ++|++++.|++|++||+.+++++..+.|...|++++ ++++..+++++..
T Consensus       262 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d  327 (337)
T 1gxr_A          262 HLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSGD  327 (337)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETT
T ss_pred             cCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEecCCCcEEEEEECCCCCEEEEecCC
Confidence            999999999999999 999999999999999999999998777999999999 8888888887644

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=8.8e-31  Score=263.91  Aligned_cols=255  Identities=13%  Similarity=0.106  Sum_probs=224.1

Q ss_pred             ceeeecCccceeEEEeec--ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCC------
Q 006825          332 FEMCVGHSPIVQELMRRQ--NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERD------  403 (630)
Q Consensus       332 f~~l~GHs~~V~~Lafs~--~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~d------  403 (630)
                      ..++.||...|.+|+|..  .|++|+.|++++ +||+.+++....+. +|...|.+++|+|+|+++++++.|+.      
T Consensus        11 ~~~l~~h~~~v~~~~~~~~~~l~s~~~dg~v~-vw~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~   88 (313)
T 3odt_A           11 SATLKGHDQDVRDVVAVDDSKVASVSRDGTVR-LWSKDDQWLGTVVY-TGQGFLNSVCYDSEKELLLFGGKDTMINGVPL   88 (313)
T ss_dssp             EEEECCCSSCEEEEEEEETTEEEEEETTSEEE-EEEESSSEEEEEEE-ECSSCEEEEEEETTTTEEEEEETTSCEEEEET
T ss_pred             HHHhhCCCCCcEEEEecCCCEEEEEEcCCcEE-EEECCCCEEEEEee-cCCccEEEEEECCCCCEEEEecCCCeEEEEEe
Confidence            478899999999999932  899999999999 99999999999988 89999999999999999999998861      


Q ss_pred             --------CccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEcc-CCCEEEEE
Q 006825          404 --------TSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSL-DGRYLASA  474 (630)
Q Consensus       404 --------t~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSp-DG~~LASg  474 (630)
                              ...+.+|...|.++.+....+++++.|+.|++||.  .     ..+..+.+|...|.+++|+| ++++|+++
T Consensus        89 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d~~i~~~d~--~-----~~~~~~~~~~~~v~~~~~~~~~~~~l~~~  161 (313)
T 3odt_A           89 FATSGEDPLYTLIGHQGNVCSLSFQDGVVISGSWDKTAKVWKE--G-----SLVYNLQAHNASVWDAKVVSFSENKFLTA  161 (313)
T ss_dssp             TCCTTSCC-CEECCCSSCEEEEEEETTEEEEEETTSEEEEEET--T-----EEEEEEECCSSCEEEEEEEETTTTEEEEE
T ss_pred             eecCCCCcccchhhcccCEEEEEecCCEEEEEeCCCCEEEEcC--C-----cEEEecccCCCceeEEEEccCCCCEEEEE
Confidence                    22367899999999997777999999999999992  2     24677899999999999999 99999999


Q ss_pred             eCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEe
Q 006825          475 GEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFA  554 (630)
Q Consensus       475 S~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwd  554 (630)
                      +.|+.|++||.  ......+    ...|...+.+++|+|++. +++++.|+.|                       ++|+
T Consensus       162 ~~d~~i~i~d~--~~~~~~~----~~~~~~~i~~~~~~~~~~-~~~~~~dg~i-----------------------~i~d  211 (313)
T 3odt_A          162 SADKTIKLWQN--DKVIKTF----SGIHNDVVRHLAVVDDGH-FISCSNDGLI-----------------------KLVD  211 (313)
T ss_dssp             ETTSCEEEEET--TEEEEEE----CSSCSSCEEEEEEEETTE-EEEEETTSEE-----------------------EEEE
T ss_pred             ECCCCEEEEec--CceEEEE----eccCcccEEEEEEcCCCe-EEEccCCCeE-----------------------EEEE
Confidence            99999999994  3444443    234889999999999998 8899999999                       8888


Q ss_pred             C-CCCceEEeccCCCCEEEEEEcCCCeEEEEECCCcEEEEeCCCCcEEEEEe-cCCceEEEE-cCCCcEEEEec
Q 006825          555 L-SDKPICSFQGHLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYDISLV-DRLMLRFAYGA  625 (630)
Q Consensus       555 l-sgk~l~tL~GHs~~V~sLafSPd~~LaSgS~DgtVrIWDl~tg~~l~t~~-H~~~V~sVa-s~~~~~lAsgs  625 (630)
                      + +++++..+.+|...|++++|+|+++|++++.|++|+|||+.+++++..+. |...|++++ .+++..++.+.
T Consensus       212 ~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  285 (313)
T 3odt_A          212 MHTGDVLRTYEGHESFVYCIKLLPNGDIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGDIIVGSS  285 (313)
T ss_dssp             TTTCCEEEEEECCSSCEEEEEECTTSCEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSCEEEEET
T ss_pred             CCchhhhhhhhcCCceEEEEEEecCCCEEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEccCCCEEEEeC
Confidence            8 68899999999999999999999779999999999999999999999998 999999999 77777665443

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=6.6e-31  Score=268.68  Aligned_cols=239  Identities=17%  Similarity=0.189  Sum_probs=203.4

Q ss_pred             EEEcCCCceEeeecceeeecCccceeEEEeec---ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCe
Q 006825          318 VKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHK  394 (630)
Q Consensus       318 l~dv~TG~~lt~eef~~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~  394 (630)
                      +|+..+|+.+     ..+.+|...|.+++|+|   .|++|+.|++++ +||+.+++.+.+++ +|...|.+++|+|++++
T Consensus        49 iw~~~~~~~~-----~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~-vwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~  121 (312)
T 4ery_A           49 IWGAYDGKFE-----KTISGHKLGISDVAWSSDSNLLVSASDDKTLK-IWDVSSGKCLKTLK-GHSNYVFCCNFNPQSNL  121 (312)
T ss_dssp             EEETTTCCEE-----EEECCCSSCEEEEEECTTSSEEEEEETTSEEE-EEETTTCCEEEEEE-CCSSCEEEEEECSSSSE
T ss_pred             EEeCCCcccc-----hhhccCCCceEEEEEcCCCCEEEEECCCCEEE-EEECCCCcEEEEEc-CCCCCEEEEEEcCCCCE
Confidence            4444455554     56778999999999998   799999999999 99999999999999 99999999999999999


Q ss_pred             EEeecCCC-----C--C----ccccCCcceEEEeecCCCe--EEEecCCcEEEEEeCCCCcccceeeeeE-ecccCcCEE
Q 006825          395 ERRSSDER-----D--T----SSEKGGRRSSSATDDSQDV--SFHGQERVRVRQYGKSCKDLTALYKCQE-IQAHNGSIW  460 (630)
Q Consensus       395 lasgS~D~-----d--t----~s~~gh~~~Vsa~~~s~d~--l~Sgs~Dg~VriWd~~~~el~~~~~v~t-L~gHt~~V~  460 (630)
                      +++++.|+     +  +    ..+..|...|.++.+++++  +++++.|+.|++||...++.     +.. ...|...|.
T Consensus       122 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~-----~~~~~~~~~~~~~  196 (312)
T 4ery_A          122 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC-----LKTLIDDDNPPVS  196 (312)
T ss_dssp             EEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE-----EEEECCSSCCCEE
T ss_pred             EEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCce-----eeEEeccCCCceE
Confidence            99999887     1  1    2267888999999999887  89999999999999987642     333 356778899


Q ss_pred             EEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccc---eEEEEECCCCCEEEEeeCCCeeeeeccccccc
Q 006825          461 SIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNM---LLLANGSPEPTSLSPKHLDNHLEKKRRGRSIN  537 (630)
Q Consensus       461 sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~---V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~  537 (630)
                      .++|+|++++|++++.|+.|++||+.+++.+..+     .+|...   +......+++.++++++.|+.|          
T Consensus       197 ~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i----------  261 (312)
T 4ery_A          197 FVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY-----TGHKNEKYCIFANFSVTGGKWIVSGSEDNLV----------  261 (312)
T ss_dssp             EEEECTTSSEEEEEETTTEEEEEETTTTEEEEEE-----CSSCCSSSCCCEEEECSSSCEEEECCTTSCE----------
T ss_pred             EEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEE-----EecCCceEEEEEEEEeCCCcEEEEECCCCEE----------
Confidence            9999999999999999999999999998877764     455443   2233344678999999999999          


Q ss_pred             ccccccCccccccEEEeC-CCCceEEeccCCCCEEEEEEcCC-CeEEEEE--CCCcEEEEeCC
Q 006825          538 RKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSWSKS-QHLLSSS--MDKTVRLWHLS  596 (630)
Q Consensus       538 ~~s~s~d~~i~~~~Vwdl-sgk~l~tL~GHs~~V~sLafSPd-~~LaSgS--~DgtVrIWDl~  596 (630)
                                   ++|++ +++.+.++.+|...|.+++|+|+ .+|++++  .|++|+||+..
T Consensus       262 -------------~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d  311 (312)
T 4ery_A          262 -------------YIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD  311 (312)
T ss_dssp             -------------EEEETTTCCEEEEECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred             -------------EEEECCCchhhhhhhccCCcEEEEeecCcCCceEEEEccCCccEEEecCC
Confidence                         88888 67889999999999999999999 9999998  59999999864

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=3.1e-31  Score=271.66  Aligned_cols=235  Identities=16%  Similarity=0.137  Sum_probs=195.9

Q ss_pred             eeeecCccceeEEEeec---ceEeecCCCccEecccCCC--CceeEEecCCccCCEEEEEEcCC--CCeEEeecCCCCCc
Q 006825          333 EMCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSG--GGMKSKKKGSWFKSIRTVASSVT--GHKERRSSDERDTS  405 (630)
Q Consensus       333 ~~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~t--G~~~~~lk~gH~~~V~sVAfSpd--G~~lasgS~D~dt~  405 (630)
                      ..+.||...|.+++|+|   .||+|+.|++|+ +||+.+  ++.+.+++ +|...|.+|+|+++  |++|          
T Consensus         3 ~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~-iw~~~~~~~~~~~~l~-gH~~~V~~v~~s~~~~g~~l----------   70 (297)
T 2pm7_B            3 VIANAHNEMIHDAVMDYYGKRMATCSSDKTIK-IFEVEGETHKLIDTLT-GHEGPVWRVDWAHPKFGTIL----------   70 (297)
T ss_dssp             EECCSCSSCEEEEEECTTSSEEEEEETTSCEE-EEEBCSSCBCCCEEEC-CCSSCEEEEEECCGGGCSEE----------
T ss_pred             eeccCCcCceEEEEECCCCCEEEEEeCCCEEE-EEecCCCCcEEEEEEc-cccCCeEEEEecCCCcCCEE----------
Confidence            46789999999999998   799999999999 999974  46788898 99999999999863  5555          


Q ss_pred             cccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccC--CCEEEEEeCCCcEEEE
Q 006825          406 SEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLD--GRYLASAGEDCVIHVW  483 (630)
Q Consensus       406 s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpD--G~~LASgS~DgtIrVW  483 (630)
                                         ++++.|++|++||..+++.   ..+..+.+|...|.+++|+|+  |.+|++|+.|++|++|
T Consensus        71 -------------------~s~s~D~~v~iWd~~~~~~---~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~w  128 (297)
T 2pm7_B           71 -------------------ASCSYDGKVMIWKEENGRW---SQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVV  128 (297)
T ss_dssp             -------------------EEEETTTEEEEEEBSSSCB---CCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEE
T ss_pred             -------------------EEEcCCCEEEEEEcCCCce---EEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEE
Confidence                               5667788999999976642   235678899999999999997  8999999999999999


Q ss_pred             ECcCCceeeeeecccccCcccceEEEEECCC-------------CCEEEEeeCCCeeeeecccccccccccccCcccccc
Q 006825          484 QVVESERKGELLEKQEDGHLNMLLLANGSPE-------------PTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPE  550 (630)
Q Consensus       484 Dl~tg~~~~~l~~~~~~gh~~~V~svafSpd-------------g~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~  550 (630)
                      |+.++......   .+.+|...|.+++|+|+             +++|++++.|++|                       
T Consensus       129 d~~~~~~~~~~---~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v-----------------------  182 (297)
T 2pm7_B          129 EFKENGTTSPI---IIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLV-----------------------  182 (297)
T ss_dssp             EBCSSSCBCCE---EEECCSSCEEEEEECCCC------------CCEEEEEETTSCE-----------------------
T ss_pred             EecCCCceeee---eeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcE-----------------------
Confidence            99876432111   14789999999999997             5799999999999                       


Q ss_pred             EEEeC-CCC----ceEEeccCCCCEEEEEEcCC----CeEEEEECCCcEEEEeCCCCc---EEEEE--e-cCCceEEEE-
Q 006825          551 TVFAL-SDK----PICSFQGHLDDVLDLSWSKS----QHLLSSSMDKTVRLWHLSSKT---CLKIF--S-HSDYDISLV-  614 (630)
Q Consensus       551 ~Vwdl-sgk----~l~tL~GHs~~V~sLafSPd----~~LaSgS~DgtVrIWDl~tg~---~l~t~--~-H~~~V~sVa-  614 (630)
                      ++|++ +++    ++.+|.+|...|.+|+|+|+    .+|+|++.|++|+|||+.+..   ....+  . |...|++++ 
T Consensus       183 ~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~  262 (297)
T 2pm7_B          183 KIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASW  262 (297)
T ss_dssp             EEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEE
T ss_pred             EEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEE
Confidence            67776 333    56789999999999999997    589999999999999998753   22344  3 889999999 


Q ss_pred             cCCCcEEEEecce
Q 006825          615 DRLMLRFAYGAFL  627 (630)
Q Consensus       615 s~~~~~lAsgs~~  627 (630)
                      +|++..|++++.+
T Consensus       263 s~~g~~las~~~D  275 (297)
T 2pm7_B          263 SLSGNVLALSGGD  275 (297)
T ss_dssp             CSSSCCEEEEETT
T ss_pred             CCCCCEEEEEcCC
Confidence            8999999888654

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=1.7e-31  Score=282.48  Aligned_cols=284  Identities=14%  Similarity=0.090  Sum_probs=225.6

Q ss_pred             CceeecCCCCcccCCCccccccCCCCCcccccccEEEEECC---------------------CCcEEEEeeecCCCceeE
Q 006825          259 DSMSINGNGNYIGNSGEVVEDFDGNGTAGVAEQGCLIKNLD---------------------NGKEFVVNEIQEDGTWKK  317 (630)
Q Consensus       259 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~Ld---------------------dG~~~~v~e~~~dg~~~~  317 (630)
                      .++.++|+|++|+              ++..++.++||++.                     +|+.+++..  .||. .+
T Consensus        60 ~~~~~s~~g~~l~--------------~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~dg~-i~  122 (420)
T 3vl1_A           60 KGNTFEKVGSHLY--------------KARLDGHDFLFNTIIRDGSKMLKRADYTAVDTAKLQMRRFILGT--TEGD-IK  122 (420)
T ss_dssp             TTCEEEEEETTEE--------------EEEETTEEEEEECCSEETTTTSCSCCEEEEEEECSSSCEEEEEE--TTSC-EE
T ss_pred             cceeeeecCCeEE--------------EEEcCCcEEEEEecccceeeEEecCCceEEEEEecCCCEEEEEE--CCCC-EE
Confidence            3589999999993              33445566666654                     344444332  3444 67


Q ss_pred             EEEcCCCceEeeecceeeecCccceeEEEeec---ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCe
Q 006825          318 VKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHK  394 (630)
Q Consensus       318 l~dv~TG~~lt~eef~~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~  394 (630)
                      +|++.+++.+     ..+.+|...|.+|+|+|   .|++|+.|++++ +||+.+++.+.+++ +|...|.+++|+|+|++
T Consensus       123 iwd~~~~~~~-----~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~-iwd~~~~~~~~~~~-~h~~~v~~~~~~~~~~~  195 (420)
T 3vl1_A          123 VLDSNFNLQR-----EIDQAHVSEITKLKFFPSGEALISSSQDMQLK-IWSVKDGSNPRTLI-GHRATVTDIAIIDRGRN  195 (420)
T ss_dssp             EECTTSCEEE-----EETTSSSSCEEEEEECTTSSEEEEEETTSEEE-EEETTTCCCCEEEE-CCSSCEEEEEEETTTTE
T ss_pred             EEeCCCccee-----eecccccCccEEEEECCCCCEEEEEeCCCeEE-EEeCCCCcCceEEc-CCCCcEEEEEEcCCCCE
Confidence            9999998887     67789999999999998   799999999999 99999999999998 99999999999999887


Q ss_pred             EEeecCCCCCccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecc---cCcCEEEE---------
Q 006825          395 ERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQA---HNGSIWSI---------  462 (630)
Q Consensus       395 lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~g---Ht~~V~sV---------  462 (630)
                      ++                             +++.|++|++||+.+++     +++.+..   |...|.++         
T Consensus       196 l~-----------------------------s~~~d~~v~iwd~~~~~-----~~~~~~~~~~~~~~v~~~~~~~~~~~~  241 (420)
T 3vl1_A          196 VL-----------------------------SASLDGTIRLWECGTGT-----TIHTFNRKENPHDGVNSIALFVGTDRQ  241 (420)
T ss_dssp             EE-----------------------------EEETTSCEEEEETTTTE-----EEEEECBTTBTTCCEEEEEEEECCCSS
T ss_pred             EE-----------------------------EEcCCCcEEEeECCCCc-----eeEEeecCCCCCCCccEEEEecCCcce
Confidence            74                             55667789999998764     3455553   44445554         


Q ss_pred             ------------EEccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCC-EEEEeeCCCeeee
Q 006825          463 ------------KFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPT-SLSPKHLDNHLEK  529 (630)
Q Consensus       463 ------------aFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~-~lasgs~Dg~I~i  529 (630)
                                  +|+|+|++|++|+.|++|++||+.+++....+    ..+|...|.+++|+|++. ++++++.|+.|  
T Consensus       242 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~----~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i--  315 (420)
T 3vl1_A          242 LHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQL----PSKFTCSCNSLTVDGNNANYIYAGYENGML--  315 (420)
T ss_dssp             CGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEE----CCTTSSCEEEEEECSSCTTEEEEEETTSEE--
T ss_pred             eeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEc----ccccCCCceeEEEeCCCCCEEEEEeCCCeE--
Confidence                        45789999999999999999999998877775    367889999999999998 99999999999  


Q ss_pred             ecccccccccccccCccccccEEEeC-CC-CceEEecc-CCCCEEEEEEcCCCeEEEEECCCcEEEEeCCCC--------
Q 006825          530 KRRGRSINRKSLSLDHMVVPETVFAL-SD-KPICSFQG-HLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSSK--------  598 (630)
Q Consensus       530 ~~~~~~~~~~s~s~d~~i~~~~Vwdl-sg-k~l~tL~G-Hs~~V~sLafSPd~~LaSgS~DgtVrIWDl~tg--------  598 (630)
                                           ++|++ ++ .++..+.+ |...|.++.|.+.++|++++.|++|+||++...        
T Consensus       316 ---------------------~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~  374 (420)
T 3vl1_A          316 ---------------------AQWDLRSPECPVGEFLINEGTPINNVYFAAGALFVSSGFDTSIKLDIISDPESERPAIE  374 (420)
T ss_dssp             ---------------------EEEETTCTTSCSEEEEESTTSCEEEEEEETTEEEEEETTTEEEEEEEECCTTCCSCEEC
T ss_pred             ---------------------EEEEcCCCcCchhhhhccCCCCceEEEeCCCCEEEEecCCccEEEEeccCCCCCcccee
Confidence                                 78888 44 44778877 677888887765489999999999999998763        


Q ss_pred             -cEEEEE-ecCCceEEEE-cCCCc----EEEEecce
Q 006825          599 -TCLKIF-SHSDYDISLV-DRLML----RFAYGAFL  627 (630)
Q Consensus       599 -~~l~t~-~H~~~V~sVa-s~~~~----~lAsgs~~  627 (630)
                       .....+ .|...|.+++ .+++.    .+++|...
T Consensus       375 ~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g  410 (420)
T 3vl1_A          375 FETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNN  410 (420)
T ss_dssp             TTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETTT
T ss_pred             ccCccEEccCCcceEEEEEccCCCCcceEEEEcCCc
Confidence             112223 3889999999 66666    77777543

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=1.3e-30  Score=266.43  Aligned_cols=276  Identities=17%  Similarity=0.144  Sum_probs=214.3

Q ss_pred             CceeecCC-CCcccCCCccccccCCCCCcccccccEEEEECCCCcEEEEeeecCCCceeEEEEcCCCceEeeecceeeec
Q 006825          259 DSMSINGN-GNYIGNSGEVVEDFDGNGTAGVAEQGCLIKNLDNGKEFVVNEIQEDGTWKKVKEVGTGRQLTIEEFEMCVG  337 (630)
Q Consensus       259 ~~~~~s~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~LddG~~~~v~e~~~dg~~~~l~dv~TG~~lt~eef~~l~G  337 (630)
                      ++|+++|+ +++|              +++..|+.++||++..+                       +.........+.|
T Consensus        42 ~~v~~sp~~~~~l--------------~S~s~D~~i~vWd~~~~-----------------------~~~~~~~~~~l~~   84 (340)
T 4aow_A           42 TQIATTPQFPDMI--------------LSASRDKTIIMWKLTRD-----------------------ETNYGIPQRALRG   84 (340)
T ss_dssp             EEEEECTTCTTEE--------------EEEETTSCEEEEEECCS-----------------------SSCSEEEEEEECC
T ss_pred             EEEEEeCCCCCEE--------------EEEcCCCeEEEEECCCC-----------------------CcccceeeEEEeC
Confidence            55677776 4666              44455666777666543                       2222222367899


Q ss_pred             CccceeEEEeec---ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCC-----CC-----
Q 006825          338 HSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDER-----DT-----  404 (630)
Q Consensus       338 Hs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~-----dt-----  404 (630)
                      |...|.+++|+|   .|++|+.|++++ +|+...+....... .+...+..+.+++++.++++++.|+     +.     
T Consensus        85 h~~~V~~~~~s~dg~~l~s~~~d~~i~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~  162 (340)
T 4aow_A           85 HSHFVSDVVISSDGQFALSGSWDGTLR-LWDLTTGTTTRRFV-GHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCK  162 (340)
T ss_dssp             CSSCEEEEEECTTSSEEEEEETTSEEE-EEETTTTEEEEEEE-CCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEE
T ss_pred             CCCCEEEEEECCCCCEEEEEcccccce-EEeecccceeeeec-CCCCceeEEEEeecCccceeecCCCeEEEEEeCCCce
Confidence            999999999998   799999999999 99999999988888 8999999999999999999999887     21     


Q ss_pred             --ccccCCcceEEEeecCCCe----EEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCC
Q 006825          405 --SSEKGGRRSSSATDDSQDV----SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDC  478 (630)
Q Consensus       405 --~s~~gh~~~Vsa~~~s~d~----l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~Dg  478 (630)
                        ....+|...+..+.+..+.    +++++.|++|++|+....+     ++..+.+|.+.|++|+|+|++++|++|+.|+
T Consensus       163 ~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~-----~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg  237 (340)
T 4aow_A          163 YTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCK-----LKTNHIGHTGYLNTVTVSPDGSLCASGGKDG  237 (340)
T ss_dssp             EEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTE-----EEEEECCCSSCEEEEEECTTSSEEEEEETTC
T ss_pred             EEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCc-----eeeEecCCCCcEEEEEECCCCCEEEEEeCCC
Confidence              2267788888888877653    7899999999999998764     4678899999999999999999999999999


Q ss_pred             cEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeCC-C
Q 006825          479 VIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALS-D  557 (630)
Q Consensus       479 tIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdls-g  557 (630)
                      +|+|||+.+.+.+..+     . +...+..+.|+|++.++ +++.|+.|++|+.....              .++.+. .
T Consensus       238 ~i~iwd~~~~~~~~~~-----~-~~~~v~~~~~~~~~~~~-~~~~d~~i~iwd~~~~~--------------~~~~~~~~  296 (340)
T 4aow_A          238 QAMLWDLNEGKHLYTL-----D-GGDIINALCFSPNRYWL-CAATGPSIKIWDLEGKI--------------IVDELKQE  296 (340)
T ss_dssp             EEEEEETTTTEEEEEE-----E-CSSCEEEEEECSSSSEE-EEEETTEEEEEETTTTE--------------EEEEECCC
T ss_pred             eEEEEEeccCceeeee-----c-CCceEEeeecCCCCcee-eccCCCEEEEEECCCCe--------------EEEecccc
Confidence            9999999998887764     2 34678999999988765 55578999555433211              111111 1


Q ss_pred             CceEEeccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCCCc
Q 006825          558 KPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKT  599 (630)
Q Consensus       558 k~l~tL~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg~  599 (630)
                      .....+.+|...|++|+|+|+ ++|++|+.||+|+|||+.+|+
T Consensus       297 ~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tGt  339 (340)
T 4aow_A          297 VISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGT  339 (340)
T ss_dssp             -------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC--
T ss_pred             ceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCcC
Confidence            122345689999999999999 999999999999999999986

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.3e-31  Score=312.41  Aligned_cols=309  Identities=12%  Similarity=0.021  Sum_probs=226.8

Q ss_pred             ceeecCCCCcccCCCccccccCCCCCcccccccEEEEECCCCcEE--------------------------------EEe
Q 006825          260 SMSINGNGNYIGNSGEVVEDFDGNGTAGVAEQGCLIKNLDNGKEF--------------------------------VVN  307 (630)
Q Consensus       260 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~LddG~~~--------------------------------~v~  307 (630)
                      ++.++|+|++|              +++..++.++||+++.++..                                .+.
T Consensus       103 ~v~~sp~g~~l--------------~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~  168 (902)
T 2oaj_A          103 SIDTDASLDWM--------------LIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVL  168 (902)
T ss_dssp             EEECCTTCSEE--------------EEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEE
T ss_pred             EEEECCCCCEE--------------EEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEE
Confidence            37999999999              56667888999999877531                                111


Q ss_pred             eecCCCceeEEEEcCCCceEeeecceeee------------------cCccceeEEEeec---ceEeecCCCccEecccC
Q 006825          308 EIQEDGTWKKVKEVGTGRQLTIEEFEMCV------------------GHSPIVQELMRRQ---NVEEGNKDSFDLNNNGS  366 (630)
Q Consensus       308 e~~~dg~~~~l~dv~TG~~lt~eef~~l~------------------GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~  366 (630)
                      ....||. . +||+.+++++     .++.                  +|...|.+++|+|   .||+|+.|++++ +||+
T Consensus       169 ~g~~dg~-v-lWd~~~~~~~-----~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~-lWd~  240 (902)
T 2oaj_A          169 ISYEYVT-L-TYSLVENEIK-----QSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLV-FWDA  240 (902)
T ss_dssp             EECSSCE-E-EEETTTTEEE-----EEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEE-EEET
T ss_pred             EEeCCCc-E-EEECCCCceE-----EEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEE-EEEC
Confidence            1234554 4 9999999887     3443                  3478899999999   799999999999 9999


Q ss_pred             CCCceeEEecC----C-------------ccCCEEEEEEc----CCC-CeEEeecCCCCC----------c---------
Q 006825          367 SGGGMKSKKKG----S-------------WFKSIRTVASS----VTG-HKERRSSDERDT----------S---------  405 (630)
Q Consensus       367 ~tG~~~~~lk~----g-------------H~~~V~sVAfS----pdG-~~lasgS~D~dt----------~---------  405 (630)
                      .+|+++.....    +             |...|.+|+|+    |++ .++++|+.+...          .         
T Consensus       241 ~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s  320 (902)
T 2oaj_A          241 NSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITS  320 (902)
T ss_dssp             TTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCC
T ss_pred             CCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccc
Confidence            99988764221    2             45579999995    443 467777544100          0         


Q ss_pred             -------------c--------------------------------------------------------------c---
Q 006825          406 -------------S--------------------------------------------------------------E---  407 (630)
Q Consensus       406 -------------s--------------------------------------------------------------~---  407 (630)
                                   .                                                              +   
T Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~  400 (902)
T 2oaj_A          321 YEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWL  400 (902)
T ss_dssp             HHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTB
T ss_pred             hhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCccccc
Confidence                         0                                                              0   


Q ss_pred             -------------------------------cCCcceEEEeecCCCe--EEEecCCcEEEEEeCCCCcccceeee-eEec
Q 006825          408 -------------------------------KGGRRSSSATDDSQDV--SFHGQERVRVRQYGKSCKDLTALYKC-QEIQ  453 (630)
Q Consensus       408 -------------------------------~gh~~~Vsa~~~s~d~--l~Sgs~Dg~VriWd~~~~el~~~~~v-~tL~  453 (630)
                                                     .||...+..++|++++  +++|+.|++||+||+.++++...... ..+.
T Consensus       401 ~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~  480 (902)
T 2oaj_A          401 RPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLS  480 (902)
T ss_dssp             TTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHH
T ss_pred             CCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCceEEeech
Confidence                                           0111111223445666  89999999999999988754321111 1122


Q ss_pred             -----ccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeee-----------------------------------
Q 006825          454 -----AHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGE-----------------------------------  493 (630)
Q Consensus       454 -----gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~-----------------------------------  493 (630)
                           +|...|++|+|+|||++||+|+.|++|+||++.+++....                                   
T Consensus       481 ~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  560 (902)
T 2oaj_A          481 RTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTG  560 (902)
T ss_dssp             HHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTT
T ss_pred             hhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCC
Confidence                 8999999999999999999999999999999987631000                                   


Q ss_pred             -----eecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeCCCCce-E-----E
Q 006825          494 -----LLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPI-C-----S  562 (630)
Q Consensus       494 -----l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l-~-----t  562 (630)
                           .....+.+|...|.+++|+|+| +||+|+.|++|                       ++|++.+..+ .     .
T Consensus       561 ~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv-----------------------~lwd~~~~~~~~~~~~~~  616 (902)
T 2oaj_A          561 VRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYAAGSL-----------------------MLIDRRGPAIIYMENIRE  616 (902)
T ss_dssp             CSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEETTSEE-----------------------EEEETTTTEEEEEEEGGG
T ss_pred             CCCccceeEEEEcCCCcEEEEEecCCc-EEEEEeCCCcE-----------------------EEEECCCCeEEEEeehhH
Confidence                 0012247899999999999999 99999999999                       7777744332 2     2


Q ss_pred             ec-cCCCCEEEEEEc-----CC----CeEEEEECCCcEEEEeC---CCCcEEEEEe-c-----CCceEEEE
Q 006825          563 FQ-GHLDDVLDLSWS-----KS----QHLLSSSMDKTVRLWHL---SSKTCLKIFS-H-----SDYDISLV  614 (630)
Q Consensus       563 L~-GHs~~V~sLafS-----Pd----~~LaSgS~DgtVrIWDl---~tg~~l~t~~-H-----~~~V~sVa  614 (630)
                      +. +|...|++|+|+     ||    .+|++|+.|++|++||+   .+|+++.+|. |     .+.|..++
T Consensus       617 ~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~~p~~~g~~~~~~~~~~~~~~~~~v~~i~  687 (902)
T 2oaj_A          617 ISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKILPASGGKFDVQLMDITNVTSKGPIHKID  687 (902)
T ss_dssp             TCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEEEECGGGCEEEEEEEEEECCSSCCCCEEE
T ss_pred             hccccccceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEEecCCCCcEEEEecCceecCCCCceEEEE
Confidence            43 999999999999     76    59999999999999999   8899998886 4     47777776

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=6.3e-31  Score=269.37  Aligned_cols=239  Identities=16%  Similarity=0.160  Sum_probs=190.8

Q ss_pred             ceeecCCCCcccCCCccccccCCCCCcccccccEEEEECCCCcEEEEeeecCCCceeEEEEcCCCceEeeecceeeecCc
Q 006825          260 SMSINGNGNYIGNSGEVVEDFDGNGTAGVAEQGCLIKNLDNGKEFVVNEIQEDGTWKKVKEVGTGRQLTIEEFEMCVGHS  339 (630)
Q Consensus       260 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~LddG~~~~v~e~~~dg~~~~l~dv~TG~~lt~eef~~l~GHs  339 (630)
                      ++++||||++|              +++..|+.++||+++.+                     +++.+     .++.||.
T Consensus        14 ~~~~s~~g~~l--------------as~s~D~~v~iw~~~~~---------------------~~~~~-----~~l~gH~   53 (297)
T 2pm7_B           14 DAVMDYYGKRM--------------ATCSSDKTIKIFEVEGE---------------------THKLI-----DTLTGHE   53 (297)
T ss_dssp             EEEECTTSSEE--------------EEEETTSCEEEEEBCSS---------------------CBCCC-----EEECCCS
T ss_pred             EEEECCCCCEE--------------EEEeCCCEEEEEecCCC---------------------CcEEE-----EEEcccc
Confidence            37888999888              55566777888877432                     12333     6788999


Q ss_pred             cceeEEEeec-----ceEeecCCCccEecccCCCCc--eeEEecCCccCCEEEEEEcCC--CCeEEeecCCCCCccccCC
Q 006825          340 PIVQELMRRQ-----NVEEGNKDSFDLNNNGSSGGG--MKSKKKGSWFKSIRTVASSVT--GHKERRSSDERDTSSEKGG  410 (630)
Q Consensus       340 ~~V~~Lafs~-----~laSgS~D~tvr~vWD~~tG~--~~~~lk~gH~~~V~sVAfSpd--G~~lasgS~D~dt~s~~gh  410 (630)
                      ..|.+|+|++     .|+|||.|++|+ +||+.+++  .+.++. +|...|++|+|+|+  |.++               
T Consensus        54 ~~V~~v~~s~~~~g~~l~s~s~D~~v~-iWd~~~~~~~~~~~~~-~h~~~v~~v~~~p~~~g~~l---------------  116 (297)
T 2pm7_B           54 GPVWRVDWAHPKFGTILASCSYDGKVM-IWKEENGRWSQIAVHA-VHSASVNSVQWAPHEYGPML---------------  116 (297)
T ss_dssp             SCEEEEEECCGGGCSEEEEEETTTEEE-EEEBSSSCBCCCEEEC-CCSSCEEEEEECCGGGCSEE---------------
T ss_pred             CCeEEEEecCCCcCCEEEEEcCCCEEE-EEEcCCCceEEEEEee-cCCCceeEEEeCcCCCCcEE---------------
Confidence            9999999964     699999999999 99999885  566777 89999999999997  5555               


Q ss_pred             cceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccC-------------CCEEEEEeCC
Q 006825          411 RRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLD-------------GRYLASAGED  477 (630)
Q Consensus       411 ~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpD-------------G~~LASgS~D  477 (630)
                                    ++++.|++|++|++......   ....+.+|...|.+++|+|+             +++||+|+.|
T Consensus       117 --------------~s~s~d~~v~~wd~~~~~~~---~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D  179 (297)
T 2pm7_B          117 --------------LVASSDGKVSVVEFKENGTT---SPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGAD  179 (297)
T ss_dssp             --------------EEEETTSEEEEEEBCSSSCB---CCEEEECCSSCEEEEEECCCC------------CCEEEEEETT
T ss_pred             --------------EEEECCCcEEEEEecCCCce---eeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCC
Confidence                          56677889999998765321   23568899999999999997             5799999999


Q ss_pred             CcEEEEECcCCceeeeeecccccCcccceEEEEECCCC---CEEEEeeCCCeeeeecccccccccccccCccccccEEEe
Q 006825          478 CVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEP---TSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFA  554 (630)
Q Consensus       478 gtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg---~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwd  554 (630)
                      ++|+|||+.++.....+. ..+.+|...|.+++|+|++   .+|++++.|++|                       ++|+
T Consensus       180 ~~v~lwd~~~~~~~~~~~-~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v-----------------------~iWd  235 (297)
T 2pm7_B          180 NLVKIWKYNSDAQTYVLE-STLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTC-----------------------IIWT  235 (297)
T ss_dssp             SCEEEEEEETTTTEEEEE-EEECCCSSCEEEEEECCCCSSSEEEEEEETTSCE-----------------------EEEE
T ss_pred             CcEEEEEEcCCCceEEEE-EEecCCCCceEEEEECCCCCCceEEEEEECCCcE-----------------------EEEE
Confidence            999999998766322111 1247999999999999994   899999999999                       5666


Q ss_pred             CCC-C--c-eEEe--ccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeCC
Q 006825          555 LSD-K--P-ICSF--QGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLS  596 (630)
Q Consensus       555 lsg-k--~-l~tL--~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~  596 (630)
                      +.. .  . ...+  .+|...|.+++|+|+ .+|++++.|++|+||+..
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~  284 (297)
T 2pm7_B          236 QDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN  284 (297)
T ss_dssp             ESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred             eCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEEC
Confidence            522 1  1 1233  578899999999999 999999999999999986

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=99.98  E-value=9.7e-31  Score=310.16  Aligned_cols=348  Identities=7%  Similarity=-0.041  Sum_probs=241.4

Q ss_pred             eeecCCCCcccCCCccccccCCCCCcccccccEEEEECCCCcEEEEe-------------------eecCCCceeEEEEc
Q 006825          261 MSINGNGNYIGNSGEVVEDFDGNGTAGVAEQGCLIKNLDNGKEFVVN-------------------EIQEDGTWKKVKEV  321 (630)
Q Consensus       261 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~LddG~~~~v~-------------------e~~~dg~~~~l~dv  321 (630)
                      |.|+| |++|              +++..++.++||++++|+.+...                   ....||. .++||+
T Consensus        64 l~fsp-g~~L--------------~S~s~D~~v~lWd~~~~~~~~~~~~~~~V~~v~~sp~g~~l~sgs~dg~-V~lwd~  127 (902)
T 2oaj_A           64 MRFVK-GIYL--------------VVINAKDTVYVLSLYSQKVLTTVFVPGKITSIDTDASLDWMLIGLQNGS-MIVYDI  127 (902)
T ss_dssp             EEEET-TTEE--------------EEEETTCEEEEEETTTCSEEEEEECSSCEEEEECCTTCSEEEEEETTSC-EEEEET
T ss_pred             EEEcC-CCEE--------------EEEECcCeEEEEECCCCcEEEEEcCCCCEEEEEECCCCCEEEEEcCCCc-EEEEEC
Confidence            79999 8888              55567789999999888754221                   1123444 679999


Q ss_pred             CCCceEeeec--c----eeeecCccceeEEEeec----ceEeecCCCccEecccCCCCceeEEecCCc------------
Q 006825          322 GTGRQLTIEE--F----EMCVGHSPIVQELMRRQ----NVEEGNKDSFDLNNNGSSGGGMKSKKKGSW------------  379 (630)
Q Consensus       322 ~TG~~lt~ee--f----~~l~GHs~~V~~Lafs~----~laSgS~D~tvr~vWD~~tG~~~~~lk~gH------------  379 (630)
                      .+++...+.-  +    ..+.+|...|.+|+|+|    .+++|+.|+++  +||+.+++.+.++. +|            
T Consensus       128 ~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v--lWd~~~~~~~~~~~-~~~~~g~~~~~~~~  204 (902)
T 2oaj_A          128 DRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL--TYSLVENEIKQSFI-YELPPFAPGGDFSE  204 (902)
T ss_dssp             TTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE--EEETTTTEEEEEEC-CCBCTTCCCSTTCC
T ss_pred             CCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE--EEECCCCceEEEEe-cccCCcCCCccccc
Confidence            9988652210  1    35689999999999998    68999999987  99999999998887 55            


Q ss_pred             ------cCCEEEEEEcCCCCeEEeecCCC-----C--Ccc------c---cC-------------CcceEEEeec----C
Q 006825          380 ------FKSIRTVASSVTGHKERRSSDER-----D--TSS------E---KG-------------GRRSSSATDD----S  420 (630)
Q Consensus       380 ------~~~V~sVAfSpdG~~lasgS~D~-----d--t~s------~---~g-------------h~~~Vsa~~~----s  420 (630)
                            ...|.+|+|+|+|+++++++.|+     +  ++.      +   .+             |...|.+++|    .
T Consensus       205 ~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~  284 (902)
T 2oaj_A          205 KTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENN  284 (902)
T ss_dssp             CTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSS
T ss_pred             ccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCC
Confidence                  67899999999999999999987     1  111      1   11             2335666666    2


Q ss_pred             CCe---EEEecC--------------------------------------------------------------------
Q 006825          421 QDV---SFHGQE--------------------------------------------------------------------  429 (630)
Q Consensus       421 ~d~---l~Sgs~--------------------------------------------------------------------  429 (630)
                      ++.   +++|+.                                                                    
T Consensus       285 pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~  364 (902)
T 2oaj_A          285 PEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNP  364 (902)
T ss_dssp             TTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSC
T ss_pred             CCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCc
Confidence            321   444433                                                                    


Q ss_pred             --------CcEEEEEeCCCCcccce------------------------------------eeeeEecccCcCEEEEEEc
Q 006825          430 --------RVRVRQYGKSCKDLTAL------------------------------------YKCQEIQAHNGSIWSIKFS  465 (630)
Q Consensus       430 --------Dg~VriWd~~~~el~~~------------------------------------~~v~tL~gHt~~V~sVaFS  465 (630)
                              |+.|++|++.++.....                                    .....|.||...|..++|+
T Consensus       365 ~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~s  444 (902)
T 2oaj_A          365 GLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPA  444 (902)
T ss_dssp             SEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCC
T ss_pred             eeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCccccc
Confidence                    34455555432210000                                    0011245566666667778


Q ss_pred             cCCCEEEEEeCCCcEEEEECcCCceee-eeeccc-----ccCcccceEEEEECCCCCEEEEeeCCCeeeeeccccccccc
Q 006825          466 LDGRYLASAGEDCVIHVWQVVESERKG-ELLEKQ-----EDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRK  539 (630)
Q Consensus       466 pDG~~LASgS~DgtIrVWDl~tg~~~~-~l~~~~-----~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~  539 (630)
                      |+|++||||+.|++||+||+.++.... ..+...     ..+|...|.+++|+|++++||+++.|++|++|+........
T Consensus       445 pdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~  524 (902)
T 2oaj_A          445 EYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYS  524 (902)
T ss_dssp             SEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC--
T ss_pred             ccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccC
Confidence            999999999999999999998874221 000000     12888999999999999999999999999999876532100


Q ss_pred             ----------ccccCc--c-ccccEEEeC----------CCCceEEeccCCCCEEEEEEcCCCeEEEEECCCcEEEEeCC
Q 006825          540 ----------SLSLDH--M-VVPETVFAL----------SDKPICSFQGHLDDVLDLSWSKSQHLLSSSMDKTVRLWHLS  596 (630)
Q Consensus       540 ----------s~s~d~--~-i~~~~Vwdl----------sgk~l~tL~GHs~~V~sLafSPd~~LaSgS~DgtVrIWDl~  596 (630)
                                ......  . ..+.....+          ..+++.++.+|.+.|++|+|+|+++||+|+.|++|+|||+.
T Consensus       525 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG~lAsgs~D~tv~lwd~~  604 (902)
T 2oaj_A          525 VENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIGFVGIAYAAGSLMLIDRR  604 (902)
T ss_dssp             -------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTSEEEEEETTSEEEEEETT
T ss_pred             ccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCcEEEEEeCCCcEEEEECC
Confidence                      000000  0 000000010          01457889999999999999999999999999999999999


Q ss_pred             CCcEEEE-----E--ecCCceEEEE-c-----CCC---cEEEEecce
Q 006825          597 SKTCLKI-----F--SHSDYDISLV-D-----RLM---LRFAYGAFL  627 (630)
Q Consensus       597 tg~~l~t-----~--~H~~~V~sVa-s-----~~~---~~lAsgs~~  627 (630)
                      ++..+..     +  .|...|++|+ +     +++   .++++++.+
T Consensus       605 ~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D  651 (902)
T 2oaj_A          605 GPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDM  651 (902)
T ss_dssp             TTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETT
T ss_pred             CCeEEEEeehhHhccccccceEEEEEEEEecCCCCCcceEEEEEecC
Confidence            8877652     2  3889999999 7     775   788888754

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=99.98  E-value=2.8e-31  Score=279.42  Aligned_cols=257  Identities=9%  Similarity=0.032  Sum_probs=217.5

Q ss_pred             ecCccceeEEEeec---ceEeecCCCccEecccCCC----CceeEEecCCccCCEEEEEEcCC-CCeEEeecCCC-----
Q 006825          336 VGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSG----GGMKSKKKGSWFKSIRTVASSVT-GHKERRSSDER-----  402 (630)
Q Consensus       336 ~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~t----G~~~~~lk~gH~~~V~sVAfSpd-G~~lasgS~D~-----  402 (630)
                      .+|...|.+++|+|   .|++|+.|++++ +||+.+    .+.+.++. +|...|.+++|+|+ ++++++++.|+     
T Consensus        64 ~~~~~~v~~~~~s~~~~~l~~~~~dg~v~-vw~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iw  141 (416)
T 2pm9_A           64 LQVDSKFNDLDWSHNNKIIAGALDNGSLE-LYSTNEANNAINSMARFS-NHSSSVKTVKFNAKQDNVLASGGNNGEIFIW  141 (416)
T ss_dssp             CCCSSCEEEEEECSSSSCEEEEESSSCEE-EECCSSTTSCCCEEEECC-CSSSCCCEEEECSSSTTBEEEECSSSCEEBC
T ss_pred             EecCCceEEEEECCCCCeEEEEccCCeEE-Eeecccccccccchhhcc-CCccceEEEEEcCCCCCEEEEEcCCCeEEEE
Confidence            46889999999998   799999999999 999988    34777777 99999999999998 89999999887     


Q ss_pred             C--Ccc-------------ccCCcceEEEeecCCCe---EEEecCCcEEEEEeCCCCcccceeeeeEeccc------CcC
Q 006825          403 D--TSS-------------EKGGRRSSSATDDSQDV---SFHGQERVRVRQYGKSCKDLTALYKCQEIQAH------NGS  458 (630)
Q Consensus       403 d--t~s-------------~~gh~~~Vsa~~~s~d~---l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gH------t~~  458 (630)
                      +  +..             ..+|...|.++.+++++   +++++.|+.|++||+..++     .+..+..|      ...
T Consensus       142 d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~-----~~~~~~~~~~~~~~~~~  216 (416)
T 2pm9_A          142 DMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKK-----EVIHLSYTSPNSGIKQQ  216 (416)
T ss_dssp             BTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTE-----EEEEECCCCCSSCCCCC
T ss_pred             ECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCC-----cceEEeccccccccCCc
Confidence            1  111             25788899999999872   8999999999999998764     35556655      889


Q ss_pred             EEEEEEccCC-CEEEEEeCCC---cEEEEECcCCc-eeeeeeccccc-CcccceEEEEECC-CCCEEEEeeCCCeeeeec
Q 006825          459 IWSIKFSLDG-RYLASAGEDC---VIHVWQVVESE-RKGELLEKQED-GHLNMLLLANGSP-EPTSLSPKHLDNHLEKKR  531 (630)
Q Consensus       459 V~sVaFSpDG-~~LASgS~Dg---tIrVWDl~tg~-~~~~l~~~~~~-gh~~~V~svafSp-dg~~lasgs~Dg~I~i~~  531 (630)
                      |.+++|+|++ .+|++++.|+   +|++||+.++. ....     +. +|...|.+++|+| ++.+|++++.|+.|    
T Consensus       217 v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~-----~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v----  287 (416)
T 2pm9_A          217 LSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQT-----LNQGHQKGILSLDWCHQDEHLLLSSGRDNTV----  287 (416)
T ss_dssp             EEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBC-----CCSCCSSCEEEEEECSSCSSCEEEEESSSEE----
T ss_pred             eEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEE-----eecCccCceeEEEeCCCCCCeEEEEeCCCCE----
Confidence            9999999997 6999999999   99999999864 3443     35 8999999999999 89999999999999    


Q ss_pred             ccccccccccccCccccccEEEeC-CCCceEEeccCCCCEEEEEEcCC--CeEEEEECCCcEEEEeCCCCcEEEE-----
Q 006825          532 RGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSWSKS--QHLLSSSMDKTVRLWHLSSKTCLKI-----  603 (630)
Q Consensus       532 ~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL~GHs~~V~sLafSPd--~~LaSgS~DgtVrIWDl~tg~~l~t-----  603 (630)
                                         ++|++ +++++.++.+|...|++++|+|+  .+|++++.|++|+|||+.++.....     
T Consensus       288 -------------------~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~  348 (416)
T 2pm9_A          288 -------------------LLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETE  348 (416)
T ss_dssp             -------------------EEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC----
T ss_pred             -------------------EEeeCCCCccceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCccccccc
Confidence                               88887 78899999999999999999998  6999999999999999987653211     


Q ss_pred             ----------E--------------------e-cCCceEEEE-cCCCcEEEEecce
Q 006825          604 ----------F--------------------S-HSDYDISLV-DRLMLRFAYGAFL  627 (630)
Q Consensus       604 ----------~--------------------~-H~~~V~sVa-s~~~~~lAsgs~~  627 (630)
                                +                    . |...|++++ ++++.++++++.+
T Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~d  404 (416)
T 2pm9_A          349 TKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKLVQITPDG  404 (416)
T ss_dssp             ------------------CCSCCCSSCCCCCSTTCCCSCCCEEETTTEEECBCTTS
T ss_pred             ccccCCcccccccccccccccccccccccCCccccCCccceEEeeCCeEEEEeCCC
Confidence                      1                    1 466777778 8999999988754

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=99.98  E-value=6e-30  Score=262.79  Aligned_cols=260  Identities=16%  Similarity=0.067  Sum_probs=211.9

Q ss_pred             eEEEEcCCCceEeeecceeeecCccceeEEEeec---ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCC
Q 006825          316 KKVKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTG  392 (630)
Q Consensus       316 ~~l~dv~TG~~lt~eef~~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG  392 (630)
                      .++|++.+++.+     .++.+|...|.+++|+|   .|++++.|++++ +||+.+++.+..+.  |...|.+++|+|+|
T Consensus        56 i~vwd~~~~~~~-----~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~-iwd~~~~~~~~~~~--~~~~v~~~~~~~~~  127 (369)
T 3zwl_B           56 ASVWYSLNGERL-----GTLDGHTGTIWSIDVDCFTKYCVTGSADYSIK-LWDVSNGQCVATWK--SPVPVKRVEFSPCG  127 (369)
T ss_dssp             EEEEETTTCCEE-----EEECCCSSCEEEEEECTTSSEEEEEETTTEEE-EEETTTCCEEEEEE--CSSCEEEEEECTTS
T ss_pred             EEEEeCCCchhh-----hhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEE-EEECCCCcEEEEee--cCCCeEEEEEccCC
Confidence            446666666666     67789999999999998   799999999999 99999999998887  88899999999999


Q ss_pred             CeEEeecCC-----C-----C-----------------CccccCCcc--eEEEeecCCCe--EEEecCCcEEEEEeCCCC
Q 006825          393 HKERRSSDE-----R-----D-----------------TSSEKGGRR--SSSATDDSQDV--SFHGQERVRVRQYGKSCK  441 (630)
Q Consensus       393 ~~lasgS~D-----~-----d-----------------t~s~~gh~~--~Vsa~~~s~d~--l~Sgs~Dg~VriWd~~~~  441 (630)
                      +++++++.+     +     +                 ......|..  .+.++.+++++  +++++.|+.|++||+...
T Consensus       128 ~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  207 (369)
T 3zwl_B          128 NYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNN  207 (369)
T ss_dssp             SEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTT
T ss_pred             CEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCC
Confidence            999998877     3     0                 011334444  88899998887  899999999999999763


Q ss_pred             cccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEe
Q 006825          442 DLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPK  521 (630)
Q Consensus       442 el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasg  521 (630)
                      .    ..+..+.+|...|.+++|+|++++|++++.|+.|++||+.+++.+..+      .+...+..++|+|++.+++++
T Consensus       208 ~----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~------~~~~~~~~~~~~~~~~~l~~~  277 (369)
T 3zwl_B          208 Y----EYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKY------ETDCPLNTAVITPLKEFIILG  277 (369)
T ss_dssp             T----EEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE------ECSSCEEEEEECSSSSEEEEE
T ss_pred             c----EeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeee------cCCCCceeEEecCCCceEEEe
Confidence            1    256788999999999999999999999999999999999998887774      266789999999999999999


Q ss_pred             eCCCeeeeecccccccccccccCccccccEEEeC-CCCceEEeccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCCCc
Q 006825          522 HLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKT  599 (630)
Q Consensus       522 s~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg~  599 (630)
                      +.++.+.++.......      ...+   .+|+. +++++..+.+|...|++++|+|+ ++|++++.|++|+||++..+.
T Consensus       278 ~~~~~~~~~~~~~~~~------~~~i---~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~  348 (369)
T 3zwl_B          278 GGQEAKDVTTTSANEG------KFEA---RFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYASGGEDGFIRLHHFEKSY  348 (369)
T ss_dssp             ECCC-------------------CEE---EEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEEECHHH
T ss_pred             ecCCCceEEEEecCCC------ccee---EEEecCCCcchhheecccCcEEEEEECCCCCEEEEEcCCCeEEEEECcccc
Confidence            9888654433221100      0011   88998 78999999999999999999999 999999999999999998765


Q ss_pred             EEE
Q 006825          600 CLK  602 (630)
Q Consensus       600 ~l~  602 (630)
                      ...
T Consensus       349 ~~~  351 (369)
T 3zwl_B          349 FDF  351 (369)
T ss_dssp             HTC
T ss_pred             chh
Confidence            433

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=99.98  E-value=2.8e-30  Score=295.09  Aligned_cols=278  Identities=18%  Similarity=0.174  Sum_probs=208.1

Q ss_pred             CCCcEEEEeeecCCCceeEEEEcCCCceEeeecceeeecCccceeEEEeec---ceEeecCCCccEecccCCCCceeEEe
Q 006825          299 DNGKEFVVNEIQEDGTWKKVKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKK  375 (630)
Q Consensus       299 ddG~~~~v~e~~~dg~~~~l~dv~TG~~lt~eef~~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~l  375 (630)
                      ++++.++...  .||. .++|++.++..........+.||...|.+++|+|   .|++|+.|++|+ +||+.++..++++
T Consensus       393 ~~~~~l~s~s--~D~~-i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~-vwd~~~~~~~~~~  468 (694)
T 3dm0_A          393 DNADIIVSAS--RDKS-IILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELR-LWDLAAGVSTRRF  468 (694)
T ss_dssp             TCCSEEEEEE--TTSE-EEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEE-EEETTTTEEEEEE
T ss_pred             CCCCEEEEEe--CCCc-EEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEE-EEECCCCcceeEE
Confidence            4444444433  3554 6788887654332223367899999999999998   799999999999 9999999999999


Q ss_pred             cCCccCCEEEEEEcCCCCeEEeecCCC-----CCc---------cccCCcceEEEeecCCCe----EEEecCCcEEEEEe
Q 006825          376 KGSWFKSIRTVASSVTGHKERRSSDER-----DTS---------SEKGGRRSSSATDDSQDV----SFHGQERVRVRQYG  437 (630)
Q Consensus       376 k~gH~~~V~sVAfSpdG~~lasgS~D~-----dt~---------s~~gh~~~Vsa~~~s~d~----l~Sgs~Dg~VriWd  437 (630)
                      . +|...|.+|+|+|+|+++++++.|+     +..         ...+|...|.++.++++.    +++++.|++|++||
T Consensus       469 ~-~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd  547 (694)
T 3dm0_A          469 V-GHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWN  547 (694)
T ss_dssp             E-CCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEE
T ss_pred             e-CCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEE
Confidence            8 9999999999999999999999997     211         135788999999998864    89999999999999


Q ss_pred             CCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCE
Q 006825          438 KSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTS  517 (630)
Q Consensus       438 ~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~  517 (630)
                      +...+     +..++.+|.+.|++|+|+|+|++|+||+.|++|+|||+.+++.+..+      .+...|.+++|+|++.+
T Consensus       548 ~~~~~-----~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~------~~~~~v~~~~~sp~~~~  616 (694)
T 3dm0_A          548 LSNCK-----LRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSL------EANSVIHALCFSPNRYW  616 (694)
T ss_dssp             TTTCC-----EEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECC------BCSSCEEEEEECSSSSE
T ss_pred             CCCCc-----EEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEe------cCCCcEEEEEEcCCCcE
Confidence            97664     46789999999999999999999999999999999999999877663      23467999999999988


Q ss_pred             EEEeeCCCeeeeecccccccccccccCccccccEEEeCCCCceEEeccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeCC
Q 006825          518 LSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLS  596 (630)
Q Consensus       518 lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~  596 (630)
                      ++++. ++.|++|+.........+..+....   ..............|.-.|++++|+|+ .+|++|+.||+|+||++.
T Consensus       617 l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~  692 (694)
T 3dm0_A          617 LCAAT-EHGIKIWDLESKSIVEDLKVDLKAE---AEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIG  692 (694)
T ss_dssp             EEEEE-TTEEEEEETTTTEEEEEECCCCC-------------------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred             EEEEc-CCCEEEEECCCCCChhhhccccccc---cccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEecc
Confidence            87764 5568555543322111111100000   000000000001122335889999999 999999999999999985

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=99.98  E-value=9.2e-30  Score=274.07  Aligned_cols=260  Identities=16%  Similarity=0.115  Sum_probs=225.5

Q ss_pred             CCceeEEEEcCCCceEeeecceeeecCccceeEEEeec--ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEc
Q 006825          312 DGTWKKVKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQ--NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASS  389 (630)
Q Consensus       312 dg~~~~l~dv~TG~~lt~eef~~l~GHs~~V~~Lafs~--~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfS  389 (630)
                      ||. .++|++.+++.+     ..+.||...|.+++|.|  .+++|+.|++++ +||+.+++.+.++. +|...|.+++|+
T Consensus       141 dg~-i~vwd~~~~~~~-----~~~~~h~~~V~~l~~~~~~~l~s~s~dg~i~-vwd~~~~~~~~~~~-~h~~~v~~l~~~  212 (464)
T 3v7d_B          141 DKM-IRVYDSINKKFL-----LQLSGHDGGVWALKYAHGGILVSGSTDRTVR-VWDIKKGCCTHVFE-GHNSTVRCLDIV  212 (464)
T ss_dssp             TSC-EEEEETTTTEEE-----EEECCCSSCEEEEEECSTTEEEEEETTSCEE-EEETTTTEEEEEEC-CCSSCEEEEEEE
T ss_pred             CCc-EEEEECCCCcEE-----EEEeCCCcCEEEEEEcCCCEEEEEeCCCCEE-EEECCCCcEEEEEC-CCCCccEEEEEe
Confidence            443 567777788777     77889999999999998  799999999999 99999999999998 999999999999


Q ss_pred             --CCCCeEEeecCCC-----C-----------------------------CccccCCcceEEEeecCCCeEEEecCCcEE
Q 006825          390 --VTGHKERRSSDER-----D-----------------------------TSSEKGGRRSSSATDDSQDVSFHGQERVRV  433 (630)
Q Consensus       390 --pdG~~lasgS~D~-----d-----------------------------t~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~V  433 (630)
                        ++++++++++.|+     +                             .....+|...|.++......+++++.|++|
T Consensus       213 ~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i  292 (464)
T 3v7d_B          213 EYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTL  292 (464)
T ss_dssp             ESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEEEEETTEEEEEETTSCE
T ss_pred             cCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEEcCCCCEEEEEeCCCeE
Confidence              5889999999887     1                             112567888888888777779999999999


Q ss_pred             EEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECC
Q 006825          434 RQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSP  513 (630)
Q Consensus       434 riWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSp  513 (630)
                      ++||+.+.+     ++..+.+|...|++++|+|++++|++|+.|++|++||+.+++.+..+     .+|...|.+++++ 
T Consensus       293 ~vwd~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~-----~~h~~~v~~~~~~-  361 (464)
T 3v7d_B          293 IVWDVAQMK-----CLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTL-----QGHTALVGLLRLS-  361 (464)
T ss_dssp             EEEETTTTE-----EEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEE-----CCCSSCEEEEEEC-
T ss_pred             EEEECCCCc-----EEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEE-----eCCCCcEEEEEEc-
Confidence            999997664     57788999999999999999999999999999999999999888774     7899999999997 


Q ss_pred             CCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeC-CCCceEEeccCCCCEEEEEEcCC-CeEEEEECCCcEE
Q 006825          514 EPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVR  591 (630)
Q Consensus       514 dg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL~GHs~~V~sLafSPd-~~LaSgS~DgtVr  591 (630)
                       +.++++++.|+.|                       ++|++ +++....+ .|...+..++|+|+ .+|++|+ |++|+
T Consensus       362 -~~~l~s~s~dg~v-----------------------~vwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~-dg~i~  415 (464)
T 3v7d_B          362 -DKFLVSAAADGSI-----------------------RGWDANDYSRKFSY-HHTNLSAITTFYVSDNILVSGS-ENQFN  415 (464)
T ss_dssp             -SSEEEEEETTSEE-----------------------EEEETTTCCEEEEE-ECTTCCCEEEEEECSSEEEEEE-TTEEE
T ss_pred             -CCEEEEEeCCCcE-----------------------EEEECCCCceeeee-cCCCCccEEEEEeCCCEEEEec-CCeEE
Confidence             5899999999999                       77777 34444443 37777888999999 8888888 99999


Q ss_pred             EEeCCCCcEEEEEe--cCCceEEEE-cC
Q 006825          592 LWHLSSKTCLKIFS--HSDYDISLV-DR  616 (630)
Q Consensus       592 IWDl~tg~~l~t~~--H~~~V~sVa-s~  616 (630)
                      |||+.++++++.+.  |...|++|+ +.
T Consensus       416 iwd~~~g~~~~~~~~~~~~~v~~v~~~~  443 (464)
T 3v7d_B          416 IYNLRSGKLVHANILKDADQIWSVNFKG  443 (464)
T ss_dssp             EEETTTCCEEESCTTTTCSEEEEEEEET
T ss_pred             EEECCCCcEEehhhccCCCcEEEEEecC
Confidence            99999999998743  999999999 53

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=99.98  E-value=2.6e-30  Score=270.83  Aligned_cols=265  Identities=12%  Similarity=0.007  Sum_probs=227.2

Q ss_pred             ceeeecCccceeEEEeec-ceEeecCCCccEecccCCCCc------eeEEecCCccCCEEEEEEcCC----C---CeEEe
Q 006825          332 FEMCVGHSPIVQELMRRQ-NVEEGNKDSFDLNNNGSSGGG------MKSKKKGSWFKSIRTVASSVT----G---HKERR  397 (630)
Q Consensus       332 f~~l~GHs~~V~~Lafs~-~laSgS~D~tvr~vWD~~tG~------~~~~lk~gH~~~V~sVAfSpd----G---~~las  397 (630)
                      ...+.||...|.+|+|.| .|++|+.|++++ +||+.+++      .+..+. +|...|.+++|+|+    |   +++++
T Consensus         9 ~~~~~~h~~~i~~~~~~~~~l~s~~~dg~i~-iw~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~g~~~~~l~s   86 (397)
T 1sq9_A            9 ANAGKAHDADIFSVSACNSFTVSCSGDGYLK-VWDNKLLDNENPKDKSYSHF-VHKSGLHHVDVLQAIERDAFELCLVAT   86 (397)
T ss_dssp             EEESSCSSSCEEEEEECSSEEEEEETTSEEE-EEESBCCTTCCGGGGEEEEE-CCTTCEEEEEEEEEEETTTEEEEEEEE
T ss_pred             hhhhhhhhcCeEEEEecCCeEEEEcCCCEEE-EEECCCcccccCCCcceEEe-cCCCcEEEEEEecccccCCccccEEEE
Confidence            366789999999999999 899999999999 99999998      788888 99999999999999    9   99999


Q ss_pred             ecCCC----------C------CccccCC-----cceEEEeecC----CCe---EEEecCCcEEEEEeCCC------Ccc
Q 006825          398 SSDER----------D------TSSEKGG-----RRSSSATDDS----QDV---SFHGQERVRVRQYGKSC------KDL  443 (630)
Q Consensus       398 gS~D~----------d------t~s~~gh-----~~~Vsa~~~s----~d~---l~Sgs~Dg~VriWd~~~------~el  443 (630)
                      ++.|+          .      .....+|     ...|.++.+.    +++   +++++.|+.|++||+..      .+.
T Consensus        87 ~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  166 (397)
T 1sq9_A           87 TSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLT  166 (397)
T ss_dssp             EETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTT
T ss_pred             EcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccce
Confidence            99887          1      2335667     5889999988    554   78999999999999876      433


Q ss_pred             cceeeeeEe-------cccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccC---c---ccceEEEE
Q 006825          444 TALYKCQEI-------QAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDG---H---LNMLLLAN  510 (630)
Q Consensus       444 ~~~~~v~tL-------~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~g---h---~~~V~sva  510 (630)
                      ........+       ..|...|.+++|+|++ +|++++.|+.|++||+.+++.+..+     ..   |   ...|.+++
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~-----~~~~~h~~~~~~i~~i~  240 (397)
T 1sq9_A          167 LNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNF-----ESQHSMINNSNSIRSVK  240 (397)
T ss_dssp             TCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEE-----ECCC---CCCCCEEEEE
T ss_pred             eeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEE-----eccccccccCCccceEE
Confidence            222222256       4599999999999999 9999999999999999998877774     45   8   89999999


Q ss_pred             ECCCCCEEEEeeCC---CeeeeecccccccccccccCccccccEEEeC-CCCceEEecc-------------CCCCEEEE
Q 006825          511 GSPEPTSLSPKHLD---NHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQG-------------HLDDVLDL  573 (630)
Q Consensus       511 fSpdg~~lasgs~D---g~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL~G-------------Hs~~V~sL  573 (630)
                      |+|++.+|++++.|   +.|                       ++|++ +++++..+.+             |...|.++
T Consensus       241 ~~~~~~~l~~~~~d~~~g~i-----------------------~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  297 (397)
T 1sq9_A          241 FSPQGSLLAIAHDSNSFGCI-----------------------TLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSL  297 (397)
T ss_dssp             ECSSTTEEEEEEEETTEEEE-----------------------EEEETTTCCEEEEECBC--------CCBSBSSCEEEE
T ss_pred             ECCCCCEEEEEecCCCCceE-----------------------EEEECCCCcccceeccCcccccccccccccCCcEEEE
Confidence            99999999999999   888                       78887 7788889988             99999999


Q ss_pred             EEcCC-CeEEEEECCCcEEEEeCCCCcEEEEEe-------c---------------CCceEEEE-cCCC----------c
Q 006825          574 SWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-------H---------------SDYDISLV-DRLM----------L  619 (630)
Q Consensus       574 afSPd-~~LaSgS~DgtVrIWDl~tg~~l~t~~-------H---------------~~~V~sVa-s~~~----------~  619 (630)
                      +|+|+ .+|++++.|++|+|||+.+++++.++.       |               ...|++++ .+++          .
T Consensus       298 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~  377 (397)
T 1sq9_A          298 SFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNE  377 (397)
T ss_dssp             EECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSC
T ss_pred             EECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccc
Confidence            99999 999999999999999999999999987       5               89999999 7776          5


Q ss_pred             EEEEecce
Q 006825          620 RFAYGAFL  627 (630)
Q Consensus       620 ~lAsgs~~  627 (630)
                      .+++++.+
T Consensus       378 ~l~s~~~d  385 (397)
T 1sq9_A          378 SLCCVCLD  385 (397)
T ss_dssp             EEEEEETT
T ss_pred             eEEEecCC
Confidence            77777643

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=99.98  E-value=1.8e-29  Score=271.51  Aligned_cols=266  Identities=20%  Similarity=0.247  Sum_probs=234.6

Q ss_pred             eEEEEcCCCceEeeecceeeecCccceeEEEeec-ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCe
Q 006825          316 KKVKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQ-NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHK  394 (630)
Q Consensus       316 ~~l~dv~TG~~lt~eef~~l~GHs~~V~~Lafs~-~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~  394 (630)
                      .++|+..+|+.+     ..+.||...|.+++|.+ .+++|+.|++++ +||+.+++.+.++. +|...|.+++|+  +++
T Consensus       141 i~vwd~~~~~~~-----~~~~~h~~~v~~~~~~~~~l~s~~~dg~i~-vwd~~~~~~~~~~~-~h~~~v~~~~~~--~~~  211 (445)
T 2ovr_B          141 LKVWSAVTGKCL-----RTLVGHTGGVWSSQMRDNIIISGSTDRTLK-VWNAETGECIHTLY-GHTSTVRCMHLH--EKR  211 (445)
T ss_dssp             EEEEETTTCCEE-----EECCCCSSCEEEEEEETTEEEEEETTSCEE-EEETTTTEEEEEEC-CCSSCEEEEEEE--TTE
T ss_pred             EEEEECCCCcEE-----EEEcCCCCCEEEEEecCCEEEEEeCCCeEE-EEECCcCcEEEEEC-CCCCcEEEEEec--CCE
Confidence            457777777776     77889999999999998 899999999999 99999999999998 999999999995  578


Q ss_pred             EEeecCCC-----C--C----ccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEE
Q 006825          395 ERRSSDER-----D--T----SSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIK  463 (630)
Q Consensus       395 lasgS~D~-----d--t----~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVa  463 (630)
                      +++++.|+     +  +    ....+|...|.++.+....+++++.|+.|++||..+++     ++.++.+|...|.+++
T Consensus       212 l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~~-----~~~~~~~~~~~v~~~~  286 (445)
T 2ovr_B          212 VVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETET-----CLHTLQGHTNRVYSLQ  286 (445)
T ss_dssp             EEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSCEEEEEGGGTE-----EEEEECCCSSCEEEEE
T ss_pred             EEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEECCCEEEEEcCCCEEEEEECCCCc-----EeEEecCCCCceEEEE
Confidence            99999887     2  1    22678999999999976679999999999999987654     5778899999999999


Q ss_pred             EccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeeccccccccccccc
Q 006825          464 FSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSL  543 (630)
Q Consensus       464 FSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~  543 (630)
                      |  ++++|++|+.|++|++||+.+++.+..+     .+|...+.++.+  ++.++++++.|+.|                
T Consensus       287 ~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~-----~~~~~~v~~~~~--~~~~l~~~~~dg~i----------------  341 (445)
T 2ovr_B          287 F--DGIHVVSGSLDTSIRVWDVETGNCIHTL-----TGHQSLTSGMEL--KDNILVSGNADSTV----------------  341 (445)
T ss_dssp             E--CSSEEEEEETTSCEEEEETTTCCEEEEE-----CCCCSCEEEEEE--ETTEEEEEETTSCE----------------
T ss_pred             E--CCCEEEEEeCCCeEEEEECCCCCEEEEE-----cCCcccEEEEEE--eCCEEEEEeCCCeE----------------
Confidence            9  8999999999999999999999888774     788888888877  46799999999999                


Q ss_pred             CccccccEEEeC-CCCceEEecc---CCCCEEEEEEcCCCeEEEEECCCcEEEEeCCCCcEEEEE------ecCCceEEE
Q 006825          544 DHMVVPETVFAL-SDKPICSFQG---HLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIF------SHSDYDISL  613 (630)
Q Consensus       544 d~~i~~~~Vwdl-sgk~l~tL~G---Hs~~V~sLafSPd~~LaSgS~DgtVrIWDl~tg~~l~t~------~H~~~V~sV  613 (630)
                             ++|++ +++++.++.+   |...|++++|++ .+|++|+.||+|+|||+.+++++..+      .|...|+++
T Consensus       342 -------~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~  413 (445)
T 2ovr_B          342 -------KIWDIKTGQCLQTLQGPNKHQSAVTCLQFNK-NFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRI  413 (445)
T ss_dssp             -------EEEETTTCCEEEEECSTTSCSSCEEEEEECS-SEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEE
T ss_pred             -------EEEECCCCcEEEEEccCCCCCCCEEEEEECC-CEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEE
Confidence                   88888 7888889887   889999999975 79999999999999999999999988      388999999


Q ss_pred             E-cCCCcEEEEeccee
Q 006825          614 V-DRLMLRFAYGAFLN  628 (630)
Q Consensus       614 a-s~~~~~lAsgs~~n  628 (630)
                      + ++++..+++++.+.
T Consensus       414 ~~s~~~~~la~~~~dg  429 (445)
T 2ovr_B          414 RASNTKLVCAVGSRNG  429 (445)
T ss_dssp             EECSSEEEEEEECSSS
T ss_pred             EecCCEEEEEEcccCC
Confidence            9 99999999987553

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=99.98  E-value=4.3e-31  Score=275.82  Aligned_cols=288  Identities=16%  Similarity=0.055  Sum_probs=207.3

Q ss_pred             ceeecCCCCcccCCCccccccCCCCCcccccccEEEEECCCCcEEEEeeecCCCceeEEEEcCCCceEeeecceeeecCc
Q 006825          260 SMSINGNGNYIGNSGEVVEDFDGNGTAGVAEQGCLIKNLDNGKEFVVNEIQEDGTWKKVKEVGTGRQLTIEEFEMCVGHS  339 (630)
Q Consensus       260 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~LddG~~~~v~e~~~dg~~~~l~dv~TG~~lt~eef~~l~GHs  339 (630)
                      .++++|||++|              +++..++.++||+++++..                     +.+     .++.+|.
T Consensus        16 ~~~~s~~g~~l--------------~~~~~d~~i~iw~~~~~~~---------------------~~~-----~~~~~h~   55 (377)
T 3dwl_C           16 EHAFNSQRTEF--------------VTTTATNQVELYEQDGNGW---------------------KHA-----RTFSDHD   55 (377)
T ss_dssp             CCEECSSSSEE--------------ECCCSSSCBCEEEEETTEE---------------------EEC-----CCBCCCS
T ss_pred             EEEECCCCCEE--------------EEecCCCEEEEEEccCCce---------------------EEE-----EEEecCC
Confidence            47999999999              3344455666666643310                     222     6678999


Q ss_pred             cceeEEEeec---ceEeecCCCccEecccCCCCc---eeEEecCCccCCEEEEEEcCCCCeEEeecCCC-----C-----
Q 006825          340 PIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGG---MKSKKKGSWFKSIRTVASSVTGHKERRSSDER-----D-----  403 (630)
Q Consensus       340 ~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~---~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~-----d-----  403 (630)
                      ..|.+++|+|   .|++++.|++++ +||+.+++   ....+. +|...|.+++|+|+|+++++++.|+     +     
T Consensus        56 ~~v~~~~~s~~~~~l~s~s~d~~v~-vwd~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~  133 (377)
T 3dwl_C           56 KIVTCVDWAPKSNRIVTCSQDRNAY-VYEKRPDGTWKQTLVLL-RLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQEN  133 (377)
T ss_dssp             SCEEEEEECTTTCCEEEEETTSSEE-EC------CCCCEEECC-CCSSCEEEEECCTTSSCCEEEESSSCEEECCC----
T ss_pred             ceEEEEEEeCCCCEEEEEeCCCeEE-EEEcCCCCceeeeeEec-ccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcc
Confidence            9999999998   799999999999 99999987   666777 8999999999999999999999887     1     


Q ss_pred             ----CccccC-CcceEEEeecCCCe--EEEecCCcEEEEEeCCCCccc-------------ceeeeeEecccCcCEEEEE
Q 006825          404 ----TSSEKG-GRRSSSATDDSQDV--SFHGQERVRVRQYGKSCKDLT-------------ALYKCQEIQAHNGSIWSIK  463 (630)
Q Consensus       404 ----t~s~~g-h~~~Vsa~~~s~d~--l~Sgs~Dg~VriWd~~~~el~-------------~~~~v~tL~gHt~~V~sVa  463 (630)
                          ...+.+ |...|.++++++++  +++++.|++|++||+...++.             ...++..+ +|...|++++
T Consensus       134 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~  212 (377)
T 3dwl_C          134 DWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVG  212 (377)
T ss_dssp             -CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEE
T ss_pred             cceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEE
Confidence                122455 99999999999987  899999999999998643211             12345666 9999999999


Q ss_pred             EccCCCEEEEEeCCCcEEEEECcCCce----eeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeeccccccc-c
Q 006825          464 FSLDGRYLASAGEDCVIHVWQVVESER----KGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSIN-R  538 (630)
Q Consensus       464 FSpDG~~LASgS~DgtIrVWDl~tg~~----~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~-~  538 (630)
                      |+|+|++|++++.|++|+|||+.+++.    +..     +.+|...|.+++|+|++++|++++.++.+.+|....... .
T Consensus       213 ~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-----~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~  287 (377)
T 3dwl_C          213 FSPSGNALAYAGHDSSVTIAYPSAPEQPPRALIT-----VKLSQLPLRSLLWANESAIVAAGYNYSPILLQGNESGWAHT  287 (377)
T ss_dssp             ECTTSSCEEEEETTTEEC-CEECSTTSCEEECCC-----EECSSSCEEEEEEEETTEEEEEESSSSEEEECCCC---CCS
T ss_pred             ECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEe-----ecCCCCceEEEEEcCCCCEEEEEcCCcEEEEEeCCCceEEE
Confidence            999999999999999999999999887    444     478999999999999999999998887774444322111 1


Q ss_pred             cccccCcc----------------ccc-------cEEEe--CCC---CceEEeccCCCCEEEEEEcCC--C---eEEEEE
Q 006825          539 KSLSLDHM----------------VVP-------ETVFA--LSD---KPICSFQGHLDDVLDLSWSKS--Q---HLLSSS  585 (630)
Q Consensus       539 ~s~s~d~~----------------i~~-------~~Vwd--lsg---k~l~tL~GHs~~V~sLafSPd--~---~LaSgS  585 (630)
                      ..+.....                ...       ..+..  ..+   .......+|...|++|++.+.  .   +|+||+
T Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g  367 (377)
T 3dwl_C          288 RDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSG  367 (377)
T ss_dssp             BCCCSCCCCCCBSSSSSBCCCCCC-------------------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEE
T ss_pred             eeecccccccccccccccccccccccccccccccccccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeec
Confidence            11100000                000       00111  111   111123459999999998765  3   699999


Q ss_pred             CCCcEEEEeC
Q 006825          586 MDKTVRLWHL  595 (630)
Q Consensus       586 ~DgtVrIWDl  595 (630)
                      .||+|+|||+
T Consensus       368 ~Dg~i~iWdl  377 (377)
T 3dwl_C          368 TDGRVVLWTL  377 (377)
T ss_dssp             TTSEEEEECC
T ss_pred             CCCcEEEecC
Confidence            9999999986

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=99.98  E-value=1.4e-29  Score=279.69  Aligned_cols=331  Identities=13%  Similarity=0.079  Sum_probs=254.2

Q ss_pred             ceeecC--CCCcccCCCccccccCCCCCcccccccEEEEECCCC------cEEEEeee------------cCCCc-----
Q 006825          260 SMSING--NGNYIGNSGEVVEDFDGNGTAGVAEQGCLIKNLDNG------KEFVVNEI------------QEDGT-----  314 (630)
Q Consensus       260 ~~~~s~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~LddG------~~~~v~e~------------~~dg~-----  314 (630)
                      .|.++|  ||++|              +++..++.++||++++|      ....+...            ..+|.     
T Consensus        69 ~~~~sp~~~~~~l--------------~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~  134 (615)
T 1pgu_A           69 TVKFSPIKGSQYL--------------CSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVV  134 (615)
T ss_dssp             EEEECSSTTCCEE--------------EEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEE
T ss_pred             EEEECcCCCCCEE--------------EEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEe
Confidence            389999  99999              55566778999998755      22221111            11111     


Q ss_pred             ------eeEEEEcCCCceEeeecceeeecCccceeEEEeec----ceEeecCCCccEecccCCCCceeEEecCCccC---
Q 006825          315 ------WKKVKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQ----NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFK---  381 (630)
Q Consensus       315 ------~~~l~dv~TG~~lt~eef~~l~GHs~~V~~Lafs~----~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~---  381 (630)
                            ...++-..+++.+     ..+.+|...|.+++|+|    .+++++.|++++ +||..+++.+.++. +|..   
T Consensus       135 ~~~~~~~~~v~~~d~~~~~-----~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~-vwd~~~~~~~~~~~-~~~~~~~  207 (615)
T 1pgu_A          135 GEGRDNFGVFISWDSGNSL-----GEVSGHSQRINACHLKQSRPMRSMTVGDDGSVV-FYQGPPFKFSASDR-THHKQGS  207 (615)
T ss_dssp             ECCSSCSEEEEETTTCCEE-----EECCSCSSCEEEEEECSSSSCEEEEEETTTEEE-EEETTTBEEEEEEC-SSSCTTC
T ss_pred             ccCCCCccEEEEEECCCcc-----eeeecCCccEEEEEECCCCCcEEEEEeCCCcEE-EEeCCCcceeeeec-ccCCCCc
Confidence                  0123333356655     78889999999999999    599999999999 99999999999998 8999   


Q ss_pred             CEEEEEEcCC-CCeEEeecCCC-----C--Ccc----c-c---CCcceEEEeecCCCe--EEEecCCcEEEEEeCCCCcc
Q 006825          382 SIRTVASSVT-GHKERRSSDER-----D--TSS----E-K---GGRRSSSATDDSQDV--SFHGQERVRVRQYGKSCKDL  443 (630)
Q Consensus       382 ~V~sVAfSpd-G~~lasgS~D~-----d--t~s----~-~---gh~~~Vsa~~~s~d~--l~Sgs~Dg~VriWd~~~~el  443 (630)
                      .|.+++|+|+ |+++++++.|+     +  +..    . .   +|...|.++.++ ++  +++++.|+.|++||..+++ 
T Consensus       208 ~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~-  285 (615)
T 1pgu_A          208 FVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSK-  285 (615)
T ss_dssp             CEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTE-
T ss_pred             eEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCc-
Confidence            9999999999 99999999887     1  111    3 4   899999999997 65  8999999999999998664 


Q ss_pred             cceeeeeEeccc----CcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccCccc---------------
Q 006825          444 TALYKCQEIQAH----NGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLN---------------  504 (630)
Q Consensus       444 ~~~~~v~tL~gH----t~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~---------------  504 (630)
                          ++..+..|    ...+.++.|. ++++|++++.|+.|++||+.+++.+..+     .+|..               
T Consensus       286 ----~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~d~~~~~~~~~~-----~~~~~~v~~~~~~~l~~~~~  355 (615)
T 1pgu_A          286 ----CVQKWTLDKQQLGNQQVGVVAT-GNGRIISLSLDGTLNFYELGHDEVLKTI-----SGHNKGITALTVNPLISGSY  355 (615)
T ss_dssp             ----EEEEEECCTTCGGGCEEEEEEE-ETTEEEEEETTSCEEEEETTEEEEEEEE-----CCCSSCEEEEETTTTEEEET
T ss_pred             ----EEEEEcCCCCcccCceeEEEeC-CCCeEEEEECCCCEEEEECCCCcEEEEE-----eCCCCCEEEEEecCcEEECC
Confidence                35566666    5788999996 9999999999999999999987766654     44444               


Q ss_pred             ------------------ceEEEEECCCCCEEEEeeCCCeeeeeccccccc-----------------------------
Q 006825          505 ------------------MLLLANGSPEPTSLSPKHLDNHLEKKRRGRSIN-----------------------------  537 (630)
Q Consensus       505 ------------------~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~-----------------------------  537 (630)
                                        .|.+++| +++..+++++.|+.+++|+......                             
T Consensus       356 dg~i~~w~~~~~~~~~~~~v~~~~~-~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~  434 (615)
T 1pgu_A          356 DGRIMEWSSSSMHQDHSNLIVSLDN-SKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQS  434 (615)
T ss_dssp             TSCEEETTTTEEECCCCSCEEEEEC-CSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEET
T ss_pred             CCeEEEEEchhhcCcccCceEEEEE-CCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEec
Confidence                              4455555 3366667777777777776543110                             


Q ss_pred             ------------------------cccccc-CccccccEEEeCCCCce--EEeccCCCCEEEEEEcCC-CeEEEEECCCc
Q 006825          538 ------------------------RKSLSL-DHMVVPETVFALSDKPI--CSFQGHLDDVLDLSWSKS-QHLLSSSMDKT  589 (630)
Q Consensus       538 ------------------------~~s~s~-d~~i~~~~Vwdlsgk~l--~tL~GHs~~V~sLafSPd-~~LaSgS~Dgt  589 (630)
                                              ...... ++.+   ++|++....+  ..+.+|...|++++|+|+ .+|++++.|++
T Consensus       435 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~i---~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~  511 (615)
T 1pgu_A          435 FTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTI---QVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGK  511 (615)
T ss_dssp             TTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCE---EEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred             cCCceeeecccCCCceEEEEcCCEEEEeecCCCeE---EEEECCCccccccccCCccCceEEEEECCCCCEEEEcCCCCe
Confidence                                    000111 3334   7788754433  677899999999999999 99999999999


Q ss_pred             EEEEeCCCCcEEEEEe--cCCceEEEE-cC----------CCcEEEEecce
Q 006825          590 VRLWHLSSKTCLKIFS--HSDYDISLV-DR----------LMLRFAYGAFL  627 (630)
Q Consensus       590 VrIWDl~tg~~l~t~~--H~~~V~sVa-s~----------~~~~lAsgs~~  627 (630)
                      |+|||+.+++++..+.  |...|++++ +|          ++..+++++.+
T Consensus       512 i~iw~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~d  562 (615)
T 1pgu_A          512 ILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLD  562 (615)
T ss_dssp             EEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETT
T ss_pred             EEEeeCCCCcceeEeecCCCCceeEEEEcCccccccccccCCCEEEEEcCC
Confidence            9999999999999887  999999999 88          89999998654

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=99.97  E-value=2.8e-31  Score=274.72  Aligned_cols=240  Identities=16%  Similarity=0.161  Sum_probs=193.7

Q ss_pred             eeecCccceeEEEeec---ceEeecCCCccEecccCCCCc--eeEEecCCccCCEEEEEEcC--CCCeEEeecCCC----
Q 006825          334 MCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGG--MKSKKKGSWFKSIRTVASSV--TGHKERRSSDER----  402 (630)
Q Consensus       334 ~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~--~~~~lk~gH~~~V~sVAfSp--dG~~lasgS~D~----  402 (630)
                      .+.||...|++++|+|   .||+|+.|++++ +||+.++.  .+.+++ +|...|.+|+|++  +|++|++++.|+    
T Consensus         8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~-lwd~~~~~~~~~~~l~-gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~i   85 (316)
T 3bg1_A            8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVK-IFDVRNGGQILIADLR-GHEGPVWQVAWAHPMYGNILASCSYDRKVII   85 (316)
T ss_dssp             ------CCEEEEEECGGGCEEEEEETTTEEE-EEEEETTEEEEEEEEE-CCSSCEEEEEECCGGGSSCEEEEETTSCEEE
T ss_pred             ecccccCeEEEeeEcCCCCEEEEEeCCCeEE-EEEecCCCcEEEEEEc-CCCccEEEEEeCCCCCCCEEEEEECCCEEEE
Confidence            4579999999999998   799999999999 99998875  467788 9999999999986  489999999987    


Q ss_pred             -C--Cc------cccCCcceEEEeecCCC--e--EEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccC--
Q 006825          403 -D--TS------SEKGGRRSSSATDDSQD--V--SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLD--  467 (630)
Q Consensus       403 -d--t~------s~~gh~~~Vsa~~~s~d--~--l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpD--  467 (630)
                       +  +.      .+.+|...|.+++|+++  +  +++|+.|++|++|+......  ......+.+|...|.+++|+|+  
T Consensus        86 Wd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~--~~~~~~~~~h~~~v~~~~~~~~~~  163 (316)
T 3bg1_A           86 WREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQ--WEVKKINNAHTIGCNAVSWAPAVV  163 (316)
T ss_dssp             ECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSC--EEECCBTTSSSSCBCCCEECCCCC
T ss_pred             EECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCC--cceeeeeccccCCcceEEEccccC
Confidence             2  21      25679999999999986  4  89999999999999876421  1224567899999999999997  


Q ss_pred             ---------------CCEEEEEeCCCcEEEEECcCCc---eeeeeecccccCcccceEEEEECCCC----CEEEEeeCCC
Q 006825          468 ---------------GRYLASAGEDCVIHVWQVVESE---RKGELLEKQEDGHLNMLLLANGSPEP----TSLSPKHLDN  525 (630)
Q Consensus       468 ---------------G~~LASgS~DgtIrVWDl~tg~---~~~~l~~~~~~gh~~~V~svafSpdg----~~lasgs~Dg  525 (630)
                                     +++|++|+.|++|+|||+....   ....     +.+|...|.+++|+|++    .+|++++.|+
T Consensus       164 ~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~-----l~~h~~~V~~v~~sp~~~~~~~~las~s~D~  238 (316)
T 3bg1_A          164 PGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQK-----LEAHSDWVRDVAWAPSIGLPTSTIASCSQDG  238 (316)
T ss_dssp             C------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEEC-----CBCCSSCEEEEECCCCSSCSCCEEEEEETTC
T ss_pred             CccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeee-----cccCCCceEEEEecCCCCCCCceEEEEcCCC
Confidence                           4799999999999999997542   3333     47899999999999986    8999999999


Q ss_pred             eeeeecccccccccccccCccccccEEEeCCC-----CceEEeccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCC-C
Q 006825          526 HLEKKRRGRSINRKSLSLDHMVVPETVFALSD-----KPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSS-K  598 (630)
Q Consensus       526 ~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsg-----k~l~tL~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~t-g  598 (630)
                      +|                       ++|++..     .....+.+|...|++++|+|+ .+|++++.|++|+||+... +
T Consensus       239 ~v-----------------------~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~~~g  295 (316)
T 3bg1_A          239 RV-----------------------FIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKESVDG  295 (316)
T ss_dssp             EE-----------------------EEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEECTTS
T ss_pred             eE-----------------------EEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEECCCC
Confidence            99                       5666522     123456779999999999999 9999999999999999763 3


Q ss_pred             --cEEEEEe
Q 006825          599 --TCLKIFS  605 (630)
Q Consensus       599 --~~l~t~~  605 (630)
                        .|+..+.
T Consensus       296 ~~~~~~~~~  304 (316)
T 3bg1_A          296 QWVCISDVN  304 (316)
T ss_dssp             CEEEEEECC
T ss_pred             cEEEeeecc
Confidence              4555554

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=99.97  E-value=1.3e-29  Score=271.72  Aligned_cols=254  Identities=15%  Similarity=0.132  Sum_probs=213.3

Q ss_pred             eeEEEEcCCCceEeeecceeeecCccceeEEEeec---ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCC
Q 006825          315 WKKVKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVT  391 (630)
Q Consensus       315 ~~~l~dv~TG~~lt~eef~~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpd  391 (630)
                      ..++|++.||+.+   ....+.+|...|++|+|+|   +||+|+.|++|+ +||+.+++.+.++. +|...|.++++  +
T Consensus       126 tV~lWd~~tg~~~---~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~-iWd~~~~~~~~~~~-~h~~~v~~~s~--~  198 (420)
T 4gga_A          126 SVYLWSASSGDIL---QLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQ-LWDVQQQKRLRNMT-SHSARVGSLSW--N  198 (420)
T ss_dssp             EEEEEETTTCCEE---EEEECCSTTCCEEEEEECTTSSEEEEEETTSCEE-EEETTTTEEEEEEC-CCSSCEEEEEE--E
T ss_pred             EEEEEECCCCCEE---EEEEecCCCCcEEEEEECCCCCEEEEEECCCeEE-EEEcCCCcEEEEEe-CCCCceEEEee--C
Confidence            5889999999887   1224567889999999999   899999999999 99999999999998 99999987766  5


Q ss_pred             CCeEEeecCCC-----C-------CccccCCcceEEEeecCCCe--EEEecCCcEEEEEeCCCCcccceeeeeEecccCc
Q 006825          392 GHKERRSSDER-----D-------TSSEKGGRRSSSATDDSQDV--SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNG  457 (630)
Q Consensus       392 G~~lasgS~D~-----d-------t~s~~gh~~~Vsa~~~s~d~--l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~  457 (630)
                      +.++++|+.|.     +       ...+.+|...+..+.+.+++  +++++.|+.|++|+...++... ..+..+..|..
T Consensus       199 ~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~-~~~~~~~~~~~  277 (420)
T 4gga_A          199 SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGW-VPLQTFTQHQG  277 (420)
T ss_dssp             TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCS-CCSEEECCCSS
T ss_pred             CCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeeccccccc-eeeeeecccCC
Confidence            68999999887     1       12368899999999999887  8999999999999998765322 24567889999


Q ss_pred             CEEEEEEccCC-CEEEEE--eCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEee--CCCeeeeecc
Q 006825          458 SIWSIKFSLDG-RYLASA--GEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKH--LDNHLEKKRR  532 (630)
Q Consensus       458 ~V~sVaFSpDG-~~LASg--S~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs--~Dg~I~i~~~  532 (630)
                      .|.+++|+|++ .+|+++  +.|++|+|||+.++.....+     . +...+..+.|+|++..+++++  .|+.|     
T Consensus       278 ~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~-----~-~~~~v~~~~~~~~~~~lv~~sg~~d~~I-----  346 (420)
T 4gga_A          278 AVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAV-----D-AHSQVCSILWSPHYKELISGHGFAQNQL-----  346 (420)
T ss_dssp             CEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEE-----E-CSSCEEEEEEETTTTEEEEEECTTTCCE-----
T ss_pred             ceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceee-----c-cccceeeeeecCCCCeEEEEEecCCCEE-----
Confidence            99999999954 566654  58999999999999888774     2 335688899999999888765  68888     


Q ss_pred             cccccccccccCccccccEEEeC-CCCceEEeccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCCCcEEEEEe
Q 006825          533 GRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS  605 (630)
Q Consensus       533 ~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg~~l~t~~  605 (630)
                                        ++|++ +++++.+|.||.+.|++|+|+|+ .+|+|||.|++|||||+....+.+...
T Consensus       347 ------------------~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~~~~~~~~  403 (420)
T 4gga_A          347 ------------------VIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELDPARRRE  403 (420)
T ss_dssp             ------------------EEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCSSCC----
T ss_pred             ------------------EEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCCccchhh
Confidence                              88888 78999999999999999999999 999999999999999998776665554

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=99.97  E-value=6.1e-30  Score=292.38  Aligned_cols=262  Identities=15%  Similarity=0.153  Sum_probs=220.5

Q ss_pred             eeeecCccceeEEEeec----ceEeecCCCccEecccCCCC-----ceeEEecCCccCCEEEEEEcCCCCeEEeecCCC-
Q 006825          333 EMCVGHSPIVQELMRRQ----NVEEGNKDSFDLNNNGSSGG-----GMKSKKKGSWFKSIRTVASSVTGHKERRSSDER-  402 (630)
Q Consensus       333 ~~l~GHs~~V~~Lafs~----~laSgS~D~tvr~vWD~~tG-----~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~-  402 (630)
                      ..+.||+..|++|+|+|    .|+|||.|++|+ +|++.++     ...+++. +|...|.+|+|+|+|++|++++.|+ 
T Consensus       376 ~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~-~W~~~~~~~~~~~~~~~~~-~h~~~v~~v~~s~~g~~l~sgs~Dg~  453 (694)
T 3dm0_A          376 GTMRAHTDMVTAIATPIDNADIIVSASRDKSII-LWKLTKDDKAYGVAQRRLT-GHSHFVEDVVLSSDGQFALSGSWDGE  453 (694)
T ss_dssp             EEEECCSSCEEEEECCTTCCSEEEEEETTSEEE-EEECCCSTTCSCEEEEEEE-CCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred             hhcccCCceeEEEEecCCCCCEEEEEeCCCcEE-EEEccCCCcccccccceec-CCCCcEEEEEECCCCCEEEEEeCCCc
Confidence            45889999999999986    699999999999 9998763     4566777 9999999999999999999999997 


Q ss_pred             ----C--C----ccccCCcceEEEeecCCCe--EEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCC--
Q 006825          403 ----D--T----SSEKGGRRSSSATDDSQDV--SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDG--  468 (630)
Q Consensus       403 ----d--t----~s~~gh~~~Vsa~~~s~d~--l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG--  468 (630)
                          +  +    ..+.+|...|.++.+++++  +++++.|++|++||......  ........+|...|.+++|+|++  
T Consensus       454 v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~--~~~~~~~~~h~~~v~~~~~~~~~~~  531 (694)
T 3dm0_A          454 LRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECK--YTISEGGEGHRDWVSCVRFSPNTLQ  531 (694)
T ss_dssp             EEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEE--EEECSSTTSCSSCEEEEEECSCSSS
T ss_pred             EEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcc--eeeccCCCCCCCcEEEEEEeCCCCc
Confidence                2  1    2367999999999999987  99999999999999754321  11112236899999999999987  


Q ss_pred             CEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCcccc
Q 006825          469 RYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVV  548 (630)
Q Consensus       469 ~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~  548 (630)
                      .+|++|+.|++|+|||+.+++....+     .+|...|.+++|+|++.+|++++.|+.|                     
T Consensus       532 ~~l~s~s~d~~v~vwd~~~~~~~~~~-----~~h~~~v~~v~~spdg~~l~sg~~Dg~i---------------------  585 (694)
T 3dm0_A          532 PTIVSASWDKTVKVWNLSNCKLRSTL-----AGHTGYVSTVAVSPDGSLCASGGKDGVV---------------------  585 (694)
T ss_dssp             CEEEEEETTSCEEEEETTTCCEEEEE-----CCCSSCEEEEEECTTSSEEEEEETTSBC---------------------
T ss_pred             ceEEEEeCCCeEEEEECCCCcEEEEE-----cCCCCCEEEEEEeCCCCEEEEEeCCCeE---------------------
Confidence            68999999999999999988877764     7999999999999999999999999999                     


Q ss_pred             ccEEEeC-CCCceEEeccCCCCEEEEEEcCCCeEEEEECCCcEEEEeCCCCcEEEEEe-cC-------------------
Q 006825          549 PETVFAL-SDKPICSFQGHLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFS-HS-------------------  607 (630)
Q Consensus       549 ~~~Vwdl-sgk~l~tL~GHs~~V~sLafSPd~~LaSgS~DgtVrIWDl~tg~~l~t~~-H~-------------------  607 (630)
                        ++|++ +++++..+.. ...|.+++|+|++++++++.|+.|+|||+.+++++..+. |.                   
T Consensus       586 --~iwd~~~~~~~~~~~~-~~~v~~~~~sp~~~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  662 (694)
T 3dm0_A          586 --LLWDLAEGKKLYSLEA-NSVIHALCFSPNRYWLCAATEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKV  662 (694)
T ss_dssp             --EEEETTTTEEEECCBC-SSCEEEEEECSSSSEEEEEETTEEEEEETTTTEEEEEECCCCC----------------CC
T ss_pred             --EEEECCCCceEEEecC-CCcEEEEEEcCCCcEEEEEcCCCEEEEECCCCCChhhhccccccccccccccccccCCcee
Confidence              78887 6777777664 467999999999555555667889999999999988775 21                   


Q ss_pred             CceEEEE-cCCCcEEEEecce
Q 006825          608 DYDISLV-DRLMLRFAYGAFL  627 (630)
Q Consensus       608 ~~V~sVa-s~~~~~lAsgs~~  627 (630)
                      ..|++++ ++++..|++++.+
T Consensus       663 ~~~~~l~~spdg~~l~sgs~D  683 (694)
T 3dm0_A          663 IYCTSLNWSADGSTLFSGYTD  683 (694)
T ss_dssp             CCEEEEEECTTSSEEEEEETT
T ss_pred             EEeeeEEEcCCCCEEEEEcCC
Confidence            2477888 9999999998765

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.97  E-value=2e-30  Score=275.05  Aligned_cols=224  Identities=13%  Similarity=0.030  Sum_probs=178.5

Q ss_pred             eeEEEEcCCCce-E---eeecceeeecCccceeEEEeec---c--eEeecCCCccEecccCCCCceeEEecCCccCCEEE
Q 006825          315 WKKVKEVGTGRQ-L---TIEEFEMCVGHSPIVQELMRRQ---N--VEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRT  385 (630)
Q Consensus       315 ~~~l~dv~TG~~-l---t~eef~~l~GHs~~V~~Lafs~---~--laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~s  385 (630)
                      ..++|++.++.. +   ....+....++...|+.++|+|   .  +|+|+.|++|| +||+.+++++.++.  |...|++
T Consensus       105 ~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~-iwd~~~~~~~~~~~--~~~~V~~  181 (365)
T 4h5i_A          105 HLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMR-IIDPSDLTEKFEIE--TRGEVKD  181 (365)
T ss_dssp             CEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEE-EEETTTTEEEEEEE--CSSCCCE
T ss_pred             cEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEE-EeECCCCcEEEEeC--CCCceEE
Confidence            356777765432 2   2223344556677899999999   3  45778999999 99999999998875  6778999


Q ss_pred             EEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEc
Q 006825          386 VASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFS  465 (630)
Q Consensus       386 VAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFS  465 (630)
                      |+|+|||+++++++++                              .+++|+..+++.   .....+.+|...|.+++|+
T Consensus       182 v~fspdg~~l~s~s~~------------------------------~~~~~~~~~~~~---~~~~~~~~~~~~v~~v~fs  228 (365)
T 4h5i_A          182 LHFSTDGKVVAYITGS------------------------------SLEVISTVTGSC---IARKTDFDKNWSLSKINFI  228 (365)
T ss_dssp             EEECTTSSEEEEECSS------------------------------CEEEEETTTCCE---EEEECCCCTTEEEEEEEEE
T ss_pred             EEEccCCceEEeccce------------------------------eEEEEEeccCcc---eeeeecCCCCCCEEEEEEc
Confidence            9999999999766544                              266666655432   1224467899999999999


Q ss_pred             cCCCEEEEEeCCC----cEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeeccccccccccc
Q 006825          466 LDGRYLASAGEDC----VIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSL  541 (630)
Q Consensus       466 pDG~~LASgS~Dg----tIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~  541 (630)
                      |+|++|++++.|+    ++++|++......... .....+|...|.+++|+|+|++|++|+.|++|              
T Consensus       229 pdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V--------------  293 (365)
T 4h5i_A          229 ADDTVLIAASLKKGKGIVLTKISIKSGNTSVLR-SKQVTNRFKGITSMDVDMKGELAVLASNDNSI--------------  293 (365)
T ss_dssp             ETTEEEEEEEESSSCCEEEEEEEEETTEEEEEE-EEEEESSCSCEEEEEECTTSCEEEEEETTSCE--------------
T ss_pred             CCCCEEEEEecCCcceeEEeecccccceeccee-eeeecCCCCCeEeEEECCCCCceEEEcCCCEE--------------
Confidence            9999999999988    6889998766543211 12247889999999999999999999999999              


Q ss_pred             ccCccccccEEEeC-CCCceEEe-ccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCCC
Q 006825          542 SLDHMVVPETVFAL-SDKPICSF-QGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSK  598 (630)
Q Consensus       542 s~d~~i~~~~Vwdl-sgk~l~tL-~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg  598 (630)
                               +||++ +++++.++ .+|...|++|+|+|| ++|||||.|++|||||+...
T Consensus       294 ---------~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~  344 (365)
T 4h5i_A          294 ---------ALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPLN  344 (365)
T ss_dssp             ---------EEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred             ---------EEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence                     88998 78888885 799999999999999 99999999999999999653

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=99.97  E-value=4.2e-30  Score=269.82  Aligned_cols=258  Identities=14%  Similarity=0.016  Sum_probs=213.1

Q ss_pred             eeeecCccceeEEEeec----ceEeecCCCccEecccCCCCceeEEecC-CccCCEEEEEEcC-CCCeEEeecCCC----
Q 006825          333 EMCVGHSPIVQELMRRQ----NVEEGNKDSFDLNNNGSSGGGMKSKKKG-SWFKSIRTVASSV-TGHKERRSSDER----  402 (630)
Q Consensus       333 ~~l~GHs~~V~~Lafs~----~laSgS~D~tvr~vWD~~tG~~~~~lk~-gH~~~V~sVAfSp-dG~~lasgS~D~----  402 (630)
                      ..+.+|...|.+|+|+|    .|++|+.|++++ +||+.+++....++. +|...|.+++|+| +++++++++.|+    
T Consensus        67 ~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~-iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~i  145 (383)
T 3ei3_B           67 RTASPFDRRVTSLEWHPTHPTTVAVGSKGGDII-LWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTL  145 (383)
T ss_dssp             EEECCCSSCEEEEEECSSCTTEEEEEEBTSCEE-EEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEE
T ss_pred             EeccCCCCCEEEEEECCCCCCEEEEEcCCCeEE-EEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEE
Confidence            67889999999999998    699999999999 999999988887763 7999999999999 789999999887    


Q ss_pred             -CCc-----c---ccCCcceEEEeecCCCe--EEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCC-E
Q 006825          403 -DTS-----S---EKGGRRSSSATDDSQDV--SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGR-Y  470 (630)
Q Consensus       403 -dt~-----s---~~gh~~~Vsa~~~s~d~--l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~-~  470 (630)
                       +..     .   ..+|...|.++++++++  +++++.|+.|++||+...      .+..+.+|...|.+++|+|+++ +
T Consensus       146 wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~------~~~~~~~h~~~v~~~~~~~~~~~~  219 (383)
T 3ei3_B          146 RDFSGSVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLDGH------EIFKEKLHKAKVTHAEFNPRCDWL  219 (383)
T ss_dssp             EETTSCEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETTSC------EEEEEECSSSCEEEEEECSSCTTE
T ss_pred             EECCCCceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECCCC------EEEEeccCCCcEEEEEECCCCCCE
Confidence             111     1   24455789999999887  999999999999998432      5678899999999999999999 9


Q ss_pred             EEEEeCCCcEEEEECcCC----ceeeeeecccccCcccceEEEEECC-CCCEEEEeeCCCeeeeecccccccccccccCc
Q 006825          471 LASAGEDCVIHVWQVVES----ERKGELLEKQEDGHLNMLLLANGSP-EPTSLSPKHLDNHLEKKRRGRSINRKSLSLDH  545 (630)
Q Consensus       471 LASgS~DgtIrVWDl~tg----~~~~~l~~~~~~gh~~~V~svafSp-dg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~  545 (630)
                      |++|+.|++|+|||+.+.    ..+..      .+|...|.+++|+| ++.+|++++.|+.|++|+..            
T Consensus       220 l~s~~~d~~i~iwd~~~~~~~~~~~~~------~~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~------------  281 (383)
T 3ei3_B          220 MATSSVDATVKLWDLRNIKDKNSYIAE------MPHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSY------------  281 (383)
T ss_dssp             EEEEETTSEEEEEEGGGCCSTTCEEEE------EECSSCEEEEEECTTTSCEEEEEESSSEEEEEETT------------
T ss_pred             EEEEeCCCEEEEEeCCCCCcccceEEE------ecCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECC------------
Confidence            999999999999999984    33333      36889999999999 99999999999999544433            


Q ss_pred             cccccEEEeCCCCceEEeccCC-----------------CCEEEEEEcCCCeEEEEECCCcEEEEeCCCCcEEEEEe---
Q 006825          546 MVVPETVFALSDKPICSFQGHL-----------------DDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFS---  605 (630)
Q Consensus       546 ~i~~~~Vwdlsgk~l~tL~GHs-----------------~~V~sLafSPd~~LaSgS~DgtVrIWDl~tg~~l~t~~---  605 (630)
                                +++.+.++.+|.                 ..+..++|+|++.+ +++.|++|+|||+.+++++.++.   
T Consensus       282 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~-s~s~d~~i~iwd~~~~~~~~~l~~~~  350 (383)
T 3ei3_B          282 ----------DWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL-LLNDKRTIDIYDANSGGLVHQLRDPN  350 (383)
T ss_dssp             ----------BTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT-CTTCCCCEEEEETTTCCEEEEECBTT
T ss_pred             ----------CCccccccccccccccccccceEEeccCCCCceEEEecCCccc-ccCCCCeEEEEecCCCceeeeecCCC
Confidence                      334444444332                 45566778888333 88899999999999999999997   


Q ss_pred             cCCceEEEE-cCCCcEEEEecc
Q 006825          606 HSDYDISLV-DRLMLRFAYGAF  626 (630)
Q Consensus       606 H~~~V~sVa-s~~~~~lAsgs~  626 (630)
                      |...+.+++ ++++..+++++.
T Consensus       351 ~~~~~~~~~~s~~g~~l~s~sd  372 (383)
T 3ei3_B          351 AAGIISLNKFSPTGDVLASGMG  372 (383)
T ss_dssp             BCSCCCEEEECTTSSEEEEEET
T ss_pred             CCceEEEEEEecCccEEEEecC
Confidence            567777778 889999998863

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=99.97  E-value=4.2e-29  Score=256.47  Aligned_cols=264  Identities=13%  Similarity=0.044  Sum_probs=229.6

Q ss_pred             eeeecCccceeEEEeec---ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCC-----C-
Q 006825          333 EMCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDER-----D-  403 (630)
Q Consensus       333 ~~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~-----d-  403 (630)
                      .++.||...|.+|+|+|   .|++|+.|++++ +||+.+++.+.++. +|...|.+++|+|+|+++++++.|+     + 
T Consensus        26 ~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~-vwd~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~  103 (369)
T 3zwl_B           26 IKLTGHERPLTQVKYNKEGDLLFSCSKDSSAS-VWYSLNGERLGTLD-GHTGTIWSIDVDCFTKYCVTGSADYSIKLWDV  103 (369)
T ss_dssp             EEEECCSSCEEEEEECTTSCEEEEEESSSCEE-EEETTTCCEEEEEC-CCSSCEEEEEECTTSSEEEEEETTTEEEEEET
T ss_pred             EEEEEeeceEEEEEEcCCCCEEEEEeCCCEEE-EEeCCCchhhhhhh-hcCCcEEEEEEcCCCCEEEEEeCCCeEEEEEC
Confidence            56899999999999998   799999999999 99999999999998 9999999999999999999999887     1 


Q ss_pred             -Ccc---ccCCcceEEEeecCCCe--EEEecCC-----cEEEEEeCCCCcccce------eeeeEecccCc--CEEEEEE
Q 006825          404 -TSS---EKGGRRSSSATDDSQDV--SFHGQER-----VRVRQYGKSCKDLTAL------YKCQEIQAHNG--SIWSIKF  464 (630)
Q Consensus       404 -t~s---~~gh~~~Vsa~~~s~d~--l~Sgs~D-----g~VriWd~~~~el~~~------~~v~tL~gHt~--~V~sVaF  464 (630)
                       +..   ...+...+.++.+++++  ++++..+     +.|++|+.........      ..+..+.+|.+  .|.+++|
T Consensus       104 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (369)
T 3zwl_B          104 SNGQCVATWKSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGW  183 (369)
T ss_dssp             TTCCEEEEEECSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEE
T ss_pred             CCCcEEEEeecCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEE
Confidence             111   22277789999999988  8888888     9999999876542111      13456677877  9999999


Q ss_pred             ccCCCEEEEEeCCCcEEEEECcC-CceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeeccccccccccccc
Q 006825          465 SLDGRYLASAGEDCVIHVWQVVE-SERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSL  543 (630)
Q Consensus       465 SpDG~~LASgS~DgtIrVWDl~t-g~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~  543 (630)
                      +|++++|++++.|+.|++||+.+ ...+..+     ..|...|.+++|+|++.+|++++.|+.|                
T Consensus       184 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~l~~~~~d~~i----------------  242 (369)
T 3zwl_B          184 STKGKYIIAGHKDGKISKYDVSNNYEYVDSI-----DLHEKSISDMQFSPDLTYFITSSRDTNS----------------  242 (369)
T ss_dssp             CGGGCEEEEEETTSEEEEEETTTTTEEEEEE-----ECCSSCEEEEEECTTSSEEEEEETTSEE----------------
T ss_pred             cCCCCEEEEEcCCCEEEEEECCCCcEeEEEE-----ecCCCceeEEEECCCCCEEEEecCCceE----------------
Confidence            99999999999999999999998 5555553     6788999999999999999999999999                


Q ss_pred             CccccccEEEeC-CCCceEEeccCCCCEEEEEEcCC-CeEEEEECCC--------------cEEEEeCCCCcEEEEEe-c
Q 006825          544 DHMVVPETVFAL-SDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDK--------------TVRLWHLSSKTCLKIFS-H  606 (630)
Q Consensus       544 d~~i~~~~Vwdl-sgk~l~tL~GHs~~V~sLafSPd-~~LaSgS~Dg--------------tVrIWDl~tg~~l~t~~-H  606 (630)
                             .+|++ +++.+..+. |...+..++|+|+ .+|++++.++              .|++||+.+++++..+. |
T Consensus       243 -------~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~  314 (369)
T 3zwl_B          243 -------FLVDVSTLQVLKKYE-TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGH  314 (369)
T ss_dssp             -------EEEETTTCCEEEEEE-CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECC
T ss_pred             -------EEEECCCCceeeeec-CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecc
Confidence                   78888 667777776 8889999999999 9999999998              89999999999999998 9


Q ss_pred             CCceEEEE-cCCCcEEEEecce
Q 006825          607 SDYDISLV-DRLMLRFAYGAFL  627 (630)
Q Consensus       607 ~~~V~sVa-s~~~~~lAsgs~~  627 (630)
                      ...|++++ ++++..+++++.+
T Consensus       315 ~~~v~~~~~s~~~~~l~s~~~d  336 (369)
T 3zwl_B          315 FGPLNTVAISPQGTSYASGGED  336 (369)
T ss_dssp             SSCEEEEEECTTSSEEEEEETT
T ss_pred             cCcEEEEEECCCCCEEEEEcCC
Confidence            99999999 8899999988654

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=99.97  E-value=1.6e-30  Score=280.46  Aligned_cols=265  Identities=14%  Similarity=0.058  Sum_probs=210.4

Q ss_pred             eeeecCccceeEEEeec----ceEeecCCCccEecccCCCCceeEEec-CCccCCEEEEEEcC-CCCeEEeecCCC----
Q 006825          333 EMCVGHSPIVQELMRRQ----NVEEGNKDSFDLNNNGSSGGGMKSKKK-GSWFKSIRTVASSV-TGHKERRSSDER----  402 (630)
Q Consensus       333 ~~l~GHs~~V~~Lafs~----~laSgS~D~tvr~vWD~~tG~~~~~lk-~gH~~~V~sVAfSp-dG~~lasgS~D~----  402 (630)
                      ....+|...|++|+|+|    .||+|+.|++|+ |||+.++.....++ .+|.+.|.+|+|+| ++.+|++++.|+    
T Consensus       113 ~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~-lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~i  191 (435)
T 4e54_B          113 QKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIM-LWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRL  191 (435)
T ss_dssp             CEEEECSSCEEEEEECSSCTTCEEEEETTSCEE-EECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEE
T ss_pred             ccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEE-EEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEE
Confidence            45678899999999998    699999999999 99999887554433 28999999999998 789999999987    


Q ss_pred             -CC--cc------ccCCcceEEEeecCCCe--EEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCC-E
Q 006825          403 -DT--SS------EKGGRRSSSATDDSQDV--SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGR-Y  470 (630)
Q Consensus       403 -dt--~s------~~gh~~~Vsa~~~s~d~--l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~-~  470 (630)
                       +.  ..      ...+...+.++++++++  +++|+.|+.|++||+..+      .+.++.+|...|++|+|+|++. +
T Consensus       192 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~------~~~~~~~h~~~v~~v~~~p~~~~~  265 (435)
T 4e54_B          192 QDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGK------ELWNLRMHKKKVTHVALNPCCDWF  265 (435)
T ss_dssp             EETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSC------BCCCSBCCSSCEEEEEECTTCSSE
T ss_pred             eeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcc------eeEEEecccceEEeeeecCCCceE
Confidence             21  11      22334456777777776  899999999999998765      3567889999999999999876 8


Q ss_pred             EEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCcccccc
Q 006825          471 LASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPE  550 (630)
Q Consensus       471 LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~  550 (630)
                      |++|+.|++|+|||+.+......+.  ...+|...|.+++|+|++.+|++++.|+.|                       
T Consensus       266 ~~s~s~d~~v~iwd~~~~~~~~~~~--~~~~h~~~v~~~~~spdg~~l~s~~~D~~i-----------------------  320 (435)
T 4e54_B          266 LATASVDQTVKIWDLRQVRGKASFL--YSLPHRHPVNAACFSPDGARLLTTDQKSEI-----------------------  320 (435)
T ss_dssp             EEEEETTSBCCEEETTTCCSSSCCS--BCCBCSSCEEECCBCTTSSEEEEEESSSCE-----------------------
T ss_pred             EEEecCcceeeEEecccccccceEE--EeeeccccccceeECCCCCeeEEEcCCCEE-----------------------
Confidence            8999999999999998876655432  136799999999999999999999999999                       


Q ss_pred             EEEeC-CCCceEEeccCCCC------EEEEEEcCC-CeEEEEE------------CCCcEEEEeCCCCcEEEEEe--cCC
Q 006825          551 TVFAL-SDKPICSFQGHLDD------VLDLSWSKS-QHLLSSS------------MDKTVRLWHLSSKTCLKIFS--HSD  608 (630)
Q Consensus       551 ~Vwdl-sgk~l~tL~GHs~~------V~sLafSPd-~~LaSgS------------~DgtVrIWDl~tg~~l~t~~--H~~  608 (630)
                      ++|++ +++.+..+.+|...      +..+.|+|+ .++++++            .+++|+|||+.+++++..+.  |..
T Consensus       321 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~  400 (435)
T 4e54_B          321 RVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESS  400 (435)
T ss_dssp             EEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCC
T ss_pred             EEEECCCCccceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCC
Confidence            66666 55666666555432      234556665 5555443            45689999999999999875  889


Q ss_pred             ceEEEE--cCCCcEEEEecceec
Q 006825          609 YDISLV--DRLMLRFAYGAFLNV  629 (630)
Q Consensus       609 ~V~sVa--s~~~~~lAsgs~~nI  629 (630)
                      .|.++.  +|++.+|++++...|
T Consensus       401 ~v~s~~~fspdg~~lasg~d~~i  423 (435)
T 4e54_B          401 GISSLNEFNPMGDTLASAMGYHI  423 (435)
T ss_dssp             CCCCEEEECTTSSCEEEECSSEE
T ss_pred             cEEEEEEECCCCCEEEEEcCCcE
Confidence            999885  889999998875554

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.97  E-value=8.5e-30  Score=260.97  Aligned_cols=266  Identities=9%  Similarity=0.022  Sum_probs=221.0

Q ss_pred             cceeeecCccceeEEEeec---ceEeecCCCccEecccCCCCc---eeEEecCCccCCEEEEEEcCCCC-eEEeecCCC-
Q 006825          331 EFEMCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGG---MKSKKKGSWFKSIRTVASSVTGH-KERRSSDER-  402 (630)
Q Consensus       331 ef~~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~---~~~~lk~gH~~~V~sVAfSpdG~-~lasgS~D~-  402 (630)
                      .++...+|...|.+++|+|   .|++|+.|++++ +|++.++.   ....+. +|...|.+++|+|+|+ ++++++.|+ 
T Consensus         3 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~-iw~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~dg~   80 (342)
T 1yfq_A            3 IVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLT-VYKFDIQAKNVDLLQSL-RYKHPLLCCNFIDNTDLQIYVGTVQGE   80 (342)
T ss_dssp             EEECSSCCSSCEEEEEEEGGGTEEEEEETTSEEE-EEEEETTTTEEEEEEEE-ECSSCEEEEEEEESSSEEEEEEETTSC
T ss_pred             ceecccCCCCcEEEEEEcCCCCEEEEEcCCCeEE-EEEeCCCCccccceeee-ecCCceEEEEECCCCCcEEEEEcCCCe
Confidence            3455679999999999998   699999999999 99999887   345555 8999999999999999 999999886 


Q ss_pred             ----CC-c-----cccC--CcceEEEeecCC-CeEEEecCCcEEEEEeCCCCcccc----eeeeeEecccCcCEEEEEEc
Q 006825          403 ----DT-S-----SEKG--GRRSSSATDDSQ-DVSFHGQERVRVRQYGKSCKDLTA----LYKCQEIQAHNGSIWSIKFS  465 (630)
Q Consensus       403 ----dt-~-----s~~g--h~~~Vsa~~~s~-d~l~Sgs~Dg~VriWd~~~~el~~----~~~v~tL~gHt~~V~sVaFS  465 (630)
                          +. .     ...+  |...|.++.+.+ ..+++++.|+.|++||+...+...    ..++..+. |...|.+++|+
T Consensus        81 i~~wd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~  159 (342)
T 1yfq_A           81 ILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMDTN  159 (342)
T ss_dssp             EEEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEEEEC
T ss_pred             EEEEEeccCCceEeccccCCCCceEEEEeCCCCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCceEEEEec
Confidence                33 2     2667  999999999986 339999999999999986510000    12344455 99999999999


Q ss_pred             cCCCEEEEEeCCCcEEEEECcC-CceeeeeecccccCcccceEEEEECC-CCCEEEEeeCCCeeeeeccccccccccccc
Q 006825          466 LDGRYLASAGEDCVIHVWQVVE-SERKGELLEKQEDGHLNMLLLANGSP-EPTSLSPKHLDNHLEKKRRGRSINRKSLSL  543 (630)
Q Consensus       466 pDG~~LASgS~DgtIrVWDl~t-g~~~~~l~~~~~~gh~~~V~svafSp-dg~~lasgs~Dg~I~i~~~~~~~~~~s~s~  543 (630)
                      |++  |++++.|+.|++||+.+ +.......   ...|...+.+++|+| ++.++++++.|+.|                
T Consensus       160 ~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~---~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i----------------  218 (342)
T 1yfq_A          160 SSR--LIVGMNNSQVQWFRLPLCEDDNGTIE---ESGLKYQIRDVALLPKEQEGYACSSIDGRV----------------  218 (342)
T ss_dssp             SSE--EEEEESTTEEEEEESSCCTTCCCEEE---ECSCSSCEEEEEECSGGGCEEEEEETTSEE----------------
T ss_pred             CCc--EEEEeCCCeEEEEECCccccccceee---ecCCCCceeEEEECCCCCCEEEEEecCCcE----------------
Confidence            988  99999999999999988 55432211   357788999999999 99999999999999                


Q ss_pred             CccccccEEEeC-CC------CceEEeccCCC---------CEEEEEEcCC-CeEEEEECCCcEEEEeCCCCcEEEEEe-
Q 006825          544 DHMVVPETVFAL-SD------KPICSFQGHLD---------DVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-  605 (630)
Q Consensus       544 d~~i~~~~Vwdl-sg------k~l~tL~GHs~---------~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg~~l~t~~-  605 (630)
                             .+|++ ..      +++..+.+|..         .|++++|+|+ .+|++++.||+|+|||+.+++++.++. 
T Consensus       219 -------~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~  291 (342)
T 1yfq_A          219 -------AVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAK  291 (342)
T ss_dssp             -------EEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCC
T ss_pred             -------EEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhc
Confidence                   66666 22      67778888865         9999999999 999999999999999999999999998 


Q ss_pred             c-CCceEEEEcCCCcEEEEeccee
Q 006825          606 H-SDYDISLVDRLMLRFAYGAFLN  628 (630)
Q Consensus       606 H-~~~V~sVas~~~~~lAsgs~~n  628 (630)
                      | ...|++++ +++..+++++.+.
T Consensus       292 ~h~~~v~~~~-~~~~~l~s~s~Dg  314 (342)
T 1yfq_A          292 FNEDSVVKIA-CSDNILCLATSDD  314 (342)
T ss_dssp             CSSSEEEEEE-ECSSEEEEEEECT
T ss_pred             ccCCCceEec-CCCCeEEEEecCC
Confidence            7 99999999 8999999987654

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=99.97  E-value=8.5e-30  Score=261.54  Aligned_cols=260  Identities=15%  Similarity=0.142  Sum_probs=212.8

Q ss_pred             eeeecCccceeEEEeec----ceEeecC---CCccEecccCCCCceeEEecCCccCCEEEEEEcCC---CCeEEeecCCC
Q 006825          333 EMCVGHSPIVQELMRRQ----NVEEGNK---DSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVT---GHKERRSSDER  402 (630)
Q Consensus       333 ~~l~GHs~~V~~Lafs~----~laSgS~---D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpd---G~~lasgS~D~  402 (630)
                      ..+.||...|.+++|+|    .+++|+.   |++++ +||+.+++.......+|...|.+++|+|+   |+++++++.|+
T Consensus        12 ~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~-iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg   90 (357)
T 3i2n_A           12 HIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQ-LYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGG   90 (357)
T ss_dssp             EEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEE-EEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTS
T ss_pred             hhccCCCCceEEEEEcCCCceEEEecCccCCCcEEE-EEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCC
Confidence            34578999999999999    5677877   99999 99999998877666589999999999998   79999999886


Q ss_pred             -----C--C-----ccccCCcceEEEe------ecCCCe--EEEecCCcEEEEEeCCCCcccceeeeeEecccCc----C
Q 006825          403 -----D--T-----SSEKGGRRSSSAT------DDSQDV--SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNG----S  458 (630)
Q Consensus       403 -----d--t-----~s~~gh~~~Vsa~------~~s~d~--l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~----~  458 (630)
                           +  +     ..+.+|...|.++      ++++++  +++++.|+.|++||+..++.    .+..+..|.+    .
T Consensus        91 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~----~~~~~~~~~~~~~~~  166 (357)
T 3i2n_A           91 NLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDD----PVANMEPVQGENKRD  166 (357)
T ss_dssp             CEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSS----CSEEECCCTTSCCCC
T ss_pred             eEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCC----cceeccccCCCCCCc
Confidence                 1  1     2267899999998      456665  99999999999999987642    3455666555    8


Q ss_pred             EEEEE----EccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECC---CCCEEEEeeCCCeeeeec
Q 006825          459 IWSIK----FSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSP---EPTSLSPKHLDNHLEKKR  531 (630)
Q Consensus       459 V~sVa----FSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSp---dg~~lasgs~Dg~I~i~~  531 (630)
                      |++++    |+|++++|++++.|+.|++||+.+++....      ..|...|.+++|+|   ++.++++++.|+.|    
T Consensus       167 v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~------~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i----  236 (357)
T 3i2n_A          167 CWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWE------TNIKNGVCSLEFDRKDISMNKLVATSLEGKF----  236 (357)
T ss_dssp             EEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEE------EECSSCEEEEEESCSSSSCCEEEEEESTTEE----
T ss_pred             eEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeee------cCCCCceEEEEcCCCCCCCCEEEEECCCCeE----
Confidence            99999    788999999999999999999998876443      56778999999999   99999999999999    


Q ss_pred             ccccccccccccCccccccEEEeC-CCCceE-----EeccCCCCEEEEEEcCC-C-eEEEEECCCcEEEEeCCCC-----
Q 006825          532 RGRSINRKSLSLDHMVVPETVFAL-SDKPIC-----SFQGHLDDVLDLSWSKS-Q-HLLSSSMDKTVRLWHLSSK-----  598 (630)
Q Consensus       532 ~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~-----tL~GHs~~V~sLafSPd-~-~LaSgS~DgtVrIWDl~tg-----  598 (630)
                                         ++|++ +++++.     .+.+|...|++++|+|+ . +|++++.|++|+|||+.++     
T Consensus       237 -------------------~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~  297 (357)
T 3i2n_A          237 -------------------HVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSK  297 (357)
T ss_dssp             -------------------EEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--
T ss_pred             -------------------EEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCccccc
Confidence                               55555 333333     34499999999999999 5 8999999999999999754     


Q ss_pred             --------------cEEEEEe-cCCceEEEE-cCCCcEEE-Eecc
Q 006825          599 --------------TCLKIFS-HSDYDISLV-DRLMLRFA-YGAF  626 (630)
Q Consensus       599 --------------~~l~t~~-H~~~V~sVa-s~~~~~lA-sgs~  626 (630)
                                    +++.++. |...|++++ ++++..++ +++.
T Consensus       298 ~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~  342 (357)
T 3i2n_A          298 KDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSF  342 (357)
T ss_dssp             CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEET
T ss_pred             ccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecC
Confidence                          4677777 999999999 88887776 5553

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=99.97  E-value=8.6e-30  Score=263.52  Aligned_cols=260  Identities=14%  Similarity=0.060  Sum_probs=203.3

Q ss_pred             eeeecCccceeEEEeec---ceEeecCCCccEecccCCCCceeEEec-CCccCCEEEEEEcCCCCeEEeecCCCC-----
Q 006825          333 EMCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKKK-GSWFKSIRTVASSVTGHKERRSSDERD-----  403 (630)
Q Consensus       333 ~~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~lk-~gH~~~V~sVAfSpdG~~lasgS~D~d-----  403 (630)
                      ..+.+|...|..++|+|   .|++++.|++++ +||+.+++....+. .+|...|.+++|+|+|+++++++.++.     
T Consensus        46 ~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~-vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d  124 (372)
T 1k8k_C           46 HELKEHNGQVTGVDWAPDSNRIVTCGTDRNAY-VWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICY  124 (372)
T ss_dssp             EEEECCSSCEEEEEEETTTTEEEEEETTSCEE-EEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEE
T ss_pred             eeecCCCCcccEEEEeCCCCEEEEEcCCCeEE-EEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEE
Confidence            66779999999999998   799999999999 99999988655543 389999999999999999999998871     


Q ss_pred             --Cc--------cccCCcceEEEeecCCCe--EEEecCCcEEEEEeCCCCc-------------ccceeeeeEecccCcC
Q 006825          404 --TS--------SEKGGRRSSSATDDSQDV--SFHGQERVRVRQYGKSCKD-------------LTALYKCQEIQAHNGS  458 (630)
Q Consensus       404 --t~--------s~~gh~~~Vsa~~~s~d~--l~Sgs~Dg~VriWd~~~~e-------------l~~~~~v~tL~gHt~~  458 (630)
                        ..        ...+|...|.++.+++++  +++++.|+.|++||+....             .....++..+.+|...
T Consensus       125 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (372)
T 1k8k_C          125 FEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGW  204 (372)
T ss_dssp             EETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSC
T ss_pred             ecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCe
Confidence              11        136788999999999887  8999999999999964221             1122356788899999


Q ss_pred             EEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccc--cc
Q 006825          459 IWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGR--SI  536 (630)
Q Consensus       459 V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~--~~  536 (630)
                      |.+++|+|++++|++++.|++|++||+.+++.+..+     ..|...|.+++|+|++.+++++ .|+.|.+|+...  ..
T Consensus       205 v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~  278 (372)
T 1k8k_C          205 VHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATL-----ASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGK  278 (372)
T ss_dssp             EEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEE-----ECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTE
T ss_pred             EEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEE-----ccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCce
Confidence            999999999999999999999999999999888775     6788899999999999988888 899998888755  21


Q ss_pred             --cccccccC-----ccccccEEE---eCCCCce------EEe-ccCCCCEEEEEEc-CC----CeEEEEECCCcEEEEe
Q 006825          537 --NRKSLSLD-----HMVVPETVF---ALSDKPI------CSF-QGHLDDVLDLSWS-KS----QHLLSSSMDKTVRLWH  594 (630)
Q Consensus       537 --~~~s~s~d-----~~i~~~~Vw---dlsgk~l------~tL-~GHs~~V~sLafS-Pd----~~LaSgS~DgtVrIWD  594 (630)
                        ........     .......+|   +..++..      ..+ .+|...|++++|+ ++    .+|+||+.||+|+|||
T Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~  358 (372)
T 1k8k_C          279 LSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWD  358 (372)
T ss_dssp             EEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEE
T ss_pred             EEEeeccCccccchhhhcchhhhhhhcccccccccCccccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEE
Confidence              11111000     000001233   3334433      444 4999999999977 44    5999999999999999


Q ss_pred             CCCCc
Q 006825          595 LSSKT  599 (630)
Q Consensus       595 l~tg~  599 (630)
                      +.+++
T Consensus       359 ~~~~~  363 (372)
T 1k8k_C          359 VRSLE  363 (372)
T ss_dssp             HHHHH
T ss_pred             ecChh
Confidence            87654

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.97  E-value=2.4e-29  Score=254.46  Aligned_cols=250  Identities=14%  Similarity=0.120  Sum_probs=208.1

Q ss_pred             CCceeEEEEcCCCceEeeecceeeecCccceeEEEeec---ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEE
Q 006825          312 DGTWKKVKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVAS  388 (630)
Q Consensus       312 dg~~~~l~dv~TG~~lt~eef~~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAf  388 (630)
                      |+ ..++||+.||+.+.   ...+.+|...|.+|+|+|   .|++|+.|++++ +||+.+++.+.++. +|...+.++  
T Consensus        44 D~-tV~iWd~~tg~~~~---~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~-iw~~~~~~~~~~~~-~h~~~~~~~--  115 (318)
T 4ggc_A           44 DN-SVYLWSASSGDILQ---LLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQ-LWDVQQQKRLRNMT-SHSARVGSL--  115 (318)
T ss_dssp             TT-EEEEEETTTCCEEE---EEECCSTTCCEEEEEECTTSSEEEEEETTSEEE-EEETTTTEEEEEEE-CCSSCEEEE--
T ss_pred             CC-EEEEEECCCCCEEE---EEEecCCCCeEEEEEECCCCCEEEEEECCCcEE-EeecCCceeEEEec-CccceEEEe--
Confidence            44 36788888888771   123457889999999999   799999999999 99999999999999 999999755  


Q ss_pred             cCCCCeEEeecCCCC------------CccccCCcceEEEeecCCCe--EEEecCCcEEEEEeCCCCcccceeeeeEecc
Q 006825          389 SVTGHKERRSSDERD------------TSSEKGGRRSSSATDDSQDV--SFHGQERVRVRQYGKSCKDLTALYKCQEIQA  454 (630)
Q Consensus       389 SpdG~~lasgS~D~d------------t~s~~gh~~~Vsa~~~s~d~--l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~g  454 (630)
                      ++++..+++++.+..            ...+.+|...+....+.+.+  +++++.|++|++||..+++... ........
T Consensus       116 ~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~-~~~~~~~~  194 (318)
T 4ggc_A          116 SWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGW-VPLQTFTQ  194 (318)
T ss_dssp             EEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBS-CCSEEECC
T ss_pred             ecCCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccc-cceeeecc
Confidence            556689999988861            12367899999999988887  8999999999999998765332 23456778


Q ss_pred             cCcCEEEEEEccCCC---EEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEee--CCCeeee
Q 006825          455 HNGSIWSIKFSLDGR---YLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKH--LDNHLEK  529 (630)
Q Consensus       455 Ht~~V~sVaFSpDG~---~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs--~Dg~I~i  529 (630)
                      |.+.|.+++++|++.   .+++++.|++|+|||.........      ..+...+..+.|+|++..+++++  .|+.|  
T Consensus       195 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~------~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i--  266 (318)
T 4ggc_A          195 HQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSA------VDAHSQVCSILWSPHYKELISGHGFAQNQL--  266 (318)
T ss_dssp             CCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEE------EECSSCEEEEEEETTTTEEEEEECTTTCCE--
T ss_pred             cCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccccc------ccceeeeeeeeecccccceEEEEEcCCCEE--
Confidence            999999999999765   335678999999999988776655      35667789999999998887754  78888  


Q ss_pred             ecccccccccccccCccccccEEEeC-CCCceEEeccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCCCc
Q 006825          530 KRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKT  599 (630)
Q Consensus       530 ~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg~  599 (630)
                                           ++|++ +++++.+|.||.+.|++|+|+|+ .+|+|||.|++|||||+.+..
T Consensus       267 ---------------------~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~~d  317 (318)
T 4ggc_A          267 ---------------------VIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELD  317 (318)
T ss_dssp             ---------------------EEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCCC
T ss_pred             ---------------------EEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCC
Confidence                                 88988 78999999999999999999999 999999999999999997643

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=99.97  E-value=2e-29  Score=289.66  Aligned_cols=263  Identities=13%  Similarity=0.080  Sum_probs=234.7

Q ss_pred             ecceeeecCccceeEEEeec---ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCC----
Q 006825          330 EEFEMCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDER----  402 (630)
Q Consensus       330 eef~~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~----  402 (630)
                      +...++.||+..|.+++|+|   .|++|+.|++|+ +||+.+|+.+.++. +|...|++++|+|+|+++++++.|+    
T Consensus         4 ~~~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~-iwd~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~v   81 (814)
T 3mkq_A            4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVE-IWNYETQVEVRSIQ-VTETPVRAGKFIARKNWIIVGSDDFRIRV   81 (814)
T ss_dssp             CCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEE-EEETTTTEEEEEEE-CCSSCEEEEEEEGGGTEEEEEETTSEEEE
T ss_pred             ccceeeecCCCceEEEEECCCCCEEEEEeCCCEEE-EEECCCCceEEEEe-cCCCcEEEEEEeCCCCEEEEEeCCCeEEE
Confidence            34478899999999999999   799999999999 99999999999999 9999999999999999999999887    


Q ss_pred             ---CC----ccccCCcceEEEeecCCCe--EEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEcc-CCCEEE
Q 006825          403 ---DT----SSEKGGRRSSSATDDSQDV--SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSL-DGRYLA  472 (630)
Q Consensus       403 ---dt----~s~~gh~~~Vsa~~~s~d~--l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSp-DG~~LA  472 (630)
                         .+    ..+.+|...|.++.|++++  +++++.|++|++|++..+.    ...+.+.+|...|.+++|+| ++++|+
T Consensus        82 w~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~----~~~~~~~~~~~~v~~~~~~p~~~~~l~  157 (814)
T 3mkq_A           82 FNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNW----ALEQTFEGHEHFVMCVAFNPKDPSTFA  157 (814)
T ss_dssp             EETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTS----EEEEEEECCSSCEEEEEEETTEEEEEE
T ss_pred             EECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCc----eEEEEEcCCCCcEEEEEEEcCCCCEEE
Confidence               22    2267899999999999988  8999999999999987652    25678899999999999999 899999


Q ss_pred             EEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECC--CCCEEEEeeCCCeeeeecccccccccccccCcccccc
Q 006825          473 SAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSP--EPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPE  550 (630)
Q Consensus       473 SgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSp--dg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~  550 (630)
                      +++.|++|++||+.++.....+    ...+...+..++|+|  ++.++++++.|+.|                       
T Consensus       158 ~~~~dg~v~vwd~~~~~~~~~~----~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i-----------------------  210 (814)
T 3mkq_A          158 SGCLDRTVKVWSLGQSTPNFTL----TTGQERGVNYVDYYPLPDKPYMITASDDLTI-----------------------  210 (814)
T ss_dssp             EEETTSEEEEEETTCSSCSEEE----ECCCTTCCCEEEECCSTTCCEEEEECTTSEE-----------------------
T ss_pred             EEeCCCeEEEEECCCCcceeEE----ecCCCCCEEEEEEEECCCCCEEEEEeCCCEE-----------------------
Confidence            9999999999999888776665    245558899999999  99999999999999                       


Q ss_pred             EEEeC-CCCceEEeccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCCCcEEEEEe-cCCceEEEE-cCCCc--EEEEe
Q 006825          551 TVFAL-SDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYDISLV-DRLML--RFAYG  624 (630)
Q Consensus       551 ~Vwdl-sgk~l~tL~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg~~l~t~~-H~~~V~sVa-s~~~~--~lAsg  624 (630)
                      .+|++ +++++.++.+|...|.+++|+|+ .+|++++.||+|++||+.+++++..+. |...|++++ .|.+.  .++++
T Consensus       211 ~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  290 (814)
T 3mkq_A          211 KIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASG  290 (814)
T ss_dssp             EEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCSSSSEEEEEECTTCGGGEEEEE
T ss_pred             EEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCcEEEEEEccCCCceEEEEE
Confidence            88887 67889999999999999999999 899999999999999999999999998 999999999 77765  46655


Q ss_pred             c
Q 006825          625 A  625 (630)
Q Consensus       625 s  625 (630)
                      .
T Consensus       291 ~  291 (814)
T 3mkq_A          291 F  291 (814)
T ss_dssp             E
T ss_pred             e
Confidence            4

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=99.97  E-value=6.3e-31  Score=274.56  Aligned_cols=250  Identities=12%  Similarity=-0.030  Sum_probs=195.1

Q ss_pred             eeeecCccceeEEEeec---ceEeecCCCccEecccCCCC--ceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccc
Q 006825          333 EMCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGG--GMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSE  407 (630)
Q Consensus       333 ~~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG--~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~  407 (630)
                      +.+..|...|.+++|+|   .|++|+.|++++ +||+.++  +.+.+++ +|...|.+++|+|+|++|+           
T Consensus         5 ~~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~-iw~~~~~~~~~~~~~~-~h~~~v~~~~~s~~~~~l~-----------   71 (377)
T 3dwl_C            5 QVLHILPKPSYEHAFNSQRTEFVTTTATNQVE-LYEQDGNGWKHARTFS-DHDKIVTCVDWAPKSNRIV-----------   71 (377)
T ss_dssp             EEEEECSSCCSCCEECSSSSEEECCCSSSCBC-EEEEETTEEEECCCBC-CCSSCEEEEEECTTTCCEE-----------
T ss_pred             eeEecCCCcEEEEEECCCCCEEEEecCCCEEE-EEEccCCceEEEEEEe-cCCceEEEEEEeCCCCEEE-----------
Confidence            34455677899999998   799999999999 9999998  7778888 9999999999999988775           


Q ss_pred             cCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcC
Q 006825          408 KGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVE  487 (630)
Q Consensus       408 ~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~t  487 (630)
                                        +++.|++|++|++..++  .......+.+|...|++++|+|++++|++|+.|++|++||+.+
T Consensus        72 ------------------s~s~d~~v~vwd~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~  131 (377)
T 3dwl_C           72 ------------------TCSQDRNAYVYEKRPDG--TWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQ  131 (377)
T ss_dssp             ------------------EEETTSSEEEC--------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC--
T ss_pred             ------------------EEeCCCeEEEEEcCCCC--ceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECC
Confidence                              45667789999998764  1224567889999999999999999999999999999999988


Q ss_pred             Cce---eeeeecccccC-cccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeC---CCCce
Q 006825          488 SER---KGELLEKQEDG-HLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL---SDKPI  560 (630)
Q Consensus       488 g~~---~~~l~~~~~~g-h~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl---sgk~l  560 (630)
                      ++.   ...+     .+ |...|.+++|+|++.+|++++.|+.|++|+............       ..|..   .++++
T Consensus       132 ~~~~~~~~~~-----~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-------~~~~~~~~~~~~~  199 (377)
T 3dwl_C          132 ENDWWVSKHL-----KRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEA-------SVWGSRLPFNTVC  199 (377)
T ss_dssp             ---CCCCEEE-----CSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCS-------CSSCSCCCEEEEE
T ss_pred             cccceeeeEe-----ecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccc-------cccccccchhhhh
Confidence            763   4443     44 999999999999999999999999997776543111000000       11111   24566


Q ss_pred             EEeccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCCCcE----EEEEe-cCCceEEEE-cCCCcEEEEeccee
Q 006825          561 CSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTC----LKIFS-HSDYDISLV-DRLMLRFAYGAFLN  628 (630)
Q Consensus       561 ~tL~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg~~----l~t~~-H~~~V~sVa-s~~~~~lAsgs~~n  628 (630)
                      .++ +|...|++++|+|+ .+|++++.|++|+|||+.++++    +.++. |...|++++ ++++..+++++...
T Consensus       200 ~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~  273 (377)
T 3dwl_C          200 AEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNYS  273 (377)
T ss_dssp             ECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEESSSS
T ss_pred             hcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCCc
Confidence            677 99999999999999 9999999999999999999987    77777 999999999 88889998886543

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.97  E-value=1.8e-29  Score=267.72  Aligned_cols=238  Identities=14%  Similarity=0.023  Sum_probs=185.7

Q ss_pred             eeecCccceeEEEeec-c-----------eEeecCCCccEecccCCCCceeEEec--------CCccCCEEEEEEcCCCC
Q 006825          334 MCVGHSPIVQELMRRQ-N-----------VEEGNKDSFDLNNNGSSGGGMKSKKK--------GSWFKSIRTVASSVTGH  393 (630)
Q Consensus       334 ~l~GHs~~V~~Lafs~-~-----------laSgS~D~tvr~vWD~~tG~~~~~lk--------~gH~~~V~sVAfSpdG~  393 (630)
                      .|.+|...|.++++.+ .           |++|+.|+++| +|++.++.....+.        ..+...+++|+|||||+
T Consensus        68 ~l~~~~~~v~s~~~~~~~~~~g~~~~~~~l~s~~~d~~~r-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~  146 (365)
T 4h5i_A           68 ALEDNDDSPTAIDASKGIILVGCNENSTKITQGKGNKHLR-KFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGT  146 (365)
T ss_dssp             ECCTTSCCCCEEEEETTEEEEECCCCHHHHHHTSCCCCEE-EEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSS
T ss_pred             EccCCCCceEEEEeCCCEEEEEECCCccEEEEecCCCcEE-EEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCC
Confidence            4678999999999876 3           34456678888 88876654322211        13556689999999998


Q ss_pred             eEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEE
Q 006825          394 KERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLAS  473 (630)
Q Consensus       394 ~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LAS  473 (630)
                      +++.                           ++++.|++|++||+.+.+     ++.++. |.+.|++|+|+|||++|++
T Consensus       147 ~la~---------------------------as~~~d~~i~iwd~~~~~-----~~~~~~-~~~~V~~v~fspdg~~l~s  193 (365)
T 4h5i_A          147 VAAI---------------------------ASSKVPAIMRIIDPSDLT-----EKFEIE-TRGEVKDLHFSTDGKVVAY  193 (365)
T ss_dssp             CEEE---------------------------EESCSSCEEEEEETTTTE-----EEEEEE-CSSCCCEEEECTTSSEEEE
T ss_pred             EEEE---------------------------EECCCCCEEEEeECCCCc-----EEEEeC-CCCceEEEEEccCCceEEe
Confidence            8763                           466778999999998764     345554 8889999999999999999


Q ss_pred             EeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEE
Q 006825          474 AGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVF  553 (630)
Q Consensus       474 gS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vw  553 (630)
                      ++.| .+++|+..++..+....   ..+|...|.+++|+|++.++++++.++...++.                   .+|
T Consensus       194 ~s~~-~~~~~~~~~~~~~~~~~---~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i-------------------~~~  250 (365)
T 4h5i_A          194 ITGS-SLEVISTVTGSCIARKT---DFDKNWSLSKINFIADDTVLIAASLKKGKGIVL-------------------TKI  250 (365)
T ss_dssp             ECSS-CEEEEETTTCCEEEEEC---CCCTTEEEEEEEEEETTEEEEEEEESSSCCEEE-------------------EEE
T ss_pred             ccce-eEEEEEeccCcceeeee---cCCCCCCEEEEEEcCCCCEEEEEecCCcceeEE-------------------eec
Confidence            9855 56677777776554422   467888999999999999999998887321100                   455


Q ss_pred             eC-CC----CceEEeccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCCCcEEEEEe--cCCceEEEE-cCCCcEEEEe
Q 006825          554 AL-SD----KPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS--HSDYDISLV-DRLMLRFAYG  624 (630)
Q Consensus       554 dl-sg----k~l~tL~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg~~l~t~~--H~~~V~sVa-s~~~~~lAsg  624 (630)
                      ++ ..    .....+.+|...|++|+|+|+ ++||+|+.|++|+|||+.++++++++.  |...|++|+ +|++.+|+++
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~  330 (365)
T 4h5i_A          251 SIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASV  330 (365)
T ss_dssp             EEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEE
T ss_pred             ccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEE
Confidence            55 22    234567899999999999999 999999999999999999999999874  999999999 9999999999


Q ss_pred             ccee
Q 006825          625 AFLN  628 (630)
Q Consensus       625 s~~n  628 (630)
                      +.++
T Consensus       331 S~D~  334 (365)
T 4h5i_A          331 SAAN  334 (365)
T ss_dssp             ETTS
T ss_pred             eCCC
Confidence            8663

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.97  E-value=3.1e-30  Score=288.85  Aligned_cols=266  Identities=8%  Similarity=-0.083  Sum_probs=200.9

Q ss_pred             eEEEEcCCCceEeeecceeeecCccceeEEEeec---------ceEeecCCCccEecccCCCCce-----------eEEe
Q 006825          316 KKVKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQ---------NVEEGNKDSFDLNNNGSSGGGM-----------KSKK  375 (630)
Q Consensus       316 ~~l~dv~TG~~lt~eef~~l~GHs~~V~~Lafs~---------~laSgS~D~tvr~vWD~~tG~~-----------~~~l  375 (630)
                      .++|++.+++.. .....++.+|...|..|+|+|         .||+|+.|++|+ +||+.++..           ..++
T Consensus       185 I~iWd~~~~~~~-~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~Dgtvr-lWd~~~~~~~~~~~~~~~~p~~~l  262 (524)
T 2j04_B          185 IQIFKMNTSTLH-CVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTIN-FLEIIDNATDVHVFKMCEKPSLTL  262 (524)
T ss_dssp             EEEEEEETTTCC-EEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEE-EEECCCCSSSSSEEECCCSCSEEE
T ss_pred             EEEEEccCCCCC-ceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEE-EEEcCCCccccccceeecCceEEE
Confidence            446665555431 111245678899999999997         599999999999 999987753           2466


Q ss_pred             cCCccCCEEEEEEcCCCCeEEeecCCC-----C--Cc-----cccCCcceEEEe--ecCCC---eEEEecCCcEEEEEeC
Q 006825          376 KGSWFKSIRTVASSVTGHKERRSSDER-----D--TS-----SEKGGRRSSSAT--DDSQD---VSFHGQERVRVRQYGK  438 (630)
Q Consensus       376 k~gH~~~V~sVAfSpdG~~lasgS~D~-----d--t~-----s~~gh~~~Vsa~--~~s~d---~l~Sgs~Dg~VriWd~  438 (630)
                      . +|...|.+|+|++++ +|++|+.|+     +  +.     .+.+|...|.++  .++++   .+++++.|++|++||+
T Consensus       263 ~-~h~~~v~sv~~s~~~-~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~  340 (524)
T 2j04_B          263 S-LADSLITTFDFLSPT-TVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNP  340 (524)
T ss_dssp             C-CTTTCEEEEEESSSS-EEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECG
T ss_pred             E-cCCCCEEEEEecCCC-eEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEEC
Confidence            7 899999999999864 899999987     2  11     267899999998  57775   3899999999999998


Q ss_pred             CCCcccceeeeeEecccCc--CEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCC
Q 006825          439 SCKDLTALYKCQEIQAHNG--SIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPT  516 (630)
Q Consensus       439 ~~~el~~~~~v~tL~gHt~--~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~  516 (630)
                      ...+     ++.++.+|..  .|++|+|+|+++.|++++.|++|+|||+.++.++..+     .+|...|.+|+|+|+++
T Consensus       341 ~~~~-----~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l-----~gH~~~V~sva~Sp~g~  410 (524)
T 2j04_B          341 KDIA-----TTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPL-----VSRETTITAIGVSRLHP  410 (524)
T ss_dssp             GGHH-----HHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEE-----EECSSCEEEEECCSSCC
T ss_pred             CCCC-----cccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceee-----ecCCCceEEEEeCCCCC
Confidence            7653     3456777764  5899999999999999999999999999998877764     68999999999999999


Q ss_pred             EEEEeeCCCeeeeeccccccc----------------ccccccCccccccEEEe--------CCCCceEEeccCCCCEEE
Q 006825          517 SLSPKHLDNHLEKKRRGRSIN----------------RKSLSLDHMVVPETVFA--------LSDKPICSFQGHLDDVLD  572 (630)
Q Consensus       517 ~lasgs~Dg~I~i~~~~~~~~----------------~~s~s~d~~i~~~~Vwd--------lsgk~l~tL~GHs~~V~s  572 (630)
                      +|++|+.|++|++|+......                ...++++....  .+|+        .++.++.++.+|...|.+
T Consensus       411 ~l~Sgs~Dgtv~lwd~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~~--~~~~~~~~~~~~~~g~~~~~l~gh~~~V~~  488 (524)
T 2j04_B          411 MVLAGSADGSLIITNAARRLLHGIKNSSATQKSLRLWKWDYSIKDDKY--RIDSSYEVYPLTVNDVSKAKIDAHGINITC  488 (524)
T ss_dssp             BCEEEETTTEEECCBSCSSTTTCC------CCCCEEEECBCCSSSCEE--EECCCCCCCC-------------CCCSCCC
T ss_pred             eEEEEECCCEEEEEechHhhccccccCccceeeeEEEEeccCCCCCeE--EccCCceecccccCCcceeeecCCCceEEE
Confidence            999999999999998644211                11122222211  2232        247788899999999999


Q ss_pred             EEEcCC-C---eEEEEECCCcEEEEeCCC
Q 006825          573 LSWSKS-Q---HLLSSSMDKTVRLWHLSS  597 (630)
Q Consensus       573 LafSPd-~---~LaSgS~DgtVrIWDl~t  597 (630)
                      |+|+|+ .   +||+|+.||+||||++.-
T Consensus       489 Vafsp~~~~~~~lAsg~~~g~vrlw~l~~  517 (524)
T 2j04_B          489 TKWNETSAGGKCYAFSNSAGLLTLEYLSL  517 (524)
T ss_dssp             EEECCSTTTTTEEEEECTTSEEEEEECSC
T ss_pred             EECCCCCCccHHHHhhccCceEEEEEccc
Confidence            999998 4   899999999999999863

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.97  E-value=1e-28  Score=298.03  Aligned_cols=319  Identities=15%  Similarity=0.099  Sum_probs=260.5

Q ss_pred             ccEEEEECCCCcEEEEeeecCCCceeEEEEcCCCceEeeecceeeecCccceeEEEeec---ceEeecCCCccEecccCC
Q 006825          291 QGCLIKNLDNGKEFVVNEIQEDGTWKKVKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSS  367 (630)
Q Consensus       291 ~~~~I~~LddG~~~~v~e~~~dg~~~~l~dv~TG~~lt~eef~~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~  367 (630)
                      .+..+.--.+|+.+++..  .||. .++|++.+|+.+     .++.+|...|.+++|+|   .|++|+.|++++ +||+.
T Consensus       617 ~v~~~~~s~~~~~l~s~~--~d~~-i~vw~~~~~~~~-----~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~-vwd~~  687 (1249)
T 3sfz_A          617 AVYHACFSQDGQRIASCG--ADKT-LQVFKAETGEKL-----LDIKAHEDEVLCCAFSSDDSYIATCSADKKVK-IWDSA  687 (1249)
T ss_dssp             CEEEEEECTTSSEEEEEE--TTSC-EEEEETTTCCEE-----EEECCCSSCEEEEEECTTSSEEEEEETTSEEE-EEETT
T ss_pred             cEEEEEECCCCCEEEEEe--CCCe-EEEEECCCCCEE-----EEeccCCCCEEEEEEecCCCEEEEEeCCCeEE-EEECC
Confidence            344555556888777654  3554 779999999988     88899999999999998   799999999999 99999


Q ss_pred             CCceeEEecCCccCCEEEEEEcC--CCCeEEeecCCC-------CC----ccccCCcceEEEeecCCCe--EEEecCCcE
Q 006825          368 GGGMKSKKKGSWFKSIRTVASSV--TGHKERRSSDER-------DT----SSEKGGRRSSSATDDSQDV--SFHGQERVR  432 (630)
Q Consensus       368 tG~~~~~lk~gH~~~V~sVAfSp--dG~~lasgS~D~-------dt----~s~~gh~~~Vsa~~~s~d~--l~Sgs~Dg~  432 (630)
                      +|+.+.++. +|...|.+++|+|  ++.++++++.|.       .+    ....+|...|.++.+++++  +++++.|++
T Consensus       688 ~~~~~~~~~-~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~  766 (1249)
T 3sfz_A          688 TGKLVHTYD-EHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGT  766 (1249)
T ss_dssp             TCCEEEEEE-CCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSSE
T ss_pred             CCceEEEEc-CCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEECCCe
Confidence            999999999 9999999999999  555899999886       12    2267899999999999987  999999999


Q ss_pred             EEEEeCCCCcccce-------------------------------------------------eeeeE-ecccCcCEEEE
Q 006825          433 VRQYGKSCKDLTAL-------------------------------------------------YKCQE-IQAHNGSIWSI  462 (630)
Q Consensus       433 VriWd~~~~el~~~-------------------------------------------------~~v~t-L~gHt~~V~sV  462 (630)
                      |++||+..++....                                                 ..+.. ..+|...|.++
T Consensus       767 v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~  846 (1249)
T 3sfz_A          767 LRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYC  846 (1249)
T ss_dssp             EEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEE
T ss_pred             EEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEE
Confidence            99999865431100                                                 01111 23899999999


Q ss_pred             EEccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccc------
Q 006825          463 KFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSI------  536 (630)
Q Consensus       463 aFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~------  536 (630)
                      +|+|+++++++++.|++|++||+.++..+..+     .+|...|.+++|+|++.++++++.|+.|++|+.....      
T Consensus       847 ~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~-----~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~  921 (1249)
T 3sfz_A          847 DFSPYDHLAVIALSQYCVELWNIDSRLKVADC-----RGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIV  921 (1249)
T ss_dssp             EECSSTTEEEEECSSSCEEEEETTTTEEEEEE-----CCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSS
T ss_pred             EEcCCCCEEEEEeCCCeEEEEEcCCCceeeec-----CCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeec
Confidence            99999999999999999999999998887774     7999999999999999999999999999999854210      


Q ss_pred             -------------------------------------------cccccccCcccc-------ccEEEeC-CCCceEEecc
Q 006825          537 -------------------------------------------NRKSLSLDHMVV-------PETVFAL-SDKPICSFQG  565 (630)
Q Consensus       537 -------------------------------------------~~~s~s~d~~i~-------~~~Vwdl-sgk~l~tL~G  565 (630)
                                                                 ....++++....       ...+|++ +++.+..+.+
T Consensus       922 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~ 1001 (1249)
T 3sfz_A          922 LKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVG 1001 (1249)
T ss_dssp             EEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCC
T ss_pred             ccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeeccc
Confidence                                                       001111211111       1178998 7888999999


Q ss_pred             CCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCCCcEEEEEecCCceEEEE-cCCCcEEEEe
Q 006825          566 HLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYDISLV-DRLMLRFAYG  624 (630)
Q Consensus       566 Hs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg~~l~t~~H~~~V~sVa-s~~~~~lAsg  624 (630)
                      |...|++++|+|+ .+|++++.|++|++||+.+++++....|...|.+++ .+....++.+
T Consensus      1002 h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~ 1062 (1249)
T 3sfz_A         1002 HKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDSRLLSWS 1062 (1249)
T ss_dssp             CSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEECCBCCSSCEEEEEECSSSEEEEEE
T ss_pred             CCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCceEEEecCCCcEEEEEEcCCCcEEEEE
Confidence            9999999999999 999999999999999999999886666999999999 6655544443

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=99.97  E-value=4.1e-30  Score=274.66  Aligned_cols=290  Identities=11%  Similarity=0.040  Sum_probs=212.3

Q ss_pred             CCceEeeecceee-ecCccceeEEEeec----ceEeecCCCccEecccCCC---CceeE-EecCCccCCEEEEEEcCCCC
Q 006825          323 TGRQLTIEEFEMC-VGHSPIVQELMRRQ----NVEEGNKDSFDLNNNGSSG---GGMKS-KKKGSWFKSIRTVASSVTGH  393 (630)
Q Consensus       323 TG~~lt~eef~~l-~GHs~~V~~Lafs~----~laSgS~D~tvr~vWD~~t---G~~~~-~lk~gH~~~V~sVAfSpdG~  393 (630)
                      +|+.+     ..+ .||...|.+|+|+|    .|++|+.|++|+ +||+.+   +.... .+..+|...|.+|+|+|+++
T Consensus        51 ~g~~~-----~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~-vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~  124 (437)
T 3gre_A           51 RGKLI-----ATLMENEPNSITSSAVSPGETPYLITGSDQGVIK-IWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNFD  124 (437)
T ss_dssp             CCCEE-----EEECTTTTSCEEEEEEECSSSCEEEEEETTSEEE-EEEHHHHHTTCCCSCSEEEECSSCEEEEEECTTSS
T ss_pred             cceEE-----eeeccCCCCceEEEEECCCCCCEEEEecCCceEE-EeECcccccCcccceeeeccCCCCEEEEEEeCCCC
Confidence            45666     666 89999999999999    699999999999 999877   54221 22236999999999999999


Q ss_pred             eEEeecCCC-----CCc-----c----ccC------------CcceEEEee--cCCCe--EEEecCCcEEEEEeCCCCcc
Q 006825          394 KERRSSDER-----DTS-----S----EKG------------GRRSSSATD--DSQDV--SFHGQERVRVRQYGKSCKDL  443 (630)
Q Consensus       394 ~lasgS~D~-----dt~-----s----~~g------------h~~~Vsa~~--~s~d~--l~Sgs~Dg~VriWd~~~~el  443 (630)
                      ++++++.|+     +..     .    ..+            +...+.++.  +.+++  +++++.|++|++||+.+++ 
T Consensus       125 ~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~-  203 (437)
T 3gre_A          125 AFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLE-  203 (437)
T ss_dssp             EEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCC-
T ss_pred             EEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCe-
Confidence            999999987     211     0    111            223333333  33343  8999999999999998764 


Q ss_pred             cceeeeeEecc--cCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEEC----CCCCE
Q 006825          444 TALYKCQEIQA--HNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGS----PEPTS  517 (630)
Q Consensus       444 ~~~~~v~tL~g--Ht~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafS----pdg~~  517 (630)
                          ++..+.+  |.+.|++++|+|++++|++|+.|++|+|||+.+++.+..+    ..+|...|.+++++    |++.+
T Consensus       204 ----~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~----~~~~~~~v~~~~~~~~~s~~~~~  275 (437)
T 3gre_A          204 ----RLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSW----SFGDHAPITHVEVCQFYGKNSVI  275 (437)
T ss_dssp             ----EEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEE----BCTTCEEEEEEEECTTTCTTEEE
T ss_pred             ----eeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEE----ecCCCCceEEEEeccccCCCccE
Confidence                4677888  8999999999999999999999999999999998887775    23677789999554    56889


Q ss_pred             EEEeeCCCeeeeecccccccccccccCccccccEEEeCCCCce--EEecc--CCCCEEEEEEcCCCeEEEEECCCcEEEE
Q 006825          518 LSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPI--CSFQG--HLDDVLDLSWSKSQHLLSSSMDKTVRLW  593 (630)
Q Consensus       518 lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l--~tL~G--Hs~~V~sLafSPd~~LaSgS~DgtVrIW  593 (630)
                      +++++.|+.|++|+.........+...........|...++.+  .++.+  |...|++++|++..+|++|+.|++|++|
T Consensus       276 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~~w  355 (437)
T 3gre_A          276 VVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVSNDKILLTDEATSSIVMF  355 (437)
T ss_dssp             EEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEETTEEEEEEGGGTEEEEE
T ss_pred             EEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEECCceEEEecCCCCeEEEE
Confidence            9999999999777765432222211111000000111111111  12445  8888999999944899999999999999


Q ss_pred             eCCCCcEEEEEe--------------------------------------cCCceEEEE-cCC--CcEEEEecce
Q 006825          594 HLSSKTCLKIFS--------------------------------------HSDYDISLV-DRL--MLRFAYGAFL  627 (630)
Q Consensus       594 Dl~tg~~l~t~~--------------------------------------H~~~V~sVa-s~~--~~~lAsgs~~  627 (630)
                      |+.+++++..+.                                      |.+.|++|+ .+.  ...+++++.+
T Consensus       356 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~d  430 (437)
T 3gre_A          356 SLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNS  430 (437)
T ss_dssp             ETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEEEEEEETT
T ss_pred             ECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceEEEEEcCC
Confidence            999998777665                                      789999999 443  6677777543

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=99.97  E-value=7.5e-29  Score=266.96  Aligned_cols=260  Identities=16%  Similarity=0.164  Sum_probs=225.5

Q ss_pred             eeeecCccc-eeEEEeec-ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCC-------C
Q 006825          333 EMCVGHSPI-VQELMRRQ-NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDER-------D  403 (630)
Q Consensus       333 ~~l~GHs~~-V~~Lafs~-~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~-------d  403 (630)
                      ..+.||... +.++.|.+ .+++|+.|++|+ +||+.+++.+.++. +|...|.+++|++++ ++++++.|+       +
T Consensus       115 ~~l~~h~~~v~~~~~~~~~~l~sgs~dg~i~-vwd~~~~~~~~~~~-~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~  191 (464)
T 3v7d_B          115 TTLRGHMTSVITCLQFEDNYVITGADDKMIR-VYDSINKKFLLQLS-GHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIK  191 (464)
T ss_dssp             EEEECCSSSCEEEEEEETTEEEEEETTSCEE-EEETTTTEEEEEEC-CCSSCEEEEEECSTT-EEEEEETTSCEEEEETT
T ss_pred             EEEcCCCCCcEEEEEECCCEEEEEcCCCcEE-EEECCCCcEEEEEe-CCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECC
Confidence            567899877 47788877 899999999999 99999999999999 999999999999998 899999887       2


Q ss_pred             C----ccccCCcceEEEeecC--CCe--EEEecCCcEEEEEeCCCCcccce------------------eeeeEecccCc
Q 006825          404 T----SSEKGGRRSSSATDDS--QDV--SFHGQERVRVRQYGKSCKDLTAL------------------YKCQEIQAHNG  457 (630)
Q Consensus       404 t----~s~~gh~~~Vsa~~~s--~d~--l~Sgs~Dg~VriWd~~~~el~~~------------------~~v~tL~gHt~  457 (630)
                      +    ..+.+|...|.++++.  +++  +++++.|++|++|++........                  ..+..+.+|..
T Consensus       192 ~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (464)
T 3v7d_B          192 KGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMA  271 (464)
T ss_dssp             TTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSS
T ss_pred             CCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccc
Confidence            2    2267899999999887  343  99999999999999986642211                  13567899999


Q ss_pred             CEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeeccccccc
Q 006825          458 SIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSIN  537 (630)
Q Consensus       458 ~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~  537 (630)
                      .|.++  ++++++|++|+.|++|++||+.+++.+..+     .+|...|.+++|+|++.++++++.|+.|          
T Consensus       272 ~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~l~sg~~dg~i----------  334 (464)
T 3v7d_B          272 SVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYIL-----SGHTDRIYSTIYDHERKRCISASMDTTI----------  334 (464)
T ss_dssp             CEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEE-----CCCSSCEEEEEEETTTTEEEEEETTSCE----------
T ss_pred             eEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEe-----cCCCCCEEEEEEcCCCCEEEEEeCCCcE----------
Confidence            99988  568999999999999999999999888774     7899999999999999999999999999          


Q ss_pred             ccccccCccccccEEEeC-CCCceEEeccCCCCEEEEEEcCCCeEEEEECCCcEEEEeCCCCcEEEEEecCCceEEEE-c
Q 006825          538 RKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYDISLV-D  615 (630)
Q Consensus       538 ~~s~s~d~~i~~~~Vwdl-sgk~l~tL~GHs~~V~sLafSPd~~LaSgS~DgtVrIWDl~tg~~l~t~~H~~~V~sVa-s  615 (630)
                                   ++|++ +++++.++.+|...|.+++|++ .+|++++.|++|++||+.+++....+.|...+..++ .
T Consensus       335 -------------~vwd~~~~~~~~~~~~h~~~v~~~~~~~-~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~  400 (464)
T 3v7d_B          335 -------------RIWDLENGELMYTLQGHTALVGLLRLSD-KFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFY  400 (464)
T ss_dssp             -------------EEEETTTTEEEEEECCCSSCEEEEEECS-SEEEEEETTSEEEEEETTTCCEEEEEECTTCCCEEEEE
T ss_pred             -------------EEEECCCCcEEEEEeCCCCcEEEEEEcC-CEEEEEeCCCcEEEEECCCCceeeeecCCCCccEEEEE
Confidence                         88888 7899999999999999999986 899999999999999999999888887777777777 7


Q ss_pred             CCCcEEEEecc
Q 006825          616 RLMLRFAYGAF  626 (630)
Q Consensus       616 ~~~~~lAsgs~  626 (630)
                      +.+..+++++.
T Consensus       401 ~~~~~l~~~~d  411 (464)
T 3v7d_B          401 VSDNILVSGSE  411 (464)
T ss_dssp             ECSSEEEEEET
T ss_pred             eCCCEEEEecC
Confidence            77778887763

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.97  E-value=1.9e-29  Score=263.16  Aligned_cols=274  Identities=17%  Similarity=0.101  Sum_probs=211.5

Q ss_pred             EEEcCCCceEeeecceeeecCccceeEEEeec----ceEeecCCCccEecccCCCCceeEEec------------CCccC
Q 006825          318 VKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQ----NVEEGNKDSFDLNNNGSSGGGMKSKKK------------GSWFK  381 (630)
Q Consensus       318 l~dv~TG~~lt~eef~~l~GHs~~V~~Lafs~----~laSgS~D~tvr~vWD~~tG~~~~~lk------------~gH~~  381 (630)
                      +|+..+++..     ..+.+|...|.+|+|+|    .|++|+.|++++ +||+.++.....+.            .+|..
T Consensus        27 v~~~~~~~~~-----~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~-iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (408)
T 4a11_B           27 VLGLELNKDR-----DVERIHGGGINTLDIEPVEGRYMLSGGSDGVIV-LYDLENSSRQSYYTCKAVCSIGRDHPDVHRY  100 (408)
T ss_dssp             HHTEEECTTE-----EECCCCSSCEEEEEECTTTCCEEEEEETTSCEE-EEECCCCSSSSCEEECEEEEECTTCTTCCSS
T ss_pred             eeccccCcce-----eeeeccCCcEEEEEEecCCCCEEEEEcCCCeEE-EEECCCCcccceEeccccccccccccccCCC
Confidence            4555555555     67789999999999997    699999999999 99999987665543            26999


Q ss_pred             CEEEEEEcC-CCCeEEeecCCC-----C--Ccc---ccCCcceEEEeecCC---C--eEEEecCCcEEEEEeCCCCcccc
Q 006825          382 SIRTVASSV-TGHKERRSSDER-----D--TSS---EKGGRRSSSATDDSQ---D--VSFHGQERVRVRQYGKSCKDLTA  445 (630)
Q Consensus       382 ~V~sVAfSp-dG~~lasgS~D~-----d--t~s---~~gh~~~Vsa~~~s~---d--~l~Sgs~Dg~VriWd~~~~el~~  445 (630)
                      .|.+++|+| ++.++++++.|+     +  +..   ...+...+.++.+.+   +  .+++++.++.|++||+..++   
T Consensus       101 ~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~---  177 (408)
T 4a11_B          101 SVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGS---  177 (408)
T ss_dssp             CEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSC---
T ss_pred             cEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceeccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcc---
Confidence            999999999 788999999887     1  111   222444445554443   3  48999999999999998764   


Q ss_pred             eeeeeEecccCcCEEEEEEccCCC-EEEEEeCCCcEEEEECcCCceeeeee-----------cccccCcccceEEEEECC
Q 006825          446 LYKCQEIQAHNGSIWSIKFSLDGR-YLASAGEDCVIHVWQVVESERKGELL-----------EKQEDGHLNMLLLANGSP  513 (630)
Q Consensus       446 ~~~v~tL~gHt~~V~sVaFSpDG~-~LASgS~DgtIrVWDl~tg~~~~~l~-----------~~~~~gh~~~V~svafSp  513 (630)
                        .+..+.+|...|.+++|+|+++ +|++|+.|+.|++||+.++......+           .....+|...|.+++|+|
T Consensus       178 --~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  255 (408)
T 4a11_B          178 --CSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTS  255 (408)
T ss_dssp             --CCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECT
T ss_pred             --eeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcC
Confidence              4677899999999999999998 69999999999999998765222211           111257889999999999


Q ss_pred             CCCEEEEeeCCCeeeeecccccccccc---------------------------cccCccccccEEEeC-CCCceEEecc
Q 006825          514 EPTSLSPKHLDNHLEKKRRGRSINRKS---------------------------LSLDHMVVPETVFAL-SDKPICSFQG  565 (630)
Q Consensus       514 dg~~lasgs~Dg~I~i~~~~~~~~~~s---------------------------~s~d~~i~~~~Vwdl-sgk~l~tL~G  565 (630)
                      ++.++++++.|+.|++|+.........                           ...++.+   .+|++ +++++..+.+
T Consensus       256 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i---~v~d~~~~~~~~~~~~  332 (408)
T 4a11_B          256 DGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTI---AVYTVYSGEQITMLKG  332 (408)
T ss_dssp             TSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEE---EEEETTTCCEEEEECC
T ss_pred             CCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEE---EEEECcCCcceeeecc
Confidence            999999999999999999765322110                           1112222   78998 8899999999


Q ss_pred             CCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCCCcEEEEEe
Q 006825          566 HLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS  605 (630)
Q Consensus       566 Hs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg~~l~t~~  605 (630)
                      |...|++++|+|+ .+|++++.||+|+|||+.+++++....
T Consensus       333 ~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~  373 (408)
T 4a11_B          333 HYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPVPDDD  373 (408)
T ss_dssp             CSSCEEEEEEETTTTEEEEEETTSCEEEEEECC--------
T ss_pred             CCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCccCCCC
Confidence            9999999999999 999999999999999999998887665

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=99.97  E-value=3.6e-29  Score=258.84  Aligned_cols=262  Identities=8%  Similarity=-0.054  Sum_probs=219.9

Q ss_pred             eeecCccceeEEEeec---ceEeecCCCccEecccCCCCc--eeEEecCCccCCEEEEEEcCCCCeEEeecCCC-----C
Q 006825          334 MCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGG--MKSKKKGSWFKSIRTVASSVTGHKERRSSDER-----D  403 (630)
Q Consensus       334 ~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~--~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~-----d  403 (630)
                      .+..|...|.+++|+|   .|++|+.|++++ +||+.+++  .+.++. +|...|.+++|+|+|+++++++.|+     +
T Consensus         3 ~~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~-i~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd   80 (372)
T 1k8k_C            3 YHSFLVEPISCHAWNKDRTQIAICPNNHEVH-IYEKSGNKWVQVHELK-EHNGQVTGVDWAPDSNRIVTCGTDRNAYVWT   80 (372)
T ss_dssp             EEESCSSCCCEEEECTTSSEEEEECSSSEEE-EEEEETTEEEEEEEEE-CCSSCEEEEEEETTTTEEEEEETTSCEEEEE
T ss_pred             eecccCCCeEEEEECCCCCEEEEEeCCCEEE-EEeCCCCcEEeeeeec-CCCCcccEEEEeCCCCEEEEEcCCCeEEEEE
Confidence            3456999999999998   799999999999 99999998  888888 9999999999999999999999887     1


Q ss_pred             --Cc------cccCCcceEEEeecCCCe--EEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEE
Q 006825          404 --TS------SEKGGRRSSSATDDSQDV--SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLAS  473 (630)
Q Consensus       404 --t~------s~~gh~~~Vsa~~~s~d~--l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LAS  473 (630)
                        +.      ...+|...|.++.+++++  +++++.|+.|++|+....+... .......+|...|.+++|+|++++|++
T Consensus        81 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~  159 (372)
T 1k8k_C           81 LKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWW-VCKHIKKPIRSTVLSLDWHPNSVLLAA  159 (372)
T ss_dssp             EETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEE-EEEEECTTCCSCEEEEEECTTSSEEEE
T ss_pred             CCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcce-eeeeeecccCCCeeEEEEcCCCCEEEE
Confidence              11      147788999999999887  8999999999999987664211 122334789999999999999999999


Q ss_pred             EeCCCcEEEEECc------------------CCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeeccccc
Q 006825          474 AGEDCVIHVWQVV------------------ESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRS  535 (630)
Q Consensus       474 gS~DgtIrVWDl~------------------tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~  535 (630)
                      ++.|++|++||+.                  .++.+..     +.+|...|.+++|+|++.+|++++.|+.|        
T Consensus       160 ~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~v~~~~~~~~~~~l~~~~~d~~i--------  226 (372)
T 1k8k_C          160 GSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFE-----SSSSCGWVHGVCFSANGSRVAWVSHDSTV--------  226 (372)
T ss_dssp             EETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEE-----CCCCSSCEEEEEECSSSSEEEEEETTTEE--------
T ss_pred             EcCCCCEEEEEcccccccccccccccccccchhhheEe-----cCCCCCeEEEEEECCCCCEEEEEeCCCEE--------
Confidence            9999999999964                  4555555     36889999999999999999999999999        


Q ss_pred             ccccccccCccccccEEEeC-CCCceEEeccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCC--CcE-----------
Q 006825          536 INRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSS--KTC-----------  600 (630)
Q Consensus       536 ~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~t--g~~-----------  600 (630)
                                     ++|++ +++++..+.+|...|++++|+|+ .+|++| .|+.|+||++.+  ++.           
T Consensus       227 ---------------~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~  290 (372)
T 1k8k_C          227 ---------------CLADADKKMAVATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQ  290 (372)
T ss_dssp             ---------------EEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--
T ss_pred             ---------------EEEECCCCceeEEEccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCcccc
Confidence                           88888 78899999999999999999999 555555 999999999988  421           


Q ss_pred             ---------------------E------EEE--ecCCceEEEE--cCCC---cEEEEecce
Q 006825          601 ---------------------L------KIF--SHSDYDISLV--DRLM---LRFAYGAFL  627 (630)
Q Consensus       601 ---------------------l------~t~--~H~~~V~sVa--s~~~---~~lAsgs~~  627 (630)
                                           .      ..+  .|...|++++  .+++   ..+++++.+
T Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~D  351 (372)
T 1k8k_C          291 SSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMD  351 (372)
T ss_dssp             ------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETT
T ss_pred             chhhhcchhhhhhhcccccccccCccccccccccccCCcceeEEecCCCcceeeEEEecCC
Confidence                                 0      223  2999999998  4665   788888754

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=99.97  E-value=6.8e-29  Score=254.81  Aligned_cols=270  Identities=13%  Similarity=0.065  Sum_probs=204.4

Q ss_pred             eEEEEcCCCceEeeecceeeecCccceeEEEeec------ceEeecCCCccEecccCCCCc-eeEEecCCccCCEEEEE-
Q 006825          316 KKVKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQ------NVEEGNKDSFDLNNNGSSGGG-MKSKKKGSWFKSIRTVA-  387 (630)
Q Consensus       316 ~~l~dv~TG~~lt~eef~~l~GHs~~V~~Lafs~------~laSgS~D~tvr~vWD~~tG~-~~~~lk~gH~~~V~sVA-  387 (630)
                      .++|++.+++...    ....+|...|.+++|+|      .|++|+.|++++ +||+.+++ .+..++ +|...|.+++ 
T Consensus        46 v~iw~~~~~~~~~----~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~-iwd~~~~~~~~~~~~-~~~~~v~~~~~  119 (357)
T 3i2n_A           46 IQLYEIQHGDLKL----LREIEKAKPIKCGTFGATSLQQRYLATGDFGGNLH-IWNLEAPEMPVYSVK-GHKEIINAIDG  119 (357)
T ss_dssp             EEEEEECSSSEEE----EEEEEESSCEEEEECTTCCTTTCCEEEEETTSCEE-EECTTSCSSCSEEEC-CCSSCEEEEEE
T ss_pred             EEEEeCCCCcccc----eeeecccCcEEEEEEcCCCCCCceEEEecCCCeEE-EEeCCCCCccEEEEE-ecccceEEEee
Confidence            5577777766551    12347899999999986      499999999999 99999998 888888 9999999994 


Q ss_pred             -----EcCCCCeEEeecCCC-----CCcc-------ccCC----cceEEEee----cCCCe--EEEecCCcEEEEEeCCC
Q 006825          388 -----SSVTGHKERRSSDER-----DTSS-------EKGG----RRSSSATD----DSQDV--SFHGQERVRVRQYGKSC  440 (630)
Q Consensus       388 -----fSpdG~~lasgS~D~-----dt~s-------~~gh----~~~Vsa~~----~s~d~--l~Sgs~Dg~VriWd~~~  440 (630)
                           |+|+|+++++++.|+     +...       ...|    ...+.++.    +++++  +++++.|+.|++||+..
T Consensus       120 ~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~  199 (357)
T 3i2n_A          120 IGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRN  199 (357)
T ss_dssp             ESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTT
T ss_pred             ccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECcc
Confidence                 578999999999887     1111       2222    33677776    55665  89999999999999987


Q ss_pred             CcccceeeeeEecccCcCEEEEEEcc---CCCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCC-
Q 006825          441 KDLTALYKCQEIQAHNGSIWSIKFSL---DGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPT-  516 (630)
Q Consensus       441 ~el~~~~~v~tL~gHt~~V~sVaFSp---DG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~-  516 (630)
                      .+.      .....|...|.+++|+|   ++.+|++++.|+.|++||+.+++....+......+|...|.+++|+|++. 
T Consensus       200 ~~~------~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  273 (357)
T 3i2n_A          200 MAL------RWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRE  273 (357)
T ss_dssp             TEE------EEEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEE
T ss_pred             Cce------eeecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCc
Confidence            642      34577999999999999   99999999999999999998877665542222348999999999999998 


Q ss_pred             EEEEeeCCCeeeeecccccccccccccCccccccEEEeCCCCceEEeccCCCCEEEEEEcCC-CeEE-EEECCCcEEEEe
Q 006825          517 SLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLL-SSSMDKTVRLWH  594 (630)
Q Consensus       517 ~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL~GHs~~V~sLafSPd-~~La-SgS~DgtVrIWD  594 (630)
                      ++++++.|+.|++|+............+.....   ...+.+++.++.+|...|++++|+|+ .+|+ +++.|++|+|||
T Consensus       274 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~---~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~  350 (357)
T 3i2n_A          274 LFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMG---VAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLI  350 (357)
T ss_dssp             EEEEEETTSEEEEEEEECCSCC--CCTTSCCCC---CCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEEEEE
T ss_pred             EEEEEeCCCcEEEeecCCCcccccccCCCCccc---cccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEE
Confidence            899999999997777654322211111111100   00011567889999999999999999 7787 899999999999


Q ss_pred             CCCCcE
Q 006825          595 LSSKTC  600 (630)
Q Consensus       595 l~tg~~  600 (630)
                      +.+.+.
T Consensus       351 ~~~~~~  356 (357)
T 3i2n_A          351 VTKLNK  356 (357)
T ss_dssp             ECC---
T ss_pred             CCCccc
Confidence            987654

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=99.97  E-value=1e-28  Score=261.06  Aligned_cols=258  Identities=11%  Similarity=0.062  Sum_probs=209.2

Q ss_pred             CCcEEEEeeecCCCceeEEEEcCCCceEeeecceeeecCccceeEEEeec---ceEeecCCCccEecccCCCCceeEEec
Q 006825          300 NGKEFVVNEIQEDGTWKKVKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKKK  376 (630)
Q Consensus       300 dG~~~~v~e~~~dg~~~~l~dv~TG~~lt~eef~~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~lk  376 (630)
                      +|+.+++...  || ..++|+..+++.+     ..+.+| ..+...+|++   .|++|+.|++++ +||+.+++.+..++
T Consensus        67 ~g~~l~~~~~--d~-~v~i~d~~~~~~~-----~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~-iwd~~~~~~~~~~~  136 (420)
T 3vl1_A           67 VGSHLYKARL--DG-HDFLFNTIIRDGS-----KMLKRA-DYTAVDTAKLQMRRFILGTTEGDIK-VLDSNFNLQREIDQ  136 (420)
T ss_dssp             EETTEEEEEE--TT-EEEEEECCSEETT-----TTSCSC-CEEEEEEECSSSCEEEEEETTSCEE-EECTTSCEEEEETT
T ss_pred             cCCeEEEEEc--CC-cEEEEEeccccee-----eEEecC-CceEEEEEecCCCEEEEEECCCCEE-EEeCCCcceeeecc
Confidence            4555665444  44 3679999887766     556666 5555566776   799999999999 99999999988887


Q ss_pred             CCccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccC
Q 006825          377 GSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHN  456 (630)
Q Consensus       377 ~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt  456 (630)
                       +|...|.+++|+|+|++++                             +++.|++|++||+..++     .++.+.+|.
T Consensus       137 -~h~~~v~~~~~~~~~~~l~-----------------------------s~s~d~~i~iwd~~~~~-----~~~~~~~h~  181 (420)
T 3vl1_A          137 -AHVSEITKLKFFPSGEALI-----------------------------SSSQDMQLKIWSVKDGS-----NPRTLIGHR  181 (420)
T ss_dssp             -SSSSCEEEEEECTTSSEEE-----------------------------EEETTSEEEEEETTTCC-----CCEEEECCS
T ss_pred             -cccCccEEEEECCCCCEEE-----------------------------EEeCCCeEEEEeCCCCc-----CceEEcCCC
Confidence             9999999999999988774                             55677899999998765     467889999


Q ss_pred             cCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccc---------------------eEEEEECCCC
Q 006825          457 GSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNM---------------------LLLANGSPEP  515 (630)
Q Consensus       457 ~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~---------------------V~svafSpdg  515 (630)
                      ..|++++|+|++++|++++.|++|++||+.+++.+..+..  ...|...                     +..++|+|++
T Consensus       182 ~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~  259 (420)
T 3vl1_A          182 ATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNR--KENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYG  259 (420)
T ss_dssp             SCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECB--TTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTT
T ss_pred             CcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeec--CCCCCCCccEEEEecCCcceeeecccCcccceEEcCCC
Confidence            9999999999999999999999999999999988777521  1233333                     4445568999


Q ss_pred             CEEEEeeCCCeeeeecccccccccccccCccccccEEEeC-CCCceEEe-ccCCCCEEEEEEcCC-C-eEEEEECCCcEE
Q 006825          516 TSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSF-QGHLDDVLDLSWSKS-Q-HLLSSSMDKTVR  591 (630)
Q Consensus       516 ~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL-~GHs~~V~sLafSPd-~-~LaSgS~DgtVr  591 (630)
                      .++++++.|+.|                       ++|++ +++.+..+ .+|...|++++|+|+ . +|++|+.|++|+
T Consensus       260 ~~l~~~~~dg~i-----------------------~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~  316 (420)
T 3vl1_A          260 KYVIAGHVSGVI-----------------------TVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLA  316 (420)
T ss_dssp             EEEEEEETTSCE-----------------------EEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEE
T ss_pred             CEEEEEcCCCeE-----------------------EEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEE
Confidence            999999999999                       78887 56666665 458899999999999 6 999999999999


Q ss_pred             EEeCCCCcE-EEEEe--cCCceEEEEcCCCcEEEEecce
Q 006825          592 LWHLSSKTC-LKIFS--HSDYDISLVDRLMLRFAYGAFL  627 (630)
Q Consensus       592 IWDl~tg~~-l~t~~--H~~~V~sVas~~~~~lAsgs~~  627 (630)
                      |||+.++++ +..+.  |...|+++..+.+..+++++.+
T Consensus       317 vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~d  355 (420)
T 3vl1_A          317 QWDLRSPECPVGEFLINEGTPINNVYFAAGALFVSSGFD  355 (420)
T ss_dssp             EEETTCTTSCSEEEEESTTSCEEEEEEETTEEEEEETTT
T ss_pred             EEEcCCCcCchhhhhccCCCCceEEEeCCCCEEEEecCC
Confidence            999999754 66676  7888999986667788888654

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.97  E-value=1.7e-29  Score=268.87  Aligned_cols=257  Identities=11%  Similarity=0.110  Sum_probs=211.9

Q ss_pred             ecCccceeEEEeec---ceEeecCCCccEecccCCCCc-----------eeEEecCCcc------------CCEEEEEEc
Q 006825          336 VGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGG-----------MKSKKKGSWF------------KSIRTVASS  389 (630)
Q Consensus       336 ~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~-----------~~~~lk~gH~------------~~V~sVAfS  389 (630)
                      ..|...|.+|+|+|   .||+|+.|++|+ +||+.+++           ....++ +|.            ..|.+|+|+
T Consensus        25 ~~~~~~V~~v~~s~~g~~la~g~~dg~v~-iw~~~~~~~~~~~~~~~~~~~~~~~-~h~~~~~~~~~~~~~~~V~~l~~~  102 (447)
T 3dw8_B           25 VAEADIISTVEFNHSGELLATGDKGGRVV-IFQQEQENKIQSHSRGEYNVYSTFQ-SHEPEFDYLKSLEIEEKINKIRWL  102 (447)
T ss_dssp             CCGGGSEEEEEECSSSSEEEEEETTSEEE-EEEECC-----CCCCCCEEEEEEEE-CCCCEEEGGGTEEECCCCCEEEEC
T ss_pred             ccccCcEEEEEECCCCCEEEEEcCCCeEE-EEEecCCCCCCcccccceeEecccc-cccccccccccccccCceEEEEEc
Confidence            45789999999999   799999999999 99999887           577888 898            889999999


Q ss_pred             CCC--CeEEeecCCC-----CCcc----------------------------------------------ccCCcceEEE
Q 006825          390 VTG--HKERRSSDER-----DTSS----------------------------------------------EKGGRRSSSA  416 (630)
Q Consensus       390 pdG--~~lasgS~D~-----dt~s----------------------------------------------~~gh~~~Vsa  416 (630)
                      |++  .++++++.|+     +...                                              ..+|...|.+
T Consensus       103 ~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~  182 (447)
T 3dw8_B          103 PQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINS  182 (447)
T ss_dssp             CCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCE
T ss_pred             CCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEE
Confidence            998  7899999887     1110                                              3689999999


Q ss_pred             eecCCCe--EEEecCCcEEEEEeCCCCcccceeeee-------EecccCcCEEEEEEccCC-CEEEEEeCCCcEEEEECc
Q 006825          417 TDDSQDV--SFHGQERVRVRQYGKSCKDLTALYKCQ-------EIQAHNGSIWSIKFSLDG-RYLASAGEDCVIHVWQVV  486 (630)
Q Consensus       417 ~~~s~d~--l~Sgs~Dg~VriWd~~~~el~~~~~v~-------tL~gHt~~V~sVaFSpDG-~~LASgS~DgtIrVWDl~  486 (630)
                      +++++++  +++| .|++|++||+.....    .+.       .+.+|...|++++|+|++ ++|++|+.|++|+|||+.
T Consensus       183 ~~~~~~~~~l~s~-~d~~i~iwd~~~~~~----~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~  257 (447)
T 3dw8_B          183 ISINSDYETYLSA-DDLRINLWHLEITDR----SFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMR  257 (447)
T ss_dssp             EEECTTSSEEEEE-CSSEEEEEETTEEEE----EEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETT
T ss_pred             EEEcCCCCEEEEe-CCCeEEEEECCCCCc----eeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECc
Confidence            9999987  7787 899999999973321    222       467999999999999998 999999999999999999


Q ss_pred             CCce----eeeeecccccCccc------------ceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCcccccc
Q 006825          487 ESER----KGELLEKQEDGHLN------------MLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPE  550 (630)
Q Consensus       487 tg~~----~~~l~~~~~~gh~~------------~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~  550 (630)
                      ++..    ...+     .+|..            .|.+++|+|++++|++++. +.|                       
T Consensus       258 ~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v-----------------------  308 (447)
T 3dw8_B          258 ASALCDRHSKLF-----EEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSV-----------------------  308 (447)
T ss_dssp             TCSSSCTTCEEE-----CCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEE-----------------------
T ss_pred             CCccccceeeEe-----ccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeE-----------------------
Confidence            8875    3443     55554            8999999999999999988 999                       


Q ss_pred             EEEeC-C-CCceEEeccCCCC---------------EEEEEEcCC-CeEEEEECCCcEEEEeCCCCcEEEEEe-------
Q 006825          551 TVFAL-S-DKPICSFQGHLDD---------------VLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-------  605 (630)
Q Consensus       551 ~Vwdl-s-gk~l~tL~GHs~~---------------V~sLafSPd-~~LaSgS~DgtVrIWDl~tg~~l~t~~-------  605 (630)
                      ++|++ . ++++.++.+|...               +..++|+|+ .+|++|+.|++|+|||+.+++++....       
T Consensus       309 ~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~  388 (447)
T 3dw8_B          309 KVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKP  388 (447)
T ss_dssp             EEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCT
T ss_pred             EEEeCCCCccccceeeccccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeeeccccccc
Confidence            78887 3 7788888888642               334999999 999999999999999999998875221       


Q ss_pred             --------------------------cCCceEEEE-cCCCcEEEEeccee
Q 006825          606 --------------------------HSDYDISLV-DRLMLRFAYGAFLN  628 (630)
Q Consensus       606 --------------------------H~~~V~sVa-s~~~~~lAsgs~~n  628 (630)
                                                +...|.+++ +|.+..||+++..+
T Consensus       389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~  438 (447)
T 3dw8_B          389 RTVLKPRKVCASGKRKKDEISVDSLDFNKKILHTAWHPKENIIAVATTNN  438 (447)
T ss_dssp             TCBCCCCCEECSSCCCTTCEEGGGCCTTSCCCEEEECSSSSEEEEECSSC
T ss_pred             ccccCCccccccCCcccccccccccccCCceeEEEECCCCCEEEEEecce
Confidence                                      245688889 99999999987654

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=99.97  E-value=1.8e-29  Score=272.20  Aligned_cols=267  Identities=11%  Similarity=0.048  Sum_probs=192.9

Q ss_pred             eEEEEcCCCceEeeecceeeecCccceeEEEeec----ceEeecCCCccEecccCCCCceeEEec-CCccCCEEEEEEcC
Q 006825          316 KKVKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQ----NVEEGNKDSFDLNNNGSSGGGMKSKKK-GSWFKSIRTVASSV  390 (630)
Q Consensus       316 ~~l~dv~TG~~lt~eef~~l~GHs~~V~~Lafs~----~laSgS~D~tvr~vWD~~tG~~~~~lk-~gH~~~V~sVAfSp  390 (630)
                      .++|++.+++..   .+..+.||...|.+|+|+|    .|+|||.|++|+ +||+.++....... ..+...|.+++|+|
T Consensus       144 i~lWd~~~~~~~---~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~-iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (435)
T 4e54_B          144 IMLWNFGIKDKP---TFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTR-LQDFKGNILRVFASSDTINIWFCSLDVSA  219 (435)
T ss_dssp             EEEECSSCCSCC---EEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEE-EEETTSCEEEEEECCSSCSCCCCCEEEET
T ss_pred             EEEEECCCCCce---eEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEE-EeeccCCceeEEeccCCCCccEEEEEECC
Confidence            345555444332   1245679999999999997    699999999999 99998765544333 13445678999999


Q ss_pred             CCCeEEeecCCC----------CCccccCCcceEEEeecCCCe---EEEecCCcEEEEEeCCCCcccceeeeeEecccCc
Q 006825          391 TGHKERRSSDER----------DTSSEKGGRRSSSATDDSQDV---SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNG  457 (630)
Q Consensus       391 dG~~lasgS~D~----------dt~s~~gh~~~Vsa~~~s~d~---l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~  457 (630)
                      +|+++++|+.|+          ....+.+|...|.++.|++++   +++++.|++|++||+...+...  ......+|..
T Consensus       220 ~~~~l~~g~~dg~i~~wd~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~--~~~~~~~h~~  297 (435)
T 4e54_B          220 SSRMVVTGDNVGNVILLNMDGKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKA--SFLYSLPHRH  297 (435)
T ss_dssp             TTTEEEEECSSSBEEEEESSSCBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSS--CCSBCCBCSS
T ss_pred             CCCEEEEEeCCCcEeeeccCcceeEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccc--eEEEeeeccc
Confidence            999999999887          123478899999999998765   7899999999999987654321  2234578999


Q ss_pred             CEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeecccc-cCcccceEEEEECCCCCEEEEee-CCCeeeeeccccc
Q 006825          458 SIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQE-DGHLNMLLLANGSPEPTSLSPKH-LDNHLEKKRRGRS  535 (630)
Q Consensus       458 ~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~-~gh~~~V~svafSpdg~~lasgs-~Dg~I~i~~~~~~  535 (630)
                      .|++|+|+|+|++|+|++.|++|+|||+.++.....+..... ......+..+.|+|++.++++++ .++.+.++.    
T Consensus       298 ~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~----  373 (435)
T 4e54_B          298 PVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCT----  373 (435)
T ss_dssp             CEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSS----
T ss_pred             cccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEE----
Confidence            999999999999999999999999999999887766531110 01111234567788877777654 333332111    


Q ss_pred             ccccccccCccccccEEEeC-CCCceEEec-cCCCCEEEE-EEcCC-CeEEEEECCCcEEEEeCCCCcEE
Q 006825          536 INRKSLSLDHMVVPETVFAL-SDKPICSFQ-GHLDDVLDL-SWSKS-QHLLSSSMDKTVRLWHLSSKTCL  601 (630)
Q Consensus       536 ~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL~-GHs~~V~sL-afSPd-~~LaSgS~DgtVrIWDl~tg~~l  601 (630)
                           ...+..+   ++|+. +++.+.++. +|...|.++ +|+|+ .+|++|+ |++|+||++++++..
T Consensus       374 -----~~~~~~i---~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~-d~~i~iW~~~~gk~r  434 (435)
T 4e54_B          374 -----PYELRTI---DVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAM-GYHILIWSQQEARTR  434 (435)
T ss_dssp             -----TTCCCCE---EEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEEC-SSEEEECCCC-----
T ss_pred             -----ecCCCEE---EEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEc-CCcEEEEECCcCeee
Confidence                 1112223   89998 788888875 688899887 69999 7888765 889999999998764

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=99.97  E-value=3.4e-28  Score=268.51  Aligned_cols=248  Identities=17%  Similarity=0.167  Sum_probs=214.4

Q ss_pred             eeeecCccc-eeEEEeec-----ceEeecCCCccEecccCCCC--------ceeEEecCCccCCEEEEEEcCCCCeEEee
Q 006825          333 EMCVGHSPI-VQELMRRQ-----NVEEGNKDSFDLNNNGSSGG--------GMKSKKKGSWFKSIRTVASSVTGHKERRS  398 (630)
Q Consensus       333 ~~l~GHs~~-V~~Lafs~-----~laSgS~D~tvr~vWD~~tG--------~~~~~lk~gH~~~V~sVAfSpdG~~lasg  398 (630)
                      ..+.+|... |.+++|+|     .|++|+.|++++ +||+.++        ..+.++. +|...|.+++|+|+|++++++
T Consensus        57 ~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~-vw~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~  134 (615)
T 1pgu_A           57 VQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVI-VWGWTFDKESNSVEVNVKSEFQ-VLAGPISDISWDFEGRRLCVV  134 (615)
T ss_dssp             EEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEE-EEEEEEEGGGTEEEEEEEEEEE-CCSSCEEEEEECTTSSEEEEE
T ss_pred             eEEecCCCceEEEEEECcCCCCCEEEEecCCCEEE-EEeCCCCcccccccccccchhh-cccccEEEEEEeCCCCEEEEe
Confidence            678899999 99999998     699999999999 9999866        6677777 899999999999999999999


Q ss_pred             cCCC---------C----CccccCCcceEEEeecCCCe---EEEecCCcEEEEEeCCCCcccceeeeeEecccCc---CE
Q 006825          399 SDER---------D----TSSEKGGRRSSSATDDSQDV---SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNG---SI  459 (630)
Q Consensus       399 S~D~---------d----t~s~~gh~~~Vsa~~~s~d~---l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~---~V  459 (630)
                      +.++         +    ...+.+|...|.++.|++++   +++++.|+.|++||....+     ++..+.+|..   .|
T Consensus       135 ~~~~~~~~~v~~~d~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~-----~~~~~~~~~~~~~~v  209 (615)
T 1pgu_A          135 GEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFK-----FSASDRTHHKQGSFV  209 (615)
T ss_dssp             ECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBE-----EEEEECSSSCTTCCE
T ss_pred             ccCCCCccEEEEEECCCcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcc-----eeeeecccCCCCceE
Confidence            8773         1    22377899999999999985   8999999999999987654     5678999999   99


Q ss_pred             EEEEEccC-CCEEEEEeCCCcEEEEECcCCceeeeeeccccc---CcccceEEEEECCCCCEEEEeeCCCeeeeeccccc
Q 006825          460 WSIKFSLD-GRYLASAGEDCVIHVWQVVESERKGELLEKQED---GHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRS  535 (630)
Q Consensus       460 ~sVaFSpD-G~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~---gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~  535 (630)
                      ++++|+|+ +++|++++.|++|++||+.+++.+..+    ..   +|...|.+++|+ ++.++++++.|+.|        
T Consensus       210 ~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~----~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i--------  276 (615)
T 1pgu_A          210 RDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYI----EDDQEPVQGGIFALSWL-DSQKFATVGADATI--------  276 (615)
T ss_dssp             EEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEEC----CBTTBCCCSCEEEEEES-SSSEEEEEETTSEE--------
T ss_pred             EEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEe----cccccccCCceEEEEEc-CCCEEEEEcCCCcE--------
Confidence            99999999 999999999999999999999887764    14   899999999999 99999999999999        


Q ss_pred             ccccccccCccccccEEEeC-CCCceEEeccC----CCCEEEEEEcCCCeEEEEECCCcEEEEeCCCCcEEEEEe-cCCc
Q 006825          536 INRKSLSLDHMVVPETVFAL-SDKPICSFQGH----LDDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDY  609 (630)
Q Consensus       536 ~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL~GH----s~~V~sLafSPd~~LaSgS~DgtVrIWDl~tg~~l~t~~-H~~~  609 (630)
                                     ++|++ +++.+..+..|    ...+.++.|....+|++++.|++|++||+.+++++..+. |...
T Consensus       277 ---------------~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~  341 (615)
T 1pgu_A          277 ---------------RVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDEVLKTISGHNKG  341 (615)
T ss_dssp             ---------------EEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEETTEEEEEEEECCCSSC
T ss_pred             ---------------EEEECCCCcEEEEEcCCCCcccCceeEEEeCCCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCC
Confidence                           77777 56777777766    367788888633888888888889999888888888887 8888


Q ss_pred             eEEEEc
Q 006825          610 DISLVD  615 (630)
Q Consensus       610 V~sVas  615 (630)
                      |++++.
T Consensus       342 v~~~~~  347 (615)
T 1pgu_A          342 ITALTV  347 (615)
T ss_dssp             EEEEET
T ss_pred             EEEEEe
Confidence            888775

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=99.97  E-value=9.5e-29  Score=259.49  Aligned_cols=233  Identities=12%  Similarity=0.102  Sum_probs=186.3

Q ss_pred             eecCccceeEEEeec----ceEeecCCCccEecccCCCCceeEEecC--CccCCEEEEEEcCCCCeEEeecCCC-----C
Q 006825          335 CVGHSPIVQELMRRQ----NVEEGNKDSFDLNNNGSSGGGMKSKKKG--SWFKSIRTVASSVTGHKERRSSDER-----D  403 (630)
Q Consensus       335 l~GHs~~V~~Lafs~----~laSgS~D~tvr~vWD~~tG~~~~~lk~--gH~~~V~sVAfSpdG~~lasgS~D~-----d  403 (630)
                      +.+|...|.+++|+|    .|++++.|++++ +||+.+ ..+..+..  +|...|.+++|+|+|+++++++.|+     +
T Consensus       114 ~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~-iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d  191 (383)
T 3ei3_B          114 GMGPGDAITGMKFNQFNTNQLFVSSIRGATT-LRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLG  191 (383)
T ss_dssp             CCSTTCBEEEEEEETTEEEEEEEEETTTEEE-EEETTS-CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEE
T ss_pred             cCCcCCceeEEEeCCCCCCEEEEEeCCCEEE-EEECCC-CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEE
Confidence            357999999999988    699999999999 999985 55555551  3458899999999999999999887     1


Q ss_pred             -----CccccCCcceEEEeecCCCe---EEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEcc-CCCEEEEE
Q 006825          404 -----TSSEKGGRRSSSATDDSQDV---SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSL-DGRYLASA  474 (630)
Q Consensus       404 -----t~s~~gh~~~Vsa~~~s~d~---l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSp-DG~~LASg  474 (630)
                           ...+.+|...|.++.+++++   +++++.|++|++||+...+... .++..+ +|...|++++|+| +|++|+++
T Consensus       192 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~-~~~~~~-~~~~~v~~~~~s~~~~~~l~~~  269 (383)
T 3ei3_B          192 LDGHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKN-SYIAEM-PHEKPVNAAYFNPTDSTKLLTT  269 (383)
T ss_dssp             TTSCEEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTT-CEEEEE-ECSSCEEEEEECTTTSCEEEEE
T ss_pred             CCCCEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCccc-ceEEEe-cCCCceEEEEEcCCCCCEEEEE
Confidence                 12367899999999999885   8999999999999997643211 234444 7999999999999 99999999


Q ss_pred             eCCCcEEEEECcCCceeeeeecc--cccCcc----------cceEEEEECCCCCEEEEeeCCCeeeeecccccccccccc
Q 006825          475 GEDCVIHVWQVVESERKGELLEK--QEDGHL----------NMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLS  542 (630)
Q Consensus       475 S~DgtIrVWDl~tg~~~~~l~~~--~~~gh~----------~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s  542 (630)
                      +.|++|+|||+.++.....+...  ....|.          ..+..++|+|++++  +++.|+.|               
T Consensus       270 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i---------------  332 (383)
T 3ei3_B          270 DQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTI---------------  332 (383)
T ss_dssp             ESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCE---------------
T ss_pred             cCCCcEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeE---------------
Confidence            99999999999998877665311  111222          23444666677666  66678887               


Q ss_pred             cCccccccEEEeC-CCCceEEecc--CCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCC
Q 006825          543 LDHMVVPETVFAL-SDKPICSFQG--HLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSS  597 (630)
Q Consensus       543 ~d~~i~~~~Vwdl-sgk~l~tL~G--Hs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~t  597 (630)
                              ++|++ +++++.++.+  |...|..++|+|+ .+|++|+ |++|+|||+.+
T Consensus       333 --------~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~~  382 (383)
T 3ei3_B          333 --------DIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASGM-GFNILIWNRED  382 (383)
T ss_dssp             --------EEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred             --------EEEecCCCceeeeecCCCCCceEEEEEEecCccEEEEec-CCcEEEEecCC
Confidence                    88998 7889999987  5677888899999 8999997 99999999874

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.97  E-value=1.2e-28  Score=249.21  Aligned_cols=267  Identities=13%  Similarity=0.087  Sum_probs=208.1

Q ss_pred             eeeecCccceeEEEeec---ceEeecCCCccEecccCCCC----ceeEEecCCccCCEEEEEEcC--CCCeEEeecCCC-
Q 006825          333 EMCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGG----GMKSKKKGSWFKSIRTVASSV--TGHKERRSSDER-  402 (630)
Q Consensus       333 ~~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG----~~~~~lk~gH~~~V~sVAfSp--dG~~lasgS~D~-  402 (630)
                      ..+.||...|.+|+|+|   .|++|+.|++++ +||+.++    +....+. +|...|.+++|+|  +++++++++.|+ 
T Consensus         5 ~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~-iw~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~d~~~l~s~~~dg~   82 (351)
T 3f3f_A            5 PFDSGHDDLVHDVVYDFYGRHVATCSSDQHIK-VFKLDKDTSNWELSDSWR-AHDSSIVAIDWASPEYGRIIASASYDKT   82 (351)
T ss_dssp             CEECCCSSCEEEEEECSSSSEEEEEETTSEEE-EEEECSSSCCEEEEEEEE-CCSSCEEEEEECCGGGCSEEEEEETTSC
T ss_pred             ccCcccccceeEEEEcCCCCEEEEeeCCCeEE-EEECCCCCCcceecceec-cCCCcEEEEEEcCCCCCCEEEEEcCCCe
Confidence            35679999999999998   799999999999 9999887    4566777 8999999999999  699999999887 


Q ss_pred             ------CC-------------ccccCCcceEEEeecCCC--e--EEEecCCcEEEEEeCCCCcccceeee--------eE
Q 006825          403 ------DT-------------SSEKGGRRSSSATDDSQD--V--SFHGQERVRVRQYGKSCKDLTALYKC--------QE  451 (630)
Q Consensus       403 ------dt-------------~s~~gh~~~Vsa~~~s~d--~--l~Sgs~Dg~VriWd~~~~el~~~~~v--------~t  451 (630)
                            +.             ....+|...|.++.+.++  +  +++++.|++|++||+..++.......        ..
T Consensus        83 v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~  162 (351)
T 3f3f_A           83 VKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIP  162 (351)
T ss_dssp             EEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCC
T ss_pred             EEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccc
Confidence                  11             125689999999999987  5  89999999999999877653221111        01


Q ss_pred             ecccCcCEEEEEEccC---CCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCC----CEEEEeeCC
Q 006825          452 IQAHNGSIWSIKFSLD---GRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEP----TSLSPKHLD  524 (630)
Q Consensus       452 L~gHt~~V~sVaFSpD---G~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg----~~lasgs~D  524 (630)
                      ..+|...|.+++|+|+   +.+|++++.|+.+.+|+...+.....   ..+.+|...|.+++|+|++    .+|++++.|
T Consensus       163 ~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~d  239 (351)
T 3f3f_A          163 PANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVA---AKLPGHKSLIRSISWAPSIGRWYQLIATGCKD  239 (351)
T ss_dssp             CSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEE---EECCCCCSCEEEEEECCCSSCSSEEEEEEETT
T ss_pred             cCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeee---eecCCCCcceeEEEECCCCCCcceEEEEEcCC
Confidence            1378999999999997   99999999999998888877664222   1247899999999999998    899999999


Q ss_pred             CeeeeecccccccccccccC-----------------------ccccccEEEeC-CCCceEEeccCCCCEEEEEEcCC-C
Q 006825          525 NHLEKKRRGRSINRKSLSLD-----------------------HMVVPETVFAL-SDKPICSFQGHLDDVLDLSWSKS-Q  579 (630)
Q Consensus       525 g~I~i~~~~~~~~~~s~s~d-----------------------~~i~~~~Vwdl-sgk~l~tL~GHs~~V~sLafSPd-~  579 (630)
                      +.|++|+.............                       .......+|.. ..+++..+.+|...|++++|+|+ .
T Consensus       240 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~  319 (351)
T 3f3f_A          240 GRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGT  319 (351)
T ss_dssp             SCEEEEEEEECC---------------------------------------CCSEEEEEEEEECTTSSCEEEEEECSSSC
T ss_pred             CeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCCC
Confidence            99999997653211100000                       00001123333 34778889999999999999999 9


Q ss_pred             eEEEEECCCcEEEEeCCCCcEEEEE
Q 006825          580 HLLSSSMDKTVRLWHLSSKTCLKIF  604 (630)
Q Consensus       580 ~LaSgS~DgtVrIWDl~tg~~l~t~  604 (630)
                      +|++++.||+|+|||+.+++.+..+
T Consensus       320 ~l~s~~~dg~v~iw~~~~~~~~~~~  344 (351)
T 3f3f_A          320 ILSSAGDDGKVRLWKATYSNEFKCM  344 (351)
T ss_dssp             CEEEEETTSCEEEEEECTTSCEEEE
T ss_pred             EEEEecCCCcEEEEecCcCcchhhe
Confidence            9999999999999999988655444

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.97  E-value=5.4e-28  Score=244.57  Aligned_cols=257  Identities=15%  Similarity=0.160  Sum_probs=213.9

Q ss_pred             eeEEEeec-ceEeecCCCccEecccCCCCceeEEec-CCccCCEEEEEEcCCCCeEEeecCCC-------CC----cccc
Q 006825          342 VQELMRRQ-NVEEGNKDSFDLNNNGSSGGGMKSKKK-GSWFKSIRTVASSVTGHKERRSSDER-------DT----SSEK  408 (630)
Q Consensus       342 V~~Lafs~-~laSgS~D~tvr~vWD~~tG~~~~~lk-~gH~~~V~sVAfSpdG~~lasgS~D~-------dt----~s~~  408 (630)
                      .+.|+|++ .+++.+.|++|+ |||+.+|+++++++ .+|...|.+|+|+|+|+++++|+.|+       .+    ....
T Consensus        28 ~~~l~WS~~~~lAvg~D~tV~-iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~  106 (318)
T 4ggc_A           28 LNLVDWSSGNVLAVALDNSVY-LWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMT  106 (318)
T ss_dssp             CBCEEECTTSEEEEEETTEEE-EEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred             ceEEEECCCCEEEEEeCCEEE-EEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEec
Confidence            46788988 344445699999 99999999988776 27888999999999999999999998       22    2277


Q ss_pred             CCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCC
Q 006825          409 GGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVES  488 (630)
Q Consensus       409 gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg  488 (630)
                      +|...+.+..+....+++++.++.+++|+......    .+..+.+|...+..+.|++++++|++++.|++|+|||+.++
T Consensus       107 ~h~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~  182 (318)
T 4ggc_A          107 SHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEH----HVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPG  182 (318)
T ss_dssp             CCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSC----EEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCB
T ss_pred             CccceEEEeecCCCEEEEEecCCceEeeecCCCce----eEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCC
Confidence            89999999999888899999999999999876542    56788999999999999999999999999999999999987


Q ss_pred             ceeeeeecccccCcccceEEEEECCCCCEE---EEeeCCCeeeeecccccccccccccCccccccEEEeCCCCceEEecc
Q 006825          489 ERKGELLEKQEDGHLNMLLLANGSPEPTSL---SPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQG  565 (630)
Q Consensus       489 ~~~~~l~~~~~~gh~~~V~svafSpdg~~l---asgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL~G  565 (630)
                      +...... .....+...|..++++|++..+   ++++.+++|                       ++|+...........
T Consensus       183 ~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i-----------------------~lwd~~~~~~~~~~~  238 (318)
T 4ggc_A          183 EGGWVPL-QTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHI-----------------------RIWNVCSGACLSAVD  238 (318)
T ss_dssp             TTBSCCS-EEECCCCSCEEEEEECTTSTTEEEEEECTTTCEE-----------------------EEEETTTCCEEEEEE
T ss_pred             cccccce-eeecccCCceEEEEecCCCCcEEEEEecCCCCEE-----------------------EEEeccccccccccc
Confidence            6543322 1236777889999999986533   356677788                       788885555555566


Q ss_pred             CCCCEEEEEEcCC-CeEEEEE--CCCcEEEEeCCCCcEEEEEe-cCCceEEEE-cCCCcEEEEecce
Q 006825          566 HLDDVLDLSWSKS-QHLLSSS--MDKTVRLWHLSSKTCLKIFS-HSDYDISLV-DRLMLRFAYGAFL  627 (630)
Q Consensus       566 Hs~~V~sLafSPd-~~LaSgS--~DgtVrIWDl~tg~~l~t~~-H~~~V~sVa-s~~~~~lAsgs~~  627 (630)
                      |...|..+.|+|+ ..+++++  .|++|+|||+.++++++++. |.+.|++|+ +|++..|++++.+
T Consensus       239 ~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D  305 (318)
T 4ggc_A          239 AHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAAD  305 (318)
T ss_dssp             CSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETT
T ss_pred             ceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecC
Confidence            8889999999998 7776654  79999999999999999998 999999999 9999999998765

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=99.97  E-value=2.2e-29  Score=264.94  Aligned_cols=266  Identities=15%  Similarity=0.151  Sum_probs=220.0

Q ss_pred             CccceeEEEeec----ceEee----------cCCCccEecccCCCCceeE-EecCCccCCEEEEEEcCCCCeEEeecCCC
Q 006825          338 HSPIVQELMRRQ----NVEEG----------NKDSFDLNNNGSSGGGMKS-KKKGSWFKSIRTVASSVTGHKERRSSDER  402 (630)
Q Consensus       338 Hs~~V~~Lafs~----~laSg----------S~D~tvr~vWD~~tG~~~~-~lk~gH~~~V~sVAfSpdG~~lasgS~D~  402 (630)
                      +.+.|.+++|+|    .|++|          +.|++++ +||+.++.... .....|...|.+++|+|+|++|++++.|+
T Consensus        11 ~~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~-iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg   89 (416)
T 2pm9_A           11 EFSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLE-LWSLLAADSEKPIASLQVDSKFNDLDWSHNNKIIAGALDNG   89 (416)
T ss_dssp             EEEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCE-EEESSSGGGCSCSCCCCCSSCEEEEEECSSSSCEEEEESSS
T ss_pred             hhhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEE-EEEccCCCCCcEEEEEecCCceEEEEECCCCCeEEEEccCC
Confidence            445688899988    58888          8999999 99999886321 11226999999999999999999998886


Q ss_pred             -------CC--------ccccCCcceEEEeecCCC-e--EEEecCCcEEEEEeCCCCccc----ceeeeeEecccCcCEE
Q 006825          403 -------DT--------SSEKGGRRSSSATDDSQD-V--SFHGQERVRVRQYGKSCKDLT----ALYKCQEIQAHNGSIW  460 (630)
Q Consensus       403 -------dt--------~s~~gh~~~Vsa~~~s~d-~--l~Sgs~Dg~VriWd~~~~el~----~~~~v~tL~gHt~~V~  460 (630)
                             ..        ..+.+|...|.++.++++ .  +++++.|++|++||+...+..    .......+.+|...|.
T Consensus        90 ~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~  169 (416)
T 2pm9_A           90 SLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVI  169 (416)
T ss_dssp             CEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCC
T ss_pred             eEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCee
Confidence                   22        126789999999999986 3  999999999999999876410    1122344578999999


Q ss_pred             EEEEccC-CCEEEEEeCCCcEEEEECcCCceeeeeec-ccccCcccceEEEEECCCC-CEEEEeeCCC---eeeeecccc
Q 006825          461 SIKFSLD-GRYLASAGEDCVIHVWQVVESERKGELLE-KQEDGHLNMLLLANGSPEP-TSLSPKHLDN---HLEKKRRGR  534 (630)
Q Consensus       461 sVaFSpD-G~~LASgS~DgtIrVWDl~tg~~~~~l~~-~~~~gh~~~V~svafSpdg-~~lasgs~Dg---~I~i~~~~~  534 (630)
                      +++|+|+ +.+|++++.|++|++||+.+++.+..+.. ....+|...|.+++|+|++ .++++++.|+   .|       
T Consensus       170 ~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i-------  242 (416)
T 2pm9_A          170 SLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSI-------  242 (416)
T ss_dssp             EEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCC-------
T ss_pred             EEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceE-------
Confidence            9999998 78999999999999999999887777521 1112337889999999997 6899999998   88       


Q ss_pred             cccccccccCccccccEEEeC-CC-CceEEec-cCCCCEEEEEEcC-C-CeEEEEECCCcEEEEeCCCCcEEEEEe-cCC
Q 006825          535 SINRKSLSLDHMVVPETVFAL-SD-KPICSFQ-GHLDDVLDLSWSK-S-QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSD  608 (630)
Q Consensus       535 ~~~~~s~s~d~~i~~~~Vwdl-sg-k~l~tL~-GHs~~V~sLafSP-d-~~LaSgS~DgtVrIWDl~tg~~l~t~~-H~~  608 (630)
                                      ++|++ ++ +++..+. +|...|++++|+| + .+|++++.|++|+|||+.+++++.++. |..
T Consensus       243 ----------------~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~  306 (416)
T 2pm9_A          243 ----------------LIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGN  306 (416)
T ss_dssp             ----------------CEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSS
T ss_pred             ----------------EEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCC
Confidence                            78887 33 6778888 9999999999999 7 999999999999999999999999998 999


Q ss_pred             ceEEEE-cCCC-cEEEEecce
Q 006825          609 YDISLV-DRLM-LRFAYGAFL  627 (630)
Q Consensus       609 ~V~sVa-s~~~-~~lAsgs~~  627 (630)
                      .|++++ +|++ ..+++++.+
T Consensus       307 ~v~~~~~s~~~~~~l~s~~~d  327 (416)
T 2pm9_A          307 WCFKTKFAPEAPDLFACASFD  327 (416)
T ss_dssp             CCCCEEECTTCTTEEEECCSS
T ss_pred             ceEEEEECCCCCCEEEEEecC
Confidence            999999 8887 788888654

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=99.97  E-value=6.9e-28  Score=259.23  Aligned_cols=278  Identities=15%  Similarity=0.149  Sum_probs=238.1

Q ss_pred             eecCCCCcccCCCccccccCCCCCcccccccEEEEECCCCcEEEEe------------------eecCCCceeEEEEcCC
Q 006825          262 SINGNGNYIGNSGEVVEDFDGNGTAGVAEQGCLIKNLDNGKEFVVN------------------EIQEDGTWKKVKEVGT  323 (630)
Q Consensus       262 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~LddG~~~~v~------------------e~~~dg~~~~l~dv~T  323 (630)
                      +++++|++|              +++..++.++||++.+|+.....                  ..+.||. .++|++.+
T Consensus       124 ~~~~~g~~l--------------~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~~~dg~-i~vwd~~~  188 (445)
T 2ovr_B          124 CLQFCGNRI--------------VSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRT-LKVWNAET  188 (445)
T ss_dssp             EEEEETTEE--------------EEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEETTEEEEEETTSC-EEEEETTT
T ss_pred             EEEEcCCEE--------------EEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEecCCEEEEEeCCCe-EEEEECCc
Confidence            577788898              56667889999999988765321                  2234444 67999999


Q ss_pred             CceEeeecceeeecCccceeEEEeec-ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCC
Q 006825          324 GRQLTIEEFEMCVGHSPIVQELMRRQ-NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDER  402 (630)
Q Consensus       324 G~~lt~eef~~l~GHs~~V~~Lafs~-~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~  402 (630)
                      |+.+     .++.+|...|.+++|.+ .+++|+.|++++ +||+.+++.+..+. +|...|.+++|  +|+++++++.|+
T Consensus       189 ~~~~-----~~~~~h~~~v~~~~~~~~~l~s~s~dg~i~-~wd~~~~~~~~~~~-~~~~~v~~~~~--~~~~l~~~~~dg  259 (445)
T 2ovr_B          189 GECI-----HTLYGHTSTVRCMHLHEKRVVSGSRDATLR-VWDIETGQCLHVLM-GHVAAVRCVQY--DGRRVVSGAYDF  259 (445)
T ss_dssp             TEEE-----EEECCCSSCEEEEEEETTEEEEEETTSEEE-EEESSSCCEEEEEE-CCSSCEEEEEE--CSSCEEEEETTS
T ss_pred             CcEE-----EEECCCCCcEEEEEecCCEEEEEeCCCEEE-EEECCCCcEEEEEc-CCcccEEEEEE--CCCEEEEEcCCC
Confidence            9888     88899999999999988 899999999999 99999999999998 99999999999  789999999887


Q ss_pred             -----C--C----ccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEE
Q 006825          403 -----D--T----SSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYL  471 (630)
Q Consensus       403 -----d--t----~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~L  471 (630)
                           +  +    ....+|...|.++.+....+++++.|++|++||..+++     ++.++.+|...|.++.+  ++++|
T Consensus       260 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~-----~~~~~~~~~~~v~~~~~--~~~~l  332 (445)
T 2ovr_B          260 MVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGN-----CIHTLTGHQSLTSGMEL--KDNIL  332 (445)
T ss_dssp             CEEEEEGGGTEEEEEECCCSSCEEEEEECSSEEEEEETTSCEEEEETTTCC-----EEEEECCCCSCEEEEEE--ETTEE
T ss_pred             EEEEEECCCCcEeEEecCCCCceEEEEECCCEEEEEeCCCeEEEEECCCCC-----EEEEEcCCcccEEEEEE--eCCEE
Confidence                 1  1    22678999999999976679999999999999998765     46788999999999988  57799


Q ss_pred             EEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccE
Q 006825          472 ASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPET  551 (630)
Q Consensus       472 ASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~  551 (630)
                      ++|+.|++|++||+.+++.+..+.  ....|...|.+++|+  +.++++++.|+.|                       +
T Consensus       333 ~~~~~dg~i~vwd~~~~~~~~~~~--~~~~~~~~v~~~~~~--~~~l~s~~~dg~v-----------------------~  385 (445)
T 2ovr_B          333 VSGNADSTVKIWDIKTGQCLQTLQ--GPNKHQSAVTCLQFN--KNFVITSSDDGTV-----------------------K  385 (445)
T ss_dssp             EEEETTSCEEEEETTTCCEEEEEC--STTSCSSCEEEEEEC--SSEEEEEETTSEE-----------------------E
T ss_pred             EEEeCCCeEEEEECCCCcEEEEEc--cCCCCCCCEEEEEEC--CCEEEEEeCCCeE-----------------------E
Confidence            999999999999999998877752  113488899999995  5899999999999                       8


Q ss_pred             EEeC-CCCceEEe-----ccCCCCEEEEEEcCC-CeEEEEECCCc----EEEEeCCC
Q 006825          552 VFAL-SDKPICSF-----QGHLDDVLDLSWSKS-QHLLSSSMDKT----VRLWHLSS  597 (630)
Q Consensus       552 Vwdl-sgk~l~tL-----~GHs~~V~sLafSPd-~~LaSgS~Dgt----VrIWDl~t  597 (630)
                      +|++ +++.+..+     .+|...|++++|+|+ .+|++|+.||+    |.|||+..
T Consensus       386 iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~~  442 (445)
T 2ovr_B          386 LWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV  442 (445)
T ss_dssp             EEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred             EEECCCCceeeeeeccccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEECCC
Confidence            8888 67888887     578999999999999 88999999998    99999875

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=99.97  E-value=1.3e-28  Score=257.77  Aligned_cols=259  Identities=15%  Similarity=0.133  Sum_probs=220.2

Q ss_pred             eeecCccceeEEEeec----ceEeecCCCccEecccC----CCCc------eeEEecC---------CccCCEEEEEEcC
Q 006825          334 MCVGHSPIVQELMRRQ----NVEEGNKDSFDLNNNGS----SGGG------MKSKKKG---------SWFKSIRTVASSV  390 (630)
Q Consensus       334 ~l~GHs~~V~~Lafs~----~laSgS~D~tvr~vWD~----~tG~------~~~~lk~---------gH~~~V~sVAfSp  390 (630)
                      ....|...|.+++|+|    .||+|+.|++++ +|++    .+++      ....+..         +|...|.+++|+|
T Consensus        40 ~~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~-iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~  118 (425)
T 1r5m_A           40 KEIVKLDNIVSSTWNPLDESILAYGEKNSVAR-LARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSH  118 (425)
T ss_dssp             EEEEECSCCSEEEECSSCTTEEEEEETBTEEE-EEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECT
T ss_pred             eeeeccCceEEEEECCCCCcEEEEecCCceEE-EEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcC
Confidence            3455779999999998    699999999999 9999    8888      4555551         2788999999999


Q ss_pred             CCCeEEeecCCCC----------CccccCCcceEEEeecCCCe--EEEecCCcEEEEEeCCCCcccceeeeeEecccCcC
Q 006825          391 TGHKERRSSDERD----------TSSEKGGRRSSSATDDSQDV--SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGS  458 (630)
Q Consensus       391 dG~~lasgS~D~d----------t~s~~gh~~~Vsa~~~s~d~--l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~  458 (630)
                      +|++|++++.++.          ...+.+|...|.++.+++++  +++++.|+.|++|++.+++     .++.+..|...
T Consensus       119 ~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~-----~~~~~~~~~~~  193 (425)
T 1r5m_A          119 DGNSIVTGVENGELRLWNKTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGT-----VMQHFELKETG  193 (425)
T ss_dssp             TSSEEEEEETTSCEEEEETTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTE-----EEEEECCC---
T ss_pred             CCCEEEEEeCCCeEEEEeCCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCc-----EEEEeeccccC
Confidence            9999999998871          12277899999999999887  8999999999999997764     45677777777


Q ss_pred             ---------------EEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeC
Q 006825          459 ---------------IWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHL  523 (630)
Q Consensus       459 ---------------V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~  523 (630)
                                     |.+++|++++ .|++++.|+.|++||+.+++.+..+     .+|...|.+++|+|++.+|++++.
T Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~i~~~d~~~~~~~~~~-----~~~~~~i~~~~~~~~~~~l~~~~~  267 (425)
T 1r5m_A          194 GSSINAENHSGDGSLGVDVEWVDDD-KFVIPGPKGAIFVYQITEKTPTGKL-----IGHHGPISVLEFNDTNKLLLSASD  267 (425)
T ss_dssp             ------------CCCBSCCEEEETT-EEEEECGGGCEEEEETTCSSCSEEE-----CCCSSCEEEEEEETTTTEEEEEET
T ss_pred             ccceeeccccCCcceeeEEEEcCCC-EEEEEcCCCeEEEEEcCCCceeeee-----ccCCCceEEEEECCCCCEEEEEcC
Confidence                           9999999986 5888999999999999998777664     688999999999999999999999


Q ss_pred             CCeeeeecccccccccccccCccccccEEEeC-CCCceEEeccCCCCEEEEEEcCCCeEEEEECCCcEEEEeCCCCcEEE
Q 006825          524 DNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLK  602 (630)
Q Consensus       524 Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL~GHs~~V~sLafSPd~~LaSgS~DgtVrIWDl~tg~~l~  602 (630)
                      |+.|                       ++|++ +++++..+.+|...|.+++|+|+++|++++.|++|+|||+.+++++.
T Consensus       268 d~~i-----------------------~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~  324 (425)
T 1r5m_A          268 DGTL-----------------------RIWHGGNGNSQNCFYGHSQSIVSASWVGDDKVISCSMDGSVRLWSLKQNTLLA  324 (425)
T ss_dssp             TSCE-----------------------EEECSSSBSCSEEECCCSSCEEEEEEETTTEEEEEETTSEEEEEETTTTEEEE
T ss_pred             CCEE-----------------------EEEECCCCccceEecCCCccEEEEEECCCCEEEEEeCCCcEEEEECCCCcEeE
Confidence            9999                       78887 67888899999999999999998899999999999999999999999


Q ss_pred             EEe-cCCceEEEE-cCCCcEEEEecce
Q 006825          603 IFS-HSDYDISLV-DRLMLRFAYGAFL  627 (630)
Q Consensus       603 t~~-H~~~V~sVa-s~~~~~lAsgs~~  627 (630)
                      .+. |...|++++ ++++..+++++..
T Consensus       325 ~~~~~~~~i~~~~~s~~~~~l~~~~~d  351 (425)
T 1r5m_A          325 LSIVDGVPIFAGRISQDGQKYAVAFMD  351 (425)
T ss_dssp             EEECTTCCEEEEEECTTSSEEEEEETT
T ss_pred             ecccCCccEEEEEEcCCCCEEEEEECC
Confidence            998 999999999 8888888888643

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.97  E-value=1.6e-28  Score=253.64  Aligned_cols=241  Identities=14%  Similarity=0.124  Sum_probs=202.4

Q ss_pred             eeeecCccceeEEEeec---ceEeecCCCccEecccCC--CCceeEEecCCccCCEEEEEEcCC--CCeEEeecCCC---
Q 006825          333 EMCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSS--GGGMKSKKKGSWFKSIRTVASSVT--GHKERRSSDER---  402 (630)
Q Consensus       333 ~~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~--tG~~~~~lk~gH~~~V~sVAfSpd--G~~lasgS~D~---  402 (630)
                      ..+.||...|.+|+|+|   .|++|+.|++++ +||+.  +++.+..+. +|...|.+++|+++  ++++++++.|+   
T Consensus         5 ~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~-iw~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~   82 (379)
T 3jrp_A            5 VIANAHNELIHDAVLDYYGKRLATCSSDKTIK-IFEVEGETHKLIDTLT-GHEGPVWRVDWAHPKFGTILASCSYDGKVL   82 (379)
T ss_dssp             CCEEECCCCEEEEEECSSSSEEEEEETTSCEE-EEEEETTEEEEEEEEC-CCSSCEEEEEECCGGGCSEEEEEETTSCEE
T ss_pred             EEecCCcccEEEEEEcCCCCEEEEEECCCcEE-EEecCCCcceeeeEec-CCCCcEEEEEeCCCCCCCEEEEeccCCEEE
Confidence            78899999999999998   799999999999 99998  667778888 99999999999987  99999999887   


Q ss_pred             ----CC------ccccCCcceEEEeecCCC--e--EEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEcc--
Q 006825          403 ----DT------SSEKGGRRSSSATDDSQD--V--SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSL--  466 (630)
Q Consensus       403 ----dt------~s~~gh~~~Vsa~~~s~d--~--l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSp--  466 (630)
                          .+      ....+|...|.++.++++  +  +++++.|+.|++||+......   ....+.+|...|.+++|+|  
T Consensus        83 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~---~~~~~~~~~~~v~~~~~~~~~  159 (379)
T 3jrp_A           83 IWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTT---SPIIIDAHAIGVNSASWAPAT  159 (379)
T ss_dssp             EEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCC---CEEEEECCTTCEEEEEECCCC
T ss_pred             EEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCce---eeEEecCCCCceEEEEEcCcc
Confidence                11      126678999999999987  5  999999999999999776432   3456789999999999999  


Q ss_pred             -----------CCCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCC---CCEEEEeeCCCeeeeecc
Q 006825          467 -----------DGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPE---PTSLSPKHLDNHLEKKRR  532 (630)
Q Consensus       467 -----------DG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpd---g~~lasgs~Dg~I~i~~~  532 (630)
                                 ++.+|++|+.|++|++||+.++.....+. ..+.+|...|.+++|+|+   +.+|++++.|+.|     
T Consensus       160 ~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i-----  233 (379)
T 3jrp_A          160 IEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLE-STLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTC-----  233 (379)
T ss_dssp             ----------CTTCEEEEEETTSCEEEEEEETTTTEEEEE-EEECCCSSCEEEEEECCCCSSSEEEEEEETTSCE-----
T ss_pred             ccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeE-EEEecccCcEeEEEECCCCCCCCeEEEEeCCCEE-----
Confidence                       79999999999999999998776443322 224789999999999999   8999999999999     


Q ss_pred             cccccccccccCccccccEEEeCC-CC-----ceEEeccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCCCcEEE
Q 006825          533 GRSINRKSLSLDHMVVPETVFALS-DK-----PICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLK  602 (630)
Q Consensus       533 ~~~~~~~s~s~d~~i~~~~Vwdls-gk-----~l~tL~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg~~l~  602 (630)
                                        ++|++. +.     .+.....|...|++++|+|+ .+|++++.||.|+||++..+....
T Consensus       234 ------------------~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~  292 (379)
T 3jrp_A          234 ------------------IIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEGKWE  292 (379)
T ss_dssp             ------------------EEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEETTEEE
T ss_pred             ------------------EEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCCCccc
Confidence                              666662 21     12222458899999999999 999999999999999998654433

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.97  E-value=1.4e-29  Score=283.54  Aligned_cols=212  Identities=10%  Similarity=0.002  Sum_probs=174.8

Q ss_pred             ceEeecCCCccEecccCCCCcee----EEecCCccCCEEEEEEcCC------CCeEEeecCCC-----C--Cc-------
Q 006825          350 NVEEGNKDSFDLNNNGSSGGGMK----SKKKGSWFKSIRTVASSVT------GHKERRSSDER-----D--TS-------  405 (630)
Q Consensus       350 ~laSgS~D~tvr~vWD~~tG~~~----~~lk~gH~~~V~sVAfSpd------G~~lasgS~D~-----d--t~-------  405 (630)
                      .+++++.|++|+ ||++.+++..    .++. +|.+.|++|+|+|+      +.+||+++.|+     +  ..       
T Consensus       175 ~laS~s~D~tI~-iWd~~~~~~~~~~~~~l~-~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~  252 (524)
T 2j04_B          175 MFDKEKHSSCIQ-IFKMNTSTLHCVKVQTIV-HSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVF  252 (524)
T ss_dssp             -------CEEEE-EEEEETTTCCEEEEEEEE-ECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEE
T ss_pred             hhccCCCCceEE-EEEccCCCCCceEEEEEE-ecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccc
Confidence            478999999999 9999888753    3455 78999999999997      57999999987     1  11       


Q ss_pred             --------cccCCcceEEEeecCCCe-EEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEE--EEccCC-CEEEE
Q 006825          406 --------SEKGGRRSSSATDDSQDV-SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSI--KFSLDG-RYLAS  473 (630)
Q Consensus       406 --------s~~gh~~~Vsa~~~s~d~-l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sV--aFSpDG-~~LAS  473 (630)
                              .+.+|...|.+++|+++. +++|+.|++|++||+.+++.    ....+.+|...|++|  +|+|+| ++|||
T Consensus       253 ~~~~~p~~~l~~h~~~v~sv~~s~~~~lasgs~DgtV~lWD~~~~~~----~~~~~~~H~~~V~sv~~~~s~~g~~~laS  328 (524)
T 2j04_B          253 KMCEKPSLTLSLADSLITTFDFLSPTTVVCGFKNGFVAEFDLTDPEV----PSFYDQVHDSYILSVSTAYSDFEDTVVST  328 (524)
T ss_dssp             ECCCSCSEEECCTTTCEEEEEESSSSEEEEEETTSEEEEEETTBCSS----CSEEEECSSSCEEEEEEECCTTSCCEEEE
T ss_pred             eeecCceEEEEcCCCCEEEEEecCCCeEEEEeCCCEEEEEECCCCCC----ceEEeecccccEEEEEEEcCCCCCeEEEE
Confidence                    246788999999998765 99999999999999986532    345689999999999  578888 89999


Q ss_pred             EeCCCcEEEEECcCCceeeeeecccccCccc--ceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccE
Q 006825          474 AGEDCVIHVWQVVESERKGELLEKQEDGHLN--MLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPET  551 (630)
Q Consensus       474 gS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~--~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~  551 (630)
                      ||.|++|||||++++++...+     .+|..  .|.+++|+|++..+++++.|++|                       +
T Consensus       329 ~S~D~tvklWD~~~~~~~~~~-----~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv-----------------------~  380 (524)
T 2j04_B          329 VAVDGYFYIFNPKDIATTKTT-----VSRFRGSNLVPVVYCPQIYSYIYSDGASSL-----------------------R  380 (524)
T ss_dssp             EETTSEEEEECGGGHHHHCEE-----EEECSCCSCCCEEEETTTTEEEEECSSSEE-----------------------E
T ss_pred             eccCCeEEEEECCCCCccccc-----ccccccCcccceEeCCCcCeEEEeCCCCcE-----------------------E
Confidence            999999999999988776654     34442  47889999999999999999999                       8


Q ss_pred             EEeC-CCCceEEeccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeC
Q 006825          552 VFAL-SDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHL  595 (630)
Q Consensus       552 Vwdl-sgk~l~tL~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl  595 (630)
                      +|++ ++.++.++.+|...|++|+|+|+ .+|++|+.|++|+|||+
T Consensus       381 lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~  426 (524)
T 2j04_B          381 AVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSADGSLIITNA  426 (524)
T ss_dssp             EEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEETTTEEECCBS
T ss_pred             EEECcccccceeeecCCCceEEEEeCCCCCeEEEEECCCEEEEEec
Confidence            8887 67788899999999999999999 99999999999999985

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=99.97  E-value=5.7e-29  Score=255.70  Aligned_cols=256  Identities=10%  Similarity=0.035  Sum_probs=203.7

Q ss_pred             eeEEEEcCCCceEeeecceeeecCccceeEEEeecc-------eEeecCCCccEecccCCCCceeEEecCCccCCEEEEE
Q 006825          315 WKKVKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQN-------VEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVA  387 (630)
Q Consensus       315 ~~~l~dv~TG~~lt~eef~~l~GHs~~V~~Lafs~~-------laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVA  387 (630)
                      ..++|+..+++.+..-.......|...|.+++|+|.       |++|+.|++++ +||+.+++.+..+. +|...|.+++
T Consensus        45 ~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~-v~d~~~~~~~~~~~-~~~~~i~~~~  122 (366)
T 3k26_A           45 RVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIR-IINPITMQCIKHYV-GHGNAINELK  122 (366)
T ss_dssp             EEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTCEEE-EECTTTCCEEEEEE-SCCSCEEEEE
T ss_pred             EEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCCEEE-EEEchhceEeeeec-CCCCcEEEEE
Confidence            456777777766511111111236788999999984       99999999999 99999999999998 9999999999


Q ss_pred             EcC-CCCeEEeecCCC-----C--Ccc----c---cCCcceEEEeecCCCe--EEEecCCcEEEEEeCCCCcccce----
Q 006825          388 SSV-TGHKERRSSDER-----D--TSS----E---KGGRRSSSATDDSQDV--SFHGQERVRVRQYGKSCKDLTAL----  446 (630)
Q Consensus       388 fSp-dG~~lasgS~D~-----d--t~s----~---~gh~~~Vsa~~~s~d~--l~Sgs~Dg~VriWd~~~~el~~~----  446 (630)
                      |+| +++++++++.|+     +  +..    .   .+|...|.++.+++++  +++++.|+.|++||...++....    
T Consensus       123 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  202 (366)
T 3k26_A          123 FHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKES  202 (366)
T ss_dssp             ECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHH
T ss_pred             ECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCcccccccee
Confidence            999 999999999887     1  111    2   6899999999999887  89999999999999986542110    


Q ss_pred             -------------------eeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeee---------eeccc
Q 006825          447 -------------------YKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGE---------LLEKQ  498 (630)
Q Consensus       447 -------------------~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~---------l~~~~  498 (630)
                                         .....+.+|...|.+++|+  +++|++++.|+.|++||+.++.....         .....
T Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~  280 (366)
T 3k26_A          203 YDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGR  280 (366)
T ss_dssp             HTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEE
T ss_pred             EEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheecc
Confidence                               0123445599999999998  78999999999999999987654100         00122


Q ss_pred             ccCcccceEEEEECCC--CCEEEEeeCCCeeeeecccccccccccccCccccccEEEeC-CCC----ceEEeccC--CCC
Q 006825          499 EDGHLNMLLLANGSPE--PTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDK----PICSFQGH--LDD  569 (630)
Q Consensus       499 ~~gh~~~V~svafSpd--g~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk----~l~tL~GH--s~~  569 (630)
                      +.+|...|.+++|+|+  +.+|++++.|+.|                       ++|++ +++    .+..+.+|  ...
T Consensus       281 ~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i-----------------------~vwd~~~~~~~~~~~~~~~~~~~~~~  337 (366)
T 3k26_A          281 FDYSQCDIWYMRFSMDFWQKMLALGNQVGKL-----------------------YVWDLEVEDPHKAKCTTLTHHKCGAA  337 (366)
T ss_dssp             EECSSCCSSCCCCEECTTSSEEEEECTTSCE-----------------------EEEECCSSSGGGCEEEEECCTTCCSC
T ss_pred             ccccCCcEEEEEEcCCCCCcEEEEEecCCcE-----------------------EEEECCCCCCccccceEEcccccCCc
Confidence            4678888999999999  9999999999999                       77777 333    44578888  799


Q ss_pred             EEEEEEcCC-CeEEEEECCCcEEEEeCCC
Q 006825          570 VLDLSWSKS-QHLLSSSMDKTVRLWHLSS  597 (630)
Q Consensus       570 V~sLafSPd-~~LaSgS~DgtVrIWDl~t  597 (630)
                      |++++|+|+ ++|++++.||+|+|||+.+
T Consensus       338 v~~~~~s~~~~~l~s~~~dg~i~iwd~~~  366 (366)
T 3k26_A          338 IRQTSFSRDSSILIAVCDDASIWRWDRLR  366 (366)
T ss_dssp             EEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred             eEEEEeCCCCCeEEEEeCCCEEEEEEecC
Confidence            999999999 9999999999999999853

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=99.97  E-value=3.2e-28  Score=254.88  Aligned_cols=249  Identities=16%  Similarity=0.084  Sum_probs=206.4

Q ss_pred             eEEEEcCCCceE-eeecceeeecCccceeEEEeec----------ceEeecCCCccEecccCCCCce-----eEEecCCc
Q 006825          316 KKVKEVGTGRQL-TIEEFEMCVGHSPIVQELMRRQ----------NVEEGNKDSFDLNNNGSSGGGM-----KSKKKGSW  379 (630)
Q Consensus       316 ~~l~dv~TG~~l-t~eef~~l~GHs~~V~~Lafs~----------~laSgS~D~tvr~vWD~~tG~~-----~~~lk~gH  379 (630)
                      .++|++.+++.. ..+....+.+|...|.+++|.|          .|++++.|++++ +||+.+++.     +..+. +|
T Consensus        38 i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~-iw~~~~~~~~~~~~~~~~~-~~  115 (397)
T 1sq9_A           38 LKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLL-FYRITREDETKKVIFEKLD-LL  115 (397)
T ss_dssp             EEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEE-EEEEEECTTTCCEEEEEEC-CS
T ss_pred             EEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEE-EEEccCCcccccccceeec-cc
Confidence            456666665510 1112367789999999999984          489999999999 999999987     88888 88


Q ss_pred             -----cCCEEEEEEc----CCCCe-EEeecCCC-------CC------c---------cc-------cCCcceEEEeecC
Q 006825          380 -----FKSIRTVASS----VTGHK-ERRSSDER-------DT------S---------SE-------KGGRRSSSATDDS  420 (630)
Q Consensus       380 -----~~~V~sVAfS----pdG~~-lasgS~D~-------dt------~---------s~-------~gh~~~Vsa~~~s  420 (630)
                           ...|.+++|+    |+|++ +++++.|+       ..      .         .+       ..|...|.++.++
T Consensus       116 ~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  195 (397)
T 1sq9_A          116 DSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDIS  195 (397)
T ss_dssp             CTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEEC
T ss_pred             ccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEEC
Confidence                 5999999999    99999 99998876       22      1         12       3367788899998


Q ss_pred             CCe-EEEecCCcEEEEEeCCCCcccceeeeeEecc---c---CcCEEEEEEccCCCEEEEEeCC---CcEEEEECcCCce
Q 006825          421 QDV-SFHGQERVRVRQYGKSCKDLTALYKCQEIQA---H---NGSIWSIKFSLDGRYLASAGED---CVIHVWQVVESER  490 (630)
Q Consensus       421 ~d~-l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~g---H---t~~V~sVaFSpDG~~LASgS~D---gtIrVWDl~tg~~  490 (630)
                      +++ +++++.|+.|++||+...+     .+..+.+   |   ...|.+++|+|++++|++++.|   +.|++||+.+++.
T Consensus       196 ~~~~l~~~~~dg~i~i~d~~~~~-----~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~  270 (397)
T 1sq9_A          196 ERGLIATGFNNGTVQISELSTLR-----PLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGER  270 (397)
T ss_dssp             TTSEEEEECTTSEEEEEETTTTE-----EEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCE
T ss_pred             CCceEEEEeCCCcEEEEECCCCc-----eeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcc
Confidence            885 8999999999999997654     4677888   9   9999999999999999999999   9999999999888


Q ss_pred             eeeeecccccC-------------cccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeC-C
Q 006825          491 KGELLEKQEDG-------------HLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-S  556 (630)
Q Consensus       491 ~~~l~~~~~~g-------------h~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-s  556 (630)
                      +..+     .+             |...|.+++|+|++.+|++++.|+.|                       ++|++ +
T Consensus       271 ~~~~-----~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i-----------------------~iwd~~~  322 (397)
T 1sq9_A          271 IGSL-----SVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKL-----------------------RFWDVKT  322 (397)
T ss_dssp             EEEE-----CBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEE-----------------------EEEETTT
T ss_pred             ccee-----ccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeE-----------------------EEEEcCC
Confidence            7775     45             88999999999999999999999999                       77887 6


Q ss_pred             CCceEEec------cC---------------CCCEEEEEEcCC-----------CeEEEEECCCcEEEEeCCCCc
Q 006825          557 DKPICSFQ------GH---------------LDDVLDLSWSKS-----------QHLLSSSMDKTVRLWHLSSKT  599 (630)
Q Consensus       557 gk~l~tL~------GH---------------s~~V~sLafSPd-----------~~LaSgS~DgtVrIWDl~tg~  599 (630)
                      ++++.++.      +|               ...|++++|+|+           .+|++++.|++|+||++.+|+
T Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g~  397 (397)
T 1sq9_A          323 KERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGGK  397 (397)
T ss_dssp             TEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC--
T ss_pred             CceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCCCC
Confidence            77888888      78               999999999999           399999999999999998764

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=99.96  E-value=8.9e-28  Score=255.59  Aligned_cols=259  Identities=16%  Similarity=0.155  Sum_probs=220.8

Q ss_pred             eecCccc--eeEEEeec-ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCC-----C--C
Q 006825          335 CVGHSPI--VQELMRRQ-NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDER-----D--T  404 (630)
Q Consensus       335 l~GHs~~--V~~Lafs~-~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~-----d--t  404 (630)
                      ..||...  +..+.+++ .+++++.|++++ +||+.+|+....+...|...|.+|+|+|+|+++++++.|+     +  +
T Consensus        87 ~~~~~~~~~~~~~~~s~~~l~~~~~d~~v~-lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~  165 (401)
T 4aez_A           87 APGIIDDYYLNLLDWSNLNVVAVALERNVY-VWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVES  165 (401)
T ss_dssp             CTTCCCCTTCBCEEECTTSEEEEEETTEEE-EEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred             CCCCcCCceEEEEeecCCCEEEEECCCeEE-EeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcC
Confidence            3466554  45577776 788999999999 9999999999988867999999999999999999999887     1  1


Q ss_pred             ----ccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcE
Q 006825          405 ----SSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVI  480 (630)
Q Consensus       405 ----~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtI  480 (630)
                          ....+|...|.++.+....+++++.|+.|++||+....    ..+..+.+|.+.|.+++|+|++++|++|+.|++|
T Consensus       166 ~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v  241 (401)
T 4aez_A          166 QTKLRTMAGHQARVGCLSWNRHVLSSGSRSGAIHHHDVRIAN----HQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVV  241 (401)
T ss_dssp             CCEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTSSS----CEEEEEECCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred             CeEEEEecCCCCceEEEEECCCEEEEEcCCCCEEEEecccCc----ceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeE
Confidence                22678999999999988889999999999999997543    2467889999999999999999999999999999


Q ss_pred             EEEECcCCceeeeeecccccCcccceEEEEECCCC-CEEEEee--CCCeeeeecccccccccccccCccccccEEEeC-C
Q 006825          481 HVWQVVESERKGELLEKQEDGHLNMLLLANGSPEP-TSLSPKH--LDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-S  556 (630)
Q Consensus       481 rVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg-~~lasgs--~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-s  556 (630)
                      ++||+.++.....+     .+|...|.+++|+|++ .++++++  .|+.|                       ++|++ +
T Consensus       242 ~iwd~~~~~~~~~~-----~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i-----------------------~i~d~~~  293 (401)
T 4aez_A          242 QIWDARSSIPKFTK-----TNHNAAVKAVAWCPWQSNLLATGGGTMDKQI-----------------------HFWNAAT  293 (401)
T ss_dssp             EEEETTCSSEEEEE-----CCCSSCCCEEEECTTSTTEEEEECCTTTCEE-----------------------EEEETTT
T ss_pred             EEccCCCCCccEEe-----cCCcceEEEEEECCCCCCEEEEecCCCCCEE-----------------------EEEECCC
Confidence            99999998877764     6889999999999976 5555554  69999                       88888 6


Q ss_pred             CCceEEeccCCCCEEEEEEcCC-CeEEEEE--CCCcEEEEeCCCCcEEEE--Ee-cCCceEEEE-cCCCcEEEEecce
Q 006825          557 DKPICSFQGHLDDVLDLSWSKS-QHLLSSS--MDKTVRLWHLSSKTCLKI--FS-HSDYDISLV-DRLMLRFAYGAFL  627 (630)
Q Consensus       557 gk~l~tL~GHs~~V~sLafSPd-~~LaSgS--~DgtVrIWDl~tg~~l~t--~~-H~~~V~sVa-s~~~~~lAsgs~~  627 (630)
                      ++++..+. |...|.+++|+|+ .+|++++  .|++|+|||+.+++....  +. |...|++++ ++++.++++++.+
T Consensus       294 ~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~d  370 (401)
T 4aez_A          294 GARVNTVD-AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASD  370 (401)
T ss_dssp             CCEEEEEE-CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTT
T ss_pred             CCEEEEEe-CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCC
Confidence            77777775 6678999999999 8888854  899999999999876665  44 999999999 9999999988754

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.96  E-value=4.6e-28  Score=248.63  Aligned_cols=250  Identities=13%  Similarity=0.074  Sum_probs=203.0

Q ss_pred             ecceeeecCccceeEEEeec------ceEeecCCCccEecccCCC-Ccee-EEecCCccCCEEEEEEcCCCCeEEeecCC
Q 006825          330 EEFEMCVGHSPIVQELMRRQ------NVEEGNKDSFDLNNNGSSG-GGMK-SKKKGSWFKSIRTVASSVTGHKERRSSDE  401 (630)
Q Consensus       330 eef~~l~GHs~~V~~Lafs~------~laSgS~D~tvr~vWD~~t-G~~~-~~lk~gH~~~V~sVAfSpdG~~lasgS~D  401 (630)
                      +.+..+.+|...|.+|+|+|      .|++|+.|++++ +||+.+ +..+ ..+. +|...|.+++|+|+|++++     
T Consensus        30 ~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~-iw~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~-----  102 (368)
T 3mmy_A           30 KDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVR-CWEVQDSGQTIPKAQQ-MHTGPVLDVCWSDDGSKVF-----  102 (368)
T ss_dssp             CCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEE-EEEECTTSCEEEEEEE-ECSSCEEEEEECTTSSEEE-----
T ss_pred             ceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEE-EEEcCCCCceeEEEec-cccCCEEEEEECcCCCEEE-----
Confidence            34478899999999999997      499999999999 999998 6665 5666 9999999999999988774     


Q ss_pred             CCCccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEE--ccCCCEEEEEeCCCc
Q 006825          402 RDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKF--SLDGRYLASAGEDCV  479 (630)
Q Consensus       402 ~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaF--SpDG~~LASgS~Dgt  479 (630)
                                              +++.|+.|++||+..++      ...+.+|...|++++|  +|++++|++++.|++
T Consensus       103 ------------------------s~~~dg~v~iwd~~~~~------~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~  152 (368)
T 3mmy_A          103 ------------------------TASCDKTAKMWDLSSNQ------AIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKT  152 (368)
T ss_dssp             ------------------------EEETTSEEEEEETTTTE------EEEEEECSSCEEEEEEEECSSCEEEEEEETTSE
T ss_pred             ------------------------EEcCCCcEEEEEcCCCC------ceeeccccCceEEEEEEeCCCCCEEEEccCCCc
Confidence                                    55677899999998764      2346789999999999  899999999999999


Q ss_pred             EEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeeccccccc----------------------
Q 006825          480 IHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSIN----------------------  537 (630)
Q Consensus       480 IrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~----------------------  537 (630)
                      |++||+.+++.+..+     ..+ ..+.++.+.+  ..++.+..++.+.+|+......                      
T Consensus       153 i~vwd~~~~~~~~~~-----~~~-~~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (368)
T 3mmy_A          153 LKFWDTRSSNPMMVL-----QLP-ERCYCADVIY--PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDK  224 (368)
T ss_dssp             EEEECSSCSSCSEEE-----ECS-SCEEEEEEET--TEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECT
T ss_pred             EEEEECCCCcEEEEE-----ecC-CCceEEEecC--CeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccC
Confidence            999999998877764     333 2455555553  4677777888888887654211                      


Q ss_pred             ------ccccccCccccccEEEeCC-C---CceEEeccCCC------------CEEEEEEcCC-CeEEEEECCCcEEEEe
Q 006825          538 ------RKSLSLDHMVVPETVFALS-D---KPICSFQGHLD------------DVLDLSWSKS-QHLLSSSMDKTVRLWH  594 (630)
Q Consensus       538 ------~~s~s~d~~i~~~~Vwdls-g---k~l~tL~GHs~------------~V~sLafSPd-~~LaSgS~DgtVrIWD  594 (630)
                            ....+.++.+   ++|++. .   +.+..+.+|..            .|++++|+|+ .+|++++.||+|+|||
T Consensus       225 ~~~~~~~~~~~~dg~i---~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd  301 (368)
T 3mmy_A          225 QNKPTGFALGSIEGRV---AIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWD  301 (368)
T ss_dssp             TSCEEEEEEEETTSEE---EEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEE
T ss_pred             CCCCCeEEEecCCCcE---EEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEE
Confidence                  1112223333   788883 3   56778888887            7999999999 8999999999999999


Q ss_pred             CCCCcEEEEEe-cCCceEEEE-cCCCcEEEEecce
Q 006825          595 LSSKTCLKIFS-HSDYDISLV-DRLMLRFAYGAFL  627 (630)
Q Consensus       595 l~tg~~l~t~~-H~~~V~sVa-s~~~~~lAsgs~~  627 (630)
                      +.+++++..+. |...|++++ ++++..+++++.+
T Consensus       302 ~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d  336 (368)
T 3mmy_A          302 KDARTKLKTSEQLDQPISACCFNHNGNIFAYASSY  336 (368)
T ss_dssp             TTTTEEEEECCCCSSCEEEEEECTTSSCEEEEECC
T ss_pred             CCCCcEEEEecCCCCCceEEEECCCCCeEEEEecc
Confidence            99999999998 999999999 9999999988654

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=99.96  E-value=1e-28  Score=253.88  Aligned_cols=276  Identities=12%  Similarity=0.035  Sum_probs=218.0

Q ss_pred             eecCccceeEEEeec-------ceEeecCCCccEecccCCCCceeEEecC----CccCCEEEEEEcCC----CCeEEeec
Q 006825          335 CVGHSPIVQELMRRQ-------NVEEGNKDSFDLNNNGSSGGGMKSKKKG----SWFKSIRTVASSVT----GHKERRSS  399 (630)
Q Consensus       335 l~GHs~~V~~Lafs~-------~laSgS~D~tvr~vWD~~tG~~~~~lk~----gH~~~V~sVAfSpd----G~~lasgS  399 (630)
                      ..||...|.+|+|+|       .+++++.++.++ +||+.+++.+..+..    .|...|.+++|+|+    |.++++++
T Consensus        14 ~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~-vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~   92 (366)
T 3k26_A           14 KEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVT-LYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAG   92 (366)
T ss_dssp             ECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEE-EEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEE
T ss_pred             ecCCCCceEEEEEecccCCCCceEEEECCCCEEE-EEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEec
Confidence            458999999999996       266677777999 999999988777761    25678999999999    67899999


Q ss_pred             CCC-----C--C----ccccCCcceEEEeecCC-Ce--EEEecCCcEEEEEeCCCCcccceeeeeEe---cccCcCEEEE
Q 006825          400 DER-----D--T----SSEKGGRRSSSATDDSQ-DV--SFHGQERVRVRQYGKSCKDLTALYKCQEI---QAHNGSIWSI  462 (630)
Q Consensus       400 ~D~-----d--t----~s~~gh~~~Vsa~~~s~-d~--l~Sgs~Dg~VriWd~~~~el~~~~~v~tL---~gHt~~V~sV  462 (630)
                      .|+     +  +    ..+.+|...|.++.+++ ++  +++++.|+.|++||+..++     .+..+   .+|...|.++
T Consensus        93 ~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~-----~~~~~~~~~~~~~~v~~~  167 (366)
T 3k26_A           93 SRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDT-----LVAIFGGVEGHRDEVLSA  167 (366)
T ss_dssp             TTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTE-----EEEEECSTTSCSSCEEEE
T ss_pred             CCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCe-----EEEEecccccccCceeEE
Confidence            887     2  1    22678999999999988 54  9999999999999998764     34555   7899999999


Q ss_pred             EEccCCCEEEEEeCCCcEEEEECcCCceeeeeec-----------------------ccccCcccceEEEEECCCCCEEE
Q 006825          463 KFSLDGRYLASAGEDCVIHVWQVVESERKGELLE-----------------------KQEDGHLNMLLLANGSPEPTSLS  519 (630)
Q Consensus       463 aFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~-----------------------~~~~gh~~~V~svafSpdg~~la  519 (630)
                      +|+|++++|++++.|++|++||+.+++....+..                       ....+|...|.+++|+  +.+++
T Consensus       168 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~  245 (366)
T 3k26_A          168 DYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLIL  245 (366)
T ss_dssp             EECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEE
T ss_pred             EECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEE
Confidence            9999999999999999999999988765433210                       1123488999999998  77999


Q ss_pred             EeeCCCeeeeeccccccccc-ccccCccccccEEEeCCCCceEEeccCCCCEEEEEEcCC---CeEEEEECCCcEEEEeC
Q 006825          520 PKHLDNHLEKKRRGRSINRK-SLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS---QHLLSSSMDKTVRLWHL  595 (630)
Q Consensus       520 sgs~Dg~I~i~~~~~~~~~~-s~s~d~~i~~~~Vwdlsgk~l~tL~GHs~~V~sLafSPd---~~LaSgS~DgtVrIWDl  595 (630)
                      +++.|+.|++|+........ ......         .....+..+.+|...|++++|+|+   .+|++|+.|+.|+|||+
T Consensus       246 ~~~~d~~i~~wd~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~  316 (366)
T 3k26_A          246 SKSCENAIVCWKPGKMEDDIDKIKPSE---------SNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDL  316 (366)
T ss_dssp             EECSSSEEEEEEESSTTCCGGGCCTTC---------CCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEEC
T ss_pred             EEecCCEEEEEeCCCccccccccccCC---------cchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEEC
Confidence            99999999777654422110 000000         011357788999999999999987   78999999999999999


Q ss_pred             CCCc----EEEEEe-c--CCceEEEE-cCCCcEEEEecce
Q 006825          596 SSKT----CLKIFS-H--SDYDISLV-DRLMLRFAYGAFL  627 (630)
Q Consensus       596 ~tg~----~l~t~~-H--~~~V~sVa-s~~~~~lAsgs~~  627 (630)
                      .+++    .+..+. |  ...|++++ ++++..+++++.+
T Consensus       317 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d  356 (366)
T 3k26_A          317 EVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDD  356 (366)
T ss_dssp             CSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETT
T ss_pred             CCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCC
Confidence            9875    444666 5  79999999 8899999988654

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=99.96  E-value=8.1e-28  Score=242.21  Aligned_cols=258  Identities=9%  Similarity=0.044  Sum_probs=215.2

Q ss_pred             CCCcEEEEeeecCCCceeEEEEcCCCceEeeecceeeecCccceeEEEeec---ceEeecCCCccEecccCCCC---cee
Q 006825          299 DNGKEFVVNEIQEDGTWKKVKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGG---GMK  372 (630)
Q Consensus       299 ddG~~~~v~e~~~dg~~~~l~dv~TG~~lt~eef~~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG---~~~  372 (630)
                      .+|+.+++..  .||. .++|++.+++.+     ..+.+|...|.+++|+|   .+++|+.|++++ +|++...   +.+
T Consensus        27 ~~~~~l~s~~--~dg~-v~vw~~~~~~~~-----~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~-~~~~~~~~~~~~~   97 (313)
T 3odt_A           27 VDDSKVASVS--RDGT-VRLWSKDDQWLG-----TVVYTGQGFLNSVCYDSEKELLLFGGKDTMIN-GVPLFATSGEDPL   97 (313)
T ss_dssp             EETTEEEEEE--TTSE-EEEEEESSSEEE-----EEEEECSSCEEEEEEETTTTEEEEEETTSCEE-EEETTCCTTSCC-
T ss_pred             cCCCEEEEEE--cCCc-EEEEECCCCEEE-----EEeecCCccEEEEEECCCCCEEEEecCCCeEE-EEEeeecCCCCcc
Confidence            4566665543  3554 679999888877     77889999999999999   799999999999 9997654   567


Q ss_pred             EEecCCccCCEEEEEEcCCCCeEEeecCCC-----CC----ccccCCcceEEEeecCC---CeEEEecCCcEEEEEeCCC
Q 006825          373 SKKKGSWFKSIRTVASSVTGHKERRSSDER-----DT----SSEKGGRRSSSATDDSQ---DVSFHGQERVRVRQYGKSC  440 (630)
Q Consensus       373 ~~lk~gH~~~V~sVAfSpdG~~lasgS~D~-----dt----~s~~gh~~~Vsa~~~s~---d~l~Sgs~Dg~VriWd~~~  440 (630)
                      ..+. +|...|.+++|  ++.++++++.|+     +.    .....|...+.++.+.+   ..+++++.|+.|++||.. 
T Consensus        98 ~~~~-~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~-  173 (313)
T 3odt_A           98 YTLI-GHQGNVCSLSF--QDGVVISGSWDKTAKVWKEGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQND-  173 (313)
T ss_dssp             CEEC-CCSSCEEEEEE--ETTEEEEEETTSEEEEEETTEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEETT-
T ss_pred             cchh-hcccCEEEEEe--cCCEEEEEeCCCCEEEEcCCcEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEecC-
Confidence            7777 99999999999  678999999887     21    22667888888777644   449999999999999942 


Q ss_pred             CcccceeeeeEecc-cCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEE
Q 006825          441 KDLTALYKCQEIQA-HNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLS  519 (630)
Q Consensus       441 ~el~~~~~v~tL~g-Ht~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~la  519 (630)
                            .....+.. |...|.+++|+|++. |++++.|+.|++||+.+++.+..+     .+|...|.+++|+|++ .++
T Consensus       174 ------~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~-----~~~~~~i~~~~~~~~~-~l~  240 (313)
T 3odt_A          174 ------KVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTY-----EGHESFVYCIKLLPNG-DIV  240 (313)
T ss_dssp             ------EEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEE-----ECCSSCEEEEEECTTS-CEE
T ss_pred             ------ceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhh-----hcCCceEEEEEEecCC-CEE
Confidence                  13566777 999999999999998 999999999999999999888774     7899999999999999 588


Q ss_pred             EeeCCCeeeeecccccccccccccCccccccEEEeC-CCCceEEeccCCCCEEEEEEcCCCeEEEEECCCcEEEEeCCCC
Q 006825          520 PKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSSK  598 (630)
Q Consensus       520 sgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL~GHs~~V~sLafSPd~~LaSgS~DgtVrIWDl~tg  598 (630)
                      +++.|+.|                       ++|++ +++++..+.+|...|.+++|+|++.|++++.|+.|+|||+.++
T Consensus       241 ~~~~dg~v-----------------------~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~dg~i~iw~~~~~  297 (313)
T 3odt_A          241 SCGEDRTV-----------------------RIWSKENGSLKQVITLPAISIWSVDCMSNGDIIVGSSDNLVRIFSQEKS  297 (313)
T ss_dssp             EEETTSEE-----------------------EEECTTTCCEEEEEECSSSCEEEEEECTTSCEEEEETTSCEEEEESCGG
T ss_pred             EEecCCEE-----------------------EEEECCCCceeEEEeccCceEEEEEEccCCCEEEEeCCCcEEEEeCCCC
Confidence            89999999                       88887 7889999999999999999999955888999999999999998


Q ss_pred             cEEEEEe
Q 006825          599 TCLKIFS  605 (630)
Q Consensus       599 ~~l~t~~  605 (630)
                      +.+....
T Consensus       298 ~~~~~~~  304 (313)
T 3odt_A          298 RWASEDE  304 (313)
T ss_dssp             GCCC---
T ss_pred             ceeehhh
Confidence            8766554

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=99.96  E-value=9.6e-28  Score=255.35  Aligned_cols=247  Identities=15%  Similarity=0.132  Sum_probs=203.9

Q ss_pred             eEEEEcCCCceEeeecceeee-cCccceeEEEeec---ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCC
Q 006825          316 KKVKEVGTGRQLTIEEFEMCV-GHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVT  391 (630)
Q Consensus       316 ~~l~dv~TG~~lt~eef~~l~-GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpd  391 (630)
                      .++|+..+|+.+     ..+. +|...|.+++|+|   .|++|+.|++++ +||+.+++.+.++. +|...|.+++|  +
T Consensus       115 v~lw~~~~~~~~-----~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~-iwd~~~~~~~~~~~-~~~~~v~~~~~--~  185 (401)
T 4aez_A          115 VYVWNADSGSVS-----ALAETDESTYVASVKWSHDGSFLSVGLGNGLVD-IYDVESQTKLRTMA-GHQARVGCLSW--N  185 (401)
T ss_dssp             EEEEETTTCCEE-----EEEECCTTCCEEEEEECTTSSEEEEEETTSCEE-EEETTTCCEEEEEC-CCSSCEEEEEE--E
T ss_pred             EEEeeCCCCcEe-----EeeecCCCCCEEEEEECCCCCEEEEECCCCeEE-EEECcCCeEEEEec-CCCCceEEEEE--C
Confidence            567777777766     3333 3889999999998   799999999999 99999999999998 99999999999  5


Q ss_pred             CCeEEeecCCC-----CC-------ccccCCcceEEEeecCCCe--EEEecCCcEEEEEeCCCCcccceeeeeEecccCc
Q 006825          392 GHKERRSSDER-----DT-------SSEKGGRRSSSATDDSQDV--SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNG  457 (630)
Q Consensus       392 G~~lasgS~D~-----dt-------~s~~gh~~~Vsa~~~s~d~--l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~  457 (630)
                      ++++++++.|+     +.       ..+.+|...|.++.+++++  +++++.|+.|++||+...+     .+..+.+|..
T Consensus       186 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~-----~~~~~~~~~~  260 (401)
T 4aez_A          186 RHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSI-----PKFTKTNHNA  260 (401)
T ss_dssp             TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSS-----EEEEECCCSS
T ss_pred             CCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCC-----ccEEecCCcc
Confidence            68999999887     11       2267899999999999887  9999999999999998754     4677889999


Q ss_pred             CEEEEEEccCC-CEEEEEe--CCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEe--eCCCeeeeecc
Q 006825          458 SIWSIKFSLDG-RYLASAG--EDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPK--HLDNHLEKKRR  532 (630)
Q Consensus       458 ~V~sVaFSpDG-~~LASgS--~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasg--s~Dg~I~i~~~  532 (630)
                      .|.+++|+|++ .+|++++  .|++|++||+.+++.+..+      .+...|.+++|+|++.+++++  ..|+.|     
T Consensus       261 ~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~------~~~~~v~~~~~s~~~~~l~~~~g~~dg~i-----  329 (401)
T 4aez_A          261 AVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTV------DAGSQVTSLIWSPHSKEIMSTHGFPDNNL-----  329 (401)
T ss_dssp             CCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEE------ECSSCEEEEEECSSSSEEEEEECTTTCEE-----
T ss_pred             eEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEE------eCCCcEEEEEECCCCCeEEEEeecCCCcE-----
Confidence            99999999966 5777766  7999999999999887774      355689999999999999994  489999     


Q ss_pred             cccccccccccCccccccEEEeC-CCC--ceEEeccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCCCcEEEEEe
Q 006825          533 GRSINRKSLSLDHMVVPETVFAL-SDK--PICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS  605 (630)
Q Consensus       533 ~~~~~~~s~s~d~~i~~~~Vwdl-sgk--~l~tL~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg~~l~t~~  605 (630)
                                        .+|++ +++  .+..+.+|...|++++|+|+ .+|++++.|++|+||++.+++++....
T Consensus       330 ------------------~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~~~~~~  388 (401)
T 4aez_A          330 ------------------SIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGDHVKRPI  388 (401)
T ss_dssp             ------------------EEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC--------
T ss_pred             ------------------EEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCccccccc
Confidence                              67776 433  34457799999999999999 999999999999999999998877653

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.96  E-value=6.8e-28  Score=259.24  Aligned_cols=253  Identities=15%  Similarity=0.189  Sum_probs=202.7

Q ss_pred             eEEEEcCCCceEeeecceeeecCccceeEEEeec-ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCe
Q 006825          316 KKVKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQ-NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHK  394 (630)
Q Consensus       316 ~~l~dv~TG~~lt~eef~~l~GHs~~V~~Lafs~-~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~  394 (630)
                      .++|+..+++.+     ..+.||...|.+|+|.. .|++|+.|++|+ +||+.+++.+.++. +|...|.+++|++  .+
T Consensus       155 i~iwd~~~~~~~-----~~~~~h~~~v~~l~~~~~~l~sg~~dg~i~-vwd~~~~~~~~~~~-~h~~~v~~l~~~~--~~  225 (435)
T 1p22_A          155 IKIWDKNTLECK-----RILTGHTGSVLCLQYDERVIITGSSDSTVR-VWDVNTGEMLNTLI-HHCEAVLHLRFNN--GM  225 (435)
T ss_dssp             EEEEESSSCCEE-----EEECCCSSCEEEEECCSSEEEEEETTSCEE-EEESSSCCEEEEEC-CCCSCEEEEECCT--TE
T ss_pred             EEEEeCCCCeEE-----EEEcCCCCcEEEEEECCCEEEEEcCCCeEE-EEECCCCcEEEEEc-CCCCcEEEEEEcC--CE
Confidence            456777777776     77889999999999976 899999999999 99999999999998 9999999999974  68


Q ss_pred             EEeecCCC-----C--C-------ccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEE
Q 006825          395 ERRSSDER-----D--T-------SSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIW  460 (630)
Q Consensus       395 lasgS~D~-----d--t-------~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~  460 (630)
                      +++++.|+     +  +       ....+|...|.++.+....+++|+.|++|++||..+++     ++.++.+|...|.
T Consensus       226 l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~-----~~~~~~~~~~~v~  300 (435)
T 1p22_A          226 MVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCE-----FVRTLNGHKRGIA  300 (435)
T ss_dssp             EEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTTCC-----EEEEEECCSSCEE
T ss_pred             EEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEeCCCEEEEEeCCCeEEEEECCcCc-----EEEEEcCCCCcEE
Confidence            99999887     1  1       23678999999999977779999999999999998764     5778999999999


Q ss_pred             EEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccc
Q 006825          461 SIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKS  540 (630)
Q Consensus       461 sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s  540 (630)
                      +++|  ++++|++|+.|++|++||+.+++.+..+     .+|...|.+++|  ++.++++++.|+.|++|+.........
T Consensus       301 ~~~~--~~~~l~~g~~dg~i~iwd~~~~~~~~~~-----~~h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~  371 (435)
T 1p22_A          301 CLQY--RDRLVVSGSSDNTIRLWDIECGACLRVL-----EGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRA  371 (435)
T ss_dssp             EEEE--ETTEEEEEETTSCEEEEETTTCCEEEEE-----CCCSSCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTS
T ss_pred             EEEe--CCCEEEEEeCCCeEEEEECCCCCEEEEE-----eCCcCcEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccc
Confidence            9999  5789999999999999999999888774     789999999999  788999999999994444322100000


Q ss_pred             cccCccccccEEEeCCCCceEEeccCCCCEEEEEEcCCCeEEEEECCCcEEEEeCCCCcEEEEEe
Q 006825          541 LSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFS  605 (630)
Q Consensus       541 ~s~d~~i~~~~Vwdlsgk~l~tL~GHs~~V~sLafSPd~~LaSgS~DgtVrIWDl~tg~~l~t~~  605 (630)
                      .             ....++.++.+|...|++++|.+ .+|++|+.||+|+|||+.+........
T Consensus       372 ~-------------~~~~~~~~~~~h~~~v~~l~~~~-~~l~s~s~Dg~i~iwd~~~~~~~~~~~  422 (435)
T 1p22_A          372 P-------------AGTLCLRTLVEHSGRVFRLQFDE-FQIVSSSHDDTILIWDFLNDPAAQAEP  422 (435)
T ss_dssp             C-------------TTTTEEEEECCCSSCCCCEEECS-SCEEECCSSSEEEEEC-----------
T ss_pred             c-------------ccchheeeccCCCCCeEEEEeCC-CEEEEEeCCCEEEEEECCCCCCcccCC
Confidence            0             00126888999999999999932 889999999999999998877655443

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=99.96  E-value=1.7e-27  Score=255.36  Aligned_cols=256  Identities=16%  Similarity=0.181  Sum_probs=214.0

Q ss_pred             eeEEEeec-ceEeecCCCccEecccCCCCceeEEecC-CccCCEEEEEEcCCCCeEEeecCCC-------CC----cccc
Q 006825          342 VQELMRRQ-NVEEGNKDSFDLNNNGSSGGGMKSKKKG-SWFKSIRTVASSVTGHKERRSSDER-------DT----SSEK  408 (630)
Q Consensus       342 V~~Lafs~-~laSgS~D~tvr~vWD~~tG~~~~~lk~-gH~~~V~sVAfSpdG~~lasgS~D~-------dt----~s~~  408 (630)
                      .+.|+|++ ++++.+.|++|+ |||+.+|+..+.+.. +|...|.+|+|+|+|++|++|+.|+       .+    ....
T Consensus       108 ~~~l~wS~~n~lAvgld~tV~-lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~  186 (420)
T 4gga_A          108 LNLVDWSSGNVLAVALDNSVY-LWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMT  186 (420)
T ss_dssp             CBCEEECTTSEEEEEETTEEE-EEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC
T ss_pred             ceeEEECCCCEEEEEeCCEEE-EEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEe
Confidence            45577776 333444599999 999999998887653 7888999999999999999999998       12    2278


Q ss_pred             CCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCC
Q 006825          409 GGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVES  488 (630)
Q Consensus       409 gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg  488 (630)
                      +|...+.++.+....+++|+.|+.+++|+......    .+.++.+|...|..+.|+|+|++|++++.|+.|+||++.++
T Consensus       187 ~h~~~v~~~s~~~~~l~sgs~d~~i~~~d~~~~~~----~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~  262 (420)
T 4gga_A          187 SHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEH----HVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPG  262 (420)
T ss_dssp             CCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSC----EEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCC
T ss_pred             CCCCceEEEeeCCCEEEEEeCCCceeEeeecccce----eeEEecccccceeeeeecCCCCeeeeeeccccceEEeeccc
Confidence            89999999999988899999999999999876542    56789999999999999999999999999999999999887


Q ss_pred             ceeeeeecccccCcccceEEEEECCCC-CEEEE--eeCCCeeeeecccccccccccccCccccccEEEeC-CCCceEEec
Q 006825          489 ERKGELLEKQEDGHLNMLLLANGSPEP-TSLSP--KHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQ  564 (630)
Q Consensus       489 ~~~~~l~~~~~~gh~~~V~svafSpdg-~~las--gs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL~  564 (630)
                      +.....+ .....|...|.+++|+|.+ .++++  |+.|++|                       ++|++ +++++..+.
T Consensus       263 ~~~~~~~-~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I-----------------------~iwd~~t~~~~~~~~  318 (420)
T 4gga_A          263 EGGWVPL-QTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHI-----------------------RIWNVCSGACLSAVD  318 (420)
T ss_dssp             SSCSCCS-EEECCCSSCEEEEEECTTCTTEEEEEECTTTCEE-----------------------EEEETTTTEEEEEEE
T ss_pred             cccceee-eeecccCCceeeeeeCCCcccEEEEEeecCCCEE-----------------------EEEeCCccccceeec
Confidence            6433221 1247888999999999975 44444  4578998                       88888 677777777


Q ss_pred             cCCCCEEEEEEcCC-CeEEEEE--CCCcEEEEeCCCCcEEEEEe-cCCceEEEE-cCCCcEEEEecce
Q 006825          565 GHLDDVLDLSWSKS-QHLLSSS--MDKTVRLWHLSSKTCLKIFS-HSDYDISLV-DRLMLRFAYGAFL  627 (630)
Q Consensus       565 GHs~~V~sLafSPd-~~LaSgS--~DgtVrIWDl~tg~~l~t~~-H~~~V~sVa-s~~~~~lAsgs~~  627 (630)
                      .| ..|.++.|+|+ +.|++++  .|++|+|||+.+++++.+|. |.+.|++|+ +|++..|++++.+
T Consensus       319 ~~-~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D  385 (420)
T 4gga_A          319 AH-SQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAAD  385 (420)
T ss_dssp             CS-SCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETT
T ss_pred             cc-cceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecC
Confidence            55 57899999999 8887765  79999999999999999998 999999999 9999999998765

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.96  E-value=2.7e-28  Score=258.88  Aligned_cols=257  Identities=10%  Similarity=0.044  Sum_probs=193.0

Q ss_pred             EEEEECCCCcEEEEeeecCCCceeEEEEcCCCceEeeecceeeecCccceeEEEeec-----------------------
Q 006825          293 CLIKNLDNGKEFVVNEIQEDGTWKKVKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQ-----------------------  349 (630)
Q Consensus       293 ~~I~~LddG~~~~v~e~~~dg~~~~l~dv~TG~~lt~eef~~l~GHs~~V~~Lafs~-----------------------  349 (630)
                      ..-|...+++|..+....+.  ..+||++.++.  ..|..+++.+|...|.+++|.|                       
T Consensus        44 ~~~~~~~~~~~~~~~~~~~~--~v~lw~~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~  119 (356)
T 2w18_A           44 AMFWERAGCKEPCIITACED--VVSLWKALDAW--QWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFC  119 (356)
T ss_dssp             EEEEC----CEEEEEEEESS--EEEEEEESSSS--BEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC
T ss_pred             eeeeccCCCCccEEEEeccc--eEEEcccCCCc--cceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEE
Confidence            45578899999988777654  46899999982  1233388888887666666655                       


Q ss_pred             ---------ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecC
Q 006825          350 ---------NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDS  420 (630)
Q Consensus       350 ---------~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s  420 (630)
                               .+++++  .+++ +|++.+|+.+.....||.+.|+.++|+|+|+.+++         ..+|...+..++|+
T Consensus       120 spd~~~~~~~l~s~g--~~~~-v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s---------~~~~~~~v~~l~fs  187 (356)
T 2w18_A          120 SSDDESEKQVLLKSG--NIKA-VLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKEN---------QFLMPPEETILTFA  187 (356)
T ss_dssp             ------CCEEEEEEE--EEEE-EEEETTTEEEEEESSSTTCEEEEEEECTTSCEEEE---------EEECCCSSCEEEEE
T ss_pred             CCCccccccEEEeCC--CeEE-EEecCCCcEEEecccCCCCcEEEEEECCCCceeee---------eccCCCceeeEEee
Confidence                     244444  3366 89999999888854489999999999999998874         45666666665555


Q ss_pred             C-----CeEEEecCCcEEEEEeCCCCcccceeeeeEecccC---cCEEEEEEccCCCEE------------EEEeCCCcE
Q 006825          421 Q-----DVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHN---GSIWSIKFSLDGRYL------------ASAGEDCVI  480 (630)
Q Consensus       421 ~-----d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt---~~V~sVaFSpDG~~L------------ASgS~DgtI  480 (630)
                      +     ..+++++.|++||+||+++++     ++++|.+|.   ..|.+++|+|+|+++            +||+.|++|
T Consensus       188 ~~~g~~~~LaSgS~D~TIkIWDl~TGk-----~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tI  262 (356)
T 2w18_A          188 EVQGMQEALLGTTIMNNIVIWNLKTGQ-----LLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQL  262 (356)
T ss_dssp             EEETSTTEEEEEETTSEEEEEETTTCC-----EEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEE
T ss_pred             ccCCCCceEEEecCCCcEEEEECCCCc-----EEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEE
Confidence            5     449999999999999998875     577888754   467888999999976            678999999


Q ss_pred             EEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeC-CCCc
Q 006825          481 HVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKP  559 (630)
Q Consensus       481 rVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~  559 (630)
                      ++||..+++.+..+......+|...+....+  ++.++++++.|++|                       +||++ ++++
T Consensus       263 klWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~--sg~~lASgS~DgTI-----------------------kIWDl~tGk~  317 (356)
T 2w18_A          263 IVINPKTTLSVGVMLYCLPPGQAGRFLEGDV--KDHCAAAILTSGTI-----------------------AIWDLLLGQC  317 (356)
T ss_dssp             EEEETTTTEEEEEEEECCCTTCCCCEEEEEE--ETTEEEEEETTSCE-----------------------EEEETTTCSE
T ss_pred             EEEECCCCEEEEEEEeeccCCCcceeEcccc--CCCEEEEEcCCCcE-----------------------EEEECCCCcE
Confidence            9999999988765431112577666544444  48899999999999                       89998 8899


Q ss_pred             eEEeccCCCCEE-EEEEcCC-CeEEEEECCCcEEEEeC
Q 006825          560 ICSFQGHLDDVL-DLSWSKS-QHLLSSSMDKTVRLWHL  595 (630)
Q Consensus       560 l~tL~GHs~~V~-sLafSPd-~~LaSgS~DgtVrIWDl  595 (630)
                      +++|.+|...|. .++|+|+ ++|+||+.|++|||||+
T Consensus       318 l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~  355 (356)
T 2w18_A          318 TALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY  355 (356)
T ss_dssp             EEEECCC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred             EEEecCCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence            999999998765 5899999 99999999999999995

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.96  E-value=9.1e-28  Score=258.28  Aligned_cols=255  Identities=15%  Similarity=0.154  Sum_probs=222.3

Q ss_pred             eeeecCccceeEEEeec-ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCC-------CC
Q 006825          333 EMCVGHSPIVQELMRRQ-NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDER-------DT  404 (630)
Q Consensus       333 ~~l~GHs~~V~~Lafs~-~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~-------dt  404 (630)
                      ....+|...|.++.|.. .+++|+.|++++ +||..+++.+.++. +|...|.+++|  +++++++|+.|+       .+
T Consensus       127 ~~~~~~~~~v~~~~~d~~~l~~g~~dg~i~-iwd~~~~~~~~~~~-~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~  202 (435)
T 1p22_A          127 HCRSETSKGVYCLQYDDQKIVSGLRDNTIK-IWDKNTLECKRILT-GHTGSVLCLQY--DERVIITGSSDSTVRVWDVNT  202 (435)
T ss_dssp             ECCCSSCCCEEEEECCSSEEEEEESSSCEE-EEESSSCCEEEEEC-CCSSCEEEEEC--CSSEEEEEETTSCEEEEESSS
T ss_pred             ecccCCCCcEEEEEECCCEEEEEeCCCeEE-EEeCCCCeEEEEEc-CCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCC
Confidence            44567888899999976 899999999999 99999999999998 99999999998  889999999987       12


Q ss_pred             ----ccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcE
Q 006825          405 ----SSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVI  480 (630)
Q Consensus       405 ----~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtI  480 (630)
                          ..+.+|...|.++.+.+..+++|+.|++|++||...++..  .....+.+|...|.+++|  ++++|++|+.|++|
T Consensus       203 ~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~--~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i  278 (435)
T 1p22_A          203 GEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDI--TLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTI  278 (435)
T ss_dssp             CCEEEEECCCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCC--EEEEEECCCSSCEEEEEE--ETTEEEEEETTSEE
T ss_pred             CcEEEEEcCCCCcEEEEEEcCCEEEEeeCCCcEEEEeCCCCCCc--eeeeEecCCCCcEEEEEe--CCCEEEEEeCCCeE
Confidence                2267899999999999888999999999999999876432  234678999999999999  88999999999999


Q ss_pred             EEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeC-CCCc
Q 006825          481 HVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKP  559 (630)
Q Consensus       481 rVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~  559 (630)
                      ++||+.+++.+..+     .+|...|.++.+  ++.++++++.|+.|                       ++|++ ++++
T Consensus       279 ~vwd~~~~~~~~~~-----~~~~~~v~~~~~--~~~~l~~g~~dg~i-----------------------~iwd~~~~~~  328 (435)
T 1p22_A          279 KVWNTSTCEFVRTL-----NGHKRGIACLQY--RDRLVVSGSSDNTI-----------------------RLWDIECGAC  328 (435)
T ss_dssp             EEEETTTCCEEEEE-----ECCSSCEEEEEE--ETTEEEEEETTSCE-----------------------EEEETTTCCE
T ss_pred             EEEECCcCcEEEEE-----cCCCCcEEEEEe--CCCEEEEEeCCCeE-----------------------EEEECCCCCE
Confidence            99999999888775     789999999998  57899999999999                       88888 6899


Q ss_pred             eEEeccCCCCEEEEEEcCCCeEEEEECCCcEEEEeCCCCc---------EEEEEe-cCCceEEEEcCCCcEEEEecce
Q 006825          560 ICSFQGHLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKT---------CLKIFS-HSDYDISLVDRLMLRFAYGAFL  627 (630)
Q Consensus       560 l~tL~GHs~~V~sLafSPd~~LaSgS~DgtVrIWDl~tg~---------~l~t~~-H~~~V~sVas~~~~~lAsgs~~  627 (630)
                      +.++.+|...|.+++|.+ .+|++|+.||+|+|||+.+++         ++.++. |...|++++. ++..+++++.+
T Consensus       329 ~~~~~~h~~~v~~~~~~~-~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~-~~~~l~s~s~D  404 (435)
T 1p22_A          329 LRVLEGHEELVRCIRFDN-KRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF-DEFQIVSSSHD  404 (435)
T ss_dssp             EEEECCCSSCEEEEECCS-SEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE-CSSCEEECCSS
T ss_pred             EEEEeCCcCcEEEEEecC-CEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe-CCCEEEEEeCC
Confidence            999999999999999932 899999999999999998766         888888 9999999994 34456666543

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=99.96  E-value=2.4e-27  Score=272.41  Aligned_cols=243  Identities=14%  Similarity=0.105  Sum_probs=209.2

Q ss_pred             eEEEEcCCCceEeeecceeeecCccceeEEEeec---ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCC
Q 006825          316 KKVKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTG  392 (630)
Q Consensus       316 ~~l~dv~TG~~lt~eef~~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG  392 (630)
                      .++|++.+|+.+     .++.+|...|.+++|+|   .|++|+.|++++ +||+.+|+.+.++. +|...|++++|+|+|
T Consensus        37 v~iwd~~~~~~~-----~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~-vw~~~~~~~~~~~~-~~~~~v~~~~~s~~~  109 (814)
T 3mkq_A           37 VEIWNYETQVEV-----RSIQVTETPVRAGKFIARKNWIIVGSDDFRIR-VFNYNTGEKVVDFE-AHPDYIRSIAVHPTK  109 (814)
T ss_dssp             EEEEETTTTEEE-----EEEECCSSCEEEEEEEGGGTEEEEEETTSEEE-EEETTTCCEEEEEE-CCSSCEEEEEECSSS
T ss_pred             EEEEECCCCceE-----EEEecCCCcEEEEEEeCCCCEEEEEeCCCeEE-EEECCCCcEEEEEe-cCCCCEEEEEEeCCC
Confidence            345566666666     67789999999999999   799999999999 99999999999998 999999999999999


Q ss_pred             CeEEeecCCC-------CCc-----cccCCcceEEEeecCC-Ce--EEEecCCcEEEEEeCCCCcccceeeeeEecc-cC
Q 006825          393 HKERRSSDER-------DTS-----SEKGGRRSSSATDDSQ-DV--SFHGQERVRVRQYGKSCKDLTALYKCQEIQA-HN  456 (630)
Q Consensus       393 ~~lasgS~D~-------dt~-----s~~gh~~~Vsa~~~s~-d~--l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~g-Ht  456 (630)
                      +++++++.|+       ++.     ...+|...|.++.+++ ++  +++++.|++|++|+...++.     ...+.. |.
T Consensus       110 ~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~-----~~~~~~~~~  184 (814)
T 3mkq_A          110 PYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTP-----NFTLTTGQE  184 (814)
T ss_dssp             SEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSC-----SEEEECCCT
T ss_pred             CEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcc-----eeEEecCCC
Confidence            9999999887       121     2678999999999998 55  89999999999999876643     334444 44


Q ss_pred             cCEEEEEEcc--CCCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccc
Q 006825          457 GSIWSIKFSL--DGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGR  534 (630)
Q Consensus       457 ~~V~sVaFSp--DG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~  534 (630)
                      ..|.+++|+|  ++.+|++++.|++|++||+.++..+..+     .+|...|.+++|+|++.++++++.|+.|       
T Consensus       185 ~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~l~~~~~dg~v-------  252 (814)
T 3mkq_A          185 RGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATL-----EGHMSNVSFAVFHPTLPIIISGSEDGTL-------  252 (814)
T ss_dssp             TCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEE-----ECCSSCEEEEEECSSSSEEEEEETTSCE-------
T ss_pred             CCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEE-----cCCCCCEEEEEEcCCCCEEEEEeCCCeE-------
Confidence            8999999999  9999999999999999999998887774     7888999999999999999999999999       


Q ss_pred             cccccccccCccccccEEEeC-CCCceEEeccCCCCEEEEEEcCC-C-eEEEEECCCcEEEEeCCCC
Q 006825          535 SINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSWSKS-Q-HLLSSSMDKTVRLWHLSSK  598 (630)
Q Consensus       535 ~~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL~GHs~~V~sLafSPd-~-~LaSgS~DgtVrIWDl~tg  598 (630)
                                      ++|++ +++.+..+..|...|.+++|+|+ . .+++++.|+.+.+|++..+
T Consensus       253 ----------------~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (814)
T 3mkq_A          253 ----------------KIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGND  303 (814)
T ss_dssp             ----------------EEEETTTCSEEEEECCSSSSEEEEEECTTCGGGEEEEEETTEEEEEECSCC
T ss_pred             ----------------EEEECCCCcEEEEeecCCCcEEEEEEccCCCceEEEEEeCCCEEEEEcCCC
Confidence                            88888 67899999999999999999998 3 3455555777899987653

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.96  E-value=3.9e-27  Score=254.76  Aligned_cols=231  Identities=11%  Similarity=0.046  Sum_probs=189.1

Q ss_pred             eecCccceeEEEeec---c-eEeecCCCccEecccCC--CCceeEEecC-CccCCEEEEEEcCCCCeEEeecCCCCCccc
Q 006825          335 CVGHSPIVQELMRRQ---N-VEEGNKDSFDLNNNGSS--GGGMKSKKKG-SWFKSIRTVASSVTGHKERRSSDERDTSSE  407 (630)
Q Consensus       335 l~GHs~~V~~Lafs~---~-laSgS~D~tvr~vWD~~--tG~~~~~lk~-gH~~~V~sVAfSpdG~~lasgS~D~dt~s~  407 (630)
                      ..+|...|.+++|+|   . +++|+.|++++ +||+.  +++.+..+.. +|...|.+++|+|+|++|+           
T Consensus        98 ~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~-iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~-----------  165 (450)
T 2vdu_B           98 APPIYSYIRNLRLTSDESRLIACADSDKSLL-VFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVI-----------  165 (450)
T ss_dssp             --CCCCCEEEEEECTTSSEEEEEEGGGTEEE-EEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEE-----------
T ss_pred             CCccCCceEEEEEcCCCCEEEEEECCCCeEE-EEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEE-----------
Confidence            457888999999999   4 49999999999 99999  8988888762 5678999999999998775           


Q ss_pred             cCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccC---CCEEEEEeCCCcEEEEE
Q 006825          408 KGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLD---GRYLASAGEDCVIHVWQ  484 (630)
Q Consensus       408 ~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpD---G~~LASgS~DgtIrVWD  484 (630)
                                        +++.++.|++|++...+... .....+.+|...|++|+|+|+   +++|++|+.|++|+|||
T Consensus       166 ------------------~~~~~g~v~~~~~~~~~~~~-~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd  226 (450)
T 2vdu_B          166 ------------------IADKFGDVYSIDINSIPEEK-FTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISH  226 (450)
T ss_dssp             ------------------EEETTSEEEEEETTSCCCSS-CCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEE
T ss_pred             ------------------EEeCCCcEEEEecCCccccc-ccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEE
Confidence                              44567889999987664321 023467899999999999999   99999999999999999


Q ss_pred             CcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeC-CCCceEEe
Q 006825          485 VVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSF  563 (630)
Q Consensus       485 l~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL  563 (630)
                      +.++..+..+    ..+|...|.+++|+ ++.+|++++.|+.|                       ++|++ +++++..+
T Consensus       227 ~~~~~~~~~~----~~~h~~~v~~~~~s-d~~~l~s~~~d~~v-----------------------~vwd~~~~~~~~~~  278 (450)
T 2vdu_B          227 YPQCFIVDKW----LFGHKHFVSSICCG-KDYLLLSAGGDDKI-----------------------FAWDWKTGKNLSTF  278 (450)
T ss_dssp             ESCTTCEEEE----CCCCSSCEEEEEEC-STTEEEEEESSSEE-----------------------EEEETTTCCEEEEE
T ss_pred             CCCCceeeee----ecCCCCceEEEEEC-CCCEEEEEeCCCeE-----------------------EEEECCCCcEeeee
Confidence            9998877664    36899999999999 99999999999999                       55554 44445444


Q ss_pred             c-------------------------cCCCCEEEEEEcCC-CeEEEEE-CCCcEEEEeC--CCC---cEEEEEe-cCCce
Q 006825          564 Q-------------------------GHLDDVLDLSWSKS-QHLLSSS-MDKTVRLWHL--SSK---TCLKIFS-HSDYD  610 (630)
Q Consensus       564 ~-------------------------GHs~~V~sLafSPd-~~LaSgS-~DgtVrIWDl--~tg---~~l~t~~-H~~~V  610 (630)
                      .                         .+...|.+++|+|+ .+|++++ .|++|+||++  .++   +++..+. | ..|
T Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v  357 (450)
T 2vdu_B          279 DYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNV  357 (450)
T ss_dssp             ECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCE
T ss_pred             cchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC-Cce
Confidence            3                         23457999999999 8999999 8999999999  666   7777787 6 889


Q ss_pred             EEEE-cCCCcEEEEec
Q 006825          611 ISLV-DRLMLRFAYGA  625 (630)
Q Consensus       611 ~sVa-s~~~~~lAsgs  625 (630)
                      ++++ .+...+++.+.
T Consensus       358 ~~~~~~~~~~~v~~~~  373 (450)
T 2vdu_B          358 ISLSAHNDEFQVTLDN  373 (450)
T ss_dssp             EEEEEETTEEEEEECC
T ss_pred             EEEEecCCcEEEEEec
Confidence            9999 77666665544

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=99.96  E-value=2.3e-26  Score=233.59  Aligned_cols=255  Identities=13%  Similarity=0.075  Sum_probs=214.2

Q ss_pred             CccceeEEEeec---ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCC-------CCc--
Q 006825          338 HSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDER-------DTS--  405 (630)
Q Consensus       338 Hs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~-------dt~--  405 (630)
                      |...|.+++|+|   .++.+..+..+. +|............ +|...|.+++|+|+|+++++++ |+       ++.  
T Consensus         8 ~~~~v~~~~~s~dg~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~   84 (337)
T 1gxr_A            8 GSKPAYSFHVTADGQMQPVPFPPDALI-GPGIPRHARQINTL-NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGN   84 (337)
T ss_dssp             EEEECCEEEECSSSCEEECCCCTTSSS-STTCCSEEEEEEEE-CCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTC
T ss_pred             cCCceeEEEECCCCCEEEeecCCCcEe-ccccCCccccceec-cCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCc
Confidence            556789999999   676777666676 77766655555555 8999999999999999999998 55       111  


Q ss_pred             --c-----ccCCcceEEEeecCCCe--EEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeC
Q 006825          406 --S-----EKGGRRSSSATDDSQDV--SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGE  476 (630)
Q Consensus       406 --s-----~~gh~~~Vsa~~~s~d~--l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~  476 (630)
                        .     ..+|...|.++.+++++  +++++.|+.|++|+...++.   .....+.+|...|.+++|+|++++|++++.
T Consensus        85 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  161 (337)
T 1gxr_A           85 KSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTP---RIKAELTSSAPACYALAISPDSKVCFSCCS  161 (337)
T ss_dssp             CSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC-----EEEEEEECSSSCEEEEEECTTSSEEEEEET
T ss_pred             eeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCc---ceeeecccCCCceEEEEECCCCCEEEEEeC
Confidence              1     12788999999999987  89999999999999987642   245678899999999999999999999999


Q ss_pred             CCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeC-
Q 006825          477 DCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-  555 (630)
Q Consensus       477 DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-  555 (630)
                      |+.|++||+.+++.+..+     .+|...+.+++|+|++.++++++.|+.|                       ++|++ 
T Consensus       162 dg~v~~~d~~~~~~~~~~-----~~~~~~i~~~~~~~~~~~l~~~~~dg~i-----------------------~~~d~~  213 (337)
T 1gxr_A          162 DGNIAVWDLHNQTLVRQF-----QGHTDGASCIDISNDGTKLWTGGLDNTV-----------------------RSWDLR  213 (337)
T ss_dssp             TSCEEEEETTTTEEEEEE-----CCCSSCEEEEEECTTSSEEEEEETTSEE-----------------------EEEETT
T ss_pred             CCcEEEEeCCCCceeeee-----ecccCceEEEEECCCCCEEEEEecCCcE-----------------------EEEECC
Confidence            999999999998877764     7789999999999999999999999999                       78887 


Q ss_pred             CCCceEEeccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCCCcEEEEEecCCceEEEE-cCCCcEEEEecce
Q 006825          556 SDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYDISLV-DRLMLRFAYGAFL  627 (630)
Q Consensus       556 sgk~l~tL~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg~~l~t~~H~~~V~sVa-s~~~~~lAsgs~~  627 (630)
                      +++.+..+ .|...|.+++|+|+ .+|++++.|+.|++||+.+++......|...|++++ ++++..+++++..
T Consensus       214 ~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  286 (337)
T 1gxr_A          214 EGRQLQQH-DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKD  286 (337)
T ss_dssp             TTEEEEEE-ECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred             CCceEeee-cCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeEEEcCCccceeEEEECCCCCEEEEecCC
Confidence            45555555 48889999999999 999999999999999999988765445999999999 8888888887643

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.96  E-value=3.5e-27  Score=250.34  Aligned_cols=230  Identities=13%  Similarity=0.117  Sum_probs=190.8

Q ss_pred             cceeeecCccceeEEEeec----ceEeecCCCccEecccCCCC-------ceeEEecCCccCCEEEEEEcCCCC-eEEee
Q 006825          331 EFEMCVGHSPIVQELMRRQ----NVEEGNKDSFDLNNNGSSGG-------GMKSKKKGSWFKSIRTVASSVTGH-KERRS  398 (630)
Q Consensus       331 ef~~l~GHs~~V~~Lafs~----~laSgS~D~tvr~vWD~~tG-------~~~~~lk~gH~~~V~sVAfSpdG~-~lasg  398 (630)
                      .+..+.||...|.+|+|+|    .|++|+.|++|+ +||+.++       +.+..+. +|...|.+++|+|+|+ ++   
T Consensus        73 ~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~-vw~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~p~~~~~l---  147 (402)
T 2aq5_A           73 NVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVM-VWEIPDGGLVLPLREPVITLE-GHTKRVGIVAWHPTAQNVL---  147 (402)
T ss_dssp             TCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEE-EEECCTTCCSSCBCSCSEEEE-CCSSCEEEEEECSSBTTEE---
T ss_pred             CCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEE-EEEccCCCCccccCCceEEec-CCCCeEEEEEECcCCCCEE---
Confidence            3467889999999999998    799999999999 9999998       6788888 9999999999999873 44   


Q ss_pred             cCCCCCccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEe--cccCcCEEEEEEccCCCEEEEEeC
Q 006825          399 SDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEI--QAHNGSIWSIKFSLDGRYLASAGE  476 (630)
Q Consensus       399 S~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL--~gHt~~V~sVaFSpDG~~LASgS~  476 (630)
                                                ++++.|++|++||+..++     .+..+  .+|...|.+++|+|+|++|++++.
T Consensus       148 --------------------------~s~~~dg~i~iwd~~~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  196 (402)
T 2aq5_A          148 --------------------------LSAGCDNVILVWDVGTGA-----AVLTLGPDVHPDTIYSVDWSRDGALICTSCR  196 (402)
T ss_dssp             --------------------------EEEETTSCEEEEETTTTE-----EEEEECTTTCCSCEEEEEECTTSSCEEEEET
T ss_pred             --------------------------EEEcCCCEEEEEECCCCC-----ccEEEecCCCCCceEEEEECCCCCEEEEEec
Confidence                                      566778899999998764     46677  899999999999999999999999


Q ss_pred             CCcEEEEECcCCceeeeeecccccCcccc-eEEEEECCCCCEEEEe---eCCCeeeeecccccccccccccCccccccEE
Q 006825          477 DCVIHVWQVVESERKGELLEKQEDGHLNM-LLLANGSPEPTSLSPK---HLDNHLEKKRRGRSINRKSLSLDHMVVPETV  552 (630)
Q Consensus       477 DgtIrVWDl~tg~~~~~l~~~~~~gh~~~-V~svafSpdg~~lasg---s~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~V  552 (630)
                      |++|+|||+.+++.+..+    ..+|... +..+.|+|++.+++++   +.|+.|                       .+
T Consensus       197 d~~i~iwd~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i-----------------------~i  249 (402)
T 2aq5_A          197 DKRVRVIEPRKGTVVAEK----DRPHEGTRPVHAVFVSEGKILTTGFSRMSERQV-----------------------AL  249 (402)
T ss_dssp             TSEEEEEETTTTEEEEEE----ECSSCSSSCCEEEECSTTEEEEEEECTTCCEEE-----------------------EE
T ss_pred             CCcEEEEeCCCCceeeee----ccCCCCCcceEEEEcCCCcEEEEeccCCCCceE-----------------------EE
Confidence            999999999998877764    2567665 8899999999999998   789998                       77


Q ss_pred             EeC-CCC-ceEEe-ccCCCCEEEEEEcCC-CeEE-EEECCCcEEEEeCCCCcE-EEEEe---cCCceEEEE-cCCCcEEE
Q 006825          553 FAL-SDK-PICSF-QGHLDDVLDLSWSKS-QHLL-SSSMDKTVRLWHLSSKTC-LKIFS---HSDYDISLV-DRLMLRFA  622 (630)
Q Consensus       553 wdl-sgk-~l~tL-~GHs~~V~sLafSPd-~~La-SgS~DgtVrIWDl~tg~~-l~t~~---H~~~V~sVa-s~~~~~lA  622 (630)
                      |++ +++ ++..+ ..|...|.+++|+|+ .+|+ +|+.|++|+|||+.+++. +..+.   |...|++++ .|++..++
T Consensus       250 wd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~  329 (402)
T 2aq5_A          250 WDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEV  329 (402)
T ss_dssp             EETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCG
T ss_pred             EcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEecccccce
Confidence            777 322 23333 357788999999999 7775 566899999999999873 44443   679999999 77766555


Q ss_pred             E
Q 006825          623 Y  623 (630)
Q Consensus       623 s  623 (630)
                      +
T Consensus       330 s  330 (402)
T 2aq5_A          330 N  330 (402)
T ss_dssp             G
T ss_pred             e
Confidence            4

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=99.96  E-value=8.5e-28  Score=248.60  Aligned_cols=223  Identities=18%  Similarity=0.167  Sum_probs=180.8

Q ss_pred             CCccCCEEEEEEcCCCCeEEeecCCC-----C--C------ccccCCcceEEEeecCC----CeEEEecCCcEEEEEeCC
Q 006825          377 GSWFKSIRTVASSVTGHKERRSSDER-----D--T------SSEKGGRRSSSATDDSQ----DVSFHGQERVRVRQYGKS  439 (630)
Q Consensus       377 ~gH~~~V~sVAfSpdG~~lasgS~D~-----d--t------~s~~gh~~~Vsa~~~s~----d~l~Sgs~Dg~VriWd~~  439 (630)
                      .+|.+.|++|+|+|+|++|++++.|+     +  .      ..+.+|...|.+++|++    ..+++++.|++|++||..
T Consensus        10 ~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~   89 (316)
T 3bg1_A           10 TSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREE   89 (316)
T ss_dssp             ----CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCS
T ss_pred             ccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECC
Confidence            39999999999999999999999997     2  1      23679999999999975    239999999999999997


Q ss_pred             CCcccceeeeeEecccCcCEEEEEEccC--CCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCC---
Q 006825          440 CKDLTALYKCQEIQAHNGSIWSIKFSLD--GRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPE---  514 (630)
Q Consensus       440 ~~el~~~~~v~tL~gHt~~V~sVaFSpD--G~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpd---  514 (630)
                      +++.   ..+.++.+|...|++|+|+|+  |.+|++|+.|++|+|||+..+.....  .....+|...|.+++|+|+   
T Consensus        90 ~~~~---~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~--~~~~~~h~~~v~~~~~~~~~~~  164 (316)
T 3bg1_A           90 NGTW---EKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEV--KKINNAHTIGCNAVSWAPAVVP  164 (316)
T ss_dssp             SSCC---CEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEE--CCBTTSSSSCBCCCEECCCCCC
T ss_pred             CCcc---eEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcce--eeeeccccCCcceEEEccccCC
Confidence            6542   245678999999999999998  88999999999999999987642211  1124789999999999997   


Q ss_pred             --------------CCEEEEeeCCCeeeeecccccccccccccCccccccEEEeCC-C---CceEEeccCCCCEEEEEEc
Q 006825          515 --------------PTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALS-D---KPICSFQGHLDDVLDLSWS  576 (630)
Q Consensus       515 --------------g~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdls-g---k~l~tL~GHs~~V~sLafS  576 (630)
                                    +.+|++++.|++|                       ++|++. +   +++.+|.+|...|++++|+
T Consensus       165 ~~~~~~~~~~~~~~~~~l~sgs~D~~v-----------------------~lWd~~~~~~~~~~~~l~~h~~~V~~v~~s  221 (316)
T 3bg1_A          165 GSLIDHPSGQKPNYIKRFASGGCDNLI-----------------------KLWKEEEDGQWKEEQKLEAHSDWVRDVAWA  221 (316)
T ss_dssp             ------CCSCCCCCCCBEECCBTTSBC-----------------------CEEEECTTSCEEEEECCBCCSSCEEEEECC
T ss_pred             ccccccccccCccccceEEEecCCCeE-----------------------EEEEeCCCCccceeeecccCCCceEEEEec
Confidence                          4689999999999                       677763 2   3667889999999999999


Q ss_pred             CC-----CeEEEEECCCcEEEEeCCCC---c-EEEEEe-cCCceEEEE-cCCCcEEEEecce
Q 006825          577 KS-----QHLLSSSMDKTVRLWHLSSK---T-CLKIFS-HSDYDISLV-DRLMLRFAYGAFL  627 (630)
Q Consensus       577 Pd-----~~LaSgS~DgtVrIWDl~tg---~-~l~t~~-H~~~V~sVa-s~~~~~lAsgs~~  627 (630)
                      |+     .+|++++.|++|+||++.+.   + ....+. |...|++++ +|++..|++++.+
T Consensus       222 p~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D  283 (316)
T 3bg1_A          222 PSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGD  283 (316)
T ss_dssp             CCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESS
T ss_pred             CCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCC
Confidence            96     57999999999999999862   2 223344 899999999 8999999888654

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.95  E-value=3.6e-27  Score=250.89  Aligned_cols=296  Identities=11%  Similarity=0.119  Sum_probs=206.9

Q ss_pred             ceeecCCCCcccCCCccccccCCCCCcccccccEEEEECCCCcEEEEeeecCCCceeEEEEcCCCceEeeecceeeecCc
Q 006825          260 SMSINGNGNYIGNSGEVVEDFDGNGTAGVAEQGCLIKNLDNGKEFVVNEIQEDGTWKKVKEVGTGRQLTIEEFEMCVGHS  339 (630)
Q Consensus       260 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~LddG~~~~v~e~~~dg~~~~l~dv~TG~~lt~eef~~l~GHs  339 (630)
                      .|.+||||++|              +++..++.++||++..++......   .+           +   ++....+.||.
T Consensus        33 ~v~~s~~g~~l--------------a~g~~dg~v~iw~~~~~~~~~~~~---~~-----------~---~~~~~~~~~h~   81 (447)
T 3dw8_B           33 TVEFNHSGELL--------------ATGDKGGRVVIFQQEQENKIQSHS---RG-----------E---YNVYSTFQSHE   81 (447)
T ss_dssp             EEEECSSSSEE--------------EEEETTSEEEEEEECC-----CCC---CC-----------C---EEEEEEEECCC
T ss_pred             EEEECCCCCEE--------------EEEcCCCeEEEEEecCCCCCCccc---cc-----------c---eeEeccccccc
Confidence            47889999998              555667788888887765321111   01           0   11225677888


Q ss_pred             ------------cceeEEEeec-----ceEeecCCCccEecccCCCCcee------------------------------
Q 006825          340 ------------PIVQELMRRQ-----NVEEGNKDSFDLNNNGSSGGGMK------------------------------  372 (630)
Q Consensus       340 ------------~~V~~Lafs~-----~laSgS~D~tvr~vWD~~tG~~~------------------------------  372 (630)
                                  ..|.+|+|.|     .+++++.|++++ +||+.++...                              
T Consensus        82 ~~~~~~~~~~~~~~V~~l~~~~~~~~~~l~s~s~d~~i~-iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  160 (447)
T 3dw8_B           82 PEFDYLKSLEIEEKINKIRWLPQKNAAQFLLSTNDKTIK-LWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPM  160 (447)
T ss_dssp             CEEEGGGTEEECCCCCEEEECCCCSSSEEEEEECSSCEE-EEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEE
T ss_pred             ccccccccccccCceEEEEEcCCCCcceEEEeCCCCeEE-EEecccccCCcceecccCccccccCcccccceEeccccch
Confidence                        8899999997     489999999999 9999875542                              


Q ss_pred             ---------EEecCCccCCEEEEEEcCCCCeEEeecCCC-----CCc--------------cccCCcceEEEeecCCCe-
Q 006825          373 ---------SKKKGSWFKSIRTVASSVTGHKERRSSDER-----DTS--------------SEKGGRRSSSATDDSQDV-  423 (630)
Q Consensus       373 ---------~~lk~gH~~~V~sVAfSpdG~~lasgS~D~-----dt~--------------s~~gh~~~Vsa~~~s~d~-  423 (630)
                               ..+..+|...|.+++|+|+|++++++ .|+     +..              ...+|...|.++.+++++ 
T Consensus       161 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~  239 (447)
T 3dw8_B          161 DLMVEASPRRIFANAHTYHINSISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSC  239 (447)
T ss_dssp             EEEEEEEEEEEECSCCSSCCCEEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCT
T ss_pred             heeeeccceEEeccCCCcceEEEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCC
Confidence                     23334899999999999999999999 565     221              255899999999999875 


Q ss_pred             --EEEecCCcEEEEEeCCCCcccceeeeeEecccCc------------CEEEEEEccCCCEEEEEeCCCcEEEEECcC-C
Q 006825          424 --SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNG------------SIWSIKFSLDGRYLASAGEDCVIHVWQVVE-S  488 (630)
Q Consensus       424 --l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~------------~V~sVaFSpDG~~LASgS~DgtIrVWDl~t-g  488 (630)
                        +++|+.|++|++||+..++... ..+..+.+|..            .|.+++|+|+|++|++++. ++|+|||+.+ +
T Consensus       240 ~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~  317 (447)
T 3dw8_B          240 NTFVYSSSKGTIRLCDMRASALCD-RHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMEN  317 (447)
T ss_dssp             TEEEEEETTSCEEEEETTTCSSSC-TTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCS
T ss_pred             cEEEEEeCCCeEEEEECcCCcccc-ceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCc
Confidence              9999999999999998765311 11467788876            9999999999999999999 9999999987 6


Q ss_pred             ceeeeeecccccCcccc---------------eEEEEECCCCCEEEEeeCCCeeeeecccccccccccccC------ccc
Q 006825          489 ERKGELLEKQEDGHLNM---------------LLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLD------HMV  547 (630)
Q Consensus       489 ~~~~~l~~~~~~gh~~~---------------V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d------~~i  547 (630)
                      +.+..+     .+|...               ++.++|+|++.+|++++.|+.|++|+.............      ...
T Consensus       318 ~~~~~~-----~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~  392 (447)
T 3dw8_B          318 RPVETY-----QVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVL  392 (447)
T ss_dssp             SCSCCE-----ESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBC
T ss_pred             ccccee-----eccccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeeeccccccccccc
Confidence            666664     445321               334999999999999999999988876553221100000      000


Q ss_pred             cccEEEeCC--C-Cce-EEeccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeCC
Q 006825          548 VPETVFALS--D-KPI-CSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLS  596 (630)
Q Consensus       548 ~~~~Vwdls--g-k~l-~tL~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~  596 (630)
                      .+..+....  . ..+ .....+...|..++|+|+ .+||+++.++ ++||..+
T Consensus       393 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~-~~~~~~~  445 (447)
T 3dw8_B          393 KPRKVCASGKRKKDEISVDSLDFNKKILHTAWHPKENIIAVATTNN-LYIFQDK  445 (447)
T ss_dssp             CCCCEECSSCCCTTCEEGGGCCTTSCCCEEEECSSSSEEEEECSSC-EEEEECC
T ss_pred             CCccccccCCcccccccccccccCCceeEEEECCCCCEEEEEecce-eeeeccc
Confidence            000111110  0 000 001235668999999999 8888888776 8888754

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.95  E-value=3.5e-27  Score=264.47  Aligned_cols=279  Identities=9%  Similarity=-0.023  Sum_probs=205.0

Q ss_pred             CceeecCCCCcccCCCccccccCCCCCcccccccEEEEECCCCcEE--------EEeeecCCCceeEEEEcCCCceEeee
Q 006825          259 DSMSINGNGNYIGNSGEVVEDFDGNGTAGVAEQGCLIKNLDNGKEF--------VVNEIQEDGTWKKVKEVGTGRQLTIE  330 (630)
Q Consensus       259 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~LddG~~~--------~v~e~~~dg~~~~l~dv~TG~~lt~e  330 (630)
                      .+|.+||||++|+.+|+              |.+++  +...++.+        .|.. ..+| ....|++.+++..   
T Consensus        19 ~sv~~SpDG~~iASas~--------------D~TV~--d~~~~~~l~gh~~~v~~V~F-sPdg-~~~~~~~~~~~~~---   77 (588)
T 2j04_A           19 NNLTWARDGTLYLTTFP--------------DISIG--QPKYAKDINCNSKNLFHVKE-FPLE-FENKLDFELAQQN---   77 (588)
T ss_dssp             CCEEECTTSCEEEECSS--------------SEEEE--EECCCSCCSSBGGGTEEEEE-ECCC-CCCTTTTSCCCSS---
T ss_pred             EEEEECCCCCEEEEEcC--------------Cceee--cccccceecCCCccEEEEEE-CCCC-CcceEEEEeCCCc---
Confidence            45899999999955554              33333  33333322        2211 2223 2335556655543   


Q ss_pred             cceeee-cCccceeEEEeec---ceEeecCCCccEecccCCCCceeEEecCCccC-----CEEEEEEcCCCCeEEeecCC
Q 006825          331 EFEMCV-GHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFK-----SIRTVASSVTGHKERRSSDE  401 (630)
Q Consensus       331 ef~~l~-GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~-----~V~sVAfSpdG~~lasgS~D  401 (630)
                        ..+. +|.+.|..++|+|   .||+++.|++++ +||..+  ++..+.  |..     .|.+|||||||++|+     
T Consensus        78 --~~~~~~~~~~V~~vawSPdG~~LAs~s~dg~V~-iwd~~~--~l~~l~--~~~~~~~~sv~svafSPDG~~LA-----  145 (588)
T 2j04_A           78 --GLLNSQPVCYPRVCKPSPIDDWMAVLSNNGNVS-VFKDNK--MLTNLD--SKGNLSSRTYHCFEWNPIESSIV-----  145 (588)
T ss_dssp             --CSSTTSCSCCEEEEEECSSSSCEEEEETTSCEE-EEETTE--EEEECC--CSSCSTTTCEEEEEECSSSSCEE-----
T ss_pred             --eEeecCCCCcEEEEEECCCCCEEEEEeCCCcEE-EEeCCc--eeeecc--CCCccccccEEEEEEcCCCCEEE-----
Confidence              2222 6789999999999   799999999999 999654  555555  443     699999999998885     


Q ss_pred             CCCccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccce--eeeeEe----cccCcCEEEEEEccCCCEEEEEe
Q 006825          402 RDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTAL--YKCQEI----QAHNGSIWSIKFSLDGRYLASAG  475 (630)
Q Consensus       402 ~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~--~~v~tL----~gHt~~V~sVaFSpDG~~LASgS  475 (630)
                                              +|+.|++|++|+...+.+...  ..+.++    .+|...|.+++|+|||  |++++
T Consensus       146 ------------------------sgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass  199 (588)
T 2j04_A          146 ------------------------VGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAAL  199 (588)
T ss_dssp             ------------------------EEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEE
T ss_pred             ------------------------EEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEe
Confidence                                    556778999999987653221  135666    7888999999999999  88899


Q ss_pred             CCCcEEEEECcCCcee---eeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEE
Q 006825          476 EDCVIHVWQVVESERK---GELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETV  552 (630)
Q Consensus       476 ~DgtIrVWDl~tg~~~---~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~V  552 (630)
                      .|++|++|++.++...   .++    ..+|...|..++|+  +..+++++ ++.|                       ++
T Consensus       200 ~D~tVrlWd~~~~~~~~~~~tL----~~~h~~~V~svaFs--g~~LASa~-~~tI-----------------------kL  249 (588)
T 2j04_A          200 SNNSVFSMTVSASSHQPVSRMI----QNASRRKITDLKIV--DYKVVLTC-PGYV-----------------------HK  249 (588)
T ss_dssp             TTCCEEEECCCSSSSCCCEEEE----ECCCSSCCCCEEEE--TTEEEEEC-SSEE-----------------------EE
T ss_pred             CCCeEEEEECCCCccccceeee----cccccCcEEEEEEE--CCEEEEEe-CCeE-----------------------EE
Confidence            9999999999887732   232    24788899999999  68888886 6888                       89


Q ss_pred             EeCCCCceEEec-cCCCCEEEEEE--cCC-CeEEEEECCCcEEEEeCCC-----------------------CcEEEEEe
Q 006825          553 FALSDKPICSFQ-GHLDDVLDLSW--SKS-QHLLSSSMDKTVRLWHLSS-----------------------KTCLKIFS  605 (630)
Q Consensus       553 wdlsgk~l~tL~-GHs~~V~sLaf--SPd-~~LaSgS~DgtVrIWDl~t-----------------------g~~l~t~~  605 (630)
                      |++.+..+..+. ||...|..++|  +|+ ..|++++.||+ |||....                       +..+..+.
T Consensus       250 Wd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d~~~~spd~~l~a~~d~~v~lW~~~g~~l~~~~  328 (588)
T 2j04_A          250 IDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLEDELHVTADNIIAPYLEKKFKKWSTIWNEFNNYE  328 (588)
T ss_dssp             EETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESSSEEEECCCSSHHHHHHHHHHTTTTTTSSSSSC
T ss_pred             EECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeeccEEECCCceEEEEcCCEEEEEECCCCceeeec
Confidence            998666664444 99999999999  999 78999999999 9998631                       11122222


Q ss_pred             cCCceEEEE-cCCCcEEEEecce
Q 006825          606 HSDYDISLV-DRLMLRFAYGAFL  627 (630)
Q Consensus       606 H~~~V~sVa-s~~~~~lAsgs~~  627 (630)
                      +...|++|+ +|++..+|+++.+
T Consensus       329 ~~~~I~~va~SPdG~~lA~~~~i  351 (588)
T 2j04_A          329 TTLVIHGISLSPDGYSIAIVYDM  351 (588)
T ss_dssp             CEEEEEEEEECTTSSEEEEEEEE
T ss_pred             cceEEEEEEECCCCCEEEEEEec
Confidence            444589999 9999999988754

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=99.95  E-value=5.2e-27  Score=250.63  Aligned_cols=281  Identities=11%  Similarity=0.073  Sum_probs=194.8

Q ss_pred             ceeecC-CCCcccCCCccccccCCCCCcccccccEEEEECCC---------------------------CcEEEEeeecC
Q 006825          260 SMSING-NGNYIGNSGEVVEDFDGNGTAGVAEQGCLIKNLDN---------------------------GKEFVVNEIQE  311 (630)
Q Consensus       260 ~~~~s~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~Ldd---------------------------G~~~~v~e~~~  311 (630)
                      +++++| ||++|              +++..++.++||++..                           |+.+++.  +.
T Consensus        68 ~~~~s~~~~~~l--------------~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~--s~  131 (437)
T 3gre_A           68 SSAVSPGETPYL--------------ITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNFDAFAVS--SK  131 (437)
T ss_dssp             EEEEECSSSCEE--------------EEEETTSEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECTTSSEEEEE--ET
T ss_pred             EEEECCCCCCEE--------------EEecCCceEEEeECcccccCcccceeeeccCCCCEEEEEEeCCCCEEEEE--eC
Confidence            489999 99999              4444556666666544                           3333322  23


Q ss_pred             CCceeEEEEcC---CCceEeeecc---eeee--c--CccceeEEEee--c---ceEeecCCCccEecccCCCCceeEEec
Q 006825          312 DGTWKKVKEVG---TGRQLTIEEF---EMCV--G--HSPIVQELMRR--Q---NVEEGNKDSFDLNNNGSSGGGMKSKKK  376 (630)
Q Consensus       312 dg~~~~l~dv~---TG~~lt~eef---~~l~--G--Hs~~V~~Lafs--~---~laSgS~D~tvr~vWD~~tG~~~~~lk  376 (630)
                      || ..++|++.   +|+.+.....   ..+.  .  |...+.++.+.  +   .+++|+.|++++ +||+.+++.+.++.
T Consensus       132 dg-~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~-iwd~~~~~~~~~~~  209 (437)
T 3gre_A          132 DG-QIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVI-IFDIRTLERLQIIE  209 (437)
T ss_dssp             TS-EEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEE-EEETTTCCEEEEEE
T ss_pred             CC-EEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEE-EEeCCCCeeeEEEc
Confidence            44 36789884   6766622111   1111  1  44556666633  3   799999999999 99999999999998


Q ss_pred             CC--ccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEec-
Q 006825          377 GS--WFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQ-  453 (630)
Q Consensus       377 ~g--H~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~-  453 (630)
                       +  |...|.+++|+|+|++++                             +|+.|++|++||+..++     ++.++. 
T Consensus       210 -~~~h~~~v~~~~~s~~~~~l~-----------------------------s~~~dg~i~iwd~~~~~-----~~~~~~~  254 (437)
T 3gre_A          210 -NSPRHGAVSSICIDEECCVLI-----------------------------LGTTRGIIDIWDIRFNV-----LIRSWSF  254 (437)
T ss_dssp             -CCGGGCCEEEEEECTTSCEEE-----------------------------EEETTSCEEEEETTTTE-----EEEEEBC
T ss_pred             -cCCCCCceEEEEECCCCCEEE-----------------------------EEcCCCeEEEEEcCCcc-----EEEEEec
Confidence             6  999999999999988774                             55677889999998754     456665 


Q ss_pred             ccCcCEEEEEEc----cCCCEEEEEeCCCcEEEEECcCCceeeeeecc-------------------cccC--cccceEE
Q 006825          454 AHNGSIWSIKFS----LDGRYLASAGEDCVIHVWQVVESERKGELLEK-------------------QEDG--HLNMLLL  508 (630)
Q Consensus       454 gHt~~V~sVaFS----pDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~-------------------~~~g--h~~~V~s  508 (630)
                      +|...|.+++|+    +++++|++|+.|++|+|||+.+++++..+...                   .+.+  |...|.+
T Consensus       255 ~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~  334 (437)
T 3gre_A          255 GDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALST  334 (437)
T ss_dssp             TTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCC
T ss_pred             CCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEE
Confidence            788899999655    57889999999999999999998877665311                   0122  7788999


Q ss_pred             EEECCCCCEEEEeeCCCeeeeecccccccccccccC----ccccc-----------cEEEeCCCCceEEeccCCCCEEEE
Q 006825          509 ANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLD----HMVVP-----------ETVFALSDKPICSFQGHLDDVLDL  573 (630)
Q Consensus       509 vafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d----~~i~~-----------~~Vwdlsgk~l~tL~GHs~~V~sL  573 (630)
                      ++|+ ++.+|++++.|+.|++|+.........+...    ..+..           ..+....+..+..+..|.+.|+++
T Consensus       335 l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i  413 (437)
T 3gre_A          335 ISVS-NDKILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSI  413 (437)
T ss_dssp             EEEE-TTEEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEE
T ss_pred             EEEC-CceEEEecCCCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeE
Confidence            9999 7899999999999999997764433322211    00000           000011334445556799999999


Q ss_pred             EEcCC---CeEEEEECCCcEEEEe
Q 006825          574 SWSKS---QHLLSSSMDKTVRLWH  594 (630)
Q Consensus       574 afSPd---~~LaSgS~DgtVrIWD  594 (630)
                      +|+++   .+|+||+.||+|+||+
T Consensus       414 ~~~~~~~~~~l~s~~~dG~I~iw~  437 (437)
T 3gre_A          414 STCEVDETPLLVACDNSGLIGIFQ  437 (437)
T ss_dssp             EEEESSSSEEEEEEETTSCEEEEC
T ss_pred             eeeccCCceEEEEEcCCceEEEeC
Confidence            99975   5899999999999995

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.95  E-value=3.9e-26  Score=246.10  Aligned_cols=236  Identities=14%  Similarity=0.155  Sum_probs=199.6

Q ss_pred             eeeecCccceeEEEeec----ceEeecCCCccEecccCCC----------CceeEEecCCccCCEEEEEEcCCCC-eEEe
Q 006825          333 EMCVGHSPIVQELMRRQ----NVEEGNKDSFDLNNNGSSG----------GGMKSKKKGSWFKSIRTVASSVTGH-KERR  397 (630)
Q Consensus       333 ~~l~GHs~~V~~Lafs~----~laSgS~D~tvr~vWD~~t----------G~~~~~lk~gH~~~V~sVAfSpdG~-~las  397 (630)
                      ..+.+|...|..|+|.|    .+++++.|++|+ +||+.+          +..+.++. +|...|.+++|+|++. +|  
T Consensus       122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~-vwd~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~~~~~~~l--  197 (430)
T 2xyi_A          122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVL-VFDYTKHPSKPEPSGECQPDLRLR-GHQKEGYGLSWNPNLNGYL--  197 (430)
T ss_dssp             EEEEEESSCCSEEEEETTEEEEEEEECSSSCEE-EEEGGGSCSSCCTTCCCCCSEEEE-CCSSCCCCEEECTTSTTEE--
T ss_pred             EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEE-EEECCCcccccCccccCCCcEEec-CCCCCeEEEEeCCCCCCeE--
Confidence            46788999999999998    699999999999 999987          67888888 9999999999999876 44  


Q ss_pred             ecCCCCCccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcc--cceeeeeEecccCcCEEEEEEcc-CCCEEEEE
Q 006825          398 SSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDL--TALYKCQEIQAHNGSIWSIKFSL-DGRYLASA  474 (630)
Q Consensus       398 gS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el--~~~~~v~tL~gHt~~V~sVaFSp-DG~~LASg  474 (630)
                                                 ++|+.|++|++|++.....  ........+.+|...|.+|+|+| ++.+|+++
T Consensus       198 ---------------------------~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~  250 (430)
T 2xyi_A          198 ---------------------------LSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSV  250 (430)
T ss_dssp             ---------------------------EEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEE
T ss_pred             ---------------------------EEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEE
Confidence                                       6677788999999976322  11223567889999999999999 78899999


Q ss_pred             eCCCcEEEEECcCCc---eeeeeecccccCcccceEEEEECCCCC-EEEEeeCCCeeeeecccccccccccccCcccccc
Q 006825          475 GEDCVIHVWQVVESE---RKGELLEKQEDGHLNMLLLANGSPEPT-SLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPE  550 (630)
Q Consensus       475 S~DgtIrVWDl~tg~---~~~~l~~~~~~gh~~~V~svafSpdg~-~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~  550 (630)
                      +.|+.|++||+.++.   .+..     ...|...|.+++|+|++. ++++++.|+.|                       
T Consensus       251 ~~dg~i~i~d~~~~~~~~~~~~-----~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v-----------------------  302 (430)
T 2xyi_A          251 ADDQKLMIWDTRNNNTSKPSHT-----VDAHTAEVNCLSFNPYSEFILATGSADKTV-----------------------  302 (430)
T ss_dssp             ETTSEEEEEETTCSCSSSCSEE-----EECCSSCEEEEEECSSCTTEEEEEETTSEE-----------------------
T ss_pred             eCCCeEEEEECCCCCCCcceeE-----eecCCCCeEEEEeCCCCCCEEEEEeCCCeE-----------------------
Confidence            999999999999773   3333     368889999999999987 68899999999                       


Q ss_pred             EEEeCC--CCceEEeccCCCCEEEEEEcCC--CeEEEEECCCcEEEEeCCC--------------CcEEEEEe-cCCceE
Q 006825          551 TVFALS--DKPICSFQGHLDDVLDLSWSKS--QHLLSSSMDKTVRLWHLSS--------------KTCLKIFS-HSDYDI  611 (630)
Q Consensus       551 ~Vwdls--gk~l~tL~GHs~~V~sLafSPd--~~LaSgS~DgtVrIWDl~t--------------g~~l~t~~-H~~~V~  611 (630)
                      ++|++.  ++++.++.+|...|++++|+|+  .+|++++.|++|+|||+..              .+++..+. |...|+
T Consensus       303 ~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~  382 (430)
T 2xyi_A          303 ALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKIS  382 (430)
T ss_dssp             EEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEE
T ss_pred             EEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCce
Confidence            788873  5778999999999999999998  4799999999999999987              36777776 999999


Q ss_pred             EEE-cCCCc-EEEEecce
Q 006825          612 SLV-DRLML-RFAYGAFL  627 (630)
Q Consensus       612 sVa-s~~~~-~lAsgs~~  627 (630)
                      +++ ++.+. .+++++..
T Consensus       383 ~~~~~p~~~~~l~s~s~d  400 (430)
T 2xyi_A          383 DFSWNPNEPWIICSVSED  400 (430)
T ss_dssp             EEEECSSSTTEEEEEETT
T ss_pred             EEEECCCCCCEEEEEECC
Confidence            999 77776 67776543

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.95  E-value=3.5e-27  Score=251.94  Aligned_cols=254  Identities=7%  Similarity=-0.132  Sum_probs=169.7

Q ss_pred             eecCccceeEEEeec---ceEeecCCCccEecccCCCCceeE-----EecCCccCCEEEEEEcC--------CCCeEEee
Q 006825          335 CVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKS-----KKKGSWFKSIRTVASSV--------TGHKERRS  398 (630)
Q Consensus       335 l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~-----~lk~gH~~~V~sVAfSp--------dG~~lasg  398 (630)
                      ..+|.+.+....+.+   .||+|+.|+++| +||+.++....     .+. ||...|++|+|+|        ||++    
T Consensus        85 ~~~~~~~~~~~~~~~~~~~las~~~d~~v~-lw~~~~~~~~~~~~~~~~~-gH~~~v~~v~~~p~~~~~~~~d~~~----  158 (393)
T 4gq1_A           85 ENLHDGDGNVNSSPVYSLFLACVCQDNTVR-LIITKNETIITQHVLGGKS-GHHNFVNDIDIADVYSADNRLAEQV----  158 (393)
T ss_dssp             CC----------CCEEEEEEEEEETTSCEE-EEEEETTEEEEEEEECTTT-SCSSCEEEEEEEEEECTTCSEEEEE----
T ss_pred             ccccCCCcceeecCCCCCEEEEEeCCCcEE-EEECCCCccceeeeecccC-CCCCceEEEEEccccccccCCCCCE----
Confidence            345666666666655   799999999999 99999987543     244 9999999999998        3333    


Q ss_pred             cCCCCCccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCC-CEEEEEeCC
Q 006825          399 SDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDG-RYLASAGED  477 (630)
Q Consensus       399 S~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG-~~LASgS~D  477 (630)
                                               +++++.|++||+||+....     ++..+.+|...|.+++|+|++ ++|++|+.|
T Consensus       159 -------------------------las~s~D~tv~~Wd~~~~~-----~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d  208 (393)
T 4gq1_A          159 -------------------------IASVGDDCTLIIWRLTDEG-----PILAGYPLSSPGISVQFRPSNPNQLIVGERN  208 (393)
T ss_dssp             -------------------------EEEEETTSEEEEEEEETTE-----EEEEEEECSSCEEEEEEETTEEEEEEEEETT
T ss_pred             -------------------------EEEEECCCeEEEEECCCCc-----eeeeecCCCCCcEEEEECCCCCceEEecCCC
Confidence                                     5777888899999986553     456678899999999999987 589999999


Q ss_pred             CcEEEEECcCCceeeeeec--------------------ccccCcccceEEEEEC-CCCCEEEEeeCCCeeeeecccccc
Q 006825          478 CVIHVWQVVESERKGELLE--------------------KQEDGHLNMLLLANGS-PEPTSLSPKHLDNHLEKKRRGRSI  536 (630)
Q Consensus       478 gtIrVWDl~tg~~~~~l~~--------------------~~~~gh~~~V~svafS-pdg~~lasgs~Dg~I~i~~~~~~~  536 (630)
                      ++|+|||+.+++....+..                    ....+|...+.++.|. |+++.+++++.|+++++|+.....
T Consensus       209 ~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~  288 (393)
T 4gq1_A          209 GNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANN  288 (393)
T ss_dssp             SEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC----
T ss_pred             CEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCC
Confidence            9999999988765433210                    1124677788888886 899999999999999777654322


Q ss_pred             cccccccCccccccEEEeCC-CCceEEeccCCCCEEEEEEcCC---CeEEEEECCCcEEEEeCCCCcEEEEEe-cCCceE
Q 006825          537 NRKSLSLDHMVVPETVFALS-DKPICSFQGHLDDVLDLSWSKS---QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYDI  611 (630)
Q Consensus       537 ~~~s~s~d~~i~~~~Vwdls-gk~l~tL~GHs~~V~sLafSPd---~~LaSgS~DgtVrIWDl~tg~~l~t~~-H~~~V~  611 (630)
                      ....+....    ..++... ......+..+...+. ..|+|.   .++++|+.|++|+|||+.+++++..+. |...|+
T Consensus       289 ~~~~l~~~~----~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~  363 (393)
T 4gq1_A          289 DYNEISDST----MKLGPKNLLPNVQGISLFPSLLG-ACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIV  363 (393)
T ss_dssp             -------------------CCSCSEEEECSSCCSSC-CEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEE
T ss_pred             CCceEeeec----CccccEEEccccccccccCccee-EEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEE
Confidence            111111000    0111111 112223333333333 344442   356788899999999999999888776 999999


Q ss_pred             EEE-cCCCcEEEEecceec
Q 006825          612 SLV-DRLMLRFAYGAFLNV  629 (630)
Q Consensus       612 sVa-s~~~~~lAsgs~~nI  629 (630)
                      +|+ +|++..||+++...+
T Consensus       364 svafspdG~~LA~as~~Gv  382 (393)
T 4gq1_A          364 DFCWHQDGSHLAIATEGSV  382 (393)
T ss_dssp             EEEECTTSSEEEEEESSEE
T ss_pred             EEEEcCCCCEEEEEeCCCe
Confidence            999 999999999976554

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.95  E-value=1.3e-25  Score=229.83  Aligned_cols=225  Identities=13%  Similarity=0.017  Sum_probs=190.6

Q ss_pred             eeeecCccceeEEEeec----ceEeecCCCccEecccC-CCCceeEEecCC--ccCCEEEEEEcCCCCeEEeecCCC---
Q 006825          333 EMCVGHSPIVQELMRRQ----NVEEGNKDSFDLNNNGS-SGGGMKSKKKGS--WFKSIRTVASSVTGHKERRSSDER---  402 (630)
Q Consensus       333 ~~l~GHs~~V~~Lafs~----~laSgS~D~tvr~vWD~-~tG~~~~~lk~g--H~~~V~sVAfSpdG~~lasgS~D~---  402 (630)
                      ..+.+|...|.+++|+|    .|++|+.|++++ +||+ .+++. ..+. +  |...|.+++|+| +.++++++.|+   
T Consensus        50 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~-~wd~~~~~~~-~~~~-~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~  125 (342)
T 1yfq_A           50 LQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEIL-KVDLIGSPSF-QALT-NNEANLGICRICKYG-DDKLIAASWDGLIE  125 (342)
T ss_dssp             EEEEECSSCEEEEEEEESSSEEEEEEETTSCEE-EECSSSSSSE-EECB-SCCCCSCEEEEEEET-TTEEEEEETTSEEE
T ss_pred             eeeeecCCceEEEEECCCCCcEEEEEcCCCeEE-EEEeccCCce-Eecc-ccCCCCceEEEEeCC-CCEEEEEcCCCeEE
Confidence            34558999999999987    499999999999 9999 87755 5666 7  999999999999 99999999887   


Q ss_pred             --C--C---------cc---ccCCcceEEEeecCCCeEEEecCCcEEEEEeCCC-CcccceeeeeEecccCcCEEEEEEc
Q 006825          403 --D--T---------SS---EKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSC-KDLTALYKCQEIQAHNGSIWSIKFS  465 (630)
Q Consensus       403 --d--t---------~s---~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~-~el~~~~~v~tL~gHt~~V~sVaFS  465 (630)
                        +  +         ..   ...|...|.++.+.++.+++++.++.|++|++.. ....   .......|...|.+++|+
T Consensus       126 iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~---~~~~~~~~~~~i~~i~~~  202 (342)
T 1yfq_A          126 VIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDN---GTIEESGLKYQIRDVALL  202 (342)
T ss_dssp             EECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTCC---CEEEECSCSSCEEEEEEC
T ss_pred             EEcccccccccccccCCeeeEEeeCCceEEEEecCCcEEEEeCCCeEEEEECCcccccc---ceeeecCCCCceeEEEEC
Confidence              1  1         11   2237888999999999999999999999999976 4321   233456789999999999


Q ss_pred             c-CCCEEEEEeCCCcEEEEECcCC------ceeeeeecccccCc---------ccceEEEEECCCCCEEEEeeCCCeeee
Q 006825          466 L-DGRYLASAGEDCVIHVWQVVES------ERKGELLEKQEDGH---------LNMLLLANGSPEPTSLSPKHLDNHLEK  529 (630)
Q Consensus       466 p-DG~~LASgS~DgtIrVWDl~tg------~~~~~l~~~~~~gh---------~~~V~svafSpdg~~lasgs~Dg~I~i  529 (630)
                      | ++++|++++.|+.|+||++...      .....+     ..|         ...|.+++|+|++.+|++++.|+.|  
T Consensus       203 ~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i--  275 (342)
T 1yfq_A          203 PKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAF-----RCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGII--  275 (342)
T ss_dssp             SGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEE-----ECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCE--
T ss_pred             CCCCCEEEEEecCCcEEEEEEcCCCcccccccceee-----ecccccccccccceeEEEEEEcCCCCEEEEecCCceE--
Confidence            9 9999999999999999999876      444443     344         4499999999999999999999999  


Q ss_pred             ecccccccccccccCccccccEEEeC-CCCceEEeccC-CCCEEEEEEcCC-CeEEEEECCCc-EEEEe
Q 006825          530 KRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGH-LDDVLDLSWSKS-QHLLSSSMDKT-VRLWH  594 (630)
Q Consensus       530 ~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL~GH-s~~V~sLafSPd-~~LaSgS~Dgt-VrIWD  594 (630)
                                           ++|++ +++++.++.+| ...|++++  |+ .+|++++.|++ .+.|.
T Consensus       276 ---------------------~vwd~~~~~~~~~~~~~h~~~v~~~~--~~~~~l~s~s~Dg~~~~~~~  321 (342)
T 1yfq_A          276 ---------------------SCWNLQTRKKIKNFAKFNEDSVVKIA--CSDNILCLATSDDTFKTNAA  321 (342)
T ss_dssp             ---------------------EEEETTTTEEEEECCCCSSSEEEEEE--ECSSEEEEEEECTHHHHCSS
T ss_pred             ---------------------EEEcCccHhHhhhhhcccCCCceEec--CCCCeEEEEecCCccccccc
Confidence                                 88888 68889999998 99999999  88 99999999999 66665

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.95  E-value=9e-26  Score=227.96  Aligned_cols=230  Identities=17%  Similarity=0.196  Sum_probs=190.2

Q ss_pred             EecCCccCCEEEEEEcCCCCeEEeecCCC-------CCc--------cccCCcceEEEeecCC--Ce--EEEecCCcEEE
Q 006825          374 KKKGSWFKSIRTVASSVTGHKERRSSDER-------DTS--------SEKGGRRSSSATDDSQ--DV--SFHGQERVRVR  434 (630)
Q Consensus       374 ~lk~gH~~~V~sVAfSpdG~~lasgS~D~-------dt~--------s~~gh~~~Vsa~~~s~--d~--l~Sgs~Dg~Vr  434 (630)
                      .++ +|...|++++|+|+|++|++++.|+       ++.        .+.+|...|.+++|++  ++  +++++.|++|+
T Consensus         6 ~~~-gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~   84 (351)
T 3f3f_A            6 FDS-GHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVK   84 (351)
T ss_dssp             EEC-CCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEE
T ss_pred             cCc-ccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEE
Confidence            345 9999999999999999999999887       211        1468999999999987  24  99999999999


Q ss_pred             EEeCCCCccc----ceeeeeEecccCcCEEEEEEccC--CCEEEEEeCCCcEEEEECcCCceeeeee--------ccccc
Q 006825          435 QYGKSCKDLT----ALYKCQEIQAHNGSIWSIKFSLD--GRYLASAGEDCVIHVWQVVESERKGELL--------EKQED  500 (630)
Q Consensus       435 iWd~~~~el~----~~~~v~tL~gHt~~V~sVaFSpD--G~~LASgS~DgtIrVWDl~tg~~~~~l~--------~~~~~  500 (630)
                      +|++..++..    ...++..+.+|...|.+++|+|+  +++|++++.|++|++||+.+++.+..+.        .....
T Consensus        85 vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~  164 (351)
T 3f3f_A           85 LWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPA  164 (351)
T ss_dssp             EEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCS
T ss_pred             EEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccC
Confidence            9999775321    12356788999999999999999  9999999999999999998887654431        11123


Q ss_pred             CcccceEEEEECCC---CCEEEEeeCCCeeeeecccccccccccccCccccccEEEeC-CCC--ceEEeccCCCCEEEEE
Q 006825          501 GHLNMLLLANGSPE---PTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDK--PICSFQGHLDDVLDLS  574 (630)
Q Consensus       501 gh~~~V~svafSpd---g~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk--~l~tL~GHs~~V~sLa  574 (630)
                      +|...+.+++|+|+   +.++++++.++.+                       .+|.. .++  .+..+.+|...|++++
T Consensus       165 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~h~~~i~~~~  221 (351)
T 3f3f_A          165 NHLQSDFCLSWCPSRFSPEKLAVSALEQAI-----------------------IYQRGKDGKLHVAAKLPGHKSLIRSIS  221 (351)
T ss_dssp             SCSCCCEEEEECCCSSSCCEEEEEETTEEE-----------------------EEEECTTSCEEEEEECCCCCSCEEEEE
T ss_pred             CcccceeEEEeccCCCCCcEEEEecCCCcE-----------------------EEEccCCCceeeeeecCCCCcceeEEE
Confidence            67889999999997   9999999999988                       44544 333  3778889999999999


Q ss_pred             EcCC-----CeEEEEECCCcEEEEeCCCC----------------------------------------------cEEEE
Q 006825          575 WSKS-----QHLLSSSMDKTVRLWHLSSK----------------------------------------------TCLKI  603 (630)
Q Consensus       575 fSPd-----~~LaSgS~DgtVrIWDl~tg----------------------------------------------~~l~t  603 (630)
                      |+|+     .+|++|+.|++|+|||+.++                                              +++..
T Consensus       222 ~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (351)
T 3f3f_A          222 WAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSE  301 (351)
T ss_dssp             ECCCSSCSSEEEEEEETTSCEEEEEEEECC---------------------------------------CCSEEEEEEEE
T ss_pred             ECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEE
Confidence            9998     38999999999999999875                                              67777


Q ss_pred             Ee-cCCceEEEE-cCCCcEEEEecce
Q 006825          604 FS-HSDYDISLV-DRLMLRFAYGAFL  627 (630)
Q Consensus       604 ~~-H~~~V~sVa-s~~~~~lAsgs~~  627 (630)
                      +. |...|++++ ++++..+++++.+
T Consensus       302 ~~~h~~~v~~~~~s~~~~~l~s~~~d  327 (351)
T 3f3f_A          302 HDDHNGEVWSVSWNLTGTILSSAGDD  327 (351)
T ss_dssp             ECTTSSCEEEEEECSSSCCEEEEETT
T ss_pred             EecccccEEEEEEcCCCCEEEEecCC
Confidence            77 999999999 8888888888754

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.95  E-value=8e-26  Score=233.33  Aligned_cols=229  Identities=18%  Similarity=0.180  Sum_probs=188.1

Q ss_pred             CceeEEecCCccCCEEEEEEcCCCCeEEeecCCC-----CC--------ccccCCcceEEEeecCCC----eEEEecCCc
Q 006825          369 GGMKSKKKGSWFKSIRTVASSVTGHKERRSSDER-----DT--------SSEKGGRRSSSATDDSQD----VSFHGQERV  431 (630)
Q Consensus       369 G~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~-----dt--------~s~~gh~~~Vsa~~~s~d----~l~Sgs~Dg  431 (630)
                      |+.+..++ +|...|.+++|+|+|++|++++.|+     +.        ..+.+|...|.++.++++    .+++++.|+
T Consensus         1 G~~~~~~~-~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg   79 (379)
T 3jrp_A            1 GSMVVIAN-AHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDG   79 (379)
T ss_dssp             ----CCEE-ECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTS
T ss_pred             CCccEEec-CCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCC
Confidence            45566677 9999999999999999999999887     11        127789999999999854    399999999


Q ss_pred             EEEEEeCCCCcccceeeeeEecccCcCEEEEEEccC--CCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEE
Q 006825          432 RVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLD--GRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLA  509 (630)
Q Consensus       432 ~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpD--G~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~sv  509 (630)
                      .|++||+..++.   ..+..+.+|...|++++|+|+  +++|++++.|++|++||+.++.....+.   ..+|...|.++
T Consensus        80 ~v~iwd~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~---~~~~~~~v~~~  153 (379)
T 3jrp_A           80 KVLIWKEENGRW---SQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPII---IDAHAIGVNSA  153 (379)
T ss_dssp             CEEEEEEETTEE---EEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEE---EECCTTCEEEE
T ss_pred             EEEEEEcCCCce---eEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEE---ecCCCCceEEE
Confidence            999999876642   246778899999999999999  9999999999999999998875443321   46888999999


Q ss_pred             EECC-------------CCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeC-CC----CceEEeccCCCCEE
Q 006825          510 NGSP-------------EPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SD----KPICSFQGHLDDVL  571 (630)
Q Consensus       510 afSp-------------dg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sg----k~l~tL~GHs~~V~  571 (630)
                      +|+|             ++.++++++.|+.|                       ++|++ .+    .++..+.+|...|+
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i-----------------------~i~d~~~~~~~~~~~~~~~~h~~~v~  210 (379)
T 3jrp_A          154 SWAPATIEEDGEHNGTKESRKFVTGGADNLV-----------------------KIWKYNSDAQTYVLESTLEGHSDWVR  210 (379)
T ss_dssp             EECCCC----------CTTCEEEEEETTSCE-----------------------EEEEEETTTTEEEEEEEECCCSSCEE
T ss_pred             EEcCccccccccccCCCCCCEEEEEeCCCeE-----------------------EEEEecCCCcceeeEEEEecccCcEe
Confidence            9999             69999999999999                       66666 23    24567889999999


Q ss_pred             EEEEcCC----CeEEEEECCCcEEEEeCCCCc---EEEEEe---cCCceEEEE-cCCCcEEEEecce
Q 006825          572 DLSWSKS----QHLLSSSMDKTVRLWHLSSKT---CLKIFS---HSDYDISLV-DRLMLRFAYGAFL  627 (630)
Q Consensus       572 sLafSPd----~~LaSgS~DgtVrIWDl~tg~---~l~t~~---H~~~V~sVa-s~~~~~lAsgs~~  627 (630)
                      +++|+|+    .+|++++.|++|+|||+.++.   ....+.   |...|++++ ++++..+++++.+
T Consensus       211 ~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d  277 (379)
T 3jrp_A          211 DVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGD  277 (379)
T ss_dssp             EEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESS
T ss_pred             EEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCC
Confidence            9999997    589999999999999999874   223332   889999999 8888888877543

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.94  E-value=8.7e-26  Score=235.20  Aligned_cols=216  Identities=9%  Similarity=0.000  Sum_probs=166.6

Q ss_pred             CCceeEEEEcCCCceEeeecceeeecCccceeEEEeecceEeecCCCccEecccCC---------CCceeEEecCCccCC
Q 006825          312 DGTWKKVKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQNVEEGNKDSFDLNNNGSS---------GGGMKSKKKGSWFKS  382 (630)
Q Consensus       312 dg~~~~l~dv~TG~~lt~eef~~l~GHs~~V~~Lafs~~laSgS~D~tvr~vWD~~---------tG~~~~~lk~gH~~~  382 (630)
                      ||. .++|++.+|+.+     .++.  ...|..+.|.|.+++++.|++++ +|+..         +++.+.....+|...
T Consensus        57 Dg~-v~iwd~~~~~~~-----~~~~--~~~v~~~~~~~~~~s~s~D~~i~-~w~~~~~~~~~~~~~~~~~~~~~~~~~~~  127 (343)
T 3lrv_A           57 DGA-LHFTQLKDSKTI-----TTIT--TPNPRTGGEHPAIISRGPCNRLL-LLYPGNQITILDSKTNKVLREIEVDSANE  127 (343)
T ss_dssp             TTE-EEEEEESSSSCE-----EEEE--EECCCTTCCCCSEEEECSTTEEE-EEETTTEEEEEETTTCCEEEEEECCCSSC
T ss_pred             CCc-EEEEECCCCcEE-----EEEe--cCCceeeeeCCceEEecCCCeEE-EEEccCceEEeecCCcceeEEeecCCCCC
Confidence            444 557777777666     3332  46788888888899999999999 99654         666666666688899


Q ss_pred             EEEEEEcC--CCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEe-cccCcCE
Q 006825          383 IRTVASSV--TGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEI-QAHNGSI  459 (630)
Q Consensus       383 V~sVAfSp--dG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL-~gHt~~V  459 (630)
                      |.+++|+|  +|+++                             ++++.|++|++||+.+++.     .+.+ ..|...|
T Consensus       128 v~~~~~~~~~~~~~l-----------------------------~s~s~dg~i~~wd~~~~~~-----~~~~~~~~~~~i  173 (343)
T 3lrv_A          128 IIYMYGHNEVNTEYF-----------------------------IWADNRGTIGFQSYEDDSQ-----YIVHSAKSDVEY  173 (343)
T ss_dssp             EEEEECCC---CCEE-----------------------------EEEETTCCEEEEESSSSCE-----EEEECCCSSCCC
T ss_pred             EEEEEcCCCCCCCEE-----------------------------EEEeCCCcEEEEECCCCcE-----EEEEecCCCCce
Confidence            99999999  88766                             4556778899999987653     3334 3456689


Q ss_pred             EEEEEccCCCEEEEEeCCCcEEEEECcCCcee-eeeecccccC-cccceEEEEECCCCCEEEEeeCCCeeeeeccccccc
Q 006825          460 WSIKFSLDGRYLASAGEDCVIHVWQVVESERK-GELLEKQEDG-HLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSIN  537 (630)
Q Consensus       460 ~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~-~~l~~~~~~g-h~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~  537 (630)
                      .+++|+|+|++||+|+.|++|+|||+.+++.+ ..+     .+ |...|.+++|+|++.+|++++.+ .|          
T Consensus       174 ~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~-----~~~h~~~v~~l~fs~~g~~l~s~~~~-~v----------  237 (343)
T 3lrv_A          174 SSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRF-----PVDEEAKIKEVKFADNGYWMVVECDQ-TV----------  237 (343)
T ss_dssp             CEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEEC-----CCCTTSCEEEEEECTTSSEEEEEESS-BE----------
T ss_pred             EEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEE-----eccCCCCEEEEEEeCCCCEEEEEeCC-eE----------
Confidence            99999999999999999999999999998876 453     45 99999999999999999999844 88          


Q ss_pred             ccccccCccccccEEEeC-CCCceEEec---cCCCCEE--EEEEcCC-CeEEEEEC-CCcEEEEeCCCCc
Q 006825          538 RKSLSLDHMVVPETVFAL-SDKPICSFQ---GHLDDVL--DLSWSKS-QHLLSSSM-DKTVRLWHLSSKT  599 (630)
Q Consensus       538 ~~s~s~d~~i~~~~Vwdl-sgk~l~tL~---GHs~~V~--sLafSPd-~~LaSgS~-DgtVrIWDl~tg~  599 (630)
                                   ++|++ +++.+.++.   .|...+.  +++|+|+ .+|++++. |+.|+||++....
T Consensus       238 -------------~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~  294 (343)
T 3lrv_A          238 -------------VCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKT  294 (343)
T ss_dssp             -------------EEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTT
T ss_pred             -------------EEEEcCCCCcceeecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEcccc
Confidence                         67776 444444333   3444454  6999999 99999999 9999999996653

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.94  E-value=7.8e-26  Score=241.50  Aligned_cols=221  Identities=11%  Similarity=0.058  Sum_probs=162.4

Q ss_pred             eEEEEcCCCceEeeecceeeecCccceeEEEeec-----------ceEeecCCCccEecccCCCCceeEEecCCccCCEE
Q 006825          316 KKVKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQ-----------NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIR  384 (630)
Q Consensus       316 ~~l~dv~TG~~lt~eef~~l~GHs~~V~~Lafs~-----------~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~  384 (630)
                      .+||+..+++..+...+..+.||+..|+.|+|+|           .|||||.|+|+| |||+.++.++..+. +|...|.
T Consensus       113 v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~-~Wd~~~~~~~~~~~-~~~~~v~  190 (393)
T 4gq1_A          113 VRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLI-IWRLTDEGPILAGY-PLSSPGI  190 (393)
T ss_dssp             EEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEE-EEEEETTEEEEEEE-ECSSCEE
T ss_pred             EEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEE-EEECCCCceeeeec-CCCCCcE
Confidence            5677777777776666788999999999999986           799999999999 99999999888888 8999999


Q ss_pred             EEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccce------------------
Q 006825          385 TVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTAL------------------  446 (630)
Q Consensus       385 sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~------------------  446 (630)
                      +|+|+|++..+                            +++++.|++|++||+.+++....                  
T Consensus       191 ~v~~~p~~~~~----------------------------l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~  242 (393)
T 4gq1_A          191 SVQFRPSNPNQ----------------------------LIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTL  242 (393)
T ss_dssp             EEEEETTEEEE----------------------------EEEEETTSEEEEEETTCCC----------CSCCCSEEEESG
T ss_pred             EEEECCCCCce----------------------------EEecCCCCEEEEEECCCCcccccccccCCcccceEEecccc
Confidence            99999986422                            36777888999999876642111                  


Q ss_pred             --eeeeEecccCcCEEEEEEc-cCCCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEE-------------
Q 006825          447 --YKCQEIQAHNGSIWSIKFS-LDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLAN-------------  510 (630)
Q Consensus       447 --~~v~tL~gHt~~V~sVaFS-pDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~sva-------------  510 (630)
                        .......+|...|.+++|+ +||++|++++.|++|+|||+..+.....+     ..|...+..+.             
T Consensus       243 ~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l-----~~~~~~~~~~~~~~~~~~~~~~~~  317 (393)
T 4gq1_A          243 PLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEI-----SDSTMKLGPKNLLPNVQGISLFPS  317 (393)
T ss_dssp             GGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC------------------------CCSCSEEEECSSCC
T ss_pred             cceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceE-----eeecCccccEEEccccccccccCc
Confidence              0112346899999999997 79999999999999999999887765553     33333333332             


Q ss_pred             -----ECC--CCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeC-CCCceEEeccCCCCEEEEEEcCC-CeE
Q 006825          511 -----GSP--EPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSWSKS-QHL  581 (630)
Q Consensus       511 -----fSp--dg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL~GHs~~V~sLafSPd-~~L  581 (630)
                           ++|  ++.++++++.|+.|                       ++|+. +++++..+.+|...|.+|+|+|+ ++|
T Consensus       318 ~~~~~~~~~~~~~~~~sgs~Dg~V-----------------------~lwd~~~~~~~~~~~~~~~~V~svafspdG~~L  374 (393)
T 4gq1_A          318 LLGACPHPRYMDYFATAHSQHGLI-----------------------QLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHL  374 (393)
T ss_dssp             SSCCEECSSCTTEEEEEETTTTEE-----------------------EEEETTCTTCCEEEEECSSCEEEEEECTTSSEE
T ss_pred             ceeEEEccCCCCEEEEEECCCCEE-----------------------EEEECCCCcEEEEecCCCCcEEEEEEcCCCCEE
Confidence                 332  34466777788888                       88888 67888888999999999999999 999


Q ss_pred             EEEECCCcEEEEeC
Q 006825          582 LSSSMDKTVRLWHL  595 (630)
Q Consensus       582 aSgS~DgtVrIWDl  595 (630)
                      |+++.|| |.||.+
T Consensus       375 A~as~~G-v~lvrL  387 (393)
T 4gq1_A          375 AIATEGS-VLLTRL  387 (393)
T ss_dssp             EEEESSE-EEEEEE
T ss_pred             EEEeCCC-eEEEEE
Confidence            9998776 556654

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.94  E-value=1.3e-25  Score=251.69  Aligned_cols=244  Identities=8%  Similarity=-0.043  Sum_probs=193.3

Q ss_pred             ccceeEEEeec---ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCC-CCC-cc-ccCCcc
Q 006825          339 SPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDE-RDT-SS-EKGGRR  412 (630)
Q Consensus       339 s~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D-~dt-~s-~~gh~~  412 (630)
                      ...|.+|+|+|   .+||+|.|+||+   |..+++++   + ||.+.|.+|+|+|+|. .-...-+ .+. .. ...|..
T Consensus        15 ~~~v~sv~~SpDG~~iASas~D~TV~---d~~~~~~l---~-gh~~~v~~V~FsPdg~-~~~~~~~~~~~~~~~~~~~~~   86 (588)
T 2j04_A           15 EDWKNNLTWARDGTLYLTTFPDISIG---QPKYAKDI---N-CNSKNLFHVKEFPLEF-ENKLDFELAQQNGLLNSQPVC   86 (588)
T ss_dssp             SSSSCCEEECTTSCEEEECSSSEEEE---EECCCSCC---S-SBGGGTEEEEEECCCC-CCTTTTSCCCSSCSSTTSCSC
T ss_pred             hccEEEEEECCCCCEEEEEcCCceee---ccccccee---c-CCCccEEEEEECCCCC-cceEEEEeCCCceEeecCCCC
Confidence            46799999999   899999999999   56666544   6 9999999999999992 1000000 011 11 225688


Q ss_pred             eEEEeecCCCe--EEEecCCcEEEEEeCCCCcccceeeeeEecccCc-----CEEEEEEccCCCEEEEEeCCCcEEEEEC
Q 006825          413 SSSATDDSQDV--SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNG-----SIWSIKFSLDGRYLASAGEDCVIHVWQV  485 (630)
Q Consensus       413 ~Vsa~~~s~d~--l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~-----~V~sVaFSpDG~~LASgS~DgtIrVWDl  485 (630)
                      .|.++++++++  +++++.|+.|++|+...       ++..+. |..     .|.+++|||||++||+|+.||+|+|||+
T Consensus        87 ~V~~vawSPdG~~LAs~s~dg~V~iwd~~~-------~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~  158 (588)
T 2j04_A           87 YPRVCKPSPIDDWMAVLSNNGNVSVFKDNK-------MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSI  158 (588)
T ss_dssp             CEEEEEECSSSSCEEEEETTSCEEEEETTE-------EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEEC
T ss_pred             cEEEEEECCCCCEEEEEeCCCcEEEEeCCc-------eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEEC
Confidence            89999999999  99999999999999543       456677 776     4999999999999999999999999999


Q ss_pred             cCCce-------eeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeCCCC
Q 006825          486 VESER-------KGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDK  558 (630)
Q Consensus       486 ~tg~~-------~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk  558 (630)
                      .++..       +.++ .....+|...|.+++|+|+|  +++++.|+.|                       ++|++.+.
T Consensus       159 ~~~~l~~~~~i~l~ti-~~~~~gh~~~V~sVawSPdg--Laass~D~tV-----------------------rlWd~~~~  212 (588)
T 2j04_A          159 RKNSENTPEFYFESSI-RLSDAGSKDWVTHIVWYEDV--LVAALSNNSV-----------------------FSMTVSAS  212 (588)
T ss_dssp             CCCTTTCCCCEEEEEE-ECSCTTCCCCEEEEEEETTE--EEEEETTCCE-----------------------EEECCCSS
T ss_pred             CCCccccccceeeeee-ecccccccccEEEEEEcCCc--EEEEeCCCeE-----------------------EEEECCCC
Confidence            88753       2332 12236788999999999999  7788899999                       78888443


Q ss_pred             c----eEEe-ccCCCCEEEEEEcCCCeEEEEECCCcEEEEeCCCCcEE-EEEecCCceEEEE---cCCCcEEEEecc
Q 006825          559 P----ICSF-QGHLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCL-KIFSHSDYDISLV---DRLMLRFAYGAF  626 (630)
Q Consensus       559 ~----l~tL-~GHs~~V~sLafSPd~~LaSgS~DgtVrIWDl~tg~~l-~t~~H~~~V~sVa---s~~~~~lAsgs~  626 (630)
                      .    .+++ .+|...|.+++|+ +++||+++ |++|++||+.+++.. ..+.|.+.|+.|+   ++++..++++..
T Consensus       213 ~~~~~~~tL~~~h~~~V~svaFs-g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~e  287 (588)
T 2j04_A          213 SHQPVSRMIQNASRRKITDLKIV-DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNK  287 (588)
T ss_dssp             SSCCCEEEEECCCSSCCCCEEEE-TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSS
T ss_pred             ccccceeeecccccCcEEEEEEE-CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcC
Confidence            3    3567 4899999999999 78999987 799999999988874 4446999999999   777778888763

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.94  E-value=4e-25  Score=232.81  Aligned_cols=232  Identities=9%  Similarity=0.010  Sum_probs=160.1

Q ss_pred             eEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCC------CCc--c---ccCCcceEEEeec
Q 006825          351 VEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDER------DTS--S---EKGGRRSSSATDD  419 (630)
Q Consensus       351 laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~------dt~--s---~~gh~~~Vsa~~~  419 (630)
                      +++|+.|++++ +||..+|+.+.++.  |...|++++|++++..  .+.++.      .+.  .   ... ...+.++..
T Consensus        74 ~~~~~~d~~v~-iWd~~~~~~~~~~~--~~~~v~~v~~~~~~~~--~~~~~~i~i~d~~~~~~~~~~~~~-~~~~~~~s~  147 (355)
T 3vu4_A           74 AFVTGVKEVVH-IWDDVKKQDVSRIK--VDAPVKDLFLSREFIV--VSYGDVISVFKFGNPWKRITDDIR-FGGVCEFSN  147 (355)
T ss_dssp             EEECSSTTEEE-EEETTTTEEEEEEE--CSSCEEEEEECSSEEE--EEETTEEEEEESSTTCCBSSCCEE-EEEEEEEET
T ss_pred             EEEECCccEEE-EEECCCCcEEEEEE--CCCceEEEEEcCCEEE--EEEcCEEEEEECCCCceeeEEecc-CCceEEEEc
Confidence            46778888999 99999999888886  5668999999886533  333332      111  0   111 222333333


Q ss_pred             CCCeE-EE-ecCCcEEEEEeCCCCcc----------cceee-eeEecccCcCEEEEEEccCCCEEEEEeCCCc-EEEEEC
Q 006825          420 SQDVS-FH-GQERVRVRQYGKSCKDL----------TALYK-CQEIQAHNGSIWSIKFSLDGRYLASAGEDCV-IHVWQV  485 (630)
Q Consensus       420 s~d~l-~S-gs~Dg~VriWd~~~~el----------~~~~~-v~tL~gHt~~V~sVaFSpDG~~LASgS~Dgt-IrVWDl  485 (630)
                        ..+ ++ |..++.|++||+..+..          ..+.. ++.+.+|.+.|++|+|+|+|++||||+.|++ |+|||+
T Consensus       148 --~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~  225 (355)
T 3vu4_A          148 --GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKT  225 (355)
T ss_dssp             --TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEET
T ss_pred             --cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEEC
Confidence              443 33 78999999999976430          00112 6789999999999999999999999999999 999999


Q ss_pred             cCCceeeeeecccccC-cccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCcccccc---EEEeCCCCceE
Q 006825          486 VESERKGELLEKQEDG-HLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPE---TVFALSDKPIC  561 (630)
Q Consensus       486 ~tg~~~~~l~~~~~~g-h~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~---~Vwdlsgk~l~  561 (630)
                      .+++.+..+    ..+ |...|.+++|+|++++|++++.|++|++|+...............+.+.   ..|.+   ...
T Consensus       226 ~~~~~~~~~----~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~  298 (355)
T 3vu4_A          226 EDGVLVREF----RRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSL---CNF  298 (355)
T ss_dssp             TTCCEEEEE----ECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCS---EEE
T ss_pred             CCCcEEEEE----EcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccce---eEE
Confidence            999988885    235 8999999999999999999999999999987653221111111111110   11111   111


Q ss_pred             Ee-ccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCC
Q 006825          562 SF-QGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSS  597 (630)
Q Consensus       562 tL-~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~t  597 (630)
                      .+ .++...+..++|+++ ++|++++.||.+++|++..
T Consensus       299 ~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~  336 (355)
T 3vu4_A          299 KLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVF  336 (355)
T ss_dssp             ECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEE
T ss_pred             EeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEc
Confidence            11 123334577999999 8999999999999999765

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.94  E-value=3.5e-25  Score=234.93  Aligned_cols=225  Identities=14%  Similarity=0.062  Sum_probs=184.7

Q ss_pred             eeEEEeec----ceEeecCCCccEecccCCCC-c---eeEEecCCccCCEEEEEEcC-CCCeEEeecCCCCCccccCCcc
Q 006825          342 VQELMRRQ----NVEEGNKDSFDLNNNGSSGG-G---MKSKKKGSWFKSIRTVASSV-TGHKERRSSDERDTSSEKGGRR  412 (630)
Q Consensus       342 V~~Lafs~----~laSgS~D~tvr~vWD~~tG-~---~~~~lk~gH~~~V~sVAfSp-dG~~lasgS~D~dt~s~~gh~~  412 (630)
                      ...++++|    .+++++.|++++ +|++.+. +   ....+. +|...|.+++|+| +++++                 
T Consensus        37 ~~~~~~~~~~~~~~~~~~~~g~i~-v~~~~~~~~~~~~~~~~~-~h~~~V~~~~~~p~~~~~l-----------------   97 (402)
T 2aq5_A           37 SGFCAVNPKFMALICEASGGGAFL-VLPLGKTGRVDKNVPLVC-GHTAPVLDIAWCPHNDNVI-----------------   97 (402)
T ss_dssp             SCSEEECSSEEEEEBCCSSSCCEE-EEETTCCEECCTTCCCBC-CCSSCEEEEEECTTCTTEE-----------------
T ss_pred             CCcEEECCCeEEEEEEEcCCCEEE-EEECccCCCCCCCCceEe-cCCCCEEEEEeCCCCCCEE-----------------
Confidence            34467777    456789999999 9998654 2   344566 8999999999999 77666                 


Q ss_pred             eEEEeecCCCeEEEecCCcEEEEEeCCCCcccce--eeeeEecccCcCEEEEEEccCC-CEEEEEeCCCcEEEEECcCCc
Q 006825          413 SSSATDDSQDVSFHGQERVRVRQYGKSCKDLTAL--YKCQEIQAHNGSIWSIKFSLDG-RYLASAGEDCVIHVWQVVESE  489 (630)
Q Consensus       413 ~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~--~~v~tL~gHt~~V~sVaFSpDG-~~LASgS~DgtIrVWDl~tg~  489 (630)
                                  ++++.|++|++|++..+.+...  ..+..+.+|...|++|+|+|++ ++|++++.|++|+|||+.+++
T Consensus        98 ------------~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~  165 (402)
T 2aq5_A           98 ------------ASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGA  165 (402)
T ss_dssp             ------------EEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTE
T ss_pred             ------------EEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCC
Confidence                        5567788999999987642110  2467889999999999999998 699999999999999999988


Q ss_pred             eeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeC-CCCceEEe-ccCC
Q 006825          490 RKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSF-QGHL  567 (630)
Q Consensus       490 ~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL-~GHs  567 (630)
                      .+..+.   ..+|...|.+++|+|++.+|++++.|+.|                       ++|++ +++.+..+ .+|.
T Consensus       166 ~~~~~~---~~~~~~~v~~~~~~~~~~~l~~~~~d~~i-----------------------~iwd~~~~~~~~~~~~~~~  219 (402)
T 2aq5_A          166 AVLTLG---PDVHPDTIYSVDWSRDGALICTSCRDKRV-----------------------RVIEPRKGTVVAEKDRPHE  219 (402)
T ss_dssp             EEEEEC---TTTCCSCEEEEEECTTSSCEEEEETTSEE-----------------------EEEETTTTEEEEEEECSSC
T ss_pred             ccEEEe---cCCCCCceEEEEECCCCCEEEEEecCCcE-----------------------EEEeCCCCceeeeeccCCC
Confidence            776641   16789999999999999999999999999                       88888 67888888 7898


Q ss_pred             CC-EEEEEEcCC-CeEEEE---ECCCcEEEEeCCCCcE-EEE--EecCCceEEEE-cCCCcEEEE
Q 006825          568 DD-VLDLSWSKS-QHLLSS---SMDKTVRLWHLSSKTC-LKI--FSHSDYDISLV-DRLMLRFAY  623 (630)
Q Consensus       568 ~~-V~sLafSPd-~~LaSg---S~DgtVrIWDl~tg~~-l~t--~~H~~~V~sVa-s~~~~~lAs  623 (630)
                      .. +.+++|+|+ .+|++|   +.|++|+|||+.+++. +..  +.|...|.+++ ++++..++.
T Consensus       220 ~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~  284 (402)
T 2aq5_A          220 GTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYL  284 (402)
T ss_dssp             SSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEE
T ss_pred             CCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEE
Confidence            76 899999999 788888   7999999999998764 333  34888899999 888877754

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.94  E-value=6.6e-26  Score=262.92  Aligned_cols=237  Identities=14%  Similarity=0.131  Sum_probs=197.3

Q ss_pred             eeeecCccceeEEEeec---ceEeecCCCccEecccCC--CCceeEEecCCccCCEEEEEEcCC--CCeEEeecCCC---
Q 006825          333 EMCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSS--GGGMKSKKKGSWFKSIRTVASSVT--GHKERRSSDER---  402 (630)
Q Consensus       333 ~~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~--tG~~~~~lk~gH~~~V~sVAfSpd--G~~lasgS~D~---  402 (630)
                      ..+.||...|.+++|+|   .+++|+.|++|+ +||+.  ++..+.++. +|...|.+++|+|+  |+++++++.|+   
T Consensus         3 ~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~-vwd~~~~~~~~~~~l~-~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~   80 (753)
T 3jro_A            3 VIANAHNELIHDAVLDYYGKRLATCSSDKTIK-IFEVEGETHKLIDTLT-GHEGPVWRVDWAHPKFGTILASCSYDGKVL   80 (753)
T ss_dssp             -----CCCCEEEECCCSSSCCEEEEETTTEEE-EEEEETTEEEEEEEEC-CCSSCEEEEEECCTTSCSEEEEEETTSCEE
T ss_pred             eecccCcceeEEEEECCCCCeEEEEECCCcEE-EEecCCCCCccceecc-CCcCceEEEEecCCCCCCEEEEEeCCCeEE
Confidence            46789999999999998   799999999999 99998  567778888 99999999999998  99999999987   


Q ss_pred             ----CC------ccccCCcceEEEeecCCC--e--EEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEcc--
Q 006825          403 ----DT------SSEKGGRRSSSATDDSQD--V--SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSL--  466 (630)
Q Consensus       403 ----dt------~s~~gh~~~Vsa~~~s~d--~--l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSp--  466 (630)
                          .+      ....+|...|.++.++++  +  +++|+.|++|++||+..+...   ....+.+|...|.+++|+|  
T Consensus        81 vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~---~~~~~~~~~~~v~~l~~~p~~  157 (753)
T 3jro_A           81 IWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTT---SPIIIDAHAIGVNSASWAPAT  157 (753)
T ss_dssp             EEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCC---CCEEEECCSSCEEEEEECCCC
T ss_pred             EEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCc---ceeEeecCCCceEEEEecCcc
Confidence                11      226779999999999987  5  999999999999999876432   3456789999999999999  


Q ss_pred             -----------CCCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCC---CCEEEEeeCCCeeeeecc
Q 006825          467 -----------DGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPE---PTSLSPKHLDNHLEKKRR  532 (630)
Q Consensus       467 -----------DG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpd---g~~lasgs~Dg~I~i~~~  532 (630)
                                 ++++|++|+.||+|++||+.++.....+. ..+.+|...|.+++|+|+   +.++++++.|+.|     
T Consensus       158 ~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~-~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I-----  231 (753)
T 3jro_A          158 IEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLE-STLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTC-----  231 (753)
T ss_dssp             ---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEE-EEECCCSSCEEEEEECCCCSSSEEEEEEESSSCE-----
T ss_pred             cccccccccCCCCCEEEEEECCCeEEEEeccCCcccceee-eeecCCCCcEEEEEeccCCCCCCEEEEEecCCEE-----
Confidence                       59999999999999999998875432221 224789999999999999   9999999999999     


Q ss_pred             cccccccccccCccccccEEEeCC-CC-----ceEEeccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCCC
Q 006825          533 GRSINRKSLSLDHMVVPETVFALS-DK-----PICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSK  598 (630)
Q Consensus       533 ~~~~~~~s~s~d~~i~~~~Vwdls-gk-----~l~tL~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg  598 (630)
                                        ++|++. ++     .+....+|...|++++|+|+ .+|++|+.||+|+||++.++
T Consensus       232 ------------------~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~  286 (753)
T 3jro_A          232 ------------------IIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLE  286 (753)
T ss_dssp             ------------------EEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCSS
T ss_pred             ------------------EEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCC
Confidence                              556552 21     33344679999999999999 99999999999999999854

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.94  E-value=3.1e-25  Score=227.52  Aligned_cols=228  Identities=8%  Similarity=-0.046  Sum_probs=182.4

Q ss_pred             eeeecCccceeEEEeec---ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEE--cCCCCeEEeecCCC-----
Q 006825          333 EMCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVAS--SVTGHKERRSSDER-----  402 (630)
Q Consensus       333 ~~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAf--SpdG~~lasgS~D~-----  402 (630)
                      ..+.+|...|.+|+|+|   .|++++.|++++ +||+.+++.+. +. +|...|.+++|  +|+|+++++++.|+     
T Consensus        80 ~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~-iwd~~~~~~~~-~~-~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vw  156 (368)
T 3mmy_A           80 KAQQMHTGPVLDVCWSDDGSKVFTASCDKTAK-MWDLSSNQAIQ-IA-QHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFW  156 (368)
T ss_dssp             EEEEECSSCEEEEEECTTSSEEEEEETTSEEE-EEETTTTEEEE-EE-ECSSCEEEEEEEECSSCEEEEEEETTSEEEEE
T ss_pred             EEeccccCCEEEEEECcCCCEEEEEcCCCcEE-EEEcCCCCcee-ec-cccCceEEEEEEeCCCCCEEEEccCCCcEEEE
Confidence            45678999999999998   799999999999 99999998776 44 79999999999  99999999999887     


Q ss_pred             CCcc------ccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCE----EE
Q 006825          403 DTSS------EKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRY----LA  472 (630)
Q Consensus       403 dt~s------~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~----LA  472 (630)
                      +...      ...+ ..+.+..+....++.+..++.+++|+.......   .......+...+.++++.++...    |+
T Consensus       157 d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (368)
T 3mmy_A          157 DTRSSNPMMVLQLP-ERCYCADVIYPMAVVATAERGLIVYQLENQPSE---FRRIESPLKHQHRCVAIFKDKQNKPTGFA  232 (368)
T ss_dssp             CSSCSSCSEEEECS-SCEEEEEEETTEEEEEEGGGCEEEEECSSSCEE---EEECCCSCSSCEEEEEEEECTTSCEEEEE
T ss_pred             ECCCCcEEEEEecC-CCceEEEecCCeeEEEeCCCcEEEEEeccccch---hhhccccccCCCceEEEcccCCCCCCeEE
Confidence            2111      3333 356666677778889999999999999765321   11122334556677777666554    99


Q ss_pred             EEeCCCcEEEEECcCCc---eeeeeecccccCccc------------ceEEEEECCCCCEEEEeeCCCeeeeeccccccc
Q 006825          473 SAGEDCVIHVWQVVESE---RKGELLEKQEDGHLN------------MLLLANGSPEPTSLSPKHLDNHLEKKRRGRSIN  537 (630)
Q Consensus       473 SgS~DgtIrVWDl~tg~---~~~~l~~~~~~gh~~------------~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~  537 (630)
                      +++.|+.|++|++....   ....+     .+|..            .|.+++|+|++.+|++++.|+.|          
T Consensus       233 ~~~~dg~i~i~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i----------  297 (368)
T 3mmy_A          233 LGSIEGRVAIHYINPPNPAKDNFTF-----KCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRF----------  297 (368)
T ss_dssp             EEETTSEEEEEESSCSCHHHHSEEE-----ECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCE----------
T ss_pred             EecCCCcEEEEecCCCCccccceee-----eeeecccccccccccccceEEEEEecCCCEEEEEccCCeE----------
Confidence            99999999999998773   33332     44544            79999999999999999999999          


Q ss_pred             ccccccCccccccEEEeC-CCCceEEeccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeC
Q 006825          538 RKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHL  595 (630)
Q Consensus       538 ~~s~s~d~~i~~~~Vwdl-sgk~l~tL~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl  595 (630)
                                   ++|++ +++++.++.+|...|++++|+|+ .+|++++.|+..+.|++
T Consensus       298 -------------~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d~~~~~~~~  344 (368)
T 3mmy_A          298 -------------SFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKGHEF  344 (368)
T ss_dssp             -------------EEEETTTTEEEEECCCCSSCEEEEEECTTSSCEEEEECCCSTTCGGG
T ss_pred             -------------EEEECCCCcEEEEecCCCCCceEEEECCCCCeEEEEecccccccccc
Confidence                         88888 68899999999999999999999 99999999986665554

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.94  E-value=1.8e-24  Score=233.14  Aligned_cols=222  Identities=14%  Similarity=0.134  Sum_probs=173.5

Q ss_pred             ceeeecCccceeEEEeec----ceEeecCCCccEecccCCCCce-------eEEecCCccCCEEEEEEcCCCCeEEeecC
Q 006825          332 FEMCVGHSPIVQELMRRQ----NVEEGNKDSFDLNNNGSSGGGM-------KSKKKGSWFKSIRTVASSVTGHKERRSSD  400 (630)
Q Consensus       332 f~~l~GHs~~V~~Lafs~----~laSgS~D~tvr~vWD~~tG~~-------~~~lk~gH~~~V~sVAfSpdG~~lasgS~  400 (630)
                      ...+.+|...|.+|+|+|    .|++|+.|++|+ +||+.++..       ...+. +|...|.+++|+|++.       
T Consensus       174 ~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~-vwd~~~~~~~~~~~~~~~~~~-~h~~~v~~v~~~p~~~-------  244 (430)
T 2xyi_A          174 DLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTIC-LWDINATPKEHRVIDAKNIFT-GHTAVVEDVAWHLLHE-------  244 (430)
T ss_dssp             SEEEECCSSCCCCEEECTTSTTEEEEECTTSCEE-EEETTSCCBGGGEEECSEEEC-CCSSCEEEEEECSSCT-------
T ss_pred             cEEecCCCCCeEEEEeCCCCCCeEEEEeCCCeEE-EEeCCCCCCCCceeccceeec-CCCCCEeeeEEeCCCC-------
Confidence            378889999999999998    699999999999 999988432       45566 8999999999999432       


Q ss_pred             CCCCccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCC-EEEEEeCCCc
Q 006825          401 ERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGR-YLASAGEDCV  479 (630)
Q Consensus       401 D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~-~LASgS~Dgt  479 (630)
                                           ..+++++.|++|++||+.....  ...+..+.+|...|++|+|+|++. +|++|+.|++
T Consensus       245 ---------------------~~l~s~~~dg~i~i~d~~~~~~--~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~  301 (430)
T 2xyi_A          245 ---------------------SLFGSVADDQKLMIWDTRNNNT--SKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKT  301 (430)
T ss_dssp             ---------------------TEEEEEETTSEEEEEETTCSCS--SSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSE
T ss_pred             ---------------------CEEEEEeCCCeEEEEECCCCCC--CcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCe
Confidence                                 2246677889999999986531  124567789999999999999987 7999999999


Q ss_pred             EEEEECcCC-ceeeeeecccccCcccceEEEEECCCCC-EEEEeeCCCeeeeecccccccccccccCccccccEEEeCCC
Q 006825          480 IHVWQVVES-ERKGELLEKQEDGHLNMLLLANGSPEPT-SLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSD  557 (630)
Q Consensus       480 IrVWDl~tg-~~~~~l~~~~~~gh~~~V~svafSpdg~-~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsg  557 (630)
                      |+|||+.+. ..+..     +.+|...|.+++|+|++. ++++++.|+.|.+|+...........        ..-+...
T Consensus       302 v~vwd~~~~~~~~~~-----~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~--------~~~~~~~  368 (430)
T 2xyi_A          302 VALWDLRNLKLKLHS-----FESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTE--------DAEDGPP  368 (430)
T ss_dssp             EEEEETTCTTSCSEE-----EECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHH--------HHHHCCT
T ss_pred             EEEEeCCCCCCCeEE-----eecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCcc--------ccccCCc
Confidence            999999874 44444     367999999999999985 68999999999555543210000000        0000012


Q ss_pred             CceEEeccCCCCEEEEEEcCC-C-eEEEEECCCcEEEEeCCCC
Q 006825          558 KPICSFQGHLDDVLDLSWSKS-Q-HLLSSSMDKTVRLWHLSSK  598 (630)
Q Consensus       558 k~l~tL~GHs~~V~sLafSPd-~-~LaSgS~DgtVrIWDl~tg  598 (630)
                      +++..+.+|...|++++|+|+ . +|++++.|++|+||++...
T Consensus       369 ~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~  411 (430)
T 2xyi_A          369 ELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN  411 (430)
T ss_dssp             TEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred             ceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence            677788899999999999999 6 8999999999999998753

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.93  E-value=2.9e-24  Score=223.88  Aligned_cols=253  Identities=15%  Similarity=0.107  Sum_probs=198.8

Q ss_pred             cCCCccEecccCCCCceeEEecCCccCCEEEEEEcC-CCCeEEeecCCC-------CCcc----c-------------cC
Q 006825          355 NKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSV-TGHKERRSSDER-------DTSS----E-------------KG  409 (630)
Q Consensus       355 S~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSp-dG~~lasgS~D~-------dt~s----~-------------~g  409 (630)
                      +.+.+++ +|+..+++....++ +|.+.|.+++|+| +|+++++++.|+       ++..    .             .+
T Consensus        20 ~~~~~~~-v~~~~~~~~~~~~~-~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~   97 (408)
T 4a11_B           20 RAESTRR-VLGLELNKDRDVER-IHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDV   97 (408)
T ss_dssp             HHHHHHH-HHTEEECTTEEECC-CCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTC
T ss_pred             eccCcce-eeccccCcceeeee-ccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEecccccccccccccc
Confidence            3456788 99999999999988 8999999999999 999999999887       1111    1             36


Q ss_pred             CcceEEEeecCC-Ce--EEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEcc---CCCEEEEEeCCCcEEEE
Q 006825          410 GRRSSSATDDSQ-DV--SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSL---DGRYLASAGEDCVIHVW  483 (630)
Q Consensus       410 h~~~Vsa~~~s~-d~--l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSp---DG~~LASgS~DgtIrVW  483 (630)
                      |...|.++.+.+ +.  +++++.|+.|++|++.+++.     +..+. |...+.+++|++   ++.+|++++.|+.|++|
T Consensus        98 ~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~-----~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  171 (408)
T 4a11_B           98 HRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQT-----ADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLC  171 (408)
T ss_dssp             CSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEE-----EEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEE
T ss_pred             CCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCcc-----ceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEE
Confidence            999999999988 43  89999999999999987642     33443 888999999999   45599999999999999


Q ss_pred             ECcCCceeeeeecccccCcccceEEEEECCCCC-EEEEeeCCCeeeeecccccc-cccccccCccccccEEEeCCCCceE
Q 006825          484 QVVESERKGELLEKQEDGHLNMLLLANGSPEPT-SLSPKHLDNHLEKKRRGRSI-NRKSLSLDHMVVPETVFALSDKPIC  561 (630)
Q Consensus       484 Dl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~-~lasgs~Dg~I~i~~~~~~~-~~~s~s~d~~i~~~~Vwdlsgk~l~  561 (630)
                      |+.+++.+..+     .+|...|.+++|+|++. ++++++.|+.|++|+..... ....+......       .......
T Consensus       172 d~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~-------~~~~~~~  239 (408)
T 4a11_B          172 DLKSGSCSHIL-----QGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGK-------KSQAVES  239 (408)
T ss_dssp             ESSSSCCCEEE-----CCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTC-------SCCCTTT
T ss_pred             eCCCcceeeee-----cCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccc-------cceeecc
Confidence            99998877764     78999999999999998 58899999999666554311 11000000000       0011222


Q ss_pred             EeccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCCC------------------------------------------
Q 006825          562 SFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSK------------------------------------------  598 (630)
Q Consensus       562 tL~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg------------------------------------------  598 (630)
                      .+.+|...|++++|+|+ .+|++++.|++|++||+.++                                          
T Consensus       240 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~  319 (408)
T 4a11_B          240 ANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVY  319 (408)
T ss_dssp             SSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEE
T ss_pred             ccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEE
Confidence            33689999999999999 89999999999999998653                                          


Q ss_pred             -----cEEEEEe-cCCceEEEE-cCCCcEEEEecce
Q 006825          599 -----TCLKIFS-HSDYDISLV-DRLMLRFAYGAFL  627 (630)
Q Consensus       599 -----~~l~t~~-H~~~V~sVa-s~~~~~lAsgs~~  627 (630)
                           +++..+. |...|++++ ++++..+++++.+
T Consensus       320 d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d  355 (408)
T 4a11_B          320 TVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSRD  355 (408)
T ss_dssp             ETTTCCEEEEECCCSSCEEEEEEETTTTEEEEEETT
T ss_pred             ECcCCcceeeeccCCCeEEEEEEcCCCCEEEEECCC
Confidence                 5667777 999999999 8999999888654

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.93  E-value=3.5e-23  Score=216.89  Aligned_cols=253  Identities=13%  Similarity=0.021  Sum_probs=199.8

Q ss_pred             CCCceeEEEEcCCCceEeeecceeeecCccceeEEEeec---c-eEeecCCCccEecccCCCCceeEEecCCccCCEEEE
Q 006825          311 EDGTWKKVKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQ---N-VEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTV  386 (630)
Q Consensus       311 ~dg~~~~l~dv~TG~~lt~eef~~l~GHs~~V~~Lafs~---~-laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sV  386 (630)
                      .++ ..++|++.+|+.+     ..+.+|.. +..++|+|   . +++++.|++++ +||..+++.+..+. .|. .|.++
T Consensus        10 ~d~-~v~v~d~~~~~~~-----~~~~~~~~-~~~~~~s~dg~~l~~~~~~d~~i~-v~d~~~~~~~~~~~-~~~-~v~~~   79 (391)
T 1l0q_A           10 ESD-NISVIDVTSNKVT-----ATIPVGSN-PMGAVISPDGTKVYVANAHSNDVS-IIDTATNNVIATVP-AGS-SPQGV   79 (391)
T ss_dssp             TTT-EEEEEETTTTEEE-----EEEECSSS-EEEEEECTTSSEEEEEEGGGTEEE-EEETTTTEEEEEEE-CSS-SEEEE
T ss_pred             CCC-EEEEEECCCCeEE-----EEeecCCC-cceEEECCCCCEEEEECCCCCeEE-EEECCCCeEEEEEE-CCC-Cccce
Confidence            344 3679999999887     66677755 89999998   3 47888999999 99999999999887 443 99999


Q ss_pred             EEcCCCCeEE-eecCCC-----C--Ccc---ccCCcceEEEeecCCCe--E-EEecCCcEEEEEeCCCCcccceeeeeEe
Q 006825          387 ASSVTGHKER-RSSDER-----D--TSS---EKGGRRSSSATDDSQDV--S-FHGQERVRVRQYGKSCKDLTALYKCQEI  452 (630)
Q Consensus       387 AfSpdG~~la-sgS~D~-----d--t~s---~~gh~~~Vsa~~~s~d~--l-~Sgs~Dg~VriWd~~~~el~~~~~v~tL  452 (630)
                      +|+|+|++++ +++.+.     +  +..   ...+...+..+.+++++  + +++..++.|++||..+++     .+..+
T Consensus        80 ~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~-----~~~~~  154 (391)
T 1l0q_A           80 AVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKA-----VINTV  154 (391)
T ss_dssp             EECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTE-----EEEEE
T ss_pred             EECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCc-----EEEEE
Confidence            9999999875 455544     1  111   12233456788888886  4 788999999999998764     34556


Q ss_pred             cccCcCEEEEEEccCCCEE-EEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEee---CCCeee
Q 006825          453 QAHNGSIWSIKFSLDGRYL-ASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKH---LDNHLE  528 (630)
Q Consensus       453 ~gHt~~V~sVaFSpDG~~L-ASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs---~Dg~I~  528 (630)
                      ..| ..+.+++|+|+|++| ++++.|++|++||+.+++....+      .+...+..++|+|+++++++++   .++.| 
T Consensus       155 ~~~-~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~------~~~~~~~~~~~~~~g~~l~~~~~~~~~~~v-  226 (391)
T 1l0q_A          155 SVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTV------KVEAAPSGIAVNPEGTKAYVTNVDKYFNTV-  226 (391)
T ss_dssp             ECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE------ECSSEEEEEEECTTSSEEEEEEECSSCCEE-
T ss_pred             ecC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEE------ecCCCccceEECCCCCEEEEEecCcCCCcE-
Confidence            655 457999999999987 67889999999999998776654      2445788999999999988887   57888 


Q ss_pred             eecccccccccccccCccccccEEEeC-CCCceEEeccCCCCEEEEEEcCC-CeE-EEEECCCcEEEEeCCCCcEEEEEe
Q 006825          529 KKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSWSKS-QHL-LSSSMDKTVRLWHLSSKTCLKIFS  605 (630)
Q Consensus       529 i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL~GHs~~V~sLafSPd-~~L-aSgS~DgtVrIWDl~tg~~l~t~~  605 (630)
                                            .+|++ +++++..+..|. .+.+++|+|+ ++| ++++.|++|++||+.+++++..+.
T Consensus       227 ----------------------~~~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~  283 (391)
T 1l0q_A          227 ----------------------SMIDTGTNKITARIPVGP-DPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITATMA  283 (391)
T ss_dssp             ----------------------EEEETTTTEEEEEEECCS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred             ----------------------EEEECCCCeEEEEEecCC-CccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEEEEE
Confidence                                  78887 677788887765 5899999999 666 677899999999999999999887


Q ss_pred             -cCCc
Q 006825          606 -HSDY  609 (630)
Q Consensus       606 -H~~~  609 (630)
                       |..+
T Consensus       284 ~~~~~  288 (391)
T 1l0q_A          284 VGKNP  288 (391)
T ss_dssp             CSSSE
T ss_pred             CCcCC
Confidence             5443

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.93  E-value=2.8e-24  Score=223.73  Aligned_cols=242  Identities=8%  Similarity=-0.036  Sum_probs=180.8

Q ss_pred             CcccccccEEEEECCCCcEEEEe---------------eecCCCceeEEEEcC---------CCceEeeecceee-ecCc
Q 006825          285 TAGVAEQGCLIKNLDNGKEFVVN---------------EIQEDGTWKKVKEVG---------TGRQLTIEEFEMC-VGHS  339 (630)
Q Consensus       285 ~~~~~~~~~~I~~LddG~~~~v~---------------e~~~dg~~~~l~dv~---------TG~~lt~eef~~l-~GHs  339 (630)
                      +++..++.++||++.+|+.....               ..+.|+. .++|+..         +++.+     ..+ .+|.
T Consensus        52 ~sg~~Dg~v~iwd~~~~~~~~~~~~~~v~~~~~~~~~~s~s~D~~-i~~w~~~~~~~~~~~~~~~~~-----~~~~~~~~  125 (343)
T 3lrv_A           52 MCRCEDGALHFTQLKDSKTITTITTPNPRTGGEHPAIISRGPCNR-LLLLYPGNQITILDSKTNKVL-----REIEVDSA  125 (343)
T ss_dssp             EEEEETTEEEEEEESSSSCEEEEEEECCCTTCCCCSEEEECSTTE-EEEEETTTEEEEEETTTCCEE-----EEEECCCS
T ss_pred             EEECCCCcEEEEECCCCcEEEEEecCCceeeeeCCceEEecCCCe-EEEEEccCceEEeecCCccee-----EEeecCCC
Confidence            67788899999999998754321               2233444 5566544         55544     333 3788


Q ss_pred             cceeEEEeec-----ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceE
Q 006825          340 PIVQELMRRQ-----NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSS  414 (630)
Q Consensus       340 ~~V~~Lafs~-----~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~V  414 (630)
                      ..|..++|+|     .+++|+.|++++ +||+.+++....+...|...|.+++|+|+|++++                  
T Consensus       126 ~~v~~~~~~~~~~~~~l~s~s~dg~i~-~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~la------------------  186 (343)
T 3lrv_A          126 NEIIYMYGHNEVNTEYFIWADNRGTIG-FQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLA------------------  186 (343)
T ss_dssp             SCEEEEECCC---CCEEEEEETTCCEE-EEESSSSCEEEEECCCSSCCCCEEEECTTSCEEE------------------
T ss_pred             CCEEEEEcCCCCCCCEEEEEeCCCcEE-EEECCCCcEEEEEecCCCCceEEEEECCCCCEEE------------------
Confidence            9999999998     799999999999 9999999998877656777899999999998775                  


Q ss_pred             EEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecc-cCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeee
Q 006825          415 SATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQA-HNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGE  493 (630)
Q Consensus       415 sa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~g-Ht~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~  493 (630)
                                 +|+.|+.|++||+.+++.    ....+.+ |.+.|++|+|+|+|.+|++++. ++|+|||+++++....
T Consensus       187 -----------sg~~dg~i~iwd~~~~~~----~~~~~~~~h~~~v~~l~fs~~g~~l~s~~~-~~v~iwd~~~~~~~~~  250 (343)
T 3lrv_A          187 -----------LYSPDGILDVYNLSSPDQ----ASSRFPVDEEAKIKEVKFADNGYWMVVECD-QTVVCFDLRKDVGTLA  250 (343)
T ss_dssp             -----------EECTTSCEEEEESSCTTS----CCEECCCCTTSCEEEEEECTTSSEEEEEES-SBEEEEETTSSTTCBS
T ss_pred             -----------EEcCCCEEEEEECCCCCC----CccEEeccCCCCEEEEEEeCCCCEEEEEeC-CeEEEEEcCCCCccee
Confidence                       456678899999987753    1256777 9999999999999999999995 5999999998876554


Q ss_pred             eecccccCcccce--EEEEECCCCCEEEEeeC-CCeeeeecccccccccccccCccccccEEEeC-CCCceEEeccCCCC
Q 006825          494 LLEKQEDGHLNML--LLANGSPEPTSLSPKHL-DNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDD  569 (630)
Q Consensus       494 l~~~~~~gh~~~V--~svafSpdg~~lasgs~-Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL~GHs~~  569 (630)
                      +.  .+..|...+  .+++|+|++++|++++. |+.+                       ++|++ .+......    ..
T Consensus       251 ~~--~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i-----------------------~v~~~~~~~~~~~~----~~  301 (343)
T 3lrv_A          251 YP--TYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSL-----------------------TIYKFDKKTKNWTK----DE  301 (343)
T ss_dssp             SC--CCBC-----CCEEEEECTTSSEEEEEETTTTEE-----------------------EEEEECTTTCSEEE----EE
T ss_pred             ec--ccccccccccceEEEECCCCCEEEEecCCCCcE-----------------------EEEEEcccccceEe----cC
Confidence            31  112233333  46999999999999988 9999                       56655 22222222    46


Q ss_pred             EEEEEEcC---C-CeEEEEECCCcEEEEeCC
Q 006825          570 VLDLSWSK---S-QHLLSSSMDKTVRLWHLS  596 (630)
Q Consensus       570 V~sLafSP---d-~~LaSgS~DgtVrIWDl~  596 (630)
                      +..++|.+   + ..|++++.|+++++|-..
T Consensus       302 ~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~  332 (343)
T 3lrv_A          302 ESALCLQSDTADFTDMDVVCGDGGIAAILKT  332 (343)
T ss_dssp             EEECCC----CCCCEEEEEEETTEEEEEEEC
T ss_pred             ceeEecCccccccceeEEEecCCceEEEEec
Confidence            77888888   7 899999999999988543

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.93  E-value=4.2e-24  Score=230.99  Aligned_cols=254  Identities=11%  Similarity=0.040  Sum_probs=186.6

Q ss_pred             cceeEEEeec--ceEeecCCCccEecccCCCCc---eeEEecCCccCCEEEEEEc---CCCCeEEeecCCC---------
Q 006825          340 PIVQELMRRQ--NVEEGNKDSFDLNNNGSSGGG---MKSKKKGSWFKSIRTVASS---VTGHKERRSSDER---------  402 (630)
Q Consensus       340 ~~V~~Lafs~--~laSgS~D~tvr~vWD~~tG~---~~~~lk~gH~~~V~sVAfS---pdG~~lasgS~D~---------  402 (630)
                      ..+++++|++  .++.++.++.|+ +||+.+|+   .+..+. .|...+....+.   .++..+.....+.         
T Consensus         5 ~p~~~v~~s~dg~~l~~~~~~~i~-v~d~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (450)
T 2vdu_B            5 HPLQNLLTSRDGSLVFAIIKNCIL-SFKYQSPNHWEFAGKWS-DDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGD   82 (450)
T ss_dssp             CCCCEEEECSSSSEEEEEETTEEE-EEEEETTTEEEEEEEEE-CCC----------------------------------
T ss_pred             ccEEEEEecCCCCEEEEEeCCeEE-EEECCCCCcceeeeecC-CccccccccccccchhhccccccccccccccccCcCc
Confidence            3578888988  344455678999 99999999   777776 454422222221   1111111111110         


Q ss_pred             -----------CCccccCCcceEEEeecCCCe--E-EEecCCcEEEEEeCC--CCcccceeeeeEec--ccCcCEEEEEE
Q 006825          403 -----------DTSSEKGGRRSSSATDDSQDV--S-FHGQERVRVRQYGKS--CKDLTALYKCQEIQ--AHNGSIWSIKF  464 (630)
Q Consensus       403 -----------dt~s~~gh~~~Vsa~~~s~d~--l-~Sgs~Dg~VriWd~~--~~el~~~~~v~tL~--gHt~~V~sVaF  464 (630)
                                 .....++|...|.++++++++  + ++++.|++|++|++.  .++     +++.+.  .|...|.+|+|
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~-----~~~~~~~~~~~~~v~~~~~  157 (450)
T 2vdu_B           83 SIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKN-----VLKLRKRFCFSKRPNAISI  157 (450)
T ss_dssp             -----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSS-----CEEEEEEEECSSCEEEEEE
T ss_pred             cccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCc-----eeeeeecccCCCCceEEEE
Confidence                       011134667789999999887  4 889999999999987  553     345555  67789999999


Q ss_pred             ccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCC---CCEEEEeeCCCeeeeeccccccccccc
Q 006825          465 SLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPE---PTSLSPKHLDNHLEKKRRGRSINRKSL  541 (630)
Q Consensus       465 SpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpd---g~~lasgs~Dg~I~i~~~~~~~~~~s~  541 (630)
                      +|+|++|++|+.|+.|++|++.++...... ...+.+|...|.+++|+|+   +++|++++.|+.|              
T Consensus       158 sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~-~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i--------------  222 (450)
T 2vdu_B          158 AEDDTTVIIADKFGDVYSIDINSIPEEKFT-QEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHI--------------  222 (450)
T ss_dssp             CTTSSEEEEEETTSEEEEEETTSCCCSSCC-CCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCE--------------
T ss_pred             cCCCCEEEEEeCCCcEEEEecCCccccccc-ceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcE--------------
Confidence            999999999999999999999887755310 0124688999999999999   9999999999999              


Q ss_pred             ccCccccccEEEeC-CCCceEE-eccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCCCcEEEEEe-c-----------
Q 006825          542 SLDHMVVPETVFAL-SDKPICS-FQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-H-----------  606 (630)
Q Consensus       542 s~d~~i~~~~Vwdl-sgk~l~t-L~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg~~l~t~~-H-----------  606 (630)
                               ++|++ +++++.. +.+|...|++++|+ + .+|++++.|++|+|||+.+++++.++. +           
T Consensus       223 ---------~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~  292 (450)
T 2vdu_B          223 ---------KISHYPQCFIVDKWLFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQH  292 (450)
T ss_dssp             ---------EEEEESCTTCEEEECCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTS
T ss_pred             ---------EEEECCCCceeeeeecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcc
Confidence                     78887 6777777 56999999999999 9 999999999999999999999999886 2           


Q ss_pred             --------------CCceEEEE-cCCCcEEEEec
Q 006825          607 --------------SDYDISLV-DRLMLRFAYGA  625 (630)
Q Consensus       607 --------------~~~V~sVa-s~~~~~lAsgs  625 (630)
                                    ...|.+|+ .+++..+++++
T Consensus       293 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~  326 (450)
T 2vdu_B          293 LAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFV  326 (450)
T ss_dssp             BC----------CBCCCEEEEEECSSSSEEEEEE
T ss_pred             cccccccccccccceEEEEEEEEeCCCCEEEEEE
Confidence                          24678888 77777777765

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.92  E-value=6.2e-23  Score=218.01  Aligned_cols=244  Identities=10%  Similarity=-0.003  Sum_probs=200.0

Q ss_pred             eEEEEcCCCceEeeecceeeecCccceeEEEeec---ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCC
Q 006825          316 KKVKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTG  392 (630)
Q Consensus       316 ~~l~dv~TG~~lt~eef~~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG  392 (630)
                      .++|++.+|+.+.......+.+|...|..++|.+   .+++++.|++++ +||+.+++.+.++. .|...+.+++|+|+|
T Consensus       146 i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~-~~d~~~~~~~~~~~-~~~~~~~~~~~~~~~  223 (433)
T 3bws_A          146 MDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVH-VFDLKTLAYKATVD-LTGKWSKILLYDPIR  223 (433)
T ss_dssp             EEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEE-EEETTTCCEEEEEE-CSSSSEEEEEEETTT
T ss_pred             EEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEE-EEECCCceEEEEEc-CCCCCeeEEEEcCCC
Confidence            4577777777764444456789999999999987   789999999999 99999999999998 899999999999998


Q ss_pred             CeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEE
Q 006825          393 HKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLA  472 (630)
Q Consensus       393 ~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LA  472 (630)
                      +++.                            +++..++.|++||..+++     .+..+..| ..+.+++|+|+|++|+
T Consensus       224 ~~l~----------------------------~~~~~~~~i~~~d~~~~~-----~~~~~~~~-~~~~~~~~~~~g~~l~  269 (433)
T 3bws_A          224 DLVY----------------------------CSNWISEDISVIDRKTKL-----EIRKTDKI-GLPRGLLLSKDGKELY  269 (433)
T ss_dssp             TEEE----------------------------EEETTTTEEEEEETTTTE-----EEEECCCC-SEEEEEEECTTSSEEE
T ss_pred             CEEE----------------------------EEecCCCcEEEEECCCCc-----EEEEecCC-CCceEEEEcCCCCEEE
Confidence            8663                            445567899999997764     34555554 4599999999999999


Q ss_pred             EEe--------CCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCE-EEEeeCCCeeeeeccccccccccccc
Q 006825          473 SAG--------EDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTS-LSPKHLDNHLEKKRRGRSINRKSLSL  543 (630)
Q Consensus       473 SgS--------~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~-lasgs~Dg~I~i~~~~~~~~~~s~s~  543 (630)
                      +++        .|+.|++||+.+++....+      .|...+..++|+|+++. +++++.++.|                
T Consensus       270 ~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~------~~~~~~~~~~~~~~g~~l~~~~~~~~~v----------------  327 (433)
T 3bws_A          270 IAQFSASNQESGGGRLGIYSMDKEKLIDTI------GPPGNKRHIVSGNTENKIYVSDMCCSKI----------------  327 (433)
T ss_dssp             EEEEESCTTCSCCEEEEEEETTTTEEEEEE------EEEECEEEEEECSSTTEEEEEETTTTEE----------------
T ss_pred             EEECCCCccccCCCeEEEEECCCCcEEeec------cCCCCcceEEECCCCCEEEEEecCCCEE----------------
Confidence            988        5899999999988766552      44567889999999974 5666888988                


Q ss_pred             CccccccEEEeC-CCCceEEeccCCCCEEEEEEcCC-CeEEEEEC---------------CCcEEEEeCCCCcEEEEEec
Q 006825          544 DHMVVPETVFAL-SDKPICSFQGHLDDVLDLSWSKS-QHLLSSSM---------------DKTVRLWHLSSKTCLKIFSH  606 (630)
Q Consensus       544 d~~i~~~~Vwdl-sgk~l~tL~GHs~~V~sLafSPd-~~LaSgS~---------------DgtVrIWDl~tg~~l~t~~H  606 (630)
                             .+|++ +++.+..+. |...+.+++|+|+ ++|++++.               ||.|++||+.+++++..+.+
T Consensus       328 -------~v~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~  399 (433)
T 3bws_A          328 -------EVYDLKEKKVQKSIP-VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEA  399 (433)
T ss_dssp             -------EEEETTTTEEEEEEE-CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEEC
T ss_pred             -------EEEECCCCcEEEEec-CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecC
Confidence                   78888 556666665 7788999999999 78888776               57999999999999999987


Q ss_pred             CCceEEEE-cCCCcEEEEec
Q 006825          607 SDYDISLV-DRLMLRFAYGA  625 (630)
Q Consensus       607 ~~~V~sVa-s~~~~~lAsgs  625 (630)
                      ...+.+++ ++++..+++++
T Consensus       400 ~~~~~~~~~s~dg~~l~~~~  419 (433)
T 3bws_A          400 GNQPTGLDVSPDNRYLVISD  419 (433)
T ss_dssp             SSSEEEEEECTTSCEEEEEE
T ss_pred             CCCCceEEEcCCCCEEEEEE
Confidence            77899999 88888877654

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.92  E-value=1.9e-23  Score=221.81  Aligned_cols=253  Identities=9%  Similarity=-0.040  Sum_probs=170.5

Q ss_pred             eEeecCCCccEecccCCCC---ceeEEecCCccCCEEEEEEcCCCCeEE----------------eecCCCCCcc---cc
Q 006825          351 VEEGNKDSFDLNNNGSSGG---GMKSKKKGSWFKSIRTVASSVTGHKER----------------RSSDERDTSS---EK  408 (630)
Q Consensus       351 laSgS~D~tvr~vWD~~tG---~~~~~lk~gH~~~V~sVAfSpdG~~la----------------sgS~D~dt~s---~~  408 (630)
                      +++++ ..+|+ +|++..+   +.+++++ +|..+|..|+|+||-.-|+                .+.+|+..+.   ..
T Consensus        57 ~~~~~-~~~v~-lw~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~spd~~~~~~~l~s~  133 (356)
T 2w18_A           57 IITAC-EDVVS-LWKALDAWQWEKLYTWH-FAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCSSDDESEKQVLLKS  133 (356)
T ss_dssp             EEEEE-SSEEE-EEEESSSSBEEEEEEEE-CCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC------CCEEEEEE
T ss_pred             EEEec-cceEE-EcccCCCccceeeEEEe-ccCceeEEEEEcCcccceeeeeeccccccceEEEEECCCccccccEEEeC
Confidence            34444 46888 9999999   8899998 8998887777777443222                2222210000   12


Q ss_pred             CCcceEEEeecCCCeEEEec---CCcEEEEEeCCC-CcccceeeeeEecccCcCEEEEEEcc---CCCEEEEEeCCCcEE
Q 006825          409 GGRRSSSATDDSQDVSFHGQ---ERVRVRQYGKSC-KDLTALYKCQEIQAHNGSIWSIKFSL---DGRYLASAGEDCVIH  481 (630)
Q Consensus       409 gh~~~Vsa~~~s~d~l~Sgs---~Dg~VriWd~~~-~el~~~~~v~tL~gHt~~V~sVaFSp---DG~~LASgS~DgtIr  481 (630)
                      +|...|..+  ....++..+   .|.+|++|++.. ++     .+..+.+|...+..++|++   ++.+||||+.|++||
T Consensus       134 g~~~~v~~l--~~g~lv~ss~~g~d~~V~~~~~s~dG~-----~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIk  206 (356)
T 2w18_A          134 GNIKAVLGL--TKRRLVSSSGTLSDQQVEVMTFAEDGG-----GKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIV  206 (356)
T ss_dssp             EEEEEEEEE--TTTEEEEEESSSTTCEEEEEEECTTSC-----EEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEE
T ss_pred             CCeEEEEec--CCCcEEEecccCCCCcEEEEEECCCCc-----eeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEE
Confidence            233334433  111233332   489999999854 32     4567788999999999999   779999999999999


Q ss_pred             EEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeC-CCCce
Q 006825          482 VWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPI  560 (630)
Q Consensus       482 VWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l  560 (630)
                      |||+.+++++.++...  ..+...+.+++|+|+|.++++++.+..+  |      ...+.+.+..+   ++|+. +++.+
T Consensus       207 IWDl~TGk~l~tL~g~--~~~v~~v~~vafSpdG~~lvs~s~~~~~--w------~laSGs~D~tI---klWd~~tgk~l  273 (356)
T 2w18_A          207 IWNLKTGQLLKKMHID--DSYQASVCHKAYSEMGLLFIVLSHPCAK--E------SESLRSPVFQL---IVINPKTTLSV  273 (356)
T ss_dssp             EEETTTCCEEEEEECC--C---CCCEEEEEEETTEEEEEEC--------------------CCEEE---EEEETTTTEEE
T ss_pred             EEECCCCcEEEEEcCC--CcceeeeEEEEECCCCCEEEEeccCCCc--c------eeeccCCCcEE---EEEECCCCEEE
Confidence            9999999999886210  1123467788999999988665433221  1      11233334444   88888 67776


Q ss_pred             EEe-----ccCCCCEEEEEEcCCCeEEEEECCCcEEEEeCCCCcEEEEEe-cCCceE-EEE-cCCCcEEEEecce
Q 006825          561 CSF-----QGHLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYDI-SLV-DRLMLRFAYGAFL  627 (630)
Q Consensus       561 ~tL-----~GHs~~V~sLafSPd~~LaSgS~DgtVrIWDl~tg~~l~t~~-H~~~V~-sVa-s~~~~~lAsgs~~  627 (630)
                      .++     .||...+.+..++ ..++++|+.|++|||||+.++++++++. |.+.|. +++ +|++.++++++.+
T Consensus       274 ~v~~~~~p~Gh~~~~lsg~~s-g~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D  347 (356)
T 2w18_A          274 GVMLYCLPPGQAGRFLEGDVK-DHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKD  347 (356)
T ss_dssp             EEEEECCCTTCCCCEEEEEEE-TTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEEECTT
T ss_pred             EEEEeeccCCCcceeEccccC-CCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEECC
Confidence            665     4888777666655 3789999999999999999999999998 877665 577 9999999999876

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.91  E-value=1e-22  Score=214.31  Aligned_cols=246  Identities=10%  Similarity=-0.018  Sum_probs=166.8

Q ss_pred             EEEcCCCceEeeecceeeecCccceeEEEeec---ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCe
Q 006825          318 VKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHK  394 (630)
Q Consensus       318 l~dv~TG~~lt~eef~~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~  394 (630)
                      ++...+.+++     +++.+|...|.+|+|+|   .|++|+.| .++ +|++.+++......   ...+..+++.+++++
T Consensus         3 i~s~~~~~~~-----~~~~~h~~~V~~v~fs~dg~~la~g~~~-~~~-iw~~~~~~~~~~~~---~~~~~~~~~~~~~~~   72 (355)
T 3vu4_A            3 LGSMITRNPI-----VPENHVSNPVTDYEFNQDQSCLILSTLK-SFE-IYNVHPVAHIMSQE---MRHLSKVRMLHRTNY   72 (355)
T ss_dssp             ---------------------CCCCCEEEECTTSSEEEEECSS-EEE-EEEETTEEEEEEEE---CSCCCEEEECTTSSE
T ss_pred             cccccccCCc-----cccccCCCceEEEEECCCCCEEEEEcCC-EEE-EEecCCcceeeeee---cCCeEEEEEcCCCCE
Confidence            4445555555     67789999999999999   68888766 578 99999887766544   224777888877655


Q ss_pred             EEeecCCCCCccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEE
Q 006825          395 ERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASA  474 (630)
Q Consensus       395 lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASg  474 (630)
                      ++                            ++++.|++|++||..+++     ++.++. |...|.+++|+++.  ++.+
T Consensus        73 ~~----------------------------~~~~~d~~v~iWd~~~~~-----~~~~~~-~~~~v~~v~~~~~~--~~~~  116 (355)
T 3vu4_A           73 VA----------------------------FVTGVKEVVHIWDDVKKQ-----DVSRIK-VDAPVKDLFLSREF--IVVS  116 (355)
T ss_dssp             EE----------------------------EECSSTTEEEEEETTTTE-----EEEEEE-CSSCEEEEEECSSE--EEEE
T ss_pred             EE----------------------------EEECCccEEEEEECCCCc-----EEEEEE-CCCceEEEEEcCCE--EEEE
Confidence            43                            566777899999998775     355565 67799999998875  4443


Q ss_pred             eCCCcEEEEECcCC-ceeeeeecccccCcccceEEEEECCCCCEEEE--eeCCCeeeeecccccccccccccCccccccE
Q 006825          475 GEDCVIHVWQVVES-ERKGELLEKQEDGHLNMLLLANGSPEPTSLSP--KHLDNHLEKKRRGRSINRKSLSLDHMVVPET  551 (630)
Q Consensus       475 S~DgtIrVWDl~tg-~~~~~l~~~~~~gh~~~V~svafSpdg~~las--gs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~  551 (630)
                       .|+.|+|||+.++ +.+..+.     .   ....+++++  .+++.  ++.++.|++|+............       .
T Consensus       117 -~~~~i~i~d~~~~~~~~~~~~-----~---~~~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~-------~  178 (355)
T 3vu4_A          117 -YGDVISVFKFGNPWKRITDDI-----R---FGGVCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQ-------G  178 (355)
T ss_dssp             -ETTEEEEEESSTTCCBSSCCE-----E---EEEEEEEET--TEEEEEESSCTTCEEEEECCC-----------------
T ss_pred             -EcCEEEEEECCCCceeeEEec-----c---CCceEEEEc--cEEEEeCCCcCcEEEEEECCCCCccccccc-------c
Confidence             3789999999987 5555531     1   334556666  55555  68899994444322100000000       0


Q ss_pred             EEeCCCCc-eEEeccCCCCEEEEEEcCC-CeEEEEECCCc-EEEEeCCCCcEEEEEe---cCCceEEEE-cCCCcEEEEe
Q 006825          552 VFALSDKP-ICSFQGHLDDVLDLSWSKS-QHLLSSSMDKT-VRLWHLSSKTCLKIFS---HSDYDISLV-DRLMLRFAYG  624 (630)
Q Consensus       552 Vwdlsgk~-l~tL~GHs~~V~sLafSPd-~~LaSgS~Dgt-VrIWDl~tg~~l~t~~---H~~~V~sVa-s~~~~~lAsg  624 (630)
                      .-...-++ +..+.+|...|++++|+|+ .+|+||+.|++ |+|||+.+++++.++.   |...|++++ +|++..++++
T Consensus       179 ~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~  258 (355)
T 3vu4_A          179 VQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVV  258 (355)
T ss_dssp             --------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEE
T ss_pred             ccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEE
Confidence            00000012 7889999999999999999 99999999999 9999999999999997   999999999 9999999998


Q ss_pred             cce
Q 006825          625 AFL  627 (630)
Q Consensus       625 s~~  627 (630)
                      +.+
T Consensus       259 s~d  261 (355)
T 3vu4_A          259 SDK  261 (355)
T ss_dssp             ETT
T ss_pred             ECC
Confidence            754

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.90  E-value=2.1e-23  Score=241.90  Aligned_cols=224  Identities=18%  Similarity=0.155  Sum_probs=185.5

Q ss_pred             EecCCccCCEEEEEEcCCCCeEEeecCCC-----CC--------ccccCCcceEEEeecCCC--e--EEEecCCcEEEEE
Q 006825          374 KKKGSWFKSIRTVASSVTGHKERRSSDER-----DT--------SSEKGGRRSSSATDDSQD--V--SFHGQERVRVRQY  436 (630)
Q Consensus       374 ~lk~gH~~~V~sVAfSpdG~~lasgS~D~-----dt--------~s~~gh~~~Vsa~~~s~d--~--l~Sgs~Dg~VriW  436 (630)
                      .+. ||.+.|++++|+|+|+++++|+.|+     +.        ..+.+|...|.++.++++  +  +++|+.|++|++|
T Consensus         4 ~l~-gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vw   82 (753)
T 3jro_A            4 IAN-AHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIW   82 (753)
T ss_dssp             -----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEE
T ss_pred             ecc-cCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEE
Confidence            455 9999999999999999999999887     21        127789999999999865  4  9999999999999


Q ss_pred             eCCCCcccceeeeeEecccCcCEEEEEEccC--CCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECC-
Q 006825          437 GKSCKDLTALYKCQEIQAHNGSIWSIKFSLD--GRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSP-  513 (630)
Q Consensus       437 d~~~~el~~~~~v~tL~gHt~~V~sVaFSpD--G~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSp-  513 (630)
                      ++.+++.   ..+..+.+|...|++++|+|+  +++|++|+.|++|++||+.++.......   ..+|...|.+++|+| 
T Consensus        83 d~~~~~~---~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~---~~~~~~~v~~l~~~p~  156 (753)
T 3jro_A           83 KEENGRW---SQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPII---IDAHAIGVNSASWAPA  156 (753)
T ss_dssp             EEETTEE---EEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEE---EECCSSCEEEEEECCC
T ss_pred             ECCCCcc---cccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeE---eecCCCceEEEEecCc
Confidence            9876542   256778999999999999999  9999999999999999998874433321   468899999999999 


Q ss_pred             ------------CCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeC-CC----CceEEeccCCCCEEEEEEc
Q 006825          514 ------------EPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SD----KPICSFQGHLDDVLDLSWS  576 (630)
Q Consensus       514 ------------dg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sg----k~l~tL~GHs~~V~sLafS  576 (630)
                                  ++.++++++.|+.|                       ++|++ ++    .++.++.+|...|++++|+
T Consensus       157 ~~~~~~~~~~~~d~~~l~sgs~dg~I-----------------------~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~s  213 (753)
T 3jro_A          157 TIEEDGEHNGTKESRKFVTGGADNLV-----------------------KIWKYNSDAQTYVLESTLEGHSDWVRDVAWS  213 (753)
T ss_dssp             C---------CGGGCCEEEEETTSCE-----------------------EEEEEETTTTEEEEEEEECCCSSCEEEEEEC
T ss_pred             ccccccccccCCCCCEEEEEECCCeE-----------------------EEEeccCCcccceeeeeecCCCCcEEEEEec
Confidence                        58999999999999                       66666 33    4567889999999999999


Q ss_pred             CC----CeEEEEECCCcEEEEeCCCCc-----EEEEEe-cCCceEEEE-cCCCcEEEEecce
Q 006825          577 KS----QHLLSSSMDKTVRLWHLSSKT-----CLKIFS-HSDYDISLV-DRLMLRFAYGAFL  627 (630)
Q Consensus       577 Pd----~~LaSgS~DgtVrIWDl~tg~-----~l~t~~-H~~~V~sVa-s~~~~~lAsgs~~  627 (630)
                      |+    .+|++|+.||+|+|||+.+++     .+.... |...|++++ +|++..+++++.+
T Consensus       214 p~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~D  275 (753)
T 3jro_A          214 PTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGD  275 (753)
T ss_dssp             CCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSS
T ss_pred             cCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCC
Confidence            97    578999999999999999864     222222 889999999 8888888888654

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.90  E-value=7.8e-22  Score=212.91  Aligned_cols=260  Identities=9%  Similarity=-0.073  Sum_probs=202.0

Q ss_pred             eeEEEEc--CCCceEeeecceeeecCccceeEEEeec-----------------ceEeecCC------CccEecccCCCC
Q 006825          315 WKKVKEV--GTGRQLTIEEFEMCVGHSPIVQELMRRQ-----------------NVEEGNKD------SFDLNNNGSSGG  369 (630)
Q Consensus       315 ~~~l~dv--~TG~~lt~eef~~l~GHs~~V~~Lafs~-----------------~laSgS~D------~tvr~vWD~~tG  369 (630)
                      ..+|||+  .+|+++.-   .++.+|...|..+++++                 .++.++.+      ++++ +||+. |
T Consensus        94 ~i~lwd~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~-i~d~~-g  168 (415)
T 2hqs_A           94 AYQLVDTGGAPGTVLAQ---NSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELR-VSDYD-G  168 (415)
T ss_dssp             EEEEEECSSSTTCEEEE---EEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEE-EEETT-S
T ss_pred             EEEEEeCCCCCCCEEee---eEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEE-EEcCC-C
Confidence            4689999  89987611   34778888888777653                 45555554      7899 99997 5


Q ss_pred             ceeEEecCCccCCEEEEEEcCCCCeEEeecCCC----------CCc---cccCCcceEEEeecCCCe--EE-EecCCc--
Q 006825          370 GMKSKKKGSWFKSIRTVASSVTGHKERRSSDER----------DTS---SEKGGRRSSSATDDSQDV--SF-HGQERV--  431 (630)
Q Consensus       370 ~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~----------dt~---s~~gh~~~Vsa~~~s~d~--l~-Sgs~Dg--  431 (630)
                      ...+.+. +|...|.+++|+|||++++.++.+.          .++   .+.+|...+.++.|++++  ++ +++.++  
T Consensus       169 ~~~~~l~-~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~l~~~~~~~~~~~~spdg~~la~~~~~~g~~  247 (415)
T 2hqs_A          169 YNQFVVH-RSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSL  247 (415)
T ss_dssp             CSCEEEE-EESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSSCEEEEEECTTSSEEEEEECTTSSC
T ss_pred             CCCEEEe-CCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEEeecCCCcccCEEEcCCCCEEEEEEecCCCc
Confidence            5677777 8999999999999999999988763          111   255677789999999998  44 666554  


Q ss_pred             EEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeC-CC--cEEEEECcCCceeeeeecccccCcccceEE
Q 006825          432 RVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGE-DC--VIHVWQVVESERKGELLEKQEDGHLNMLLL  508 (630)
Q Consensus       432 ~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~-Dg--tIrVWDl~tg~~~~~l~~~~~~gh~~~V~s  508 (630)
                      .|++||..+++      ...+..|...+.+++|+|||++|+.++. ++  .|.+||+.+++.. .+     ..+...+..
T Consensus       248 ~i~~~d~~~~~------~~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~-~l-----~~~~~~~~~  315 (415)
T 2hqs_A          248 NLYVMDLASGQ------IRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQ-RI-----TWEGSQNQD  315 (415)
T ss_dssp             EEEEEETTTCC------EEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCE-EC-----CCSSSEEEE
T ss_pred             eEEEEECCCCC------EEeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCEE-EE-----ecCCCcccC
Confidence            59999998764      3567889999999999999999998886 45  6777898877643 22     445567889


Q ss_pred             EEECCCCCEEEEeeCC---CeeeeecccccccccccccCccccccEEEeCCCCceEEeccCCCCEEEEEEcCC-CeEEEE
Q 006825          509 ANGSPEPTSLSPKHLD---NHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSS  584 (630)
Q Consensus       509 vafSpdg~~lasgs~D---g~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL~GHs~~V~sLafSPd-~~LaSg  584 (630)
                      ++|+|+|++|+.++.+   ..|                       .+|++.+..+..+..|. .+.+++|+|+ ++|+++
T Consensus       316 ~~~spdG~~l~~~~~~~g~~~i-----------------------~~~d~~~~~~~~l~~~~-~~~~~~~spdg~~l~~~  371 (415)
T 2hqs_A          316 ADVSSDGKFMVMVSSNGGQQHI-----------------------AKQDLATGGVQVLSSTF-LDETPSLAPNGTMVIYS  371 (415)
T ss_dssp             EEECTTSSEEEEEEECSSCEEE-----------------------EEEETTTCCEEECCCSS-SCEEEEECTTSSEEEEE
T ss_pred             eEECCCCCEEEEEECcCCceEE-----------------------EEEECCCCCEEEecCCC-CcCCeEEcCCCCEEEEE
Confidence            9999999999988764   345                       78888555556777775 8999999999 889988


Q ss_pred             ECCC---cEEEEeCCCCcEEEEEe-cCCceEEEE-cCC
Q 006825          585 SMDK---TVRLWHLSSKTCLKIFS-HSDYDISLV-DRL  617 (630)
Q Consensus       585 S~Dg---tVrIWDl~tg~~l~t~~-H~~~V~sVa-s~~  617 (630)
                      +.|+   .|++||+. +.++..+. |.+.|.+++ +|.
T Consensus       372 s~~~~~~~l~~~d~~-g~~~~~l~~~~~~v~~~~~~~~  408 (415)
T 2hqs_A          372 SSQGMGSVLNLVSTD-GRFKARLPATDGQVKFPAWSPY  408 (415)
T ss_dssp             EEETTEEEEEEEETT-SCCEEECCCSSSEEEEEEECCC
T ss_pred             EcCCCccEEEEEECC-CCcEEEeeCCCCCCcCCccccc
Confidence            8887   89999997 55566776 999999999 664

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.90  E-value=2.7e-21  Score=205.33  Aligned_cols=226  Identities=9%  Similarity=-0.079  Sum_probs=181.1

Q ss_pred             eeeecCccceeEEEeec---ceEeecCCCccEecccCCCCceeEE-----ecCCccCCEEEEEEcCCCCeEEeecCCCCC
Q 006825          333 EMCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSK-----KKGSWFKSIRTVASSVTGHKERRSSDERDT  404 (630)
Q Consensus       333 ~~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~-----lk~gH~~~V~sVAfSpdG~~lasgS~D~dt  404 (630)
                      ..+..+. .+.+++|+|   .+++++.|++++ +||+.+|+.+..     +. +|...|.+++|+++|+++         
T Consensus       117 ~~~~~~~-~~~~~~~s~~~~~~~~~~~~~~i~-~~d~~~g~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~---------  184 (433)
T 3bws_A          117 SRFKTGF-QPKSVRFIDNTRLAIPLLEDEGMD-VLDINSGQTVRLSPPEKYK-KKLGFVETISIPEHNELW---------  184 (433)
T ss_dssp             EEEECSS-CBCCCEESSSSEEEEEBTTSSSEE-EEETTTCCEEEECCCHHHH-TTCCEEEEEEEGGGTEEE---------
T ss_pred             EEEcCCC-CceEEEEeCCCeEEEEeCCCCeEE-EEECCCCeEeeecCccccc-ccCCceeEEEEcCCCEEE---------
Confidence            3344443 345888887   678888899999 999999998873     44 899999999999988766         


Q ss_pred             ccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEE-EEeCCCcEEEE
Q 006825          405 SSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLA-SAGEDCVIHVW  483 (630)
Q Consensus       405 ~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LA-SgS~DgtIrVW  483 (630)
                                          ++++.|+.|++||..+++     .+..+..|...+.+++|+|++++|+ +++.|++|++|
T Consensus       185 --------------------~s~~~d~~v~~~d~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~  239 (433)
T 3bws_A          185 --------------------VSQMQANAVHVFDLKTLA-----YKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVI  239 (433)
T ss_dssp             --------------------EEEGGGTEEEEEETTTCC-----EEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             --------------------EEECCCCEEEEEECCCce-----EEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEE
Confidence                                455667899999997764     4567789999999999999999885 55589999999


Q ss_pred             ECcCCceeeeeecccccCcccceEEEEECCCCCEEEEee--------CCCeeeeecccccccccccccCccccccEEEeC
Q 006825          484 QVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKH--------LDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL  555 (630)
Q Consensus       484 Dl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs--------~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl  555 (630)
                      |+.+++.+..+     .. ...+..++|+|+++++++++        .|+.|                       .+|++
T Consensus       240 d~~~~~~~~~~-----~~-~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i-----------------------~~~d~  290 (433)
T 3bws_A          240 DRKTKLEIRKT-----DK-IGLPRGLLLSKDGKELYIAQFSASNQESGGGRL-----------------------GIYSM  290 (433)
T ss_dssp             ETTTTEEEEEC-----CC-CSEEEEEEECTTSSEEEEEEEESCTTCSCCEEE-----------------------EEEET
T ss_pred             ECCCCcEEEEe-----cC-CCCceEEEEcCCCCEEEEEECCCCccccCCCeE-----------------------EEEEC
Confidence            99988876663     22 34589999999999998887        36666                       78887


Q ss_pred             -CCCceEEeccCCCCEEEEEEcCC-C-eEEEEECCCcEEEEeCCCCcEEEEEecCCceEEEE-cCCCcEEEEec
Q 006825          556 -SDKPICSFQGHLDDVLDLSWSKS-Q-HLLSSSMDKTVRLWHLSSKTCLKIFSHSDYDISLV-DRLMLRFAYGA  625 (630)
Q Consensus       556 -sgk~l~tL~GHs~~V~sLafSPd-~-~LaSgS~DgtVrIWDl~tg~~l~t~~H~~~V~sVa-s~~~~~lAsgs  625 (630)
                       +++.+.. ..|...+.+++|+|+ + ++++++.|++|++||+.+++++..+.+...+.+++ ++++..++++.
T Consensus       291 ~~~~~~~~-~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~  363 (433)
T 3bws_A          291 DKEKLIDT-IGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIPVFDKPNTIALSPDGKYLYVSC  363 (433)
T ss_dssp             TTTEEEEE-EEEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEE
T ss_pred             CCCcEEee-ccCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEecCCCCCCeEEEcCCCCEEEEEe
Confidence             4554444 457778999999999 5 45777999999999999999999999888999999 88887666654

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.89  E-value=7e-21  Score=199.39  Aligned_cols=234  Identities=10%  Similarity=0.016  Sum_probs=184.9

Q ss_pred             eEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeE-EeecCCC-----C--Ccc----ccCCcceEEEee
Q 006825          351 VEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKE-RRSSDER-----D--TSS----EKGGRRSSSATD  418 (630)
Q Consensus       351 laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~l-asgS~D~-----d--t~s----~~gh~~~Vsa~~  418 (630)
                      +++++.|++++ +||+.+++.+..+. +|. .+.+++|+|+|+++ ++++.+.     +  +..    ...+ ..+.+++
T Consensus         5 ~vs~~~d~~v~-v~d~~~~~~~~~~~-~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~-~~v~~~~   80 (391)
T 1l0q_A            5 YIANSESDNIS-VIDVTSNKVTATIP-VGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAG-SSPQGVA   80 (391)
T ss_dssp             EEEETTTTEEE-EEETTTTEEEEEEE-CSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECS-SSEEEEE
T ss_pred             EEEcCCCCEEE-EEECCCCeEEEEee-cCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECC-CCccceE
Confidence            78999999999 99999999999888 665 58999999999976 6666665     1  221    2223 3788899


Q ss_pred             cCCCe--E-EEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEE-EEEeCCCcEEEEECcCCceeeee
Q 006825          419 DSQDV--S-FHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYL-ASAGEDCVIHVWQVVESERKGEL  494 (630)
Q Consensus       419 ~s~d~--l-~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~L-ASgS~DgtIrVWDl~tg~~~~~l  494 (630)
                      +++++  + +++..+++|++||..+++.     +..+..| ..+.+++|+|+|++| ++++.|+.|++||+.+++.+..+
T Consensus        81 ~spdg~~l~~~~~~~~~v~v~d~~~~~~-----~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~  154 (391)
T 1l0q_A           81 VSPDGKQVYVTNMASSTLSVIDTTSNTV-----AGTVKTG-KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTV  154 (391)
T ss_dssp             ECTTSSEEEEEETTTTEEEEEETTTTEE-----EEEEECS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             ECCCCCEEEEEECCCCEEEEEECCCCeE-----EEEEeCC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEE
Confidence            99887  4 5677889999999987753     4445544 578999999999977 78889999999999998877664


Q ss_pred             ecccccCcccceEEEEECCCCCEE-EEeeCCCeeeeecccccccccccccCccccccEEEeC-CCCceEEeccCCCCEEE
Q 006825          495 LEKQEDGHLNMLLLANGSPEPTSL-SPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLD  572 (630)
Q Consensus       495 ~~~~~~gh~~~V~svafSpdg~~l-asgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL~GHs~~V~s  572 (630)
                           ..+ ..+..++|+|+++++ +++..++.|                       .+|++ +++.+..+. |...+.+
T Consensus       155 -----~~~-~~~~~~~~~~dg~~l~~~~~~~~~v-----------------------~~~d~~~~~~~~~~~-~~~~~~~  204 (391)
T 1l0q_A          155 -----SVG-RSPKGIAVTPDGTKVYVANFDSMSI-----------------------SVIDTVTNSVIDTVK-VEAAPSG  204 (391)
T ss_dssp             -----ECC-SSEEEEEECTTSSEEEEEETTTTEE-----------------------EEEETTTTEEEEEEE-CSSEEEE
T ss_pred             -----ecC-CCcceEEECCCCCEEEEEeCCCCEE-----------------------EEEECCCCeEEEEEe-cCCCccc
Confidence                 223 456899999999877 567788888                       78887 455555554 5668999


Q ss_pred             EEEcCC-CeEEEEE---CCCcEEEEeCCCCcEEEEEecCCceEEEE-cCCCcEE-EEe
Q 006825          573 LSWSKS-QHLLSSS---MDKTVRLWHLSSKTCLKIFSHSDYDISLV-DRLMLRF-AYG  624 (630)
Q Consensus       573 LafSPd-~~LaSgS---~DgtVrIWDl~tg~~l~t~~H~~~V~sVa-s~~~~~l-Asg  624 (630)
                      ++|+|+ ++|++++   .|+.|++||+.+++++..+.....+.+++ ++++..+ +++
T Consensus       205 ~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~s~  262 (391)
T 1l0q_A          205 IAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGPDPAGIAVTPDGKKVYVAL  262 (391)
T ss_dssp             EEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEE
T ss_pred             eEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecCCCccEEEEccCCCEEEEEc
Confidence            999999 7888877   79999999999999999998555688888 8888766 443

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.86  E-value=3.3e-20  Score=183.39  Aligned_cols=244  Identities=10%  Similarity=-0.017  Sum_probs=183.7

Q ss_pred             eEEEEcCCCceEeeecceeeecCccceeEEEeec---ceEeecCCCccEecccCCC-CceeEEecCCccCCEEEEEEcCC
Q 006825          316 KKVKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSG-GGMKSKKKGSWFKSIRTVASSVT  391 (630)
Q Consensus       316 ~~l~dv~TG~~lt~eef~~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~t-G~~~~~lk~gH~~~V~sVAfSpd  391 (630)
                      .++|++.+|+..      .+.+|...|..++|+|   .|++++ ++.++ +||+.+ ++........+...|.+++|+|+
T Consensus        24 i~~~d~~~~~~~------~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~-~~d~~~~~~~~~~~~~~~~~~~~~~~~spd   95 (297)
T 2ojh_A           24 IEIFNIRTRKMR------VVWQTPELFEAPNWSPDGKYLLLNS-EGLLY-RLSLAGDPSPEKVDTGFATICNNDHGISPD   95 (297)
T ss_dssp             EEEEETTTTEEE------EEEEESSCCEEEEECTTSSEEEEEE-TTEEE-EEESSSCCSCEECCCTTCCCBCSCCEECTT
T ss_pred             EEEEeCCCCcee------eeccCCcceEeeEECCCCCEEEEEc-CCeEE-EEeCCCCCCceEeccccccccccceEECCC
Confidence            567777777655      4556888999999999   577766 78999 999999 88777666333578899999999


Q ss_pred             CCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEE
Q 006825          392 GHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYL  471 (630)
Q Consensus       392 G~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~L  471 (630)
                      |++++.++.+.                         .....|+.|+..++.      ...+..+. .+..++|+|||++|
T Consensus        96 g~~l~~~~~~~-------------------------~~~~~l~~~~~~~~~------~~~~~~~~-~~~~~~~spdg~~l  143 (297)
T 2ojh_A           96 GALYAISDKVE-------------------------FGKSAIYLLPSTGGT------PRLMTKNL-PSYWHGWSPDGKSF  143 (297)
T ss_dssp             SSEEEEEECTT-------------------------TSSCEEEEEETTCCC------CEECCSSS-SEEEEEECTTSSEE
T ss_pred             CCEEEEEEeCC-------------------------CCcceEEEEECCCCc------eEEeecCC-CccceEECCCCCEE
Confidence            99887654321                         023456777765553      23344444 49999999999988


Q ss_pred             E-EEeCCCcEEEEECcCC-ceeeeeecccccCcccceEEEEECCCCCEEEEee-CCCeeeeecccccccccccccCcccc
Q 006825          472 A-SAGEDCVIHVWQVVES-ERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKH-LDNHLEKKRRGRSINRKSLSLDHMVV  548 (630)
Q Consensus       472 A-SgS~DgtIrVWDl~tg-~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs-~Dg~I~i~~~~~~~~~~s~s~d~~i~  548 (630)
                      + +++.|+.++||++... .....     ...+...+..++|+|++++++.++ .++.+                     
T Consensus       144 ~~~~~~~~~~~l~~~~~~~~~~~~-----~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~---------------------  197 (297)
T 2ojh_A          144 TYCGIRDQVFDIYSMDIDSGVETR-----LTHGEGRNDGPDYSPDGRWIYFNSSRTGQM---------------------  197 (297)
T ss_dssp             EEEEEETTEEEEEEEETTTCCEEE-----CCCSSSCEEEEEECTTSSEEEEEECTTSSC---------------------
T ss_pred             EEEECCCCceEEEEEECCCCcceE-----cccCCCccccceECCCCCEEEEEecCCCCc---------------------
Confidence            7 7889999999996432 22233     256677899999999999887765 47766                     


Q ss_pred             ccEEEeC--CCCceEEeccCCCCEEEEEEcCC-CeEEEEECC-----------CcEEEEeCCCCcE--EEEEe-cCCceE
Q 006825          549 PETVFAL--SDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMD-----------KTVRLWHLSSKTC--LKIFS-HSDYDI  611 (630)
Q Consensus       549 ~~~Vwdl--sgk~l~tL~GHs~~V~sLafSPd-~~LaSgS~D-----------gtVrIWDl~tg~~--l~t~~-H~~~V~  611 (630)
                        .+|.+  .+..+..+..|...+..++|+|+ ++|+.++.+           +.|++||+.+++.  +..+. |...|.
T Consensus       198 --~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~  275 (297)
T 2ojh_A          198 --QIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMN  275 (297)
T ss_dssp             --EEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSC
T ss_pred             --cEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccc
Confidence              56655  56778888889889999999999 888888876           5699999998865  44443 888899


Q ss_pred             EEE-cCCCcEEEEecce
Q 006825          612 SLV-DRLMLRFAYGAFL  627 (630)
Q Consensus       612 sVa-s~~~~~lAsgs~~  627 (630)
                      +++ +|++..+++++..
T Consensus       276 ~~~~spdg~~l~~~~~~  292 (297)
T 2ojh_A          276 SPNWSPDGDEFAYVRYF  292 (297)
T ss_dssp             SCCBCTTSSEEEEEEEC
T ss_pred             cceECCCCCEEEEEEec
Confidence            998 8899888877654

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.85  E-value=5.3e-19  Score=190.72  Aligned_cols=219  Identities=12%  Similarity=0.032  Sum_probs=175.5

Q ss_pred             eeEEEEcCCCceEeeecceeeecCccceeEEEeec---ceEeecCCC---ccEecccCCCCceeEEecCCccCCEEEEEE
Q 006825          315 WKKVKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQ---NVEEGNKDS---FDLNNNGSSGGGMKSKKKGSWFKSIRTVAS  388 (630)
Q Consensus       315 ~~~l~dv~TG~~lt~eef~~l~GHs~~V~~Lafs~---~laSgS~D~---tvr~vWD~~tG~~~~~lk~gH~~~V~sVAf  388 (630)
                      ..++||+.++ .+     ..+.+|...|..++|+|   .|++++.|+   +++ +||+.+|+.. .+. +|...+.+++|
T Consensus       160 ~i~i~d~~g~-~~-----~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~-~~d~~tg~~~-~l~-~~~~~~~~~~~  230 (415)
T 2hqs_A          160 ELRVSDYDGY-NQ-----FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALV-IQTLANGAVR-QVA-SFPRHNGAPAF  230 (415)
T ss_dssp             EEEEEETTSC-SC-----EEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEE-EEETTTCCEE-EEE-CCSSCEEEEEE
T ss_pred             eEEEEcCCCC-CC-----EEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEE-EEECCCCcEE-Eee-cCCCcccCEEE
Confidence            4567777643 33     67888999999999999   699998885   899 9999999875 455 78889999999


Q ss_pred             cCCCCeEE-eecCCC---------CC---ccccCCcceEEEeecCCCe--EEEecC-Cc--EEEEEeCCCCcccceeeee
Q 006825          389 SVTGHKER-RSSDER---------DT---SSEKGGRRSSSATDDSQDV--SFHGQE-RV--RVRQYGKSCKDLTALYKCQ  450 (630)
Q Consensus       389 SpdG~~la-sgS~D~---------dt---~s~~gh~~~Vsa~~~s~d~--l~Sgs~-Dg--~VriWd~~~~el~~~~~v~  450 (630)
                      +|||++|+ +++.++         .+   ..+.+|...+..+.|++++  ++.++. ++  .|++|+..+++      ..
T Consensus       231 spdg~~la~~~~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~------~~  304 (415)
T 2hqs_A          231 SPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGA------PQ  304 (415)
T ss_dssp             CTTSSEEEEEECTTSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSC------CE
T ss_pred             cCCCCEEEEEEecCCCceEEEEECCCCCEEeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCC------EE
Confidence            99999888 665544         11   2266778889999999998  555554 44  78888987764      24


Q ss_pred             EecccCcCEEEEEEccCCCEEEEEeCC---CcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCC--
Q 006825          451 EIQAHNGSIWSIKFSLDGRYLASAGED---CVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDN--  525 (630)
Q Consensus       451 tL~gHt~~V~sVaFSpDG~~LASgS~D---gtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg--  525 (630)
                      .+..|...+.+++|+|||++|++++.+   ..|++||+.+++.. .+     ..+. .+..++|+|+|++|++++.++  
T Consensus       305 ~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~-~l-----~~~~-~~~~~~~spdg~~l~~~s~~~~~  377 (415)
T 2hqs_A          305 RITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VL-----SSTF-LDETPSLAPNGTMVIYSSSQGMG  377 (415)
T ss_dssp             ECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE-EC-----CCSS-SCEEEEECTTSSEEEEEEEETTE
T ss_pred             EEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEE-Ee-----cCCC-CcCCeEEcCCCCEEEEEEcCCCc
Confidence            466688889999999999999998865   58999999987763 32     3343 788999999999999887766  


Q ss_pred             -eeeeecccccccccccccCccccccEEEeCCCCceEEeccCCCCEEEEEEcCC
Q 006825          526 -HLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS  578 (630)
Q Consensus       526 -~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL~GHs~~V~sLafSPd  578 (630)
                       .|                       .+|++.++.+..+.+|.+.|.+++|+|.
T Consensus       378 ~~l-----------------------~~~d~~g~~~~~l~~~~~~v~~~~~~~~  408 (415)
T 2hqs_A          378 SVL-----------------------NLVSTDGRFKARLPATDGQVKFPAWSPY  408 (415)
T ss_dssp             EEE-----------------------EEEETTSCCEEECCCSSSEEEEEEECCC
T ss_pred             cEE-----------------------EEEECCCCcEEEeeCCCCCCcCCccccc
Confidence             45                       7888889999999999999999999996

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.83  E-value=9.2e-19  Score=196.37  Aligned_cols=271  Identities=12%  Similarity=0.021  Sum_probs=204.3

Q ss_pred             eeEEEEcCCCceEeeecceeee-cCccceeEEEeec---ceEeecCCCccEecccC--CCCceeEEecCCccCCEEEEEE
Q 006825          315 WKKVKEVGTGRQLTIEEFEMCV-GHSPIVQELMRRQ---NVEEGNKDSFDLNNNGS--SGGGMKSKKKGSWFKSIRTVAS  388 (630)
Q Consensus       315 ~~~l~dv~TG~~lt~eef~~l~-GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~--~tG~~~~~lk~gH~~~V~sVAf  388 (630)
                      ...+||..||+.+     .++. ||.  +..++|+|   +|++++.|++|+ +||+  .+++.+.++.  +...++.|+|
T Consensus       160 ~V~v~D~~t~~~~-----~~i~~g~~--~~~v~~spdg~~l~v~~~d~~V~-v~D~~~~t~~~~~~i~--~g~~p~~va~  229 (543)
T 1nir_A          160 QIALVDGDSKKIV-----KVIDTGYA--VHISRMSASGRYLLVIGRDARID-MIDLWAKEPTKVAEIK--IGIEARSVES  229 (543)
T ss_dssp             EEEEEETTTCCEE-----EEEECSTT--EEEEEECTTSCEEEEEETTSEEE-EEETTSSSCEEEEEEE--CCSEEEEEEE
T ss_pred             eEEEEECCCceEE-----EEEecCcc--cceEEECCCCCEEEEECCCCeEE-EEECcCCCCcEEEEEe--cCCCcceEEe
Confidence            3578899999888     6666 555  88999999   799999999999 9999  8999988887  3456899999


Q ss_pred             cC----CCCeEEeecC-CC-------CCcc----ccC----------C-cceEEEeecCCCe---EEEecCCcEEEEEeC
Q 006825          389 SV----TGHKERRSSD-ER-------DTSS----EKG----------G-RRSSSATDDSQDV---SFHGQERVRVRQYGK  438 (630)
Q Consensus       389 Sp----dG~~lasgS~-D~-------dt~s----~~g----------h-~~~Vsa~~~s~d~---l~Sgs~Dg~VriWd~  438 (630)
                      +|    ||+++++++. +.       .+..    ...          | ...+..+.+++++   +++...+++|++||.
T Consensus       230 sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~  309 (543)
T 1nir_A          230 SKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNY  309 (543)
T ss_dssp             CCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEEC
T ss_pred             CCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEe
Confidence            99    9999988874 22       1111    111          1 2256667777654   788889999999999


Q ss_pred             CCCcccceeeeeEecccCcCEEEEEEccCCCEEEEE-eCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCC-CC
Q 006825          439 SCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASA-GEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPE-PT  516 (630)
Q Consensus       439 ~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASg-S~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpd-g~  516 (630)
                      ...+..   .+.++ .|...+..++|+|+|++|+++ ..+++|+|||+.+++.+..+... ...|......+ ++|+ +.
T Consensus       310 ~~~~~l---~~~~i-~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g-~~ph~g~g~~~-~~p~~g~  383 (543)
T 1nir_A          310 KDIDNL---TVTSI-GAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVG-KTPHPGRGANF-VHPKYGP  383 (543)
T ss_dssp             TTSSSC---EEEEE-ECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECS-SSBCCTTCEEE-EETTTEE
T ss_pred             cCCCcc---eeEEe-ccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccC-CCCCCCCCccc-CCCCCcc
Confidence            765431   12234 366778899999999977655 46899999999999887765311 12354433333 4777 66


Q ss_pred             EEEEee-CCCeeeeecccccccccccccCccccccEEEeC-C-------CCceEEeccCCCCEEEEEEcCC-CeEEEEE-
Q 006825          517 SLSPKH-LDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-S-------DKPICSFQGHLDDVLDLSWSKS-QHLLSSS-  585 (630)
Q Consensus       517 ~lasgs-~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-s-------gk~l~tL~GHs~~V~sLafSPd-~~LaSgS-  585 (630)
                      +++++. .+++|                       .+|+. +       .+.++++.+|...+..|+|+|+ ++|++++ 
T Consensus       384 ~~~s~~~~d~~V-----------------------~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~  440 (543)
T 1nir_A          384 VWSTSHLGDGSI-----------------------SLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTT  440 (543)
T ss_dssp             EEEEEBSSSSEE-----------------------EEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCT
T ss_pred             EEEeccCCCceE-----------------------EEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecC
Confidence            777765 57888                       77776 4       6889999999999999999999 8888887 


Q ss_pred             ------CCCcEEEEeCCCCcEE-EEE--------e-cCCceEEEE-cCCCcEEEEe
Q 006825          586 ------MDKTVRLWHLSSKTCL-KIF--------S-HSDYDISLV-DRLMLRFAYG  624 (630)
Q Consensus       586 ------~DgtVrIWDl~tg~~l-~t~--------~-H~~~V~sVa-s~~~~~lAsg  624 (630)
                            .+++|.|||+.+++++ ..+        . |...|..++ ++++..+.++
T Consensus       441 ~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s  496 (543)
T 1nir_A          441 FNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFS  496 (543)
T ss_dssp             TCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEE
T ss_pred             CCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEE
Confidence                  3789999999999887 554        2 678888888 7777777654

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.83  E-value=1.4e-18  Score=194.81  Aligned_cols=223  Identities=11%  Similarity=0.029  Sum_probs=170.2

Q ss_pred             eeEEEEcCCCceEeeecceeeec----------C-ccceeEEEeec----ceEeecCCCccEecccCCCCceeEEecCCc
Q 006825          315 WKKVKEVGTGRQLTIEEFEMCVG----------H-SPIVQELMRRQ----NVEEGNKDSFDLNNNGSSGGGMKSKKKGSW  379 (630)
Q Consensus       315 ~~~l~dv~TG~~lt~eef~~l~G----------H-s~~V~~Lafs~----~laSgS~D~tvr~vWD~~tG~~~~~lk~gH  379 (630)
                      ...+||..|++++     .++..          | .+.|..++++|    .+++...++++. +||..+++.+......+
T Consensus       249 ~v~v~D~~t~~~~-----~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~-vvd~~~~~~l~~~~i~~  322 (543)
T 1nir_A          249 QFAIMDGETLEPK-----QIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVL-LVNYKDIDNLTVTSIGA  322 (543)
T ss_dssp             EEEEEETTTCCEE-----EEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEE-EEECTTSSSCEEEEEEC
T ss_pred             eEEEEeccccccc-----eeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEE-EEEecCCCcceeEEecc
Confidence            3568899999888     33332          2 34789999998    688899999999 99999877655222256


Q ss_pred             cCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecc----c
Q 006825          380 FKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQA----H  455 (630)
Q Consensus       380 ~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~g----H  455 (630)
                      ...+..++|+|+|+++.                            +++..+.+|.+||..++++     +.++..    |
T Consensus       323 ~~~~~~~~~spdg~~l~----------------------------va~~~~~~v~v~D~~tg~l-----~~~i~~g~~ph  369 (543)
T 1nir_A          323 APFLHDGGWDSSHRYFM----------------------------TAANNSNKVAVIDSKDRRL-----SALVDVGKTPH  369 (543)
T ss_dssp             CSSCCCEEECTTSCEEE----------------------------EEEGGGTEEEEEETTTTEE-----EEEEECSSSBC
T ss_pred             CcCccCceECCCCCEEE----------------------------EEecCCCeEEEEECCCCeE-----EEeeccCCCCC
Confidence            67788899999999764                            3445577899999988764     444543    7


Q ss_pred             CcCEEEEEEccC-CCEEEEEe-CCCcEEEEECcC-------CceeeeeecccccCcccceEEEEECCCCCEEEEeeC---
Q 006825          456 NGSIWSIKFSLD-GRYLASAG-EDCVIHVWQVVE-------SERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHL---  523 (630)
Q Consensus       456 t~~V~sVaFSpD-G~~LASgS-~DgtIrVWDl~t-------g~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~---  523 (630)
                      .+....+ ++|+ |.+++|+. .|++|.|||+.+       .+.++++     .+|...+..++++|++++|+++..   
T Consensus       370 ~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l-----~~~g~~~~~v~~~pdg~~l~v~~~~~~  443 (543)
T 1nir_A          370 PGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAEL-----QGQGGGSLFIKTHPKSSHLYVDTTFNP  443 (543)
T ss_dssp             CTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEE-----ECSCSCCCCEECCTTCCEEEECCTTCS
T ss_pred             CCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEE-----EcCCCCceEEEcCCCCCcEEEecCCCC
Confidence            6555444 5776 77788876 689999999988       6777775     677778888999999999999862   


Q ss_pred             ----CCeeeeecccccccccccccCccccccEEEeC-CCCce-EEe--------ccCCCCEEEEEEcCC-CeEEEEE---
Q 006825          524 ----DNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPI-CSF--------QGHLDDVLDLSWSKS-QHLLSSS---  585 (630)
Q Consensus       524 ----Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l-~tL--------~GHs~~V~sLafSPd-~~LaSgS---  585 (630)
                          +.+|                       .+|++ +++.+ ..+        ..|...|..+.|+|+ ++|+.+.   
T Consensus       444 ~~~~~~~v-----------------------~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~  500 (543)
T 1nir_A          444 DARISQSV-----------------------AVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNG  500 (543)
T ss_dssp             SHHHHTCE-----------------------EEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECC
T ss_pred             CcccCceE-----------------------EEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecC
Confidence                5566                       78887 55555 343        456788999999999 7776552   


Q ss_pred             --CCCcEEEEeCCCCcEEEEEe
Q 006825          586 --MDKTVRLWHLSSKTCLKIFS  605 (630)
Q Consensus       586 --~DgtVrIWDl~tg~~l~t~~  605 (630)
                        .|++|.|||..|++++++++
T Consensus       501 ~~~~~~i~v~D~~t~~~~~~i~  522 (543)
T 1nir_A          501 KNDSSALVVVDDKTLKLKAVVK  522 (543)
T ss_dssp             TTSCCEEEEEETTTTEEEEEEC
T ss_pred             CCCCCeEEEEECCCceEEEeec
Confidence              48999999999999999987

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.82  E-value=5.9e-19  Score=201.50  Aligned_cols=317  Identities=6%  Similarity=-0.081  Sum_probs=210.5

Q ss_pred             CceeecCCCCcccCCCccccccCCCCCcccccccEEEEECCCCcEEEEeeecCCCceeEEEEcCCCceEeeec-----ce
Q 006825          259 DSMSINGNGNYIGNSGEVVEDFDGNGTAGVAEQGCLIKNLDNGKEFVVNEIQEDGTWKKVKEVGTGRQLTIEE-----FE  333 (630)
Q Consensus       259 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~LddG~~~~v~e~~~dg~~~~l~dv~TG~~lt~ee-----f~  333 (630)
                      .++++||||++|+..+...        .+.....+.+|++++|+...+.......        ..|+.++.++     ..
T Consensus        40 ~~~~~SpdG~~la~~~~~d--------~~~~~~~i~~~d~~~g~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~  103 (741)
T 2ecf_A           40 MKPKVAPDGSRVTFLRGKD--------SDRNQLDLWSYDIGSGQTRLLVDSKVVL--------PGTETLSDEEKARRERQ  103 (741)
T ss_dssp             EEEEECTTSSEEEEEECCS--------SCTTEEEEEEEETTTCCEEEEECGGGTC-------------------------
T ss_pred             CCceEecCCCEEEEEeccC--------CCCcccEEEEEECCCCceeEccchhhcc--------cccccccchhhhhhhhh
Confidence            4589999999995555200        0011237889999998765544332110        0111111111     01


Q ss_pred             eeecCccceeEEEeec---ceEeecCCCccEecccCCCCc--eeEEecCCccCCEEEEEEcCCCCeEEeecCCC------
Q 006825          334 MCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGG--MKSKKKGSWFKSIRTVASSVTGHKERRSSDER------  402 (630)
Q Consensus       334 ~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~--~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~------  402 (630)
                      .+. ....|..++|+|   .|+.++. ++++ +||+.++.  ....+. .|...+..++|||||++|+.++++.      
T Consensus       104 ~~~-~~~~v~~~~~SpDg~~l~~~~~-~~i~-~~d~~~~~~~~~~~l~-~~~~~~~~~~~SPDG~~la~~~~~~i~~~d~  179 (741)
T 2ecf_A          104 RIA-AMTGIVDYQWSPDAQRLLFPLG-GELY-LYDLKQEGKAAVRQLT-HGEGFATDAKLSPKGGFVSFIRGRNLWVIDL  179 (741)
T ss_dssp             ----CCEESCCCEECTTSSEEEEEET-TEEE-EEESSSCSTTSCCBCC-CSSSCEEEEEECTTSSEEEEEETTEEEEEET
T ss_pred             hhc-cccCcceeEECCCCCEEEEEeC-CcEE-EEECCCCCcceEEEcc-cCCcccccccCCCCCCEEEEEeCCcEEEEec
Confidence            111 124578899999   5777776 8999 99999883  445566 7888999999999999999988654      


Q ss_pred             CCcc----ccCCcce----------------EEEeecCCCe--EEEecCCc-----------------------------
Q 006825          403 DTSS----EKGGRRS----------------SSATDDSQDV--SFHGQERV-----------------------------  431 (630)
Q Consensus       403 dt~s----~~gh~~~----------------Vsa~~~s~d~--l~Sgs~Dg-----------------------------  431 (630)
                      +++.    ...+...                +..+.+++++  ++.+..|.                             
T Consensus       180 ~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~  259 (741)
T 2ecf_A          180 ASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDA  259 (741)
T ss_dssp             TTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSC
T ss_pred             CCCCEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCC
Confidence            1111    1222221                3567888888  66665443                             


Q ss_pred             ----EEEEEeCCC-CcccceeeeeEecccCcCEEEEEEccCCCEEEEEeC-----CCcEEEEECcCCceeeeeecccccC
Q 006825          432 ----RVRQYGKSC-KDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGE-----DCVIHVWQVVESERKGELLEKQEDG  501 (630)
Q Consensus       432 ----~VriWd~~~-~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~-----DgtIrVWDl~tg~~~~~l~~~~~~g  501 (630)
                          .|++||..+ ++...+   .....|...|..++| |||++|+.++.     +..|++||+.+++....+.. ...+
T Consensus       260 ~~~~~l~~~d~~~~~~~~~~---~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~-~~~~  334 (741)
T 2ecf_A          260 NVQVKLGVISPAEQAQTQWI---DLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHE-TSPT  334 (741)
T ss_dssp             CCEEEEEEECSSTTCCCEEE---CCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEE-ECSS
T ss_pred             CCeeEEEEEECCCCCceEEe---cCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEc-CCCC
Confidence                889999887 653211   111258889999999 99999997764     67899999999876654311 0011


Q ss_pred             cccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEe--CCCCceEEeccCCCCEEEE-EEcCC
Q 006825          502 HLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFA--LSDKPICSFQGHLDDVLDL-SWSKS  578 (630)
Q Consensus       502 h~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwd--lsgk~l~tL~GHs~~V~sL-afSPd  578 (630)
                      ....+..++|+|||++++++..++.+                       .+|.  ..++ +..+.+|...|..+ .|+|+
T Consensus       335 ~~~~~~~~~~spdg~~~~~~~~~g~~-----------------------~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~d  390 (741)
T 2ecf_A          335 WVPLHNSLRFLDDGSILWSSERTGFQ-----------------------HLYRIDSKGK-AAALTHGNWSVDELLAVDEK  390 (741)
T ss_dssp             CCCCCSCCEECTTSCEEEEECTTSSC-----------------------EEEEECSSSC-EEESCCSSSCEEEEEEEETT
T ss_pred             cCCcCCceEECCCCeEEEEecCCCcc-----------------------EEEEEcCCCC-eeeeeecceEEEeEeEEeCC
Confidence            11134578999999988888888866                       4444  4566 88888898899887 59999


Q ss_pred             -CeEE-EEECCC--cEEEEeCCC-CcEEEEEecCCceEEEE-cCCCcEEEEe
Q 006825          579 -QHLL-SSSMDK--TVRLWHLSS-KTCLKIFSHSDYDISLV-DRLMLRFAYG  624 (630)
Q Consensus       579 -~~La-SgS~Dg--tVrIWDl~t-g~~l~t~~H~~~V~sVa-s~~~~~lAsg  624 (630)
                       ++|+ +++.|+  +++||++.. +.++..+.+...+.+++ ++++..++..
T Consensus       391 g~~l~~~~~~~~~~~~~l~~~~~~g~~~~~l~~~~~~~~~~~spdg~~l~~~  442 (741)
T 2ecf_A          391 AGLAYFRAGIESARESQIYAVPLQGGQPQRLSKAPGMHSASFARNASVYVDS  442 (741)
T ss_dssp             TTEEEEEECSSCTTCBEEEEEETTCCCCEECCCSCSEEEEEECTTSSEEEEE
T ss_pred             CCEEEEEEeCCCCceEEEEEEEcCCCCeeecccCCCceEEEECCCCCEEEEE
Confidence             6665 555565  899999875 66667777677788888 8888877765

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.82  E-value=1.1e-18  Score=198.48  Aligned_cols=271  Identities=10%  Similarity=-0.060  Sum_probs=180.9

Q ss_pred             eEEEEcCCCceEeeecceeeecCccceeEEEeec---ceEeecCCCccEecccCCCCceeEEecCCccCC----------
Q 006825          316 KKVKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKS----------  382 (630)
Q Consensus       316 ~~l~dv~TG~~lt~eef~~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~----------  382 (630)
                      ..+|++.+|+..   .+....+|...|..++|+|   .||.++. ++++ +||+.+|+..+... .+...          
T Consensus        93 i~~~d~~~~~~~---~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~-~~~~~~g~~~~~~~-~~~~~~~~~g~~~~v  166 (723)
T 1xfd_A           93 YVLSKIPHGDPQ---SLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIY-YCAHVGKQAIRVVS-TGKEGVIYNGLSDWL  166 (723)
T ss_dssp             EEEEESSSCCCE---ECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEE-EESSSSSCCEEEEC-CCBTTTEEEEECCHH
T ss_pred             EEEEECCCCceE---eccCCccccccccccEECCCCCEEEEEEC-CeEE-EEECCCCceEEEec-CCCCCceECccccee
Confidence            458899888753   2344557777899999999   6888776 7899 99999998877666 44433          


Q ss_pred             --------EEEEEEcCCCCeEEeecCCCCCcc-------ccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCccccee
Q 006825          383 --------IRTVASSVTGHKERRSSDERDTSS-------EKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALY  447 (630)
Q Consensus       383 --------V~sVAfSpdG~~lasgS~D~dt~s-------~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~  447 (630)
                              +.+++|||||++|+.++.+.....       ...+...+..+.+..++..  ..+.+|++||..+++.    
T Consensus       167 ~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~--~~~~~l~~~d~~~~~~----  240 (723)
T 1xfd_A          167 YEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSE--NPSISLHVIGLNGPTH----  240 (723)
T ss_dssp             HHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSC--CCEEEEEEEESSSSCC----
T ss_pred             EEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCC--CCeeEEEEEECCCCce----
Confidence                    378999999999999876541100       0112223445555544421  3356899999987752    


Q ss_pred             eeeEecc------cCcCEEEEEEccCCCEEEEEeC----CCcEEEEECcCCceeeeeecccccCcccce----EEEEECC
Q 006825          448 KCQEIQA------HNGSIWSIKFSLDGRYLASAGE----DCVIHVWQVVESERKGELLEKQEDGHLNML----LLANGSP  513 (630)
Q Consensus       448 ~v~tL~g------Ht~~V~sVaFSpDG~~LASgS~----DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V----~svafSp  513 (630)
                       ...+..      |...|..++|+|||++|++.+.    +..|++||+.+++....+.    ..+...+    ..++|+|
T Consensus       241 -~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~----~~~~~~~~~~~~~~~~sp  315 (723)
T 1xfd_A          241 -DLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHE----DESEAWLHRQNEEPVFSK  315 (723)
T ss_dssp             -CEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEE----EECSSCCCCCCCCCEECT
T ss_pred             -eEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEE----eccCCEEeccCCCceEcC
Confidence             233444      4778999999999999987753    3689999999887655431    1222332    3789999


Q ss_pred             CCCEEEEe--eCCC----eeeeecccccccccccccCccccccEEEe-CCCCc---eEEeccCCCCEEE-EEEcCC-CeE
Q 006825          514 EPTSLSPK--HLDN----HLEKKRRGRSINRKSLSLDHMVVPETVFA-LSDKP---ICSFQGHLDDVLD-LSWSKS-QHL  581 (630)
Q Consensus       514 dg~~lasg--s~Dg----~I~i~~~~~~~~~~s~s~d~~i~~~~Vwd-lsgk~---l~tL~GHs~~V~s-LafSPd-~~L  581 (630)
                      ||+.|+..  ..++    ...+                     .+|+ ..+..   +..+..+...+.. ++|+|+ ++|
T Consensus       316 dg~~l~~~~~~~~~~~~~~~~l---------------------~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l  374 (723)
T 1xfd_A          316 DGRKFFFIRAIPQGGRGKFYHI---------------------TVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKI  374 (723)
T ss_dssp             TSCSEEEEEEECCSSSSCEEEE---------------------EEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEE
T ss_pred             CCCeEEEEEecccCCCcceeEE---------------------EEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCEE
Confidence            99977754  3455    2211                     5566 34443   5556544455554 699999 888


Q ss_pred             EEEECC---CcEEEEeCCCCc--EEEEEe----cCCceEEEE-cCCCcEEEEe
Q 006825          582 LSSSMD---KTVRLWHLSSKT--CLKIFS----HSDYDISLV-DRLMLRFAYG  624 (630)
Q Consensus       582 aSgS~D---gtVrIWDl~tg~--~l~t~~----H~~~V~sVa-s~~~~~lAsg  624 (630)
                      +..+.+   ++++||++....  ....+.    |...|..++ ++++..++..
T Consensus       375 ~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~spdg~~l~~~  427 (723)
T 1xfd_A          375 YFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLK  427 (723)
T ss_dssp             EEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEE
T ss_pred             EEEEcCCCCcceEEEEEeCCCCCCcceecccccCCCCeEEEEECCCCCEEEEE
Confidence            766655   899999986532  333343    566778888 8888877764

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.82  E-value=2e-18  Score=206.69  Aligned_cols=253  Identities=11%  Similarity=-0.002  Sum_probs=199.4

Q ss_pred             eeeecCccceeEEEeec--ceEeecCCCccEecccCCC-CceeEEecCCccCCEEEEEEcCCCCeEEeecCCC----CC-
Q 006825          333 EMCVGHSPIVQELMRRQ--NVEEGNKDSFDLNNNGSSG-GGMKSKKKGSWFKSIRTVASSVTGHKERRSSDER----DT-  404 (630)
Q Consensus       333 ~~l~GHs~~V~~Lafs~--~laSgS~D~tvr~vWD~~t-G~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~----dt-  404 (630)
                      ..+.+|...|..++|++  .+++++.|++++ +|.+.. +.....+. +|. .+..++|+|||++++.+.+..    +. 
T Consensus       197 ~~l~~~~~~v~~~~~s~d~l~~~~~~dg~~~-l~~~~~~g~~~~~l~-~~~-~~~~~~~SpDG~~la~~~~~~i~~~d~~  273 (1045)
T 1k32_A          197 KKIVDMSTHVSSPVIVGHRIYFITDIDGFGQ-IYSTDLDGKDLRKHT-SFT-DYYPRHLNTDGRRILFSKGGSIYIFNPD  273 (1045)
T ss_dssp             EEEECCSSCCEEEEEETTEEEEEECTTSSCE-EEEEETTSCSCEECC-CCC-SSCEEEEEESSSCEEEEETTEEEEECTT
T ss_pred             EECcCCCCcccceEEeCCEEEEEEeccCceE-EEEEeCCCCcceEec-CCC-CcceeeEcCCCCEEEEEeCCEEEEecCC
Confidence            56689999999999998  566778889999 998754 55666666 555 466789999999998875432    11 


Q ss_pred             -c---cccC-----------CcceEEEeecC-CCe--EEEecCCcEEEEEeCCCCcccceeeeeEecccCc-CEEEEEEc
Q 006825          405 -S---SEKG-----------GRRSSSATDDS-QDV--SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNG-SIWSIKFS  465 (630)
Q Consensus       405 -~---s~~g-----------h~~~Vsa~~~s-~d~--l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~-~V~sVaFS  465 (630)
                       .   .+.+           |...+..+.++ +++  ++.+. ++.|++|+...++      ...+..|.. .+..++|+
T Consensus       274 ~~~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~------~~~~~~~~~~~~~~~~~s  346 (1045)
T 1k32_A          274 TEKIEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTY------VLKVPEPLRIRYVRRGGD  346 (1045)
T ss_dssp             TCCEEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSB------EEECSCCSCEEEEEECSS
T ss_pred             ceEeeeeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCc------eEEccCCCcceEEeeeEc
Confidence             1   1122           23357778888 887  55555 8899999987664      334677888 89999999


Q ss_pred             cCCCEEEEEeCCCcEE-EEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccC
Q 006825          466 LDGRYLASAGEDCVIH-VWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLD  544 (630)
Q Consensus       466 pDG~~LASgS~DgtIr-VWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d  544 (630)
                       ||+.|++++.+..|. +|++.+++.. .+     .+|...+..++|+|||++|++++.++.|                 
T Consensus       347 -dg~~l~~~s~~~~l~~~~d~~~~~~~-~l-----~~~~~~~~~~~~SpDG~~la~~~~~~~v-----------------  402 (1045)
T 1k32_A          347 -TKVAFIHGTREGDFLGIYDYRTGKAE-KF-----EENLGNVFAMGVDRNGKFAVVANDRFEI-----------------  402 (1045)
T ss_dssp             -SEEEEEEEETTEEEEEEEETTTCCEE-EC-----CCCCCSEEEEEECTTSSEEEEEETTSEE-----------------
T ss_pred             -CCCeEEEEECCCceEEEEECCCCCce-Ee-----cCCccceeeeEECCCCCEEEEECCCCeE-----------------
Confidence             999999999988888 9999876543 32     3677889999999999999999999988                 


Q ss_pred             ccccccEEEeC-CCCceEEeccCCCCEEEEEEcCC-CeEEEEECCC----------cEEEEeCCCCcEEEEEe-cCCceE
Q 006825          545 HMVVPETVFAL-SDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDK----------TVRLWHLSSKTCLKIFS-HSDYDI  611 (630)
Q Consensus       545 ~~i~~~~Vwdl-sgk~l~tL~GHs~~V~sLafSPd-~~LaSgS~Dg----------tVrIWDl~tg~~l~t~~-H~~~V~  611 (630)
                            .+|++ +++....+.+|...|..++|+|| ++|++++.++          +|++||+.+++ +..+. |...+.
T Consensus       403 ------~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~~~~~  475 (1045)
T 1k32_A          403 ------MTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTENSHDY  475 (1045)
T ss_dssp             ------EEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSSSBEE
T ss_pred             ------EEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeCCCcccC
Confidence                  88888 66666667789999999999999 8898887754          99999999988 55555 888899


Q ss_pred             EEE-cCCCcEEEEecc
Q 006825          612 SLV-DRLMLRFAYGAF  626 (630)
Q Consensus       612 sVa-s~~~~~lAsgs~  626 (630)
                      +++ ++++..+++.+.
T Consensus       476 ~~~~spdG~~l~~~s~  491 (1045)
T 1k32_A          476 APAFDADSKNLYYLSY  491 (1045)
T ss_dssp             EEEECTTSCEEEEEES
T ss_pred             CceEcCCCCEEEEEec
Confidence            988 888888877654

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.81  E-value=5.2e-17  Score=166.55  Aligned_cols=224  Identities=9%  Similarity=-0.019  Sum_probs=169.4

Q ss_pred             eeEEEeec----ceEeecCCCccEecccCCCCceeEEecCCccC--------CEEEEEEcCCCCeEEeecCCCCCccccC
Q 006825          342 VQELMRRQ----NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFK--------SIRTVASSVTGHKERRSSDERDTSSEKG  409 (630)
Q Consensus       342 V~~Lafs~----~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~--------~V~sVAfSpdG~~lasgS~D~dt~s~~g  409 (630)
                      +..++|+|    .+++...++++. +||..+++.+.++..++..        .+.+++|+|+|+++..+           
T Consensus        91 ~~~~~~s~dg~~l~v~~~~~~~v~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~-----------  158 (353)
T 3vgz_A           91 PFGATINNTTQTLWFGNTVNSAVT-AIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYIS-----------  158 (353)
T ss_dssp             CCSEEEETTTTEEEEEETTTTEEE-EEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEE-----------
T ss_pred             cceEEECCCCCEEEEEecCCCEEE-EEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEE-----------
Confidence            55677777    356667789999 9999999998888743322        27889999999876422           


Q ss_pred             CcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCc
Q 006825          410 GRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESE  489 (630)
Q Consensus       410 h~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~  489 (630)
                                      ....++.|++||..+++     .+..+..+...+..++|+|+|++|+.++.++.|.+||+.+++
T Consensus       159 ----------------~~~~~~~i~~~d~~~~~-----~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~  217 (353)
T 3vgz_A          159 ----------------GIGKESVIWVVDGGNIK-----LKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNK  217 (353)
T ss_dssp             ----------------EESSSCEEEEEETTTTE-----EEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTE
T ss_pred             ----------------ecCCCceEEEEcCCCCc-----eEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCe
Confidence                            11346789999998764     345566566678999999999999999999999999999988


Q ss_pred             eeeeeecccccCcccceEEEEECCCCCEEEEeeC-CCeeeeecccccccccccccCccccccEEEeC-CCCceEEeccCC
Q 006825          490 RKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHL-DNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHL  567 (630)
Q Consensus       490 ~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~-Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL~GHs  567 (630)
                      ....+... ..++...+..++|+|++++++.+.. ++.|                       .+|+. +++.+..+..+.
T Consensus       218 ~~~~~~~~-~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v-----------------------~~~d~~~~~~~~~~~~~~  273 (353)
T 3vgz_A          218 ILSRKKLL-DDGKEHFFINISLDTARQRAFITDSKAAEV-----------------------LVVDTRNGNILAKVAAPE  273 (353)
T ss_dssp             EEEEEECC-CSSSCCCEEEEEEETTTTEEEEEESSSSEE-----------------------EEEETTTCCEEEEEECSS
T ss_pred             EEEEEEcC-CCCCCcccceEEECCCCCEEEEEeCCCCEE-----------------------EEEECCCCcEEEEEEcCC
Confidence            77665311 2345667888999999997766554 4777                       77777 667776666443


Q ss_pred             CCEEEEEEcCC-CeE-EEEECCCcEEEEeCCCCcEEEEEecCCceEEEE-cCCCcEEEEe
Q 006825          568 DDVLDLSWSKS-QHL-LSSSMDKTVRLWHLSSKTCLKIFSHSDYDISLV-DRLMLRFAYG  624 (630)
Q Consensus       568 ~~V~sLafSPd-~~L-aSgS~DgtVrIWDl~tg~~l~t~~H~~~V~sVa-s~~~~~lAsg  624 (630)
                      .  ..++|+|+ ++| ++...+++|.+||+.+++.+..+.....+.+++ ++++..+..+
T Consensus       274 ~--~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~  331 (353)
T 3vgz_A          274 S--LAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTPTHPNSLALSADGKTLYVS  331 (353)
T ss_dssp             C--CCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECCSEEEEEEECTTSCEEEEE
T ss_pred             C--ceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecCCCCCeEEEcCCCCEEEEE
Confidence            2  57999999 655 455579999999999999999998666888898 7777755443

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.79  E-value=2.5e-18  Score=187.28  Aligned_cols=205  Identities=13%  Similarity=0.018  Sum_probs=150.5

Q ss_pred             ccceeEEEeec---ceEeecCCCccEecccCCCC----------ceeEE----ecCCccCCEEEEEEcCCCCeEEeecCC
Q 006825          339 SPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGG----------GMKSK----KKGSWFKSIRTVASSVTGHKERRSSDE  401 (630)
Q Consensus       339 s~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG----------~~~~~----lk~gH~~~V~sVAfSpdG~~lasgS~D  401 (630)
                      ...+..|++++   .+++++.|+ ++ +|+...-          ..+..    ....|...|.+++|+|+|++|+.+   
T Consensus        36 ~~~~n~lavs~~~~~l~~~~~dg-v~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~---  110 (434)
T 2oit_A           36 KERSSLLAVSNKYGLVFAGGASG-LQ-IFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSAC---  110 (434)
T ss_dssp             CSCCBCEEEETTTTEEEEEETTE-EE-EEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEE---
T ss_pred             CCCccEEEEecCCCEEEEECCCE-EE-EEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEE---
Confidence            45678889987   688888887 77 7653210          01110    112466779999999998877510   


Q ss_pred             CCCccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCC-----cc-cceeeeeEecccCcCEEEEEEccC-CCEEEEE
Q 006825          402 RDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCK-----DL-TALYKCQEIQAHNGSIWSIKFSLD-GRYLASA  474 (630)
Q Consensus       402 ~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~-----el-~~~~~v~tL~gHt~~V~sVaFSpD-G~~LASg  474 (630)
                                            ..+++.|++|++||+...     +. ..+..+..+.+|...|++|+|+|+ +.+||++
T Consensus       111 ----------------------~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~  168 (434)
T 2oit_A          111 ----------------------MMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVC  168 (434)
T ss_dssp             ----------------------EEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEE
T ss_pred             ----------------------EeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEE
Confidence                                  015678889999997543     11 122335677899999999999997 8999999


Q ss_pred             eCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEe
Q 006825          475 GEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFA  554 (630)
Q Consensus       475 S~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwd  554 (630)
                      +.|++|+|||+.++.....     ..+|...|.+++|+|+|++|++++.|++|                       ++|+
T Consensus       169 s~Dg~v~iwD~~~~~~~~~-----~~~~~~~v~~v~wspdg~~lasgs~dg~v-----------------------~iwd  220 (434)
T 2oit_A          169 LADGSIAVLQVTETVKVCA-----TLPSTVAVTSVCWSPKGKQLAVGKQNGTV-----------------------VQYL  220 (434)
T ss_dssp             ETTSCEEEEEESSSEEEEE-----EECGGGCEEEEEECTTSSCEEEEETTSCE-----------------------EEEC
T ss_pred             ECCCeEEEEEcCCCcceee-----ccCCCCceeEEEEcCCCCEEEEEcCCCcE-----------------------EEEc
Confidence            9999999999998865444     25688899999999999999999999999                       6777


Q ss_pred             CCCCceEEeccC-------CCCEEEEEEcCC-CeEE-EEECCCc------EEEEeCCCC
Q 006825          555 LSDKPICSFQGH-------LDDVLDLSWSKS-QHLL-SSSMDKT------VRLWHLSSK  598 (630)
Q Consensus       555 lsgk~l~tL~GH-------s~~V~sLafSPd-~~La-SgS~Dgt------VrIWDl~tg  598 (630)
                      ..++...++..|       ...|.+++|+++ .+++ +...||.      +++|++...
T Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~  279 (434)
T 2oit_A          221 PTLQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKK  279 (434)
T ss_dssp             TTCCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred             cCCcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccC
Confidence            765555555544       338999999998 5553 3445543      899999864

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.78  E-value=1.8e-17  Score=188.52  Aligned_cols=254  Identities=9%  Similarity=-0.062  Sum_probs=181.4

Q ss_pred             cceeEEEeec--ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCC------CC-----cc
Q 006825          340 PIVQELMRRQ--NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDER------DT-----SS  406 (630)
Q Consensus       340 ~~V~~Lafs~--~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~------dt-----~s  406 (630)
                      ..|..++|+|  .++.+ .|++++ +||+.+++.... . .|...+.+++|||||++++.+.+..      ++     +.
T Consensus        82 ~~v~~~~~spd~~~~~~-~~~~i~-~~d~~~~~~~~l-~-~~~~~~~~~~~SpdG~~la~~~~~~i~v~~~~~~~~~~g~  157 (706)
T 2z3z_A           82 FPSFRTLDAGRGLVVLF-TQGGLV-GFDMLARKVTYL-F-DTNEETASLDFSPVGDRVAYVRNHNLYIARGGKLGEGMSR  157 (706)
T ss_dssp             CCCEEEEETTTTEEEEE-ETTEEE-EEETTTTEEEEE-E-CCTTCCTTCEECTTSSEEEEEETTEEEEEECBCTTSCCCC
T ss_pred             cCceeEEECCCCeEEEE-ECCEEE-EEECCCCceEEc-c-CCcccccCCcCCCCCCEEEEEECCeEEEEecCcccccCCC
Confidence            4589999999  33333 469999 999998876544 3 4677788999999999999865432      22     22


Q ss_pred             ----ccCCcce--------------EEEeecCCCe--EEEec---------------------------------CCcEE
Q 006825          407 ----EKGGRRS--------------SSATDDSQDV--SFHGQ---------------------------------ERVRV  433 (630)
Q Consensus       407 ----~~gh~~~--------------Vsa~~~s~d~--l~Sgs---------------------------------~Dg~V  433 (630)
                          ...+...              +.++.+++++  ++.+.                                 .+.+|
T Consensus       158 ~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l  237 (706)
T 2z3z_A          158 AIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTV  237 (706)
T ss_dssp             CEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEE
T ss_pred             cEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEE
Confidence                1222221              3677888888  66655                                 56789


Q ss_pred             EEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCC-----cEEEEECcCCceeeeeecccccCcccceEE
Q 006825          434 RQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDC-----VIHVWQVVESERKGELLEKQEDGHLNMLLL  508 (630)
Q Consensus       434 riWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~Dg-----tIrVWDl~tg~~~~~l~~~~~~gh~~~V~s  508 (630)
                      ++||+.+++...   +.....|...|..++|+|||++|++++.|+     +|++||+.+++....+...........+..
T Consensus       238 ~~~d~~~~~~~~---~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~  314 (706)
T 2z3z_A          238 GIYHLATGKTVY---LQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHP  314 (706)
T ss_dssp             EEEETTTTEEEE---CCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSC
T ss_pred             EEEECCCCceEe---eccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCC
Confidence            999998775321   111236788899999999999999988776     999999998844444321111111123457


Q ss_pred             EEECC--CCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeC--CCCceEEeccCCCCEEE-EEEcCC-CeEE
Q 006825          509 ANGSP--EPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL--SDKPICSFQGHLDDVLD-LSWSKS-QHLL  582 (630)
Q Consensus       509 vafSp--dg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl--sgk~l~tL~GHs~~V~s-LafSPd-~~La  582 (630)
                      ++|+|  +|++++++..++.+                       .+|.+  .++.+..+.+|...|.. ++|+|+ ++|+
T Consensus       315 ~~~sp~~dg~~l~~~~~~g~~-----------------------~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~  371 (706)
T 2z3z_A          315 LTFLPGSNNQFIWQSRRDGWN-----------------------HLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLY  371 (706)
T ss_dssp             CEECTTCSSEEEEEECTTSSC-----------------------EEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEE
T ss_pred             ceeecCCCCEEEEEEccCCcc-----------------------EEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEE
Confidence            89999  99999988888877                       55554  67778888888888887 899999 6666


Q ss_pred             EEE-CCC----cEEEEeCCCCcEEEEEecCCceEEEE-cCCCcEEEEe
Q 006825          583 SSS-MDK----TVRLWHLSSKTCLKIFSHSDYDISLV-DRLMLRFAYG  624 (630)
Q Consensus       583 SgS-~Dg----tVrIWDl~tg~~l~t~~H~~~V~sVa-s~~~~~lAsg  624 (630)
                      .++ .++    .|..||+.+++ +..+.|...+.+++ ++++..+++.
T Consensus       372 ~~~~~~~~~~~~l~~~d~~~~~-~~~l~~~~~~~~~~~spdg~~l~~~  418 (706)
T 2z3z_A          372 FESTEASPLERHFYCIDIKGGK-TKDLTPESGMHRTQLSPDGSAIIDI  418 (706)
T ss_dssp             EEESSSCTTCBEEEEEETTCCC-CEESCCSSSEEEEEECTTSSEEEEE
T ss_pred             EEecCCCCceEEEEEEEcCCCC-ceeccCCCceEEEEECCCCCEEEEE
Confidence            554 444    67777887776 45556788889888 8888877765

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.78  E-value=9.4e-19  Score=198.99  Aligned_cols=268  Identities=9%  Similarity=-0.058  Sum_probs=182.1

Q ss_pred             CceEeeecceeeecCccceeEEEeec---ceEeecCCCccEecccCCCCceeEEecCCccC---CEEEEEEcCCCCeEEe
Q 006825          324 GRQLTIEEFEMCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFK---SIRTVASSVTGHKERR  397 (630)
Q Consensus       324 G~~lt~eef~~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~---~V~sVAfSpdG~~las  397 (630)
                      |+.++++++-... ....+..++|+|   ++++ +.|++++ +||+.+|+....+. +|..   .|.+++|||||++|+.
T Consensus         2 ~~~~~~~~~~~~~-~~~~~~~~~~spdg~~~~~-~~dg~i~-~~d~~~g~~~~~~~-~~~~~~~~v~~~~~SpDg~~l~~   77 (723)
T 1xfd_A            2 KKKVTVEDLFSED-FKIHDPEAKWISDTEFIYR-EQKGTVR-LWNVETNTSTVLIE-GKKIESLRAIRYEISPDREYALF   77 (723)
T ss_dssp             CCCCCHHHHTCTT-TCCCCCCCCBSSSSCBCCC-CSSSCEE-EBCGGGCCCEEEEC-TTTTTTTTCSEEEECTTSSEEEE
T ss_pred             CccccHHHHhCCC-CcccccccEEcCCCcEEEE-eCCCCEE-EEECCCCcEEEEec-cccccccccceEEECCCCCEEEE
Confidence            4556666654332 224477889998   4544 7899999 99999999888877 6765   4999999999999988


Q ss_pred             ecCCCCCccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCC
Q 006825          398 SSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGED  477 (630)
Q Consensus       398 gS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~D  477 (630)
                      ++.++.                    ....+.++.|++||+.+++..   .+....+|...|..++|||||++||.++. 
T Consensus        78 ~~~~~~--------------------~~~~~~~~~i~~~d~~~~~~~---~l~~~~~~~~~~~~~~~SPdG~~la~~~~-  133 (723)
T 1xfd_A           78 SYNVEP--------------------IYQHSYTGYYVLSKIPHGDPQ---SLDPPEVSNAKLQYAGWGPKGQQLIFIFE-  133 (723)
T ss_dssp             EESCCC--------------------CSSSCCCSEEEEEESSSCCCE---ECCCTTCCSCCCSBCCBCSSTTCEEEEET-
T ss_pred             EecCcc--------------------ceeecceeeEEEEECCCCceE---eccCCccccccccccEECCCCCEEEEEEC-
Confidence            765531                    011234578999999887531   22334566667999999999999999986 


Q ss_pred             CcEEEEECcCCceeeeeecccccCccc------------------ceEEEEECCCCCEEEEeeCCC-eeeeecccccc--
Q 006825          478 CVIHVWQVVESERKGELLEKQEDGHLN------------------MLLLANGSPEPTSLSPKHLDN-HLEKKRRGRSI--  536 (630)
Q Consensus       478 gtIrVWDl~tg~~~~~l~~~~~~gh~~------------------~V~svafSpdg~~lasgs~Dg-~I~i~~~~~~~--  536 (630)
                      +.|++||+.+++.....     ..+..                  .+..++|+|||+.|++++.++ .+.+|......  
T Consensus       134 ~~i~~~~~~~g~~~~~~-----~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~  208 (723)
T 1xfd_A          134 NNIYYCAHVGKQAIRVV-----STGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGS  208 (723)
T ss_dssp             TEEEEESSSSSCCEEEE-----CCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSS
T ss_pred             CeEEEEECCCCceEEEe-----cCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCc
Confidence            79999999988765443     22221                  237899999999999887553 34444322100  


Q ss_pred             -----cccccccCcc---ccccEEEeC-CCCceEEeccC------CCCEEEEEEcCC-CeEEEEEC----CCcEEEEeCC
Q 006825          537 -----NRKSLSLDHM---VVPETVFAL-SDKPICSFQGH------LDDVLDLSWSKS-QHLLSSSM----DKTVRLWHLS  596 (630)
Q Consensus       537 -----~~~s~s~d~~---i~~~~Vwdl-sgk~l~tL~GH------s~~V~sLafSPd-~~LaSgS~----DgtVrIWDl~  596 (630)
                           ....+..++.   .....+|++ +++....+..|      ...|..++|+|| ++|++.+.    +..|++||+.
T Consensus       209 ~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~  288 (723)
T 1xfd_A          209 IYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDAT  288 (723)
T ss_dssp             SSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETT
T ss_pred             CCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCC
Confidence                 0001111110   011278888 45555677665      678999999999 67766653    4689999999


Q ss_pred             CCcEEEEEe--cCCceE----EEE-cCCCcEEEEe
Q 006825          597 SKTCLKIFS--HSDYDI----SLV-DRLMLRFAYG  624 (630)
Q Consensus       597 tg~~l~t~~--H~~~V~----sVa-s~~~~~lAsg  624 (630)
                      ++++...+.  |..+|.    .++ +|++..+++.
T Consensus       289 ~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~  323 (723)
T 1xfd_A          289 TGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFI  323 (723)
T ss_dssp             TCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEE
T ss_pred             CCcceEEEEeccCCEEeccCCCceEcCCCCeEEEE
Confidence            999887765  455554    566 7777766543

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.78  E-value=5.5e-18  Score=193.50  Aligned_cols=265  Identities=14%  Similarity=-0.028  Sum_probs=193.2

Q ss_pred             CceEeeecce-eeecCccceeEEEeec---ceEeecC-CC-----ccEecccCCCCceeEEecCCccC------------
Q 006825          324 GRQLTIEEFE-MCVGHSPIVQELMRRQ---NVEEGNK-DS-----FDLNNNGSSGGGMKSKKKGSWFK------------  381 (630)
Q Consensus       324 G~~lt~eef~-~l~GHs~~V~~Lafs~---~laSgS~-D~-----tvr~vWD~~tG~~~~~lk~gH~~------------  381 (630)
                      ++.|+++.+. ...-....|..++|+|   .|++++. |+     +++ +||+.+|+....+. .|..            
T Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~-~~d~~~g~~~~~~~-~~~~~~~~~~~~~~~~   97 (741)
T 2ecf_A           20 AEKLTLEAITGPLPLSGPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLW-SYDIGSGQTRLLVD-SKVVLPGTETLSDEEK   97 (741)
T ss_dssp             --CCCHHHHTSSSCTTCCCCEEEEECTTSSEEEEEECCSSCTTEEEEE-EEETTTCCEEEEEC-GGGTC-----------
T ss_pred             cccccHHHHhccCCcCCCCCCCceEecCCCEEEEEeccCCCCcccEEE-EEECCCCceeEccc-hhhcccccccccchhh
Confidence            6777777654 2222345689999999   6899888 88     899 99999999877776 4433            


Q ss_pred             ------------CEEEEEEcCCCCeEEeecCCC------CCc------cccCCcceEEEeecCCCe--EEEecCCcEEEE
Q 006825          382 ------------SIRTVASSVTGHKERRSSDER------DTS------SEKGGRRSSSATDDSQDV--SFHGQERVRVRQ  435 (630)
Q Consensus       382 ------------~V~sVAfSpdG~~lasgS~D~------dt~------s~~gh~~~Vsa~~~s~d~--l~Sgs~Dg~Vri  435 (630)
                                  .|.+++|||||++|+.++...      +++      .+..|...+..+.+++++  ++.+. +..|++
T Consensus        98 ~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~  176 (741)
T 2ecf_A           98 ARRERQRIAAMTGIVDYQWSPDAQRLLFPLGGELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWV  176 (741)
T ss_dssp             ---------CCEESCCCEECTTSSEEEEEETTEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEE
T ss_pred             hhhhhhhhccccCcceeEECCCCCEEEEEeCCcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEE
Confidence                        378999999999999887532      222      356677789999999999  55554 569999


Q ss_pred             EeCCCCcccceeeeeEecccCcC----------------EEEEEEccCCCEEEEEeCCC---------------------
Q 006825          436 YGKSCKDLTALYKCQEIQAHNGS----------------IWSIKFSLDGRYLASAGEDC---------------------  478 (630)
Q Consensus       436 Wd~~~~el~~~~~v~tL~gHt~~----------------V~sVaFSpDG~~LASgS~Dg---------------------  478 (630)
                      |++.+++.     .+....+...                +..++|||||++|++++.|+                     
T Consensus       177 ~d~~~g~~-----~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~  251 (741)
T 2ecf_A          177 IDLASGRQ-----MQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQ  251 (741)
T ss_dssp             EETTTTEE-----EECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEE
T ss_pred             EecCCCCE-----EEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEe
Confidence            99987643     2222333332                47899999999999998876                     


Q ss_pred             ------------cEEEEECcC-CceeeeeecccccCcccceEEEEECCCCCEEEEeeCC-----Ceeeeecccccccccc
Q 006825          479 ------------VIHVWQVVE-SERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLD-----NHLEKKRRGRSINRKS  540 (630)
Q Consensus       479 ------------tIrVWDl~t-g~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~D-----g~I~i~~~~~~~~~~s  540 (630)
                                  .|++||+.+ ++......   ...|...+..++| |||++|+....+     ..|             
T Consensus       252 ~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~---~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i-------------  314 (741)
T 2ecf_A          252 RYPAAGDANVQVKLGVISPAEQAQTQWIDL---GKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDL-------------  314 (741)
T ss_dssp             ECCBTTSCCCEEEEEEECSSTTCCCEEECC---CSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEE-------------
T ss_pred             ecCCCCCCCCeeEEEEEECCCCCceEEecC---CCCcceEEEEEEe-CCCCEEEEEEecccCCeEEE-------------
Confidence                        889999988 76543321   1257788999999 999999876542     233             


Q ss_pred             cccCccccccEEEeC-CCCceEEeccCCC----CEEEEEEcCC-CeEEEEECCCcEEEEeCC-CCcEEEEEe-cCCceEE
Q 006825          541 LSLDHMVVPETVFAL-SDKPICSFQGHLD----DVLDLSWSKS-QHLLSSSMDKTVRLWHLS-SKTCLKIFS-HSDYDIS  612 (630)
Q Consensus       541 ~s~d~~i~~~~Vwdl-sgk~l~tL~GHs~----~V~sLafSPd-~~LaSgS~DgtVrIWDl~-tg~~l~t~~-H~~~V~s  612 (630)
                                .+|++ +++....+..|..    .+..++|+|| ++|++++.|++++||.+. .+. +..+. |...|..
T Consensus       315 ----------~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~  383 (741)
T 2ecf_A          315 ----------VEVTLASNQQRVLAHETSPTWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDE  383 (741)
T ss_dssp             ----------EEEETTTCCEEEEEEEECSSCCCCCSCCEECTTSCEEEEECTTSSCEEEEECSSSC-EEESCCSSSCEEE
T ss_pred             ----------EEEECCCCceEEEEEcCCCCcCCcCCceEECCCCeEEEEecCCCccEEEEEcCCCC-eeeeeecceEEEe
Confidence                      77887 5666666665553    4568999999 888899999999998876 455 66776 7778887


Q ss_pred             EE--cCCCcEEEEe
Q 006825          613 LV--DRLMLRFAYG  624 (630)
Q Consensus       613 Va--s~~~~~lAsg  624 (630)
                      +.  ++++..+++.
T Consensus       384 ~~~~s~dg~~l~~~  397 (741)
T 2ecf_A          384 LLAVDEKAGLAYFR  397 (741)
T ss_dssp             EEEEETTTTEEEEE
T ss_pred             EeEEeCCCCEEEEE
Confidence            63  7887766543

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.78  E-value=1.6e-17  Score=164.07  Aligned_cols=208  Identities=9%  Similarity=-0.034  Sum_probs=156.0

Q ss_pred             eEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCC
Q 006825          351 VEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQER  430 (630)
Q Consensus       351 laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~D  430 (630)
                      ..+++.|++++ +||+.+++.. .+. .|...|.+++|+|+|++++.++                              +
T Consensus        15 ~~~~~~~~~i~-~~d~~~~~~~-~~~-~~~~~v~~~~~spdg~~l~~~~------------------------------~   61 (297)
T 2ojh_A           15 GPGGSMRSSIE-IFNIRTRKMR-VVW-QTPELFEAPNWSPDGKYLLLNS------------------------------E   61 (297)
T ss_dssp             ---CCCCEEEE-EEETTTTEEE-EEE-EESSCCEEEEECTTSSEEEEEE------------------------------T
T ss_pred             cCCCCcceeEE-EEeCCCCcee-eec-cCCcceEeeEECCCCCEEEEEc------------------------------C
Confidence            34567899999 9999998866 444 6899999999999999886432                              4


Q ss_pred             cEEEEEeCCC-CcccceeeeeEeccc-CcCEEEEEEccCCCEEEEEe--CCCcEEEEEC--cCCceeeeeecccccCccc
Q 006825          431 VRVRQYGKSC-KDLTALYKCQEIQAH-NGSIWSIKFSLDGRYLASAG--EDCVIHVWQV--VESERKGELLEKQEDGHLN  504 (630)
Q Consensus       431 g~VriWd~~~-~el~~~~~v~tL~gH-t~~V~sVaFSpDG~~LASgS--~DgtIrVWDl--~tg~~~~~l~~~~~~gh~~  504 (630)
                      +.|++|+..+ ++.     ...+.+| ...|.+++|+|+|++|++++  .++.++||.+  .++. ...+     ..+ .
T Consensus        62 ~~i~~~d~~~~~~~-----~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~-----~~~-~  129 (297)
T 2ojh_A           62 GLLYRLSLAGDPSP-----EKVDTGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGT-PRLM-----TKN-L  129 (297)
T ss_dssp             TEEEEEESSSCCSC-----EECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCC-CEEC-----CSS-S
T ss_pred             CeEEEEeCCCCCCc-----eEeccccccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCc-eEEe-----ecC-C
Confidence            5799999987 643     2334455 47889999999999999999  4456666655  4433 2222     222 2


Q ss_pred             ceEEEEECCCCCEEE-EeeCCCeeeeecccccccccccccCccccccEEEeC--CCCceEEeccCCCCEEEEEEcCC-Ce
Q 006825          505 MLLLANGSPEPTSLS-PKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL--SDKPICSFQGHLDDVLDLSWSKS-QH  580 (630)
Q Consensus       505 ~V~svafSpdg~~la-sgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl--sgk~l~tL~GHs~~V~sLafSPd-~~  580 (630)
                      .+..++|+|++++++ ++..++.+                       .+|.+  .+.....+..|...+.+++|+|+ .+
T Consensus       130 ~~~~~~~spdg~~l~~~~~~~~~~-----------------------~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~  186 (297)
T 2ojh_A          130 PSYWHGWSPDGKSFTYCGIRDQVF-----------------------DIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRW  186 (297)
T ss_dssp             SEEEEEECTTSSEEEEEEEETTEE-----------------------EEEEEETTTCCEEECCCSSSCEEEEEECTTSSE
T ss_pred             CccceEECCCCCEEEEEECCCCce-----------------------EEEEEECCCCcceEcccCCCccccceECCCCCE
Confidence            488899999999877 67778877                       56653  45566778888899999999999 77


Q ss_pred             EEEEE-CCCcEEEEeCC-CCcEEEEEe-cCCceEEEE-cCCCcEEEEecc
Q 006825          581 LLSSS-MDKTVRLWHLS-SKTCLKIFS-HSDYDISLV-DRLMLRFAYGAF  626 (630)
Q Consensus       581 LaSgS-~DgtVrIWDl~-tg~~l~t~~-H~~~V~sVa-s~~~~~lAsgs~  626 (630)
                      |+.++ .|+.++||++. .+..+..+. |...+.+++ ++++..+++++.
T Consensus       187 l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~  236 (297)
T 2ojh_A          187 IYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSY  236 (297)
T ss_dssp             EEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEE
T ss_pred             EEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEc
Confidence            77666 59999999986 566667776 888888888 888888877654

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.76  E-value=8.2e-16  Score=160.10  Aligned_cols=211  Identities=8%  Similarity=-0.011  Sum_probs=136.9

Q ss_pred             eEeecCCCccEecccCCCCceeEEec-----C--------CccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEe
Q 006825          351 VEEGNKDSFDLNNNGSSGGGMKSKKK-----G--------SWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSAT  417 (630)
Q Consensus       351 laSgS~D~tvr~vWD~~tG~~~~~lk-----~--------gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~  417 (630)
                      +++...++++. +|++.+...+..+.     .        .+...+.+++|+|+|++++                     
T Consensus       113 ~~~~~~~~~v~-~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~---------------------  170 (361)
T 3scy_A          113 VTANYSGGSIT-VFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLL---------------------  170 (361)
T ss_dssp             EEEETTTTEEE-EEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEE---------------------
T ss_pred             EEEECCCCEEE-EEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEE---------------------
Confidence            44555688899 99987543332111     0        1233457789999988664                     


Q ss_pred             ecCCCeEEEecCCcEEEEEeCCCCc-------ccce-eeeeEecccCcCEEEEEEccCCCEEEEEe-CCCcEEEEECcCC
Q 006825          418 DDSQDVSFHGQERVRVRQYGKSCKD-------LTAL-YKCQEIQAHNGSIWSIKFSLDGRYLASAG-EDCVIHVWQVVES  488 (630)
Q Consensus       418 ~~s~d~l~Sgs~Dg~VriWd~~~~e-------l~~~-~~v~tL~gHt~~V~sVaFSpDG~~LASgS-~DgtIrVWDl~tg  488 (630)
                             ++...+..|++|++....       +... ........+...+..++|+|||++|+.++ .+++|++|++.++
T Consensus       171 -------~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g  243 (361)
T 3scy_A          171 -------ADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADG  243 (361)
T ss_dssp             -------EEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETT
T ss_pred             -------EEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCC
Confidence                   334456789999876432       2110 00112233455678999999999887777 6899999999876


Q ss_pred             ceeeeeecccccCcccceEEEEECCCCCEEEEeeCC--CeeeeecccccccccccccCccccccEEEeCC---CC--ceE
Q 006825          489 ERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLD--NHLEKKRRGRSINRKSLSLDHMVVPETVFALS---DK--PIC  561 (630)
Q Consensus       489 ~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~D--g~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdls---gk--~l~  561 (630)
                      .............+......++|+|+|++|+++..+  +.|                       .+|++.   ++  .+.
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i-----------------------~v~~~~~~~g~~~~~~  300 (361)
T 3scy_A          244 MLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGV-----------------------AIFKVDETNGTLTKVG  300 (361)
T ss_dssp             EEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEE-----------------------EEEEECTTTCCEEEEE
T ss_pred             ceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEE-----------------------EEEEEcCCCCcEEEee
Confidence            532211111123444556899999999988766554  677                       666652   33  344


Q ss_pred             EeccCCCCEEEEEEcCC-CeEEEEE-CCCcEEEE--eCCCCcEEEEEe--cCCceEEEE
Q 006825          562 SFQGHLDDVLDLSWSKS-QHLLSSS-MDKTVRLW--HLSSKTCLKIFS--HSDYDISLV  614 (630)
Q Consensus       562 tL~GHs~~V~sLafSPd-~~LaSgS-~DgtVrIW--Dl~tg~~l~t~~--H~~~V~sVa  614 (630)
                      .+.. ...+..++|+|+ ++|++++ .+++|.+|  |..++++.....  +...+.||+
T Consensus       301 ~~~~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~~~~p~~v~  358 (361)
T 3scy_A          301 YQLT-GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTDIKKDIKVDKPVCLK  358 (361)
T ss_dssp             EEEC-SSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEECSCCEECSSEEEEE
T ss_pred             EecC-CCCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEeecceeeeCCCCeEEE
Confidence            4444 456889999999 8788777 67999995  556787766543  556778875

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.75  E-value=6.8e-16  Score=156.94  Aligned_cols=215  Identities=10%  Similarity=0.064  Sum_probs=139.2

Q ss_pred             ceeEEEeec---ce-EeecCCCccEecccCC---CCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccccCCcce
Q 006825          341 IVQELMRRQ---NV-EEGNKDSFDLNNNGSS---GGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRS  413 (630)
Q Consensus       341 ~V~~Lafs~---~l-aSgS~D~tvr~vWD~~---tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~  413 (630)
                      .+..++|+|   .| +++..++++. +||+.   +++....+. + ...+.+++|+|+|++++.                
T Consensus        85 ~~~~~~~s~dg~~l~~~~~~~~~i~-~~d~~~~~~~~~~~~~~-~-~~~~~~~~~s~dg~~l~~----------------  145 (343)
T 1ri6_A           85 SLTHISTDHQGQFVFVGSYNAGNVS-VTRLEDGLPVGVVDVVE-G-LDGCHSANISPDNRTLWV----------------  145 (343)
T ss_dssp             CCSEEEECTTSSEEEEEETTTTEEE-EEEEETTEEEEEEEEEC-C-CTTBCCCEECTTSSEEEE----------------
T ss_pred             CCcEEEEcCCCCEEEEEecCCCeEE-EEECCCCcccccccccc-C-CCCceEEEECCCCCEEEE----------------
Confidence            567788888   35 4445588899 99994   444455544 3 345888999999986642                


Q ss_pred             EEEeecCCCeEEEecCCcEEEEEeCCC-Ccccceeeee--Eeccc-CcCEEEEEEccCCCEEEEE-eCCCcEEEEECcC-
Q 006825          414 SSATDDSQDVSFHGQERVRVRQYGKSC-KDLTALYKCQ--EIQAH-NGSIWSIKFSLDGRYLASA-GEDCVIHVWQVVE-  487 (630)
Q Consensus       414 Vsa~~~s~d~l~Sgs~Dg~VriWd~~~-~el~~~~~v~--tL~gH-t~~V~sVaFSpDG~~LASg-S~DgtIrVWDl~t-  487 (630)
                                  +...++.|++|++.. +++.   ...  .+..+ ...+..++|+|+|++|+.+ ..++.|++|++.. 
T Consensus       146 ------------~~~~~~~v~~~d~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~  210 (343)
T 1ri6_A          146 ------------PALKQDRICLFTVSDDGHLV---AQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDP  210 (343)
T ss_dssp             ------------EEGGGTEEEEEEECTTSCEE---EEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCT
T ss_pred             ------------ecCCCCEEEEEEecCCCcee---eecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCC
Confidence                        233577899999876 4332   111  23333 3478899999999977555 4899999999953 


Q ss_pred             -Ccee--eeeecccccCc--ccceEEEEECCCCCEEEE-eeCCCeeeeecccccccccccccCccccccEEEeCC--C--
Q 006825          488 -SERK--GELLEKQEDGH--LNMLLLANGSPEPTSLSP-KHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALS--D--  557 (630)
Q Consensus       488 -g~~~--~~l~~~~~~gh--~~~V~svafSpdg~~las-gs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdls--g--  557 (630)
                       +...  ..+. ....++  ...+..++|+|++++++. ...++.|                       .+|++.  +  
T Consensus       211 ~g~~~~~~~~~-~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i-----------------------~v~d~~~~~~~  266 (343)
T 1ri6_A          211 HGNIECVQTLD-MMPENFSDTRWAADIHITPDGRHLYACDRTASLI-----------------------TVFSVSEDGSV  266 (343)
T ss_dssp             TSCCEEEEEEE-CSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEE-----------------------EEEEECTTSCC
T ss_pred             CCcEEEEeecc-ccCccccccCCccceEECCCCCEEEEEecCCCEE-----------------------EEEEEcCCCCc
Confidence             3321  1111 001121  345678999999987774 4467888                       666653  2  


Q ss_pred             -CceEEeccCCCCEEEEEEcCC-CeEEEEE-CCCcEEEE--eCCCCcE--EEEEecCCceEEEE
Q 006825          558 -KPICSFQGHLDDVLDLSWSKS-QHLLSSS-MDKTVRLW--HLSSKTC--LKIFSHSDYDISLV  614 (630)
Q Consensus       558 -k~l~tL~GHs~~V~sLafSPd-~~LaSgS-~DgtVrIW--Dl~tg~~--l~t~~H~~~V~sVa  614 (630)
                       +.+..+..+.. +..++|+|+ ++|++++ .|+.|+||  |..+++.  +..+.......+++
T Consensus       267 ~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~g~~p~~i~  329 (343)
T 1ri6_A          267 LSKEGFQPTETQ-PRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLHEKGRYAVGQGPMWVV  329 (343)
T ss_dssp             EEEEEEEECSSS-CCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEEEEEEEEECSSSCCEEE
T ss_pred             eEEeeeecCCCc-cceEEECCCCCEEEEecCCCCeEEEEEEcCCCceeeEccccccCCCCeeEE
Confidence             23444554544 889999999 7777777 68999999  5556643  44444323344444

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.75  E-value=1.3e-16  Score=161.88  Aligned_cols=232  Identities=8%  Similarity=-0.033  Sum_probs=167.5

Q ss_pred             ceEeecCCCccEecccCCCCceeEEecCCccC-CEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEec
Q 006825          350 NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFK-SIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQ  428 (630)
Q Consensus       350 ~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~-~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs  428 (630)
                      .+++++.+++++ +||..+++.+.++..++.. .+..++|+|+|+++.                            ++..
T Consensus         3 ~~v~~~~~~~v~-~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~----------------------------v~~~   53 (337)
T 1pby_B            3 YILAPARPDKLV-VIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAY----------------------------ATVN   53 (337)
T ss_dssp             EEEEEETTTEEE-EEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEE----------------------------EEET
T ss_pred             EEEEcCCCCeEE-EEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEE----------------------------EEeC
Confidence            478999999999 9999999998888755543 478899999997664                            3445


Q ss_pred             CCcEEEEEeCCCCcccceeeeeEec-c----cCcCEEEEEEccCCCEEEEEe------------CCCcEEEEECcCCcee
Q 006825          429 ERVRVRQYGKSCKDLTALYKCQEIQ-A----HNGSIWSIKFSLDGRYLASAG------------EDCVIHVWQVVESERK  491 (630)
Q Consensus       429 ~Dg~VriWd~~~~el~~~~~v~tL~-g----Ht~~V~sVaFSpDG~~LASgS------------~DgtIrVWDl~tg~~~  491 (630)
                      .++.|++||..+++.     +..+. +    |...+..++|+|+|++|++++            .++.|.+||+.+++..
T Consensus        54 ~~~~v~~~d~~~~~~-----~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~  128 (337)
T 1pby_B           54 KSESLVKIDLVTGET-----LGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRR  128 (337)
T ss_dssp             TTTEEEEEETTTCCE-----EEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEE
T ss_pred             CCCeEEEEECCCCCe-----EeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEE
Confidence            577899999987653     22332 2    233677899999999999886            6899999999988776


Q ss_pred             eeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeeccccccccc-----------ccccCcccc------------
Q 006825          492 GELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRK-----------SLSLDHMVV------------  548 (630)
Q Consensus       492 ~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~-----------s~s~d~~i~------------  548 (630)
                      ..+.    .  ...+..++|+|++++++++  ++.|.+|+........           .++++....            
T Consensus       129 ~~~~----~--~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~  200 (337)
T 1pby_B          129 KAFE----A--PRQITMLAWARDGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMAT  200 (337)
T ss_dssp             EEEE----C--CSSCCCEEECTTSSCEEEE--SSSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEE
T ss_pred             EEEe----C--CCCcceeEECCCCCEEEEe--CCeEEEEECCCCcEeeeeeccccCCCceeCCCccEEeeeccCCCceee
Confidence            6542    1  2346678899999988777  5778888765422211           111221110            


Q ss_pred             -------------------ccEEEeC-CCCce-EEeccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCCCcEEEEEec
Q 006825          549 -------------------PETVFAL-SDKPI-CSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFSH  606 (630)
Q Consensus       549 -------------------~~~Vwdl-sgk~l-~tL~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg~~l~t~~H  606 (630)
                                         .-.+|++ +++.. ..+..|...+..++|+|+ ++|+++  ++.|++||+.+++.+..+..
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~  278 (337)
T 1pby_B          201 PFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPL  278 (337)
T ss_dssp             EEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEEC
T ss_pred             eeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecC
Confidence                               0146676 44432 334567778899999999 788777  79999999999999998885


Q ss_pred             CCceEEEE-cCCCcEEEEec
Q 006825          607 SDYDISLV-DRLMLRFAYGA  625 (630)
Q Consensus       607 ~~~V~sVa-s~~~~~lAsgs  625 (630)
                      ...+.+++ ++++..+++++
T Consensus       279 ~~~~~~~~~s~dg~~l~~~~  298 (337)
T 1pby_B          279 PHSYYSVNVSTDGSTVWLGG  298 (337)
T ss_dssp             SSCCCEEEECTTSCEEEEES
T ss_pred             CCceeeEEECCCCCEEEEEc
Confidence            56678888 88887666654

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.75  E-value=9.2e-16  Score=156.71  Aligned_cols=245  Identities=9%  Similarity=-0.039  Sum_probs=165.3

Q ss_pred             eeEEEEcCCCceEeeecceeeecCccceeEEEeec---ceE-eecCCCccEecccCCCCce-eEEecCCccCCEEEEEEc
Q 006825          315 WKKVKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQ---NVE-EGNKDSFDLNNNGSSGGGM-KSKKKGSWFKSIRTVASS  389 (630)
Q Consensus       315 ~~~l~dv~TG~~lt~eef~~l~GHs~~V~~Lafs~---~la-SgS~D~tvr~vWD~~tG~~-~~~lk~gH~~~V~sVAfS  389 (630)
                      ...+||..+|+.+     ..+..+...+ .++|+|   .++ ++..++++. +||..+++. ...+. .+...+.+++|+
T Consensus        21 ~v~~~d~~~~~~~-----~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~-~~d~~~~~~~~~~~~-~~~~~~~~~~~s   92 (331)
T 3u4y_A           21 RISFFSTDTLEIL-----NQITLGYDFV-DTAITSDCSNVVVTSDFCQTLV-QIETQLEPPKVVAIQ-EGQSSMADVDIT   92 (331)
T ss_dssp             EEEEEETTTCCEE-----EEEECCCCEE-EEEECSSSCEEEEEESTTCEEE-EEECSSSSCEEEEEE-ECSSCCCCEEEC
T ss_pred             eEEEEeCccccee-----eeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEE-EEECCCCceeEEecc-cCCCCccceEEC
Confidence            4668888888887     3434444455 899998   344 444588999 999999998 66666 666666669999


Q ss_pred             CCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCC
Q 006825          390 VTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGR  469 (630)
Q Consensus       390 pdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~  469 (630)
                      |+|++++.+..+                          .....|++||..+++.     ++.+..+ ....+++|+|||+
T Consensus        93 ~dg~~l~~~~~~--------------------------~~~~~i~v~d~~~~~~-----~~~~~~~-~~~~~~~~spdg~  140 (331)
T 3u4y_A           93 PDDQFAVTVTGL--------------------------NHPFNMQSYSFLKNKF-----ISTIPIP-YDAVGIAISPNGN  140 (331)
T ss_dssp             TTSSEEEECCCS--------------------------SSSCEEEEEETTTTEE-----EEEEECC-TTEEEEEECTTSS
T ss_pred             CCCCEEEEecCC--------------------------CCcccEEEEECCCCCe-----EEEEECC-CCccceEECCCCC
Confidence            999988632111                          0122899999987653     4445443 4568999999998


Q ss_pred             EEE-EEeCCCc-EEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEE-EeeCCCeeeeecccccccccccccCcc
Q 006825          470 YLA-SAGEDCV-IHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLS-PKHLDNHLEKKRRGRSINRKSLSLDHM  546 (630)
Q Consensus       470 ~LA-SgS~Dgt-IrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~la-sgs~Dg~I~i~~~~~~~~~~s~s~d~~  546 (630)
                      +|+ +...++. |++|++.....+.... ............++|+|++++++ ++..++.|                   
T Consensus       141 ~l~~~~~~~~~~i~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v-------------------  200 (331)
T 3u4y_A          141 GLILIDRSSANTVRRFKIDADGVLFDTG-QEFISGGTRPFNITFTPDGNFAFVANLIGNSI-------------------  200 (331)
T ss_dssp             CEEEEEETTTTEEEEEEECTTCCEEEEE-EEEECSSSSEEEEEECTTSSEEEEEETTTTEE-------------------
T ss_pred             EEEEEecCCCceEEEEEECCCCcEeecC-CccccCCCCccceEECCCCCEEEEEeCCCCeE-------------------
Confidence            554 5566688 9999987544332211 00112234578999999998554 44467778                   


Q ss_pred             ccccEEEeC-CCCc---eEEeccCCCCEEEEEEcCC-CeEEE-EECCCcEEEEeCCCCcE--EEEEe-c----CCc---e
Q 006825          547 VVPETVFAL-SDKP---ICSFQGHLDDVLDLSWSKS-QHLLS-SSMDKTVRLWHLSSKTC--LKIFS-H----SDY---D  610 (630)
Q Consensus       547 i~~~~Vwdl-sgk~---l~tL~GHs~~V~sLafSPd-~~LaS-gS~DgtVrIWDl~tg~~--l~t~~-H----~~~---V  610 (630)
                          .+|++ +++.   +..+..+ ..+..++|+|+ ++|+. ...++.|.+||+.+++.  +..+. +    ...   +
T Consensus       201 ----~v~d~~~~~~~~~~~~~~~~-~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (331)
T 3u4y_A          201 ----GILETQNPENITLLNAVGTN-NLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGA  275 (331)
T ss_dssp             ----EEEECSSTTSCEEEEEEECS-SCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTC
T ss_pred             ----EEEECCCCcccceeeeccCC-CCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccc
Confidence                77877 5666   6667644 66789999999 75654 45688999999999987  55554 2    222   2


Q ss_pred             EEEE-cCCCcEEEEe
Q 006825          611 ISLV-DRLMLRFAYG  624 (630)
Q Consensus       611 ~sVa-s~~~~~lAsg  624 (630)
                      ..++ ++++..+..+
T Consensus       276 ~~~~~spdg~~l~v~  290 (331)
T 3u4y_A          276 NQMALNKTETKLFIS  290 (331)
T ss_dssp             CCEEECTTSSEEEEE
T ss_pred             cceEECCCCCEEEEe
Confidence            3356 7777766443

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.74  E-value=2e-17  Score=184.42  Aligned_cols=241  Identities=10%  Similarity=-0.015  Sum_probs=172.4

Q ss_pred             ccceeEEEeec---ceEeecC-CCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecC---CC-------C-
Q 006825          339 SPIVQELMRRQ---NVEEGNK-DSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSD---ER-------D-  403 (630)
Q Consensus       339 s~~V~~Lafs~---~laSgS~-D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~---D~-------d-  403 (630)
                      ...|..++|+|   .||.++. |++++ ||++.+|+.. ++..+|...|.+++|||| +.+++++.   +.       + 
T Consensus        21 ~~~~~~~~~~~DG~~la~~s~~~g~~~-lw~~~~g~~~-~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~   97 (582)
T 3o4h_A           21 AVEKYSLQGVVDGDKLLVVGFSEGSVN-AYLYDGGETV-KLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNT   97 (582)
T ss_dssp             HSCEEEEEEEETTTEEEEEEEETTEEE-EEEEETTEEE-ECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEET
T ss_pred             ccchheeecCCCCCeEEEEEccCCcee-EEEEcCCCcE-eeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEec
Confidence            44699999998   7888887 99999 9999666554 455245478999999999 77776654   11       0 


Q ss_pred             --Ccc---c-cCCcceEEEeecCCCe-EEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeC
Q 006825          404 --TSS---E-KGGRRSSSATDDSQDV-SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGE  476 (630)
Q Consensus       404 --t~s---~-~gh~~~Vsa~~~s~d~-l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~  476 (630)
                        .+.   + ..+...+.+..+..+. +++...+..+.+|++.+++.      ..+..+..  .+++|+|||++||+++.
T Consensus        98 ~~~g~~~~l~~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~------~~l~~~~~--~~~~~spDG~~la~~~~  169 (582)
T 3o4h_A           98 SRPGEEQRLEAVKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGL------RELARLPG--FGFVSDIRGDLIAGLGF  169 (582)
T ss_dssp             TSTTCCEECTTSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEE------EEEEEESS--CEEEEEEETTEEEEEEE
T ss_pred             cCCCccccccCCCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcE------EEeecCCC--ceEEECCCCCEEEEEEE
Confidence              111   1 1111223344444433 44444444455999877643      23333433  89999999999999888


Q ss_pred             C----CcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCC--eeeeecccccccccccccCcccccc
Q 006825          477 D----CVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDN--HLEKKRRGRSINRKSLSLDHMVVPE  550 (630)
Q Consensus       477 D----gtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg--~I~i~~~~~~~~~~s~s~d~~i~~~  550 (630)
                      |    ++|++||+.+++.. .+     .+|...+..++|+|||+.|+++..++  .|                       
T Consensus       170 ~~~~~~~i~~~d~~~g~~~-~l-----~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i-----------------------  220 (582)
T 3o4h_A          170 FGGGRVSLFTSNLSSGGLR-VF-----DSGEGSFSSASISPGMKVTAGLETAREARL-----------------------  220 (582)
T ss_dssp             EETTEEEEEEEETTTCCCE-EE-----CCSSCEEEEEEECTTSCEEEEEECSSCEEE-----------------------
T ss_pred             cCCCCeEEEEEcCCCCCce-Ee-----ecCCCccccceECCCCCEEEEccCCCeeEE-----------------------
Confidence            8    88999999888754 32     67778889999999999999877777  55                       


Q ss_pred             EEEeC-CCCceEEeccCCCCEEEEE--------EcCC-CeEEEEECCCcEEEEeCCCCcEEEEEecCCceEEEE-cCCCc
Q 006825          551 TVFAL-SDKPICSFQGHLDDVLDLS--------WSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYDISLV-DRLML  619 (630)
Q Consensus       551 ~Vwdl-sgk~l~tL~GHs~~V~sLa--------fSPd-~~LaSgS~DgtVrIWDl~tg~~l~t~~H~~~V~sVa-s~~~~  619 (630)
                      .+|++ +++.. .+.+|...|..++        |+|| .++++++.|++++||++  |+++.  .+...|.+++ + ++.
T Consensus       221 ~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~--~~~~~v~~~~~s-dg~  294 (582)
T 3o4h_A          221 VTVDPRDGSVE-DLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--GERVE--APQGNHGRVVLW-RGK  294 (582)
T ss_dssp             EEECTTTCCEE-ECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEEC--CCSSEEEEEEEE-TTE
T ss_pred             EEEcCCCCcEE-EccCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--CCeec--cCCCceEEEEec-CCE
Confidence            77888 44554 7788888888777        9999 88899999999999999  77665  3446777777 6 666


Q ss_pred             EEEEec
Q 006825          620 RFAYGA  625 (630)
Q Consensus       620 ~lAsgs  625 (630)
                      .+++.+
T Consensus       295 ~l~~~s  300 (582)
T 3o4h_A          295 LVTSHT  300 (582)
T ss_dssp             EEEEEE
T ss_pred             EEEEEc
Confidence            665544

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.74  E-value=6.1e-16  Score=156.90  Aligned_cols=253  Identities=11%  Similarity=-0.032  Sum_probs=157.3

Q ss_pred             eeEEEEcCCCceEeeecceeee-cCcc-ceeEEEeec----ceEeecCCCccEecccCCCCceeEEecCCc----cCCEE
Q 006825          315 WKKVKEVGTGRQLTIEEFEMCV-GHSP-IVQELMRRQ----NVEEGNKDSFDLNNNGSSGGGMKSKKKGSW----FKSIR  384 (630)
Q Consensus       315 ~~~l~dv~TG~~lt~eef~~l~-GHs~-~V~~Lafs~----~laSgS~D~tvr~vWD~~tG~~~~~lk~gH----~~~V~  384 (630)
                      ...+||+.+|+.+     .++. ++.. .+..++|+|    .+++++.++.+. +||+.+++.+.++..++    ...+.
T Consensus        12 ~v~~~d~~~~~~~-----~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~-~~d~~~~~~~~~~~~~~~~~~~~~~~   85 (337)
T 1pby_B           12 KLVVIDTEKMAVD-----KVITIADAGPTPMVPMVAPGGRIAYATVNKSESLV-KIDLVTGETLGRIDLSTPEERVKSLF   85 (337)
T ss_dssp             EEEEEETTTTEEE-----EEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEE-EEETTTCCEEEEEECCBTTEEEECTT
T ss_pred             eEEEEECCCCcEE-----EEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEE-EEECCCCCeEeeEEcCCccccccccc
Confidence            3668888888877     3333 3322 378899988    356777789999 99999999888776443    23677


Q ss_pred             EEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEE
Q 006825          385 TVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKF  464 (630)
Q Consensus       385 sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaF  464 (630)
                      .++|+|+|++++.+....               ...+....  ..++.|++||..+++.     +..+.. ...+.+++|
T Consensus        86 ~~~~s~dg~~l~~~~~~~---------------~~~~~~~~--~~~~~i~v~d~~~~~~-----~~~~~~-~~~~~~~~~  142 (337)
T 1pby_B           86 GAALSPDGKTLAIYESPV---------------RLELTHFE--VQPTRVALYDAETLSR-----RKAFEA-PRQITMLAW  142 (337)
T ss_dssp             CEEECTTSSEEEEEEEEE---------------EECSSCEE--ECCCEEEEEETTTTEE-----EEEEEC-CSSCCCEEE
T ss_pred             ceEECCCCCEEEEEeccc---------------cccccccc--ccCceEEEEECCCCcE-----EEEEeC-CCCcceeEE
Confidence            899999998876432100               00000000  0467899999976642     334443 345788999


Q ss_pred             ccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCC-C------------------
Q 006825          465 SLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLD-N------------------  525 (630)
Q Consensus       465 SpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~D-g------------------  525 (630)
                      +|||++|+++  ++.|++||+.+++....+...   .+...   +.|+|++..++..... +                  
T Consensus       143 s~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~---~~~~~---~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  214 (337)
T 1pby_B          143 ARDGSKLYGL--GRDLHVMDPEAGTLVEDKPIQ---SWEAE---TYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADP  214 (337)
T ss_dssp             CTTSSCEEEE--SSSEEEEETTTTEEEEEECST---TTTTT---TBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSG
T ss_pred             CCCCCEEEEe--CCeEEEEECCCCcEeeeeecc---ccCCC---ceeCCCccEEeeeccCCCceeeeeeccccccccccc
Confidence            9999988888  689999999988766554211   00011   1344444433222111 1                  


Q ss_pred             -----eeeeeccccccc-------------ccccccCcccc-----ccEEEeC-CCCceEEeccCCCCEEEEEEcCC-Ce
Q 006825          526 -----HLEKKRRGRSIN-------------RKSLSLDHMVV-----PETVFAL-SDKPICSFQGHLDDVLDLSWSKS-QH  580 (630)
Q Consensus       526 -----~I~i~~~~~~~~-------------~~s~s~d~~i~-----~~~Vwdl-sgk~l~tL~GHs~~V~sLafSPd-~~  580 (630)
                           .|.+++......             ...++.+....     .-.+|++ +++.+..+..+ ..+.+++|+|+ ++
T Consensus       215 ~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~  293 (337)
T 1pby_B          215 TAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGAYNVLESFDLEKNASIKRVPLP-HSYYSVNVSTDGST  293 (337)
T ss_dssp             GGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEEESEEEEEETTTTEEEEEEECS-SCCCEEEECTTSCE
T ss_pred             cccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEeCCeEEEEECCCCcCcceecCC-CceeeEEECCCCCE
Confidence                 112222211000             01111221110     0177887 56666666543 46789999999 88


Q ss_pred             EEEEECCCcEEEEeCCCCcEEEEEe
Q 006825          581 LLSSSMDKTVRLWHLSSKTCLKIFS  605 (630)
Q Consensus       581 LaSgS~DgtVrIWDl~tg~~l~t~~  605 (630)
                      |++++.|+.|++||+.+++.+..+.
T Consensus       294 l~~~~~~~~i~v~d~~~~~~~~~~~  318 (337)
T 1pby_B          294 VWLGGALGDLAAYDAETLEKKGQVD  318 (337)
T ss_dssp             EEEESBSSEEEEEETTTCCEEEEEE
T ss_pred             EEEEcCCCcEEEEECcCCcEEEEEE
Confidence            8888999999999999999999887

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.74  E-value=1.3e-15  Score=154.87  Aligned_cols=249  Identities=11%  Similarity=0.009  Sum_probs=162.9

Q ss_pred             eEEEEcC-CCceEeeecceeeecCccceeEEEeec---ceEeecCC-CccEecccCC--CCcee--EEecCCccCCEEEE
Q 006825          316 KKVKEVG-TGRQLTIEEFEMCVGHSPIVQELMRRQ---NVEEGNKD-SFDLNNNGSS--GGGMK--SKKKGSWFKSIRTV  386 (630)
Q Consensus       316 ~~l~dv~-TG~~lt~eef~~l~GHs~~V~~Lafs~---~laSgS~D-~tvr~vWD~~--tG~~~--~~lk~gH~~~V~sV  386 (630)
                      ..+|++. +|+..   . .....|...+..++|+|   .|++++.+ ++++ +|++.  +|+..  ..+. .+. .+..+
T Consensus        17 v~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~-~~~~~~~~~~~~~~~~~~-~~~-~~~~~   89 (343)
T 1ri6_A           17 IHVWNLNHEGALT---L-TQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVL-AYRIAPDDGALTFAAESA-LPG-SLTHI   89 (343)
T ss_dssp             EEEEEECTTSCEE---E-EEEEECSSCCCCEEECTTSSEEEEEETTTTEEE-EEEECTTTCCEEEEEEEE-CSS-CCSEE
T ss_pred             EEEEEECCCCcEE---E-eeeEecCCCCceEEECCCCCEEEEeecCCCeEE-EEEecCCCCceeeccccc-cCC-CCcEE
Confidence            4577764 44322   1 12245677889999998   57777776 8999 99987  66533  3444 333 78899


Q ss_pred             EEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEcc
Q 006825          387 ASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSL  466 (630)
Q Consensus       387 AfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSp  466 (630)
                      +|+|+|++++                            +++..++.|++|++..+.  ....++.+..+. .+.+++|+|
T Consensus        90 ~~s~dg~~l~----------------------------~~~~~~~~i~~~d~~~~~--~~~~~~~~~~~~-~~~~~~~s~  138 (343)
T 1ri6_A           90 STDHQGQFVF----------------------------VGSYNAGNVSVTRLEDGL--PVGVVDVVEGLD-GCHSANISP  138 (343)
T ss_dssp             EECTTSSEEE----------------------------EEETTTTEEEEEEEETTE--EEEEEEEECCCT-TBCCCEECT
T ss_pred             EEcCCCCEEE----------------------------EEecCCCeEEEEECCCCc--cccccccccCCC-CceEEEECC
Confidence            9999998764                            333457789999984221  122344555443 589999999


Q ss_pred             CCCEEEEEe-CCCcEEEEECcC-CceeeeeecccccCcccceEEEEECCCCCEEEEe-eCCCeeeeeccccccccccccc
Q 006825          467 DGRYLASAG-EDCVIHVWQVVE-SERKGELLEKQEDGHLNMLLLANGSPEPTSLSPK-HLDNHLEKKRRGRSINRKSLSL  543 (630)
Q Consensus       467 DG~~LASgS-~DgtIrVWDl~t-g~~~~~l~~~~~~gh~~~V~svafSpdg~~lasg-s~Dg~I~i~~~~~~~~~~s~s~  543 (630)
                      +|++|++++ .|+.|++||+.+ ++................+..++|+|++++++.+ ..++.|                
T Consensus       139 dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i----------------  202 (343)
T 1ri6_A          139 DNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSV----------------  202 (343)
T ss_dssp             TSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEE----------------
T ss_pred             CCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEE----------------
Confidence            999888887 899999999987 5432211000012223467789999999976554 477888                


Q ss_pred             CccccccEEEeCC---CCc--eEEec----cC--CCCEEEEEEcCC-CeEE-EEECCCcEEEEeCC--C--CcEEEEEec
Q 006825          544 DHMVVPETVFALS---DKP--ICSFQ----GH--LDDVLDLSWSKS-QHLL-SSSMDKTVRLWHLS--S--KTCLKIFSH  606 (630)
Q Consensus       544 d~~i~~~~Vwdls---gk~--l~tL~----GH--s~~V~sLafSPd-~~La-SgS~DgtVrIWDl~--t--g~~l~t~~H  606 (630)
                             .+|++.   ++.  +..+.    +|  ...+..++|+|+ ++|+ ++..|+.|++||+.  +  .+.+..+..
T Consensus       203 -------~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~  275 (343)
T 1ri6_A          203 -------DVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPT  275 (343)
T ss_dssp             -------EEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEEC
T ss_pred             -------EEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecC
Confidence                   444441   111  11111    11  346778999999 6666 55689999999998  3  345556663


Q ss_pred             CCceEEEE-cCCCcEEEEec
Q 006825          607 SDYDISLV-DRLMLRFAYGA  625 (630)
Q Consensus       607 ~~~V~sVa-s~~~~~lAsgs  625 (630)
                      ...+.+++ ++++..++++.
T Consensus       276 ~~~~~~~~~s~dg~~l~~~~  295 (343)
T 1ri6_A          276 ETQPRGFNVDHSGKYLIAAG  295 (343)
T ss_dssp             SSSCCCEEECTTSSEEEEEC
T ss_pred             CCccceEEECCCCCEEEEec
Confidence            33488888 88887666654

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.74  E-value=4.5e-16  Score=186.39  Aligned_cols=227  Identities=10%  Similarity=0.038  Sum_probs=168.7

Q ss_pred             CccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCC-------C--C---ccccCCcceEEEeecCCCe--
Q 006825          358 SFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDER-------D--T---SSEKGGRRSSSATDDSQDV--  423 (630)
Q Consensus       358 ~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~-------d--t---~s~~gh~~~Vsa~~~s~d~--  423 (630)
                      .+.+ +|....+....++. +|...|.+++|+++ .++.+++.+.       +  .   ..+..|.. +....+++++  
T Consensus       183 ~~~~-lw~~~~~~~~~~l~-~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~~-~~~~~~SpDG~~  258 (1045)
T 1k32_A          183 TRGK-IWIEVNSGAFKKIV-DMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDLRKHTSFTD-YYPRHLNTDGRR  258 (1045)
T ss_dssp             TCCE-EEEEEETTEEEEEE-CCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSCSCEECCCCCS-SCEEEEEESSSC
T ss_pred             CcCC-EEEECCCCCeEECc-CCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCCcceEecCCCC-cceeeEcCCCCE
Confidence            3445 66543334455565 89999999999988 5555555443       1  1   11333332 3344666666  


Q ss_pred             EEEecCCcEEEEEeCCCCcccceeeeeEecc-----------cCcCEEEEEEc-cCCCEEEEEeCCCcEEEEECcCCcee
Q 006825          424 SFHGQERVRVRQYGKSCKDLTALYKCQEIQA-----------HNGSIWSIKFS-LDGRYLASAGEDCVIHVWQVVESERK  491 (630)
Q Consensus       424 l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~g-----------Ht~~V~sVaFS-pDG~~LASgS~DgtIrVWDl~tg~~~  491 (630)
                      ++.+ .++.|++|+.....+      ..+.+           |...|.+++|+ |||++||+++ ++.|++|++.++...
T Consensus       259 la~~-~~~~i~~~d~~~~~l------~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~  330 (1045)
T 1k32_A          259 ILFS-KGGSIYIFNPDTEKI------EKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVL  330 (1045)
T ss_dssp             EEEE-ETTEEEEECTTTCCE------EECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEE
T ss_pred             EEEE-eCCEEEEecCCceEe------eeeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceE
Confidence            4444 588999999844432      23444           55679999999 9999999988 789999999877644


Q ss_pred             eeeecccccCccc-ceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccE-EEeCCCCceEEeccCCCC
Q 006825          492 GELLEKQEDGHLN-MLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPET-VFALSDKPICSFQGHLDD  569 (630)
Q Consensus       492 ~~l~~~~~~gh~~-~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~-Vwdlsgk~l~tL~GHs~~  569 (630)
                      . +     ..|.. .+..++|+ +|+.++.++.+..+                       . +|++.+..+..+.+|...
T Consensus       331 ~-~-----~~~~~~~~~~~~~s-dg~~l~~~s~~~~l-----------------------~~~~d~~~~~~~~l~~~~~~  380 (1045)
T 1k32_A          331 K-V-----PEPLRIRYVRRGGD-TKVAFIHGTREGDF-----------------------LGIYDYRTGKAEKFEENLGN  380 (1045)
T ss_dssp             E-C-----SCCSCEEEEEECSS-SEEEEEEEETTEEE-----------------------EEEEETTTCCEEECCCCCCS
T ss_pred             E-c-----cCCCcceEEeeeEc-CCCeEEEEECCCce-----------------------EEEEECCCCCceEecCCccc
Confidence            3 2     45666 78999999 99999988776555                       5 778766666667788899


Q ss_pred             EEEEEEcCC-CeEEEEECCCcEEEEeCCCCcEEEEEe-cCCceEEEE-cCCCcEEEEecc
Q 006825          570 VLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYDISLV-DRLMLRFAYGAF  626 (630)
Q Consensus       570 V~sLafSPd-~~LaSgS~DgtVrIWDl~tg~~l~t~~-H~~~V~sVa-s~~~~~lAsgs~  626 (630)
                      +..++|+|+ ++|++++.|++|++||+.++++...+. |...|.+++ +|++.++++++.
T Consensus       381 ~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~  440 (1045)
T 1k32_A          381 VFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFP  440 (1045)
T ss_dssp             EEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEE
T ss_pred             eeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEec
Confidence            999999999 999999999999999999999988885 999999999 999998887754

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.73  E-value=7.9e-16  Score=157.18  Aligned_cols=211  Identities=7%  Similarity=0.004  Sum_probs=156.1

Q ss_pred             ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecC
Q 006825          350 NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQE  429 (630)
Q Consensus       350 ~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~  429 (630)
                      .+++.+.+++++ +||..+|+.+..+. .+...+ .++|+|+|+++.                            ++...
T Consensus        12 ~~v~~~~~~~v~-~~d~~~~~~~~~~~-~~~~~~-~~~~s~dg~~l~----------------------------~~~~~   60 (331)
T 3u4y_A           12 GIVVEQHLRRIS-FFSTDTLEILNQIT-LGYDFV-DTAITSDCSNVV----------------------------VTSDF   60 (331)
T ss_dssp             EEEEEGGGTEEE-EEETTTCCEEEEEE-CCCCEE-EEEECSSSCEEE----------------------------EEEST
T ss_pred             EEEEecCCCeEE-EEeCcccceeeeEE-ccCCcc-eEEEcCCCCEEE----------------------------EEeCC
Confidence            378889999999 99999999988887 566667 999999998664                            33344


Q ss_pred             CcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCC---cEEEEECcCCceeeeeecccccCcccce
Q 006825          430 RVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDC---VIHVWQVVESERKGELLEKQEDGHLNML  506 (630)
Q Consensus       430 Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~Dg---tIrVWDl~tg~~~~~l~~~~~~gh~~~V  506 (630)
                      +++|++||..++++    ....+..+..++.+++|+|+|++|+++..++   .|++||+.+++.+..+.      .....
T Consensus        61 ~~~i~~~d~~~~~~----~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~------~~~~~  130 (331)
T 3u4y_A           61 CQTLVQIETQLEPP----KVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIP------IPYDA  130 (331)
T ss_dssp             TCEEEEEECSSSSC----EEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEE------CCTTE
T ss_pred             CCeEEEEECCCCce----eEEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEE------CCCCc
Confidence            67899999987753    1456677777777799999999999555553   89999999988776642      22345


Q ss_pred             EEEEECCCCCEEEE-eeCCCe-eeeecccccccccccccCccccccEEEeCC--CCce---EEeccCCCCEEEEEEcCC-
Q 006825          507 LLANGSPEPTSLSP-KHLDNH-LEKKRRGRSINRKSLSLDHMVVPETVFALS--DKPI---CSFQGHLDDVLDLSWSKS-  578 (630)
Q Consensus       507 ~svafSpdg~~las-gs~Dg~-I~i~~~~~~~~~~s~s~d~~i~~~~Vwdls--gk~l---~tL~GHs~~V~sLafSPd-  578 (630)
                      ..++|+|+|+++++ ...++. |                       .+|++.  +...   .....+...+..++|+|+ 
T Consensus       131 ~~~~~spdg~~l~~~~~~~~~~i-----------------------~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg  187 (331)
T 3u4y_A          131 VGIAISPNGNGLILIDRSSANTV-----------------------RRFKIDADGVLFDTGQEFISGGTRPFNITFTPDG  187 (331)
T ss_dssp             EEEEECTTSSCEEEEEETTTTEE-----------------------EEEEECTTCCEEEEEEEEECSSSSEEEEEECTTS
T ss_pred             cceEECCCCCEEEEEecCCCceE-----------------------EEEEECCCCcEeecCCccccCCCCccceEECCCC
Confidence            89999999985544 455566 7                       444442  1111   111233456899999999 


Q ss_pred             CeE-EEEECCCcEEEEeCCCCcE---EEEEecCCceEEEE-cCCCcEEEEe
Q 006825          579 QHL-LSSSMDKTVRLWHLSSKTC---LKIFSHSDYDISLV-DRLMLRFAYG  624 (630)
Q Consensus       579 ~~L-aSgS~DgtVrIWDl~tg~~---l~t~~H~~~V~sVa-s~~~~~lAsg  624 (630)
                      ++| +++..+++|++||+.+++.   +..+.+...+..++ +|++..+...
T Consensus       188 ~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~  238 (331)
T 3u4y_A          188 NFAFVANLIGNSIGILETQNPENITLLNAVGTNNLPGTIVVSRDGSTVYVL  238 (331)
T ss_dssp             SEEEEEETTTTEEEEEECSSTTSCEEEEEEECSSCCCCEEECTTSSEEEEE
T ss_pred             CEEEEEeCCCCeEEEEECCCCcccceeeeccCCCCCceEEECCCCCEEEEE
Confidence            655 5555799999999999998   88888667778888 8888865544

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.73  E-value=1.8e-15  Score=156.36  Aligned_cols=251  Identities=10%  Similarity=-0.030  Sum_probs=165.2

Q ss_pred             CceeEEEEcCCCceEeeecceeeecCccceeEEEeec--ceEeecC---CCccEecccCCCCce--eEEecCCccCCEEE
Q 006825          313 GTWKKVKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQ--NVEEGNK---DSFDLNNNGSSGGGM--KSKKKGSWFKSIRT  385 (630)
Q Consensus       313 g~~~~l~dv~TG~~lt~eef~~l~GHs~~V~~Lafs~--~laSgS~---D~tvr~vWD~~tG~~--~~~lk~gH~~~V~s  385 (630)
                      +.....+|..+|+...+    ...++...+..|+|+|  .|+.++.   ++.+. +|++.+|+.  +..+. .|...+..
T Consensus        17 ~i~v~~~d~~tg~~~~~----~~~~~~~~p~~~a~spdg~l~~~~~~~~~~~v~-~~~~~~g~~~~~~~~~-~~~~~p~~   90 (347)
T 3hfq_A           17 GIYQGTLDTTAKTLTND----GLLAATQNPTYLALSAKDCLYSVDKEDDEGGIA-AWQIDGQTAHKLNTVV-APGTPPAY   90 (347)
T ss_dssp             EEEEEEEETTTTEEEEE----EEEEECSCCCCEEECTTCEEEEEEEETTEEEEE-EEEEETTEEEEEEEEE-EESCCCSE
T ss_pred             CEEEEEEcCCCCeEEEe----eeeeccCCcceEEEccCCeEEEEEecCCCceEE-EEEecCCcEEEeeeee-cCCCCCEE
Confidence            34445556667765521    2344556778899998  3444443   68999 999988763  33434 67888899


Q ss_pred             EEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCC-CcccceeeeeEecc---------c
Q 006825          386 VASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSC-KDLTALYKCQEIQA---------H  455 (630)
Q Consensus       386 VAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~-~el~~~~~v~tL~g---------H  455 (630)
                      ++|+|||++++.+                            ...+++|++|++.. +.+.   .+..+..         +
T Consensus        91 ~a~spdg~~l~~~----------------------------~~~~~~v~v~~~~~~g~~~---~~~~~~~~~~~p~~~~~  139 (347)
T 3hfq_A           91 VAVDEARQLVYSA----------------------------NYHKGTAEVMKIAADGALT---LTDTVQHSGHGPRPEQD  139 (347)
T ss_dssp             EEEETTTTEEEEE----------------------------ETTTTEEEEEEECTTSCEE---EEEEEECCCCCSSTTCS
T ss_pred             EEECCCCCEEEEE----------------------------eCCCCEEEEEEeCCCCCee---ecceeecCCCCCCcccc
Confidence            9999999877532                            23567899999842 2221   2222221         2


Q ss_pred             CcCEEEEEEccCCCEEEEEeCCCcEEEEECc-CCceeeeeecccccCcccceEEEEECCCCCEEEE-eeCCCeeeeeccc
Q 006825          456 NGSIWSIKFSLDGRYLASAGEDCVIHVWQVV-ESERKGELLEKQEDGHLNMLLLANGSPEPTSLSP-KHLDNHLEKKRRG  533 (630)
Q Consensus       456 t~~V~sVaFSpDG~~LASgS~DgtIrVWDl~-tg~~~~~l~~~~~~gh~~~V~svafSpdg~~las-gs~Dg~I~i~~~~  533 (630)
                      ...+.+++|+|||+++++...++.|++|++. ++..... ... ..........++|+|+|++++. ...++.|      
T Consensus       140 ~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~-~~~-~~~~g~~p~~~~~spdg~~l~v~~~~~~~v------  211 (347)
T 3hfq_A          140 GSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQ-SVL-TMEAGFGPRHLVFSPDGQYAFLAGELSSQI------  211 (347)
T ss_dssp             SCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEE-EEE-ECCTTCCEEEEEECTTSSEEEEEETTTTEE------
T ss_pred             CCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEe-eeE-EcCCCCCCceEEECCCCCEEEEEeCCCCEE------
Confidence            3358999999999977777788999999998 4432211 100 1112235678999999996555 5566777      


Q ss_pred             ccccccccccCccccccEEEeCC---CCc--eEEeccCC------CCEEEEEEcCC-CeE-EEEECCCcEEEEeCCC---
Q 006825          534 RSINRKSLSLDHMVVPETVFALS---DKP--ICSFQGHL------DDVLDLSWSKS-QHL-LSSSMDKTVRLWHLSS---  597 (630)
Q Consensus       534 ~~~~~~s~s~d~~i~~~~Vwdls---gk~--l~tL~GHs------~~V~sLafSPd-~~L-aSgS~DgtVrIWDl~t---  597 (630)
                                       .+|++.   ++.  +..+..+.      ..+..++|+|+ ++| ++...+++|++|++..   
T Consensus       212 -----------------~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~  274 (347)
T 3hfq_A          212 -----------------ASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGH  274 (347)
T ss_dssp             -----------------EEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGC
T ss_pred             -----------------EEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCc
Confidence                             444442   221  22222222      35889999999 766 6777899999999973   


Q ss_pred             CcEEEEEe-cCCceEEEE-cCCCcEEEEec
Q 006825          598 KTCLKIFS-HSDYDISLV-DRLMLRFAYGA  625 (630)
Q Consensus       598 g~~l~t~~-H~~~V~sVa-s~~~~~lAsgs  625 (630)
                      .+.+..+. +...+.+++ +|++.+++++.
T Consensus       275 ~~~~~~~~~~~~~~~~~~~spdg~~l~v~~  304 (347)
T 3hfq_A          275 LTLIQQISTEGDFPRDFDLDPTEAFVVVVN  304 (347)
T ss_dssp             EEEEEEEECSSSCCCEEEECTTSSEEEEEE
T ss_pred             EEEeEEEecCCCCcCeEEECCCCCEEEEEE
Confidence            25566666 677788999 88888776654

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.73  E-value=4.1e-15  Score=153.68  Aligned_cols=212  Identities=14%  Similarity=0.039  Sum_probs=138.8

Q ss_pred             eecCccceeEEEeec---ceEeec-CCCccEecccCC-CCce--eEEecC-C-------ccCCEEEEEEcCCCCeEEeec
Q 006825          335 CVGHSPIVQELMRRQ---NVEEGN-KDSFDLNNNGSS-GGGM--KSKKKG-S-------WFKSIRTVASSVTGHKERRSS  399 (630)
Q Consensus       335 l~GHs~~V~~Lafs~---~laSgS-~D~tvr~vWD~~-tG~~--~~~lk~-g-------H~~~V~sVAfSpdG~~lasgS  399 (630)
                      +.+|...+..|+|+|   .|++++ .+++++ +|++. +|..  +..+.. +       +...+.+++|+|+|+++    
T Consensus        81 ~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~-v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~----  155 (347)
T 3hfq_A           81 VVAPGTPPAYVAVDEARQLVYSANYHKGTAE-VMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLA----  155 (347)
T ss_dssp             EEEESCCCSEEEEETTTTEEEEEETTTTEEE-EEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEE----
T ss_pred             eecCCCCCEEEEECCCCCEEEEEeCCCCEEE-EEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEE----
Confidence            344556678889998   466666 778999 99985 3432  222221 1       22358889999998733    


Q ss_pred             CCCCCccccCCcceEEEeecCCCeEEEecCCcEEEEEeCC-CCcccceeeeeEecccC-cCEEEEEEccCCCEEEE-EeC
Q 006825          400 DERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKS-CKDLTALYKCQEIQAHN-GSIWSIKFSLDGRYLAS-AGE  476 (630)
Q Consensus       400 ~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~-~~el~~~~~v~tL~gHt-~~V~sVaFSpDG~~LAS-gS~  476 (630)
                                               ++...++.|++|++. .+++.   .+..+..+. ..+..++|+|||++|+. ...
T Consensus       156 -------------------------v~~~~~~~v~~~~~~~~g~~~---~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~  207 (347)
T 3hfq_A          156 -------------------------VIDLGSDKVYVYNVSDAGQLS---EQSVLTMEAGFGPRHLVFSPDGQYAFLAGEL  207 (347)
T ss_dssp             -------------------------EEETTTTEEEEEEECTTSCEE---EEEEEECCTTCCEEEEEECTTSSEEEEEETT
T ss_pred             -------------------------EEeCCCCEEEEEEECCCCcEE---EeeeEEcCCCCCCceEEECCCCCEEEEEeCC
Confidence                                     344456789999987 34322   222333333 36788999999996555 567


Q ss_pred             CCcEEEEECcC--Ccee--eeeeccc-ccCcccceEEEEECCCCCEE-EEeeCCCeeeeecccccccccccccCcccccc
Q 006825          477 DCVIHVWQVVE--SERK--GELLEKQ-EDGHLNMLLLANGSPEPTSL-SPKHLDNHLEKKRRGRSINRKSLSLDHMVVPE  550 (630)
Q Consensus       477 DgtIrVWDl~t--g~~~--~~l~~~~-~~gh~~~V~svafSpdg~~l-asgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~  550 (630)
                      ++.|++|++..  ++..  ..+.... .......+..++|+|+|++| ++...++.|                       
T Consensus       208 ~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v-----------------------  264 (347)
T 3hfq_A          208 SSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTL-----------------------  264 (347)
T ss_dssp             TTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEE-----------------------
T ss_pred             CCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEE-----------------------
Confidence            89999999874  4321  1111000 00011457889999999977 455567888                       


Q ss_pred             EEEeCC--C--CceEEeccCCCCEEEEEEcCC-CeEEEEEC-CCcEEEE--eCCCCcEEE
Q 006825          551 TVFALS--D--KPICSFQGHLDDVLDLSWSKS-QHLLSSSM-DKTVRLW--HLSSKTCLK  602 (630)
Q Consensus       551 ~Vwdls--g--k~l~tL~GHs~~V~sLafSPd-~~LaSgS~-DgtVrIW--Dl~tg~~l~  602 (630)
                      .+|++.  +  +.+..+..|...+..++|+|+ ++|++++. +++|.||  |..+|+...
T Consensus       265 ~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l~~  324 (347)
T 3hfq_A          265 AVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSGKLSL  324 (347)
T ss_dssp             EEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEE
T ss_pred             EEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCeEEe
Confidence            566652  2  345566667777899999999 78887776 4999999  666777654

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.72  E-value=8.3e-17  Score=175.26  Aligned_cols=143  Identities=15%  Similarity=0.128  Sum_probs=116.8

Q ss_pred             ccCcCEEEEEEccCCCEEE----EEeCCCcEEEEECcCC--------ceeeeeecccccCcccceEEEEECCC-CCEEEE
Q 006825          454 AHNGSIWSIKFSLDGRYLA----SAGEDCVIHVWQVVES--------ERKGELLEKQEDGHLNMLLLANGSPE-PTSLSP  520 (630)
Q Consensus       454 gHt~~V~sVaFSpDG~~LA----SgS~DgtIrVWDl~tg--------~~~~~l~~~~~~gh~~~V~svafSpd-g~~las  520 (630)
                      .|...|++++|+|+|++||    +|+.|++|+|||+.++        +.+..+  ..+.+|...|.+++|+|+ +.+|++
T Consensus        90 ~~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~--~~~~~h~~~V~~v~~~p~~~~~las  167 (434)
T 2oit_A           90 PMKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYH--KLLKDAGGMVIDMKWNPTVPSMVAV  167 (434)
T ss_dssp             CCSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEE--ECCCSGGGSEEEEEECSSCTTEEEE
T ss_pred             cCCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeee--eccCCCCCceEEEEECCCCCCEEEE
Confidence            4677899999999999999    8999999999999765        111111  224789999999999998 899999


Q ss_pred             eeCCCeeeeecccccccccccccCccccccEEEeC-CCCceEEeccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCCC
Q 006825          521 KHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSK  598 (630)
Q Consensus       521 gs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg  598 (630)
                      ++.|++|                       ++|++ ++..+....+|...|++++|+|+ ++|++|+.|++|+|||++ +
T Consensus       168 ~s~Dg~v-----------------------~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~  223 (434)
T 2oit_A          168 CLADGSI-----------------------AVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-L  223 (434)
T ss_dssp             EETTSCE-----------------------EEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-C
T ss_pred             EECCCeE-----------------------EEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-C
Confidence            9999999                       77877 45566667789999999999999 999999999999999998 7


Q ss_pred             cEEEEEe-cC-------CceEEEE-cCCCcEEE
Q 006825          599 TCLKIFS-HS-------DYDISLV-DRLMLRFA  622 (630)
Q Consensus       599 ~~l~t~~-H~-------~~V~sVa-s~~~~~lA  622 (630)
                      +...++. |.       ..|.+++ .+...+++
T Consensus       224 ~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~  256 (434)
T 2oit_A          224 QEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAI  256 (434)
T ss_dssp             CEEEEECCCTTCCTTSCEEEEEEEEEETTEEEE
T ss_pred             cccccccCCcccCCCCceeEEEEEEecCceEEE
Confidence            7777665 32       2788888 65555553

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.71  E-value=2.6e-16  Score=175.48  Aligned_cols=177  Identities=11%  Similarity=-0.026  Sum_probs=132.8

Q ss_pred             ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecC
Q 006825          350 NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQE  429 (630)
Q Consensus       350 ~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~  429 (630)
                      .+++++.|. +. +||+.+|+...... ++.   .+++|||||++++.++.+.                         ..
T Consensus       125 ~~~s~~~~~-~~-l~d~~~g~~~~l~~-~~~---~~~~~spDG~~la~~~~~~-------------------------~~  173 (582)
T 3o4h_A          125 VFTGATEDR-VA-LYALDGGGLRELAR-LPG---FGFVSDIRGDLIAGLGFFG-------------------------GG  173 (582)
T ss_dssp             EEEEECSSC-EE-EEEEETTEEEEEEE-ESS---CEEEEEEETTEEEEEEEEE-------------------------TT
T ss_pred             EEEecCCCC-ce-EEEccCCcEEEeec-CCC---ceEEECCCCCEEEEEEEcC-------------------------CC
Confidence            355555554 44 89998887665554 333   7889999999887654331                         12


Q ss_pred             CcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCC--cEEEEECcCCceeeeeecccccCcccceE
Q 006825          430 RVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDC--VIHVWQVVESERKGELLEKQEDGHLNMLL  507 (630)
Q Consensus       430 Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~Dg--tIrVWDl~tg~~~~~l~~~~~~gh~~~V~  507 (630)
                      ...|++||+.+++.      ..|.+|.+.+..++|+|||++|+++..|+  +|++||+.+++.. .     ..+|...+.
T Consensus       174 ~~~i~~~d~~~g~~------~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~-----~~~~~~~~~  241 (582)
T 3o4h_A          174 RVSLFTSNLSSGGL------RVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-D-----LELPSKDFS  241 (582)
T ss_dssp             EEEEEEEETTTCCC------EEECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-E-----CCCSCSHHH
T ss_pred             CeEEEEEcCCCCCc------eEeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-E-----ccCCCcChh
Confidence            25699999887753      46788999999999999999999988999  8999999988766 3     256655555


Q ss_pred             EEE--------ECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeCCCCceEEeccCCCCEEEEEEcCC-
Q 006825          508 LAN--------GSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-  578 (630)
Q Consensus       508 sva--------fSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL~GHs~~V~sLafSPd-  578 (630)
                      .++        |+|||.+++++..++.+                       ++|.+ |+.+.   .+...|.+++|+ + 
T Consensus       242 ~~~~~~~~~~~~spdg~~~~~~~~~g~~-----------------------~l~~~-g~~~~---~~~~~v~~~~~s-dg  293 (582)
T 3o4h_A          242 SYRPTAITWLGYLPDGRLAVVARREGRS-----------------------AVFID-GERVE---APQGNHGRVVLW-RG  293 (582)
T ss_dssp             HHCCSEEEEEEECTTSCEEEEEEETTEE-----------------------EEEET-TEEEC---CCSSEEEEEEEE-TT
T ss_pred             hhhhccccceeEcCCCcEEEEEEcCCcE-----------------------EEEEE-CCeec---cCCCceEEEEec-CC
Confidence            556        99999999999999988                       77777 65544   344678999999 8 


Q ss_pred             CeEEEEECCCc---EEEEeCCC
Q 006825          579 QHLLSSSMDKT---VRLWHLSS  597 (630)
Q Consensus       579 ~~LaSgS~Dgt---VrIWDl~t  597 (630)
                      +++++++.+.+   |.+||...
T Consensus       294 ~~l~~~s~~~~p~~l~~~d~~~  315 (582)
T 3o4h_A          294 KLVTSHTSLSTPPRIVSLPSGE  315 (582)
T ss_dssp             EEEEEEEETTEEEEEEEETTCC
T ss_pred             EEEEEEcCCCCCCeEEEEcCCC
Confidence            78888887754   67777653

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.71  E-value=1.6e-15  Score=154.89  Aligned_cols=235  Identities=14%  Similarity=0.066  Sum_probs=155.6

Q ss_pred             eEEEEcCCCceEeeecceeeecCc-cceeEEEeec----ceEeecCCCccEecccCCCCceeEEecCCc-----cCCEEE
Q 006825          316 KKVKEVGTGRQLTIEEFEMCVGHS-PIVQELMRRQ----NVEEGNKDSFDLNNNGSSGGGMKSKKKGSW-----FKSIRT  385 (630)
Q Consensus       316 ~~l~dv~TG~~lt~eef~~l~GHs-~~V~~Lafs~----~laSgS~D~tvr~vWD~~tG~~~~~lk~gH-----~~~V~s  385 (630)
                      ..+||+.+|+.+     .++..+. ..+..++|+|    .++++..++++. +||+.+++.+..+..++     ...+..
T Consensus        23 v~~~d~~~~~~~-----~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~-~~d~~t~~~~~~~~~~~~~~~~~~~~~~   96 (349)
T 1jmx_B           23 LHVVDVASDTVY-----KSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIY-GIDLDTCKNTFHANLSSVPGEVGRSMYS   96 (349)
T ss_dssp             EEEEETTTTEEE-----EEEECSSCCSSCEEEECTTSSEEEEEETTTTEEE-EEETTTTEEEEEEESCCSTTEEEECSSC
T ss_pred             EEEEECCCCcEE-----EEEecCCCCCCceeEECCCCCEEEEEeCCCCcEE-EEeCCCCcEEEEEEcccccccccccccc
Confidence            456676676665     3333222 2466788887    345667889999 99999999888776444     344778


Q ss_pred             EEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEc
Q 006825          386 VASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFS  465 (630)
Q Consensus       386 VAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFS  465 (630)
                      ++|+|+|++++.++.+.               ....+. + +..++.|++||+.+++...  .+..+..+ ..+.+++|+
T Consensus        97 ~~~spdg~~l~~~~~~~---------------~~~~~~-~-~~~~~~i~~~d~~~~~~~~--~~~~~~~~-~~~~~~~~s  156 (349)
T 1jmx_B           97 FAISPDGKEVYATVNPT---------------QRLNDH-Y-VVKPPRLEVFSTADGLEAK--PVRTFPMP-RQVYLMRAA  156 (349)
T ss_dssp             EEECTTSSEEEEEEEEE---------------EECSSC-E-EECCCEEEEEEGGGGGGBC--CSEEEECC-SSCCCEEEC
T ss_pred             eEECCCCCEEEEEcccc---------------cccccc-c-ccCCCeEEEEECCCccccc--eeeeccCC-CcccceeEC
Confidence            99999999887654220               000000 0 1124689999987654321  23334433 468899999


Q ss_pred             cCCCEEEEEeCCCcEEEEECcCCceeeeeecccccC--------------------------------------------
Q 006825          466 LDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDG--------------------------------------------  501 (630)
Q Consensus       466 pDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~g--------------------------------------------  501 (630)
                      |||+ |+.++.  .|++||+.+++....+.......                                            
T Consensus       157 ~dg~-l~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  233 (349)
T 1jmx_B          157 DDGS-LYVAGP--DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLY  233 (349)
T ss_dssp             TTSC-EEEESS--SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEE
T ss_pred             CCCc-EEEccC--cEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccce
Confidence            9999 555554  49999999888766542110000                                            


Q ss_pred             -------------------cccceEEEEECC-CCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeC-CCCce
Q 006825          502 -------------------HLNMLLLANGSP-EPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPI  560 (630)
Q Consensus       502 -------------------h~~~V~svafSp-dg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l  560 (630)
                                         +...+..++++| ++++++++  ++.|                       .+|++ +++.+
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v-----------------------~~~d~~~~~~~  288 (349)
T 1jmx_B          234 GYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRL-----------------------AKYDLKQRKLI  288 (349)
T ss_dssp             EEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEE-----------------------EEEETTTTEEE
T ss_pred             eEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeE-----------------------EEEECccCeEE
Confidence                               001234556667 77766666  5555                       78887 56666


Q ss_pred             EEeccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCCCcEEEEEe
Q 006825          561 CSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS  605 (630)
Q Consensus       561 ~tL~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg~~l~t~~  605 (630)
                      ..+..+ ..+.+++|+|+ ++|++++.++.|++||+.+++.+..+.
T Consensus       289 ~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~~~~~  333 (349)
T 1jmx_B          289 KAANLD-HTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIK  333 (349)
T ss_dssp             EEEECS-SCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEE
T ss_pred             EEEcCC-CCccceEECCCCCEEEEecCCCeEEEEeccccceeeeee
Confidence            666533 45789999999 788888889999999999999999887

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.70  E-value=2.4e-15  Score=170.92  Aligned_cols=251  Identities=7%  Similarity=-0.031  Sum_probs=170.8

Q ss_pred             eEEEEcCCCceEeeecceeeecCccceeEEEeec---ceEeecCCCccEecccCCC-----CceeEEecCCccCC-----
Q 006825          316 KKVKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSG-----GGMKSKKKGSWFKS-----  382 (630)
Q Consensus       316 ~~l~dv~TG~~lt~eef~~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~t-----G~~~~~lk~gH~~~-----  382 (630)
                      .++|++.+|+..      .+..|...|..++|+|   .|+. +.|++++ +||+.+     |+...... .+...     
T Consensus       103 i~~~d~~~~~~~------~l~~~~~~~~~~~~SpdG~~la~-~~~~~i~-v~~~~~~~~~~g~~~~~~~-~~~~~~~~g~  173 (706)
T 2z3z_A          103 LVGFDMLARKVT------YLFDTNEETASLDFSPVGDRVAY-VRNHNLY-IARGGKLGEGMSRAIAVTI-DGTETLVYGQ  173 (706)
T ss_dssp             EEEEETTTTEEE------EEECCTTCCTTCEECTTSSEEEE-EETTEEE-EEECBCTTSCCCCCEESCS-CCBTTEEESS
T ss_pred             EEEEECCCCceE------EccCCcccccCCcCCCCCCEEEE-EECCeEE-EEecCcccccCCCcEEecc-CCCCCeEccc
Confidence            345666665443      3344556678889998   5666 4789999 999999     87776555 34443     


Q ss_pred             ---------EEEEEEcCCCCeEEeecCC---------------------------------C-------CCcc------c
Q 006825          383 ---------IRTVASSVTGHKERRSSDE---------------------------------R-------DTSS------E  407 (630)
Q Consensus       383 ---------V~sVAfSpdG~~lasgS~D---------------------------------~-------dt~s------~  407 (630)
                               +.+++|||||++|+.++.|                                 .       +++.      .
T Consensus       174 ~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~  253 (706)
T 2z3z_A          174 AVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTG  253 (706)
T ss_dssp             CCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCC
T ss_pred             chhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccC
Confidence                     4889999999999988722                                 1       1111      1


Q ss_pred             cCCcceEEEeecCCCe--EEEecCC-----cEEEEEeCCCC-cccceeeeeEecccCc---CEEEEEEcc--CCCEEEEE
Q 006825          408 KGGRRSSSATDDSQDV--SFHGQER-----VRVRQYGKSCK-DLTALYKCQEIQAHNG---SIWSIKFSL--DGRYLASA  474 (630)
Q Consensus       408 ~gh~~~Vsa~~~s~d~--l~Sgs~D-----g~VriWd~~~~-el~~~~~v~tL~gHt~---~V~sVaFSp--DG~~LASg  474 (630)
                      ..|...+..+.+++++  ++.+..+     .+|++||..++ ....   +.. ..+..   .+..++|+|  ||++|+++
T Consensus       254 ~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~---~~~-~~~~~~~~~~~~~~~sp~~dg~~l~~~  329 (706)
T 2z3z_A          254 EPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRT---LFV-ETDKHYVEPLHPLTFLPGSNNQFIWQS  329 (706)
T ss_dssp             SCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEE---EEE-EECSSCCCCCSCCEECTTCSSEEEEEE
T ss_pred             CCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeE---EEE-ccCCCeECccCCceeecCCCCEEEEEE
Confidence            2466778899999998  6665544     49999999876 3211   111 12222   346789999  99999999


Q ss_pred             eCCCcEEEEECc-CCceeeeeecccccCcccceEE-EEECCCCCEEEEeeCCCe---eeeecccccccccccccCccccc
Q 006825          475 GEDCVIHVWQVV-ESERKGELLEKQEDGHLNMLLL-ANGSPEPTSLSPKHLDNH---LEKKRRGRSINRKSLSLDHMVVP  549 (630)
Q Consensus       475 S~DgtIrVWDl~-tg~~~~~l~~~~~~gh~~~V~s-vafSpdg~~lasgs~Dg~---I~i~~~~~~~~~~s~s~d~~i~~  549 (630)
                      +.|+.++||.+. ++..+..+     ..+...+.. ++|+|+++.|+.++.+..   +.+                    
T Consensus       330 ~~~g~~~l~~~~~~~~~~~~l-----~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l--------------------  384 (706)
T 2z3z_A          330 RRDGWNHLYLYDTTGRLIRQV-----TKGEWEVTNFAGFDPKGTRLYFESTEASPLERHF--------------------  384 (706)
T ss_dssp             CTTSSCEEEEEETTSCEEEEC-----CCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEE--------------------
T ss_pred             ccCCccEEEEEECCCCEEEec-----CCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEE--------------------
Confidence            999999999986 55555554     456666765 799999988776654431   211                    


Q ss_pred             cEEEeCCCCceEEeccCCCCEEEEEEcCC-CeEEEEECC----CcEEEEeCCCCcEEEEEecC
Q 006825          550 ETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMD----KTVRLWHLSSKTCLKIFSHS  607 (630)
Q Consensus       550 ~~Vwdlsgk~l~tL~GHs~~V~sLafSPd-~~LaSgS~D----gtVrIWDl~tg~~l~t~~H~  607 (630)
                       ..|++.+..+..+. |...+..++|+|+ ++|+..+.+    +.|++||+.+++ +..+.+.
T Consensus       385 -~~~d~~~~~~~~l~-~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~~-~~~~~~~  444 (706)
T 2z3z_A          385 -YCIDIKGGKTKDLT-PESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKGS-HTLLEAK  444 (706)
T ss_dssp             -EEEETTCCCCEESC-CSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSSCE-EEEEECC
T ss_pred             -EEEEcCCCCceecc-CCCceEEEEECCCCCEEEEEecCCCCCcEEEEEECCCCe-Eeecccc
Confidence             44555443344444 7778999999999 777765443    569999999887 4444443

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.70  E-value=1.4e-15  Score=155.41  Aligned_cols=234  Identities=8%  Similarity=-0.044  Sum_probs=156.5

Q ss_pred             ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecC
Q 006825          350 NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQE  429 (630)
Q Consensus       350 ~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~  429 (630)
                      .+++++.++++. +||..+++.+.++..+....+..++|+|+|+++.                            ++...
T Consensus        13 ~~v~~~~~~~v~-~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~----------------------------v~~~~   63 (349)
T 1jmx_B           13 YMIVTNYPNNLH-VVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAY----------------------------VLNNH   63 (349)
T ss_dssp             EEEEEETTTEEE-EEETTTTEEEEEEECSSCCSSCEEEECTTSSEEE----------------------------EEETT
T ss_pred             EEEEeCCCCeEE-EEECCCCcEEEEEecCCCCCCceeEECCCCCEEE----------------------------EEeCC
Confidence            478899999999 9999999998888744433577899999998653                            33455


Q ss_pred             CcEEEEEeCCCCcccceeeeeEec-cc-----CcCEEEEEEccCCCEEEEEeCC------------CcEEEEECcCCcee
Q 006825          430 RVRVRQYGKSCKDLTALYKCQEIQ-AH-----NGSIWSIKFSLDGRYLASAGED------------CVIHVWQVVESERK  491 (630)
Q Consensus       430 Dg~VriWd~~~~el~~~~~v~tL~-gH-----t~~V~sVaFSpDG~~LASgS~D------------gtIrVWDl~tg~~~  491 (630)
                      ++.|++||..+++.     +..+. ++     ...+..++|+|||++|++++.+            +.|.+||+.+++..
T Consensus        64 ~~~i~~~d~~t~~~-----~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~  138 (349)
T 1jmx_B           64 YGDIYGIDLDTCKN-----TFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEA  138 (349)
T ss_dssp             TTEEEEEETTTTEE-----EEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGB
T ss_pred             CCcEEEEeCCCCcE-----EEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCcccc
Confidence            77899999987643     33333 22     2347899999999999999866            89999999886543


Q ss_pred             eeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCc----------------------cc-c
Q 006825          492 GELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDH----------------------MV-V  548 (630)
Q Consensus       492 ~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~----------------------~i-~  548 (630)
                      ..+..   ..+...+.+++|+|++++ +.++.  .|.+|+.........+....                      .+ .
T Consensus       139 ~~~~~---~~~~~~~~~~~~s~dg~l-~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  212 (349)
T 1jmx_B          139 KPVRT---FPMPRQVYLMRAADDGSL-YVAGP--DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSM  212 (349)
T ss_dssp             CCSEE---EECCSSCCCEEECTTSCE-EEESS--SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEE
T ss_pred             ceeee---ccCCCcccceeECCCCcE-EEccC--cEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEe
Confidence            32210   122235778899999994 44433  37777765432222211110                      00 0


Q ss_pred             c---------------------cEEEeCCCCc--eEEeccCCCCEEEEEEcC-C-CeEEEEECCCcEEEEeCCCCcEEEE
Q 006825          549 P---------------------ETVFALSDKP--ICSFQGHLDDVLDLSWSK-S-QHLLSSSMDKTVRLWHLSSKTCLKI  603 (630)
Q Consensus       549 ~---------------------~~Vwdlsgk~--l~tL~GHs~~V~sLafSP-d-~~LaSgS~DgtVrIWDl~tg~~l~t  603 (630)
                      +                     ...++.....  +..+..+...+..++|+| + ++|+++  ++.|++||+.+++.+..
T Consensus       213 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~  290 (349)
T 1jmx_B          213 LYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKA  290 (349)
T ss_dssp             EEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEE
T ss_pred             eeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEE
Confidence            0                     0012221111  122334556788999999 8 777777  89999999999999998


Q ss_pred             EecCCceEEEE-cCCCcEEEEec
Q 006825          604 FSHSDYDISLV-DRLMLRFAYGA  625 (630)
Q Consensus       604 ~~H~~~V~sVa-s~~~~~lAsgs  625 (630)
                      +.....+.+++ ++++..+++++
T Consensus       291 ~~~~~~~~~~~~s~dg~~l~~~~  313 (349)
T 1jmx_B          291 ANLDHTYYCVAFDKKGDKLYLGG  313 (349)
T ss_dssp             EECSSCCCEEEECSSSSCEEEES
T ss_pred             EcCCCCccceEECCCCCEEEEec
Confidence            88555677888 77766555543

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.68  E-value=1.6e-14  Score=147.95  Aligned_cols=217  Identities=10%  Similarity=-0.002  Sum_probs=160.1

Q ss_pred             cceeEEEeec---ceEeecC-------CCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccccC
Q 006825          340 PIVQELMRRQ---NVEEGNK-------DSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKG  409 (630)
Q Consensus       340 ~~V~~Lafs~---~laSgS~-------D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~g  409 (630)
                      ..+..++|+|   .++.++.       ++++. +||..+++.+.++..  ...+..++|+|+|+++.             
T Consensus        41 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~-~~d~~~~~~~~~~~~--~~~~~~~~~s~dg~~l~-------------  104 (353)
T 3vgz_A           41 KGAYEMAYSQQENALWLATSQSRKLDKGGVVY-RLDPVTLEVTQAIHN--DLKPFGATINNTTQTLW-------------  104 (353)
T ss_dssp             SSEEEEEEETTTTEEEEEECCCTTTEESEEEE-EECTTTCCEEEEEEE--SSCCCSEEEETTTTEEE-------------
T ss_pred             cCccceEECCCCCEEEEEcCCCcCCCCCccEE-EEcCCCCeEEEEEec--CCCcceEEECCCCCEEE-------------
Confidence            4567888888   4444442       56899 999999998888763  34477899999998654             


Q ss_pred             CcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcC---------EEEEEEccCCCEEEEEe--CCC
Q 006825          410 GRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGS---------IWSIKFSLDGRYLASAG--EDC  478 (630)
Q Consensus       410 h~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~---------V~sVaFSpDG~~LASgS--~Dg  478 (630)
                                     ++...++.|++||..+++.     +..+..+...         +.+++|+|+|++|+.++  .++
T Consensus       105 ---------------v~~~~~~~v~~~d~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~  164 (353)
T 3vgz_A          105 ---------------FGNTVNSAVTAIDAKTGEV-----KGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKES  164 (353)
T ss_dssp             ---------------EEETTTTEEEEEETTTCCE-----EEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSC
T ss_pred             ---------------EEecCCCEEEEEeCCCCee-----EEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCc
Confidence                           3445567899999987753     3445444322         78999999999877776  588


Q ss_pred             cEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeC-CC
Q 006825          479 VIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SD  557 (630)
Q Consensus       479 tIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sg  557 (630)
                      .|.+||+.+++.+..+     ..+...+..++|+|++++++.+..++.|                       .+|+. ++
T Consensus       165 ~i~~~d~~~~~~~~~~-----~~~~~~~~~~~~s~dg~~l~~~~~~~~i-----------------------~~~d~~~~  216 (353)
T 3vgz_A          165 VIWVVDGGNIKLKTAI-----QNTGKMSTGLALDSEGKRLYTTNADGEL-----------------------ITIDTADN  216 (353)
T ss_dssp             EEEEEETTTTEEEEEE-----CCCCTTCCCCEEETTTTEEEEECTTSEE-----------------------EEEETTTT
T ss_pred             eEEEEcCCCCceEEEe-----cCCCCccceEEECCCCCEEEEEcCCCeE-----------------------EEEECCCC
Confidence            9999999998877664     3334456788999999999998888888                       66776 55


Q ss_pred             CceEEec----cCCCCEEEEEEcCC-CeEEEEE-CCCcEEEEeCCCCcEEEEEecCCceEEEE-cCCCcEE
Q 006825          558 KPICSFQ----GHLDDVLDLSWSKS-QHLLSSS-MDKTVRLWHLSSKTCLKIFSHSDYDISLV-DRLMLRF  621 (630)
Q Consensus       558 k~l~tL~----GHs~~V~sLafSPd-~~LaSgS-~DgtVrIWDl~tg~~l~t~~H~~~V~sVa-s~~~~~l  621 (630)
                      +.+..+.    ++...+..++|+|+ ++|+.++ .++.|.+||+.+++.+..+..... .+++ ++++..+
T Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~s~dg~~l  286 (353)
T 3vgz_A          217 KILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPES-LAVLFNPARNEA  286 (353)
T ss_dssp             EEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSSC-CCEEEETTTTEE
T ss_pred             eEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCC-ceEEECCCCCEE
Confidence            6665554    35667899999999 7665555 569999999999999988872222 3455 6666543

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.64  E-value=5e-16  Score=177.14  Aligned_cols=251  Identities=8%  Similarity=-0.116  Sum_probs=165.1

Q ss_pred             EEEeec--ceEeecCCCccEecccCCCCceeEEecCCccC---CEEEEEEcCCCCeEEeecC---------CC-------
Q 006825          344 ELMRRQ--NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFK---SIRTVASSVTGHKERRSSD---------ER-------  402 (630)
Q Consensus       344 ~Lafs~--~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~---~V~sVAfSpdG~~lasgS~---------D~-------  402 (630)
                      .++|+|  .++..+.|++++ +||+.+|+....+. +|..   .|.+++|||||++|+.++.         +.       
T Consensus        20 ~~~~s~dg~~~~~~~d~~i~-~~~~~~g~~~~~~~-~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~   97 (719)
T 1z68_A           20 FPNWISGQEYLHQSADNNIV-LYNIETGQSYTILS-NRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDL   97 (719)
T ss_dssp             CCEESSSSEEEEECTTSCEE-EEESSSCCEEEEEC-HHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEET
T ss_pred             ccEECCCCeEEEEcCCCCEE-EEEcCCCcEEEEEc-cccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEEC
Confidence            667777  344445699999 99999999887776 6654   4899999999999998875         22       


Q ss_pred             CCccc---cCCcceEEEeecCCCe--EEEecCCcEEEEEeCCCCcccceeeeeEecccCcCE-----------------E
Q 006825          403 DTSSE---KGGRRSSSATDDSQDV--SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSI-----------------W  460 (630)
Q Consensus       403 dt~s~---~gh~~~Vsa~~~s~d~--l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V-----------------~  460 (630)
                      +++..   ..-...+..+.+++++  ++.+ .++.|++|+..+++...+    +..+|...|                 .
T Consensus        98 ~~g~~~~~~~l~~~~~~~~~SPDG~~la~~-~~~~i~~~~~~~g~~~~l----~~~~~~~~v~~g~~~~v~~ee~~~~~~  172 (719)
T 1z68_A           98 SNGEFVRGNELPRPIQYLCWSPVGSKLAYV-YQNNIYLKQRPGDPPFQI----TFNGRENKIFNGIPDWVYEEEMLATKY  172 (719)
T ss_dssp             TTTEECCSSCCCSSBCCEEECSSTTCEEEE-ETTEEEEESSTTSCCEEC----CCCCBTTTEEESSCCHHHHHHTTCSSC
T ss_pred             CCCccccceecCcccccceECCCCCEEEEE-ECCeEEEEeCCCCCcEEE----ecCCCcCCeEcccccceeeeecccCcc
Confidence            22222   2222456778899998  5555 478999999987653211    113333333                 4


Q ss_pred             EEEEccCCCEEEEEeCCC----------------------------------cEEEEECcCCcee--eeeec-ccccCcc
Q 006825          461 SIKFSLDGRYLASAGEDC----------------------------------VIHVWQVVESERK--GELLE-KQEDGHL  503 (630)
Q Consensus       461 sVaFSpDG~~LASgS~Dg----------------------------------tIrVWDl~tg~~~--~~l~~-~~~~gh~  503 (630)
                      +++|||||++||+++.|.                                  +|++||+.+++..  ..+.. ..+.+|.
T Consensus       173 ~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~  252 (719)
T 1z68_A          173 ALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSD  252 (719)
T ss_dssp             CEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSC
T ss_pred             cEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCc
Confidence            899999999999998663                                  7899999887643  12110 1134678


Q ss_pred             cceEEEEECCCCCEEEEeeCC--CeeeeecccccccccccccCccccccEEEe----C-CCCceEEe----ccCCCCEE-
Q 006825          504 NMLLLANGSPEPTSLSPKHLD--NHLEKKRRGRSINRKSLSLDHMVVPETVFA----L-SDKPICSF----QGHLDDVL-  571 (630)
Q Consensus       504 ~~V~svafSpdg~~lasgs~D--g~I~i~~~~~~~~~~s~s~d~~i~~~~Vwd----l-sgk~l~tL----~GHs~~V~-  571 (630)
                      ..+..++|+||++++++....  ....+                     .+|+    + ++++...+    .+|...|. 
T Consensus       253 ~~~~~~~~SpD~~~~~~~~~~~~~~~~l---------------------~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~  311 (719)
T 1z68_A          253 YYFSWLTWVTDERVCLQWLKRVQNVSVL---------------------SICDFREDWQTWDCPKTQEHIEESRTGWAGG  311 (719)
T ss_dssp             EEEEEEEESSSSEEEEEEEESSTTEEEE---------------------EEEEECSSSSSEECCGGGEEEEECSSSCSSS
T ss_pred             ceEEEeEEeCCCeEEEEEeccccCeEEE---------------------EEEcccCCCCCCceEEEEecccccCCceEcc
Confidence            889999999998877764322  22211                     5566    5 34443333    47777777 


Q ss_pred             ----EEEEcCC-CeEE--EEECCC--cEEEEeCCCCcEEEEEe-cCCceEEEE-cCCCcEEEEe
Q 006825          572 ----DLSWSKS-QHLL--SSSMDK--TVRLWHLSSKTCLKIFS-HSDYDISLV-DRLMLRFAYG  624 (630)
Q Consensus       572 ----sLafSPd-~~La--SgS~Dg--tVrIWDl~tg~~l~t~~-H~~~V~sVa-s~~~~~lAsg  624 (630)
                          .++|+|| +.|+  +...++  .|.+||+.+++ ...+. +...|..+. . ++..+++.
T Consensus       312 ~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~-~~~lt~~~~~v~~~~~~-d~~~i~~~  373 (719)
T 1z68_A          312 FFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN-AIQITSGKWEAINIFRV-TQDSLFYS  373 (719)
T ss_dssp             SSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT-CEECSCSSSCEEEEEEE-CSSEEEEE
T ss_pred             ccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc-eEecccCceEEEEEEEE-eCCEEEEE
Confidence                8999999 6444  344555  57777887776 34454 555566655 4 44444433

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.63  E-value=2.9e-14  Score=149.92  Aligned_cols=188  Identities=8%  Similarity=-0.077  Sum_probs=128.0

Q ss_pred             CCCccEecccCC-CCceeEEec---CCccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCc
Q 006825          356 KDSFDLNNNGSS-GGGMKSKKK---GSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERV  431 (630)
Q Consensus       356 ~D~tvr~vWD~~-tG~~~~~lk---~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg  431 (630)
                      .+++++ +|++. .|+....+.   ..+...+.+++|+|||++++.+                            ...+.
T Consensus       117 ~~g~v~-v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~----------------------------~~~~~  167 (365)
T 1jof_A          117 FAGYGN-VFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSA----------------------------DLTAN  167 (365)
T ss_dssp             SCCEEE-EEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEE----------------------------ETTTT
T ss_pred             CCceEE-EEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEE----------------------------cCCCC
Confidence            688999 99997 476554443   1356789999999999877532                            22345


Q ss_pred             EEEEEeCC-CCcccceeeeeEec--ccCcCEEEEEEccCCCEEEEEeC-CCcEEEEECc--CCceee---eeecc--ccc
Q 006825          432 RVRQYGKS-CKDLTALYKCQEIQ--AHNGSIWSIKFSLDGRYLASAGE-DCVIHVWQVV--ESERKG---ELLEK--QED  500 (630)
Q Consensus       432 ~VriWd~~-~~el~~~~~v~tL~--gHt~~V~sVaFSpDG~~LASgS~-DgtIrVWDl~--tg~~~~---~l~~~--~~~  500 (630)
                      .|++|+.. ++++.   .+..+.  .|...+..++|+|||++|++++. +++|.+|++.  +++...   .+...  ...
T Consensus       168 ~v~~~~~~~~g~~~---~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~  244 (365)
T 1jof_A          168 KLWTHRKLASGEVE---LVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIP  244 (365)
T ss_dssp             EEEEEEECTTSCEE---EEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCC
T ss_pred             EEEEEEECCCCCEE---EeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcC
Confidence            79999987 55432   223343  35667999999999999988775 7899999875  454321   11100  012


Q ss_pred             Cccc------ceEEEE-ECCCCCEEEEeeCCC------eeeeecccccccccccccCccccccEEEeC--CCCceE---E
Q 006825          501 GHLN------MLLLAN-GSPEPTSLSPKHLDN------HLEKKRRGRSINRKSLSLDHMVVPETVFAL--SDKPIC---S  562 (630)
Q Consensus       501 gh~~------~V~sva-fSpdg~~lasgs~Dg------~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl--sgk~l~---t  562 (630)
                      +|..      .+..++ |+|||++|+++..+.      .|                       .+|++  +++...   .
T Consensus       245 g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i-----------------------~v~~~~~~g~~~~~~~~  301 (365)
T 1jof_A          245 DRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYI-----------------------AGFKLRDCGSIEKQLFL  301 (365)
T ss_dssp             CBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEE-----------------------EEEEECTTSCEEEEEEE
T ss_pred             CcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeE-----------------------EEEEECCCCCEEEeeee
Confidence            3332      578899 999999887765432      56                       67776  344332   2


Q ss_pred             eccCCCCEEEEEEcC---C-CeEEEEECC-CcEEEEeCCCC
Q 006825          563 FQGHLDDVLDLSWSK---S-QHLLSSSMD-KTVRLWHLSSK  598 (630)
Q Consensus       563 L~GHs~~V~sLafSP---d-~~LaSgS~D-gtVrIWDl~tg  598 (630)
                      +..+...+..++|+|   + ++|++++.+ ++|+||++...
T Consensus       302 ~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~  342 (365)
T 1jof_A          302 SPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             EECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred             eecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence            334555677899999   7 889888864 99999998766

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.62  E-value=1.6e-14  Score=162.95  Aligned_cols=258  Identities=8%  Similarity=-0.098  Sum_probs=181.7

Q ss_pred             eeeecCccceeEEEeec---ceEee--cCCCccEecccCCCCceeEEecCCccCCEE---------EEEEc--CCCCe-E
Q 006825          333 EMCVGHSPIVQELMRRQ---NVEEG--NKDSFDLNNNGSSGGGMKSKKKGSWFKSIR---------TVASS--VTGHK-E  395 (630)
Q Consensus       333 ~~l~GHs~~V~~Lafs~---~laSg--S~D~tvr~vWD~~tG~~~~~lk~gH~~~V~---------sVAfS--pdG~~-l  395 (630)
                      +.+.+|...|..++|++   ..++.  +.+++.+ ||....+.....+. .|...|+         +.+|+  |||++ |
T Consensus        17 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~SPDg~~~l   94 (662)
T 3azo_A           17 ALVASRSGRPACVGAVGDEVWWVAPRPAEAGRAT-LVRRRADGAEESAL-PAPWNVRNRVFEYSGFPWAGVPRPAGGPLL   94 (662)
T ss_dssp             HHHHHTCSCCEEEEEETTEEEEEEEETTTTTEEE-EEEECTTSCEEESS-CTTCCBCCCGGGTCCCCEEEECCSSSSCEE
T ss_pred             HHHhhcCCccceeEEcCCeEEEEecCcccCCcEE-EEEECCCCCcceeC-CCCccccccccccCCccceeeeecCCCeEE
Confidence            45778999999999999   45555  5678888 99976666677777 6777777         67666  99998 8


Q ss_pred             EeecCCC------CC-----c---cccC-----CcceEEEeecCCCe--EEEecCC----------cEEEEEeCCC----
Q 006825          396 RRSSDER------DT-----S---SEKG-----GRRSSSATDDSQDV--SFHGQER----------VRVRQYGKSC----  440 (630)
Q Consensus       396 asgS~D~------dt-----~---s~~g-----h~~~Vsa~~~s~d~--l~Sgs~D----------g~VriWd~~~----  440 (630)
                      +.+++..      +.     +   .+..     |...+....+++++  ++..+.+          ..|++|++.+    
T Consensus        95 a~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  174 (662)
T 3azo_A           95 VFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAA  174 (662)
T ss_dssp             EEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTT
T ss_pred             EEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccc
Confidence            8766532      21     1   1334     56678888999998  6666665          6899999987    


Q ss_pred             --CcccceeeeeEec-ccCcCEEEEEEccCCCEEEEEeCCC--------cEEEEECc-CCc--eeeeeecccccCcccce
Q 006825          441 --KDLTALYKCQEIQ-AHNGSIWSIKFSLDGRYLASAGEDC--------VIHVWQVV-ESE--RKGELLEKQEDGHLNML  506 (630)
Q Consensus       441 --~el~~~~~v~tL~-gHt~~V~sVaFSpDG~~LASgS~Dg--------tIrVWDl~-tg~--~~~~l~~~~~~gh~~~V  506 (630)
                        ++      ...+. .|...+..++|||||++|+.++.++        .|++||+. ++.  ....+    ..+|...+
T Consensus       175 ~~~~------~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l----~~~~~~~~  244 (662)
T 3azo_A          175 DRSA------VRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTL----LGGPEEAI  244 (662)
T ss_dssp             CGGG------SEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEE----EEETTBCE
T ss_pred             cCCc------eeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEe----CCCCCceE
Confidence              43      23455 6677889999999999999888654        79999998 562  33333    24456788


Q ss_pred             EEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeCCCCceEEec-cCCCC--------EEEEEEcC
Q 006825          507 LLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQ-GHLDD--------VLDLSWSK  577 (630)
Q Consensus       507 ~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL~-GHs~~--------V~sLafSP  577 (630)
                      ..++|+|||++++++..++.+++                     .+|++.+..+..+. +|...        +..++|+|
T Consensus       245 ~~~~~spdg~l~~~~~~~~~~~l---------------------~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~  303 (662)
T 3azo_A          245 AQAEWAPDGSLIVATDRTGWWNL---------------------HRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLA  303 (662)
T ss_dssp             EEEEECTTSCEEEEECTTSSCEE---------------------EEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECT
T ss_pred             cceEECCCCeEEEEECCCCCeEE---------------------EEEECCCCceeecccccccccCccccccCceEeEeC
Confidence            99999999998877777774422                     34444222233332 23222        56789999


Q ss_pred             C-CeEEEEECCCcEEEE--eCCCCcEEEEEe-cCCceEEE-E-cCCCcEEEEec
Q 006825          578 S-QHLLSSSMDKTVRLW--HLSSKTCLKIFS-HSDYDISL-V-DRLMLRFAYGA  625 (630)
Q Consensus       578 d-~~LaSgS~DgtVrIW--Dl~tg~~l~t~~-H~~~V~sV-a-s~~~~~lAsgs  625 (630)
                      + .+++++.. ++++||  |+.+++ ++.+. |...+..+ + ++....+++.+
T Consensus       304 ~~~~~~~~~~-~~~~l~~~d~~~~~-~~~l~~~~~~~~~~~s~~~~~~~~~~~~  355 (662)
T 3azo_A          304 NGLIAVVHGK-GAAVLGILDPESGE-LVDAAGPWTEWAATLTVSGTRAVGVAAS  355 (662)
T ss_dssp             TSCEEEEEBS-SSCEEEEEETTTTE-EEECCSSCCEEEEEEEEETTEEEEEEEE
T ss_pred             CCEEEEEEEc-CccEEEEEECCCCc-EEEecCCCCeEEEEEecCCCEEEEEEcC
Confidence            8 88889988 999999  655565 66676 87888888 5 55545554443

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.62  E-value=6.7e-15  Score=167.83  Aligned_cols=255  Identities=10%  Similarity=-0.048  Sum_probs=163.3

Q ss_pred             eeEEEeec---ceEeecC---------CCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCC----C--
Q 006825          342 VQELMRRQ---NVEEGNK---------DSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDER----D--  403 (630)
Q Consensus       342 V~~Lafs~---~laSgS~---------D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~----d--  403 (630)
                      |..++|+|   .|+.++.         |++++ +||+.+|+.+...+  ....+..++|||||++|+.+++..    +  
T Consensus        62 ~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~-~~d~~~g~~~~~~~--l~~~~~~~~~SPDG~~la~~~~~~i~~~~~~  138 (719)
T 1z68_A           62 ASNYGLSPDRQFVYLESDYSKLWRYSYTATYY-IYDLSNGEFVRGNE--LPRPIQYLCWSPVGSKLAYVYQNNIYLKQRP  138 (719)
T ss_dssp             CSEEEECTTSSEEEEEEEEEECSSSCEEEEEE-EEETTTTEECCSSC--CCSSBCCEEECSSTTCEEEEETTEEEEESST
T ss_pred             eeeEEECCCCCeEEEEecCceeEEeecceEEE-EEECCCCcccccee--cCcccccceECCCCCEEEEEECCeEEEEeCC
Confidence            78899998   6777766         78999 99999998732111  124688899999999999987543    1  


Q ss_pred             Ccc-----ccCCcceE-----------------EEeecCCCe--EEEecCC-----------------------------
Q 006825          404 TSS-----EKGGRRSS-----------------SATDDSQDV--SFHGQER-----------------------------  430 (630)
Q Consensus       404 t~s-----~~gh~~~V-----------------sa~~~s~d~--l~Sgs~D-----------------------------  430 (630)
                      ++.     ..++...+                 .++.+++++  ++.++.|                             
T Consensus       139 ~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g  218 (719)
T 1z68_A          139 GDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAG  218 (719)
T ss_dssp             TSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTT
T ss_pred             CCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCC
Confidence            111     12222222                 368888887  6665533                             


Q ss_pred             -----cEEEEEeCCCCccc---ceeeeeEecccCcCEEEEEEccCCCEEEEEeCC----CcEEEEE----CcCCceeeee
Q 006825          431 -----VRVRQYGKSCKDLT---ALYKCQEIQAHNGSIWSIKFSLDGRYLASAGED----CVIHVWQ----VVESERKGEL  494 (630)
Q Consensus       431 -----g~VriWd~~~~el~---~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~D----gtIrVWD----l~tg~~~~~l  494 (630)
                           .+|++||+.+++..   .+.....+.+|...|..++|+||++++++....    ..|.+||    +.+++....+
T Consensus       219 ~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~  298 (719)
T 1z68_A          219 AKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQ  298 (719)
T ss_dssp             SCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGG
T ss_pred             CCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEE
Confidence                 28899999876531   111113356799999999999999888875432    2488899    7776654332


Q ss_pred             ecccccCcccceE-----EEEECCCCCEEEE--eeCCCeeeeecccccccccccccCccccccEEEeCCCCceEEeccCC
Q 006825          495 LEKQEDGHLNMLL-----LANGSPEPTSLSP--KHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHL  567 (630)
Q Consensus       495 ~~~~~~gh~~~V~-----svafSpdg~~las--gs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL~GHs  567 (630)
                      . ....+|...+.     .+.|+|||+.++.  ...++...+                     .+|++.+.....+..+.
T Consensus       299 ~-~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l---------------------~~~~~~~~~~~~lt~~~  356 (719)
T 1z68_A          299 E-HIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHI---------------------HYIKDTVENAIQITSGK  356 (719)
T ss_dssp             E-EEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEE---------------------EEESSCSTTCEECSCSS
T ss_pred             e-cccccCCceEccccCCccEECCCCCeEEEEEEccCCceEE---------------------EEEECCCCceEecccCc
Confidence            0 00035555555     7899999986554  334443311                     56666555567777777


Q ss_pred             CCEEEEEEcCC-CeEEEEECC-----CcEEEEeCCC--Cc-EEEEEe-----cCCceEEEE-cCCCcEEE
Q 006825          568 DDVLDLSWSKS-QHLLSSSMD-----KTVRLWHLSS--KT-CLKIFS-----HSDYDISLV-DRLMLRFA  622 (630)
Q Consensus       568 ~~V~sLafSPd-~~LaSgS~D-----gtVrIWDl~t--g~-~l~t~~-----H~~~V~sVa-s~~~~~lA  622 (630)
                      ..|..+.|+ + +.|+..+.+     ++++||.+..  +. ....+.     |...+..+. ++++..++
T Consensus       357 ~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s~dg~~l~  425 (719)
T 1z68_A          357 WEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISIGSYPPSKKCVTCHLRKERCQYYTASFSDYAKYYA  425 (719)
T ss_dssp             SCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEECSSSSCCEEESSTTTTTTTBCBEEEEECGGGSSEE
T ss_pred             eEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeCCCCCCCceeccCccCCCCCceEEEEECCCCCEEE
Confidence            788888877 7 766666554     8899998764  42 123332     444566665 44444443

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.60  E-value=1.1e-12  Score=136.41  Aligned_cols=251  Identities=10%  Similarity=0.001  Sum_probs=156.2

Q ss_pred             eeEEEEcCCCceEeeecceeeecCccceeEEEeec---ceEeecCC----CccEecccCCC--CceeE--EecCCccCCE
Q 006825          315 WKKVKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQ---NVEEGNKD----SFDLNNNGSSG--GGMKS--KKKGSWFKSI  383 (630)
Q Consensus       315 ~~~l~dv~TG~~lt~eef~~l~GHs~~V~~Lafs~---~laSgS~D----~tvr~vWD~~t--G~~~~--~lk~gH~~~V  383 (630)
                      +....+..+|+...+.   .+  |...+..|+|+|   .|++++.+    +++. +|++..  |+...  ... .+....
T Consensus        30 ~~~~~d~~~g~~~~~~---~~--~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~-~~~~~~~~g~~~~~~~~~-~~~~~p  102 (361)
T 3scy_A           30 YTFRFNEETGESLPLS---DA--EVANPSYLIPSADGKFVYSVNEFSKDQAAVS-AFAFDKEKGTLHLLNTQK-TMGADP  102 (361)
T ss_dssp             EEEEEETTTCCEEEEE---EE--ECSCCCSEEECTTSSEEEEEECCSSTTCEEE-EEEEETTTTEEEEEEEEE-CSSSCE
T ss_pred             EEEEEeCCCCCEEEee---cc--cCCCCceEEECCCCCEEEEEEccCCCCCcEE-EEEEeCCCCcEEEeeEec-cCCCCc
Confidence            3334455677655222   22  677788899998   57777775    7888 998765  54322  222 345566


Q ss_pred             EEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCc-ccceeeeeEec--------c
Q 006825          384 RTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKD-LTALYKCQEIQ--------A  454 (630)
Q Consensus       384 ~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~e-l~~~~~v~tL~--------g  454 (630)
                      ..+++  +|++++                            ++...++.|.+|++.... +..........        .
T Consensus       103 ~~~~~--dg~~l~----------------------------~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~  152 (361)
T 3scy_A          103 CYLTT--NGKNIV----------------------------TANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQ  152 (361)
T ss_dssp             EEEEE--CSSEEE----------------------------EEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTC
T ss_pred             EEEEE--CCCEEE----------------------------EEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCcccc
Confidence            66776  776554                            333457789999986432 21111111111        1


Q ss_pred             cCcCEEEEEEccCCCEEEEEe-CCCcEEEEECcCCce------eeee--ecccccCcccceEEEEECCCCCEEEEee-CC
Q 006825          455 HNGSIWSIKFSLDGRYLASAG-EDCVIHVWQVVESER------KGEL--LEKQEDGHLNMLLLANGSPEPTSLSPKH-LD  524 (630)
Q Consensus       455 Ht~~V~sVaFSpDG~~LASgS-~DgtIrVWDl~tg~~------~~~l--~~~~~~gh~~~V~svafSpdg~~lasgs-~D  524 (630)
                      +...+.+++|+|||++|+.++ .++.|++|++.....      +...  .......+......++|+|+|++++.+. .+
T Consensus       153 ~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~  232 (361)
T 3scy_A          153 TMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIG  232 (361)
T ss_dssp             SSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTT
T ss_pred             CCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCC
Confidence            234468999999999665555 589999999875432      1100  0000123345577899999999877766 57


Q ss_pred             CeeeeecccccccccccccCccccccEEEeC-CCCc--eEEe---ccCCCCEEEEEEcCC-CeEEEEEC--CCcEEEEeC
Q 006825          525 NHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKP--ICSF---QGHLDDVLDLSWSKS-QHLLSSSM--DKTVRLWHL  595 (630)
Q Consensus       525 g~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~--l~tL---~GHs~~V~sLafSPd-~~LaSgS~--DgtVrIWDl  595 (630)
                      +.|                       .+|++ +++.  +..+   ..+...+..++|+|+ ++|+.+..  +++|+||++
T Consensus       233 ~~v-----------------------~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~  289 (361)
T 3scy_A          233 GTV-----------------------IAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKV  289 (361)
T ss_dssp             CEE-----------------------EEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEE
T ss_pred             CeE-----------------------EEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEE
Confidence            788                       55555 3322  2222   334456789999999 77765554  589999999


Q ss_pred             C--CCc--EEEEEecCCceEEEE-cCCCcEEEEec
Q 006825          596 S--SKT--CLKIFSHSDYDISLV-DRLMLRFAYGA  625 (630)
Q Consensus       596 ~--tg~--~l~t~~H~~~V~sVa-s~~~~~lAsgs  625 (630)
                      .  +++  .+..+.....+.+++ +|++.+++++.
T Consensus       290 ~~~~g~~~~~~~~~~g~~~~~~~~spdg~~l~~~~  324 (361)
T 3scy_A          290 DETNGTLTKVGYQLTGIHPRNFIITPNGKYLLVAC  324 (361)
T ss_dssp             CTTTCCEEEEEEEECSSCCCEEEECTTSCEEEEEE
T ss_pred             cCCCCcEEEeeEecCCCCCceEEECCCCCEEEEEE
Confidence            5  455  444444555678888 88888776664

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.60  E-value=1.1e-14  Score=168.01  Aligned_cols=258  Identities=9%  Similarity=-0.077  Sum_probs=173.4

Q ss_pred             CceEeeecceeeecCccceeEEEeec---ceEeecCCCccEecccCCCCceeEEecCCccCC-----EEEEEEcCCCCeE
Q 006825          324 GRQLTIEEFEMCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKS-----IRTVASSVTGHKE  395 (630)
Q Consensus       324 G~~lt~eef~~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~-----V~sVAfSpdG~~l  395 (630)
                      ++.+|++++.. -++.+....++|+|   +++++  |++++ +||+.+|++...+. +|...     ...++|||||++|
T Consensus         2 ~~~~tl~~~~~-~~~~~~~~~~~w~~dg~~~~~~--~~~i~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~Spdg~~l   76 (740)
T 4a5s_A            2 RKTYTLTDYLK-NTYRLKLYSLRWISDHEYLYKQ--ENNIL-VFNAEYGNSSVFLE-NSTFDEFGHSINDYSISPDGQFI   76 (740)
T ss_dssp             CEECCHHHHHH-TCSCCCCCCEEECSSSEEEEEE--TTEEE-EEETTTCCEEEEEC-TTTTTTCCSCCCEEEECTTSSEE
T ss_pred             CCceeHHHHhc-CcccccccccEECCCCcEEEEc--CCcEE-EEECCCCceEEEEe-chhhhhhcccccceEECCCCCEE
Confidence            56677777642 23555677899998   56665  99999 99999999888777 66543     2447889999999


Q ss_pred             EeecCCC----------------CC---ccccCCcceEEEeecCCCe--EEEecCCcEEEEEeCCCCcccceeeeeEecc
Q 006825          396 RRSSDER----------------DT---SSEKGGRRSSSATDDSQDV--SFHGQERVRVRQYGKSCKDLTALYKCQEIQA  454 (630)
Q Consensus       396 asgS~D~----------------dt---~s~~gh~~~Vsa~~~s~d~--l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~g  454 (630)
                      +.++.++                .+   ..+.+|...+....+++++  ++.+ .+..|++|+..+++...+    +..+
T Consensus        77 ~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~~~SPdG~~la~~-~~~~i~~~~~~~~~~~~l----t~~g  151 (740)
T 4a5s_A           77 LLEYNYVKQWRHSYTASYDIYDLNKRQLITEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRI----TWTG  151 (740)
T ss_dssp             EEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEEC----CSCC
T ss_pred             EEEECCeeeEEEccceEEEEEECCCCcEEEcccCCCcceeeEECCCCCEEEEE-ECCeEEEEECCCCceEEE----cCCC
Confidence            9988742                11   2256667788999999999  5544 578999999987753211    2233


Q ss_pred             cCcCE-----------------EEEEEccCCCEEEEEeCCC------------------------------------cEE
Q 006825          455 HNGSI-----------------WSIKFSLDGRYLASAGEDC------------------------------------VIH  481 (630)
Q Consensus       455 Ht~~V-----------------~sVaFSpDG~~LASgS~Dg------------------------------------tIr  481 (630)
                      +...+                 ..+.|||||++||.++.|.                                    +|+
T Consensus       152 ~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~  231 (740)
T 4a5s_A          152 KEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFF  231 (740)
T ss_dssp             BTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEE
T ss_pred             CccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEE
Confidence            43333                 3489999999999986443                                    478


Q ss_pred             EEECcC---Cc--eeeeeec-ccccCcccceEEEEECCCCCEEEEeeCC----CeeeeecccccccccccccCccccccE
Q 006825          482 VWQVVE---SE--RKGELLE-KQEDGHLNMLLLANGSPEPTSLSPKHLD----NHLEKKRRGRSINRKSLSLDHMVVPET  551 (630)
Q Consensus       482 VWDl~t---g~--~~~~l~~-~~~~gh~~~V~svafSpdg~~lasgs~D----g~I~i~~~~~~~~~~s~s~d~~i~~~~  551 (630)
                      |||+.+   ++  ....+.. ....+|...+..++|+|||++++.....    ..|                       .
T Consensus       232 v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i-----------------------~  288 (740)
T 4a5s_A          232 VVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVM-----------------------D  288 (740)
T ss_dssp             EEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEE-----------------------E
T ss_pred             EEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEE-----------------------E
Confidence            888887   63  2222210 0012477789999999999976654322    134                       5


Q ss_pred             EEeC-CCC------ceEEe--ccCCCCEE-----EEEEcCC-CeEE-EEECC---CcEEEEeCCCCcEEEEEecCCceEE
Q 006825          552 VFAL-SDK------PICSF--QGHLDDVL-----DLSWSKS-QHLL-SSSMD---KTVRLWHLSSKTCLKIFSHSDYDIS  612 (630)
Q Consensus       552 Vwdl-sgk------~l~tL--~GHs~~V~-----sLafSPd-~~La-SgS~D---gtVrIWDl~tg~~l~t~~H~~~V~s  612 (630)
                      +|++ +++      .+.++  .+|...|.     .++|+|| +.|+ ..+.+   ..|++||+.++++...-...-.|..
T Consensus       289 ~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~~lT~g~~~v~~  368 (740)
T 4a5s_A          289 ICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTFITKGTWEVIG  368 (740)
T ss_dssp             EEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCEESCCSSSCEEE
T ss_pred             EEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCceEecccCCEEEEE
Confidence            6666 454      12223  56776665     7899999 7666 66643   4688899987776543335555665


Q ss_pred             EE
Q 006825          613 LV  614 (630)
Q Consensus       613 Va  614 (630)
                      +.
T Consensus       369 ~~  370 (740)
T 4a5s_A          369 IE  370 (740)
T ss_dssp             EE
T ss_pred             EE
Confidence            55

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.57  E-value=2.8e-13  Score=156.33  Aligned_cols=312  Identities=11%  Similarity=-0.017  Sum_probs=188.7

Q ss_pred             ceeecCCCCcccCCCccccccCCCCCcccccccEEEEECCCCcEEEEee---------------ecCCCce---------
Q 006825          260 SMSINGNGNYIGNSGEVVEDFDGNGTAGVAEQGCLIKNLDNGKEFVVNE---------------IQEDGTW---------  315 (630)
Q Consensus       260 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~LddG~~~~v~e---------------~~~dg~~---------  315 (630)
                      ++..+|||+++              +++  ++.+++|++++|+...+..               ...||..         
T Consensus        21 ~~~w~~dg~~~--------------~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~   84 (740)
T 4a5s_A           21 SLRWISDHEYL--------------YKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVK   84 (740)
T ss_dssp             CEEECSSSEEE--------------EEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEE
T ss_pred             ccEECCCCcEE--------------EEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCee
Confidence            58999999999              232  4578888888887544311               1345541         


Q ss_pred             ---------eEEEEcCCCceEeeecceeeecCccceeEEEeec---ceEeecCCCccEecccCCCCceeEEecCCccCCE
Q 006825          316 ---------KKVKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSI  383 (630)
Q Consensus       316 ---------~~l~dv~TG~~lt~eef~~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V  383 (630)
                               ..+||+.||+..      .+.+|...+...+|+|   .||.+ .|+.+. +|++.+|+..+....++...+
T Consensus        85 ~~r~~~~~~~~~~d~~~~~~~------~l~~~~~~~~~~~~SPdG~~la~~-~~~~i~-~~~~~~~~~~~lt~~g~~~~~  156 (740)
T 4a5s_A           85 QWRHSYTASYDIYDLNKRQLI------TEERIPNNTQWVTWSPVGHKLAYV-WNNDIY-VKIEPNLPSYRITWTGKEDII  156 (740)
T ss_dssp             CSSSCEEEEEEEEETTTTEEC------CSSCCCTTEEEEEECSSTTCEEEE-ETTEEE-EESSTTSCCEECCSCCBTTTE
T ss_pred             eEEEccceEEEEEECCCCcEE------EcccCCCcceeeEECCCCCEEEEE-ECCeEE-EEECCCCceEEEcCCCCccce
Confidence                     137888888754      4667888899999999   67776 468999 999999886654333554444


Q ss_pred             -----------------EEEEEcCCCCeEEeecCCCC-Ccc--------ccCCcceEEEeecCCCeEEEecCCcEEEEEe
Q 006825          384 -----------------RTVASSVTGHKERRSSDERD-TSS--------EKGGRRSSSATDDSQDVSFHGQERVRVRQYG  437 (630)
Q Consensus       384 -----------------~sVAfSpdG~~lasgS~D~d-t~s--------~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd  437 (630)
                                       ++++|||||++|+..+.|.. ...        ..++...+..+.+...+-  .....+|++||
T Consensus       157 ~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~--~~~~~~l~v~d  234 (740)
T 4a5s_A          157 YNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGA--VNPTVKFFVVN  234 (740)
T ss_dssp             EESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTS--CCCEEEEEEEE
T ss_pred             ecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcC--cCCeeEEEEEE
Confidence                             45999999999999876641 100        001333344444443330  12334799999


Q ss_pred             CCC---CcccceeeeeEec------ccCcCEEEEEEccCCCEEEEEe----CCCcEEEEECcCCc----eeeeeeccccc
Q 006825          438 KSC---KDLTALYKCQEIQ------AHNGSIWSIKFSLDGRYLASAG----EDCVIHVWQVVESE----RKGELLEKQED  500 (630)
Q Consensus       438 ~~~---~el~~~~~v~tL~------gHt~~V~sVaFSpDG~~LASgS----~DgtIrVWDl~tg~----~~~~l~~~~~~  500 (630)
                      +.+   ++...   ...+.      +|...|..++|+|||++++...    .+..|++||+.+++    +..... ....
T Consensus       235 ~~~~~~~~~~~---~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~-l~~~  310 (740)
T 4a5s_A          235 TDSLSSVTNAT---SIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQ-HIEM  310 (740)
T ss_dssp             TTSCCSSSCCC---EEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGC-EEEE
T ss_pred             CCCCCCCCcce---EEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEE-eeec
Confidence            987   62101   12232      5889999999999999776653    34579999999887    222110 0013


Q ss_pred             CcccceE-----EEEECCCCCEEE-Eee-CCCeeeeecccccccccccccCccccccEEEeCCCCceEEeccCCCCEEEE
Q 006825          501 GHLNMLL-----LANGSPEPTSLS-PKH-LDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDL  573 (630)
Q Consensus       501 gh~~~V~-----svafSpdg~~la-sgs-~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL~GHs~~V~sL  573 (630)
                      +|...+.     .+.|+|||+.|+ ..+ .++.-.+                     .+|+..+.....+......|..+
T Consensus       311 ~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l---------------------~~~~~~~~~~~~lT~g~~~v~~~  369 (740)
T 4a5s_A          311 STTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHI---------------------CYFQIDKKDCTFITKGTWEVIGI  369 (740)
T ss_dssp             CSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEE---------------------EEEETTCSSCEESCCSSSCEEEE
T ss_pred             cCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEE---------------------EEEECCCCceEecccCCEEEEEE
Confidence            3444433     678999999877 554 3332211                     66777666666666556667665


Q ss_pred             E-EcCCCeE-EEEEC----CCcEEEE--eCCCCcEEEEEe-----cCCceEEEE-cCCCcEEEE
Q 006825          574 S-WSKSQHL-LSSSM----DKTVRLW--HLSSKTCLKIFS-----HSDYDISLV-DRLMLRFAY  623 (630)
Q Consensus       574 a-fSPd~~L-aSgS~----DgtVrIW--Dl~tg~~l~t~~-----H~~~V~sVa-s~~~~~lAs  623 (630)
                      . |. ++.| .++..    -+...||  ++..+.....+.     ....+..+. ++++..++.
T Consensus       370 ~~~d-~~~i~f~~~~~~~~~~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~~~~~S~dg~~~~~  432 (740)
T 4a5s_A          370 EALT-SDYLYYISNEYKGMPGGRNLYKIQLIDYTKVTCLSCELNPERCQYYSVSFSKEAKYYQL  432 (740)
T ss_dssp             EEEC-SSEEEEEESCGGGCTTCBEEEEEETTEEEEEEESSTTTSTTTBCBEEEEECTTSSEEEE
T ss_pred             EEEe-CCEEEEEEecCCCCCceeEEEEEECCCCCcceeeccccCCCCCceEEEEECCCCCEEEE
Confidence            4 33 3444 44444    2334455  444433322333     123455555 666655543

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.57  E-value=4.3e-13  Score=139.92  Aligned_cols=259  Identities=6%  Similarity=-0.088  Sum_probs=159.6

Q ss_pred             EEEcCCCceEeeecceeeecCccceeEEEeec---ceEeecCCCccEecccCCCCceeEEecCCccCCEEEE--EEcCCC
Q 006825          318 VKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTV--ASSVTG  392 (630)
Q Consensus       318 l~dv~TG~~lt~eef~~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sV--AfSpdG  392 (630)
                      ++++.+|+..     ....+|...+..++|+|   .|+.++.+..+. +||+.+|+...... .+...+...  +++|+|
T Consensus        64 ~~d~~~g~~~-----~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~-~~d~~~g~~~~~~~-~~~~~~~~~~~~~~~dg  136 (388)
T 3pe7_A           64 LLDLNTQVAT-----QLTEGRGDNTFGGFLSPDDDALFYVKDGRNLM-RVDLATLEENVVYQ-VPAEWVGYGTWVANSDC  136 (388)
T ss_dssp             EEETTTCEEE-----ECCCSSCBCSSSCEECTTSSEEEEEETTTEEE-EEETTTCCEEEEEE-CCTTEEEEEEEEECTTS
T ss_pred             EEeCCCCceE-----EeeeCCCCCccceEEcCCCCEEEEEeCCCeEE-EEECCCCcceeeee-chhhcccccceeECCCC
Confidence            4455555544     33445666666678988   688888899999 99999998877666 565555443  358999


Q ss_pred             CeEEeecCCCCC-ccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEcc-CCCE
Q 006825          393 HKERRSSDERDT-SSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSL-DGRY  470 (630)
Q Consensus       393 ~~lasgS~D~dt-~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSp-DG~~  470 (630)
                      ++++....+... ..........        ..+....+..|++||+.+++.      ..+..|...+..++|+| ||++
T Consensus       137 ~~l~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~l~~~d~~~g~~------~~l~~~~~~~~~~~~sp~dg~~  202 (388)
T 3pe7_A          137 TKLVGIEIRREDWVPLTDWKKFH--------EFYFTKPCCRLMRVDLKTGES------TVILQENQWLGHPIYRPYDDST  202 (388)
T ss_dssp             SEEEEEEEEGGGCCCCCSHHHHH--------HHGGGCCCEEEEEEETTTCCE------EEEEEESSCEEEEEEETTEEEE
T ss_pred             CeeccccccCcccccccccchhh--------hhhccCCcceEEEEECCCCce------EEeecCCccccccEECCCCCCE
Confidence            988642211100 0000000000        011233457899999987753      44556778899999999 9999


Q ss_pred             EEEEeCC------CcEEEEECcCCceeeeeecccccCcc-cceEEEEECCCCCEEEEeeCC-C----eeeeecccccccc
Q 006825          471 LASAGED------CVIHVWQVVESERKGELLEKQEDGHL-NMLLLANGSPEPTSLSPKHLD-N----HLEKKRRGRSINR  538 (630)
Q Consensus       471 LASgS~D------gtIrVWDl~tg~~~~~l~~~~~~gh~-~~V~svafSpdg~~lasgs~D-g----~I~i~~~~~~~~~  538 (630)
                      |+..+.+      ..|.+||+..+.. ..+    ...+. ..+..++|+|||+.|+..+.. +    .|           
T Consensus       203 l~~~~~~~~~~~~~~l~~~d~~~~~~-~~l----~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l-----------  266 (388)
T 3pe7_A          203 VAFCHEGPHDLVDARMWLINEDGTNM-RKV----KTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFI-----------  266 (388)
T ss_dssp             EEEEECSCTTTSSCSEEEEETTSCCC-EES----CCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEE-----------
T ss_pred             EEEEEecCCCCCcceEEEEeCCCCce-EEe----eeCCCCcccccceECCCCCEEEEEecCCCCCcceE-----------
Confidence            9888764      3677788765443 332    12222 357788999999977664432 2    14           


Q ss_pred             cccccCccccccEEEeC-CCC--ceEEeccCCCC---EEEEEEcCC-CeEEEE---------ECCCcEEEEeCCCCcEEE
Q 006825          539 KSLSLDHMVVPETVFAL-SDK--PICSFQGHLDD---VLDLSWSKS-QHLLSS---------SMDKTVRLWHLSSKTCLK  602 (630)
Q Consensus       539 ~s~s~d~~i~~~~Vwdl-sgk--~l~tL~GHs~~---V~sLafSPd-~~LaSg---------S~DgtVrIWDl~tg~~l~  602 (630)
                                  .+|++ +++  .+..+.++...   ...++|+|| ++|+..         ..+..|++||+.+++...
T Consensus       267 ------------~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~  334 (388)
T 3pe7_A          267 ------------YSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQHR  334 (388)
T ss_dssp             ------------EEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTEEEE
T ss_pred             ------------EEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCceEE
Confidence                        66776 333  23333331111   112379999 666643         557799999999987654


Q ss_pred             EEecCC-----------ceEEEE-cCCCcEEEEec
Q 006825          603 IFSHSD-----------YDISLV-DRLMLRFAYGA  625 (630)
Q Consensus       603 t~~H~~-----------~V~sVa-s~~~~~lAsgs  625 (630)
                      ...|..           .+.+++ +|++..+++.+
T Consensus       335 l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s  369 (388)
T 3pe7_A          335 VARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTS  369 (388)
T ss_dssp             EEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEE
T ss_pred             eccccCcccccccccccCCCCccCCCCCCEEEEEe
Confidence            444655           467777 88888777664

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.56  E-value=1.8e-12  Score=134.53  Aligned_cols=228  Identities=12%  Similarity=0.053  Sum_probs=169.3

Q ss_pred             cceeEEEeec---ceEeecCC------------------------CccEecccCCCCceeEEecCCccCCEEEEEEcCCC
Q 006825          340 PIVQELMRRQ---NVEEGNKD------------------------SFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTG  392 (630)
Q Consensus       340 ~~V~~Lafs~---~laSgS~D------------------------~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG  392 (630)
                      ..|..|++.|   .+++.+.+                        +++. +||..+|+.+..+..++......||++++|
T Consensus        24 ~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~d~~~g~~~~~~~~~~~~~p~gia~d~~g  102 (329)
T 3fvz_A           24 GQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTIL-VIDPNNAEILQSSGKNLFYLPHGLSIDTDG  102 (329)
T ss_dssp             SCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEE-EECTTTCCEEEEECTTTCSSEEEEEECTTS
T ss_pred             CCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEE-EEECCCCeEEeccCCCccCCceEEEECCCC
Confidence            5578888887   45666666                        3688 999999998877765788889999999998


Q ss_pred             CeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEe---------cccCcCEEEEE
Q 006825          393 HKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEI---------QAHNGSIWSIK  463 (630)
Q Consensus       393 ~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL---------~gHt~~V~sVa  463 (630)
                      ++++                             +...+.+|++|+......    .+.++         .++......|+
T Consensus       103 ~l~v-----------------------------~d~~~~~v~~~~~~g~~~----~~~~~~~~~~~g~~~~~~~~P~~ia  149 (329)
T 3fvz_A          103 NYWV-----------------------------TDVALHQVFKLDPHSKEG----PLLILGRSMQPGSDQNHFCQPTDVA  149 (329)
T ss_dssp             CEEE-----------------------------EETTTTEEEEECTTCSSC----CSEEESBTTBCCCSTTCCSSEEEEE
T ss_pred             CEEE-----------------------------EECCCCEEEEEeCCCCeE----EEEEecccCCCCCCccccCCCcEEE
Confidence            7554                             334566899998765421    12333         45666899999


Q ss_pred             Ecc-CCCEEEEEe-CCCcEEEEECcCCceeeeeecccc-----cCcccceEEEEECCC-CCEEEEeeCCCeeeeeccccc
Q 006825          464 FSL-DGRYLASAG-EDCVIHVWQVVESERKGELLEKQE-----DGHLNMLLLANGSPE-PTSLSPKHLDNHLEKKRRGRS  535 (630)
Q Consensus       464 FSp-DG~~LASgS-~DgtIrVWDl~tg~~~~~l~~~~~-----~gh~~~V~svafSpd-g~~lasgs~Dg~I~i~~~~~~  535 (630)
                      |+| +|+++++.+ .++.|++|+ .++..+..+.....     .++......++++|+ +.++++...++.|        
T Consensus       150 ~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I--------  220 (329)
T 3fvz_A          150 VEPSTGAVFVSDGYCNSRIVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRI--------  220 (329)
T ss_dssp             ECTTTCCEEEEECSSCCEEEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEE--------
T ss_pred             EeCCCCeEEEEeCCCCCeEEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEE--------
Confidence            999 899999887 699999999 46666555421110     134455789999998 8888888888888        


Q ss_pred             ccccccccCccccccEEEeCC-CCceEEec--cCCCCEEEEEEcCC-------CeEEEEECCCcEEEEeCCCCcEEEEEe
Q 006825          536 INRKSLSLDHMVVPETVFALS-DKPICSFQ--GHLDDVLDLSWSKS-------QHLLSSSMDKTVRLWHLSSKTCLKIFS  605 (630)
Q Consensus       536 ~~~~s~s~d~~i~~~~Vwdls-gk~l~tL~--GHs~~V~sLafSPd-------~~LaSgS~DgtVrIWDl~tg~~l~t~~  605 (630)
                                     .+|+.. |+.+.++.  ++...+..++|+|.       ..+++...+.+|++|++.+++.+.++.
T Consensus       221 ---------------~~~~~~~G~~~~~~~~~~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~  285 (329)
T 3fvz_A          221 ---------------QCFKTDTKEFVREIKHASFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFK  285 (329)
T ss_dssp             ---------------EEEETTTCCEEEEECCTTTTTCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEEC
T ss_pred             ---------------EEEECCCCcEEEEEeccccCCCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEc
Confidence                           788885 88888874  56678999999993       222233345699999999999999983


Q ss_pred             ----cCCceEEEE-cCCCcEEEEec
Q 006825          606 ----HSDYDISLV-DRLMLRFAYGA  625 (630)
Q Consensus       606 ----H~~~V~sVa-s~~~~~lAsgs  625 (630)
                          +...+..|+ ++++..++++.
T Consensus       286 ~~~~~~~~p~~ia~~~dG~lyvad~  310 (329)
T 3fvz_A          286 PVRKHFDMPHDIVASEDGTVYIGDA  310 (329)
T ss_dssp             CSSSCCSSEEEEEECTTSEEEEEES
T ss_pred             CCCCccCCeeEEEECCCCCEEEEEC
Confidence                778899999 88887776664

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.55  E-value=9.8e-12  Score=124.91  Aligned_cols=198  Identities=11%  Similarity=0.084  Sum_probs=145.5

Q ss_pred             cCccceeEEEee-c---ceEeec-CCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccccCCc
Q 006825          337 GHSPIVQELMRR-Q---NVEEGN-KDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGR  411 (630)
Q Consensus       337 GHs~~V~~Lafs-~---~laSgS-~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~  411 (630)
                      +|...+..|++. +   .+++.. .+..++ +|| .+|+.+.++...+...+..++++++|+++++              
T Consensus        74 ~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~-~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~--------------  137 (286)
T 1q7f_A           74 SQLLYPNRVAVVRNSGDIIVTERSPTHQIQ-IYN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVV--------------  137 (286)
T ss_dssp             TCBSSEEEEEEETTTTEEEEEECGGGCEEE-EEC-TTSCEEEEECTTTCSCEEEEEECTTSCEEEE--------------
T ss_pred             ccccCceEEEEEcCCCeEEEEcCCCCCEEE-EEC-CCCcEEEEecCccCCCceEEEEeCCCCEEEE--------------
Confidence            455678889984 4   334432 378899 999 6788877776567778999999999875543              


Q ss_pred             ceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEec--ccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCc
Q 006825          412 RSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQ--AHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESE  489 (630)
Q Consensus       412 ~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~--gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~  489 (630)
                                     ...++.|++|+....      .+..+.  ++...+..|+|+++|+++++...++.|++|+.. ++
T Consensus       138 ---------------~~~~~~i~~~~~~g~------~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~  195 (286)
T 1q7f_A          138 ---------------ECKVMRVIIFDQNGN------VLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYE-GQ  195 (286)
T ss_dssp             ---------------ETTTTEEEEECTTSC------EEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETT-CC
T ss_pred             ---------------ECCCCEEEEEcCCCC------EEEEeCCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcCC-CC
Confidence                           334567899986533      123332  566679999999999999988889999999974 44


Q ss_pred             eeeeeecccccCcccceEEEEECCCCCEEEEeeCCC-eeeeecccccccccccccCccccccEEEeCCCCceEEeccCCC
Q 006825          490 RKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDN-HLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLD  568 (630)
Q Consensus       490 ~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg-~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL~GHs~  568 (630)
                      .+..+.   ..++...+..++++++|.++++...++ .|                       .+|+..++.+..+..+..
T Consensus       196 ~~~~~~---~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i-----------------------~~~~~~g~~~~~~~~~~~  249 (286)
T 1q7f_A          196 YLRQIG---GEGITNYPIGVGINSNGEILIADNHNNFNL-----------------------TIFTQDGQLISALESKVK  249 (286)
T ss_dssp             EEEEES---CTTTSCSEEEEEECTTCCEEEEECSSSCEE-----------------------EEECTTSCEEEEEEESSC
T ss_pred             EEEEEc---cCCccCCCcEEEECCCCCEEEEeCCCCEEE-----------------------EEECCCCCEEEEEcccCC
Confidence            444431   123446788999999999998887775 78                       778877777777766543


Q ss_pred             --CEEEEEEcCC-CeEEEEECCCcEEEEeCCCCc
Q 006825          569 --DVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKT  599 (630)
Q Consensus       569 --~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg~  599 (630)
                        .+.+++|+|+ .++++ +.|++|++|++....
T Consensus       250 ~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~~  282 (286)
T 1q7f_A          250 HAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQLA  282 (286)
T ss_dssp             CSCEEEEEEETTTEEEEE-ETTTEEEEEECSCCC
T ss_pred             CCcceeEEECCCCcEEEE-CCCCeEEEEEccccc
Confidence              4789999999 55555 689999999986543

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.53  E-value=1.3e-12  Score=137.29  Aligned_cols=259  Identities=11%  Similarity=-0.032  Sum_probs=156.8

Q ss_pred             EEEcCCCceEeeecceeeecCccceeEEEeec---ceEeecCCCccEecccCC-CCceeEEecCCccCCEEEEEEcCCCC
Q 006825          318 VKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSS-GGGMKSKKKGSWFKSIRTVASSVTGH  393 (630)
Q Consensus       318 l~dv~TG~~lt~eef~~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~-tG~~~~~lk~gH~~~V~sVAfSpdG~  393 (630)
                      -.+..+|+.-.+..  ...++...+..|+|+|   .|++++.+ ++. +|++. +|+........-.+.+..++|+|||+
T Consensus        20 ~~d~~~g~l~~~~~--~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~-~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~   95 (365)
T 1jof_A           20 QFDDEKLTCKLIKR--TEIPQDEPISWMTFDHERKNIYGAAMK-KWS-SFAVKSPTEIVHEASHPIGGHPRANDADTNTR   95 (365)
T ss_dssp             EEETTTTEEEEEEE--EECCTTCCCSEEEECTTSSEEEEEEBT-EEE-EEEEEETTEEEEEEEEECCSSGGGGCTTSCCE
T ss_pred             EEECCCCCEEEeeE--EccCCCCCCcEEEECCCCCEEEEEccc-eEE-EEEECCCCCEEEeeEeecCCCCccEEECCCCC
Confidence            34556775431111  1123445678899998   58888888 888 99997 88765433210012345589999998


Q ss_pred             e--EEeecCCCCCccccCCcceEEEeecCCCeEEEec----CCcEEEEEeCCC-CcccceeeeeEec-ccCcCEEEEEEc
Q 006825          394 K--ERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQ----ERVRVRQYGKSC-KDLTALYKCQEIQ-AHNGSIWSIKFS  465 (630)
Q Consensus       394 ~--lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs----~Dg~VriWd~~~-~el~~~~~v~tL~-gHt~~V~sVaFS  465 (630)
                      +  +++++.++                    ....+.    .++++.+|++.. +++..  .+..+. .+...+.+++|+
T Consensus        96 ~l~~~~~~~~~--------------------~~~~~~~~~~~~g~v~v~~~~~~g~~~~--~~~~~~~~~~~~~~~~~~s  153 (365)
T 1jof_A           96 AIFLLAAKQPP--------------------YAVYANPFYKFAGYGNVFSVSETGKLEK--NVQNYEYQENTGIHGMVFD  153 (365)
T ss_dssp             EEEEEECSSTT--------------------CCEEEEEESSSCCEEEEEEECTTCCEEE--EEEEEECCTTCCEEEEEEC
T ss_pred             EEEEEEecCCc--------------------ceeccceeecCCceEEEEccCCCCcCcc--eEeeEEeCCCCcceEEEEC
Confidence            4  33322100                    000111    577899999863 33211  112221 356679999999


Q ss_pred             cCCCEEEEEeC-CCcEEEEECc-CCceeeeeecccccCcccceEEEEECCCCCEEEEeeC-CCeeeeecccccccccccc
Q 006825          466 LDGRYLASAGE-DCVIHVWQVV-ESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHL-DNHLEKKRRGRSINRKSLS  542 (630)
Q Consensus       466 pDG~~LASgS~-DgtIrVWDl~-tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~-Dg~I~i~~~~~~~~~~s~s  542 (630)
                      |||++|+++.. ++.|++|++. +++..... ......|...+..++|+|+|++++++.. ++.|.              
T Consensus       154 pdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~-~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~--------------  218 (365)
T 1jof_A          154 PTETYLYSADLTANKLWTHRKLASGEVELVG-SVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRIC--------------  218 (365)
T ss_dssp             TTSSEEEEEETTTTEEEEEEECTTSCEEEEE-EEECSSTTCCEEEEEECTTSSEEEEEETTTTEEE--------------
T ss_pred             CCCCEEEEEcCCCCEEEEEEECCCCCEEEee-eEecCCCCCCCCEeEECCCCCEEEEEECCCCeEE--------------
Confidence            99998887764 6899999998 66543211 0001123456889999999998877664 56774              


Q ss_pred             cCccccccEEEeC---CCCce---EE---e----ccCCC------CEEEEE-EcCC-CeEEEEECC-C-----cEEEEeC
Q 006825          543 LDHMVVPETVFAL---SDKPI---CS---F----QGHLD------DVLDLS-WSKS-QHLLSSSMD-K-----TVRLWHL  595 (630)
Q Consensus       543 ~d~~i~~~~Vwdl---sgk~l---~t---L----~GHs~------~V~sLa-fSPd-~~LaSgS~D-g-----tVrIWDl  595 (630)
                               +|++   +++..   ..   +    .+|..      .+..++ |+|| ++|+++..+ .     +|++|++
T Consensus       219 ---------v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~  289 (365)
T 1jof_A          219 ---------EYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKL  289 (365)
T ss_dssp             ---------EEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEE
T ss_pred             ---------EEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEE
Confidence                     4432   23321   11   1    23333      588999 9999 777766543 3     8999999


Q ss_pred             C-CCcEEE---EEe-cCCceEEEE-cC---CCcEEEEecc
Q 006825          596 S-SKTCLK---IFS-HSDYDISLV-DR---LMLRFAYGAF  626 (630)
Q Consensus       596 ~-tg~~l~---t~~-H~~~V~sVa-s~---~~~~lAsgs~  626 (630)
                      . +++...   .+. +...+..++ +|   ++.+++++..
T Consensus       290 ~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~  329 (365)
T 1jof_A          290 RDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDD  329 (365)
T ss_dssp             CTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECS
T ss_pred             CCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEc
Confidence            6 677554   233 455556666 67   6777776643

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.52  E-value=4.6e-12  Score=134.13  Aligned_cols=259  Identities=8%  Similarity=0.004  Sum_probs=154.8

Q ss_pred             eeEEEEcCCCceEeeecceeeecCccceeEEEeec---ceEeec----------CCCccEecccCCCCceeEEecCC---
Q 006825          315 WKKVKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQ---NVEEGN----------KDSFDLNNNGSSGGGMKSKKKGS---  378 (630)
Q Consensus       315 ~~~l~dv~TG~~lt~eef~~l~GHs~~V~~Lafs~---~laSgS----------~D~tvr~vWD~~tG~~~~~lk~g---  378 (630)
                      ...++|..||+.+     .++..+...  .++|+|   .|..++          .+++|. +||..+++.+.++..+   
T Consensus        32 ~v~v~D~~t~~~~-----~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~-v~d~~t~~~~~~i~~~~~~  103 (361)
T 2oiz_A           32 RVHVYDYTNGKFL-----GMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVE-VWDADKLTFEKEISLPPKR  103 (361)
T ss_dssp             EEEEEETTTCCEE-----EEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEE-EEETTTCCEEEEEEECTTB
T ss_pred             eEEEEECCCCeEE-----EEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEE-EEECcCCcEEEEEEcCccc
Confidence            4668888898877     455555444  899999   444443          467899 9999999988877632   


Q ss_pred             --ccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeE-eccc
Q 006825          379 --WFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQE-IQAH  455 (630)
Q Consensus       379 --H~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~t-L~gH  455 (630)
                        +......++|+|||++|..++                           ...+.+|.+||..+++.     +.+ +. +
T Consensus       104 ~~~g~~p~~i~~spdg~~l~v~n---------------------------~~~~~~v~v~d~~~~~~-----~~~~i~-~  150 (361)
T 2oiz_A          104 VQGLNYDGLFRQTTDGKFIVLQN---------------------------ASPATSIGIVDVAKGDY-----VEDVTA-A  150 (361)
T ss_dssp             CCBCCCGGGEEECTTSSEEEEEE---------------------------ESSSEEEEEEETTTTEE-----EEEEGG-G
T ss_pred             cccCCCcceEEECCCCCEEEEEC---------------------------CCCCCeEEEEECCCCcE-----EEEEec-C
Confidence              234456789999999875321                           11256799999887642     334 32 2


Q ss_pred             CcCEEEEEEccCC-CEEEEEeCCCcEEEEECcC-Cceeeeeec-ccccCcccceEEEEECCCCCEEEEeeCCCeeeeecc
Q 006825          456 NGSIWSIKFSLDG-RYLASAGEDCVIHVWQVVE-SERKGELLE-KQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRR  532 (630)
Q Consensus       456 t~~V~sVaFSpDG-~~LASgS~DgtIrVWDl~t-g~~~~~l~~-~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~  532 (630)
                      . ..+.+.+.|++ ..+++.+.||++.+|++.. ++....... ..+......+ .+.+++++..++..+.++.+.+++.
T Consensus       151 ~-~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~v~v~d~  228 (361)
T 2oiz_A          151 A-GCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPI-FIAPALDKDKAHFVSYYGNVYSADF  228 (361)
T ss_dssp             T-TEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCB-CSCCEECSSEEEEEBTTSEEEEEEC
T ss_pred             C-CcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCce-EEEecccCCEEEEEeCCCeEEEEEe
Confidence            1 22335667765 5677778888888887754 332211000 0001111111 1111223322222223333333222


Q ss_pred             ccc------------------------ccccccccCcc--c----------------cccEEEeC-CCCceEEeccCCCC
Q 006825          533 GRS------------------------INRKSLSLDHM--V----------------VPETVFAL-SDKPICSFQGHLDD  569 (630)
Q Consensus       533 ~~~------------------------~~~~s~s~d~~--i----------------~~~~Vwdl-sgk~l~tL~GHs~~  569 (630)
                      ...                        .....++.+..  +                ..-.+|++ +++.+.++..|.  
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--  306 (361)
T 2oiz_A          229 SGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--  306 (361)
T ss_dssp             SSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--
T ss_pred             cCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--
Confidence            100                        00001111100  0                00156787 788899998887  


Q ss_pred             EEEEEEcCC-CeEEEEECCCcEEEEeCCCC--cEEEEEe-cCCceEEEE-cCCCc
Q 006825          570 VLDLSWSKS-QHLLSSSMDKTVRLWHLSSK--TCLKIFS-HSDYDISLV-DRLML  619 (630)
Q Consensus       570 V~sLafSPd-~~LaSgS~DgtVrIWDl~tg--~~l~t~~-H~~~V~sVa-s~~~~  619 (630)
                      +..|+|+|+ ++|++++. ++|.+||+.++  ++++++. +....+.++ .|++.
T Consensus       307 p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p~G~  360 (361)
T 2oiz_A          307 ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEPKLLRTIEGAAEASLQVQFHPVGG  360 (361)
T ss_dssp             CCEEEEETTTTEEEEECS-SCEEEEECSSSSCEEEEEETTSCSSEEEEEECCCSC
T ss_pred             eeEEEECCCCCEEEEeCC-CeEEEEECCCCcceeeEEeccCCCCcEEEEecCCCC
Confidence            999999999 88887776 99999999999  9999984 777778887 77654

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.51  E-value=2.8e-11  Score=121.54  Aligned_cols=226  Identities=7%  Similarity=0.009  Sum_probs=162.7

Q ss_pred             ecCccceeEEEeec---ceEeecCCCccEecccCCCCceeEEecC-----CccCCEEEEEE-cCCCCeEEeecCCCCCcc
Q 006825          336 VGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKKKG-----SWFKSIRTVAS-SVTGHKERRSSDERDTSS  406 (630)
Q Consensus       336 ~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~lk~-----gH~~~V~sVAf-SpdG~~lasgS~D~dt~s  406 (630)
                      .||-..+..|++.+   .+++.+.++.|. +||.. |+.+..+..     +|...+..+++ .++|.++++.        
T Consensus        26 ~g~~~~p~~v~~~~~g~l~v~~~~~~~i~-~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~--------   95 (286)
T 1q7f_A           26 EGQFTEPSGVAVNAQNDIIVADTNNHRIQ-IFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTE--------   95 (286)
T ss_dssp             TTCBSCEEEEEECTTCCEEEEEGGGTEEE-EECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEE--------
T ss_pred             CCccCCCceEEECCCCCEEEEECCCCEEE-EECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEc--------
Confidence            35556778888887   466777889999 99986 666665531     46677888888 4666544321        


Q ss_pred             ccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEec-ccCcCEEEEEEccCCCEEEEEeCCCcEEEEEC
Q 006825          407 EKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQ-AHNGSIWSIKFSLDGRYLASAGEDCVIHVWQV  485 (630)
Q Consensus       407 ~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~-gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl  485 (630)
                                          ...++.|++|+....      .+..+. .+...+..|+|+++|+++++...++.|.+|+.
T Consensus        96 --------------------~~~~~~i~~~d~~g~------~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~  149 (286)
T 1q7f_A           96 --------------------RSPTHQIQIYNQYGQ------FVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQ  149 (286)
T ss_dssp             --------------------CGGGCEEEEECTTSC------EEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECT
T ss_pred             --------------------CCCCCEEEEECCCCc------EEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcC
Confidence                                112567999985432      223332 35567899999999999998888999999996


Q ss_pred             cCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeCCCCceEEecc
Q 006825          486 VESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQG  565 (630)
Q Consensus       486 ~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL~G  565 (630)
                      . ++....+.   ..++...+..+++++++.++++...++.|                       .+|+..++.+.++..
T Consensus       150 ~-g~~~~~~~---~~~~~~~p~~i~~~~~g~l~v~~~~~~~i-----------------------~~~~~~g~~~~~~~~  202 (286)
T 1q7f_A          150 N-GNVLHKFG---CSKHLEFPNGVVVNDKQEIFISDNRAHCV-----------------------KVFNYEGQYLRQIGG  202 (286)
T ss_dssp             T-SCEEEEEE---CTTTCSSEEEEEECSSSEEEEEEGGGTEE-----------------------EEEETTCCEEEEESC
T ss_pred             C-CCEEEEeC---CCCccCCcEEEEECCCCCEEEEECCCCEE-----------------------EEEcCCCCEEEEEcc
Confidence            4 45444431   12445668899999999988888778888                       777777777777754


Q ss_pred             C--CCCEEEEEEcCC-CeEEEEECCC-cEEEEeCCCCcEEEEEe-cC--CceEEEE-cCCCcEEEEec
Q 006825          566 H--LDDVLDLSWSKS-QHLLSSSMDK-TVRLWHLSSKTCLKIFS-HS--DYDISLV-DRLMLRFAYGA  625 (630)
Q Consensus       566 H--s~~V~sLafSPd-~~LaSgS~Dg-tVrIWDl~tg~~l~t~~-H~--~~V~sVa-s~~~~~lAsgs  625 (630)
                      +  ...+..|+++++ .++++...++ .|++||. +++.+..+. +.  ..+.+++ ++++..++++.
T Consensus       203 ~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs~~  269 (286)
T 1q7f_A          203 EGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALMDDGSVVLASK  269 (286)
T ss_dssp             TTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEETTTEEEEEET
T ss_pred             CCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEcccCCCCcceeEEECCCCcEEEECC
Confidence            3  467899999999 7778887786 9999995 677888886 43  3477888 77777776653

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.49  E-value=2e-12  Score=134.82  Aligned_cols=222  Identities=9%  Similarity=-0.069  Sum_probs=151.2

Q ss_pred             EEEEcCCCceEeeecceeeecCccceeE-----EEeec---ceEeecC-CCc--cEecccCCCCceeEEecCCccCCEEE
Q 006825          317 KVKEVGTGRQLTIEEFEMCVGHSPIVQE-----LMRRQ---NVEEGNK-DSF--DLNNNGSSGGGMKSKKKGSWFKSIRT  385 (630)
Q Consensus       317 ~l~dv~TG~~lt~eef~~l~GHs~~V~~-----Lafs~---~laSgS~-D~t--vr~vWD~~tG~~~~~lk~gH~~~V~s  385 (630)
                      ...+..+|..+     .++..|...+..     .+|+|   .|+.++. +++  +. +||+.+|+...... +|...+..
T Consensus        13 ~~~~~~~g~~~-----~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~-~~d~~~g~~~~lt~-~~~~~~~~   85 (388)
T 3pe7_A           13 TYQDASTGAQV-----TRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYY-LLDLNTQVATQLTE-GRGDNTFG   85 (388)
T ss_dssp             EEECTTTCCEE-----EECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEE-EEETTTCEEEECCC-SSCBCSSS
T ss_pred             EEecCCCCcce-----EEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEE-EEeCCCCceEEeee-CCCCCccc
Confidence            45677788877     667777665555     78998   5777776 664  66 77998888776665 77777767


Q ss_pred             EEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEE--
Q 006825          386 VASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIK--  463 (630)
Q Consensus       386 VAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVa--  463 (630)
                      ++|+|||++|+..+                             .+..|++||+.+++.     ...+..+...+....  
T Consensus        86 ~~~spdg~~l~~~~-----------------------------~~~~l~~~d~~~g~~-----~~~~~~~~~~~~~~~~~  131 (388)
T 3pe7_A           86 GFLSPDDDALFYVK-----------------------------DGRNLMRVDLATLEE-----NVVYQVPAEWVGYGTWV  131 (388)
T ss_dssp             CEECTTSSEEEEEE-----------------------------TTTEEEEEETTTCCE-----EEEEECCTTEEEEEEEE
T ss_pred             eEEcCCCCEEEEEe-----------------------------CCCeEEEEECCCCcc-----eeeeechhhccccccee
Confidence            89999999886432                             345799999988753     233445555554444  


Q ss_pred             EccCCCEEEEE----------------------eCCCcEEEEECcCCceeeeeecccccCcccceEEEEECC-CCCEEEE
Q 006825          464 FSLDGRYLASA----------------------GEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSP-EPTSLSP  520 (630)
Q Consensus       464 FSpDG~~LASg----------------------S~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSp-dg~~las  520 (630)
                      ++|+|++|+..                      ..+..|.+||+.+++....      ..+...+..++|+| +|+.|+.
T Consensus       132 ~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l------~~~~~~~~~~~~sp~dg~~l~~  205 (388)
T 3pe7_A          132 ANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVI------LQENQWLGHPIYRPYDDSTVAF  205 (388)
T ss_dssp             ECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEE------EEESSCEEEEEEETTEEEEEEE
T ss_pred             ECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEe------ecCCccccccEECCCCCCEEEE
Confidence            48999998743                      3457899999998864433      23455688999999 9998887


Q ss_pred             eeCCCeeeeecccccccccccccCccccccEEEeCCCCceEEeccCC--CCEEEEEEcCC-CeEEEEEC--CC---cEEE
Q 006825          521 KHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHL--DDVLDLSWSKS-QHLLSSSM--DK---TVRL  592 (630)
Q Consensus       521 gs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL~GHs--~~V~sLafSPd-~~LaSgS~--Dg---tVrI  592 (630)
                      ...+..    ...          ...+   .+++..+..+..+..+.  ..+..++|+|| ++|+..+.  ++   .|++
T Consensus       206 ~~~~~~----~~~----------~~~l---~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~  268 (388)
T 3pe7_A          206 CHEGPH----DLV----------DARM---WLINEDGTNMRKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYS  268 (388)
T ss_dssp             EECSCT----TTS----------SCSE---EEEETTSCCCEESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEE
T ss_pred             EEecCC----CCC----------cceE---EEEeCCCCceEEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEE
Confidence            765320    000          0000   45566666666666665  35888999999 76665443  22   3999


Q ss_pred             EeCCCCcEEE
Q 006825          593 WHLSSKTCLK  602 (630)
Q Consensus       593 WDl~tg~~l~  602 (630)
                      ||+.+++...
T Consensus       269 ~d~~~g~~~~  278 (388)
T 3pe7_A          269 ADPETLENRQ  278 (388)
T ss_dssp             ECTTTCCEEE
T ss_pred             EecCCCceEE
Confidence            9999987543

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.49  E-value=5.1e-12  Score=142.42  Aligned_cols=220  Identities=8%  Similarity=-0.078  Sum_probs=145.4

Q ss_pred             eEeecCCCccEecccCCC---C-ceeEEecCC-----ccCCEEEEEEcCCCCeEEeecCC-------C----------CC
Q 006825          351 VEEGNKDSFDLNNNGSSG---G-GMKSKKKGS-----WFKSIRTVASSVTGHKERRSSDE-------R----------DT  404 (630)
Q Consensus       351 laSgS~D~tvr~vWD~~t---G-~~~~~lk~g-----H~~~V~sVAfSpdG~~lasgS~D-------~----------dt  404 (630)
                      |+.++. .+.+ ||.+..   | ....++. .     |...+..++|||||++|+.++.+       .          ++
T Consensus        94 la~~~~-~~~~-l~~~~~~~~g~~~~~~l~-~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~  170 (662)
T 3azo_A           94 LVFTHF-GDQR-LYAFEPDAPGGAVPRPLT-PVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDG  170 (662)
T ss_dssp             EEEEBT-TTCC-EEEECTTSTTCCCCEECS-CCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTS
T ss_pred             EEEEEC-CCCe-EEEEcCCCCCCCCCEecc-CCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCC
Confidence            554443 2444 554443   2 5556666 4     77889999999999999988765       1          22


Q ss_pred             ------cc---cc-CCcceEEEeecCCCe--EEEecCC--------cEEEEEeCC-CCcccceeeeeEecccCcCEEEEE
Q 006825          405 ------SS---EK-GGRRSSSATDDSQDV--SFHGQER--------VRVRQYGKS-CKDLTALYKCQEIQAHNGSIWSIK  463 (630)
Q Consensus       405 ------~s---~~-gh~~~Vsa~~~s~d~--l~Sgs~D--------g~VriWd~~-~~el~~~~~v~tL~gHt~~V~sVa  463 (630)
                            +.   +. .+...+....+++++  ++..+.+        ..|++|++. ++.+..  ..+...+|...+..++
T Consensus       171 ~~~~~~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~--~~~l~~~~~~~~~~~~  248 (662)
T 3azo_A          171 SAAADRSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFAD--TRTLLGGPEEAIAQAE  248 (662)
T ss_dssp             TTTTCGGGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEE--EEEEEEETTBCEEEEE
T ss_pred             CccccCCceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccc--cEEeCCCCCceEcceE
Confidence                  22   33 455667778899998  5544433        589999997 442111  2233455688999999


Q ss_pred             EccCCCEEEEEeCCC--cEEEEECcCCceeeeeecccccCcccc--------eEEEEECCCCCEEEEeeCCCeeeeeccc
Q 006825          464 FSLDGRYLASAGEDC--VIHVWQVVESERKGELLEKQEDGHLNM--------LLLANGSPEPTSLSPKHLDNHLEKKRRG  533 (630)
Q Consensus       464 FSpDG~~LASgS~Dg--tIrVWDl~tg~~~~~l~~~~~~gh~~~--------V~svafSpdg~~lasgs~Dg~I~i~~~~  533 (630)
                      |+|||++++++..|+  .|.+||+.+++... +.    ..+...        +..++|+|++++++++.. +.+      
T Consensus       249 ~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~-l~----~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~------  316 (662)
T 3azo_A          249 WAPDGSLIVATDRTGWWNLHRVDPATGAATQ-LC----RREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAA------  316 (662)
T ss_dssp             ECTTSCEEEEECTTSSCEEEEECTTTCCEEE-SS----CCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSC------
T ss_pred             ECCCCeEEEEECCCCCeEEEEEECCCCceee-cc----cccccccCccccccCceEeEeCCCEEEEEEEc-Ccc------
Confidence            999999999998898  55666665665432 21    222211        456889999999998877 776      


Q ss_pred             ccccccccccCccccccEEE--eCCCCceEEeccCCCCEEEE-EEcCC-CeEEEEECCCc--EEEEeCCCCcEEEEE
Q 006825          534 RSINRKSLSLDHMVVPETVF--ALSDKPICSFQGHLDDVLDL-SWSKS-QHLLSSSMDKT--VRLWHLSSKTCLKIF  604 (630)
Q Consensus       534 ~~~~~~s~s~d~~i~~~~Vw--dlsgk~l~tL~GHs~~V~sL-afSPd-~~LaSgS~Dgt--VrIWDl~tg~~l~t~  604 (630)
                                       .+|  ++.+..+..+..|...|..+ ++.++ -++++++.+..  |.+||+.++++....
T Consensus       317 -----------------~l~~~d~~~~~~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~l~  376 (662)
T 3azo_A          317 -----------------VLGILDPESGELVDAAGPWTEWAATLTVSGTRAVGVAASPRTAYEVVELDTVTGRARTIG  376 (662)
T ss_dssp             -----------------EEEEEETTTTEEEECCSSCCEEEEEEEEETTEEEEEEEETTEEEEEEEEETTTCCEEEEE
T ss_pred             -----------------EEEEEECCCCcEEEecCCCCeEEEEEecCCCEEEEEEcCCCCCCEEEEEECCCCceEEee
Confidence                             566  44555678888898888888 67666 44556666654  555577777755443

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.49  E-value=4.7e-12  Score=130.16  Aligned_cols=255  Identities=7%  Similarity=-0.011  Sum_probs=153.3

Q ss_pred             eEEEEcCCCceEeeecceeeecCccceeEEEeec---ceEeecCCC-----ccEecccCCCCceeEEecCCccCCEEEEE
Q 006825          316 KKVKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQ---NVEEGNKDS-----FDLNNNGSSGGGMKSKKKGSWFKSIRTVA  387 (630)
Q Consensus       316 ~~l~dv~TG~~lt~eef~~l~GHs~~V~~Lafs~---~laSgS~D~-----tvr~vWD~~tG~~~~~lk~gH~~~V~sVA  387 (630)
                      ..++++.+|+...+          ..+..++|+|   .|+..+.+.     .+. +|++.+|+...... .+.  +..++
T Consensus        45 l~~~d~~~~~~~~l----------~~~~~~~~SpDg~~la~~~~~~~~~~~~l~-~~~~~~g~~~~l~~-~~~--~~~~~  110 (347)
T 2gop_A           45 IVIENLKNNARRFI----------ENATMPRISPDGKKIAFMRANEEKKVSEIW-VADLETLSSKKILE-AKN--IRSLE  110 (347)
T ss_dssp             EEEEETTTCCEEEE----------ESCEEEEECTTSSEEEEEEEETTTTEEEEE-EEETTTTEEEEEEE-ESE--EEEEE
T ss_pred             EEEEeCCCCceEEc----------ccCCCeEECCCCCEEEEEEeccCCCcceEE-EEECCCCceEEEEc-CCC--cccee
Confidence            45667777765422          4577889998   566665432     355 77888887665544 333  99999


Q ss_pred             EcCCCCeEEeecCCCCCccccCCcceEEEeecCCCe-EEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEcc
Q 006825          388 SSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDV-SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSL  466 (630)
Q Consensus       388 fSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~-l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSp  466 (630)
                      |+|||++|+..+.++..   ......+..+.+..++ -+.......|++|++.+++.     ++.+.. . .+..++|+|
T Consensus       111 wspdg~~l~~~~~~~~~---~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~-----~~~l~~-~-~~~~~~~sp  180 (347)
T 2gop_A          111 WNEDSRKLLIVGFKRRE---DEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEV-----IEEFEK-P-RFSSGIWHR  180 (347)
T ss_dssp             ECTTSSEEEEEEECCCC------------CCCC---------CEEEEEEEETTTTEE-----EEEEEE-E-TTCEEEEET
T ss_pred             ECCCCCEEEEEEccCCC---cCCcEEEcccceeecCcccccCccceEEEEECCCCeE-----EeeecC-C-CcccccCCC
Confidence            99999998887644200   0001111222222222 11223356799999987653     133333 3 788999999


Q ss_pred             CCCEEEEEeCCC-------cEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeeccccccccc
Q 006825          467 DGRYLASAGEDC-------VIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRK  539 (630)
Q Consensus       467 DG~~LASgS~Dg-------tIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~  539 (630)
                      || +++++..+.       ..+||.+.+++ ...+.     .+ ..+..+  +|+|+.|+..+.+..-..          
T Consensus       181 dg-~~~~~~~~~~~~~~~~~~~l~~~d~~~-~~~l~-----~~-~~~~~~--spdg~~l~~~~~~~~~~~----------  240 (347)
T 2gop_A          181 DK-IVVNVPHREIIPQYFKFWDIYIWEDGK-EEKMF-----EK-VSFYAV--DSDGERILLYGKPEKKYM----------  240 (347)
T ss_dssp             TE-EEEEEECCCSSCCSSCCEEEEEEETTE-EEEEE-----EE-ESEEEE--EECSSCEEEEECCSSSCC----------
T ss_pred             Ce-EEEEEecccccccccccccEEEeCCCc-eEEec-----cC-cceeeE--CCCCCEEEEEEccccCCc----------
Confidence            99 888887653       45666655443 33331     22 344444  899998887765431000          


Q ss_pred             ccccCccccccEEEeCCCCceEEeccCCCCEEE-EEEcCCCeEEEEECCCcEEEEeCCCCcEEEEEecCCceEEEE-cCC
Q 006825          540 SLSLDHMVVPETVFALSDKPICSFQGHLDDVLD-LSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYDISLV-DRL  617 (630)
Q Consensus       540 s~s~d~~i~~~~Vwdlsgk~l~tL~GHs~~V~s-LafSPd~~LaSgS~DgtVrIWDl~tg~~l~t~~H~~~V~sVa-s~~  617 (630)
                        .....+   .+|+ +++....+.+|...|.. +.|+ ++++++++.|+.++|| +.+++....+.+...|.+++ ++ 
T Consensus       241 --~~~~~l---~~~d-~~~~~~l~~~~~~~~~~~~~~s-dg~~~~~~~~~~~~l~-~~~g~~~~~~~~~~~v~~~~~s~-  311 (347)
T 2gop_A          241 --SEHNKL---YIYD-GKEVMGILDEVDRGVGQAKIKD-GKVYFTLFEEGSVNLY-IWDGEIKPIAKGRHWIMGFDVDE-  311 (347)
T ss_dssp             --CSSCEE---EEEC-SSCEEESSTTCCSEEEEEEEET-TEEEEEEEETTEEEEE-EESSSEEEEECSSSEEEEEEESS-
T ss_pred             --cccceE---EEEC-CCceEeccccCCcccCCccEEc-CcEEEEEecCCcEEEE-EcCCceEEEecCCCeEEeeeeeC-
Confidence              000000   4555 55554445567778886 9999 7878889999999999 88777665555777888888 66 


Q ss_pred             CcEEEE
Q 006825          618 MLRFAY  623 (630)
Q Consensus       618 ~~~lAs  623 (630)
                      ...++.
T Consensus       312 ~~~~~~  317 (347)
T 2gop_A          312 IVVYLK  317 (347)
T ss_dssp             SEEEEE
T ss_pred             cEEEEE
Confidence            433333

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.46  E-value=3.8e-12  Score=132.33  Aligned_cols=232  Identities=7%  Similarity=-0.122  Sum_probs=143.0

Q ss_pred             EEEeec---ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecC
Q 006825          344 ELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDS  420 (630)
Q Consensus       344 ~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s  420 (630)
                      .+.|+|   .|+..+.+..+. +||+.+|+...... .+..      ++++|++++..+.+....      .......++
T Consensus        85 ~~~~spdg~~l~~~~~~~~l~-~~d~~~~~~~~~~~-~~~~------~~~~g~~l~~~~~~~~~~------~~~~~~~~s  150 (396)
T 3c5m_A           85 GGFISTDERAFFYVKNELNLM-KVDLETLEEQVIYT-VDEE------WKGYGTWVANSDCTKLVG------IEILKRDWQ  150 (396)
T ss_dssp             TCEECTTSSEEEEEETTTEEE-EEETTTCCEEEEEE-CCTT------EEEEEEEEECTTSSEEEE------EEEEGGGCC
T ss_pred             cceECCCCCEEEEEEcCCcEE-EEECCCCCcEEEEe-cccc------cCCCCCEEEeccCCcccc------ccccccccC
Confidence            356777   577888888899 99999988766555 3433      566666666443321000      000112344


Q ss_pred             CCe--EEE-----ecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEcc-CCCEEEEEeCC------CcEEEEECc
Q 006825          421 QDV--SFH-----GQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSL-DGRYLASAGED------CVIHVWQVV  486 (630)
Q Consensus       421 ~d~--l~S-----gs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSp-DG~~LASgS~D------gtIrVWDl~  486 (630)
                      +++  ++.     ...+..|++|++.+++.      ..+..+...+..+.|+| +|++|+..+.+      ..|.+|++.
T Consensus       151 pdg~~~~~~~~~~~~~~~~l~~~d~~~g~~------~~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~  224 (396)
T 3c5m_A          151 PLTSWEKFAEFYHTNPTCRLIKVDIETGEL------EVIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNED  224 (396)
T ss_dssp             CCCSHHHHHHHHHTCCCEEEEEEETTTCCE------EEEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETT
T ss_pred             CCCcceeeeeeccCCCcceEEEEECCCCcE------EeeccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECC
Confidence            444  221     14677899999987653      23345778899999999 89877776654      358888886


Q ss_pred             CCceeeeeecccccCc-ccceEEEEECCCCCEEEEeeCC-----CeeeeecccccccccccccCccccccEEEeCCCCce
Q 006825          487 ESERKGELLEKQEDGH-LNMLLLANGSPEPTSLSPKHLD-----NHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPI  560 (630)
Q Consensus       487 tg~~~~~l~~~~~~gh-~~~V~svafSpdg~~lasgs~D-----g~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l  560 (630)
                      .+.. ..+    .... ...+..++|+|+|++|+..+.+     +.|                       .+|++.....
T Consensus       225 ~~~~-~~l----~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l-----------------------~~~d~~~g~~  276 (396)
T 3c5m_A          225 GSNV-RKI----KEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVI-----------------------YKANPETLEN  276 (396)
T ss_dssp             SCCC-EES----SCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEE-----------------------EEECTTTCCE
T ss_pred             CCce-eEe----eccCCCccccceEECCCCCEEEEEecCCCCccceE-----------------------EEEECCCCCe
Confidence            5542 232    1211 2357789999999987776543     224                       6777733222


Q ss_pred             EEeccCCCCEEEEEEcC-C-CeEEEEE----------------CCCcEEEEeCCCCcEEEEEecCCc-----------eE
Q 006825          561 CSFQGHLDDVLDLSWSK-S-QHLLSSS----------------MDKTVRLWHLSSKTCLKIFSHSDY-----------DI  611 (630)
Q Consensus       561 ~tL~GHs~~V~sLafSP-d-~~LaSgS----------------~DgtVrIWDl~tg~~l~t~~H~~~-----------V~  611 (630)
                      ..+.... .+. +.|+| + ++|+.++                .+..|++||+.+++......|...           +.
T Consensus       277 ~~l~~~~-~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~  354 (396)
T 3c5m_A          277 EEVMVMP-PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQKLCKHSTSWDVLDGDRQITHP  354 (396)
T ss_dssp             EEEEECC-SEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCCEEEECCCCCCCBTTBSSTTCC
T ss_pred             EEeeeCC-CCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceEEccCCCCccccccccccCCCC
Confidence            2222111 133 89999 8 7777655                357899999998875443335441           44


Q ss_pred             EEE-cCCCcEEEEec
Q 006825          612 SLV-DRLMLRFAYGA  625 (630)
Q Consensus       612 sVa-s~~~~~lAsgs  625 (630)
                      .++ ++++..+++.+
T Consensus       355 ~~~~s~dg~~l~~~s  369 (396)
T 3c5m_A          355 HPSFTPNDDGVLFTS  369 (396)
T ss_dssp             CCEECTTSSEEEEEE
T ss_pred             CceEccCCCeEEEEe
Confidence            455 77777766654

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.43  E-value=7e-11  Score=122.57  Aligned_cols=221  Identities=13%  Similarity=-0.004  Sum_probs=151.5

Q ss_pred             eEEEEcCCCceEeeecceee-ecCccceeEEEeec---ceEeecCCCccEecccCCCCc-eeEEec--------CCccCC
Q 006825          316 KKVKEVGTGRQLTIEEFEMC-VGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGG-MKSKKK--------GSWFKS  382 (630)
Q Consensus       316 ~~l~dv~TG~~lt~eef~~l-~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~-~~~~lk--------~gH~~~  382 (630)
                      ..+++..+|+.+     ..+ .++-.....|++.+   .+++.+.+..|+ +||..... .+.++.        .++...
T Consensus        71 i~~~d~~~g~~~-----~~~~~~~~~~p~gia~d~~g~l~v~d~~~~~v~-~~~~~g~~~~~~~~~~~~~~g~~~~~~~~  144 (329)
T 3fvz_A           71 ILVIDPNNAEIL-----QSSGKNLFYLPHGLSIDTDGNYWVTDVALHQVF-KLDPHSKEGPLLILGRSMQPGSDQNHFCQ  144 (329)
T ss_dssp             EEEECTTTCCEE-----EEECTTTCSSEEEEEECTTSCEEEEETTTTEEE-EECTTCSSCCSEEESBTTBCCCSTTCCSS
T ss_pred             EEEEECCCCeEE-----eccCCCccCCceEEEECCCCCEEEEECCCCEEE-EEeCCCCeEEEEEecccCCCCCCccccCC
Confidence            446666667665     122 24555678899987   577788889999 99975442 555552        266778


Q ss_pred             EEEEEEcC-CCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEec-CCcEEEEEeCCCCcccceeeeeEec-------
Q 006825          383 IRTVASSV-TGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQ-ERVRVRQYGKSCKDLTALYKCQEIQ-------  453 (630)
Q Consensus       383 V~sVAfSp-dG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs-~Dg~VriWd~~~~el~~~~~v~tL~-------  453 (630)
                      ...|||+| +|.++++                             .+ .+.+|++|+....      .+..+.       
T Consensus       145 P~~ia~~~~~g~lyv~-----------------------------d~~~~~~I~~~~~~g~------~~~~~~~~g~~~~  189 (329)
T 3fvz_A          145 PTDVAVEPSTGAVFVS-----------------------------DGYCNSRIVQFSPSGK------FVTQWGEESSGSS  189 (329)
T ss_dssp             EEEEEECTTTCCEEEE-----------------------------ECSSCCEEEEECTTSC------EEEEECEECCSSS
T ss_pred             CcEEEEeCCCCeEEEE-----------------------------eCCCCCeEEEEcCCCC------EEEEeccCCCCCC
Confidence            88999998 6765543                             22 3567888885432      123332       


Q ss_pred             ---ccCcCEEEEEEccC-CCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeee
Q 006825          454 ---AHNGSIWSIKFSLD-GRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEK  529 (630)
Q Consensus       454 ---gHt~~V~sVaFSpD-G~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i  529 (630)
                         ++......|+|+|+ |+++++...++.|++|+..+++.+..+.   ...+...+..++++| +..++..+.   +.+
T Consensus       190 ~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~---~~~~~~~~~~~~~~p-g~~~~~~g~---~~v  262 (329)
T 3fvz_A          190 PRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIK---HASFGRNVFAISYIP-GFLFAVNGK---PYF  262 (329)
T ss_dssp             CCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEC---CTTTTTCEEEEEEET-TEEEEEECC---CCT
T ss_pred             CCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEe---ccccCCCcceeeecC-CEEEEeCCC---EEe
Confidence               34455899999998 8888888899999999998888777652   234556788999999 444443221   100


Q ss_pred             ecccccccccccccCccccccEEEeC-CCCceEEe---ccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCC
Q 006825          530 KRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSF---QGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSS  597 (630)
Q Consensus       530 ~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL---~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~t  597 (630)
                      -.          .....+   .+|+. +++.+.++   .+|...+..|+|+|+ .++++...+++|++|++..
T Consensus       263 ~~----------~~~~~v---~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~  322 (329)
T 3fvz_A          263 GD----------QEPVQG---FVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTE  322 (329)
T ss_dssp             TC----------SCCCCE---EEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEE
T ss_pred             cc----------CCCcEE---EEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCCc
Confidence            00          001111   78886 78888887   477888999999999 7888889999999999753

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.40  E-value=4.7e-11  Score=136.88  Aligned_cols=203  Identities=10%  Similarity=-0.056  Sum_probs=139.7

Q ss_pred             eeEEEeec---ceEeecCCCc----------------cEecccCCCCcee--EEecC-CccCCEEEEEEcCCCCeEEeec
Q 006825          342 VQELMRRQ---NVEEGNKDSF----------------DLNNNGSSGGGMK--SKKKG-SWFKSIRTVASSVTGHKERRSS  399 (630)
Q Consensus       342 V~~Lafs~---~laSgS~D~t----------------vr~vWD~~tG~~~--~~lk~-gH~~~V~sVAfSpdG~~lasgS  399 (630)
                      +..++|+|   .|+.++.|..                |. +|++.++...  ..... .|...+..++|||||++|+..+
T Consensus       173 ~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~  251 (710)
T 2xdw_A          173 FSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLY-YHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSI  251 (710)
T ss_dssp             SCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEE-EEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEE
T ss_pred             cceEEEEeCCCEEEEEEECCccccccccccccCCCCEEE-EEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEE
Confidence            45677776   5666666665                88 9999888732  22221 3667788999999999887543


Q ss_pred             CCCCCccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCC------CcccceeeeeEecccCcCEEEEEEccCCCEEEE
Q 006825          400 DERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSC------KDLTALYKCQEIQAHNGSIWSIKFSLDGRYLAS  473 (630)
Q Consensus       400 ~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~------~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LAS  473 (630)
                      ...                        ...+..|++||+.+      +..    ..+.|..|...+.. .|+|+|+.|+.
T Consensus       252 ~~~------------------------~~~~~~l~~~d~~~~~~~~~~~~----~~~~l~~~~~~~~~-~~s~dg~~l~~  302 (710)
T 2xdw_A          252 REG------------------------CDPVNRLWYCDLQQESNGITGIL----KWVKLIDNFEGEYD-YVTNEGTVFTF  302 (710)
T ss_dssp             ECS------------------------SSSCCEEEEEEGGGSSSSSCSSC----CCEEEECSSSSCEE-EEEEETTEEEE
T ss_pred             Ecc------------------------CCCccEEEEEECcccccccCCcc----ceEEeeCCCCcEEE-EEeccCCEEEE
Confidence            210                        00156799999865      321    24556777777765 48899998777


Q ss_pred             EeCCC----cEEEEECcCCce--eeeeecccccCcc-cceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCcc
Q 006825          474 AGEDC----VIHVWQVVESER--KGELLEKQEDGHL-NMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHM  546 (630)
Q Consensus       474 gS~Dg----tIrVWDl~tg~~--~~~l~~~~~~gh~-~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~  546 (630)
                      .+.++    .|.+||+.++..  ...++    ..+. ..+..++|++++.++++...++..++                 
T Consensus       303 ~s~~~~~~~~l~~~d~~~~~~~~~~~l~----~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l-----------------  361 (710)
T 2xdw_A          303 KTNRHSPNYRLINIDFTDPEESKWKVLV----PEHEKDVLEWVACVRSNFLVLCYLHDVKNTL-----------------  361 (710)
T ss_dssp             EECTTCTTCEEEEEETTSCCGGGCEEEE----CCCSSCEEEEEEEETTTEEEEEEEETTEEEE-----------------
T ss_pred             EECCCCCCCEEEEEeCCCCCcccceecc----CCCCCCeEEEEEEEcCCEEEEEEEECCEEEE-----------------
Confidence            66533    599999987642  23331    2222 35778888888888888888876532                 


Q ss_pred             ccccEEEeC-CCCceEEeccCCCCEEEEEEcCC-CeEE-EEE---CCCcEEEEeCCCCc
Q 006825          547 VVPETVFAL-SDKPICSFQGHLDDVLDLSWSKS-QHLL-SSS---MDKTVRLWHLSSKT  599 (630)
Q Consensus       547 i~~~~Vwdl-sgk~l~tL~GHs~~V~sLafSPd-~~La-SgS---~DgtVrIWDl~tg~  599 (630)
                          .+|++ +|+.+..+..|...|..++++|+ ..|+ +.+   ..++|.+||+.+++
T Consensus       362 ----~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~  416 (710)
T 2xdw_A          362 ----QLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE  416 (710)
T ss_dssp             ----EEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred             ----EEEECCCCCEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence                56677 77888888888888999999998 5444 333   35799999999877

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.39  E-value=9e-11  Score=134.57  Aligned_cols=241  Identities=11%  Similarity=0.008  Sum_probs=157.8

Q ss_pred             ecCccceeEEEeec---ceEeecCC-----CccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccc
Q 006825          336 VGHSPIVQELMRRQ---NVEEGNKD-----SFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSE  407 (630)
Q Consensus       336 ~GHs~~V~~Lafs~---~laSgS~D-----~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~  407 (630)
                      .+|...+..++|+|   .||.++.+     .+++ +||+.+|+.+.... .+.+ +..++|+|||+.|+.++.+......
T Consensus       121 ~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~-v~d~~tg~~~~~~~-~~~~-~~~~~wspDg~~l~~~~~~~~~~~~  197 (710)
T 2xdw_A          121 DDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIK-FMKVDGAKELPDVL-ERVK-FSCMAWTHDGKGMFYNAYPQQDGKS  197 (710)
T ss_dssp             TTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEE-EEETTTTEEEEEEE-EEEC-SCCEEECTTSSEEEEEECCCCSSCC
T ss_pred             cCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEE-EEECCCCCCCcccc-cCcc-cceEEEEeCCCEEEEEEECCccccc
Confidence            35666788899999   45544332     3889 99999999876433 3332 6679999999999887766421100


Q ss_pred             cCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeC-----CCcEEE
Q 006825          408 KGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGE-----DCVIHV  482 (630)
Q Consensus       408 ~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~-----DgtIrV  482 (630)
                      .+.             .-.......|++|++.+++... .++.+...|...+..+.|+|||++|+..+.     +..|.+
T Consensus       198 ~~~-------------~~~~~~~~~v~~~~l~t~~~~~-~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~  263 (710)
T 2xdw_A          198 DGT-------------ETSTNLHQKLYYHVLGTDQSED-ILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWY  263 (710)
T ss_dssp             SSS-------------CCCCCCCCEEEEEETTSCGGGC-EEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEE
T ss_pred             ccc-------------ccccCCCCEEEEEECCCCcccc-eEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEE
Confidence            000             0001234579999997764211 122233446777899999999999988765     678999


Q ss_pred             EECcC------Cc-eeeeeecccccCcccceEEEEECCCCCEEEEeeCCC----eeeeecccccccccccccCccccccE
Q 006825          483 WQVVE------SE-RKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDN----HLEKKRRGRSINRKSLSLDHMVVPET  551 (630)
Q Consensus       483 WDl~t------g~-~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg----~I~i~~~~~~~~~~s~s~d~~i~~~~  551 (630)
                      ||+.+      +. ....+     ..+...+.. .|+|+|..|+..+..+    .|                       .
T Consensus       264 ~d~~~~~~~~~~~~~~~~l-----~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l-----------------------~  314 (710)
T 2xdw_A          264 CDLQQESNGITGILKWVKL-----IDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRL-----------------------I  314 (710)
T ss_dssp             EEGGGSSSSSCSSCCCEEE-----ECSSSSCEE-EEEEETTEEEEEECTTCTTCEE-----------------------E
T ss_pred             EECcccccccCCccceEEe-----eCCCCcEEE-EEeccCCEEEEEECCCCCCCEE-----------------------E
Confidence            99986      43 23333     233334433 4778888777665432    23                       5


Q ss_pred             EEeCC-CC--ceEEeccCCC--CEEEEEEcCC-CeEEEEECCCc--EEEEeCCCCcEEEEEe-cCCceEEEE-cCCCcEE
Q 006825          552 VFALS-DK--PICSFQGHLD--DVLDLSWSKS-QHLLSSSMDKT--VRLWHLSSKTCLKIFS-HSDYDISLV-DRLMLRF  621 (630)
Q Consensus       552 Vwdls-gk--~l~tL~GHs~--~V~sLafSPd-~~LaSgS~Dgt--VrIWDl~tg~~l~t~~-H~~~V~sVa-s~~~~~l  621 (630)
                      +|++. ++  ....+..|..  .|..++|+++ .++++...|+.  |++|++.+|+.++.+. +...|..+. ++++..+
T Consensus       315 ~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l  394 (710)
T 2xdw_A          315 NIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEI  394 (710)
T ss_dssp             EEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEE
T ss_pred             EEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCCEEEecCCCCceEEEEecCCCCCEE
Confidence            56663 32  2456666655  6888999976 77788888885  5667777888888887 878888888 6665444


Q ss_pred             E
Q 006825          622 A  622 (630)
Q Consensus       622 A  622 (630)
                      +
T Consensus       395 ~  395 (710)
T 2xdw_A          395 F  395 (710)
T ss_dssp             E
T ss_pred             E
Confidence            4

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.38  E-value=1e-10  Score=118.40  Aligned_cols=223  Identities=9%  Similarity=-0.077  Sum_probs=150.1

Q ss_pred             eeeecCccceeEEEeec----ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCcccc
Q 006825          333 EMCVGHSPIVQELMRRQ----NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEK  408 (630)
Q Consensus       333 ~~l~GHs~~V~~Lafs~----~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~  408 (630)
                      +.+..+......++|.|    .++++..++.+. .||..++  ...+. .+...+.+++++++|+++++           
T Consensus        21 ~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~-~~~~~~~--~~~~~-~~~~~~~~l~~~~dg~l~v~-----------   85 (296)
T 3e5z_A           21 RRLADGFTWTEGPVYVPARSAVIFSDVRQNRTW-AWSDDGQ--LSPEM-HPSHHQNGHCLNKQGHLIAC-----------   85 (296)
T ss_dssp             EEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEE-EEETTSC--EEEEE-SSCSSEEEEEECTTCCEEEE-----------
T ss_pred             EEEecCCccccCCeEeCCCCEEEEEeCCCCEEE-EEECCCC--eEEEE-CCCCCcceeeECCCCcEEEE-----------
Confidence            45555666778888887    378888899999 9999887  55666 67788999999999986643           


Q ss_pred             CCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEeccc-CcCEEEEEEccCCCEEEEEeC-----------
Q 006825          409 GGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAH-NGSIWSIKFSLDGRYLASAGE-----------  476 (630)
Q Consensus       409 gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gH-t~~V~sVaFSpDG~~LASgS~-----------  476 (630)
                                        ...++.|.+|+..++++..+.  ....+. ...+..++|+|+|++++|.+.           
T Consensus        86 ------------------~~~~~~i~~~d~~~g~~~~~~--~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~  145 (296)
T 3e5z_A           86 ------------------SHGLRRLERQREPGGEWESIA--DSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYG  145 (296)
T ss_dssp             ------------------ETTTTEEEEECSTTCCEEEEE--CEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSC
T ss_pred             ------------------ecCCCeEEEEcCCCCcEEEEe--eccCCCCCCCCCCEEECCCCCEEEECCcccccccccccc
Confidence                              233457899998666532111  111111 235678999999999998432           


Q ss_pred             ------CCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCcccccc
Q 006825          477 ------DCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPE  550 (630)
Q Consensus       477 ------DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~  550 (630)
                            .+.|..++.. +. ...+     ..+......++|+|+++++++...++.|                       
T Consensus       146 ~~~~~~~~~l~~~~~~-g~-~~~~-----~~~~~~~~gi~~s~dg~~lv~~~~~~~i-----------------------  195 (296)
T 3e5z_A          146 GEMELPGRWVFRLAPD-GT-LSAP-----IRDRVKPNGLAFLPSGNLLVSDTGDNAT-----------------------  195 (296)
T ss_dssp             CCCCSSSCEEEEECTT-SC-EEEE-----ECCCSSEEEEEECTTSCEEEEETTTTEE-----------------------
T ss_pred             ccccCCCcEEEEECCC-CC-EEEe-----ecCCCCCccEEECCCCCEEEEeCCCCeE-----------------------
Confidence                  2344444443 33 2222     3445567889999999988777677777                       


Q ss_pred             EEEeC--CCCc---eEEeccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCCCcEEEEEe-cCCceEEEE--cCCCcEE
Q 006825          551 TVFAL--SDKP---ICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYDISLV--DRLMLRF  621 (630)
Q Consensus       551 ~Vwdl--sgk~---l~tL~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg~~l~t~~-H~~~V~sVa--s~~~~~l  621 (630)
                      .+|++  .++.   ...+..+...+..++|.++ .++++.  ++.|.+||.. ++.+..+. +.. +++++  .+++..|
T Consensus       196 ~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~-g~~~~~~~~~~~-~~~~~f~~~d~~~L  271 (296)
T 3e5z_A          196 HRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--GDGVHVLTPD-GDELGRVLTPQT-TSNLCFGGPEGRTL  271 (296)
T ss_dssp             EEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE--TTEEEEECTT-SCEEEEEECSSC-CCEEEEESTTSCEE
T ss_pred             EEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc--CCeEEEECCC-CCEEEEEECCCC-ceeEEEECCCCCEE
Confidence            45554  2332   2233335556778999999 555555  8899999986 88888888 666 88887  4665544


Q ss_pred             EEe
Q 006825          622 AYG  624 (630)
Q Consensus       622 Asg  624 (630)
                      ..+
T Consensus       272 ~v~  274 (296)
T 3e5z_A          272 YMT  274 (296)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            443

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.37  E-value=5.9e-10  Score=114.17  Aligned_cols=226  Identities=9%  Similarity=-0.075  Sum_probs=148.6

Q ss_pred             eeeecCccceeEEEeec---ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccccC
Q 006825          333 EMCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKG  409 (630)
Q Consensus       333 ~~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~g  409 (630)
                      ..+.++...+..++|.+   .++++..++.+. +||..+++...... .+...+.+++++++|+++++...+.       
T Consensus        38 ~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~-~~d~~~~~~~~~~~-~~~~~~~~i~~~~dg~l~v~~~~~~-------  108 (333)
T 2dg1_A           38 LEISKKGLQLEGLNFDRQGQLFLLDVFEGNIF-KINPETKEIKRPFV-SHKANPAAIKIHKDGRLFVCYLGDF-------  108 (333)
T ss_dssp             EEEESSCCCEEEEEECTTSCEEEEETTTCEEE-EECTTTCCEEEEEE-CSSSSEEEEEECTTSCEEEEECTTS-------
T ss_pred             EEEeccCccccCcEECCCCCEEEEECCCCEEE-EEeCCCCcEEEEee-CCCCCcceEEECCCCcEEEEeCCCC-------
Confidence            34455555667777876   356778889999 99999888766554 5678899999999998765432110       


Q ss_pred             CcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEec--ccCcCEEEEEEccCCCEEEEEeC------CCcEE
Q 006825          410 GRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQ--AHNGSIWSIKFSLDGRYLASAGE------DCVIH  481 (630)
Q Consensus       410 h~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~--gHt~~V~sVaFSpDG~~LASgS~------DgtIr  481 (630)
                                        ...+.|.+|+..++.+..     .+.  .+...+..++|+|+|+++++...      .+.|.
T Consensus       109 ------------------~~~~~i~~~d~~~~~~~~-----~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~  165 (333)
T 2dg1_A          109 ------------------KSTGGIFAATENGDNLQD-----IIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVY  165 (333)
T ss_dssp             ------------------SSCCEEEEECTTSCSCEE-----EECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEE
T ss_pred             ------------------CCCceEEEEeCCCCEEEE-----EEccCccCCcccceEECCCCCEEEEeccccccCCCceEE
Confidence                              012468899987765321     121  34567999999999998887764      24455


Q ss_pred             EEECcCCceeeeeecccccCcccceEEEEECCCCCEE-EEeeCCCeeeeecccccccccccccCccccccEEEeC--CCC
Q 006825          482 VWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSL-SPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL--SDK  558 (630)
Q Consensus       482 VWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~l-asgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl--sgk  558 (630)
                      .|+..+++.. .+     ......+..++|+|+++.+ ++...++.|.                       +|++  .++
T Consensus       166 ~~~~~~~~~~-~~-----~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~-----------------------~~d~~~~g~  216 (333)
T 2dg1_A          166 YVSPDFRTVT-PI-----IQNISVANGIALSTDEKVLWVTETTANRLH-----------------------RIALEDDGV  216 (333)
T ss_dssp             EECTTSCCEE-EE-----EEEESSEEEEEECTTSSEEEEEEGGGTEEE-----------------------EEEECTTSS
T ss_pred             EEeCCCCEEE-Ee-----ecCCCcccceEECCCCCEEEEEeCCCCeEE-----------------------EEEecCCCc
Confidence            5555444332 22     1223456789999999855 4444566773                       4443  222


Q ss_pred             ceE--------EeccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCCCcEEEEEe-cCC------ceEEEE-cCCCcEE
Q 006825          559 PIC--------SFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSD------YDISLV-DRLMLRF  621 (630)
Q Consensus       559 ~l~--------tL~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg~~l~t~~-H~~------~V~sVa-s~~~~~l  621 (630)
                      .+.        .+.++ ..+..+++.++ .++++...++.|.+||. .++.+..+. +..      .+.+++ .+++..|
T Consensus       217 ~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L  294 (333)
T 2dg1_A          217 TIQPFGATIPYYFTGH-EGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQL  294 (333)
T ss_dssp             SEEEEEEEEEEECCSS-SEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEE
T ss_pred             CcccccceEEEecCCC-CCCCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcCCCccccccCcceEEECCCCCEE
Confidence            221        22333 46788999999 77777778899999998 577788776 432      578888 6665443

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.37  E-value=1.2e-10  Score=119.02  Aligned_cols=211  Identities=9%  Similarity=-0.036  Sum_probs=159.0

Q ss_pred             ceEeecCCCccEecccCCCCceeEEecCCcc-CCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEec
Q 006825          350 NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWF-KSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQ  428 (630)
Q Consensus       350 ~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~-~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs  428 (630)
                      .|++++.|+.+. +||.++|+.+.++. .+. ..+.+++++|+|+++++                               
T Consensus         7 ~lv~~~~~~~v~-~~d~~tG~~~w~~~-~~~~~~~~~~~~~pdG~ilvs-------------------------------   53 (276)
T 3no2_A            7 LLVGGSGWNKIA-IINKDTKEIVWEYP-LEKGWECNSVAATKAGEILFS-------------------------------   53 (276)
T ss_dssp             EEEECTTCSEEE-EEETTTTEEEEEEE-CCTTCCCCEEEECTTSCEEEE-------------------------------
T ss_pred             EEEeeCCCCEEE-EEECCCCeEEEEeC-CCccCCCcCeEECCCCCEEEe-------------------------------
Confidence            478999999999 99999999999998 444 57889999999987762                               


Q ss_pred             CCcEEEEEeCCCCcccceeeeeEeccc-CcCEEEEEEccCCCEEEEEeC-CCcEEEEECcCCceeeeeecc-cccCcccc
Q 006825          429 ERVRVRQYGKSCKDLTALYKCQEIQAH-NGSIWSIKFSLDGRYLASAGE-DCVIHVWQVVESERKGELLEK-QEDGHLNM  505 (630)
Q Consensus       429 ~Dg~VriWd~~~~el~~~~~v~tL~gH-t~~V~sVaFSpDG~~LASgS~-DgtIrVWDl~tg~~~~~l~~~-~~~gh~~~  505 (630)
                      .+..|+.||. +++     .+..+..+ ...+.++.+.++|++|++.+. ++.|..+|. +++.+.++... ...++...
T Consensus        54 ~~~~V~~~d~-~G~-----~~W~~~~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~  126 (276)
T 3no2_A           54 YSKGAKMITR-DGR-----ELWNIAAPAGCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQ  126 (276)
T ss_dssp             CBSEEEEECT-TSC-----EEEEEECCTTCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGS
T ss_pred             CCCCEEEECC-CCC-----EEEEEcCCCCccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCccccc
Confidence            1334777877 343     24445544 346889999999999999887 777777775 67766664311 11123334


Q ss_pred             eEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeCCCCceEEeccCCCCEEEEEEcCC-CeEEEE
Q 006825          506 LLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSS  584 (630)
Q Consensus       506 V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL~GHs~~V~sLafSPd-~~LaSg  584 (630)
                      ...+++.++|.++++...++.|                       ..|+..|+.+.++..+ ..+..+.+.++ ++|+++
T Consensus       127 ~~~v~~~~~G~~lv~~~~~~~v-----------------------~~~d~~G~~~w~~~~~-~~~~~~~~~~~g~~~v~~  182 (276)
T 3no2_A          127 FRQINKNKKGNYLVPLFATSEV-----------------------REIAPNGQLLNSVKLS-GTPFSSAFLDNGDCLVAC  182 (276)
T ss_dssp             CSCCEECTTSCEEEEETTTTEE-----------------------EEECTTSCEEEEEECS-SCCCEEEECTTSCEEEEC
T ss_pred             ccCceECCCCCEEEEecCCCEE-----------------------EEECCCCCEEEEEECC-CCccceeEcCCCCEEEEe
Confidence            5566788999999999888888                       7788788888888765 34567788888 888888


Q ss_pred             ECCCcEEEEeCCCCcEEEEEe-cC------CceEEEE-cCCCcEEEEe
Q 006825          585 SMDKTVRLWHLSSKTCLKIFS-HS------DYDISLV-DRLMLRFAYG  624 (630)
Q Consensus       585 S~DgtVrIWDl~tg~~l~t~~-H~------~~V~sVa-s~~~~~lAsg  624 (630)
                      +.++.|..||..+|+.+..+. +.      ..+..++ .+++..++..
T Consensus       183 ~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~  230 (276)
T 3no2_A          183 GDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICN  230 (276)
T ss_dssp             BTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEE
T ss_pred             CCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEe
Confidence            888899999999999999996 32      2367777 6677777665

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.35  E-value=7.5e-12  Score=130.12  Aligned_cols=241  Identities=6%  Similarity=-0.107  Sum_probs=147.4

Q ss_pred             EEEcCCCceEeeecceeeecC-----ccceeEEEeec---ceEeecC-C--CccEecccCCCCceeEEecCCccCCEEEE
Q 006825          318 VKEVGTGRQLTIEEFEMCVGH-----SPIVQELMRRQ---NVEEGNK-D--SFDLNNNGSSGGGMKSKKKGSWFKSIRTV  386 (630)
Q Consensus       318 l~dv~TG~~lt~eef~~l~GH-----s~~V~~Lafs~---~laSgS~-D--~tvr~vWD~~tG~~~~~lk~gH~~~V~sV  386 (630)
                      ..+..||+.+     .++..+     ...+..++|+|   .|+..+. +  ..+. +||+.+|+...... ++...+..+
T Consensus        14 ~~d~~~g~~~-----~~l~~~~~~~~~~~~~~~~~SpdG~~l~~~~~~~g~~~l~-~~d~~~~~~~~l~~-~~~~~~~~~   86 (396)
T 3c5m_A           14 FVDSDTQVKV-----TRLTPTDIICHRNYFYQKCFTQDGKKLLFAGDFDGNRNYY-LLNLETQQAVQLTE-GKGDNTFGG   86 (396)
T ss_dssp             EECTTTCCEE-----EECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEE-EEETTTTEEEECCC-SSCBCTTTC
T ss_pred             eecCCCCcce-----EEEecCCCCccceeeecCcCCCCCCEEEEEEecCCCceEE-EEECCCCcEEEeec-CCCCccccc
Confidence            5566788766     444433     33478888998   4554433 2  3566 77988887654433 444333347


Q ss_pred             EEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEE-----
Q 006825          387 ASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWS-----  461 (630)
Q Consensus       387 AfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~s-----  461 (630)
                      +|+|||++|+..+.                             +..|++|+..+++..     ..+..+......     
T Consensus        87 ~~spdg~~l~~~~~-----------------------------~~~l~~~d~~~~~~~-----~~~~~~~~~~~~g~~l~  132 (396)
T 3c5m_A           87 FISTDERAFFYVKN-----------------------------ELNLMKVDLETLEEQ-----VIYTVDEEWKGYGTWVA  132 (396)
T ss_dssp             EECTTSSEEEEEET-----------------------------TTEEEEEETTTCCEE-----EEEECCTTEEEEEEEEE
T ss_pred             eECCCCCEEEEEEc-----------------------------CCcEEEEECCCCCcE-----EEEecccccCCCCCEEE
Confidence            89999998865432                             235888888766431     222333332222     


Q ss_pred             --------------EEEccCCCEEEEE-----eCCCcEEEEECcCCceeeeeecccccCcccceEEEEECC-CCCEEEEe
Q 006825          462 --------------IKFSLDGRYLASA-----GEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSP-EPTSLSPK  521 (630)
Q Consensus       462 --------------VaFSpDG~~LASg-----S~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSp-dg~~lasg  521 (630)
                                    ++|+|++++++.+     ..+..|.+||+.+++....      ..+...+..+.|+| ++..|+..
T Consensus       133 ~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~------~~~~~~~~~~~~sp~dg~~l~~~  206 (396)
T 3c5m_A          133 NSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVI------HQDTAWLGHPIYRPFDDSTVGFC  206 (396)
T ss_dssp             CTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEE------EEESSCEEEEEEETTEEEEEEEE
T ss_pred             eccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEee------ccCCcccccceECCCCCCEEEEE
Confidence                          4567888877654     4667899999988765433      23456688899999 78877766


Q ss_pred             eCCCeeeeecccccccccccccCccccccEEEeCCCCceEEeccCC--CCEEEEEEcCC-CeEEEEECC-----CcEEEE
Q 006825          522 HLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHL--DDVLDLSWSKS-QHLLSSSMD-----KTVRLW  593 (630)
Q Consensus       522 s~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL~GHs--~~V~sLafSPd-~~LaSgS~D-----gtVrIW  593 (630)
                      +.+..-              .....+   .+|++.+..+..+..+.  ..+..++|+|+ ++|+.++.+     +.|++|
T Consensus       207 ~~~~~~--------------~~~~~l---~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~  269 (396)
T 3c5m_A          207 HEGPHD--------------LVDARM---WLVNEDGSNVRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKA  269 (396)
T ss_dssp             ECSCSS--------------SCSCCC---EEEETTSCCCEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEE
T ss_pred             ecCCCC--------------CCCceE---EEEECCCCceeEeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEE
Confidence            543210              000001   56666555555555443  35888999999 777777654     459999


Q ss_pred             eCCCCcEEEEEecCCceEEEE-cC-CCcEEEEe
Q 006825          594 HLSSKTCLKIFSHSDYDISLV-DR-LMLRFAYG  624 (630)
Q Consensus       594 Dl~tg~~l~t~~H~~~V~sVa-s~-~~~~lAsg  624 (630)
                      |+.+++......... .. ++ ++ ++..++++
T Consensus       270 d~~~g~~~~l~~~~~-~~-~~~s~~dg~~l~~~  300 (396)
T 3c5m_A          270 NPETLENEEVMVMPP-CS-HLMSNFDGSLMVGD  300 (396)
T ss_dssp             CTTTCCEEEEEECCS-EE-EEEECSSSSEEEEE
T ss_pred             ECCCCCeEEeeeCCC-CC-CCccCCCCceEEEe
Confidence            999987655433222 22 44 66 77777664

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.33  E-value=3.2e-11  Score=138.07  Aligned_cols=245  Identities=11%  Similarity=-0.021  Sum_probs=156.5

Q ss_pred             ceeecCCCCcccCCCccccccCCCCCcccccccEEEEECCCCcEEEEeeecCCCceeEEEEcCCCceEeeecceeeecCc
Q 006825          260 SMSINGNGNYIGNSGEVVEDFDGNGTAGVAEQGCLIKNLDNGKEFVVNEIQEDGTWKKVKEVGTGRQLTIEEFEMCVGHS  339 (630)
Q Consensus       260 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~LddG~~~~v~e~~~dg~~~~l~dv~TG~~lt~eef~~l~GHs  339 (630)
                      ++++||||++|+..++         ..+.+...++|+++++|+..                       ...   .+.+. 
T Consensus       125 ~~~~SPDG~~la~~~~---------~~G~~~~~i~v~dl~tg~~~-----------------------~~~---~~~~~-  168 (695)
T 2bkl_A          125 TWAVSWDGKKVAFAQK---------PNAADEAVLHVIDVDSGEWS-----------------------KVD---VIEGG-  168 (695)
T ss_dssp             EEEECTTSSEEEEEEE---------ETTCSCCEEEEEETTTCCBC-----------------------SSC---CBSCC-
T ss_pred             EEEECCCCCEEEEEEC---------CCCCceEEEEEEECCCCCCc-----------------------CCc---ccCcc-
Confidence            3689999999955542         23345566777777666431                       000   00000 


Q ss_pred             cceeEEEeec---ceEeecCCCc-------------cEecccCCCCcee--EEec-CCccCCEEEEEEcCCCCeEEeecC
Q 006825          340 PIVQELMRRQ---NVEEGNKDSF-------------DLNNNGSSGGGMK--SKKK-GSWFKSIRTVASSVTGHKERRSSD  400 (630)
Q Consensus       340 ~~V~~Lafs~---~laSgS~D~t-------------vr~vWD~~tG~~~--~~lk-~gH~~~V~sVAfSpdG~~lasgS~  400 (630)
                       ....++|+|   .|+.++.|.+             |+ +|++.++...  ..+. .+|...+.+++|||||++|+..+.
T Consensus       169 -~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~-~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~  246 (695)
T 2bkl_A          169 -KYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIR-YHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYIL  246 (695)
T ss_dssp             -TTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEE-EEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEE
T ss_pred             -cccceEEecCCCEEEEEEecCCCCCccccCCCCCEEE-EEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEe
Confidence             014567777   5777787776             88 9999988732  2222 156678999999999998875432


Q ss_pred             CCCCccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEe---CC
Q 006825          401 ERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAG---ED  477 (630)
Q Consensus       401 D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS---~D  477 (630)
                      +.                         .....|++|+..+++      ...|..|...+....| ++|+++++..   .+
T Consensus       247 ~~-------------------------~~~~~l~~~~~~~~~------~~~l~~~~~~~~~~~~-~~g~l~~~s~~~~~~  294 (695)
T 2bkl_A          247 RG-------------------------WSENDVYWKRPGEKD------FRLLVKGVGAKYEVHA-WKDRFYVLTDEGAPR  294 (695)
T ss_dssp             ET-------------------------TTEEEEEEECTTCSS------CEEEEECSSCCEEEEE-ETTEEEEEECTTCTT
T ss_pred             CC-------------------------CCceEEEEEcCCCCc------eEEeecCCCceEEEEe-cCCcEEEEECCCCCC
Confidence            21                         023357777665443      3445667777777777 5666555544   35


Q ss_pred             CcEEEEECcCCce--eeeeecccccCc-ccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEe
Q 006825          478 CVIHVWQVVESER--KGELLEKQEDGH-LNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFA  554 (630)
Q Consensus       478 gtIrVWDl~tg~~--~~~l~~~~~~gh-~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwd  554 (630)
                      +.|.+||+.++..  ...++    ..+ ...+..++++ ++.++++...++..++                     .+++
T Consensus       295 ~~l~~~d~~~~~~~~~~~l~----~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l---------------------~~~~  348 (695)
T 2bkl_A          295 QRVFEVDPAKPARASWKEIV----PEDSSASLLSVSIV-GGHLSLEYLKDATSEV---------------------RVAT  348 (695)
T ss_dssp             CEEEEEBTTBCSGGGCEEEE----CCCSSCEEEEEEEE-TTEEEEEEEETTEEEE---------------------EEEE
T ss_pred             CEEEEEeCCCCCccCCeEEe----cCCCCCeEEEEEEE-CCEEEEEEEECCEEEE---------------------EEEe
Confidence            8899999987653  23332    222 4457778887 6778888888887733                     2334


Q ss_pred             CCCCceEEeccC-CCCEEEEEEcCC-CeEE-EEE---CCCcEEEEeCCCCcE
Q 006825          555 LSDKPICSFQGH-LDDVLDLSWSKS-QHLL-SSS---MDKTVRLWHLSSKTC  600 (630)
Q Consensus       555 lsgk~l~tL~GH-s~~V~sLafSPd-~~La-SgS---~DgtVrIWDl~tg~~  600 (630)
                      +.++.+..+..+ ...|..++|+|+ ..|+ +.+   ..++|++||+.+++.
T Consensus       349 ~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~  400 (695)
T 2bkl_A          349 LKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKS  400 (695)
T ss_dssp             TTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred             CCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence            456767777666 667888999998 5555 332   357899999998874

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.30  E-value=5.5e-10  Score=114.41  Aligned_cols=220  Identities=8%  Similarity=-0.057  Sum_probs=149.1

Q ss_pred             cceeEEEeec---ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEE
Q 006825          340 PIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSA  416 (630)
Q Consensus       340 ~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa  416 (630)
                      ..|..|+|.+   .++..+.+++++ .|   .++....+. ++...+.+++|+++|+++                     
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~-~~~~~~~~~~~~~~g~l~---------------------   59 (333)
T 2dg1_A            6 QDLPTLFYSGKSNSAVPIISESELQ-TI---TAEPWLEIS-KKGLQLEGLNFDRQGQLF---------------------   59 (333)
T ss_dssp             CCCCBCCSCGGGGCSSCCCCGGGSC-EE---ECEEEEEEE-SSCCCEEEEEECTTSCEE---------------------
T ss_pred             cccceeeecCCccceeEEeecccCc-cc---ccceeEEEe-ccCccccCcEECCCCCEE---------------------
Confidence            4467788887   456667888999 88   566777777 777788999999998754                     


Q ss_pred             eecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCC----CcEEEEECcCCceee
Q 006825          417 TDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGED----CVIHVWQVVESERKG  492 (630)
Q Consensus       417 ~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~D----gtIrVWDl~tg~~~~  492 (630)
                              +++..++.|++|+..++++.     ..+..+...|.+|+|+++|+++++...+    +.|.+||..++....
T Consensus        60 --------~~~~~~~~i~~~d~~~~~~~-----~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~  126 (333)
T 2dg1_A           60 --------LLDVFEGNIFKINPETKEIK-----RPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQD  126 (333)
T ss_dssp             --------EEETTTCEEEEECTTTCCEE-----EEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEE
T ss_pred             --------EEECCCCEEEEEeCCCCcEE-----EEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEE
Confidence                    34455678999998776532     2223567789999999999988887777    789999998766442


Q ss_pred             eeecccccCcccceEEEEECCCCCEEEEeeCC------CeeeeecccccccccccccCccccccEEEeCCCCceEEeccC
Q 006825          493 ELLEKQEDGHLNMLLLANGSPEPTSLSPKHLD------NHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGH  566 (630)
Q Consensus       493 ~l~~~~~~gh~~~V~svafSpdg~~lasgs~D------g~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL~GH  566 (630)
                      .+.   ...+...+..++++|++.++++...+      +.|                       ..++..+..+..+..+
T Consensus       127 ~~~---~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l-----------------------~~~~~~~~~~~~~~~~  180 (333)
T 2dg1_A          127 IIE---DLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGV-----------------------YYVSPDFRTVTPIIQN  180 (333)
T ss_dssp             EEC---SSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEE-----------------------EEECTTSCCEEEEEEE
T ss_pred             EEc---cCccCCcccceEECCCCCEEEEeccccccCCCceE-----------------------EEEeCCCCEEEEeecC
Confidence            221   11234568899999999988876432      222                       2333333334444344


Q ss_pred             CCCEEEEEEcCC-CeE-EEEECCCcEEEEeCCC-CcEEEEE--------ecCCceEEEE-cCCCcEEEEe
Q 006825          567 LDDVLDLSWSKS-QHL-LSSSMDKTVRLWHLSS-KTCLKIF--------SHSDYDISLV-DRLMLRFAYG  624 (630)
Q Consensus       567 s~~V~sLafSPd-~~L-aSgS~DgtVrIWDl~t-g~~l~t~--------~H~~~V~sVa-s~~~~~lAsg  624 (630)
                      ...+..++|+|+ ++| ++.+.++.|++||+.+ +..+..+        .....+..++ ++++..+++.
T Consensus       181 ~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~  250 (333)
T 2dg1_A          181 ISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAM  250 (333)
T ss_dssp             ESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEE
T ss_pred             CCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCCCCCCceEECCCCCEEEEE
Confidence            456889999999 645 5556789999999964 4433221        1113677777 6666655543

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.29  E-value=9.6e-10  Score=111.22  Aligned_cols=211  Identities=10%  Similarity=-0.016  Sum_probs=140.1

Q ss_pred             eecCccceeEEEeec---ceEeecCCCccEecccCCCCceeEEec---CCccCCEEEEEEcCCCCeEEe----ecCCCCC
Q 006825          335 CVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKKK---GSWFKSIRTVASSVTGHKERR----SSDERDT  404 (630)
Q Consensus       335 l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~lk---~gH~~~V~sVAfSpdG~~las----gS~D~dt  404 (630)
                      +..+...+..|++.+   .+++...++.+. +||..+|+......   ......+..++++|+|+++++    |..+.. 
T Consensus        64 ~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~-~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~-  141 (296)
T 3e5z_A           64 EMHPSHHQNGHCLNKQGHLIACSHGLRRLE-RQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPE-  141 (296)
T ss_dssp             EESSCSSEEEEEECTTCCEEEEETTTTEEE-EECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGG-
T ss_pred             EECCCCCcceeeECCCCcEEEEecCCCeEE-EEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCcccccccc-
Confidence            334566788899987   455656678899 99998888654432   112345678999999998775    221100 


Q ss_pred             ccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEE
Q 006825          405 SSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQ  484 (630)
Q Consensus       405 ~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWD  484 (630)
                         .+..            .......+.|..++.. ++      +..+..+......++|+|||++|++...++.|.+|+
T Consensus       142 ---~~~~------------~~~~~~~~~l~~~~~~-g~------~~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~  199 (296)
T 3e5z_A          142 ---EGYG------------GEMELPGRWVFRLAPD-GT------LSAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYC  199 (296)
T ss_dssp             ---GSSC------------CCCCSSSCEEEEECTT-SC------EEEEECCCSSEEEEEECTTSCEEEEETTTTEEEEEE
T ss_pred             ---cccc------------ccccCCCcEEEEECCC-CC------EEEeecCCCCCccEEECCCCCEEEEeCCCCeEEEEE
Confidence               0000            0000112356666654 32      234456777889999999999998888899999999


Q ss_pred             Cc-CCce-e-eeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeCCCCceE
Q 006825          485 VV-ESER-K-GELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPIC  561 (630)
Q Consensus       485 l~-tg~~-~-~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~  561 (630)
                      +. ++.. . ..++    ..+...+..+++.++|.++++.  ++.|                       .+|+..++.+.
T Consensus       200 ~~~~g~~~~~~~~~----~~~~~~p~~i~~d~~G~l~v~~--~~~v-----------------------~~~~~~g~~~~  250 (296)
T 3e5z_A          200 LNARGETEYQGVHF----TVEPGKTDGLRVDAGGLIWASA--GDGV-----------------------HVLTPDGDELG  250 (296)
T ss_dssp             ECSSSCEEEEEEEE----CCSSSCCCSEEEBTTSCEEEEE--TTEE-----------------------EEECTTSCEEE
T ss_pred             ECCCCcCcCCCeEe----eCCCCCCCeEEECCCCCEEEEc--CCeE-----------------------EEECCCCCEEE
Confidence            97 4443 1 1111    2234456678999999987776  6667                       78888888888


Q ss_pred             EeccCCCCEEEEEE-cCC-CeEEEEECCCcEEEEeCCCCcE
Q 006825          562 SFQGHLDDVLDLSW-SKS-QHLLSSSMDKTVRLWHLSSKTC  600 (630)
Q Consensus       562 tL~GHs~~V~sLaf-SPd-~~LaSgS~DgtVrIWDl~tg~~  600 (630)
                      .+..+.. +++++| .|+ +.|+.++.++ +.-+++.+.+.
T Consensus       251 ~~~~~~~-~~~~~f~~~d~~~L~v~t~~~-l~~~~~~~~~~  289 (296)
T 3e5z_A          251 RVLTPQT-TSNLCFGGPEGRTLYMTVSTE-FWSIETNVRGL  289 (296)
T ss_dssp             EEECSSC-CCEEEEESTTSCEEEEEETTE-EEEEECSCCBC
T ss_pred             EEECCCC-ceeEEEECCCCCEEEEEcCCe-EEEEEcccccc
Confidence            8888887 999999 578 7888888764 33455655543

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.28  E-value=5.1e-10  Score=114.91  Aligned_cols=177  Identities=5%  Similarity=-0.055  Sum_probs=116.6

Q ss_pred             CccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecC-CcEEEEE
Q 006825          358 SFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQE-RVRVRQY  436 (630)
Q Consensus       358 ~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~-Dg~VriW  436 (630)
                      ..+. +||+.+|+.+..+. . . .+..++|+||| ++.++..+...                .     ... ...|+++
T Consensus       152 ~~l~-~~d~~~~~~~~~l~-~-~-~~~~~~~spdg-~~~~~~~~~~~----------------~-----~~~~~~~l~~~  205 (347)
T 2gop_A          152 TTFW-IFDTESEEVIEEFE-K-P-RFSSGIWHRDK-IVVNVPHREII----------------P-----QYFKFWDIYIW  205 (347)
T ss_dssp             EEEE-EEETTTTEEEEEEE-E-E-TTCEEEEETTE-EEEEEECCCSS----------------C-----CSSCCEEEEEE
T ss_pred             ceEE-EEECCCCeEEeeec-C-C-CcccccCCCCe-EEEEEeccccc----------------c-----cccccccEEEe
Confidence            4677 89999988756665 3 3 78899999999 66654332100                0     000 2346666


Q ss_pred             eCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCC--------cEEEEECcCCceeeeeecccccCcccceEE
Q 006825          437 GKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDC--------VIHVWQVVESERKGELLEKQEDGHLNMLLL  508 (630)
Q Consensus       437 d~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~Dg--------tIrVWDl~tg~~~~~l~~~~~~gh~~~V~s  508 (630)
                      +  +++      ...+..+ ..+..+  +|||++|+.++.+.        .|.+||  +++. ..+    ..++...+..
T Consensus       206 d--~~~------~~~l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~-~~l----~~~~~~~~~~  267 (347)
T 2gop_A          206 E--DGK------EEKMFEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEV-MGI----LDEVDRGVGQ  267 (347)
T ss_dssp             E--TTE------EEEEEEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCE-EES----STTCCSEEEE
T ss_pred             C--CCc------eEEeccC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCce-Eec----cccCCcccCC
Confidence            6  332      2334445 556655  99999998887553        577787  4443 332    2455667775


Q ss_pred             -EEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeC-CCCceEEeccCCCCEEEEEEcCCCeEEEEEC
Q 006825          509 -ANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSWSKSQHLLSSSM  586 (630)
Q Consensus       509 -vafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL~GHs~~V~sLafSPd~~LaSgS~  586 (630)
                       +.|+ ++ +++++..++.+                       ++| + +++. ..+..+...|.+++|+| .++++++.
T Consensus       268 ~~~~s-dg-~~~~~~~~~~~-----------------------~l~-~~~g~~-~~~~~~~~~v~~~~~s~-~~~~~~~~  319 (347)
T 2gop_A          268 AKIKD-GK-VYFTLFEEGSV-----------------------NLY-IWDGEI-KPIAKGRHWIMGFDVDE-IVVYLKET  319 (347)
T ss_dssp             EEEET-TE-EEEEEEETTEE-----------------------EEE-EESSSE-EEEECSSSEEEEEEESS-SEEEEEEC
T ss_pred             ccEEc-Cc-EEEEEecCCcE-----------------------EEE-EcCCce-EEEecCCCeEEeeeeeC-cEEEEEcC
Confidence             8999 88 88888888887                       566 5 4444 34445677899999999 88888888


Q ss_pred             CCcE-EEEeCCCCcEEEEEe-cCC
Q 006825          587 DKTV-RLWHLSSKTCLKIFS-HSD  608 (630)
Q Consensus       587 DgtV-rIWDl~tg~~l~t~~-H~~  608 (630)
                      +++. +||.+. ++. ..+. |+.
T Consensus       320 ~~~~~~l~~~~-g~~-~~lt~~n~  341 (347)
T 2gop_A          320 ATRLRELFTWD-GEE-KQLTDYND  341 (347)
T ss_dssp             SSSCCEEEEES-SSE-EECCCTTS
T ss_pred             CCChHHheEeC-CcE-EEeccccH
Confidence            8776 888877 653 3344 443

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.26  E-value=4.4e-10  Score=128.65  Aligned_cols=235  Identities=8%  Similarity=-0.099  Sum_probs=151.5

Q ss_pred             ecCccceeEEEeec---ceE-----eecCCCccEecccCCCCceeEEecCCccCCE--EEEEEcCCCCeEEeecCCCCC-
Q 006825          336 VGHSPIVQELMRRQ---NVE-----EGNKDSFDLNNNGSSGGGMKSKKKGSWFKSI--RTVASSVTGHKERRSSDERDT-  404 (630)
Q Consensus       336 ~GHs~~V~~Lafs~---~la-----SgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V--~sVAfSpdG~~lasgS~D~dt-  404 (630)
                      .+|...+..++|+|   .||     +|+.+.+++ +||+.+|+.+.  . .+...+  ..++|+|||+.|+.++.+... 
T Consensus       117 ~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~-v~dl~tg~~~~--~-~~~~~~~~~~~~wspDg~~l~~~~~d~~~~  192 (695)
T 2bkl_A          117 KDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLH-VIDVDSGEWSK--V-DVIEGGKYATPKWTPDSKGFYYEWLPTDPS  192 (695)
T ss_dssp             SSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEE-EEETTTCCBCS--S-CCBSCCTTCCCEECTTSSEEEEEECCCCTT
T ss_pred             cCCCEEEEEEEECCCCCEEEEEECCCCCceEEEE-EEECCCCCCcC--C-cccCcccccceEEecCCCEEEEEEecCCCC
Confidence            36777788999999   566     677788999 99999998651  1 233333  579999999999887765410 


Q ss_pred             ccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCC----cE
Q 006825          405 SSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDC----VI  480 (630)
Q Consensus       405 ~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~Dg----tI  480 (630)
                      ....                 .......|++|++.+++... .++.....|...+..+.|+|||++|+..+.++    .|
T Consensus       193 ~~~~-----------------~~~~~~~v~~~~l~t~~~~~-~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l  254 (695)
T 2bkl_A          193 IKVD-----------------ERPGYTTIRYHTLGTEPSKD-TVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDV  254 (695)
T ss_dssp             SCGG-----------------GGGGGCEEEEEETTSCGGGC-EEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEE
T ss_pred             Cccc-----------------cCCCCCEEEEEECCCCchhc-eEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEE
Confidence            0000                 00124569999998764321 23344456777899999999999998888776    67


Q ss_pred             EEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeC---CCeeeeecccccccccccccCccccccEEEeC-C
Q 006825          481 HVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHL---DNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-S  556 (630)
Q Consensus       481 rVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~---Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-s  556 (630)
                      .+|+..+++ ...+     ..+...+....+ +++.+++....   ++.|                       .+|++ +
T Consensus       255 ~~~~~~~~~-~~~l-----~~~~~~~~~~~~-~~g~l~~~s~~~~~~~~l-----------------------~~~d~~~  304 (695)
T 2bkl_A          255 YWKRPGEKD-FRLL-----VKGVGAKYEVHA-WKDRFYVLTDEGAPRQRV-----------------------FEVDPAK  304 (695)
T ss_dssp             EEECTTCSS-CEEE-----EECSSCCEEEEE-ETTEEEEEECTTCTTCEE-----------------------EEEBTTB
T ss_pred             EEEcCCCCc-eEEe-----ecCCCceEEEEe-cCCcEEEEECCCCCCCEE-----------------------EEEeCCC
Confidence            777665543 2332     223334444455 55554444331   3444                       55666 3


Q ss_pred             CCc--eEEeccC--CCCEEEEEEcCCCeEEEEECCCcEEEEeCC-CCcEEEEEe-c-CCceEEEE-cCCCcEEE
Q 006825          557 DKP--ICSFQGH--LDDVLDLSWSKSQHLLSSSMDKTVRLWHLS-SKTCLKIFS-H-SDYDISLV-DRLMLRFA  622 (630)
Q Consensus       557 gk~--l~tL~GH--s~~V~sLafSPd~~LaSgS~DgtVrIWDl~-tg~~l~t~~-H-~~~V~sVa-s~~~~~lA  622 (630)
                      ++.  ...+..|  ...|..++|+.+.++++...|+..+||.+. +++.++.+. + ...|..++ ++++..++
T Consensus       305 ~~~~~~~~l~~~~~~~~l~~~~~~~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~  378 (695)
T 2bkl_A          305 PARASWKEIVPEDSSASLLSVSIVGGHLSLEYLKDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAY  378 (695)
T ss_dssp             CSGGGCEEEECCCSSCEEEEEEEETTEEEEEEEETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEE
T ss_pred             CCccCCeEEecCCCCCeEEEEEEECCEEEEEEEECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEE
Confidence            332  2444433  445788999854888899999999999765 466777776 4 66777776 66555444

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.26  E-value=2.8e-09  Score=110.82  Aligned_cols=272  Identities=8%  Similarity=-0.073  Sum_probs=170.7

Q ss_pred             EEEEeee--cCCCceeEEEEcCCCceEeeeccee--eecCccceeEEEeec--ceEeecCCCccEecccCCCCceeEEec
Q 006825          303 EFVVNEI--QEDGTWKKVKEVGTGRQLTIEEFEM--CVGHSPIVQELMRRQ--NVEEGNKDSFDLNNNGSSGGGMKSKKK  376 (630)
Q Consensus       303 ~~~v~e~--~~dg~~~~l~dv~TG~~lt~eef~~--l~GHs~~V~~Lafs~--~laSgS~D~tvr~vWD~~tG~~~~~lk  376 (630)
                      .|+++|.  +.......+.|..||+.+..- +..  -.......+.|++..  ..++...++++. +||..+++.+.++.
T Consensus         4 ~~v~neg~~g~~~~~l~~~d~~t~~~~~~i-~~~~n~~~lg~~~~~i~~~~~~lyv~~~~~~~v~-viD~~t~~~~~~i~   81 (328)
T 3dsm_A            4 LFITNEGNFQYSNATLSYYDPATCEVENEV-FYRANGFKLGDVAQSMVIRDGIGWIVVNNSHVIF-AIDINTFKEVGRIT   81 (328)
T ss_dssp             EEEEECCCTTSCCBEEEEEETTTTEEECSH-HHHHHSSCCBSCEEEEEEETTEEEEEEGGGTEEE-EEETTTCCEEEEEE
T ss_pred             EEEEecCCCCCCCceEEEEECCCCEEhhhh-HhhhcCcccCccceEEEEECCEEEEEEcCCCEEE-EEECcccEEEEEcC
Confidence            3566664  333345678888888866111 110  011224567777766  455556678999 99999999988886


Q ss_pred             CCccCCEEEEEEcCCCCeEEeecCCC-----C--Ccc----cc-CC----cceEEEeecCCCeEEEec--CCcEEEEEeC
Q 006825          377 GSWFKSIRTVASSVTGHKERRSSDER-----D--TSS----EK-GG----RRSSSATDDSQDVSFHGQ--ERVRVRQYGK  438 (630)
Q Consensus       377 ~gH~~~V~sVAfSpdG~~lasgS~D~-----d--t~s----~~-gh----~~~Vsa~~~s~d~l~Sgs--~Dg~VriWd~  438 (630)
                        .......++++++|+..++...+.     +  +..    .. +.    ......+.+....++.+.  .+.+|.+||.
T Consensus        82 --~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~~~~~lyv~~~~~~~~v~viD~  159 (328)
T 3dsm_A           82 --GFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQYGKYVYVNCWSYQNRILKIDT  159 (328)
T ss_dssp             --CCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEEETTEEEEEECTTCCEEEEEET
T ss_pred             --CCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEEECCEEEEEcCCCCCEEEEEEC
Confidence              346788999999997666653333     1  111    11 11    001112222223344443  4889999999


Q ss_pred             CCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCC----------CcEEEEECcCCceeeeeecccccCcccceEE
Q 006825          439 SCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGED----------CVIHVWQVVESERKGELLEKQEDGHLNMLLL  508 (630)
Q Consensus       439 ~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~D----------gtIrVWDl~tg~~~~~l~~~~~~gh~~~V~s  508 (630)
                      .+.++     +.++... .....++++|+|++++++..+          +.|.+||..+++....+.    .........
T Consensus       160 ~t~~~-----~~~i~~g-~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~----~~~g~~p~~  229 (328)
T 3dsm_A          160 ETDKV-----VDELTIG-IQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFK----FKLGDWPSE  229 (328)
T ss_dssp             TTTEE-----EEEEECS-SCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEE----CCTTCCCEE
T ss_pred             CCCeE-----EEEEEcC-CCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEe----cCCCCCcee
Confidence            87753     3334322 235689999999988877655          789999999887665542    111235788


Q ss_pred             EEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeC-CCCceE-E-eccCCCCEEEEEEcCC--CeEEE
Q 006825          509 ANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPIC-S-FQGHLDDVLDLSWSKS--QHLLS  583 (630)
Q Consensus       509 vafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~-t-L~GHs~~V~sLafSPd--~~LaS  583 (630)
                      ++++|+++++..+..  .|                       .+|+. +++... . +..+......++++|+  .++++
T Consensus       230 la~~~d~~~lyv~~~--~v-----------------------~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva  284 (328)
T 3dsm_A          230 VQLNGTRDTLYWINN--DI-----------------------WRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVA  284 (328)
T ss_dssp             EEECTTSCEEEEESS--SE-----------------------EEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEE
T ss_pred             EEEecCCCEEEEEcc--EE-----------------------EEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEE
Confidence            999999888877643  55                       45555 333221 1 1222456889999995  55666


Q ss_pred             E----ECCCcEEEEeCCCCcEEEEEecCCceEEEE
Q 006825          584 S----SMDKTVRLWHLSSKTCLKIFSHSDYDISLV  614 (630)
Q Consensus       584 g----S~DgtVrIWDl~tg~~l~t~~H~~~V~sVa  614 (630)
                      .    ..+++|.+||.. |+.+.++.-......++
T Consensus       285 ~~~~y~~~~~V~v~d~~-g~~~~~i~~G~~P~~~~  318 (328)
T 3dsm_A          285 DAIDYQQQGIVYRYSPQ-GKLIDEFYVGIIPGAFC  318 (328)
T ss_dssp             ECTTSSSEEEEEEECTT-CCEEEEEEEEESEEEEE
T ss_pred             cccccccCCEEEEECCC-CCEEEEEEeccCcceEE
Confidence            6    678999999998 99999887333334444

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.23  E-value=2.3e-09  Score=109.45  Aligned_cols=223  Identities=8%  Similarity=-0.100  Sum_probs=148.1

Q ss_pred             eEEEEcCCCceEeeecceeeecCc-cceeEEEeec---ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCC
Q 006825          316 KKVKEVGTGRQLTIEEFEMCVGHS-PIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVT  391 (630)
Q Consensus       316 ~~l~dv~TG~~lt~eef~~l~GHs-~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpd  391 (630)
                      ..++|..||+.+     -++..|. ..+..+++.|   .++  +.++.+. .||. +|+.+.+++.++...+.++++.++
T Consensus        17 v~~~d~~tG~~~-----w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~-~~d~-~G~~~W~~~~~~~~~~~~~~~~~d   87 (276)
T 3no2_A           17 IAIINKDTKEIV-----WEYPLEKGWECNSVAATKAGEILF--SYSKGAK-MITR-DGRELWNIAAPAGCEMQTARILPD   87 (276)
T ss_dssp             EEEEETTTTEEE-----EEEECCTTCCCCEEEECTTSCEEE--ECBSEEE-EECT-TSCEEEEEECCTTCEEEEEEECTT
T ss_pred             EEEEECCCCeEE-----EEeCCCccCCCcCeEECCCCCEEE--eCCCCEE-EECC-CCCEEEEEcCCCCccccccEECCC
Confidence            456777777777     4444443 4577788887   455  4578899 9999 899999998544457889999999


Q ss_pred             CCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEE
Q 006825          392 GHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYL  471 (630)
Q Consensus       392 G~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~L  471 (630)
                      |+++++.+.+                            .++|..++...+.+........+.++......+++.++|++|
T Consensus        88 G~~lv~~~~~----------------------------~~~v~~vd~~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~l  139 (276)
T 3no2_A           88 GNALVAWCGH----------------------------PSTILEVNMKGEVLSKTEFETGIERPHAQFRQINKNKKGNYL  139 (276)
T ss_dssp             SCEEEEEEST----------------------------TEEEEEECTTSCEEEEEEECCSCSSGGGSCSCCEECTTSCEE
T ss_pred             CCEEEEecCC----------------------------CCEEEEEeCCCCEEEEEeccCCCCcccccccCceECCCCCEE
Confidence            9988754321                            222333332211110000000112333455567889999999


Q ss_pred             EEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccE
Q 006825          472 ASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPET  551 (630)
Q Consensus       472 ASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~  551 (630)
                      ++...++.|.+||.. |+.+.++.     .. .....+...+++.+++++..++.|                       .
T Consensus       140 v~~~~~~~v~~~d~~-G~~~w~~~-----~~-~~~~~~~~~~~g~~~v~~~~~~~v-----------------------~  189 (276)
T 3no2_A          140 VPLFATSEVREIAPN-GQLLNSVK-----LS-GTPFSSAFLDNGDCLVACGDAHCF-----------------------V  189 (276)
T ss_dssp             EEETTTTEEEEECTT-SCEEEEEE-----CS-SCCCEEEECTTSCEEEECBTTSEE-----------------------E
T ss_pred             EEecCCCEEEEECCC-CCEEEEEE-----CC-CCccceeEcCCCCEEEEeCCCCeE-----------------------E
Confidence            999999999999998 88877752     11 345567788999999988887777                       5


Q ss_pred             EEeCC-CCceEEeccCC------CCEEEEEEcCC-CeEEEEECC--------CcEEEEeC-CCCcEEEEEe
Q 006825          552 VFALS-DKPICSFQGHL------DDVLDLSWSKS-QHLLSSSMD--------KTVRLWHL-SSKTCLKIFS  605 (630)
Q Consensus       552 Vwdls-gk~l~tL~GHs------~~V~sLafSPd-~~LaSgS~D--------gtVrIWDl-~tg~~l~t~~  605 (630)
                      .++.. |+.+.++..+.      ..+..++..++ .++++....        +..+++.+ .+|+.+.+|.
T Consensus       190 ~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~~g~~~~~~~~~~~~~~~~~~~g~~~W~~~  260 (276)
T 3no2_A          190 QLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNWQGHDREAGKGKHPQLVEIDSEGKVVWQLN  260 (276)
T ss_dssp             EECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEECTTCTTGGGSCCCSEEEECTTSBEEEEEC
T ss_pred             EEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEeccCccccccccCCceEEEECCCCCEEEEec
Confidence            66663 77777765332      33788888888 666666421        23467776 5789888886

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.18  E-value=2.5e-09  Score=113.09  Aligned_cols=231  Identities=12%  Similarity=0.043  Sum_probs=134.7

Q ss_pred             cCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCcEEE
Q 006825          355 NKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVR  434 (630)
Q Consensus       355 S~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~Vr  434 (630)
                      ..|+++. +||..+++.+.++. .+...  .++|+|||+++..++...                 ..  ...|..++.|.
T Consensus        28 ~~d~~v~-v~D~~t~~~~~~i~-~g~~p--~i~~spdg~~lyv~~~~~-----------------~~--~~~g~~~~~v~   84 (361)
T 2oiz_A           28 LTESRVH-VYDYTNGKFLGMVP-TAFNG--HVQVSNDGKKIYTMTTYH-----------------ER--ITRGKRSDVVE   84 (361)
T ss_dssp             GGGCEEE-EEETTTCCEEEEEE-CCEEE--EEEECTTSSEEEEEEEEE-----------------TT--SSSSCEEEEEE
T ss_pred             cccCeEE-EEECCCCeEEEEec-CCCCC--ceEECCCCCEEEEEEecc-----------------cc--cccCCCCCEEE
Confidence            3477888 99999999998888 44444  799999999886432100                 00  00122356799


Q ss_pred             EEeCCCCcccceeeeeEecc------cCcCEEEEEEccCCCEEEEEeC--CCcEEEEECcCCceeee-eecccccCcccc
Q 006825          435 QYGKSCKDLTALYKCQEIQA------HNGSIWSIKFSLDGRYLASAGE--DCVIHVWQVVESERKGE-LLEKQEDGHLNM  505 (630)
Q Consensus       435 iWd~~~~el~~~~~v~tL~g------Ht~~V~sVaFSpDG~~LASgS~--DgtIrVWDl~tg~~~~~-l~~~~~~gh~~~  505 (630)
                      +||..+.+.     ++++..      +......|+|+|||++|+++..  +++|.+||+.+++.+.. +..   .+    
T Consensus        85 v~d~~t~~~-----~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~---~~----  152 (361)
T 2oiz_A           85 VWDADKLTF-----EKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAA---AG----  152 (361)
T ss_dssp             EEETTTCCE-----EEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGG---TT----
T ss_pred             EEECcCCcE-----EEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecC---CC----
Confidence            999876543     334432      2345678999999999998874  68999999999887766 321   11    


Q ss_pred             eEEEEECCCC-CEEEEeeCCCeeeeecccc-cccc-----------------cc----------cccCccccccEEEeCC
Q 006825          506 LLLANGSPEP-TSLSPKHLDNHLEKKRRGR-SINR-----------------KS----------LSLDHMVVPETVFALS  556 (630)
Q Consensus       506 V~svafSpdg-~~lasgs~Dg~I~i~~~~~-~~~~-----------------~s----------~s~d~~i~~~~Vwdls  556 (630)
                      ...+.+.|++ ..+++.+.|+.+.++.... ....                 ..          ...++.+   .++++.
T Consensus       153 ~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v---~v~d~~  229 (361)
T 2oiz_A          153 CWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNV---YSADFS  229 (361)
T ss_dssp             EEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEE---EEEECS
T ss_pred             cceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCceEEEecccCCEEEEEeCCCeE---EEEEec
Confidence            1112333332 3333333444333322211 0000                 00          0011111   344442


Q ss_pred             CCce---EEec--c----CC----CCEEEEEEcCC-CeEEEEEC-----------CCcEEEEeCCCCcEEEEEe-cCCce
Q 006825          557 DKPI---CSFQ--G----HL----DDVLDLSWSKS-QHLLSSSM-----------DKTVRLWHLSSKTCLKIFS-HSDYD  610 (630)
Q Consensus       557 gk~l---~tL~--G----Hs----~~V~sLafSPd-~~LaSgS~-----------DgtVrIWDl~tg~~l~t~~-H~~~V  610 (630)
                      ...+   ..+.  .    +.    .....++|+|+ +++..+..           .++|.+||+.+++.+.++. +.  +
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p  307 (361)
T 2oiz_A          230 GDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--A  307 (361)
T ss_dssp             SSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--C
T ss_pred             CCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--e
Confidence            2111   1111  0    00    11112789998 66654432           3589999999999999998 55  8


Q ss_pred             EEEE-cCCCcEEEEec
Q 006825          611 ISLV-DRLMLRFAYGA  625 (630)
Q Consensus       611 ~sVa-s~~~~~lAsgs  625 (630)
                      ++|+ ++++..+.++.
T Consensus       308 ~~ia~spdg~~l~v~n  323 (361)
T 2oiz_A          308 LSMTIDQQRNLMLTLD  323 (361)
T ss_dssp             CEEEEETTTTEEEEEC
T ss_pred             eEEEECCCCCEEEEeC
Confidence            8999 88888776654

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.17  E-value=1.7e-07  Score=93.19  Aligned_cols=250  Identities=5%  Similarity=-0.088  Sum_probs=162.3

Q ss_pred             ecCccceeEEEeec---ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCC-----CC-cc
Q 006825          336 VGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDER-----DT-SS  406 (630)
Q Consensus       336 ~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~-----dt-~s  406 (630)
                      ..+...+..|++.+   ..++...++.+. +||.. ++........+...+.++++.++|...++...+.     +. ..
T Consensus        11 ~~~~~~~~~i~~d~~g~l~v~~~~~~~v~-~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~   88 (299)
T 2z2n_A           11 TNQDTGPYGITVSDKGKVWITQHKANMIS-CINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKKGI   88 (299)
T ss_dssp             CSSSCCEEEEEECTTSCEEEEETTTTEEE-EECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTTSC
T ss_pred             CCcCCCccceEECCCCCEEEEecCCCcEE-EEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCCCc
Confidence            34556788888887   344444467888 99988 6544333224567899999999999877655332     11 11


Q ss_pred             -----ccCCcceEEEeecCCCe-E-EEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCc
Q 006825          407 -----EKGGRRSSSATDDSQDV-S-FHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCV  479 (630)
Q Consensus       407 -----~~gh~~~Vsa~~~s~d~-l-~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~Dgt  479 (630)
                           .......+..+.+.+++ + ++...++.|.+|+. .++..    ...+..+...+..|++.++|+++++...++.
T Consensus        89 ~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~----~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~  163 (299)
T 2z2n_A           89 IKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIR----EYELPNKGSYPSFITLGSDNALWFTENQNNA  163 (299)
T ss_dssp             EEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEE----EEECSSTTCCEEEEEECTTSCEEEEETTTTE
T ss_pred             EEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEE----EecCCCCCCCCceEEEcCCCCEEEEeCCCCE
Confidence                 11233356666666665 4 44556789999988 44321    1223345567999999999998888777889


Q ss_pred             EEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeCCCCc
Q 006825          480 IHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKP  559 (630)
Q Consensus       480 IrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~  559 (630)
                      |.+||. +++.....    .......+..+++.+++.++++...++.|                       .+|+.+++.
T Consensus       164 i~~~~~-~g~~~~~~----~~~~~~~~~~i~~~~~g~l~v~~~~~~~i-----------------------~~~~~~g~~  215 (299)
T 2z2n_A          164 IGRITE-SGDITEFK----IPTPASGPVGITKGNDDALWFVEIIGNKI-----------------------GRITTSGEI  215 (299)
T ss_dssp             EEEECT-TCCEEEEE----CSSTTCCEEEEEECTTSSEEEEETTTTEE-----------------------EEECTTCCE
T ss_pred             EEEEcC-CCcEEEee----CCCCCCcceeEEECCCCCEEEEccCCceE-----------------------EEECCCCcE
Confidence            999998 66543321    12334567899999999988777666777                       445553332


Q ss_pred             eE-EeccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCCCcEEEEEe---cCCceEEEEcCCCcEEE
Q 006825          560 IC-SFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS---HSDYDISLVDRLMLRFA  622 (630)
Q Consensus       560 l~-tL~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg~~l~t~~---H~~~V~sVas~~~~~lA  622 (630)
                      .. .+..+...+.++++.++ .++++...++.|.+||. +++ +..+.   +...+.+++-+.+..++
T Consensus       216 ~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~-~~~~~~~~~~~~~~~i~~~~g~l~v  281 (299)
T 2z2n_A          216 TEFKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTS-NNI-IEEYPIQIKSAEPHGICFDGETIWF  281 (299)
T ss_dssp             EEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEET-TTE-EEEEECSSSSCCEEEEEECSSCEEE
T ss_pred             EEEECCCCCCCceeEEECCCCCEEEeccCCceEEEECC-CCc-eEEEeCCCCCCccceEEecCCCEEE
Confidence            22 12345567899999999 66666657899999998 554 33442   55678877743333333

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.13  E-value=3.9e-09  Score=121.80  Aligned_cols=247  Identities=13%  Similarity=0.021  Sum_probs=150.7

Q ss_pred             ceeecCCCCcccCCCccccccCCCCCcccccccEEEEECCCCcEEEEeeecCCCceeEEEEcCCCceEeeecceeeecCc
Q 006825          260 SMSINGNGNYIGNSGEVVEDFDGNGTAGVAEQGCLIKNLDNGKEFVVNEIQEDGTWKKVKEVGTGRQLTIEEFEMCVGHS  339 (630)
Q Consensus       260 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~LddG~~~~v~e~~~dg~~~~l~dv~TG~~lt~eef~~l~GHs  339 (630)
                      ++++||||++|+..++         ..+.+...++|+++++|+..-. ...         +                   
T Consensus       167 ~~~~SPDG~~la~~~~---------~~G~e~~~i~v~dl~tg~~~~~-~~~---------~-------------------  208 (741)
T 1yr2_A          167 AWAASDDGRLLAYSVQ---------DGGSDWRTVKFVGVADGKPLAD-ELK---------W-------------------  208 (741)
T ss_dssp             EEEECTTSSEEEEEEE---------ETTCSEEEEEEEETTTCCEEEE-EEE---------E-------------------
T ss_pred             eEEECCCCCEEEEEEc---------CCCCceEEEEEEECCCCCCCCc-cCC---------C-------------------
Confidence            3699999999966663         1233445677788877765321 000         0                   


Q ss_pred             cceeEEEeec--ceEeecCCC--------------ccEecccCCCCce--eEEec-CCccCCEEEEEEcCCCCeEEeecC
Q 006825          340 PIVQELMRRQ--NVEEGNKDS--------------FDLNNNGSSGGGM--KSKKK-GSWFKSIRTVASSVTGHKERRSSD  400 (630)
Q Consensus       340 ~~V~~Lafs~--~laSgS~D~--------------tvr~vWD~~tG~~--~~~lk-~gH~~~V~sVAfSpdG~~lasgS~  400 (630)
                      ..+..++|+|  .|+.++.|.              .+. +|++.++..  ...+. ..|...+..++|||||++|+..+.
T Consensus       209 ~~~~~~~wspD~~l~~~~~~~~~~~~~~~~~~~~~~v~-~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~  287 (741)
T 1yr2_A          209 VKFSGLAWLGNDALLYSRFAEPKEGQAFQALNYNQTVW-LHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSS  287 (741)
T ss_dssp             EESCCCEESTTSEEEEEECCCC--------CCCCCEEE-EEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEE
T ss_pred             ceeccEEEECCCEEEEEEecCcccccccccCCCCCEEE-EEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEE
Confidence            0012233333  233333333              377 889888763  22222 134456889999999998875432


Q ss_pred             CCCCccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCC---
Q 006825          401 ERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGED---  477 (630)
Q Consensus       401 D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~D---  477 (630)
                      +.                  .      .....|++||+.+++..   +...|..+...+.... +|+|+.|+..+.+   
T Consensus       288 ~~------------------~------~~~~~l~~~d~~~~~~~---~~~~l~~~~~~~~~~~-~~dg~~l~~~s~~~~~  339 (741)
T 1yr2_A          288 EG------------------T------DPVNTVHVARVTNGKIG---PVTALIPDLKAQWDFV-DGVGDQLWFVSGDGAP  339 (741)
T ss_dssp             CT------------------T------CSCCEEEEEEEETTEEC---CCEEEECSSSSCEEEE-EEETTEEEEEECTTCT
T ss_pred             cc------------------C------CCcceEEEEECCCCCCc---ccEEecCCCCceEEEE-eccCCEEEEEECCCCC
Confidence            21                  0      02447899998765210   1244556666665553 4899988888764   


Q ss_pred             -CcEEEEECcCCc-eeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeC
Q 006825          478 -CVIHVWQVVESE-RKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL  555 (630)
Q Consensus       478 -gtIrVWDl~tg~-~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl  555 (630)
                       +.|.+||+.++. ....++    ..+...+..+.+. ++.++++...++..++                     .++++
T Consensus       340 ~~~l~~~d~~~~~~~~~~l~----~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l---------------------~~~~~  393 (741)
T 1yr2_A          340 LKKIVRVDLSGSTPRFDTVV----PESKDNLESVGIA-GNRLFASYIHDAKSQV---------------------LAFDL  393 (741)
T ss_dssp             TCEEEEEECSSSSCEEEEEE----CCCSSEEEEEEEE-BTEEEEEEEETTEEEE---------------------EEEET
T ss_pred             CCEEEEEeCCCCccccEEEe----cCCCCeEEEEEEE-CCEEEEEEEECCEEEE---------------------EEEeC
Confidence             449999998752 334432    3444456667776 5677778878887632                     23344


Q ss_pred             CCCceEEeccC-CCCEEEEEEcCC-CeEE-EEE---CCCcEEEEeCCCCc
Q 006825          556 SDKPICSFQGH-LDDVLDLSWSKS-QHLL-SSS---MDKTVRLWHLSSKT  599 (630)
Q Consensus       556 sgk~l~tL~GH-s~~V~sLafSPd-~~La-SgS---~DgtVrIWDl~tg~  599 (630)
                      .++.+..+..+ ...|..++|+|+ ..|+ +.+   ..++|++||+.+++
T Consensus       394 ~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~  443 (741)
T 1yr2_A          394 DGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAK  443 (741)
T ss_dssp             TSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred             CCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence            56767777653 677899999998 5444 333   35899999998876

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.13  E-value=1e-08  Score=101.31  Aligned_cols=196  Identities=7%  Similarity=-0.068  Sum_probs=133.2

Q ss_pred             cceeEEEeec--c-eEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEE
Q 006825          340 PIVQELMRRQ--N-VEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSA  416 (630)
Q Consensus       340 ~~V~~Lafs~--~-laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa  416 (630)
                      ..+..|++.+  . .++.. ++.+. +||..++.. ..+.......+..+++.++|+..++                   
T Consensus        67 ~~p~~i~~~~~g~l~v~~~-~~~i~-~~d~~~~~~-~~~~~~~~~~p~~i~~~~~g~l~v~-------------------  124 (270)
T 1rwi_B           67 YQPQGLAVDGAGTVYVTDF-NNRVV-TLAAGSNNQ-TVLPFDGLNYPEGLAVDTQGAVYVA-------------------  124 (270)
T ss_dssp             CSCCCEEECTTCCEEEEET-TTEEE-EECTTCSCC-EECCCCSCSSEEEEEECTTCCEEEE-------------------
T ss_pred             CCcceeEECCCCCEEEEcC-CCEEE-EEeCCCceE-eeeecCCcCCCcceEECCCCCEEEE-------------------
Confidence            4566777776  2 33333 77888 899866544 3333244567889999998875542                   


Q ss_pred             eecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeec
Q 006825          417 TDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLE  496 (630)
Q Consensus       417 ~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~  496 (630)
                                ...++.|.+|+......     ......+...+..|+++++|+++++...++.|.+|+..........  
T Consensus       125 ----------~~~~~~i~~~~~~~~~~-----~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~--  187 (270)
T 1rwi_B          125 ----------DRGNNRVVKLAAGSKTQ-----TVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLP--  187 (270)
T ss_dssp             ----------EGGGTEEEEECTTCCSC-----EECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEECC--
T ss_pred             ----------ECCCCEEEEEECCCcee-----EeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCceEeec--
Confidence                      23356788886543321     1112233446789999999998888878899999998765543321  


Q ss_pred             ccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeCCCCceEEec-cCCCCEEEEEE
Q 006825          497 KQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQ-GHLDDVLDLSW  575 (630)
Q Consensus       497 ~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL~-GHs~~V~sLaf  575 (630)
                         ..+...+..+++.++|.++++...++.|                       .+|+..+..+..+. .+...+.++++
T Consensus       188 ---~~~~~~p~~i~~d~~g~l~v~~~~~~~v-----------------------~~~~~~~~~~~~~~~~~~~~p~~i~~  241 (270)
T 1rwi_B          188 ---FTDITAPWGIAVDEAGTVYVTEHNTNQV-----------------------VKLLAGSTTSTVLPFTGLNTPLAVAV  241 (270)
T ss_dssp             ---CSSCCSEEEEEECTTCCEEEEETTTSCE-----------------------EEECTTCSCCEECCCCSCSCEEEEEE
T ss_pred             ---ccCCCCceEEEECCCCCEEEEECCCCcE-----------------------EEEcCCCCcceeeccCCCCCceeEEE
Confidence               2333667899999999888887777777                       55665444333332 34467899999


Q ss_pred             cCC-CeEEEEECCCcEEEEeCCCCcE
Q 006825          576 SKS-QHLLSSSMDKTVRLWHLSSKTC  600 (630)
Q Consensus       576 SPd-~~LaSgS~DgtVrIWDl~tg~~  600 (630)
                      .++ .++++...+++|+++++...+.
T Consensus       242 ~~~g~l~v~~~~~~~v~~~~~~~~~~  267 (270)
T 1rwi_B          242 DSDRTVYVADRGNDRVVKLTSLEHHH  267 (270)
T ss_dssp             CTTCCEEEEEGGGTEEEEECCCGGGS
T ss_pred             CCCCCEEEEECCCCEEEEEcCCCccc
Confidence            999 8888889999999999876543

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.13  E-value=1.7e-08  Score=101.76  Aligned_cols=233  Identities=8%  Similarity=-0.013  Sum_probs=150.0

Q ss_pred             eeecCccceeEEEeec---ceEe-------ecCCCccEecccCCCCceeEEec---CCccCCEEEEEEcCC-CCeEEeec
Q 006825          334 MCVGHSPIVQELMRRQ---NVEE-------GNKDSFDLNNNGSSGGGMKSKKK---GSWFKSIRTVASSVT-GHKERRSS  399 (630)
Q Consensus       334 ~l~GHs~~V~~Lafs~---~laS-------gS~D~tvr~vWD~~tG~~~~~lk---~gH~~~V~sVAfSpd-G~~lasgS  399 (630)
                      .+.+.-.....++|.+   .+++       +..++.+. +||..+|+......   .++...+.+++++++ |++.++..
T Consensus        12 ~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~-~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~   90 (314)
T 1pjx_A           12 KVTEDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEIL-RIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADM   90 (314)
T ss_dssp             EEECCCTTCEEEEECTTSCEEEEETTCEETTEECCEEE-EECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEET
T ss_pred             hhhccCCCccCceECCCCCEEEEEeccccCCCCCCEEE-EEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEEC
Confidence            3344444556777765   3444       56788899 99988887653322   136678999999999 88666554


Q ss_pred             CCC----CC-cc---c-c----C-CcceEEEeecCCCe-EEEec-CC---------------cEEEEEeCCCCcccceee
Q 006825          400 DER----DT-SS---E-K----G-GRRSSSATDDSQDV-SFHGQ-ER---------------VRVRQYGKSCKDLTALYK  448 (630)
Q Consensus       400 ~D~----dt-~s---~-~----g-h~~~Vsa~~~s~d~-l~Sgs-~D---------------g~VriWd~~~~el~~~~~  448 (630)
                      .++    +. +.   . .    + +...+..+.+.+++ ++.+. .+               +.|..|+.. +++     
T Consensus        91 ~~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~-----  164 (314)
T 1pjx_A           91 RLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQM-----  164 (314)
T ss_dssp             TTEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCE-----
T ss_pred             CCCEEEEeCCCCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCE-----
Confidence            332    10 11   1 1    1 11235566666666 44333 33               577778765 332     


Q ss_pred             eeEecccCcCEEEEEEc----cCCCEE-EEEeCCCcEEEEECc-CCceeeeeecccccCcc-cceEEEEECCCCCEEEEe
Q 006825          449 CQEIQAHNGSIWSIKFS----LDGRYL-ASAGEDCVIHVWQVV-ESERKGELLEKQEDGHL-NMLLLANGSPEPTSLSPK  521 (630)
Q Consensus       449 v~tL~gHt~~V~sVaFS----pDG~~L-ASgS~DgtIrVWDl~-tg~~~~~l~~~~~~gh~-~~V~svafSpdg~~lasg  521 (630)
                       ..+..+......++|+    |+|+.| ++...++.|.+|++. ++............++. .....++++++|.++++.
T Consensus       165 -~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~  243 (314)
T 1pjx_A          165 -IQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVAN  243 (314)
T ss_dssp             -EEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEE
T ss_pred             -EEeccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEE
Confidence             2233344567899999    999755 444678999999986 34321110111123333 557789999999998887


Q ss_pred             eCCCeeeeecccccccccccccCccccccEEEeCC-CCceEEeccCCCCEEEEEEcCC-C-eEEEEECCCcEEEEeCCC
Q 006825          522 HLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALS-DKPICSFQGHLDDVLDLSWSKS-Q-HLLSSSMDKTVRLWHLSS  597 (630)
Q Consensus       522 s~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdls-gk~l~tL~GHs~~V~sLafSPd-~-~LaSgS~DgtVrIWDl~t  597 (630)
                      ..++.|                       .+|+.. ++.+..+..+...+.+++|+|+ + ++++...++.|..|++..
T Consensus       244 ~~~~~i-----------------------~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~  299 (314)
T 1pjx_A          244 WGSSHI-----------------------EVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR  299 (314)
T ss_dssp             ETTTEE-----------------------EEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred             cCCCEE-----------------------EEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence            777777                       667774 7777777777788999999999 6 455666678999999875

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.13  E-value=1.1e-08  Score=100.97  Aligned_cols=219  Identities=6%  Similarity=-0.087  Sum_probs=142.2

Q ss_pred             ceeEEEeec---ceE-eecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEE
Q 006825          341 IVQELMRRQ---NVE-EGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSA  416 (630)
Q Consensus       341 ~V~~Lafs~---~la-SgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa  416 (630)
                      ....|++.+   ..+ +...++.+. +|+..++....... .+...+.++++.++|+++++                   
T Consensus        25 ~p~~i~~~~~g~l~v~~~~~~~~i~-~~~~~~~~~~~~~~-~~~~~p~~i~~~~~g~l~v~-------------------   83 (270)
T 1rwi_B           25 SPSGVAVDSAGNVYVTSEGMYGRVV-KLATGSTGTTVLPF-NGLYQPQGLAVDGAGTVYVT-------------------   83 (270)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEE-EECC-----EECCC-CSCCSCCCEEECTTCCEEEE-------------------
T ss_pred             CccceEECCCCCEEEEccCCCCcEE-EecCCCcccceEee-CCcCCcceeEECCCCCEEEE-------------------
Confidence            456677766   244 446778888 88876554332222 45566778888888764432                   


Q ss_pred             eecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEec-ccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeee
Q 006825          417 TDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQ-AHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELL  495 (630)
Q Consensus       417 ~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~-gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~  495 (630)
                                .. ++.|.+|+......      ..+. .....+..|+++++|+++++...++.|.+|+..+......  
T Consensus        84 ----------~~-~~~i~~~d~~~~~~------~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~--  144 (270)
T 1rwi_B           84 ----------DF-NNRVVTLAAGSNNQ------TVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVL--  144 (270)
T ss_dssp             ----------ET-TTEEEEECTTCSCC------EECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEEC--
T ss_pred             ----------cC-CCEEEEEeCCCceE------eeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEee--
Confidence                      22 56789998766532      1222 2335789999999999888888889999997654433221  


Q ss_pred             cccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeCCCCceEEe-ccCCCCEEEEE
Q 006825          496 EKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSF-QGHLDDVLDLS  574 (630)
Q Consensus       496 ~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL-~GHs~~V~sLa  574 (630)
                         .......+..++++++++++++...++.|                       .+|+..+...... ..+...+..|+
T Consensus       145 ---~~~~~~~p~~i~~~~~g~l~v~~~~~~~i-----------------------~~~~~~~~~~~~~~~~~~~~p~~i~  198 (270)
T 1rwi_B          145 ---PFTGLNDPDGVAVDNSGNVYVTDTDNNRV-----------------------VKLEAESNNQVVLPFTDITAPWGIA  198 (270)
T ss_dssp             ---CCCSCCSCCCEEECTTCCEEEEEGGGTEE-----------------------EEECTTTCCEEECCCSSCCSEEEEE
T ss_pred             ---ccccCCCceeEEEeCCCCEEEEECCCCEE-----------------------EEEecCCCceEeecccCCCCceEEE
Confidence               12223456789999999988877667777                       5555544333322 23446789999


Q ss_pred             EcCC-CeEEEEECCCcEEEEeCCCCcEEEEEe-cCCceEEEE-cCCCcEEEEec
Q 006825          575 WSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYDISLV-DRLMLRFAYGA  625 (630)
Q Consensus       575 fSPd-~~LaSgS~DgtVrIWDl~tg~~l~t~~-H~~~V~sVa-s~~~~~lAsgs  625 (630)
                      +.++ .++++...++.|.+|+........... +...+.+++ ++++..++++.
T Consensus       199 ~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~  252 (270)
T 1rwi_B          199 VDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADR  252 (270)
T ss_dssp             ECTTCCEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCCEEEEEG
T ss_pred             ECCCCCEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCCEEEEEC
Confidence            9999 777777788999999997655443222 446788998 77776666553

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.07  E-value=1.8e-08  Score=116.15  Aligned_cols=236  Identities=11%  Similarity=-0.047  Sum_probs=145.0

Q ss_pred             cCccceeEEEeec---ceEeecCC-----CccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCcccc
Q 006825          337 GHSPIVQELMRRQ---NVEEGNKD-----SFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEK  408 (630)
Q Consensus       337 GHs~~V~~Lafs~---~laSgS~D-----~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~  408 (630)
                      +|...+..++|+|   .||.++.+     .+++ +||+.+|+.+....  +...+..++|+|| +.|+.++.+....   
T Consensus       160 ~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~-v~dl~tg~~~~~~~--~~~~~~~~~wspD-~~l~~~~~~~~~~---  232 (741)
T 1yr2_A          160 DGATALDAWAASDDGRLLAYSVQDGGSDWRTVK-FVGVADGKPLADEL--KWVKFSGLAWLGN-DALLYSRFAEPKE---  232 (741)
T ss_dssp             ---EEEEEEEECTTSSEEEEEEEETTCSEEEEE-EEETTTCCEEEEEE--EEEESCCCEESTT-SEEEEEECCCC-----
T ss_pred             CCCEEEEeEEECCCCCEEEEEEcCCCCceEEEE-EEECCCCCCCCccC--CCceeccEEEECC-CEEEEEEecCccc---
Confidence            4445678889998   45554433     5688 99999998765322  1112347899999 9888776553100   


Q ss_pred             CCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCC-----cEEEE
Q 006825          409 GGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDC-----VIHVW  483 (630)
Q Consensus       409 gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~Dg-----tIrVW  483 (630)
                      +            ..+........|++|++.++.... .++.....|...+..+.|+|||++|+..+.++     .|++|
T Consensus       233 ~------------~~~~~~~~~~~v~~~~lgt~~~~~-~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~  299 (741)
T 1yr2_A          233 G------------QAFQALNYNQTVWLHRLGTPQSAD-QPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVA  299 (741)
T ss_dssp             ------------------CCCCCEEEEEETTSCGGGC-EEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEE
T ss_pred             c------------cccccCCCCCEEEEEECCCCchhC-EEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEE
Confidence            0            001111234579999987654211 12333344555689999999999998887654     89999


Q ss_pred             ECcCCce--eeeeecccccCcccceEEEEECCCCCEEEEeeCCC----eeeeecccccccccccccCccccccEEEeCCC
Q 006825          484 QVVESER--KGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDN----HLEKKRRGRSINRKSLSLDHMVVPETVFALSD  557 (630)
Q Consensus       484 Dl~tg~~--~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg----~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsg  557 (630)
                      |+.++..  ...+     ..+...+.... +|++..|+..+.++    .|                       .+|++.+
T Consensus       300 d~~~~~~~~~~~l-----~~~~~~~~~~~-~~dg~~l~~~s~~~~~~~~l-----------------------~~~d~~~  350 (741)
T 1yr2_A          300 RVTNGKIGPVTAL-----IPDLKAQWDFV-DGVGDQLWFVSGDGAPLKKI-----------------------VRVDLSG  350 (741)
T ss_dssp             EEETTEECCCEEE-----ECSSSSCEEEE-EEETTEEEEEECTTCTTCEE-----------------------EEEECSS
T ss_pred             ECCCCCCcccEEe-----cCCCCceEEEE-eccCCEEEEEECCCCCCCEE-----------------------EEEeCCC
Confidence            9987621  3333     22223333333 38888887766543    23                       5566633


Q ss_pred             --CceEE-eccCCCCEEEEEEcCCCeEEEEECCCcEEEEeCC-CCcEEEEEe--cCCceEEEE-cCCCcEE
Q 006825          558 --KPICS-FQGHLDDVLDLSWSKSQHLLSSSMDKTVRLWHLS-SKTCLKIFS--HSDYDISLV-DRLMLRF  621 (630)
Q Consensus       558 --k~l~t-L~GHs~~V~sLafSPd~~LaSgS~DgtVrIWDl~-tg~~l~t~~--H~~~V~sVa-s~~~~~l  621 (630)
                        ..... +..+...+..++|..+.++++...|+..+||.+. +++.++.+.  +...|..+. ++++..+
T Consensus       351 ~~~~~~~l~~~~~~~l~~~~~~~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l  421 (741)
T 1yr2_A          351 STPRFDTVVPESKDNLESVGIAGNRLFASYIHDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHA  421 (741)
T ss_dssp             SSCEEEEEECCCSSEEEEEEEEBTEEEEEEEETTEEEEEEEETTSCEEEECBCSSSCEEEEEECCBTCSCE
T ss_pred             CccccEEEecCCCCeEEEEEEECCEEEEEEEECCEEEEEEEeCCCCceeeccCCCCeEEEEeecCCCCCEE
Confidence              23333 3445555677888854788899999998888665 567777776  467788887 5554433

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.00  E-value=1.1e-06  Score=87.12  Aligned_cols=249  Identities=6%  Similarity=-0.088  Sum_probs=160.5

Q ss_pred             ccceeEEEeec---ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCC-----CC-cc---
Q 006825          339 SPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDER-----DT-SS---  406 (630)
Q Consensus       339 s~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~-----dt-~s---  406 (630)
                      ...+..|++.+   ..++...++.+. +||.. ++........+...+.++++.++|...++.....     +. +.   
T Consensus        19 ~~~p~~i~~d~~g~l~v~~~~~~~v~-~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~g~~~~   96 (300)
T 2qc5_A           19 DSGPYGITSSEDGKVWFTQHKANKIS-SLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKKGGFTE   96 (300)
T ss_dssp             TCCEEEEEECTTSCEEEEETTTTEEE-EECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTTSCEEE
T ss_pred             CCCcceeeECCCCCEEEEcCCCCeEE-EECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCCCCeEE
Confidence            34567777766   344445678888 89887 6554422224567899999999999777654332     11 11   


Q ss_pred             --ccCCcceEEEeecCCCe-E-EEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEE
Q 006825          407 --EKGGRRSSSATDDSQDV-S-FHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHV  482 (630)
Q Consensus       407 --~~gh~~~Vsa~~~s~d~-l-~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrV  482 (630)
                        .......+..+.+.+++ + ++....+.|..|+.. ++..    ...+......+..|++.++|+++++...++.|.+
T Consensus        97 ~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~----~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~  171 (300)
T 2qc5_A           97 YPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIY----EYDLPNKGSYPAFITLGSDNALWFTENQNNSIGR  171 (300)
T ss_dssp             EECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEE----EEECSSTTCCEEEEEECTTSSEEEEETTTTEEEE
T ss_pred             ecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEE----EccCCCCCCCceeEEECCCCCEEEEecCCCeEEE
Confidence              11122445566666555 4 444557889999876 4321    1123345567899999999998777777889999


Q ss_pred             EECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeCCCCceEE
Q 006825          483 WQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICS  562 (630)
Q Consensus       483 WDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~t  562 (630)
                      |+. +++... +.   ...+...+..+++.+++.++++....+.|                       .+|+.+++....
T Consensus       172 ~~~-~g~~~~-~~---~~~~~~~~~~i~~d~~g~l~v~~~~~~~i-----------------------~~~~~~g~~~~~  223 (300)
T 2qc5_A          172 ITN-TGKLEE-YP---LPTNAAAPVGITSGNDGALWFVEIMGNKI-----------------------GRITTTGEISEY  223 (300)
T ss_dssp             ECT-TCCEEE-EE---CSSTTCCEEEEEECTTSSEEEEETTTTEE-----------------------EEECTTCCEEEE
T ss_pred             ECC-CCcEEE-ee---CCCCCCCcceEEECCCCCEEEEccCCCEE-----------------------EEEcCCCcEEEE
Confidence            998 554432 21   13344567899999999888777666666                       445554433322


Q ss_pred             -eccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCCCcEEEEE--e-cCCceEEEE-cCCCcEEEEe
Q 006825          563 -FQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIF--S-HSDYDISLV-DRLMLRFAYG  624 (630)
Q Consensus       563 -L~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg~~l~t~--~-H~~~V~sVa-s~~~~~lAsg  624 (630)
                       +..+...+.+|++.++ .++++...++.|.+||. +++.. .+  . ....+.+++ ++.+..+...
T Consensus       224 ~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~-~~~~~~~~~~~~~i~~~~~g~l~v~~  289 (300)
T 2qc5_A          224 DIPTPNARPHAITAGKNSEIWFTEWGANQIGRITN-DNTIQ-EYQLQTENAEPHGITFGKDGSVWFAL  289 (300)
T ss_dssp             ECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECT-TSCEE-EEECCSTTCCCCCEEECTTSCEEEEC
T ss_pred             ECCCCCCCceEEEECCCCCEEEeccCCCeEEEECC-CCcEE-EEECCccCCccceeEeCCCCCEEEEc
Confidence             2345567899999999 66666666799999998 45443 33  3 456678888 6666655444

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.00  E-value=2.3e-06  Score=84.79  Aligned_cols=224  Identities=9%  Similarity=-0.084  Sum_probs=142.9

Q ss_pred             CccceeEEEeec---ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCC-----CC-cc--
Q 006825          338 HSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDER-----DT-SS--  406 (630)
Q Consensus       338 Hs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~-----dt-~s--  406 (630)
                      +...+..|++.+   ..++...++.+. .||.. |+............+..+++.++|.+.++...+.     +. ..  
T Consensus        55 ~~~~~~~i~~~~~g~l~v~~~~~~~i~-~~~~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~g~~~  132 (299)
T 2z2n_A           55 PDAKVMCLTISSDGEVWFTENAANKIG-RITKK-GIIKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITDDGKIR  132 (299)
T ss_dssp             TTCCEEEEEECTTSCEEEEETTTTEEE-EECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTTCCEE
T ss_pred             ccCceeeEEECCCCCEEEeCCCCCeEE-EECCC-CcEEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECCCCCEE
Confidence            345678888876   344555567788 88876 4432221113566899999999999877654432     11 11  


Q ss_pred             ---ccCCcceEEEeecCCCe-E-EEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEE
Q 006825          407 ---EKGGRRSSSATDDSQDV-S-FHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIH  481 (630)
Q Consensus       407 ---~~gh~~~Vsa~~~s~d~-l-~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIr  481 (630)
                         ...+...+..+.+.+++ + ++....+.|..|+. ++++..    ..+..+...+..|++.++|+++++...++.|.
T Consensus       133 ~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~----~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~  207 (299)
T 2z2n_A          133 EYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDITE----FKIPTPASGPVGITKGNDDALWFVEIIGNKIG  207 (299)
T ss_dssp             EEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEE----EECSSTTCCEEEEEECTTSSEEEEETTTTEEE
T ss_pred             EecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEE----eeCCCCCCcceeEEECCCCCEEEEccCCceEE
Confidence               12233445666666665 4 44455789999998 544321    12344556789999999999888777788999


Q ss_pred             EEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeCCCCceE
Q 006825          482 VWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPIC  561 (630)
Q Consensus       482 VWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~  561 (630)
                      +|+. ++.... +.   ...+...+..+++.++|.++++...++.|                       ..|+..++ +.
T Consensus       208 ~~~~-~g~~~~-~~---~~~~~~~~~~i~~~~~g~l~v~~~~~~~i-----------------------~~~d~~g~-~~  258 (299)
T 2z2n_A          208 RITT-SGEITE-FK---IPTPNARPHAITAGAGIDLWFTEWGANKI-----------------------GRLTSNNI-IE  258 (299)
T ss_dssp             EECT-TCCEEE-EE---CSSTTCCEEEEEECSTTCEEEEETTTTEE-----------------------EEEETTTE-EE
T ss_pred             EECC-CCcEEE-EE---CCCCCCCceeEEECCCCCEEEeccCCceE-----------------------EEECCCCc-eE
Confidence            9999 665332 21   23345678899999999987776566777                       45555443 22


Q ss_pred             E--eccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCCCc
Q 006825          562 S--FQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKT  599 (630)
Q Consensus       562 t--L~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg~  599 (630)
                      .  +.++...+.++++ ++ .++++.+ .+.|..++..+++
T Consensus       259 ~~~~~~~~~~~~~i~~-~~g~l~v~~~-~~~l~~~~~~~~~  297 (299)
T 2z2n_A          259 EYPIQIKSAEPHGICF-DGETIWFAME-CDKIGKLTLIKDN  297 (299)
T ss_dssp             EEECSSSSCCEEEEEE-CSSCEEEEET-TTEEEEEEEC---
T ss_pred             EEeCCCCCCccceEEe-cCCCEEEEec-CCcEEEEEcCccc
Confidence            2  2345577999999 87 5545444 5667777776653

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=98.99  E-value=3.8e-07  Score=92.85  Aligned_cols=237  Identities=6%  Similarity=-0.075  Sum_probs=148.2

Q ss_pred             cccEEEEECCCCcEEEEeeecCCCceeEEEEcCCCceEeeecceeeecCccceeEEEeec--ceEeecCCCccEecccCC
Q 006825          290 EQGCLIKNLDNGKEFVVNEIQEDGTWKKVKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQ--NVEEGNKDSFDLNNNGSS  367 (630)
Q Consensus       290 ~~~~~I~~LddG~~~~v~e~~~dg~~~~l~dv~TG~~lt~eef~~l~GHs~~V~~Lafs~--~laSgS~D~tvr~vWD~~  367 (630)
                      =...-+|+-+++..+++...   +.....++..+++...+       .+...+..+++.+  .+..+. +..+. +||..
T Consensus        14 ~~Egp~w~~~~~~l~~~d~~---~~~i~~~d~~~~~~~~~-------~~~~~~~~i~~~~dG~l~v~~-~~~l~-~~d~~   81 (297)
T 3g4e_A           14 CGESPVWEEVSNSLLFVDIP---AKKVCRWDSFTKQVQRV-------TMDAPVSSVALRQSGGYVATI-GTKFC-ALNWK   81 (297)
T ss_dssp             BEEEEEEETTTTEEEEEETT---TTEEEEEETTTCCEEEE-------ECSSCEEEEEEBTTSSEEEEE-TTEEE-EEETT
T ss_pred             cccCCeEECCCCEEEEEECC---CCEEEEEECCCCcEEEE-------eCCCceEEEEECCCCCEEEEE-CCeEE-EEECC
Confidence            34577888888877777543   22345678888765422       1235688999988  444444 46777 89998


Q ss_pred             CCceeEEecC---CccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCccc
Q 006825          368 GGGMKSKKKG---SWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLT  444 (630)
Q Consensus       368 tG~~~~~lk~---gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~  444 (630)
                      +|+.......   .....++.++++|+|++.++........                  .......+.|..++... .  
T Consensus        82 ~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~------------------~~~~~~~~~l~~~d~~g-~--  140 (297)
T 3g4e_A           82 EQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAP------------------AVLERHQGALYSLFPDH-H--  140 (297)
T ss_dssp             TTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBT------------------TBCCTTCEEEEEECTTS-C--
T ss_pred             CCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCccccc------------------ccccCCCcEEEEEECCC-C--
Confidence            8875443321   1234588999999998665422110000                  00001123455554431 1  


Q ss_pred             ceeeeeEecccCcCEEEEEEccCCCEE-EEEeCCCcEEEEEC--cCCceee-eeecccccCcccceEEEEECCCCCEEEE
Q 006825          445 ALYKCQEIQAHNGSIWSIKFSLDGRYL-ASAGEDCVIHVWQV--VESERKG-ELLEKQEDGHLNMLLLANGSPEPTSLSP  520 (630)
Q Consensus       445 ~~~~v~tL~gHt~~V~sVaFSpDG~~L-ASgS~DgtIrVWDl--~tg~~~~-~l~~~~~~gh~~~V~svafSpdg~~las  520 (630)
                          +..+..+....+.++|+|||+.| ++.+.++.|.+|++  .++.... ..+ ..+..+......+++.++|.++++
T Consensus       141 ----~~~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~-~~~~~~~~~p~g~~~d~~G~lwva  215 (297)
T 3g4e_A          141 ----VKKYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSV-YKLEKEEQIPDGMCIDAEGKLWVA  215 (297)
T ss_dssp             ----EEEEEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEE-EECCGGGCEEEEEEEBTTSCEEEE
T ss_pred             ----EEEEeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEE-EECCCCCCCCCeeEECCCCCEEEE
Confidence                11223344557899999999866 55567889999997  4554321 111 111233456778999999998888


Q ss_pred             eeCCCeeeeecccccccccccccCccccccEEEeC-CCCceEEeccCCCCEEEEEEc-CC-CeE-EEEECC
Q 006825          521 KHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSWS-KS-QHL-LSSSMD  587 (630)
Q Consensus       521 gs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL~GHs~~V~sLafS-Pd-~~L-aSgS~D  587 (630)
                      ....+.|                       ..|+. +|+.+..+..+...+++++|. |+ +.| ++...+
T Consensus       216 ~~~~~~v-----------------------~~~d~~tG~~~~~i~~p~~~~t~~~f~g~d~~~L~vt~~~~  263 (297)
T 3g4e_A          216 CYNGGRV-----------------------IRLDPVTGKRLQTVKLPVDKTTSCCFGGKNYSEMYVTCARD  263 (297)
T ss_dssp             EETTTEE-----------------------EEECTTTCCEEEEEECSSSBEEEEEEESGGGCEEEEEEBCT
T ss_pred             EcCCCEE-----------------------EEEcCCCceEEEEEECCCCCceEEEEeCCCCCEEEEEcCCc
Confidence            8777777                       77887 589999998888889999998 77 544 455443

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=98.98  E-value=8.1e-09  Score=111.35  Aligned_cols=131  Identities=12%  Similarity=0.055  Sum_probs=99.4

Q ss_pred             ccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeeccc
Q 006825          454 AHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRG  533 (630)
Q Consensus       454 gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~  533 (630)
                      .+.. |+.|+|  |+++|+++ .++.|++||+.+......+     ..|...+..+.+.+.  .++.+..||.+      
T Consensus        86 ~lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv~sl~~~~~~-----~~~~~~v~~i~~~~p--~~av~~~dG~L------  148 (388)
T 1xip_A           86 EIPD-VIFVCF--HGDQVLVS-TRNALYSLDLEELSEFRTV-----TSFEKPVFQLKNVNN--TLVILNSVNDL------  148 (388)
T ss_dssp             ECTT-EEEEEE--ETTEEEEE-ESSEEEEEESSSTTCEEEE-----EECSSCEEEEEECSS--EEEEEETTSEE------
T ss_pred             eCCC-eeEEEE--CCCEEEEE-cCCcEEEEEchhhhccCcc-----ceeecceeeEEecCC--CEEEEECCCCE------
Confidence            4667 999999  99999999 8899999999876644432     344556777766543  27778899999      


Q ss_pred             ccccccccccCccccccEEEeCCCCceEEeccCCCCEEEEEEcCCCeEEEEECCCcEEEEeCCCCcE--EEEE------e
Q 006825          534 RSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTC--LKIF------S  605 (630)
Q Consensus       534 ~~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL~GHs~~V~sLafSPd~~LaSgS~DgtVrIWDl~tg~~--l~t~------~  605 (630)
                                       .+|++.......   +...|.+++|||++ ++.|..||+|++|+...+++  .+++      .
T Consensus       149 -----------------~v~dl~~~~~~~---~~~~Vs~v~WSpkG-~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~  207 (388)
T 1xip_A          149 -----------------SALDLRTKSTKQ---LAQNVTSFDVTNSQ-LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELE  207 (388)
T ss_dssp             -----------------EEEETTTCCEEE---EEESEEEEEECSSE-EEEEETTSCEEEEEEETTEEEEEEEECCCHHHH
T ss_pred             -----------------EEEEccCCcccc---ccCCceEEEEcCCc-eEEEEcCCcEEEEcCCCccccccceecCCcccc
Confidence                             788884332222   45689999999987 78899999999999988886  6777      2


Q ss_pred             ----cCCceEEEE-cCCCcEEE
Q 006825          606 ----HSDYDISLV-DRLMLRFA  622 (630)
Q Consensus       606 ----H~~~V~sVa-s~~~~~lA  622 (630)
                          |...|.+|. .++..+++
T Consensus       208 ~~~~~~~~V~sI~wl~~~~flv  229 (388)
T 1xip_A          208 ELPVEEYSPLSVTILSPQDFLA  229 (388)
T ss_dssp             TSCTTTSEEEEEEESSSSEEEE
T ss_pred             cccCCCeeEEEEEEecCCeEEE
Confidence                678899999 54544443

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=98.95  E-value=4.2e-07  Score=92.56  Aligned_cols=204  Identities=8%  Similarity=-0.005  Sum_probs=132.7

Q ss_pred             eEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCC
Q 006825          351 VEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQER  430 (630)
Q Consensus       351 laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~D  430 (630)
                      +++....+++. .||..+++.. .+  .+...+.+++++++|++++..                               +
T Consensus        28 ~~~d~~~~~i~-~~d~~~~~~~-~~--~~~~~~~~i~~~~dG~l~v~~-------------------------------~   72 (297)
T 3g4e_A           28 LFVDIPAKKVC-RWDSFTKQVQ-RV--TMDAPVSSVALRQSGGYVATI-------------------------------G   72 (297)
T ss_dssp             EEEETTTTEEE-EEETTTCCEE-EE--ECSSCEEEEEEBTTSSEEEEE-------------------------------T
T ss_pred             EEEECCCCEEE-EEECCCCcEE-EE--eCCCceEEEEECCCCCEEEEE-------------------------------C
Confidence            45666678888 9999887653 22  244679999999999855421                               2


Q ss_pred             cEEEEEeCCCCcccceeeeeEec-c-cCcCEEEEEEccCCCEEEEEeC---------CCcEEEEECcCCceeeeeecccc
Q 006825          431 VRVRQYGKSCKDLTALYKCQEIQ-A-HNGSIWSIKFSLDGRYLASAGE---------DCVIHVWQVVESERKGELLEKQE  499 (630)
Q Consensus       431 g~VriWd~~~~el~~~~~v~tL~-g-Ht~~V~sVaFSpDG~~LASgS~---------DgtIrVWDl~tg~~~~~l~~~~~  499 (630)
                      ..|.+|+..++++..   +.... + ....++.++++|+|+++++...         ....+||.+........+     
T Consensus        73 ~~l~~~d~~~g~~~~---~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~-----  144 (297)
T 3g4e_A           73 TKFCALNWKEQSAVV---LATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKY-----  144 (297)
T ss_dssp             TEEEEEETTTTEEEE---EEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEE-----
T ss_pred             CeEEEEECCCCcEEE---EEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEE-----
Confidence            357888877664321   11111 1 2345899999999997776532         234566666533222222     


Q ss_pred             cCcccceEEEEECCCCCEEE-EeeCCCeeeeecccccccccccccCccccccEEEeC---CCC-----ceEEeccCCCCE
Q 006825          500 DGHLNMLLLANGSPEPTSLS-PKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL---SDK-----PICSFQGHLDDV  570 (630)
Q Consensus       500 ~gh~~~V~svafSpdg~~la-sgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl---sgk-----~l~tL~GHs~~V  570 (630)
                      ..+......++|+|+++.++ +....+.|.                       +|++   ++.     .+..+..+....
T Consensus       145 ~~~~~~pngi~~spdg~~lyv~~~~~~~i~-----------------------~~~~d~~~G~~~~~~~~~~~~~~~~~p  201 (297)
T 3g4e_A          145 FDQVDISNGLDWSLDHKIFYYIDSLSYSVD-----------------------AFDYDLQTGQISNRRSVYKLEKEEQIP  201 (297)
T ss_dssp             EEEESBEEEEEECTTSCEEEEEEGGGTEEE-----------------------EEEECTTTCCEEEEEEEEECCGGGCEE
T ss_pred             eeccccccceEEcCCCCEEEEecCCCCcEE-----------------------EEeccCCCCcccCcEEEEECCCCCCCC
Confidence            22234467899999998664 445566663                       3332   222     122333444567


Q ss_pred             EEEEEcCC-CeEEEEECCCcEEEEeCCCCcEEEEEe-cCCceEEEE-c-CCCcE
Q 006825          571 LDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYDISLV-D-RLMLR  620 (630)
Q Consensus       571 ~sLafSPd-~~LaSgS~DgtVrIWDl~tg~~l~t~~-H~~~V~sVa-s-~~~~~  620 (630)
                      ..+++.++ .++++....+.|.+||..+|+.+..+. +...+++++ . +++..
T Consensus       202 ~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~~~~t~~~f~g~d~~~  255 (297)
T 3g4e_A          202 DGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLPVDKTTSCCFGGKNYSE  255 (297)
T ss_dssp             EEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECSSSBEEEEEEESGGGCE
T ss_pred             CeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECCCCCceEEEEeCCCCCE
Confidence            89999999 777777788899999999999999998 767899999 3 55443

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=98.94  E-value=1e-06  Score=99.45  Aligned_cols=261  Identities=10%  Similarity=-0.067  Sum_probs=163.8

Q ss_pred             ECCCCcEEEEeeecCCCceeEEEEcCCCceEeeecceeeecCccceeEEEeec---ceEeecCCCccEecccCC--CCce
Q 006825          297 NLDNGKEFVVNEIQEDGTWKKVKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSS--GGGM  371 (630)
Q Consensus       297 ~LddG~~~~v~e~~~dg~~~~l~dv~TG~~lt~eef~~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~--tG~~  371 (630)
                      ..|-+..++|...  +.-...+.|..|++.+     .++.. ...+..++|+|   ++..++.|+++. +||+.  +++.
T Consensus       162 ~~d~~~~~~V~~~--~~~~V~viD~~t~~v~-----~~i~~-g~~p~~v~~SpDGr~lyv~~~dg~V~-viD~~~~t~~~  232 (567)
T 1qks_A          162 DWDLENLFSVTLR--DAGQIALIDGSTYEIK-----TVLDT-GYAVHISRLSASGRYLFVIGRDGKVN-MIDLWMKEPTT  232 (567)
T ss_dssp             CCCGGGEEEEEET--TTTEEEEEETTTCCEE-----EEEEC-SSCEEEEEECTTSCEEEEEETTSEEE-EEETTSSSCCE
T ss_pred             ccCCCceEEEEeC--CCCeEEEEECCCCeEE-----EEEeC-CCCccceEECCCCCEEEEEcCCCeEE-EEECCCCCCcE
Confidence            3444445555443  2224668899999888     33321 22456899998   677788899999 99996  8888


Q ss_pred             eEEecCCccCCEEEEEEc----CCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCccccee
Q 006825          372 KSKKKGSWFKSIRTVASS----VTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALY  447 (630)
Q Consensus       372 ~~~lk~gH~~~V~sVAfS----pdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~  447 (630)
                      +.++..|.  .-+.++|+    |||+++..                            +...+++|.++|..+.+.....
T Consensus       233 v~~i~~G~--~P~~ia~s~~~~pDGk~l~v----------------------------~n~~~~~v~ViD~~t~~~~~~i  282 (567)
T 1qks_A          233 VAEIKIGS--EARSIETSKMEGWEDKYAIA----------------------------GAYWPPQYVIMDGETLEPKKIQ  282 (567)
T ss_dssp             EEEEECCS--EEEEEEECCSTTCTTTEEEE----------------------------EEEETTEEEEEETTTCCEEEEE
T ss_pred             eEEEecCC--CCceeEEccccCCCCCEEEE----------------------------EEccCCeEEEEECCCCcEEEEE
Confidence            88877432  35789999    69998863                            3334577889998766532211


Q ss_pred             eeeEe--c---ccCc-CEEEEEEccCCC-EEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEE
Q 006825          448 KCQEI--Q---AHNG-SIWSIKFSLDGR-YLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSP  520 (630)
Q Consensus       448 ~v~tL--~---gHt~-~V~sVaFSpDG~-~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~las  520 (630)
                      .+...  .   .|.. .+..|.+++++. ++++...+|.|.++|..+........    .........+.|+|+++++++
T Consensus       283 ~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~----i~~~~~~~d~~~~pdgr~~~v  358 (567)
T 1qks_A          283 STRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTE----ISAERFLHDGGLDGSHRYFIT  358 (567)
T ss_dssp             ECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEE----EECCSSEEEEEECTTSCEEEE
T ss_pred             eccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeee----eeccccccCceECCCCCEEEE
Confidence            11110  0   1333 688899999765 55566677999999997654332211    122234667899999998877


Q ss_pred             ee-CCCeeeeecccccccccccccCccccccEEEeC-CCCceEEecc-----CCCCEEEEEEcCC-CeE-EEEE-CCCcE
Q 006825          521 KH-LDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQG-----HLDDVLDLSWSKS-QHL-LSSS-MDKTV  590 (630)
Q Consensus       521 gs-~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL~G-----Hs~~V~sLafSPd-~~L-aSgS-~DgtV  590 (630)
                      +. .+..|                       .+++. +++.+..+.-     |.+.-..+ ++|+ +.+ +++. .+++|
T Consensus       359 a~~~sn~V-----------------------~ViD~~t~kl~~~i~vgg~~Phpg~g~~~-~~p~~g~v~~t~~~g~~~V  414 (567)
T 1qks_A          359 AANARNKL-----------------------VVIDTKEGKLVAIEDTGGQTPHPGRGANF-VHPTFGPVWATSHMGDDSV  414 (567)
T ss_dssp             EEGGGTEE-----------------------EEEETTTTEEEEEEECSSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEE
T ss_pred             EeCCCCeE-----------------------EEEECCCCcEEEEEeccCcCCCCccceee-ECCCCCcEEEeCCCCCCeE
Confidence            65 45666                       56666 5555554432     43222222 5787 444 4554 47899


Q ss_pred             EEEeCCC-------CcEEEEEe-cCCceEEEE-cCCCcEEEEe
Q 006825          591 RLWHLSS-------KTCLKIFS-HSDYDISLV-DRLMLRFAYG  624 (630)
Q Consensus       591 rIWDl~t-------g~~l~t~~-H~~~V~sVa-s~~~~~lAsg  624 (630)
                      .++|+.+       .+.++++. ....-.-|. +|++..+-.+
T Consensus       415 svid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~  457 (567)
T 1qks_A          415 ALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVD  457 (567)
T ss_dssp             EEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEE
T ss_pred             EEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEe
Confidence            9999988       67888887 322222344 6666555544

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=98.93  E-value=1e-07  Score=109.33  Aligned_cols=245  Identities=10%  Similarity=-0.029  Sum_probs=147.2

Q ss_pred             eeecCCCCcccCCCccccccCCCCCcccccccEEEEECCCCcEEEEeeecCCCceeEEEEcCCCceEeeecceeeecCcc
Q 006825          261 MSINGNGNYIGNSGEVVEDFDGNGTAGVAEQGCLIKNLDNGKEFVVNEIQEDGTWKKVKEVGTGRQLTIEEFEMCVGHSP  340 (630)
Q Consensus       261 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~LddG~~~~v~e~~~dg~~~~l~dv~TG~~lt~eef~~l~GHs~  340 (630)
                      +++||||++|+...+         ..+.+...++|++|++|+.......+.. .....|-  .|+.|             
T Consensus       134 ~~~SpDg~~lAy~~~---------~~G~~~~~i~v~dl~tg~~~~~~~~~~k-~~~~~Ws--Dg~~l-------------  188 (693)
T 3iuj_A          134 LSFSRDGRILAYSLS---------LAGSDWREIHLMDVESKQPLETPLKDVK-FSGISWL--GNEGF-------------  188 (693)
T ss_dssp             EEECTTSSEEEEEEE---------CSSCCEEEEEEEETTTCSEEEEEEEEEE-SCCCEEE--TTTEE-------------
T ss_pred             EEECCCCCEEEEEEe---------cCCCceEEEEEEECCCCCCCccccCCce-eccEEEe--CCCEE-------------
Confidence            689999999965553         3446667899999999875432111000 0112344  34444             


Q ss_pred             ceeEEEeecceEeecCC-------------CccEecccCCCCce--eEEecC-C-ccCCEEEEEEcCCCCeEEeecCCCC
Q 006825          341 IVQELMRRQNVEEGNKD-------------SFDLNNNGSSGGGM--KSKKKG-S-WFKSIRTVASSVTGHKERRSSDERD  403 (630)
Q Consensus       341 ~V~~Lafs~~laSgS~D-------------~tvr~vWD~~tG~~--~~~lk~-g-H~~~V~sVAfSpdG~~lasgS~D~d  403 (630)
                                 +-++.|             ..|. +|++.++..  ...+.. . |...+.++++||||++|+-.+.   
T Consensus       189 -----------~y~~~~~~~~~~~~~~~~~~~v~-~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~---  253 (693)
T 3iuj_A          189 -----------FYSSYDKPDGSELSARTDQHKVY-FHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAA---  253 (693)
T ss_dssp             -----------EEEESSCCC-------CCCCEEE-EEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEE---
T ss_pred             -----------EEEEecCcccccccccCCCcEEE-EEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEc---
Confidence                       222222             3467 888887653  222221 3 5566889999999998753211   


Q ss_pred             CccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCE-EEEEeCC---Cc
Q 006825          404 TSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRY-LASAGED---CV  479 (630)
Q Consensus       404 t~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~-LASgS~D---gt  479 (630)
                                            .+.....|++|++..++.    ....|..+...+... |+++|.. ++....|   +.
T Consensus       254 ----------------------~~~~~~~i~~~d~~~~~~----~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~  306 (693)
T 3iuj_A          254 ----------------------NSTSGNRLYVKDLSQENA----PLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRR  306 (693)
T ss_dssp             ----------------------SSSSCCEEEEEETTSTTC----CCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCE
T ss_pred             ----------------------cCCCCcEEEEEECCCCCC----ceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCE
Confidence                                  112235799999876532    234566777777666 6666654 4454444   57


Q ss_pred             EEEEECcCCce--eeeeecccccCcccceEEEEECCCCCEEEEeeC-CCeeeeecccccccccccccCccccccEEEeCC
Q 006825          480 IHVWQVVESER--KGELLEKQEDGHLNMLLLANGSPEPTSLSPKHL-DNHLEKKRRGRSINRKSLSLDHMVVPETVFALS  556 (630)
Q Consensus       480 IrVWDl~tg~~--~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~-Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdls  556 (630)
                      |.+|++.++..  ...+     ..|...+.  .|++++..|+.... ++.-.+                     .+|++.
T Consensus       307 l~~~d~~~~~~~~~~~l-----~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l---------------------~~~d~~  358 (693)
T 3iuj_A          307 LVTVDAANPGPAHWRDL-----IPERQQVL--TVHSGSGYLFAEYMVDATARV---------------------EQFDYE  358 (693)
T ss_dssp             EEEEETTSCCGGGCEEE-----ECCCSSCE--EEEEETTEEEEEEEETTEEEE---------------------EEECTT
T ss_pred             EEEEeCCCCCccccEEE-----ecCCCCEE--EEEEECCEEEEEEEECCeeEE---------------------EEEECC
Confidence            99999987654  2333     23333343  78888887776544 332111                     667776


Q ss_pred             CCceEEec-cCCCCEEEEEEcCC-CeEEEEECC----CcEEEEeCCCCcE
Q 006825          557 DKPICSFQ-GHLDDVLDLSWSKS-QHLLSSSMD----KTVRLWHLSSKTC  600 (630)
Q Consensus       557 gk~l~tL~-GHs~~V~sLafSPd-~~LaSgS~D----gtVrIWDl~tg~~  600 (630)
                      +.....+. .+...|..+.++++ ..|+....+    ++|.+||+.+++.
T Consensus       359 g~~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~  408 (693)
T 3iuj_A          359 GKRVREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAI  408 (693)
T ss_dssp             SCEEEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCE
T ss_pred             CCeeEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeE
Confidence            66666654 34456778888887 544433333    8999999988764

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=98.93  E-value=1.3e-08  Score=109.63  Aligned_cols=166  Identities=10%  Similarity=-0.015  Sum_probs=119.4

Q ss_pred             ceeEEEeec---ceEeecCCCccEecccCCCCc----------eeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccc
Q 006825          341 IVQELMRRQ---NVEEGNKDSFDLNNNGSSGGG----------MKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSE  407 (630)
Q Consensus       341 ~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~----------~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~  407 (630)
                      .+..|++++   .+++|+.+ .++ +|+.....          ...... .+.+ |..|+|  ||++|+.          
T Consensus        39 ~~nlLais~~~gll~a~~~~-~l~-v~~~~~l~~~~~~~~~~~~~~~~~-~lp~-V~~l~f--d~~~L~v----------  102 (388)
T 1xip_A           39 SLQNLDISNSKSLFVAASGS-KAV-VGELQLLRDHITSDSTPLTFKWEK-EIPD-VIFVCF--HGDQVLV----------  102 (388)
T ss_dssp             CCBCEEEETTTTEEEEEETT-EEE-EEEHHHHHHHHHSSSCCCCCSEEE-ECTT-EEEEEE--ETTEEEE----------
T ss_pred             cccEEEEcCCCCEEEEeCCC-EEE-EEEhhHhhhhhccccccccceEEe-eCCC-eeEEEE--CCCEEEE----------
Confidence            578899998   68888887 455 68754333          111122 3555 888888  7776642          


Q ss_pred             cCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcC
Q 006825          408 KGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVE  487 (630)
Q Consensus       408 ~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~t  487 (630)
                                         + .++.|++||+....     ....+..|...|.++.+.+..  +|.+..||+|.+||+.+
T Consensus       103 -------------------~-~~~~l~v~dv~sl~-----~~~~~~~~~~~v~~i~~~~p~--~av~~~dG~L~v~dl~~  155 (388)
T 1xip_A          103 -------------------S-TRNALYSLDLEELS-----EFRTVTSFEKPVFQLKNVNNT--LVILNSVNDLSALDLRT  155 (388)
T ss_dssp             -------------------E-ESSEEEEEESSSTT-----CEEEEEECSSCEEEEEECSSE--EEEEETTSEEEEEETTT
T ss_pred             -------------------E-cCCcEEEEEchhhh-----ccCccceeecceeeEEecCCC--EEEEECCCCEEEEEccC
Confidence                               3 56789999986543     233456788889998887653  88899999999999987


Q ss_pred             CceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeCCCCc---eEEe-
Q 006825          488 SERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKP---ICSF-  563 (630)
Q Consensus       488 g~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~---l~tL-  563 (630)
                      +....         +...|.+++|+|+|  ++.+..|+++                       .+|+..+..   .+++ 
T Consensus       156 ~~~~~---------~~~~Vs~v~WSpkG--~~vg~~dg~i-----------------------~~~~~~~~~~~~k~~I~  201 (388)
T 1xip_A          156 KSTKQ---------LAQNVTSFDVTNSQ--LAVLLKDRSF-----------------------QSFAWRNGEMEKQFEFS  201 (388)
T ss_dssp             CCEEE---------EEESEEEEEECSSE--EEEEETTSCE-----------------------EEEEEETTEEEEEEEEC
T ss_pred             Ccccc---------ccCCceEEEEcCCc--eEEEEcCCcE-----------------------EEEcCCCccccccceec
Confidence            76532         33579999999999  5678899999                       566554444   3444 


Q ss_pred             -----c---cCCCCEEEEEEcCC-CeEEE
Q 006825          564 -----Q---GHLDDVLDLSWSKS-QHLLS  583 (630)
Q Consensus       564 -----~---GHs~~V~sLafSPd-~~LaS  583 (630)
                           .   +|...|.+|.|.++ .+|++
T Consensus       202 ~Pp~~~~~~~~~~~V~sI~wl~~~~flv~  230 (388)
T 1xip_A          202 LPSELEELPVEEYSPLSVTILSPQDFLAV  230 (388)
T ss_dssp             CCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred             CCcccccccCCCeeEEEEEEecCCeEEEE
Confidence                 2   47888999999998 66665

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=98.92  E-value=3.4e-07  Score=98.67  Aligned_cols=228  Identities=9%  Similarity=-0.022  Sum_probs=142.1

Q ss_pred             cceeEEEeec---ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEE
Q 006825          340 PIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSA  416 (630)
Q Consensus       340 ~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa  416 (630)
                      .....|++.+   ..++...+..|+ +||..++....... .. .... ++|+++|+++..+..+               
T Consensus       131 ~~P~~la~d~~g~lyv~d~~~~~I~-~id~~~g~~~~~~~-~~-~~~~-ia~~~~g~~l~~~d~~---------------  191 (409)
T 3hrp_A          131 KYMWGIAAVGNNTVLAYQRDDPRVR-LISVDDNKVTTVHP-GF-KGGK-PAVTKDKQRVYSIGWE---------------  191 (409)
T ss_dssp             CCEEEEEECSTTEEEEEETTTTEEE-EEETTTTEEEEEEE-TC-CBCB-CEECTTSSEEEEEBSS---------------
T ss_pred             CCceEEEEeCCCCEEEEecCCCcEE-EEECCCCEEEEeec-cC-CCCc-eeEecCCCcEEEEecC---------------
Confidence            3567788877   456666778899 99998887766555 32 2223 8899988766432211               


Q ss_pred             eecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecc-cCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeee
Q 006825          417 TDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQA-HNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELL  495 (630)
Q Consensus       417 ~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~g-Ht~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~  495 (630)
                                  ....|++|+......  ...+..+.. +...+.+++|+|++..|+.+..++.|+.||..++... .+.
T Consensus       192 ------------~~~~I~~~d~~~~~~--~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~-~~~  256 (409)
T 3hrp_A          192 ------------GTHTVYVYMKASGWA--PTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVT-LIK  256 (409)
T ss_dssp             ------------TTCEEEEEEGGGTTC--EEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEE-EEE
T ss_pred             ------------CCceEEEEEcCCCce--eEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEE-EEe
Confidence                        111678887654321  011111222 4567889999994444444777889999999876532 110


Q ss_pred             cccccCcccce-E-EEEECCC-CCEEEEeeCCCeeeeecccccccccccccCccccccEEEeCCCCceEEeccCC-----
Q 006825          496 EKQEDGHLNML-L-LANGSPE-PTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHL-----  567 (630)
Q Consensus       496 ~~~~~gh~~~V-~-svafSpd-g~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL~GHs-----  567 (630)
                      .....++.... . .++|+|+ +.++++....+.|                       ..|+..++ +..+.|+.     
T Consensus       257 ~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I-----------------------~~~~~~g~-~~~~~g~~~~~g~  312 (409)
T 3hrp_A          257 QLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSV-----------------------YKITPDGE-CEWFCGSATQKTV  312 (409)
T ss_dssp             ECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEE-----------------------EEECTTCC-EEEEEECTTCCSC
T ss_pred             cccccCCCCCCccccEEEeCCCCEEEEEeCCCCEE-----------------------EEEecCCC-EEEEEeCCCCCCc
Confidence            00012222222 3 8999995 6777776667777                       44444443 33333332     


Q ss_pred             ----------CCEEEEEEcCC-CeEEEEE-CCCcEEEEeCCCCcEEEEEec---------------CCceEEEE-cCCCc
Q 006825          568 ----------DDVLDLSWSKS-QHLLSSS-MDKTVRLWHLSSKTCLKIFSH---------------SDYDISLV-DRLML  619 (630)
Q Consensus       568 ----------~~V~sLafSPd-~~LaSgS-~DgtVrIWDl~tg~~l~t~~H---------------~~~V~sVa-s~~~~  619 (630)
                                .....++|+|+ .++++-+ .++.|+.|++.+++......+               -.....|+ ++++.
T Consensus       313 ~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~  392 (409)
T 3hrp_A          313 QDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGG  392 (409)
T ss_dssp             BCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSE
T ss_pred             CCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCC
Confidence                      35789999999 7777888 899999999888875443334               24678888 77766


Q ss_pred             EEEEec
Q 006825          620 RFAYGA  625 (630)
Q Consensus       620 ~lAsgs  625 (630)
                      +++++.
T Consensus       393 lyVad~  398 (409)
T 3hrp_A          393 YWIAEA  398 (409)
T ss_dssp             EEEEES
T ss_pred             EEEEEC
Confidence            666554

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=98.89  E-value=3e-06  Score=90.25  Aligned_cols=265  Identities=6%  Similarity=-0.119  Sum_probs=147.2

Q ss_pred             eeEEEEcCCCceEeeecceeee-cCccceeEEEeec---ceEeec----------CCCccEecccCCCCceeEEecCC--
Q 006825          315 WKKVKEVGTGRQLTIEEFEMCV-GHSPIVQELMRRQ---NVEEGN----------KDSFDLNNNGSSGGGMKSKKKGS--  378 (630)
Q Consensus       315 ~~~l~dv~TG~~lt~eef~~l~-GHs~~V~~Lafs~---~laSgS----------~D~tvr~vWD~~tG~~~~~lk~g--  378 (630)
                      +..+.|..|++.+     .++. |..   ..++++|   .|..+.          .+.++. +||..+++.+.++..+  
T Consensus        48 ~v~v~D~~t~~~~-----~~i~~g~~---p~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~-viD~~t~~~~~~i~~~~~  118 (373)
T 2mad_H           48 QQWVLDAGSGSIL-----GHVNGGFL---PNPVAAHSGSEFALASTSFSRIAKGKRTDYVE-VFDPVTFLPIADIELPDA  118 (373)
T ss_pred             EEEEEECCCCeEE-----EEecCCCC---CCeEECCCCCEEEEEeccccccccCCCCCeEE-EEECCCCcEEEEEECCCc
Confidence            4567777777766     3332 322   2888888   333332          467788 9999998887766432  


Q ss_pred             ----ccCCEEEEEEcCCCCeEEeecCC-CCCcc-ccCCcce-E----------EEeecCCCeEEEecCCcEEEEEeCCCC
Q 006825          379 ----WFKSIRTVASSVTGHKERRSSDE-RDTSS-EKGGRRS-S----------SATDDSQDVSFHGQERVRVRQYGKSCK  441 (630)
Q Consensus       379 ----H~~~V~sVAfSpdG~~lasgS~D-~dt~s-~~gh~~~-V----------sa~~~s~d~l~Sgs~Dg~VriWd~~~~  441 (630)
                          +...-..++|+|||++|...+.. .+... .. .... +          .........+++.+.|+++.+++. ++
T Consensus       119 ~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~~~~vd~-~g  196 (373)
T 2mad_H          119 PRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDH-AG  196 (373)
T ss_pred             cccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCceEEEEeCCCceEEEEcCCCCEEEEEC-CC
Confidence                01233478999999998876542 21100 11 1111 1          111222233566678899999988 55


Q ss_pred             cccceeeeeEecccCcC-EEEEEEccCCCEEEEEeCCCcEEEEECcCCcee--eeeecccc----cC-cccceEEEEECC
Q 006825          442 DLTALYKCQEIQAHNGS-IWSIKFSLDGRYLASAGEDCVIHVWQVVESERK--GELLEKQE----DG-HLNMLLLANGSP  513 (630)
Q Consensus       442 el~~~~~v~tL~gHt~~-V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~--~~l~~~~~----~g-h~~~V~svafSp  513 (630)
                      +.........+.....+ .....|.+++..++-.+..+.|.+.|+......  ..+.....    .+ .......++++|
T Consensus       197 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~  276 (373)
T 2mad_H          197 GAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLK  276 (373)
T ss_pred             cEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECC
Confidence            42210000000011222 234567776655444457889999998754321  11100000    00 112234467888


Q ss_pred             CCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeC-CCCceEEeccCCCCEEEEEEcCC-C-eEEEEE-CCCc
Q 006825          514 EPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSWSKS-Q-HLLSSS-MDKT  589 (630)
Q Consensus       514 dg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL~GHs~~V~sLafSPd-~-~LaSgS-~Dgt  589 (630)
                      ++..+......+.-  +..        ....+.+   .+++. +++.+.++.. ......++|+|| + +|+++. .+++
T Consensus       277 d~~~lyV~~~~~~~--~~~--------~~~~~~V---~VID~~t~~vv~~i~~-g~~p~~i~~s~Dg~~~l~v~~~~~~~  342 (373)
T 2mad_H          277 SSDGIYLLTSEQSA--WKL--------HAAAKEV---TSVTGLVGQTSSQISL-GHDVDAISVAQDGGPDLYALSAGTEV  342 (373)
T ss_pred             CCCEEEEEeccCCc--ccc--------cCCCCeE---EEEECCCCEEEEEEEC-CCCcCeEEECCCCCeEEEEEcCCCCe
Confidence            87766665432100  000        0000011   56666 6677777753 235789999999 6 677777 5999


Q ss_pred             EEEEeCCCCcEEEEE
Q 006825          590 VRLWHLSSKTCLKIF  604 (630)
Q Consensus       590 VrIWDl~tg~~l~t~  604 (630)
                      |.+||+.+++.++++
T Consensus       343 V~ViD~~t~~vv~~i  357 (373)
T 2mad_H          343 LHIYDAGAGDQDQST  357 (373)
T ss_pred             EEEEECCCCCEEeee
Confidence            999999999999884

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=98.86  E-value=5.2e-07  Score=101.80  Aligned_cols=193  Identities=10%  Similarity=-0.038  Sum_probs=133.7

Q ss_pred             eEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCC
Q 006825          351 VEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQER  430 (630)
Q Consensus       351 laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~D  430 (630)
                      +++...++++. ++|..+++.+.++..|.  .+..++|+|||+++.                             .++.+
T Consensus       170 ~V~~~~~~~V~-viD~~t~~v~~~i~~g~--~p~~v~~SpDGr~ly-----------------------------v~~~d  217 (567)
T 1qks_A          170 SVTLRDAGQIA-LIDGSTYEIKTVLDTGY--AVHISRLSASGRYLF-----------------------------VIGRD  217 (567)
T ss_dssp             EEEETTTTEEE-EEETTTCCEEEEEECSS--CEEEEEECTTSCEEE-----------------------------EEETT
T ss_pred             EEEeCCCCeEE-EEECCCCeEEEEEeCCC--CccceEECCCCCEEE-----------------------------EEcCC
Confidence            67778889999 99999999998887443  466899999999774                             33457


Q ss_pred             cEEEEEeCC--CCcccceeeeeEecccCcCEEEEEEc----cCCCEEEEEeCC-CcEEEEECcCCceeeeeecccc--c-
Q 006825          431 VRVRQYGKS--CKDLTALYKCQEIQAHNGSIWSIKFS----LDGRYLASAGED-CVIHVWQVVESERKGELLEKQE--D-  500 (630)
Q Consensus       431 g~VriWd~~--~~el~~~~~v~tL~gHt~~V~sVaFS----pDG~~LASgS~D-gtIrVWDl~tg~~~~~l~~~~~--~-  500 (630)
                      +.|.+||+.  +.+     .+.++..... ...|+|+    |||++|+++.+. ++|.|+|..+.+.+..+.....  . 
T Consensus       218 g~V~viD~~~~t~~-----~v~~i~~G~~-P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~  291 (567)
T 1qks_A          218 GKVNMIDLWMKEPT-----TVAEIKIGSE-ARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDE  291 (567)
T ss_dssp             SEEEEEETTSSSCC-----EEEEEECCSE-EEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTT
T ss_pred             CeEEEEECCCCCCc-----EeEEEecCCC-CceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEecccccccc
Confidence            789999985  433     3445554333 5789999    699988887654 8999999999888877542211  1 


Q ss_pred             --Ccc-cceEEEEECCCCCEEEE-eeCCCeeeeecccccccccccccCccccccEEEeCCC-C--ceEEeccCCCCEEEE
Q 006825          501 --GHL-NMLLLANGSPEPTSLSP-KHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSD-K--PICSFQGHLDDVLDL  573 (630)
Q Consensus       501 --gh~-~~V~svafSpdg~~las-gs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsg-k--~l~tL~GHs~~V~sL  573 (630)
                        .|. ..+..+.+++++..++. ....+.|                       .+++... +  .+..+ .......++
T Consensus       292 ~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v-----------------------~~vd~~~~~~~~v~~i-~~~~~~~d~  347 (567)
T 1qks_A          292 QEYHPEPRVAAILASHYRPEFIVNVKETGKI-----------------------LLVDYTDLNNLKTTEI-SAERFLHDG  347 (567)
T ss_dssp             CCEESCCCEEEEEECSSSSEEEEEETTTTEE-----------------------EEEETTCSSEEEEEEE-ECCSSEEEE
T ss_pred             ccccCCCceEEEEEcCCCCEEEEEecCCCeE-----------------------EEEecCCCccceeeee-eccccccCc
Confidence              122 25677888887655444 3444666                       3444321 1  11222 234456789


Q ss_pred             EEcCC-CeEEEEE-CCCcEEEEeCCCCcEEEEEe
Q 006825          574 SWSKS-QHLLSSS-MDKTVRLWHLSSKTCLKIFS  605 (630)
Q Consensus       574 afSPd-~~LaSgS-~DgtVrIWDl~tg~~l~t~~  605 (630)
                      .|+|+ ++|+.+. .+++|.+||+.+++.+..+.
T Consensus       348 ~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~  381 (567)
T 1qks_A          348 GLDGSHRYFITAANARNKLVVIDTKEGKLVAIED  381 (567)
T ss_dssp             EECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEE
T ss_pred             eECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEe
Confidence            99999 7776555 68999999999998876653

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=98.82  E-value=2.4e-07  Score=96.55  Aligned_cols=224  Identities=7%  Similarity=-0.093  Sum_probs=135.7

Q ss_pred             cCccceeEEEeec---ceEeecC-----CCccEecccCCCCceeEEecC-----CccCCEEEEEEcCCCCeEEeecCCCC
Q 006825          337 GHSPIVQELMRRQ---NVEEGNK-----DSFDLNNNGSSGGGMKSKKKG-----SWFKSIRTVASSVTGHKERRSSDERD  403 (630)
Q Consensus       337 GHs~~V~~Lafs~---~laSgS~-----D~tvr~vWD~~tG~~~~~lk~-----gH~~~V~sVAfSpdG~~lasgS~D~d  403 (630)
                      +|...+..|++.+   ..+.-+.     +..+. +||..+|+.++++..     .+...+..+++++++.++        
T Consensus        64 ~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~-~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~--------  134 (343)
T 2qe8_A           64 ITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLV-AWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFV--------  134 (343)
T ss_dssp             CCCSCEEEEEECSSSEEEEEECHHHHTSCCEEE-EEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEE--------
T ss_pred             cceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEE-EEECCCCeEEEEEECChhhcccccccceEEEecCCCEE--------
Confidence            5667899999987   2232222     56788 899999987776652     123456778888754322        


Q ss_pred             CccccCCcceEEEeecCCCeEEEec---CCcEEEEEeCCCCcccceeeeeEecccCcCEE-EEEEccCCCEEEEEeCCCc
Q 006825          404 TSSEKGGRRSSSATDDSQDVSFHGQ---ERVRVRQYGKSCKDLTALYKCQEIQAHNGSIW-SIKFSLDGRYLASAGEDCV  479 (630)
Q Consensus       404 t~s~~gh~~~Vsa~~~s~d~l~Sgs---~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~-sVaFSpDG~~LASgS~Dgt  479 (630)
                                          +++-.   .+..|.+||..+++.     .+.+.+|..... ...|.++|..|.+.+.|++
T Consensus       135 --------------------yvtd~~~~~~~~i~v~d~~~g~~-----~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~  189 (343)
T 2qe8_A          135 --------------------YISDPAPDDKAALIRVDLQTGLA-----ARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGT  189 (343)
T ss_dssp             --------------------EEEECCSGGGCEEEEEETTTCCE-----EEECTTCTTTSCCSCCCEETTEECBEECTTSC
T ss_pred             --------------------EEEcCccCCCCeEEEEECCCCCE-----EEEecCCCcccccccceeECCEEEEeccCCCc
Confidence                                12222   466899999876642     344555533211 1455668888888889998


Q ss_pred             EEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCC-eeeeecccccccccccccCccccccEEEeCCCC
Q 006825          480 IHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDN-HLEKKRRGRSINRKSLSLDHMVVPETVFALSDK  558 (630)
Q Consensus       480 IrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg-~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk  558 (630)
                      ++.|..                   .+..++++|+++.|+.+...+ .+  |........     +..+....++    .
T Consensus       190 ~~~~~~-------------------~~~gia~s~dg~~ly~~~~~~~~l--~~~~~~~~~-----~~~~~~~~~~----~  239 (343)
T 2qe8_A          190 VIRPHL-------------------GVNGIVLDAENEWLYLSPMHSTSM--YRIKSADLS-----NLQLTDAELG----S  239 (343)
T ss_dssp             EECCCC-------------------CEEEEEECTTSCEEEEEESSCSEE--EEEEHHHHT-----CTTCCHHHHH----T
T ss_pred             eeceec-------------------ccceeEeccCCCEEEEEeCCCCeE--EEEEHHHhc-----CCCCChhhhh----c
Confidence            877641                   245689999998887776554 33  111100000     0000000000    0


Q ss_pred             ceEEeccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCCCcEEEEEe--cCCceEEEE-cCCCcEEEEec
Q 006825          559 PICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS--HSDYDISLV-DRLMLRFAYGA  625 (630)
Q Consensus       559 ~l~tL~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg~~l~t~~--H~~~V~sVa-s~~~~~lAsgs  625 (630)
                      .+ ...++......+++.++ .++++...++.|.+||..+|+......  +...+++++ .+.+..+++..
T Consensus       240 ~~-~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~l~v~~~  309 (343)
T 2qe8_A          240 KI-ERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDGYLYFDCN  309 (343)
T ss_dssp             TC-EEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTSCEEEEEC
T ss_pred             ce-EecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCCCcEEEEeC
Confidence            01 12244445677999999 888888889999999986776544443  356788999 66676666654

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=98.81  E-value=4e-07  Score=94.41  Aligned_cols=207  Identities=10%  Similarity=-0.086  Sum_probs=132.9

Q ss_pred             cCCCccEecccCCCCceeEEecC-----CccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecC
Q 006825          355 NKDSFDLNNNGSSGGGMKSKKKG-----SWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQE  429 (630)
Q Consensus       355 S~D~tvr~vWD~~tG~~~~~lk~-----gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~  429 (630)
                      +.++++. ++|.+|++....+..     ........+++.. ++                             ..++...
T Consensus        14 ~~~~~l~-~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~~-~~-----------------------------lyv~~~~   62 (328)
T 3dsm_A           14 YSNATLS-YYDPATCEVENEVFYRANGFKLGDVAQSMVIRD-GI-----------------------------GWIVVNN   62 (328)
T ss_dssp             SCCBEEE-EEETTTTEEECSHHHHHHSSCCBSCEEEEEEET-TE-----------------------------EEEEEGG
T ss_pred             CCCceEE-EEECCCCEEhhhhHhhhcCcccCccceEEEEEC-CE-----------------------------EEEEEcC
Confidence            4578898 999999986654320     1112344455422 11                             1234445


Q ss_pred             CcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEE
Q 006825          430 RVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLA  509 (630)
Q Consensus       430 Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~sv  509 (630)
                      +++|.+||..+.+.     +.++. .......|+|+++++++++...++.|.+||+.+++....+......+.......+
T Consensus        63 ~~~v~viD~~t~~~-----~~~i~-~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i  136 (328)
T 3dsm_A           63 SHVIFAIDINTFKE-----VGRIT-GFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQM  136 (328)
T ss_dssp             GTEEEEEETTTCCE-----EEEEE-CCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCE
T ss_pred             CCEEEEEECcccEE-----EEEcC-CCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceE
Confidence            68899999987753     34453 3467899999999976666658999999999998876664321111111133345


Q ss_pred             EECCCCCEEEEee-CCCeeeeecccccccccccccCccccccEEEeC-CCCceEEeccCCCCEEEEEEcCC-CeEEEEEC
Q 006825          510 NGSPEPTSLSPKH-LDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSWSKS-QHLLSSSM  586 (630)
Q Consensus       510 afSpdg~~lasgs-~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL~GHs~~V~sLafSPd-~~LaSgS~  586 (630)
                      ++ .+++++++.. .++.|                       .++++ +++.+.++... .....++++|+ ++++++..
T Consensus       137 ~~-~~~~lyv~~~~~~~~v-----------------------~viD~~t~~~~~~i~~g-~~p~~i~~~~dG~l~v~~~~  191 (328)
T 3dsm_A          137 VQ-YGKYVYVNCWSYQNRI-----------------------LKIDTETDKVVDELTIG-IQPTSLVMDKYNKMWTITDG  191 (328)
T ss_dssp             EE-ETTEEEEEECTTCCEE-----------------------EEEETTTTEEEEEEECS-SCBCCCEECTTSEEEEEBCC
T ss_pred             EE-ECCEEEEEcCCCCCEE-----------------------EEEECCCCeEEEEEEcC-CCccceEEcCCCCEEEEECC
Confidence            55 3455555543 36677                       67776 56666666532 34578899998 65555555


Q ss_pred             C----------CcEEEEeCCCCcEEEEEe--cCCceEEEE-cCCCcEEEE
Q 006825          587 D----------KTVRLWHLSSKTCLKIFS--HSDYDISLV-DRLMLRFAY  623 (630)
Q Consensus       587 D----------gtVrIWDl~tg~~l~t~~--H~~~V~sVa-s~~~~~lAs  623 (630)
                      +          +.|.+||..+++.+.++.  ....+..++ ++++..+..
T Consensus       192 ~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv  241 (328)
T 3dsm_A          192 GYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYW  241 (328)
T ss_dssp             BCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEE
T ss_pred             CccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEE
Confidence            4          799999999999888886  245788888 766555443

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=98.81  E-value=3.5e-06  Score=87.19  Aligned_cols=227  Identities=9%  Similarity=-0.028  Sum_probs=138.1

Q ss_pred             EEEEECCCCcEEEEeeecCCCceeEEEEcCCCceEeeecceeeecCccceeEEEeec--ceEeecCCCccEecccCCCCc
Q 006825          293 CLIKNLDNGKEFVVNEIQEDGTWKKVKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQ--NVEEGNKDSFDLNNNGSSGGG  370 (630)
Q Consensus       293 ~~I~~LddG~~~~v~e~~~dg~~~~l~dv~TG~~lt~eef~~l~GHs~~V~~Lafs~--~laSgS~D~tvr~vWD~~tG~  370 (630)
                      .-.|+.+++..+++...+  + ....++..+|+...+       .+...|..+++.+  .+..++.+ .+. +||..+|+
T Consensus        53 gp~~~~~~~~l~~~d~~~--~-~i~~~d~~~~~~~~~-------~~~~~v~~i~~~~dg~l~v~~~~-gl~-~~d~~~g~  120 (326)
T 2ghs_A           53 GPTFDPASGTAWWFNILE--R-ELHELHLASGRKTVH-------ALPFMGSALAKISDSKQLIASDD-GLF-LRDTATGV  120 (326)
T ss_dssp             EEEEETTTTEEEEEEGGG--T-EEEEEETTTTEEEEE-------ECSSCEEEEEEEETTEEEEEETT-EEE-EEETTTCC
T ss_pred             CCeEeCCCCEEEEEECCC--C-EEEEEECCCCcEEEE-------ECCCcceEEEEeCCCeEEEEECC-CEE-EEECCCCc
Confidence            456777667666665432  2 245667777654311       1124688888887  33333443 477 89998887


Q ss_pred             eeEEecC--C-ccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCccccee
Q 006825          371 MKSKKKG--S-WFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALY  447 (630)
Q Consensus       371 ~~~~lk~--g-H~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~  447 (630)
                      .......  + ....++.++++|+|++.++...+.                  .     ....+.|..++  .+++    
T Consensus       121 ~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~------------------~-----~~~~~~l~~~~--~g~~----  171 (326)
T 2ghs_A          121 LTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRK------------------A-----ETGAGSIYHVA--KGKV----  171 (326)
T ss_dssp             EEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETT------------------C-----CTTCEEEEEEE--TTEE----
T ss_pred             EEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCc------------------C-----CCCceEEEEEe--CCcE----
Confidence            5433221  1 124688999999998665322110                  0     01123455555  2321    


Q ss_pred             eeeEecccCcCEEEEEEccCCCEEEE-EeCCCcEEEEECc--CC-cee--eeeecccccCcccceEEEEECCCCCEEEEe
Q 006825          448 KCQEIQAHNGSIWSIKFSLDGRYLAS-AGEDCVIHVWQVV--ES-ERK--GELLEKQEDGHLNMLLLANGSPEPTSLSPK  521 (630)
Q Consensus       448 ~v~tL~gHt~~V~sVaFSpDG~~LAS-gS~DgtIrVWDl~--tg-~~~--~~l~~~~~~gh~~~V~svafSpdg~~lasg  521 (630)
                        ..+..+......++|+|||+.|+. ...++.|.+|++.  ++ ...  ..+.  .+.........+++.++|.++++.
T Consensus       172 --~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~--~~~~~~~~p~gi~~d~~G~lwva~  247 (326)
T 2ghs_A          172 --TKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFI--DSTGIKGGMDGSVCDAEGHIWNAR  247 (326)
T ss_dssp             --EEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEE--ECTTSSSEEEEEEECTTSCEEEEE
T ss_pred             --EEeeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEE--ECCCCCCCCCeeEECCCCCEEEEE
Confidence              122233446789999999986644 4567899999986  55 321  1111  112233456789999999988877


Q ss_pred             eCCCeeeeecccccccccccccCccccccEEEeCCCCceEEeccCCCCEEEEEEc-CC-CeE-EEEECC
Q 006825          522 HLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWS-KS-QHL-LSSSMD  587 (630)
Q Consensus       522 s~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL~GHs~~V~sLafS-Pd-~~L-aSgS~D  587 (630)
                      ..++.|                       .+|+..++.+..+..+...+++++|. ++ +.| ++...+
T Consensus       248 ~~~~~v-----------------------~~~d~~g~~~~~i~~~~~~~~~~af~g~d~~~L~vt~~~~  293 (326)
T 2ghs_A          248 WGEGAV-----------------------DRYDTDGNHIARYEVPGKQTTCPAFIGPDASRLLVTSARE  293 (326)
T ss_dssp             ETTTEE-----------------------EEECTTCCEEEEEECSCSBEEEEEEESTTSCEEEEEEBCT
T ss_pred             eCCCEE-----------------------EEECCCCCEEEEEECCCCCcEEEEEecCCCCEEEEEecCC
Confidence            666667                       67777777778887777789999998 87 655 444444

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=98.78  E-value=9.3e-07  Score=88.93  Aligned_cols=180  Identities=8%  Similarity=0.014  Sum_probs=115.6

Q ss_pred             CcceEEEeecCCC-e-EEEecCCcEEEEEeCCCCcccceeeeeEecc-cCcCEEEEEEccCCCEEEEEeCC---------
Q 006825          410 GRRSSSATDDSQD-V-SFHGQERVRVRQYGKSCKDLTALYKCQEIQA-HNGSIWSIKFSLDGRYLASAGED---------  477 (630)
Q Consensus       410 h~~~Vsa~~~s~d-~-l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~g-Ht~~V~sVaFSpDG~~LASgS~D---------  477 (630)
                      +...+..+.+.++ + ++.+.....|.+|+.. +++.... .....+ +...+.+|+++++|+++++...+         
T Consensus        69 ~~~~~~~i~~~~~~g~l~v~~~~~~l~~~d~~-g~~~~~~-~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~  146 (314)
T 1pjx_A           69 YGGIPAGCQCDRDANQLFVADMRLGLLVVQTD-GTFEEIA-KKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTR  146 (314)
T ss_dssp             EECCEEEEEECSSSSEEEEEETTTEEEEEETT-SCEEECC-SBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCB
T ss_pred             CCCCCceEEEecCCCcEEEEECCCCEEEEeCC-CCEEEEE-eccCCCccccCCcCEEECCCCCEEEEecCcccccccccc
Confidence            3345677777777 5 5665555588999987 5432110 000111 22458999999999988887655         


Q ss_pred             ------CcEEEEECcCCceeeeeecccccCcccceEEEEEC----CCCCEE-EEeeCCCeeeeecccccccccccccCcc
Q 006825          478 ------CVIHVWQVVESERKGELLEKQEDGHLNMLLLANGS----PEPTSL-SPKHLDNHLEKKRRGRSINRKSLSLDHM  546 (630)
Q Consensus       478 ------gtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafS----pdg~~l-asgs~Dg~I~i~~~~~~~~~~s~s~d~~  546 (630)
                            +.|..|+.. ++.. .+     ..+......++++    |+++.+ ++...++.|.+++...            
T Consensus       147 ~~~~~~~~l~~~~~~-g~~~-~~-----~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~------------  207 (314)
T 1pjx_A          147 SMQEKFGSIYCFTTD-GQMI-QV-----DTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKG------------  207 (314)
T ss_dssp             TTSSSCEEEEEECTT-SCEE-EE-----EEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEE------------
T ss_pred             cccCCCCeEEEECCC-CCEE-Ee-----ccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCC------------
Confidence                  456667654 4332 21     1223345778899    998654 4445567774333210            


Q ss_pred             ccccEEEeCCCC-----ceEEeccCC-CCEEEEEEcCC-CeEEEEECCCcEEEEeCCCCcEEEEEe-cCCceEEEE-cCC
Q 006825          547 VVPETVFALSDK-----PICSFQGHL-DDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYDISLV-DRL  617 (630)
Q Consensus       547 i~~~~Vwdlsgk-----~l~tL~GHs-~~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg~~l~t~~-H~~~V~sVa-s~~  617 (630)
                               .++     .+..+.++. ..+..+++.++ .++++...++.|.+||..+++.+..+. +...+.+++ +++
T Consensus       208 ---------~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~d  278 (314)
T 1pjx_A          208 ---------PAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQ  278 (314)
T ss_dssp             ---------TTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTT
T ss_pred             ---------CCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEeCCCCCceeEEECCC
Confidence                     121     223344454 56788999999 777777789999999998888877777 768899999 777


Q ss_pred             Cc
Q 006825          618 ML  619 (630)
Q Consensus       618 ~~  619 (630)
                      +.
T Consensus       279 g~  280 (314)
T 1pjx_A          279 TK  280 (314)
T ss_dssp             SS
T ss_pred             CC
Confidence            76

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=98.77  E-value=1.7e-05  Score=78.53  Aligned_cols=221  Identities=8%  Similarity=-0.079  Sum_probs=137.5

Q ss_pred             ccceeEEEeec---ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCC-----CC-cc---
Q 006825          339 SPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDER-----DT-SS---  406 (630)
Q Consensus       339 s~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~-----dt-~s---  406 (630)
                      ...+..|++.+   ..++...++.+. .+|.. |+............+.++++.++|++.++.....     +. +.   
T Consensus        61 ~~~~~~i~~~~~g~l~v~~~~~~~v~-~~d~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~  138 (300)
T 2qc5_A           61 DAKVMCLIVSSLGDIWFTENGANKIG-KLSKK-GGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTADGTIYE  138 (300)
T ss_dssp             TCCEEEEEECTTSCEEEEETTTTEEE-EECTT-SCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTTSCEEE
T ss_pred             CCcceeEEECCCCCEEEEecCCCeEE-EECCC-CCeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCCCCEEE
Confidence            34567777766   344444567788 88887 6654322223457799999999999877765332     11 11   


Q ss_pred             --ccCCcceEEEeecCCCe-EE-EecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEE
Q 006825          407 --EKGGRRSSSATDDSQDV-SF-HGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHV  482 (630)
Q Consensus       407 --~~gh~~~Vsa~~~s~d~-l~-Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrV  482 (630)
                        .......+..+.+.+++ ++ +....+.|..|+. .+++.    ...+..+...+..|++.++|+++++....+.|.+
T Consensus       139 ~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~----~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~  213 (300)
T 2qc5_A          139 YDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITN-TGKLE----EYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGR  213 (300)
T ss_dssp             EECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEE----EEECSSTTCCEEEEEECTTSSEEEEETTTTEEEE
T ss_pred             ccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECC-CCcEE----EeeCCCCCCCcceEEECCCCCEEEEccCCCEEEE
Confidence              12223445666666665 44 4445788999987 44321    1223345567999999999998887777788999


Q ss_pred             EECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeCCCCceE-
Q 006825          483 WQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPIC-  561 (630)
Q Consensus       483 WDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~-  561 (630)
                      |+. ++......    ...+...+..+++.++|.++++...++.|                       ..|+.+++... 
T Consensus       214 ~~~-~g~~~~~~----~~~~~~~~~~i~~d~~g~l~v~~~~~~~i-----------------------~~~~~~g~~~~~  265 (300)
T 2qc5_A          214 ITT-TGEISEYD----IPTPNARPHAITAGKNSEIWFTEWGANQI-----------------------GRITNDNTIQEY  265 (300)
T ss_dssp             ECT-TCCEEEEE----CSSTTCCEEEEEECSTTCEEEEETTTTEE-----------------------EEECTTSCEEEE
T ss_pred             EcC-CCcEEEEE----CCCCCCCceEEEECCCCCEEEeccCCCeE-----------------------EEECCCCcEEEE
Confidence            998 44433321    12345667899999999987777666777                       44444333221 


Q ss_pred             EeccCCCCEEEEEEcCCCeEEEEECCCcEEEEeC
Q 006825          562 SFQGHLDDVLDLSWSKSQHLLSSSMDKTVRLWHL  595 (630)
Q Consensus       562 tL~GHs~~V~sLafSPd~~LaSgS~DgtVrIWDl  595 (630)
                      .+..+...+.++++.+++.|..+... .|..+|.
T Consensus       266 ~~~~~~~~~~~i~~~~~g~l~v~~~~-~i~~~~p  298 (300)
T 2qc5_A          266 QLQTENAEPHGITFGKDGSVWFALKC-KIGKLNL  298 (300)
T ss_dssp             ECCSTTCCCCCEEECTTSCEEEECSS-EEEEEEE
T ss_pred             ECCccCCccceeEeCCCCCEEEEccC-ceEEeCC
Confidence            12334456889999998434444434 6666664

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=98.75  E-value=1.7e-06  Score=88.23  Aligned_cols=216  Identities=11%  Similarity=-0.053  Sum_probs=133.3

Q ss_pred             CccceeEEEeec----ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCC-----CC-cc-
Q 006825          338 HSPIVQELMRRQ----NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDER-----DT-SS-  406 (630)
Q Consensus       338 Hs~~V~~Lafs~----~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~-----dt-~s-  406 (630)
                      +.......+|.|    .++++..++.+. .|+. +|+ ...+. .+...+..++++++|++++....+.     +. +. 
T Consensus        43 ~~~~~egp~~~~~g~~l~~~d~~~~~i~-~~~~-~g~-~~~~~-~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~g~~  118 (305)
T 3dr2_A           43 QATWSEGPAWWEAQRTLVWSDLVGRRVL-GWRE-DGT-VDVLL-DATAFTNGNAVDAQQRLVHCEHGRRAITRSDADGQA  118 (305)
T ss_dssp             CCSSEEEEEEEGGGTEEEEEETTTTEEE-EEET-TSC-EEEEE-ESCSCEEEEEECTTSCEEEEETTTTEEEEECTTSCE
T ss_pred             CCcCccCCeEeCCCCEEEEEECCCCEEE-EEeC-CCC-EEEEe-CCCCccceeeECCCCCEEEEECCCCEEEEECCCCCE
Confidence            333445555655    367777888888 8987 555 34444 4667799999999999777654432     10 11 


Q ss_pred             --c----cCC-cceEEEeecCCCe-EEE-----ecC-------------CcEEEEEeCCCCcccceeeeeEecccCcCEE
Q 006825          407 --E----KGG-RRSSSATDDSQDV-SFH-----GQE-------------RVRVRQYGKSCKDLTALYKCQEIQAHNGSIW  460 (630)
Q Consensus       407 --~----~gh-~~~Vsa~~~s~d~-l~S-----gs~-------------Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~  460 (630)
                        +    .+. ...+..+.+.+++ ++.     |..             .+.|..|+..++++.      .+. +.....
T Consensus       119 ~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~------~~~-~~~~p~  191 (305)
T 3dr2_A          119 HLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQ------RMA-DLDHPN  191 (305)
T ss_dssp             EEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCE------EEE-EESSEE
T ss_pred             EEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEE------EEe-cCCCCc
Confidence              0    000 1123345556666 444     332             356777877655432      122 345678


Q ss_pred             EEEEccCCCEEEEEeCC------CcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccc
Q 006825          461 SIKFSLDGRYLASAGED------CVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGR  534 (630)
Q Consensus       461 sVaFSpDG~~LASgS~D------gtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~  534 (630)
                      .++|+|||+.|+.+...      +.|.+|++..+. +...... ..........+++.++|.++++. .++ |       
T Consensus       192 gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~-l~~~~~~-~~~~~~~pdgi~~d~~G~lwv~~-~~g-v-------  260 (305)
T 3dr2_A          192 GLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGA-LHDRRHF-ASVPDGLPDGFCVDRGGWLWSSS-GTG-V-------  260 (305)
T ss_dssp             EEEECTTSSEEEEEECCC---CCCEEEEEEEETTE-EEEEEEE-ECCSSSCCCSEEECTTSCEEECC-SSE-E-------
T ss_pred             ceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCC-ccCCeEE-EECCCCCCCeEEECCCCCEEEec-CCc-E-------
Confidence            89999999987777665      789999987554 2110000 01112334567888899866554 333 5       


Q ss_pred             cccccccccCccccccEEEeCCCCceEEeccCCCCEEEEEEcCC-CeEEEEECCCcEEE
Q 006825          535 SINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRL  592 (630)
Q Consensus       535 ~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL~GHs~~V~sLafSPd-~~LaSgS~DgtVrI  592 (630)
                                      .+|+..++.+..+..+. .+..++|.|+ +.|..++.++..++
T Consensus       261 ----------------~~~~~~g~~~~~~~~~~-~~~~~~f~~d~~~L~it~~~~l~~~  302 (305)
T 3dr2_A          261 ----------------CVFDSDGQLLGHIPTPG-TASNCTFDQAQQRLFITGGPCLWML  302 (305)
T ss_dssp             ----------------EEECTTSCEEEEEECSS-CCCEEEECTTSCEEEEEETTEEEEE
T ss_pred             ----------------EEECCCCCEEEEEECCC-ceeEEEEeCCCCEEEEEcCCeEEEE
Confidence                            67888888888887665 5899999988 77777776654443

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=98.75  E-value=6.7e-06  Score=85.07  Aligned_cols=206  Identities=8%  Similarity=-0.092  Sum_probs=127.3

Q ss_pred             eEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCC
Q 006825          351 VEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQER  430 (630)
Q Consensus       351 laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~D  430 (630)
                      ++++..++.+. .||..+++... +.  +...|.+++++++|++++..                              .+
T Consensus        64 ~~~d~~~~~i~-~~d~~~~~~~~-~~--~~~~v~~i~~~~dg~l~v~~------------------------------~~  109 (326)
T 2ghs_A           64 WWFNILERELH-ELHLASGRKTV-HA--LPFMGSALAKISDSKQLIAS------------------------------DD  109 (326)
T ss_dssp             EEEEGGGTEEE-EEETTTTEEEE-EE--CSSCEEEEEEEETTEEEEEE------------------------------TT
T ss_pred             EEEECCCCEEE-EEECCCCcEEE-EE--CCCcceEEEEeCCCeEEEEE------------------------------CC
Confidence            45566677888 89998876543 22  23579999999998766521                              12


Q ss_pred             cEEEEEeCCCCcccceeeeeEec-cc-CcCEEEEEEccCCCEEEEEeCC----CcEEEEECcCCceeeeeecccccCccc
Q 006825          431 VRVRQYGKSCKDLTALYKCQEIQ-AH-NGSIWSIKFSLDGRYLASAGED----CVIHVWQVVESERKGELLEKQEDGHLN  504 (630)
Q Consensus       431 g~VriWd~~~~el~~~~~v~tL~-gH-t~~V~sVaFSpDG~~LASgS~D----gtIrVWDl~tg~~~~~l~~~~~~gh~~  504 (630)
                       .|.+|+..++++..+   .... ++ ...++.++++|+|+++++...+    ....||.+.+++ ...+     ..+..
T Consensus       110 -gl~~~d~~~g~~~~~---~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~~g~-~~~~-----~~~~~  179 (326)
T 2ghs_A          110 -GLFLRDTATGVLTLH---AELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGK-VTKL-----FADIS  179 (326)
T ss_dssp             -EEEEEETTTCCEEEE---ECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTE-EEEE-----EEEES
T ss_pred             -CEEEEECCCCcEEEE---eeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEeCCc-EEEe-----eCCCc
Confidence             378888776653211   1111 11 2468999999999987765422    334555544443 2222     12223


Q ss_pred             ceEEEEECCCCCEEEEe-eCCCeeeeecccccccccccccCccccccEEEeCCC-C-----ceEEeccCCCCEEEEEEcC
Q 006825          505 MLLLANGSPEPTSLSPK-HLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSD-K-----PICSFQGHLDDVLDLSWSK  577 (630)
Q Consensus       505 ~V~svafSpdg~~lasg-s~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsg-k-----~l~tL~GHs~~V~sLafSP  577 (630)
                      ....++|+|+++.++.+ ..++.|.+++...                    .++ +     .+..+.++...+..+++.+
T Consensus       180 ~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~--------------------~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~  239 (326)
T 2ghs_A          180 IPNSICFSPDGTTGYFVDTKVNRLMRVPLDA--------------------RTGLPTGKAEVFIDSTGIKGGMDGSVCDA  239 (326)
T ss_dssp             SEEEEEECTTSCEEEEEETTTCEEEEEEBCT--------------------TTCCBSSCCEEEEECTTSSSEEEEEEECT
T ss_pred             ccCCeEEcCCCCEEEEEECCCCEEEEEEccc--------------------ccCCcccCceEEEECCCCCCCCCeeEECC
Confidence            46789999999866544 4456663333210                    012 1     1222333445567899999


Q ss_pred             C-CeEEEEECCCcEEEEeCCCCcEEEEEe-cCCceEEEE-c-CCCcEE
Q 006825          578 S-QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYDISLV-D-RLMLRF  621 (630)
Q Consensus       578 d-~~LaSgS~DgtVrIWDl~tg~~l~t~~-H~~~V~sVa-s-~~~~~l  621 (630)
                      + .++++...++.|.+||. +++.+..+. +...+++++ . +++..+
T Consensus       240 ~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~~~~~~~~af~g~d~~~L  286 (326)
T 2ghs_A          240 EGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAFIGPDASRL  286 (326)
T ss_dssp             TSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEEESTTSCEE
T ss_pred             CCCEEEEEeCCCEEEEECC-CCCEEEEEECCCCCcEEEEEecCCCCEE
Confidence            8 66667667789999998 688888887 767899999 4 665443

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=98.75  E-value=1.2e-06  Score=100.43  Aligned_cols=224  Identities=11%  Similarity=0.014  Sum_probs=135.6

Q ss_pred             ecCccceeEEEeec---ceE-----eecCCCccEecccCCCCceeEEecCCccCCE--EEEEEcCCCCeEEeecCCCCCc
Q 006825          336 VGHSPIVQELMRRQ---NVE-----EGNKDSFDLNNNGSSGGGMKSKKKGSWFKSI--RTVASSVTGHKERRSSDERDTS  405 (630)
Q Consensus       336 ~GHs~~V~~Lafs~---~la-----SgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V--~sVAfSpdG~~lasgS~D~dt~  405 (630)
                      .+|...|..+.|+|   .||     .|+.+.+++ +||+.+|+.+...    ...+  .+++|+ ||+.|+.++.++.. 
T Consensus       125 ~~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~-v~dl~tg~~~~~~----~~~~k~~~~~Ws-Dg~~l~y~~~~~~~-  197 (693)
T 3iuj_A          125 PDGTTALDQLSFSRDGRILAYSLSLAGSDWREIH-LMDVESKQPLETP----LKDVKFSGISWL-GNEGFFYSSYDKPD-  197 (693)
T ss_dssp             TTSCCEEEEEEECTTSSEEEEEEECSSCCEEEEE-EEETTTCSEEEEE----EEEEESCCCEEE-TTTEEEEEESSCCC-
T ss_pred             CCCcEEEEEEEECCCCCEEEEEEecCCCceEEEE-EEECCCCCCCccc----cCCceeccEEEe-CCCEEEEEEecCcc-
Confidence            45666788889999   454     456667899 9999999865532    2223  468999 99988877655310 


Q ss_pred             cccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecc-cCcCEEEEEEccCCCEEEEEe----CCCcE
Q 006825          406 SEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQA-HNGSIWSIKFSLDGRYLASAG----EDCVI  480 (630)
Q Consensus       406 s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~g-Ht~~V~sVaFSpDG~~LASgS----~DgtI  480 (630)
                         +            ..+.......+|++|++.+..... .++..... |...+..+.|+|||++|+-..    ....|
T Consensus       198 ---~------------~~~~~~~~~~~v~~~~lgt~~~~~-~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i  261 (693)
T 3iuj_A          198 ---G------------SELSARTDQHKVYFHRLGTAQEDD-RLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRL  261 (693)
T ss_dssp             ----------------------CCCCEEEEEETTSCGGGC-EEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEE
T ss_pred             ---c------------ccccccCCCcEEEEEECCCCcccc-eEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEE
Confidence               0            001111234579999987654221 23333444 666788999999999875433    23589


Q ss_pred             EEEECcCCc-eeeeeecccccCcccceEEEEECCCCCEEEEeeC-C---CeeeeecccccccccccccCccccccEEEeC
Q 006825          481 HVWQVVESE-RKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHL-D---NHLEKKRRGRSINRKSLSLDHMVVPETVFAL  555 (630)
Q Consensus       481 rVWDl~tg~-~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~-D---g~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl  555 (630)
                      .+||+.++. ....+     ..+....... +++++..|+..+. +   ..|                       .++++
T Consensus       262 ~~~d~~~~~~~~~~l-----~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l-----------------------~~~d~  312 (693)
T 3iuj_A          262 YVKDLSQENAPLLTV-----QGDLDADVSL-VDNKGSTLYLLTNRDAPNRRL-----------------------VTVDA  312 (693)
T ss_dssp             EEEETTSTTCCCEEE-----ECSSSSCEEE-EEEETTEEEEEECTTCTTCEE-----------------------EEEET
T ss_pred             EEEECCCCCCceEEE-----eCCCCceEEE-EeccCCEEEEEECCCCCCCEE-----------------------EEEeC
Confidence            999998764 23332     2333333333 4555554444332 2   223                       45555


Q ss_pred             C-CCc--eEEeccCCCCEEEEEEcCC-CeEEEEEC-CC--cEEEEeCCCCcEEEEEe--cCCceEEEE
Q 006825          556 S-DKP--ICSFQGHLDDVLDLSWSKS-QHLLSSSM-DK--TVRLWHLSSKTCLKIFS--HSDYDISLV  614 (630)
Q Consensus       556 s-gk~--l~tL~GHs~~V~sLafSPd-~~LaSgS~-Dg--tVrIWDl~tg~~l~t~~--H~~~V~sVa  614 (630)
                      . +..  ...+..|...+.  .|+++ ++|+.... |+  .|++|++..+ .++.+.  +...|..+.
T Consensus       313 ~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~-~~~~l~~p~~~~~~~~~  377 (693)
T 3iuj_A          313 ANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYEGK-RVREVALPGLGSVSGFN  377 (693)
T ss_dssp             TSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEEEEECTTSC-EEEEECCSSSSEEEECC
T ss_pred             CCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEEEEEECCCC-eeEEeecCCCceEEeee
Confidence            3 322  356777777776  88888 77766555 44  6899998754 445554  555666665

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=98.72  E-value=5.3e-09  Score=111.07  Aligned_cols=197  Identities=12%  Similarity=0.000  Sum_probs=105.3

Q ss_pred             ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecC
Q 006825          350 NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQE  429 (630)
Q Consensus       350 ~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~  429 (630)
                      .++.++.|+++. .||..+|+.+.+++ .  ..+.+..+..+|+.                             ++.++.
T Consensus        11 ~v~~gs~dg~v~-a~d~~tG~~~W~~~-~--~~~~s~p~~~~g~~-----------------------------~v~~s~   57 (369)
T 2hz6_A           11 LLFVSTLDGSLH-AVSKRTGSIKWTLK-E--DPVLQVPTHVEEPA-----------------------------FLPDPN   57 (369)
T ss_dssp             EEEEEETTSEEE-EEETTTCCEEEEEE-C--CCSCCCC-----CC-----------------------------EEECTT
T ss_pred             EEEEEcCCCEEE-EEECCCCCEEEEec-C--CCceecceEcCCCE-----------------------------EEEeCC
Confidence            578889999999 99999999998887 3  34433333333322                             345577


Q ss_pred             CcEEEEEeCCCCcccceeeeeEecccCc-CEEE-EEEccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceE
Q 006825          430 RVRVRQYGKSCKDLTALYKCQEIQAHNG-SIWS-IKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLL  507 (630)
Q Consensus       430 Dg~VriWd~~~~el~~~~~v~tL~gHt~-~V~s-VaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~  507 (630)
                      |+.|+.||..+++.     +..+..+.. .+.+ ..+. ++..|++++.|+.|+.||..+|+.+..+     ..+.    
T Consensus        58 dg~l~a~d~~tG~~-----~w~~~~~~~~~~~~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~-----~~~~----  122 (369)
T 2hz6_A           58 DGSLYTLGSKNNEG-----LTKLPFTIPELVQASPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTL-----SSAF----  122 (369)
T ss_dssp             TCCEEEC-----CC-----SEECSCCHHHHHTTCSCC------CCCCEEEEEEEEECCC---------------------
T ss_pred             CCEEEEEECCCCce-----eeeeeccCccccccCceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEe-----cCCC----
Confidence            88999999877653     122222211 1100 0111 3456788889999999999999887664     2221    


Q ss_pred             EEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeC-CCCceEEeccCCCCEEEEEEcC----CCeEE
Q 006825          508 LANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSWSK----SQHLL  582 (630)
Q Consensus       508 svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL~GHs~~V~sLafSP----d~~La  582 (630)
                      ...++|++..++.++.++.|                       ..|+. +|+.+..+..+.  ....++.+    ++.++
T Consensus       123 ~~~~~p~~~~v~~~~~dg~v-----------------------~a~d~~tG~~~W~~~~~~--~~~~~~~~~~~~~~~v~  177 (369)
T 2hz6_A          123 ADSLSPSTSLLYLGRTEYTI-----------------------TMYDTKTRELRWNATYFD--YAASLPEDDVDYKMSHF  177 (369)
T ss_dssp             ----------EEEEEEEEEE-----------------------ECCCSSSSSCCCEEEEEE--ECCBCCCCCTTCCCCEE
T ss_pred             cccccccCCEEEEEecCCEE-----------------------EEEECCCCCEEEeEeccc--ccCccccCCccccceEE
Confidence            23456678888888888888                       44444 444444433211  11222333    25678


Q ss_pred             EEECCCcEEEEeCCCCcEEEEEecCCceEEEE--cCCCc
Q 006825          583 SSSMDKTVRLWHLSSKTCLKIFSHSDYDISLV--DRLML  619 (630)
Q Consensus       583 SgS~DgtVrIWDl~tg~~l~t~~H~~~V~sVa--s~~~~  619 (630)
                      .++.|+.|+.||..+|+.+..+....+|..+-  ..++.
T Consensus       178 ~~~~dg~v~a~d~~tG~~~W~~~~~~pv~~~~~~~~dg~  216 (369)
T 2hz6_A          178 VSNGDGLVVTVDSESGDVLWIQNYASPVVAFYVWQREGL  216 (369)
T ss_dssp             EEETSCEEEEECTTTCCEEEEEECSSCEEEEEECTTSSC
T ss_pred             EECCCCEEEEEECCCCcEEEEecCCCceEEEEEecCCce
Confidence            89999999999999999999888666665543  44554

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=98.62  E-value=1.3e-05  Score=86.28  Aligned_cols=231  Identities=9%  Similarity=0.022  Sum_probs=135.7

Q ss_pred             CCCcEEEEeeecCCCceeEEEEcCCCceEeeecceeeecCccceeEEEeec---ceEeecCCC--ccEecccCCCCceeE
Q 006825          299 DNGKEFVVNEIQEDGTWKKVKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQ---NVEEGNKDS--FDLNNNGSSGGGMKS  373 (630)
Q Consensus       299 ddG~~~~v~e~~~dg~~~~l~dv~TG~~lt~eef~~l~GHs~~V~~Lafs~---~laSgS~D~--tvr~vWD~~tG~~~~  373 (630)
                      .+|+.|++...   ....+.++..+|+..++...      ..... +++.+   .|..+..++  .+. +|+..++....
T Consensus       140 ~~g~lyv~d~~---~~~I~~id~~~g~~~~~~~~------~~~~~-ia~~~~g~~l~~~d~~~~~~I~-~~d~~~~~~~~  208 (409)
T 3hrp_A          140 GNNTVLAYQRD---DPRVRLISVDDNKVTTVHPG------FKGGK-PAVTKDKQRVYSIGWEGTHTVY-VYMKASGWAPT  208 (409)
T ss_dssp             STTEEEEEETT---TTEEEEEETTTTEEEEEEET------CCBCB-CEECTTSSEEEEEBSSTTCEEE-EEEGGGTTCEE
T ss_pred             CCCCEEEEecC---CCcEEEEECCCCEEEEeecc------CCCCc-eeEecCCCcEEEEecCCCceEE-EEEcCCCceeE
Confidence            56665555442   22345667777666533211      12223 77777   466666655  566 77776665544


Q ss_pred             Ee---cCCccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeee
Q 006825          374 KK---KGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQ  450 (630)
Q Consensus       374 ~l---k~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~  450 (630)
                      ++   ...+...+.++|++|++..|                             +....+++|+.|+..++...... ..
T Consensus       209 ~~g~~~~~~~~~p~~iav~p~~g~l-----------------------------yv~d~~~~I~~~d~~~~~~~~~~-~~  258 (409)
T 3hrp_A          209 RIGQLGSTFSGKIGAVALDETEEWL-----------------------------YFVDSNKNFGRFNVKTQEVTLIK-QL  258 (409)
T ss_dssp             EEEECCTTSCSCCCBCEECTTSSEE-----------------------------EEECTTCEEEEEETTTCCEEEEE-EC
T ss_pred             EeeeccchhcCCcEEEEEeCCCCeE-----------------------------EEEECCCcEEEEECCCCCEEEEe-cc
Confidence            44   11245566778888832222                             22334668999998766421100 00


Q ss_pred             EecccCcCE-E-EEEEcc-CCCEEEEEeCCCcEEEEECcCCceeeeeeccc-cc---------CcccceEEEEECCCCCE
Q 006825          451 EIQAHNGSI-W-SIKFSL-DGRYLASAGEDCVIHVWQVVESERKGELLEKQ-ED---------GHLNMLLLANGSPEPTS  517 (630)
Q Consensus       451 tL~gHt~~V-~-sVaFSp-DG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~-~~---------gh~~~V~svafSpdg~~  517 (630)
                      ...++...- . .|+|+| ++.++++-...+.|+.|+....  ...+.... ..         ........++++|+|.+
T Consensus       259 ~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~l  336 (409)
T 3hrp_A          259 ELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNF  336 (409)
T ss_dssp             CCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCE
T ss_pred             cccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCE
Confidence            022333333 3 999999 5777777778899999997543  22221110 00         11245778999999998


Q ss_pred             EEEee-CCCeeeeecccccccccccccCccccccEEEeCCCCceEEeccC---------------CCCEEEEEEcCC-Ce
Q 006825          518 LSPKH-LDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGH---------------LDDVLDLSWSKS-QH  580 (630)
Q Consensus       518 lasgs-~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL~GH---------------s~~V~sLafSPd-~~  580 (630)
                      +++.. .+..|                       +.|++....+.++.|+               -.....|++.++ .+
T Consensus       337 yvad~~~~~~I-----------------------~~~~~~~G~v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~l  393 (409)
T 3hrp_A          337 YIVDGFKGYCL-----------------------RKLDILDGYVSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGY  393 (409)
T ss_dssp             EEEETTTTCEE-----------------------EEEETTTTEEEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEE
T ss_pred             EEEeCCCCCEE-----------------------EEEECCCCEEEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCE
Confidence            88877 77778                       4455322234444444               245789999998 77


Q ss_pred             EEEEECCCcEEEEeC
Q 006825          581 LLSSSMDKTVRLWHL  595 (630)
Q Consensus       581 LaSgS~DgtVrIWDl  595 (630)
                      +++-...+.|+.+.+
T Consensus       394 yVad~~n~~Ir~i~~  408 (409)
T 3hrp_A          394 WIAEAWGKAIRKYAV  408 (409)
T ss_dssp             EEEESTTCEEEEEEE
T ss_pred             EEEECCCCeEEEEEe
Confidence            778888888888765

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=98.61  E-value=6.9e-06  Score=88.38  Aligned_cols=282  Identities=11%  Similarity=0.029  Sum_probs=156.3

Q ss_pred             CCCcEEEEeeec--CCCceeEEEEcCCCceEeeecceee-ecCccceeEEEeec---ceEeec----------CCCccEe
Q 006825          299 DNGKEFVVNEIQ--EDGTWKKVKEVGTGRQLTIEEFEMC-VGHSPIVQELMRRQ---NVEEGN----------KDSFDLN  362 (630)
Q Consensus       299 ddG~~~~v~e~~--~dg~~~~l~dv~TG~~lt~eef~~l-~GHs~~V~~Lafs~---~laSgS----------~D~tvr~  362 (630)
                      .+|+.++|....  .......+.|..|++.+     .++ .|..+  . ++++|   .|..++          .+.+|. 
T Consensus        42 pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~-----~~I~vG~~P--~-va~spDG~~lyVan~~~~r~~~G~~~~~Vs-  112 (386)
T 3sjl_D           42 PDARRVYVNDPAHFAAVTQQFVIDGEAGRVI-----GMIDGGFLP--N-PVVADDGSFIAHASTVFSRIARGERTDYVE-  112 (386)
T ss_dssp             CCTTEEEEEECGGGCSSEEEEEEETTTTEEE-----EEEEECSSC--E-EEECTTSSCEEEEEEEEEETTEEEEEEEEE-
T ss_pred             CCCCEEEEEcCcccCCCCEEEEEECCCCeEE-----EEEECCCCC--c-EEECCCCCEEEEEcccccccccCCCCCEEE-
Confidence            556666664442  11224667788898888     333 34444  3 99999   333332          467898 


Q ss_pred             cccCCCCceeEEecCCc------cCCEEEEEEcCCCCeEEeecCC-CCCcc--ccCCcceEEEe---------ecCCCeE
Q 006825          363 NNGSSGGGMKSKKKGSW------FKSIRTVASSVTGHKERRSSDE-RDTSS--EKGGRRSSSAT---------DDSQDVS  424 (630)
Q Consensus       363 vWD~~tG~~~~~lk~gH------~~~V~sVAfSpdG~~lasgS~D-~dt~s--~~gh~~~Vsa~---------~~s~d~l  424 (630)
                      +||..|++.+.++..+-      ...-..++|+|||+++...... .....  -......+..+         ......+
T Consensus       113 viD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~~~~~P~g~~~~  192 (386)
T 3sjl_D          113 VFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTF  192 (386)
T ss_dssp             EECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEE
T ss_pred             EEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCcceeecCCCcee
Confidence            99999999888775321      1123458999999987766532 21100  00000111111         1122235


Q ss_pred             EEecCCcEEEEEeCCC-CcccceeeeeEecccCcCEE-EEEEc-cCCCEEEEEeCCCcEEEEECcCCce--eeeeecc--
Q 006825          425 FHGQERVRVRQYGKSC-KDLTALYKCQEIQAHNGSIW-SIKFS-LDGRYLASAGEDCVIHVWQVVESER--KGELLEK--  497 (630)
Q Consensus       425 ~Sgs~Dg~VriWd~~~-~el~~~~~v~tL~gHt~~V~-sVaFS-pDG~~LASgS~DgtIrVWDl~tg~~--~~~l~~~--  497 (630)
                      ++.+.||++.+.+... +.... .....+.--...+. ...|. ++|++++ .+.+++|.+.|+.++..  ...+...  
T Consensus       193 ~~~~~DG~~~~v~~~~~g~v~~-~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~  270 (386)
T 3sjl_D          193 FMHCRDGSLAKVAFGTEGTPEI-THTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTE  270 (386)
T ss_dssp             EEEETTSCEEEEECCSSSCCEE-EECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCH
T ss_pred             EEECCCCCEEEEECCCCCeEEE-eecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecceecccc
Confidence            6778899998888865 33210 00001111112222 24664 6887655 56689999999976542  2211000  


Q ss_pred             --cccC-cccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeC-CCCceEEeccCCCCEEEE
Q 006825          498 --QEDG-HLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDL  573 (630)
Q Consensus       498 --~~~g-h~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL~GHs~~V~sL  573 (630)
                        ...+ .......+++++++..+.....++.-  +...        .....+   .++|+ +++.+.++.-- ..++.|
T Consensus       271 ~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~--~~hk--------~~~~~V---~viD~~t~kv~~~i~vg-~~~~~l  336 (386)
T 3sjl_D          271 AERADGWRPGGWQQVAYHRALDRIYLLVDQRDE--WRHK--------TASRFV---VVLDAKTGERLAKFEMG-HEIDSI  336 (386)
T ss_dssp             HHHHTTEEECSSSCEEEETTTTEEEEEEEECCT--TCTT--------SCEEEE---EEEETTTCCEEEEEEEE-EEECEE
T ss_pred             ccccccccCCCcceeeECCCCCeEEEEeccccc--cccC--------CCCCEE---EEEECCCCeEEEEEECC-CCcceE
Confidence              0001 01222346668887777665321100  0000        000001   45566 77777776522 268899


Q ss_pred             EEcCC-C-eEEEE-ECCCcEEEEeCCCCcEEEEEe
Q 006825          574 SWSKS-Q-HLLSS-SMDKTVRLWHLSSKTCLKIFS  605 (630)
Q Consensus       574 afSPd-~-~LaSg-S~DgtVrIWDl~tg~~l~t~~  605 (630)
                      +|++| + +|++. ..+++|.++|+.+++.++++.
T Consensus       337 avs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~  371 (386)
T 3sjl_D          337 NVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVN  371 (386)
T ss_dssp             EECSSSSCEEEEEETTTTEEEEEETTTCCEEEEEC
T ss_pred             EECCCCCeEEEEEcCCCCeEEEEECCCCcEEEEec
Confidence            99999 5 66665 459999999999999999997

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=98.54  E-value=6.3e-06  Score=88.09  Aligned_cols=274  Identities=7%  Similarity=-0.049  Sum_probs=158.1

Q ss_pred             CcEEEEeeecCCCc-eeEEEEcCCCceEeeecceee-ecCccceeEEEeec---ceEeec----------CCCccEeccc
Q 006825          301 GKEFVVNEIQEDGT-WKKVKEVGTGRQLTIEEFEMC-VGHSPIVQELMRRQ---NVEEGN----------KDSFDLNNNG  365 (630)
Q Consensus       301 G~~~~v~e~~~dg~-~~~l~dv~TG~~lt~eef~~l-~GHs~~V~~Lafs~---~laSgS----------~D~tvr~vWD  365 (630)
                      .+.|+.++.+.... ...+.|..|++.+     .++ .|+.+   .++|+|   .+..+.          .+.++. +||
T Consensus        32 ~~~yV~~~~~~~~~d~vsvID~~t~~v~-----~~i~vG~~P---~i~~spDg~~lyVan~~~~r~~~G~~~~~Vs-viD  102 (368)
T 1mda_H           32 RRSHITLPAYFAGTTENWVSCAGCGVTL-----GHSLGAFLS---LAVAGHSGSDFALASTSFARSAKGKRTDYVE-VFD  102 (368)
T ss_dssp             TEEEEEECTTTCSSEEEEEEETTTTEEE-----EEEEECTTC---EEEECTTSSCEEEEEEEETTTTSSSEEEEEE-EEC
T ss_pred             CeEEEECCccCCccceEEEEECCCCeEE-----EEEeCCCCC---ceEECCCCCEEEEEcccccccccCCCCCEEE-EEE
Confidence            44455555322112 4567899999988     444 56655   699998   333332          478898 999


Q ss_pred             CCCCceeEEecCC-c-----cCCEEEEEEcCCCCeEEeecCC-CCCccc--cCCcceEEEeec------CCC---eEEEe
Q 006825          366 SSGGGMKSKKKGS-W-----FKSIRTVASSVTGHKERRSSDE-RDTSSE--KGGRRSSSATDD------SQD---VSFHG  427 (630)
Q Consensus       366 ~~tG~~~~~lk~g-H-----~~~V~sVAfSpdG~~lasgS~D-~dt~s~--~gh~~~Vsa~~~------s~d---~l~Sg  427 (630)
                      ..|++.+.++..+ -     ...-..++|+|||+++...... ......  -+-.. +..+..      .++   .+++.
T Consensus       103 ~~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t-v~~i~v~~~~~~~p~g~~~~~~~  181 (368)
T 1mda_H          103 PVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD-DQLTKSASCFHIHPGAAATHYLG  181 (368)
T ss_dssp             TTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE-EEEEECSSCCCCEEEETTEEECC
T ss_pred             CCCCCEEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh-ceEEECCCceEEccCCCeEEEEE
Confidence            9999999988632 0     1223458999999988776532 111111  11111 111111      111   24556


Q ss_pred             cCCcEEEEEeCCC-----CcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCc--eeeeeeccc--
Q 006825          428 QERVRVRQYGKSC-----KDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESE--RKGELLEKQ--  498 (630)
Q Consensus       428 s~Dg~VriWd~~~-----~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~--~~~~l~~~~--  498 (630)
                      +.|+++.+.+...     ++...... ..+.--..+.   + .+++..++-.+. ++|.+.|+....  .+..+....  
T Consensus       182 ~~dg~~~~vd~~~~~~~~~~v~~~~t-~~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~  255 (368)
T 1mda_H          182 SCPASLAASDLAAAPAAAGIVGAQCT-GAQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESG  255 (368)
T ss_dssp             CCTTSCEEEECCSSCCCCEECCCCSC-TTSCBCSCCE---E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTH
T ss_pred             cCCCCEEEEECccccccCCeEEEEee-eeeeCCCCcc---c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEecccc
Confidence            6777777777765     22110000 0011122343   3 566665555666 899999986532  111110000  


Q ss_pred             --ccC-cccceEEEEECCCCCEEEEeeC-C--------CeeeeecccccccccccccCccccccEEEeC-CCCceEEecc
Q 006825          499 --EDG-HLNMLLLANGSPEPTSLSPKHL-D--------NHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQG  565 (630)
Q Consensus       499 --~~g-h~~~V~svafSpdg~~lasgs~-D--------g~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL~G  565 (630)
                        ..+ .......++++|+++.+..+.. .        ..+                       .++|+ +.+.+.++..
T Consensus       256 ~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~-----------------------~ViD~~t~~vv~~i~v  312 (368)
T 1mda_H          256 RKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENT-----------------------SSVTASVGQTSGPISN  312 (368)
T ss_dssp             HHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEE-----------------------EEEESSSCCEEECCEE
T ss_pred             ccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCE-----------------------EEEECCCCeEEEEEEC
Confidence              000 0011112679999887776533 2        223                       47777 6777777654


Q ss_pred             CCCCEEEEEEcCC-C-eEEEEE-CCCcEEEEeCCCCcEEEEEecCCceEEEE
Q 006825          566 HLDDVLDLSWSKS-Q-HLLSSS-MDKTVRLWHLSSKTCLKIFSHSDYDISLV  614 (630)
Q Consensus       566 Hs~~V~sLafSPd-~-~LaSgS-~DgtVrIWDl~tg~~l~t~~H~~~V~sVa  614 (630)
                      .. ....|+|+|| + ++++.. .+++|.++|+.+++.++++.-....+.++
T Consensus       313 g~-~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~vg~~P~~i~  363 (368)
T 1mda_H          313 GH-DSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDKGPESLS  363 (368)
T ss_dssp             EE-EECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCCSCCCEEE
T ss_pred             CC-CcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEECCCCCCEEE
Confidence            43 5789999999 5 567777 59999999999999999998444445554

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=98.49  E-value=1.2e-05  Score=87.68  Aligned_cols=256  Identities=11%  Similarity=-0.007  Sum_probs=149.9

Q ss_pred             eeEEEEcCCCceEeeecceee-ecCccceeEEEeec---ceEeec----------CCCccEecccCCCCceeEEecCC--
Q 006825          315 WKKVKEVGTGRQLTIEEFEMC-VGHSPIVQELMRRQ---NVEEGN----------KDSFDLNNNGSSGGGMKSKKKGS--  378 (630)
Q Consensus       315 ~~~l~dv~TG~~lt~eef~~l-~GHs~~V~~Lafs~---~laSgS----------~D~tvr~vWD~~tG~~~~~lk~g--  378 (630)
                      ...+.|..|++.+     .++ .|..+   .++++|   .|..+.          .+++|. ++|..+++.+.++..+  
T Consensus       100 ~VsVID~~t~~vv-----~~I~vG~~P---gia~SpDgk~lyVan~~~~~~~~G~~~~~Vs-viD~~t~~vv~~I~v~g~  170 (426)
T 3c75_H          100 QQFVIDGSTGRIL-----GMTDGGFLP---HPVAAEDGSFFAQASTVFERIARGKRTDYVE-VFDPVTFLPIADIELPDA  170 (426)
T ss_dssp             EEEEEETTTTEEE-----EEEEECSSC---EEEECTTSSCEEEEEEEEEETTEEEEEEEEE-EECTTTCCEEEEEEETTC
T ss_pred             eEEEEECCCCEEE-----EEEECCCCC---ceEECCCCCEEEEEeccccccccCCCCCEEE-EEECCCCcEEEEEECCCc
Confidence            5677888888888     333 34443   788998   333332          467888 9999999988876532  


Q ss_pred             ----ccCCEEEEEEcCCCCeEEeecCC-CCCcc--ccCCcceEEEeec---------CCCeEEEecCCcEEEEEeCCCCc
Q 006825          379 ----WFKSIRTVASSVTGHKERRSSDE-RDTSS--EKGGRRSSSATDD---------SQDVSFHGQERVRVRQYGKSCKD  442 (630)
Q Consensus       379 ----H~~~V~sVAfSpdG~~lasgS~D-~dt~s--~~gh~~~Vsa~~~---------s~d~l~Sgs~Dg~VriWd~~~~e  442 (630)
                          ....-..++|+|||+++..+... .....  -......+..+..         ....+++.+.|+++.+.+...++
T Consensus       171 ~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~  250 (426)
T 3c75_H          171 PRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDCYHIFPASPTVFYMNCRDGSLARVDFADGE  250 (426)
T ss_dssp             CCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSSEEEEECCTTC
T ss_pred             cccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCceeeccCCCcEEEEEcCCCCEEEEECCCCc
Confidence                11223458999999988776543 21000  0000011111111         12224555667777777764433


Q ss_pred             ccceeeeeEecccCcCE-EEEEEccCCCEEEEEeCCCcEEEEECcCCcee--eeeecc--cc--cC-cccceEEEEECCC
Q 006825          443 LTALYKCQEIQAHNGSI-WSIKFSLDGRYLASAGEDCVIHVWQVVESERK--GELLEK--QE--DG-HLNMLLLANGSPE  514 (630)
Q Consensus       443 l~~~~~v~tL~gHt~~V-~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~--~~l~~~--~~--~g-h~~~V~svafSpd  514 (630)
                      ...... ..+.-...++ ..+.|.+++..++.....++|.+.|+......  ..+...  ..  .+ .......++++|+
T Consensus       251 v~~~~~-~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~d  329 (426)
T 3c75_H          251 TKVTNT-EVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQ  329 (426)
T ss_dssp             CEEEEC-CCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGG
T ss_pred             EEEEee-eeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCC
Confidence            210000 0111111221 23578999888777788899999998654321  111000  00  00 0111123678898


Q ss_pred             CCEEEEeeC----------CCeeeeecccccccccccccCccccccEEEeC-CCCceEEeccCCCCEEEEEEcCC-C-eE
Q 006825          515 PTSLSPKHL----------DNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSWSKS-Q-HL  581 (630)
Q Consensus       515 g~~lasgs~----------Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL~GHs~~V~sLafSPd-~-~L  581 (630)
                      +..+.....          .+.|                       .++|. +.+.+.++.... ....|+|+|| + +|
T Consensus       330 g~rlyVa~~~~~~gthk~~s~~V-----------------------sVID~~T~kvv~~I~vg~-~P~gia~spDg~~~l  385 (426)
T 3c75_H          330 SDRIYLLVDQRDEWKHKAASRFV-----------------------VVLNAETGERINKIELGH-EIDSINVSQDAEPLL  385 (426)
T ss_dssp             GTEEEEEEEECCTTCTTSCEEEE-----------------------EEEETTTCCEEEEEEEEE-EECEEEECCSSSCEE
T ss_pred             CCEEEEEecccccccccCCCCEE-----------------------EEEECCCCeEEEEEECCC-CcCeEEEccCCCEEE
Confidence            776665432          1233                       67777 778887775322 4789999999 7 78


Q ss_pred             EEEE-CCCcEEEEeCCCCcEEEEE
Q 006825          582 LSSS-MDKTVRLWHLSSKTCLKIF  604 (630)
Q Consensus       582 aSgS-~DgtVrIWDl~tg~~l~t~  604 (630)
                      ++.. .+++|.++|+.+++.++++
T Consensus       386 yv~n~~s~~VsVID~~t~kvv~tI  409 (426)
T 3c75_H          386 YALSAGTQTLHIYDAATGEELRSV  409 (426)
T ss_dssp             EEEETTTTEEEEEETTTCCEEEEE
T ss_pred             EEEcCCCCeEEEEECCCCCEEEEe
Confidence            8887 5999999999999999997

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=98.46  E-value=1.9e-05  Score=90.96  Aligned_cols=165  Identities=8%  Similarity=-0.061  Sum_probs=98.9

Q ss_pred             EEEEEeCCCCcccceeeeeEec--ccC-------cCEEEEEEccCCC---EEEEEeCCCcEEEEECcCCceeeeeeccc-
Q 006825          432 RVRQYGKSCKDLTALYKCQEIQ--AHN-------GSIWSIKFSLDGR---YLASAGEDCVIHVWQVVESERKGELLEKQ-  498 (630)
Q Consensus       432 ~VriWd~~~~el~~~~~v~tL~--gHt-------~~V~sVaFSpDG~---~LASgS~DgtIrVWDl~tg~~~~~l~~~~-  498 (630)
                      .|..||..+++.     +..++  .|.       ..+....+..+|+   .|+.++.+|.|+++|..+|+.+....... 
T Consensus       276 ~v~AlD~~TG~~-----~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~  350 (689)
T 1yiq_A          276 SIVAVNADTGEY-----VWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQ  350 (689)
T ss_dssp             EEEEEETTTCCE-----EEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCC
T ss_pred             eEEEEEccCCce-----eEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEecccccccc
Confidence            488888887763     22222  232       2222223333676   79999999999999999998874321000 


Q ss_pred             ----------------------ccCccc-----------ceEEEEECCCCCEEEEeeCCCeeeeeccccc---------c
Q 006825          499 ----------------------EDGHLN-----------MLLLANGSPEPTSLSPKHLDNHLEKKRRGRS---------I  536 (630)
Q Consensus       499 ----------------------~~gh~~-----------~V~svafSpdg~~lasgs~Dg~I~i~~~~~~---------~  536 (630)
                                            +.....           ....++++|+..+++....+.....+...+.         .
T Consensus       351 ~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~  430 (689)
T 1yiq_A          351 SWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMY  430 (689)
T ss_dssp             SSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSC
T ss_pred             ccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeecccccccccccccc
Confidence                                  000000           0113678888777777765544433332211         0


Q ss_pred             ccc----c------------cccCccccccEEEeC-CCCceEEeccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCCC
Q 006825          537 NRK----S------------LSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSK  598 (630)
Q Consensus       537 ~~~----s------------~s~d~~i~~~~Vwdl-sgk~l~tL~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg  598 (630)
                      ...    .            ...++.+   ..|++ +|+.+-++..+.. +....+... ++++.|+.|+.|+.||.++|
T Consensus       431 ~~g~~~~~~p~~~~~~~~~~~~~~g~l---~A~D~~tG~~~W~~~~~~~-~~~g~~~tagglvf~gt~dg~l~a~D~~tG  506 (689)
T 1yiq_A          431 QLGLRTGMMPEGAEGLLEMAKSWSGKL---IAWDPVKQQAAWEVPYVTI-FNGGTLSTAGNLVFEGSADGRVIAYAADTG  506 (689)
T ss_dssp             CCSSEECCCCSSHHHHHHHHTTCEEEE---EEEETTTTEEEEEEEESSS-CCCCEEEETTTEEEEECTTSEEEEEETTTC
T ss_pred             ccCccccccCcccccCCCCCCCcceeE---EEEECCCCCeEeEccCCCC-ccCccceECCCEEEEECCCCcEEEEECCCC
Confidence            000    0            0001223   67888 7888888765543 333345545 89999999999999999999


Q ss_pred             cEEEEEe
Q 006825          599 TCLKIFS  605 (630)
Q Consensus       599 ~~l~t~~  605 (630)
                      +.+..+.
T Consensus       507 ~~lw~~~  513 (689)
T 1yiq_A          507 EKLWEQP  513 (689)
T ss_dssp             CEEEEEE
T ss_pred             ccceeee
Confidence            9999997

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=98.42  E-value=2.7e-05  Score=79.22  Aligned_cols=184  Identities=10%  Similarity=-0.064  Sum_probs=108.8

Q ss_pred             CceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceee
Q 006825          369 GGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYK  448 (630)
Q Consensus       369 G~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~  448 (630)
                      +..+.++. .........+|+|+|++|.                            ++....+.|..|+.. ++      
T Consensus        34 ~~~~~~l~-~~~~~~egp~~~~~g~~l~----------------------------~~d~~~~~i~~~~~~-g~------   77 (305)
T 3dr2_A           34 DARLLTLY-DQATWSEGPAWWEAQRTLV----------------------------WSDLVGRRVLGWRED-GT------   77 (305)
T ss_dssp             TCCCEEEE-CCCSSEEEEEEEGGGTEEE----------------------------EEETTTTEEEEEETT-SC------
T ss_pred             CCceEEEe-cCCcCccCCeEeCCCCEEE----------------------------EEECCCCEEEEEeCC-CC------
Confidence            34445555 4566678899999887443                            556667789999873 32      


Q ss_pred             eeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccC-cccceEEEEECCCCCEEEEeeCCCee
Q 006825          449 CQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDG-HLNMLLLANGSPEPTSLSPKHLDNHL  527 (630)
Q Consensus       449 v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~g-h~~~V~svafSpdg~~lasgs~Dg~I  527 (630)
                      ...+..+...+..++|+++|+++++...++.|.+|+.. +.. ..+... ..+ ....+..+++.|+|.++++-..-++.
T Consensus        78 ~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~-~~~~~~-~~~~~~~~~~~i~~d~dG~l~~td~~~g~~  154 (305)
T 3dr2_A           78 VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQA-HLLVGR-YAGKRLNSPNDLIVARDGAIWFTDPPFGLR  154 (305)
T ss_dssp             EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE-EEEECE-ETTEECSCCCCEEECTTSCEEEECCSGGGS
T ss_pred             EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-CCE-EEEEec-cCCCccCCCCCEEECCCCCEEEeCcCCCcc
Confidence            23455567789999999999977776667889999985 442 222111 111 12345678999999988863211111


Q ss_pred             eeecccccccccccccCccccccEEEeC-CCCceEEeccCCCCEEEEEEcCC-CeEEEEECC------CcEEEEeCCCCc
Q 006825          528 EKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMD------KTVRLWHLSSKT  599 (630)
Q Consensus       528 ~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL~GHs~~V~sLafSPd-~~LaSgS~D------gtVrIWDl~tg~  599 (630)
                      ..+.....   ........+   ..++. +++... +. +....+.++|+|+ ++|+.+...      +.|++|++..+.
T Consensus       155 ~~~~~~~~---~~~~~~~~v---~~~d~~~g~~~~-~~-~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~  226 (305)
T 3dr2_A          155 KPSQGCPA---DPELAHHSV---YRLPPDGSPLQR-MA-DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGA  226 (305)
T ss_dssp             CGGGSCCC---CCSSSCEEE---EEECSSSCCCEE-EE-EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTE
T ss_pred             cccccccc---ccccCCCeE---EEEcCCCCcEEE-Ee-cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCC
Confidence            00000000   000000001   33444 344333 33 4456789999999 666665554      789999987654

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=98.37  E-value=2.6e-05  Score=89.53  Aligned_cols=167  Identities=7%  Similarity=-0.004  Sum_probs=97.5

Q ss_pred             EEEEEeCCCCcccceeeeeEecccC-------cCEEEEEEccCC---CEEEEEeCCCcEEEEECcCCceeeeeeccccc-
Q 006825          432 RVRQYGKSCKDLTALYKCQEIQAHN-------GSIWSIKFSLDG---RYLASAGEDCVIHVWQVVESERKGELLEKQED-  500 (630)
Q Consensus       432 ~VriWd~~~~el~~~~~v~tL~gHt-------~~V~sVaFSpDG---~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~-  500 (630)
                      .|..+|..+++..=.   ..+..|.       ....-+.+..+|   ..|+.++.+|.|.++|..+|+.+..+...... 
T Consensus       284 sv~AlD~~TG~~~W~---~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~  360 (677)
T 1kb0_A          284 SIVALDPDTGKYKWH---YQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNW  360 (677)
T ss_dssp             EEEEECTTTCCEEEE---EESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSS
T ss_pred             EEEEEECCCCCEEEE---EecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCc
Confidence            477777777653111   1122231       122233444588   68999999999999999999987654211000 


Q ss_pred             -----Ccccce------------------------EEEEECCCCCEEEEeeCCCeeeeecccc---c----------ccc
Q 006825          501 -----GHLNML------------------------LLANGSPEPTSLSPKHLDNHLEKKRRGR---S----------INR  538 (630)
Q Consensus       501 -----gh~~~V------------------------~svafSpdg~~lasgs~Dg~I~i~~~~~---~----------~~~  538 (630)
                           .....+                        ..++++|+..+++....+-....+....   .          ...
T Consensus       361 ~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  440 (677)
T 1kb0_A          361 ASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGW  440 (677)
T ss_dssp             EEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTC
T ss_pred             ccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeeccccccccccccccccccccc
Confidence                 000001                        1467888877777765443222221110   0          000


Q ss_pred             c-------c---cccCccccccEEEeC-CCCceEEeccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCCCcEEEEEe
Q 006825          539 K-------S---LSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS  605 (630)
Q Consensus       539 ~-------s---~s~d~~i~~~~Vwdl-sgk~l~tL~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg~~l~t~~  605 (630)
                      .       .   ......+   ..|++ +++.+-++. +...+....+... ++++.++.|+.|++||+.+|+++..|.
T Consensus       441 ~~g~~~~~~~~~~~~~g~l---~A~D~~tG~~~W~~~-~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~  515 (677)
T 1kb0_A          441 NTAKFFNAEPPKSKPFGRL---LAWDPVAQKAAWSVE-HVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAP  515 (677)
T ss_dssp             CCCEEECSSCCCSCCEEEE---EEEETTTTEEEEEEE-ESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             ccccccccccCCCCCccEE---EEEeCCCCcEEeecC-CCCCCcCcceEeCCCEEEEECCCCcEEEEECCCCceeeeee
Confidence            0       0   0001222   56777 788777765 3334555556655 888889999999999999999999997

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=98.37  E-value=0.00014  Score=77.36  Aligned_cols=232  Identities=7%  Similarity=-0.077  Sum_probs=126.1

Q ss_pred             ccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCcEEEEEeC
Q 006825          359 FDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGK  438 (630)
Q Consensus       359 tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~  438 (630)
                      ++. ++|..+++.+.++..|. ..  .++|+|||+++.......                   .....|..+..|.+||.
T Consensus        48 ~v~-v~D~~t~~~~~~i~~g~-~p--~i~~spDg~~lyv~n~~~-------------------~~~~rg~~~~~v~viD~  104 (373)
T 2mad_H           48 QQW-VLDAGSGSILGHVNGGF-LP--NPVAAHSGSEFALASTSF-------------------SRIAKGKRTDYVEVFDP  104 (373)
T ss_pred             EEE-EEECCCCeEEEEecCCC-CC--CeEECCCCCEEEEEeccc-------------------cccccCCCCCeEEEEEC
Confidence            677 99999999988887553 33  799999999876432110                   00111234567888988


Q ss_pred             CCCcccceeeeeEecc----c---CcCEEEEEEccCCCEEEEEeC--CCcEEEEECcCCceeee-eecccccCc-----c
Q 006825          439 SCKDLTALYKCQEIQA----H---NGSIWSIKFSLDGRYLASAGE--DCVIHVWQVVESERKGE-LLEKQEDGH-----L  503 (630)
Q Consensus       439 ~~~el~~~~~v~tL~g----H---t~~V~sVaFSpDG~~LASgS~--DgtIrVWDl~tg~~~~~-l~~~~~~gh-----~  503 (630)
                      .+.+.     +.++.-    +   ...-..++|+|||++|+.+..  +.+|.++| .+++.+.. +..   .+.     .
T Consensus       105 ~t~~~-----~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~---~~~~~~~~~  175 (373)
T 2mad_H          105 VTFLP-----IADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSS---PTCYHIHPG  175 (373)
T ss_pred             CCCcE-----EEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCC---CceEEEEeC
Confidence            76543     222211    0   123458999999999998874  47899999 99887766 421   110     0


Q ss_pred             cceEEEEECCCCCEEEEeeCCCeeeeecc------cccc--cccccccCc-cc-c-----ccEEEeCCCC---ceEEecc
Q 006825          504 NMLLLANGSPEPTSLSPKHLDNHLEKKRR------GRSI--NRKSLSLDH-MV-V-----PETVFALSDK---PICSFQG  565 (630)
Q Consensus       504 ~~V~svafSpdg~~lasgs~Dg~I~i~~~------~~~~--~~~s~s~d~-~i-~-----~~~Vwdlsgk---~l~tL~G  565 (630)
                      ..-..+.+++++++++... .+.+.....      ....  ....+..+. .. .     .-.+.++.+.   .+..+.-
T Consensus       176 ~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~  254 (373)
T 2mad_H          176 APSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDA  254 (373)
T ss_pred             CCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeee
Confidence            0001234445555554444 332210000      0000  000000000 00 0     0022333211   1111110


Q ss_pred             ----------CCCCEEEEEEcCC-CeEEEEEC----------CCcEEEEeCCCCcEEEEEecCCceEEEE-cCCCc-EEE
Q 006825          566 ----------HLDDVLDLSWSKS-QHLLSSSM----------DKTVRLWHLSSKTCLKIFSHSDYDISLV-DRLML-RFA  622 (630)
Q Consensus       566 ----------Hs~~V~sLafSPd-~~LaSgS~----------DgtVrIWDl~tg~~l~t~~H~~~V~sVa-s~~~~-~lA  622 (630)
                                .......++|+|+ ++|..+..          .+.|.+.|+.+++.+.++.-....++++ ++++. .+.
T Consensus       255 ~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g~~p~~i~~s~Dg~~~l~  334 (373)
T 2mad_H          255 LSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGHDVDAISVAQDGGPDLY  334 (373)
T ss_pred             cCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEECCCCcCeEEECCCCCeEEE
Confidence                      1122344788998 65554432          3589999999999999998555678888 77777 444


Q ss_pred             E
Q 006825          623 Y  623 (630)
Q Consensus       623 s  623 (630)
                      +
T Consensus       335 v  335 (373)
T 2mad_H          335 A  335 (373)
T ss_pred             E
Confidence            3

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.20  E-value=3e-05  Score=78.36  Aligned_cols=253  Identities=11%  Similarity=-0.057  Sum_probs=133.9

Q ss_pred             ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecC----CCCCcc---ccCCcceEEEeecCCC
Q 006825          350 NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSD----ERDTSS---EKGGRRSSSATDDSQD  422 (630)
Q Consensus       350 ~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~----D~dt~s---~~gh~~~Vsa~~~s~d  422 (630)
                      .+..++.++.+. .|| .+|+.+.+.. .+...+.++++.++|...+....    +.+...   ...+............
T Consensus        32 ~l~v~t~~~~l~-~~d-~~g~~~~~~~-~~~~~~~~~~~~~~g~l~v~t~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~~  108 (330)
T 3hxj_A           32 TIYLGSSNKNLY-AIN-TDGSVKWFFK-SGEIIECRPSIGKDGTIYFGSDKVYAINPDGTEKWRFDTKKAIVSDFTIFED  108 (330)
T ss_dssp             CEECSSTTTTTE-EEC-TTSCEEESSC-GGGEEEECCEETTTTEECCSSCEEEEECCCGGGGGGSCC-----CCEEEETT
T ss_pred             eEEEEcCCCEEE-EEC-CCCcEEEEEe-cCCCcccceEEecCCcEEEecCcEEEECCCCcEEEEEECCCCcccCceEECC
Confidence            566778888888 899 8888776655 44455677777777765442211    110000   1111111111112244


Q ss_pred             eEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccCc
Q 006825          423 VSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGH  502 (630)
Q Consensus       423 ~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh  502 (630)
                      .++.+..++.|..++.. ++.     ...+..+...+.++.+.++|+ |..++.++.|..||.. ++....+.     ..
T Consensus       109 ~l~v~t~~~~l~~~d~~-g~~-----~~~~~~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~-----~~  175 (330)
T 3hxj_A          109 ILYVTSMDGHLYAINTD-GTE-----KWRFKTKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRFK-----TN  175 (330)
T ss_dssp             EEEEECTTSEEEEECTT-SCE-----EEEEECSSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEEE-----CS
T ss_pred             EEEEEecCCEEEEEcCC-CCE-----EEEEcCCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEEe-----cC
Confidence            48888889999999987 432     333444555677788888888 4457788999999998 66554431     22


Q ss_pred             ccceEEEEECCCCCEEEEeeCCCeeeeeccccccc---------ccc--cccCccc-c---cc--EEEeCCCCceEEecc
Q 006825          503 LNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSIN---------RKS--LSLDHMV-V---PE--TVFALSDKPICSFQG  565 (630)
Q Consensus       503 ~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~---------~~s--~s~d~~i-~---~~--~Vwdlsgk~l~tL~G  565 (630)
                      ...+..+.+.+++.+++..   +.+..++......         ...  ...++.+ .   ..  ..++.+++.+..+..
T Consensus       176 ~~~~~~~~~d~~g~l~v~t---~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~~g~l~v~t~~~gl~~~~~~g~~~~~~~~  252 (330)
T 3hxj_A          176 DAITSAASIGKDGTIYFGS---DKVYAINPDGTEKWNFYAGYWTVTRPAISEDGTIYVTSLDGHLYAINPDGTEKWRFKT  252 (330)
T ss_dssp             SCCCSCCEECTTCCEEEES---SSEEEECTTSCEEEEECCSSCCCSCCEECTTSCEEEEETTTEEEEECTTSCEEEEEEC
T ss_pred             CCceeeeEEcCCCEEEEEe---CEEEEECCCCcEEEEEccCCcceeceEECCCCeEEEEcCCCeEEEECCCCCEeEEeeC
Confidence            2345556666777766554   4443333110000         000  0001000 0   00  111123334444443


Q ss_pred             CCCCEEEEEEcCCCeEEEEECCCcEEEEeCCCCcEEEEEe-cCCceEEEE-cCCCcEEE
Q 006825          566 HLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYDISLV-DRLMLRFA  622 (630)
Q Consensus       566 Hs~~V~sLafSPd~~LaSgS~DgtVrIWDl~tg~~l~t~~-H~~~V~sVa-s~~~~~lA  622 (630)
                      ....+..+.+.+++.|..++.++.|..+| .+++.+..+. ....+.++. +..+..++
T Consensus       253 ~~~~~~~~~~~~~g~l~v~t~~ggl~~~d-~~g~~~~~~~~~~~~~~~~~~d~~g~l~~  310 (330)
T 3hxj_A          253 GKRIESSPVIGNTDTIYFGSYDGHLYAIN-PDGTEKWNFETGSWIIATPVIDENGTIYF  310 (330)
T ss_dssp             SSCCCSCCEECTTSCEEEECTTCEEEEEC-TTSCEEEEEECSSCCCSCCEECTTCCEEE
T ss_pred             CCCccccceEcCCCeEEEecCCCCEEEEC-CCCcEEEEEEcCCccccceEEcCCCEEEE
Confidence            33334445554445566666666677776 6666666666 445555555 45555444

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.17  E-value=9.3e-05  Score=74.70  Aligned_cols=195  Identities=10%  Similarity=0.007  Sum_probs=104.0

Q ss_pred             ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecC
Q 006825          350 NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQE  429 (630)
Q Consensus       350 ~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~  429 (630)
                      .+..++.++.+. .+|.. |+.+.... .+...+.+++..++|.                              ++.+..
T Consensus       109 ~l~v~t~~~~l~-~~d~~-g~~~~~~~-~~~~~~~~~~~~~~g~------------------------------l~vgt~  155 (330)
T 3hxj_A          109 ILYVTSMDGHLY-AINTD-GTEKWRFK-TKKAIYATPIVSEDGT------------------------------IYVGSN  155 (330)
T ss_dssp             EEEEECTTSEEE-EECTT-SCEEEEEE-CSSCCCSCCEECTTSC------------------------------EEEECT
T ss_pred             EEEEEecCCEEE-EEcCC-CCEEEEEc-CCCceeeeeEEcCCCE------------------------------EEEEcC
Confidence            566677777777 78877 76655554 2222333333333322                              556666


Q ss_pred             CcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEE
Q 006825          430 RVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLA  509 (630)
Q Consensus       430 Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~sv  509 (630)
                      ++.|..|+.. ++.     ...+..+...+.++.+.++|.+++..   +.|..|| .+++.....     ......+.++
T Consensus       156 ~~~l~~~d~~-g~~-----~~~~~~~~~~~~~~~~d~~g~l~v~t---~~l~~~d-~~g~~~~~~-----~~~~~~~~~~  220 (330)
T 3hxj_A          156 DNYLYAINPD-GTE-----KWRFKTNDAITSAASIGKDGTIYFGS---DKVYAIN-PDGTEKWNF-----YAGYWTVTRP  220 (330)
T ss_dssp             TSEEEEECTT-SCE-----EEEEECSSCCCSCCEECTTCCEEEES---SSEEEEC-TTSCEEEEE-----CCSSCCCSCC
T ss_pred             CCEEEEECCC-CCE-----eEEEecCCCceeeeEEcCCCEEEEEe---CEEEEEC-CCCcEEEEE-----ccCCcceece
Confidence            7788888876 432     23334445567778888888865544   7788899 666655443     2222446667


Q ss_pred             EECCCCCEEEEeeCCCeeeeecccccccccccccCc-----ccc--ccEEEe-----------CCCCceEEeccCCCCEE
Q 006825          510 NGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDH-----MVV--PETVFA-----------LSDKPICSFQGHLDDVL  571 (630)
Q Consensus       510 afSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~-----~i~--~~~Vwd-----------lsgk~l~tL~GHs~~V~  571 (630)
                      ...+++.+++.. .++.+...+..... ........     ...  ...+|-           .+++.+..+.-....+.
T Consensus       221 ~~~~~g~l~v~t-~~~gl~~~~~~g~~-~~~~~~~~~~~~~~~~~~~g~l~v~t~~ggl~~~d~~g~~~~~~~~~~~~~~  298 (330)
T 3hxj_A          221 AISEDGTIYVTS-LDGHLYAINPDGTE-KWRFKTGKRIESSPVIGNTDTIYFGSYDGHLYAINPDGTEKWNFETGSWIIA  298 (330)
T ss_dssp             EECTTSCEEEEE-TTTEEEEECTTSCE-EEEEECSSCCCSCCEECTTSCEEEECTTCEEEEECTTSCEEEEEECSSCCCS
T ss_pred             EECCCCeEEEEc-CCCeEEEECCCCCE-eEEeeCCCCccccceEcCCCeEEEecCCCCEEEECCCCcEEEEEEcCCcccc
Confidence            777777665544 44444333321111 00000000     000  113333           23444444444444455


Q ss_pred             EEEEcCCCeEEEEECCCcEEEEe
Q 006825          572 DLSWSKSQHLLSSSMDKTVRLWH  594 (630)
Q Consensus       572 sLafSPd~~LaSgS~DgtVrIWD  594 (630)
                      ++...+++.|..++.+|.+++..
T Consensus       299 ~~~~d~~g~l~~gt~~G~~~~~~  321 (330)
T 3hxj_A          299 TPVIDENGTIYFGTRNGKFYALF  321 (330)
T ss_dssp             CCEECTTCCEEEECTTSCEEEEE
T ss_pred             ceEEcCCCEEEEEcCCCeEEEEe
Confidence            56655556666677777777643

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=98.15  E-value=3.5e-07  Score=97.00  Aligned_cols=145  Identities=10%  Similarity=0.047  Sum_probs=77.1

Q ss_pred             CCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeeccccc
Q 006825          421 QDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQED  500 (630)
Q Consensus       421 ~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~  500 (630)
                      ...++.++.|+.|+.||..+++.     +..+..  +.+.+..+..+++++++++.|+.|+.||..+|+.+..+.     
T Consensus         9 ~~~v~~gs~dg~v~a~d~~tG~~-----~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~-----   76 (369)
T 2hz6_A            9 ETLLFVSTLDGSLHAVSKRTGSI-----KWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLP-----   76 (369)
T ss_dssp             TTEEEEEETTSEEEEEETTTCCE-----EEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECS-----
T ss_pred             CCEEEEEcCCCEEEEEECCCCCE-----EEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeee-----
Confidence            34478889999999999988863     344444  456666677788888888999999999999888765431     


Q ss_pred             Ccc-cceE-EEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeC-CCCceEEeccCCCCEEEEEEcC
Q 006825          501 GHL-NMLL-LANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSWSK  577 (630)
Q Consensus       501 gh~-~~V~-svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL~GHs~~V~sLafSP  577 (630)
                      .+. ..+. ...+. .+..+++++.++.+                       ..|+. +|+.+.++..+.    .+.++|
T Consensus        77 ~~~~~~~~~sp~~~-~~~~v~~g~~dg~v-----------------------~a~D~~tG~~~w~~~~~~----~~~~~p  128 (369)
T 2hz6_A           77 FTIPELVQASPCRS-SDGILYMGKKQDIW-----------------------YVIDLLTGEKQQTLSSAF----ADSLSP  128 (369)
T ss_dssp             CCHHHHHTTCSCC------CCCCEEEEEE-----------------------EEECCC----------------------
T ss_pred             ccCccccccCceEe-cCCEEEEEeCCCEE-----------------------EEEECCCCcEEEEecCCC----cccccc
Confidence            111 0110 00111 23455666677777                       66776 677777666554    234566


Q ss_pred             C-CeEEEEECCCcEEEEeCCCCcEEEEEe
Q 006825          578 S-QHLLSSSMDKTVRLWHLSSKTCLKIFS  605 (630)
Q Consensus       578 d-~~LaSgS~DgtVrIWDl~tg~~l~t~~  605 (630)
                      + +.|+.++.|+.|+.||..+|+.+..+.
T Consensus       129 ~~~~v~~~~~dg~v~a~d~~tG~~~W~~~  157 (369)
T 2hz6_A          129 STSLLYLGRTEYTITMYDTKTRELRWNAT  157 (369)
T ss_dssp             ----EEEEEEEEEEECCCSSSSSCCCEEE
T ss_pred             cCCEEEEEecCCEEEEEECCCCCEEEeEe
Confidence            7 889999999999999999998876654

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=98.14  E-value=0.00012  Score=78.78  Aligned_cols=231  Identities=10%  Similarity=-0.012  Sum_probs=132.5

Q ss_pred             CCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCcEEEEE
Q 006825          357 DSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQY  436 (630)
Q Consensus       357 D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriW  436 (630)
                      ++++. +-|..+++.+.++..|.. . . ++++|||+++...+.-                 ..  ....|..+..|.+|
T Consensus        58 ~~~V~-ViD~~t~~v~~~I~vG~~-P-~-va~spDG~~lyVan~~-----------------~~--r~~~G~~~~~Vsvi  114 (386)
T 3sjl_D           58 VTQQF-VIDGEAGRVIGMIDGGFL-P-N-PVVADDGSFIAHASTV-----------------FS--RIARGERTDYVEVF  114 (386)
T ss_dssp             SEEEE-EEETTTTEEEEEEEECSS-C-E-EEECTTSSCEEEEEEE-----------------EE--ETTEEEEEEEEEEE
T ss_pred             CCEEE-EEECCCCeEEEEEECCCC-C-c-EEECCCCCEEEEEccc-----------------cc--ccccCCCCCEEEEE
Confidence            56777 889999999998885544 3 3 9999999977432100                 00  00112345679999


Q ss_pred             eCCCCcccceeeeeEeccc-------CcCEEEEEEccCCCEEEEEeC--CCcEEEEECcCCceeeeeecccccCcc----
Q 006825          437 GKSCKDLTALYKCQEIQAH-------NGSIWSIKFSLDGRYLASAGE--DCVIHVWQVVESERKGELLEKQEDGHL----  503 (630)
Q Consensus       437 d~~~~el~~~~~v~tL~gH-------t~~V~sVaFSpDG~~LASgS~--DgtIrVWDl~tg~~~~~l~~~~~~gh~----  503 (630)
                      |..+.+.     +.++.-.       ...-..++|+|||++|+.+..  +++|.|+|+.+++.+.++..   .+..    
T Consensus       115 D~~t~~v-----~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v---~g~~~~~P  186 (386)
T 3sjl_D          115 DPVTLLP-----TADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDV---PDCYHIFP  186 (386)
T ss_dssp             CTTTCCE-----EEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEEC---CSEEEEEE
T ss_pred             ECCCCeE-----EEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEEC---CCcceeec
Confidence            9987753     3333211       113457999999999888864  68999999999998887632   1110    


Q ss_pred             -cceEEEEECCCCCEEEEeeCC-Ceeeeeccccccc---c-----ccc-ccCcccc----cc--EEEeCCCCceEEecc-
Q 006825          504 -NMLLLANGSPEPTSLSPKHLD-NHLEKKRRGRSIN---R-----KSL-SLDHMVV----PE--TVFALSDKPICSFQG-  565 (630)
Q Consensus       504 -~~V~svafSpdg~~lasgs~D-g~I~i~~~~~~~~---~-----~s~-s~d~~i~----~~--~Vwdlsgk~l~tL~G-  565 (630)
                       +.-..++.++||+++...... +.+.... .....   .     ..+ ..++...    ..  .+++..+..+..+.. 
T Consensus       187 ~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~-~~~~~~~~~~~~~~~~~~~~dG~~~~vs~~g~V~v~d~~~~~~~v~~~~  265 (386)
T 3sjl_D          187 TAPDTFFMHCRDGSLAKVAFGTEGTPEITH-TEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAV  265 (386)
T ss_dssp             EETTEEEEEETTSCEEEEECCSSSCCEEEE-CCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCE
T ss_pred             CCCceeEEECCCCCEEEEECCCCCeEEEee-cceeccccccccccceeEcCCCcEEEEeCCCEEEEEECCCCcceeecce
Confidence             011124677888887776654 5542111 01000   0     000 0111110    00  223332221111100 


Q ss_pred             ------------CCCCEEEEEEcCC-CeEEEEEC----------CCcEEEEeCCCCcEEEEEecCCceEEEE-cCCCc
Q 006825          566 ------------HLDDVLDLSWSKS-QHLLSSSM----------DKTVRLWHLSSKTCLKIFSHSDYDISLV-DRLML  619 (630)
Q Consensus       566 ------------Hs~~V~sLafSPd-~~LaSgS~----------DgtVrIWDl~tg~~l~t~~H~~~V~sVa-s~~~~  619 (630)
                                  ....+..++++|+ +.|...-.          ..+|-+.|+.+++.++.+.-...++.|+ ++++.
T Consensus       266 ~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg~~~~~lavs~D~~  343 (386)
T 3sjl_D          266 EALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEK  343 (386)
T ss_dssp             ESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECSSSS
T ss_pred             eccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECCCCcceEEECCCCC
Confidence                        0112334777888 55544322          2579999999999999998444777888 66664

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=98.11  E-value=0.00015  Score=83.14  Aligned_cols=146  Identities=10%  Similarity=-0.015  Sum_probs=85.4

Q ss_pred             EEEEEccCCCEEEEEeCCC-------------------cEEEEECcCCceeeeeecccccCcc-------cceEEEEECC
Q 006825          460 WSIKFSLDGRYLASAGEDC-------------------VIHVWQVVESERKGELLEKQEDGHL-------NMLLLANGSP  513 (630)
Q Consensus       460 ~sVaFSpDG~~LASgS~Dg-------------------tIrVWDl~tg~~~~~l~~~~~~gh~-------~~V~svafSp  513 (630)
                      ..++|+|++.+|+.+..++                   +|..+|..+|+.+..+..   ..|.       .....+....
T Consensus       246 ~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~---~~~d~wd~~~~~~p~l~~~~~  322 (677)
T 1kb0_A          246 DSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQE---TPGDNWDYTSTQPMILADIKI  322 (677)
T ss_dssp             SCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEES---STTCCSCCCCCSCCEEEEEEE
T ss_pred             cceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEec---CCCcccccccCCCcEEEeccc
Confidence            3678999999888887664                   599999999998766421   1121       1222233334


Q ss_pred             CC---CEEEEeeCCCeeeeecccccccccccccCccccccEEEeCCCCceE------------Ee---ccCCCCEEEEEE
Q 006825          514 EP---TSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPIC------------SF---QGHLDDVLDLSW  575 (630)
Q Consensus       514 dg---~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~------------tL---~GHs~~V~sLaf  575 (630)
                      +|   .+++.+..++.+.+.+......+........ .+..-++.+++++.            .+   .|.... ..++|
T Consensus       323 dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~-~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w-~~~a~  400 (677)
T 1kb0_A          323 AGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPV-NWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNW-HPMSF  400 (677)
T ss_dssp             TTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCC-SSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCS-SCCEE
T ss_pred             CCcEeeEEEEECCCCEEEEEECCCCCEecccccccc-CcccccCCCCceeeccccCcCCCccEECcCcccccCC-CCceE
Confidence            66   6788888899887776655333222211110 00011112222221            11   111111 36788


Q ss_pred             cCC-CeEEEEEC-------------------------------------------CCcEEEEeCCCCcEEEEEecCCce
Q 006825          576 SKS-QHLLSSSM-------------------------------------------DKTVRLWHLSSKTCLKIFSHSDYD  610 (630)
Q Consensus       576 SPd-~~LaSgS~-------------------------------------------DgtVrIWDl~tg~~l~t~~H~~~V  610 (630)
                      +|+ ++|+....                                           .++|..||+.+|+.+..+.+...+
T Consensus       401 dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~  479 (677)
T 1kb0_A          401 NPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHVSPW  479 (677)
T ss_dssp             ETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEESSSC
T ss_pred             cCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecCCCCCC
Confidence            998 77766543                                           278999999999999988754433

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=98.10  E-value=0.00026  Score=77.05  Aligned_cols=238  Identities=8%  Similarity=-0.026  Sum_probs=134.7

Q ss_pred             CccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCcEEEEEe
Q 006825          358 SFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYG  437 (630)
Q Consensus       358 ~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd  437 (630)
                      ++|. +.|..+++.+.++..|.. .  .++++|||+++..+...                 .  ...+.|..++.|.++|
T Consensus        99 ~~Vs-VID~~t~~vv~~I~vG~~-P--gia~SpDgk~lyVan~~-----------------~--~~~~~G~~~~~VsviD  155 (426)
T 3c75_H           99 TQQF-VIDGSTGRILGMTDGGFL-P--HPVAAEDGSFFAQASTV-----------------F--ERIARGKRTDYVEVFD  155 (426)
T ss_dssp             EEEE-EEETTTTEEEEEEEECSS-C--EEEECTTSSCEEEEEEE-----------------E--EETTEEEEEEEEEEEC
T ss_pred             CeEE-EEECCCCEEEEEEECCCC-C--ceEECCCCCEEEEEecc-----------------c--cccccCCCCCEEEEEE
Confidence            5777 999999999998886644 4  79999999977532100                 0  0011233466899999


Q ss_pred             CCCCcccceeeeeEec-c------cCcCEEEEEEccCCCEEEEEeC--CCcEEEEECcCCceeeeeecccccCcc---cc
Q 006825          438 KSCKDLTALYKCQEIQ-A------HNGSIWSIKFSLDGRYLASAGE--DCVIHVWQVVESERKGELLEKQEDGHL---NM  505 (630)
Q Consensus       438 ~~~~el~~~~~v~tL~-g------Ht~~V~sVaFSpDG~~LASgS~--DgtIrVWDl~tg~~~~~l~~~~~~gh~---~~  505 (630)
                      ..+.+.     +.++. +      ....-..++|+|||++|+.+..  +++|.+.|+.+.+.+.++..... .+.   +.
T Consensus       156 ~~t~~v-----v~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~-~~~~p~g~  229 (426)
T 3c75_H          156 PVTFLP-----IADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDC-YHIFPASP  229 (426)
T ss_dssp             TTTCCE-----EEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE-EEEEEEET
T ss_pred             CCCCcE-----EEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCc-eeeccCCC
Confidence            987753     23332 1      0122457899999999999874  57899999999988877642110 000   11


Q ss_pred             eEEEEECCCCCEEEEeeCCCeeee-----eccccccc--ccccccCcccc-----c--cEEEeCCCCceEEecc------
Q 006825          506 LLLANGSPEPTSLSPKHLDNHLEK-----KRRGRSIN--RKSLSLDHMVV-----P--ETVFALSDKPICSFQG------  565 (630)
Q Consensus       506 V~svafSpdg~~lasgs~Dg~I~i-----~~~~~~~~--~~s~s~d~~i~-----~--~~Vwdlsgk~l~tL~G------  565 (630)
                      -..+.++++|++++....++++..     +.......  ...+..+....     .  -.+.+..+..+..+..      
T Consensus       230 ~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~  309 (426)
T 3c75_H          230 TVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTE  309 (426)
T ss_dssp             TEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCT
T ss_pred             cEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccc
Confidence            123567788887766655555431     11111000  00011111000     0  0222322211111100      


Q ss_pred             -------CCCCEEEEEEcCC-CeEEEEE----------CCCcEEEEeCCCCcEEEEEecCCceEEEE-cCCCc-EEEEe
Q 006825          566 -------HLDDVLDLSWSKS-QHLLSSS----------MDKTVRLWHLSSKTCLKIFSHSDYDISLV-DRLML-RFAYG  624 (630)
Q Consensus       566 -------Hs~~V~sLafSPd-~~LaSgS----------~DgtVrIWDl~tg~~l~t~~H~~~V~sVa-s~~~~-~lAsg  624 (630)
                             .......++|+|+ ++|...-          .+++|-+.|+.+.+.+.++.-....+.|+ ++++. .+.+.
T Consensus       310 ~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg~~P~gia~spDg~~~lyv~  388 (426)
T 3c75_H          310 AERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELGHEIDSINVSQDAEPLLYAL  388 (426)
T ss_dssp             TTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECCSSSCEEEEE
T ss_pred             cccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECCCCcCeEEEccCCCEEEEEE
Confidence                   0011123689998 6554432          14579999999999999998333567787 77766 44443

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.09  E-value=0.0083  Score=59.29  Aligned_cols=202  Identities=8%  Similarity=-0.086  Sum_probs=114.6

Q ss_pred             ceeEEEeec----ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEE
Q 006825          341 IVQELMRRQ----NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSA  416 (630)
Q Consensus       341 ~V~~Lafs~----~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa  416 (630)
                      .+..+++.+    ..++-...+.|. .++..++....... ........+++.+++.++.                    
T Consensus        37 ~~~gi~~d~~~~~ly~~d~~~~~I~-~~~~~g~~~~~~~~-~~~~~p~~ia~d~~~~~ly--------------------   94 (267)
T 1npe_A           37 VIIGLAFDCVDKVVYWTDISEPSIG-RASLHGGEPTTIIR-QDLGSPEGIALDHLGRTIF--------------------   94 (267)
T ss_dssp             EEEEEEEETTTTEEEEEETTTTEEE-EEESSSCCCEEEEC-TTCCCEEEEEEETTTTEEE--------------------
T ss_pred             cEEEEEEecCCCEEEEEECCCCEEE-EEecCCCCcEEEEE-CCCCCccEEEEEecCCeEE--------------------
Confidence            356677765    233444556777 77776554433332 3335667788887654432                    


Q ss_pred             eecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeC---CCcEEEEECcCCceeee
Q 006825          417 TDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGE---DCVIHVWQVVESERKGE  493 (630)
Q Consensus       417 ~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~---DgtIrVWDl~tg~~~~~  493 (630)
                              ++-....+|.+++.......     ..+.........|+++|++..|..+..   .+.|.++++.. .....
T Consensus        95 --------v~d~~~~~I~~~~~~g~~~~-----~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg-~~~~~  160 (267)
T 1npe_A           95 --------WTDSQLDRIEVAKMDGTQRR-----VLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDG-TNRRI  160 (267)
T ss_dssp             --------EEETTTTEEEEEETTSCSCE-----EEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTS-CCCEE
T ss_pred             --------EEECCCCEEEEEEcCCCCEE-----EEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCC-CCcEE
Confidence                    33334557777877543211     111212245689999996555544443   36788888753 33333


Q ss_pred             eecccccCcccceEEEEECCCCCEE-EEeeCCCeeeeecccccccccccccCccccccEEEeCCCCceEEeccCCCCEEE
Q 006825          494 LLEKQEDGHLNMLLLANGSPEPTSL-SPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLD  572 (630)
Q Consensus       494 l~~~~~~gh~~~V~svafSpdg~~l-asgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL~GHs~~V~s  572 (630)
                      +.    .........+++++++..| ++....+.|                       .++++.+..+..+.........
T Consensus       161 ~~----~~~~~~P~gia~d~~~~~lyv~d~~~~~I-----------------------~~~~~~g~~~~~~~~~~~~P~g  213 (267)
T 1npe_A          161 LA----QDNLGLPNGLTFDAFSSQLCWVDAGTHRA-----------------------ECLNPAQPGRRKVLEGLQYPFA  213 (267)
T ss_dssp             EE----CTTCSCEEEEEEETTTTEEEEEETTTTEE-----------------------EEEETTEEEEEEEEECCCSEEE
T ss_pred             EE----ECCCCCCcEEEEcCCCCEEEEEECCCCEE-----------------------EEEecCCCceEEEecCCCCceE
Confidence            21    1223456789999986554 444445566                       4444433322222111223356


Q ss_pred             EEEcCCCeEEEEECCCcEEEEeCCCCcEEEEEe
Q 006825          573 LSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFS  605 (630)
Q Consensus       573 LafSPd~~LaSgS~DgtVrIWDl~tg~~l~t~~  605 (630)
                      |++..+.++++....+.|.++|..+++.+.++.
T Consensus       214 i~~d~~~lyva~~~~~~v~~~d~~~g~~~~~i~  246 (267)
T 1npe_A          214 VTSYGKNLYYTDWKTNSVIAMDLAISKEMDTFH  246 (267)
T ss_dssp             EEEETTEEEEEETTTTEEEEEETTTTEEEEEEC
T ss_pred             EEEeCCEEEEEECCCCeEEEEeCCCCCceEEEc
Confidence            666532455555567899999999999999886

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=98.09  E-value=0.00014  Score=75.60  Aligned_cols=203  Identities=8%  Similarity=-0.079  Sum_probs=113.2

Q ss_pred             eEEEEcCCCceEeeecce-eeecCccceeEEEeec----ceEeec---CCCccEecccCCCCceeEEecCCccCCEE-EE
Q 006825          316 KKVKEVGTGRQLTIEEFE-MCVGHSPIVQELMRRQ----NVEEGN---KDSFDLNNNGSSGGGMKSKKKGSWFKSIR-TV  386 (630)
Q Consensus       316 ~~l~dv~TG~~lt~eef~-~l~GHs~~V~~Lafs~----~laSgS---~D~tvr~vWD~~tG~~~~~lk~gH~~~V~-sV  386 (630)
                      ...+|..||+.+..-.+. ....+...+..|++.+    ..++.+   .+..+. +||..+|+..+.+. +|..... .+
T Consensus        95 i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~-v~d~~~g~~~r~~~-~~~~~~~~~~  172 (343)
T 2qe8_A           95 LVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALI-RVDLQTGLAARVLQ-GYPGIAPEDI  172 (343)
T ss_dssp             EEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEE-EEETTTCCEEEECT-TCTTTSCCSC
T ss_pred             EEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEE-EEECCCCCEEEEec-CCCccccccc
Confidence            345666777654221221 1122344567888885    235554   678898 99999998777665 5432110 13


Q ss_pred             EEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCe--EEEecCCc-EEEEEeCC---CCcccceeee--eEecccCcC
Q 006825          387 ASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDV--SFHGQERV-RVRQYGKS---CKDLTALYKC--QEIQAHNGS  458 (630)
Q Consensus       387 AfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~--l~Sgs~Dg-~VriWd~~---~~el~~~~~v--~tL~gHt~~  458 (630)
                      .|.++|+.+.+.+.+......   ...+..+++++++  ++.+...+ +|+.++..   ...+......  -...++.+.
T Consensus       173 ~~~~~g~~~~~~~~~g~~~~~---~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~  249 (343)
T 2qe8_A          173 DLVIDGVPVQIGQPDGTVIRP---HLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPI  249 (343)
T ss_dssp             CCEETTEECBEECTTSCEECC---CCCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCS
T ss_pred             ceeECCEEEEeccCCCceece---ecccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCC
Confidence            344555544433322211000   1123455666665  44444333 55555431   1111000000  012345566


Q ss_pred             EEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCee
Q 006825          459 IWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHL  527 (630)
Q Consensus       459 V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I  527 (630)
                      ...|+++++|+++++...++.|.+||..+++. ..+.   ...+......++|.+++.++++......+
T Consensus       250 pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~-~~~~---~~~~~~~p~~va~~~~g~l~v~~~~~~~~  314 (343)
T 2qe8_A          250 CDGISIDKDHNIYVGDLAHSAIGVITSADRAY-KLLV---TDEKLSWTDSFNFGSDGYLYFDCNQLHHS  314 (343)
T ss_dssp             CSCEEECTTCCEEEEEGGGTEEEEEETTTTEE-EEEE---ECGGGSCEEEEEECTTSCEEEEECCGGGS
T ss_pred             CceEEECCCCCEEEEccCCCeEEEEECCCCCE-EEEE---ECCceecCCeeEECCCCcEEEEeCccccc
Confidence            77899999999999999999999999855653 2221   11234568899999999988887654433

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=98.08  E-value=0.00024  Score=81.72  Aligned_cols=154  Identities=12%  Similarity=-0.025  Sum_probs=88.7

Q ss_pred             ceEeecCCCccEecccCCCCceeEEecCC-ccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEec
Q 006825          350 NVEEGNKDSFDLNNNGSSGGGMKSKKKGS-WFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQ  428 (630)
Q Consensus       350 ~laSgS~D~tvr~vWD~~tG~~~~~lk~g-H~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs  428 (630)
                      .+..++.|+.+. .+|.+||+.+-++... +......+..+|                       +.    ....++.+.
T Consensus       123 ~v~v~~~dg~l~-AlDa~TG~~~W~~~~~~~~~~~~~~~~sP-----------------------~v----~~g~v~vg~  174 (689)
T 1yiq_A          123 KVYVGVLDGRLE-AIDAKTGQRAWSVDTRADHKRSYTITGAP-----------------------RV----VNGKVVIGN  174 (689)
T ss_dssp             EEEEECTTSEEE-EEETTTCCEEEEEECCSCTTSCCBCCSCC-----------------------EE----ETTEEEECC
T ss_pred             EEEEEccCCEEE-EEECCCCCEeeeecCcCCCCCCccccCCc-----------------------EE----ECCEEEEEe
Confidence            677888999999 9999999998877632 211111111111                       00    011122221


Q ss_pred             ------CCcEEEEEeCCCCcccceeeeeEec-------------------------------ccCcCEEEEEEccCCCEE
Q 006825          429 ------ERVRVRQYGKSCKDLTALYKCQEIQ-------------------------------AHNGSIWSIKFSLDGRYL  471 (630)
Q Consensus       429 ------~Dg~VriWd~~~~el~~~~~v~tL~-------------------------------gHt~~V~sVaFSpDG~~L  471 (630)
                            .++.|+.||..++++.     ..+.                               ++......++++|++.+|
T Consensus       175 ~~~~~~~~g~v~a~D~~tG~~~-----W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~v  249 (689)
T 1yiq_A          175 GGAEFGVRGYVTAYDAETGKEA-----WRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLL  249 (689)
T ss_dssp             BCTTTCCBCEEEEEETTTCCEE-----EEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEE
T ss_pred             CCCccCCCCEEEEEECCCCcEE-----EEecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEE
Confidence                  3677888887776531     1111                               111112368899988999


Q ss_pred             EEEeCCCc-------------------EEEEECcCCceeeeeeccccc--C--cccceEEEEECCCCC---EEEEeeCCC
Q 006825          472 ASAGEDCV-------------------IHVWQVVESERKGELLEKQED--G--HLNMLLLANGSPEPT---SLSPKHLDN  525 (630)
Q Consensus       472 ASgS~Dgt-------------------IrVWDl~tg~~~~~l~~~~~~--g--h~~~V~svafSpdg~---~lasgs~Dg  525 (630)
                      +.+..++.                   |..||..+|+.+..+......  .  ....+....+..+|+   +++.+..++
T Consensus       250 y~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G  329 (689)
T 1yiq_A          250 YIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNG  329 (689)
T ss_dssp             EEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTS
T ss_pred             EEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCC
Confidence            99988764                   999999999987664211000  0  111222222223554   677888889


Q ss_pred             eeeeecccccc
Q 006825          526 HLEKKRRGRSI  536 (630)
Q Consensus       526 ~I~i~~~~~~~  536 (630)
                      .+..++.....
T Consensus       330 ~l~~lD~~tG~  340 (689)
T 1yiq_A          330 FFYVIDRATGE  340 (689)
T ss_dssp             EEEEEETTTCC
T ss_pred             eEEEEECCCCC
Confidence            88777765533

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=98.05  E-value=0.001  Score=69.04  Aligned_cols=214  Identities=7%  Similarity=-0.035  Sum_probs=118.0

Q ss_pred             ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCC-------CCcc----ccCCcce-----
Q 006825          350 NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDER-------DTSS----EKGGRRS-----  413 (630)
Q Consensus       350 ~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~-------dt~s----~~gh~~~-----  413 (630)
                      .+..++.++.+. .+|.++|+.+-+... ........+. .+|. +..++.+.       .++.    .......     
T Consensus       105 ~v~v~~~~g~l~-a~d~~tG~~~W~~~~-~~~~~~~p~~-~~~~-v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~  180 (376)
T 3q7m_A          105 HVYIGSEKAQVY-ALNTSDGTVAWQTKV-AGEALSRPVV-SDGL-VLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRG  180 (376)
T ss_dssp             EEEEEETTSEEE-EEETTTCCEEEEEEC-SSCCCSCCEE-ETTE-EEEECTTSEEEEEETTTCCEEEEEECCC-----CC
T ss_pred             EEEEEcCCCEEE-EEECCCCCEEEEEeC-CCceEcCCEE-ECCE-EEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecC
Confidence            677788889999 999999998876652 2111111111 1333 33333222       1111    0000000     


Q ss_pred             EEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccC--c-----CEEEEEEcc--CCCEEEEEeCCCcEEEEE
Q 006825          414 SSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHN--G-----SIWSIKFSL--DGRYLASAGEDCVIHVWQ  484 (630)
Q Consensus       414 Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt--~-----~V~sVaFSp--DG~~LASgS~DgtIrVWD  484 (630)
                      ..........++.+..++.|..+|..+++..     ..+....  +     .+..+...|  .+..|+.++.++.|..+|
T Consensus       181 ~~~~~~~~~~v~~g~~~g~l~~~d~~tG~~~-----w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d  255 (376)
T 3q7m_A          181 ESAPTTAFGAAVVGGDNGRVSAVLMEQGQMI-----WQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALD  255 (376)
T ss_dssp             CCCCEEETTEEEECCTTTEEEEEETTTCCEE-----EEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEE
T ss_pred             CCCcEEECCEEEEEcCCCEEEEEECCCCcEE-----EEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEE
Confidence            0111112344788888999999999877532     1121110  0     000011111  345677788899999999


Q ss_pred             CcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeC-CCCceEEe
Q 006825          485 VVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSF  563 (630)
Q Consensus       485 l~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL  563 (630)
                      ..+++.+....    .   .....+..  ++..+..+..++.+                       ..++. +|+.+...
T Consensus       256 ~~tG~~~w~~~----~---~~~~~~~~--~~~~l~~~~~~g~l-----------------------~~~d~~tG~~~w~~  303 (376)
T 3q7m_A          256 LRSGQIMWKRE----L---GSVNDFIV--DGNRIYLVDQNDRV-----------------------MALTIDGGVTLWTQ  303 (376)
T ss_dssp             TTTCCEEEEEC----C---CCEEEEEE--ETTEEEEEETTCCE-----------------------EEEETTTCCEEEEE
T ss_pred             CCCCcEEeecc----C---CCCCCceE--ECCEEEEEcCCCeE-----------------------EEEECCCCcEEEee
Confidence            99998775531    1   11223333  24455556667666                       44554 55555554


Q ss_pred             cc-CCCCEEEEEEcCCCeEEEEECCCcEEEEeCCCCcEEEEEe
Q 006825          564 QG-HLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFS  605 (630)
Q Consensus       564 ~G-Hs~~V~sLafSPd~~LaSgS~DgtVrIWDl~tg~~l~t~~  605 (630)
                      .. ....+...... ++.|+.++.+|.|.+||..+|+.+..+.
T Consensus       304 ~~~~~~~~~~~~~~-~~~l~v~~~~g~l~~~d~~tG~~~~~~~  345 (376)
T 3q7m_A          304 SDLLHRLLTSPVLY-NGNLVVGDSEGYLHWINVEDGRFVAQQK  345 (376)
T ss_dssp             CTTTTSCCCCCEEE-TTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             cccCCCcccCCEEE-CCEEEEEeCCCeEEEEECCCCcEEEEEe
Confidence            42 12222223332 3788889999999999999999988876

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=97.89  E-value=0.0011  Score=67.55  Aligned_cols=197  Identities=8%  Similarity=-0.061  Sum_probs=122.0

Q ss_pred             cceeEEEeec----ceEeec-CCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceE
Q 006825          340 PIVQELMRRQ----NVEEGN-KDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSS  414 (630)
Q Consensus       340 ~~V~~Lafs~----~laSgS-~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~V  414 (630)
                      ...+.|+|.+    ++.+|- .+.+++ +.|.+||+.+.++..+-...--.+++.  |.++                   
T Consensus        21 ~f~~Gl~~~~dg~Lyvstg~~~~s~v~-~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~l-------------------   78 (266)
T 2iwa_A           21 AFTQGLVYAENDTLFESTGLYGRSSVR-QVALQTGKVENIHKMDDSYFGEGLTLL--NEKL-------------------   78 (266)
T ss_dssp             CCEEEEEECSTTEEEEEECSTTTCEEE-EEETTTCCEEEEEECCTTCCEEEEEEE--TTEE-------------------
T ss_pred             CCcccEEEeCCCeEEEECCCCCCCEEE-EEECCCCCEEEEEecCCCcceEEEEEe--CCEE-------------------
Confidence            4567888887    233332 357888 999999998887652211111122332  3222                   


Q ss_pred             EEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeee
Q 006825          415 SATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGEL  494 (630)
Q Consensus       415 sa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l  494 (630)
                               .++.-.+++|.++|..+.+.     +.++.--...  .+.+++||+.|+.+..+++|.++|..+.+.+..+
T Consensus        79 ---------yv~t~~~~~v~viD~~t~~v-----~~~i~~g~~~--g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I  142 (266)
T 2iwa_A           79 ---------YQVVWLKNIGFIYDRRTLSN-----IKNFTHQMKD--GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKH  142 (266)
T ss_dssp             ---------EEEETTCSEEEEEETTTTEE-----EEEEECCSSS--CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEE
T ss_pred             ---------EEEEecCCEEEEEECCCCcE-----EEEEECCCCC--eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEE
Confidence                     23445678899999987653     3344211111  2335568887777777899999999998877776


Q ss_pred             ecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeC-CCCceEEeccC-------
Q 006825          495 LEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGH-------  566 (630)
Q Consensus       495 ~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL~GH-------  566 (630)
                      ...........+..+.|. ++.+++....+..|                       .+.|. +++.+.++.-.       
T Consensus       143 ~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V-----------------------~vID~~tg~V~~~I~~~g~~~~~~  198 (266)
T 2iwa_A          143 NVKYNGHRVIRLNELEYI-NGEVWANIWQTDCI-----------------------ARISAKDGTLLGWILLPNLRKKLI  198 (266)
T ss_dssp             ECEETTEECCCEEEEEEE-TTEEEEEETTSSEE-----------------------EEEETTTCCEEEEEECHHHHHHHH
T ss_pred             EECCCCcccccceeEEEE-CCEEEEecCCCCeE-----------------------EEEECCCCcEEEEEECCCcccccc
Confidence            422111112235566776 67666665555666                       55565 67776666421       


Q ss_pred             ------CCCEEEEEEcCC--CeEEEEECCCcEEEEeCCCC
Q 006825          567 ------LDDVLDLSWSKS--QHLLSSSMDKTVRLWHLSSK  598 (630)
Q Consensus       567 ------s~~V~sLafSPd--~~LaSgS~DgtVrIWDl~tg  598 (630)
                            ....+.|+|+|+  .+++++....+|..-++...
T Consensus       199 ~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~  238 (266)
T 2iwa_A          199 DEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV  238 (266)
T ss_dssp             HTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred             cccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence                  134689999998  56778878888888887543

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=97.87  E-value=0.00019  Score=76.52  Aligned_cols=101  Identities=11%  Similarity=-0.001  Sum_probs=69.7

Q ss_pred             ccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCcEEEEEeC
Q 006825          359 FDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGK  438 (630)
Q Consensus       359 tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~  438 (630)
                      ++- +.|..+++.+.++..|+. .  .++|+|||+++..+...                 +..  ..-|..+..|.+||.
T Consensus        47 ~vs-vID~~t~~v~~~i~vG~~-P--~i~~spDg~~lyVan~~-----------------~~r--~~~G~~~~~VsviD~  103 (368)
T 1mda_H           47 ENW-VSCAGCGVTLGHSLGAFL-S--LAVAGHSGSDFALASTS-----------------FAR--SAKGKRTDYVEVFDP  103 (368)
T ss_dssp             EEE-EEETTTTEEEEEEEECTT-C--EEEECTTSSCEEEEEEE-----------------ETT--TTSSSEEEEEEEECT
T ss_pred             eEE-EEECCCCeEEEEEeCCCC-C--ceEECCCCCEEEEEccc-----------------ccc--cccCCCCCEEEEEEC
Confidence            666 889999999999986765 4  69999999877532110                 000  001124678999999


Q ss_pred             CCCcccceeeeeEeccc-------CcCEEEEEEccCCCEEEEEeC--CCcEEE--EECcC
Q 006825          439 SCKDLTALYKCQEIQAH-------NGSIWSIKFSLDGRYLASAGE--DCVIHV--WQVVE  487 (630)
Q Consensus       439 ~~~el~~~~~v~tL~gH-------t~~V~sVaFSpDG~~LASgS~--DgtIrV--WDl~t  487 (630)
                      .+.+.     +.++.-+       -..-..++|+|||++|+.+..  ...|.+  +|+.+
T Consensus       104 ~T~~v-----v~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t  158 (368)
T 1mda_H          104 VTFLP-----IADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD  158 (368)
T ss_dssp             TTCCE-----EEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE
T ss_pred             CCCCE-----EEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh
Confidence            88764     4444322       023457999999999998875  467888  99977

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=97.82  E-value=0.0029  Score=65.60  Aligned_cols=203  Identities=10%  Similarity=-0.024  Sum_probs=112.1

Q ss_pred             ceEeecCCCccEecccCCCCceeEEecCCccCCE-----EEEEEcCCCCeEEeecCCC-------CCccc-----cCCc-
Q 006825          350 NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSI-----RTVASSVTGHKERRSSDER-------DTSSE-----KGGR-  411 (630)
Q Consensus       350 ~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V-----~sVAfSpdG~~lasgS~D~-------dt~s~-----~gh~-  411 (630)
                      .+..++.++.+. .+|..+|+.+.+... .....     .+.+.. ++. +..+..+.       .++..     .... 
T Consensus       145 ~v~v~~~~g~l~-~~d~~tG~~~W~~~~-~~~~~~~~~~~~~~~~-~~~-v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~  220 (376)
T 3q7m_A          145 LVLIHTSNGQLQ-ALNEADGAVKWTVNL-DMPSLSLRGESAPTTA-FGA-AVVGGDNGRVSAVLMEQGQMIWQQRISQAT  220 (376)
T ss_dssp             EEEEECTTSEEE-EEETTTCCEEEEEEC-CC-----CCCCCCEEE-TTE-EEECCTTTEEEEEETTTCCEEEEEECCC--
T ss_pred             EEEEEcCCCeEE-EEECCCCcEEEEEeC-CCCceeecCCCCcEEE-CCE-EEEEcCCCEEEEEECCCCcEEEEEecccCC
Confidence            677788899999 999999998877652 11110     111111 332 33333222       11110     0000 


Q ss_pred             ce--------E-EEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEE
Q 006825          412 RS--------S-SATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHV  482 (630)
Q Consensus       412 ~~--------V-sa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrV  482 (630)
                      ..        + .........++.++.++.|..+|..+++..     ....  ......+..  ++..|+.++.++.|..
T Consensus       221 ~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~-----w~~~--~~~~~~~~~--~~~~l~~~~~~g~l~~  291 (376)
T 3q7m_A          221 GSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIM-----WKRE--LGSVNDFIV--DGNRIYLVDQNDRVMA  291 (376)
T ss_dssp             ---------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEE-----EEEC--CCCEEEEEE--ETTEEEEEETTCCEEE
T ss_pred             CCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEE-----eecc--CCCCCCceE--ECCEEEEEcCCCeEEE
Confidence            00        0 001111234788888999999999877532     1221  223444444  4667888889999999


Q ss_pred             EECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeC-CCCceE
Q 006825          483 WQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPIC  561 (630)
Q Consensus       483 WDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~  561 (630)
                      +|..+++.......    .....+.....  .+..++.+..++.+                       .+++. +|+.+.
T Consensus       292 ~d~~tG~~~w~~~~----~~~~~~~~~~~--~~~~l~v~~~~g~l-----------------------~~~d~~tG~~~~  342 (376)
T 3q7m_A          292 LTIDGGVTLWTQSD----LLHRLLTSPVL--YNGNLVVGDSEGYL-----------------------HWINVEDGRFVA  342 (376)
T ss_dssp             EETTTCCEEEEECT----TTTSCCCCCEE--ETTEEEEECTTSEE-----------------------EEEETTTCCEEE
T ss_pred             EECCCCcEEEeecc----cCCCcccCCEE--ECCEEEEEeCCCeE-----------------------EEEECCCCcEEE
Confidence            99999987655310    11111111111  23456666677877                       56665 677666


Q ss_pred             EeccCCCCEEEEEEcCCCeEEEEECCCcEEEEe
Q 006825          562 SFQGHLDDVLDLSWSKSQHLLSSSMDKTVRLWH  594 (630)
Q Consensus       562 tL~GHs~~V~sLafSPd~~LaSgS~DgtVrIWD  594 (630)
                      .+......+.......++.|+.++.||.|..|+
T Consensus       343 ~~~~~~~~~~~~~~~~~~~l~v~~~~G~l~~~~  375 (376)
T 3q7m_A          343 QQKVDSSGFQTEPVAADGKLLIQAKDGTVYSIT  375 (376)
T ss_dssp             EEECCTTCBCSCCEEETTEEEEEBTTSCEEEEE
T ss_pred             EEecCCCcceeCCEEECCEEEEEeCCCEEEEEe
Confidence            665433333221111247888899999999987

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=97.75  E-value=0.002  Score=65.77  Aligned_cols=183  Identities=6%  Similarity=-0.047  Sum_probs=109.3

Q ss_pred             CccceeEEEeec--ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEE
Q 006825          338 HSPIVQELMRRQ--NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSS  415 (630)
Q Consensus       338 Hs~~V~~Lafs~--~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vs  415 (630)
                      -.++.+.|.|..  ..++.+.++.++ +.|.+||+.++++ ..-  ........++|.+|                    
T Consensus        53 ~~~ftqGL~~~~~~Ly~stG~~g~v~-~iD~~Tgkv~~~~-l~~--~~FgeGit~~g~~L--------------------  108 (268)
T 3nok_A           53 TNAFTQGLVFHQGHFFESTGHQGTLR-QLSLESAQPVWME-RLG--NIFAEGLASDGERL--------------------  108 (268)
T ss_dssp             TTCCEEEEEEETTEEEEEETTTTEEE-ECCSSCSSCSEEE-ECT--TCCEEEEEECSSCE--------------------
T ss_pred             CccccceEEEECCEEEEEcCCCCEEE-EEECCCCcEEeEE-CCC--CcceeEEEEeCCEE--------------------
Confidence            345667788876  466777788899 9999999988766 221  11111122222222                    


Q ss_pred             EeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeee
Q 006825          416 ATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELL  495 (630)
Q Consensus       416 a~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~  495 (630)
                              ....-.++++.+||..+.++     +.++.-- ..=+.++  +|++.|+.+..+.+|.++|..+.+.+..+.
T Consensus       109 --------y~ltw~~~~v~V~D~~Tl~~-----~~ti~~~-~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~  172 (268)
T 3nok_A          109 --------YQLTWTEGLLFTWSGMPPQR-----ERTTRYS-GEGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQ  172 (268)
T ss_dssp             --------EEEESSSCEEEEEETTTTEE-----EEEEECS-SCCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEE
T ss_pred             --------EEEEccCCEEEEEECCcCcE-----EEEEeCC-CceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEE
Confidence                    23344678899999987654     3444321 2224444  578877777778999999999988877764


Q ss_pred             cccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeC-CCCceEEecc---------
Q 006825          496 EKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQG---------  565 (630)
Q Consensus       496 ~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL~G---------  565 (630)
                      ..........+.-+.|. +|++++.......|                       .+.|. +|+.+..+.-         
T Consensus       173 V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~I-----------------------~vIDp~TG~V~~~Idl~~L~~~~~~  228 (268)
T 3nok_A          173 VKLRGQPVELINELECA-NGVIYANIWHSSDV-----------------------LEIDPATGTVVGVIDASALTRAVAG  228 (268)
T ss_dssp             CEETTEECCCEEEEEEE-TTEEEEEETTCSEE-----------------------EEECTTTCBEEEEEECHHHHHHHTT
T ss_pred             eCCCCcccccccccEEe-CCEEEEEECCCCeE-----------------------EEEeCCCCcEEEEEECCCCcccccc
Confidence            22211112234455655 67666555455555                       33444 4554444321         


Q ss_pred             ----CCCCEEEEEEcCC--CeEEEE
Q 006825          566 ----HLDDVLDLSWSKS--QHLLSS  584 (630)
Q Consensus       566 ----Hs~~V~sLafSPd--~~LaSg  584 (630)
                          -.+--+.|||.|+  .+++||
T Consensus       229 ~~~~~~~vlNGIA~dp~~~rlfVTG  253 (268)
T 3nok_A          229 QVTNPEAVLNGIAVEPGSGRIFMTG  253 (268)
T ss_dssp             TCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred             cccCcCCceEEEEEcCCCCEEEEeC
Confidence                1134588999997  556665

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=97.73  E-value=0.0018  Score=65.92  Aligned_cols=185  Identities=10%  Similarity=0.012  Sum_probs=106.9

Q ss_pred             CccceeEEEeec--ceEeecCCC--ccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccccCCcce
Q 006825          338 HSPIVQELMRRQ--NVEEGNKDS--FDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRS  413 (630)
Q Consensus       338 Hs~~V~~Lafs~--~laSgS~D~--tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~  413 (630)
                      ..++.+.|.|..  ..++++.++  .++ +.|.+||+.++++...  .........++|.+|                  
T Consensus        41 ~~~ftqGL~~~~~~LyestG~~g~S~v~-~vD~~Tgkv~~~~~l~--~~~FgeGit~~g~~l------------------   99 (262)
T 3nol_A           41 TKAFTEGFFYRNGYFYESTGLNGRSSIR-KVDIESGKTLQQIELG--KRYFGEGISDWKDKI------------------   99 (262)
T ss_dssp             TTCEEEEEEEETTEEEEEEEETTEEEEE-EECTTTCCEEEEEECC--TTCCEEEEEEETTEE------------------
T ss_pred             CCcccceEEEECCEEEEECCCCCCceEE-EEECCCCcEEEEEecC--CccceeEEEEeCCEE------------------
Confidence            445668888877  345555554  888 9999999998877632  111111122222222                  


Q ss_pred             EEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeee
Q 006825          414 SSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGE  493 (630)
Q Consensus       414 Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~  493 (630)
                                ....-.++++.+||..+.+.     +.++.--. .=+.++  +|++.|+....+.+|.++|..+.+.+..
T Consensus       100 ----------y~ltw~~~~v~v~D~~t~~~-----~~ti~~~~-eG~glt--~dg~~L~~SdGs~~i~~iDp~T~~v~~~  161 (262)
T 3nol_A          100 ----------VGLTWKNGLGFVWNIRNLRQ-----VRSFNYDG-EGWGLT--HNDQYLIMSDGTPVLRFLDPESLTPVRT  161 (262)
T ss_dssp             ----------EEEESSSSEEEEEETTTCCE-----EEEEECSS-CCCCEE--ECSSCEEECCSSSEEEEECTTTCSEEEE
T ss_pred             ----------EEEEeeCCEEEEEECccCcE-----EEEEECCC-CceEEe--cCCCEEEEECCCCeEEEEcCCCCeEEEE
Confidence                      23334578999999987754     34443211 113343  5777666666678899999999888777


Q ss_pred             eecccccCcc-cceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeC-CCCceEEecc------
Q 006825          494 LLEKQEDGHL-NMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQG------  565 (630)
Q Consensus       494 l~~~~~~gh~-~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL~G------  565 (630)
                      +.... .+.. ..+..+.+. +|++++..-.+..|                       .+.|. +|+.+..+.-      
T Consensus       162 I~V~~-~g~~~~~lNELe~~-~G~lyan~w~~~~I-----------------------~vIDp~tG~V~~~Id~~~L~~~  216 (262)
T 3nol_A          162 ITVTA-HGEELPELNELEWV-DGEIFANVWQTNKI-----------------------VRIDPETGKVTGIIDLNGILAE  216 (262)
T ss_dssp             EECEE-TTEECCCEEEEEEE-TTEEEEEETTSSEE-----------------------EEECTTTCBEEEEEECTTGGGG
T ss_pred             EEecc-CCccccccceeEEE-CCEEEEEEccCCeE-----------------------EEEECCCCcEEEEEECCcCccc
Confidence            64221 1211 333445554 67666655455566                       33333 4444444321      


Q ss_pred             -----C-CCCEEEEEEcCC-CeEEEEEC
Q 006825          566 -----H-LDDVLDLSWSKS-QHLLSSSM  586 (630)
Q Consensus       566 -----H-s~~V~sLafSPd-~~LaSgS~  586 (630)
                           . ..--+.|||+|+ +.|...+.
T Consensus       217 ~~~~~~~~~vlNGIA~dp~~~~lfVTGK  244 (262)
T 3nol_A          217 AGPLPSPIDVLNGIAWDKEHHRLFVTGK  244 (262)
T ss_dssp             SCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred             cccccCcCCceEEEEEcCCCCEEEEECC
Confidence                 1 124588999998 55555543

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=97.67  E-value=0.0036  Score=71.57  Aligned_cols=54  Identities=7%  Similarity=0.020  Sum_probs=39.8

Q ss_pred             EEEeC-CCCceEEeccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCCCcEEEEEe
Q 006825          551 TVFAL-SDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS  605 (630)
Q Consensus       551 ~Vwdl-sgk~l~tL~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg~~l~t~~  605 (630)
                      ..|++ +|+.+-++..+. .+....+... ++|+.++.|+.|++||..+|+.+..+.
T Consensus       441 ~A~D~~tG~~~W~~~~~~-~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~  496 (668)
T 1kv9_A          441 LAWDPVKQKAAWKVPYPT-HWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFE  496 (668)
T ss_dssp             EEEETTTTEEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             EEEeCCCCcEEEEccCCC-CCcCceeEeCCCEEEEECCcccchhhhhhcChhheEec
Confidence            56776 787776665433 2333333334 888899999999999999999999886

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=97.60  E-value=0.0045  Score=67.67  Aligned_cols=143  Identities=7%  Similarity=-0.133  Sum_probs=79.3

Q ss_pred             CCCccEecccCCCCceeEEecCC-ccCCEEEEEE--cCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCcE
Q 006825          356 KDSFDLNNNGSSGGGMKSKKKGS-WFKSIRTVAS--SVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVR  432 (630)
Q Consensus       356 ~D~tvr~vWD~~tG~~~~~lk~g-H~~~V~sVAf--SpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~  432 (630)
                      .+.+|. +||+.+++.++++..+ -...-+.|+|  +|+|+++..+..                +..       -..+++
T Consensus       226 ~~d~V~-v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e----------------~~~-------~~Lss~  281 (462)
T 2ece_A          226 YGNRIH-FWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMV----------------VSL-------KDLSSS  281 (462)
T ss_dssp             SCCEEE-EEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEE----------------EET-------TTCCEE
T ss_pred             cCCEEE-EEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEe----------------eec-------cCCCce
Confidence            368888 9999999888888754 2223344555  999886542211                000       002334


Q ss_pred             EEEEeCCCCcccceeeee----Eecc-----------cCcCEEEEEEccCCCEEEEEeC-CCcEEEEECcCC---ceeee
Q 006825          433 VRQYGKSCKDLTALYKCQ----EIQA-----------HNGSIWSIKFSLDGRYLASAGE-DCVIHVWQVVES---ERKGE  493 (630)
Q Consensus       433 VriWd~~~~el~~~~~v~----tL~g-----------Ht~~V~sVaFSpDG~~LASgS~-DgtIrVWDl~tg---~~~~~  493 (630)
                      |.+|....+++.....+.    .+.+           -......|.+|+||++|..+.. .+.|.++|+...   +.+..
T Consensus       282 V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~  361 (462)
T 2ece_A          282 IWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGK  361 (462)
T ss_dssp             EEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEE
T ss_pred             EEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEE
Confidence            444433222221111100    0000           0235789999999998887764 678999998633   33333


Q ss_pred             eecccc---cCc------ccceEEEEECCCCCEEEEee
Q 006825          494 LLEKQE---DGH------LNMLLLANGSPEPTSLSPKH  522 (630)
Q Consensus       494 l~~~~~---~gh------~~~V~svafSpdg~~lasgs  522 (630)
                      +.....   ..|      ...-..++++|||++|+++.
T Consensus       362 I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN  399 (462)
T 2ece_A          362 VKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN  399 (462)
T ss_dssp             EECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred             EEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence            321100   001      01246789999999888874

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=97.57  E-value=0.036  Score=54.60  Aligned_cols=157  Identities=11%  Similarity=0.043  Sum_probs=90.8

Q ss_pred             EEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCC-EEEEEeCCCcEEEEECcCCceeeeeecccccCcc
Q 006825          425 FHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGR-YLASAGEDCVIHVWQVVESERKGELLEKQEDGHL  503 (630)
Q Consensus       425 ~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~-~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~  503 (630)
                      ++-...++|..++......     ...+.........|++++++. ++++-...+.|.++++.... ...+.    ....
T Consensus        52 ~~d~~~~~I~~~~~~g~~~-----~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~-~~~~~----~~~~  121 (267)
T 1npe_A           52 WTDISEPSIGRASLHGGEP-----TTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQ-RRVLF----DTGL  121 (267)
T ss_dssp             EEETTTTEEEEEESSSCCC-----EEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEE----CSSC
T ss_pred             EEECCCCEEEEEecCCCCc-----EEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCC-EEEEE----ECCC
Confidence            3444567788888765532     112222334678999999755 45555567889999986432 22221    1112


Q ss_pred             cceEEEEECCCCCEEEEeeC---CCeeeeecccccccccccccCccccccEEEeCCCCceEEec-cCCCCEEEEEEcCC-
Q 006825          504 NMLLLANGSPEPTSLSPKHL---DNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQ-GHLDDVLDLSWSKS-  578 (630)
Q Consensus       504 ~~V~svafSpdg~~lasgs~---Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL~-GHs~~V~sLafSPd-  578 (630)
                      .....++++|++..|..+..   .+.|                       ..+++.++....+. ........++|+|+ 
T Consensus       122 ~~P~~i~vd~~~g~lyv~~~~~~~~~I-----------------------~~~~~dg~~~~~~~~~~~~~P~gia~d~~~  178 (267)
T 1npe_A          122 VNPRGIVTDPVRGNLYWTDWNRDNPKI-----------------------ETSHMDGTNRRILAQDNLGLPNGLTFDAFS  178 (267)
T ss_dssp             SSEEEEEEETTTTEEEEEECCSSSCEE-----------------------EEEETTSCCCEEEECTTCSCEEEEEEETTT
T ss_pred             CCccEEEEeeCCCEEEEEECCCCCcEE-----------------------EEEecCCCCcEEEEECCCCCCcEEEEcCCC
Confidence            45678999996544443322   2344                       34444444433332 22345789999997 


Q ss_pred             CeE-EEEECCCcEEEEeCCCCcEEEEEecCCceEEEE
Q 006825          579 QHL-LSSSMDKTVRLWHLSSKTCLKIFSHSDYDISLV  614 (630)
Q Consensus       579 ~~L-aSgS~DgtVrIWDl~tg~~l~t~~H~~~V~sVa  614 (630)
                      ++| ++-...+.|.++|+........+........|+
T Consensus       179 ~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~P~gi~  215 (267)
T 1npe_A          179 SQLCWVDAGTHRAECLNPAQPGRRKVLEGLQYPFAVT  215 (267)
T ss_dssp             TEEEEEETTTTEEEEEETTEEEEEEEEECCCSEEEEE
T ss_pred             CEEEEEECCCCEEEEEecCCCceEEEecCCCCceEEE
Confidence            554 566667899999997654433333333445555

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=97.55  E-value=0.0077  Score=65.86  Aligned_cols=231  Identities=13%  Similarity=0.012  Sum_probs=134.2

Q ss_pred             ceEeecCCCccEecccCCCC----ceeEEe-------cCCccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEee
Q 006825          350 NVEEGNKDSFDLNNNGSSGG----GMKSKK-------KGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATD  418 (630)
Q Consensus       350 ~laSgS~D~tvr~vWD~~tG----~~~~~l-------k~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~  418 (630)
                      .+++|-.+.+|. +.|+++.    +..++.       +.| ...=..+.++|+| .+++...+                 
T Consensus        98 l~v~~l~s~~I~-viD~~t~p~~p~~~k~ie~~~~~~~~g-~s~Ph~~~~~pdG-i~Vs~~g~-----------------  157 (462)
T 2ece_A           98 LIVPGLRSSRIY-IIDTKPNPREPKIIKVIEPEEVKKVSG-YSRLHTVHCGPDA-IYISALGN-----------------  157 (462)
T ss_dssp             EEEEBTTTCCEE-EEECCSCTTSCEEEEEECHHHHHHHHC-EEEEEEEEECSSC-EEEEEEEE-----------------
T ss_pred             EEEccCCCCeEE-EEECCCCCCCceeeeeechhhcccccC-CCcccceeECCCe-EEEEcCCC-----------------
Confidence            577888889999 9998765    344444       111 1123357888998 44432111                 


Q ss_pred             cCCCeEEEecCCcEEEEEeCCCCcccceeeeeEec--ccC-cCEEEEEEccCCCEEEEEe-------------------C
Q 006825          419 DSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQ--AHN-GSIWSIKFSLDGRYLASAG-------------------E  476 (630)
Q Consensus       419 ~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~--gHt-~~V~sVaFSpDG~~LASgS-------------------~  476 (630)
                       .     .|...+.|.++|..+.+.     +.++.  ++. ..-+.+-|+|+++.++|..                   .
T Consensus       158 -~-----~g~~~g~v~vlD~~T~~v-----~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~  226 (462)
T 2ece_A          158 -E-----EGEGPGGILMLDHYSFEP-----LGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRY  226 (462)
T ss_dssp             -T-----TSCSCCEEEEECTTTCCE-----EEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHS
T ss_pred             -c-----CCCCCCeEEEEECCCCeE-----EEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhcc
Confidence             0     123356788898877653     33343  122 2345688999999999884                   3


Q ss_pred             CCcEEEEECcCCceeeeeecccccC-cccceEEEEE--CCCCCEEEEeeC------CCeeeeecccccccccccccCccc
Q 006825          477 DCVIHVWQVVESERKGELLEKQEDG-HLNMLLLANG--SPEPTSLSPKHL------DNHLEKKRRGRSINRKSLSLDHMV  547 (630)
Q Consensus       477 DgtIrVWDl~tg~~~~~l~~~~~~g-h~~~V~svaf--Spdg~~lasgs~------Dg~I~i~~~~~~~~~~s~s~d~~i  547 (630)
                      +.+|.+||+.+++.+.++.    .+ .......+.|  +|+++++..+..      +++|.++....          +..
T Consensus       227 ~d~V~v~D~~~~k~~~tI~----vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~----------g~~  292 (462)
T 2ece_A          227 GNRIHFWDLRKRKRIHSLT----LGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYED----------GKW  292 (462)
T ss_dssp             CCEEEEEETTTTEEEEEEE----SCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEET----------TEE
T ss_pred             CCEEEEEECCCCcEeeEEe----cCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecC----------Cce
Confidence            7899999999887666653    22 1123334444  999998887664      44554333211          000


Q ss_pred             cccEEEeCCCC-ceEEe-------ccCCCCEEEEEEcCC-CeEEEEE-CCCcEEEEeCC---CCcEEEEEe-cCC-----
Q 006825          548 VPETVFALSDK-PICSF-------QGHLDDVLDLSWSKS-QHLLSSS-MDKTVRLWHLS---SKTCLKIFS-HSD-----  608 (630)
Q Consensus       548 ~~~~Vwdlsgk-~l~tL-------~GHs~~V~sLafSPd-~~LaSgS-~DgtVrIWDl~---tg~~l~t~~-H~~-----  608 (630)
                      ....+.++... ...++       .+-......|.++|| ++|..+. ..+.|.++|+.   +.+.+..+. ...     
T Consensus       293 ~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~  372 (462)
T 2ece_A          293 NAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRAD  372 (462)
T ss_dssp             EEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBC
T ss_pred             eEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeecccc
Confidence            11122222110 00001       111235688999999 6665444 57899999986   345666665 311     


Q ss_pred             ---------ceEEEE-cCCCcEEEEec
Q 006825          609 ---------YDISLV-DRLMLRFAYGA  625 (630)
Q Consensus       609 ---------~V~sVa-s~~~~~lAsgs  625 (630)
                               .-..++ ++++.++..+.
T Consensus       373 ~~~G~~~~ggPr~~~lSpDGk~LyVaN  399 (462)
T 2ece_A          373 HPAGHKLTGAPQMLEISRDGRRVYVTN  399 (462)
T ss_dssp             CTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred             ccccccCCCCCCEEEEcCCCCEEEEEc
Confidence                     246677 88887776654

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=97.54  E-value=0.0037  Score=71.48  Aligned_cols=73  Identities=10%  Similarity=-0.068  Sum_probs=47.6

Q ss_pred             EEEEEccCCCEEEEEeCCCc-------------------EEEEECcCCceeeeeecccccCcc-------cceEEEEECC
Q 006825          460 WSIKFSLDGRYLASAGEDCV-------------------IHVWQVVESERKGELLEKQEDGHL-------NMLLLANGSP  513 (630)
Q Consensus       460 ~sVaFSpDG~~LASgS~Dgt-------------------IrVWDl~tg~~~~~l~~~~~~gh~-------~~V~svafSp  513 (630)
                      ..+++.|+..+++.+..++.                   |..+|+.+|+.+..+..   ..|.       .......+..
T Consensus       233 ~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~---~~~~~wd~~~~~~~~~~d~~~  309 (668)
T 1kv9_A          233 DSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQV---TPGDSWDFTATQQITLAELNI  309 (668)
T ss_dssp             SCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEES---STTCCSCCCCCSCEEEEEEEE
T ss_pred             cceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeec---CCCccccccCCCCcEEEEecc
Confidence            35788898888888877763                   99999999998766421   1121       2222222233


Q ss_pred             CCC---EEEEeeCCCeeeeeccccc
Q 006825          514 EPT---SLSPKHLDNHLEKKRRGRS  535 (630)
Q Consensus       514 dg~---~lasgs~Dg~I~i~~~~~~  535 (630)
                      +|+   +++.+..++.+...+....
T Consensus       310 ~G~~~~~v~~~~~~G~l~~lD~~tG  334 (668)
T 1kv9_A          310 DGKPRKVLMQAPKNGFFYVLDRTNG  334 (668)
T ss_dssp             TTEEEEEEEECCTTSEEEEEETTTC
T ss_pred             CCcEEEEEEEECCCCEEEEEECCCC
Confidence            554   6777888888877765543

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=97.52  E-value=0.24  Score=57.03  Aligned_cols=258  Identities=10%  Similarity=0.026  Sum_probs=150.7

Q ss_pred             ccceeEEEeec--ceEeecCCCccEecccCCCCceeEEecCC-------ccCCEEEEEEcCCCCeEEeecCCC------C
Q 006825          339 SPIVQELMRRQ--NVEEGNKDSFDLNNNGSSGGGMKSKKKGS-------WFKSIRTVASSVTGHKERRSSDER------D  403 (630)
Q Consensus       339 s~~V~~Lafs~--~laSgS~D~tvr~vWD~~tG~~~~~lk~g-------H~~~V~sVAfSpdG~~lasgS~D~------d  403 (630)
                      ...|.+|...+  .|--|+.+..+. .||..+++...... .       ....|++++..++|.+.+.... +      .
T Consensus       214 ~~~i~~i~~d~~g~lwigt~~~Gl~-~~~~~~~~~~~~~~-~~~~~~~l~~~~i~~i~~d~~g~lWigt~~-Gl~~~~~~  290 (795)
T 4a2l_A          214 TKQIQAILQQSPTRIWVATEGAGLF-LINPKTKEIKNYLH-SPSNPKSISSNYIRSLAMDSQNRLWIGTFN-DLNIYHEG  290 (795)
T ss_dssp             CCCEEEEEEEETTEEEEEEBSSCEE-EEETTTTEEEEECC-CTTCTTSCSCSBEEEEEECTTSCEEEEESS-CEEEEETT
T ss_pred             CCeeEEEEEcCCCCEEEEECCCCeE-EEeCCCCeEEEeec-CCCCccccCCCeEEEEEEcCCCCEEEEeCC-hhheEcCC
Confidence            45678877655  455566555677 78887776544322 2       2357999999999886543322 3      1


Q ss_pred             Ccc-----------ccCCcceEEEeecCCCe-EEEecCCcEEEEEeCCCCcccceeeeeEecc-cCcCEEEEEEccCCCE
Q 006825          404 TSS-----------EKGGRRSSSATDDSQDV-SFHGQERVRVRQYGKSCKDLTALYKCQEIQA-HNGSIWSIKFSLDGRY  470 (630)
Q Consensus       404 t~s-----------~~gh~~~Vsa~~~s~d~-l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~g-Ht~~V~sVaFSpDG~~  470 (630)
                      +..           ..-....|.++....++ ++.|..++-|..|+.....+........-.+ ....|.+|...++|++
T Consensus       291 ~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~l  370 (795)
T 4a2l_A          291 TDSFASYSSNPVENGSLSQRSVRSIFMDSQGGMWLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKNL  370 (795)
T ss_dssp             TTEEEEECCCTTSTTSCSSSCEEEEEECTTSCEEEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTSCE
T ss_pred             CCeEEEEecCCCCCCCCCCCcEEEEEEeCCcCEEEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCCCCE
Confidence            111           00123457777666666 8999988888888875543321110000000 2456999999999985


Q ss_pred             EEEEeCCCcEEEEECcCCceeeeeecccc---cCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccc
Q 006825          471 LASAGEDCVIHVWQVVESERKGELLEKQE---DGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMV  547 (630)
Q Consensus       471 LASgS~DgtIrVWDl~tg~~~~~l~~~~~---~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i  547 (630)
                      .+ |..++-|..|+..++...........   .-....|.++...+++.+|..|..++-+                    
T Consensus       371 Wi-Gt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl--------------------  429 (795)
T 4a2l_A          371 WI-GTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGL--------------------  429 (795)
T ss_dssp             EE-EESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEE--------------------
T ss_pred             EE-EECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCce--------------------
Confidence            44 77777799999877654322110000   0123568889888888834445454445                    


Q ss_pred             cccEEEeCCCCceEEec-----cCCCCEEEEEEcCCCeEEEEECCCcEEEEeCCCCcEEEEEe-------cCCceEEEE-
Q 006825          548 VPETVFALSDKPICSFQ-----GHLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFS-------HSDYDISLV-  614 (630)
Q Consensus       548 ~~~~Vwdlsgk~l~tL~-----GHs~~V~sLafSPd~~LaSgS~DgtVrIWDl~tg~~l~t~~-------H~~~V~sVa-  614 (630)
                         ..++.....+..+.     -+...|.++...+++.|..|.. +-|.+||..+++......       ....|.++. 
T Consensus       430 ---~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~  505 (795)
T 4a2l_A          430 ---SILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGTL-SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFR  505 (795)
T ss_dssp             ---EEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEES-SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEE
T ss_pred             ---eEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEec-CceeEEeCCCCeEEEccccccccccCCceEEEEEE
Confidence               33443222222222     1345789999887755555555 458899998876543221       236788888 


Q ss_pred             cCCC-cEEEEe
Q 006825          615 DRLM-LRFAYG  624 (630)
Q Consensus       615 s~~~-~~lAsg  624 (630)
                      ++.+ +++++.
T Consensus       506 d~~g~lWigt~  516 (795)
T 4a2l_A          506 DSHKRLWIGGE  516 (795)
T ss_dssp             CTTCCEEEEES
T ss_pred             CCCCCEEEEeC
Confidence            4444 455543

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=97.50  E-value=0.25  Score=56.82  Aligned_cols=255  Identities=7%  Similarity=-0.033  Sum_probs=154.0

Q ss_pred             ccceeEEEeec--ceEeecCCCccEecccCCCCceeEEecC------CccCCEEEEEEcCCCCeEEeecCCC------CC
Q 006825          339 SPIVQELMRRQ--NVEEGNKDSFDLNNNGSSGGGMKSKKKG------SWFKSIRTVASSVTGHKERRSSDER------DT  404 (630)
Q Consensus       339 s~~V~~Lafs~--~laSgS~D~tvr~vWD~~tG~~~~~lk~------gH~~~V~sVAfSpdG~~lasgS~D~------dt  404 (630)
                      ...|.+|+..+  .|.-|+.. .+. +||..++........      -....|.++...++|.+-+.....+      ..
T Consensus       262 ~~~i~~i~~d~~g~lWigt~~-Gl~-~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWigt~~~Gl~~~~~~~  339 (795)
T 4a2l_A          262 SNYIRSLAMDSQNRLWIGTFN-DLN-IYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGGMWLGTYFGGLNYYHPIR  339 (795)
T ss_dssp             CSBEEEEEECTTSCEEEEESS-CEE-EEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSCEEEEESSSCEEEECGGG
T ss_pred             CCeEEEEEEcCCCCEEEEeCC-hhh-eEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcCEEEEECCCCeEEeCCCc
Confidence            35688888865  55556655 677 888877765443210      1236799999999988654332222      11


Q ss_pred             cc---cc------C-CcceEEEeecCCCe-EEEecCCcEEEEEeCCCCcccceeeeeEe---cccCcCEEEEEEccCCCE
Q 006825          405 SS---EK------G-GRRSSSATDDSQDV-SFHGQERVRVRQYGKSCKDLTALYKCQEI---QAHNGSIWSIKFSLDGRY  470 (630)
Q Consensus       405 ~s---~~------g-h~~~Vsa~~~s~d~-l~Sgs~Dg~VriWd~~~~el~~~~~v~tL---~gHt~~V~sVaFSpDG~~  470 (630)
                      ..   ..      + ....|.++....++ ++.|..++-|..|+..++.+........-   .-....|.++...++|++
T Consensus       340 ~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~  419 (795)
T 4a2l_A          340 NRFKNIRNIPYKNSLSDNVVSCIVEDKDKNLWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSL  419 (795)
T ss_dssp             GSSEEECCCTTSSSCSCSSEEEEEECTTSCEEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTE
T ss_pred             ccceEEcCCCCCCCCCCCeeEEEEECCCCCEEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCE
Confidence            11   00      0 23457777666666 99999887889999876643221100000   012367999999999985


Q ss_pred             EEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCcccccc
Q 006825          471 LASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPE  550 (630)
Q Consensus       471 LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~  550 (630)
                      |..|..++-|.+||..+++...... .........|.++...+++.+.+... .| +                       
T Consensus       420 lWigt~~~Gl~~~d~~~~~~~~~~~-~~~~l~~~~v~~i~~d~~g~lwigt~-~G-l-----------------------  473 (795)
T 4a2l_A          420 VYIGTHAGGLSILHRNSGQVENFNQ-RNSQLVNENVYAILPDGEGNLWLGTL-SA-L-----------------------  473 (795)
T ss_dssp             EEEEETTTEEEEEETTTCCEEEECT-TTSCCSCSCEEEEEECSSSCEEEEES-SC-E-----------------------
T ss_pred             EEEEeCcCceeEEeCCCCcEEEeec-CCCCcCCCeeEEEEECCCCCEEEEec-Cc-e-----------------------
Confidence            6667777789999998765433211 00012345788999888888776653 44 3                       


Q ss_pred             EEEeCCCCceEEec-------cCCCCEEEEEEcCCCeEEEEECCCcEEEEeCCCCcEEEEEe--------cCCceEEEE-
Q 006825          551 TVFALSDKPICSFQ-------GHLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFS--------HSDYDISLV-  614 (630)
Q Consensus       551 ~Vwdlsgk~l~tL~-------GHs~~V~sLafSPd~~LaSgS~DgtVrIWDl~tg~~l~t~~--------H~~~V~sVa-  614 (630)
                      .+|+........+.       -+...|.++...+++.|..|.. +-|.+||..+++.  .+.        ....|.+|. 
T Consensus       474 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~-~Gl~~~~~~~~~~--~~~~~~~~~~l~~~~i~~i~~  550 (795)
T 4a2l_A          474 VRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE-EGLSVFKQEGLDI--QKASILPVSNVTKLFTNCIYE  550 (795)
T ss_dssp             EEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEES-SCEEEEEEETTEE--EECCCSCSCGGGGSCEEEEEE
T ss_pred             eEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEEeC-CceEEEeCCCCeE--EEecCCCCCCCCCCeeEEEEE
Confidence            23333222222221       1235789999888855555555 5688899888776  332        345788988 


Q ss_pred             cCCC-cEEEEe
Q 006825          615 DRLM-LRFAYG  624 (630)
Q Consensus       615 s~~~-~~lAsg  624 (630)
                      ++.+ +++++.
T Consensus       551 d~~g~lWigT~  561 (795)
T 4a2l_A          551 ASNGIIWVGTR  561 (795)
T ss_dssp             CTTSCEEEEES
T ss_pred             CCCCCEEEEeC
Confidence            5554 455554

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=97.49  E-value=0.013  Score=58.98  Aligned_cols=149  Identities=10%  Similarity=-0.016  Sum_probs=85.8

Q ss_pred             ccceeEEEeec--ceEeecCC--CccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceE
Q 006825          339 SPIVQELMRRQ--NVEEGNKD--SFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSS  414 (630)
Q Consensus       339 s~~V~~Lafs~--~laSgS~D--~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~V  414 (630)
                      ...++.|.|.+  ..++.+.+  ..++ ..|.++|+.+++....-  ........++|.+|                   
T Consensus        20 ~~ftqGL~~~~~~LyestG~~g~S~v~-~vD~~tgkv~~~~~l~~--~~fgeGi~~~~~~l-------------------   77 (243)
T 3mbr_X           20 TAFTEGLFYLRGHLYESTGETGRSSVR-KVDLETGRILQRAEVPP--PYFGAGIVAWRDRL-------------------   77 (243)
T ss_dssp             TCCEEEEEEETTEEEEEECCTTSCEEE-EEETTTCCEEEEEECCT--TCCEEEEEEETTEE-------------------
T ss_pred             ccccccEEEECCEEEEECCCCCCceEE-EEECCCCCEEEEEeCCC--CcceeEEEEeCCEE-------------------
Confidence            35688899988  34454554  4888 99999999988776211  11111112222222                   


Q ss_pred             EEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeee
Q 006825          415 SATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGEL  494 (630)
Q Consensus       415 sa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l  494 (630)
                               ....-.++++.+||..+.++     +.++.--. .=+.++  +|++.|+.+..+.+|.++|..+.+.+..+
T Consensus        78 ---------y~ltw~~~~v~v~D~~tl~~-----~~ti~~~~-~Gwglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I  140 (243)
T 3mbr_X           78 ---------IQLTWRNHEGFVYDLATLTP-----RARFRYPG-EGWALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSI  140 (243)
T ss_dssp             ---------EEEESSSSEEEEEETTTTEE-----EEEEECSS-CCCEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEE
T ss_pred             ---------EEEEeeCCEEEEEECCcCcE-----EEEEeCCC-CceEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEE
Confidence                     23345678899999987653     34443222 224454  46766666666889999999998877775


Q ss_pred             ecccccCcccceEEEEECCCCCEEEEeeCCCee
Q 006825          495 LEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHL  527 (630)
Q Consensus       495 ~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I  527 (630)
                      ...........+.-+.+. +|++++.......|
T Consensus       141 ~V~~~g~~~~~lNeLe~~-~G~lyanvw~s~~I  172 (243)
T 3mbr_X          141 KVTAGGRPLDNLNELEWV-NGELLANVWLTSRI  172 (243)
T ss_dssp             ECEETTEECCCEEEEEEE-TTEEEEEETTTTEE
T ss_pred             EEccCCcccccceeeEEe-CCEEEEEECCCCeE
Confidence            422100011233444444 56666555445555

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=97.39  E-value=0.028  Score=63.41  Aligned_cols=236  Identities=9%  Similarity=-0.044  Sum_probs=131.8

Q ss_pred             eEeecCCCccEecccCCCCceeEEecCCccCCEEEEEE-c-CCCCeEEeecCCCCCccccCCcceEEEeecCCCe--EE-
Q 006825          351 VEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVAS-S-VTGHKERRSSDERDTSSEKGGRRSSSATDDSQDV--SF-  425 (630)
Q Consensus       351 laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAf-S-pdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~--l~-  425 (630)
                      .++...+..|. +=|+.+.++...+...-......+++ + |+++++..++...              +...+++  |. 
T Consensus       105 fVnd~~~~rVa-vIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~--------------~p~~~dg~~l~~  169 (595)
T 1fwx_A          105 FMNDKANTRVA-RVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDE--------------TPLVNDGTNMED  169 (595)
T ss_dssp             EEEETTTTEEE-EEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSC--------------EESSCSSSSTTC
T ss_pred             EEEcCCCCEEE-EEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccc--------------cccCCCCccccc
Confidence            44555566677 78999999888554333456778898 5 9999887654332              0111111  11 


Q ss_pred             EecCCcEEEEEeCCCCcccceeeeeEec-ccCcCEEEEEEccCCCEEEEEeCCC--------------------------
Q 006825          426 HGQERVRVRQYGKSCKDLTALYKCQEIQ-AHNGSIWSIKFSLDGRYLASAGEDC--------------------------  478 (630)
Q Consensus       426 Sgs~Dg~VriWd~~~~el~~~~~v~tL~-gHt~~V~sVaFSpDG~~LASgS~Dg--------------------------  478 (630)
                      ..-.++.+-+.|..+.+.     +.++. +-  .-.-++++|||+++++.+.+.                          
T Consensus       170 ~~~~~~~vtvID~~t~~v-----~~qI~Vgg--~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~  242 (595)
T 1fwx_A          170 VANYVNVFTAVDADKWEV-----AWQVLVSG--NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIE  242 (595)
T ss_dssp             GGGEEEEEEEEETTTTEE-----EEEEEESS--CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHH
T ss_pred             ccccCceEEEEECCCCeE-----EEEEEeCC--CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeecccee
Confidence            122345567777766543     22221 11  234577888999888888653                          


Q ss_pred             ------------cEEEEECcC--Cce-eeeeecccccCcccceEEEEECCCCCEEEEee-CCCeeeeecccccccccccc
Q 006825          479 ------------VIHVWQVVE--SER-KGELLEKQEDGHLNMLLLANGSPEPTSLSPKH-LDNHLEKKRRGRSINRKSLS  542 (630)
Q Consensus       479 ------------tIrVWDl~t--g~~-~~~l~~~~~~gh~~~V~svafSpdg~~lasgs-~Dg~I~i~~~~~~~~~~s~s  542 (630)
                                  .|.|.|..+  +.. +..+.      .......+.++|||++++.+. .+.+|.+.+..+.....   
T Consensus       243 ~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ip------vg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~---  313 (595)
T 1fwx_A          243 KAIAAGDYQELNGVKVVDGRKEASSLFTRYIP------IANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVF---  313 (595)
T ss_dssp             HHHHHTCSEEETTEEEEECSGGGCCSSEEEEE------EESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHH---
T ss_pred             EeccCCCeeEECcEEEEeCcccCCceeEEEEe------cCCCceEEEEcCCCCEEEEeCCCCCeEEEEECccccccc---
Confidence                        355555544  222 22211      012334789999999877654 45566444433211000   


Q ss_pred             cCccccccEEEeCCCCceEEeccCCCCEEEEEEcCCC-eEEEEECCCcEEEEeCCC----------CcEEEEEe-cCCce
Q 006825          543 LDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKSQ-HLLSSSMDKTVRLWHLSS----------KTCLKIFS-HSDYD  610 (630)
Q Consensus       543 ~d~~i~~~~Vwdlsgk~l~tL~GHs~~V~sLafSPd~-~LaSgS~DgtVrIWDl~t----------g~~l~t~~-H~~~V  610 (630)
                       ++.+      +.....+.++. -......++|+|++ .+++.-.|++|-+||+.+          .+.+.++. |-.+-
T Consensus       314 -~~~l------~~~~~v~~~v~-vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpG  385 (595)
T 1fwx_A          314 -YENA------DPRSAVVAEPE-LGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPG  385 (595)
T ss_dssp             -HSCC------CGGGGEEECCB-CCSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEE
T ss_pred             -cccc------CcccceEEEcC-CCCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccc
Confidence             0000      00011222222 22346889999995 445667799999999987          56777777 65432


Q ss_pred             -EEEE-----cCCCcEEEEec
Q 006825          611 -ISLV-----DRLMLRFAYGA  625 (630)
Q Consensus       611 -~sVa-----s~~~~~lAsgs  625 (630)
                       .+..     .+++.++.+..
T Consensus       386 h~~~~~g~t~~~DGk~l~~~N  406 (595)
T 1fwx_A          386 HLKTVMGETLDATNDWLVCLS  406 (595)
T ss_dssp             EEEETTTTSTTCCSSEEEEEE
T ss_pred             cceeccceEeCCCCCEEEEcC
Confidence             2221     78888887663

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=97.36  E-value=0.037  Score=56.22  Aligned_cols=219  Identities=9%  Similarity=-0.023  Sum_probs=118.4

Q ss_pred             eEEEeec---ceEeecCCCccEecccCCCCceeEEe-cC-----------------CccCCEEEEEEcC-CCCeEEeecC
Q 006825          343 QELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKK-KG-----------------SWFKSIRTVASSV-TGHKERRSSD  400 (630)
Q Consensus       343 ~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~l-k~-----------------gH~~~V~sVAfSp-dG~~lasgS~  400 (630)
                      ..+++.+   .+.++..++.+. .|+..+++...-. ..                 ........+++.+ +|.++++...
T Consensus        22 ~~i~~d~~g~~l~v~~~~~~i~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d~~  100 (322)
T 2fp8_A           22 NSFTFDSTNKGFYTSVQDGRVI-KYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVDCY  100 (322)
T ss_dssp             CCEECCTTCSSEEEECTTSEEE-EECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEETT
T ss_pred             eEEEEcCCCCEEEEEcCCCeEE-EECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEECC
Confidence            3445544   266667777787 7887665433211 00                 0123578899997 7776665332


Q ss_pred             CC------CCcc---c----cC-CcceEEEeecCC-Ce-EEEec------------------CCcEEEEEeCCCCcccce
Q 006825          401 ER------DTSS---E----KG-GRRSSSATDDSQ-DV-SFHGQ------------------ERVRVRQYGKSCKDLTAL  446 (630)
Q Consensus       401 D~------dt~s---~----~g-h~~~Vsa~~~s~-d~-l~Sgs------------------~Dg~VriWd~~~~el~~~  446 (630)
                      ..      ++..   +    .+ .......+.+.+ ++ ++.+.                  ..+.|..|+..+++..  
T Consensus       101 ~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~--  178 (322)
T 2fp8_A          101 YHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETT--  178 (322)
T ss_dssp             TEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEE--
T ss_pred             CCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEEE--
Confidence            21      1110   0    00 011233444555 44 33322                  1366777776554321  


Q ss_pred             eeeeEecccCcCEEEEEEccCCCEEEEE-eCCCcEEEEECcCCc--eeeeeecccccCcccceEEEEECCCCCEEEEeeC
Q 006825          447 YKCQEIQAHNGSIWSIKFSLDGRYLASA-GEDCVIHVWQVVESE--RKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHL  523 (630)
Q Consensus       447 ~~v~tL~gHt~~V~sVaFSpDG~~LASg-S~DgtIrVWDl~tg~--~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~  523 (630)
                          .+.........|+|+|+|++|..+ ...+.|.+|++....  ....+.  ...   + ...+++.++|.++++...
T Consensus       179 ----~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~--~~~---g-P~gi~~d~~G~l~va~~~  248 (322)
T 2fp8_A          179 ----LLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLV--KIP---N-PGNIKRNADGHFWVSSSE  248 (322)
T ss_dssp             ----EEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEE--ECS---S-EEEEEECTTSCEEEEEEE
T ss_pred             ----EeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEE--eCC---C-CCCeEECCCCCEEEEecC
Confidence                111112234579999999865544 566889999987532  111111  011   2 567889999987777643


Q ss_pred             ----------CCeeeeecccccccccccccCccccccEEEeCCCCceEEeccC----CCCEEEEEEcCCCeEEEEECCCc
Q 006825          524 ----------DNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGH----LDDVLDLSWSKSQHLLSSSMDKT  589 (630)
Q Consensus       524 ----------Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL~GH----s~~V~sLafSPd~~LaSgS~Dgt  589 (630)
                                .+.|                       ..++..++.+..+...    -..++.+++....++++....+.
T Consensus       249 ~~~~~~~~~~~~~v-----------------------~~~d~~G~~~~~~~~~~g~~~~~~~~~~~~~g~L~v~~~~~~~  305 (322)
T 2fp8_A          249 ELDGNMHGRVDPKG-----------------------IKFDEFGNILEVIPLPPPFAGEHFEQIQEHDGLLYIGTLFHGS  305 (322)
T ss_dssp             ETTSSTTSCEEEEE-----------------------EEECTTSCEEEEEECCTTTTTSCCCEEEEETTEEEEECSSCSE
T ss_pred             cccccccCCCccEE-----------------------EEECCCCCEEEEEECCCCCccccceEEEEeCCEEEEeecCCCc
Confidence                      1222                       4455566666666543    23567777743255566667888


Q ss_pred             EEEEeCCC
Q 006825          590 VRLWHLSS  597 (630)
Q Consensus       590 VrIWDl~t  597 (630)
                      |..+++..
T Consensus       306 i~~~~~~~  313 (322)
T 2fp8_A          306 VGILVYDK  313 (322)
T ss_dssp             EEEEEC--
T ss_pred             eEEEeccc
Confidence            98888764

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=97.34  E-value=0.012  Score=59.81  Aligned_cols=175  Identities=10%  Similarity=-0.011  Sum_probs=102.4

Q ss_pred             ceeEEEEcCCCceEeeecceee-ecCccceeEEEeec-ce-EeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcC
Q 006825          314 TWKKVKEVGTGRQLTIEEFEMC-VGHSPIVQELMRRQ-NV-EEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSV  390 (630)
Q Consensus       314 ~~~~l~dv~TG~~lt~eef~~l-~GHs~~V~~Lafs~-~l-aSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSp  390 (630)
                      ...+..|+.||+.+     .++ .+.......+++.. .| ++.-.++++. ++|.++++.+.++..+ ...  ...+++
T Consensus        44 s~v~~iD~~tg~v~-----~~i~l~~~~fgeGi~~~g~~lyv~t~~~~~v~-viD~~t~~v~~~i~~g-~~~--g~glt~  114 (266)
T 2iwa_A           44 SSVRQVALQTGKVE-----NIHKMDDSYFGEGLTLLNEKLYQVVWLKNIGF-IYDRRTLSNIKNFTHQ-MKD--GWGLAT  114 (266)
T ss_dssp             CEEEEEETTTCCEE-----EEEECCTTCCEEEEEEETTEEEEEETTCSEEE-EEETTTTEEEEEEECC-SSS--CCEEEE
T ss_pred             CEEEEEECCCCCEE-----EEEecCCCcceEEEEEeCCEEEEEEecCCEEE-EEECCCCcEEEEEECC-CCC--eEEEEE
Confidence            34555666666665     221 12223334455554 23 3334467777 9999999999888644 111  134555


Q ss_pred             CCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCE
Q 006825          391 TGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRY  470 (630)
Q Consensus       391 dG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~  470 (630)
                      ||+++.                             ....+++|.++|..+.+......+..-...-..++.+.|. +|++
T Consensus       115 Dg~~l~-----------------------------vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~l  164 (266)
T 2iwa_A          115 DGKILY-----------------------------GSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEV  164 (266)
T ss_dssp             CSSSEE-----------------------------EECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEE
T ss_pred             CCCEEE-----------------------------EECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEE
Confidence            665443                             2234678999998776532211111100112246788888 7876


Q ss_pred             EEEEeCCCcEEEEECcCCceeeeeecccc------cC--cccceEEEEECCCCCE-EEEeeCCCee
Q 006825          471 LASAGEDCVIHVWQVVESERKGELLEKQE------DG--HLNMLLLANGSPEPTS-LSPKHLDNHL  527 (630)
Q Consensus       471 LASgS~DgtIrVWDl~tg~~~~~l~~~~~------~g--h~~~V~svafSpdg~~-lasgs~Dg~I  527 (630)
                      .+....++.|.+-|..+++.+..+.....      ..  .......++|+|+++. ++++.....+
T Consensus       165 yvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v  230 (266)
T 2iwa_A          165 WANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKL  230 (266)
T ss_dssp             EEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEE
T ss_pred             EEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeE
Confidence            66666788999999999998887642211      01  1135679999999765 4455455555

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=97.33  E-value=0.042  Score=61.61  Aligned_cols=137  Identities=9%  Similarity=-0.027  Sum_probs=79.0

Q ss_pred             ccCCC---EEEEEeCCCcEEEEECcCCceeeeeeccccc--------Ccccce--------------------------E
Q 006825          465 SLDGR---YLASAGEDCVIHVWQVVESERKGELLEKQED--------GHLNML--------------------------L  507 (630)
Q Consensus       465 SpDG~---~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~--------gh~~~V--------------------------~  507 (630)
                      ..+|+   +|+.++.+|.+.++|..+|+.+.........        ....++                          .
T Consensus       310 ~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~  389 (571)
T 2ad6_A          310 PVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQG  389 (571)
T ss_dssp             EETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSC
T ss_pred             ccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCC
Confidence            35784   6788999999999999999877654211000        000011                          2


Q ss_pred             EEEECCCCCEEEEeeCCCeeeeecccccccccc----------c-------ccCccccccEEEeC-CCCceEEeccCCCC
Q 006825          508 LANGSPEPTSLSPKHLDNHLEKKRRGRSINRKS----------L-------SLDHMVVPETVFAL-SDKPICSFQGHLDD  569 (630)
Q Consensus       508 svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s----------~-------s~d~~i~~~~Vwdl-sgk~l~tL~GHs~~  569 (630)
                      .++++|+..++.....+....++..........          .       .....+   ..|++ +|+.+-++... ..
T Consensus       390 ~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l---~a~D~~tG~~~W~~~~~-~~  465 (571)
T 2ad6_A          390 VDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQI---RAFDLTTGKAKWTKWEK-FA  465 (571)
T ss_dssp             BCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEE---EEECTTTCCEEEEEEES-SC
T ss_pred             CceECCCCCEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeE---EEEECCCCCEEEEecCC-CC
Confidence            356778877777665543332221111000000          0       011222   55666 67777666432 22


Q ss_pred             EEEEEEc-CCCeEEEEECCCcEEEEeCCCCcEEEEEe
Q 006825          570 VLDLSWS-KSQHLLSSSMDKTVRLWHLSSKTCLKIFS  605 (630)
Q Consensus       570 V~sLafS-Pd~~LaSgS~DgtVrIWDl~tg~~l~t~~  605 (630)
                      +....+. .+++++.++.|+.|+.||..+|+++..+.
T Consensus       466 ~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~  502 (571)
T 2ad6_A          466 AWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFK  502 (571)
T ss_dssp             CCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             ccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEe
Confidence            2222222 23778889999999999999999999997

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=97.31  E-value=0.013  Score=67.80  Aligned_cols=212  Identities=7%  Similarity=-0.030  Sum_probs=111.4

Q ss_pred             ceEeeecceeeecCcc-ceeEEEee-c---ceE-----eecCCCccEecccCCCC-ceeEE-ecCCccCCEEEEEEcCCC
Q 006825          325 RQLTIEEFEMCVGHSP-IVQELMRR-Q---NVE-----EGNKDSFDLNNNGSSGG-GMKSK-KKGSWFKSIRTVASSVTG  392 (630)
Q Consensus       325 ~~lt~eef~~l~GHs~-~V~~Lafs-~---~la-----SgS~D~tvr~vWD~~tG-~~~~~-lk~gH~~~V~sVAfSpdG  392 (630)
                      +++.+..-..-.+|.- .+....|+ |   .||     .|+...+++ ++|+.+| +.+.. +. +   ....++|+|||
T Consensus       158 ~~vlld~n~~a~~~~~~~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~-v~dl~~g~~~l~~~~~-~---~~~~~~WspDg  232 (751)
T 2xe4_A          158 EEVIIDVNQVAEGKAFCDVMEVKPAPPEHDLVAFSVDMSGNEVYTIE-FKRISDPSQTIADKVS-G---TNGEIVWGPDH  232 (751)
T ss_dssp             CEEEEEHHHHTTTCSCCEEEEEEECTTTTCEEEEEEESSSSSCEEEE-EEETTCTTCCCCCCEE-E---ECSCCEECSST
T ss_pred             CEEEechhHhccCCCeEEEeeeEecCCCCCEEEEEEeCCCCceEEEE-EEECCCCCEeCCcccc-C---ceeeEEEecCC
Confidence            3444443222345554 67788899 7   333     233334688 9999999 63221 11 1   12368999999


Q ss_pred             CeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEec-ccCcCEEEEEEccCCCEE
Q 006825          393 HKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQ-AHNGSIWSIKFSLDGRYL  471 (630)
Q Consensus       393 ~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~-gHt~~V~sVaFSpDG~~L  471 (630)
                      +.|+-...+.                 .       ....+|+++++.+++...   ...+. .+......+.|+|||++|
T Consensus       233 ~~l~y~~~d~-----------------~-------~~~~~v~~~~lgt~~~~~---~lv~~~~~~~~~~~~~~SpDg~~l  285 (751)
T 2xe4_A          233 TSLFYVTKDE-----------------T-------LRENKVWRHVMGKLQSED---VCLYEEHNPLFSAFMYKAADTNTL  285 (751)
T ss_dssp             TEEEEEEECT-----------------T-------CCEEEEEEEETTSCGGGC---EEEEECCCTTCEEEEEECTTSSEE
T ss_pred             CEEEEEEECC-----------------C-------CCCCEEEEEECCCCchhc---EEEEecCCCceEEEEEECCCCCEE
Confidence            8876543321                 0       111368888886653211   11122 233456789999999988


Q ss_pred             EEEeC---CCcEEEEECcCCc-ee--eeeecccccCcccceEEEEECCCCCEEEEeeCC--Ceeeeeccccccccccccc
Q 006825          472 ASAGE---DCVIHVWQVVESE-RK--GELLEKQEDGHLNMLLLANGSPEPTSLSPKHLD--NHLEKKRRGRSINRKSLSL  543 (630)
Q Consensus       472 ASgS~---DgtIrVWDl~tg~-~~--~~l~~~~~~gh~~~V~svafSpdg~~lasgs~D--g~I~i~~~~~~~~~~s~s~  543 (630)
                      +..+.   ...|.++|+.++. ..  ..+    ..+.....+.+.|+..+.+++....+  +..++              
T Consensus       286 ~~~~~~~~~~~l~~~d~~~~~~~~~~~~l----~~~~~~~~~s~~~~~g~~l~~~t~~~~a~~~~L--------------  347 (751)
T 2xe4_A          286 CIGSQSPETAEVHLLDLRKGNAHNTLEIV----RPREKGVRYDVQMHGTSHLVILTNEGGAVNHKL--------------  347 (751)
T ss_dssp             EEEEECSSCEEEEEEESSSCTTCCCEEES----SCCCTTCCEEEEEETTTEEEEEECTTTCTTCEE--------------
T ss_pred             EEEecCCCCceEEEEECCCCCCCceeEEe----ecCCCCceEEEeeeeCCEEEEEeCCCCCCCcEE--------------
Confidence            87653   3458888987753 12  222    13334455556554444444443332  22211              


Q ss_pred             CccccccEEEeCCC-CceEE-eccCCC--CEEEEEEcCCCeEEEEECCCcEEEE
Q 006825          544 DHMVVPETVFALSD-KPICS-FQGHLD--DVLDLSWSKSQHLLSSSMDKTVRLW  593 (630)
Q Consensus       544 d~~i~~~~Vwdlsg-k~l~t-L~GHs~--~V~sLafSPd~~LaSgS~DgtVrIW  593 (630)
                             .++++.. ..... +..|..  .+..+.+..+.++++...|+..+||
T Consensus       348 -------~~~d~~~~~~~~~~li~~~~~~~l~~~~~~~~~lv~~~~~~g~~~l~  394 (751)
T 2xe4_A          348 -------LIAPRGQPSDWSHVLVDHSEDVFMESIAVRSNYLVVAGRRAGLTRIW  394 (751)
T ss_dssp             -------EEEETTSTTCCCCEEECCCSSEEEEEEEECSSEEEEEEEETTEEEEE
T ss_pred             -------EEEcCCCcccceeeEECCCCCcEEEEEEEECCEEEEEEEeCCEEEEE
Confidence                   2223321 22222 333443  3455666544666777788865554

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=97.16  E-value=0.015  Score=67.25  Aligned_cols=166  Identities=10%  Similarity=0.000  Sum_probs=95.1

Q ss_pred             CccC-CEEEEEEc-CCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCC-cccceeeeeEecc
Q 006825          378 SWFK-SIRTVASS-VTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCK-DLTALYKCQEIQA  454 (630)
Q Consensus       378 gH~~-~V~sVAfS-pdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~-el~~~~~v~tL~g  454 (630)
                      +|.- .+...+|| |||++++-+.+.                        .|....+|+++|+.++ +...    ..+..
T Consensus       170 ~~~~~~~~~~~~S~PDG~~lAy~~~~------------------------~G~~~~~l~v~dl~~g~~~l~----~~~~~  221 (751)
T 2xe4_A          170 GKAFCDVMEVKPAPPEHDLVAFSVDM------------------------SGNEVYTIEFKRISDPSQTIA----DKVSG  221 (751)
T ss_dssp             TCSCCEEEEEEECTTTTCEEEEEEES------------------------SSSSCEEEEEEETTCTTCCCC----CCEEE
T ss_pred             CCCeEEEeeeEecCCCCCEEEEEEeC------------------------CCCceEEEEEEECCCCCEeCC----ccccC
Confidence            3443 67789999 999988743211                        1233457999999887 5311    11211


Q ss_pred             cCcCEEEEEEccCCCEEEEEeCC-----CcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCC-eee
Q 006825          455 HNGSIWSIKFSLDGRYLASAGED-----CVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDN-HLE  528 (630)
Q Consensus       455 Ht~~V~sVaFSpDG~~LASgS~D-----gtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg-~I~  528 (630)
                         ....++|+|||+.|+-...|     ..|.+|++.++.....++..  .........+.|+|||++|+.....+ .-.
T Consensus       222 ---~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~--~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~  296 (751)
T 2xe4_A          222 ---TNGEIVWGPDHTSLFYVTKDETLRENKVWRHVMGKLQSEDVCLYE--EHNPLFSAFMYKAADTNTLCIGSQSPETAE  296 (751)
T ss_dssp             ---ECSCCEECSSTTEEEEEEECTTCCEEEEEEEETTSCGGGCEEEEE--CCCTTCEEEEEECTTSSEEEEEEECSSCEE
T ss_pred             ---ceeeEEEecCCCEEEEEEECCCCCCCEEEEEECCCCchhcEEEEe--cCCCceEEEEEECCCCCEEEEEecCCCCce
Confidence               13468899999988877765     35888888776532222100  12223456789999999888765332 110


Q ss_pred             eecccccccccccccCccccccEEEeCCC---Cc-eEEe-ccCCCCEEEEEEcCCC-eEEEEECC----CcEEEEeCCC
Q 006825          529 KKRRGRSINRKSLSLDHMVVPETVFALSD---KP-ICSF-QGHLDDVLDLSWSKSQ-HLLSSSMD----KTVRLWHLSS  597 (630)
Q Consensus       529 i~~~~~~~~~~s~s~d~~i~~~~Vwdlsg---k~-l~tL-~GHs~~V~sLafSPd~-~LaSgS~D----gtVrIWDl~t  597 (630)
                      +                     .++++.+   +. +..+ .+.......+.|+..+ +++....+    ..|.++++.+
T Consensus       297 l---------------------~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~  354 (751)
T 2xe4_A          297 V---------------------HLLDLRKGNAHNTLEIVRPREKGVRYDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQ  354 (751)
T ss_dssp             E---------------------EEEESSSCTTCCCEEESSCCCTTCCEEEEEETTTEEEEEECTTTCTTCEEEEEETTS
T ss_pred             E---------------------EEEECCCCCCCceeEEeecCCCCceEEEeeeeCCEEEEEeCCCCCCCcEEEEEcCCC
Confidence            0                     3445522   22 1333 3344556777776664 44444443    3566667664

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=97.01  E-value=0.34  Score=50.41  Aligned_cols=148  Identities=7%  Similarity=-0.092  Sum_probs=86.0

Q ss_pred             EEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCC-EEEEEeCC-CcEEEEECcCCceeeeeecccccCc
Q 006825          425 FHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGR-YLASAGED-CVIHVWQVVESERKGELLEKQEDGH  502 (630)
Q Consensus       425 ~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~-~LASgS~D-gtIrVWDl~tg~~~~~l~~~~~~gh  502 (630)
                      ++-.....|.+.+......     ...+.........|++.|.+. ++++-... +.|...++... ....+.    ...
T Consensus       132 ~~d~~~~~I~~~~~dG~~~-----~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~-~~~~~~----~~~  201 (349)
T 3v64_C          132 WTDSGTSRIEVANLDGAHR-----KVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGS-GRRIIA----DTH  201 (349)
T ss_dssp             EEETTTTEEEEEETTSCSC-----EEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC-SCEESC----CSS
T ss_pred             EEcCCCCeEEEEcCCCCce-----EEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCC-CcEEEE----ECC
Confidence            4444556788887764421     112233445678999999555 44554444 77888887533 222321    222


Q ss_pred             ccceEEEEECCCCCEEE-EeeCCCeeeeecccccccccccccCccccccEEEeCCCCceEEe-ccCCCCEEEEEEcCCCe
Q 006825          503 LNMLLLANGSPEPTSLS-PKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSF-QGHLDDVLDLSWSKSQH  580 (630)
Q Consensus       503 ~~~V~svafSpdg~~la-sgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL-~GHs~~V~sLafSPd~~  580 (630)
                      ......++++|++..|. +-...+.|                       ..+++.|....++ .........|++..+.+
T Consensus       202 ~~~PnGla~d~~~~~lY~aD~~~~~I-----------------------~~~~~dG~~~~~~~~~~~~~P~giav~~~~l  258 (349)
T 3v64_C          202 LFWPNGLTIDYAGRRMYWVDAKHHVI-----------------------ERANLDGSHRKAVISQGLPHPFAITVFEDSL  258 (349)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEE-----------------------EEEETTSCSCEEEECSSCSSEEEEEEETTEE
T ss_pred             CCCcceEEEeCCCCEEEEEECCCCEE-----------------------EEEeCCCCceEEEEeCCCCCceEEEEECCEE
Confidence            34567899998655444 44444555                       4555555443333 22334567777744466


Q ss_pred             EEEEECCCcEEEEeCCCCcEEEEEe
Q 006825          581 LLSSSMDKTVRLWHLSSKTCLKIFS  605 (630)
Q Consensus       581 LaSgS~DgtVrIWDl~tg~~l~t~~  605 (630)
                      +++-...+.|...+..+|+.+.++.
T Consensus       259 y~td~~~~~V~~~~~~~G~~~~~i~  283 (349)
T 3v64_C          259 YWTDWHTKSINSANKFTGKNQEIIR  283 (349)
T ss_dssp             EEEETTTTEEEEEETTTCCSCEEEE
T ss_pred             EEecCCCCeEEEEEccCCCccEEec
Confidence            6677778888888877776665554

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=97.00  E-value=0.25  Score=55.47  Aligned_cols=54  Identities=15%  Similarity=0.147  Sum_probs=37.7

Q ss_pred             EEEeC-CCCceEEeccCCCCEEEEEE-cCCCeEEEEECCCcEEEEeCCCCcEEEEEe
Q 006825          551 TVFAL-SDKPICSFQGHLDDVLDLSW-SKSQHLLSSSMDKTVRLWHLSSKTCLKIFS  605 (630)
Q Consensus       551 ~Vwdl-sgk~l~tL~GHs~~V~sLaf-SPd~~LaSgS~DgtVrIWDl~tg~~l~t~~  605 (630)
                      ..|++ +|+.+-++..+. .+..-.. ...++++.|+.|+.++.||.++|+.+..+.
T Consensus       469 ~A~D~~tG~~~W~~~~~~-~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~  524 (582)
T 1flg_A          469 RAMDPVSGKVVWEHKEHL-PLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQ  524 (582)
T ss_dssp             EEECTTTCCEEEEEEESS-CCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             EEEECCCCCEEEEecCCC-CCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEec
Confidence            55676 677776654332 2221111 124788889999999999999999999997

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=96.96  E-value=0.012  Score=66.34  Aligned_cols=161  Identities=11%  Similarity=-0.060  Sum_probs=92.6

Q ss_pred             CCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCcc---c--cCCcceEEEee------cCCCe--
Q 006825          357 DSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSS---E--KGGRRSSSATD------DSQDV--  423 (630)
Q Consensus       357 D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s---~--~gh~~~Vsa~~------~s~d~--  423 (630)
                      ++++- +.|.++.+...++..+-  .-..++++|+|+++...+.+.+...   .  ..-...|....      +.+++  
T Consensus       174 ~~~vt-vID~~t~~v~~qI~Vgg--~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~  250 (595)
T 1fwx_A          174 VNVFT-AVDADKWEVAWQVLVSG--NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDY  250 (595)
T ss_dssp             EEEEE-EEETTTTEEEEEEEESS--CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCS
T ss_pred             CceEE-EEECCCCeEEEEEEeCC--CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCe
Confidence            34555 88999988777766322  2345789999999888775542211   0  00001111100      00111  


Q ss_pred             EEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEe-CCCcEEEEECcCCce------------
Q 006825          424 SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAG-EDCVIHVWQVVESER------------  490 (630)
Q Consensus       424 l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS-~DgtIrVWDl~tg~~------------  490 (630)
                      ..-    +.|.+.|..+.+...  .+..+.-- ....++.|+|||++++.++ .+.+|.++|+.+.+.            
T Consensus       251 ~~i----~~V~VID~~~~~~~~--~~~~Ipvg-~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v  323 (595)
T 1fwx_A          251 QEL----NGVKVVDGRKEASSL--FTRYIPIA-NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAV  323 (595)
T ss_dssp             EEE----TTEEEEECSGGGCCS--SEEEEEEE-SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGE
T ss_pred             eEE----CcEEEEeCcccCCce--eEEEEecC-CCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccce
Confidence            121    348888887621111  02223211 2345799999999766654 778999999986531            


Q ss_pred             eeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeeccc
Q 006825          491 KGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRG  533 (630)
Q Consensus       491 ~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~  533 (630)
                      ..++      .-......++|+|+|..+++...+..|.+|+..
T Consensus       324 ~~~v------~vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~  360 (595)
T 1fwx_A          324 VAEP------ELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIE  360 (595)
T ss_dssp             EECC------BCCSCEEEEEECTTSEEEEEETTTTEEEEEEHH
T ss_pred             EEEc------CCCCCcceEEECCCCeEEEEEecCCcEEEEEhh
Confidence            1121      112346789999999666677788888555543

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=96.93  E-value=0.32  Score=51.37  Aligned_cols=148  Identities=7%  Similarity=-0.097  Sum_probs=86.5

Q ss_pred             EEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEE-eCC-CcEEEEECcCCceeeeeecccccCc
Q 006825          425 FHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASA-GED-CVIHVWQVVESERKGELLEKQEDGH  502 (630)
Q Consensus       425 ~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASg-S~D-gtIrVWDl~tg~~~~~l~~~~~~gh  502 (630)
                      ++-.....|.+.+......     ...+.........|++.|.+.+|+.. ... +.|...++... ....+.    ...
T Consensus       175 ~~d~~~~~I~~~~~dg~~~-----~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~-~~~~~~----~~~  244 (386)
T 3v65_B          175 WTDSGTSRIEVANLDGAHR-----KVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGS-GRRIIA----DTH  244 (386)
T ss_dssp             EEETTTTEEEECBTTSCSC-----EEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC-SCEEEE----CSS
T ss_pred             EEcCCCCeEEEEeCCCCce-----EEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCC-CcEEEE----ECC
Confidence            4444456777777654321     11223334567899999866554444 344 67877777533 222321    222


Q ss_pred             ccceEEEEECCCCCEE-EEeeCCCeeeeecccccccccccccCccccccEEEeCCCCceEEe-ccCCCCEEEEEEcCCCe
Q 006825          503 LNMLLLANGSPEPTSL-SPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSF-QGHLDDVLDLSWSKSQH  580 (630)
Q Consensus       503 ~~~V~svafSpdg~~l-asgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL-~GHs~~V~sLafSPd~~  580 (630)
                      ......|+++|++..| ++-...+.|                       ..+++.|....++ .........|++..+.+
T Consensus       245 ~~~PnGlavd~~~~~lY~aD~~~~~I-----------------------~~~d~dG~~~~~~~~~~~~~P~giav~~~~l  301 (386)
T 3v65_B          245 LFWPNGLTIDYAGRRMYWVDAKHHVI-----------------------ERANLDGSHRKAVISQGLPHPFAITVFEDSL  301 (386)
T ss_dssp             CSCEEEEEEEGGGTEEEEEETTTTEE-----------------------EEECTTSCSCEEEECSSCSSEEEEEEETTEE
T ss_pred             CCCeeeEEEeCCCCEEEEEECCCCEE-----------------------EEEeCCCCeeEEEEECCCCCceEEEEECCEE
Confidence            3456789999765544 444444555                       4555555443333 22334567788854466


Q ss_pred             EEEEECCCcEEEEeCCCCcEEEEEe
Q 006825          581 LLSSSMDKTVRLWHLSSKTCLKIFS  605 (630)
Q Consensus       581 LaSgS~DgtVrIWDl~tg~~l~t~~  605 (630)
                      +++-...+.|..++..+|+.+.++.
T Consensus       302 y~td~~~~~V~~~~~~~G~~~~~i~  326 (386)
T 3v65_B          302 YWTDWHTKSINSANKFTGKNQEIIR  326 (386)
T ss_dssp             EEEETTTTEEEEEETTTCCSCEEEE
T ss_pred             EEeeCCCCeEEEEECCCCcceEEEc
Confidence            7777788899999977777666665

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=96.92  E-value=0.063  Score=54.48  Aligned_cols=169  Identities=8%  Similarity=-0.019  Sum_probs=98.3

Q ss_pred             ceeEEEEcCCCceEeeecceeeecCccceeEEEeec-ceEeec-CCCccEecccCCCCceeEEecCCccCCEEEEEEcCC
Q 006825          314 TWKKVKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQ-NVEEGN-KDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVT  391 (630)
Q Consensus       314 ~~~~l~dv~TG~~lt~eef~~l~GHs~~V~~Lafs~-~laSgS-~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpd  391 (630)
                      ...+..|+.||+.+.--.    .+.......|++.. .|.... .++++. ++|.++++.+.++..+-    ...++.+|
T Consensus        65 S~v~~vD~~Tgkv~~~~~----l~~~~FgeGit~~g~~ly~ltw~~~~v~-v~D~~t~~~~~ti~~~~----eG~glt~d  135 (262)
T 3nol_A           65 SSIRKVDIESGKTLQQIE----LGKRYFGEGISDWKDKIVGLTWKNGLGF-VWNIRNLRQVRSFNYDG----EGWGLTHN  135 (262)
T ss_dssp             EEEEEECTTTCCEEEEEE----CCTTCCEEEEEEETTEEEEEESSSSEEE-EEETTTCCEEEEEECSS----CCCCEEEC
T ss_pred             ceEEEEECCCCcEEEEEe----cCCccceeEEEEeCCEEEEEEeeCCEEE-EEECccCcEEEEEECCC----CceEEecC
Confidence            345666778888772111    12222333455544 222223 356777 99999999998887321    11233344


Q ss_pred             CCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccC-cCEEEEEEccCCCE
Q 006825          392 GHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHN-GSIWSIKFSLDGRY  470 (630)
Q Consensus       392 G~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt-~~V~sVaFSpDG~~  470 (630)
                      |+.|                             +......+|+++|..+.+......+. ..++. ..++.+.|. +|++
T Consensus       136 g~~L-----------------------------~~SdGs~~i~~iDp~T~~v~~~I~V~-~~g~~~~~lNELe~~-~G~l  184 (262)
T 3nol_A          136 DQYL-----------------------------IMSDGTPVLRFLDPESLTPVRTITVT-AHGEELPELNELEWV-DGEI  184 (262)
T ss_dssp             SSCE-----------------------------EECCSSSEEEEECTTTCSEEEEEECE-ETTEECCCEEEEEEE-TTEE
T ss_pred             CCEE-----------------------------EEECCCCeEEEEcCCCCeEEEEEEec-cCCccccccceeEEE-CCEE
Confidence            4433                             33334667999998776532211111 11222 345567776 7877


Q ss_pred             EEEEeCCCcEEEEECcCCceeeeeeccccc-------CcccceEEEEECCCCCEEEEee
Q 006825          471 LASAGEDCVIHVWQVVESERKGELLEKQED-------GHLNMLLLANGSPEPTSLSPKH  522 (630)
Q Consensus       471 LASgS~DgtIrVWDl~tg~~~~~l~~~~~~-------gh~~~V~svafSpdg~~lasgs  522 (630)
                      .|..-.+..|.+-|..+++.+..+....+.       .-......||++|++..|...+
T Consensus       185 yan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTG  243 (262)
T 3nol_A          185 FANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTG  243 (262)
T ss_dssp             EEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEE
T ss_pred             EEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEEC
Confidence            776667889999999999988876432111       1123567999999866555543

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=96.88  E-value=0.35  Score=49.78  Aligned_cols=148  Identities=9%  Similarity=-0.057  Sum_probs=87.3

Q ss_pred             EEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEe--CCCcEEEEECcCCceeeeeecccccCc
Q 006825          425 FHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAG--EDCVIHVWQVVESERKGELLEKQEDGH  502 (630)
Q Consensus       425 ~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS--~DgtIrVWDl~tg~~~~~l~~~~~~gh  502 (630)
                      ++-.....|.+++......     ...+......-..|++.|.+.+|+-+.  ..+.|...++. |.....+.    ...
T Consensus        95 ~~d~~~~~I~~~~~dG~~~-----~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~d-G~~~~~~~----~~~  164 (318)
T 3sov_A           95 WTDSETNRIEVSNLDGSLR-----KVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMD-GSSRFIII----NSE  164 (318)
T ss_dssp             EEETTTTEEEEEETTSCSC-----EEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETT-SCSCEEEE----CSS
T ss_pred             EEECCCCEEEEEECCCCcE-----EEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcC-CCCeEEEE----ECC
Confidence            4444566788888765421     111223445678999998655555444  35677777775 33333321    122


Q ss_pred             ccceEEEEECCCCCEEEE-eeCCCeeeeecccccccccccccCccccccEEEeCCCCceEEec-cCCCCEEEEEEcCCCe
Q 006825          503 LNMLLLANGSPEPTSLSP-KHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQ-GHLDDVLDLSWSKSQH  580 (630)
Q Consensus       503 ~~~V~svafSpdg~~las-gs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL~-GHs~~V~sLafSPd~~  580 (630)
                      ......++++|++..|.. -...+.|                       ..+++.|....++. +.......|++..+.+
T Consensus       165 l~~Pnglavd~~~~~lY~aD~~~~~I-----------------------~~~d~dG~~~~~~~~~~~~~P~glav~~~~l  221 (318)
T 3sov_A          165 IYWPNGLTLDYEEQKLYWADAKLNFI-----------------------HKSNLDGTNRQAVVKGSLPHPFALTLFEDIL  221 (318)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEE-----------------------EEEETTSCSCEEEECSCCSCEEEEEEETTEE
T ss_pred             CCCccEEEEeccCCEEEEEECCCCEE-----------------------EEEcCCCCceEEEecCCCCCceEEEEeCCEE
Confidence            345678999986555444 4444555                       45555554444332 2334556777765566


Q ss_pred             EEEEECCCcEEEEeCCCCcEEEEEe
Q 006825          581 LLSSSMDKTVRLWHLSSKTCLKIFS  605 (630)
Q Consensus       581 LaSgS~DgtVrIWDl~tg~~l~t~~  605 (630)
                      +.+-...+.|..++..+|+.+..+.
T Consensus       222 ywtd~~~~~V~~~~~~~G~~~~~i~  246 (318)
T 3sov_A          222 YWTDWSTHSILACNKYTGEGLREIH  246 (318)
T ss_dssp             EEEETTTTEEEEEETTTCCSCEEEE
T ss_pred             EEEecCCCeEEEEECCCCCceEEEe
Confidence            6777778889999988777655554

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=96.84  E-value=0.13  Score=52.19  Aligned_cols=189  Identities=9%  Similarity=0.033  Sum_probs=93.2

Q ss_pred             EEEecCCcEEEEEeCCCCcccceeeee--------------EecccCcCEEEEEEcc-CCCEEEEEeCCCcEEEEECcCC
Q 006825          424 SFHGQERVRVRQYGKSCKDLTALYKCQ--------------EIQAHNGSIWSIKFSL-DGRYLASAGEDCVIHVWQVVES  488 (630)
Q Consensus       424 l~Sgs~Dg~VriWd~~~~el~~~~~v~--------------tL~gHt~~V~sVaFSp-DG~~LASgS~DgtIrVWDl~tg  488 (630)
                      ++++..++.|..|+..++.+..+....              ........+..|++.+ +|++++ +...+.|.++|..++
T Consensus        33 l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v-~d~~~~i~~~d~~~g  111 (322)
T 2fp8_A           33 FYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYI-VDCYYHLSVVGSEGG  111 (322)
T ss_dssp             EEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEE-EETTTEEEEECTTCE
T ss_pred             EEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEE-EECCCCEEEEeCCCC
Confidence            456666778888887655432110000              0001123578999998 676555 444455888887654


Q ss_pred             ceeeeeecccccC-cccceEEEEECC-CCCEEEEeeCCCeeeeeccccc-ccccccccCccccccEEEeCCCCceEEecc
Q 006825          489 ERKGELLEKQEDG-HLNMLLLANGSP-EPTSLSPKHLDNHLEKKRRGRS-INRKSLSLDHMVVPETVFALSDKPICSFQG  565 (630)
Q Consensus       489 ~~~~~l~~~~~~g-h~~~V~svafSp-dg~~lasgs~Dg~I~i~~~~~~-~~~~s~s~d~~i~~~~Vwdlsgk~l~tL~G  565 (630)
                      .. ..+... ..+ .......+++.+ +|.++++..... .   ..... ...........+   ..++..+..+..+..
T Consensus       112 ~~-~~~~~~-~~~~~~~~p~~i~~d~~~G~l~v~d~~~~-~---~~~~~~~~~~~~~~~g~v---~~~d~~~~~~~~~~~  182 (322)
T 2fp8_A          112 HA-TQLATS-VDGVPFKWLYAVTVDQRTGIVYFTDVSTL-Y---DDRGVQQIMDTSDKTGRL---IKYDPSTKETTLLLK  182 (322)
T ss_dssp             EC-EEEESE-ETTEECSCEEEEEECTTTCCEEEEESCSS-C---CTTCHHHHHHHTCCCEEE---EEEETTTTEEEEEEE
T ss_pred             EE-EEeccc-CCCCcccccceEEEecCCCEEEEECCccc-c---cccccceehcccCCCceE---EEEeCCCCEEEEecc
Confidence            32 222111 111 123467899999 898777653211 0   00000 000000001111   344443233333222


Q ss_pred             CCCCEEEEEEcCC-CeE-EEEECCCcEEEEeCCCCc--EEEEEe-cCCceEEEE-cCCCcEEEE
Q 006825          566 HLDDVLDLSWSKS-QHL-LSSSMDKTVRLWHLSSKT--CLKIFS-HSDYDISLV-DRLMLRFAY  623 (630)
Q Consensus       566 Hs~~V~sLafSPd-~~L-aSgS~DgtVrIWDl~tg~--~l~t~~-H~~~V~sVa-s~~~~~lAs  623 (630)
                      .-.....|+|+|+ ++| ++-...+.|.+|++....  ....+. ..+ ...|+ ++.+.++++
T Consensus       183 ~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l~va  245 (322)
T 2fp8_A          183 ELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWVS  245 (322)
T ss_dssp             EESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSCEEEE
T ss_pred             CCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCCEEEE
Confidence            2233467999999 644 455667899999987521  122232 222 56677 555544433

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=96.77  E-value=0.046  Score=55.63  Aligned_cols=171  Identities=8%  Similarity=-0.092  Sum_probs=100.3

Q ss_pred             cCCCceeEEEEcCCCceEeeecceeeecCccceeEEEeec-ceE-eecCCCccEecccCCCCceeEEecCCccCCEEEEE
Q 006825          310 QEDGTWKKVKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQ-NVE-EGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVA  387 (630)
Q Consensus       310 ~~dg~~~~l~dv~TG~~lt~eef~~l~GHs~~V~~Lafs~-~la-SgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVA  387 (630)
                      +.+|. .+..|+.||+.+     .++.+...+...+++.. .|. ..-.++.+. ++|.++++.+.++..+-.    ..+
T Consensus        72 G~~g~-v~~iD~~Tgkv~-----~~~l~~~~FgeGit~~g~~Ly~ltw~~~~v~-V~D~~Tl~~~~ti~~~~e----GwG  140 (268)
T 3nok_A           72 GHQGT-LRQLSLESAQPV-----WMERLGNIFAEGLASDGERLYQLTWTEGLLF-TWSGMPPQRERTTRYSGE----GWG  140 (268)
T ss_dssp             TTTTE-EEECCSSCSSCS-----EEEECTTCCEEEEEECSSCEEEEESSSCEEE-EEETTTTEEEEEEECSSC----CCC
T ss_pred             CCCCE-EEEEECCCCcEE-----eEECCCCcceeEEEEeCCEEEEEEccCCEEE-EEECCcCcEEEEEeCCCc----eeE
Confidence            33454 556677888887     32233333334455554 222 233456677 999999999988873211    122


Q ss_pred             EcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccC
Q 006825          388 SSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLD  467 (630)
Q Consensus       388 fSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpD  467 (630)
                      +.+||+.|                             +....+.+|+++|..+.+......+..-...-..++.|.|. +
T Consensus       141 Lt~Dg~~L-----------------------------~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-d  190 (268)
T 3nok_A          141 LCYWNGKL-----------------------------VRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-N  190 (268)
T ss_dssp             EEEETTEE-----------------------------EEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-T
T ss_pred             EecCCCEE-----------------------------EEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-C
Confidence            22444433                             33345778999998776542211111100111245677776 8


Q ss_pred             CCEEEEEeCCCcEEEEECcCCceeeeeecccc--------cCcccceEEEEECCCC-CEEEEe
Q 006825          468 GRYLASAGEDCVIHVWQVVESERKGELLEKQE--------DGHLNMLLLANGSPEP-TSLSPK  521 (630)
Q Consensus       468 G~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~--------~gh~~~V~svafSpdg-~~lasg  521 (630)
                      |++.|..-.+..|.+-|..+++.+..+....+        ..-......||+.|++ +++++|
T Consensus       191 G~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG  253 (268)
T 3nok_A          191 GVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG  253 (268)
T ss_dssp             TEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred             CEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence            87777666788999999999998877652211        1122456799999974 555555

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=96.75  E-value=0.21  Score=56.47  Aligned_cols=167  Identities=6%  Similarity=-0.074  Sum_probs=90.5

Q ss_pred             cEEEEEeCCCCcccceeeeeEecccC--------cCEEEEEEc-cCC---CEEEEEeCCCcEEEEECcCCceeeeeeccc
Q 006825          431 VRVRQYGKSCKDLTALYKCQEIQAHN--------GSIWSIKFS-LDG---RYLASAGEDCVIHVWQVVESERKGELLEKQ  498 (630)
Q Consensus       431 g~VriWd~~~~el~~~~~v~tL~gHt--------~~V~sVaFS-pDG---~~LASgS~DgtIrVWDl~tg~~~~~l~~~~  498 (630)
                      ..|..+|..+++..=   ...+..|.        .++. +... .+|   +.|+.++.+|.+.+.|..+|+.+.......
T Consensus       278 ~sv~Ald~~TG~~~W---~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~  353 (599)
T 1w6s_A          278 MTIFGRDADTGEAKF---GYQKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDD  353 (599)
T ss_dssp             SEEEEEETTTCCEEE---EEESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESST
T ss_pred             ceEEEEeCCCCceee---EeecCCCccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccC
Confidence            367778877775421   11222232        2232 2332 578   578889999999999999998876542110


Q ss_pred             c-------c-Ccccc--------------------------eEEEEECCCCCEEEEeeCCCeeeeecccc----cccc--
Q 006825          499 E-------D-GHLNM--------------------------LLLANGSPEPTSLSPKHLDNHLEKKRRGR----SINR--  538 (630)
Q Consensus       499 ~-------~-gh~~~--------------------------V~svafSpdg~~lasgs~Dg~I~i~~~~~----~~~~--  538 (630)
                      .       . ....+                          -..++++|+..++.....+....++....    ....  
T Consensus       354 ~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g  433 (599)
T 1w6s_A          354 TVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVG  433 (599)
T ss_dssp             TCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCC
T ss_pred             CcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceec
Confidence            0       0 00000                          12467788877777665443222111110    0000  


Q ss_pred             ----ccc---c------cCccccccEEEeC-CCCceEEeccCCCCEEEEEEc-CCCeEEEEECCCcEEEEeCCCCcEEEE
Q 006825          539 ----KSL---S------LDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSWS-KSQHLLSSSMDKTVRLWHLSSKTCLKI  603 (630)
Q Consensus       539 ----~s~---s------~d~~i~~~~Vwdl-sgk~l~tL~GHs~~V~sLafS-Pd~~LaSgS~DgtVrIWDl~tg~~l~t  603 (630)
                          ...   .      ....+   ..|++ +|+.+-+..-. ..+..-.+. ..+++..++.|+.|+.||.++|+.+..
T Consensus       434 ~~~~~~~~p~~~~~~~~~~G~l---~A~D~~tG~~~W~~~~~-~~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~lW~  509 (599)
T 1w6s_A          434 ATLNMYPGPKGDRQNYEGLGQI---KAYNAITGDYKWEKMER-FAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWK  509 (599)
T ss_dssp             EEEEEEECTTSBTTTTBCCEEE---EEECTTTCCEEEEEEES-SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred             ccceeccCCcCCcccCCCcCeE---EEEECCCCCEEeEecCC-CCccCcceEecCCEEEEECCCCeEEEEECCCCCEEEE
Confidence                000   0      11222   55666 67776665311 112111111 237777899999999999999999998


Q ss_pred             Ee
Q 006825          604 FS  605 (630)
Q Consensus       604 ~~  605 (630)
                      +.
T Consensus       510 ~~  511 (599)
T 1w6s_A          510 FK  511 (599)
T ss_dssp             EE
T ss_pred             ee
Confidence            87

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=96.73  E-value=0.29  Score=49.06  Aligned_cols=166  Identities=10%  Similarity=-0.008  Sum_probs=96.5

Q ss_pred             ceeEEEEcCCCceEeeecceeeecCccceeEEEeec-c-eEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCC
Q 006825          314 TWKKVKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQ-N-VEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVT  391 (630)
Q Consensus       314 ~~~~l~dv~TG~~lt~eef~~l~GHs~~V~~Lafs~-~-laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpd  391 (630)
                      ...+..|+.||+.+....    .+....-..+++.. . .+..-.++.+. ++|.+|.+.+.++..+-.    ..++.++
T Consensus        43 S~v~~vD~~tgkv~~~~~----l~~~~fgeGi~~~~~~ly~ltw~~~~v~-v~D~~tl~~~~ti~~~~~----Gwglt~d  113 (243)
T 3mbr_X           43 SSVRKVDLETGRILQRAE----VPPPYFGAGIVAWRDRLIQLTWRNHEGF-VYDLATLTPRARFRYPGE----GWALTSD  113 (243)
T ss_dssp             CEEEEEETTTCCEEEEEE----CCTTCCEEEEEEETTEEEEEESSSSEEE-EEETTTTEEEEEEECSSC----CCEEEEC
T ss_pred             ceEEEEECCCCCEEEEEe----CCCCcceeEEEEeCCEEEEEEeeCCEEE-EEECCcCcEEEEEeCCCC----ceEEeeC
Confidence            456677888888872211    11122223344444 2 22233456777 999999999998874311    1233344


Q ss_pred             CCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccC---cCEEEEEEccCC
Q 006825          392 GHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHN---GSIWSIKFSLDG  468 (630)
Q Consensus       392 G~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt---~~V~sVaFSpDG  468 (630)
                      |+.|                             +....+.+|+++|..+.+......+   ..+.   ..++-|.+. +|
T Consensus       114 g~~L-----------------------------~vSdgs~~l~~iDp~t~~~~~~I~V---~~~g~~~~~lNeLe~~-~G  160 (243)
T 3mbr_X          114 DSHL-----------------------------YMSDGTAVIRKLDPDTLQQVGSIKV---TAGGRPLDNLNELEWV-NG  160 (243)
T ss_dssp             SSCE-----------------------------EEECSSSEEEEECTTTCCEEEEEEC---EETTEECCCEEEEEEE-TT
T ss_pred             CCEE-----------------------------EEECCCCeEEEEeCCCCeEEEEEEE---ccCCcccccceeeEEe-CC
Confidence            4433                             3333467899999877653221111   1121   345566665 77


Q ss_pred             CEEEEEeCCCcEEEEECcCCceeeeeeccccc--------CcccceEEEEECCCCCEEEEe
Q 006825          469 RYLASAGEDCVIHVWQVVESERKGELLEKQED--------GHLNMLLLANGSPEPTSLSPK  521 (630)
Q Consensus       469 ~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~--------gh~~~V~svafSpdg~~lasg  521 (630)
                      ++.|..-.+..|.+-|..+++.+..+....+.        ........|++.|++..|...
T Consensus       161 ~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVT  221 (243)
T 3mbr_X          161 ELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVT  221 (243)
T ss_dssp             EEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEE
T ss_pred             EEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEE
Confidence            77766667889999999999988876532221        122356799999985554443

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=96.70  E-value=1.3  Score=50.68  Aligned_cols=253  Identities=8%  Similarity=-0.053  Sum_probs=145.0

Q ss_pred             ccceeEEEeec--ceEeecCCCccEecccCCCCceeEEec-------------CCccCCEEEEEEcCCCCeEEeecCCC-
Q 006825          339 SPIVQELMRRQ--NVEEGNKDSFDLNNNGSSGGGMKSKKK-------------GSWFKSIRTVASSVTGHKERRSSDER-  402 (630)
Q Consensus       339 s~~V~~Lafs~--~laSgS~D~tvr~vWD~~tG~~~~~lk-------------~gH~~~V~sVAfSpdG~~lasgS~D~-  402 (630)
                      ...|.+|+..+  .|.-|+..+.+. ++|..++.......             .-....|.++....+|.+-+..-..+ 
T Consensus       257 ~~~i~~i~~d~~g~lWigt~~~Gl~-~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~lWigt~~~Gl  335 (781)
T 3v9f_A          257 SSYIFSIKQLKDNKLWIATELNGIM-ILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNNIWIGTWGGGI  335 (781)
T ss_dssp             CCCEEEEEECTTSEEEEEESSSCEE-EEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCCEEEEEBSSCE
T ss_pred             CceEEEEEECCCCCEEEEeCCCCeE-EECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCCEEEEecCCeE
Confidence            35688888755  566666655666 78877665332111             12346799999999888544321222 


Q ss_pred             -----CCcc---c----------cCCcceEEEeecCCCe-EEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEE
Q 006825          403 -----DTSS---E----------KGGRRSSSATDDSQDV-SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIK  463 (630)
Q Consensus       403 -----dt~s---~----------~gh~~~Vsa~~~s~d~-l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVa  463 (630)
                           ....   .          .-....|.++....++ ++.|..++-|..|+..++.+....  ..-......|++|.
T Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~--~~~~~~~~~v~~i~  413 (781)
T 3v9f_A          336 NFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGKLWIGTDGGGINVFENGKRVAIYNK--ENRELLSNSVLCSL  413 (781)
T ss_dssp             EEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSCEEEEEBSSCEEEEETTEEEEECC-------CCCSBEEEEE
T ss_pred             EEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCCEEEEeCCCcEEEEECCCCeEEEcc--CCCCCCCcceEEEE
Confidence                 1111   0          0023457777666655 888887777888887654332110  00122346799999


Q ss_pred             EccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeeccccccccccccc
Q 006825          464 FSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSL  543 (630)
Q Consensus       464 FSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~  543 (630)
                      ..++|++.+ |..++-|.+++..+++...... .  .-....|.++...+++.+.+.. ..| +                
T Consensus       414 ~d~~g~lWi-gt~~~Gl~~~~~~~~~~~~~~~-~--~~~~~~v~~i~~d~~g~lwigt-~~G-l----------------  471 (781)
T 3v9f_A          414 KDSEGNLWF-GTYLGNISYYNTRLKKFQIIEL-E--KNELLDVRVFYEDKNKKIWIGT-HAG-V----------------  471 (781)
T ss_dssp             ECTTSCEEE-EETTEEEEEECSSSCEEEECCS-T--TTCCCCEEEEEECTTSEEEEEE-TTE-E----------------
T ss_pred             ECCCCCEEE-EeccCCEEEEcCCCCcEEEecc-C--CCCCCeEEEEEECCCCCEEEEE-CCc-e----------------
Confidence            998888655 6666778899987665332210 0  1134568888888888766654 344 4                


Q ss_pred             CccccccEEEeCCCCceEEec-c-----CCCCEEEEEEcCCCeEEEEECCCcEEEEeCCCCcEEEEEe-----cCCceEE
Q 006825          544 DHMVVPETVFALSDKPICSFQ-G-----HLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFS-----HSDYDIS  612 (630)
Q Consensus       544 d~~i~~~~Vwdlsgk~l~tL~-G-----Hs~~V~sLafSPd~~LaSgS~DgtVrIWDl~tg~~l~t~~-----H~~~V~s  612 (630)
                             ..++.....+..+. .     ....|.++...+++.|..|..++-|..||..+++.. .+.     ....|.+
T Consensus       472 -------~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~-~~~~~~~l~~~~i~~  543 (781)
T 3v9f_A          472 -------FVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGGVGIYTPDMQLVR-KFNQYEGFCSNTINQ  543 (781)
T ss_dssp             -------EEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESSSCEEEECTTCCEEE-EECTTTTCSCSCEEE
T ss_pred             -------EEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEEcCCCEEEEeCCCCeEE-EccCCCCCCCCeeEE
Confidence                   22333111111111 1     135789998888866666776555778998776543 343     2467888


Q ss_pred             EE-cCCC-cEEEEe
Q 006825          613 LV-DRLM-LRFAYG  624 (630)
Q Consensus       613 Va-s~~~-~~lAsg  624 (630)
                      |. ++.+ +++++.
T Consensus       544 i~~d~~g~lWi~T~  557 (781)
T 3v9f_A          544 IYRSSKGQMWLATG  557 (781)
T ss_dssp             EEECTTSCEEEEET
T ss_pred             EEECCCCCEEEEEC
Confidence            88 5444 455543

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=96.68  E-value=0.74  Score=47.77  Aligned_cols=157  Identities=8%  Similarity=-0.015  Sum_probs=88.6

Q ss_pred             EEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccC-CCEEEEEeCCCcEEEEECcCCceeeeeecccccCcc
Q 006825          425 FHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLD-GRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHL  503 (630)
Q Consensus       425 ~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpD-G~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~  503 (630)
                      ++-...++|+.++.......     ..+.........|++.+. ++++++-...+.|.+.++.... ...+.    ....
T Consensus        89 ~~D~~~~~I~r~~~~g~~~~-----~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~-~~~l~----~~~l  158 (349)
T 3v64_C           89 WSDVTLDRILRANLNGSNVE-----EVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAH-RKVLL----WQSL  158 (349)
T ss_dssp             EEETTTTEEEEEETTSCSCE-----EEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEE----CTTC
T ss_pred             EEeccCCceEEEecCCCCce-----EEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCc-eEEEE----eCCC
Confidence            44445667888887665321     112222344578999874 5555666677889999986443 22321    2233


Q ss_pred             cceEEEEECCCCCEEEEe-eCC-CeeeeecccccccccccccCccccccEEEeCCCCceEEecc-CCCCEEEEEEcCC-C
Q 006825          504 NMLLLANGSPEPTSLSPK-HLD-NHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQG-HLDDVLDLSWSKS-Q  579 (630)
Q Consensus       504 ~~V~svafSpdg~~lasg-s~D-g~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL~G-Hs~~V~sLafSPd-~  579 (630)
                      .....+++.|.+..|... ... ..|                       ..+++.|.....+.. .-..-+.|+|+|+ +
T Consensus       159 ~~P~~iavdp~~g~ly~td~~~~~~I-----------------------~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~  215 (349)
T 3v64_C          159 EKPRAIALHPMEGTIYWTDWGNTPRI-----------------------EASSMDGSGRRIIADTHLFWPNGLTIDYAGR  215 (349)
T ss_dssp             SCEEEEEEETTTTEEEEEECSSSCEE-----------------------EEEETTSCSCEESCCSSCSCEEEEEEETTTT
T ss_pred             CCcceEEEecCcCeEEEeccCCCCEE-----------------------EEEeCCCCCcEEEEECCCCCcceEEEeCCCC
Confidence            456789999865544443 333 344                       344455554444432 2334688999986 4


Q ss_pred             e-EEEEECCCcEEEEeCCCCcEEEEEe-cCCceEEEE
Q 006825          580 H-LLSSSMDKTVRLWHLSSKTCLKIFS-HSDYDISLV  614 (630)
Q Consensus       580 ~-LaSgS~DgtVrIWDl~tg~~l~t~~-H~~~V~sVa  614 (630)
                      . +++=+..+.|..+|+........+. .......|+
T Consensus       216 ~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~gia  252 (349)
T 3v64_C          216 RMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAIT  252 (349)
T ss_dssp             EEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEE
T ss_pred             EEEEEECCCCEEEEEeCCCCceEEEEeCCCCCceEEE
Confidence            4 4455567788888876433222222 333444454

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=96.64  E-value=1.4  Score=50.38  Aligned_cols=250  Identities=7%  Similarity=-0.052  Sum_probs=146.9

Q ss_pred             ccceeEEEeec--ceEeecCCCccEecccCCCCceeEEe--------cCCccCCEEEEEEcCCCCeEEeecCCC------
Q 006825          339 SPIVQELMRRQ--NVEEGNKDSFDLNNNGSSGGGMKSKK--------KGSWFKSIRTVASSVTGHKERRSSDER------  402 (630)
Q Consensus       339 s~~V~~Lafs~--~laSgS~D~tvr~vWD~~tG~~~~~l--------k~gH~~~V~sVAfSpdG~~lasgS~D~------  402 (630)
                      ...|.+|+.-+  .|-.|+.++.+. .++..++......        ..-....|.+++...+|.+-+......      
T Consensus       312 ~~~v~~i~~D~~g~lWigt~~~Gl~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~  390 (781)
T 3v9f_A          312 NASARYIFQDSFNNIWIGTWGGGIN-FISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGKLWIGTDGGGINVFEN  390 (781)
T ss_dssp             SSCEEEEEECSSCCEEEEEBSSCEE-EECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSCEEEEEBSSCEEEEET
T ss_pred             CCeEEEEEEeCCCCEEEEecCCeEE-EeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCCEEEEeCCCcEEEEEC
Confidence            45688888766  677788777787 7887765533321        111345799999999888544332222      


Q ss_pred             CCccc-------cCCcceEEEeecCCCe-EEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEE
Q 006825          403 DTSSE-------KGGRRSSSATDDSQDV-SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASA  474 (630)
Q Consensus       403 dt~s~-------~gh~~~Vsa~~~s~d~-l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASg  474 (630)
                      .+...       ......|.++....++ ++.|...+-|..|+..++.+......   .-....|.+|...++|++.+ |
T Consensus       391 ~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~---~~~~~~v~~i~~d~~g~lwi-g  466 (781)
T 3v9f_A          391 GKRVAIYNKENRELLSNSVLCSLKDSEGNLWFGTYLGNISYYNTRLKKFQIIELE---KNELLDVRVFYEDKNKKIWI-G  466 (781)
T ss_dssp             TEEEEECC-----CCCSBEEEEEECTTSCEEEEETTEEEEEECSSSCEEEECCST---TTCCCCEEEEEECTTSEEEE-E
T ss_pred             CCCeEEEccCCCCCCCcceEEEEECCCCCEEEEeccCCEEEEcCCCCcEEEeccC---CCCCCeEEEEEECCCCCEEE-E
Confidence            11111       1123456666655445 88888877888898876643211100   12346799999998888555 4


Q ss_pred             eCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEe
Q 006825          475 GEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFA  554 (630)
Q Consensus       475 S~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwd  554 (630)
                      .. +-|.+||..+++................|.++...++|.+.+.....|..                        .++
T Consensus       467 t~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~Gl~------------------------~~~  521 (781)
T 3v9f_A          467 TH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGGVG------------------------IYT  521 (781)
T ss_dssp             ET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESSSCEE------------------------EEC
T ss_pred             EC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEEcCCCEE------------------------EEe
Confidence            44 55888998776543221100001113578899999999877765445543                        233


Q ss_pred             CCCCceEEecc----CCCCEEEEEEcCCCeEEEEECCCcEEEEeCCCCcEEEEEe-----cCCceEEEE-cCCCc
Q 006825          555 LSDKPICSFQG----HLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFS-----HSDYDISLV-DRLML  619 (630)
Q Consensus       555 lsgk~l~tL~G----Hs~~V~sLafSPd~~LaSgS~DgtVrIWDl~tg~~l~t~~-----H~~~V~sVa-s~~~~  619 (630)
                      .....+..+..    ....|.++...+++.|..|...|-|..||..+++. ..+.     ....|.++. ++.+.
T Consensus       522 ~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~T~~Glv~~~d~~~~~~-~~~~~~~gl~~~~i~~i~~d~~g~  595 (781)
T 3v9f_A          522 PDMQLVRKFNQYEGFCSNTINQIYRSSKGQMWLATGEGLVCFPSARNFDY-QVFQRKEGLPNTHIRAISEDKNGN  595 (781)
T ss_dssp             TTCCEEEEECTTTTCSCSCEEEEEECTTSCEEEEETTEEEEESCTTTCCC-EEECGGGTCSCCCCCEEEECSSSC
T ss_pred             CCCCeEEEccCCCCCCCCeeEEEEECCCCCEEEEECCCceEEECCCCCcE-EEccccCCCCCceEEEEEECCCCC
Confidence            32222222321    23568899888875555555666658899887763 3343     234577777 54443

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=96.56  E-value=0.81  Score=46.59  Aligned_cols=148  Identities=5%  Similarity=-0.082  Sum_probs=87.6

Q ss_pred             EEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCC--CcEEEEECcCCceeeeeecccccCc
Q 006825          425 FHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGED--CVIHVWQVVESERKGELLEKQEDGH  502 (630)
Q Consensus       425 ~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~D--gtIrVWDl~tg~~~~~l~~~~~~gh  502 (630)
                      ++-...++|.+++......     ...+.........|++.|.+.+|+.+...  +.|...++. +.....+.    ...
T Consensus        93 ~~d~~~~~I~~~~~~g~~~-----~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~d-G~~~~~~~----~~~  162 (316)
T 1ijq_A           93 WTDSVLGTVSVADTKGVKR-----KTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN-GVDIYSLV----TEN  162 (316)
T ss_dssp             EEETTTTEEEEEETTSSSE-----EEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETT-SCCEEEEE----CSS
T ss_pred             EEECCCCEEEEEeCCCCce-----EEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCC-CCCeEEEE----ECC
Confidence            4444566788887764421     11122233567899999966555444432  678777774 33333331    222


Q ss_pred             ccceEEEEECCCCCEEEE-eeCCCeeeeecccccccccccccCccccccEEEeCCCCceEEecc---CCCCEEEEEEcCC
Q 006825          503 LNMLLLANGSPEPTSLSP-KHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQG---HLDDVLDLSWSKS  578 (630)
Q Consensus       503 ~~~V~svafSpdg~~las-gs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL~G---Hs~~V~sLafSPd  578 (630)
                      ......+++++++..|.. -...+.|                       ..+++.|....++..   .-.....|++..+
T Consensus       163 ~~~P~gla~d~~~~~lY~~D~~~~~I-----------------------~~~d~dg~~~~~~~~~~~~~~~P~giav~~~  219 (316)
T 1ijq_A          163 IQWPNGITLDLLSGRLYWVDSKLHSI-----------------------SSIDVNGGNRKTILEDEKRLAHPFSLAVFED  219 (316)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEE-----------------------EEEETTSCSCEEEEECTTTTSSEEEEEEETT
T ss_pred             CCCceEEEEeccCCEEEEEECCCCeE-----------------------EEEecCCCceEEEeecCCccCCcEEEEEECC
Confidence            345678999987655544 4444555                       555555544444421   2234567777554


Q ss_pred             CeEEEEECCCcEEEEeCCCCcEEEEEe
Q 006825          579 QHLLSSSMDKTVRLWHLSSKTCLKIFS  605 (630)
Q Consensus       579 ~~LaSgS~DgtVrIWDl~tg~~l~t~~  605 (630)
                      .++++-...+.|..++..+|+.+.++.
T Consensus       220 ~ly~~d~~~~~V~~~~~~~g~~~~~i~  246 (316)
T 1ijq_A          220 KVFWTDIINEAIFSANRLTGSDVNLLA  246 (316)
T ss_dssp             EEEEEETTTTEEEEEETTTCCCCEEEE
T ss_pred             EEEEEECCCCeEEEEeCCCCcceEEEe
Confidence            666677778899999988887666664

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=96.53  E-value=0.54  Score=49.57  Aligned_cols=193  Identities=7%  Similarity=-0.077  Sum_probs=106.2

Q ss_pred             CccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCcEEEEEe
Q 006825          358 SFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYG  437 (630)
Q Consensus       358 ~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd  437 (630)
                      ..|+ ..++.++.......  -......|+|.+.+..|                            +++-...++|+.++
T Consensus        96 ~~I~-~i~~~~~~~~~~~~--~~~~~~gl~~d~~~~~l----------------------------y~~D~~~~~I~r~~  144 (386)
T 3v65_B           96 IDIR-QVLPHRSEYTLLLN--NLENAIALDFHHRRELV----------------------------FWSDVTLDRILRAN  144 (386)
T ss_dssp             SCEE-EECTTSCCCEEEEC--SCSCEEEEEEETTTTEE----------------------------EEEETTTTEEEEEE
T ss_pred             ccce-eeccCCCcEEEEec--CCCccEEEEEecCCCeE----------------------------EEEeCCCCcEEEEe
Confidence            3455 55555444333332  34457788888754433                            23444556788888


Q ss_pred             CCCCcccceeeeeEecccCcCEEEEEEccC-CCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCC
Q 006825          438 KSCKDLTALYKCQEIQAHNGSIWSIKFSLD-GRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPT  516 (630)
Q Consensus       438 ~~~~el~~~~~v~tL~gHt~~V~sVaFSpD-G~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~  516 (630)
                      .......     ..+.........|++.+. ++++++-...+.|.+.++.... ...+.    .........+++.|.+.
T Consensus       145 ~~g~~~~-----~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~-~~~l~----~~~l~~P~giavdp~~g  214 (386)
T 3v65_B          145 LNGSNVE-----EVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAH-RKVLL----WQSLEKPRAIALHPMEG  214 (386)
T ss_dssp             TTSCCEE-----EEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCS-CEEEE----CSSCSCEEEEEEETTTT
T ss_pred             cCCCCcE-----EEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCc-eEEee----cCCCCCCcEEEEEcCCC
Confidence            7655321     112222334567899874 5555666667788888876433 22321    22334567889998755


Q ss_pred             EEEEee-CC-CeeeeecccccccccccccCccccccEEEeCCCCceEEec-cCCCCEEEEEEcCC-Ce-EEEEECCCcEE
Q 006825          517 SLSPKH-LD-NHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQ-GHLDDVLDLSWSKS-QH-LLSSSMDKTVR  591 (630)
Q Consensus       517 ~lasgs-~D-g~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL~-GHs~~V~sLafSPd-~~-LaSgS~DgtVr  591 (630)
                      .|.... .. ..|                       ..+++.|.....+. ..-...+.|+|+|+ +. +++=+..+.|.
T Consensus       215 ~ly~td~~~~~~I-----------------------~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~  271 (386)
T 3v65_B          215 TIYWTDWGNTPRI-----------------------EASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIE  271 (386)
T ss_dssp             EEEEEECSSSCEE-----------------------EEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEE
T ss_pred             eEEEeccCCCCEE-----------------------EEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEE
Confidence            554432 22 334                       34445555444442 22345688999876 44 45556677888


Q ss_pred             EEeCCCCcEEEEEe-cCCceEEEE
Q 006825          592 LWHLSSKTCLKIFS-HSDYDISLV  614 (630)
Q Consensus       592 IWDl~tg~~l~t~~-H~~~V~sVa  614 (630)
                      .+|+........+. .......|+
T Consensus       272 ~~d~dG~~~~~~~~~~~~~P~gia  295 (386)
T 3v65_B          272 RANLDGSHRKAVISQGLPHPFAIT  295 (386)
T ss_dssp             EECTTSCSCEEEECSSCSSEEEEE
T ss_pred             EEeCCCCeeEEEEECCCCCceEEE
Confidence            88876433322232 333444555

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=96.48  E-value=1.1  Score=47.33  Aligned_cols=157  Identities=5%  Similarity=-0.083  Sum_probs=93.6

Q ss_pred             EEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEe--CCCcEEEEECcCCceeeeeecccccCc
Q 006825          425 FHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAG--EDCVIHVWQVVESERKGELLEKQEDGH  502 (630)
Q Consensus       425 ~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS--~DgtIrVWDl~tg~~~~~l~~~~~~gh  502 (630)
                      ++-...+.|.+.+......     ...+.........|++.|.+.+|+-..  ..+.|...++... ....+.    ...
T Consensus       175 ~~d~~~~~I~~~~~~g~~~-----~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~-~~~~~~----~~~  244 (400)
T 3p5b_L          175 WTDSVLGTVSVADTKGVKR-----KTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV-DIYSLV----TEN  244 (400)
T ss_dssp             EEETTTTEEEEECTTTCSE-----EEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSC-SCEEEE----CSS
T ss_pred             EEECCCCeEEEEeCCCCce-----EEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCC-ccEEEE----ECC
Confidence            4445566788887765431     112233344578999999655554443  2367888887543 333331    223


Q ss_pred             ccceEEEEECCCCCEEEEe-eCCCeeeeecccccccccccccCccccccEEEeCCCCceEEec---cCCCCEEEEEEcCC
Q 006825          503 LNMLLLANGSPEPTSLSPK-HLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQ---GHLDDVLDLSWSKS  578 (630)
Q Consensus       503 ~~~V~svafSpdg~~lasg-s~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL~---GHs~~V~sLafSPd  578 (630)
                      ......|++++++..|..+ .....|                       ..+++.|....++.   +.-.....|++..+
T Consensus       245 l~~P~glavd~~~~~lY~aD~~~~~I-----------------------~~~d~dG~~~~~~~~~~~~l~~P~gl~v~~~  301 (400)
T 3p5b_L          245 IQWPNGITLDLLSGRLYWVDSKLHSI-----------------------SSIDVNGGNRKTILEDEKRLAHPFSLAVFED  301 (400)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEE-----------------------EEEETTSCCCEEEEECSSTTSSEEEEEEETT
T ss_pred             CCceEEEEEEeCCCEEEEEECCCCEE-----------------------EEEeCCCCccEEEEeCCCCCCCCEEEEEeCC
Confidence            3566789999876655554 334455                       45555555444442   12334567777555


Q ss_pred             CeEEEEECCCcEEEEeCCCCcEEEEEe-cCCceEEEE
Q 006825          579 QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYDISLV  614 (630)
Q Consensus       579 ~~LaSgS~DgtVrIWDl~tg~~l~t~~-H~~~V~sVa  614 (630)
                      .++++-...+.|..+|..+|+.+.++. .......|+
T Consensus       302 ~lywtd~~~~~V~~~~~~~G~~~~~i~~~~~~p~~i~  338 (400)
T 3p5b_L          302 KVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMV  338 (400)
T ss_dssp             EEEEEESSSCSEEEEESSSCCCCEEEECSCSCEEEEE
T ss_pred             EEEEecCCCCeEEEEEcCCCCceEEEecCCCCCceEE
Confidence            677777788999999988887776665 333455554

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=96.43  E-value=0.35  Score=53.99  Aligned_cols=26  Identities=8%  Similarity=0.103  Sum_probs=21.6

Q ss_pred             ceEeecCCCccEecccCCCCceeEEec
Q 006825          350 NVEEGNKDSFDLNNNGSSGGGMKSKKK  376 (630)
Q Consensus       350 ~laSgS~D~tvr~vWD~~tG~~~~~lk  376 (630)
                      .+..++.|+.+. ..|.+||+.+-+..
T Consensus       117 ~v~v~~~dg~l~-alD~~tG~~~W~~~  142 (571)
T 2ad6_A          117 QIVKKQANGHLL-ALDAKTGKINWEVE  142 (571)
T ss_dssp             EEEEECTTSEEE-EEETTTCCEEEEEE
T ss_pred             EEEEEeCCCEEE-EEECCCCCEEEEec
Confidence            567778889999 99999999887665

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=96.43  E-value=1.1  Score=52.26  Aligned_cols=149  Identities=5%  Similarity=-0.087  Sum_probs=88.8

Q ss_pred             EEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEe-C-CCcEEEEECcCCceeeeeecccccC
Q 006825          424 SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAG-E-DCVIHVWQVVESERKGELLEKQEDG  501 (630)
Q Consensus       424 l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS-~-DgtIrVWDl~tg~~~~~l~~~~~~g  501 (630)
                      +|+-...++|.+.++.....     ...+.........|++.|.+.+|+-.. . ...|.+.++.. .....++    ..
T Consensus       486 Y~tD~~~~~I~v~~ldG~~~-----~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG-~~~~~lv----~~  555 (791)
T 3m0c_C          486 YWTDSVLGTVSVADTKGVKR-----KTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG-VDIYSLV----TE  555 (791)
T ss_dssp             EEEETTTTEEEEEETTSSSE-----EEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTS-CCEEEEE----CS
T ss_pred             EEEecCCCeEEEEeCCCCeE-----EEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCC-CceEEEE----eC
Confidence            34555667888888765431     112233445688999999755554443 2 36788888753 3333332    23


Q ss_pred             cccceEEEEECCCCCEEEEe-eCCCeeeeecccccccccccccCccccccEEEeCCCCceEEecc---CCCCEEEEEEcC
Q 006825          502 HLNMLLLANGSPEPTSLSPK-HLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQG---HLDDVLDLSWSK  577 (630)
Q Consensus       502 h~~~V~svafSpdg~~lasg-s~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL~G---Hs~~V~sLafSP  577 (630)
                      .......|++.+....|..+ .....|                       ..+++.|..+.++..   .-.....|++..
T Consensus       556 ~l~~P~GLavD~~~~~LYwaD~~~~~I-----------------------~~~d~dG~~~~~v~~~~~~l~~P~glav~~  612 (791)
T 3m0c_C          556 NIQWPNGITLDLLSGRLYWVDSKLHSI-----------------------SSIDVNGGNRKTILEDEKRLAHPFSLAVFE  612 (791)
T ss_dssp             SCSCEEEEEEETTTTEEEEEETTTTEE-----------------------EEEETTSCSCEEEEECTTTTSSEEEEEEET
T ss_pred             CCCCceEEEEecCCCeEEEEeCCCCcE-----------------------EEEecCCCceEEEecCCCccCCCCEEEEeC
Confidence            33567789998765555544 333445                       455555555444421   223446777765


Q ss_pred             CCeEEEEECCCcEEEEeCCCCcEEEEEe
Q 006825          578 SQHLLSSSMDKTVRLWHLSSKTCLKIFS  605 (630)
Q Consensus       578 d~~LaSgS~DgtVrIWDl~tg~~l~t~~  605 (630)
                      +.++++-...+.|...|..+|+.+.++.
T Consensus       613 ~~lYwtD~~~~~I~~~dk~tG~~~~~l~  640 (791)
T 3m0c_C          613 DKVFWTDIINEAIFSANRLTGSDVNLLA  640 (791)
T ss_dssp             TEEEEEETTTTEEEEEETTTCCCCEEEE
T ss_pred             CEEEEEECCCCEEEEEeCCCCcceEEee
Confidence            5666677777888888887886666554

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=96.42  E-value=0.16  Score=57.31  Aligned_cols=80  Identities=11%  Similarity=-0.037  Sum_probs=43.1

Q ss_pred             eEEEEcCCCceEeeecceeeecCccceeEEEeec---ceEeec-CCCccEecccCCCCceeEEecCCccCC-EEEEEEcC
Q 006825          316 KKVKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQ---NVEEGN-KDSFDLNNNGSSGGGMKSKKKGSWFKS-IRTVASSV  390 (630)
Q Consensus       316 ~~l~dv~TG~~lt~eef~~l~GHs~~V~~Lafs~---~laSgS-~D~tvr~vWD~~tG~~~~~lk~gH~~~-V~sVAfSp  390 (630)
                      ..++|+.|++...+..+  ...+......+++..   .++.|+ .+..+. +||..+++...... .+..+ --++++.+
T Consensus       221 ~~~yd~~t~~w~~~~~~--~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~-~yd~~t~~W~~~~~-~~~~R~~~s~~~~~  296 (656)
T 1k3i_A          221 TSSWDPSTGIVSDRTVT--VTKHDMFCPGISMDGNGQIVVTGGNDAKKTS-LYDSSSDSWIPGPD-MQVARGYQSSATMS  296 (656)
T ss_dssp             EEEECTTTCCBCCCEEE--ECSCCCSSCEEEECTTSCEEEECSSSTTCEE-EEEGGGTEEEECCC-CSSCCSSCEEEECT
T ss_pred             EEEEeCCCCcEEeCccc--CCCCCCccccccCCCCCCEEEeCCCCCCceE-EecCcCCceeECCC-CCccccccceEEec
Confidence            45677777766533221  122333333445443   456665 456788 99998876544322 22222 12455667


Q ss_pred             CCCeEEeec
Q 006825          391 TGHKERRSS  399 (630)
Q Consensus       391 dG~~lasgS  399 (630)
                      +|+.++.|+
T Consensus       297 dg~iyv~GG  305 (656)
T 1k3i_A          297 DGRVFTIGG  305 (656)
T ss_dssp             TSCEEEECC
T ss_pred             CCeEEEEeC
Confidence            888777665

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=96.33  E-value=0.98  Score=45.34  Aligned_cols=99  Identities=10%  Similarity=0.041  Sum_probs=59.0

Q ss_pred             CEEEEEEccCCCEE-EEEeCCCcEEEEECcC-Ccee-eeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccc
Q 006825          458 SIWSIKFSLDGRYL-ASAGEDCVIHVWQVVE-SERK-GELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGR  534 (630)
Q Consensus       458 ~V~sVaFSpDG~~L-ASgS~DgtIrVWDl~t-g~~~-~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~  534 (630)
                      ....|  ++++++| ++-...+.|.++++.. +... ...+ .  .  ......+++.++|.++++....+.|       
T Consensus       170 ~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~-~--~--~~~P~gi~vd~dG~l~va~~~~~~V-------  235 (306)
T 2p4o_A          170 AANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIF-V--E--QTNIDDFAFDVEGNLYGATHIYNSV-------  235 (306)
T ss_dssp             SEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEE-E--E--SCCCSSEEEBTTCCEEEECBTTCCE-------
T ss_pred             cCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEE-e--c--cCCCCCeEECCCCCEEEEeCCCCeE-------
Confidence            34555  7888755 4455678899999864 3211 1111 0  0  1234467888899887776666666       


Q ss_pred             cccccccccCccccccEEEeCCCCceE--EeccCCCCEEEEEEc---CC-CeEEEEEC
Q 006825          535 SINRKSLSLDHMVVPETVFALSDKPIC--SFQGHLDDVLDLSWS---KS-QHLLSSSM  586 (630)
Q Consensus       535 ~~~~~s~s~d~~i~~~~Vwdlsgk~l~--tL~GHs~~V~sLafS---Pd-~~LaSgS~  586 (630)
                                      .+++..|+...  .+.......++++|.   |+ ++|..+..
T Consensus       236 ----------------~~~~~~G~~~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~~  277 (306)
T 2p4o_A          236 ----------------VRIAPDRSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTN  277 (306)
T ss_dssp             ----------------EEECTTCCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEEC
T ss_pred             ----------------EEECCCCCEEEEeecccccCCceEEEEecccCCCCEEEEECC
Confidence                            55666655432  233334568999998   77 65554443

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=96.05  E-value=1.6  Score=44.66  Aligned_cols=212  Identities=8%  Similarity=-0.042  Sum_probs=108.8

Q ss_pred             cCCEEEEEEcCCCCeEEeecCCC-----CCcc------c--cCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccce
Q 006825          380 FKSIRTVASSVTGHKERRSSDER-----DTSS------E--KGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTAL  446 (630)
Q Consensus       380 ~~~V~sVAfSpdG~~lasgS~D~-----dt~s------~--~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~  446 (630)
                      ...|++|+|.+.+..++.|....     |-+.      .  ......+..+.+.+..++..+..+.|..-.-.....   
T Consensus        35 ~~~~~~v~~~~~~~~~~~G~~g~i~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~g~i~~S~DgG~tW---  111 (327)
T 2xbg_A           35 TATILDMSFIDRHHGWLVGVNATLMETRDGGQTWEPRTLVLDHSDYRFNSVSFQGNEGWIVGEPPIMLHTTDGGQSW---  111 (327)
T ss_dssp             SSCEEEEEESSSSCEEEEETTTEEEEESSTTSSCEECCCCCSCCCCEEEEEEEETTEEEEEEETTEEEEESSTTSSC---
T ss_pred             CCcEEEEEECCCCcEEEEcCCCeEEEeCCCCCCCeECCCCCCCCCccEEEEEecCCeEEEEECCCeEEEECCCCCCc---
Confidence            44688888887777666554321     1110      1  112334555665554454455566555432111111   


Q ss_pred             eeeeEecccCcCEEEEEEccCCCEEEEEeCCCcE-EEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCC
Q 006825          447 YKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVI-HVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDN  525 (630)
Q Consensus       447 ~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtI-rVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg  525 (630)
                      ..+.....+.+.++.|.+.+++++++.+. ++.| +-+|  .|+.-..+    ..+....+..+.+.+++.+++.+. .+
T Consensus       112 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~g~v~~S~D--gG~tW~~~----~~~~~~~~~~~~~~~~~~~~~~g~-~G  183 (327)
T 2xbg_A          112 SQIPLDPKLPGSPRLIKALGNGSAEMITN-VGAIYRTKD--SGKNWQAL----VQEAIGVMRNLNRSPSGEYVAVSS-RG  183 (327)
T ss_dssp             EECCCCTTCSSCEEEEEEEETTEEEEEET-TCCEEEESS--TTSSEEEE----ECSCCCCEEEEEECTTSCEEEEET-TS
T ss_pred             eECccccCCCCCeEEEEEECCCCEEEEeC-CccEEEEcC--CCCCCEEe----ecCCCcceEEEEEcCCCcEEEEEC-CC
Confidence            11111112445688898888888777654 5544 3333  23333222    134445788899999998887764 34


Q ss_pred             eeeeecccccccccccccCccccccEEEeCCCCceEEe-ccCCCCEEEEEEcCCCeEEEEECCCcEEEEeCCCCcEEEEE
Q 006825          526 HLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSF-QGHLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIF  604 (630)
Q Consensus       526 ~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL-~GHs~~V~sLafSPd~~LaSgS~DgtVrIWDl~tg~~l~t~  604 (630)
                      .+.                      +.++..++.-..+ .++...+..+++.+++.++.++.+|.|+++....|+--..+
T Consensus       184 ~~~----------------------~S~d~gG~tW~~~~~~~~~~~~~~~~~~~g~~~~~~~~G~~~~s~~D~G~tW~~~  241 (327)
T 2xbg_A          184 SFY----------------------STWEPGQTAWEPHNRTTSRRLHNMGFTPDGRLWMIVNGGKIAFSDPDNSENWGEL  241 (327)
T ss_dssp             SEE----------------------EEECTTCSSCEEEECCSSSCEEEEEECTTSCEEEEETTTEEEEEETTEEEEECCC
T ss_pred             cEE----------------------EEeCCCCCceeECCCCCCCccceeEECCCCCEEEEeCCceEEEecCCCCCeeEec
Confidence            331                      1111111111111 23456788899988855556667888887753323322222


Q ss_pred             e-----cCCceEEEE-cCCCcEEEEe
Q 006825          605 S-----HSDYDISLV-DRLMLRFAYG  624 (630)
Q Consensus       605 ~-----H~~~V~sVa-s~~~~~lAsg  624 (630)
                      .     +...+.+|+ .+....++.+
T Consensus       242 ~~~~~~~~~~~~~v~~~~~~~~~~~g  267 (327)
T 2xbg_A          242 LSPLRRNSVGFLDLAYRTPNEVWLAG  267 (327)
T ss_dssp             BCTTSSCCSCEEEEEESSSSCEEEEE
T ss_pred             cCCcccCCcceEEEEecCCCEEEEEe
Confidence            1     123466666 4444444444

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=96.02  E-value=1.5  Score=44.05  Aligned_cols=120  Identities=9%  Similarity=0.012  Sum_probs=64.7

Q ss_pred             CCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCccccee
Q 006825          368 GGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALY  447 (630)
Q Consensus       368 tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~  447 (630)
                      +.+.+..+..+  .....++++++|+++++                             -...++|..|+.....     
T Consensus        21 ~~~~~~~~p~~--~~pegia~~~~g~lyv~-----------------------------d~~~~~I~~~d~~g~~-----   64 (306)
T 2p4o_A           21 PAKIITSFPVN--TFLENLASAPDGTIFVT-----------------------------NHEVGEIVSITPDGNQ-----   64 (306)
T ss_dssp             CEEEEEEECTT--CCEEEEEECTTSCEEEE-----------------------------ETTTTEEEEECTTCCE-----
T ss_pred             CceEeEeCCCC--CCcceEEECCCCCEEEE-----------------------------eCCCCeEEEECCCCce-----
Confidence            34445555422  45667888888775432                             2345667888765431     


Q ss_pred             eeeEecccCcCEEEEEEccCCCEEEEEeCC-C-cEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCC
Q 006825          448 KCQEIQAHNGSIWSIKFSLDGRYLASAGED-C-VIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDN  525 (630)
Q Consensus       448 ~v~tL~gHt~~V~sVaFSpDG~~LASgS~D-g-tIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg  525 (630)
                       ...+ .-......|+|.++|+++++.... + .|..++..+++..... .   .........++..+++..+++....+
T Consensus        65 -~~~~-~~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~~~-~---~~~~~~~~g~~~~~~~~~~v~d~~~g  138 (306)
T 2p4o_A           65 -QIHA-TVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLL-T---LPDAIFLNGITPLSDTQYLTADSYRG  138 (306)
T ss_dssp             -EEEE-ECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEE-E---CTTCSCEEEEEESSSSEEEEEETTTT
T ss_pred             -EEEE-eCCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEEEE-e---CCCccccCcccccCCCcEEEEECCCC
Confidence             1111 122458899999999977665433 2 3666677776643221 1   11112233444455555555554556


Q ss_pred             eeee
Q 006825          526 HLEK  529 (630)
Q Consensus       526 ~I~i  529 (630)
                      .|..
T Consensus       139 ~i~~  142 (306)
T 2p4o_A          139 AIWL  142 (306)
T ss_dssp             EEEE
T ss_pred             eEEE
Confidence            6533

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=95.93  E-value=1.3  Score=49.50  Aligned_cols=26  Identities=27%  Similarity=0.156  Sum_probs=21.8

Q ss_pred             ceEeecCCCccEecccCCCCceeEEec
Q 006825          350 NVEEGNKDSFDLNNNGSSGGGMKSKKK  376 (630)
Q Consensus       350 ~laSgS~D~tvr~vWD~~tG~~~~~lk  376 (630)
                      .+..++.|+.+. ..|.+||+.+-+..
T Consensus       119 ~v~~~t~dg~l~-AlD~~TG~~~W~~~  144 (582)
T 1flg_A          119 KVFFGTLDASVV-ALNKNTGKVVWKKK  144 (582)
T ss_dssp             EEEEEETTTEEE-EEESSSCCEEEEEE
T ss_pred             EEEEEeCCCEEE-EEECCCCCEEeeec
Confidence            567778899998 99999999887765

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=95.93  E-value=1  Score=46.26  Aligned_cols=141  Identities=8%  Similarity=-0.052  Sum_probs=80.4

Q ss_pred             EEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEcc-CCCEEEEEeCCCcEEEEECcCCceeeeeecccccCcc
Q 006825          425 FHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSL-DGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHL  503 (630)
Q Consensus       425 ~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSp-DG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~  503 (630)
                      ++-...++|+.++........    ..+.........|++.+ .++++++-...+.|.++++.... ...+.    ....
T Consensus        51 w~D~~~~~I~r~~~~g~~~~~----~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~-~~~l~----~~~~  121 (318)
T 3sov_A           51 WSDVSEEAIKRTEFNKTESVQ----NVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSL-RKVLF----WQEL  121 (318)
T ss_dssp             EEETTTTEEEEEETTSSSCCC----EEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEE----CSSC
T ss_pred             EEECCCCcEEEEEccCCCceE----EEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCc-EEEEE----eCCC
Confidence            444456778888876542111    11222234567899987 55566666677889999986433 23331    2333


Q ss_pred             cceEEEEECCCCCEEEEeeC--CCeeeeecccccccccccccCccccccEEEeCCCCceEEec-cCCCCEEEEEEcCC-C
Q 006825          504 NMLLLANGSPEPTSLSPKHL--DNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQ-GHLDDVLDLSWSKS-Q  579 (630)
Q Consensus       504 ~~V~svafSpdg~~lasgs~--Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL~-GHs~~V~sLafSPd-~  579 (630)
                      .....+++.|.+..|..+..  ...|                       ...++.|.....+. ..-..-+.|+|+|+ +
T Consensus       122 ~~P~giavdp~~g~ly~td~~~~~~I-----------------------~r~~~dG~~~~~~~~~~l~~Pnglavd~~~~  178 (318)
T 3sov_A          122 DQPRAIALDPSSGFMYWTDWGEVPKI-----------------------ERAGMDGSSRFIIINSEIYWPNGLTLDYEEQ  178 (318)
T ss_dssp             SSEEEEEEEGGGTEEEEEECSSSCEE-----------------------EEEETTSCSCEEEECSSCSCEEEEEEETTTT
T ss_pred             CCccEEEEeCCCCEEEEEecCCCCEE-----------------------EEEEcCCCCeEEEEECCCCCccEEEEeccCC
Confidence            45678888886544444432  2344                       33444554444432 22234578888886 4


Q ss_pred             e-EEEEECCCcEEEEeCCC
Q 006825          580 H-LLSSSMDKTVRLWHLSS  597 (630)
Q Consensus       580 ~-LaSgS~DgtVrIWDl~t  597 (630)
                      . +++=+..+.|..+|+..
T Consensus       179 ~lY~aD~~~~~I~~~d~dG  197 (318)
T 3sov_A          179 KLYWADAKLNFIHKSNLDG  197 (318)
T ss_dssp             EEEEEETTTTEEEEEETTS
T ss_pred             EEEEEECCCCEEEEEcCCC
Confidence            4 44555677888888764

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=95.91  E-value=0.54  Score=53.01  Aligned_cols=25  Identities=12%  Similarity=-0.036  Sum_probs=21.1

Q ss_pred             eEeecCCCccEecccCCCCceeEEec
Q 006825          351 VEEGNKDSFDLNNNGSSGGGMKSKKK  376 (630)
Q Consensus       351 laSgS~D~tvr~vWD~~tG~~~~~lk  376 (630)
                      +..++.|+.+. ..|..||+.+-+..
T Consensus       124 V~v~t~dg~l~-AlDa~TG~~~W~~~  148 (599)
T 1w6s_A          124 ILKTQLDGNVA-ALNAETGETVWKVE  148 (599)
T ss_dssp             EEEECTTSEEE-EEETTTCCEEEEEE
T ss_pred             EEEEcCCCEEE-EEECCCCCEEEeec
Confidence            77788899998 89999999887665

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=95.89  E-value=1.8  Score=43.98  Aligned_cols=180  Identities=6%  Similarity=-0.089  Sum_probs=101.1

Q ss_pred             CccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCcEEEEEe
Q 006825          358 SFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYG  437 (630)
Q Consensus       358 ~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd  437 (630)
                      ..|+ .-|+.+++....+.  ......+++|.+.+..+.                            ++-...++|+.++
T Consensus        10 ~~I~-~i~~~~~~~~~~~~--~~~~p~g~~~d~~~~~ly----------------------------~~D~~~~~I~~~~   58 (316)
T 1ijq_A           10 HEVR-KMTLDRSEYTSLIP--NLRNVVALDTEVASNRIY----------------------------WSDLSQRMICSTQ   58 (316)
T ss_dssp             SSEE-EEETTSCCCEEEEC--SCSSEEEEEEETTTTEEE----------------------------EEETTTTEEEEEE
T ss_pred             CeEE-EEECCCcceEehhc--CCCceEEEEEEeCCCEEE----------------------------EEECCCCcEEEEE
Confidence            3455 55666665444433  355677888887654332                            3444456788787


Q ss_pred             CCCCcccceeeeeEecccCcCEEEEEEccC-CCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCC
Q 006825          438 KSCKDLTALYKCQEIQAHNGSIWSIKFSLD-GRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPT  516 (630)
Q Consensus       438 ~~~~el~~~~~v~tL~gHt~~V~sVaFSpD-G~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~  516 (630)
                      ........ .....+.........|++.+. +++.++-...+.|.+.++.... ...+.    .........+++.|.+.
T Consensus        59 ~~g~~~~~-~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~-~~~~~----~~~~~~P~~iavdp~~g  132 (316)
T 1ijq_A           59 LDRAHGVS-SYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK-RKTLF----RENGSKPRAIVVDPVHG  132 (316)
T ss_dssp             C---------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSS-EEEEE----ECTTCCEEEEEEETTTT
T ss_pred             CCCCCCCc-ccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCc-eEEEE----ECCCCCcceEEeCCCCC
Confidence            65410000 001112222345678999874 4555665678899999986433 33332    22234567889998655


Q ss_pred             EEEEeeCC--CeeeeecccccccccccccCccccccEEEeCCCCceEEec-cCCCCEEEEEEcCC-CeE-EEEECCCcEE
Q 006825          517 SLSPKHLD--NHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQ-GHLDDVLDLSWSKS-QHL-LSSSMDKTVR  591 (630)
Q Consensus       517 ~lasgs~D--g~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL~-GHs~~V~sLafSPd-~~L-aSgS~DgtVr  591 (630)
                      .+..+...  +.|                       ..+++.|.....+. ..-...+.|+|+|+ +.| ++-+..+.|.
T Consensus       133 ~ly~~d~~~~~~I-----------------------~~~~~dG~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~  189 (316)
T 1ijq_A          133 FMYWTDWGTPAKI-----------------------KKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSIS  189 (316)
T ss_dssp             EEEEEECSSSCEE-----------------------EEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEE
T ss_pred             EEEEEccCCCCeE-----------------------EEEcCCCCCeEEEEECCCCCceEEEEeccCCEEEEEECCCCeEE
Confidence            44443322  344                       34445555555442 22345688999987 544 4555677899


Q ss_pred             EEeCCC
Q 006825          592 LWHLSS  597 (630)
Q Consensus       592 IWDl~t  597 (630)
                      .+|+..
T Consensus       190 ~~d~dg  195 (316)
T 1ijq_A          190 SIDVNG  195 (316)
T ss_dssp             EEETTS
T ss_pred             EEecCC
Confidence            999864

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=95.56  E-value=0.048  Score=62.68  Aligned_cols=157  Identities=4%  Similarity=-0.086  Sum_probs=87.1

Q ss_pred             EEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEe-CC-CcEEEEECcCCceeeeeecccccCc
Q 006825          425 FHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAG-ED-CVIHVWQVVESERKGELLEKQEDGH  502 (630)
Q Consensus       425 ~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS-~D-gtIrVWDl~tg~~~~~l~~~~~~gh  502 (630)
                      ++-...++|.+++......     ...+.........|++.|.+.+|+.+. .. +.|.+.++.. .....+.    ...
T Consensus       469 ~tD~~~~~I~v~d~dg~~~-----~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG-~~~~~l~----~~~  538 (699)
T 1n7d_A          469 WTDSVLGTVSVADTKGVKR-----KTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG-VDIYSLV----TEN  538 (699)
T ss_dssp             ECCTTTSCEEEEBSSSCCE-----EEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSS-CCCCEES----CSS
T ss_pred             EEeccCCeEEEEecCCCce-----EEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCC-CCeeEEE----eCC
Confidence            4444556788887765421     111222223457889998655444333 22 6777777643 2222221    122


Q ss_pred             ccceEEEEECCCC-CEEEEeeCCCeeeeecccccccccccccCccccccEEEeCCCCceEEecc---CCCCEEEEEEcCC
Q 006825          503 LNMLLLANGSPEP-TSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQG---HLDDVLDLSWSKS  578 (630)
Q Consensus       503 ~~~V~svafSpdg-~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL~G---Hs~~V~sLafSPd  578 (630)
                      ......|+++|++ +++++-.....|                       .++++.|....++..   .......|++..+
T Consensus       539 l~~PnGlavd~~~~~LY~aD~~~~~I-----------------------~~~d~dG~~~~~~~~~~~~~~~P~glavd~~  595 (699)
T 1n7d_A          539 IQWPNGITLDLLSGRLYWVDSKLHSI-----------------------SSIDVNGGNRKTILEDEKRLAHPFSLAVFED  595 (699)
T ss_dssp             CSSCCCEEECTTTCCEEEEETTTTEE-----------------------EEECSSSSCCEEECCCSSSCSSCCCCEEETT
T ss_pred             CCCccEEEEeccCCEEEEEecCCCeE-----------------------EEEccCCCceEEEEecCCcCCCceEeEEECC
Confidence            2345678999874 455554455555                       445554444444321   1123345666555


Q ss_pred             CeEEEEECCCcEEEEeCCCCcEEEEEe-cCCceEEEE
Q 006825          579 QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYDISLV  614 (630)
Q Consensus       579 ~~LaSgS~DgtVrIWDl~tg~~l~t~~-H~~~V~sVa  614 (630)
                      .++++....+.|..++..+|+.+.++. ....++.|+
T Consensus       596 ~lywtd~~~~~V~~~d~~~G~~~~~i~~~~~~P~~i~  632 (699)
T 1n7d_A          596 KVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMV  632 (699)
T ss_dssp             EEEEECSTTTCEEEEETTTEEEEECCCTTCSSCCCCC
T ss_pred             EEEEEeCCCCeEEEEEccCCCceEEeecCCCCCcEEE
Confidence            666777778999999998998888775 333344444

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=95.48  E-value=3.4  Score=44.28  Aligned_cols=165  Identities=10%  Similarity=-0.028  Sum_probs=87.0

Q ss_pred             CccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCC----------CccccCC-----cceEEEeecCC-
Q 006825          358 SFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERD----------TSSEKGG-----RRSSSATDDSQ-  421 (630)
Q Consensus       358 ~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~d----------t~s~~gh-----~~~Vsa~~~s~-  421 (630)
                      ..|+ .+|..+|..... . +-......|||+++|+++++-.....          .......     -..-..+++.+ 
T Consensus       162 ~~I~-~id~~~g~v~~~-~-~~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~~~~~~~~~~~~~P~giavd~~  238 (433)
T 4hw6_A          162 DAFR-HVDFVNQYVDIK-T-TNIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASGFTERLSLCNARGAKTCAVHPQ  238 (433)
T ss_dssp             SCEE-EEETTTTEEEEE-C-CCCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGTTCCEEEEEECSSBCCCEECTT
T ss_pred             CCEE-EEECCCCEEEEe-e-cCCCCccEEEECCCCCEEEEcCCCCcccceEEEEECCCCeeccccccccCCCCEEEEeCC
Confidence            6777 778777765443 3 45667889999999996666432210          0001000     00011123333 


Q ss_pred             Ce-EE-EecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCC-EEEEEeCCCcEEEEECc--CCcee--eee
Q 006825          422 DV-SF-HGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGR-YLASAGEDCVIHVWQVV--ESERK--GEL  494 (630)
Q Consensus       422 d~-l~-Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~-~LASgS~DgtIrVWDl~--tg~~~--~~l  494 (630)
                      .+ ++ +-...+.|+.++..++....  .+... +....-..|+|+|+|+ ++++-...+.|+.+++.  ++...  ..+
T Consensus       239 ~G~lyv~d~~~~~V~~~d~~~g~~~~--~~~~~-~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~  315 (433)
T 4hw6_A          239 NGKIYYTRYHHAMISSYDPATGTLTE--EEVMM-DTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIV  315 (433)
T ss_dssp             TCCEEECBTTCSEEEEECTTTCCEEE--EEEEC-SCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEE
T ss_pred             CCeEEEEECCCCEEEEEECCCCeEEE--EEecc-CCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEE
Confidence            33 43 44456788888876554310  01111 1122335799999999 44555566889998865  22211  111


Q ss_pred             ecc-cccC---------cccceEEEEE---------CCCCCEEEEeeCCCeee
Q 006825          495 LEK-QEDG---------HLNMLLLANG---------SPEPTSLSPKHLDNHLE  528 (630)
Q Consensus       495 ~~~-~~~g---------h~~~V~svaf---------Spdg~~lasgs~Dg~I~  528 (630)
                      ... ...+         .......+++         .+++.++++-.....|+
T Consensus       316 ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~  368 (433)
T 4hw6_A          316 CGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVR  368 (433)
T ss_dssp             EECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEE
T ss_pred             EecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEE
Confidence            100 0011         1223456888         67777777766666664

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=95.33  E-value=4.1  Score=47.47  Aligned_cols=145  Identities=6%  Similarity=-0.111  Sum_probs=79.6

Q ss_pred             EEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCC-CEEEEEeCCCcEEEEECcCCceeeeeecccccCcc
Q 006825          425 FHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDG-RYLASAGEDCVIHVWQVVESERKGELLEKQEDGHL  503 (630)
Q Consensus       425 ~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG-~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~  503 (630)
                      ++-...++|+.+++....... .....+.........|++.+.+ +++++-...+.|.+.++.... ...++    ....
T Consensus       440 ~sD~~~~~I~~~~l~g~~~~~-~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~-~~~l~----~~~l  513 (791)
T 3m0c_C          440 WSDLSQRMICSTQLDRAHGVS-SYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK-RKTLF----RENG  513 (791)
T ss_dssp             EEETTTTEEEEEEC---------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSS-EEEEE----ECTT
T ss_pred             EeeccceeEEEEeccCCCCCc-ceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCCCe-EEEEE----eCCC
Confidence            444455677777765421100 0112233344567789999866 455566677899999986443 33432    2233


Q ss_pred             cceEEEEECCCCCEEEEee-CC-CeeeeecccccccccccccCccccccEEEeCCCCceEEecc-CCCCEEEEEEcCC-C
Q 006825          504 NMLLLANGSPEPTSLSPKH-LD-NHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQG-HLDDVLDLSWSKS-Q  579 (630)
Q Consensus       504 ~~V~svafSpdg~~lasgs-~D-g~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL~G-Hs~~V~sLafSPd-~  579 (630)
                      .....|++.|...+|.... .. ..|                       .+.++.|..+.++.. .-...+.|++.+. +
T Consensus       514 ~~P~gIaVDp~~g~LYwtD~g~~~~I-----------------------~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~  570 (791)
T 3m0c_C          514 SKPRAIVVDPVHGFMYWTDWGTPAKI-----------------------KKGGLNGVDIYSLVTENIQWPNGITLDLLSG  570 (791)
T ss_dssp             CCEEEEEEETTTTEEEEEECSSSCEE-----------------------EEEETTSCCEEEEECSSCSCEEEEEEETTTT
T ss_pred             CCcceEEEecCCCCEEEecCCCCCeE-----------------------EEEecCCCceEEEEeCCCCCceEEEEecCCC
Confidence            4577899998754444432 22 344                       344455555544432 2245677888865 4


Q ss_pred             eEE-EEECCCcEEEEeCCCC
Q 006825          580 HLL-SSSMDKTVRLWHLSSK  598 (630)
Q Consensus       580 ~La-SgS~DgtVrIWDl~tg  598 (630)
                      .|. +=...+.|...++...
T Consensus       571 ~LYwaD~~~~~I~~~d~dG~  590 (791)
T 3m0c_C          571 RLYWVDSKLHSISSIDVNGG  590 (791)
T ss_dssp             EEEEEETTTTEEEEEETTSC
T ss_pred             eEEEEeCCCCcEEEEecCCC
Confidence            443 4345567777777543

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=95.31  E-value=2.7  Score=42.13  Aligned_cols=210  Identities=14%  Similarity=0.068  Sum_probs=107.5

Q ss_pred             eecCccceeEEEeec---ceEe-ecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccccCC
Q 006825          335 CVGHSPIVQELMRRQ---NVEE-GNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGG  410 (630)
Q Consensus       335 l~GHs~~V~~Lafs~---~laS-gS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh  410 (630)
                      +.|-..-+..|++.|   .|.+ ...++.+. .-|.. |+.++++..+-..-.-.|++.++|.+.++.  ++      . 
T Consensus        22 l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~-~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~--E~------~-   90 (255)
T 3qqz_A           22 IAGITNNISSLTWSAQSNTLFSTINKPAAIV-EMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISD--ER------D-   90 (255)
T ss_dssp             CTTCCSCEEEEEEETTTTEEEEEEETTEEEE-EEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEE--TT------T-
T ss_pred             CCCcccCcceeEEeCCCCEEEEEECCCCeEE-EEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEE--CC------C-
Confidence            344444577777776   2332 33355555 55665 777777653334567778888887765431  10      0 


Q ss_pred             cceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcC---
Q 006825          411 RRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVE---  487 (630)
Q Consensus       411 ~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~t---  487 (630)
                       ..+.        ++.-..++.+++-+..  .+    ... ...+......|+|+|.++.|.++.+-....||.+..   
T Consensus        91 -~~l~--------~~~v~~~~~i~~~~~~--~~----~~~-~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~  154 (255)
T 3qqz_A           91 -YAIY--------VISLTPNSEVKILKKI--KI----PLQ-ESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLS  154 (255)
T ss_dssp             -TEEE--------EEEECTTCCEEEEEEE--EC----CCS-SCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTC
T ss_pred             -CcEE--------EEEcCCCCeeeeeeee--cc----ccc-cccccCCcceEEEeCCCCEEEEEECcCCceEEEEccccc
Confidence             0111        1222222222111100  00    000 012345579999999998777777766666766641   


Q ss_pred             Cceeeeeeccc--ccCcccceEEEEECCCCC-EEEEeeCCCeeeeecccccccccccccCccccccEEEeCCCCceEEec
Q 006825          488 SERKGELLEKQ--EDGHLNMLLLANGSPEPT-SLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQ  564 (630)
Q Consensus       488 g~~~~~l~~~~--~~gh~~~V~svafSpdg~-~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL~  564 (630)
                      ...+..+....  ...+...+..++++|... +++.......+                       .+++..|+.+..+.
T Consensus       155 ~~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L-----------------------~~~d~~g~~~~~~~  211 (255)
T 3qqz_A          155 SNELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRAL-----------------------QEVTLVGEVIGEMS  211 (255)
T ss_dssp             SSCCEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEE-----------------------EEECTTCCEEEEEE
T ss_pred             CCceeeecchhhccccccCCceeEEEcCCCCeEEEEECCCCeE-----------------------EEEcCCCCEEEEEE
Confidence            11111111000  011233467899999844 44444444444                       45556666544432


Q ss_pred             ---cC------CCCEEEEEEcCCCeEEEEECCCcEEEEe
Q 006825          565 ---GH------LDDVLDLSWSKSQHLLSSSMDKTVRLWH  594 (630)
Q Consensus       565 ---GH------s~~V~sLafSPd~~LaSgS~DgtVrIWD  594 (630)
                         |.      -..-..|+|.+++.|.-.|.-.-++.+.
T Consensus       212 L~~g~~~l~~~~~qpEGia~d~~G~lyIvsE~n~~y~f~  250 (255)
T 3qqz_A          212 LTKGSRGLSHNIKQAEGVAMDASGNIYIVSEPNRFYRFT  250 (255)
T ss_dssp             CSTTGGGCSSCCCSEEEEEECTTCCEEEEETTTEEEEEE
T ss_pred             cCCccCCcccccCCCCeeEECCCCCEEEEcCCceEEEEE
Confidence               21      1255889999994444447776555554

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=95.30  E-value=3  Score=42.54  Aligned_cols=224  Identities=11%  Similarity=-0.021  Sum_probs=116.2

Q ss_pred             ccceeEEEeec-ceEeecCCCccEecccCCCCceeEEecC--CccCCEEEEEEcCCCCeEEeecCCC-----CCcc----
Q 006825          339 SPIVQELMRRQ-NVEEGNKDSFDLNNNGSSGGGMKSKKKG--SWFKSIRTVASSVTGHKERRSSDER-----DTSS----  406 (630)
Q Consensus       339 s~~V~~Lafs~-~laSgS~D~tvr~vWD~~tG~~~~~lk~--gH~~~V~sVAfSpdG~~lasgS~D~-----dt~s----  406 (630)
                      ...+..|+|.+ .+..++.++.+. . ....|+.-..+..  .+...+..|++.+++..++.+....     |-+.    
T Consensus        79 ~~~~~~i~~~~~~~~~~g~~g~i~-~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~v~~S~DgG~tW~~  156 (327)
T 2xbg_A           79 DYRFNSVSFQGNEGWIVGEPPIML-H-TTDGGQSWSQIPLDPKLPGSPRLIKALGNGSAEMITNVGAIYRTKDSGKNWQA  156 (327)
T ss_dssp             CCEEEEEEEETTEEEEEEETTEEE-E-ESSTTSSCEECCCCTTCSSCEEEEEEEETTEEEEEETTCCEEEESSTTSSEEE
T ss_pred             CccEEEEEecCCeEEEEECCCeEE-E-ECCCCCCceECccccCCCCCeEEEEEECCCCEEEEeCCccEEEEcCCCCCCEE
Confidence            34577788877 222233344333 1 1223444333321  2334577788877777666554322     1111    


Q ss_pred             -ccCCcceEEEeecCCCe-EEEecCCcEE-EEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEE
Q 006825          407 -EKGGRRSSSATDDSQDV-SFHGQERVRV-RQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVW  483 (630)
Q Consensus       407 -~~gh~~~Vsa~~~s~d~-l~Sgs~Dg~V-riWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVW  483 (630)
                       ..+....+..+.+.+++ ++..+..+.+ +.+|.......   .+  -..+...+..|.+.+++++++ ++.+|.|+++
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~gG~tW~---~~--~~~~~~~~~~~~~~~~g~~~~-~~~~G~~~~s  230 (327)
T 2xbg_A          157 LVQEAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEPGQTAWE---PH--NRTTSRRLHNMGFTPDGRLWM-IVNGGKIAFS  230 (327)
T ss_dssp             EECSCCCCEEEEEECTTSCEEEEETTSSEEEEECTTCSSCE---EE--ECCSSSCEEEEEECTTSCEEE-EETTTEEEEE
T ss_pred             eecCCCcceEEEEEcCCCcEEEEECCCcEEEEeCCCCCcee---EC--CCCCCCccceeEECCCCCEEE-EeCCceEEEe
Confidence             22333455666666555 4433344443 33442112111   11  124556789999999998665 5568888887


Q ss_pred             ECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeCCCCceEEe
Q 006825          484 QVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSF  563 (630)
Q Consensus       484 Dl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL  563 (630)
                      +...++.-..+. .........+..+.+.+++.+++.+. ++.+....            |           .|+.-..+
T Consensus       231 ~~D~G~tW~~~~-~~~~~~~~~~~~v~~~~~~~~~~~g~-~g~i~~S~------------D-----------gG~tW~~~  285 (327)
T 2xbg_A          231 DPDNSENWGELL-SPLRRNSVGFLDLAYRTPNEVWLAGG-AGALLCSQ------------D-----------GGQTWQQD  285 (327)
T ss_dssp             ETTEEEEECCCB-CTTSSCCSCEEEEEESSSSCEEEEES-TTCEEEES------------S-----------TTSSCEEC
T ss_pred             cCCCCCeeEecc-CCcccCCcceEEEEecCCCEEEEEeC-CCeEEEeC------------C-----------CCcccEEc
Confidence            533233322221 00001223578899998888777764 55442111            1           11111112


Q ss_pred             c---cCCCCEEEEEEcCCCeEEEEECCCcEEEEeC
Q 006825          564 Q---GHLDDVLDLSWSKSQHLLSSSMDKTVRLWHL  595 (630)
Q Consensus       564 ~---GHs~~V~sLafSPd~~LaSgS~DgtVrIWDl  595 (630)
                      .   .+...+.+|.|.+++.++.++.+|+|.-++-
T Consensus       286 ~~~~~~~~~~~~v~~~~~~~~~~~G~~G~i~~~~~  320 (327)
T 2xbg_A          286 VDVKKVPSNFYKILFFSPDQGFILGQKGILLRYVT  320 (327)
T ss_dssp             GGGTTSSSCCCEEEEEETTEEEEECSTTEEEEECC
T ss_pred             CccCCCCCCeEEEEEECCCceEEEcCCceEEEEcC
Confidence            1   2345678888876667778888998877654

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=95.22  E-value=1.9  Score=45.53  Aligned_cols=195  Identities=14%  Similarity=0.159  Sum_probs=112.4

Q ss_pred             cCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCe-EEEecC--Cc
Q 006825          355 NKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDV-SFHGQE--RV  431 (630)
Q Consensus       355 S~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~-l~Sgs~--Dg  431 (630)
                      ...+.+. ++|+ +|+.++.+..   +.++.|..-|+- .+             ++..        .+. +++--.  +.
T Consensus        47 ~k~~gL~-Vydl-~G~~l~~~~~---g~~nnVD~r~~~-~l-------------~g~~--------~dla~as~R~~~~n   99 (355)
T 3amr_A           47 NKKSGLV-VYSL-DGKMLHSYNT---GKLNNVDIRYDF-PL-------------NGKK--------VDIAAASNRSEGKN   99 (355)
T ss_dssp             ETTTEEE-EEET-TSCEEEEECC---SCEEEEEEEEEE-EE-------------TTEE--------EEEEEEEECSTTCC
T ss_pred             cCCCCEE-EEcC-CCcEEEEccC---CCcccEEEeccc-cc-------------CCce--------EeEEEEeCCCCCCC
Confidence            3445677 9999 8999988873   456666665521 00             0000        011 233334  57


Q ss_pred             EEEEEeC--CCCcccceeee-eEecccCcCEEEEEE--ccC-CC-EEEEEeCCCcEEEEECc---C----Cceeeeeecc
Q 006825          432 RVRQYGK--SCKDLTALYKC-QEIQAHNGSIWSIKF--SLD-GR-YLASAGEDCVIHVWQVV---E----SERKGELLEK  497 (630)
Q Consensus       432 ~VriWd~--~~~el~~~~~v-~tL~gHt~~V~sVaF--SpD-G~-~LASgS~DgtIrVWDl~---t----g~~~~~l~~~  497 (630)
                      +|++|++  .++++...... +.+..-...++.+++  +|. ++ +++....++.+..|++.   .    .+.++++.  
T Consensus       100 ~l~vf~iDp~~~~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~--  177 (355)
T 3amr_A          100 TIEIYAIDGKNGTLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFK--  177 (355)
T ss_dssp             EEEEEEECTTTCCEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEE--
T ss_pred             eEEEEEECCCCCceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEec--
Confidence            8999965  34432211000 001011156777888  774 54 68888899999999993   2    23344432  


Q ss_pred             cccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeCC------CCceEEe-ccCC-CC
Q 006825          498 QEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALS------DKPICSF-QGHL-DD  569 (630)
Q Consensus       498 ~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdls------gk~l~tL-~GHs-~~  569 (630)
                        .  ...+..+...+....|..+-.+.-|  |.                     ++..      ++.+..+ .+|- ..
T Consensus       178 --l--gsq~EgcvvDd~~g~Lyv~eEd~GI--w~---------------------~da~p~~~~~~~~v~~~~~g~l~aD  230 (355)
T 3amr_A          178 --M--NSQTEGMAADDEYGRLYIAEEDEAI--WK---------------------FSAEPDGGSNGTVIDRADGRHLTRD  230 (355)
T ss_dssp             --C--SSCEEEEEEETTTTEEEEEETTTEE--EE---------------------EECSTTSCSCCEEEEEBSSSSBCSC
T ss_pred             --C--CCCcceEEEcCCCCeEEEecccceE--EE---------------------EeCCcCCCCCceEEEEecCCccccC
Confidence              1  2356677788777777777666433  21                     2211      2334333 2333 37


Q ss_pred             EEEEEEc--CC--CeEEEEE-CCCcEEEEeCC-CCcEEEEEe
Q 006825          570 VLDLSWS--KS--QHLLSSS-MDKTVRLWHLS-SKTCLKIFS  605 (630)
Q Consensus       570 V~sLafS--Pd--~~LaSgS-~DgtVrIWDl~-tg~~l~t~~  605 (630)
                      +..|++-  ++  +||+.++ .+.+..+||.. +.+.+..|.
T Consensus       231 vEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg~f~  272 (355)
T 3amr_A          231 IEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVADFR  272 (355)
T ss_dssp             EEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEEE
T ss_pred             cceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEEEEE
Confidence            8888884  44  4777666 67899999997 788888885

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=94.86  E-value=4.7  Score=42.54  Aligned_cols=180  Identities=6%  Similarity=-0.089  Sum_probs=100.1

Q ss_pred             ccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCcEEEEEeC
Q 006825          359 FDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGK  438 (630)
Q Consensus       359 tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~  438 (630)
                      .|+ .-++.+...... . .....+.+|+|.+.+..|.                            ++-...++|+.++.
T Consensus        93 ~I~-~i~l~~~~~~~~-~-~~~~~~~~l~~d~~~~~ly----------------------------wsD~~~~~I~~~~~  141 (400)
T 3p5b_L           93 EVR-KMTLDRSEYTSL-I-PNLRNVVALDTEVASNRIY----------------------------WSDLSQRMICSTQL  141 (400)
T ss_dssp             EEE-EECTTSCSCEEE-E-CSCSCEEEEEEETTTTEEE----------------------------EEETTTTEEEEEEC
T ss_pred             eeE-EEccCCcceeEe-c-cccCcceEEeeeeccCceE----------------------------EEecCCCeEEEEEc
Confidence            344 344544333322 2 3466778889988544332                            33344566777776


Q ss_pred             CCCcccceeeeeEecccCcCEEEEEEcc-CCCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCE
Q 006825          439 SCKDLTALYKCQEIQAHNGSIWSIKFSL-DGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTS  517 (630)
Q Consensus       439 ~~~el~~~~~v~tL~gHt~~V~sVaFSp-DG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~  517 (630)
                      ...... ......+.........|++.+ .+++.++-...+.|.+.++.... ...++    .........|++.|.+.+
T Consensus       142 ~g~~~~-~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~-~~~l~----~~~~~~P~~iavdp~~g~  215 (400)
T 3p5b_L          142 DRAHGV-SSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK-RKTLF----RENGSKPRAIVVDPVHGF  215 (400)
T ss_dssp             -------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCS-EEEEE----ECSSCCEEEEEEETTTTE
T ss_pred             ccCCCC-CcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCCCc-eEEEE----eCCCCCcceEEEecccCe
Confidence            542100 001122333445678999998 55566666677889999986543 33332    223345678999986555


Q ss_pred             EEEeeC--CCeeeeecccccccccccccCccccccEEEeCCCCceEEec-cCCCCEEEEEEcCC-CeE-EEEECCCcEEE
Q 006825          518 LSPKHL--DNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQ-GHLDDVLDLSWSKS-QHL-LSSSMDKTVRL  592 (630)
Q Consensus       518 lasgs~--Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL~-GHs~~V~sLafSPd-~~L-aSgS~DgtVrI  592 (630)
                      |.....  ...|                       ...++.|.....+. ..-...+.|+|.++ +.| ++=...+.|..
T Consensus       216 ly~td~~~~~~I-----------------------~~~~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~  272 (400)
T 3p5b_L          216 MYWTDWGTPAKI-----------------------KKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISS  272 (400)
T ss_dssp             EEEEECSSSCCE-----------------------EEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEE
T ss_pred             EEEEeCCCCCEE-----------------------EEEeCCCCccEEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEE
Confidence            544322  1334                       44455555544442 23356788999987 544 44456778888


Q ss_pred             EeCCCC
Q 006825          593 WHLSSK  598 (630)
Q Consensus       593 WDl~tg  598 (630)
                      .|+...
T Consensus       273 ~d~dG~  278 (400)
T 3p5b_L          273 IDVNGG  278 (400)
T ss_dssp             EETTSC
T ss_pred             EeCCCC
Confidence            888644

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=94.60  E-value=0.85  Score=48.91  Aligned_cols=131  Identities=8%  Similarity=-0.018  Sum_probs=77.4

Q ss_pred             cEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeC-CC---cEEEEECcCCcee--eeeecccccCccc
Q 006825          431 VRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGE-DC---VIHVWQVVESERK--GELLEKQEDGHLN  504 (630)
Q Consensus       431 g~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~-Dg---tIrVWDl~tg~~~--~~l~~~~~~gh~~  504 (630)
                      ..|+.++...+.+      ..+.........|+|+++|++|+.+.. .+   ...+|-...+...  ..+.      ...
T Consensus       159 ~~I~~id~~~~~v------~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g~~~~~~~l~------~~~  226 (430)
T 3tc9_A          159 HPTRLIDFEKEYV------STVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRESGFKVITELT------KGQ  226 (430)
T ss_dssp             EEEEEEETTTTEE------EEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGGTSCSEEEEE------ECS
T ss_pred             CcEEEEECCCCEE------EEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCCceeeeeeec------cCC
Confidence            6788898876543      233334556889999999995555543 22   2233333333322  1211      123


Q ss_pred             ceEEEEECC-CCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeCCCCceEEec--cCCCCEEEEEEcCC-C-
Q 006825          505 MLLLANGSP-EPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQ--GHLDDVLDLSWSKS-Q-  579 (630)
Q Consensus       505 ~V~svafSp-dg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL~--GHs~~V~sLafSPd-~-  579 (630)
                      ....++++| ++.++++-...+.|                       ..++..+..+..+.  +....-..|+|+|+ + 
T Consensus       227 ~p~giavdp~~g~lyv~d~~~~~V-----------------------~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~  283 (430)
T 3tc9_A          227 NCNGAETHPINGELYFNSWNAGQV-----------------------FRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNY  283 (430)
T ss_dssp             SCCCEEECTTTCCEEEEETTTTEE-----------------------EEEETTTTEEEEEEECSSSSCCEEEEECTTSSE
T ss_pred             CceEEEEeCCCCEEEEEECCCCEE-----------------------EEEECCCCcEEEEEEcCCCCcceeEEEcCCCCE
Confidence            345678899 67777776666666                       44555433331221  11234578999999 6 


Q ss_pred             eEEEEECCCcEEEEeCC
Q 006825          580 HLLSSSMDKTVRLWHLS  596 (630)
Q Consensus       580 ~LaSgS~DgtVrIWDl~  596 (630)
                      ++++-...+.|..++..
T Consensus       284 lyv~d~~~~~I~~~~~d  300 (430)
T 3tc9_A          284 AYIVVVNQHYILRSDYD  300 (430)
T ss_dssp             EEEEETTTTEEEEEEEE
T ss_pred             EEEEECCCCEEEEEeCC
Confidence            55666678899998764

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=94.58  E-value=0.9  Score=51.19  Aligned_cols=124  Identities=10%  Similarity=-0.004  Sum_probs=72.0

Q ss_pred             EEEEcC-CCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEe-cccCcCEEEE
Q 006825          385 TVASSV-TGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEI-QAHNGSIWSI  462 (630)
Q Consensus       385 sVAfSp-dG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL-~gHt~~V~sV  462 (630)
                      ++++.+ +|+.++.|+.+.+...  +.          ..      ....+.+||..+++...+.   .+ ..+.....++
T Consensus       190 ~~av~~~~g~l~v~GG~~~~~~~--~~----------~~------~~~~~~~yd~~t~~w~~~~---~~~~~~~~~~~~~  248 (656)
T 1k3i_A          190 AAAIEPTSGRVLMWSSYRNDAFG--GS----------PG------GITLTSSWDPSTGIVSDRT---VTVTKHDMFCPGI  248 (656)
T ss_dssp             EEEEETTTTEEEEEEECCCTTTC--SC----------CC------SEEEEEEECTTTCCBCCCE---EEECSCCCSSCEE
T ss_pred             eEEEEecCCEEEEEecccccccc--cC----------CC------CeEEEEEEeCCCCcEEeCc---ccCCCCCCccccc
Confidence            467777 8888877765431100  00          00      0114788998887654332   22 2344444567


Q ss_pred             EEccCCCEEEEEeC-CCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEee-CC-----Ceeeeeccc
Q 006825          463 KFSLDGRYLASAGE-DCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKH-LD-----NHLEKKRRG  533 (630)
Q Consensus       463 aFSpDG~~LASgS~-DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs-~D-----g~I~i~~~~  533 (630)
                      ++..+|++++.||. +..+.+||..+..-... .  ... ....-..++..+++++++.|+ .+     ..+.+++..
T Consensus       249 ~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~-~--~~~-~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~  322 (656)
T 1k3i_A          249 SMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPG-P--DMQ-VARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPS  322 (656)
T ss_dssp             EECTTSCEEEECSSSTTCEEEEEGGGTEEEEC-C--CCS-SCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETT
T ss_pred             cCCCCCCEEEeCCCCCCceEEecCcCCceeEC-C--CCC-ccccccceEEecCCeEEEEeCcccCCcccccceEeCCC
Confidence            88899999999984 46899999987643221 0  011 111123456667999999988 34     245555543

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=94.52  E-value=8  Score=43.62  Aligned_cols=190  Identities=7%  Similarity=-0.037  Sum_probs=104.6

Q ss_pred             cccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCc
Q 006825          363 NNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKD  442 (630)
Q Consensus       363 vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~e  442 (630)
                      .=++.+......+.....+...+|+|.+.+..+                            .++-...++|+.++.....
T Consensus        19 ~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~l----------------------------ywtD~~~~~I~r~~~~g~~   70 (628)
T 4a0p_A           19 RISLETNNNNVAIPLTGVKEASALDFDVTDNRI----------------------------YWTDISLKTISRAFMNGSA   70 (628)
T ss_dssp             EEESSCTTCEEECCCCSCSCEEEEEEETTTTEE----------------------------EEEETTTTEEEEEETTSCS
T ss_pred             EEECCCCCcceEEEcCCCCceEEEEEECCCCEE----------------------------EEEECCCCeEEEEECCCCC
Confidence            334544433333332345667788888855433                            2444456778888776543


Q ss_pred             ccceeeeeEecccCcCEEEEEEccCCC-EEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCC-CCEEEE
Q 006825          443 LTALYKCQEIQAHNGSIWSIKFSLDGR-YLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPE-PTSLSP  520 (630)
Q Consensus       443 l~~~~~v~tL~gHt~~V~sVaFSpDG~-~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpd-g~~las  520 (630)
                      ..     ..+..-......|++.+.+. +.++-...+.|.+.++.... ...+.    .........+++.|. |.++.+
T Consensus        71 ~~-----~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~-~~~l~----~~~l~~P~~iavdp~~G~lY~t  140 (628)
T 4a0p_A           71 LE-----HVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQH-RQVLV----WKDLDSPRALALDPAEGFMYWT  140 (628)
T ss_dssp             CE-----EEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTT-CEEEE----CSSCCCEEEEEEETTTTEEEEE
T ss_pred             cE-----EEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCc-EEEEE----eCCCCCcccEEEccCCCeEEEe
Confidence            21     11222224567899987544 55555667889999986443 33332    223345678999985 444444


Q ss_pred             eeC-CCeeeeecccccccccccccCccccccEEEeCCCCceEEeccCCCCEEEEEEcCC-CeE-EEEECCCcEEEEeCCC
Q 006825          521 KHL-DNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHL-LSSSMDKTVRLWHLSS  597 (630)
Q Consensus       521 gs~-Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL~GHs~~V~sLafSPd-~~L-aSgS~DgtVrIWDl~t  597 (630)
                      -.. ...|                       ...++.|..+..+...-.....|++.++ +.| ++=...+.|...|+..
T Consensus       141 D~g~~~~I-----------------------~r~~~dG~~~~~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG  197 (628)
T 4a0p_A          141 EWGGKPKI-----------------------DRAAMDGSERTTLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLG  197 (628)
T ss_dssp             ECSSSCEE-----------------------EEEETTSCSCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             CCCCCCEE-----------------------EEEeCCCCceEEEECCCCCcceEEEccccCEEEEEECCCCEEEEEcCCC
Confidence            311 2333                       3344455555444444456788888886 444 4445667888888765


Q ss_pred             CcEEEEEe-cCCceEEEE
Q 006825          598 KTCLKIFS-HSDYDISLV  614 (630)
Q Consensus       598 g~~l~t~~-H~~~V~sVa  614 (630)
                      ... ..+. .......|+
T Consensus       198 ~~~-~v~~~~l~~P~gla  214 (628)
T 4a0p_A          198 LNR-EVIADDLPHPFGLT  214 (628)
T ss_dssp             CSC-EEEEECCSCEEEEE
T ss_pred             Cce-EEeeccCCCceEEE
Confidence            433 2333 333344555

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=94.32  E-value=8.8  Score=43.29  Aligned_cols=147  Identities=10%  Similarity=-0.048  Sum_probs=84.3

Q ss_pred             EEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccC-CCEEEEE-eCCCcEEEEECcCCceeeeeecccccCc
Q 006825          425 FHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLD-GRYLASA-GEDCVIHVWQVVESERKGELLEKQEDGH  502 (630)
Q Consensus       425 ~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpD-G~~LASg-S~DgtIrVWDl~tg~~~~~l~~~~~~gh  502 (630)
                      ++-...+.|.+.++......     ..+...-..-..|++.|. |.+++|- +..+.|...++.... ...+.     ..
T Consensus        96 ~tD~~~~~I~v~~~dG~~~~-----~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~-~~~l~-----~~  164 (628)
T 4a0p_A           96 WADTGTNRIEVSKLDGQHRQ-----VLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSE-RTTLV-----PN  164 (628)
T ss_dssp             EEETTTTEEEEEETTSTTCE-----EEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS-CEEEE-----CS
T ss_pred             EEECCCCEEEEEecCCCcEE-----EEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCc-eEEEE-----CC
Confidence            44455667888877654211     112233445789999985 5444443 234667777775333 33331     13


Q ss_pred             ccceEEEEECCCCCEEEEe-eCCCeeeeecccccccccccccCccccccEEEeCCCCceEEeccCCCCEEEEEEcCCCeE
Q 006825          503 LNMLLLANGSPEPTSLSPK-HLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKSQHL  581 (630)
Q Consensus       503 ~~~V~svafSpdg~~lasg-s~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL~GHs~~V~sLafSPd~~L  581 (630)
                      ......|++.+++..|..+ .....|                       ..+++.|.....+.........|++..+.++
T Consensus       165 ~~~P~GlalD~~~~~LY~aD~~~~~I-----------------------~~~d~dG~~~~v~~~~l~~P~glav~~~~ly  221 (628)
T 4a0p_A          165 VGRANGLTIDYAKRRLYWTDLDTNLI-----------------------ESSNMLGLNREVIADDLPHPFGLTQYQDYIY  221 (628)
T ss_dssp             CSSEEEEEEETTTTEEEEEETTTTEE-----------------------EEEETTSCSCEEEEECCSCEEEEEEETTEEE
T ss_pred             CCCcceEEEccccCEEEEEECCCCEE-----------------------EEEcCCCCceEEeeccCCCceEEEEECCEEE
Confidence            3556789999875555544 344455                       4445544333344434444567777665556


Q ss_pred             EEEECCCcEEEEeCCCCcEEEEEe
Q 006825          582 LSSSMDKTVRLWHLSSKTCLKIFS  605 (630)
Q Consensus       582 aSgS~DgtVrIWDl~tg~~l~t~~  605 (630)
                      ++-...+.|...|..+|+....+.
T Consensus       222 ~tD~~~~~I~~~dk~tg~~~~~l~  245 (628)
T 4a0p_A          222 WTDWSRRSIERANKTSGQNRTIIQ  245 (628)
T ss_dssp             EEETTTTEEEEEETTTCCSCEEEE
T ss_pred             EecCCCCEEEEEECCCCCceEEEe
Confidence            666667888888877776544443

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=93.93  E-value=5.7  Score=41.72  Aligned_cols=182  Identities=12%  Similarity=0.035  Sum_probs=95.0

Q ss_pred             cCCcEEEEEeCCCCcccceeeeeEecc-----cCcCEEEEEEcc--CCC--EEEEEeC--CCcEEEEECcCCceeeeeec
Q 006825          428 QERVRVRQYGKSCKDLTALYKCQEIQA-----HNGSIWSIKFSL--DGR--YLASAGE--DCVIHVWQVVESERKGELLE  496 (630)
Q Consensus       428 s~Dg~VriWd~~~~el~~~~~v~tL~g-----Ht~~V~sVaFSp--DG~--~LASgS~--DgtIrVWDl~tg~~~~~l~~  496 (630)
                      ..+|.|.++|........ ..+ .+.+     ..-....|.+.+  +|+  +++.-..  +.+|.||++........+..
T Consensus        80 ~~~G~I~~~d~~~~~~~~-~~l-~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~  157 (355)
T 3sre_A           80 DKSGKILLMDLNEKEPAV-SEL-EIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLK  157 (355)
T ss_dssp             --CCEEEEEETTSSSCCE-EEC-EEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEE
T ss_pred             CCCCeEEEEecCCCCCce-EEE-EccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEe
Confidence            368899999987432221 111 2222     334566777766  454  3343332  57889998876543333322


Q ss_pred             ccccCcccceEEEEECCCCCEEEEeeC---CCeeeeecccccccccccccCccccccEEEeCCCCceEEeccCCCCEEEE
Q 006825          497 KQEDGHLNMLLLANGSPEPTSLSPKHL---DNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDL  573 (630)
Q Consensus       497 ~~~~gh~~~V~svafSpdg~~lasgs~---Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL~GHs~~V~sL  573 (630)
                      ............+.+.++|.++++...   |.....+..        ..   ......+|.+....+..+...-..-+.|
T Consensus       158 ~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~--------~~---~~~~g~vyr~d~~~~~~~~~~l~~pNGi  226 (355)
T 3sre_A          158 TIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEM--------HL---GLAWSFVTYYSPNDVRVVAEGFDFANGI  226 (355)
T ss_dssp             EECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHH--------HT---TCCCEEEEEECTTCCEEEEEEESSEEEE
T ss_pred             ccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchh--------hc---cCCccEEEEEECCeEEEeecCCcccCcc
Confidence            211222345778888899988776531   100000000        00   0011245555322333333333456899


Q ss_pred             EEcCC-CeE-EEEECCCcEEEEeCCC-CcE--EEEEecCCceEEEE-cC-CCcEEE
Q 006825          574 SWSKS-QHL-LSSSMDKTVRLWHLSS-KTC--LKIFSHSDYDISLV-DR-LMLRFA  622 (630)
Q Consensus       574 afSPd-~~L-aSgS~DgtVrIWDl~t-g~~--l~t~~H~~~V~sVa-s~-~~~~lA  622 (630)
                      +|+|| ++| ++-+..+.|..|++.. ++.  .+.|........++ +. ++...+
T Consensus       227 a~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~~~g~PDGi~vD~e~G~lwv  282 (355)
T 3sre_A          227 NISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWV  282 (355)
T ss_dssp             EECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEE
T ss_pred             eECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEeCCCCCceEEEeCCCCcEEE
Confidence            99999 555 4556788999999863 432  23443345566676 65 355444

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=93.72  E-value=8.5  Score=40.99  Aligned_cols=152  Identities=6%  Similarity=-0.044  Sum_probs=82.6

Q ss_pred             eeEEEeec----ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeE-EeecCCCCCccccCCcceEEE
Q 006825          342 VQELMRRQ----NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKE-RRSSDERDTSSEKGGRRSSSA  416 (630)
Q Consensus       342 V~~Lafs~----~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~l-asgS~D~dt~s~~gh~~~Vsa  416 (630)
                      ...|++.|    .|........|+ .+|..++.... +. ........|+|+++|++| ++.....              
T Consensus       139 P~~lavdp~~~g~Lyv~d~~~~I~-~id~~~~~v~~-~~-~~~~~P~~ia~d~~G~~lyvad~~~~--------------  201 (430)
T 3tc9_A          139 AVWLSFDPKNHNHLYLVGEQHPTR-LIDFEKEYVST-VY-SGLSKVRTICWTHEADSMIITNDQNN--------------  201 (430)
T ss_dssp             CCEEEEETTEEEEEEEEEBTEEEE-EEETTTTEEEE-EE-CCCSCEEEEEECTTSSEEEEEECCSC--------------
T ss_pred             CCEEEECCCCCCeEEEEeCCCcEE-EEECCCCEEEE-Ee-cCCCCcceEEEeCCCCEEEEEeCCCC--------------
Confidence            35566663    232222226677 77877655433 33 345667889999999844 3211110              


Q ss_pred             eecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEcc-CCCEEEEEeCCCcEEEEECcCCceeeeee
Q 006825          417 TDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSL-DGRYLASAGEDCVIHVWQVVESERKGELL  495 (630)
Q Consensus       417 ~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSp-DG~~LASgS~DgtIrVWDl~tg~~~~~l~  495 (630)
                                 .....+.+++.. +.+...   ..+.. ......++++| +|.++++-...+.|..++...+...... 
T Consensus       202 -----------~~~~~v~~~~~~-g~~~~~---~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~-  264 (430)
T 3tc9_A          202 -----------NDRPNNYILTRE-SGFKVI---TELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLF-  264 (430)
T ss_dssp             -----------TTSEEEEEEEGG-GTSCSE---EEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEE-
T ss_pred             -----------cccceEEEEeCC-Cceeee---eeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEE-
Confidence                       001122223322 111111   11221 23356788999 7887777777889999998765532211 


Q ss_pred             cccccCcccceEEEEECCCCC-EEEEeeCCCeeeee
Q 006825          496 EKQEDGHLNMLLLANGSPEPT-SLSPKHLDNHLEKK  530 (630)
Q Consensus       496 ~~~~~gh~~~V~svafSpdg~-~lasgs~Dg~I~i~  530 (630)
                         ..+.......++|+|+++ ++++......|..+
T Consensus       265 ---~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~  297 (430)
T 3tc9_A          265 ---TIQDSGWEFHIQFHPSGNYAYIVVVNQHYILRS  297 (430)
T ss_dssp             ---ECSSSSCCEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred             ---EcCCCCcceeEEEcCCCCEEEEEECCCCEEEEE
Confidence               112224467899999999 45555555666443

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=93.48  E-value=7.7  Score=43.62  Aligned_cols=147  Identities=8%  Similarity=-0.070  Sum_probs=76.6

Q ss_pred             EEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeC--CCcEEEEECcCCceeeeeecccccCc
Q 006825          425 FHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGE--DCVIHVWQVVESERKGELLEKQEDGH  502 (630)
Q Consensus       425 ~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~--DgtIrVWDl~tg~~~~~l~~~~~~gh  502 (630)
                      ++-...+.|.+.+.......     ..+.+.-..-..|++.|.+.+|+-...  .+.|...++. |.....+.    ...
T Consensus       100 ~~d~~~~~I~v~~~dG~~~~-----~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~d-G~~~~~l~----~~~  169 (619)
T 3s94_A          100 WTDSETNRIEVSNLDGSLRK-----VLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMD-GSSRFIII----NSE  169 (619)
T ss_dssp             EEETTTTEEEEEETTSCSCE-----EEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETT-SCSCEEEE----CSS
T ss_pred             EEeCCCCEEEEEECCCCCEE-----EEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECC-CCceEEEE----eCC
Confidence            44455677888887654211     112234455778999996544444332  3556655654 33333332    223


Q ss_pred             ccceEEEEECCCCCEEEEe-eCCCeeeeecccccccccccccCccccccEEEeCCCCceEEec-cCCCCEEEEEEcCCCe
Q 006825          503 LNMLLLANGSPEPTSLSPK-HLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQ-GHLDDVLDLSWSKSQH  580 (630)
Q Consensus       503 ~~~V~svafSpdg~~lasg-s~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL~-GHs~~V~sLafSPd~~  580 (630)
                      ......+++.++...|..+ .....|                       ..+++.|.....+. +.......|++..+.+
T Consensus       170 ~~~P~Glald~~~~~LY~aD~~~~~I-----------------------~~~~~dG~~~~~~~~~~~~~P~gi~~~~~~l  226 (619)
T 3s94_A          170 IYWPNGLTLDYEEQKLYWADAKLNFI-----------------------HKSNLDGTNRQAVVKGSLPHPFALTLFEDIL  226 (619)
T ss_dssp             CSSEEEEEEETTTTEEEEEETTTCCE-----------------------EEESSSCCEEC---------CCCEEESSSEE
T ss_pred             CCCCcEEEEEccCCEEEEEeCCCCeE-----------------------EEecCCCCccEEEEeCCCCCceEEEEeCCEE
Confidence            3456789999875555444 333444                       33344443322221 1112224566666555


Q ss_pred             EEEEECCCcEEEEeCCCCcEEEEE
Q 006825          581 LLSSSMDKTVRLWHLSSKTCLKIF  604 (630)
Q Consensus       581 LaSgS~DgtVrIWDl~tg~~l~t~  604 (630)
                      +++-...+.|...|..+|+.+..+
T Consensus       227 y~td~~~~~V~~~d~~tg~~~~~i  250 (619)
T 3s94_A          227 YWTDWSTHSILACNKYTGEGLREI  250 (619)
T ss_dssp             EEECTTTCSEEEEESSSCCCCEEC
T ss_pred             EEecCCCCEEEEEECCCCcccEEE
Confidence            556666778888888777654444

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=93.44  E-value=2.8  Score=43.81  Aligned_cols=153  Identities=11%  Similarity=0.121  Sum_probs=90.3

Q ss_pred             EEecCCcEEEEEeCCCCcccceeeeeEecc----cC--cCEEEEEE---ccCCCEEEEEe-------------CCCcEEE
Q 006825          425 FHGQERVRVRQYGKSCKDLTALYKCQEIQA----HN--GSIWSIKF---SLDGRYLASAG-------------EDCVIHV  482 (630)
Q Consensus       425 ~Sgs~Dg~VriWd~~~~el~~~~~v~tL~g----Ht--~~V~sVaF---SpDG~~LASgS-------------~DgtIrV  482 (630)
                      ++.-..++|..|+...+...   .+ .+.+    ..  ..+..|.|   .|+|++++..-             .+..|..
T Consensus        29 vs~l~~g~V~~~~~~~~~~~---~~-~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~~~~g~~~v~~  104 (334)
T 2p9w_A           29 QSNLYKGRIEVYNPKTQSHF---NV-VIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQSSHGASSFHS  104 (334)
T ss_dssp             EEETTTTEEEEECTTTCCEE---EE-CCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSCCSSSCCEEEE
T ss_pred             EEeccCCEEEEEcCCCCeEE---EE-ecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccccccccCCCCEEEE
Confidence            44446789999988644221   11 2322    11  14689999   68888888543             2678999


Q ss_pred             EECc---CCceeeeeecc-cccC-------cccceEEEEECCCCCEEEEeeCC-CeeeeecccccccccccccCcccccc
Q 006825          483 WQVV---ESERKGELLEK-QEDG-------HLNMLLLANGSPEPTSLSPKHLD-NHLEKKRRGRSINRKSLSLDHMVVPE  550 (630)
Q Consensus       483 WDl~---tg~~~~~l~~~-~~~g-------h~~~V~svafSpdg~~lasgs~D-g~I~i~~~~~~~~~~s~s~d~~i~~~  550 (630)
                      +|+.   +++.+...-.. ...+       -......++..++|+..++++.. +.|..           +++++..  .
T Consensus       105 ~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~r-----------V~pdG~~--~  171 (334)
T 2p9w_A          105 FNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIAR-----------VSADGKT--V  171 (334)
T ss_dssp             EESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEE-----------ECTTSCC--E
T ss_pred             EcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEE-----------EeCCCCE--E
Confidence            9998   77665443210 0011       12347799999999999988776 65521           1111110  0


Q ss_pred             EEEeCCCCceEEeccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCCC
Q 006825          551 TVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSK  598 (630)
Q Consensus       551 ~Vwdlsgk~l~tL~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg  598 (630)
                      ..|.+...    .....-..+.|+++|+ .+|+.....+.+..+|+.+.
T Consensus       172 ~~~~~~~~----~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~p  216 (334)
T 2p9w_A          172 STFAWESG----NGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKP  216 (334)
T ss_dssp             EEEEECCC----CSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSS
T ss_pred             eeeeecCC----CcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCC
Confidence            22322110    0111223578999999 67776655999999998753

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=92.51  E-value=9.4  Score=38.12  Aligned_cols=191  Identities=14%  Similarity=0.068  Sum_probs=110.3

Q ss_pred             CccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeE--eccc
Q 006825          378 SWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQE--IQAH  455 (630)
Q Consensus       378 gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~t--L~gH  455 (630)
                      |=.+.+-.+++.|++..|..                            ....++.|...|.. +++     ++.  +.+.
T Consensus        24 g~~~~lSGla~~~~~~~L~a----------------------------V~d~~~~I~~ld~~-g~v-----~~~i~l~g~   69 (255)
T 3qqz_A           24 GITNNISSLTWSAQSNTLFS----------------------------TINKPAAIVEMTTN-GDL-----IRTIPLDFV   69 (255)
T ss_dssp             TCCSCEEEEEEETTTTEEEE----------------------------EEETTEEEEEEETT-CCE-----EEEEECSSC
T ss_pred             CcccCcceeEEeCCCCEEEE----------------------------EECCCCeEEEEeCC-CCE-----EEEEecCCC
Confidence            55567888888887654432                            23335667777776 332     222  2332


Q ss_pred             CcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeecc--c--ccCcccceEEEEECCCCCEEEEeeCCCeeeeec
Q 006825          456 NGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEK--Q--EDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKR  531 (630)
Q Consensus       456 t~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~--~--~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~  531 (630)
                       .-.-.|++.+++.++++.-.++.+.++++.....+..+...  .  .......+-.+++.|++..|.++.......++.
T Consensus        70 -~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~  148 (255)
T 3qqz_A           70 -KDLETIEYIGDNQFVISDERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYK  148 (255)
T ss_dssp             -SSEEEEEECSTTEEEEEETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEE
T ss_pred             -CChHHeEEeCCCEEEEEECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEE
Confidence             45778899999988777656778888888654432211101  1  112344578999999986666654443332222


Q ss_pred             ccccccccccccCccccccEEEeCCCCceEEe-------ccCCCCEEEEEEcCC--CeEEEEECCCcEEEEeCCCCcEEE
Q 006825          532 RGRSINRKSLSLDHMVVPETVFALSDKPICSF-------QGHLDDVLDLSWSKS--QHLLSSSMDKTVRLWHLSSKTCLK  602 (630)
Q Consensus       532 ~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL-------~GHs~~V~sLafSPd--~~LaSgS~DgtVrIWDl~tg~~l~  602 (630)
                      ... .                  ..+..+..+       ..+...+.+|+|.|.  .+++.....+.|-++|.. |+.+.
T Consensus       149 ~~g-~------------------~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~  208 (255)
T 3qqz_A          149 VNG-L------------------LSSNELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLV-GEVIG  208 (255)
T ss_dssp             EES-T------------------TCSSCCEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTT-CCEEE
T ss_pred             Ecc-c------------------ccCCceeeecchhhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCC-CCEEE
Confidence            110 0                  000111111       012345789999998  455666677889999965 66777


Q ss_pred             EEe-cC---------CceEEEE-cCCCcEEEE
Q 006825          603 IFS-HS---------DYDISLV-DRLMLRFAY  623 (630)
Q Consensus       603 t~~-H~---------~~V~sVa-s~~~~~lAs  623 (630)
                      .+. ..         ..--.|+ ++.+..+.+
T Consensus       209 ~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv  240 (255)
T 3qqz_A          209 EMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV  240 (255)
T ss_dssp             EEECSTTGGGCSSCCCSEEEEEECTTCCEEEE
T ss_pred             EEEcCCccCCcccccCCCCeeEECCCCCEEEE
Confidence            665 21         2456777 666665554

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=92.31  E-value=12  Score=38.69  Aligned_cols=65  Identities=6%  Similarity=-0.063  Sum_probs=36.4

Q ss_pred             ceEEeccCCCCEEEEEEcCCCeEEEEECCCcEEEEeCCCCcE------EEEE-ecCCceEEEE-cCCCcEEEEe
Q 006825          559 PICSFQGHLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTC------LKIF-SHSDYDISLV-DRLMLRFAYG  624 (630)
Q Consensus       559 ~l~tL~GHs~~V~sLafSPd~~LaSgS~DgtVrIWDl~tg~~------l~t~-~H~~~V~sVa-s~~~~~lAsg  624 (630)
                      ++..+. +......++|....++++.-..+.|...++.....      ...+ .....+..|+ .|++..+.+.
T Consensus       260 p~~~~~-~~~ap~G~~~~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~~  332 (352)
T 2ism_A          260 PLYFWP-QGFPPGNLAFFRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSGFGRLREVQVGPDGALYVTT  332 (352)
T ss_dssp             CSEECT-TCCCEEEEEEETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEEECTTSCEEEEE
T ss_pred             CeEecC-CCCCCcceEEECCEEEEEECCCCEEEEEEECCCCcceeecchheecccCCCeeEEEECCCCcEEEEE
Confidence            444443 33356778884335555555566777776654321      1222 2346788888 7777665554

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=92.13  E-value=0.37  Score=55.32  Aligned_cols=112  Identities=6%  Similarity=-0.083  Sum_probs=61.2

Q ss_pred             CEEEEEEcc-CCCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCE-EEEeeCC-Ceeeeecccc
Q 006825          458 SIWSIKFSL-DGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTS-LSPKHLD-NHLEKKRRGR  534 (630)
Q Consensus       458 ~V~sVaFSp-DG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~-lasgs~D-g~I~i~~~~~  534 (630)
                      ....|++.+ .++++++-...+.|.+.++.... ...++    .........|++.|.+.+ +++.... +.|       
T Consensus       454 ~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~-~~~l~----~~~~~~P~giavDp~~g~ly~td~~~~~~I-------  521 (699)
T 1n7d_A          454 APDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK-RKTLF----REQGSKPRAIVVDPVHGFMYWTDWGTPAKI-------  521 (699)
T ss_dssp             -CCCEECCCSSSBCEECCTTTSCEEEEBSSSCC-EEEEC----CCSSCCCCCEECCSSSSCCEECCCSSSCCE-------
T ss_pred             CcceEEEEeeCCcEEEEeccCCeEEEEecCCCc-eEEEE----eCCCCCcceEEEccCCCcEEEcccCCCCeE-------
Confidence            345688885 45555655667889999986443 33332    111233456788886443 3333221 333       


Q ss_pred             cccccccccCccccccEEEeCCCCceEEec-cCCCCEEEEEEcCC--CeEEEEECCCcEEEEeCCC
Q 006825          535 SINRKSLSLDHMVVPETVFALSDKPICSFQ-GHLDDVLDLSWSKS--QHLLSSSMDKTVRLWHLSS  597 (630)
Q Consensus       535 ~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL~-GHs~~V~sLafSPd--~~LaSgS~DgtVrIWDl~t  597 (630)
                                      .++++.|.....+. ..-...+.|+|+|+  .++++-+..+.|..+++..
T Consensus       522 ----------------~~~~~dG~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG  571 (699)
T 1n7d_A          522 ----------------KKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG  571 (699)
T ss_dssp             ----------------EBCCSSSCCCCEESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSS
T ss_pred             ----------------EEEeCCCCCeeEEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCC
Confidence                            22233343333332 12234567889886  4455666677888888864

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=92.05  E-value=2.4  Score=45.91  Aligned_cols=151  Identities=14%  Similarity=0.036  Sum_probs=85.1

Q ss_pred             CccEecccCCCCceeEEecCCc---cCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEE-e-cCCcE
Q 006825          358 SFDLNNNGSSGGGMKSKKKGSW---FKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFH-G-QERVR  432 (630)
Q Consensus       358 ~tvr~vWD~~tG~~~~~lk~gH---~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~S-g-s~Dg~  432 (630)
                      +.+| .-++..+..-+.++..+   ...|..+..+|+|.+||-.+         .|.-.|..+......... + ..-..
T Consensus        41 n~iR-~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g---------~~~V~Vv~LP~~~~~~~~~~~~~~~q  110 (452)
T 3pbp_A           41 NIIR-WYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFN---------DNEIFVMEVPWGYSNVEDVSIQDAFQ  110 (452)
T ss_dssp             TEEE-EEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEEC---------SSEEEEEECCTTCSCCCCHHHHHTTE
T ss_pred             CEEE-EEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEec---------CCeEEEEEecCccccCcccccccccc
Confidence            5566 44554333444444332   33577899999999998532         222333333322111110 0 01123


Q ss_pred             EEEEeCCCCcccceeeeeEecccCcCEEEEEEcc---CCCEEEEEeCCCcEEEEECcCCceeeeeecc-----cccCccc
Q 006825          433 VRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSL---DGRYLASAGEDCVIHVWQVVESERKGELLEK-----QEDGHLN  504 (630)
Q Consensus       433 VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSp---DG~~LASgS~DgtIrVWDl~tg~~~~~l~~~-----~~~gh~~  504 (630)
                      ++.|.+..-+          ......|..+.|+|   .+..|++--.|++||+||+.........+..     .......
T Consensus       111 ~~ty~l~~~~----------~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~  180 (452)
T 3pbp_A          111 IFHYSIDEEE----------VGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVN  180 (452)
T ss_dssp             EEEEEGGGCC------------CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCC
T ss_pred             eeEEEcCCcc----------cCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccc
Confidence            4455442110          11467899999999   4568999999999999999863321111110     1123336


Q ss_pred             ceEEEEECCCCCEEEEee--CCCeee
Q 006825          505 MLLLANGSPEPTSLSPKH--LDNHLE  528 (630)
Q Consensus       505 ~V~svafSpdg~~lasgs--~Dg~I~  528 (630)
                      .|.+++|..++-.|...+  ..|.|.
T Consensus       181 ev~S~~Fg~~~lTLYvl~~t~~GDIY  206 (452)
T 3pbp_A          181 DITDLEFSKDGLTLYCLNTTEGGDIF  206 (452)
T ss_dssp             CEEEEEECTTSSCEEEEECTTSCEEE
T ss_pred             eEEEEEEcCCCcEEEEEecCCCCCEE
Confidence            688999999887777644  667653

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=92.01  E-value=4.7  Score=43.16  Aligned_cols=132  Identities=6%  Similarity=0.014  Sum_probs=73.2

Q ss_pred             cEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCC---Cc-EEEEECcCCceeeeeecccccCcccce
Q 006825          431 VRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGED---CV-IHVWQVVESERKGELLEKQEDGHLNML  506 (630)
Q Consensus       431 g~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~D---gt-IrVWDl~tg~~~~~l~~~~~~gh~~~V  506 (630)
                      ..|+.++...+.      +.++.+.......|+|+++|+++++-...   .. +...+...+......     .......
T Consensus       162 ~~I~~id~~~g~------v~~~~~~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~~~~~~~-----~~~~~~P  230 (433)
T 4hw6_A          162 DAFRHVDFVNQY------VDIKTTNIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASGFTERLS-----LCNARGA  230 (433)
T ss_dssp             SCEEEEETTTTE------EEEECCCCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGTTCCEEE-----EEECSSB
T ss_pred             CCEEEEECCCCE------EEEeecCCCCccEEEECCCCCEEEEcCCCCcccceEEEEECCCCeecccc-----ccccCCC
Confidence            678888886664      23344455568999999999955554321   22 222222211110011     0112334


Q ss_pred             EEEEECC-CCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeCC-CCceEEec--cCCCCEEEEEEcCC-C-e
Q 006825          507 LLANGSP-EPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALS-DKPICSFQ--GHLDDVLDLSWSKS-Q-H  580 (630)
Q Consensus       507 ~svafSp-dg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdls-gk~l~tL~--GHs~~V~sLafSPd-~-~  580 (630)
                      ..++++| ++.++++...++.|                       ..++.. +..+..+.  +....-..|+|+|+ + +
T Consensus       231 ~giavd~~~G~lyv~d~~~~~V-----------------------~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~L  287 (433)
T 4hw6_A          231 KTCAVHPQNGKIYYTRYHHAMI-----------------------SSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWA  287 (433)
T ss_dssp             CCCEECTTTCCEEECBTTCSEE-----------------------EEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEE
T ss_pred             CEEEEeCCCCeEEEEECCCCEE-----------------------EEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEE
Confidence            4677888 67777776666666                       344442 33312221  11222346999999 6 5


Q ss_pred             EEEEECCCcEEEEeCC
Q 006825          581 LLSSSMDKTVRLWHLS  596 (630)
Q Consensus       581 LaSgS~DgtVrIWDl~  596 (630)
                      +++-...+.|+.++..
T Consensus       288 Yvad~~~~~I~~~~~d  303 (433)
T 4hw6_A          288 YIIYNGKHCIYRVDYN  303 (433)
T ss_dssp             EEEETTTTEEEEEEBC
T ss_pred             EEEeCCCCEEEEEeCC
Confidence            5666678899998764

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=92.00  E-value=7.7  Score=40.58  Aligned_cols=120  Identities=13%  Similarity=0.027  Sum_probs=63.6

Q ss_pred             CccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeee-eEecccC
Q 006825          378 SWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKC-QEIQAHN  456 (630)
Q Consensus       378 gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v-~tL~gHt  456 (630)
                      .-+..-+.++|.|||.++++-                             -..++|++++...+.......+ ..+....
T Consensus        29 ~gL~~P~~ia~~pdG~llVte-----------------------------r~~G~I~~v~~~~g~~~~v~~~~~v~~~g~   79 (347)
T 3das_A           29 TGLNSPWGLAPLPGGDLLVSS-----------------------------RDEATITRVDAKTGRKTELGEVPGVSPSGE   79 (347)
T ss_dssp             CCCSSEEEEEECTTSCEEEEE-----------------------------TTTCEEEEECTTTCCEEEEEECTTCCCBTT
T ss_pred             cCCCCceEEEEcCCCcEEEEE-----------------------------ecCCEEEEEECCCCcEeeecccCceeecCC
Confidence            445566789999998766532                             1256677776543322111000 0112335


Q ss_pred             cCEEEEEEccC----CCEEEEE--eCCCcEEEEECcCCc-------eeeeeecccccCcccceEEEEECCCCCEEEEeeC
Q 006825          457 GSIWSIKFSLD----GRYLASA--GEDCVIHVWQVVESE-------RKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHL  523 (630)
Q Consensus       457 ~~V~sVaFSpD----G~~LASg--S~DgtIrVWDl~tg~-------~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~  523 (630)
                      +....|+|+|+    +.+.++-  ..+..|.-|.+..+.       ....++.....+.......|+|.|||.++++.+.
T Consensus        80 ~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd  159 (347)
T 3das_A           80 GGLLGIALSPDYASDHMVYAYFTSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGE  159 (347)
T ss_dssp             BSEEEEEECTTHHHHCEEEEEEECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBC
T ss_pred             CCceeeEeccccccCCEEEEEEecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECC
Confidence            66899999995    5444432  234455556654421       1122221111122223457999999998888655


Q ss_pred             CCe
Q 006825          524 DNH  526 (630)
Q Consensus       524 Dg~  526 (630)
                      .+.
T Consensus       160 ~~~  162 (347)
T 3das_A          160 SGD  162 (347)
T ss_dssp             TTC
T ss_pred             CCC
Confidence            443

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=91.99  E-value=13  Score=39.94  Aligned_cols=70  Identities=11%  Similarity=0.026  Sum_probs=38.4

Q ss_pred             CcCEEEEEEccC----CCEEEEEeC------------CCcEEEEECcCC--c--eeeeeecccccCcccceEEEEECCCC
Q 006825          456 NGSIWSIKFSLD----GRYLASAGE------------DCVIHVWQVVES--E--RKGELLEKQEDGHLNMLLLANGSPEP  515 (630)
Q Consensus       456 t~~V~sVaFSpD----G~~LASgS~------------DgtIrVWDl~tg--~--~~~~l~~~~~~gh~~~V~svafSpdg  515 (630)
                      .+....|+|+||    +.+.++-+.            ...|.-|++..+  .  ....++.............++|.|||
T Consensus        76 ~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG  155 (454)
T 1cru_A           76 QNGLLGFAFHPDFKNNPYIYISGTFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQ  155 (454)
T ss_dssp             SCSEEEEEECTTTTTSCEEEEEEEEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTS
T ss_pred             CCceeEEEECCCcCcCCEEEEEEeccccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCC
Confidence            456789999994    444444332            124555554322  1  11222211112222346889999999


Q ss_pred             CEEEEeeCCC
Q 006825          516 TSLSPKHLDN  525 (630)
Q Consensus       516 ~~lasgs~Dg  525 (630)
                      .++++.+..+
T Consensus       156 ~Lyv~~Gd~~  165 (454)
T 1cru_A          156 KIYYTIGDQG  165 (454)
T ss_dssp             CEEEEECCTT
T ss_pred             eEEEEECCCC
Confidence            9888765443

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=91.89  E-value=5.1  Score=41.61  Aligned_cols=69  Identities=6%  Similarity=-0.087  Sum_probs=38.0

Q ss_pred             CcCEEEEEEccC----CCEEEEEeC---C----CcEEEEECcCC--ce--eeeeecccccCcccceEEEEECCCCCEEEE
Q 006825          456 NGSIWSIKFSLD----GRYLASAGE---D----CVIHVWQVVES--ER--KGELLEKQEDGHLNMLLLANGSPEPTSLSP  520 (630)
Q Consensus       456 t~~V~sVaFSpD----G~~LASgS~---D----gtIrVWDl~tg--~~--~~~l~~~~~~gh~~~V~svafSpdg~~las  520 (630)
                      ......|+|+|+    +.+.++-..   +    ..|..|++...  ..  ...++.....+.......++|.|||.++++
T Consensus        72 ~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt  151 (354)
T 3a9g_A           72 EAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYIT  151 (354)
T ss_dssp             TCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEE
T ss_pred             CCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEE
Confidence            346789999997    544444332   3    56777776543  11  122211111111122357899999998887


Q ss_pred             eeCC
Q 006825          521 KHLD  524 (630)
Q Consensus       521 gs~D  524 (630)
                      .+..
T Consensus       152 ~G~~  155 (354)
T 3a9g_A          152 TGDA  155 (354)
T ss_dssp             CCCT
T ss_pred             ECCC
Confidence            5443

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=91.65  E-value=17  Score=40.84  Aligned_cols=179  Identities=8%  Similarity=-0.083  Sum_probs=93.2

Q ss_pred             CccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCcEEEEEe
Q 006825          358 SFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYG  437 (630)
Q Consensus       358 ~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd  437 (630)
                      ..|+ .-++.......++...-.+...+|+|.+.+..+.                            ++=....+|..++
T Consensus        18 ~~I~-~i~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~ly----------------------------~sD~~~~~I~r~~   68 (619)
T 3s94_A           18 RDLR-LVDATNGKENATIVVGGLEDAAAVDFVFSHGLIY----------------------------WSDVSEEAIKRTE   68 (619)
T ss_dssp             SBEE-EECCC---------CBCCSCEEEEEEETTTTEEE----------------------------EEETTTTEEEEEE
T ss_pred             ccEE-EEeCCCCcceEEEEEcCCCceEEEEEEeCCCEEE----------------------------EEECCCCeEEEEE
Confidence            4455 4455433212222224455677888888554332                            2333345677776


Q ss_pred             CCCCcccceeeeeEecccCcCEEEEEEccCCC-EEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCC
Q 006825          438 KSCKDLTALYKCQEIQAHNGSIWSIKFSLDGR-YLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPT  516 (630)
Q Consensus       438 ~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~-~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~  516 (630)
                      ......    ....+..-......|++.+.++ +.++-...+.|.+.++.... ...+.    .........|++.|...
T Consensus        69 ~~g~~~----~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~-~~~l~----~~~l~~P~~Iavdp~~g  139 (619)
T 3s94_A           69 FNKTES----VQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSL-RKVLF----WQELDQPRAIALDPSSG  139 (619)
T ss_dssp             C---------CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEE----CSSCSCCCCEEEETTTT
T ss_pred             ccCCCc----eEEEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCC-EEEEE----eCCCCCCceEEEecCCC
Confidence            654311    0112233335688999999554 55555677899999986433 33332    22334456788888644


Q ss_pred             EEEEeeC--CCeeeeecccccccccccccCccccccEEEeCCCCceEEec-cCCCCEEEEEEcCC-CeE-EEEECCCcEE
Q 006825          517 SLSPKHL--DNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQ-GHLDDVLDLSWSKS-QHL-LSSSMDKTVR  591 (630)
Q Consensus       517 ~lasgs~--Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL~-GHs~~V~sLafSPd-~~L-aSgS~DgtVr  591 (630)
                      .|.....  ...|                       ...++.|.....+. ..-...+.|++.++ +.| ++=...+.|.
T Consensus       140 ~ly~tD~g~~~~I-----------------------~r~~~dG~~~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~  196 (619)
T 3s94_A          140 FMYWTDWGEVPKI-----------------------ERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIH  196 (619)
T ss_dssp             EEEEEECSSSCEE-----------------------EEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEETTTCCEE
T ss_pred             eEEEeccCCCCEE-----------------------EEEECCCCceEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEE
Confidence            4433322  1233                       23344555444443 23345688899886 444 4445567788


Q ss_pred             EEeCCC
Q 006825          592 LWHLSS  597 (630)
Q Consensus       592 IWDl~t  597 (630)
                      ..|+..
T Consensus       197 ~~~~dG  202 (619)
T 3s94_A          197 KSNLDG  202 (619)
T ss_dssp             EESSSC
T ss_pred             EecCCC
Confidence            888754

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=89.15  E-value=4.3  Score=41.98  Aligned_cols=69  Identities=7%  Similarity=-0.047  Sum_probs=38.4

Q ss_pred             CcCEEEEEEccC---CCEE-EEEeCC-----CcEEEEECcCCce--eeeeecccc--cCcccceEEEEECCCCCEEEEee
Q 006825          456 NGSIWSIKFSLD---GRYL-ASAGED-----CVIHVWQVVESER--KGELLEKQE--DGHLNMLLLANGSPEPTSLSPKH  522 (630)
Q Consensus       456 t~~V~sVaFSpD---G~~L-ASgS~D-----gtIrVWDl~tg~~--~~~l~~~~~--~gh~~~V~svafSpdg~~lasgs  522 (630)
                      ......|+|+|+   +.+| ++-...     ..|..|++..+..  ...++....  .+.......++|.|||.++++.+
T Consensus        74 ~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G  153 (352)
T 2ism_A           74 ESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTG  153 (352)
T ss_dssp             TCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECC
T ss_pred             CCCceeEEECCCCCCCCEEEEEEecCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEEC
Confidence            356789999998   4444 443332     5677787764321  112221111  11112235789999998877754


Q ss_pred             CC
Q 006825          523 LD  524 (630)
Q Consensus       523 ~D  524 (630)
                      ..
T Consensus       154 ~~  155 (352)
T 2ism_A          154 EV  155 (352)
T ss_dssp             CT
T ss_pred             CC
Confidence            43

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=87.31  E-value=13  Score=38.30  Aligned_cols=67  Identities=9%  Similarity=0.011  Sum_probs=35.7

Q ss_pred             CcCEEEEEEccC----CCEEEEEeC-------CCcEEEEECcCCc----eeeeeecc-c---ccCcccceEEEEECCCCC
Q 006825          456 NGSIWSIKFSLD----GRYLASAGE-------DCVIHVWQVVESE----RKGELLEK-Q---EDGHLNMLLLANGSPEPT  516 (630)
Q Consensus       456 t~~V~sVaFSpD----G~~LASgS~-------DgtIrVWDl~tg~----~~~~l~~~-~---~~gh~~~V~svafSpdg~  516 (630)
                      .+....|+|+|+    +.+.++-..       ...|..|++....    ....++.. .   ...|.  ...++|.|||.
T Consensus        65 ~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~--~~~l~~~pdG~  142 (353)
T 2g8s_A           65 QGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHF--GGRLVFDGKGY  142 (353)
T ss_dssp             TCSEEEEEECTTHHHHCEEEEEEEEECSSSCEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCC--CCCEEECSSSE
T ss_pred             CCCceeEEECCCCCCCCEEEEEEeCCCCCCCceeEEEEEEECCCCCCCCceEEEEEECCCCCCCccc--CccEEECCCCc
Confidence            345789999995    544444332       2245556654321    12222211 1   11232  34699999998


Q ss_pred             EEEEeeCC
Q 006825          517 SLSPKHLD  524 (630)
Q Consensus       517 ~lasgs~D  524 (630)
                      ++++.+..
T Consensus       143 Lyv~~Gd~  150 (353)
T 2g8s_A          143 LFIALGEN  150 (353)
T ss_dssp             EEEEECCT
T ss_pred             EEEEECCC
Confidence            77775443

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=86.70  E-value=29  Score=36.13  Aligned_cols=155  Identities=6%  Similarity=-0.130  Sum_probs=85.0

Q ss_pred             EeecCCCccEecccCCCCceeEEecCCcc-------CCEEEEEE---cCCCCeEEeecCCCCCccccCCcceEEEeecCC
Q 006825          352 EEGNKDSFDLNNNGSSGGGMKSKKKGSWF-------KSIRTVAS---SVTGHKERRSSDERDTSSEKGGRRSSSATDDSQ  421 (630)
Q Consensus       352 aSgS~D~tvr~vWD~~tG~~~~~lk~gH~-------~~V~sVAf---SpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~  421 (630)
                      ++.-..++|. .||...+....... ...       ..+..|.+   .|+|.+++.. +-              ..+|..
T Consensus        29 vs~l~~g~V~-~~~~~~~~~~~~~~-~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~-~~--------------~~af~~   91 (334)
T 2p9w_A           29 QSNLYKGRIE-VYNPKTQSHFNVVI-DGASSNGDGEQQMSGLSLLTHDNSKRLFAVM-KN--------------AKSFNF   91 (334)
T ss_dssp             EEETTTTEEE-EECTTTCCEEEECC-TTTCCSSCCSEEEEEEEESSSSSCCEEEEEE-EE--------------TTTTCT
T ss_pred             EEeccCCEEE-EEcCCCCeEEEEec-CCccccCCCcceeeEEEEeccCCCCcEEEEE-cc--------------cccccc
Confidence            4444667887 88887554333322 221       13467788   5776665521 00              001111


Q ss_pred             CeEEEecCCcEEEEEeCC---CCcccceeeeeEecccC-----------cCEEEEEEccCCCEEEEEeCC-CcEEEEECc
Q 006825          422 DVSFHGQERVRVRQYGKS---CKDLTALYKCQEIQAHN-----------GSIWSIKFSLDGRYLASAGED-CVIHVWQVV  486 (630)
Q Consensus       422 d~l~Sgs~Dg~VriWd~~---~~el~~~~~v~tL~gHt-----------~~V~sVaFSpDG~~LASgS~D-gtIrVWDl~  486 (630)
                      .+ ..-+.+..|..||+.   +++...   ...|.+..           .....|+..++|+..++++.- +.|...+..
T Consensus        92 ~g-~~~~g~~~v~~~Dl~~~~tg~~~~---~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pd  167 (334)
T 2p9w_A           92 AD-QSSHGASSFHSFNLPLSENSKPVW---SVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSAD  167 (334)
T ss_dssp             TS-CCSSSCCEEEEEESSCCTTCCCSE---EEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTT
T ss_pred             cc-cccCCCCEEEEEcCCcCCCCCEEE---EecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCC
Confidence            00 001235678888887   443221   12222221           348899999999999998887 776666654


Q ss_pred             CCceeeeee-cccccCcccceEEEEECCCCCEEEEeeCCCeee
Q 006825          487 ESERKGELL-EKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLE  528 (630)
Q Consensus       487 tg~~~~~l~-~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~  528 (630)
                      . +....+. .............++++|++.+|+.....+.+.
T Consensus       168 G-~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~  209 (334)
T 2p9w_A          168 G-KTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALT  209 (334)
T ss_dssp             S-CCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEE
T ss_pred             C-CEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEE
Confidence            3 2222221 111122223466899999998888876677773

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=85.92  E-value=5.1  Score=39.71  Aligned_cols=119  Identities=9%  Similarity=-0.041  Sum_probs=64.1

Q ss_pred             cCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeeccc---ccCcccceEEEEECCCCCEEEEeeCCCeeeeeccc
Q 006825          457 GSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQ---EDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRG  533 (630)
Q Consensus       457 ~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~---~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~  533 (630)
                      ..+..|+|+|+|.+.+.  .++.+.--+..+.....-+-...   ..+... ...+.|.|+|.+.++  .|+.|..+...
T Consensus        41 ~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~-F~a~~fD~~G~LYav--~dG~iyr~~pP  115 (236)
T 1tl2_A           41 SNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQ-FQFLFFDPNGYLYAV--SKDKLYKASPP  115 (236)
T ss_dssp             TTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGG-CSEEEECTTSCEEEE--ETTEEEEESCC
T ss_pred             ccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEeccccccc-ceEEEECCCCCEEEe--CCCEEEEeCCC
Confidence            46779999999997666  56665544443321111000000   012222 468899999998888  56888544432


Q ss_pred             ccccccccccCccccccEEEeCCCCceEEeccCCCCEEEEEEcCCCeEEEEECCCcEEEEeCC
Q 006825          534 RSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKSQHLLSSSMDKTVRLWHLS  596 (630)
Q Consensus       534 ~~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL~GHs~~V~sLafSPd~~LaSgS~DgtVrIWDl~  596 (630)
                      ....             .-|--.+..+  -.+-=..+..|.|.|++.|.... |+.++-+-..
T Consensus       116 ~~~~-------------~~Wl~~a~~v--g~~gw~~~~~lff~p~G~Lyav~-dg~lyr~~~P  162 (236)
T 1tl2_A          116 QSDT-------------DNWIARATEV--GSGGWSGFKFLFFHPNGYLYAVH-GQQFYKALPP  162 (236)
T ss_dssp             CSTT-------------CCHHHHSEEE--ECSSGGGEEEEEECTTSCEEEEE-TTEEEEECCC
T ss_pred             cCCC-------------CceeccccEe--ccCCCCceEEEEECCCceEEEEe-CCcEEecCCC
Confidence            2100             0111111111  11112467899999996666666 8886555544

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=85.37  E-value=36  Score=35.01  Aligned_cols=62  Identities=18%  Similarity=0.029  Sum_probs=39.0

Q ss_pred             CcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeecc-cccCcccceEEEEECCC----CCEEEEe
Q 006825          456 NGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEK-QEDGHLNMLLLANGSPE----PTSLSPK  521 (630)
Q Consensus       456 t~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~-~~~gh~~~V~svafSpd----g~~lasg  521 (630)
                      -..-+.|+|.|+|+++++ ..++.|++++ .++.  ..+... ...........|+++|+    +.++++-
T Consensus        28 l~~P~~ia~~pdG~l~V~-e~~g~I~~~d-~~G~--~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~   94 (354)
T 3a9g_A           28 LEVPWSIAPLGGGRYLVT-ERPGRLVLIS-PSGK--KLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYA   94 (354)
T ss_dssp             CSCEEEEEEEETTEEEEE-ETTTEEEEEC-SSCE--EEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEE
T ss_pred             CCCCeEEEEcCCCeEEEE-eCCCEEEEEe-CCCc--eEeeccceeecCCCceeeEEeCCCCCcCCEEEEEE
Confidence            345789999999996665 5569999997 3444  222110 11122356789999997    5555544

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=83.15  E-value=58  Score=35.62  Aligned_cols=143  Identities=9%  Similarity=-0.059  Sum_probs=74.8

Q ss_pred             eeEEEeec----ceEeecCC-CccEecccCCCCceeEEecCC--ccCCEEEEEE-------cCCCC-eEEeecCC-C---
Q 006825          342 VQELMRRQ----NVEEGNKD-SFDLNNNGSSGGGMKSKKKGS--WFKSIRTVAS-------SVTGH-KERRSSDE-R---  402 (630)
Q Consensus       342 V~~Lafs~----~laSgS~D-~tvr~vWD~~tG~~~~~lk~g--H~~~V~sVAf-------SpdG~-~lasgS~D-~---  402 (630)
                      ...|+|.|    .|...... ..++ +-|..++........+  .....+.|||       +++|. ++++-..+ .   
T Consensus       141 p~~la~dp~~~~~Lyv~~~~~~~i~-~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~  219 (496)
T 3kya_A          141 NGRLAFDPLNKDHLYICYDGHKAIQ-LIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE  219 (496)
T ss_dssp             EEEEEEETTEEEEEEEEEETEEEEE-EEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred             CCEEEEccCCCCEEEEEECCCCeEE-EEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence            45677875    23333332 4455 6677766655444322  3456899999       99998 44443222 0   


Q ss_pred             ---------CC-ccccC-C-cceE------EEeecCC-C--eEEEecCCcEEEEEeCC-------CCccc-----c----
Q 006825          403 ---------DT-SSEKG-G-RRSS------SATDDSQ-D--VSFHGQERVRVRQYGKS-------CKDLT-----A----  445 (630)
Q Consensus       403 ---------dt-~s~~g-h-~~~V------sa~~~s~-d--~l~Sgs~Dg~VriWd~~-------~~el~-----~----  445 (630)
                               .. +.... . ...+      ..++..+ +  .+++-...++|..+|..       ++.+.     .    
T Consensus       220 ~~~V~~i~r~~~G~~~~~~~~~~v~~~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~  299 (496)
T 3kya_A          220 SPSVYIIKRNADGTFDDRSDIQLIAAYKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNT  299 (496)
T ss_dssp             EEEEEEEECCTTSCCSTTSCEEEEEEESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTT
T ss_pred             CceEEEEecCCCCceeecccceeeccCCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccccc
Confidence                     00 01110 0 0011      1122233 2  24556677888888876       44430     0    


Q ss_pred             eeeeeEecccCcCEEEEEEccCCCE-EEEEeCCCcEEEEECc
Q 006825          446 LYKCQEIQAHNGSIWSIKFSLDGRY-LASAGEDCVIHVWQVV  486 (630)
Q Consensus       446 ~~~v~tL~gHt~~V~sVaFSpDG~~-LASgS~DgtIrVWDl~  486 (630)
                      +..+..+ +....-+.|+|+|+|++ +++=.....|+.++..
T Consensus       300 ~~~l~~~-~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~d  340 (496)
T 3kya_A          300 FKQLFTI-ADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYD  340 (496)
T ss_dssp             EEEEEEC-SSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred             cceeEec-CCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecC
Confidence            0111112 22344679999999995 4444566788886653

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=82.63  E-value=41  Score=36.82  Aligned_cols=148  Identities=7%  Similarity=-0.044  Sum_probs=75.3

Q ss_pred             cEEEEEeCCCCcccceeeeeEecccCcCEEEEEE-------ccCCCEEEEEeCCC-------cEEEEECcC-Ccee----
Q 006825          431 VRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKF-------SLDGRYLASAGEDC-------VIHVWQVVE-SERK----  491 (630)
Q Consensus       431 g~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaF-------SpDG~~LASgS~Dg-------tIrVWDl~t-g~~~----  491 (630)
                      ..|++.|...+.+..+..  .-.+.......|+|       +++|++|+.+...+       .|.+.+... +...    
T Consensus       162 ~~i~~ID~~~~~v~~l~~--~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~  239 (496)
T 3kya_A          162 KAIQLIDLKNRMLSSPLN--INTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSD  239 (496)
T ss_dssp             EEEEEEETTTTEEEEEEC--CTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSC
T ss_pred             CeEEEEECCCCEEEEEEc--cCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcccCceEEEEecCCCCceeeccc
Confidence            568888887765422110  00112345899999       99999666665443       255555333 2221    


Q ss_pred             -eeeecccccCcccceEEEEECC-CCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeC-----CC--CceEE
Q 006825          492 -GELLEKQEDGHLNMLLLANGSP-EPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-----SD--KPICS  562 (630)
Q Consensus       492 -~~l~~~~~~gh~~~V~svafSp-dg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-----sg--k~l~t  562 (630)
                       ..+     . -......++++| ++.++++....+.|...+....... .  ...     .+|..     .+  +.+.+
T Consensus       240 ~~~v-----~-~~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~-~--~tg-----~~~tp~~~~~~g~~~~l~~  305 (496)
T 3kya_A          240 IQLI-----A-AYKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKT-I--KNG-----GSWDPIVKNNPNTFKQLFT  305 (496)
T ss_dssp             EEEE-----E-EESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHH-H--HTT-----CCCCCBGGGCTTTEEEEEE
T ss_pred             ceee-----c-cCCCceEEEEcCCCCeEEEEECCCCEEEEEeccccccc-c--cCc-----eeecccccccccccceeEe
Confidence             111     0 012334678899 4666767767777755444300000 0  000     11100     00  01111


Q ss_pred             eccCCCCEEEEEEcCC-C-eEEEEECCCcEEEEeC
Q 006825          563 FQGHLDDVLDLSWSKS-Q-HLLSSSMDKTVRLWHL  595 (630)
Q Consensus       563 L~GHs~~V~sLafSPd-~-~LaSgS~DgtVrIWDl  595 (630)
                      + +....-..|+|+|+ + ++++=+..+.|+.++.
T Consensus       306 ~-~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~  339 (496)
T 3kya_A          306 I-ADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDY  339 (496)
T ss_dssp             C-SSSSCCEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred             c-CCCCCceEEEEcCCCCEEEEEeCCCCEEEEEec
Confidence            2 22334578999999 6 4566677788888554

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=82.51  E-value=19  Score=35.60  Aligned_cols=66  Identities=11%  Similarity=0.019  Sum_probs=43.1

Q ss_pred             EEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeecccc--cCcccceEEEEECCCCCEEEEeeCCCeee
Q 006825          459 IWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQE--DGHLNMLLLANGSPEPTSLSPKHLDNHLE  528 (630)
Q Consensus       459 V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~--~gh~~~V~svafSpdg~~lasgs~Dg~I~  528 (630)
                      -.++.|.|+|.+.++  .||.|.-|+-.+......+.....  .+--..+..|.+.|+|.+.+..  |+.+.
T Consensus        90 F~a~~fD~~G~LYav--~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~ly  157 (236)
T 1tl2_A           90 FQFLFFDPNGYLYAV--SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFY  157 (236)
T ss_dssp             CSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEE
T ss_pred             ceEEEECCCCCEEEe--CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEE
Confidence            478999999998887  569888887644322222110000  1112457899999999988877  66653

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=80.37  E-value=16  Score=43.28  Aligned_cols=37  Identities=16%  Similarity=0.130  Sum_probs=33.3

Q ss_pred             CEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeee
Q 006825          458 SIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGEL  494 (630)
Q Consensus       458 ~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l  494 (630)
                      .|.+++..++..+|+|-+.|+++|||++.+++++.+.
T Consensus       237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~  273 (950)
T 4gq2_M          237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETI  273 (950)
T ss_dssp             CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred             eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeee
Confidence            5788888889999999999999999999999988764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	630
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	3e-10
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	2e-08
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	5e-06
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	7e-06
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	2e-05
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	2e-09
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	2e-06
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	2e-05
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	2e-04
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	5e-04
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	4e-09
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	8e-06
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	9e-04
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	0.001
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	0.002
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	5e-08
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	4e-07
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	4e-04
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	0.001
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	1e-07
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	5e-06
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	0.004
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	5e-07
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	1e-05
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	5e-05
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	2e-06
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	9e-06
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	1e-04
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	0.001
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	0.003
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	4e-06
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	5e-05
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	2e-05
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	9e-05
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	3e-05
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	4e-04
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	5e-04
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	3e-05
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	1e-04
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	1e-04
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	1e-04
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	3e-05
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	2e-04
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	0.001
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	0.004
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	3e-04
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	0.004
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	3e-04
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	0.004
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	0.001
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	0.002

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 59.4 bits (142), Expect = 3e-10
 Identities = 38/170 (22%), Positives = 71/170 (41%), Gaps = 8/170 (4%)

Query: 447 YKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNML 506
           Y  +    H   +  ++ + DG  +AS   D  + VW V   E K EL       H +++
Sbjct: 134 YCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAEL-----REHRHVV 188

Query: 507 LLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGH 566
              + +PE +  S         KK         S S D  +    V   +   + +  GH
Sbjct: 189 ECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVS--TGMCLMTLVGH 246

Query: 567 LDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYDISLVD 615
            + V  + +    + +LS + DKT+R+W   +K C+K  +  ++ ++ +D
Sbjct: 247 DNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLD 296

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 54.4 bits (129), Expect = 2e-08
 Identities = 30/182 (16%), Positives = 59/182 (32%), Gaps = 16/182 (8%)

Query: 450 QEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGEL---------LEKQED 500
             +  H   +  + F      + SA ED  I VW     + +  L         +     
Sbjct: 11  YALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHS 70

Query: 501 GHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPET------VFA 554
           G L     A+ + +            +       S      + DH+V             
Sbjct: 71  GKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEV 130

Query: 555 LSDKPICSFQGHLDDVLDLSWSK-SQHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYDISL 613
            +   + +F GH + V  +  ++    + S S D+TVR+W +++K C        + +  
Sbjct: 131 QTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVEC 190

Query: 614 VD 615
           + 
Sbjct: 191 IS 192

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 46.3 bits (108), Expect = 5e-06
 Identities = 8/58 (13%), Positives = 21/58 (36%), Gaps = 1/58 (1%)

Query: 558 KPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYDISLV 614
               +  GH   V  + +      ++S+S D T+++W   +    +        +  +
Sbjct: 8   PEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDI 65

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 46.3 bits (108), Expect = 7e-06
 Identities = 9/43 (20%), Positives = 17/43 (39%)

Query: 442 DLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQ 484
           D       + + AH   + S+ F     Y+ +   D  + VW+
Sbjct: 275 DYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 317

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 44.3 bits (103), Expect = 2e-05
 Identities = 24/156 (15%), Positives = 57/156 (36%), Gaps = 10/156 (6%)

Query: 440 CKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQE 499
              +       E++ H   +  I ++ +  Y + +                   LL    
Sbjct: 169 VWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPF---LLSGSR 225

Query: 500 DGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDK 558
           D  + M  ++ G    T +   +    +     G+ I   S + D  +    V+   + +
Sbjct: 226 DKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFI--LSCADDKTLR---VWDYKNKR 280

Query: 559 PICSFQGHLDDVLDLSWSK-SQHLLSSSMDKTVRLW 593
            + +   H   V  L + K + ++++ S+D+TV++W
Sbjct: 281 CMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVW 316

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 57.1 bits (136), Expect = 2e-09
 Identities = 21/147 (14%), Positives = 42/147 (28%), Gaps = 28/147 (19%)

Query: 450 QEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLA 509
           Q    H   I +I F  +G   A+  +D    ++ +   +             +  +   
Sbjct: 220 QTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSF- 278

Query: 510 NGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVF-ALSDKPICSFQGHLD 568
             S     L   + D +                         V+ AL         GH +
Sbjct: 279 --SKSGRLLLAGYDDFNC-----------------------NVWDALKADRAGVLAGHDN 313

Query: 569 DVLDLSWSK-SQHLLSSSMDKTVRLWH 594
            V  L  +     + + S D  +++W+
Sbjct: 314 RVSCLGVTDDGMAVATGSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 47.8 bits (112), Expect = 2e-06
 Identities = 7/42 (16%), Positives = 17/42 (40%)

Query: 442 DLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVW 483
           D     +   +  H+  +  +  + DG  +A+   D  + +W
Sbjct: 298 DALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 44.3 bits (103), Expect = 2e-05
 Identities = 21/185 (11%), Positives = 58/185 (31%), Gaps = 19/185 (10%)

Query: 450 QEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGEL---------LEKQED 500
           + ++ H   I+++ +  D R L SA +D  + +W    + +   +               
Sbjct: 49  RTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPS 108

Query: 501 GHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPI 560
           G+       +      +L  +  +  + ++  G +               T    +   +
Sbjct: 109 GNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCAL 168

Query: 561 CSFQGHLDDVLDLSWSKS----------QHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYD 610
              +           +            +  +S + D + +LW +    C + F+  + D
Sbjct: 169 WDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESD 228

Query: 611 ISLVD 615
           I+ + 
Sbjct: 229 INAIC 233

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 41.6 bits (96), Expect = 2e-04
 Identities = 15/100 (15%), Positives = 34/100 (34%), Gaps = 5/100 (5%)

Query: 521 KHLDNHLEKKRRGRSINRKSLS----LDHMVVPETVFALSDKPICSFQGHLDDVLDLSWS 576
             L    E+ +      RK+ +           + V  +  +   + +GHL  +  + W 
Sbjct: 5   DQLRQEAEQLKNQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYAMHWG 64

Query: 577 K-SQHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYDISLVD 615
             S+ L+S+S D  + +W   +   +         +    
Sbjct: 65  TDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCA 104

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 40.5 bits (93), Expect = 5e-04
 Identities = 27/170 (15%), Positives = 51/170 (30%), Gaps = 26/170 (15%)

Query: 447 YKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNML 506
            +      H G + S+  + D R   S   D    +W V E   +         GH + +
Sbjct: 175 QQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTF-----TGHESDI 229

Query: 507 LLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGH 566
                 P   + +                    + S D       + A  +    S    
Sbjct: 230 NAICFFPNGNAFA--------------------TGSDDATCRLFDLRADQELMTYSHDNI 269

Query: 567 LDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYDISLVD 615
           +  +  +S+SKS + LL+   D    +W         + +  D  +S + 
Sbjct: 270 ICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLG 319

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 56.3 bits (134), Expect = 4e-09
 Identities = 27/174 (15%), Positives = 55/174 (31%), Gaps = 24/174 (13%)

Query: 430 RVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESE 489
            VRV              + +    H  S++S+ F+ DG+ + S   D  + +W +  + 
Sbjct: 228 AVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNAN 287

Query: 490 RKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVP 549
            K +             +         + +    D ++            S S D  V+ 
Sbjct: 288 NKSDSKTPNSGTCEVTYIGHKDFVLSVATTQN--DEYI-----------LSGSKDRGVL- 333

Query: 550 ETVFALSD-KPICSFQGHLDDVLDLSWSKS-------QHLLSSSMDKTVRLWHL 595
              +      P+   QGH + V+ ++ +             + S D   R+W  
Sbjct: 334 --FWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKY 385

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.3 bits (108), Expect = 8e-06
 Identities = 35/186 (18%), Positives = 66/186 (35%), Gaps = 14/186 (7%)

Query: 440 CKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQE 499
             DL        +   +G         DG+Y+A+   D  + VW          L  + E
Sbjct: 189 IWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENE 248

Query: 500 D--GHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSD 557
              GH + +     + +  S+    LD  ++      + N+      +          S 
Sbjct: 249 SGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPN----------SG 298

Query: 558 KPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYDISLVD 615
               ++ GH D VL ++ +++ +++LS S D+ V  W   S   L +   H +  IS+  
Sbjct: 299 TCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAV 358

Query: 616 RLMLRF 621
                 
Sbjct: 359 ANGSSL 364

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.8 bits (91), Expect = 9e-04
 Identities = 35/221 (15%), Positives = 73/221 (33%), Gaps = 24/221 (10%)

Query: 410 GRRSSSATDDS-QDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDG 468
           G   ++  + + Q         V       +              + +  I S+ FS DG
Sbjct: 74  GEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDG 133

Query: 469 RYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLE 528
           ++LA+  ED +I +W +   +    L   ++D +      +       S         L 
Sbjct: 134 KFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLR 193

Query: 529 KKRRGRSINRKSLSLDHMVVPETVFALS----------------------DKPICSFQGH 566
             +   +++ +       V P     ++                      D    S  GH
Sbjct: 194 TGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGH 253

Query: 567 LDDVLDLSWSK-SQHLLSSSMDKTVRLWHLSSKTCLKIFSH 606
            D V  + +++  Q ++S S+D++V+LW+L +         
Sbjct: 254 KDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKT 294

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.4 bits (90), Expect = 0.001
 Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 1/40 (2%)

Query: 455 HNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGEL 494
           H   +  +KFS DG YLA+ G +    V++V +      L
Sbjct: 61  HTSVVCCVKFSNDGEYLAT-GCNKTTQVYRVSDGSLVARL 99

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.2 bits (87), Expect = 0.002
 Identities = 12/93 (12%), Positives = 35/93 (37%)

Query: 538 RKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSS 597
           +K  +  +++    +    D  +     H   V  + +S     L++  +KT +++ +S 
Sbjct: 33  KKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEYLATGCNKTTQVYRVSD 92

Query: 598 KTCLKIFSHSDYDISLVDRLMLRFAYGAFLNVK 630
            + +   S         + L    +  + L ++
Sbjct: 93  GSLVARLSDDSAANKDPENLNTSSSPSSDLYIR 125

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 52.7 bits (124), Expect = 5e-08
 Identities = 15/53 (28%), Positives = 22/53 (41%), Gaps = 4/53 (7%)

Query: 450 QEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGH 502
           Q    HN +I ++  S DG+ L SA  +  I+ W +      G       D H
Sbjct: 6   QVRYGHNKAITALSSSADGKTLFSADAEGHINSWDI----STGISNRVFPDVH 54

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 49.6 bits (116), Expect = 4e-07
 Identities = 11/50 (22%), Positives = 21/50 (42%), Gaps = 3/50 (6%)

Query: 563 FQGHLDDVLDLSWSK-SQHLLSSSMDKTVRLWHLSSKTCLKIFS--HSDY 609
             GH   +  LS S   + L S+  +  +  W +S+    ++F   H+  
Sbjct: 8   RYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATM 57

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 40.4 bits (92), Expect = 4e-04
 Identities = 11/38 (28%), Positives = 15/38 (39%)

Query: 448 KCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQV 485
                 AH  S  +    L+   + SAG+D  I  W V
Sbjct: 260 PIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWNV 297

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 39.2 bits (89), Expect = 0.001
 Identities = 13/58 (22%), Positives = 26/58 (44%), Gaps = 1/58 (1%)

Query: 540 SLSLDHMVVPETVFALSDKPICSFQGHLDDVL-DLSWSKSQHLLSSSMDKTVRLWHLS 596
           + SLD+ V+   +   SD PI     H    +  + W     ++S+  D  ++ W++ 
Sbjct: 241 TGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWNVP 298

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 51.4 bits (121), Expect = 1e-07
 Identities = 11/50 (22%), Positives = 17/50 (34%)

Query: 453 QAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGH 502
           QA    I  IK       L     D  + V++     +  +LL+     H
Sbjct: 8   QAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKH 57

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.8 bits (109), Expect = 5e-06
 Identities = 8/46 (17%), Positives = 16/46 (34%), Gaps = 1/46 (2%)

Query: 563 FQGHLDDVLDLSWS-KSQHLLSSSMDKTVRLWHLSSKTCLKIFSHS 607
            Q   D + D+        LL +S D ++ ++    +        S
Sbjct: 7   EQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQS 52

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.5 bits (85), Expect = 0.004
 Identities = 9/57 (15%), Positives = 21/57 (36%), Gaps = 1/57 (1%)

Query: 558 KPICSFQGHLDDVLDLSWSKSQHLLSS-SMDKTVRLWHLSSKTCLKIFSHSDYDISL 613
           +           V  + +S     L +   D  +  W+L ++  +K F+  + D  +
Sbjct: 242 RLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVV 298

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.6 bits (116), Expect = 5e-07
 Identities = 15/59 (25%), Positives = 25/59 (42%), Gaps = 7/59 (11%)

Query: 556 SDKPICSFQGHLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYDISLV 614
            D+ + +  GH   +  L+ +    L+S S D  +  W  SS        HS+  +SL 
Sbjct: 2   HDEVLKTISGHNKGITALTVNP---LISGSYDGRIMEWSSSSMHQ----DHSNLIVSLD 53

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.0 bits (104), Expect = 1e-05
 Identities = 12/37 (32%), Positives = 18/37 (48%)

Query: 558 KPICSFQGHLDDVLDLSWSKSQHLLSSSMDKTVRLWH 594
           K I +   H D V +L W     L+SS  D  ++ W+
Sbjct: 249 KIIKALNAHKDGVNNLLWETPSTLVSSGADACIKRWN 285

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.0 bits (99), Expect = 5e-05
 Identities = 10/37 (27%), Positives = 17/37 (45%), Gaps = 1/37 (2%)

Query: 450 QEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVV 486
           + + AH   + ++ +      L S+G D  I  W VV
Sbjct: 252 KALNAHKDGVNNLLWETPST-LVSSGADACIKRWNVV 287

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.3 bits (113), Expect = 2e-06
 Identities = 8/39 (20%), Positives = 17/39 (43%)

Query: 448 KCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVV 486
                   + S+ S   S+D +Y+ +   D    V++V+
Sbjct: 298 ASIFQSKESSSVLSCDISVDDKYIVTGSGDKKATVYEVI 336

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.0 bits (107), Expect = 9e-06
 Identities = 12/64 (18%), Positives = 25/64 (39%), Gaps = 1/64 (1%)

Query: 455 HNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPE 514
           H   + ++  S   R++ + G+ CV  VW +     K  + +       N +      P+
Sbjct: 50  HGEVVCAVTISNPTRHVYTGGKGCV-KVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPD 108

Query: 515 PTSL 518
             +L
Sbjct: 109 GCTL 112

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.5 bits (98), Expect = 1e-04
 Identities = 10/73 (13%), Positives = 25/73 (34%)

Query: 422 DVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIH 481
                G+      +               ++  H   + S+KF+  G++  S G+D +++
Sbjct: 231 GYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLN 290

Query: 482 VWQVVESERKGEL 494
            W+        + 
Sbjct: 291 AWRTPYGASIFQS 303

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.4 bits (90), Expect = 0.001
 Identities = 9/54 (16%), Positives = 17/54 (31%), Gaps = 1/54 (1%)

Query: 561 CSFQGHLDDVLDLSWSK-SQHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYDISL 613
                H   VL L ++   +  +S+  D  +  W       +     S   +S 
Sbjct: 259 YQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSC 312

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.5 bits (85), Expect = 0.003
 Identities = 8/45 (17%), Positives = 16/45 (35%)

Query: 565 GHLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFSHSDY 609
            H + V  ++ S     + +     V++W +S        S  D 
Sbjct: 49  NHGEVVCAVTISNPTRHVYTGGKGCVKVWDISHPGNKSPVSQLDC 93

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.7 bits (109), Expect = 4e-06
 Identities = 12/58 (20%), Positives = 22/58 (37%)

Query: 558 KPICSFQGHLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYDISLVD 615
           K     +GH D V+         ++S S D T+++W   +  CL+        +    
Sbjct: 7   KSPKVLKGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQ 64

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.3 bits (100), Expect = 5e-05
 Identities = 21/175 (12%), Positives = 49/175 (28%), Gaps = 21/175 (12%)

Query: 450 QEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLA 509
           + ++ H+  + +      G  + S  +D  + VW  V  +    L      GH   +  +
Sbjct: 10  KVLKGHDDHVITC-LQFCGNRIVSGSDDNTLKVWSAVTGKCLRTL-----VGHTGGVWSS 63

Query: 510 NGSPEPTSLSPKHLDNHLEKKRRG-----RSINRKSLSLDHMVVPETVFALSDKPICSFQ 564
                            +     G        +  ++   H+     V    D  +  + 
Sbjct: 64  QMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWD 123

Query: 565 ----------GHLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFSHSDY 609
                           +       + ++S + D  V++W   ++TCL        
Sbjct: 124 IETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTN 178

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.5 bits (103), Expect = 2e-05
 Identities = 10/54 (18%), Positives = 26/54 (48%)

Query: 562 SFQGHLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYDISLVD 615
           + +GH+  V+     +  ++++ + DK +R++   +K  L   S  D  +  + 
Sbjct: 7   TLRGHMTSVITCLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALK 60

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.6 bits (98), Expect = 9e-05
 Identities = 16/158 (10%), Positives = 49/158 (31%), Gaps = 26/158 (16%)

Query: 452 IQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANG 511
           ++ H  S+ +     +  Y+ +  +D +I V+  +  +   +L      GH   +     
Sbjct: 8   LRGHMTSVITC-LQFEDNYVITGADDKMIRVYDSINKKFLLQL-----SGHDGGVWALKY 61

Query: 512 SPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVL 571
           +     +S                      +   + V +                +  + 
Sbjct: 62  AHGGILVS--------------------GSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLD 101

Query: 572 DLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFSHSDY 609
            + +   +++++ S D T+ +W L  ++ +        
Sbjct: 102 IVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHD 139

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.5 bits (103), Expect = 3e-05
 Identities = 29/241 (12%), Positives = 69/241 (28%), Gaps = 9/241 (3%)

Query: 372 KSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDV-SFHGQER 430
           + + K   F+ +  + S +  H                 R  ++    +  +  FH    
Sbjct: 99  EDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFAD 158

Query: 431 VRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESER 490
                       L      +     +    S+  S  G  +A+   +  + + ++     
Sbjct: 159 ESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRP 217

Query: 491 KGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPE 550
                 +    + +  + +       SL     D++                    +   
Sbjct: 218 LYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEF-----GERIGSL 272

Query: 551 TVFALSDKPICSFQGHLDDVLDLSWS-KSQHLLSSSMDKTVRLWHLSSKTCLKIFS-HSD 608
           +V   S +       H   V+ LS++   + L S+  D  +R W + +K  +   + H D
Sbjct: 273 SVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCD 332

Query: 609 Y 609
            
Sbjct: 333 D 333

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.6 bits (93), Expect = 4e-04
 Identities = 8/46 (17%), Positives = 17/46 (36%), Gaps = 1/46 (2%)

Query: 562 SFQGHLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFSHS 607
           + + H  D+  +S   +   +S S D  +++W             S
Sbjct: 9   AGKAHDADIFSVSAC-NSFTVSCSGDGYLKVWDNKLLDNENPKDKS 53

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.2 bits (92), Expect = 5e-04
 Identities = 17/167 (10%), Positives = 42/167 (25%), Gaps = 12/167 (7%)

Query: 453 QAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGS 512
           +AH+  I+S+       +  S   D  + VW   +        +K     ++   L +  
Sbjct: 11  KAHDADIFSVSAC--NSFTVSCSGDGYLKVWD-NKLLDNENPKDKSYSHFVHKSGLHHVD 67

Query: 513 PEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLD 572
                         +        +    ++ +               +            
Sbjct: 68  VLQAIERDAFELCLVATTSFSGDLLFYRITREDETK---KVIFEKLDLLDSDMKKHSFWA 124

Query: 573 LSWSKS------QHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYDISL 613
           L W  S        L+++ +  T  +W              ++  +L
Sbjct: 125 LKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTL 171

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.7 bits (101), Expect = 3e-05
 Identities = 11/53 (20%), Positives = 23/53 (43%), Gaps = 2/53 (3%)

Query: 558 KPICSFQGHLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDY 609
           + I         V  L +   Q ++S   D T+++W  ++  C +I + H+  
Sbjct: 6   QRIHCRSETSKGVYCLQYD-DQKIVSGLRDNTIKIWDKNTLECKRILTGHTGS 57

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.1 bits (97), Expect = 1e-04
 Identities = 11/63 (17%), Positives = 25/63 (39%), Gaps = 4/63 (6%)

Query: 423 VSFHGQERVRVRQY--GKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVI 480
           VS     +++V         +        + +  H+G ++ ++F  D   + S+  D  I
Sbjct: 232 VSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTI 289

Query: 481 HVW 483
            +W
Sbjct: 290 LIW 292

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.1 bits (97), Expect = 1e-04
 Identities = 25/176 (14%), Positives = 61/176 (34%), Gaps = 14/176 (7%)

Query: 450 QEIQAHNGSIWSIK-FSLDGRYLASAGEDCVIHVWQVVESERKGEL-------LEKQEDG 501
           Q I   + +   +     D + + S   D  I +W     E K  L       L  Q D 
Sbjct: 6   QRIHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDE 65

Query: 502 HLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPIC 561
            + +   ++ +     ++   + N L          R +  +      +   A+ D    
Sbjct: 66  RVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASP 125

Query: 562 SFQGHL------DDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYDI 611
           +              +++     ++++S+S D+T+++W+ S+   ++  +     I
Sbjct: 126 TDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGI 181

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.1 bits (97), Expect = 1e-04
 Identities = 22/149 (14%), Positives = 46/149 (30%), Gaps = 22/149 (14%)

Query: 446 LYKCQEIQAHNGSIWSIKF-SLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLN 504
              C+ ++  NG    I       R + S   D  I +W +      G  L   E     
Sbjct: 165 TSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDI----ECGACLRVLEGHEEL 220

Query: 505 MLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQ 564
           +        +   +     D  ++      +++ ++ +                 + +  
Sbjct: 221 V---RCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPA-------------GTLCLRTLV 264

Query: 565 GHLDDVLDLSWSKSQHLLSSSMDKTVRLW 593
            H   V  L +     ++SSS D T+ +W
Sbjct: 265 EHSGRVFRLQFD-EFQIVSSSHDDTILIW 292

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 44.1 bits (102), Expect = 3e-05
 Identities = 9/35 (25%), Positives = 18/35 (51%)

Query: 450 QEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQ 484
            E++ HNG +  + ++ D   + + G D   +VW 
Sbjct: 45  HELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWT 79

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 41.4 bits (95), Expect = 2e-04
 Identities = 20/156 (12%), Positives = 45/156 (28%), Gaps = 34/156 (21%)

Query: 447 YKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNML 506
                + +    + ++ F  +   +A+ G DC   ++    +  K               
Sbjct: 234 MAVATLASETLPLLAVTFITESSLVAA-GHDCFPVLFTYDSAAGKLSF------------ 280

Query: 507 LLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGH 566
                           LD   +  +RG +   +  +LD      +    +         H
Sbjct: 281 -------------GGRLDVPKQSSQRGLTARERFQNLDKKA---SSEGSAAAGAGLDSLH 324

Query: 567 LDDVLDLSWS-----KSQHLLSSSMDKTVRLWHLSS 597
            + V  +S       K     ++ MD  + +W + S
Sbjct: 325 KNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRS 360

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 39.1 bits (89), Expect = 0.001
 Identities = 6/38 (15%), Positives = 15/38 (39%), Gaps = 1/38 (2%)

Query: 558 KPICSFQGHLDDVLDLSWS-KSQHLLSSSMDKTVRLWH 594
             +   + H   V  + W+  S  +++   D+   +W 
Sbjct: 42  VQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWT 79

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 37.5 bits (85), Expect = 0.004
 Identities = 4/28 (14%), Positives = 12/28 (42%)

Query: 458 SIWSIKFSLDGRYLASAGEDCVIHVWQV 485
            I    ++ D   +A    +  +H+++ 
Sbjct: 9   PISCHAWNKDRTQIAICPNNHEVHIYEK 36

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 40.9 bits (94), Expect = 3e-04
 Identities = 11/85 (12%), Positives = 23/85 (27%)

Query: 410 GRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGR 469
            R            + +  +      Y              +      S +S+  S DG 
Sbjct: 233 MREVRIMDVFYFSTAVNPAKTRAFGAYNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGS 292

Query: 470 YLASAGEDCVIHVWQVVESERKGEL 494
            +   G    +  +     E+KG++
Sbjct: 293 TVWLGGALGDLAAYDAETLEKKGQV 317

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 37.1 bits (84), Expect = 0.004
 Identities = 11/192 (5%), Positives = 29/192 (15%), Gaps = 8/192 (4%)

Query: 418 DDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGED 477
                +++                         E +             D   + +  E 
Sbjct: 135 RQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHES 194

Query: 478 C-VIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSI 536
             V+        +             L  + L  G      +                ++
Sbjct: 195 SGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMD------VFYFSTAV 248

Query: 537 NRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSK-SQHLLSSSMDKTVRLWHL 595
           N               F L                 ++ S     +        +  +  
Sbjct: 249 NPAKTRAFGAYNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGALGDLAAYDA 308

Query: 596 SSKTCLKIFSHS 607
            +          
Sbjct: 309 ETLEKKGQVDLP 320

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 41.0 bits (94), Expect = 3e-04
 Identities = 11/110 (10%), Positives = 27/110 (24%), Gaps = 2/110 (1%)

Query: 378 SWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYG 437
                  T  +      +               R            S            G
Sbjct: 234 KLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQG 293

Query: 438 KSCKDLTALY--KCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQV 485
              K +   Y  K +++     ++  ++ S D + +    +D  I+ + +
Sbjct: 294 APEKGVLLKYDVKTRKVTEVKNNLTDLRLSADRKTVMVRKDDGKIYTFPL 343

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 37.5 bits (85), Expect = 0.004
 Identities = 12/158 (7%), Positives = 31/158 (19%), Gaps = 29/158 (18%)

Query: 448 KCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQE--DGHLNM 505
           K   I    GS    K         +   D      +                 +  + +
Sbjct: 219 KPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILI 278

Query: 506 LLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQG 565
             +                  L                         + +  + +     
Sbjct: 279 YSVPVHGEFAAYYQGAPEKGVLL-----------------------KYDVKTRKV---TE 312

Query: 566 HLDDVLDLSWSK-SQHLLSSSMDKTVRLWHLSSKTCLK 602
             +++ DL  S   + ++    D  +  + L      +
Sbjct: 313 VKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPEDER 350

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 39.5 bits (90), Expect = 0.001
 Identities = 12/80 (15%), Positives = 22/80 (27%), Gaps = 7/80 (8%)

Query: 405 SSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKF 464
            + +G       T     + +     V           + +L   +    H+      K 
Sbjct: 14  RTARGTAVVLGNTPAGDKIQYCNGTSVYTV-------PVGSLTDTEIYTEHSHQTTVAKT 66

Query: 465 SLDGRYLASAGEDCVIHVWQ 484
           S  G Y AS      + +W 
Sbjct: 67  SPSGYYCASGDVHGNVRIWD 86

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 38.2 bits (87), Expect = 0.002
 Identities = 7/51 (13%), Positives = 16/51 (31%)

Query: 444 TALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGEL 494
               K  +    + + + + F   G  L   G    + V+     E+   +
Sbjct: 279 LKQRKLIKAANLDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNI 329

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	630
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	99.98
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.98
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	99.97
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	99.97
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	99.97
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.97
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.97
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.96
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.96
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.96
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.96
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.95
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.95
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.94
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.94
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.94
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.94
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.93
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.91
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.9
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.9
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.88
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.82
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.81
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.81
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.8
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.79
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.78
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.75
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.74
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.74
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.72
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.71
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.67
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.65
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.52
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.48
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.43
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.39
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.35
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.13
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.07
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	98.83
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.73
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	98.72
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	98.51
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	98.47
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.46
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	98.45
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	98.24
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.19
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.18
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.16
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.08
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	97.99
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	97.9
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	97.81
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	97.81
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	97.74
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	97.74
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	97.17
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	97.14
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	97.04
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	97.02
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	96.88
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	95.04
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	91.11
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	83.49
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	82.51

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=7.6e-35  Score=285.93  Aligned_cols=262  Identities=18%  Similarity=0.249  Sum_probs=233.5

Q ss_pred             cceeeecCccceeEEEeec---ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCC----
Q 006825          331 EFEMCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERD----  403 (630)
Q Consensus       331 ef~~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~d----  403 (630)
                      +..+|.||+..|++|+|+|   .|+|||.|++|+ +||+.+++.+.+++ +|...|.+++|+|++.+++++..+..    
T Consensus         9 ~~~~L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~-iWd~~~~~~~~~~~-~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~   86 (317)
T d1vyhc1           9 EKYALSGHRSPVTRVIFHPVFSVMVSASEDATIK-VWDYETGDFERTLK-GHTDSVQDISFDHSGKLLASCSADMTIKLW   86 (317)
T ss_dssp             CSCEEECCSSCEEEEEECSSSSEEEEEESSSCEE-EEETTTCCCCEEEC-CCSSCEEEEEECTTSSEEEEEETTSCCCEE
T ss_pred             ccEEEcCCCCCeEEEEEcCCCCEEEEEeCCCeEE-EEECCCCCEEEEEe-CCCCcEEEEeeecccccccccccccccccc
Confidence            3467899999999999998   799999999999 99999999999999 99999999999999999999887761    


Q ss_pred             -------CccccCCcceEEEeecCCCe--EEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEE
Q 006825          404 -------TSSEKGGRRSSSATDDSQDV--SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASA  474 (630)
Q Consensus       404 -------t~s~~gh~~~Vsa~~~s~d~--l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASg  474 (630)
                             .....+|...+.+..+.+++  +++++.|+.+++|+..+++     .+..+.+|...+.+++|+|++++|+++
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~l~~~  161 (317)
T d1vyhc1          87 DFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGY-----CVKTFTGHREWVRMVRPNQDGTLIASC  161 (317)
T ss_dssp             ETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCC-----EEEEEECCSSCEEEEEECTTSSEEEEE
T ss_pred             cccccccccccccccccceeeeccCCCceEEeeccCcceeEeecccce-----eeeEEccCCCcceeeecccCCCEEEEE
Confidence                   12267788888888888877  8999999999999997764     467889999999999999999999999


Q ss_pred             eCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCC--------------------CEEEEeeCCCeeeeecccc
Q 006825          475 GEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEP--------------------TSLSPKHLDNHLEKKRRGR  534 (630)
Q Consensus       475 S~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg--------------------~~lasgs~Dg~I~i~~~~~  534 (630)
                      +.|++|++|++.++.....+     .+|...+..+.++|+.                    .++++++.|+.|       
T Consensus       162 ~~d~~v~~~~~~~~~~~~~~-----~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i-------  229 (317)
T d1vyhc1         162 SNDQTVRVWVVATKECKAEL-----REHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTI-------  229 (317)
T ss_dssp             ETTSCEEEEETTTCCEEEEE-----CCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEE-------
T ss_pred             eCCCeEEEEeeccceeeEEE-----ecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEE-------
Confidence            99999999999998887774     6788889999888764                    346666666666       


Q ss_pred             cccccccccCccccccEEEeC-CCCceEEeccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCCCcEEEEEe-cCCceE
Q 006825          535 SINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYDI  611 (630)
Q Consensus       535 ~~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg~~l~t~~-H~~~V~  611 (630)
                                      ++|++ +++++.++.+|...|.+++|+|+ .+|++|+.||+|+|||+.+++++.++. |...|+
T Consensus       230 ----------------~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~V~  293 (317)
T d1vyhc1         230 ----------------KMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVT  293 (317)
T ss_dssp             ----------------EEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEE
T ss_pred             ----------------EEEECCCCcEEEEEeCCCCCEEEEEECCCCCEEEEEECCCeEEEEECCCCcEEEEEcCCCCCEE
Confidence                            88888 78899999999999999999999 999999999999999999999999998 999999


Q ss_pred             EEE-cCCCcEEEEecce
Q 006825          612 SLV-DRLMLRFAYGAFL  627 (630)
Q Consensus       612 sVa-s~~~~~lAsgs~~  627 (630)
                      +|+ ++++..|++++.+
T Consensus       294 ~~~~s~~~~~l~s~s~D  310 (317)
T d1vyhc1         294 SLDFHKTAPYVVTGSVD  310 (317)
T ss_dssp             EEEECSSSSCEEEEETT
T ss_pred             EEEEcCCCCEEEEEeCC
Confidence            999 8888888888765

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.9e-33  Score=281.40  Aligned_cols=229  Identities=13%  Similarity=0.072  Sum_probs=198.1

Q ss_pred             eeeecCccceeEEEeec---ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCC-----
Q 006825          333 EMCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDT-----  404 (630)
Q Consensus       333 ~~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt-----  404 (630)
                      .+|.||...|++|+|+|   +||||+.|++|+ +||+.+++.+.++. +|...|.+++|+|+|+++++++.|...     
T Consensus        49 ~tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~-iWd~~~~~~~~~~~-~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~~~  126 (340)
T d1tbga_          49 RTLRGHLAKIYAMHWGTDSRLLVSASQDGKLI-IWDSYTTNKVHAIP-LRSSWVMTCAYAPSGNYVACGGLDNICSIYNL  126 (340)
T ss_dssp             EEECCCSSCEEEEEECTTSSEEEEEETTTEEE-EEETTTTEEEEEEE-CSCSCEEEEEECTTSSEEEEEETTCCEEEEES
T ss_pred             EEECCCCCCEEEEEECCCCCEEEEEECCCcee-eeecccceeEEEEe-cccccEEeeEeeccceeeeeecccceeecccc
Confidence            67899999999999998   799999999999 99999999999999 999999999999999999999887600     


Q ss_pred             ----------cccc-----------------------------------------CCcceEEEeecCCCe--EEEecCCc
Q 006825          405 ----------SSEK-----------------------------------------GGRRSSSATDDSQDV--SFHGQERV  431 (630)
Q Consensus       405 ----------~s~~-----------------------------------------gh~~~Vsa~~~s~d~--l~Sgs~Dg  431 (630)
                                ..+.                                         .+...+....+.+..  ++++..|+
T Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  206 (340)
T d1tbga_         127 KTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDA  206 (340)
T ss_dssp             SSSCSCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTT
T ss_pred             cccccccccceecccccccccccccccccccccccccccccccccccccccccccccceeEeeeccccccceeEEeecCc
Confidence                      0011                                         122223333343333  78999999


Q ss_pred             EEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEE
Q 006825          432 RVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANG  511 (630)
Q Consensus       432 ~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svaf  511 (630)
                      .|++||...++     +++++.+|...|++|+|+|++++|++|+.|++|++|++........+.   ...+...|..++|
T Consensus       207 ~v~i~d~~~~~-----~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~---~~~~~~~i~~~~~  278 (340)
T d1tbga_         207 SAKLWDVREGM-----CRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYS---HDNIICGITSVSF  278 (340)
T ss_dssp             EEEEEETTTTE-----EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC---CTTCCSCEEEEEE
T ss_pred             eEEEEECCCCc-----EEEEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeecccccccccc---cccccCceEEEEE
Confidence            99999987764     577899999999999999999999999999999999999887665532   3566778999999


Q ss_pred             CCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeC-CCCceEEeccCCCCEEEEEEcCC-CeEEEEECCCc
Q 006825          512 SPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKT  589 (630)
Q Consensus       512 Spdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL~GHs~~V~sLafSPd-~~LaSgS~Dgt  589 (630)
                      +|++.+|++++.|+.|                       ++|++ +++++.++.+|...|++|+|+|+ .+|+|||.||+
T Consensus       279 s~~~~~l~~g~~dg~i-----------------------~iwd~~~~~~~~~~~~H~~~V~~l~~s~d~~~l~s~s~Dg~  335 (340)
T d1tbga_         279 SKSGRLLLAGYDDFNC-----------------------NVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSF  335 (340)
T ss_dssp             CSSSCEEEEEETTSCE-----------------------EEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTSC
T ss_pred             CCCCCEEEEEECCCEE-----------------------EEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEccCCE
Confidence            9999999999999999                       88887 78999999999999999999999 89999999999


Q ss_pred             EEEEe
Q 006825          590 VRLWH  594 (630)
Q Consensus       590 VrIWD  594 (630)
                      |+|||
T Consensus       336 v~iWd  340 (340)
T d1tbga_         336 LKIWN  340 (340)
T ss_dssp             EEEEC
T ss_pred             EEEeC
Confidence            99997

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4e-32  Score=278.71  Aligned_cols=260  Identities=15%  Similarity=0.117  Sum_probs=226.4

Q ss_pred             cceeeecCccceeEEEeec---ceEeecCCCccEecccCCCCcee---EEe-cCCccCCEEEEEEcCCCCeEEeecCCC-
Q 006825          331 EFEMCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMK---SKK-KGSWFKSIRTVASSVTGHKERRSSDER-  402 (630)
Q Consensus       331 ef~~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~---~~l-k~gH~~~V~sVAfSpdG~~lasgS~D~-  402 (630)
                      .+.++ +|+..|.+|+|+|   +|++|+ |++|+ |||+.++...   ..+ ..+|...|++|+|+|+|++|++++.|+ 
T Consensus        44 ~~~~~-~H~~~V~~v~fs~~g~~latg~-dg~V~-iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~  120 (337)
T d1gxra_          44 QINTL-NHGEVVCAVTISNPTRHVYTGG-KGCVK-VWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEAST  120 (337)
T ss_dssp             EEEEE-CCSSCCCEEEECSSSSEEEEEC-BSEEE-EEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSE
T ss_pred             EEEEC-CCCCcEEEEEECCCCCEEEEEE-CCEEE-EEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEeecccc
Confidence            33555 8999999999999   799988 78999 9999875432   222 238999999999999999999999887 


Q ss_pred             ----CC--------ccccCCcceEEEeecCCCe--EEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCC
Q 006825          403 ----DT--------SSEKGGRRSSSATDDSQDV--SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDG  468 (630)
Q Consensus       403 ----dt--------~s~~gh~~~Vsa~~~s~d~--l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG  468 (630)
                          +.        ....+|...+....++++.  +++++.++.|++|+..+++     +...+.+|...|++++|++++
T Consensus       121 i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~-----~~~~~~~~~~~v~~l~~s~~~  195 (337)
T d1gxra_         121 LSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQT-----LVRQFQGHTDGASCIDISNDG  195 (337)
T ss_dssp             EEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE-----EEEEECCCSSCEEEEEECTTS
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccc-----ccccccccccccccccccccc
Confidence                11        1256788889999998887  8899999999999998764     456788999999999999999


Q ss_pred             CEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCcccc
Q 006825          469 RYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVV  548 (630)
Q Consensus       469 ~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~  548 (630)
                      .++++|+.|++|++||+.+++.+..      ..|...|.+++|+|++.++++++.|+.+                     
T Consensus       196 ~~~~~~~~d~~v~i~d~~~~~~~~~------~~~~~~i~~l~~~~~~~~l~~~~~d~~i---------------------  248 (337)
T d1gxra_         196 TKLWTGGLDNTVRSWDLREGRQLQQ------HDFTSQIFSLGYCPTGEWLAVGMESSNV---------------------  248 (337)
T ss_dssp             SEEEEEETTSEEEEEETTTTEEEEE------EECSSCEEEEEECTTSSEEEEEETTSCE---------------------
T ss_pred             cccccccccccccccccccceeecc------cccccceEEEEEcccccccceecccccc---------------------
Confidence            9999999999999999999887766      3577889999999999999999999999                     


Q ss_pred             ccEEEeCCCCceEEeccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCCCcEEEEEecCCceEEEE-cCCCcEEEEecc
Q 006825          549 PETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYDISLV-DRLMLRFAYGAF  626 (630)
Q Consensus       549 ~~~Vwdlsgk~l~tL~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg~~l~t~~H~~~V~sVa-s~~~~~lAsgs~  626 (630)
                        ++|++.........+|...|++++|+|+ ++|++++.|++|+|||+.+++++..+.|...|++++ ++++.+|++++.
T Consensus       249 --~i~d~~~~~~~~~~~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~s~  326 (337)
T d1gxra_         249 --EVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSG  326 (337)
T ss_dssp             --EEEETTSSCEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEET
T ss_pred             --ccccccccccccccccccccceEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEccCCCCEEEEEEeCCCCEEEEEeC
Confidence              7888865566678899999999999999 999999999999999999999999999999999999 899999998865


Q ss_pred             e
Q 006825          627 L  627 (630)
Q Consensus       627 ~  627 (630)
                      +
T Consensus       327 D  327 (337)
T d1gxra_         327 D  327 (337)
T ss_dssp             T
T ss_pred             C
Confidence            4

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=1.1e-31  Score=275.34  Aligned_cols=259  Identities=15%  Similarity=0.180  Sum_probs=215.9

Q ss_pred             CCCCcEEEEeeecCCCceeEEEEcCCCceEeeecceeeecCccceeEEEeec---ceEeecCCCccEecccCCCCcee--
Q 006825          298 LDNGKEFVVNEIQEDGTWKKVKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMK--  372 (630)
Q Consensus       298 LddG~~~~v~e~~~dg~~~~l~dv~TG~~lt~eef~~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~--  372 (630)
                      -.+|+.+++..    |....+|++.+++.+     ..+.||+..|.+++|+|   +||+|+.|++|+ +||+.++...  
T Consensus        26 ~~~g~~l~~~~----~~~v~i~~~~~~~~~-----~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~-iwd~~~~~~~~~   95 (311)
T d1nr0a1          26 TPAGDKIQYCN----GTSVYTVPVGSLTDT-----EIYTEHSHQTTVAKTSPSGYYCASGDVHGNVR-IWDTTQTTHILK   95 (311)
T ss_dssp             CTTSSEEEEEE----TTEEEEEETTCSSCC-----EEECCCSSCEEEEEECTTSSEEEEEETTSEEE-EEESSSTTCCEE
T ss_pred             cCCCCEEEEEe----CCEEEEEECCCCcee-----EEEcCCCCCEEEEEEeCCCCeEeccccCceEe-eeeeeccccccc
Confidence            34555555432    223568888887777     77899999999999999   899999999999 9999988754  


Q ss_pred             EEecCCccCCEEEEEEcCCCCeEEeecCCC---------C----CccccCCcceEEEeecCCCe---EEEecCCcEEEEE
Q 006825          373 SKKKGSWFKSIRTVASSVTGHKERRSSDER---------D----TSSEKGGRRSSSATDDSQDV---SFHGQERVRVRQY  436 (630)
Q Consensus       373 ~~lk~gH~~~V~sVAfSpdG~~lasgS~D~---------d----t~s~~gh~~~Vsa~~~s~d~---l~Sgs~Dg~VriW  436 (630)
                      ..+. +|...|.+|+|+|+|+++++++.++         +    ...+.+|...|.+++|++++   +++|+.|++|++|
T Consensus        96 ~~~~-~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~  174 (311)
T d1nr0a1          96 TTIP-VFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIF  174 (311)
T ss_dssp             EEEE-CSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEE
T ss_pred             cccc-cccCccccccccccccccccccccccccccccccccccccccccccccccccccccccceeeecccccccccccc
Confidence            4566 8999999999999999999988654         1    22378899999999998765   7889999999999


Q ss_pred             eCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeee--cccccCcccceEEEEECCC
Q 006825          437 GKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELL--EKQEDGHLNMLLLANGSPE  514 (630)
Q Consensus       437 d~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~--~~~~~gh~~~V~svafSpd  514 (630)
                      |..+.+     ....+.+|...|++++|+|++++|++++.|+.|++||+.++.....+.  .....+|...|.+++|+|+
T Consensus       175 d~~~~~-----~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~  249 (311)
T d1nr0a1         175 EGPPFK-----FKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPD  249 (311)
T ss_dssp             ETTTBE-----EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTT
T ss_pred             cccccc-----cccccccccccccccccCccccccccccccccccccccccccccccccccccccccccccccccccCCC
Confidence            997664     467889999999999999999999999999999999999888776653  1234578999999999999


Q ss_pred             CCEEEEeeCCCeeeeecccccccccccccCccccccEEEeC-CCCceEEeccCCC---CEEEEEEcCCCeEEEEECCCcE
Q 006825          515 PTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLD---DVLDLSWSKSQHLLSSSMDKTV  590 (630)
Q Consensus       515 g~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL~GHs~---~V~sLafSPd~~LaSgS~DgtV  590 (630)
                      +++|++++.|+.|                       ++|++ ++++++++..|..   .+.++.|++ .+|++++.||.|
T Consensus       250 ~~~l~tgs~Dg~v-----------------------~iwd~~t~~~~~~l~~~~~~~~~~~~~~~~~-~~l~s~s~dG~i  305 (311)
T d1nr0a1         250 GTKIASASADKTI-----------------------KIWNVATLKVEKTIPVGTRIEDQQLGIIWTK-QALVSISANGFI  305 (311)
T ss_dssp             SSEEEEEETTSEE-----------------------EEEETTTTEEEEEEECCSSGGGCEEEEEECS-SCEEEEETTCCE
T ss_pred             CCEEEEEeCCCeE-----------------------EEEECCCCcEEEEEECCCCccceEEEEEecC-CEEEEEECCCEE
Confidence            9999999999999                       88888 7888888887653   455666655 689999999999


Q ss_pred             EEEeCC
Q 006825          591 RLWHLS  596 (630)
Q Consensus       591 rIWDl~  596 (630)
                      ++||++
T Consensus       306 ~~wd~d  311 (311)
T d1nr0a1         306 NFVNPE  311 (311)
T ss_dssp             EEEETT
T ss_pred             EEEeCC
Confidence            999974

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=4.6e-32  Score=279.20  Aligned_cols=287  Identities=15%  Similarity=0.203  Sum_probs=215.2

Q ss_pred             ceeecCCCCcccCCCccccccCCCCCcccccccEEEEECCCCcEEEEeeecCCCceeEEEEcCCCceEeeecceeeecCc
Q 006825          260 SMSINGNGNYIGNSGEVVEDFDGNGTAGVAEQGCLIKNLDNGKEFVVNEIQEDGTWKKVKEVGTGRQLTIEEFEMCVGHS  339 (630)
Q Consensus       260 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~LddG~~~~v~e~~~dg~~~~l~dv~TG~~lt~eef~~l~GHs  339 (630)
                      +|++||||++|              +++. ++.++||++.+|+..........    ..++...   +   ......+|.
T Consensus        67 ~l~fs~dg~~l--------------asg~-d~~i~iW~~~~~~~~~~~~~~~~----~~~~~~~---~---~~~~~~~~~  121 (388)
T d1erja_          67 CVKFSNDGEYL--------------ATGC-NKTTQVYRVSDGSLVARLSDDSA----ANKDPEN---L---NTSSSPSSD  121 (388)
T ss_dssp             EEEECTTSSEE--------------EEEC-BSCEEEEETTTCCEEEEECC---------------------------CCC
T ss_pred             EEEECCCCCEE--------------EEEe-CCeEEEEEecccceEeeeccccc----ccccccc---c---ccccccCCC
Confidence            38999999999              3443 56899999999987665433221    0111111   1   113456899


Q ss_pred             cceeEEEeec---ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCC-----C------c
Q 006825          340 PIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERD-----T------S  405 (630)
Q Consensus       340 ~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~d-----t------~  405 (630)
                      ..|++|+|+|   .|++|+.|++++ +||..+++.+..+. +|...|.++++++++..+++++.++.     .      .
T Consensus       122 ~~V~~l~~s~~~~~l~s~~~dg~v~-i~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~  199 (388)
T d1erja_         122 LYIRSVCFSPDGKFLATGAEDRLIR-IWDIENRKIVMILQ-GHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSL  199 (388)
T ss_dssp             CBEEEEEECTTSSEEEEEETTSCEE-EEETTTTEEEEEEC-CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE
T ss_pred             CCEEEEEECCCCCcceecccccccc-cccccccccccccc-cccccccccccccccccccccccceeeeeeecccccccc
Confidence            9999999998   799999999999 99999999999998 99999999999999999999988761     1      1


Q ss_pred             cccCCcceEEEeecCCCe--EEEecCCcEEEEEeCCCCccccee--eeeEecccCcCEEEEEEccCCCEEEEEeCCCcEE
Q 006825          406 SEKGGRRSSSATDDSQDV--SFHGQERVRVRQYGKSCKDLTALY--KCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIH  481 (630)
Q Consensus       406 s~~gh~~~Vsa~~~s~d~--l~Sgs~Dg~VriWd~~~~el~~~~--~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIr  481 (630)
                      ....+...+....+..++  +++++.|+.|++|+...+......  ....+.+|.+.|++|+|+|++++|++|+.|++|+
T Consensus       200 ~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~  279 (388)
T d1erja_         200 TLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVK  279 (388)
T ss_dssp             EEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred             ccccccccccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEECCCcEE
Confidence            133344444444444444  899999999999999876532111  1234568999999999999999999999999999


Q ss_pred             EEECcCCceeeeee-------cccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEe
Q 006825          482 VWQVVESERKGELL-------EKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFA  554 (630)
Q Consensus       482 VWDl~tg~~~~~l~-------~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwd  554 (630)
                      +||+.++.......       ......|...|.+++|+|++++|++++.|+.|                       ++|+
T Consensus       280 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i-----------------------~vwd  336 (388)
T d1erja_         280 LWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGV-----------------------LFWD  336 (388)
T ss_dssp             EEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEE-----------------------EEEE
T ss_pred             EEeccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeCCCEE-----------------------EEEE
Confidence            99998765432211       11235788899999999999999999999999                       8888


Q ss_pred             C-CCCceEEeccCCCCEEEEEE------cCC-CeEEEEECCCcEEEEeCC
Q 006825          555 L-SDKPICSFQGHLDDVLDLSW------SKS-QHLLSSSMDKTVRLWHLS  596 (630)
Q Consensus       555 l-sgk~l~tL~GHs~~V~sLaf------SPd-~~LaSgS~DgtVrIWDl~  596 (630)
                      + +++++.+|.+|.+.|+++++      +|+ .+|+||+.||+|+||+++
T Consensus       337 ~~~~~~~~~l~~H~~~V~~~~~~~~~~~spd~~~l~s~s~Dg~I~iW~~~  386 (388)
T d1erja_         337 KKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK  386 (388)
T ss_dssp             TTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred             CCCCcEEEEEeCCCCCEEEEEEecCcccCCCCCEEEEEeCCCEEEEEeee
Confidence            8 78999999999999999986      567 799999999999999974

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.1e-31  Score=274.20  Aligned_cols=277  Identities=19%  Similarity=0.191  Sum_probs=219.4

Q ss_pred             eeeecCccceeEEEeec---ceEeecCCCccEecccCCCCceeEEec-----------------CCccCCEEEEEEcCCC
Q 006825          333 EMCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKKK-----------------GSWFKSIRTVASSVTG  392 (630)
Q Consensus       333 ~~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~lk-----------------~gH~~~V~sVAfSpdG  392 (630)
                      ....+|+..|++|+|+|   +||+|+ |++|+ +||+.+|+.+.++.                 .+|...|++|+|+|+|
T Consensus        56 ~~~~~H~~~V~~l~fs~dg~~lasg~-d~~i~-iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~  133 (388)
T d1erja_          56 HKSLDHTSVVCCVKFSNDGEYLATGC-NKTTQ-VYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDG  133 (388)
T ss_dssp             EEEEECSSCCCEEEECTTSSEEEEEC-BSCEE-EEETTTCCEEEEECC-----------------CCCCBEEEEEECTTS
T ss_pred             EeeCCCCCcEEEEEECCCCCEEEEEe-CCeEE-EEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCCC
Confidence            44558999999999998   788887 89999 99999999887765                 1467779999999999


Q ss_pred             CeEEeecCCCC-----------CccccCCcceEEEeecCCCe--EEEecCCcEEEEEeCCCCcccceeeeeEecccCcCE
Q 006825          393 HKERRSSDERD-----------TSSEKGGRRSSSATDDSQDV--SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSI  459 (630)
Q Consensus       393 ~~lasgS~D~d-----------t~s~~gh~~~Vsa~~~s~d~--l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V  459 (630)
                      ++|++++.|+.           .....+|...|.++.+.++.  ++.++.++.|++|+.....     .......|.. +
T Consensus       134 ~~l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~-----~~~~~~~~~~-~  207 (388)
T d1erja_         134 KFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQ-----CSLTLSIEDG-V  207 (388)
T ss_dssp             SEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE-----EEEEEECSSC-E
T ss_pred             Ccceecccccccccccccccccccccccccccccccccccccccccccccceeeeeeeccccc-----cccccccccc-c
Confidence            99999999871           12277899999999998886  8999999999999987653     2344454544 4


Q ss_pred             EEEEEc-cCCCEEEEEeCCCcEEEEECcCCceeeeee--cccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccc
Q 006825          460 WSIKFS-LDGRYLASAGEDCVIHVWQVVESERKGELL--EKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSI  536 (630)
Q Consensus       460 ~sVaFS-pDG~~LASgS~DgtIrVWDl~tg~~~~~l~--~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~  536 (630)
                      .++.|+ +++++|++|+.|+.|++|++.++.....+.  .....+|...|.+++|+|++.+|++++.|+.|++|+.....
T Consensus       208 ~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~  287 (388)
T d1erja_         208 TTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNAN  287 (388)
T ss_dssp             EEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC----
T ss_pred             ccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCCc
Confidence            455555 489999999999999999999988776653  22246788999999999999999999999999777654321


Q ss_pred             cccccccCccccccEEEeCCCCceEEeccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCCCcEEEEEe-cCCceEEEE
Q 006825          537 NRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYDISLV  614 (630)
Q Consensus       537 ~~~s~s~d~~i~~~~Vwdlsgk~l~tL~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg~~l~t~~-H~~~V~sVa  614 (630)
                      .....          .....+.....+..|...|++++|+|+ .+|++|+.||+|+|||+.+++++.++. |.+.|++++
T Consensus       288 ~~~~~----------~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l~~H~~~V~~~~  357 (388)
T d1erja_         288 NKSDS----------KTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVA  357 (388)
T ss_dssp             ---------------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEE
T ss_pred             ccccc----------ccccccceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEeCCCCCEEEEE
Confidence            11000          000123456677889999999999999 999999999999999999999999999 999999997


Q ss_pred             -------cCCCcEEEEecce
Q 006825          615 -------DRLMLRFAYGAFL  627 (630)
Q Consensus       615 -------s~~~~~lAsgs~~  627 (630)
                             +|++.++++++.+
T Consensus       358 ~~~~~~~spd~~~l~s~s~D  377 (388)
T d1erja_         358 VANGSSLGPEYNVFATGSGD  377 (388)
T ss_dssp             ECSSCTTCTTCEEEEEEETT
T ss_pred             EecCcccCCCCCEEEEEeCC
Confidence                   4678889988754

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=5.6e-31  Score=258.12  Aligned_cols=237  Identities=19%  Similarity=0.186  Sum_probs=210.3

Q ss_pred             EEEcCCCceEeeecceeeecCccceeEEEeec---ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCe
Q 006825          318 VKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHK  394 (630)
Q Consensus       318 l~dv~TG~~lt~eef~~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~  394 (630)
                      +|++.+|+.+     .++.+|...|.+++++|   .++++..+.++. +|+....+....+. +|...+.+++|+|++..
T Consensus        43 iWd~~~~~~~-----~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  115 (317)
T d1vyhc1          43 VWDYETGDFE-----RTLKGHTDSVQDISFDHSGKLLASCSADMTIK-LWDFQGFECIRTMH-GHDHNVSSVSIMPNGDH  115 (317)
T ss_dssp             EEETTTCCCC-----EEECCCSSCEEEEEECTTSSEEEEEETTSCCC-EEETTSSCEEECCC-CCSSCEEEEEECSSSSE
T ss_pred             EEECCCCCEE-----EEEeCCCCcEEEEeeecccccccccccccccc-cccccccccccccc-cccccceeeeccCCCce
Confidence            4444445555     66789999999999998   789999999999 99999988888887 99999999999999999


Q ss_pred             EEeecCCC-------CC----ccccCCcceEEEeecCCCe--EEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEE
Q 006825          395 ERRSSDER-------DT----SSEKGGRRSSSATDDSQDV--SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWS  461 (630)
Q Consensus       395 lasgS~D~-------dt----~s~~gh~~~Vsa~~~s~d~--l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~s  461 (630)
                      +++++.|+       .+    ..+.+|...+.++.+.+++  +++++.|+.|++|+....+     ....+.+|...|.+
T Consensus       116 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~-----~~~~~~~~~~~i~~  190 (317)
T d1vyhc1         116 IVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKE-----CKAELREHRHVVEC  190 (317)
T ss_dssp             EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC-----EEEEECCCSSCEEE
T ss_pred             EEeeccCcceeEeecccceeeeEEccCCCcceeeecccCCCEEEEEeCCCeEEEEeeccce-----eeEEEecCCCCceE
Confidence            99999887       11    2267888899999999887  8999999999999997764     46788999999999


Q ss_pred             EEEccCC--------------------CEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEe
Q 006825          462 IKFSLDG--------------------RYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPK  521 (630)
Q Consensus       462 VaFSpDG--------------------~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasg  521 (630)
                      ++|+|++                    .++++++.|++|++|++.+++.+..+     .+|...|.+++++|++.+|+++
T Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~l~s~  265 (317)
T d1vyhc1         191 ISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTL-----VGHDNWVRGVLFHSGGKFILSC  265 (317)
T ss_dssp             EEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEE-----ECCSSCEEEEEECSSSSCEEEE
T ss_pred             EEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCcEEEEE-----eCCCCCEEEEEECCCCCEEEEE
Confidence            9998764                    57999999999999999999988775     7899999999999999999999


Q ss_pred             eCCCeeeeecccccccccccccCccccccEEEeC-CCCceEEeccCCCCEEEEEEcCC-CeEEEEECCCcEEEEe
Q 006825          522 HLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWH  594 (630)
Q Consensus       522 s~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWD  594 (630)
                      +.|+.|                       ++|++ +++++.+|.+|...|++|+|+|+ ++|+||+.|++|+|||
T Consensus       266 ~~dg~i-----------------------~iwd~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         266 ADDKTL-----------------------RVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE  317 (317)
T ss_dssp             ETTTEE-----------------------EEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred             ECCCeE-----------------------EEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEeC
Confidence            999999                       88888 78999999999999999999999 9999999999999997

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=6.5e-30  Score=262.11  Aligned_cols=263  Identities=15%  Similarity=0.115  Sum_probs=216.3

Q ss_pred             ccEEEEECCCCcEEEEeeecCCCceeEEEEcCCCceEeeecceeeecCccceeEEEeec---ceEeecCCCccEecccCC
Q 006825          291 QGCLIKNLDNGKEFVVNEIQEDGTWKKVKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSS  367 (630)
Q Consensus       291 ~~~~I~~LddG~~~~v~e~~~dg~~~~l~dv~TG~~lt~eef~~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~  367 (630)
                      .++.|.--.+|+.++...   || ..++|++.+++...........+|...|.+|+|+|   .|++|+.|++++ +||+.
T Consensus        53 ~V~~v~fs~~g~~latg~---dg-~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~-iwd~~  127 (337)
T d1gxra_          53 VVCAVTISNPTRHVYTGG---KG-CVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLS-IWDLA  127 (337)
T ss_dssp             CCCEEEECSSSSEEEEEC---BS-EEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEE-EEECC
T ss_pred             cEEEEEECCCCCEEEEEE---CC-EEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEeecccccc-ccccc
Confidence            344455556666655432   45 36778877665553333345678999999999998   799999999999 99986


Q ss_pred             C--CceeEEecCCccCCEEEEEEcCCCCeEEeecCCCC-------C----ccccCCcceEEEeecCCCe--EEEecCCcE
Q 006825          368 G--GGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERD-------T----SSEKGGRRSSSATDDSQDV--SFHGQERVR  432 (630)
Q Consensus       368 t--G~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~d-------t----~s~~gh~~~Vsa~~~s~d~--l~Sgs~Dg~  432 (630)
                      .  ++....+. +|...|..++|+|++.++++++.+..       +    ....+|...|.++++++++  ++.++.|++
T Consensus       128 ~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~~~~~~~d~~  206 (337)
T d1gxra_         128 APTPRIKAELT-SSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNT  206 (337)
T ss_dssp             CC--EEEEEEE-CSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred             ccccccccccc-cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            4  45666777 89999999999999999999988861       1    2267788899999998886  899999999


Q ss_pred             EEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEEC
Q 006825          433 VRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGS  512 (630)
Q Consensus       433 VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafS  512 (630)
                      |++||+.+++     .++.+ .|...|.+++|+|++++|++|+.|+.|++||+.+++....      ..|...|..++|+
T Consensus       207 v~i~d~~~~~-----~~~~~-~~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~------~~~~~~i~~v~~s  274 (337)
T d1gxra_         207 VRSWDLREGR-----QLQQH-DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQL------HLHESCVLSLKFA  274 (337)
T ss_dssp             EEEEETTTTE-----EEEEE-ECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEE------CCCSSCEEEEEEC
T ss_pred             ccccccccce-----eeccc-ccccceEEEEEcccccccceeccccccccccccccccccc------cccccccceEEEC
Confidence            9999997764     23333 5899999999999999999999999999999998876543      6788999999999


Q ss_pred             CCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeC-CCCceEEeccCCCCEEEEEEcCC-CeEEEEECCCcE
Q 006825          513 PEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTV  590 (630)
Q Consensus       513 pdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL~GHs~~V~sLafSPd-~~LaSgS~DgtV  590 (630)
                      |++++|++++.|+.|                       ++|+. +++++..+ +|...|++++|+|+ ++|++|+.|++|
T Consensus       275 ~~g~~l~s~s~Dg~i-----------------------~iwd~~~~~~~~~~-~~~~~v~~~~~s~d~~~l~t~s~D~~I  330 (337)
T d1gxra_         275 YCGKWFVSTGKDNLL-----------------------NAWRTPYGASIFQS-KESSSVLSCDISVDDKYIVTGSGDKKA  330 (337)
T ss_dssp             TTSSEEEEEETTSEE-----------------------EEEETTTCCEEEEE-ECSSCEEEEEECTTSCEEEEEETTSCE
T ss_pred             CCCCEEEEEeCCCeE-----------------------EEEECCCCCEEEEc-cCCCCEEEEEEeCCCCEEEEEeCCCeE
Confidence            999999999999999                       78887 66777665 48899999999999 999999999999


Q ss_pred             EEEeC
Q 006825          591 RLWHL  595 (630)
Q Consensus       591 rIWDl  595 (630)
                      +|||+
T Consensus       331 ~vWdl  335 (337)
T d1gxra_         331 TVYEV  335 (337)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            99996

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.98  E-value=1.3e-30  Score=260.20  Aligned_cols=258  Identities=14%  Similarity=0.086  Sum_probs=205.1

Q ss_pred             eeeecCccceeEEEeec---ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCC----CC-
Q 006825          333 EMCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDER----DT-  404 (630)
Q Consensus       333 ~~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~----dt-  404 (630)
                      +++.||...|++|+|+|   +|+||+.|++|+ +||+.+|+.++.+..+|...|.+++|+|+|++++.+.++.    +. 
T Consensus         6 ~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~-vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~~~~~~~d~~v~~~~~~   84 (299)
T d1nr0a2           6 QVRYGHNKAITALSSSADGKTLFSADAEGHIN-SWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAG   84 (299)
T ss_dssp             EEECCCSSCEEEEEECTTSSEEEEEETTSCEE-EEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSS
T ss_pred             eEcCCCCCCcEEEEECCCCCEEEEEcCCCeEE-EEECCCCcEEEEEcCCCCCcEEEEEeeccceeecccceeeEEEeccC
Confidence            78899999999999999   799999999999 9999999999988778999999999999999887776554    11 


Q ss_pred             ----cc----ccCCcceEEEeecCCCe-EEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEe
Q 006825          405 ----SS----EKGGRRSSSATDDSQDV-SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAG  475 (630)
Q Consensus       405 ----~s----~~gh~~~Vsa~~~s~d~-l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS  475 (630)
                          ..    ...+...+.++.+++++ ++.+..++.+++|+...       .....  +...+.+++|+|++++|++|+
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~~-------~~~~~--~~~~~~~~~~s~~~~~l~~g~  155 (299)
T d1nr0a2          85 GSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGK-------LTEVP--ISYNSSCVALSNDKQFVAVGG  155 (299)
T ss_dssp             SSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTE-------EEEEE--CSSCEEEEEECTTSCEEEEEE
T ss_pred             Ccccccccccccccccccccccccccccccccccccccccccccc-------ccccc--ccccccccccccccccccccc
Confidence                11    23355667788888887 55566678999998532       12222  334588999999999999999


Q ss_pred             CCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeC
Q 006825          476 EDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL  555 (630)
Q Consensus       476 ~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl  555 (630)
                      .|+.|++||+.++......    ...|...|.+++|+|++.++++++.++.|                       ++|++
T Consensus       156 ~dg~i~~~d~~~~~~~~~~----~~~~~~~i~~~~~~~~~~~l~~~~~d~~i-----------------------~~~~~  208 (299)
T d1nr0a2         156 QDSKVHVYKLSGASVSEVK----TIVHPAEITSVAFSNNGAFLVATDQSRKV-----------------------IPYSV  208 (299)
T ss_dssp             TTSEEEEEEEETTEEEEEE----EEECSSCEEEEEECTTSSEEEEEETTSCE-----------------------EEEEG
T ss_pred             ccccccccccccccccccc----ccccccccccccccccccccccccccccc-----------------------ccccc
Confidence            9999999999877654432    35688899999999999999999999999                       56665


Q ss_pred             -CCC---ceEEeccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCCCcEEEEEe----cCCceEEEEcCCCcEEEEecc
Q 006825          556 -SDK---PICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS----HSDYDISLVDRLMLRFAYGAF  626 (630)
Q Consensus       556 -sgk---~l~tL~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg~~l~t~~----H~~~V~sVas~~~~~lAsgs~  626 (630)
                       ++.   .+..+.+|...|++++|+|+ .+|++|+.|++|+|||+.++.....+.    |...|.++..+.+..+++++.
T Consensus       209 ~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~s~  288 (299)
T d1nr0a2         209 ANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQ  288 (299)
T ss_dssp             GGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEEEETTEEEEEET
T ss_pred             cccccccccccccccccccccccccccccceEEEcCCCEEEEEECCCCCcceEEEecCCCCCcEEEEEECCCCEEEEEeC
Confidence             232   23456789999999999999 999999999999999999876543332    456778777555567777664


Q ss_pred             e
Q 006825          627 L  627 (630)
Q Consensus       627 ~  627 (630)
                      +
T Consensus       289 D  289 (299)
T d1nr0a2         289 D  289 (299)
T ss_dssp             T
T ss_pred             C
Confidence            4

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.97  E-value=1.8e-29  Score=258.76  Aligned_cols=241  Identities=11%  Similarity=0.105  Sum_probs=200.4

Q ss_pred             CccceeEEEeec---ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCC-------CC---
Q 006825          338 HSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDER-------DT---  404 (630)
Q Consensus       338 Hs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~-------dt---  404 (630)
                      +.+.+..|++.|   .|+.++ ++.+. +||+.+++..+.+. +|...|.+++|+|+|++|++|+.|+       ..   
T Consensus        16 ~r~~~~~~a~~~~g~~l~~~~-~~~v~-i~~~~~~~~~~~~~-~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~   92 (311)
T d1nr0a1          16 ARGTAVVLGNTPAGDKIQYCN-GTSVY-TVPVGSLTDTEIYT-EHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTH   92 (311)
T ss_dssp             CTTCCCCCEECTTSSEEEEEE-TTEEE-EEETTCSSCCEEEC-CCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTC
T ss_pred             CCCCeEEEEEcCCCCEEEEEe-CCEEE-EEECCCCceeEEEc-CCCCCEEEEEEeCCCCeEeccccCceEeeeeeecccc
Confidence            445566778888   566654 56688 99999999999998 9999999999999999999999987       11   


Q ss_pred             ---ccccCCcceEEEeecCCCe--EEEecC--CcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCE-EEEEeC
Q 006825          405 ---SSEKGGRRSSSATDDSQDV--SFHGQE--RVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRY-LASAGE  476 (630)
Q Consensus       405 ---~s~~gh~~~Vsa~~~s~d~--l~Sgs~--Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~-LASgS~  476 (630)
                         ..+.+|...|.++.|++++  +++++.  +..+++|+..+++     ..+++.+|...|++|+|+|++++ |++|+.
T Consensus        93 ~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~-----~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~  167 (311)
T d1nr0a1          93 ILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGT-----SNGNLTGQARAMNSVDFKPSRPFRIISGSD  167 (311)
T ss_dssp             CEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCC-----BCBCCCCCSSCEEEEEECSSSSCEEEEEET
T ss_pred             ccccccccccCcccccccccccccccccccccccccccccccccc-----ccccccccccccccccccccceeeeccccc
Confidence               1267899999999999987  666654  5668999987765     35678999999999999999884 899999


Q ss_pred             CCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeC-
Q 006825          477 DCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-  555 (630)
Q Consensus       477 DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-  555 (630)
                      |++|++||+.+++....+     .+|...|.++.++|++.++++++.|+.|                       .+|+. 
T Consensus       168 d~~i~i~d~~~~~~~~~~-----~~~~~~i~~v~~~p~~~~l~~~~~d~~v-----------------------~~~d~~  219 (311)
T d1nr0a1         168 DNTVAIFEGPPFKFKSTF-----GEHTKFVHSVRYNPDGSLFASTGGDGTI-----------------------VLYNGV  219 (311)
T ss_dssp             TSCEEEEETTTBEEEEEE-----CCCSSCEEEEEECTTSSEEEEEETTSCE-----------------------EEEETT
T ss_pred             cccccccccccccccccc-----ccccccccccccCccccccccccccccc-----------------------cccccc
Confidence            999999999998877663     7899999999999999999999999999                       45554 


Q ss_pred             CCCceEE-------eccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCCCcEEEEEe-cC---CceEEEE
Q 006825          556 SDKPICS-------FQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-HS---DYDISLV  614 (630)
Q Consensus       556 sgk~l~t-------L~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg~~l~t~~-H~---~~V~sVa  614 (630)
                      .+..+..       +.+|...|++++|+|+ ++|++|+.|++|+|||+.++++++++. |.   ..+.++.
T Consensus       220 ~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~~~~~l~~~~~~~~~~~~~~  290 (311)
T d1nr0a1         220 DGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGII  290 (311)
T ss_dssp             TCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEE
T ss_pred             cccccccccccccccccccccccccccCCCCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCccceEEEEE
Confidence            3333333       3579999999999999 999999999999999999999999997 43   3445555

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.97  E-value=1.2e-29  Score=264.37  Aligned_cols=258  Identities=15%  Similarity=0.050  Sum_probs=192.9

Q ss_pred             eeeecCccceeEEEeec---ceEeecCCCccEecccCCCCceeEEec-CCccCCEEEEEEcCCCCeEEeecCCCC-----
Q 006825          333 EMCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKKK-GSWFKSIRTVASSVTGHKERRSSDERD-----  403 (630)
Q Consensus       333 ~~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~lk-~gH~~~V~sVAfSpdG~~lasgS~D~d-----  403 (630)
                      ..|.||...|.+|+|+|   +|++|+.|++++ +||+.++.....+. .+|...|.+++|+|+|+++++++.++.     
T Consensus        45 ~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~-vWd~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~  123 (371)
T d1k8kc_          45 HELKEHNGQVTGVDWAPDSNRIVTCGTDRNAY-VWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICY  123 (371)
T ss_dssp             EEEECCSSCEEEEEEETTTTEEEEEETTSCEE-EEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEE
T ss_pred             EEecCCCCCEEEEEECCCCCEEEEEECCCeEE-EEeecccccccccccccccccccccccccccccceeecccCcceeee
Confidence            56789999999999998   799999999999 99998877554432 289999999999999999999998871     


Q ss_pred             --C--------ccccCCcceEEEeecCCCe--EEEecCCcEEEEEeCCCCcccc-------------eeeeeEecccCcC
Q 006825          404 --T--------SSEKGGRRSSSATDDSQDV--SFHGQERVRVRQYGKSCKDLTA-------------LYKCQEIQAHNGS  458 (630)
Q Consensus       404 --t--------~s~~gh~~~Vsa~~~s~d~--l~Sgs~Dg~VriWd~~~~el~~-------------~~~v~tL~gHt~~  458 (630)
                        .        ....+|...|.++++++++  +++|+.|++|++|+........             ...+.++.+|...
T Consensus       124 ~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (371)
T d1k8kc_         124 FEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGW  203 (371)
T ss_dssp             EETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSC
T ss_pred             eecccccccccccccccccccccccccccccceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCc
Confidence              1        1156788899999999987  8999999999999976543211             1245667899999


Q ss_pred             EEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeeccccc--c
Q 006825          459 IWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRS--I  536 (630)
Q Consensus       459 V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~--~  536 (630)
                      |.+++|+|+|++|++++.|++|++||+.++..+..+     ..|..+|.+++|+|++.++++|. |+.+.+|.....  .
T Consensus       204 v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~-----~~~~~~v~s~~fs~d~~~la~g~-d~~~~~~~~~~~~~~  277 (371)
T d1k8kc_         204 VHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATL-----ASETLPLLAVTFITESSLVAAGH-DCFPVLFTYDSAAGK  277 (371)
T ss_dssp             EEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEE-----ECSSCCEEEEEEEETTEEEEEET-TSSCEEEEEETTTTE
T ss_pred             EEEEEeecccccccccccCCcceEEeeecccceeee-----ecccccceeeeecCCCCEEEEEc-CCceEEEEeeCCCce
Confidence            999999999999999999999999999999888775     67888999999999999888765 665555443221  1


Q ss_pred             cccccccC--cccccc--------EEEeCC------CC-ceEEeccCCCCEEEEEEcCC-----CeEEEEECCCcEEEEe
Q 006825          537 NRKSLSLD--HMVVPE--------TVFALS------DK-PICSFQGHLDDVLDLSWSKS-----QHLLSSSMDKTVRLWH  594 (630)
Q Consensus       537 ~~~s~s~d--~~i~~~--------~Vwdls------gk-~l~tL~GHs~~V~sLafSPd-----~~LaSgS~DgtVrIWD  594 (630)
                      .......+  ......        ..++..      .. .......|.+.|+++++.+.     ..|+|++.||+|+|||
T Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~I~~i~~~~~~~~~~~~~~T~g~Dg~v~iW~  357 (371)
T d1k8kc_         278 LSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWD  357 (371)
T ss_dssp             EEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEE
T ss_pred             EEEeeeecCccccccccccceeeEecccceeEEeccccccceecccccCCEEEEEEeCCCCcceEEEEEEcCCCeEEEEe
Confidence            10000000  000000        000100      00 11112359999999999764     3689999999999999


Q ss_pred             CCC
Q 006825          595 LSS  597 (630)
Q Consensus       595 l~t  597 (630)
                      +++
T Consensus       358 ~~~  360 (371)
T d1k8kc_         358 VRS  360 (371)
T ss_dssp             HHH
T ss_pred             CCc
Confidence            864

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.97  E-value=9e-30  Score=265.31  Aligned_cols=245  Identities=10%  Similarity=-0.042  Sum_probs=202.5

Q ss_pred             cceeEEEeec---ceEeecCCCccEecccCCCCc--eeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceE
Q 006825          340 PIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGG--MKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSS  414 (630)
Q Consensus       340 ~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~--~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~V  414 (630)
                      .+|++++|+|   .||+|+.|++|+ +||.++++  ++..++ +|.+.|++|+|+|+|++|++                 
T Consensus         8 ~pIt~~~~s~dg~~la~~~~~~~i~-iw~~~~~~~~~~~~l~-gH~~~V~~l~fsp~~~~l~s-----------------   68 (371)
T d1k8kc_           8 EPISCHAWNKDRTQIAICPNNHEVH-IYEKSGNKWVQVHELK-EHNGQVTGVDWAPDSNRIVT-----------------   68 (371)
T ss_dssp             SCCCEEEECTTSSEEEEECSSSEEE-EEEEETTEEEEEEEEE-CCSSCEEEEEEETTTTEEEE-----------------
T ss_pred             CCeEEEEECCCCCEEEEEeCCCEEE-EEECCCCCEEEEEEec-CCCCCEEEEEECCCCCEEEE-----------------
Confidence            5699999999   799999999999 99998886  567778 99999999999999988854                 


Q ss_pred             EEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeee
Q 006825          415 SATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGEL  494 (630)
Q Consensus       415 sa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l  494 (630)
                                  ++.|++|++|++..++.   .....+.+|...|++++|+|++++|++|+.|++|++|++........+
T Consensus        69 ------------~s~D~~i~vWd~~~~~~---~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~  133 (371)
T d1k8kc_          69 ------------CGTDRNAYVWTLKGRTW---KPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVC  133 (371)
T ss_dssp             ------------EETTSCEEEEEEETTEE---EEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEE
T ss_pred             ------------EECCCeEEEEeeccccc---ccccccccccccccccccccccccceeecccCcceeeeeecccccccc
Confidence                        45677899999876543   245567899999999999999999999999999999999776543332


Q ss_pred             ecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEe---CCCCceEEeccCCCCEE
Q 006825          495 LEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFA---LSDKPICSFQGHLDDVL  571 (630)
Q Consensus       495 ~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwd---lsgk~l~tL~GHs~~V~  571 (630)
                      . ....+|...|.+++|+|++++|++++.|+.+++|+............       ..|.   ..++.+..+.+|...|+
T Consensus       134 ~-~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~v~  205 (371)
T d1k8kc_         134 K-HIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAP-------TPWGSKMPFGELMFESSSSCGWVH  205 (371)
T ss_dssp             E-EECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCC-------BTTBSCCCTTCEEEECCCCSSCEE
T ss_pred             c-ccccccccccccccccccccceeccccCcEEEEEeeccCcccccccc-------ccccccccceeeeeeccCccCcEE
Confidence            1 22467889999999999999999999999999888654221111100       1111   14567788899999999


Q ss_pred             EEEEcCC-CeEEEEECCCcEEEEeCCCCcEEEEEe-cCCceEEEE-cCCCcEEEEecc
Q 006825          572 DLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYDISLV-DRLMLRFAYGAF  626 (630)
Q Consensus       572 sLafSPd-~~LaSgS~DgtVrIWDl~tg~~l~t~~-H~~~V~sVa-s~~~~~lAsgs~  626 (630)
                      +++|+|+ ++|++++.|++|++||+.+++++..+. |..+|++|+ .+++..+++|..
T Consensus       206 ~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~s~~fs~d~~~la~g~d  263 (371)
T d1k8kc_         206 GVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAGHD  263 (371)
T ss_dssp             EEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEETT
T ss_pred             EEEeecccccccccccCCcceEEeeecccceeeeecccccceeeeecCCCCEEEEEcC
Confidence            9999999 999999999999999999999999998 999999999 888888888753

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=2e-28  Score=242.92  Aligned_cols=253  Identities=18%  Similarity=0.219  Sum_probs=199.5

Q ss_pred             eeeecCcccee-EEEeec-ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCC------
Q 006825          333 EMCVGHSPIVQ-ELMRRQ-NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDT------  404 (630)
Q Consensus       333 ~~l~GHs~~V~-~Lafs~-~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt------  404 (630)
                      ..|.||...|. ++.|.. +|||||.|++|+ +||+.+|+++++++ +|...|.+++|+++  ++++++.|+..      
T Consensus        10 ~~l~GH~~~V~s~~~~~g~~l~sgs~Dg~i~-vWd~~~~~~~~~~~-~h~~~V~~v~~~~~--~l~s~s~D~~~~~~~~~   85 (342)
T d2ovrb2          10 KVLKGHDDHVITCLQFCGNRIVSGSDDNTLK-VWSAVTGKCLRTLV-GHTGGVWSSQMRDN--IIISGSTDRTLKVWNAE   85 (342)
T ss_dssp             EEEECSTTSCEEEEEEETTEEEEEETTSCEE-EEETTTCCEEEECC-CCSSCEEEEEEETT--EEEEEETTSCEEEEETT
T ss_pred             EEECCcCCceEEEEEECCCEEEEEeCCCeEE-EEECCCCCEEEEEe-CCCCCEEEEEeCCC--ccccceecccccccccc
Confidence            67899998874 566665 799999999999 99999999999999 99999999999974  89999888710      


Q ss_pred             -----ccccCCcceE----------------------------------------EEeecCCCeEEEecCCcEEEEEeCC
Q 006825          405 -----SSEKGGRRSS----------------------------------------SATDDSQDVSFHGQERVRVRQYGKS  439 (630)
Q Consensus       405 -----~s~~gh~~~V----------------------------------------sa~~~s~d~l~Sgs~Dg~VriWd~~  439 (630)
                           .....+...+                                        .........++.++.++.|++|+..
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~d~~  165 (342)
T d2ovrb2          86 TGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPE  165 (342)
T ss_dssp             TTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSCEEEEEGG
T ss_pred             cccceecccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeeccccceeeeecCCCeEEEeecc
Confidence                 0011111111                                        1112222235677778888888775


Q ss_pred             CCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEE
Q 006825          440 CKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLS  519 (630)
Q Consensus       440 ~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~la  519 (630)
                      ...     .+..+.+|...+..+.+  ++.+|++|+.|++|++||+..++.+..+     .+|...+.++.+++  .+++
T Consensus       166 ~~~-----~~~~~~~~~~~~~~~~~--~~~~l~s~~~dg~i~~~d~~~~~~~~~~-----~~~~~~v~~~~~~~--~~l~  231 (342)
T d2ovrb2         166 TET-----CLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTL-----TGHQSLTSGMELKD--NILV  231 (342)
T ss_dssp             GTE-----EEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEE-----CCCCSCEEEEEEET--TEEE
T ss_pred             cce-----eeEEEcCcccccccccC--CCCEEEEEeCCCeEEEeecccceeeeEe-----cccccceeEEecCC--CEEE
Confidence            443     46778899888877666  7899999999999999999999887774     78888888887764  6999


Q ss_pred             EeeCCCeeeeecccccccccccccCccccccEEEeC-CCCceEEecc---CCCCEEEEEEcCCCeEEEEECCCcEEEEeC
Q 006825          520 PKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQG---HLDDVLDLSWSKSQHLLSSSMDKTVRLWHL  595 (630)
Q Consensus       520 sgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL~G---Hs~~V~sLafSPd~~LaSgS~DgtVrIWDl  595 (630)
                      +++.|+.|                       ++|++ ..+....+.+   |...+.+++|++ .+|++|+.||+|+|||+
T Consensus       232 s~s~d~~i-----------------------~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~s~Dg~i~iwd~  287 (342)
T d2ovrb2         232 SGNADSTV-----------------------KIWDIKTGQCLQTLQGPNKHQSAVTCLQFNK-NFVITSSDDGTVKLWDL  287 (342)
T ss_dssp             EEETTSCE-----------------------EEEETTTCCEEEEECSTTSCSSCEEEEEECS-SEEEEEETTSEEEEEET
T ss_pred             EEcCCCEE-----------------------EEEecccccccccccccceeeeceeecccCC-CeeEEEcCCCEEEEEEC
Confidence            99999999                       77777 4556666654   667788888876 69999999999999999


Q ss_pred             CCCcEEEEEe------cCCceEEEE-cCCCcEEEEecce
Q 006825          596 SSKTCLKIFS------HSDYDISLV-DRLMLRFAYGAFL  627 (630)
Q Consensus       596 ~tg~~l~t~~------H~~~V~sVa-s~~~~~lAsgs~~  627 (630)
                      .++++++++.      |...|++|+ ++++..+|+|+..
T Consensus       288 ~tg~~i~~~~~~~~~~~~~~v~~v~~s~~~~~la~g~~d  326 (342)
T d2ovrb2         288 KTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRN  326 (342)
T ss_dssp             TTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSS
T ss_pred             CCCCEEEEEecccCCCCCCCEEEEEECCCCCEEEEEeCC
Confidence            9999998874      778899999 8899999998654

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.97  E-value=7.6e-29  Score=247.17  Aligned_cols=263  Identities=17%  Similarity=0.220  Sum_probs=197.7

Q ss_pred             eeecCCCCcccCCCccccccCCCCCcccccccEEEEECCCCcEEEEeeecCCCceeEEEEcCCCceEeeecceee-ecCc
Q 006825          261 MSINGNGNYIGNSGEVVEDFDGNGTAGVAEQGCLIKNLDNGKEFVVNEIQEDGTWKKVKEVGTGRQLTIEEFEMC-VGHS  339 (630)
Q Consensus       261 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~LddG~~~~v~e~~~dg~~~~l~dv~TG~~lt~eef~~l-~GHs  339 (630)
                      +++||||++|              +++..|+.++||++++                       |+++     ..+ .+|.
T Consensus        18 l~~s~dg~~l--------------~s~s~Dg~v~vWd~~~-----------------------~~~~-----~~~~~~h~   55 (299)
T d1nr0a2          18 LSSSADGKTL--------------FSADAEGHINSWDIST-----------------------GISN-----RVFPDVHA   55 (299)
T ss_dssp             EEECTTSSEE--------------EEEETTSCEEEEETTT-----------------------CCEE-----ECSSCSCS
T ss_pred             EEECCCCCEE--------------EEEcCCCeEEEEECCC-----------------------CcEE-----EEEcCCCC
Confidence            6788888888              4444555666666544                       4444     333 4689


Q ss_pred             cceeEEEeec--ceEeecCCCccEecccCCCCce---eEEecCCccCCEEEEEEcCCCCeEEeecCCC----CCc--ccc
Q 006825          340 PIVQELMRRQ--NVEEGNKDSFDLNNNGSSGGGM---KSKKKGSWFKSIRTVASSVTGHKERRSSDER----DTS--SEK  408 (630)
Q Consensus       340 ~~V~~Lafs~--~laSgS~D~tvr~vWD~~tG~~---~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~----dt~--s~~  408 (630)
                      ..|++++|+|  .+++++.|++++ +|+......   ..... .|...+.+++|+++|++++.++.+.    +..  ...
T Consensus        56 ~~v~~v~~~~~g~~~~~~~d~~v~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~~~~~~  133 (299)
T d1nr0a2          56 TMITGIKTTSKGDLFTVSWDDHLK-VVPAGGSGVDSSKAVAN-KLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEV  133 (299)
T ss_dssp             SCEEEEEECTTSCEEEEETTTEEE-EECSSSSSSCTTSCCEE-ECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEE
T ss_pred             CcEEEEEeeccceeecccceeeEE-EeccCCccccccccccc-ccccccccccccccccccccccccccccccccccccc
Confidence            9999999999  688889999999 999765432   22222 6788999999999999988877654    111  111


Q ss_pred             CCcceEEEeecCCCe--EEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECc
Q 006825          409 GGRRSSSATDDSQDV--SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVV  486 (630)
Q Consensus       409 gh~~~Vsa~~~s~d~--l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~  486 (630)
                      .....+.++++++++  +++|+.|+.|++||+.+++..    ......|...|++++|+|++++|++++.|+.|++||+.
T Consensus       134 ~~~~~~~~~~~s~~~~~l~~g~~dg~i~~~d~~~~~~~----~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~  209 (299)
T d1nr0a2         134 PISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVS----EVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVA  209 (299)
T ss_dssp             ECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEE----EEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGG
T ss_pred             cccccccccccccccccccccccccccccccccccccc----cccccccccccccccccccccccccccccccccccccc
Confidence            223345666777765  889999999999998766432    12345799999999999999999999999999999998


Q ss_pred             CCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeC-CC--CceEEe
Q 006825          487 ESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SD--KPICSF  563 (630)
Q Consensus       487 tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sg--k~l~tL  563 (630)
                      ++.....+  ..+.+|...|.+++|+|++.+|++++.|+.|                       ++|++ ++  ..+...
T Consensus       210 ~~~~~~~~--~~~~~h~~~v~~l~~s~~~~~l~sgs~dg~i-----------------------~iwd~~~~~~~~~~~~  264 (299)
T d1nr0a2         210 NNFELAHT--NSWTFHTAKVACVSWSPDNVRLATGSLDNSV-----------------------IVWNMNKPSDHPIIIK  264 (299)
T ss_dssp             GTTEESCC--CCCCCCSSCEEEEEECTTSSEEEEEETTSCE-----------------------EEEETTCTTSCCEEET
T ss_pred             cccccccc--ccccccccccccccccccccceEEEcCCCEE-----------------------EEEECCCCCcceEEEe
Confidence            87665443  2247889999999999999999999999999                       67776 22  233333


Q ss_pred             ccC-CCCEEEEEEcCCCeEEEEECCCcEEEEeCC
Q 006825          564 QGH-LDDVLDLSWSKSQHLLSSSMDKTVRLWHLS  596 (630)
Q Consensus       564 ~GH-s~~V~sLafSPd~~LaSgS~DgtVrIWDl~  596 (630)
                      .+| ...|.++.|.++++|+|++.|++|||||+.
T Consensus       265 ~~~~~~~v~~~~~~~~~~l~s~s~D~~i~iWdl~  298 (299)
T d1nr0a2         265 GAHAMSSVNSVIWLNETTIVSAGQDSNIKFWNVP  298 (299)
T ss_dssp             TSSTTSCEEEEEEEETTEEEEEETTSCEEEEECC
T ss_pred             cCCCCCcEEEEEECCCCEEEEEeCCCEEEEEecc
Confidence            444 456777777666999999999999999985

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=1.8e-28  Score=257.38  Aligned_cols=269  Identities=13%  Similarity=0.016  Sum_probs=185.5

Q ss_pred             eeeecCccceeEEEeec-ceEeecCCCccEecccCCCCce------eEEecCCccCCEEE------EEEcC-CCCeEEee
Q 006825          333 EMCVGHSPIVQELMRRQ-NVEEGNKDSFDLNNNGSSGGGM------KSKKKGSWFKSIRT------VASSV-TGHKERRS  398 (630)
Q Consensus       333 ~~l~GHs~~V~~Lafs~-~laSgS~D~tvr~vWD~~tG~~------~~~lk~gH~~~V~s------VAfSp-dG~~lasg  398 (630)
                      ....||...|.+|++.+ +++|+|.|+++| +||..++..      ..... .|...+..      +.... ++.+++++
T Consensus         8 ~~~~~H~~~I~~v~~~~~~l~S~S~D~~ir-iWd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~s~   85 (393)
T d1sq9a_           8 NAGKAHDADIFSVSACNSFTVSCSGDGYLK-VWDNKLLDNENPKDKSYSHF-VHKSGLHHVDVLQAIERDAFELCLVATT   85 (393)
T ss_dssp             EESSCSSSCEEEEEECSSEEEEEETTSEEE-EEESBCCTTCCGGGGEEEEE-CCTTCEEEEEEEEEEETTTEEEEEEEEE
T ss_pred             ecCCcccCccEEEEEeCCEEEEEECCCeEE-EEECCCCCCCcccceeEeee-eccCCceEeeeEeeeccCCCCCcEEEEE
Confidence            45679999999999988 899999999999 999876542      11222 34433322      22111 23356666


Q ss_pred             cCCCCC-----------c----------cccCCcceEEEeecCC-------CeEEEecCCcEEEEEeCCCCcc-------
Q 006825          399 SDERDT-----------S----------SEKGGRRSSSATDDSQ-------DVSFHGQERVRVRQYGKSCKDL-------  443 (630)
Q Consensus       399 S~D~dt-----------~----------s~~gh~~~Vsa~~~s~-------d~l~Sgs~Dg~VriWd~~~~el-------  443 (630)
                      +.|+..           .          ....+...+..+.+..       ..+++++.|++|++|++.....       
T Consensus        86 ~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~  165 (393)
T d1sq9a_          86 SFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTL  165 (393)
T ss_dssp             ETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTT
T ss_pred             eCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeee
Confidence            655410           0          0111222233333222       2278899999999999743210       


Q ss_pred             --c----ceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeee-cccccCcccceEEEEECCCCC
Q 006825          444 --T----ALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELL-EKQEDGHLNMLLLANGSPEPT  516 (630)
Q Consensus       444 --~----~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~-~~~~~gh~~~V~svafSpdg~  516 (630)
                        .    ..........|...+.+++|+|++ +||||+.|++|+|||+.+++.+..+. ...+.+|...|.+++|+|+++
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~  244 (393)
T d1sq9a_         166 NWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGS  244 (393)
T ss_dssp             CCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTT
T ss_pred             eeccceecccceecccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeecccccccccccccccccccceEEEcccccccc
Confidence              0    001122334566779999999998 89999999999999999998776654 234578999999999999999


Q ss_pred             EEEEeeCCCeeeeecccccccccccccCccccccEEEeC-CCCceEE-------------eccCCCCEEEEEEcCC-CeE
Q 006825          517 SLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICS-------------FQGHLDDVLDLSWSKS-QHL  581 (630)
Q Consensus       517 ~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~t-------------L~GHs~~V~sLafSPd-~~L  581 (630)
                      +|++++.|+++..+                    ++|++ +++++.+             +.||...|++|+|+|+ .+|
T Consensus       245 ~l~sgs~D~t~~~i--------------------~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l  304 (393)
T d1sq9a_         245 LLAIAHDSNSFGCI--------------------TLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETL  304 (393)
T ss_dssp             EEEEEEEETTEEEE--------------------EEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEE
T ss_pred             eeeeecCCCCccee--------------------eecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCee
Confidence            99999998752111                    45555 4444444             4589999999999999 999


Q ss_pred             EEEECCCcEEEEeCCCCcEEEEEe-cCCceEE----EE-cCCCcEEEEe
Q 006825          582 LSSSMDKTVRLWHLSSKTCLKIFS-HSDYDIS----LV-DRLMLRFAYG  624 (630)
Q Consensus       582 aSgS~DgtVrIWDl~tg~~l~t~~-H~~~V~s----Va-s~~~~~lAsg  624 (630)
                      +|||.|++|||||+.+|++++++. |.+.|..    ++ .+.+..++++
T Consensus       305 ~S~s~D~~v~vWd~~~g~~~~~l~gH~~~v~~~~~~~~~~~~~~~~~~~  353 (393)
T d1sq9a_         305 CSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEP  353 (393)
T ss_dssp             EEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSC
T ss_pred             EEECCCCEEEEEECCCCCEEEEECCcCCcccCCccEEEECCCCCEEEEc
Confidence            999999999999999999999998 9877753    33 4455444443

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=4.4e-28  Score=248.58  Aligned_cols=231  Identities=14%  Similarity=0.140  Sum_probs=184.1

Q ss_pred             eeeecC-ccceeEEEeec-----ceEeecCCCccEecccCCCCceeEE--------ecCCccCCEEEEEEcCCCCeEEee
Q 006825          333 EMCVGH-SPIVQELMRRQ-----NVEEGNKDSFDLNNNGSSGGGMKSK--------KKGSWFKSIRTVASSVTGHKERRS  398 (630)
Q Consensus       333 ~~l~GH-s~~V~~Lafs~-----~laSgS~D~tvr~vWD~~tG~~~~~--------lk~gH~~~V~sVAfSpdG~~lasg  398 (630)
                      ..+.|| +..|++++|+|     +||+|+.|++|+ +||+..++....        +. .|...|.+++|+++|++++++
T Consensus        56 ~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~-iWd~~~~~~~~~~~~~~~~~~~-~~~~~v~~v~~s~~~~~l~~~  133 (325)
T d1pgua1          56 VQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVI-VWGWTFDKESNSVEVNVKSEFQ-VLAGPISDISWDFEGRRLCVV  133 (325)
T ss_dssp             EEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEE-EEEEEEEGGGTEEEEEEEEEEE-CCSSCEEEEEECTTSSEEEEE
T ss_pred             EEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEE-EeeecCCcceeeeecccccccc-cccCcEEEEEECCCCCcccee
Confidence            567787 57899999997     699999999999 999977654322        33 688999999999999998887


Q ss_pred             cCCC---------CC----ccccCCcceEEEeecCCCe---EEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEE
Q 006825          399 SDER---------DT----SSEKGGRRSSSATDDSQDV---SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSI  462 (630)
Q Consensus       399 S~D~---------dt----~s~~gh~~~Vsa~~~s~d~---l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sV  462 (630)
                      +.+.         ++    ..+.+|...|.++.+.++.   +++++.|+.|++|+....+..  .....+.+|...|+++
T Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~--~~~~~~~~~~~~v~~v  211 (325)
T d1pgua1         134 GEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFS--ASDRTHHKQGSFVRDV  211 (325)
T ss_dssp             ECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEE--EEECSSSCTTCCEEEE
T ss_pred             eccccceEEEEeecccccceeeeecccccccccccccccceEEEeecccccccccccccccc--eecccccCCCCccEEe
Confidence            6543         22    2267899999999998775   778999999999998765432  2334567889999999


Q ss_pred             EEccC-CCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEEC---CCCCEEEEeeCCCeeeeecccccccc
Q 006825          463 KFSLD-GRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGS---PEPTSLSPKHLDNHLEKKRRGRSINR  538 (630)
Q Consensus       463 aFSpD-G~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafS---pdg~~lasgs~Dg~I~i~~~~~~~~~  538 (630)
                      +|+|+ +.+|++++.|++|++||+.+++.+..+     .+|...+..+.|+   |++++|++++.|+.|           
T Consensus       212 ~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l-----~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i-----------  275 (325)
T d1pgua1         212 EFSPDSGEFVITVGSDRKISCFDGKSGEFLKYI-----EDDQEPVQGGIFALSWLDSQKFATVGADATI-----------  275 (325)
T ss_dssp             EECSTTCCEEEEEETTCCEEEEETTTCCEEEEC-----CBTTBCCCSCEEEEEESSSSEEEEEETTSEE-----------
T ss_pred             eeccccceeccccccccceeeeeeccccccccc-----cccccccccceeeeeccCCCEEEEEeCCCeE-----------
Confidence            99996 689999999999999999999988775     5565555433333   689999999999999           


Q ss_pred             cccccCccccccEEEeC-CCCceEEeccCCCC--EE--EEEEcCCCeEEEEECCCcEEEEeC
Q 006825          539 KSLSLDHMVVPETVFAL-SDKPICSFQGHLDD--VL--DLSWSKSQHLLSSSMDKTVRLWHL  595 (630)
Q Consensus       539 ~s~s~d~~i~~~~Vwdl-sgk~l~tL~GHs~~--V~--sLafSPd~~LaSgS~DgtVrIWDl  595 (630)
                                  +||++ +++++.++..|...  +.  ++.|.++.+|+++|.||+|+|||+
T Consensus       276 ------------~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~vwdl  325 (325)
T d1pgua1         276 ------------RVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYEL  325 (325)
T ss_dssp             ------------EEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEET
T ss_pred             ------------EEEECCCCCEEEEEEecCCcccCeEEEEEECCCCEEEEEECCCEEEEEEC
Confidence                        88888 67888888776654  33  444455579999999999999996

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=1.3e-27  Score=238.43  Aligned_cols=271  Identities=15%  Similarity=0.113  Sum_probs=213.2

Q ss_pred             CCCceeEEEEcCCCceEeeecceeeecCccceeEEEeec--ceEeecCCCccEecccCCCCceeEEecC-CccCCEEEEE
Q 006825          311 EDGTWKKVKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQ--NVEEGNKDSFDLNNNGSSGGGMKSKKKG-SWFKSIRTVA  387 (630)
Q Consensus       311 ~dg~~~~l~dv~TG~~lt~eef~~l~GHs~~V~~Lafs~--~laSgS~D~tvr~vWD~~tG~~~~~lk~-gH~~~V~sVA  387 (630)
                      .||. .++||+.+|+++     .++.||...|++|+|+|  .|++|+.|++++ +|+...++....... .+...+..++
T Consensus        31 ~Dg~-i~vWd~~~~~~~-----~~l~~H~~~V~~l~~s~~~~l~s~s~D~~i~-iw~~~~~~~~~~~~~~~~~~~~~~~~  103 (355)
T d1nexb2          31 DDKM-IRVYDSINKKFL-----LQLSGHDGGVWALKYAHGGILVSGSTDRTVR-VWDIKKGCCTHVFEGHNSTVRCLDIV  103 (355)
T ss_dssp             TTTE-EEEEETTTTEEE-----EEEECCSSCEEEEEEETTTEEEEEETTCCEE-EEETTTTEEEEEECCCSSCEEEEEEE
T ss_pred             CCCe-EEEEECCCCcEE-----EEEECCCCCEEEEEEcCCCEEEEEecccccc-cccccccccccccccccccccccccc
Confidence            3554 668888888887     78899999999999998  899999999999 999999887776652 3444456678


Q ss_pred             EcCCCCeEEeecCCC-----CCc-----------------------------cccCCcceEEEeecCCCeEEEecCCcEE
Q 006825          388 SSVTGHKERRSSDER-----DTS-----------------------------SEKGGRRSSSATDDSQDVSFHGQERVRV  433 (630)
Q Consensus       388 fSpdG~~lasgS~D~-----dt~-----------------------------s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~V  433 (630)
                      +.++++++++++.|+     +..                             ....|...+.+.......++.+..|+.|
T Consensus       104 ~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~~i  183 (355)
T d1nexb2         104 EYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTL  183 (355)
T ss_dssp             EETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECCSSCEEEEEEETTEEEEEETTSCE
T ss_pred             cccccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeeeccccccccccccceeeeeccccee
Confidence            889999999998876     100                             0223444555555556668999999999


Q ss_pred             EEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECC
Q 006825          434 RQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSP  513 (630)
Q Consensus       434 riWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSp  513 (630)
                      ++|+....+     .+..+.+|...+.++.|+|++.++++++.|++|++||+.++..+..+     .+|...|.++++++
T Consensus       184 ~~~d~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~-----~~h~~~v~~~~~~~  253 (355)
T d1nexb2         184 IVWDVAQMK-----CLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTL-----QGHTALVGLLRLSD  253 (355)
T ss_dssp             EEEETTTTE-----EEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCCEEEEE-----CCCSSCCCEEEECS
T ss_pred             eeeeccccc-----ceeeeeccccccccccccccceeeecccccceEEeeecccccccccc-----cccccccccccccc
Confidence            999997664     46778899999999999999999999999999999999999888774     78999999999874


Q ss_pred             CCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeCCCCceEEeccCCCCEEEEE-EcCCCeEEEEECCCcEEE
Q 006825          514 EPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLS-WSKSQHLLSSSMDKTVRL  592 (630)
Q Consensus       514 dg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL~GHs~~V~sLa-fSPd~~LaSgS~DgtVrI  592 (630)
                        .++++++.|+.|                       ++|++.. ..+.+.+|...+.++. |++++.+++++.|++|+|
T Consensus       254 --~~l~~~~~dg~i-----------------------~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~g~d~~i~v  307 (355)
T d1nexb2         254 --KFLVSAAADGSI-----------------------RGWDAND-YSRKFSYHHTNLSAITTFYVSDNILVSGSENQFNI  307 (355)
T ss_dssp             --SEEEEECTTSEE-----------------------EEEETTT-CCEEEEEECTTCCCCCEEEECSSEEEEEETTEEEE
T ss_pred             --ceeeeeeccccc-----------------------ccccccc-cceecccccCCceEEEEEcCCCCEEEEEeCCEEEE
Confidence              689999999999                       7777732 2345566777777665 455644455556999999


Q ss_pred             EeCCCCcEEEEE-e-cCCceEEEE-cCCCcEEEEec
Q 006825          593 WHLSSKTCLKIF-S-HSDYDISLV-DRLMLRFAYGA  625 (630)
Q Consensus       593 WDl~tg~~l~t~-~-H~~~V~sVa-s~~~~~lAsgs  625 (630)
                      ||++++++++.. . |.+.|++|+ ++.. .+++++
T Consensus       308 wd~~tg~~~~~~~~~~~~~V~~v~~~~~~-~~~~~s  342 (355)
T d1nexb2         308 YNLRSGKLVHANILKDADQIWSVNFKGKT-LVAAVE  342 (355)
T ss_dssp             EETTTCCBCCSCTTTTCSEEEEEEEETTE-EEEEEE
T ss_pred             EECCCCCEEEEEecCCCCCEEEEEEcCCe-EEEEEE
Confidence            999999998653 4 999999999 7664 444443

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=5.4e-27  Score=233.82  Aligned_cols=259  Identities=15%  Similarity=0.142  Sum_probs=203.6

Q ss_pred             eeeecCccce-eEEEeec-ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCC------
Q 006825          333 EMCVGHSPIV-QELMRRQ-NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDT------  404 (630)
Q Consensus       333 ~~l~GHs~~V-~~Lafs~-~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt------  404 (630)
                      .+|.||...| .+|.|.. +||||+.|++|+ +||+.+++++.+++ +|.+.|++|+|+|+ .++++++.|+..      
T Consensus         6 ~tL~GH~~~vitc~~~~~~~l~tgs~Dg~i~-vWd~~~~~~~~~l~-~H~~~V~~l~~s~~-~~l~s~s~D~~i~iw~~~   82 (355)
T d1nexb2           6 TTLRGHMTSVITCLQFEDNYVITGADDKMIR-VYDSINKKFLLQLS-GHDGGVWALKYAHG-GILVSGSTDRTVRVWDIK   82 (355)
T ss_dssp             EEEECCSSSCEEEEEEETTEEEEEETTTEEE-EEETTTTEEEEEEE-CCSSCEEEEEEETT-TEEEEEETTCCEEEEETT
T ss_pred             EEECCcCCCcEEEEEECCCEEEEEeCCCeEE-EEECCCCcEEEEEE-CCCCCEEEEEEcCC-CEEEEEeccccccccccc
Confidence            5789998765 7788877 899999999999 99999999999999 99999999999996 578899888711      


Q ss_pred             -c------cccCCcceEEEeecCCCe--EEEecCCcEEEEEeCCCCcccc------------------eeeeeEecccCc
Q 006825          405 -S------SEKGGRRSSSATDDSQDV--SFHGQERVRVRQYGKSCKDLTA------------------LYKCQEIQAHNG  457 (630)
Q Consensus       405 -~------s~~gh~~~Vsa~~~s~d~--l~Sgs~Dg~VriWd~~~~el~~------------------~~~v~tL~gHt~  457 (630)
                       .      ....+...+....+.++.  +++++.|++|++|+........                  ...+.....|..
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (355)
T d1nexb2          83 KGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMA  162 (355)
T ss_dssp             TTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECCSS
T ss_pred             ccccccccccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeeeccc
Confidence             1      133334444555555555  8999999999999987543211                  011233445666


Q ss_pred             CEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeeccccccc
Q 006825          458 SIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSIN  537 (630)
Q Consensus       458 ~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~  537 (630)
                      .|...  .+++++++++..|+.|++||+.+++.+..+     .++...+..+.++|++.++++++.|+.|          
T Consensus       163 ~v~~~--~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~d~~i----------  225 (355)
T d1nexb2         163 SVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYIL-----SGHTDRIYSTIYDHERKRCISASMDTTI----------  225 (355)
T ss_dssp             CEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEE-----CCCSSCEEEEEEETTTTEEEEEETTSCE----------
T ss_pred             ccccc--ccccceeeeecccceeeeeecccccceeee-----eccccccccccccccceeeecccccceE----------
Confidence            66554  458899999999999999999998877663     6778889999999999999999999999          


Q ss_pred             ccccccCccccccEEEeC-CCCceEEeccCCCCEEEEEEcCCCeEEEEECCCcEEEEeCCCCcEEEEEecCCceEEEE--
Q 006825          538 RKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYDISLV--  614 (630)
Q Consensus       538 ~~s~s~d~~i~~~~Vwdl-sgk~l~tL~GHs~~V~sLafSPd~~LaSgS~DgtVrIWDl~tg~~l~t~~H~~~V~sVa--  614 (630)
                                   ++|+. ++.++..+.+|...|.+++|++ ++|++|+.||+|++||+.++.+...+ |...+.+++  
T Consensus       226 -------------~i~d~~~~~~~~~~~~h~~~v~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~~~~~~  290 (355)
T d1nexb2         226 -------------RIWDLENGELMYTLQGHTALVGLLRLSD-KFLVSAAADGSIRGWDANDYSRKFSY-HHTNLSAITTF  290 (355)
T ss_dssp             -------------EEEETTTCCEEEEECCCSSCCCEEEECS-SEEEEECTTSEEEEEETTTCCEEEEE-ECTTCCCCCEE
T ss_pred             -------------Eeeecccccccccccccccccccccccc-ceeeeeecccccccccccccceeccc-ccCCceEEEEE
Confidence                         78888 7889999999999999999986 79999999999999999988765544 444555444  


Q ss_pred             cCCCcEEEEecc
Q 006825          615 DRLMLRFAYGAF  626 (630)
Q Consensus       615 s~~~~~lAsgs~  626 (630)
                      .+.+..+++++.
T Consensus       291 ~~~~~~l~~g~d  302 (355)
T d1nexb2         291 YVSDNILVSGSE  302 (355)
T ss_dssp             EECSSEEEEEET
T ss_pred             cCCCCEEEEEeC
Confidence            556666666653

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=2.7e-27  Score=234.85  Aligned_cols=224  Identities=17%  Similarity=0.165  Sum_probs=173.3

Q ss_pred             ceeeecCccceeEEEeecceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCC-----CCcc
Q 006825          332 FEMCVGHSPIVQELMRRQNVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDER-----DTSS  406 (630)
Q Consensus       332 f~~l~GHs~~V~~Lafs~~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~-----dt~s  406 (630)
                      +.+|.||...|++|+|+| |+|||.|++|+ +||+.++.     . +|...|.+++|++++. +++++.|+     +...
T Consensus         6 i~~l~gH~~~I~~l~~s~-l~sgs~Dg~v~-~Wd~~~~~-----~-~h~~~V~~~~~~~~~~-~~s~s~D~~v~~w~~~~   76 (287)
T d1pgua2           6 LKTISGHNKGITALTVNP-LISGSYDGRIM-EWSSSSMH-----Q-DHSNLIVSLDNSKAQE-YSSISWDDTLKVNGITK   76 (287)
T ss_dssp             EEEECCCSSCEEEEETTT-TEEEETTSCEE-ETTTTEEE-----C-CCCSCEEEEECCSTTC-CEEEETTTEEEETTEEE
T ss_pred             eEEECCCCCceEEEEECc-EEEEeCCCeEE-EEECCCCC-----C-CCCCCEEEEEecCCCe-EEEEeeccccccccccc
Confidence            389999999999999998 89999999999 99987642     4 8999999999998654 56666554     0000


Q ss_pred             ---------------------------------------ccCCcceEEEeecCCCeEEEecC-CcEEEEEeCCCCcccce
Q 006825          407 ---------------------------------------EKGGRRSSSATDDSQDVSFHGQE-RVRVRQYGKSCKDLTAL  446 (630)
Q Consensus       407 ---------------------------------------~~gh~~~Vsa~~~s~d~l~Sgs~-Dg~VriWd~~~~el~~~  446 (630)
                                                             ...+...+.++......++.++. ++.|++|+....+.   
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~---  153 (287)
T d1pgua2          77 HEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEV---  153 (287)
T ss_dssp             EECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEETTEEEE---
T ss_pred             cccccceeeeeeccCCceEEEeecccceeeeccceeeeeeccccceeeeeeccCcceeeeccccceeeeeeccccce---
Confidence                                                   00011122333334444444444 45799998754321   


Q ss_pred             eeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCC----------CC
Q 006825          447 YKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPE----------PT  516 (630)
Q Consensus       447 ~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpd----------g~  516 (630)
                       .......|...|++|+|+|+|.+|++|+.||.|++||+.++......    +.+|...|.+++|+|.          +.
T Consensus       154 -~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~----~~~h~~~v~~~~~~p~~~~~~~~~~~~~  228 (287)
T d1pgua2         154 -SFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSR----WAFRTSKINAISWKPAEKGANEEEIEED  228 (287)
T ss_dssp             -EEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECC----SCCCSSCEEEEEECCCC------CCSCC
T ss_pred             -eeeeeeccCCceeEEEeccCccccccccccccccceeeccccccccc----ccccccccceeeecccccccccccCCCC
Confidence             12223458889999999999999999999999999999988765543    4789999999999875          46


Q ss_pred             EEEEeeCCCeeeeecccccccccccccCccccccEEEeC-C-CCceEEeccCCCCEEEEEEcCCCeEEEEECCCcEEEEe
Q 006825          517 SLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-S-DKPICSFQGHLDDVLDLSWSKSQHLLSSSMDKTVRLWH  594 (630)
Q Consensus       517 ~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-s-gk~l~tL~GHs~~V~sLafSPd~~LaSgS~DgtVrIWD  594 (630)
                      ++++++.|++|                       ++|++ . ++.+..+.+|...|++++|+|++.|+|++.|++||||+
T Consensus       229 ~l~sgs~D~~i-----------------------~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~~~l~s~g~D~~v~iW~  285 (287)
T d1pgua2         229 LVATGSLDTNI-----------------------FIYSVKRPMKIIKALNAHKDGVNNLLWETPSTLVSSGADACIKRWN  285 (287)
T ss_dssp             EEEEEETTSCE-----------------------EEEESSCTTCCEEETTSSTTCEEEEEEEETTEEEEEETTSCEEEEE
T ss_pred             eeEeecCCCeE-----------------------EEEECCCCCeEEEEeCCCCCCeEEEEECCCCEEEEEECCCeEEEEE
Confidence            89999999999                       78887 3 56788889999999999999998899999999999998


Q ss_pred             C
Q 006825          595 L  595 (630)
Q Consensus       595 l  595 (630)
                      +
T Consensus       286 i  286 (287)
T d1pgua2         286 V  286 (287)
T ss_dssp             E
T ss_pred             E
Confidence            6

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.95  E-value=4e-26  Score=227.66  Aligned_cols=230  Identities=15%  Similarity=0.173  Sum_probs=193.8

Q ss_pred             CceeEEecCCccCCEEEEEEcCCCCeEEeecCCC-----C--C----ccccCCcceEEEeecCCCe--EEEecCCcEEEE
Q 006825          369 GGMKSKKKGSWFKSIRTVASSVTGHKERRSSDER-----D--T----SSEKGGRRSSSATDDSQDV--SFHGQERVRVRQ  435 (630)
Q Consensus       369 G~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~-----d--t----~s~~gh~~~Vsa~~~s~d~--l~Sgs~Dg~Vri  435 (630)
                      -+.+++|+ ||.+.|++|+|+|+|++|++|+.|+     +  +    ..+.+|...|.+++|++++  +++++.|+.+++
T Consensus        45 ~~~~~tL~-GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~  123 (340)
T d1tbga_          45 MRTRRTLR-GHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSI  123 (340)
T ss_dssp             CCEEEEEC-CCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECTTSSEEEEEETTCCEEE
T ss_pred             eeeeEEEC-CCCCCEEEEEECCCCCEEEEEECCCceeeeecccceeEEEEecccccEEeeEeeccceeeeeecccceeec
Confidence            35677888 9999999999999999999999997     2  2    2267899999999999987  899999999999


Q ss_pred             EeCCCCcccce----------------------------------------eeeeEecccCcCEEEEEEccCCCEEEEEe
Q 006825          436 YGKSCKDLTAL----------------------------------------YKCQEIQAHNGSIWSIKFSLDGRYLASAG  475 (630)
Q Consensus       436 Wd~~~~el~~~----------------------------------------~~v~tL~gHt~~V~sVaFSpDG~~LASgS  475 (630)
                      |+.........                                        ........+...|..+.+.+.+.++++|+
T Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (340)
T d1tbga_         124 YNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGA  203 (340)
T ss_dssp             EESSSSCSCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred             ccccccccccccceecccccccccccccccccccccccccccccccccccccccccccccceeEeeeccccccceeEEee
Confidence            98654321110                                        00122234566788899999999999999


Q ss_pred             CCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeC
Q 006825          476 EDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL  555 (630)
Q Consensus       476 ~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl  555 (630)
                      .|++|++||+.+++.+..+     .+|...|.+++|+|++.+|++++.|+.|                       ++|++
T Consensus       204 ~d~~v~i~d~~~~~~~~~~-----~~h~~~i~~v~~~p~~~~l~s~s~d~~i-----------------------~~~~~  255 (340)
T d1tbga_         204 CDASAKLWDVREGMCRQTF-----TGHESDINAICFFPNGNAFATGSDDATC-----------------------RLFDL  255 (340)
T ss_dssp             TTTEEEEEETTTTEEEEEE-----CCCSSCEEEEEECTTSSEEEEEETTSCE-----------------------EEEET
T ss_pred             cCceEEEEECCCCcEEEEE-----eCCCCCeEEEEECCCCCEEEEEeCCCeE-----------------------EEEee
Confidence            9999999999999888774     7899999999999999999999999999                       67777


Q ss_pred             -CCCceEEe--ccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCCCcEEEEEe-cCCceEEEE-cCCCcEEEEecce
Q 006825          556 -SDKPICSF--QGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYDISLV-DRLMLRFAYGAFL  627 (630)
Q Consensus       556 -sgk~l~tL--~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg~~l~t~~-H~~~V~sVa-s~~~~~lAsgs~~  627 (630)
                       ..+.+..+  ..|...|++++|+|+ .+|++|+.||+|+|||+.+++++.++. |...|++|+ ++++.++++++.+
T Consensus       256 ~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~H~~~V~~l~~s~d~~~l~s~s~D  333 (340)
T d1tbga_         256 RADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWD  333 (340)
T ss_dssp             TTTEEEEEECCTTCCSCEEEEEECSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETT
T ss_pred             cccccccccccccccCceEEEEECCCCCEEEEEECCCEEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEccC
Confidence             34454444  457778999999999 999999999999999999999999998 999999999 8888889888754

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.94  E-value=7.5e-26  Score=223.15  Aligned_cols=283  Identities=7%  Similarity=-0.020  Sum_probs=193.1

Q ss_pred             ceeeecCccceeEEEeec---ceEeecCCCccEecccCCCCceeEEec--CCccCCEEEEEEcCC-CCeEEeecCCCC--
Q 006825          332 FEMCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKKK--GSWFKSIRTVASSVT-GHKERRSSDERD--  403 (630)
Q Consensus       332 f~~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~lk--~gH~~~V~sVAfSpd-G~~lasgS~D~d--  403 (630)
                      ++.+.+|+..|++|+|+|   +||+||.|++|| +||+.++.....+.  .+|...|.+|+|+|+ +.++++|+.|+.  
T Consensus         4 v~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~-iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~   82 (342)
T d1yfqa_           4 VQIEQAPKDYISDIKIIPSKSLLLITSWDGSLT-VYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEIL   82 (342)
T ss_dssp             EECSSCCSSCEEEEEEEGGGTEEEEEETTSEEE-EEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEE
T ss_pred             EEcCCCCCCCEEEEEEeCCCCEEEEEECCCeEE-EEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEccccccee
Confidence            467789999999999999   799999999999 99998766543332  279999999999986 458999988871  


Q ss_pred             ---Cc--c-------ccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEeccc--CcCEEEEEEccCCC
Q 006825          404 ---TS--S-------EKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAH--NGSIWSIKFSLDGR  469 (630)
Q Consensus       404 ---t~--s-------~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gH--t~~V~sVaFSpDG~  469 (630)
                         ..  .       .................+++++.++++++||......... ....+..|  ......+.+.+.+.
T Consensus        83 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  161 (342)
T d1yfqa_          83 KVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVI-AVKNLNSNNTKVKNKIFTMDTNSS  161 (342)
T ss_dssp             EECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCE-EEEESCSSSSSSCCCEEEEEECSS
T ss_pred             eeecccccccccccccccccccccccccccccccccccccccceeecccccccee-eecccccccccceeeeeeeeccCC
Confidence               10  0       1112223334444555689999999999999764432211 22333333  23455677788999


Q ss_pred             EEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEE-CCCCCEEEEeeCCCeeeeecccccccccccccCcccc
Q 006825          470 YLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANG-SPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVV  548 (630)
Q Consensus       470 ~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svaf-Spdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~  548 (630)
                      .+++++.|++|++|++...........  ...+...+..+.+ ..++..+++++.|+.+.+|..............    
T Consensus       162 ~~~~~~~d~~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~----  235 (342)
T d1yfqa_         162 RLIVGMNNSQVQWFRLPLCEDDNGTIE--ESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKR----  235 (342)
T ss_dssp             EEEEEESTTEEEEEESSCCTTCCCEEE--ECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTC----
T ss_pred             ceeeecCCCcEEEEecccCcccceeee--ecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeecccc----
Confidence            999999999999999987765444321  1333444555554 446889999999999977765432211111100    


Q ss_pred             ccEEEeCCCCceEEeccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCCCcEEEEEe--cCCceEEEEcCCCcEEEEec
Q 006825          549 PETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS--HSDYDISLVDRLMLRFAYGA  625 (630)
Q Consensus       549 ~~~Vwdlsgk~l~tL~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg~~l~t~~--H~~~V~sVas~~~~~lAsgs  625 (630)
                        ..+. .........+|...|++|+|+|+ .+||||+.||+|+|||+.+++++.++.  |...|.+++ +++..+++++
T Consensus       236 --~~~~-~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~~~~~~~~~~~~s-~~~~~l~~a~  311 (342)
T d1yfqa_         236 --FAFR-CHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA-CSDNILCLAT  311 (342)
T ss_dssp             --EEEE-CCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEE-ECSSEEEEEE
T ss_pred             --ceee-eeeeccCCCcccccceeEEecCCccEEEEECCCCEEEEEECCCCcEEEEecCCCCCEEEEEE-eCCCEEEEEE
Confidence              0000 01112224578889999999999 999999999999999999999999997  444555554 4445555554


Q ss_pred             c
Q 006825          626 F  626 (630)
Q Consensus       626 ~  626 (630)
                      .
T Consensus       312 s  312 (342)
T d1yfqa_         312 S  312 (342)
T ss_dssp             E
T ss_pred             c
Confidence            3

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=1.2e-24  Score=215.58  Aligned_cols=245  Identities=14%  Similarity=0.127  Sum_probs=189.5

Q ss_pred             CCCceeEEEEcCCCceEeeecceeeecCccceeEEEeec-ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEc
Q 006825          311 EDGTWKKVKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQ-NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASS  389 (630)
Q Consensus       311 ~dg~~~~l~dv~TG~~lt~eef~~l~GHs~~V~~Lafs~-~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfS  389 (630)
                      .||. .++|++.||+++     .++.||...|.+++|+| .|++|+.|++++ +|+........... .+...+....+.
T Consensus        35 ~Dg~-i~vWd~~~~~~~-----~~~~~h~~~V~~v~~~~~~l~s~s~D~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~  106 (342)
T d2ovrb2          35 DDNT-LKVWSAVTGKCL-----RTLVGHTGGVWSSQMRDNIIISGSTDRTLK-VWNAETGECIHTLY-GHTSTVRCMHLH  106 (342)
T ss_dssp             TTSC-EEEEETTTCCEE-----EECCCCSSCEEEEEEETTEEEEEETTSCEE-EEETTTTEEEEEEC-CCSSCEEEEEEE
T ss_pred             CCCe-EEEEECCCCCEE-----EEEeCCCCCEEEEEeCCCccccceeccccc-ccccccccceeccc-ccceeEeeeecc
Confidence            3554 557777778777     77889999999999998 789999999999 99987776665555 444444332222


Q ss_pred             --------------------------------------CCCCeEEeecCCCC-----------CccccCCcceEEEeecC
Q 006825          390 --------------------------------------VTGHKERRSSDERD-----------TSSEKGGRRSSSATDDS  420 (630)
Q Consensus       390 --------------------------------------pdG~~lasgS~D~d-----------t~s~~gh~~~Vsa~~~s  420 (630)
                                                            +...+++.++.++.           ...+.+|...+.+..+.
T Consensus       107 ~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~  186 (342)
T d2ovrb2         107 EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFD  186 (342)
T ss_dssp             TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEEC
T ss_pred             cccccccccceeEEEeecccccceeeeecccccceeeccccceeeeecCCCeEEEeecccceeeEEEcCcccccccccCC
Confidence                                                  22233444444431           12256788888888888


Q ss_pred             CCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeeccccc
Q 006825          421 QDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQED  500 (630)
Q Consensus       421 ~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~  500 (630)
                      ...+++++.|++|++|+....+     +++.+.+|...|.+++++  +++|++|+.|++|++||+...+....+.  ...
T Consensus       187 ~~~l~s~~~dg~i~~~d~~~~~-----~~~~~~~~~~~v~~~~~~--~~~l~s~s~d~~i~iwd~~~~~~~~~~~--~~~  257 (342)
T d2ovrb2         187 GIHVVSGSLDTSIRVWDVETGN-----CIHTLTGHQSLTSGMELK--DNILVSGNADSTVKIWDIKTGQCLQTLQ--GPN  257 (342)
T ss_dssp             SSEEEEEETTSCEEEEETTTCC-----EEEEECCCCSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEEC--STT
T ss_pred             CCEEEEEeCCCeEEEeecccce-----eeeEecccccceeEEecC--CCEEEEEcCCCEEEEEeccccccccccc--ccc
Confidence            8889999999999999997764     467899999999998885  5699999999999999999887766642  234


Q ss_pred             CcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeC-CCCceEEec-----cCCCCEEEEE
Q 006825          501 GHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQ-----GHLDDVLDLS  574 (630)
Q Consensus       501 gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL~-----GHs~~V~sLa  574 (630)
                      .|...+.++.++  +.++++++.|++|                       ++|++ ++++++++.     +|...|++++
T Consensus       258 ~~~~~~~~~~~~--~~~~~s~s~Dg~i-----------------------~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~  312 (342)
T d2ovrb2         258 KHQSAVTCLQFN--KNFVITSSDDGTV-----------------------KLWDLKTGEFIRNLVTLESGGSGGVVWRIR  312 (342)
T ss_dssp             SCSSCEEEEEEC--SSEEEEEETTSEE-----------------------EEEETTTCCEEEEEEECTTGGGTCEEEEEE
T ss_pred             eeeeceeecccC--CCeeEEEcCCCEE-----------------------EEEECCCCCEEEEEecccCCCCCCCEEEEE
Confidence            566777777775  5689999999999                       88887 788888773     6888999999


Q ss_pred             EcCC-CeEEEEECCCc----EEEEeCCC
Q 006825          575 WSKS-QHLLSSSMDKT----VRLWHLSS  597 (630)
Q Consensus       575 fSPd-~~LaSgS~Dgt----VrIWDl~t  597 (630)
                      |+|+ .+|++|+.||+    |++||+..
T Consensus       313 ~s~~~~~la~g~~dGt~~~~l~~~Df~~  340 (342)
T d2ovrb2         313 ASNTKLVCAVGSRNGTEETKLLVLDFDV  340 (342)
T ss_dssp             ECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred             ECCCCCEEEEEeCCCCCeeEEEEEeCCC
Confidence            9999 88999999997    99999863

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=7e-25  Score=212.33  Aligned_cols=245  Identities=16%  Similarity=0.201  Sum_probs=191.3

Q ss_pred             CCceeEEEEcCCCceEeeecceeeecCccceeEEEeec-ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcC
Q 006825          312 DGTWKKVKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQ-NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSV  390 (630)
Q Consensus       312 dg~~~~l~dv~TG~~lt~eef~~l~GHs~~V~~Lafs~-~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSp  390 (630)
                      ||. .++||+.+++++     .+|.||+..|.+|+|.+ +|++|+.|++++ +|++.++....... .+.....  ++.+
T Consensus        34 Dg~-i~vWd~~~~~~~-----~~l~~H~~~V~~v~~~~~~l~s~s~D~~i~-~~~~~~~~~~~~~~-~~~~~~~--~~~~  103 (293)
T d1p22a2          34 DNT-IKIWDKNTLECK-----RILTGHTGSVLCLQYDERVIITGSSDSTVR-VWDVNTGEMLNTLI-HHCEAVL--HLRF  103 (293)
T ss_dssp             SSC-EEEEESSSCCEE-----EEECCCSSCEEEEECCSSEEEEEETTSCEE-EEESSSCCEEEEEC-CCCSCEE--EEEC
T ss_pred             CCe-EEEEECCCCcEE-----EEEecCCCCEeeeecccceeeccccccccc-cccccccccccccc-ccccccc--cccc
Confidence            443 456666677777     78899999999999988 899999999999 99999999888777 4444443  3445


Q ss_pred             CCCeEEeecCCCC--------------CccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccC
Q 006825          391 TGHKERRSSDERD--------------TSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHN  456 (630)
Q Consensus       391 dG~~lasgS~D~d--------------t~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt  456 (630)
                      ....++++..++.              ......|...+.+..+....+++++.|+.|++|+....+     .+..+.+|.
T Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~d~~i~~~d~~~~~-----~~~~~~~~~  178 (293)
T d1p22a2         104 NNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCE-----FVRTLNGHK  178 (293)
T ss_dssp             CTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTTCC-----EEEEEECCS
T ss_pred             cccceeecccccceeEeeccccccccccccccccccccccceecccccccccCCCceeeecCCCCc-----EEEEEcccc
Confidence            5556666665551              112577888899999998899999999999999998765     467889999


Q ss_pred             cCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccc
Q 006825          457 GSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSI  536 (630)
Q Consensus       457 ~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~  536 (630)
                      ..|..+.++  +.+|++++.|++|+|||+.+...+..+     .+|...+..  +.+++.+|++++.|+.|++|+.....
T Consensus       179 ~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~-----~~~~~~v~~--~~~~~~~l~sg~~dg~i~iwd~~~~~  249 (293)
T d1p22a2         179 RGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVL-----EGHEELVRC--IRFDNKRIVSGAYDGKIKVWDLVAAL  249 (293)
T ss_dssp             SCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEE-----CCCSSCEEE--EECCSSEEEEEETTSCEEEEEHHHHT
T ss_pred             cccccccCC--CCeEEEecCCCEEEEEecccceeeeee-----cccceeeee--ccccceEEEEEcCCCEEEEEECCCCc
Confidence            999998885  678999999999999999998887764     677777765  45678899999999999666543211


Q ss_pred             cccccccCccccccEEEeCCCCceEEeccCCCCEEEEEEcCCCeEEEEECCCcEEEEe
Q 006825          537 NRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKSQHLLSSSMDKTVRLWH  594 (630)
Q Consensus       537 ~~~s~s~d~~i~~~~Vwdlsgk~l~tL~GHs~~V~sLafSPd~~LaSgS~DgtVrIWD  594 (630)
                      ....             .....++.++.+|.+.|++|+|++ .+|+|||.|++|+|||
T Consensus       250 ~~~~-------------~~~~~~~~~~~~H~~~V~~v~~d~-~~l~s~s~Dg~i~iWD  293 (293)
T d1p22a2         250 DPRA-------------PAGTLCLRTLVEHSGRVFRLQFDE-FQIVSSSHDDTILIWD  293 (293)
T ss_dssp             STTS-------------CTTTTEEEEECCCSSCCCCEEECS-SCEEECCSSSEEEEEC
T ss_pred             cccc-------------cCCceeeEEecCCCCCEEEEEEcC-CEEEEEecCCEEEEeC
Confidence            1000             002356788999999999999965 7899999999999997

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=5.3e-25  Score=213.18  Aligned_cols=257  Identities=14%  Similarity=0.163  Sum_probs=207.1

Q ss_pred             eecceeeecCccceeEEEeec-ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCC---
Q 006825          329 IEEFEMCVGHSPIVQELMRRQ-NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDT---  404 (630)
Q Consensus       329 ~eef~~l~GHs~~V~~Lafs~-~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt---  404 (630)
                      +++++...+|+..|++|.|.. .|||||.|++|+ +||+.+++++++++ +|...|.+|+|  ++++|++++.|+..   
T Consensus         5 ~~~i~~~~~~~~~V~c~~~d~~~l~sgs~Dg~i~-vWd~~~~~~~~~l~-~H~~~V~~v~~--~~~~l~s~s~D~~i~~~   80 (293)
T d1p22a2           5 LQRIHCRSETSKGVYCLQYDDQKIVSGLRDNTIK-IWDKNTLECKRILT-GHTGSVLCLQY--DERVIITGSSDSTVRVW   80 (293)
T ss_dssp             CCCEECCCSSCCCEEEEECCSSEEEEEESSSCEE-EEESSSCCEEEEEC-CCSSCEEEEEC--CSSEEEEEETTSCEEEE
T ss_pred             EEEEeccCCCCCCEEEEEEcCCEEEEEeCCCeEE-EEECCCCcEEEEEe-cCCCCEeeeec--ccceeeccccccccccc
Confidence            344566678999999998876 899999999999 99999999999999 99999998876  67899999998721   


Q ss_pred             ----c----cccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeC
Q 006825          405 ----S----SEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGE  476 (630)
Q Consensus       405 ----~----s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~  476 (630)
                          .    ....+.............++++..++.+++|+......  ......+..|...|..+.+.  ..++++++.
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~v~~~~~~--~~~~~~~s~  156 (293)
T d1p22a2          81 DVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTD--ITLRRVLVGHRAAVNVVDFD--DKYIVSASG  156 (293)
T ss_dssp             ESSSCCEEEEECCCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSC--CEEEEEECCCSSCEEEEEEE--TTEEEEEET
T ss_pred             ccccccccccccccccccccccccccceeecccccceeEeecccccc--ccccccccccccccccceec--ccccccccC
Confidence                1    13333444445555556689999999999999876543  23456778999999988885  457899999


Q ss_pred             CCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeC-
Q 006825          477 DCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-  555 (630)
Q Consensus       477 DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-  555 (630)
                      |++|++||+.+++.+..+     .++...+..+.++  +.++++++.|+.|                       ++|++ 
T Consensus       157 d~~i~~~d~~~~~~~~~~-----~~~~~~v~~~~~~--~~~l~~~~~dg~i-----------------------~i~d~~  206 (293)
T d1p22a2         157 DRTIKVWNTSTCEFVRTL-----NGHKRGIACLQYR--DRLVVSGSSDNTI-----------------------RLWDIE  206 (293)
T ss_dssp             TSEEEEEETTTCCEEEEE-----ECCSSCEEEEEEE--TTEEEEEETTSCE-----------------------EEEETT
T ss_pred             CCceeeecCCCCcEEEEE-----cccccccccccCC--CCeEEEecCCCEE-----------------------EEEecc
Confidence            999999999999888774     6777788777775  5689999999999                       78888 


Q ss_pred             CCCceEEeccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCC---------CcEEEEEe-cCCceEEEE-cCCCcEEEE
Q 006825          556 SDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSS---------KTCLKIFS-HSDYDISLV-DRLMLRFAY  623 (630)
Q Consensus       556 sgk~l~tL~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~t---------g~~l~t~~-H~~~V~sVa-s~~~~~lAs  623 (630)
                      +.+.+..+.+|...|..+  +++ .+|++|+.||+|+|||+.+         ..+++++. |.+.|++|+ ++  ..|++
T Consensus       207 ~~~~~~~~~~~~~~v~~~--~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~d~--~~l~s  282 (293)
T d1p22a2         207 CGACLRVLEGHEELVRCI--RFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDE--FQIVS  282 (293)
T ss_dssp             TCCEEEEECCCSSCEEEE--ECCSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEECS--SCEEE
T ss_pred             cceeeeeecccceeeeec--cccceEEEEEcCCCEEEEEECCCCccccccCCceeeEEecCCCCCEEEEEEcC--CEEEE
Confidence            678888999999988765  455 8999999999999999743         45788888 999999998 44  45777


Q ss_pred             ecce
Q 006825          624 GAFL  627 (630)
Q Consensus       624 gs~~  627 (630)
                      ++.+
T Consensus       283 ~s~D  286 (293)
T d1p22a2         283 SSHD  286 (293)
T ss_dssp             CCSS
T ss_pred             EecC
Confidence            7664

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.93  E-value=1.8e-24  Score=221.42  Aligned_cols=237  Identities=11%  Similarity=0.032  Sum_probs=188.7

Q ss_pred             ceeEEEeec---ceEeecCCC-ccEecccCCCC--ceeEEecCCc-cCCEEEEEEcC--CCCeEEeecCCCC-----C--
Q 006825          341 IVQELMRRQ---NVEEGNKDS-FDLNNNGSSGG--GMKSKKKGSW-FKSIRTVASSV--TGHKERRSSDERD-----T--  404 (630)
Q Consensus       341 ~V~~Lafs~---~laSgS~D~-tvr~vWD~~tG--~~~~~lk~gH-~~~V~sVAfSp--dG~~lasgS~D~d-----t--  404 (630)
                      .+..|+|.|   .|+.++.+. .++ .|+....  .....+. +| ...|.+|+|+|  +|+++++|+.|+.     .  
T Consensus        19 ~~t~l~~~~~~~~la~~~~~~~~i~-~~~~~~~~~~~~~~~~-gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~   96 (325)
T d1pgua1          19 FTTHLSYDPTTNAIAYPCGKSAFVR-CLDDGDSKVPPVVQFT-GHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTF   96 (325)
T ss_dssp             CCCCCEEETTTTEEEEEETTEEEEE-ECCSSCCSSCSEEEEC-TTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEE
T ss_pred             CeEEEEECCCCCEEEEEeCCCEEEE-EEeCCCCCccceEEEe-CCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecC
Confidence            456788988   677666554 456 8886543  4566777 66 57899999998  6789999998871     1  


Q ss_pred             ------------ccccCCcceEEEeecCCCe--EEE--ecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCC
Q 006825          405 ------------SSEKGGRRSSSATDDSQDV--SFH--GQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDG  468 (630)
Q Consensus       405 ------------~s~~gh~~~Vsa~~~s~d~--l~S--gs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG  468 (630)
                                  .....|...|.++.+++++  +++  ++.+..+++|+..+++     ++.++.+|...|.+++|+|++
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~-----~~~~~~~h~~~v~~~~~~~~~  171 (325)
T d1pgua1          97 DKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGN-----SLGEVSGHSQRINACHLKQSR  171 (325)
T ss_dssp             EGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCC-----EEEECCSCSSCEEEEEECSSS
T ss_pred             CcceeeeecccccccccccCcEEEEEECCCCCccceeeccccceEEEEeecccc-----cceeeeecccccccccccccc
Confidence                        0134577789999999887  443  3457789999887654     578899999999999999988


Q ss_pred             C-EEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCC-CCEEEEeeCCCeeeeecccccccccccccCcc
Q 006825          469 R-YLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPE-PTSLSPKHLDNHLEKKRRGRSINRKSLSLDHM  546 (630)
Q Consensus       469 ~-~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpd-g~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~  546 (630)
                      . ++++++.|+.|++||+...+....+.  ...+|...|.+++|+|+ +.++++++.|+.|                   
T Consensus       172 ~~~~~~~~~d~~v~~~d~~~~~~~~~~~--~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i-------------------  230 (325)
T d1pgua1         172 PMRSMTVGDDGSVVFYQGPPFKFSASDR--THHKQGSFVRDVEFSPDSGEFVITVGSDRKI-------------------  230 (325)
T ss_dssp             SCEEEEEETTTEEEEEETTTBEEEEEEC--SSSCTTCCEEEEEECSTTCCEEEEEETTCCE-------------------
T ss_pred             cceEEEeecccccccccccccccceecc--cccCCCCccEEeeeccccceeccccccccce-------------------
Confidence            6 47889999999999998876655532  24678889999999997 7899999999999                   


Q ss_pred             ccccEEEeC-CCCceEEeccCCCCEEEEEEc---CC-CeEEEEECCCcEEEEeCCCCcEEEEEe-cCCc
Q 006825          547 VVPETVFAL-SDKPICSFQGHLDDVLDLSWS---KS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDY  609 (630)
Q Consensus       547 i~~~~Vwdl-sgk~l~tL~GHs~~V~sLafS---Pd-~~LaSgS~DgtVrIWDl~tg~~l~t~~-H~~~  609 (630)
                          ++|++ +++.+.+|.+|...|..+.|+   |+ ++|++++.|++|+|||+.++++++.+. |...
T Consensus       231 ----~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~  295 (325)
T d1pgua1         231 ----SCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQ  295 (325)
T ss_dssp             ----EEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTC
T ss_pred             ----eeeeeccccccccccccccccccceeeeeccCCCEEEEEeCCCeEEEEECCCCCEEEEEEecCCc
Confidence                78887 788999999999887666655   56 899999999999999999999999987 4443

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.91  E-value=5.9e-23  Score=214.94  Aligned_cols=208  Identities=16%  Similarity=0.097  Sum_probs=144.5

Q ss_pred             CccceeEEEeec--------ceEeecCCCccEecccCCCCce-eEEecCCccCCEEEEEEcCCCCeEEeecCCCCCcccc
Q 006825          338 HSPIVQELMRRQ--------NVEEGNKDSFDLNNNGSSGGGM-KSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEK  408 (630)
Q Consensus       338 Hs~~V~~Lafs~--------~laSgS~D~tvr~vWD~~tG~~-~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~  408 (630)
                      +...++.+++.+        .+++++.|++++ +|++..... ...+. .+......+.....              ...
T Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~-vw~~~~~~~~~~~~~-~~~~~~~~~~~~~~--------------~~~  181 (393)
T d1sq9a_         118 KKHSFWALKWGASNDRLLSHRLVATDVKGTTY-IWKFHPFADESNSLT-LNWSPTLELQGTVE--------------SPM  181 (393)
T ss_dssp             GGSCEEEEEEECCC----CEEEEEEETTSCEE-EEEEESSSSHHHHTT-TCCCCEEEEEEEEC--------------CSS
T ss_pred             CCCceEEEEEecCCCcccccEEEEEcCCCcEE-EEEeecCCcccceee-eeeccceeccccee--------------ccc
Confidence            445566666654        689999999999 999754321 11111 22222211111110              022


Q ss_pred             CCcceEEEeecCCCe-EEEecCCcEEEEEeCCCCccc-ceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCc---EEEE
Q 006825          409 GGRRSSSATDDSQDV-SFHGQERVRVRQYGKSCKDLT-ALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCV---IHVW  483 (630)
Q Consensus       409 gh~~~Vsa~~~s~d~-l~Sgs~Dg~VriWd~~~~el~-~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~Dgt---IrVW  483 (630)
                      .+...+.++++++++ +++|+.|++|++||+.+.+.. .+...+.+.+|..+|++|+|+|||++|++|+.|++   |+||
T Consensus       182 ~~~~~~~~v~~s~dg~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lw  261 (393)
T d1sq9a_         182 TPSQFATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLY  261 (393)
T ss_dssp             SSCCCCCEEEECTTSEEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEE
T ss_pred             CCCCcEEEEEECCCCEEEEEeCCCcEEEEeecccccccccccccccccccceEEEcccccccceeeeecCCCCcceeeec
Confidence            233344555555555 678899999999999876532 22334677899999999999999999999999985   9999


Q ss_pred             ECcCCceeeeeec--------ccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeC
Q 006825          484 QVVESERKGELLE--------KQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL  555 (630)
Q Consensus       484 Dl~tg~~~~~l~~--------~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl  555 (630)
                      |+.+++.+..+..        ....+|...|.+++|+|++++|++++.|++|                       ++|++
T Consensus       262 d~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v-----------------------~vWd~  318 (393)
T d1sq9a_         262 ETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKL-----------------------RFWDV  318 (393)
T ss_dssp             ETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEE-----------------------EEEET
T ss_pred             ccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEE-----------------------EEEEC
Confidence            9999988776521        1235899999999999999999999999999                       88888


Q ss_pred             -CCCceEEeccCCCCEE----EEEEcCC-CeEEEE
Q 006825          556 -SDKPICSFQGHLDDVL----DLSWSKS-QHLLSS  584 (630)
Q Consensus       556 -sgk~l~tL~GHs~~V~----sLafSPd-~~LaSg  584 (630)
                       +++++.+|.||.+.|.    .++|+|+ ..++++
T Consensus       319 ~~g~~~~~l~gH~~~v~~~~~~~~~~~~~~~~~~~  353 (393)
T d1sq9a_         319 KTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEP  353 (393)
T ss_dssp             TTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSC
T ss_pred             CCCCEEEEECCcCCcccCCccEEEECCCCCEEEEc
Confidence             7899999999987764    3566665 444433

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.90  E-value=2.5e-22  Score=202.33  Aligned_cols=240  Identities=10%  Similarity=0.017  Sum_probs=174.7

Q ss_pred             EEEEcCCCceEeeecceeeecCccceeEEEeec---ceEeecCC--CccEecccCCCCceeEEecCCccCCEEEEEEcCC
Q 006825          317 KVKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQ---NVEEGNKD--SFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVT  391 (630)
Q Consensus       317 ~l~dv~TG~~lt~eef~~l~GHs~~V~~Lafs~---~laSgS~D--~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpd  391 (630)
                      .+|++.+|+.+     +  .+|...|+.++|+|   .|++++.|  .+++ +||+.+|+.. ++. +|...|.+++|+||
T Consensus        27 ~v~d~~~~~~~-----~--~~~~~~v~~~~~spDg~~l~~~~~~~g~~v~-v~d~~~~~~~-~~~-~~~~~v~~~~~spd   96 (360)
T d1k32a3          27 FIQDVSGTYVL-----K--VPEPLRIRYVRRGGDTKVAFIHGTREGDFLG-IYDYRTGKAE-KFE-ENLGNVFAMGVDRN   96 (360)
T ss_dssp             EEECTTSSBEE-----E--CSCCSCEEEEEECSSSEEEEEEEETTEEEEE-EEETTTCCEE-ECC-CCCCSEEEEEECTT
T ss_pred             EEEECCCCcEE-----E--ccCCCCEEEEEECCCCCEEEEEEcCCCCEEE-EEECCCCcEE-Eee-CCCceEEeeeeccc
Confidence            34555555544     2  37889999999999   56666554  3788 9999887655 455 89999999999999


Q ss_pred             CCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEE
Q 006825          392 GHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYL  471 (630)
Q Consensus       392 G~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~L  471 (630)
                      |+++++                             ++.++.+++|+..+.+     ....+..|...+.+++|+|||++|
T Consensus        97 g~~l~~-----------------------------~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~spdg~~l  142 (360)
T d1k32a3          97 GKFAVV-----------------------------ANDRFEIMTVDLETGK-----PTVIERSREAMITDFTISDNSRFI  142 (360)
T ss_dssp             SSEEEE-----------------------------EETTSEEEEEETTTCC-----EEEEEECSSSCCCCEEECTTSCEE
T ss_pred             ccccce-----------------------------eccccccccccccccc-----eeeeeecccccccchhhccceeee
Confidence            998854                             4566789999998765     356788899999999999999999


Q ss_pred             EEE----------eCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeeccccccc----
Q 006825          472 ASA----------GEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSIN----  537 (630)
Q Consensus       472 ASg----------S~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~----  537 (630)
                      |.+          ..++.+++|++.+++....      ..+...+..++|+|+|++|++++.++.+.+|+......    
T Consensus       143 a~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~------~~~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~~~~~~~~~  216 (360)
T d1k32a3         143 AYGFPLKHGETDGYVMQAIHVYDMEGRKIFAA------TTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEV  216 (360)
T ss_dssp             EEEEEECSSTTCSCCEEEEEEEETTTTEEEEC------SCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCS
T ss_pred             eeeccccccceeeccccceeeeccccCceeee------cccccccccccccCCCCEEEEEeCCCceEcccccccceeecc
Confidence            865          3556799999988765443      45667788899999999999999998877765322100    


Q ss_pred             ---------------ccccccCccc-------------------------------------------------------
Q 006825          538 ---------------RKSLSLDHMV-------------------------------------------------------  547 (630)
Q Consensus       538 ---------------~~s~s~d~~i-------------------------------------------------------  547 (630)
                                     ...++.+...                                                       
T Consensus       217 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (360)
T d1k32a3         217 VSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPE  296 (360)
T ss_dssp             CBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCC
T ss_pred             ccceEEEecccCccccceECCCcCcccccceeecccccceeecccCcCceeEeeecCCCceEEEEEecCCCeeEEEecCC
Confidence                           0000000000                                                       


Q ss_pred             -cccEEEeCCCCceEEeccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCCCcEEEEEe-cCCc
Q 006825          548 -VPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDY  609 (630)
Q Consensus       548 -~~~~Vwdlsgk~l~tL~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg~~l~t~~-H~~~  609 (630)
                       ..-.+|++..+.+.   .|.+.|.+++|+|| ++|++++.||+|++||+.+++...++. +..+
T Consensus       297 ~~~i~~~d~~~~~~~---~~~~~v~~~~~SpDG~~l~~~~~Dg~i~v~d~~~~~~~~~~~~d~~~  358 (360)
T d1k32a3         297 KGVLLKYDVKTRKVT---EVKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPEDERTVETDKRP  358 (360)
T ss_dssp             CEEEEEEETTTCCEE---EEEEEEEEEEECTTSCEEEEEETTSCEEEEESSCTTSCEECCCCSSC
T ss_pred             CCEEEEEECCCCeEE---EecCCcCEEEECCCCCEEEEEECCCeEEEEECCCCCcceEEEecccc
Confidence             00135555433333   34456899999999 899999999999999999998887776 5544

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.90  E-value=4.6e-22  Score=195.69  Aligned_cols=285  Identities=11%  Similarity=-0.018  Sum_probs=203.8

Q ss_pred             ceeecCCCCcccCCCccccccCCCCCcccccccEEEEECCCCcEEEEeeecCCCceeEEEEcCCCceEeeecceeeecCc
Q 006825          260 SMSINGNGNYIGNSGEVVEDFDGNGTAGVAEQGCLIKNLDNGKEFVVNEIQEDGTWKKVKEVGTGRQLTIEEFEMCVGHS  339 (630)
Q Consensus       260 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~LddG~~~~v~e~~~dg~~~~l~dv~TG~~lt~eef~~l~GHs  339 (630)
                      +|+|||||++|              +++..|+.++||+++.++...                         ++....+|.
T Consensus        16 ~l~fsp~~~~L--------------~s~s~Dg~v~iwd~~~~~~~~-------------------------~~~~~~~h~   56 (342)
T d1yfqa_          16 DIKIIPSKSLL--------------LITSWDGSLTVYKFDIQAKNV-------------------------DLLQSLRYK   56 (342)
T ss_dssp             EEEEEGGGTEE--------------EEEETTSEEEEEEEETTTTEE-------------------------EEEEEEECS
T ss_pred             EEEEeCCCCEE--------------EEEECCCeEEEEEccCCCcce-------------------------EEEEecCCC
Confidence            48899999999              455566778888775443211                         113445799


Q ss_pred             cceeEEEeec----ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCC-----CCc-----
Q 006825          340 PIVQELMRRQ----NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDER-----DTS-----  405 (630)
Q Consensus       340 ~~V~~Lafs~----~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~-----dt~-----  405 (630)
                      ..|.+|+|.|    .|++|+.|++++ +|+..++.........+......+.+.+++..+++++.+.     +..     
T Consensus        57 ~~V~~v~f~~~~~~~l~sg~~d~~v~-~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~  135 (342)
T d1yfqa_          57 HPLLCCNFIDNTDLQIYVGTVQGEIL-KVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDG  135 (342)
T ss_dssp             SCEEEEEEEESSSEEEEEEETTSCEE-EECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTB
T ss_pred             CCEEEEEEeCCCCCEEEEccccccee-eeecccccccccccccccccccccccccccccccccccccccceeeccccccc
Confidence            9999999987    699999999999 9999999888888755666666677778888888888776     110     


Q ss_pred             -----c----ccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEcc-CCCEEEEEe
Q 006825          406 -----S----EKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSL-DGRYLASAG  475 (630)
Q Consensus       406 -----s----~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSp-DG~~LASgS  475 (630)
                           .    .........+.......++.++.|+.|++|++...+...  .......+...+.++.+.+ ++..+++++
T Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  213 (342)
T d1yfqa_         136 VIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDN--GTIEESGLKYQIRDVALLPKEQEGYACSS  213 (342)
T ss_dssp             CEEEEESCSSSSSSCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTCC--CEEEECSCSSCEEEEEECSGGGCEEEEEE
T ss_pred             eeeecccccccccceeeeeeeeccCCceeeecCCCcEEEEecccCcccc--eeeeecccccceeeeEeecCCCCEEEeec
Confidence                 0    111222334455556668999999999999987664322  2233455666677766655 788999999


Q ss_pred             CCCcEEEEECcCCceeeee----------ecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCc
Q 006825          476 EDCVIHVWQVVESERKGEL----------LEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDH  545 (630)
Q Consensus       476 ~DgtIrVWDl~tg~~~~~l----------~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~  545 (630)
                      .|+.+.+|++.........          ......+|...+.+++|+|++.+|++|+.|+.|                  
T Consensus       214 ~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v------------------  275 (342)
T d1yfqa_         214 IDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGII------------------  275 (342)
T ss_dssp             TTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCE------------------
T ss_pred             CCCeEEEEEecCCcceeeccccceeeeeeeccCCCcccccceeEEecCCccEEEEECCCCEE------------------
Confidence            9999999998654322110          011235677789999999999999999999999                  


Q ss_pred             cccccEEEeC-CCCceEEeccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCCCcEEEEEe-cCCceEEEE
Q 006825          546 MVVPETVFAL-SDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYDISLV  614 (630)
Q Consensus       546 ~i~~~~Vwdl-sgk~l~tL~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg~~l~t~~-H~~~V~sVa  614 (630)
                           ++|++ +++.+.++..| ..+..++|+|+ ++|++++.|.++++|.....    ++. |...|..+-
T Consensus       276 -----~vWD~~~~~~l~~~~~~-~~~~~~~~s~~~~~l~~a~sdd~~~~~~~~~~----~~~~~~~~i~~~~  337 (342)
T d1yfqa_         276 -----SCWNLQTRKKIKNFAKF-NEDSVVKIACSDNILCLATSDDTFKTNAAIDQ----TIELNASSIYIIF  337 (342)
T ss_dssp             -----EEEETTTTEEEEECCCC-SSSEEEEEEECSSEEEEEEECTHHHHCSSSCT----TSCCCCCEEEEEE
T ss_pred             -----EEEECCCCcEEEEecCC-CCCEEEEEEeCCCEEEEEEcCCcEEEeeeeCC----CccCCCCeEEEEc
Confidence                 88888 67788888643 23445667777 89999999999999975332    233 666666554

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.88  E-value=6.7e-22  Score=195.55  Aligned_cols=223  Identities=13%  Similarity=0.132  Sum_probs=169.6

Q ss_pred             CceeEEecCCccCCEEEEEEcCCCCeEEeecCCC-----CCc-cccCCcceEEEeecCCCe-EEEecCCcEEEEEeCCCC
Q 006825          369 GGMKSKKKGSWFKSIRTVASSVTGHKERRSSDER-----DTS-SEKGGRRSSSATDDSQDV-SFHGQERVRVRQYGKSCK  441 (630)
Q Consensus       369 G~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~-----dt~-s~~gh~~~Vsa~~~s~d~-l~Sgs~Dg~VriWd~~~~  441 (630)
                      ++.+++++ ||.+.|++|+|+|    |++|+.|+     +.. ...+|...|.++.+.+.. +++++.|++|++|+....
T Consensus         3 ~~~i~~l~-gH~~~I~~l~~s~----l~sgs~Dg~v~~Wd~~~~~~~h~~~V~~~~~~~~~~~~s~s~D~~v~~w~~~~~   77 (287)
T d1pgua2           3 DEVLKTIS-GHNKGITALTVNP----LISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKH   77 (287)
T ss_dssp             EEEEEEEC-CCSSCEEEEETTT----TEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEEETTTEEEETTEEEE
T ss_pred             cceeEEEC-CCCCceEEEEECc----EEEEeCCCeEEEEECCCCCCCCCCCEEEEEecCCCeEEEEeecccccccccccc
Confidence            46788898 9999999999987    89999998     222 267899999999999877 899999999999986543


Q ss_pred             cccce-----------------------------eeeeEecccCcCEEEEEEccCCCEEEEEeCCC-cEEEEECcCCcee
Q 006825          442 DLTAL-----------------------------YKCQEIQAHNGSIWSIKFSLDGRYLASAGEDC-VIHVWQVVESERK  491 (630)
Q Consensus       442 el~~~-----------------------------~~v~tL~gHt~~V~sVaFSpDG~~LASgS~Dg-tIrVWDl~tg~~~  491 (630)
                      ++...                             ..+..+. +...  ..++++++..++.++.|+ .|++|++......
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~  154 (287)
T d1pgua2          78 EFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVR-LNSP--GSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVS  154 (287)
T ss_dssp             ECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSC--EEEEEECSSEEEEEETTTSCEEEEETTEEEEE
T ss_pred             ccccceeeeeeccCCceEEEeecccceeeeccceeeeeecc-ccce--eeeeeccCcceeeeccccceeeeeecccccee
Confidence            22110                             0111221 1122  345677888888888775 7999999766555


Q ss_pred             eeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeC-CCCceE-EeccCCCC
Q 006825          492 GELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPIC-SFQGHLDD  569 (630)
Q Consensus       492 ~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~-tL~GHs~~  569 (630)
                      ..+    ...|...+.+++|+|++.+|++++.|+.|                       ++|++ +++.+. .+.+|...
T Consensus       155 ~~~----~~~~~~~v~~~~~s~~~~~l~~g~~dg~i-----------------------~i~d~~~~~~~~~~~~~h~~~  207 (287)
T d1pgua2         155 FDL----KTPLRAKPSYISISPSETYIAAGDVMGKI-----------------------LLYDLQSREVKTSRWAFRTSK  207 (287)
T ss_dssp             EEC----SSCCSSCEEEEEECTTSSEEEEEETTSCE-----------------------EEEETTTTEEEECCSCCCSSC
T ss_pred             eee----eeccCCceeEEEeccCccccccccccccc-----------------------cceeecccccccccccccccc
Confidence            443    35677889999999999999999999999                       77777 333333 46789999


Q ss_pred             EEEEEEcCC-----------CeEEEEECCCcEEEEeCCC-CcEEEEEe-cCCceEEEE-cCCCcEEEEecce
Q 006825          570 VLDLSWSKS-----------QHLLSSSMDKTVRLWHLSS-KTCLKIFS-HSDYDISLV-DRLMLRFAYGAFL  627 (630)
Q Consensus       570 V~sLafSPd-----------~~LaSgS~DgtVrIWDl~t-g~~l~t~~-H~~~V~sVa-s~~~~~lAsgs~~  627 (630)
                      |++++|+|.           .+|+||+.|++|+|||+.+ ++++..+. |...|++|+ .++.. +++++.+
T Consensus       208 v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~~~-l~s~g~D  278 (287)
T d1pgua2         208 INAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPST-LVSSGAD  278 (287)
T ss_dssp             EEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETTE-EEEEETT
T ss_pred             cceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCeEEEEeCCCCCCeEEEEECCCCE-EEEEECC
Confidence            999999873           5899999999999999977 55677666 999999999 66654 4555443

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.82  E-value=3.2e-19  Score=179.25  Aligned_cols=199  Identities=10%  Similarity=-0.019  Sum_probs=156.9

Q ss_pred             EEeec----ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecC
Q 006825          345 LMRRQ----NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDS  420 (630)
Q Consensus       345 Lafs~----~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s  420 (630)
                      --|+|    .+|.++ ++.+. +||+.+|..++   .+|...|++++|+|||++|++++.+                   
T Consensus         8 ~~fSP~dG~~~a~~~-~g~v~-v~d~~~~~~~~---~~~~~~v~~~~~spDg~~l~~~~~~-------------------   63 (360)
T d1k32a3           8 EDFSPLDGDLIAFVS-RGQAF-IQDVSGTYVLK---VPEPLRIRYVRRGGDTKVAFIHGTR-------------------   63 (360)
T ss_dssp             EEEEECGGGCEEEEE-TTEEE-EECTTSSBEEE---CSCCSCEEEEEECSSSEEEEEEEET-------------------
T ss_pred             ccccCCCCCEEEEEE-CCeEE-EEECCCCcEEE---ccCCCCEEEEEECCCCCEEEEEEcC-------------------
Confidence            34777    456655 46899 99998887664   2799999999999999988753322                   


Q ss_pred             CCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeeccccc
Q 006825          421 QDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQED  500 (630)
Q Consensus       421 ~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~  500 (630)
                              .+..|++|+..+++      ++.+.+|...|.+++|+|||++|++++.|+.+++|++.+++....+     .
T Consensus        64 --------~g~~v~v~d~~~~~------~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~-----~  124 (360)
T d1k32a3          64 --------EGDFLGIYDYRTGK------AEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIE-----R  124 (360)
T ss_dssp             --------TEEEEEEEETTTCC------EEECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE-----E
T ss_pred             --------CCCEEEEEECCCCc------EEEeeCCCceEEeeeecccccccceeccccccccccccccceeeee-----e
Confidence                    12468999998874      4567899999999999999999999999999999999988876663     6


Q ss_pred             CcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeCCCCceEEeccCCCCEEEEEEcCC-C
Q 006825          501 GHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-Q  579 (630)
Q Consensus       501 gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL~GHs~~V~sLafSPd-~  579 (630)
                      .|...+..++|+|+|++|+.+..+.....+          ...+..+   .+|++.+.....+..|...+..++|+|+ +
T Consensus       125 ~~~~~~~~~~~spdg~~la~~~~~~~~~~~----------~~~~~~~---~v~d~~~~~~~~~~~~~~~~~~~~~spdg~  191 (360)
T d1k32a3         125 SREAMITDFTISDNSRFIAYGFPLKHGETD----------GYVMQAI---HVYDMEGRKIFAATTENSHDYAPAFDADSK  191 (360)
T ss_dssp             CSSSCCCCEEECTTSCEEEEEEEECSSTTC----------SCCEEEE---EEEETTTTEEEECSCSSSBEEEEEECTTSC
T ss_pred             cccccccchhhccceeeeeeecccccccee----------eccccce---eeeccccCceeeecccccccccccccCCCC
Confidence            777888899999999999876544432111          1111112   7899977677777788889999999999 9


Q ss_pred             eEEEEECCCcEEEEeCCCCc
Q 006825          580 HLLSSSMDKTVRLWHLSSKT  599 (630)
Q Consensus       580 ~LaSgS~DgtVrIWDl~tg~  599 (630)
                      +|++++.|+.+++|+.....
T Consensus       192 ~l~~~s~~~~~~~~d~~~~~  211 (360)
T d1k32a3         192 NLYYLSYRSLDPSPDRVVLN  211 (360)
T ss_dssp             EEEEEESCCCCCEECSSSSC
T ss_pred             EEEEEeCCCceEcccccccc
Confidence            99999999999999986543

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.81  E-value=8.1e-19  Score=185.85  Aligned_cols=291  Identities=9%  Similarity=-0.088  Sum_probs=184.3

Q ss_pred             CCcEEEEeeecCCCceeEEEEcCCCceEeeecceeeecCccceeEEEeec---ceEeecCCCccEecccCCCCceeEEec
Q 006825          300 NGKEFVVNEIQEDGTWKKVKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKKK  376 (630)
Q Consensus       300 dG~~~~v~e~~~dg~~~~l~dv~TG~~lt~eef~~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~lk  376 (630)
                      ....++|.+. .+|. .++||+.||+.+     .++.+|. .|..|+|+|   +|++++.|++++ +||+.|++.....+
T Consensus        30 ~~~~~~V~~~-~dg~-v~vwD~~t~~~~-----~~l~~g~-~~~~vafSPDGk~l~~~~~d~~v~-vwd~~t~~~~~~~~  100 (426)
T d1hzua2          30 LPNLFSVTLR-DAGQ-IALVDGDSKKIV-----KVIDTGY-AVHISRMSASGRYLLVIGRDARID-MIDLWAKEPTKVAE  100 (426)
T ss_dssp             GGGEEEEEET-TTTE-EEEEETTTCSEE-----EEEECCS-SEEEEEECTTSCEEEEEETTSEEE-EEETTSSSCEEEEE
T ss_pred             CCeEEEEEEc-CCCE-EEEEECCCCcEE-----EEEeCCC-CeeEEEECCCCCEEEEEeCCCCEE-EEEccCCceeEEEE
Confidence            3344444332 2343 679999999999     7777764 599999999   789999999999 99999998544322


Q ss_pred             ----CCccCCEEEEEEcCCCCeEEeec-CCC-------CCcc----ccCCcce-----------EEEeecCCCe---EEE
Q 006825          377 ----GSWFKSIRTVASSVTGHKERRSS-DER-------DTSS----EKGGRRS-----------SSATDDSQDV---SFH  426 (630)
Q Consensus       377 ----~gH~~~V~sVAfSpdG~~lasgS-~D~-------dt~s----~~gh~~~-----------Vsa~~~s~d~---l~S  426 (630)
                          .+|...+.+++|+|||++++.++ .+.       .+..    ..+|...           ...+..+++.   +++
T Consensus       101 i~~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~  180 (426)
T d1hzua2         101 IKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVN  180 (426)
T ss_dssp             EECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEE
T ss_pred             EeCCCCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEe
Confidence                26778888899999999875554 333       1110    1112111           1122222222   344


Q ss_pred             ecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEe-CCCcEEEEECcCCceeeeeecccccCcccc
Q 006825          427 GQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAG-EDCVIHVWQVVESERKGELLEKQEDGHLNM  505 (630)
Q Consensus       427 gs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS-~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~  505 (630)
                      ....+.+.+++......    ......+|...+..++|+|++++++.+. .+..+.+|+..+++........   .+...
T Consensus       181 ~~~~~~i~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~  253 (426)
T d1hzua2         181 VKETGKVLLVNYKDIDN----LTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVG---KTPHP  253 (426)
T ss_dssp             ETTTTEEEEEECSSSSS----CEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECS---SCCCC
T ss_pred             cCCCCeEEEEEeccccc----eeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccC---Ccccc
Confidence            44555666555543321    2234457888999999999999888776 5566889999988877654311   11111


Q ss_pred             eEEEEECCC--CCEE-EEeeCCCeeeeecccccccccccccCccccccEEEeC-CCCceEEeccCCCCEEEEEEcCC-Ce
Q 006825          506 LLLANGSPE--PTSL-SPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSWSKS-QH  580 (630)
Q Consensus       506 V~svafSpd--g~~l-asgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL~GHs~~V~sLafSPd-~~  580 (630)
                      ...+.+...  +..+ +....++.+..+....                ..|.. .++.+.++.+|...|..++|+|+ .+
T Consensus       254 ~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~----------------~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~  317 (426)
T d1hzua2         254 GRGANFVHPKYGPVWSTSHLGDGSISLIGTDP----------------KNHPQYAWKKVAELQGQGGGSLFIKTHPKSSH  317 (426)
T ss_dssp             SCCEEEEETTTEEEEEEECTTTCEEEEEECCT----------------TTCTTTBTSEEEEEECSSSCCCCEECCTTCSE
T ss_pred             cceeeeecCCCCceEEeccCCCceEEEeeccc----------------cccccccceEeEEEecCCCceeEEEcCCCCce
Confidence            111111111  1111 1222344442222111                00111 35778899999999999999999 88


Q ss_pred             EE-------EEECCCcEEEEeCCCCcEEEEEe----------cCCceEEEE-cCCCcEEE
Q 006825          581 LL-------SSSMDKTVRLWHLSSKTCLKIFS----------HSDYDISLV-DRLMLRFA  622 (630)
Q Consensus       581 La-------SgS~DgtVrIWDl~tg~~l~t~~----------H~~~V~sVa-s~~~~~lA  622 (630)
                      |+       +++.|++|+|||+.++++++++.          |...|..++ +|++..+.
T Consensus       318 l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~~~fSpDGk~i~  377 (426)
T d1hzua2         318 LYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVW  377 (426)
T ss_dssp             EEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCCEEEEEECSSSSEEE
T ss_pred             EEEeecCCCCcccCCEEEEEECCCCCcCeEEeccchhcccCCCCccEEEEEECCCCCEEE
Confidence            88       46678999999999998776651          566788888 89987663

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.81  E-value=4.1e-19  Score=188.13  Aligned_cols=256  Identities=9%  Similarity=0.029  Sum_probs=164.9

Q ss_pred             EEEEcCCCceEeeecceeeecCccceeEEEeec---c-eEeecCCCccEecccCCCCceeEEecCCccCCE---------
Q 006825          317 KVKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQ---N-VEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSI---------  383 (630)
Q Consensus       317 ~l~dv~TG~~lt~eef~~l~GHs~~V~~Lafs~---~-laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V---------  383 (630)
                      ++||+.|++.+...++....+|...+.+++|+|   + ++++..+++++ +||..++..+..+. +|...+         
T Consensus        86 ~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~-i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~  163 (426)
T d1hzua2          86 DMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFA-IMDGETLEPKQIVS-TRGMTVDTQTYHPEP  163 (426)
T ss_dssp             EEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEE-EEETTTCCEEEEEE-CCEECSSSCCEESCC
T ss_pred             EEEEccCCceeEEEEEeCCCCCcceEEeeeecCCCCEEEEeecCCCeEE-EEcCCccceeEEee-ccCCCccceeecCCC
Confidence            355555555554455566678888888889988   3 56667899999 99999999988877 555544         


Q ss_pred             --EEEEEcCCCCeEEeecCCCCC---------c----cccCCcceEEEeecCCCe---EEEecCCcEEEEEeCCCCcccc
Q 006825          384 --RTVASSVTGHKERRSSDERDT---------S----SEKGGRRSSSATDDSQDV---SFHGQERVRVRQYGKSCKDLTA  445 (630)
Q Consensus       384 --~sVAfSpdG~~lasgS~D~dt---------~----s~~gh~~~Vsa~~~s~d~---l~Sgs~Dg~VriWd~~~~el~~  445 (630)
                        ..+++++++.++.....+...         .    ...++...+..+.+.+++   +++......+.+|+...++...
T Consensus       164 ~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~  243 (426)
T d1hzua2         164 RVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSA  243 (426)
T ss_dssp             CEEEEEECSSSSEEEEEETTTTEEEEEECSSSSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEE
T ss_pred             ceeEEEECCCCCEEEEecCCCCeEEEEEeccccceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEE
Confidence              455666666655443333210         0    022345556677777776   5566678889999988775422


Q ss_pred             eeeeeEecccCcCEEEEEEccCCC---EEEEEeCCCcEEEEECcC-------CceeeeeecccccCcccceEEEEECCCC
Q 006825          446 LYKCQEIQAHNGSIWSIKFSLDGR---YLASAGEDCVIHVWQVVE-------SERKGELLEKQEDGHLNMLLLANGSPEP  515 (630)
Q Consensus       446 ~~~v~tL~gHt~~V~sVaFSpDG~---~LASgS~DgtIrVWDl~t-------g~~~~~l~~~~~~gh~~~V~svafSpdg  515 (630)
                      ..   ....+......+.|...+.   ..++.+.|+.+.+|+...       ++....     +.+|...+..++|+|++
T Consensus       244 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~-----l~g~~~~v~~v~~sPdg  315 (426)
T d1hzua2         244 LV---DVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAE-----LQGQGGGSLFIKTHPKS  315 (426)
T ss_dssp             EE---ECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEE-----EECSSSCCCCEECCTTC
T ss_pred             Ee---ccCCcccccceeeeecCCCCceEEeccCCCceEEEeeccccccccccceEeEE-----EecCCCceeEEEcCCCC
Confidence            11   1122222222333333222   112233455566665433       344444     37899999999999999


Q ss_pred             CEEEE-------eeCCCeeeeecccccccccccccCccccccEEEeC-CCCceEEe---------ccCCCCEEEEEEcCC
Q 006825          516 TSLSP-------KHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSF---------QGHLDDVLDLSWSKS  578 (630)
Q Consensus       516 ~~las-------gs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL---------~GHs~~V~sLafSPd  578 (630)
                      ++++.       ++.+++|                       ++|++ +++++.++         ..|...|..++||||
T Consensus       316 ~~l~v~~~~~~s~~~~~tv-----------------------~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~~~fSpD  372 (426)
T d1hzua2         316 SHLYVDTTFNPDARISQSV-----------------------AVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKR  372 (426)
T ss_dssp             SEEEECCTTCSSHHHHTCE-----------------------EEEETTCTTSCCEEECHHHHHCCCSSCCCEEEEEECSS
T ss_pred             ceEEEeecCCCCcccCCEE-----------------------EEEECCCCCcCeEEeccchhcccCCCCccEEEEEECCC
Confidence            99984       3445666                       77887 56655544         346677999999999


Q ss_pred             -CeE-EEE----ECCCcEEEEeCCCCcEEEEEe
Q 006825          579 -QHL-LSS----SMDKTVRLWHLSSKTCLKIFS  605 (630)
Q Consensus       579 -~~L-aSg----S~DgtVrIWDl~tg~~l~t~~  605 (630)
                       ++| +++    +.|++|+|||..|++.+..+.
T Consensus       373 Gk~i~vs~~~~~~~~~~i~v~D~~T~k~~~~i~  405 (426)
T d1hzua2         373 GDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVK  405 (426)
T ss_dssp             SSEEEEEECCCTTSCCEEEEEETTTTEEEEEEC
T ss_pred             CCEEEEEEecCCCCCCeEEEEECCCCeEEEEEC
Confidence             655 443    358999999999999988886

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.80  E-value=7.1e-17  Score=158.08  Aligned_cols=246  Identities=13%  Similarity=0.025  Sum_probs=180.1

Q ss_pred             eeEEEEcCCCceEeeecceeeecCccceeEEEeec---ce-EeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcC
Q 006825          315 WKKVKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQ---NV-EEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSV  390 (630)
Q Consensus       315 ~~~l~dv~TG~~lt~eef~~l~GHs~~V~~Lafs~---~l-aSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSp  390 (630)
                      ...+||+.|++.+     .++... ..+..|+|+|   +| ++++.+++|+ +||+.+++.+.++. .|. .+..++|++
T Consensus        13 ~v~v~D~~t~~~~-----~~i~~g-~~p~~va~spdG~~l~v~~~~~~~i~-v~d~~t~~~~~~~~-~~~-~~~~~~~~~   83 (301)
T d1l0qa2          13 NISVIDVTSNKVT-----ATIPVG-SNPMGAVISPDGTKVYVANAHSNDVS-IIDTATNNVIATVP-AGS-SPQGVAVSP   83 (301)
T ss_dssp             EEEEEETTTTEEE-----EEEECS-SSEEEEEECTTSSEEEEEEGGGTEEE-EEETTTTEEEEEEE-CSS-SEEEEEECT
T ss_pred             EEEEEECCCCeEE-----EEEECC-CCceEEEEeCCCCEEEEEECCCCEEE-EEECCCCceeeeee-ccc-ccccccccc
Confidence            3678899998877     444322 3467899998   34 7888999999 99999999999988 554 468899999


Q ss_pred             CCCeEEee-cCCC-------CCcc---ccCCcceEEEeecCCCe---EEEecCCcEEEEEeCCCCcccceeeeeEecccC
Q 006825          391 TGHKERRS-SDER-------DTSS---EKGGRRSSSATDDSQDV---SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHN  456 (630)
Q Consensus       391 dG~~lasg-S~D~-------dt~s---~~gh~~~Vsa~~~s~d~---l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt  456 (630)
                      +|+++... ..+.       .+..   ...+.....++.+++++   ++++..+..+.+|+..+..     .+..+. +.
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~-~~  157 (301)
T d1l0qa2          84 DGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKA-----VINTVS-VG  157 (301)
T ss_dssp             TSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTE-----EEEEEE-CC
T ss_pred             ccccccccccccceeeecccccceeeeeccccccceEEEeecCCCeeeeeeccccceeeeeccccc-----eeeecc-cC
Confidence            99965544 4443       1111   22233445566777766   5678889999999987764     234444 44


Q ss_pred             cCEEEEEEccCCCEEEEEeCC-CcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCC---Ceeeeecc
Q 006825          457 GSIWSIKFSLDGRYLASAGED-CVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLD---NHLEKKRR  532 (630)
Q Consensus       457 ~~V~sVaFSpDG~~LASgS~D-gtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~D---g~I~i~~~  532 (630)
                      ..+..++|+|++++++++..+ +.+.+|+.........+      .....+..+++++++..++.+..+   +.|     
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~v~~~~~~~~~v-----  226 (301)
T d1l0qa2         158 RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTV------KVEAAPSGIAVNPEGTKAYVTNVDKYFNTV-----  226 (301)
T ss_dssp             SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE------ECSSEEEEEEECTTSSEEEEEEECSSCCEE-----
T ss_pred             CCceEEEeeccccceeeecccccccccccccceeeeecc------cccCCcceeeccccccccccccccceeeee-----
Confidence            568899999999988888766 56677777666555442      223456788999999988766444   345     


Q ss_pred             cccccccccccCccccccEEEeC-CCCceEEeccCCCCEEEEEEcCC-CeE-EEEECCCcEEEEeCCCCcEEEEEe
Q 006825          533 GRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSWSKS-QHL-LSSSMDKTVRLWHLSSKTCLKIFS  605 (630)
Q Consensus       533 ~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL~GHs~~V~sLafSPd-~~L-aSgS~DgtVrIWDl~tg~~l~t~~  605 (630)
                                        .+|++ +++.+.++..+ ..+.+++|+|| ++| ++++.|++|+|||+.+++++.++.
T Consensus       227 ------------------~v~D~~t~~~~~~~~~~-~~~~~va~spdg~~l~va~~~~~~i~v~D~~t~~~~~~~~  283 (301)
T d1l0qa2         227 ------------------SMIDTGTNKITARIPVG-PDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITATMA  283 (301)
T ss_dssp             ------------------EEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred             ------------------eeeecCCCeEEEEEcCC-CCEEEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEEEe
Confidence                              78887 67777777644 46899999999 765 688889999999999999999987

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.79  E-value=2.5e-18  Score=184.16  Aligned_cols=284  Identities=8%  Similarity=-0.059  Sum_probs=194.0

Q ss_pred             CceeecCCCCcccCCCccccccCCCCCcccccccEEEEECCCC---------------------------cEEEEeeecC
Q 006825          259 DSMSINGNGNYIGNSGEVVEDFDGNGTAGVAEQGCLIKNLDNG---------------------------KEFVVNEIQE  311 (630)
Q Consensus       259 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~LddG---------------------------~~~~v~e~~~  311 (630)
                      .+++|||||+|+...              .+++.++||+++.+                           +.+++...  
T Consensus        65 ~~v~fSpDG~~l~~~--------------s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~SpDG~~l~vs~~--  128 (432)
T d1qksa2          65 HISRLSASGRYLFVI--------------GRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAY--  128 (432)
T ss_dssp             EEEEECTTSCEEEEE--------------ETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEE--
T ss_pred             eEEEECCCCCEEEEE--------------cCCCCEEEEEeeCCCceEEEEEecCCCCCCeEEecccCCCCCEEEEEcC--
Confidence            358999999999333              34455666665544                           43333221  


Q ss_pred             CCceeEEEEcCCCceEeeecc------eeeecCccceeEEEeec----ceEeecCCCccEecccCCCCceeEEecCCccC
Q 006825          312 DGTWKKVKEVGTGRQLTIEEF------EMCVGHSPIVQELMRRQ----NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFK  381 (630)
Q Consensus       312 dg~~~~l~dv~TG~~lt~eef------~~l~GHs~~V~~Lafs~----~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~  381 (630)
                      +....++||..|++.+.....      ..-.++.+.+..++++|    .+++.+.++++. +||..+++.+......+..
T Consensus       129 ~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~-~~d~~~~~~~~~~~i~~g~  207 (432)
T d1qksa2         129 WPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKIL-LVDYTDLNNLKTTEISAER  207 (432)
T ss_dssp             ETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEE-EEETTCSSEEEEEEEECCS
T ss_pred             CCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEE-EEEccCCCcceEEEEcccC
Confidence            122467899999998822111      11223445566778887    467888889999 9999998877665546777


Q ss_pred             CEEEEEEcCCCCeEEeecCCCC-----------------CccccCCcceEEEeecCCCe---EEEecCCcEEEEEeCCCC
Q 006825          382 SIRTVASSVTGHKERRSSDERD-----------------TSSEKGGRRSSSATDDSQDV---SFHGQERVRVRQYGKSCK  441 (630)
Q Consensus       382 ~V~sVAfSpdG~~lasgS~D~d-----------------t~s~~gh~~~Vsa~~~s~d~---l~Sgs~Dg~VriWd~~~~  441 (630)
                      .+..++|+|||++++.++.+..                 ++....|............+   ......+++|.+|+....
T Consensus       208 ~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~lg~~~v~~~~~~~~  287 (432)
T d1qksa2         208 FLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPE  287 (432)
T ss_dssp             SEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTT
T ss_pred             ccccceECCCCCEEEEeccccceEEEeecccceEEEEeccCccccccCcccceecCCCCceecccccCCceEEecccccc
Confidence            8899999999998877765541                 11122233333333333443   233345889999987544


Q ss_pred             cccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEe
Q 006825          442 DLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPK  521 (630)
Q Consensus       442 el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasg  521 (630)
                      .         +..|...|....|+|++..+++++.|.++++|...+..           .|......+++ ||++.++++
T Consensus       288 ~---------~~~~~~~v~~~~~~~~g~~~~~~s~p~~~~lw~~~~~~-----------~~~~~~~sv~v-pDg~~la~~  346 (432)
T d1qksa2         288 G---------HPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLN-----------PEAEISGSVAV-FDIKAMTGD  346 (432)
T ss_dssp             T---------CTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTC-----------SSHHHHTCEEE-EEGGGCCCS
T ss_pred             c---------ccccccEEEEEEEcCCCCeEEEEecCCccceeecccCC-----------CCCCeeeEEEE-Eechhhccc
Confidence            2         45688889999999999999999999999999865432           23333334554 899999999


Q ss_pred             eCCCeeeeecccccccccccccCccccccEEEeC-CCCceEEeccCCCCEEEEEEcCC-CeEEEEE-----CCCcEEEEe
Q 006825          522 HLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSWSKS-QHLLSSS-----MDKTVRLWH  594 (630)
Q Consensus       522 s~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL~GHs~~V~sLafSPd-~~LaSgS-----~DgtVrIWD  594 (630)
                      +.|+.+                       ++|++ ++.   .+..|...|.+++|+|| ++|+.+.     .|+.|+|||
T Consensus       347 s~d~~~-----------------------k~w~~~~~~---~l~~~~~~v~~~~fS~DG~~v~~S~~~~~~~~g~i~i~D  400 (432)
T d1qksa2         347 GSDPEF-----------------------KTLPIAEWA---GITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVD  400 (432)
T ss_dssp             SSCCCE-----------------------EEECHHHHH---TCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEE
T ss_pred             ccCCce-----------------------Eeccccccc---ccCCCCCcEEEeEECCCCCEEEEEEecCCCCCCcEEEEE
Confidence            999999                       66665 222   23357778999999999 6675443     468999999


Q ss_pred             CCCCcEEEEEec
Q 006825          595 LSSKTCLKIFSH  606 (630)
Q Consensus       595 l~tg~~l~t~~H  606 (630)
                      ..|+++...++.
T Consensus       401 ~~T~k~~~~i~~  412 (432)
T d1qksa2         401 DKTLELKHVIKD  412 (432)
T ss_dssp             TTTTEEEEEECC
T ss_pred             CCCceEEeEecC
Confidence            999999888864

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.78  E-value=1.8e-16  Score=161.67  Aligned_cols=272  Identities=9%  Similarity=-0.109  Sum_probs=169.9

Q ss_pred             eEEEEcCCCceEeeecceeeecCccceeEEEeec---ceEe----------ecCCCccEecccCCCCceeEEecCCccCC
Q 006825          316 KKVKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQ---NVEE----------GNKDSFDLNNNGSSGGGMKSKKKGSWFKS  382 (630)
Q Consensus       316 ~~l~dv~TG~~lt~eef~~l~GHs~~V~~Lafs~---~laS----------gS~D~tvr~vWD~~tG~~~~~lk~gH~~~  382 (630)
                      ..++|..||+.+     .++.++...  .++|+|   .|+.          ++.+++++ +||..+++.+..+. .+...
T Consensus        49 v~v~D~~tg~~~-----~~~~~~~~~--~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~-v~D~~t~~~~~~~~-~~~~~  119 (373)
T d2madh_          49 QWVLDAGSGSIL-----GHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVE-VFDPVTFLPIADIE-LPDAP  119 (373)
T ss_pred             EEEEECCCCCEE-----EEEeCCCCc--cEEEcCCCCEEEEEeecCCcccccccceEEE-EEECCCCcEEEEEe-cCCcc
Confidence            345566677766     444444432  577887   3433          35578899 99999999988877 44443


Q ss_pred             E-------EEEEEcCCCCeEEeecCCC---------CCccccCCcceEEEeecCCCe---EEEecCCcEEEEEeCCCCcc
Q 006825          383 I-------RTVASSVTGHKERRSSDER---------DTSSEKGGRRSSSATDDSQDV---SFHGQERVRVRQYGKSCKDL  443 (630)
Q Consensus       383 V-------~sVAfSpdG~~lasgS~D~---------dt~s~~gh~~~Vsa~~~s~d~---l~Sgs~Dg~VriWd~~~~el  443 (630)
                      .       ..++|+++|+++.....+.         .......+.....+..+++++   +++...|+++.+|+....+.
T Consensus       120 ~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~  199 (373)
T d2madh_         120 RFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQLLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAA  199 (373)
T ss_pred             eeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEEEEeccceeEEEecCCCcEEEEEcCCCeEEEEEcCCcee
Confidence            3       4579999999766554332         122233333444455555555   67899999999999887654


Q ss_pred             cceeeeeE-ecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceE----------EEEEC
Q 006825          444 TALYKCQE-IQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLL----------LANGS  512 (630)
Q Consensus       444 ~~~~~v~t-L~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~----------svafS  512 (630)
                      ........ ..++......+.+.+++.++ ..+.++++++|+..+........   ...+.....          .++++
T Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~  275 (373)
T d2madh_         200 GAGLVGAMLTAAQNLLTQPAQANKSGRIV-WPVYSGKILQADISAAGATNKAP---IDALSGGRKADTWRPGGWQQVAYL  275 (373)
T ss_pred             eEEEeeeccccCccceeeeEEECCCceEE-EecCCceEEEEEcCCCeEEEEEe---eccccCcEEeeeeccCcceeeEEe
Confidence            32211111 11223334556667666554 56788999999998765432211   122222333          34455


Q ss_pred             CCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeC-CCCceEEeccCCCCEEEEEEcCC-C--eEEEEECCC
Q 006825          513 PEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSWSKS-Q--HLLSSSMDK  588 (630)
Q Consensus       513 pdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL~GHs~~V~sLafSPd-~--~LaSgS~Dg  588 (630)
                      +++..++....++..          .........+   .+|+. +++.+..+. +...+..++|+|| +  ++++++.|+
T Consensus       276 ~d~~~~~~~~~~~~~----------~~~~~~~~~v---~~~d~~t~~~~~~~~-~~~~~~~~a~spDG~~~l~vt~~~d~  341 (373)
T d2madh_         276 KSSDGIYLLTSEQSA----------WKLHAAAKEV---TSVTGLVGQTSSQIS-LGHDVDAISVAQDGGPDLYALSAGTE  341 (373)
T ss_pred             cCCCeEEEecCCCce----------EEeecCCCeE---EEEECCCCcEEEEec-CCCCeeEEEECCCCCEEEEEEeCCCC
Confidence            555444443333221          1111222223   67787 777777765 6678999999999 5  357899999


Q ss_pred             cEEEEeCCCCcEEEEEe-cCCceEEEE
Q 006825          589 TVRLWHLSSKTCLKIFS-HSDYDISLV  614 (630)
Q Consensus       589 tVrIWDl~tg~~l~t~~-H~~~V~sVa  614 (630)
                      +|+|||+.+++.++++. +....+.|+
T Consensus       342 ~v~v~D~~tg~~~~~~~~~g~~P~~l~  368 (373)
T d2madh_         342 VLHIYDAGAGDQDQSTVELGSGPQVLS  368 (373)
T ss_pred             eEEEEECCCCCEEEEECCCCCCCcEEE
Confidence            99999999999999998 777777766

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.75  E-value=5.2e-17  Score=161.00  Aligned_cols=233  Identities=8%  Similarity=-0.042  Sum_probs=169.0

Q ss_pred             ceEeecCCCccEecccCCCCceeEEecCC-ccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEec
Q 006825          350 NVEEGNKDSFDLNNNGSSGGGMKSKKKGS-WFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQ  428 (630)
Q Consensus       350 ~laSgS~D~tvr~vWD~~tG~~~~~lk~g-H~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs  428 (630)
                      ++++++.|++|+ +||+++++.+.++... +...+.+++|+|||+++.                            +++.
T Consensus         3 ~~vt~~~d~~v~-v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~----------------------------v~~~   53 (337)
T d1pbyb_           3 YILAPARPDKLV-VIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAY----------------------------ATVN   53 (337)
T ss_dssp             EEEEEETTTEEE-EEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEE----------------------------EEET
T ss_pred             EEEEEcCCCEEE-EEECCCCeEEEEEECCCCCCCccEEEECCCCCEEE----------------------------EEEC
Confidence            588999999999 9999999999988743 456688999999998773                            4566


Q ss_pred             CCcEEEEEeCCCCcccceeeeeEeccc-----CcCEEEEEEccCCCEEEEEe------------CCCcEEEEECcCCcee
Q 006825          429 ERVRVRQYGKSCKDLTALYKCQEIQAH-----NGSIWSIKFSLDGRYLASAG------------EDCVIHVWQVVESERK  491 (630)
Q Consensus       429 ~Dg~VriWd~~~~el~~~~~v~tL~gH-----t~~V~sVaFSpDG~~LASgS------------~DgtIrVWDl~tg~~~  491 (630)
                      .++.|++||+.++++     +..+..+     ...+..++|+||+++|+.+.            .+..+.+||..+++..
T Consensus        54 ~~~~v~v~D~~t~~~-----~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  128 (337)
T d1pbyb_          54 KSESLVKIDLVTGET-----LGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRR  128 (337)
T ss_dssp             TTTEEEEEETTTCCE-----EEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEE
T ss_pred             CCCeEEEEECCCCcE-----EEEEecCCCcccccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEE
Confidence            788999999988764     3334333     34566899999999998886            4678999999998877


Q ss_pred             eeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeeccccccccc-----------ccccCccc-------------
Q 006825          492 GELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRK-----------SLSLDHMV-------------  547 (630)
Q Consensus       492 ~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~-----------s~s~d~~i-------------  547 (630)
                      ..+.      +...+..++|+|+|+++++++.+..+  |+........           .+..+...             
T Consensus       129 ~~~~------~~~~~~~~~~s~dg~~l~~~~~~~~~--~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (337)
T d1pbyb_         129 KAFE------APRQITMLAWARDGSKLYGLGRDLHV--MDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMAT  200 (337)
T ss_dssp             EEEE------CCSSCCCEEECTTSSCEEEESSSEEE--EETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEE
T ss_pred             Eecc------ccCCceEEEEcCCCCEEEEEcCCcce--eeeecCcEEEEeecCCccccceecCCcceeeccccccceeee
Confidence            7642      23456788999999999988766433  4322211100           00000000             


Q ss_pred             ------------------cccEEEeC-CCCceE-EeccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCCCcEEEEEec
Q 006825          548 ------------------VPETVFAL-SDKPIC-SFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFSH  606 (630)
Q Consensus       548 ------------------~~~~Vwdl-sgk~l~-tL~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg~~l~t~~H  606 (630)
                                        ....+|+. +++... .+..|...+..++++|+ .+++.+  |++|++||+.+++++..+.+
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~v~d~~~~~~~~~~~~  278 (337)
T d1pbyb_         201 PFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPL  278 (337)
T ss_dssp             EEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEEC
T ss_pred             eeeeeeeccceeeecccCccEEEEEcCCCcEEEEEecCCCcceEEEEecccceEEEEc--cccEEEEECCCCcEEEEEcC
Confidence                              01134555 344332 35567788889999999 666655  58999999999999999998


Q ss_pred             CCceEEEE-cCCCcEEEEecc
Q 006825          607 SDYDISLV-DRLMLRFAYGAF  626 (630)
Q Consensus       607 ~~~V~sVa-s~~~~~lAsgs~  626 (630)
                      ...+.+++ ++++..+++++.
T Consensus       279 ~~~~~~~~~s~dG~~l~v~~~  299 (337)
T d1pbyb_         279 PHSYYSVNVSTDGSTVWLGGA  299 (337)
T ss_dssp             SSCCCEEEECTTSCEEEEESB
T ss_pred             CCCEEEEEECCCCCEEEEEeC
Confidence            88899999 999998887754

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.74  E-value=1.4e-16  Score=157.92  Aligned_cols=268  Identities=10%  Similarity=0.018  Sum_probs=167.3

Q ss_pred             EEEEeeecCCCceeEEEEcCCCceEeeecceeeec--CccceeEEEeec---c-eEeecCCCccEecccCCCCceeEEec
Q 006825          303 EFVVNEIQEDGTWKKVKEVGTGRQLTIEEFEMCVG--HSPIVQELMRRQ---N-VEEGNKDSFDLNNNGSSGGGMKSKKK  376 (630)
Q Consensus       303 ~~~v~e~~~dg~~~~l~dv~TG~~lt~eef~~l~G--Hs~~V~~Lafs~---~-laSgS~D~tvr~vWD~~tG~~~~~lk  376 (630)
                      +|++... .|+. ..+||+.+++.+     .++..  +...+..++|+|   + +++++.+++|. +||+.+|+.+.++.
T Consensus         2 ~~~vt~~-~d~~-v~v~D~~s~~~~-----~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~-v~D~~t~~~~~~~~   73 (337)
T d1pbyb_           2 DYILAPA-RPDK-LVVIDTEKMAVD-----KVITIADAGPTPMVPMVAPGGRIAYATVNKSESLV-KIDLVTGETLGRID   73 (337)
T ss_dssp             EEEEEEE-TTTE-EEEEETTTTEEE-----EEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEE-EEETTTCCEEEEEE
T ss_pred             eEEEEEc-CCCE-EEEEECCCCeEE-----EEEECCCCCCCccEEEECCCCCEEEEEECCCCeEE-EEECCCCcEEEEEe
Confidence            4444322 3433 568888888877     55533  445678999998   3 47888999999 99999999998887


Q ss_pred             CCc-----cCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeE
Q 006825          377 GSW-----FKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQE  451 (630)
Q Consensus       377 ~gH-----~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~t  451 (630)
                       .+     ...+..++|+|+|++++.+..+.                 ..........+..+.+||..+++.     ...
T Consensus        74 -~~~~~~~~~~~~~v~~s~dg~~l~~~~~~~-----------------~~~~~~~~~~~~~~~~~d~~~~~~-----~~~  130 (337)
T d1pbyb_          74 -LSTPEERVKSLFGAALSPDGKTLAIYESPV-----------------RLELTHFEVQPTRVALYDAETLSR-----RKA  130 (337)
T ss_dssp             -CCBTTEEEECTTCEEECTTSSEEEEEEEEE-----------------EECSSCEEECCCEEEEEETTTTEE-----EEE
T ss_pred             -cCCCcccccceeeEEEcCCCcEEEEeecCC-----------------cceeeeccccccceeeccccCCeE-----EEe
Confidence             33     33455799999999887653321                 001122344577899999987752     444


Q ss_pred             ecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccC------------------cccceEEEEECC
Q 006825          452 IQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDG------------------HLNMLLLANGSP  513 (630)
Q Consensus       452 L~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~g------------------h~~~V~svafSp  513 (630)
                      +. +...+..++|+|||+++++++.|  +.+||+.+++....+.......                  +...+.......
T Consensus       131 ~~-~~~~~~~~~~s~dg~~l~~~~~~--~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (337)
T d1pbyb_         131 FE-APRQITMLAWARDGSKLYGLGRD--LHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARK  207 (337)
T ss_dssp             EE-CCSSCCCEEECTTSSCEEEESSS--EEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBT
T ss_pred             cc-ccCCceEEEEcCCCCEEEEEcCC--cceeeeecCcEEEEeecCCccccceecCCcceeeccccccceeeeeeeeeee
Confidence            54 44568899999999999998754  7889998887665542111000                  000000111111


Q ss_pred             CCCEEEEeeCCCeeeeecccccc-cc------------cccccCccc-----cccEEEeC-CCCceEEeccCCCCEEEEE
Q 006825          514 EPTSLSPKHLDNHLEKKRRGRSI-NR------------KSLSLDHMV-----VPETVFAL-SDKPICSFQGHLDDVLDLS  574 (630)
Q Consensus       514 dg~~lasgs~Dg~I~i~~~~~~~-~~------------~s~s~d~~i-----~~~~Vwdl-sgk~l~tL~GHs~~V~sLa  574 (630)
                      +...+.....+..+.+++..... ..            ..+..+...     ....+|++ +++.+..+. +...+.+++
T Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~  286 (337)
T d1pbyb_         208 DIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGAYNVLESFDLEKNASIKRVP-LPHSYYSVN  286 (337)
T ss_dssp             TSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEEESEEEEEETTTTEEEEEEE-CSSCCCEEE
T ss_pred             ccceeeecccCccEEEEEcCCCcEEEEEecCCCcceEEEEecccceEEEEccccEEEEECCCCcEEEEEc-CCCCEEEEE
Confidence            11111111112222223222110 00            001111111     01278998 667777664 667889999


Q ss_pred             EcCC-CeEEEEECCCcEEEEeCCCCcEEEEEe
Q 006825          575 WSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS  605 (630)
Q Consensus       575 fSPd-~~LaSgS~DgtVrIWDl~tg~~l~t~~  605 (630)
                      |+|| ++|++++.|++|+|||+.+++.+.+++
T Consensus       287 ~s~dG~~l~v~~~~~~i~v~D~~t~~~v~~i~  318 (337)
T d1pbyb_         287 VSTDGSTVWLGGALGDLAAYDAETLEKKGQVD  318 (337)
T ss_dssp             ECTTSCEEEEESBSSEEEEEETTTCCEEEEEE
T ss_pred             ECCCCCEEEEEeCCCcEEEEECCCCcEEEEEE
Confidence            9999 899999999999999999999999987

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.74  E-value=1.8e-15  Score=147.95  Aligned_cols=237  Identities=9%  Similarity=0.001  Sum_probs=172.0

Q ss_pred             eEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeE-EeecCCC-----CC--cc----ccCCcceEEEee
Q 006825          351 VEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKE-RRSSDER-----DT--SS----EKGGRRSSSATD  418 (630)
Q Consensus       351 laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~l-asgS~D~-----dt--~s----~~gh~~~Vsa~~  418 (630)
                      -++++.|++|. +||+++++.++++..+  .....++|+|||+++ ++++.+.     +.  ..    ...+.. +..+.
T Consensus         5 yV~~~~~~~v~-v~D~~t~~~~~~i~~g--~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~~-~~~~~   80 (301)
T d1l0qa2           5 YIANSESDNIS-VIDVTSNKVTATIPVG--SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSS-PQGVA   80 (301)
T ss_dssp             EEEETTTTEEE-EEETTTTEEEEEEECS--SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSS-EEEEE
T ss_pred             EEEECCCCEEE-EEECCCCeEEEEEECC--CCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeecccc-ccccc
Confidence            36788999999 9999999999988743  457899999999987 5665554     21  11    233332 34555


Q ss_pred             cCCCe---EEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEE-EEeCCCcEEEEECcCCceeeee
Q 006825          419 DSQDV---SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLA-SAGEDCVIHVWQVVESERKGEL  494 (630)
Q Consensus       419 ~s~d~---l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LA-SgS~DgtIrVWDl~tg~~~~~l  494 (630)
                      +.+++   ++++..+..+++|+..+++     ....+. +...+.+++|+|+|+.++ ++..++.+.+|+..+......+
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~-~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (301)
T d1l0qa2          81 VSPDGKQVYVTNMASSTLSVIDTTSNT-----VAGTVK-TGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTV  154 (301)
T ss_dssp             ECTTSSEEEEEETTTTEEEEEETTTTE-----EEEEEE-CSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             cccccccccccccccceeeecccccce-----eeeecc-ccccceEEEeecCCCeeeeeeccccceeeeeccccceeeec
Confidence            66665   6778889999999987764     344454 445678999999999765 5667889999999998877764


Q ss_pred             ecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeCCCCceEEeccCCCCEEEEE
Q 006825          495 LEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLS  574 (630)
Q Consensus       495 ~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL~GHs~~V~sLa  574 (630)
                            .+...+..++++|++..++++..+....                      .+|......+.....+...+..++
T Consensus       155 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~  206 (301)
T d1l0qa2         155 ------SVGRSPKGIAVTPDGTKVYVANFDSMSI----------------------SVIDTVTNSVIDTVKVEAAPSGIA  206 (301)
T ss_dssp             ------ECCSSEEEEEECTTSSEEEEEETTTTEE----------------------EEEETTTTEEEEEEECSSEEEEEE
T ss_pred             ------ccCCCceEEEeeccccceeeeccccccc----------------------ccccccceeeeecccccCCcceee
Confidence                  2334577899999999888877664331                      455554433333333445678899


Q ss_pred             EcCC-CeEEEEE---CCCcEEEEeCCCCcEEEEEecCCceEEEE-cCCCcEE-EEec
Q 006825          575 WSKS-QHLLSSS---MDKTVRLWHLSSKTCLKIFSHSDYDISLV-DRLMLRF-AYGA  625 (630)
Q Consensus       575 fSPd-~~LaSgS---~DgtVrIWDl~tg~~l~t~~H~~~V~sVa-s~~~~~l-Asgs  625 (630)
                      |+++ ..++.+.   .+++|++||+.+++++..+.+...+++|+ +|++..+ ++++
T Consensus       207 ~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~va~spdg~~l~va~~  263 (301)
T d1l0qa2         207 VNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGPDPAGIAVTPDGKKVYVALS  263 (301)
T ss_dssp             ECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEET
T ss_pred             ccccccccccccccceeeeeeeeecCCCeEEEEEcCCCCEEEEEEeCCCCEEEEEEC
Confidence            9998 6655443   35789999999999999999777889999 8888765 4544

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.72  E-value=3e-16  Score=167.78  Aligned_cols=200  Identities=9%  Similarity=-0.120  Sum_probs=153.5

Q ss_pred             eEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCC
Q 006825          351 VEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQER  430 (630)
Q Consensus       351 laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~D  430 (630)
                      +++.+.|++++ |||.+|++.+.++.. | ..+..++|||||++++                             +++.|
T Consensus        35 ~v~~~d~g~v~-v~D~~t~~v~~~~~~-g-~~~~~v~fSpDG~~l~-----------------------------~~s~d   82 (432)
T d1qksa2          35 SVTLRDAGQIA-LIDGSTYEIKTVLDT-G-YAVHISRLSASGRYLF-----------------------------VIGRD   82 (432)
T ss_dssp             EEEETTTTEEE-EEETTTCCEEEEEEC-S-SCEEEEEECTTSCEEE-----------------------------EEETT
T ss_pred             EEEEcCCCEEE-EEECCCCcEEEEEeC-C-CCeeEEEECCCCCEEE-----------------------------EEcCC
Confidence            58999999999 999999999999984 4 3699999999999885                             44567


Q ss_pred             cEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEE-EEEeCCCcEEEEECcCCceeeeeeccc------ccCcc
Q 006825          431 VRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYL-ASAGEDCVIHVWQVVESERKGELLEKQ------EDGHL  503 (630)
Q Consensus       431 g~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~L-ASgS~DgtIrVWDl~tg~~~~~l~~~~------~~gh~  503 (630)
                      ++|++||+.+.+......+....+|.+.+.+++|+|||++| ++++.+++|+|||..+++.+..+....      ...+.
T Consensus        83 g~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~  162 (432)
T d1qksa2          83 GKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPE  162 (432)
T ss_dssp             SEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESC
T ss_pred             CCEEEEEeeCCCceEEEEEecCCCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCC
Confidence            89999999887655444556667899999999999999976 788899999999999998877653111      11234


Q ss_pred             cceEEEEECCCCCEEEE-eeCCCeeeeecccccccccccccCccccccEEEeC-CCCceEEe-ccCCCCEEEEEEcCC-C
Q 006825          504 NMLLLANGSPEPTSLSP-KHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSF-QGHLDDVLDLSWSKS-Q  579 (630)
Q Consensus       504 ~~V~svafSpdg~~las-gs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL-~GHs~~V~sLafSPd-~  579 (630)
                      .....+.++|++..++. ...++.|                       .+|+. +.+.+... ..+...+..++|+|+ +
T Consensus       163 ~~~~~v~~s~dg~~~~vs~~~~~~i-----------------------~~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~  219 (432)
T d1qksa2         163 PRVAAILASHYRPEFIVNVKETGKI-----------------------LLVDYTDLNNLKTTEISAERFLHDGGLDGSHR  219 (432)
T ss_dssp             CCEEEEEECSSSSEEEEEETTTTEE-----------------------EEEETTCSSEEEEEEEECCSSEEEEEECTTSC
T ss_pred             CceeEEEECCCCCEEEEEEccCCeE-----------------------EEEEccCCCcceEEEEcccCccccceECCCCC
Confidence            45667889999877654 4455666                       56665 33433322 235567899999999 7


Q ss_pred             eEEEEEC-CCcEEEEeCCCCcEEEEEe
Q 006825          580 HLLSSSM-DKTVRLWHLSSKTCLKIFS  605 (630)
Q Consensus       580 ~LaSgS~-DgtVrIWDl~tg~~l~t~~  605 (630)
                      ++++++. ++.|.+||..+++.+..+.
T Consensus       220 ~~~va~~~~~~v~v~d~~~~~~~~~~~  246 (432)
T d1qksa2         220 YFITAANARNKLVVIDTKEGKLVAIED  246 (432)
T ss_dssp             EEEEEEGGGTEEEEEETTTTEEEEEEE
T ss_pred             EEEEeccccceEEEeecccceEEEEec
Confidence            7766664 6789999999999888775

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.71  E-value=2.5e-16  Score=156.54  Aligned_cols=245  Identities=12%  Similarity=-0.014  Sum_probs=157.4

Q ss_pred             EEEcCCCceEeeecceeee-cCccceeEEEeec----ceEeecCCCccEecccCCCCceeEEecCC-----ccCCEEEEE
Q 006825          318 VKEVGTGRQLTIEEFEMCV-GHSPIVQELMRRQ----NVEEGNKDSFDLNNNGSSGGGMKSKKKGS-----WFKSIRTVA  387 (630)
Q Consensus       318 l~dv~TG~~lt~eef~~l~-GHs~~V~~Lafs~----~laSgS~D~tvr~vWD~~tG~~~~~lk~g-----H~~~V~sVA  387 (630)
                      +||+.|++.+     .++. .|...+..|+|+|    .+++++.++++. +||+.+++...++..+     +...+..++
T Consensus        22 v~D~~t~~~~-----~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~-~~d~~t~~~~~~~~~~~~~~~~~~~~~~v~   95 (346)
T d1jmxb_          22 VVDVASDTVY-----KSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIY-GIDLDTCKNTFHANLSSVPGEVGRSMYSFA   95 (346)
T ss_dssp             EEETTTTEEE-----EEEECSSCCSSCEEEECTTSSEEEEEETTTTEEE-EEETTTTEEEEEEESCCSTTEEEECSSCEE
T ss_pred             EEECCCCCEE-----EEEEcCCCCCcceEEECCCCCEEEEEECCCCcEE-EEeCccCeeeeeecccccccccCCceEEEE
Confidence            4444455444     3332 3445567888888    358888999999 9999999988877632     233456899


Q ss_pred             EcCCCCeEEeecCCC-------------------CCccccC------CcceEEEeecCCCe-EEEecCCcEEEEEeCCCC
Q 006825          388 SSVTGHKERRSSDER-------------------DTSSEKG------GRRSSSATDDSQDV-SFHGQERVRVRQYGKSCK  441 (630)
Q Consensus       388 fSpdG~~lasgS~D~-------------------dt~s~~g------h~~~Vsa~~~s~d~-l~Sgs~Dg~VriWd~~~~  441 (630)
                      |+|||+++...+.+.                   .+.....      ....+..+.+..++ ++..+  ..+.+|+..+.
T Consensus        96 ~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~  173 (346)
T d1jmxb_          96 ISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAG--PDIYKMDVKTG  173 (346)
T ss_dssp             ECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCEEEES--SSEEEECTTTC
T ss_pred             EecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecCCCEEEEeC--CcceEEEccCC
Confidence            999999887654322                   0111000      01112222333444 33332  33667777655


Q ss_pred             cccceeeeeEecccCcCEEEEEEcc--------------------------CCCEEEEEeCCCcEEEEECcCCceeeeee
Q 006825          442 DLTALYKCQEIQAHNGSIWSIKFSL--------------------------DGRYLASAGEDCVIHVWQVVESERKGELL  495 (630)
Q Consensus       442 el~~~~~v~tL~gHt~~V~sVaFSp--------------------------DG~~LASgS~DgtIrVWDl~tg~~~~~l~  495 (630)
                      +.     +..+..|. .+..+.|+|                          ....++++..+..+.+|++.++...... 
T Consensus       174 ~~-----~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  246 (346)
T d1jmxb_         174 KY-----TVALPLRN-WNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQE-  246 (346)
T ss_dssp             CE-----EEEECSTT-CCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEE-
T ss_pred             CE-----EEEEecCC-CccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEECCCCceEEEE-
Confidence            32     33333332 122333333                          3334455666777888998887765543 


Q ss_pred             cccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeC-CCCceEEeccCCCCEEEEE
Q 006825          496 EKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLS  574 (630)
Q Consensus       496 ~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL~GHs~~V~sLa  574 (630)
                         ...+...+..+.+++++.+++.... +.|                       .+|+. +++.+..+. +...+.+++
T Consensus       247 ---~~~~~~~~~~~~~~~~~~~~~~~~~-~~v-----------------------~v~d~~~~~~~~~~~-~~~~~~~va  298 (346)
T d1jmxb_         247 ---FADLTELYFTGLRSPKDPNQIYGVL-NRL-----------------------AKYDLKQRKLIKAAN-LDHTYYCVA  298 (346)
T ss_dssp             ---EEECSSCEEEEEECSSCTTEEEEEE-SEE-----------------------EEEETTTTEEEEEEE-CSSCCCEEE
T ss_pred             ---eecccceeEEEEEeCCCCEEEEecC-CeE-----------------------EEEECCCCcEEEEEc-CCCCEEEEE
Confidence               3566778888899998888777644 445                       78888 667777665 455799999


Q ss_pred             EcCC-CeEEEEECCCcEEEEeCCCCcEEEEEe
Q 006825          575 WSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS  605 (630)
Q Consensus       575 fSPd-~~LaSgS~DgtVrIWDl~tg~~l~t~~  605 (630)
                      |+|| ++|++++.|++|+|||+.+++++.++.
T Consensus       299 ~s~DG~~l~v~~~d~~v~v~D~~t~~~i~~i~  330 (346)
T d1jmxb_         299 FDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIK  330 (346)
T ss_dssp             ECSSSSCEEEESBSSEEEEEETTTTEEEEEEE
T ss_pred             EcCCCCEEEEEeCCCcEEEEECccCCEEEEEE
Confidence            9999 999999999999999999999999998

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.67  E-value=1.5e-15  Score=150.88  Aligned_cols=247  Identities=8%  Similarity=-0.070  Sum_probs=167.5

Q ss_pred             EEeec---ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCC
Q 006825          345 LMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQ  421 (630)
Q Consensus       345 Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~  421 (630)
                      ++|++   +|++++.|++|. +||+++++.+++++..|...+.+|+|+|||+++.                         
T Consensus         2 ~a~~~~~~~l~~~~~~~~v~-v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~-------------------------   55 (346)
T d1jmxb_           2 PALKAGHEYMIVTNYPNNLH-VVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAY-------------------------   55 (346)
T ss_dssp             CCCCTTCEEEEEEETTTEEE-EEETTTTEEEEEEECSSCCSSCEEEECTTSSEEE-------------------------
T ss_pred             ccCCCCCcEEEEEcCCCEEE-EEECCCCCEEEEEEcCCCCCcceEEECCCCCEEE-------------------------
Confidence            35555   799999999999 9999999999998867788889999999999774                         


Q ss_pred             CeEEEecCCcEEEEEeCCCCcccceeee-eEecccCcCEEEEEEccCCCEEEEEe------------CCCcEEEEECcCC
Q 006825          422 DVSFHGQERVRVRQYGKSCKDLTALYKC-QEIQAHNGSIWSIKFSLDGRYLASAG------------EDCVIHVWQVVES  488 (630)
Q Consensus       422 d~l~Sgs~Dg~VriWd~~~~el~~~~~v-~tL~gHt~~V~sVaFSpDG~~LASgS------------~DgtIrVWDl~tg  488 (630)
                         +++..++.|++||..+++....... .....+...+..++|+|||++|+.++            .+..+.+|+..++
T Consensus        56 ---v~~~~~~~v~~~d~~t~~~~~~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~  132 (346)
T d1jmxb_          56 ---VLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADG  132 (346)
T ss_dssp             ---EEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGG
T ss_pred             ---EEECCCCcEEEEeCccCeeeeeecccccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccc
Confidence               4566778999999988754211110 11112234567899999999998775            5788999999887


Q ss_pred             ceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccc-----------cccccCccc----------
Q 006825          489 ERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINR-----------KSLSLDHMV----------  547 (630)
Q Consensus       489 ~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~-----------~s~s~d~~i----------  547 (630)
                      +....+..   ......+..+.+++++.+++++..   +.+|+.......           ..++++...          
T Consensus       133 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (346)
T d1jmxb_         133 LEAKPVRT---FPMPRQVYLMRAADDGSLYVAGPD---IYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHE  206 (346)
T ss_dssp             GGBCCSEE---EECCSSCCCEEECTTSCEEEESSS---EEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCE
T ss_pred             eeeeEEEe---eeccCceEEEEecCCCEEEEeCCc---ceEEEccCCCEEEEEecCCCccceEEeccccEEEEEecCCCc
Confidence            76554321   111233445667777777665422   233332211110           011111100          


Q ss_pred             -----------------------cccEEEeC-CCCc-eEEeccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCCCcEE
Q 006825          548 -----------------------VPETVFAL-SDKP-ICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCL  601 (630)
Q Consensus       548 -----------------------~~~~Vwdl-sgk~-l~tL~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg~~l  601 (630)
                                             ....+|+. ++.. ...+..|...+..+.++++ .+++... ++.|++||+.+++++
T Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~v~d~~~~~~~  285 (346)
T d1jmxb_         207 FSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV-LNRLAKYDLKQRKLI  285 (346)
T ss_dssp             EEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE-ESEEEEEETTTTEEE
T ss_pred             eEeeeeeeeeccCceeEeeccCCceEEEEECCCCceEEEEeecccceeEEEEEeCCCCEEEEec-CCeEEEEECCCCcEE
Confidence                                   00134555 3333 3345678889999999998 7777665 457999999999999


Q ss_pred             EEEecCCceEEEE-cCCCcEEEEecce
Q 006825          602 KIFSHSDYDISLV-DRLMLRFAYGAFL  627 (630)
Q Consensus       602 ~t~~H~~~V~sVa-s~~~~~lAsgs~~  627 (630)
                      ..+.+...+++++ ++++..+++++..
T Consensus       286 ~~~~~~~~~~~va~s~DG~~l~v~~~d  312 (346)
T d1jmxb_         286 KAANLDHTYYCVAFDKKGDKLYLGGTF  312 (346)
T ss_dssp             EEEECSSCCCEEEECSSSSCEEEESBS
T ss_pred             EEEcCCCCEEEEEEcCCCCEEEEEeCC
Confidence            9999777899999 8899888887643

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.65  E-value=3.8e-15  Score=150.04  Aligned_cols=272  Identities=9%  Similarity=-0.057  Sum_probs=163.6

Q ss_pred             eEEEEcCCCceEeeecceeeecCccceeEEEeec---ceEe----------ecCCCccEecccCCCCceeEEecCCcc--
Q 006825          316 KKVKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQ---NVEE----------GNKDSFDLNNNGSSGGGMKSKKKGSWF--  380 (630)
Q Consensus       316 ~~l~dv~TG~~lt~eef~~l~GHs~~V~~Lafs~---~laS----------gS~D~tvr~vWD~~tG~~~~~lk~gH~--  380 (630)
                      ..+||..||+.+     .++.++.  +..++|+|   .|+.          ++.|+.|+ +||.++++.+..+. .+.  
T Consensus        30 v~v~D~~tg~~~-----~~~~~g~--~~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~-v~D~~t~~~~~~~~-~~~~~  100 (355)
T d2bbkh_          30 QFVIDGEAGRVI-----GMIDGGF--LPNPVVADDGSFIAHASTVFSRIARGERTDYVE-VFDPVTLLPTADIE-LPDAP  100 (355)
T ss_dssp             EEEEETTTTEEE-----EEEEECS--SCEEEECTTSSCEEEEEEEEEETTEEEEEEEEE-EECTTTCCEEEEEE-ETTCC
T ss_pred             EEEEECCCCcEE-----EEEECCC--CCceEEcCCCCEEEEEeCCCccccccCCCCEEE-EEECCCCCEEEEEe-cCCcc
Confidence            457777777777     4444333  33688888   3332          45688999 99999999888765 222  


Q ss_pred             -----CCEEEEEEcCCCCeEEeecCCCC---------Ccc----ccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCc
Q 006825          381 -----KSIRTVASSVTGHKERRSSDERD---------TSS----EKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKD  442 (630)
Q Consensus       381 -----~~V~sVAfSpdG~~lasgS~D~d---------t~s----~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~e  442 (630)
                           .....++|+|+|+++...+...+         +..    ...+.. ...........+..+.|++...+......
T Consensus       101 ~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~dg~~~~v~~~~~~  179 (355)
T d2bbkh_         101 RFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDC-YHIFPTAPDTFFMHCRDGSLAKVAFGTEG  179 (355)
T ss_dssp             CCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE-EEEEEEETTEEEEEETTSCEEEEECCSSS
T ss_pred             eeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEecCCc-ceEeecCCcceEEEcCCCCEEEEEecCCC
Confidence                 22345899999998776543321         111    111111 11111222233445556665555443322


Q ss_pred             ccceeeee-EecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccCcc----------cceEEEEE
Q 006825          443 LTALYKCQ-EIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHL----------NMLLLANG  511 (630)
Q Consensus       443 l~~~~~v~-tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~----------~~V~svaf  511 (630)
                      ........ ....|...+....+.+++..++.++.++.+++|++..+.......   ...+.          .....+++
T Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~---~~~~~~~~~~~~~~p~~~~~~~~  256 (355)
T d2bbkh_         180 TPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPA---VEALTEAERADGWRPGGWQQVAY  256 (355)
T ss_dssp             CCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCC---EESSCHHHHHTTEEECSSSCEEE
T ss_pred             eEEEEecccccceecceeeeccccCCCCeEEEecCCCeEEEEecCCCcEEEEec---cCCcccceEeeeeeccceEEEEE
Confidence            11111111 113455567778889999999999999999999998775422110   11111          12234677


Q ss_pred             CCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeC-CCCceEEeccCCCCEEEEEEcCC-C--eEEEEECC
Q 006825          512 SPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSWSKS-Q--HLLSSSMD  587 (630)
Q Consensus       512 Spdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL~GHs~~V~sLafSPd-~--~LaSgS~D  587 (630)
                      ++++..++....++....          .......+   .+|+. +++.+.++.. ...+.+++|+|| +  ++++++.|
T Consensus       257 ~~d~~~~~~~~~~~~~~~----------~~~~~~~v---~v~d~~t~~~~~~~~~-~~~~~~~a~spDG~~~l~v~~~~d  322 (355)
T d2bbkh_         257 HRALDRIYLLVDQRDEWR----------HKTASRFV---VVLDAKTGERLAKFEM-GHEIDSINVSQDEKPLLYALSTGD  322 (355)
T ss_dssp             ETTTTEEEEEEEECCTTC----------TTSCEEEE---EEEETTTCCEEEEEEE-EEEECEEEECCSSSCEEEEEETTT
T ss_pred             eCCCCeEEEEeccCCcee----------ecCCCCeE---EEEeCCCCcEEEEecC-CCCEEEEEEcCCCCeEEEEEECCC
Confidence            777777666544332110          01111122   78888 6788777763 356899999999 5  45677889


Q ss_pred             CcEEEEeCCCCcEEEEEe-cCCceEEEE
Q 006825          588 KTVRLWHLSSKTCLKIFS-HSDYDISLV  614 (630)
Q Consensus       588 gtVrIWDl~tg~~l~t~~-H~~~V~sVa  614 (630)
                      ++|+|||+.+++.++++. +.....+|.
T Consensus       323 ~~i~v~D~~tg~~~~~i~~~G~~p~~i~  350 (355)
T d2bbkh_         323 KTLYIHDAESGEELRSVNQLGHGPQVIT  350 (355)
T ss_dssp             TEEEEEETTTCCEEEEECCCCSSCCEEE
T ss_pred             CEEEEEECCCCCEEEEEeCcCCCccEEE
Confidence            999999999999999997 665555555

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.52  E-value=3.1e-12  Score=126.59  Aligned_cols=264  Identities=12%  Similarity=0.065  Sum_probs=163.0

Q ss_pred             eeEEEEcCCCceEeeecceeeecCccceeEEEeec---ce-EeecCCCccEecccCCCCceeEEec--CCccCCEEEEEE
Q 006825          315 WKKVKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQ---NV-EEGNKDSFDLNNNGSSGGGMKSKKK--GSWFKSIRTVAS  388 (630)
Q Consensus       315 ~~~l~dv~TG~~lt~eef~~l~GHs~~V~~Lafs~---~l-aSgS~D~tvr~vWD~~tG~~~~~lk--~gH~~~V~sVAf  388 (630)
                      ..++|++.+...++   ......|...|+.|+|+|   +| +++..|++++ +|++..+....++.  ..+...+..++|
T Consensus        15 ~I~v~~~~~~~~l~---~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~-~~~i~~~~~~~~~~~~~~~~~~p~~l~~   90 (333)
T d1ri6a_          15 QIHVWNLNHEGALT---LTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVL-AYRIAPDDGALTFAAESALPGSLTHIST   90 (333)
T ss_dssp             EEEEEEECTTSCEE---EEEEEECSSCCCCEEECTTSSEEEEEETTTTEEE-EEEECTTTCCEEEEEEEECSSCCSEEEE
T ss_pred             cEEEEEEcCCCCeE---EEEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEE-EEEEeCCCCcEEEeeecccCCCceEEEE
Confidence            35677776544331   123456888899999999   45 6677799999 99988765444333  134456778999


Q ss_pred             cCCCCeEEeecCCCCC--------------ccccCCcceEEEeecCCCe---EEEecCCcEEEEEeCCCCcccceee-ee
Q 006825          389 SVTGHKERRSSDERDT--------------SSEKGGRRSSSATDDSQDV---SFHGQERVRVRQYGKSCKDLTALYK-CQ  450 (630)
Q Consensus       389 SpdG~~lasgS~D~dt--------------~s~~gh~~~Vsa~~~s~d~---l~Sgs~Dg~VriWd~~~~el~~~~~-v~  450 (630)
                      +|||++++.++.+...              .....+...+.++.+++++   ++....+..|++|+........... ..
T Consensus        91 spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  170 (333)
T d1ri6a_          91 DHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAE  170 (333)
T ss_dssp             CTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEE
T ss_pred             cCCCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeecceeeeccccccceeeEEEeccCCcceeeecee
Confidence            9999998887654311              1123344445556666666   4455567789999876543221111 11


Q ss_pred             EecccCcCEEEEEEccCCCEEEEEe-CCCcEEEEECcCCceee----eee-cccccCcccceEEEEECCCCCEEEEee-C
Q 006825          451 EIQAHNGSIWSIKFSLDGRYLASAG-EDCVIHVWQVVESERKG----ELL-EKQEDGHLNMLLLANGSPEPTSLSPKH-L  523 (630)
Q Consensus       451 tL~gHt~~V~sVaFSpDG~~LASgS-~DgtIrVWDl~tg~~~~----~l~-~~~~~gh~~~V~svafSpdg~~lasgs-~  523 (630)
                      ....+......++|++++.+++... ..+...+|++.......    .+. .............+++++++++++... .
T Consensus       171 ~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~  250 (333)
T d1ri6a_         171 VTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRT  250 (333)
T ss_dssp             EECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETT
T ss_pred             eeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEecccCceeeeccc
Confidence            2233455678999999999877654 55678888875433211    111 001112234566788999998766654 4


Q ss_pred             CCeeeeecccccccccccccCccccccEEEeC-CCCceEE---eccCCCCEEEEEEcCC-CeEEEE-ECCCcEEEE--eC
Q 006825          524 DNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICS---FQGHLDDVLDLSWSKS-QHLLSS-SMDKTVRLW--HL  595 (630)
Q Consensus       524 Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~t---L~GHs~~V~sLafSPd-~~LaSg-S~DgtVrIW--Dl  595 (630)
                      ++.+                       .+|.+ .......   ...+...+..++|+|| ++|+.+ +.+++|+||  |.
T Consensus       251 ~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~p~~~a~spDGk~l~va~~~~~~v~v~~id~  307 (333)
T d1ri6a_         251 ASLI-----------------------TVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVG  307 (333)
T ss_dssp             TTEE-----------------------EEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEET
T ss_pred             CCeE-----------------------EEEEEcCCCCEEEEEEEeCCCCCeeEEEEeCCCCEEEEEECCCCeEEEEEEEC
Confidence            4556                       55554 2222222   2334456789999999 776655 457999999  66


Q ss_pred             CCCcE--EEEEe
Q 006825          596 SSKTC--LKIFS  605 (630)
Q Consensus       596 ~tg~~--l~t~~  605 (630)
                      .+|++  +..+.
T Consensus       308 ~tG~l~~~~~~~  319 (333)
T d1ri6a_         308 EQGLLHEKGRYA  319 (333)
T ss_dssp             TTTEEEEEEEEE
T ss_pred             CCCcEEEEEecc
Confidence            77765  44455

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.48  E-value=1.4e-12  Score=129.06  Aligned_cols=240  Identities=11%  Similarity=0.009  Sum_probs=151.6

Q ss_pred             eEeecCCCccEecccCCCCcee--EEecCCccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEec
Q 006825          351 VEEGNKDSFDLNNNGSSGGGMK--SKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQ  428 (630)
Q Consensus       351 laSgS~D~tvr~vWD~~tG~~~--~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs  428 (630)
                      .++++.|++|+ +|++.+...+  .... .|.+.|..|||||||++|.                            +++.
T Consensus         7 ~v~~~~~~~I~-v~~~~~~~~l~~~~~~-~~~~~v~~la~spDG~~L~----------------------------v~~~   56 (333)
T d1ri6a_           7 YIASPESQQIH-VWNLNHEGALTLTQVV-DVPGQVQPMVVSPDKRYLY----------------------------VGVR   56 (333)
T ss_dssp             EEEEGGGTEEE-EEEECTTSCEEEEEEE-ECSSCCCCEEECTTSSEEE----------------------------EEET
T ss_pred             EEECCCCCcEE-EEEEcCCCCeEEEEEE-cCCCCEeEEEEeCCCCEEE----------------------------EEEC
Confidence            58889999999 9998654332  2223 6889999999999999884                            3445


Q ss_pred             CCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeC-CCcEEEEECcCCceeeeeecccccCcccceE
Q 006825          429 ERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGE-DCVIHVWQVVESERKGELLEKQEDGHLNMLL  507 (630)
Q Consensus       429 ~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~-DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~  507 (630)
                      .++.|++|++....... . ......+...+..|+|+|||++|++++. +++|++|+...........   ...+...+.
T Consensus        57 ~d~~i~~~~i~~~~~~~-~-~~~~~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~---~~~~~~~~~  131 (333)
T d1ri6a_          57 PEFRVLAYRIAPDDGAL-T-FAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVD---VVEGLDGCH  131 (333)
T ss_dssp             TTTEEEEEEECTTTCCE-E-EEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEE---EECCCTTBC
T ss_pred             CCCeEEEEEEeCCCCcE-E-EeeecccCCCceEEEEcCCCCEEeecccCCCceeeeccccccceeccc---ccCCCccce
Confidence            67889999986554211 1 1112234455778999999999999885 6789999987665443321   244556677


Q ss_pred             EEEECCCCCEEEEeeCC-Ceeeeecccccccc------------------cccccCcccc--------ccEEEeCC--CC
Q 006825          508 LANGSPEPTSLSPKHLD-NHLEKKRRGRSINR------------------KSLSLDHMVV--------PETVFALS--DK  558 (630)
Q Consensus       508 svafSpdg~~lasgs~D-g~I~i~~~~~~~~~------------------~s~s~d~~i~--------~~~Vwdls--gk  558 (630)
                      .+.++|++++++.+..+ ..|.++........                  ..+..+....        ...+|...  ..
T Consensus       132 ~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  211 (333)
T d1ri6a_         132 SANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHG  211 (333)
T ss_dssp             CCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTS
T ss_pred             EEEeeecceeeeccccccceeeEEEeccCCcceeeeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeeccccc
Confidence            88999999988877644 45655554331110                  0111111110        01233321  11


Q ss_pred             c---eEEec------cCCCCEEEEEEcCC-Ce-EEEEECCCcEEEEeCCCCcEEEEE----ecCCceEEEE-cCCCcEEE
Q 006825          559 P---ICSFQ------GHLDDVLDLSWSKS-QH-LLSSSMDKTVRLWHLSSKTCLKIF----SHSDYDISLV-DRLMLRFA  622 (630)
Q Consensus       559 ~---l~tL~------GHs~~V~sLafSPd-~~-LaSgS~DgtVrIWDl~tg~~l~t~----~H~~~V~sVa-s~~~~~lA  622 (630)
                      .   ...+.      ........++++++ ++ ++.+..++++.+|++.....+..+    .+...+++++ +|++.+++
T Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~spDGk~l~  291 (333)
T d1ri6a_         212 NIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLI  291 (333)
T ss_dssp             CCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEE
T ss_pred             ceeeeeeeeeeecCCCccccceeEEEecccCceeeecccCCeEEEEEEcCCCCEEEEEEEeCCCCCeeEEEEeCCCCEEE
Confidence            1   11111      12345678899999 54 456667899999998765433222    2566788888 99999876


Q ss_pred             Eec
Q 006825          623 YGA  625 (630)
Q Consensus       623 sgs  625 (630)
                      .+.
T Consensus       292 va~  294 (333)
T d1ri6a_         292 AAG  294 (333)
T ss_dssp             EEC
T ss_pred             EEE
Confidence            654

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.43  E-value=9.1e-13  Score=132.24  Aligned_cols=259  Identities=10%  Similarity=-0.052  Sum_probs=158.6

Q ss_pred             ceeecCCCCcccCCCccccccCCCCCcccccccEEEEECCCCcEEEEeeecCCCceeEEEEcCCCceEeeecceeeecCc
Q 006825          260 SMSINGNGNYIGNSGEVVEDFDGNGTAGVAEQGCLIKNLDNGKEFVVNEIQEDGTWKKVKEVGTGRQLTIEEFEMCVGHS  339 (630)
Q Consensus       260 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~LddG~~~~v~e~~~dg~~~~l~dv~TG~~lt~eef~~l~GHs  339 (630)
                      ++++||||++|...+....    .....+.++.++|||+.+|+..-.......            ..         ....
T Consensus        51 ~~a~SpDg~~l~v~~~~~~----~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~------------~~---------~~~~  105 (355)
T d2bbkh_          51 NPVVADDGSFIAHASTVFS----RIARGERTDYVEVFDPVTLLPTADIELPDA------------PR---------FLVG  105 (355)
T ss_dssp             EEEECTTSSCEEEEEEEEE----ETTEEEEEEEEEEECTTTCCEEEEEEETTC------------CC---------CCBS
T ss_pred             ceEEcCCCCEEEEEeCCCc----cccccCCCCEEEEEECCCCCEEEEEecCCc------------ce---------eecC
Confidence            4799999998843331111    112334456666777666654332221110            00         0011


Q ss_pred             cceeEEEeec-----ceEeecCCCccEecccCCCCceeEEecCCcc------CCEEEEEEcCCCCeEEeecCCCCC----
Q 006825          340 PIVQELMRRQ-----NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWF------KSIRTVASSVTGHKERRSSDERDT----  404 (630)
Q Consensus       340 ~~V~~Lafs~-----~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~------~~V~sVAfSpdG~~lasgS~D~dt----  404 (630)
                      .....++|++     .+++.+.+..+. +|+..+++.+.++.....      .....+++++||+.+.....+...    
T Consensus       106 ~~~~~~~~s~dg~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~  184 (355)
T d2bbkh_         106 TYPWMTSLTPDGKTLLFYQFSPAPAVG-VVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEIT  184 (355)
T ss_dssp             CCGGGEEECTTSSEEEEEECSSSCEEE-EEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEE
T ss_pred             CCCceEEEecCCCeeEEecCCCCceee-eeecCCCcEeeEEecCCcceEeecCCcceEEEcCCCCEEEEEecCCCeEEEE
Confidence            2234567777     344556677788 999999998887763221      233468999999987665444311    


Q ss_pred             --cc-ccCCcceEEEeecCCC--eEEEecCCcEEEEEeCCCCcccceeeeeEecccC----------cCEEEEEEccCCC
Q 006825          405 --SS-EKGGRRSSSATDDSQD--VSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHN----------GSIWSIKFSLDGR  469 (630)
Q Consensus       405 --~s-~~gh~~~Vsa~~~s~d--~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt----------~~V~sVaFSpDG~  469 (630)
                        .. ...+...+....+..+  .++..+.++++++|+...++...   +....+|.          .....+++++++.
T Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~---~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~  261 (355)
T d2bbkh_         185 HTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKF---LPAVEALTEAERADGWRPGGWQQVAYHRALD  261 (355)
T ss_dssp             ECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEE---CCCEESSCHHHHHTTEEECSSSCEEEETTTT
T ss_pred             ecccccceecceeeeccccCCCCeEEEecCCCeEEEEecCCCcEEE---EeccCCcccceEeeeeeccceEEEEEeCCCC
Confidence              11 2222222222222222  37788899999999998765321   11222221          2334588999999


Q ss_pred             EEEEEeCC----------CcEEEEECcCCceeeeeecccccCcccceEEEEECCCCC--EEEEeeCCCeeeeeccccccc
Q 006825          470 YLASAGED----------CVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPT--SLSPKHLDNHLEKKRRGRSIN  537 (630)
Q Consensus       470 ~LASgS~D----------gtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~--~lasgs~Dg~I~i~~~~~~~~  537 (630)
                      +++....+          .+|.+||+.+++.+..+.      +...+..++|+|||+  +++++..++.|          
T Consensus       262 ~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~------~~~~~~~~a~spDG~~~l~v~~~~d~~i----------  325 (355)
T d2bbkh_         262 RIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFE------MGHEIDSINVSQDEKPLLYALSTGDKTL----------  325 (355)
T ss_dssp             EEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEE------EEEEECEEEECCSSSCEEEEEETTTTEE----------
T ss_pred             eEEEEeccCCceeecCCCCeEEEEeCCCCcEEEEec------CCCCEEEEEEcCCCCeEEEEEECCCCEE----------
Confidence            88776544          369999999998877752      234577899999997  45667778998          


Q ss_pred             ccccccCccccccEEEeC-CCCceEEeccCCCCEEEEEEc
Q 006825          538 RKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSWS  576 (630)
Q Consensus       538 ~~s~s~d~~i~~~~Vwdl-sgk~l~tL~GHs~~V~sLafS  576 (630)
                                   .+|+. +++.++++.++...-..+.+.
T Consensus       326 -------------~v~D~~tg~~~~~i~~~G~~p~~i~~~  352 (355)
T d2bbkh_         326 -------------YIHDAESGEELRSVNQLGHGPQVITTA  352 (355)
T ss_dssp             -------------EEEETTTCCEEEEECCCCSSCCEEECC
T ss_pred             -------------EEEECCCCCEEEEEeCcCCCccEEEeC
Confidence                         88998 899999998776555555443

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.39  E-value=1.2e-10  Score=117.73  Aligned_cols=274  Identities=6%  Similarity=-0.150  Sum_probs=154.1

Q ss_pred             ecCccceeEEEeec---ceE-e----ecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCC-----
Q 006825          336 VGHSPIVQELMRRQ---NVE-E----GNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDER-----  402 (630)
Q Consensus       336 ~GHs~~V~~Lafs~---~la-S----gS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~-----  402 (630)
                      .+|...+..++++|   .++ +    .+.+..+. +||..+|+.+.++. ++...  .++|||||++++....+.     
T Consensus        17 ~~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~-v~D~~tg~~~~~~~-~~~~~--~~a~SpDG~~l~va~~~~~~~~~   92 (373)
T d2madh_          17 GAADGPTNDEAPGADGRRSYINLPAHHSAIIQQW-VLDAGSGSILGHVN-GGFLP--NPVAAHSGSEFALASTSFSRIAK   92 (373)
T ss_pred             ccCCCCccccccCCCCCEEEEEcccccCCCceEE-EEECCCCCEEEEEe-CCCCc--cEEEcCCCCEEEEEeecCCcccc
Confidence            35677788888888   232 2    23445688 99999999999987 44443  699999999988865432     


Q ss_pred             ----------C--Ccc----ccCCcceEEEeecCCCe-----------EEEecCCcEEEEEeCCCCcccceeeeeEeccc
Q 006825          403 ----------D--TSS----EKGGRRSSSATDDSQDV-----------SFHGQERVRVRQYGKSCKDLTALYKCQEIQAH  455 (630)
Q Consensus       403 ----------d--t~s----~~gh~~~Vsa~~~s~d~-----------l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gH  455 (630)
                                |  +.+    ...+..........+..           ++....+..+.+|+....+         ...|
T Consensus        93 ~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~---------~~~~  163 (373)
T d2madh_          93 GKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSS---------DDQL  163 (373)
T ss_pred             cccceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCe---------EEEE
Confidence                      1  111    11111111111111111           2222334445555544332         2345


Q ss_pred             CcCEEEEEEccCCCE-EEEEeCCCcEEEEECcCCceeeeeeccc-ccCcccceEEEEECCCCCEEEEeeCCCeeeeeccc
Q 006825          456 NGSIWSIKFSLDGRY-LASAGEDCVIHVWQVVESERKGELLEKQ-EDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRG  533 (630)
Q Consensus       456 t~~V~sVaFSpDG~~-LASgS~DgtIrVWDl~tg~~~~~l~~~~-~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~  533 (630)
                      .....++.|+|+|+. +++.+.|+++.+|+...+.......... ..+.......+.+.+++.+++ .+.++.+.++...
T Consensus       164 ~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~  242 (373)
T d2madh_         164 LSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVW-PVYSGKILQADIS  242 (373)
T ss_pred             eccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCceEEE-ecCCceEEEEEcC
Confidence            566789999999875 4688999999999998887665543111 122223344566677665554 4467777555544


Q ss_pred             ccccccccccC--ccccccEEEeCCCCceEEeccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCCCcEEEEEecCCce
Q 006825          534 RSINRKSLSLD--HMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYD  610 (630)
Q Consensus       534 ~~~~~~s~s~d--~~i~~~~Vwdlsgk~l~tL~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg~~l~t~~H~~~V  610 (630)
                      ..........+  ........|.......  +..+...-....+... ..+++...+++|.+||+.+++.+..+.+...+
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~~~~~~  320 (373)
T d2madh_         243 AAGATNKAPIDALSGGRKADTWRPGGWQQ--VAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGHDV  320 (373)
T ss_pred             CCeEEEEEeeccccCcEEeeeeccCccee--eEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCCcEEEEecCCCCe
Confidence            32111000000  0000000011100000  1111111111222223 56678888999999999999999999988889


Q ss_pred             EEEE-cCCCcE--EEEec
Q 006825          611 ISLV-DRLMLR--FAYGA  625 (630)
Q Consensus       611 ~sVa-s~~~~~--lAsgs  625 (630)
                      .+++ ++++..  ++++.
T Consensus       321 ~~~a~spDG~~~l~vt~~  338 (373)
T d2madh_         321 DAISVAQDGGPDLYALSA  338 (373)
T ss_pred             eEEEECCCCCEEEEEEeC
Confidence            9999 888764  44454

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.35  E-value=1.8e-11  Score=125.36  Aligned_cols=243  Identities=5%  Similarity=-0.121  Sum_probs=139.8

Q ss_pred             EEEEcCCCceEeeecceeeecCccceeEEEeec---c----------eEeecCCCccEecccCCCCceeEEecCCccC--
Q 006825          317 KVKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQ---N----------VEEGNKDSFDLNNNGSSGGGMKSKKKGSWFK--  381 (630)
Q Consensus       317 ~l~dv~TG~~lt~eef~~l~GHs~~V~~Lafs~---~----------laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~--  381 (630)
                      .++|..+|+.+     .++.+|...  .++|+|   .          +++|+.|++|+ +||..+++.+..+. .|..  
T Consensus        49 ~~~d~~~~~~~-----~~~~~~~~~--~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~-v~D~~t~~~~~~i~-~p~~~~  119 (368)
T d1mdah_          49 WVSCAGCGVTL-----GHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVE-VFDPVTFLPIADIE-LPDAPR  119 (368)
T ss_dssp             EEEETTTTEEE-----EEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEE-EECTTTCCEEEEEE-ETTSCS
T ss_pred             EEEeCCCCcEE-----EEEeCCCCC--cceECCCCCEEEEEcccCccccccccCCeEE-EEECCCCcEeeeec-CCccce
Confidence            35567777777     444444332  466666   2          23456789999 99999999988775 2221  


Q ss_pred             -----CEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccC
Q 006825          382 -----SIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHN  456 (630)
Q Consensus       382 -----~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt  456 (630)
                           ....++|||||++++.+                            ...++.|.+||+.+++.     +..+..+.
T Consensus       120 ~~~g~~p~~~a~SpDGk~l~va----------------------------~~~~~~v~~~d~~~~~~-----~~~~~~~~  166 (368)
T d1mdah_         120 FSVGPRVHIIGNCASSACLLFF----------------------------LFGSSAAAGLSVPGASD-----DQLTKSAS  166 (368)
T ss_dssp             CCBSCCTTSEEECTTSSCEEEE----------------------------ECSSSCEEEEEETTTEE-----EEEEECSS
T ss_pred             ecccCCccceEECCCCCEEEEE----------------------------eCCCCeEEEEECCCCcE-----eEEeeccC
Confidence                 12358999999987532                            23456799999987753     34444443


Q ss_pred             cCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeee-cccccCcccceEEEEECCCCCEEEEeeCCC--------ee
Q 006825          457 GSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELL-EKQEDGHLNMLLLANGSPEPTSLSPKHLDN--------HL  527 (630)
Q Consensus       457 ~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~-~~~~~gh~~~V~svafSpdg~~lasgs~Dg--------~I  527 (630)
                      ....   +......++..+.||++.+|++.......... ......+...+..+.+.+++..+.+.....        .+
T Consensus       167 ~~~~---~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~~~~~~~~~~  243 (368)
T d1mdah_         167 CFHI---HPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVASSILQGDIPAAGA  243 (368)
T ss_dssp             CCCC---EEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECBSSCCEEEECCSSCC
T ss_pred             cceE---ccCCCceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeecccccCcEEEEecCCCEEEEeecCCce
Confidence            3221   11133455566677777777765443322211 111233334444556666665554432222        11


Q ss_pred             eeeccccc--------------ccccccccCcccc----------------ccEEEeC-CCCceEEeccCCCCEEEEEEc
Q 006825          528 EKKRRGRS--------------INRKSLSLDHMVV----------------PETVFAL-SDKPICSFQGHLDDVLDLSWS  576 (630)
Q Consensus       528 ~i~~~~~~--------------~~~~s~s~d~~i~----------------~~~Vwdl-sgk~l~tL~GHs~~V~sLafS  576 (630)
                      .++.....              .....++.+....                ...+|+. +++.+.++. +...+..++|+
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~-~~~~~~~~a~s  322 (368)
T d1mdah_         244 TMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPIS-NGHDSDAIIAA  322 (368)
T ss_dssp             EEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCE-EEEEECEEEEC
T ss_pred             EEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCcEeEEec-CCCceeEEEEC
Confidence            11111000              0001111111110                0146777 677777665 34578999999


Q ss_pred             CC-C--eEEEEECCCcEEEEeCCCCcEEEEEe
Q 006825          577 KS-Q--HLLSSSMDKTVRLWHLSSKTCLKIFS  605 (630)
Q Consensus       577 Pd-~--~LaSgS~DgtVrIWDl~tg~~l~t~~  605 (630)
                      || +  ++++++.|++|+|||+.+++.++++.
T Consensus       323 pDG~~~ly~s~~~~~~v~v~D~~tgk~~~~i~  354 (368)
T d1mdah_         323 QDGASDNYANSAGTEVLDIYDAASDQDQSSVE  354 (368)
T ss_dssp             CSSSCEEEEEETTTTEEEEEESSSCEEEEECC
T ss_pred             CCCCEEEEEEeCCCCeEEEEECCCCCEEEEEE
Confidence            99 5  35677889999999999999999997

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.13  E-value=2.1e-09  Score=113.44  Aligned_cols=80  Identities=10%  Similarity=-0.097  Sum_probs=62.2

Q ss_pred             eEEEEcCCCceEeeecceeeecCccceeEEEeec---ceEeecC---------CCccEecccCCCCceeEEecCCccCCE
Q 006825          316 KKVKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQ---NVEEGNK---------DSFDLNNNGSSGGGMKSKKKGSWFKSI  383 (630)
Q Consensus       316 ~~l~dv~TG~~lt~eef~~l~GHs~~V~~Lafs~---~laSgS~---------D~tvr~vWD~~tG~~~~~lk~gH~~~V  383 (630)
                      ..++++.||+...+-+-.++.+|...|.++.|+|   .|+.++.         ++.+. +||+++|+.. .+. .|...+
T Consensus        38 ~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~-l~d~~~~~~~-~l~-~~~~~~  114 (470)
T d2bgra1          38 ILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYD-IYDLNKRQLI-TEE-RIPNNT  114 (470)
T ss_dssp             EEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEE-EEETTTTEEC-CSS-CCCTTE
T ss_pred             EEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEE-EEECCCCccc-ccc-cCCccc
Confidence            3578888887764444567778888999999999   5666643         45667 9999988754 466 789999


Q ss_pred             EEEEEcCCCCeEEee
Q 006825          384 RTVASSVTGHKERRS  398 (630)
Q Consensus       384 ~sVAfSpdG~~lasg  398 (630)
                      ..++|||||+++|..
T Consensus       115 ~~~~~SPDG~~ia~~  129 (470)
T d2bgra1         115 QWVTWSPVGHKLAYV  129 (470)
T ss_dssp             EEEEECSSTTCEEEE
T ss_pred             cccccccCcceeeEe
Confidence            999999999999754

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.07  E-value=1.9e-09  Score=109.96  Aligned_cols=248  Identities=8%  Similarity=-0.070  Sum_probs=146.1

Q ss_pred             eeecCCCCcccCCCccccccCCCCCcccccccEEEEECCCCcEEEEeeecCCCceeEEEEcCCCceEeeecceeeecCcc
Q 006825          261 MSINGNGNYIGNSGEVVEDFDGNGTAGVAEQGCLIKNLDNGKEFVVNEIQEDGTWKKVKEVGTGRQLTIEEFEMCVGHSP  340 (630)
Q Consensus       261 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~LddG~~~~v~e~~~dg~~~~l~dv~TG~~lt~eef~~l~GHs~  340 (630)
                      +++||||++|..++.    .-...+.+..+..+++||+.+++..........            .       ....|.  
T Consensus        70 ~a~spDg~~i~~~~~----~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~------------~-------~~~~g~--  124 (368)
T d1mdah_          70 AVAGHSGSDFALAST----SFARSAKGKRTDYVEVFDPVTFLPIADIELPDA------------P-------RFSVGP--  124 (368)
T ss_dssp             EEECTTSSCEEEEEE----EETTTTSSSEEEEEEEECTTTCCEEEEEEETTS------------C-------SCCBSC--
T ss_pred             ceECCCCCEEEEEcc----cCccccccccCCeEEEEECCCCcEeeeecCCcc------------c-------eecccC--
Confidence            689999999944431    111234455566666666666655433222110            0       011111  


Q ss_pred             ceeEEEeec---ceEee-cCCCccEecccCCCCceeEEecCC------ccCCEEEEEEcCCCCeEEeecCCCCC------
Q 006825          341 IVQELMRRQ---NVEEG-NKDSFDLNNNGSSGGGMKSKKKGS------WFKSIRTVASSVTGHKERRSSDERDT------  404 (630)
Q Consensus       341 ~V~~Lafs~---~laSg-S~D~tvr~vWD~~tG~~~~~lk~g------H~~~V~sVAfSpdG~~lasgS~D~dt------  404 (630)
                      ....++|+|   +|+.+ ..++++. +||+.+++...++...      +.....-+++++||+.+.....+...      
T Consensus       125 ~p~~~a~SpDGk~l~va~~~~~~v~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~  203 (368)
T d1mdah_         125 RVHIIGNCASSACLLFFLFGSSAAA-GLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVG  203 (368)
T ss_dssp             CTTSEEECTTSSCEEEEECSSSCEE-EEEETTTEEEEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECC
T ss_pred             CccceEECCCCCEEEEEeCCCCeEE-EEECCCCcEeEEeeccCcceEccCCCceEEEEcCCCCEEEEEecCCceeeeeee
Confidence            123578888   45444 4678999 9999999988877622      12233558889999877665544311      


Q ss_pred             -ccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEeccc----------CcCEEEEEEccCCCEEEE
Q 006825          405 -SSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAH----------NGSIWSIKFSLDGRYLAS  473 (630)
Q Consensus       405 -~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gH----------t~~V~sVaFSpDG~~LAS  473 (630)
                       .....+...+....+..++.+.....+.+++++..........   ....+          ......+++++++..++.
T Consensus       204 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v  280 (368)
T d1mdah_         204 AQCTGAQNCSSQAAQANYPGMLVWAVASSILQGDIPAAGATMKA---AIDGNESGRKADNFRSAGFQMVAKLKNTDGIMI  280 (368)
T ss_dssp             CCSCTTSCBCSCCEEETTTTEEEECBSSCCEEEECCSSCCEEEC---CCCSSCTHHHHTTEEECSSSCEEEETTTTEEEE
T ss_pred             cccccccccceeecccccCcEEEEecCCCEEEEeecCCceEEEe---ecccccceeeeeeecCCCceeEEEcCCCCEEEE
Confidence             1123333333444555555443444555666665544322111   11111          112235788999887766


Q ss_pred             EeCC---------CcEEEEECcCCceeeeeecccccCcccceEEEEECCCCC--EEEEeeCCCeeeeecccccccccccc
Q 006825          474 AGED---------CVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPT--SLSPKHLDNHLEKKRRGRSINRKSLS  542 (630)
Q Consensus       474 gS~D---------gtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~--~lasgs~Dg~I~i~~~~~~~~~~s~s  542 (630)
                      ...+         ..|.+||..+++.+..+      .+...+..++|+|||+  ++++...++.|               
T Consensus       281 ~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~------~~~~~~~~~a~spDG~~~ly~s~~~~~~v---------------  339 (368)
T d1mdah_         281 LTVEHSRSCLAAAENTSSVTASVGQTSGPI------SNGHDSDAIIAAQDGASDNYANSAGTEVL---------------  339 (368)
T ss_dssp             EEEECSSCTTSCEEEEEEEESSSCCEEECC------EEEEEECEEEECCSSSCEEEEEETTTTEE---------------
T ss_pred             EecCCCceeecCCceEEEEECCCCcEeEEe------cCCCceeEEEECCCCCEEEEEEeCCCCeE---------------
Confidence            5322         35999999999887774      2335677899999997  34566778888               


Q ss_pred             cCccccccEEEeC-CCCceEEeccC
Q 006825          543 LDHMVVPETVFAL-SDKPICSFQGH  566 (630)
Q Consensus       543 ~d~~i~~~~Vwdl-sgk~l~tL~GH  566 (630)
                              .+|+. +++.+.++...
T Consensus       340 --------~v~D~~tgk~~~~i~~g  356 (368)
T d1mdah_         340 --------DIYDAASDQDQSSVELD  356 (368)
T ss_dssp             --------EEEESSSCEEEEECCCC
T ss_pred             --------EEEECCCCCEEEEEECC
Confidence                    78887 78888887644

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.83  E-value=3.4e-09  Score=111.71  Aligned_cols=98  Identities=12%  Similarity=0.124  Sum_probs=75.7

Q ss_pred             CCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeC---------CCcEEEEECcCCceeeeeecccc
Q 006825          429 ERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGE---------DCVIHVWQVVESERKGELLEKQE  499 (630)
Q Consensus       429 ~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~---------DgtIrVWDl~tg~~~~~l~~~~~  499 (630)
                      .++.|.+|+..+++...+....+|..|...|.++.|||||++|+.++.         ++.+.|||+.+++.. .     .
T Consensus        34 ~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~~~-~-----l  107 (470)
T d2bgra1          34 QENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLI-T-----E  107 (470)
T ss_dssp             SSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEEC-C-----S
T ss_pred             cCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEECCCCccc-c-----c
Confidence            356699999998875444334566778889999999999999998854         567889999987643 3     2


Q ss_pred             cCcccceEEEEECCCCCEEEEeeCCCeeeeeccc
Q 006825          500 DGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRG  533 (630)
Q Consensus       500 ~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~  533 (630)
                      ..+...+..+.|+|||+.||.. .+..+.++...
T Consensus       108 ~~~~~~~~~~~~SPDG~~ia~~-~~~~l~~~~~~  140 (470)
T d2bgra1         108 ERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEP  140 (470)
T ss_dssp             SCCCTTEEEEEECSSTTCEEEE-ETTEEEEESST
T ss_pred             ccCCccccccccccCcceeeEe-ecccceEEECC
Confidence            6777889999999999999996 55666555443

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.73  E-value=1.1e-05  Score=79.19  Aligned_cols=179  Identities=11%  Similarity=0.080  Sum_probs=122.5

Q ss_pred             CCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCcEEEEE
Q 006825          357 DSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQY  436 (630)
Q Consensus       357 D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriW  436 (630)
                      ...+. .++. .|.....+...+......+++.++|.+++.                             ......+.++
T Consensus        92 ~~~i~-~~~~-~g~~~~~~~~~~~~~p~~~avd~~G~i~v~-----------------------------~~~~~~~~~~  140 (279)
T d1q7fa_          92 THQIQ-IYNQ-YGQFVRKFGATILQHPRGVTVDNKGRIIVV-----------------------------ECKVMRVIIF  140 (279)
T ss_dssp             GCEEE-EECT-TSCEEEEECTTTCSCEEEEEECTTSCEEEE-----------------------------ETTTTEEEEE
T ss_pred             ccccc-cccc-cccceeecCCCcccccceeccccCCcEEEE-----------------------------eeccceeeEe
Confidence            34444 4544 566666665566777778888887775543                             2223445555


Q ss_pred             eCCCCcccceeeeeE--ecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCC
Q 006825          437 GKSCKDLTALYKCQE--IQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPE  514 (630)
Q Consensus       437 d~~~~el~~~~~v~t--L~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpd  514 (630)
                      +....      .+.+  ...|......+++.++|+++++....+.|++||.. ++.+.++-   ..+.......|++.++
T Consensus       141 ~~~g~------~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~~~V~~~d~~-G~~~~~~g---~~g~~~~P~giavD~~  210 (279)
T d1q7fa_         141 DQNGN------VLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYE-GQYLRQIG---GEGITNYPIGVGINSN  210 (279)
T ss_dssp             CTTSC------EEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETT-CCEEEEES---CTTTSCSEEEEEECTT
T ss_pred             ccCCc------eeecccccccccccceeeeccceeEEeeeccccceeeeecC-Cceeeeec---ccccccCCcccccccC
Confidence            54332      1122  24566788999999999999999999999999974 55554431   2345566788999999


Q ss_pred             CCEEEEeeCC-CeeeeecccccccccccccCccccccEEEeCCCCceEEeccC--CCCEEEEEEcCCCeEEEEECCCcEE
Q 006825          515 PTSLSPKHLD-NHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGH--LDDVLDLSWSKSQHLLSSSMDKTVR  591 (630)
Q Consensus       515 g~~lasgs~D-g~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL~GH--s~~V~sLafSPd~~LaSgS~DgtVr  591 (630)
                      |.++++-..+ ..|                       .+|+..|+.+.++...  ......|++.|++.|+.+..++.|+
T Consensus       211 G~i~Vad~~~~~~v-----------------------~~f~~~G~~~~~~~~~~~~~~p~~vav~~dG~l~V~~~n~~v~  267 (279)
T d1q7fa_         211 GEILIADNHNNFNL-----------------------TIFTQDGQLISALESKVKHAQCFDVALMDDGSVVLASKDYRLY  267 (279)
T ss_dssp             CCEEEEECSSSCEE-----------------------EEECTTSCEEEEEEESSCCSCEEEEEEETTTEEEEEETTTEEE
T ss_pred             CeEEEEECCCCcEE-----------------------EEECCCCCEEEEEeCCCCCCCEeEEEEeCCCcEEEEeCCCeEE
Confidence            9988875443 346                       6777788877776433  3457899999996666677899999


Q ss_pred             EEeCCCCc
Q 006825          592 LWHLSSKT  599 (630)
Q Consensus       592 IWDl~tg~  599 (630)
                      +|......
T Consensus       268 ~fr~~~~~  275 (279)
T d1q7fa_         268 IYRYVQLA  275 (279)
T ss_dssp             EEECSCCC
T ss_pred             EEEeeeec
Confidence            99987643

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=98.72  E-value=6.7e-08  Score=103.12  Aligned_cols=303  Identities=10%  Similarity=-0.029  Sum_probs=168.8

Q ss_pred             cccccEEEEECCCCcEEEEeee-cCCCceeEEEEcCCCceEe-eecceeeecCccceeEEEeec----ceEeecCCCccE
Q 006825          288 VAEQGCLIKNLDNGKEFVVNEI-QEDGTWKKVKEVGTGRQLT-IEEFEMCVGHSPIVQELMRRQ----NVEEGNKDSFDL  361 (630)
Q Consensus       288 ~~~~~~~I~~LddG~~~~v~e~-~~dg~~~~l~dv~TG~~lt-~eef~~l~GHs~~V~~Lafs~----~laSgS~D~tvr  361 (630)
                      ...+.++|++|..++++...-. ..|+......+..|.+.+. ..++.....|-+......+.|    ..++...+.+|.
T Consensus        18 g~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~d~~~~rVa   97 (441)
T d1qnia2          18 GHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFINDKANTRVA   97 (441)
T ss_dssp             BTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEEETTTTEEE
T ss_pred             CCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEEEEcCCCCEEE
Confidence            5567899999999988776332 3333211111111111110 011223344667777666666    346777888999


Q ss_pred             ecccCCCCceeEEecCCccCCEEEEEEcCCCCe--EEeecCCCCCccccCCcceEEEeecCCCeEEEecCCcEEEEEeCC
Q 006825          362 NNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHK--ERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKS  439 (630)
Q Consensus       362 ~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~--lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~  439 (630)
                       +||+.++++...+...+...+..++|+|+|++  ++..+.+.           +....+.... -.-.....+..+|..
T Consensus        98 -vIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~-----------v~~~~dg~~~-~~~~~~~~~~~iD~~  164 (441)
T d1qnia2          98 -RIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFV-----------IPQPNDGTDF-SLDNSYTMFTAIDAE  164 (441)
T ss_dssp             -EEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSC-----------EESSCSSSCC-CGGGEEEEEEEEETT
T ss_pred             -EEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCc-----------ccccCccccc-ccccccceEEeecCc
Confidence             99999999988877678899999999999994  44333322           0000000000 000001235556666


Q ss_pred             CCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCC-----------------------------------------C
Q 006825          440 CKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGED-----------------------------------------C  478 (630)
Q Consensus       440 ~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~D-----------------------------------------g  478 (630)
                      +.+.     ..++... +....++|+|||+++++.+.+                                         +
T Consensus       165 t~~v-----~~qI~v~-~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~  238 (441)
T d1qnia2         165 TMDV-----AWQVIVD-GNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSK  238 (441)
T ss_dssp             TCSE-----EEEEEES-SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCC
T ss_pred             ccee-----eEEEecC-CCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCCC
Confidence            5543     2222222 346778888888888877644                                         3


Q ss_pred             cEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEE-EeeCCCeeeeecccccccccccccCccccccEEEeCCC
Q 006825          479 VIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLS-PKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSD  557 (630)
Q Consensus       479 tIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~la-sgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsg  557 (630)
                      .+.||+......+..+.    .+  .....++++|||++++ ++..+.++.+|+..+.........+..           
T Consensus       239 v~vvd~~~~~~v~~~IP----vg--ksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~-----------  301 (441)
T d1qnia2         239 VPVVDGRGESEFTRYIP----VP--KNPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELR-----------  301 (441)
T ss_dssp             CCEEECSSSCSSEEEEC----CB--SSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGG-----------
T ss_pred             cEEEEcccCCceEEEEe----CC--CCccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcc-----------
Confidence            44444444333333321    11  2245689999999765 567888997766554111100000000           


Q ss_pred             CceEEeccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCC----------CcEEEEEe------cCCceEEEE-cCCCc
Q 006825          558 KPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSS----------KTCLKIFS------HSDYDISLV-DRLML  619 (630)
Q Consensus       558 k~l~tL~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~t----------g~~l~t~~------H~~~V~sVa-s~~~~  619 (630)
                      ..+.-.....-..+..+|.++ ..+.|...|.+|..|++..          ...+..+.      |...+.+.+ .|++.
T Consensus       302 ~~~~~~~~~glgplh~~fd~~g~~yts~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~t~~pdGk  381 (441)
T d1qnia2         302 DTIVAEPELGLGPLHTTFDGRGNAYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTESRDADGK  381 (441)
T ss_dssp             GGEEECCBCCSCEEEEEECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCCC
T ss_pred             eEEEeecccccCcccceecCCceEEEcccccceEEEeccchhhhhhccCCCceeEeccccccCCCCCccccccccCCCCc
Confidence            000000011112355689998 5667888999999999741          22344442      444444444 89999


Q ss_pred             EEEEecc
Q 006825          620 RFAYGAF  626 (630)
Q Consensus       620 ~lAsgs~  626 (630)
                      +|+++..
T Consensus       382 ~l~s~~k  388 (441)
T d1qnia2         382 WLVVLSK  388 (441)
T ss_dssp             EEEEEES
T ss_pred             EEEecCc
Confidence            9999843

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.51  E-value=1.5e-05  Score=76.00  Aligned_cols=219  Identities=10%  Similarity=-0.079  Sum_probs=122.6

Q ss_pred             cCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCC-------------CccccCCcceEEEeecCCCe--E-EEec
Q 006825          365 GSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERD-------------TSSEKGGRRSSSATDDSQDV--S-FHGQ  428 (630)
Q Consensus       365 D~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~d-------------t~s~~gh~~~Vsa~~~s~d~--l-~Sgs  428 (630)
                      |.. |...+.+. .+...+.+-+|||||++||-.+....             ......+........+++++  + +...
T Consensus        25 d~d-G~~~~~l~-~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~i~~~~~  102 (269)
T d2hqsa1          25 DYD-GYNQFVVH-RSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALS  102 (269)
T ss_dssp             ETT-SCSCEEEE-EESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSSCEEEEEECTTSSEEEEEEC
T ss_pred             cCC-CCCcEEEe-cCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCceeEEeeeecccccceecCCCCeeeEeee
Confidence            544 44444444 45777899999999999987655431             11133344455556666666  2 2222


Q ss_pred             CCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEE-EEeCCCcE--EEEECcCCceeeeeecccccCcccc
Q 006825          429 ERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLA-SAGEDCVI--HVWQVVESERKGELLEKQEDGHLNM  505 (630)
Q Consensus       429 ~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LA-SgS~DgtI--rVWDl~tg~~~~~l~~~~~~gh~~~  505 (630)
                      ..+...++.......    .......+........+++++..++ +...++..  .+.++..+.....      ......
T Consensus       103 ~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~------~~~~~~  172 (269)
T d2hqsa1         103 KTGSLNLYVMDLASG----QIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRI------TWEGSQ  172 (269)
T ss_dssp             TTSSCEEEEEETTTC----CEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEEC------CCSSSE
T ss_pred             cCCccceeecccccc----cceeeeeccccccccccccccccceecccccCCceEeeeecccccceee------eccccc
Confidence            222222222111111    1222334555566667888776544 44455554  4445554433222      344566


Q ss_pred             eEEEEECCCCCEEEEeeCCCeee-eecccccccccccccCccccccEEEeCCCCceEEeccCCCCEEEEEEcCC-CeEEE
Q 006825          506 LLLANGSPEPTSLSPKHLDNHLE-KKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLS  583 (630)
Q Consensus       506 V~svafSpdg~~lasgs~Dg~I~-i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL~GHs~~V~sLafSPd-~~LaS  583 (630)
                      .....++|+++.++..+.++... +                     .+.+..+... .+..+........|+|| ++|+-
T Consensus       173 ~~~~~~spdg~~~~~~~~~~~~~~i---------------------~~~~~~~~~~-~~~~~~~~~~~p~~SPDG~~i~f  230 (269)
T d2hqsa1         173 NQDADVSSDGKFMVMVSSNGGQQHI---------------------AKQDLATGGV-QVLSSTFLDETPSLAPNGTMVIY  230 (269)
T ss_dssp             EEEEEECTTSSEEEEEEECSSCEEE---------------------EEEETTTCCE-EECCCSSSCEEEEECTTSSEEEE
T ss_pred             ccccccccccceeEEEeecCCceee---------------------eEeecccccc-eEeecCccccceEECCCCCEEEE
Confidence            77889999999988876554221 0                     2333333333 33345566778899999 77775


Q ss_pred             EEC---CCcEEEEeCCCCcEEEEEecCCceEEEE-cCC
Q 006825          584 SSM---DKTVRLWHLSSKTCLKIFSHSDYDISLV-DRL  617 (630)
Q Consensus       584 gS~---DgtVrIWDl~tg~~l~t~~H~~~V~sVa-s~~  617 (630)
                      .+.   ...|.+|++..+...+.......+...+ +|.
T Consensus       231 ~s~~~~~~~l~~~~~dg~~~~~lt~~~g~~~~p~WSP~  268 (269)
T d2hqsa1         231 SSSQGMGSVLNLVSTDGRFKARLPATDGQVKFPAWSPY  268 (269)
T ss_dssp             EEEETTEEEEEEEETTSCCEEECCCSSSEEEEEEECCC
T ss_pred             EEcCCCCcEEEEEECCCCCEEEEeCCCCcEEeEEeCCC
Confidence            443   3578899998776654333555555555 553

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.47  E-value=2.6e-05  Score=74.28  Aligned_cols=206  Identities=11%  Similarity=0.027  Sum_probs=118.5

Q ss_pred             ccceeEEEeec---ceEeecCCCccEecc--cCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCC----------
Q 006825          339 SPIVQELMRRQ---NVEEGNKDSFDLNNN--GSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERD----------  403 (630)
Q Consensus       339 s~~V~~Lafs~---~laSgS~D~tvr~vW--D~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~d----------  403 (630)
                      ...+...+|+|   .||=.+.......+|  +..++.. ..+. .+...+....|+|+|+.++..+....          
T Consensus        38 ~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~spdg~~i~~~~~~~~~~~~~~~~~~  115 (269)
T d2hqsa1          38 PQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV-RQVA-SFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLA  115 (269)
T ss_dssp             SSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EEEE-CCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETT
T ss_pred             CCceeeeEECCCCCEEEEEEeeccCcceeeeecccCce-eEEe-eeecccccceecCCCCeeeEeeecCCccceeecccc
Confidence            34455667777   343222222211133  4444433 3444 67888899999999999887665431          


Q ss_pred             ---CccccCCcceEEEeecCCC---eEEEecCCc--EEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEe
Q 006825          404 ---TSSEKGGRRSSSATDDSQD---VSFHGQERV--RVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAG  475 (630)
Q Consensus       404 ---t~s~~gh~~~Vsa~~~s~d---~l~Sgs~Dg--~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS  475 (630)
                         ......+...........+   .++....++  .|.+++.....      ...+..+........|+|+|++++..+
T Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~------~~~~~~~~~~~~~~~~spdg~~~~~~~  189 (269)
T d2hqsa1         116 SGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGA------PQRITWEGSQNQDADVSSDGKFMVMVS  189 (269)
T ss_dssp             TCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSC------CEECCCSSSEEEEEEECTTSSEEEEEE
T ss_pred             cccceeeeeccccccccccccccccceecccccCCceEeeeeccccc------ceeeecccccccccccccccceeEEEe
Confidence               0011112222222222222   245544444  45555655543      234556677788899999999888776


Q ss_pred             CCC-cEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEe
Q 006825          476 EDC-VIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFA  554 (630)
Q Consensus       476 ~Dg-tIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwd  554 (630)
                      .++ ...+|.........++     ..+........|+|||+.|+..+..+..                 ..+   .+++
T Consensus       190 ~~~~~~~i~~~~~~~~~~~~-----~~~~~~~~~p~~SPDG~~i~f~s~~~~~-----------------~~l---~~~~  244 (269)
T d2hqsa1         190 SNGGQQHIAKQDLATGGVQV-----LSSTFLDETPSLAPNGTMVIYSSSQGMG-----------------SVL---NLVS  244 (269)
T ss_dssp             ECSSCEEEEEEETTTCCEEE-----CCCSSSCEEEEECTTSSEEEEEEEETTE-----------------EEE---EEEE
T ss_pred             ecCCceeeeEeecccccceE-----eecCccccceEECCCCCEEEEEEcCCCC-----------------cEE---EEEE
Confidence            544 4445444333222232     2233455678899999998876543211                 000   6777


Q ss_pred             CCCCceEEeccCCCCEEEEEEcC
Q 006825          555 LSDKPICSFQGHLDDVLDLSWSK  577 (630)
Q Consensus       555 lsgk~l~tL~GHs~~V~sLafSP  577 (630)
                      +.|.....|......+...+|+|
T Consensus       245 ~dg~~~~~lt~~~g~~~~p~WSP  267 (269)
T d2hqsa1         245 TDGRFKARLPATDGQVKFPAWSP  267 (269)
T ss_dssp             TTSCCEEECCCSSSEEEEEEECC
T ss_pred             CCCCCEEEEeCCCCcEEeEEeCC
Confidence            88888888888888889999998

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.46  E-value=2.5e-05  Score=79.99  Aligned_cols=170  Identities=7%  Similarity=-0.039  Sum_probs=95.5

Q ss_pred             CCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCC-cccceeeeeEe--cccCc
Q 006825          381 KSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCK-DLTALYKCQEI--QAHNG  457 (630)
Q Consensus       381 ~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~-el~~~~~v~tL--~gHt~  457 (630)
                      ..+-+++|+|||+++...                            .....+|++|+.... .+.   ....+  .....
T Consensus       145 ~h~h~v~~sPdG~~l~v~----------------------------d~g~d~v~~~~~~~~g~~~---~~~~~~~~~~g~  193 (365)
T d1jofa_         145 TGIHGMVFDPTETYLYSA----------------------------DLTANKLWTHRKLASGEVE---LVGSVDAPDPGD  193 (365)
T ss_dssp             CCEEEEEECTTSSEEEEE----------------------------ETTTTEEEEEEECTTSCEE---EEEEEECSSTTC
T ss_pred             CcceEEEECCCCCEEEEe----------------------------eCCCCEEEEEEccCCCcee---eccceeecCCCC
Confidence            346789999999877532                            222345777764322 211   12222  22345


Q ss_pred             CEEEEEEccCCCEEEEEe-CCCcEEEEECcCCceeeeee--cc------------cccCcccceEEEEECCCCCEEEEee
Q 006825          458 SIWSIKFSLDGRYLASAG-EDCVIHVWQVVESERKGELL--EK------------QEDGHLNMLLLANGSPEPTSLSPKH  522 (630)
Q Consensus       458 ~V~sVaFSpDG~~LASgS-~DgtIrVWDl~tg~~~~~l~--~~------------~~~gh~~~V~svafSpdg~~lasgs  522 (630)
                      ....++|+|+|+++.... .+++|.+|++..+.......  ..            ....+......+.++|+|++++++.
T Consensus       194 gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsn  273 (365)
T d1jofa_         194 HPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASS  273 (365)
T ss_dssp             CEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEE
T ss_pred             ceEEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEc
Confidence            688999999999885554 67899999987654321110  00            0112223456789999999988763


Q ss_pred             CC-CeeeeecccccccccccccCccccccEEEeC--CCCceE-----EeccCCCCEEEEEEcC-C-CeEE-EEECCCcEE
Q 006825          523 LD-NHLEKKRRGRSINRKSLSLDHMVVPETVFAL--SDKPIC-----SFQGHLDDVLDLSWSK-S-QHLL-SSSMDKTVR  591 (630)
Q Consensus       523 ~D-g~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl--sgk~l~-----tL~GHs~~V~sLafSP-d-~~La-SgS~DgtVr  591 (630)
                      .. ....               ...+   ..|.+  .+....     ...........++|+| + ++|+ +...+++|.
T Consensus       274 r~~~~~~---------------~~~i---~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~  335 (365)
T d1jofa_         274 RANKFEL---------------QGYI---AGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLE  335 (365)
T ss_dssp             EESSTTS---------------CCEE---EEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEE
T ss_pred             ccCCCcc---------------ceEE---EEEEecCCCceeeEeEeeEEEcCCCCccEEEecCCCCCEEEEEeCCCCeEE
Confidence            21 1100               0000   23333  122111     1112234457799998 5 6665 446789999


Q ss_pred             EEeCCCCc
Q 006825          592 LWHLSSKT  599 (630)
Q Consensus       592 IWDl~tg~  599 (630)
                      +|++....
T Consensus       336 v~~~~~~~  343 (365)
T d1jofa_         336 IYRWKDEF  343 (365)
T ss_dssp             EEEEETTE
T ss_pred             EEEEeCCc
Confidence            99876543

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=98.45  E-value=1.6e-06  Score=92.21  Aligned_cols=223  Identities=8%  Similarity=-0.049  Sum_probs=141.8

Q ss_pred             eEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCC---------CCccccCCcceEEEeecCC
Q 006825          351 VEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDER---------DTSSEKGGRRSSSATDDSQ  421 (630)
Q Consensus       351 laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~---------dt~s~~gh~~~Vsa~~~s~  421 (630)
                      .+||+.+++++ +||+.+++.++++.          +|+|++.. +.|.++.         .......|.-..+..+.++
T Consensus        14 f~Sgg~sG~V~-V~dlpS~r~l~~Ip----------Vfspd~~~-g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtp   81 (441)
T d1qnia2          14 FWSGGHQGEVR-VLGVPSMRELMRIP----------VFNVDSAT-GWGITNESKEILGGDQQYLNGDCHHPHISMTDGRY   81 (441)
T ss_dssp             EEECBTTCCEE-EEEETTTEEEEEEC----------SSSBCTTT-CTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEE
T ss_pred             EEeCCCCCcEE-EEeCCCCcEEEEEE----------eEcCCCCE-EEEECCccceEEecccccccCcccCCCcceecccC
Confidence            67899999999 99999999998875          38888764 2333321         0111223445667777788


Q ss_pred             Ce--E-EEecCCcEEEEEeCCCCcccceeeeeEec-ccCcCEEEEEEccCCC--EEEEEeCCCc----------------
Q 006825          422 DV--S-FHGQERVRVRQYGKSCKDLTALYKCQEIQ-AHNGSIWSIKFSLDGR--YLASAGEDCV----------------  479 (630)
Q Consensus       422 d~--l-~Sgs~Dg~VriWd~~~~el~~~~~v~tL~-gHt~~V~sVaFSpDG~--~LASgS~Dgt----------------  479 (630)
                      |+  + +....+.+|.++|+.+.+.     .+.+. .+...+..++|+|+|+  |++..+++..                
T Consensus        82 DGr~lfV~d~~~~rVavIDl~t~k~-----~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~  156 (441)
T d1qnia2          82 DGKYLFINDKANTRVARIRLDIMKT-----DKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYT  156 (441)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEE-----EEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEE
T ss_pred             CCCEEEEEcCCCCEEEEEECCCCcE-----eeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccc
Confidence            88  4 5667889999999988753     33332 4667899999999998  5665555432                


Q ss_pred             -EEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCe-eeeecccccc-----------cccccccCcc
Q 006825          480 -IHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNH-LEKKRRGRSI-----------NRKSLSLDHM  546 (630)
Q Consensus       480 -IrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~-I~i~~~~~~~-----------~~~s~s~d~~  546 (630)
                       +..+|..+.+...++..      ......++++|+|+++++.+.+.. +.........           ....+..++.
T Consensus       157 ~~~~iD~~t~~v~~qI~v------~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk  230 (441)
T d1qnia2         157 MFTAIDAETMDVAWQVIV------DGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGN  230 (441)
T ss_dssp             EEEEEETTTCSEEEEEEE------SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTC
T ss_pred             eEEeecCccceeeEEEec------CCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCC
Confidence             34577776666555421      124567899999999988776542 1111100000           0001111111


Q ss_pred             cc------ccEEEeC-CCCceEEeccCCCCEEEEEEcCC-CeE-EEEECCCcEEEEeCCC
Q 006825          547 VV------PETVFAL-SDKPICSFQGHLDDVLDLSWSKS-QHL-LSSSMDKTVRLWHLSS  597 (630)
Q Consensus       547 i~------~~~Vwdl-sgk~l~tL~GHs~~V~sLafSPd-~~L-aSgS~DgtVrIWDl~t  597 (630)
                      ..      ...++.. ..+.++.+..+.. ...+.++|| +++ +++..|++|.|||+.+
T Consensus       231 ~~~v~~~~v~vvd~~~~~~v~~~IPvgks-PhGv~vSPDGkyl~~~~~~~~tvsv~d~~k  289 (441)
T d1qnia2         231 FKTIGDSKVPVVDGRGESEFTRYIPVPKN-PHGLNTSPDGKYFIANGKLSPTVSVIAIDK  289 (441)
T ss_dssp             CBCCTTCCCCEEECSSSCSSEEEECCBSS-CCCEEECTTSCEEEEECTTSSBEEEEEGGG
T ss_pred             EEEeCCCCcEEEEcccCCceEEEEeCCCC-ccCceECCCCCEEEEeCCcCCcEEEEEeeh
Confidence            10      1145554 4456777766554 478999999 765 5778899999999865

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.24  E-value=3.6e-05  Score=76.20  Aligned_cols=126  Identities=13%  Similarity=0.028  Sum_probs=85.5

Q ss_pred             CCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccc
Q 006825          366 SSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTA  445 (630)
Q Consensus       366 ~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~  445 (630)
                      +...+.+.++..++  .+..+|++|||+++++                             ...+++|+.|+....    
T Consensus        15 ~~~~~v~~~~p~~~--~~e~iAv~pdG~l~vt-----------------------------~~~~~~I~~i~p~g~----   59 (302)
T d2p4oa1          15 LAPAKIITSFPVNT--FLENLASAPDGTIFVT-----------------------------NHEVGEIVSITPDGN----   59 (302)
T ss_dssp             CCCEEEEEEECTTC--CEEEEEECTTSCEEEE-----------------------------ETTTTEEEEECTTCC----
T ss_pred             CCcccEEEECCCCC--CcCCEEECCCCCEEEE-----------------------------eCCCCEEEEEeCCCC----
Confidence            44455555565333  4788999999986643                             344667888876533    


Q ss_pred             eeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCC
Q 006825          446 LYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDN  525 (630)
Q Consensus       446 ~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg  525 (630)
                         ...+......+.+++|++||+++++...++.+.+|+..........+.  ..........+++.+++.++++.+..+
T Consensus        60 ---~~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~n~i~~~~~g~~~v~~~~~~  134 (302)
T d2p4oa1          60 ---QQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLL--TLPDAIFLNGITPLSDTQYLTADSYRG  134 (302)
T ss_dssp             ---EEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEE--ECTTCSCEEEEEESSSSEEEEEETTTT
T ss_pred             ---EEEEEcCCCCcceEEEcCCCCeEEEecCCceEEEEEecccccceeecc--ccCCccccceeEEccCCCEEeeccccc
Confidence               233455667899999999999999998888898888765432222110  123345578899999999998887777


Q ss_pred             eeeeec
Q 006825          526 HLEKKR  531 (630)
Q Consensus       526 ~I~i~~  531 (630)
                      .+...+
T Consensus       135 ~i~~~~  140 (302)
T d2p4oa1         135 AIWLID  140 (302)
T ss_dssp             EEEEEE
T ss_pred             cceeee
Confidence            664433

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.19  E-value=0.00054  Score=68.33  Aligned_cols=202  Identities=9%  Similarity=-0.063  Sum_probs=118.0

Q ss_pred             eecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCC-----------CCcc------ccCCcceEE
Q 006825          353 EGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDER-----------DTSS------EKGGRRSSS  415 (630)
Q Consensus       353 SgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~-----------dt~s------~~gh~~~Vs  415 (630)
                      +-...+.|. .|+..++.....+. ........++|.+||+++++...+.           ....      .........
T Consensus        56 ~D~~~g~I~-ri~p~g~~~~~~~~-~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~n  133 (319)
T d2dg1a1          56 LDVFEGNIF-KINPETKEIKRPFV-SHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCID  133 (319)
T ss_dssp             EETTTCEEE-EECTTTCCEEEEEE-CSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEE
T ss_pred             EECCCCEEE-EEECCCCeEEEEEe-CCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCceeeeeccCCCcccCCc
Confidence            334456666 67777766555554 5556778999999999877654321           0100      001112233


Q ss_pred             EeecCCCe-EEEecC-------CcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEE-EEEeCCCcEEEEECc
Q 006825          416 ATDDSQDV-SFHGQE-------RVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYL-ASAGEDCVIHVWQVV  486 (630)
Q Consensus       416 a~~~s~d~-l~Sgs~-------Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~L-ASgS~DgtIrVWDl~  486 (630)
                      .+.+.+++ ++.+..       .+.+..++...+.      +..+...-..-+.|+|+||++.| ++-+..+.|..|++.
T Consensus       134 d~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~------~~~~~~~~~~pnGia~s~dg~~lyvad~~~~~I~~~d~~  207 (319)
T d2dg1a1         134 DMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRT------VTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALE  207 (319)
T ss_dssp             EEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCC------EEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEEC
T ss_pred             ceeEEeccceeecccccccccCcceeEEEecccce------eEEEeeccceeeeeeeccccceEEEecccCCceEEEEEc
Confidence            44455555 433321       2334444443332      22232333456789999999865 555678899999986


Q ss_pred             CCc-eeeeeec--ccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeCCCCceEEe
Q 006825          487 ESE-RKGELLE--KQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSF  563 (630)
Q Consensus       487 tg~-~~~~l~~--~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL  563 (630)
                      ... .......  ............+++..+|.++++....+.|                       .+|+..|+.+.++
T Consensus       208 ~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V-----------------------~~~~p~G~~l~~i  264 (319)
T d2dg1a1         208 DDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRV-----------------------LVFNKRGYPIGQI  264 (319)
T ss_dssp             TTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEE-----------------------EEECTTSCEEEEE
T ss_pred             CCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEE-----------------------EEECCCCcEEEEE
Confidence            432 1111100  0011112234578999999999988888888                       6777788877776


Q ss_pred             c------cCCCCEEEEEEcCC-CeEEEEE
Q 006825          564 Q------GHLDDVLDLSWSKS-QHLLSSS  585 (630)
Q Consensus       564 ~------GHs~~V~sLafSPd-~~LaSgS  585 (630)
                      .      ++...+++++|.++ ..|+...
T Consensus       265 ~~P~~~~~~~~~~~~~~~~~~~~~~~~t~  293 (319)
T d2dg1a1         265 LIPGRDEGHMLRSTHPQFIPGTNQLIICS  293 (319)
T ss_dssp             ECTTGGGTCSCBCCEEEECTTSCEEEEEE
T ss_pred             eCCCcCCCcCceeeeEEEeCCCCEEEEEc
Confidence            4      45567899999987 5554443

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.18  E-value=0.00086  Score=65.10  Aligned_cols=166  Identities=5%  Similarity=0.029  Sum_probs=118.3

Q ss_pred             EecCCcEEEEEeCCCCcccceeeeeEe-cccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccCccc
Q 006825          426 HGQERVRVRQYGKSCKDLTALYKCQEI-QAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLN  504 (630)
Q Consensus       426 Sgs~Dg~VriWd~~~~el~~~~~v~tL-~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~  504 (630)
                      .......|+.++....      ....+ ..+......+++.++|+++++....+.+.+++.. ++.+..+-   ...+..
T Consensus        88 ~~~~~~~i~~~~~~g~------~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~-g~~~~~~g---~~~~~~  157 (279)
T d1q7fa_          88 ERSPTHQIQIYNQYGQ------FVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFG---CSKHLE  157 (279)
T ss_dssp             ECGGGCEEEEECTTSC------EEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEE---CTTTCS
T ss_pred             ccCCcccccccccccc------ceeecCCCcccccceeccccCCcEEEEeeccceeeEeccC-Cceeeccc---cccccc
Confidence            3445567777776433      12233 3355667899999999988888877888888764 44444431   234556


Q ss_pred             ceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeCCCCceEEec--cCCCCEEEEEEcCC-CeE
Q 006825          505 MLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQ--GHLDDVLDLSWSKS-QHL  581 (630)
Q Consensus       505 ~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL~--GHs~~V~sLafSPd-~~L  581 (630)
                      ....+++.+++.++++....+.|                       .+|+..|+.+.++.  |+......|++.++ +++
T Consensus       158 ~~~~i~~d~~g~i~v~d~~~~~V-----------------------~~~d~~G~~~~~~g~~g~~~~P~giavD~~G~i~  214 (279)
T d1q7fa_         158 FPNGVVVNDKQEIFISDNRAHCV-----------------------KVFNYEGQYLRQIGGEGITNYPIGVGINSNGEIL  214 (279)
T ss_dssp             SEEEEEECSSSEEEEEEGGGTEE-----------------------EEEETTCCEEEEESCTTTSCSEEEEEECTTCCEE
T ss_pred             ccceeeeccceeEEeeeccccce-----------------------eeeecCCceeeeecccccccCCcccccccCCeEE
Confidence            77888999999888887777777                       77888888888773  45667889999999 766


Q ss_pred             EEEEC-CCcEEEEeCCCCcEEEEEe---cCCceEEEE-cCCCcEEEEec
Q 006825          582 LSSSM-DKTVRLWHLSSKTCLKIFS---HSDYDISLV-DRLMLRFAYGA  625 (630)
Q Consensus       582 aSgS~-DgtVrIWDl~tg~~l~t~~---H~~~V~sVa-s~~~~~lAsgs  625 (630)
                      ++-.. ++.|.+|+ .+|+.+.++.   .....+.|+ .+++..+++..
T Consensus       215 Vad~~~~~~v~~f~-~~G~~~~~~~~~~~~~~p~~vav~~dG~l~V~~~  262 (279)
T d1q7fa_         215 IADNHNNFNLTIFT-QDGQLISALESKVKHAQCFDVALMDDGSVVLASK  262 (279)
T ss_dssp             EEECSSSCEEEEEC-TTSCEEEEEEESSCCSCEEEEEEETTTEEEEEET
T ss_pred             EEECCCCcEEEEEC-CCCCEEEEEeCCCCCCCEeEEEEeCCCcEEEEeC
Confidence            66554 55799998 5699888886   345678888 77777766554

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.16  E-value=0.00035  Score=67.33  Aligned_cols=140  Identities=6%  Similarity=-0.052  Sum_probs=93.2

Q ss_pred             cCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccc
Q 006825          457 GSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSI  536 (630)
Q Consensus       457 ~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~  536 (630)
                      .....|++.++|+++++-.....+.+++..........     ..-......+++.+++.++++......|         
T Consensus        98 ~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~-----~~~~~~p~~i~~~~~g~~~v~~~~~~~i---------  163 (260)
T d1rwia_          98 NYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLP-----FTGLNDPDGVAVDNSGNVYVTDTDNNRV---------  163 (260)
T ss_dssp             CSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECC-----CCSCCSCCEEEECTTCCEEEEEGGGTEE---------
T ss_pred             eecccccccccceeEeeccccccccccccccceeeeee-----ecccCCcceeeecCCCCEeeeccccccc---------
Confidence            46789999999998887766677777776543322211     1122344678999999988887777766         


Q ss_pred             cccccccCccccccEEEeCCCCceEEec-cCCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCCCcEEEEEe--cCCceEE
Q 006825          537 NRKSLSLDHMVVPETVFALSDKPICSFQ-GHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS--HSDYDIS  612 (630)
Q Consensus       537 ~~~s~s~d~~i~~~~Vwdlsgk~l~tL~-GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg~~l~t~~--H~~~V~s  612 (630)
                                    ..++..+.....+. ..-.....|++.++ .++++....+.|..++..... ...+.  .-.....
T Consensus       164 --------------~~~d~~~~~~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~-~~~~~~~~~~~P~~  228 (260)
T d1rwia_         164 --------------VKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTT-STVLPFTGLNTPLA  228 (260)
T ss_dssp             --------------EEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCSC-CEECCCCSCCCEEE
T ss_pred             --------------cccccccceeeeeeccccCCCccceeeeeeeeeeeecCCCEEEEEeCCCCe-EEEEccCCCCCeEE
Confidence                          45555544444443 44556789999998 777777778888888765443 23333  4466788


Q ss_pred             EE-cCCCcEEEEec
Q 006825          613 LV-DRLMLRFAYGA  625 (630)
Q Consensus       613 Va-s~~~~~lAsgs  625 (630)
                      |+ ++++..+.+..
T Consensus       229 i~~d~~g~l~vad~  242 (260)
T d1rwia_         229 VAVDSDRTVYVADR  242 (260)
T ss_dssp             EEECTTCCEEEEEG
T ss_pred             EEEeCCCCEEEEEC
Confidence            88 76766666543

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.08  E-value=0.00056  Score=69.50  Aligned_cols=163  Identities=10%  Similarity=0.007  Sum_probs=90.6

Q ss_pred             ccceeEEEeec---ceEee-cCCCccEecccC-CCCceeE--Ee-cCCccCCEEEEEEcCCCCeEEeecCCCCCccccCC
Q 006825          339 SPIVQELMRRQ---NVEEG-NKDSFDLNNNGS-SGGGMKS--KK-KGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGG  410 (630)
Q Consensus       339 s~~V~~Lafs~---~laSg-S~D~tvr~vWD~-~tG~~~~--~l-k~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh  410 (630)
                      .+-+..++|+|   +++.. .....|. +|+. .+|....  .. ........+.++|+|+|+++.              
T Consensus       144 ~~h~h~v~~sPdG~~l~v~d~g~d~v~-~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~y--------------  208 (365)
T d1jofa_         144 NTGIHGMVFDPTETYLYSADLTANKLW-THRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLY--------------  208 (365)
T ss_dssp             TCCEEEEEECTTSSEEEEEETTTTEEE-EEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEE--------------
T ss_pred             CCcceEEEECCCCCEEEEeeCCCCEEE-EEEccCCCceeeccceeecCCCCceEEEEECCCCceEE--------------
Confidence            34478999999   34433 3334565 5543 3443321  11 113456788899999998764              


Q ss_pred             cceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEe--------------cccCcCEEEEEEccCCCEEEEEeC
Q 006825          411 RRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEI--------------QAHNGSIWSIKFSLDGRYLASAGE  476 (630)
Q Consensus       411 ~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL--------------~gHt~~V~sVaFSpDG~~LASgS~  476 (630)
                                    ++...+.+|.+|+............+.+              ..+......|.|+|||++|+++..
T Consensus       209 --------------v~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr  274 (365)
T d1jofa_         209 --------------ALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSR  274 (365)
T ss_dssp             --------------EEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEE
T ss_pred             --------------EeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcc
Confidence                          3344456677777654433222222221              123345678999999999888742


Q ss_pred             -C-----CcEEEEECcCCceeeeee-cccccCcccceEEEEECC-CCCEEEEe-eCCCeeeee
Q 006825          477 -D-----CVIHVWQVVESERKGELL-EKQEDGHLNMLLLANGSP-EPTSLSPK-HLDNHLEKK  530 (630)
Q Consensus       477 -D-----gtIrVWDl~tg~~~~~l~-~~~~~gh~~~V~svafSp-dg~~lasg-s~Dg~I~i~  530 (630)
                       +     ..|-+|++.....+.... .............++++| +|++|+.+ ..++.|.+|
T Consensus       275 ~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~  337 (365)
T d1jofa_         275 ANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIY  337 (365)
T ss_dssp             ESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEE
T ss_pred             cCCCccceEEEEEEecCCCceeeEeEeeEEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEE
Confidence             1     237777765433222211 111112223456788998 78977665 566778433

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=97.99  E-value=0.00046  Score=67.86  Aligned_cols=215  Identities=7%  Similarity=-0.066  Sum_probs=126.3

Q ss_pred             ceeEEEeec---ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCc---------c--
Q 006825          341 IVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTS---------S--  406 (630)
Q Consensus       341 ~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~---------s--  406 (630)
                      .+..+++.|   .+++...+++|. .|+.. |+ ...+. .....+.++||+++|+++++...+....         .  
T Consensus        29 ~~e~iAv~pdG~l~vt~~~~~~I~-~i~p~-g~-~~~~~-~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~  104 (302)
T d2p4oa1          29 FLENLASAPDGTIFVTNHEVGEIV-SITPD-GN-QQIHA-TVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVE  104 (302)
T ss_dssp             CEEEEEECTTSCEEEEETTTTEEE-EECTT-CC-EEEEE-ECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEE
T ss_pred             CcCCEEECCCCCEEEEeCCCCEEE-EEeCC-CC-EEEEE-cCCCCcceEEEcCCCCeEEEecCCceEEEEEeccccccee
Confidence            466788887   567777788877 67754 33 22333 4567789999999999888765443110         0  


Q ss_pred             ---ccCCcceEEEeecCCCe--EEEecCCcEEEEEeCCCCcccceee-----eeEecccCcCEEEEEEccCCCEEEEEeC
Q 006825          407 ---EKGGRRSSSATDDSQDV--SFHGQERVRVRQYGKSCKDLTALYK-----CQEIQAHNGSIWSIKFSLDGRYLASAGE  476 (630)
Q Consensus       407 ---~~gh~~~Vsa~~~s~d~--l~Sgs~Dg~VriWd~~~~el~~~~~-----v~tL~gHt~~V~sVaFSpDG~~LASgS~  476 (630)
                         ..........+.+.+++  +++-...+.++.++...........     ..........+..+.+.. +.++++...
T Consensus       105 ~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~-~~l~~~~~~  183 (302)
T d2p4oa1         105 TLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFG-NFLYVSNTE  183 (302)
T ss_dssp             EEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEET-TEEEEEETT
T ss_pred             eccccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCcccccccccccC-CceeeecCC
Confidence               11122334555666666  4555677888888876553211000     000112223456677653 345666678


Q ss_pred             CCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeCC
Q 006825          477 DCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALS  556 (630)
Q Consensus       477 DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdls  556 (630)
                      .+.|..+++..........   ..........+++.++|.++++...++.|                       ..++..
T Consensus       184 ~~~i~~~~~~~~~~~~~~~---~~~~~~~pdgia~d~dG~l~va~~~~~~V-----------------------~~i~p~  237 (302)
T d2p4oa1         184 KMLLLRIPVDSTDKPGEPE---IFVEQTNIDDFAFDVEGNLYGATHIYNSV-----------------------VRIAPD  237 (302)
T ss_dssp             TTEEEEEEBCTTSCBCCCE---EEEESCCCSSEEEBTTCCEEEECBTTCCE-----------------------EEECTT
T ss_pred             CCeEEeccccccccccccc---cccCCCCCcceEECCCCCEEEEEcCCCcE-----------------------EEECCC
Confidence            8888888876544332211   01112334568999999988888777777                       555556


Q ss_pred             CCceEEe--ccCCCCEEEEEE---cCC-CeEEEEEC
Q 006825          557 DKPICSF--QGHLDDVLDLSW---SKS-QHLLSSSM  586 (630)
Q Consensus       557 gk~l~tL--~GHs~~V~sLaf---SPd-~~LaSgS~  586 (630)
                      ++.....  ...-...++++|   .+| +.|..++.
T Consensus       238 G~~~~~~~~~~~~~~pt~vafg~~~~D~~~Lyvtt~  273 (302)
T d2p4oa1         238 RSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTN  273 (302)
T ss_dssp             CCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEEC
T ss_pred             CCEEEEEecCCCCCCceEEEEcCCCCCCCEEEEECC
Confidence            6543333  334456899999   667 66654443

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=97.90  E-value=0.0038  Score=61.92  Aligned_cols=118  Identities=8%  Similarity=0.066  Sum_probs=80.8

Q ss_pred             cCEEEEEEccCCC-----EEEEEeCCCcEEEEECcCCceeee--eecccccCcccceEEEEECCCCCEEEEeeCCCeeee
Q 006825          457 GSIWSIKFSLDGR-----YLASAGEDCVIHVWQVVESERKGE--LLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEK  529 (630)
Q Consensus       457 ~~V~sVaFSpDG~-----~LASgS~DgtIrVWDl~tg~~~~~--l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i  529 (630)
                      ..-+.|+|+|++.     ++++-+..+.|..|++.....+..  +..............+++..+|+++++....+.|  
T Consensus       172 ~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~I--  249 (314)
T d1pjxa_         172 QFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHI--  249 (314)
T ss_dssp             SSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEE--
T ss_pred             ceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcCCCEE--
Confidence            3456899999774     556667788899888764433221  1101011122345678999999998887777777  


Q ss_pred             ecccccccccccccCccccccEEEeCC-CCceEEeccCCCCEEEEEEcCC-C-eEEEEECCCcEEEEeCCC
Q 006825          530 KRRGRSINRKSLSLDHMVVPETVFALS-DKPICSFQGHLDDVLDLSWSKS-Q-HLLSSSMDKTVRLWHLSS  597 (630)
Q Consensus       530 ~~~~~~~~~~s~s~d~~i~~~~Vwdls-gk~l~tL~GHs~~V~sLafSPd-~-~LaSgS~DgtVrIWDl~t  597 (630)
                                           .+|+.. ++.+..+..+...+++++|.|+ + +++|.+..++|...++..
T Consensus       250 ---------------------~~~dp~~g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~~  299 (314)
T d1pjxa_         250 ---------------------EVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR  299 (314)
T ss_dssp             ---------------------EEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred             ---------------------EEEeCCCCEEEEEEECCCCCEEEEEEeCCCCEEEEEECCCCcEEEEECCC
Confidence                                 677764 5566667777778899999998 4 668888889888887653

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.81  E-value=0.0037  Score=59.77  Aligned_cols=188  Identities=9%  Similarity=-0.036  Sum_probs=110.3

Q ss_pred             eEEEeec---ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeec
Q 006825          343 QELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDD  419 (630)
Q Consensus       343 ~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~  419 (630)
                      ..|++.+   ..++......++ +++..++.....  ..-......||+.++|++.+.-                     
T Consensus        60 ~gvav~~~g~i~v~d~~~~~i~-~~~~~~~~~~~~--~~~~~~p~~iavd~~g~i~v~d---------------------  115 (260)
T d1rwia_          60 QGLAVDGAGTVYVTDFNNRVVT-LAAGSNNQTVLP--FDGLNYPEGLAVDTQGAVYVAD---------------------  115 (260)
T ss_dssp             CCEEECTTCCEEEEETTTEEEE-ECTTCSCCEECC--CCSCCSEEEEEECTTCCEEEEE---------------------
T ss_pred             eEEEEcCCCCEEEeeeeeceee-eeeeccceeeee--eeeeeecccccccccceeEeec---------------------
Confidence            3455544   244444445555 555544443322  2345667888988888765431                     


Q ss_pred             CCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeecccc
Q 006825          420 SQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQE  499 (630)
Q Consensus       420 s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~  499 (630)
                              .....+..++.......    .....+ ......|++.++|+++++...++.|..++.........     .
T Consensus       116 --------~~~~~~~~~~~~~~~~~----~~~~~~-~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~~~~~-----~  177 (260)
T d1rwia_         116 --------RGNNRVVKLAAGSKTQT----VLPFTG-LNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVL-----P  177 (260)
T ss_dssp             --------GGGTEEEEECTTCSSCE----ECCCCS-CCSCCEEEECTTCCEEEEEGGGTEEEEECTTTCCEEEC-----C
T ss_pred             --------cccccccccccccceee----eeeecc-cCCcceeeecCCCCEeeeccccccccccccccceeeee-----e
Confidence                    12233445544333211    111111 23446899999999999888889999999865443322     1


Q ss_pred             cCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeCCCCceEEec-cCCCCEEEEEEcCC
Q 006825          500 DGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQ-GHLDDVLDLSWSKS  578 (630)
Q Consensus       500 ~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL~-GHs~~V~sLafSPd  578 (630)
                      .........+++.++|.++++....+.|                       ..+...+.....+. ..-.....|++.++
T Consensus       178 ~~~~~~p~gi~~d~~g~l~vsd~~~~~i-----------------------~~~~~~~~~~~~~~~~~~~~P~~i~~d~~  234 (260)
T d1rwia_         178 FTDITAPWGIAVDEAGTVYVTEHNTNQV-----------------------VKLLAGSTTSTVLPFTGLNTPLAVAVDSD  234 (260)
T ss_dssp             CSSCCSEEEEEECTTCCEEEEETTTTEE-----------------------EEECTTCSCCEECCCCSCCCEEEEEECTT
T ss_pred             ccccCCCccceeeeeeeeeeeecCCCEE-----------------------EEEeCCCCeEEEEccCCCCCeEEEEEeCC
Confidence            2344556789999999998888777766                       23333333322222 22345689999998


Q ss_pred             -CeEEEEECCCcEEEEeC
Q 006825          579 -QHLLSSSMDKTVRLWHL  595 (630)
Q Consensus       579 -~~LaSgS~DgtVrIWDl  595 (630)
                       .++++-..++.|+..+.
T Consensus       235 g~l~vad~~~~rI~~i~~  252 (260)
T d1rwia_         235 RTVYVADRGNDRVVKLTS  252 (260)
T ss_dssp             CCEEEEEGGGTEEEEECC
T ss_pred             CCEEEEECCCCEEEEEeC
Confidence             77777666776665543

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.81  E-value=0.0025  Score=67.08  Aligned_cols=219  Identities=7%  Similarity=-0.049  Sum_probs=105.4

Q ss_pred             EEEEEcCCCCeEEeecCCC-CCcc-----ccC-CcceEEEeecCCCeEEEecCCcEEEEEeCCCCccccee-eeeEeccc
Q 006825          384 RTVASSVTGHKERRSSDER-DTSS-----EKG-GRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALY-KCQEIQAH  455 (630)
Q Consensus       384 ~sVAfSpdG~~lasgS~D~-dt~s-----~~g-h~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~-~v~tL~gH  455 (630)
                      .++.|||||++||....|. ....     ..+ ....+........+  ......++.++++..+...... .......+
T Consensus       176 ~a~~WSPDgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G--~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~  253 (465)
T d1xfda1         176 IAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAG--SENPSISLHVIGLNGPTHDLEMMPPDDPRMR  253 (465)
T ss_dssp             EEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTT--SCCCEEEEEEEESSSSCCCEECCCCCCGGGS
T ss_pred             ceEEECCCCCeEEEEEecccccceeecccccccccceeeeeeccccC--CCCCceeEEEEecCCCcEEEEEeccCcCccc
Confidence            4788999999999876543 1110     000 01111111111111  0112346888888765422111 01112234


Q ss_pred             CcCEEEEEEccCCCEEEEEe-CC---CcEEEEECcCCceeeeeecccccCccc-ceEEEEECCCCCEEEE--ee-CCC--
Q 006825          456 NGSIWSIKFSLDGRYLASAG-ED---CVIHVWQVVESERKGELLEKQEDGHLN-MLLLANGSPEPTSLSP--KH-LDN--  525 (630)
Q Consensus       456 t~~V~sVaFSpDG~~LASgS-~D---gtIrVWDl~tg~~~~~l~~~~~~gh~~-~V~svafSpdg~~las--gs-~Dg--  525 (630)
                      ...+..+.|++++++++... .+   ..|.++|+.++++...+... ..+... .-....|+|+|+.++.  .+ .++  
T Consensus       254 ~~y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~e~-~~~wv~~~~~~p~~~~dg~~~~fi~~se~~g~~  332 (465)
T d1xfda1         254 EYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDE-SEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRG  332 (465)
T ss_dssp             SEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEE-CSSCCCCCCCCCEECTTSCSEEEEEEECCSSSS
T ss_pred             cceeeeeEEcCCCeEEEEEEccccccceEEEEcCCCCcEEEEEEEc-CCceEeccCCceeEccCCCeeEEEEeeeecccC
Confidence            44688899999998766643 22   35788999988765443211 111111 1124567888874332  21 121  


Q ss_pred             ee-eeecc-------ccccc-c----------cccccCcccc----------ccEEEeC--CCCc-eEEe---ccCCCCE
Q 006825          526 HL-EKKRR-------GRSIN-R----------KSLSLDHMVV----------PETVFAL--SDKP-ICSF---QGHLDDV  570 (630)
Q Consensus       526 ~I-~i~~~-------~~~~~-~----------~s~s~d~~i~----------~~~Vwdl--sgk~-l~tL---~GHs~~V  570 (630)
                      .+ .+...       +.... +          ..+..+...+          ...+|.+  .|.. ...+   ..+....
T Consensus       333 ~ly~~~~~~~~~~~~~~~~~~LT~G~w~V~~i~~~d~~~~~vyF~a~~~~p~~~hly~v~l~g~~~~~~lt~~~~~~~~~  412 (465)
T d1xfda1         333 KFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTY  412 (465)
T ss_dssp             CEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCC
T ss_pred             ceEEEEeccccccCCCceeEEeccCCceEEEEEEEcCCCCEEEEEEeCCCCCceEEEEEECCCCCcceeeccccCCCCCE
Confidence            11 11100       00000 0          0011111100          0123333  1111 1111   1233456


Q ss_pred             EEEEEcCC-CeEEEEEC---CCcEEEEeCCCCcEEEEEe
Q 006825          571 LDLSWSKS-QHLLSSSM---DKTVRLWHLSSKTCLKIFS  605 (630)
Q Consensus       571 ~sLafSPd-~~LaSgS~---DgtVrIWDl~tg~~l~t~~  605 (630)
                      ..+.|||+ ++++-.+.   --.+.|++..+++.+..+.
T Consensus       413 ~~~~~S~~~~y~v~~~s~~~~P~~~~~~~~~~~~~~~Le  451 (465)
T d1xfda1         413 FSASFSHSMDFFLLKCEGPGVPMVTVHNTTDKKKMFDLE  451 (465)
T ss_dssp             CEEEECTTSSEEEEECCSSSSCCEEEEETTTCCEEEEEE
T ss_pred             EEEEECCCCCEEEEEeecCCCCeEEEEECCCCCEEEEEc
Confidence            79999999 88773333   3678999999999999886

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.74  E-value=0.00038  Score=73.52  Aligned_cols=225  Identities=10%  Similarity=-0.042  Sum_probs=126.2

Q ss_pred             CCCccEecccCCCCceeEEecC--CccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCcEE
Q 006825          356 KDSFDLNNNGSSGGGMKSKKKG--SWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRV  433 (630)
Q Consensus       356 ~D~tvr~vWD~~tG~~~~~lk~--gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~V  433 (630)
                      .|+.+. +||+.+++....+..  -..-.+....|||||++++-..+-+                    .++--+..+.+
T Consensus        35 ~~g~i~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~--------------------~~~r~s~~~~~   93 (465)
T d1xfda1          35 QKGTVR-LWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVE--------------------PIYQHSYTGYY   93 (465)
T ss_dssp             SSSCEE-EBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCC--------------------CCSSSCCCSEE
T ss_pred             CCCcEE-EEECCCCCEEEEEcCccccccccceeEECCCCCeEEEEEccc--------------------ceeEeeccccE
Confidence            456777 999998876544432  1223566788999999876432211                    01222345678


Q ss_pred             EEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeeccc----ccCcc------
Q 006825          434 RQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQ----EDGHL------  503 (630)
Q Consensus       434 riWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~----~~gh~------  503 (630)
                      .+||+.+++...   +.........+.-..|||||+.||-.. ++.|.+.+..++..++......    +.|..      
T Consensus        94 ~i~d~~~~~~~~---l~~~~~~~~~l~~~~wSPDG~~iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyee  169 (465)
T d1xfda1          94 VLSKIPHGDPQS---LDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEE  169 (465)
T ss_dssp             EEEESSSCCCEE---CCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHH
T ss_pred             EEEEccCCceee---ccCccCCccccceeeeccCCceEEEEe-cceEEEEecCCCceEEEecccCcceeeccccchhhhh
Confidence            999998876432   212233445566789999999998866 6788888887776554432110    01111      


Q ss_pred             ---cceEEEEECCCCCEEEEeeCC-Ceeeeecccc---c--cccccc--ccCcc---ccccEEEeCCCCceEEe------
Q 006825          504 ---NMLLLANGSPEPTSLSPKHLD-NHLEKKRRGR---S--INRKSL--SLDHM---VVPETVFALSDKPICSF------  563 (630)
Q Consensus       504 ---~~V~svafSpdg~~lasgs~D-g~I~i~~~~~---~--~~~~s~--s~d~~---i~~~~Vwdlsgk~l~tL------  563 (630)
                         ..-..+-|+|||+.|+....| ..+..+....   .  ......  ...+.   ...-.++++.+......      
T Consensus       170 e~~~~~~a~~WSPDgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~~~  249 (465)
T d1xfda1         170 EILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDD  249 (465)
T ss_dssp             TTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCC
T ss_pred             hhccccceEEECCCCCeEEEEEecccccceeecccccccccceeeeeeccccCCCCCceeEEEEecCCCcEEEEEeccCc
Confidence               112467799999999987544 3332222111   0  000000  00011   01125666643322111      


Q ss_pred             -ccCCCCEEEEEEcCC-CeEEEE-ECC---CcEEEEeCCCCcEEEEEe
Q 006825          564 -QGHLDDVLDLSWSKS-QHLLSS-SMD---KTVRLWHLSSKTCLKIFS  605 (630)
Q Consensus       564 -~GHs~~V~sLafSPd-~~LaSg-S~D---gtVrIWDl~tg~~l~t~~  605 (630)
                       ......+..+.|+|+ .+++.. ..+   ..|.++|+.+|++...+.
T Consensus       250 ~~~~~~y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~  297 (465)
T d1xfda1         250 PRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHE  297 (465)
T ss_dssp             GGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEE
T ss_pred             CccccceeeeeEEcCCCeEEEEEEccccccceEEEEcCCCCcEEEEEE
Confidence             122334788999999 544433 222   368889999998877665

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.74  E-value=0.012  Score=57.69  Aligned_cols=227  Identities=10%  Similarity=-0.008  Sum_probs=135.9

Q ss_pred             EEEEECCCCcEEEEeeecCCCceeEEEEcCCCceEeeecceeeecCccceeEEEeec--ceEeecCCCccEecccCCCCc
Q 006825          293 CLIKNLDNGKEFVVNEIQEDGTWKKVKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQ--NVEEGNKDSFDLNNNGSSGGG  370 (630)
Q Consensus       293 ~~I~~LddG~~~~v~e~~~dg~~~~l~dv~TG~~lt~eef~~l~GHs~~V~~Lafs~--~laSgS~D~tvr~vWD~~tG~  370 (630)
                      .-+|+-++|+.+.|+..+.  . ..-++..+|+.....    +   ...+..+++.+  .|..++.++ +. ++|..+|+
T Consensus        22 gp~wd~~~~~l~wvDi~~~--~-I~r~d~~~g~~~~~~----~---~~~~~~i~~~~dg~l~va~~~g-l~-~~d~~tg~   89 (295)
T d2ghsa1          22 GPTFDPASGTAWWFNILER--E-LHELHLASGRKTVHA----L---PFMGSALAKISDSKQLIASDDG-LF-LRDTATGV   89 (295)
T ss_dssp             EEEEETTTTEEEEEEGGGT--E-EEEEETTTTEEEEEE----C---SSCEEEEEEEETTEEEEEETTE-EE-EEETTTCC
T ss_pred             CCeEECCCCEEEEEECCCC--E-EEEEECCCCeEEEEE----C---CCCcEEEEEecCCCEEEEEeCc-cE-Eeecccce
Confidence            5679999999888865422  2 334677787654221    1   12456777766  444455554 55 78988887


Q ss_pred             eeEEecC---CccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCccccee
Q 006825          371 MKSKKKG---SWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALY  447 (630)
Q Consensus       371 ~~~~lk~---gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~  447 (630)
                      .......   .-...++.+++.|+|.+.++......                         ....-.+|....+++    
T Consensus        90 ~~~l~~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~-------------------------~~~~g~l~~~~~g~~----  140 (295)
T d2ghsa1          90 LTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKA-------------------------ETGAGSIYHVAKGKV----  140 (295)
T ss_dssp             EEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTC-------------------------CTTCEEEEEEETTEE----
T ss_pred             eeEEeeeecCCCcccceeeEECCCCCEEEEeccccc-------------------------cccceeEeeecCCcE----
Confidence            5443321   11235778888998886554221110                         001112232222221    


Q ss_pred             eeeEecccCcCEEEEEEccCCCEE-EEEeCCCcEEEEECcCCc--ee--eeeecccccCcccceEEEEECCCCCEEEEee
Q 006825          448 KCQEIQAHNGSIWSIKFSLDGRYL-ASAGEDCVIHVWQVVESE--RK--GELLEKQEDGHLNMLLLANGSPEPTSLSPKH  522 (630)
Q Consensus       448 ~v~tL~gHt~~V~sVaFSpDG~~L-ASgS~DgtIrVWDl~tg~--~~--~~l~~~~~~gh~~~V~svafSpdg~~lasgs  522 (630)
                        ..+...-..-+.++|+++++.| ++-+..+.|..+++....  ..  ..+. ....+.......+++..+|.+.++.-
T Consensus       141 --~~~~~~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~-~~~~~~~g~pdG~~vD~~GnlWva~~  217 (295)
T d2ghsa1         141 --TKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVF-IDSTGIKGGMDGSVCDAEGHIWNARW  217 (295)
T ss_dssp             --EEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEE-EECTTSSSEEEEEEECTTSCEEEEEE
T ss_pred             --EEEeeccCCcceeeecCCCceEEEeecccceeeEeeecccccccccceEEE-eccCcccccccceEEcCCCCEEeeee
Confidence              1111223345789999999854 556677888888874221  11  1111 11233445677889999999888877


Q ss_pred             CCCeeeeecccccccccccccCccccccEEEeCCCCceEEeccCCCCEEEEEEc-CC--CeEEEEEC
Q 006825          523 LDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWS-KS--QHLLSSSM  586 (630)
Q Consensus       523 ~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL~GHs~~V~sLafS-Pd--~~LaSgS~  586 (630)
                      ..+.|                       ..|+..|+.+..+.-....+++++|- |+  .+++|.+.
T Consensus       218 ~~g~V-----------------------~~~dp~G~~~~~i~lP~~~~T~~~FGG~d~~~LyvTta~  261 (295)
T d2ghsa1         218 GEGAV-----------------------DRYDTDGNHIARYEVPGKQTTCPAFIGPDASRLLVTSAR  261 (295)
T ss_dssp             TTTEE-----------------------EEECTTCCEEEEEECSCSBEEEEEEESTTSCEEEEEEBC
T ss_pred             CCCce-----------------------EEecCCCcEeeEecCCCCceEEEEEeCCCCCEEEEEECC
Confidence            77777                       77888899998887777789999996 56  45566554

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.17  E-value=0.093  Score=50.90  Aligned_cols=196  Identities=8%  Similarity=-0.061  Sum_probs=112.2

Q ss_pred             CccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCcEEEEEe
Q 006825          358 SFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYG  437 (630)
Q Consensus       358 ~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd  437 (630)
                      ++|. -||.++|+... +.  .-..+.++++.++|.+++.                              ..+ .|.++|
T Consensus        40 ~~I~-r~d~~~g~~~~-~~--~~~~~~~i~~~~dg~l~va------------------------------~~~-gl~~~d   84 (295)
T d2ghsa1          40 RELH-ELHLASGRKTV-HA--LPFMGSALAKISDSKQLIA------------------------------SDD-GLFLRD   84 (295)
T ss_dssp             TEEE-EEETTTTEEEE-EE--CSSCEEEEEEEETTEEEEE------------------------------ETT-EEEEEE
T ss_pred             CEEE-EEECCCCeEEE-EE--CCCCcEEEEEecCCCEEEE------------------------------EeC-ccEEee
Confidence            4455 67777765432 22  1235667777777665542                              222 366777


Q ss_pred             CCCCcccceeeeeEecc--cCcCEEEEEEccCCCEEEEEeC----CCcEEEEECcCCceeeeeecccccCcccceEEEEE
Q 006825          438 KSCKDLTALYKCQEIQA--HNGSIWSIKFSLDGRYLASAGE----DCVIHVWQVVESERKGELLEKQEDGHLNMLLLANG  511 (630)
Q Consensus       438 ~~~~el~~~~~v~tL~g--Ht~~V~sVaFSpDG~~LASgS~----DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svaf  511 (630)
                      ..++++..+.   ....  ....++.+.+.|+|++.++...    .+.-.+|.+..++....+      ........++|
T Consensus        85 ~~tg~~~~l~---~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~------~~~~~~Ng~~~  155 (295)
T d2ghsa1          85 TATGVLTLHA---ELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLF------ADISIPNSICF  155 (295)
T ss_dssp             TTTCCEEEEE---CSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEE------EEESSEEEEEE
T ss_pred             cccceeeEEe---eeecCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEe------eccCCcceeee
Confidence            7766542211   1111  1235889999999997776542    234567777666543321      12234567899


Q ss_pred             CCCCCEEEE-eeCCCeeeeecccccccccccccCccccccEEEeCCCC--ceEEeccCCCCEEEEEEcCC-CeEEEEECC
Q 006825          512 SPEPTSLSP-KHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDK--PICSFQGHLDDVLDLSWSKS-QHLLSSSMD  587 (630)
Q Consensus       512 Spdg~~las-gs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk--~l~tL~GHs~~V~sLafSPd-~~LaSgS~D  587 (630)
                      +++++.+.. .+..+.|..++....         ...       ..++  ....+.+-......+++..+ ++.++.-..
T Consensus       156 s~d~~~l~~~dt~~~~I~~~~~d~~---------~~~-------~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~  219 (295)
T d2ghsa1         156 SPDGTTGYFVDTKVNRLMRVPLDAR---------TGL-------PTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGE  219 (295)
T ss_dssp             CTTSCEEEEEETTTCEEEEEEBCTT---------TCC-------BSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETT
T ss_pred             cCCCceEEEeecccceeeEeeeccc---------ccc-------cccceEEEeccCcccccccceEEcCCCCEEeeeeCC
Confidence            999886554 444555522221100         000       0011  11223334455778899888 666666677


Q ss_pred             CcEEEEeCCCCcEEEEEe-cCCceEEEE
Q 006825          588 KTVRLWHLSSKTCLKIFS-HSDYDISLV  614 (630)
Q Consensus       588 gtVrIWDl~tg~~l~t~~-H~~~V~sVa  614 (630)
                      +.|..|| ..|+.+..+. -...+++++
T Consensus       220 g~V~~~d-p~G~~~~~i~lP~~~~T~~~  246 (295)
T d2ghsa1         220 GAVDRYD-TDGNHIARYEVPGKQTTCPA  246 (295)
T ss_dssp             TEEEEEC-TTCCEEEEEECSCSBEEEEE
T ss_pred             CceEEec-CCCcEeeEecCCCCceEEEE
Confidence            8899999 4799999998 456789998

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=97.14  E-value=0.028  Score=52.25  Aligned_cols=86  Identities=15%  Similarity=0.090  Sum_probs=56.7

Q ss_pred             cEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEe----CCC--cEEEEECcCCceeeeee-cccccCcc
Q 006825          431 VRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAG----EDC--VIHVWQVVESERKGELL-EKQEDGHL  503 (630)
Q Consensus       431 g~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS----~Dg--tIrVWDl~tg~~~~~l~-~~~~~gh~  503 (630)
                      +.|+++++.+++.      +.|..+.+.+...+|||||++||-..    .+.  .|.++++.+++...... ........
T Consensus        21 ~dl~~~d~~~g~~------~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~lt~~~~~~~~~~   94 (281)
T d1k32a2          21 DDLWEHDLKSGST------RKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRITYFSGKSTGRR   94 (281)
T ss_dssp             TEEEEEETTTCCE------EEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEECCCCCEEEETTE
T ss_pred             CcEEEEECCCCCE------EEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEEeeecCCCccCcc
Confidence            4588889988753      45677888899999999999988653    222  36667776665443211 00111222


Q ss_pred             cceEEEEECCCCCEEEEee
Q 006825          504 NMLLLANGSPEPTSLSPKH  522 (630)
Q Consensus       504 ~~V~svafSpdg~~lasgs  522 (630)
                      .....+.|+|+|+.|+...
T Consensus        95 ~~~~~~~~spdg~~l~~~~  113 (281)
T d1k32a2          95 MFTDVAGFDPDGNLIISTD  113 (281)
T ss_dssp             ECSEEEEECTTCCEEEEEC
T ss_pred             ccccccccCCCCCEEEEEE
Confidence            3456788999999888653

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=97.04  E-value=0.022  Score=53.03  Aligned_cols=100  Identities=12%  Similarity=0.012  Sum_probs=58.0

Q ss_pred             cc--cCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecC--CcEEEEEeC
Q 006825          363 NN--GSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQE--RVRVRQYGK  438 (630)
Q Consensus       363 vW--D~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~--Dg~VriWd~  438 (630)
                      ||  |+.+|+.. .+. .+...+...+|||||++||-....                         ...  ...|.+++.
T Consensus        23 l~~~d~~~g~~~-~Lt-~~~~~~~~p~~SPDG~~iaf~~~~-------------------------~~~~~~~~i~~~~~   75 (281)
T d1k32a2          23 LWEHDLKSGSTR-KIV-SNLGVINNARFFPDGRKIAIRVMR-------------------------GSSLNTADLYFYNG   75 (281)
T ss_dssp             EEEEETTTCCEE-EEE-CSSSEEEEEEECTTSSEEEEEEEE-------------------------STTCCEEEEEEEET
T ss_pred             EEEEECCCCCEE-EEe-cCCCcccCEEECCCCCEEEEEEee-------------------------CCCCCceEEEEEEe
Confidence            55  77777654 555 567788999999999998732211                         111  124677777


Q ss_pred             CCCcccceee-eeEecccCcCEEEEEEccCCCEEEEEeC------CCcEEEEECcCCc
Q 006825          439 SCKDLTALYK-CQEIQAHNGSIWSIKFSLDGRYLASAGE------DCVIHVWQVVESE  489 (630)
Q Consensus       439 ~~~el~~~~~-v~tL~gHt~~V~sVaFSpDG~~LASgS~------DgtIrVWDl~tg~  489 (630)
                      .+++...+.. .....+.......+.|+|||+.|+....      ...+.+++...+.
T Consensus        76 ~~g~~~~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~  133 (281)
T d1k32a2          76 ENGEIKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGIN  133 (281)
T ss_dssp             TTTEEEECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTE
T ss_pred             cCCceEEeeecCCCccCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCce
Confidence            6664322110 0011223345678899999999887532      2234455554443

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=97.02  E-value=0.12  Score=50.56  Aligned_cols=144  Identities=8%  Similarity=0.023  Sum_probs=84.6

Q ss_pred             ecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCC--CcEEEE--ECcCCceeeeeecccccCc
Q 006825          427 GQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGED--CVIHVW--QVVESERKGELLEKQEDGH  502 (630)
Q Consensus       427 gs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~D--gtIrVW--Dl~tg~~~~~l~~~~~~gh  502 (630)
                      -...++|+.|+..+++.     ...+.........|+|++||+++++...+  ....++  +.......... .  ...-
T Consensus        57 D~~~g~I~ri~p~g~~~-----~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~~~~~~-~--~~~~  128 (319)
T d2dg1a1          57 DVFEGNIFKINPETKEI-----KRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDII-E--DLST  128 (319)
T ss_dssp             ETTTCEEEEECTTTCCE-----EEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEE-C--SSSS
T ss_pred             ECCCCEEEEEECCCCeE-----EEEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCceeeeec-c--CCCc
Confidence            34567788888766542     22334455678899999999988875433  233344  44433322221 0  1112


Q ss_pred             ccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEE--eCCCCceEEeccCCCCEEEEEEcCC-C
Q 006825          503 LNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVF--ALSDKPICSFQGHLDDVLDLSWSKS-Q  579 (630)
Q Consensus       503 ~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vw--dlsgk~l~tL~GHs~~V~sLafSPd-~  579 (630)
                      ......+++.++|.++++........                   ....+|  +..++.+..+...-...+.|+|+|+ +
T Consensus       129 ~~~~nd~~~d~~G~l~vtd~~~~~~~-------------------~~g~v~~~~~dg~~~~~~~~~~~~pnGia~s~dg~  189 (319)
T d2dg1a1         129 AYCIDDMVFDSKGGFYFTDFRGYSTN-------------------PLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEK  189 (319)
T ss_dssp             CCCEEEEEECTTSCEEEEECCCBTTB-------------------CCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSS
T ss_pred             ccCCcceeEEeccceeeccccccccc-------------------CcceeEEEecccceeEEEeeccceeeeeeeccccc
Confidence            34467889999999877653221110                   000233  3345555554444445688999999 5


Q ss_pred             e-EEEEECCCcEEEEeCCC
Q 006825          580 H-LLSSSMDKTVRLWHLSS  597 (630)
Q Consensus       580 ~-LaSgS~DgtVrIWDl~t  597 (630)
                      . +++-+..+.|..|++..
T Consensus       190 ~lyvad~~~~~I~~~d~~~  208 (319)
T d2dg1a1         190 VLWVTETTANRLHRIALED  208 (319)
T ss_dssp             EEEEEEGGGTEEEEEEECT
T ss_pred             eEEEecccCCceEEEEEcC
Confidence            4 46777889999998753

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=96.88  E-value=0.16  Score=49.55  Aligned_cols=216  Identities=9%  Similarity=-0.006  Sum_probs=116.7

Q ss_pred             ccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcC
Q 006825          379 WFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGS  458 (630)
Q Consensus       379 H~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~  458 (630)
                      .......+||.++|++.++....                      -+.....++|..|+..+++..... ......-.+.
T Consensus        16 ~~~g~EGpa~d~dG~ly~~~~~~----------------------~~~~~~~g~I~r~d~~~~~~~~~~-~~~~~~~~g~   72 (314)
T d1pjxa_          16 DIPGAEGPVFDKNGDFYIVAPEV----------------------EVNGKPAGEILRIDLKTGKKTVIC-KPEVNGYGGI   72 (314)
T ss_dssp             CCTTCEEEEECTTSCEEEEETTC----------------------EETTEECCEEEEECTTTCCEEEEE-CCEETTEECC
T ss_pred             CCCCCeEeEEeCCCCEEEEECcc----------------------ccccccCCEEEEEECCCCcEEEEE-CCccccCCCc
Confidence            34445678899998866532111                      011112567888888776432111 0111112233


Q ss_pred             EEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccCc-ccceEEEEECCCCCEEEEeeCC-------------
Q 006825          459 IWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGH-LNMLLLANGSPEPTSLSPKHLD-------------  524 (630)
Q Consensus       459 V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh-~~~V~svafSpdg~~lasgs~D-------------  524 (630)
                      -..|+|.++|+.|+.+.....|...+........ + .....+. ......+++.++|.++++....             
T Consensus        73 P~Gl~~~~dg~~l~vad~~~~i~~~~~~g~~~~~-~-~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~  150 (314)
T d1pjxa_          73 PAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEI-A-KKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQE  150 (314)
T ss_dssp             EEEEEECSSSSEEEEEETTTEEEEEETTSCEEEC-C-SBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSS
T ss_pred             ceeEEEeCCCCEEEEEECCCeEEEEeCCCcEEEE-E-eccccccccCCCcEEEECCCCCEEEecCccCcccccccceecc
Confidence            5689999999988888777778888876543221 1 1111221 1235678999999988874321             


Q ss_pred             --Ceeeeeccccccc----------ccccccCc------ccc----ccEEEe--C--CCCc-----eEEecc-CCCCEEE
Q 006825          525 --NHLEKKRRGRSIN----------RKSLSLDH------MVV----PETVFA--L--SDKP-----ICSFQG-HLDDVLD  572 (630)
Q Consensus       525 --g~I~i~~~~~~~~----------~~s~s~d~------~i~----~~~Vwd--l--sgk~-----l~tL~G-Hs~~V~s  572 (630)
                        +.|..........          -..++.+.      .++    ..+||.  +  .+..     ...+.+ +....-.
T Consensus       151 ~~G~v~~~~~dg~~~~~~~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdG  230 (314)
T d1pjxa_         151 KFGSIYCFTTDGQMIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADG  230 (314)
T ss_dssp             SCEEEEEECTTSCEEEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEE
T ss_pred             CCceEEEEeecCceeEeeCCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEcccccccccee
Confidence              1221111110000          00111111      110    012222  1  1111     111222 1223457


Q ss_pred             EEEcCC-CeEEEEECCCcEEEEeCCCCcEEEEEe-cCCceEEEE-cCCCc
Q 006825          573 LSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYDISLV-DRLML  619 (630)
Q Consensus       573 LafSPd-~~LaSgS~DgtVrIWDl~tg~~l~t~~-H~~~V~sVa-s~~~~  619 (630)
                      |++..+ +++++....+.|.+||...++.+..+. ....+++++ .+++.
T Consensus       231 iavD~~GnlyVa~~~~g~I~~~dp~~g~~~~~i~~p~~~~t~~afg~d~~  280 (314)
T d1pjxa_         231 MDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTK  280 (314)
T ss_dssp             EEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSS
T ss_pred             eEEecCCcEEEEEcCCCEEEEEeCCCCEEEEEEECCCCCEEEEEEeCCCC
Confidence            888888 777777788999999999888877777 667788888 66664

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=95.04  E-value=0.83  Score=44.17  Aligned_cols=166  Identities=13%  Similarity=0.044  Sum_probs=84.7

Q ss_pred             CCCCcEEEEeeecCC------Cc--eeEEEEcCCCceEeeecceeeecCccceeEEEeec---ceEeecCC-CccEeccc
Q 006825          298 LDNGKEFVVNEIQED------GT--WKKVKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQ---NVEEGNKD-SFDLNNNG  365 (630)
Q Consensus       298 LddG~~~~v~e~~~d------g~--~~~l~dv~TG~~lt~eef~~l~GHs~~V~~Lafs~---~laSgS~D-~tvr~vWD  365 (630)
                      +.+||.+++.....+      +.  +..+||+.|++......  ....|.......++.+   .++.|+.+ .++. +||
T Consensus        28 ~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~--~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~-~yd  104 (387)
T d1k3ia3          28 PTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTV--TVTKHDMFCPGISMDGNGQIVVTGGNDAKKTS-LYD  104 (387)
T ss_dssp             TTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEE--EECSCCCSSCEEEECTTSCEEEECSSSTTCEE-EEE
T ss_pred             eeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCC--CCCCcccceeEEEEecCCcEEEeecCCCccee-Eec
Confidence            456776666443211      11  35578998887752221  1223333333444444   56666555 5667 999


Q ss_pred             CCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccc
Q 006825          366 SSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTA  445 (630)
Q Consensus       366 ~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~  445 (630)
                      ..+............+.--+++..+||+.++.|.....                       +..-..+.+||..+.+...
T Consensus       105 ~~~~~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~-----------------------~~~~~~v~~yd~~~~~W~~  161 (387)
T d1k3ia3         105 SSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSG-----------------------GVFEKNGEVYSPSSKTWTS  161 (387)
T ss_dssp             GGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCS-----------------------SSCCCCEEEEETTTTEEEE
T ss_pred             CccCcccccccccccccccceeeecCCceeeecccccc-----------------------ccccceeeeecCCCCceee
Confidence            98876544322122222235777788888776653320                       0111236677766554321


Q ss_pred             eeeee----EecccCc-----CEEEEEEccCCCEEEEEeCCCcEEEEECcCCc
Q 006825          446 LYKCQ----EIQAHNG-----SIWSIKFSLDGRYLASAGEDCVIHVWQVVESE  489 (630)
Q Consensus       446 ~~~v~----tL~gHt~-----~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~  489 (630)
                      +....    ....|..     .-..+..-++|+.++.++.+..+.+++..+..
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~  214 (387)
T d1k3ia3         162 LPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGD  214 (387)
T ss_dssp             ETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCE
T ss_pred             cCCCcccccccccccceeeccceeEEEEeCCCCEEEecCcCCcEEecCcccCc
Confidence            11000    0000110     01112334688888888888878887776654

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.11  E-value=6  Score=36.84  Aligned_cols=148  Identities=7%  Similarity=-0.088  Sum_probs=84.8

Q ss_pred             EEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEe-CCCcEEEEECc-CCceeeeeecccccCc
Q 006825          425 FHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAG-EDCVIHVWQVV-ESERKGELLEKQEDGH  502 (630)
Q Consensus       425 ~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS-~DgtIrVWDl~-tg~~~~~l~~~~~~gh  502 (630)
                      ++-....+|.+.++.....     ...+.........|++.|...+|.-.. .....+||-+. ++.....+.    ...
T Consensus        95 ~~d~~~~~I~~~~~dg~~~-----~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~----~~~  165 (263)
T d1npea_          95 WTDSQLDRIEVAKMDGTQR-----RVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILA----QDN  165 (263)
T ss_dssp             EEETTTTEEEEEETTSCSC-----EEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEE----CTT
T ss_pred             EeccCCCEEEEEecCCceE-----EEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCceeee----eec
Confidence            4555667888888765431     112233346789999999666555432 22344566432 233222321    222


Q ss_pred             ccceEEEEECCCCCEEEEe-eCCCeeeeecccccccccccccCccccccEEEeCCCCceEEe-ccCCCCEEEEEEcCCCe
Q 006825          503 LNMLLLANGSPEPTSLSPK-HLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSF-QGHLDDVLDLSWSKSQH  580 (630)
Q Consensus       503 ~~~V~svafSpdg~~lasg-s~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL-~GHs~~V~sLafSPd~~  580 (630)
                      ......+++.+....|..+ ...+.|                       ...++.|...+++ .+- .....|++..+.+
T Consensus       166 ~~~P~glaiD~~~~~lYw~d~~~~~I-----------------------~~~~~~g~~~~~v~~~~-~~P~~lav~~~~l  221 (263)
T d1npea_         166 LGLPNGLTFDAFSSQLCWVDAGTHRA-----------------------ECLNPAQPGRRKVLEGL-QYPFAVTSYGKNL  221 (263)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEE-----------------------EEEETTEEEEEEEEECC-CSEEEEEEETTEE
T ss_pred             ccccceEEEeecCcEEEEEeCCCCEE-----------------------EEEECCCCCeEEEECCC-CCcEEEEEECCEE
Confidence            3455688888776666544 344555                       3344444433332 222 2345788765455


Q ss_pred             EEEEECCCcEEEEeCCCCcEEEEEe
Q 006825          581 LLSSSMDKTVRLWHLSSKTCLKIFS  605 (630)
Q Consensus       581 LaSgS~DgtVrIWDl~tg~~l~t~~  605 (630)
                      +.+-...+.|...|..+++.+.++.
T Consensus       222 Ywtd~~~~~I~~~~~~~g~~~~~~~  246 (263)
T d1npea_         222 YYTDWKTNSVIAMDLAISKEMDTFH  246 (263)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEEC
T ss_pred             EEEECCCCEEEEEECCCCccceEEC
Confidence            5666678899999999999888774

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=83.49  E-value=17  Score=33.49  Aligned_cols=156  Identities=6%  Similarity=-0.057  Sum_probs=87.0

Q ss_pred             cEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEE-eCCCcEEEEECcCCceeeeeecccccCcccceEEE
Q 006825          431 VRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASA-GEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLA  509 (630)
Q Consensus       431 g~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASg-S~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~sv  509 (630)
                      +.|+...+.............+..+...|.+|+|.+..+.|.-. ..++.|+..++........+     ......+..+
T Consensus        10 ~~I~~~~ld~~~~~~~~~~~~~~~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~-----~~~~~~p~~i   84 (263)
T d1npea_          10 GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTII-----RQDLGSPEGI   84 (263)
T ss_dssp             EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEE-----CTTCCCEEEE
T ss_pred             CeEEEEECCCccccccccccccccCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEE-----EeccccccEE
Confidence            46776766554433333334455566678899999866655554 56688988888655433222     2223457788


Q ss_pred             EECCCCCEEE-EeeCCCeeeeecccccccccccccCccccccEEEeCCCCceEEecc-CCCCEEEEEEcCC-CeEE-EEE
Q 006825          510 NGSPEPTSLS-PKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQG-HLDDVLDLSWSKS-QHLL-SSS  585 (630)
Q Consensus       510 afSpdg~~la-sgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL~G-Hs~~V~sLafSPd-~~La-SgS  585 (630)
                      ++..-+..|. +-...+.|                       .+.++.++...++.. .-.....|++.|. ++|. +-.
T Consensus        85 AvD~~~~~lY~~d~~~~~I-----------------------~~~~~dg~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~  141 (263)
T d1npea_          85 ALDHLGRTIFWTDSQLDRI-----------------------EVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDW  141 (263)
T ss_dssp             EEETTTTEEEEEETTTTEE-----------------------EEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEEC
T ss_pred             EEeccCCeEEEeccCCCEE-----------------------EEEecCCceEEEEecccccCCcEEEEecccCcEEEeec
Confidence            8876555444 44444555                       455555554444432 2356788888887 6554 332


Q ss_pred             CCCcEEEE--eCCCCcEEEEEe-cCCceEEEE
Q 006825          586 MDKTVRLW--HLSSKTCLKIFS-HSDYDISLV  614 (630)
Q Consensus       586 ~DgtVrIW--Dl~tg~~l~t~~-H~~~V~sVa  614 (630)
                      ..+..+||  ++.......... .-.....|+
T Consensus       142 ~~~~~~I~r~~~dG~~~~~i~~~~~~~P~gla  173 (263)
T d1npea_         142 NRDNPKIETSHMDGTNRRILAQDNLGLPNGLT  173 (263)
T ss_dssp             CSSSCEEEEEETTSCCCEEEECTTCSCEEEEE
T ss_pred             CCCCcEEEEecCCCCCceeeeeecccccceEE
Confidence            22344455  343322222222 334556676

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=82.51  E-value=30  Score=35.61  Aligned_cols=28  Identities=11%  Similarity=0.064  Sum_probs=25.6

Q ss_pred             CCeEEEEECCCcEEEEeCCCCcEEEEEe
Q 006825          578 SQHLLSSSMDKTVRLWHLSSKTCLKIFS  605 (630)
Q Consensus       578 d~~LaSgS~DgtVrIWDl~tg~~l~t~~  605 (630)
                      .++++.|+.|+.++-+|.++|+.|..+.
T Consensus       475 gglVf~G~~dg~l~A~Da~tGe~lW~~~  502 (571)
T d2ad6a1         475 GGLVWYATLDGYLKALDNKDGKELWNFK  502 (571)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEE
Confidence            3788889999999999999999999886