Citrus Sinensis ID: 006826
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 630 | 2.2.26 [Sep-21-2011] | |||||||
| Q9FHN8 | 1260 | Kinesin-like calmodulin-b | no | no | 0.612 | 0.306 | 0.388 | 9e-69 | |
| Q07970 | 793 | Kinesin-1 OS=Arabidopsis | no | no | 0.576 | 0.457 | 0.406 | 3e-68 | |
| F4JGP4 | 790 | Kinesin-5 OS=Arabidopsis | no | no | 0.576 | 0.459 | 0.404 | 7e-68 | |
| Q9BVG8 | 833 | Kinesin-like protein KIFC | no | no | 0.553 | 0.418 | 0.410 | 1e-67 | |
| P46864 | 745 | Kinesin-2 OS=Arabidopsis | no | no | 0.576 | 0.487 | 0.409 | 5e-67 | |
| O35231 | 824 | Kinesin-like protein KIFC | no | no | 0.568 | 0.434 | 0.417 | 1e-66 | |
| P46875 | 754 | Kinesin-3 OS=Arabidopsis | no | no | 0.580 | 0.485 | 0.396 | 2e-66 | |
| O81635 | 987 | Kinesin-4 OS=Arabidopsis | no | no | 0.528 | 0.337 | 0.415 | 2e-62 | |
| Q7XPJ0 | 1248 | Kinesin-like calmodulin-b | no | no | 0.557 | 0.281 | 0.397 | 3e-62 | |
| P45962 | 598 | Kinesin-like protein klp- | yes | no | 0.511 | 0.538 | 0.386 | 1e-59 |
| >sp|Q9FHN8|KCBP_ARATH Kinesin-like calmodulin-binding protein OS=Arabidopsis thaliana GN=KCBP PE=1 SV=1 | Back alignment and function desciption |
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Score = 261 bits (668), Expect = 9e-69, Method: Compositional matrix adjust.
Identities = 161/414 (38%), Positives = 241/414 (58%), Gaps = 28/414 (6%)
Query: 16 ESTLES--SDGLPPVPDLPDSPPLPLICTDVNVVPEQQKNELEQSIINLEG-EIVELRLK 72
EST+ES SD L +L + L + D++ +KNE +I+ ++G ++ EL +
Sbjct: 813 ESTIESKNSDMLLLQNNLKELEELREMKEDID-----RKNEQTAAILKMQGAQLAELEIL 867
Query: 73 KRRLDEKRREALNKILDIKGCIRVFCRVRSFLVTGRRVIHEPVLTELEKVVVRS---GGS 129
+ R+ N I D+KG IRV+CR+R + +LT +++ V
Sbjct: 868 YKEEQVLRKRYYNTIEDMKGKIRVYCRIRPLNEKESSEREKQMLTTVDEFTVEHPWKDDK 927
Query: 130 KKEFGFDKVFNQAASQEDVFVEVEPILRSALDGHNVCVLAYGQTGTGKTFTMDGTSDQPG 189
+K+ +D+VF+ ASQ+D+F + + +++SA+DG+NVC+ AYGQTG+GKTFT+ G PG
Sbjct: 928 RKQHIYDRVFDMRASQDDIFEDTKYLVQSAVDGYNVCIFAYGQTGSGKTFTIYGHESNPG 987
Query: 190 IVPRALEELFRQAALDNSSSVTFSMS--MLEVYMGSVRDLLAPKPVFKAYEAATRCNLNI 247
+ PRA +ELF D S +FS+ M+E+Y ++ DLL PK +A R L I
Sbjct: 988 LTPRATKELFNILKRD-SKRFSFSLKAYMVELYQDTLVDLLLPK-------SARRLKLEI 1039
Query: 248 QTDAKGTVEIEGLTEVQIPDFTKARWWYNKGRRVRSTSWTNVNEASSRSHCLMRITIFRH 307
+ D+KG V +E +T + I + R +G R S TN+NE SSRSH ++ + I
Sbjct: 1040 KKDSKGMVFVENVTTIPISTLEELRMILERGSERRHVSGTNMNEESSRSHLILSVVI--- 1096
Query: 308 GDALEAKTEVS---KLWMVDLGGSERVLKTGATGQTLDEGRAINLSLSALADVIAALRRK 364
++++ +T+ + KL VDL GSERV K+G+ G L E ++IN SLSAL DVI AL
Sbjct: 1097 -ESIDLQTQSAARGKLSFVDLAGSERVKKSGSAGCQLKEAQSINKSLSALGDVIGALSSG 1155
Query: 365 RGHVPYRNSKLTQILRDSLGDGSKVLMLVHASPCEEDVGETICSLSFAKRARGI 418
H+PYRN KLT ++ DSLG +K LM V+ SP E ++ ET SL +A R R I
Sbjct: 1156 NQHIPYRNHKLTMLMSDSLGGNAKTLMFVNVSPAESNLDETYNSLLYASRVRTI 1209
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Minus-end microtubule-dependent motor protein involved in the regulation of cell division and trichome morphogenesis. Possesses basal and microtubule-stimulated ATPase activities. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q07970|ATK1_ARATH Kinesin-1 OS=Arabidopsis thaliana GN=ATK1 PE=2 SV=1 | Back alignment and function description |
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| >sp|F4JGP4|ATK5_ARATH Kinesin-5 OS=Arabidopsis thaliana GN=ATK5 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q9BVG8|KIFC3_HUMAN Kinesin-like protein KIFC3 OS=Homo sapiens GN=KIFC3 PE=1 SV=4 | Back alignment and function description |
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| >sp|P46864|ATK2_ARATH Kinesin-2 OS=Arabidopsis thaliana GN=ATK2 PE=2 SV=1 | Back alignment and function description |
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| >sp|O35231|KIFC3_MOUSE Kinesin-like protein KIFC3 OS=Mus musculus GN=Kifc3 PE=1 SV=4 | Back alignment and function description |
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| >sp|P46875|ATK3_ARATH Kinesin-3 OS=Arabidopsis thaliana GN=ATK3 PE=2 SV=1 | Back alignment and function description |
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| >sp|O81635|ATK4_ARATH Kinesin-4 OS=Arabidopsis thaliana GN=ATK4 PE=1 SV=2 | Back alignment and function description |
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| >sp|Q7XPJ0|KCBP_ORYSJ Kinesin-like calmodulin-binding protein homolog OS=Oryza sativa subsp. japonica GN=Os04g0666900 PE=2 SV=1 | Back alignment and function description |
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| >sp|P45962|KLP3_CAEEL Kinesin-like protein klp-3 OS=Caenorhabditis elegans GN=klp-3 PE=1 SV=1 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 630 | ||||||
| 225451199 | 640 | PREDICTED: kinesin-like calmodulin-bindi | 0.993 | 0.978 | 0.724 | 0.0 | |
| 224123306 | 637 | predicted protein [Populus trichocarpa] | 0.977 | 0.967 | 0.672 | 0.0 | |
| 13536981 | 633 | BY-2 kinesin-like protein 5 [Nicotiana t | 0.931 | 0.927 | 0.668 | 0.0 | |
| 356533623 | 642 | PREDICTED: kinesin-1-like [Glycine max] | 0.953 | 0.936 | 0.662 | 0.0 | |
| 449435750 | 607 | PREDICTED: kinesin-like protein KIFC3-li | 0.944 | 0.980 | 0.675 | 0.0 | |
| 449485800 | 607 | PREDICTED: LOW QUALITY PROTEIN: kinesin- | 0.944 | 0.980 | 0.673 | 0.0 | |
| 356574910 | 639 | PREDICTED: kinesin-1-like [Glycine max] | 0.949 | 0.935 | 0.661 | 0.0 | |
| 297808815 | 625 | hypothetical protein ARALYDRAFT_489620 [ | 0.950 | 0.958 | 0.631 | 0.0 | |
| 30690873 | 625 | kinesin motor protein-like protein [Arab | 0.966 | 0.974 | 0.627 | 0.0 | |
| 255542412 | 499 | ATP binding protein, putative [Ricinus c | 0.790 | 0.997 | 0.706 | 0.0 |
| >gi|225451199|ref|XP_002274195.1| PREDICTED: kinesin-like calmodulin-binding protein [Vitis vinifera] gi|298204930|emb|CBI34237.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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Score = 882 bits (2278), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 456/629 (72%), Positives = 513/629 (81%), Gaps = 3/629 (0%)
Query: 3 LDKGPEPLKS-SPMESTLESSDGLPPVPDLPDSPPLPLICTDVNVVPEQQKNELEQSIIN 61
L+ G E KS SP S +S +G P +L D P+P + TDV VVPEQ+K ELEQ+I
Sbjct: 14 LENGGESFKSTSPAGSYPDSLNGFPAGTELCDPVPVPALYTDVTVVPEQEKQELEQTIST 73
Query: 62 LEGEIVELRLKKRRLDEKRREALNKILDIKGCIRVFCRVRSFLVTGRRVIHEPVLTELEK 121
LEGEI LRL+ R LD RREALNKILDIKG IRVFCRVR L+T RR IH+P+ TELEK
Sbjct: 74 LEGEIAGLRLQHRSLDRTRREALNKILDIKGSIRVFCRVRPILLTDRRRIHQPISTELEK 133
Query: 122 VVVRSGGSKKEFGFDKVFNQAASQEDVFVEVEPILRSALDGHNVCVLAYGQTGTGKTFTM 181
+VVRSGGS+KEF FDKVF Q ASQEDVFVEVEPILRSALDGHNVC+LAYGQTGTGKTFTM
Sbjct: 134 IVVRSGGSRKEFSFDKVFPQEASQEDVFVEVEPILRSALDGHNVCILAYGQTGTGKTFTM 193
Query: 182 DGTSDQPGIVPRALEELFRQAALDNSSSVTFSMSMLEVYMGSVRDLLAPKPVFKAYEAAT 241
DGT+DQ GI PRAL +LF A+LD SSS TFSMSMLEVYMGS+RDLLAPK +AYE +
Sbjct: 194 DGTNDQLGIAPRALVQLFHNASLDKSSSYTFSMSMLEVYMGSLRDLLAPKSFSRAYETIS 253
Query: 242 RCNLNIQTDAKGTVEIEGLTEVQIPDFTKARWWYNKGRRVRSTSWTNVNEASSRSHCLMR 301
RCNLNIQTD KG VEIEGL+EV I DFTKA WWY KGRRVRSTSWTNVNEASSRSHCL R
Sbjct: 254 RCNLNIQTDPKGLVEIEGLSEVPISDFTKASWWYTKGRRVRSTSWTNVNEASSRSHCLTR 313
Query: 302 ITIFRHGDALEAKTEVSKLWMVDLGGSERVLKTGATGQTLDEGRAINLSLSALADVIAAL 361
ITIFR G A EAK EVSKLWMVDLGGSER+LKTGATGQTLDEGRAINLSLSAL DVIAAL
Sbjct: 314 ITIFRRGVASEAKAEVSKLWMVDLGGSERLLKTGATGQTLDEGRAINLSLSALGDVIAAL 373
Query: 362 RRKRGHVPYRNSKLTQILRDSLGDGSKVLMLVHASPCEEDVGETICSLSFAKRARGIESN 421
RRKRGHVPYRNSKLTQIL+DSLGDGSK+LMLVH SP EED+GET SLSFAKRAR +ES
Sbjct: 374 RRKRGHVPYRNSKLTQILKDSLGDGSKILMLVHVSPFEEDIGETTYSLSFAKRARAVEST 433
Query: 422 RELSEDLKKRREIRMAELEEDMREAEAECQNVRNQIKEVESLLSEKKKLFSAACQSLEDE 481
+EL EDLKK++E R+A+LEE+MREAE ECQ VRNQI++ E LL+E K+LFS+ Q EDE
Sbjct: 434 KELPEDLKKQKEKRIAKLEEEMREAEEECQKVRNQIQKAEFLLNENKRLFSSTYQPPEDE 493
Query: 482 EKSFVSPKENLKEAAETPKASKNVTKRSVSNSVPRFMTSTVASRQRKNAAEKEISIRARN 541
K+ SPK L + + + T+R SNS+PRFM STVASRQR AAEKEI RA +
Sbjct: 494 GKAPASPKGALVQVSRASLTFEKTTRRKFSNSMPRFMNSTVASRQRLGAAEKEIDSRANS 553
Query: 542 LITGSRSSAQFSCSQSLSFLDIRFKAMIRCSNKKPRYGETNTPVAESPKGNGGLYSKTTS 601
TG+RSS QFS SQSLS+ D+RFK+++R SNKK RYGETNTP ESPK + L SKTTS
Sbjct: 554 SRTGTRSSIQFSGSQSLSYSDLRFKSILR-SNKKSRYGETNTPAMESPKCS-DLDSKTTS 611
Query: 602 MPRNKVVTYSDPNLKVTLSRHRRRMSDFV 630
MPR+K+VT S+PNL+VTLSRHRRRMSDF+
Sbjct: 612 MPRSKIVTSSNPNLRVTLSRHRRRMSDFI 640
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224123306|ref|XP_002319046.1| predicted protein [Populus trichocarpa] gi|222857422|gb|EEE94969.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|13536981|dbj|BAB40709.1| BY-2 kinesin-like protein 5 [Nicotiana tabacum] | Back alignment and taxonomy information |
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| >gi|356533623|ref|XP_003535361.1| PREDICTED: kinesin-1-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|449435750|ref|XP_004135657.1| PREDICTED: kinesin-like protein KIFC3-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|449485800|ref|XP_004157277.1| PREDICTED: LOW QUALITY PROTEIN: kinesin-like protein KIFC3-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|356574910|ref|XP_003555586.1| PREDICTED: kinesin-1-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|297808815|ref|XP_002872291.1| hypothetical protein ARALYDRAFT_489620 [Arabidopsis lyrata subsp. lyrata] gi|297318128|gb|EFH48550.1| hypothetical protein ARALYDRAFT_489620 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
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| >gi|30690873|ref|NP_198147.2| kinesin motor protein-like protein [Arabidopsis thaliana] gi|18087642|gb|AAL58950.1|AF462865_1 AT5g27950/F15F15_20 [Arabidopsis thaliana] gi|27363228|gb|AAO11533.1| At5g27950/F15F15_20 [Arabidopsis thaliana] gi|110742322|dbj|BAE99085.1| hypothetical protein [Arabidopsis thaliana] gi|332006367|gb|AED93750.1| kinesin motor protein-like protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|255542412|ref|XP_002512269.1| ATP binding protein, putative [Ricinus communis] gi|223548230|gb|EEF49721.1| ATP binding protein, putative [Ricinus communis] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 630 | ||||||
| TAIR|locus:2143759 | 625 | AT5G27950 [Arabidopsis thalian | 0.931 | 0.939 | 0.586 | 1.1e-174 | |
| TAIR|locus:2193914 | 859 | AT1G55550 [Arabidopsis thalian | 0.688 | 0.505 | 0.428 | 9.3e-91 | |
| TAIR|locus:2136437 | 745 | ATK2 "kinesin 2" [Arabidopsis | 0.584 | 0.493 | 0.395 | 3.3e-63 | |
| TAIR|locus:2115713 | 790 | ATK5 "kinesin 5" [Arabidopsis | 0.530 | 0.422 | 0.426 | 1.3e-61 | |
| UNIPROTKB|B7Z484 | 848 | KIFC3 "cDNA FLJ56036, highly s | 0.519 | 0.385 | 0.428 | 4.3e-61 | |
| UNIPROTKB|F5H3M2 | 724 | KIFC3 "Kinesin-like protein KI | 0.519 | 0.451 | 0.428 | 4.3e-61 | |
| UNIPROTKB|F5H4I9 | 768 | KIFC3 "Kinesin-like protein KI | 0.519 | 0.425 | 0.428 | 4.3e-61 | |
| UNIPROTKB|Q9BVG8 | 833 | KIFC3 "Kinesin-like protein KI | 0.519 | 0.392 | 0.428 | 4.3e-61 | |
| UNIPROTKB|E1BFA7 | 833 | LOC539231 "Uncharacterized pro | 0.519 | 0.392 | 0.428 | 7.1e-61 | |
| UNIPROTKB|E2QS65 | 764 | KIFC3 "Uncharacterized protein | 0.519 | 0.428 | 0.431 | 7.1e-61 |
| TAIR|locus:2143759 AT5G27950 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 1697 (602.4 bits), Expect = 1.1e-174, P = 1.1e-174
Identities = 351/598 (58%), Positives = 426/598 (71%)
Query: 40 ICTDVNVVPEQQKNELEQSIINLEGEIVXXXXXXXXXXXXXXXALNKILDIKGCIRVFCR 99
+ TDVNVVPE + N+LE+SI NLE E+ LNKI+D KG IRVFCR
Sbjct: 26 VYTDVNVVPEHESNQLEKSISNLEEEVFELKLKLKSLDEKRKQVLNKIIDTKGSIRVFCR 85
Query: 100 VRSFLVTGRRVIHEPVLTELEKVVVRSGGSKKEFGFDKVFNQAASQEDVFVEVEPILRSA 159
VR FL+T RR I EPV + VV+RS GS KEF FDKVF+Q+A+QE+VF EV+PILRSA
Sbjct: 86 VRPFLLTERRPIREPVSFGPDNVVIRSAGSSKEFEFDKVFHQSATQEEVFGEVKPILRSA 145
Query: 160 LDGHNVCVLAYGQTGTGKTFTMDGTSDQPGIVPRALEELFRQAALDNSSSVTFSMSMLEV 219
LDGHNVCVLAYGQTGTGKTFTMDGTS+QPG+ PRA++ELF +A++D + SVTF MSMLE+
Sbjct: 146 LDGHNVCVLAYGQTGTGKTFTMDGTSEQPGLAPRAIKELFNEASMDQTHSVTFRMSMLEI 205
Query: 220 YMGSVRDLLAPKPVFKAYEAATRCNLNIQTDAKGTVEIEGLTEVQIPDFTKARWWYNKGR 279
YMG+++DLL+ + K+YEA+ +CNLNIQ D+KG+VEIEGLTEV++ DFTKARWWYNKGR
Sbjct: 206 YMGNLKDLLSARQSLKSYEASAKCNLNIQVDSKGSVEIEGLTEVEVMDFTKARWWYNKGR 265
Query: 280 RVRSTSWTNVNEASSRSHCLMRITIFRHGDALEAKTEVSKLWMVDLGGSERVLKTGATGQ 339
RVRSTSWTNVNE SSRSHCL RITIFR GDA+ +KTEVSKLWM+DLGGSER+LKTGA GQ
Sbjct: 266 RVRSTSWTNVNETSSRSHCLTRITIFRRGDAVGSKTEVSKLWMIDLGGSERLLKTGAIGQ 325
Query: 340 TLDEGRAINLSLSALADVIAALRRKRGHVPYRNSKLTQILRDSLGDGSKVLMLVHASPCE 399
T+DEGRAINLSLSAL DVIAALRRK+GHVPYRNSKLTQIL+DSLG SKVLMLVH SP +
Sbjct: 326 TMDEGRAINLSLSALGDVIAALRRKKGHVPYRNSKLTQILKDSLGTRSKVLMLVHISPRD 385
Query: 400 EDVGETICSLSFAKRARGIESNRELSEDLKKRREIXXXXXXXXXXXXXXXCQNVRNQIXX 459
EDVGETICSLSF KRAR +ESNR L+ +L+K RE C+ ++ ++
Sbjct: 386 EDVGETICSLSFTKRARAVESNRGLTAELQKLREKKISELEEEMEETQEGCKKIKARLQE 445
Query: 460 XXXXXXXXXXXXXAACQS-LEDEEKSFVSPKENLKEAAETPKASKNVTK-RSVSNSVPRF 517
LED EK +SP ++LK+ TP +S + K R S VPRF
Sbjct: 446 VECLVNEHKKLFWITNDKYLEDIEKKAISPLDHLKDTDATPISSDKLVKIRKSSGFVPRF 505
Query: 518 MTSTVASRQRKNAAEKEISIRARNLITGXXXXXXXXXXXXXXXXDIRFKAMIRCSNKKPR 577
MTSTVASRQR+ +EKEI+ +A+++ + D R KA++R S KP
Sbjct: 506 MTSTVASRQRQTMSEKEINAKAQSIRSVAKNLTQFSTSQSLSLSDSRSKALLRRSYTKPL 565
Query: 578 YGETN--TPVAESPKGN---GGLYSKT---TSMPRNKVVTYSDPNLKVTLSRHRRRMS 627
N TP E+PK + L K TS PR+K+VT SDPN++ L H+RRMS
Sbjct: 566 QAAANSGTP-PETPKRHIKDNSLQRKNMNDTSSPRSKMVTSSDPNVRAKLCHHKRRMS 622
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| TAIR|locus:2193914 AT1G55550 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2136437 ATK2 "kinesin 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2115713 ATK5 "kinesin 5" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| UNIPROTKB|B7Z484 KIFC3 "cDNA FLJ56036, highly similar to Homo sapiens kinesin family member C3 (KIFC3), mRNA" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F5H3M2 KIFC3 "Kinesin-like protein KIFC3" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F5H4I9 KIFC3 "Kinesin-like protein KIFC3" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q9BVG8 KIFC3 "Kinesin-like protein KIFC3" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
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| UNIPROTKB|E1BFA7 LOC539231 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
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| UNIPROTKB|E2QS65 KIFC3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | GSVIVG00031084001 | SubName- Full=Chromosome chr14 scaffold_54, whole genome shotgun sequence; (640 aa) | ||||||
(Vitis vinifera) | ||||||||
| Sorry, there are no predicted associations at the current settings. |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 630 | |||
| cd01366 | 329 | cd01366, KISc_C_terminal, Kinesin motor domain, KI | 1e-154 | |
| pfam00225 | 326 | pfam00225, Kinesin, Kinesin motor domain | 1e-122 | |
| smart00129 | 335 | smart00129, KISc, Kinesin motor, catalytic domain | 1e-110 | |
| cd00106 | 328 | cd00106, KISc, Kinesin motor domain | 1e-106 | |
| cd01369 | 325 | cd01369, KISc_KHC_KIF5, Kinesin motor domain, kine | 4e-85 | |
| cd01372 | 341 | cd01372, KISc_KIF4, Kinesin motor domain, KIF4-lik | 9e-80 | |
| cd01371 | 333 | cd01371, KISc_KIF3, Kinesin motor domain, kinesins | 2e-74 | |
| cd01370 | 338 | cd01370, KISc_KIP3_like, Kinesin motor domain, KIP | 9e-74 | |
| cd01365 | 356 | cd01365, KISc_KIF1A_KIF1B, Kinesin motor domain, K | 7e-73 | |
| cd01375 | 334 | cd01375, KISc_KIF9_like, Kinesin motor domain, KIF | 1e-70 | |
| cd01367 | 322 | cd01367, KISc_KIF2_like, Kinesin motor domain, KIF | 6e-66 | |
| cd01374 | 321 | cd01374, KISc_CENP_E, Kinesin motor domain, CENP-E | 8e-66 | |
| cd01364 | 352 | cd01364, KISc_BimC_Eg5, Kinesin motor domain, BimC | 7e-65 | |
| cd01376 | 319 | cd01376, KISc_KID_like, Kinesin motor domain, KIF2 | 3e-63 | |
| COG5059 | 568 | COG5059, KIP1, Kinesin-like protein [Cytoskeleton] | 6e-60 | |
| cd01368 | 345 | cd01368, KISc_KIF23_like, Kinesin motor domain, KI | 1e-55 | |
| cd01373 | 337 | cd01373, KISc_KLP2_like, Kinesin motor domain, KLP | 3e-55 | |
| PLN03188 | 1320 | PLN03188, PLN03188, kinesin-12 family protein; Pro | 2e-41 | |
| cd01363 | 186 | cd01363, Motor_domain, Myosin and Kinesin motor do | 1e-28 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 0.003 |
| >gnl|CDD|238662 cd01366, KISc_C_terminal, Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins | Back alignment and domain information |
|---|
Score = 445 bits (1147), Expect = e-154
Identities = 164/335 (48%), Positives = 212/335 (63%), Gaps = 14/335 (4%)
Query: 91 KGCIRVFCRVRSFLVTGRR----VIHEPVLTELEKVVVRSGGSKKEFGFDKVFNQAASQE 146
KG IRVFCRVR L + VI P + + G KK F FD+VF+ ASQE
Sbjct: 1 KGNIRVFCRVRPLLPSESTEYSSVISFPDEDGGTIELSKGTGKKKSFSFDRVFDPDASQE 60
Query: 147 DVFVEVEPILRSALDGHNVCVLAYGQTGTGKTFTMDGTSDQPGIVPRALEELFRQAALDN 206
DVF EV P+++SALDG+NVC+ AYGQTG+GKT+TM+G + PGI+PRALE+LF A
Sbjct: 61 DVFEEVSPLVQSALDGYNVCIFAYGQTGSGKTYTMEGPPENPGIIPRALEQLFNTAEELK 120
Query: 207 SSSVTFSM--SMLEVYMGSVRDLLAPKPVFKAYEAATRCNLNIQTDAKGTVEIEGLTEVQ 264
++++ SMLE+Y ++RDLLA KP A + L I+ D+KG + LTEV
Sbjct: 121 EKGWSYTITASMLEIYNETIRDLLATKP-------APKKKLEIKHDSKGETYVTNLTEVP 173
Query: 265 IPDFTKARWWYNKGRRVRSTSWTNVNEASSRSHCLMRITIFRHGDALEAKTEVSKLWMVD 324
+ + N G + RS + TN+NE SSRSH + ++ I +T KL +VD
Sbjct: 174 VSSPEEVTRLLNLGSKNRSVASTNMNEHSSRSHAVFQLKIRGTNLQTGEQT-RGKLNLVD 232
Query: 325 LGGSERVLKTGATGQTLDEGRAINLSLSALADVIAALRRKRGHVPYRNSKLTQILRDSLG 384
L GSER+ K+GATG L E +AIN SLSAL DVI+ALR K HVPYRNSKLT +L+DSLG
Sbjct: 233 LAGSERLKKSGATGDRLKEAQAINKSLSALGDVISALRSKDSHVPYRNSKLTYLLQDSLG 292
Query: 385 DGSKVLMLVHASPCEEDVGETICSLSFAKRARGIE 419
SK LM V+ SP E ++ ET+CSL FA R R +E
Sbjct: 293 GNSKTLMFVNISPLESNLSETLCSLRFASRVRSVE 327
|
Ncd is a spindle motor protein necessary for chromosome segregation in meiosis. KIFC2/KIFC3-like kinesins have been implicated in motility of the Golgi apparatus as well as dentritic and axonal transport in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found at the C-terminus (C-type). C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward. Length = 329 |
| >gnl|CDD|215803 pfam00225, Kinesin, Kinesin motor domain | Back alignment and domain information |
|---|
| >gnl|CDD|214526 smart00129, KISc, Kinesin motor, catalytic domain | Back alignment and domain information |
|---|
| >gnl|CDD|238054 cd00106, KISc, Kinesin motor domain | Back alignment and domain information |
|---|
| >gnl|CDD|238665 cd01369, KISc_KHC_KIF5, Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup | Back alignment and domain information |
|---|
| >gnl|CDD|238668 cd01372, KISc_KIF4, Kinesin motor domain, KIF4-like subfamily | Back alignment and domain information |
|---|
| >gnl|CDD|238667 cd01371, KISc_KIF3, Kinesin motor domain, kinesins II or KIF3_like proteins | Back alignment and domain information |
|---|
| >gnl|CDD|238666 cd01370, KISc_KIP3_like, Kinesin motor domain, KIP3-like subgroup | Back alignment and domain information |
|---|
| >gnl|CDD|238661 cd01365, KISc_KIF1A_KIF1B, Kinesin motor domain, KIF1_like proteins | Back alignment and domain information |
|---|
| >gnl|CDD|238671 cd01375, KISc_KIF9_like, Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling | Back alignment and domain information |
|---|
| >gnl|CDD|238663 cd01367, KISc_KIF2_like, Kinesin motor domain, KIF2-like group | Back alignment and domain information |
|---|
| >gnl|CDD|238670 cd01374, KISc_CENP_E, Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis | Back alignment and domain information |
|---|
| >gnl|CDD|238660 cd01364, KISc_BimC_Eg5, Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division | Back alignment and domain information |
|---|
| >gnl|CDD|238672 cd01376, KISc_KID_like, Kinesin motor domain, KIF22/Kid-like subgroup | Back alignment and domain information |
|---|
| >gnl|CDD|227392 COG5059, KIP1, Kinesin-like protein [Cytoskeleton] | Back alignment and domain information |
|---|
| >gnl|CDD|238664 cd01368, KISc_KIF23_like, Kinesin motor domain, KIF23-like subgroup | Back alignment and domain information |
|---|
| >gnl|CDD|238669 cd01373, KISc_KLP2_like, Kinesin motor domain, KLP2-like subgroup | Back alignment and domain information |
|---|
| >gnl|CDD|215621 PLN03188, PLN03188, kinesin-12 family protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|238659 cd01363, Motor_domain, Myosin and Kinesin motor domain | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 630 | |||
| KOG0245 | 1221 | consensus Kinesin-like protein [Cytoskeleton] | 100.0 | |
| KOG4280 | 574 | consensus Kinesin-like protein [Cytoskeleton] | 100.0 | |
| KOG0239 | 670 | consensus Kinesin (KAR3 subfamily) [Cytoskeleton] | 100.0 | |
| KOG0243 | 1041 | consensus Kinesin-like protein [Cytoskeleton] | 100.0 | |
| PLN03188 | 1320 | kinesin-12 family protein; Provisional | 100.0 | |
| KOG0240 | 607 | consensus Kinesin (SMY1 subfamily) [Cytoskeleton] | 100.0 | |
| cd01370 | 338 | KISc_KIP3_like Kinesin motor domain, KIP3-like sub | 100.0 | |
| cd01373 | 337 | KISc_KLP2_like Kinesin motor domain, KLP2-like sub | 100.0 | |
| KOG0242 | 675 | consensus Kinesin-like protein [Cytoskeleton] | 100.0 | |
| cd01368 | 345 | KISc_KIF23_like Kinesin motor domain, KIF23-like s | 100.0 | |
| KOG0241 | 1714 | consensus Kinesin-like protein [Cytoskeleton] | 100.0 | |
| cd01365 | 356 | KISc_KIF1A_KIF1B Kinesin motor domain, KIF1_like p | 100.0 | |
| cd01367 | 322 | KISc_KIF2_like Kinesin motor domain, KIF2-like gro | 100.0 | |
| cd01376 | 319 | KISc_KID_like Kinesin motor domain, KIF22/Kid-like | 100.0 | |
| cd01374 | 321 | KISc_CENP_E Kinesin motor domain, CENP-E/KIP2-like | 100.0 | |
| cd01364 | 352 | KISc_BimC_Eg5 Kinesin motor domain, BimC/Eg5 spind | 100.0 | |
| cd01369 | 325 | KISc_KHC_KIF5 Kinesin motor domain, kinesin heavy | 100.0 | |
| cd01366 | 329 | KISc_C_terminal Kinesin motor domain, KIFC2/KIFC3/ | 100.0 | |
| cd01371 | 333 | KISc_KIF3 Kinesin motor domain, kinesins II or KIF | 100.0 | |
| cd01372 | 341 | KISc_KIF4 Kinesin motor domain, KIF4-like subfamil | 100.0 | |
| cd01375 | 334 | KISc_KIF9_like Kinesin motor domain, KIF9-like sub | 100.0 | |
| smart00129 | 335 | KISc Kinesin motor, catalytic domain. ATPase. Micr | 100.0 | |
| cd00106 | 328 | KISc Kinesin motor domain. This catalytic (head) d | 100.0 | |
| PF00225 | 335 | Kinesin: Kinesin motor domain; InterPro: IPR001752 | 100.0 | |
| KOG0247 | 809 | consensus Kinesin-like protein [Cytoskeleton] | 100.0 | |
| KOG0246 | 676 | consensus Kinesin-like protein [Cytoskeleton] | 100.0 | |
| KOG0244 | 913 | consensus Kinesin-like protein [Cytoskeleton] | 100.0 | |
| COG5059 | 568 | KIP1 Kinesin-like protein [Cytoskeleton] | 100.0 | |
| cd01363 | 186 | Motor_domain Myosin and Kinesin motor domain. Thes | 100.0 | |
| COG5059 | 568 | KIP1 Kinesin-like protein [Cytoskeleton] | 99.07 | |
| KOG0239 | 670 | consensus Kinesin (KAR3 subfamily) [Cytoskeleton] | 95.69 | |
| TIGR01242 | 364 | 26Sp45 26S proteasome subunit P45 family. Many pro | 94.71 | |
| COG0556 | 663 | UvrB Helicase subunit of the DNA excision repair c | 94.15 | |
| PF00308 | 219 | Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013 | 93.85 | |
| PTZ00454 | 398 | 26S protease regulatory subunit 6B-like protein; P | 92.45 | |
| COG2805 | 353 | PilT Tfp pilus assembly protein, pilus retraction | 92.4 | |
| PRK06893 | 229 | DNA replication initiation factor; Validated | 91.64 | |
| PRK06620 | 214 | hypothetical protein; Validated | 91.55 | |
| PRK12377 | 248 | putative replication protein; Provisional | 91.12 | |
| COG2804 | 500 | PulE Type II secretory pathway, ATPase PulE/Tfp pi | 91.02 | |
| PRK08084 | 235 | DNA replication initiation factor; Provisional | 90.99 | |
| PRK03992 | 389 | proteasome-activating nucleotidase; Provisional | 90.75 | |
| PRK14086 | 617 | dnaA chromosomal replication initiation protein; P | 90.46 | |
| PRK08116 | 268 | hypothetical protein; Validated | 90.35 | |
| PRK07952 | 244 | DNA replication protein DnaC; Validated | 89.97 | |
| PRK14088 | 440 | dnaA chromosomal replication initiation protein; P | 89.78 | |
| PRK05642 | 234 | DNA replication initiation factor; Validated | 89.73 | |
| PRK14087 | 450 | dnaA chromosomal replication initiation protein; P | 88.97 | |
| TIGR00362 | 405 | DnaA chromosomal replication initiator protein Dna | 88.95 | |
| COG1474 | 366 | CDC6 Cdc6-related protein, AAA superfamily ATPase | 88.85 | |
| TIGR03420 | 226 | DnaA_homol_Hda DnaA regulatory inactivator Hda. Me | 88.4 | |
| PRK08903 | 227 | DnaA regulatory inactivator Hda; Validated | 88.37 | |
| PRK06835 | 329 | DNA replication protein DnaC; Validated | 88.21 | |
| TIGR02928 | 365 | orc1/cdc6 family replication initiation protein. M | 88.18 | |
| PRK00149 | 450 | dnaA chromosomal replication initiation protein; R | 88.12 | |
| PRK09087 | 226 | hypothetical protein; Validated | 87.41 | |
| PF04851 | 184 | ResIII: Type III restriction enzyme, res subunit; | 87.31 | |
| PTZ00361 | 438 | 26 proteosome regulatory subunit 4-like protein; P | 87.08 | |
| PRK00411 | 394 | cdc6 cell division control protein 6; Reviewed | 87.02 | |
| COG0593 | 408 | DnaA ATPase involved in DNA replication initiation | 86.64 | |
| COG1484 | 254 | DnaC DNA replication protein [DNA replication, rec | 85.17 | |
| PRK06526 | 254 | transposase; Provisional | 85.03 | |
| PRK08939 | 306 | primosomal protein DnaI; Reviewed | 84.92 | |
| PRK08727 | 233 | hypothetical protein; Validated | 83.9 | |
| cd00009 | 151 | AAA The AAA+ (ATPases Associated with a wide varie | 83.62 | |
| PRK08181 | 269 | transposase; Validated | 83.19 | |
| TIGR03689 | 512 | pup_AAA proteasome ATPase. In the Actinobacteria, | 83.12 | |
| cd00046 | 144 | DEXDc DEAD-like helicases superfamily. A diverse f | 82.53 | |
| PF00437 | 270 | T2SE: Type II/IV secretion system protein; InterPr | 81.88 | |
| PF13245 | 76 | AAA_19: Part of AAA domain | 81.81 | |
| PF00270 | 169 | DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 | 81.73 | |
| COG5008 | 375 | PilU Tfp pilus assembly protein, ATPase PilU [Cell | 81.13 | |
| PRK10436 | 462 | hypothetical protein; Provisional | 81.0 | |
| PTZ00112 | 1164 | origin recognition complex 1 protein; Provisional | 80.78 | |
| COG1201 | 814 | Lhr Lhr-like helicases [General function predictio | 80.59 | |
| TIGR02538 | 564 | type_IV_pilB type IV-A pilus assembly ATPase PilB. | 80.43 | |
| PRK12402 | 337 | replication factor C small subunit 2; Reviewed | 80.36 | |
| PF13191 | 185 | AAA_16: AAA ATPase domain; PDB: 2V1U_A. | 80.11 | |
| TIGR02533 | 486 | type_II_gspE general secretory pathway protein E. | 80.08 |
| >KOG0245 consensus Kinesin-like protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-91 Score=780.71 Aligned_cols=404 Identities=32% Similarity=0.513 Sum_probs=349.6
Q ss_pred CCEEEEEEeCCCCcccCC-CccccEEecCCEEEEEeCC-c--eEEEEeceeeCC-------CCChhhHHHhh-HHHHHHh
Q 006826 92 GCIRVFCRVRSFLVTGRR-VIHEPVLTELEKVVVRSGG-S--KKEFGFDKVFNQ-------AASQEDVFVEV-EPILRSA 159 (630)
Q Consensus 92 G~IrV~~RvRP~~~~e~~-~~~~~v~~~~~~v~v~~~~-~--~~~F~FD~VF~~-------~atQ~eVf~~v-~plV~sv 159 (630)
.+|.|.|||||++..|.. ...+++.+.+++.++.... . ...|+||++||. .++|..||+++ .++|+.+
T Consensus 4 ssv~VAVRVRPfn~rE~s~~~k~Vvqm~gn~ttii~~~~~k~~~~FtfD~SYWS~d~edPhfAsQ~qVYedlg~~mL~~A 83 (1221)
T KOG0245|consen 4 SSVKVAVRVRPFNAREKSRDAKCVVQMQGNTTTIINPKGSKDAPKFTFDYSYWSHDSEDPHFASQKQVYEDLGREMLDHA 83 (1221)
T ss_pred CceEEEEEeccchhhhhhcccceEEEecCCceeeecCCCcccCCceecceeeecCCCCCCchhhHHHHHHHHhHHHHHHH
Confidence 479999999999986643 4566677777777766433 2 266999999985 47899999999 9999999
Q ss_pred hcCcceeEEecccCCCCcceeecCCC--CCCCchhHHHHHHHHHHhcC--CCceEEEEEeEEEEecceeeecCC-CCCcc
Q 006826 160 LDGHNVCVLAYGQTGTGKTFTMDGTS--DQPGIVPRALEELFRQAALD--NSSSVTFSMSMLEVYMGSVRDLLA-PKPVF 234 (630)
Q Consensus 160 l~GyN~~IfaYGqTGSGKTyTM~G~~--~~~GIIpRal~~LF~~~~~~--~~~~~~v~vS~lEIYnE~I~DLL~-~~~~~ 234 (630)
|+|||+||||||||||||||||+|.. +++|||||+|++||.++... .+..|.|.|||+|||||+|+|||+ |.+
T Consensus 84 fEGYN~ClFAYGQTGSGKSYTMMG~~~~~e~GIIPrlCEeLF~ri~~nq~~~~sy~VevSymEIYcErVrDLL~~p~~-- 161 (1221)
T KOG0245|consen 84 FEGYNVCLFAYGQTGSGKSYTMMGFQEPDEPGIIPRLCEELFSRIADNQSQQMSYSVEVSYMEIYCERVRDLLNAPKS-- 161 (1221)
T ss_pred hcccceEEEEeccCCCCcceeeeccCCCCCCCchhHHHHHHHHHHhhcccccceEEEEEeehhHHHHHHHHHhhCCCC--
Confidence 99999999999999999999999987 99999999999999987644 378999999999999999999998 433
Q ss_pred chhhhhcccCeeEEeCCCCCEEEcCcEEEEcCChHHHHHHHHhhhhcccccccCCCCCCCCcEEEEEEEEEEecCCCC--
Q 006826 235 KAYEAATRCNLNIQTDAKGTVEIEGLTEVQIPDFTKARWWYNKGRRVRSTSWTNVNEASSRSHCLMRITIFRHGDALE-- 312 (630)
Q Consensus 235 ~~~~~~~~~~L~i~ed~~g~v~v~glt~v~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~I~v~~~~~~~~-- 312 (630)
+.+|++++++.-|+||++|+.+.|+|+.|+..|++.|++.|++|+|+||+.|||||+||+|.+.+......
T Consensus 162 -------kg~LRVREHP~lGPYVedLS~~aV~Sy~dI~~~md~GNkqRTtAATnMNdtSSRSHaVFtIvftQk~~~~~~~ 234 (1221)
T KOG0245|consen 162 -------KGGLRVREHPILGPYVEDLSKLAVTSYADIQDLMDEGNKQRTTAATNMNDTSSRSHAVFTIVFTQKKHDQDTG 234 (1221)
T ss_pred -------CCCceeeccCccChhHhHhhhcccccHHHHHHHHHhcchhhhhhhhccccccccceeEEEEEEEeeeccccCC
Confidence 45899999999999999999999999999999999999999999999999999999999999988643332
Q ss_pred -CceEEeEeEEEecCCCccccccCCCcchhhhhhhhhHhHHHHHHHHHHHHhCC-------CCccCCCCchhhhhhcccC
Q 006826 313 -AKTEVSKLWMVDLGGSERVLKTGATGQTLDEGRAINLSLSALADVIAALRRKR-------GHVPYRNSKLTQILRDSLG 384 (630)
Q Consensus 313 -~~~~~skL~lVDLAGSEr~~kt~a~g~rl~E~~~INkSLsaLg~VI~aL~~~~-------~hiPYRdSKLT~LLqdsLg 384 (630)
....+|+|+|||||||||+..+|+.|+||+||.+|||||.+||.||+||++.+ .+||||||.|||||+++||
T Consensus 235 l~sek~SKIsLVDLAGSERasstGa~G~RLKEGa~INKSLtTLGkVISALAe~~~~k~~ks~fIPYRDSVLTWLLkEnLG 314 (1221)
T KOG0245|consen 235 LDSEKVSKISLVDLAGSERASSTGANGDRLKEGANINKSLTTLGKVISALAESQKGKKKKSDFIPYRDSVLTWLLKENLG 314 (1221)
T ss_pred CcceeeeeeeEEeccCcccccccCCCccchhcccccchHHHHHHHHHHHHHHHhccCCCCCccccchHHHHHHHHHHhcC
Confidence 36788999999999999999999999999999999999999999999997533 4899999999999999999
Q ss_pred CCceeeeEEecCCCCCcHHHhHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHHHHHHHH----------------
Q 006826 385 DGSKVLMLVHASPCEEDVGETICSLSFAKRARGIESNRELSEDLKKRREIRMAELEEDMREAEA---------------- 448 (630)
Q Consensus 385 GnskT~mI~~VSP~~~~~~ETlsTLrFA~rar~I~~~~~~~~~~~~~~~~~i~~L~~el~~l~~---------------- 448 (630)
|||||+||+++||++.||+|||+|||||.|||+|++++.+|+|+.. +.|.+|.+|+..|+.
T Consensus 315 GNSKTaMIAAlSPAdiNyeETLSTLRYAdRAK~Iv~~avVNEdpna---KLIRELreEv~rLksll~~~~~~~~~~~~~p 391 (1221)
T KOG0245|consen 315 GNSKTAMIAALSPADINYEETLSTLRYADRAKQIVNNAVVNEDPNA---KLIRELREEVARLKSLLRAQGLGDIAVEGSP 391 (1221)
T ss_pred CcchhhhhhccChhhcChHHHHHHHHHhhHhhhhhccceeCCCccH---HHHHHHHHHHHHHHHHHhccccccccccCCc
Confidence 9999999999999999999999999999999999999999999876 357778777776654
Q ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhh-----------hcc--C--CchhhHHHhhcCcccccccc
Q 006826 449 -------ECQNVRNQIKEVESLLSEKKKLFSAACQSLEDEE-----------KSF--V--SPKENLKEAAETPKASKNVT 506 (630)
Q Consensus 449 -------e~~~l~~qi~~~e~~l~e~~~~~~~~~~~l~~e~-----------~~~--~--~~~~~l~~~~~~~~~~~~~~ 506 (630)
++..+++++++-|..+.|..+.|+++....++.. .++ + +...+|.++++||..++...
T Consensus 392 ~~~~~~~~~e~~~~~L~E~Ek~mael~etW~EKl~~aEair~e~~~~L~emGva~~~D~~kk~phLVNLneDPllSe~Ll 471 (1221)
T KOG0245|consen 392 SALLSQPEIEELRERLQETEKIMAELNETWEEKLREAEAIRMEREALLAEMGVAVREDGGKKTPHLVNLNEDPLLSECLL 471 (1221)
T ss_pred ccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcCceeeecCCccCcceeccCCCchhhccEE
Confidence 3667788888888888887777766554432211 111 1 25578999999999988766
Q ss_pred c
Q 006826 507 K 507 (630)
Q Consensus 507 ~ 507 (630)
+
T Consensus 472 Y 472 (1221)
T KOG0245|consen 472 Y 472 (1221)
T ss_pred E
Confidence 5
|
|
| >KOG4280 consensus Kinesin-like protein [Cytoskeleton] | Back alignment and domain information |
|---|
| >KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton] | Back alignment and domain information |
|---|
| >KOG0243 consensus Kinesin-like protein [Cytoskeleton] | Back alignment and domain information |
|---|
| >PLN03188 kinesin-12 family protein; Provisional | Back alignment and domain information |
|---|
| >KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton] | Back alignment and domain information |
|---|
| >cd01370 KISc_KIP3_like Kinesin motor domain, KIP3-like subgroup | Back alignment and domain information |
|---|
| >cd01373 KISc_KLP2_like Kinesin motor domain, KLP2-like subgroup | Back alignment and domain information |
|---|
| >KOG0242 consensus Kinesin-like protein [Cytoskeleton] | Back alignment and domain information |
|---|
| >cd01368 KISc_KIF23_like Kinesin motor domain, KIF23-like subgroup | Back alignment and domain information |
|---|
| >KOG0241 consensus Kinesin-like protein [Cytoskeleton] | Back alignment and domain information |
|---|
| >cd01365 KISc_KIF1A_KIF1B Kinesin motor domain, KIF1_like proteins | Back alignment and domain information |
|---|
| >cd01367 KISc_KIF2_like Kinesin motor domain, KIF2-like group | Back alignment and domain information |
|---|
| >cd01376 KISc_KID_like Kinesin motor domain, KIF22/Kid-like subgroup | Back alignment and domain information |
|---|
| >cd01374 KISc_CENP_E Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis | Back alignment and domain information |
|---|
| >cd01364 KISc_BimC_Eg5 Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division | Back alignment and domain information |
|---|
| >cd01369 KISc_KHC_KIF5 Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup | Back alignment and domain information |
|---|
| >cd01366 KISc_C_terminal Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins | Back alignment and domain information |
|---|
| >cd01371 KISc_KIF3 Kinesin motor domain, kinesins II or KIF3_like proteins | Back alignment and domain information |
|---|
| >cd01372 KISc_KIF4 Kinesin motor domain, KIF4-like subfamily | Back alignment and domain information |
|---|
| >cd01375 KISc_KIF9_like Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling | Back alignment and domain information |
|---|
| >smart00129 KISc Kinesin motor, catalytic domain | Back alignment and domain information |
|---|
| >cd00106 KISc Kinesin motor domain | Back alignment and domain information |
|---|
| >PF00225 Kinesin: Kinesin motor domain; InterPro: IPR001752 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport | Back alignment and domain information |
|---|
| >KOG0247 consensus Kinesin-like protein [Cytoskeleton] | Back alignment and domain information |
|---|
| >KOG0246 consensus Kinesin-like protein [Cytoskeleton] | Back alignment and domain information |
|---|
| >KOG0244 consensus Kinesin-like protein [Cytoskeleton] | Back alignment and domain information |
|---|
| >COG5059 KIP1 Kinesin-like protein [Cytoskeleton] | Back alignment and domain information |
|---|
| >cd01363 Motor_domain Myosin and Kinesin motor domain | Back alignment and domain information |
|---|
| >COG5059 KIP1 Kinesin-like protein [Cytoskeleton] | Back alignment and domain information |
|---|
| >KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton] | Back alignment and domain information |
|---|
| >TIGR01242 26Sp45 26S proteasome subunit P45 family | Back alignment and domain information |
|---|
| >COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication | Back alignment and domain information |
|---|
| >PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional | Back alignment and domain information |
|---|
| >COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
| >PRK06893 DNA replication initiation factor; Validated | Back alignment and domain information |
|---|
| >PRK06620 hypothetical protein; Validated | Back alignment and domain information |
|---|
| >PRK12377 putative replication protein; Provisional | Back alignment and domain information |
|---|
| >COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
| >PRK08084 DNA replication initiation factor; Provisional | Back alignment and domain information |
|---|
| >PRK03992 proteasome-activating nucleotidase; Provisional | Back alignment and domain information |
|---|
| >PRK14086 dnaA chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
| >PRK08116 hypothetical protein; Validated | Back alignment and domain information |
|---|
| >PRK07952 DNA replication protein DnaC; Validated | Back alignment and domain information |
|---|
| >PRK14088 dnaA chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
| >PRK05642 DNA replication initiation factor; Validated | Back alignment and domain information |
|---|
| >PRK14087 dnaA chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
| >TIGR00362 DnaA chromosomal replication initiator protein DnaA | Back alignment and domain information |
|---|
| >COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda | Back alignment and domain information |
|---|
| >PRK08903 DnaA regulatory inactivator Hda; Validated | Back alignment and domain information |
|---|
| >PRK06835 DNA replication protein DnaC; Validated | Back alignment and domain information |
|---|
| >TIGR02928 orc1/cdc6 family replication initiation protein | Back alignment and domain information |
|---|
| >PRK00149 dnaA chromosomal replication initiation protein; Reviewed | Back alignment and domain information |
|---|
| >PRK09087 hypothetical protein; Validated | Back alignment and domain information |
|---|
| >PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3 | Back alignment and domain information |
|---|
| >PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional | Back alignment and domain information |
|---|
| >PRK00411 cdc6 cell division control protein 6; Reviewed | Back alignment and domain information |
|---|
| >COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >PRK06526 transposase; Provisional | Back alignment and domain information |
|---|
| >PRK08939 primosomal protein DnaI; Reviewed | Back alignment and domain information |
|---|
| >PRK08727 hypothetical protein; Validated | Back alignment and domain information |
|---|
| >cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold | Back alignment and domain information |
|---|
| >PRK08181 transposase; Validated | Back alignment and domain information |
|---|
| >TIGR03689 pup_AAA proteasome ATPase | Back alignment and domain information |
|---|
| >cd00046 DEXDc DEAD-like helicases superfamily | Back alignment and domain information |
|---|
| >PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ] | Back alignment and domain information |
|---|
| >PF13245 AAA_19: Part of AAA domain | Back alignment and domain information |
|---|
| >PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases | Back alignment and domain information |
|---|
| >COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
| >PRK10436 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >PTZ00112 origin recognition complex 1 protein; Provisional | Back alignment and domain information |
|---|
| >COG1201 Lhr Lhr-like helicases [General function prediction only] | Back alignment and domain information |
|---|
| >TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB | Back alignment and domain information |
|---|
| >PRK12402 replication factor C small subunit 2; Reviewed | Back alignment and domain information |
|---|
| >PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A | Back alignment and domain information |
|---|
| >TIGR02533 type_II_gspE general secretory pathway protein E | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 630 | ||||
| 3h4s_A | 386 | Structure Of The Complex Of A Mitotic Kinesin With | 1e-67 | ||
| 1sdm_A | 369 | Crystal Structure Of Kinesin-Like Calmodulin Bindin | 1e-65 | ||
| 2h58_A | 330 | Crystal Structure Of The Kifc3 Motor Domain In Comp | 4e-65 | ||
| 1goj_A | 355 | Structure Of A Fast Kinesin: Implications For Atpas | 4e-54 | ||
| 2ncd_A | 420 | Ncd (Non-Claret Disjunctional) Dimer From D. Melano | 1e-52 | ||
| 1cz7_A | 406 | The Crystal Structure Of A Minus-End Directed Micro | 2e-52 | ||
| 3gbj_A | 354 | Crystal Structure Of The Motor Domain Of Kinesin Ki | 4e-52 | ||
| 3l1c_A | 383 | Kinesin-14 Protein Ncd, T436s Mutant Length = 383 | 9e-52 | ||
| 1n6m_A | 409 | Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRY | 1e-51 | ||
| 3u06_A | 412 | Crystal Structure Of The Kinesin-14 Ncdg347d Length | 1e-51 | ||
| 4a14_A | 344 | Human Kif7, A Kinesin Involved In Hedgehog Signalli | 1e-49 | ||
| 2vvg_A | 350 | Crystal Structure Of The G.Intestinalis Kinesin 2 G | 3e-49 | ||
| 1bg2_A | 325 | Human Ubiquitous Kinesin Motor Domain Length = 325 | 3e-49 | ||
| 1mkj_A | 349 | Human Kinesin Motor Domain With Docked Neck Linker | 4e-49 | ||
| 3b6u_A | 372 | Crystal Structure Of The Motor Domain Of Human Kine | 7e-49 | ||
| 4atx_C | 340 | Rigor Kinesin Motor Domain With An Ordered Neck-Lin | 1e-48 | ||
| 4h1g_A | 715 | Structure Of Candida Albicans Kar3 Motor Domain Fus | 2e-48 | ||
| 2xt3_A | 344 | Human Kif7, A Kinesin Involved In Hedgehog Signalli | 7e-48 | ||
| 4aqv_C | 373 | Model Of Human Kinesin-5 Motor Domain (3hqd) And Ma | 1e-47 | ||
| 2y5w_A | 365 | Crystal Structure Of Drosophila Melanogaster Kinesi | 2e-47 | ||
| 3b6v_A | 395 | Crystal Structure Of The Motor Domain Of Human Kine | 9e-47 | ||
| 3hqd_A | 369 | Human Kinesin Eg5 Motor Domain In Complex With Ampp | 1e-46 | ||
| 4a28_A | 368 | Eg5-2 Length = 368 | 3e-46 | ||
| 1q0b_A | 367 | Crystal Structure Of The Motor Protein Ksp In Compl | 3e-46 | ||
| 4ap0_A | 370 | The Mitotic Kinesin Eg5 In Complex With Mg-Adp And | 3e-46 | ||
| 1ii6_A | 368 | Crystal Structure Of The Mitotic Kinesin Eg5 In Com | 3e-46 | ||
| 1x88_A | 359 | Human Eg5 Motor Domain Bound To Mg-Adp And Monastro | 5e-46 | ||
| 4a1z_A | 368 | Eg5-1 Length = 368 | 5e-46 | ||
| 3bfn_A | 388 | Crystal Structure Of The Motor Domain Of Human Kine | 1e-45 | ||
| 3zcw_A | 348 | Eg5 - New Allosteric Binding Site Length = 348 | 1e-45 | ||
| 2rep_A | 376 | Crystal Structure Of The Motor Domain Of Human Kine | 3e-45 | ||
| 3lre_A | 355 | Crystal Structure Analysis Of Human Kinesin-8 Motor | 8e-45 | ||
| 1i5s_A | 367 | Crystal Structure Of The Kif1a Motor Domain Complex | 9e-44 | ||
| 1i6i_A | 366 | Crystal Structure Of The Kif1a Motor Domain Complex | 9e-44 | ||
| 2owm_A | 443 | Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3 | 1e-43 | ||
| 4gkr_A | 371 | Structure Of The C-Terminal Motor Domain Of Kar3 Fr | 1e-43 | ||
| 1ia0_K | 394 | Kif1a Head-Microtubule Complex Structure In Atp-For | 2e-43 | ||
| 1vfv_A | 366 | Crystal Structure Of The Kif1a Motor Domain Complex | 2e-43 | ||
| 3t0q_A | 349 | Motor Domain Structure Of The Kar3-Like Kinesin Fro | 3e-43 | ||
| 2wbe_C | 373 | Kinesin-5-Tubulin Complex With Amppnp Length = 373 | 1e-42 | ||
| 1f9t_A | 358 | Crystal Structures Of Kinesin Mutants Reveal A Sign | 1e-42 | ||
| 1t5c_A | 349 | Crystal Structure Of The Motor Domain Of Human Kine | 9e-42 | ||
| 4etp_A | 403 | C-Terminal Motor And Motor Homology Domain Of Kar3v | 1e-41 | ||
| 3kar_A | 346 | The Motor Domain Of Kinesin-Like Protein Kar3, A Sa | 1e-41 | ||
| 1f9w_A | 347 | Crystal Structures Of Mutants Reveal A Signalling P | 4e-41 | ||
| 1f9v_A | 347 | Crystal Structures Of Mutants Reveal A Signalling P | 5e-41 | ||
| 1f9u_A | 347 | Crystal Structures Of Mutants Reveal A Signalling P | 5e-41 | ||
| 3nwn_A | 359 | Crystal Structure Of The Human Kif9 Motor Domain In | 7e-39 | ||
| 3pxn_A | 344 | Crystal Structure Of The Drosophila Kinesin Family | 9e-32 | ||
| 3dc4_A | 344 | Crystal Structure Of The Drosophila Kinesin Family | 9e-32 | ||
| 1v8j_A | 410 | The Crystal Structure Of The Minimal Functional Dom | 2e-31 | ||
| 3edl_D | 331 | Kinesin13-Microtubule Ring Complex Length = 331 | 5e-31 | ||
| 2gry_A | 420 | Crystal Structure Of The Human Kif2 Motor Domain In | 3e-30 | ||
| 2heh_A | 387 | Crystal Structure Of The Kif2c Motor Domain (Casp T | 8e-30 | ||
| 1ry6_A | 360 | Crystal Structure Of Internal Kinesin Motor Domain | 7e-28 | ||
| 2kin_A | 238 | Kinesin (Monomeric) From Rattus Norvegicus Length = | 3e-25 | ||
| 3kin_B | 117 | Kinesin (Dimeric) From Rattus Norvegicus Length = 1 | 7e-10 | ||
| 2kin_B | 100 | Kinesin (Monomeric) From Rattus Norvegicus Length = | 1e-09 |
| >pdb|3H4S|A Chain A, Structure Of The Complex Of A Mitotic Kinesin With Its Calcium Binding Regulator Length = 386 | Back alignment and structure |
|
| >pdb|1SDM|A Chain A, Crystal Structure Of Kinesin-Like Calmodulin Binding Protein Length = 369 | Back alignment and structure |
| >pdb|2H58|A Chain A, Crystal Structure Of The Kifc3 Motor Domain In Complex With Adp Length = 330 | Back alignment and structure |
| >pdb|1GOJ|A Chain A, Structure Of A Fast Kinesin: Implications For Atpase Mechanism And Interactions With Microtubules Length = 355 | Back alignment and structure |
| >pdb|2NCD|A Chain A, Ncd (Non-Claret Disjunctional) Dimer From D. Melanogaster Length = 420 | Back alignment and structure |
| >pdb|1CZ7|A Chain A, The Crystal Structure Of A Minus-End Directed Microtubule Motor Protein Ncd Reveals Variable Dimer Conformations Length = 406 | Back alignment and structure |
| >pdb|3GBJ|A Chain A, Crystal Structure Of The Motor Domain Of Kinesin Kif13b Bound With Adp Length = 354 | Back alignment and structure |
| >pdb|3L1C|A Chain A, Kinesin-14 Protein Ncd, T436s Mutant Length = 383 | Back alignment and structure |
| >pdb|1N6M|A Chain A, Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRYSTAL Structure Of The Kinesin Motor Protein, Ncd Length = 409 | Back alignment and structure |
| >pdb|3U06|A Chain A, Crystal Structure Of The Kinesin-14 Ncdg347d Length = 412 | Back alignment and structure |
| >pdb|4A14|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling Length = 344 | Back alignment and structure |
| >pdb|2VVG|A Chain A, Crystal Structure Of The G.Intestinalis Kinesin 2 Gikin2a Motor Domain Length = 350 | Back alignment and structure |
| >pdb|1BG2|A Chain A, Human Ubiquitous Kinesin Motor Domain Length = 325 | Back alignment and structure |
| >pdb|1MKJ|A Chain A, Human Kinesin Motor Domain With Docked Neck Linker Length = 349 | Back alignment and structure |
| >pdb|3B6U|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin Family Member 3b In Complex With Adp Length = 372 | Back alignment and structure |
| >pdb|4ATX|C Chain C, Rigor Kinesin Motor Domain With An Ordered Neck-Linker, Docked On Tubulin Dimer, Modelled Into The 8a Cryo-Em Map Of Doublecortin-Microtubules Decorated With Kinesin Length = 340 | Back alignment and structure |
| >pdb|4H1G|A Chain A, Structure Of Candida Albicans Kar3 Motor Domain Fused To Maltose- Binding Protein Length = 715 | Back alignment and structure |
| >pdb|2XT3|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling Length = 344 | Back alignment and structure |
| >pdb|4AQV|C Chain C, Model Of Human Kinesin-5 Motor Domain (3hqd) And Mammalian Tubulin Heterodimer (1jff) Docked Into The 9.7-angstrom Cryo-em Map Of Microtubule-bound Kinesin-5 Motor Domain In The Ampppnp State. Length = 373 | Back alignment and structure |
| >pdb|2Y5W|A Chain A, Crystal Structure Of Drosophila Melanogaster Kinesin-1 Motor Domain Dimer Length = 365 | Back alignment and structure |
| >pdb|3B6V|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin Family Member 3c In Complex With Adp Length = 395 | Back alignment and structure |
| >pdb|3HQD|A Chain A, Human Kinesin Eg5 Motor Domain In Complex With Amppnp And Mg2+ Length = 369 | Back alignment and structure |
| >pdb|4A28|A Chain A, Eg5-2 Length = 368 | Back alignment and structure |
| >pdb|1Q0B|A Chain A, Crystal Structure Of The Motor Protein Ksp In Complex With Adp And Monastrol Length = 367 | Back alignment and structure |
| >pdb|4AP0|A Chain A, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And Ispinesib Length = 370 | Back alignment and structure |
| >pdb|1II6|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex With Mg-Adp. Length = 368 | Back alignment and structure |
| >pdb|1X88|A Chain A, Human Eg5 Motor Domain Bound To Mg-Adp And Monastrol Length = 359 | Back alignment and structure |
| >pdb|4A1Z|A Chain A, Eg5-1 Length = 368 | Back alignment and structure |
| >pdb|3BFN|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin Family Member 22 Length = 388 | Back alignment and structure |
| >pdb|3ZCW|A Chain A, Eg5 - New Allosteric Binding Site Length = 348 | Back alignment and structure |
| >pdb|2REP|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin Family Member C1 Length = 376 | Back alignment and structure |
| >pdb|3LRE|A Chain A, Crystal Structure Analysis Of Human Kinesin-8 Motor Domain Length = 355 | Back alignment and structure |
| >pdb|1I5S|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With Mg-Adp Length = 367 | Back alignment and structure |
| >pdb|1I6I|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With Mg-Amppcp Length = 366 | Back alignment and structure |
| >pdb|2OWM|A Chain A, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3) Length = 443 | Back alignment and structure |
| >pdb|4GKR|A Chain A, Structure Of The C-Terminal Motor Domain Of Kar3 From Candida Glabrata Length = 371 | Back alignment and structure |
| >pdb|1IA0|K Chain K, Kif1a Head-Microtubule Complex Structure In Atp-Form Length = 394 | Back alignment and structure |
| >pdb|1VFV|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With Mg-Amppnp Length = 366 | Back alignment and structure |
| >pdb|3T0Q|A Chain A, Motor Domain Structure Of The Kar3-Like Kinesin From Ashbya Gossypii Length = 349 | Back alignment and structure |
| >pdb|2WBE|C Chain C, Kinesin-5-Tubulin Complex With Amppnp Length = 373 | Back alignment and structure |
| >pdb|1F9T|A Chain A, Crystal Structures Of Kinesin Mutants Reveal A Signalling Pathway For Activation Of The Motor Atpase Length = 358 | Back alignment and structure |
| >pdb|1T5C|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinetochore Protein Cenp-E Length = 349 | Back alignment and structure |
| >pdb|4ETP|A Chain A, C-Terminal Motor And Motor Homology Domain Of Kar3vik1 Fused To A Synthetic Heterodimeric Coiled Coil Length = 403 | Back alignment and structure |
| >pdb|3KAR|A Chain A, The Motor Domain Of Kinesin-Like Protein Kar3, A Saccharomyces Cerevisiae Kinesin-Related Protein Length = 346 | Back alignment and structure |
| >pdb|1F9W|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway For Activation Of The Kinesin Motor Atpase Length = 347 | Back alignment and structure |
| >pdb|1F9V|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway For Activation Of The Kinesin Motor Atpase Length = 347 | Back alignment and structure |
| >pdb|1F9U|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway For Activation Of The Kinesin Motor Atpase Length = 347 | Back alignment and structure |
| >pdb|3NWN|A Chain A, Crystal Structure Of The Human Kif9 Motor Domain In Complex With Adp Length = 359 | Back alignment and structure |
| >pdb|3PXN|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member Kin10NOD IN Complex With Divalent Manganese And Adp Length = 344 | Back alignment and structure |
| >pdb|3DC4|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member Nod In Complex With Adp Length = 344 | Back alignment and structure |
| >pdb|1V8J|A Chain A, The Crystal Structure Of The Minimal Functional Domain Of The Microtubule Destabilizer Kif2c Complexed With Mg-adp Length = 410 | Back alignment and structure |
| >pdb|3EDL|D Chain D, Kinesin13-Microtubule Ring Complex Length = 331 | Back alignment and structure |
| >pdb|2GRY|A Chain A, Crystal Structure Of The Human Kif2 Motor Domain In Complex With Adp Length = 420 | Back alignment and structure |
| >pdb|2HEH|A Chain A, Crystal Structure Of The Kif2c Motor Domain (Casp Target) Length = 387 | Back alignment and structure |
| >pdb|1RY6|A Chain A, Crystal Structure Of Internal Kinesin Motor Domain Length = 360 | Back alignment and structure |
| >pdb|2KIN|A Chain A, Kinesin (Monomeric) From Rattus Norvegicus Length = 238 | Back alignment and structure |
| >pdb|3KIN|B Chain B, Kinesin (Dimeric) From Rattus Norvegicus Length = 117 | Back alignment and structure |
| >pdb|2KIN|B Chain B, Kinesin (Monomeric) From Rattus Norvegicus Length = 100 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A* Length = 412 | Back alignment and structure |
|---|
Score = 434 bits (1119), Expect = e-148
Identities = 123/404 (30%), Positives = 204/404 (50%), Gaps = 28/404 (6%)
Query: 49 EQQKNELEQSIINLEGEIVELRLKKRRLDEKRREALNKILDIKGCIRVFCRVRSFLVTGR 108
Q+ EL + E+ + + + + +R+E N ++D++ IRVFCR+R L +
Sbjct: 16 RQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDLRDNIRVFCRIRPPLESEE 75
Query: 109 RVIHEPVLTELEKVV--------VRSGGSKKEFGFDKVFNQAASQEDVFVEVEPILRSAL 160
+ E V +S ++ F FD+VF+ +SQ D+F V P+++SAL
Sbjct: 76 NRMCCTWTYHDESTVELQSIDAQAKSKMGQQIFSFDQVFHPLSSQSDIFEMVSPLIQSAL 135
Query: 161 DGHNVCVLAYGQTGTGKTFTMDGTSDQPGIVPRALEELFRQAALDNSSSVTFSM--SMLE 218
DG+N+C+ AYGQTG+GKT+TMDG + G++PR ++ LF + + + + LE
Sbjct: 136 DGYNICIFAYGQTGSGKTYTMDGVPESVGVIPRTVDLLFDSIRGYRNLGWEYEIKATFLE 195
Query: 219 VYMGSVRDLLAPKPVFKAYEAATRCNLNIQTDAKGTVEIEGLTEVQIPDFTKARWWYNKG 278
+Y + DLL+ + + + + K + + +TE + D R +
Sbjct: 196 IYNEVLYDLLSNEQ--------KDMEIRMAKNNKNDIYVSNITEETVLDPNHLRHLMHTA 247
Query: 279 RRVRSTSWTNVNEASSRSHCLMRITIFRHGDALEAKTEVSKLWMVDLGGSERVLKTGATG 338
+ R+T+ T NE SSRSH + ++ + A + + V + +VDL GSE T
Sbjct: 248 KMNRATASTAGNERSSRSHAVTKLELIGR-HAEKQEISVGSINLVDLAGSES----PKTS 302
Query: 339 QTLDEGRAINLSLSALADVIAALRRKRGHVPYRNSKLTQILRDSLGDGSKVLMLVHASPC 398
+ E + IN SLS L +VI AL +K+ H+PYRNSKLT +L SLG SK LM ++ SP
Sbjct: 303 TRMTETKNINRSLSELTNVILALLQKQDHIPYRNSKLTHLLMPSLGGNSKTLMFINVSPF 362
Query: 399 EEDVGETICSLSFAKRARGIESNRELSEDLKKRREIRMAELEED 442
++ E++ SL FA + + K+ R + +
Sbjct: 363 QDCFQESVKSLRFAASVNSCKMTKA-----KRNRYLNNSVANSS 401
|
| >4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae} Length = 403 | Back alignment and structure |
|---|
| >2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
| >3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A* Length = 369 | Back alignment and structure |
|---|
| >2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens} Length = 376 | Back alignment and structure |
|---|
| >1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A* Length = 347 | Back alignment and structure |
|---|
| >3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii} Length = 349 | Back alignment and structure |
|---|
| >3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens} Length = 388 | Back alignment and structure |
|---|
| >1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A* Length = 325 | Back alignment and structure |
|---|
| >2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A* Length = 365 | Back alignment and structure |
|---|
| >1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9 Length = 355 | Back alignment and structure |
|---|
| >2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis} Length = 350 | Back alignment and structure |
|---|
| >3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A* Length = 372 | Back alignment and structure |
|---|
| >3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} Length = 355 | Back alignment and structure |
|---|
| >4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} PDB: 2xt3_A* Length = 344 | Back alignment and structure |
|---|
| >1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens} Length = 349 | Back alignment and structure |
|---|
| >3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} Length = 354 | Back alignment and structure |
|---|
| >1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ... Length = 359 | Back alignment and structure |
|---|
| >3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A* Length = 344 | Back alignment and structure |
|---|
| >2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster} Length = 373 | Back alignment and structure |
|---|
| >1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9 Length = 360 | Back alignment and structure |
|---|
| >2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C* Length = 366 | Back alignment and structure |
|---|
| >2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa} Length = 443 | Back alignment and structure |
|---|
| >2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D* Length = 387 | Back alignment and structure |
|---|
| >1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A* Length = 410 | Back alignment and structure |
|---|
| >3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9 Length = 117 | Back alignment and structure |
|---|
| >2kin_B Kinesin; motor protein, cytoskeleton; HET: ADP; 2.00A {Rattus norvegicus} SCOP: c.37.1.9 Length = 100 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >4etp_B Spindle POLE BODY-associated protein VIK1; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae} PDB: 1u0i_A Length = 333 | Back alignment and structure |
|---|
| >3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 630 | |||
| 4etp_A | 403 | Kinesin-like protein KAR3; kinesin motor protein, | 100.0 | |
| 3u06_A | 412 | Protein claret segregational; motor domain, stalk | 100.0 | |
| 3cob_A | 369 | Kinesin heavy chain-like protein; motor, switch II | 100.0 | |
| 2rep_A | 376 | Kinesin-like protein KIFC1; structural genomics co | 100.0 | |
| 2h58_A | 330 | Kinesin-like protein KIFC3 variant; motor domain, | 100.0 | |
| 3bfn_A | 388 | Kinesin-like protein KIF22; limited proteolysis, s | 100.0 | |
| 2vvg_A | 350 | Kinesin-2; motor protein, nucleotide-binding, micr | 100.0 | |
| 1t5c_A | 349 | CENP-E protein, centromeric protein E; kinesin mot | 100.0 | |
| 2y65_A | 365 | Kinesin, kinesin heavy chain; motor protein; HET: | 100.0 | |
| 3b6u_A | 372 | Kinesin-like protein KIF3B; structural genomics co | 100.0 | |
| 1goj_A | 355 | Kinesin, kinesin heavy chain; motor protein, ATPas | 100.0 | |
| 3lre_A | 355 | Kinesin-like protein KIF18A; motor protein, nucleo | 100.0 | |
| 3t0q_A | 349 | AGR253WP; kinesin, alpha and beta proteins, P-loop | 100.0 | |
| 2owm_A | 443 | Nckin3-434, related to kinesin-like protein KIF1C; | 100.0 | |
| 1x88_A | 359 | Kinesin-like protein KIF11; switch II, motor domai | 100.0 | |
| 1bg2_A | 325 | Kinesin; motor protein, ATPase, microtubule associ | 100.0 | |
| 1f9v_A | 347 | Kinesin-like protein KAR3; kinesin-related protein | 100.0 | |
| 2zfi_A | 366 | Kinesin-like protein KIF1A, kinesin heavy chain is | 100.0 | |
| 2wbe_C | 373 | Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mit | 100.0 | |
| 2heh_A | 387 | KIF2C protein; kinesin, motor domain, ADP, structu | 100.0 | |
| 4a14_A | 344 | Kinesin, kinesin-like protein KIF7; motor protein, | 100.0 | |
| 3nwn_A | 359 | Kinesin-like protein KIF9; motor domain, ADP, stru | 100.0 | |
| 1v8k_A | 410 | Kinesin-like protein KIF2C; microtubule destabiliz | 100.0 | |
| 2nr8_A | 358 | Kinesin-like protein KIF9; motor domain, ADP, stru | 100.0 | |
| 3gbj_A | 354 | KIF13B protein; kinesin, motor domain, ADP, struct | 100.0 | |
| 1ry6_A | 360 | Internal kinesin; kinesin motor domain, nucleotide | 100.0 | |
| 3dc4_A | 344 | Kinesin-like protein NOD; catalytic domain, ATPase | 100.0 | |
| 4h1g_A | 715 | Maltose binding protein-cakar3 motor domain fusio; | 100.0 | |
| 2o0a_A | 298 | S.cerevisiae chromosome XVI reading frame ORF YPL2 | 100.0 | |
| 2kin_B | 100 | Kinesin; motor protein, cytoskeleton; HET: ADP; 2. | 99.96 | |
| 3kin_B | 117 | Kinesin heavy chain; motor protein, cytoskeleton; | 99.96 | |
| 4etp_B | 333 | Spindle POLE BODY-associated protein VIK1; kinesin | 98.72 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 94.95 | |
| 4gkp_A | 275 | Spindle POLE BODY-associated protein VIK1; kinesin | 94.91 | |
| 2w58_A | 202 | DNAI, primosome component (helicase loader); ATP-b | 93.93 | |
| 4b4t_K | 428 | 26S protease regulatory subunit 6B homolog; hydrol | 92.97 | |
| 2qgz_A | 308 | Helicase loader, putative primosome component; str | 92.02 | |
| 4b4t_J | 405 | 26S protease regulatory subunit 8 homolog; hydrola | 90.51 | |
| 4b4t_M | 434 | 26S protease regulatory subunit 6A; hydrolase, AAA | 89.55 | |
| 4b4t_L | 437 | 26S protease subunit RPT4; hydrolase, AAA-atpases, | 87.97 | |
| 2bjv_A | 265 | PSP operon transcriptional activator; AAA, transcr | 87.04 | |
| 3bos_A | 242 | Putative DNA replication factor; P-loop containing | 86.49 | |
| 1jbk_A | 195 | CLPB protein; beta barrel, chaperone; 1.80A {Esche | 86.35 | |
| 1l8q_A | 324 | Chromosomal replication initiator protein DNAA; AA | 85.36 | |
| 2p65_A | 187 | Hypothetical protein PF08_0063; CLPB, malaria, str | 84.46 | |
| 2v1u_A | 387 | Cell division control protein 6 homolog; DNA repli | 83.52 | |
| 3uk6_A | 368 | RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding | 83.41 | |
| 2r62_A | 268 | Cell division protease FTSH homolog; ATPase domain | 82.75 | |
| 3t15_A | 293 | Ribulose bisphosphate carboxylase/oxygenase activ | 82.45 | |
| 4b4t_I | 437 | 26S protease regulatory subunit 4 homolog; hydrola | 82.16 | |
| 1d2n_A | 272 | N-ethylmaleimide-sensitive fusion protein; hexamer | 81.6 | |
| 1fnn_A | 389 | CDC6P, cell division control protein 6; ORC1, AAA | 81.55 | |
| 1qde_A | 224 | EIF4A, translation initiation factor 4A; DEAD box | 80.36 |
| >4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-96 Score=793.24 Aligned_cols=371 Identities=33% Similarity=0.452 Sum_probs=314.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCEEEEEEeCCCCcccCCCccccEEec---C----CE
Q 006826 49 EQQKNELEQSIINLEGEIVELRLKKRRLDEKRREALNKILDIKGCIRVFCRVRSFLVTGRRVIHEPVLTE---L----EK 121 (630)
Q Consensus 49 ~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~Rr~l~n~~~elkG~IrV~~RvRP~~~~e~~~~~~~v~~~---~----~~ 121 (630)
++...+|++.+++++.++.++.+++.+++..||+|||+++|+||||||||||||+...+.......+.+. + ..
T Consensus 16 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~elkgnIrV~vRvRP~~~~~e~~~~~~~~v~~~~~~~~~~~ 95 (403)
T 4etp_A 16 KEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQELRGNIRVYLRIRPALKNLENSDTSLINVNEFDDNSGVQS 95 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSEEEEEEECCCCTTTSCSCCTTEEECCCBTTTTBEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCCCCcccccCCCeeEEeeccCCCCceE
Confidence 5567899999999999999999999999999999999999999999999999999876332233333332 1 13
Q ss_pred EEEEeC---CceEEEEeceeeCCCCChhhHHHhhHHHHHHhhcCcceeEEecccCCCCcceeecCCCCCCCchhHHHHHH
Q 006826 122 VVVRSG---GSKKEFGFDKVFNQAASQEDVFVEVEPILRSALDGHNVCVLAYGQTGTGKTFTMDGTSDQPGIVPRALEEL 198 (630)
Q Consensus 122 v~v~~~---~~~~~F~FD~VF~~~atQ~eVf~~v~plV~svl~GyN~~IfaYGqTGSGKTyTM~G~~~~~GIIpRal~~L 198 (630)
+.+... ...+.|.||+||+++++|++||++|.|+|+++++|||+||||||||||||||||+|+ ++|||||++++|
T Consensus 96 ~~~~~~~~~~~~~~F~FD~VF~~~~~Q~~Vf~~v~~lv~~~l~G~N~tifAYGqTGSGKTyTM~g~--~~Giipr~~~~l 173 (403)
T 4etp_A 96 MEVTKIQNTAQVHEFKFDKIFDQQDTNVDVFKEVGQLVQSSLDGYNVAIFAYGQTGSGKTFTMLNP--GDGIIPSTISHI 173 (403)
T ss_dssp EEEEECSSSCEEEEEEESEEECTTCCHHHHHHHHHHHHHHHHTTCCEEEEEESCTTSSHHHHHHCT--TTSHHHHHHHHH
T ss_pred EEEecCCCCcCceEEEcCEEECCCCchHHHHHHHHHHHHHHhCCcceEEEEECCCCCCCceEeCCC--CCccchhHHHHH
Confidence 444332 234899999999999999999999999999999999999999999999999999996 469999999999
Q ss_pred HHHHhc--CCCceEEEEEeEEEEecceeeecCCCCCccchhhhhcccCeeEEeCC-CCCEEEcCcEEEEcCChHHHHHHH
Q 006826 199 FRQAAL--DNSSSVTFSMSMLEVYMGSVRDLLAPKPVFKAYEAATRCNLNIQTDA-KGTVEIEGLTEVQIPDFTKARWWY 275 (630)
Q Consensus 199 F~~~~~--~~~~~~~v~vS~lEIYnE~I~DLL~~~~~~~~~~~~~~~~L~i~ed~-~g~v~v~glt~v~V~s~~e~~~ll 275 (630)
|..+.. ..+|.|.|.|||+|||||+|+|||.+....... ......+.+++++ .++++|.|++++.|.++++++.+|
T Consensus 174 F~~i~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~~~-~~~~~~~~i~~~~~~~~~~v~~l~~~~v~s~~e~~~ll 252 (403)
T 4etp_A 174 FNWINKLKTKGWDYKVNAEFIEIYNENIVDLLRSDNNNKED-TSIGLKHEIRHDQETKTTTITNVTSVKLESEEMVEIIL 252 (403)
T ss_dssp HHHHHHHHTTTEEEEEEEEEEEEETTEEEETTCC---------CCSCCCCEEEETTTTEEEETTCCCEECCCHHHHHHHH
T ss_pred HHHHHhhhccCceEEEEEEEEEEecceeeEccCCccccccc-cccCcceeeEEeCCCCCEEecCcEEEEeCCHHHHHHHH
Confidence 998764 457899999999999999999999886532111 1122346777665 578999999999999999999999
Q ss_pred HhhhhcccccccCCCCCCCCcEEEEEEEEEEecCCCCCceEEeEeEEEecCCCccccccCCCcchhhhhhhhhHhHHHHH
Q 006826 276 NKGRRVRSTSWTNVNEASSRSHCLMRITIFRHGDALEAKTEVSKLWMVDLGGSERVLKTGATGQTLDEGRAINLSLSALA 355 (630)
Q Consensus 276 ~~g~~~R~~~~T~~N~~SSRSH~If~I~v~~~~~~~~~~~~~skL~lVDLAGSEr~~kt~a~g~rl~E~~~INkSLsaLg 355 (630)
..|.++|++++|.||+.|||||+||+|+|.+.+... +....|+|+|||||||||+.++++.|++++|+.+||+||++||
T Consensus 253 ~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~-~~~~~~kL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg 331 (403)
T 4etp_A 253 KKANKLRSTASTASNEHSSRSHSIFIIHLSGSNAKT-GAHSYGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSALG 331 (403)
T ss_dssp HHHC--C----CHHHHHHHTSEEEEEEEEEEEETTT-CCEEEEEEEEEECCCCCCCCCSSCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcccccccCCcccCCcccEEEEEEEEeecCC-CCeeEEEEEEEECCCCccccccCChhHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999876555 5667899999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCC---CccCCCCchhhhhhcccCCCceeeeEEecCCCCCcHHHhHHHHHHHHHhhccccccc
Q 006826 356 DVIAALRRKRG---HVPYRNSKLTQILRDSLGDGSKVLMLVHASPCEEDVGETICSLSFAKRARGIESNRE 423 (630)
Q Consensus 356 ~VI~aL~~~~~---hiPYRdSKLT~LLqdsLgGnskT~mI~~VSP~~~~~~ETlsTLrFA~rar~I~~~~~ 423 (630)
+||.||+.+.. ||||||||||+||||+|||||+|+||+||||+..+++||++||+||+||++|+.++.
T Consensus 332 ~vI~aL~~~~~~~~hiPyRdSkLT~LLqdsLgGnskt~mi~~vsP~~~~~~ETl~TL~fA~rv~~~~~~~r 402 (403)
T 4etp_A 332 DVIHALGQPDSTKRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKVNSTRLVSR 402 (403)
T ss_dssp HHHHHHTSSCTTTSCCCGGGSHHHHHTGGGTSTTCEEEEEEEECCSGGGHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHhcccCCCCcCCcccchHHHHHHHhcCCCceEEEEEEeCCchhhHHHHHHHHHHHHHHhhcccCCC
Confidence 99999987654 999999999999999999999999999999999999999999999999999998763
|
| >3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A* | Back alignment and structure |
|---|
| >3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A* | Back alignment and structure |
|---|
| >2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
| >2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
| >3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
| >2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis} | Back alignment and structure |
|---|
| >1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
| >2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A* | Back alignment and structure |
|---|
| >3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A* | Back alignment and structure |
|---|
| >1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9 | Back alignment and structure |
|---|
| >3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
| >3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii} | Back alignment and structure |
|---|
| >2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa} | Back alignment and structure |
|---|
| >1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ... | Back alignment and structure |
|---|
| >1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A* | Back alignment and structure |
|---|
| >1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A* | Back alignment and structure |
|---|
| >2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C* | Back alignment and structure |
|---|
| >2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster} | Back alignment and structure |
|---|
| >2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D* | Back alignment and structure |
|---|
| >4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A* | Back alignment and structure |
|---|
| >3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
| >1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A* | Back alignment and structure |
|---|
| >3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9 | Back alignment and structure |
|---|
| >1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9 | Back alignment and structure |
|---|
| >3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A* | Back alignment and structure |
|---|
| >4h1g_A Maltose binding protein-cakar3 motor domain fusio; kinesin motor domain, motor protein, chimera; HET: MTT ADP EDO; 2.15A {Escherichia coli} | Back alignment and structure |
|---|
| >2o0a_A S.cerevisiae chromosome XVI reading frame ORF YPL253C; VIK1, motor homology domain, kinesin, motor domain, microtubule-binding; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >2kin_B Kinesin; motor protein, cytoskeleton; HET: ADP; 2.00A {Rattus norvegicus} SCOP: c.37.1.9 | Back alignment and structure |
|---|
| >3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9 | Back alignment and structure |
|---|
| >4etp_B Spindle POLE BODY-associated protein VIK1; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
| >4gkp_A Spindle POLE BODY-associated protein VIK1; kinesin motor domain-like fold, microtubule binding protein, KAR3, structural protein; 2.42A {Candida glabrata} PDB: 4gkq_A | Back alignment and structure |
|---|
| >2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426} | Back alignment and structure |
|---|
| >4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3} | Back alignment and structure |
|---|
| >4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A* | Back alignment and structure |
|---|
| >3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A | Back alignment and structure |
|---|
| >1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
| >1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A* | Back alignment and structure |
|---|
| >2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
| >2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
| >3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D* | Back alignment and structure |
|---|
| >2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A* | Back alignment and structure |
|---|
| >3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A | Back alignment and structure |
|---|
| >4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A* | Back alignment and structure |
|---|
| >1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
| >1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 630 | ||||
| d1bg2a_ | 323 | c.37.1.9 (A:) Kinesin {Human (Homo sapiens) [TaxId | 5e-75 | |
| d2ncda_ | 368 | c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjun | 5e-74 | |
| d1f9va_ | 342 | c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjun | 1e-70 | |
| d1x88a1 | 345 | c.37.1.9 (A:18-362) Kinesin {Human (Homo sapiens), | 3e-70 | |
| d1goja_ | 354 | c.37.1.9 (A:) Kinesin {Neurospora crassa [TaxId: 5 | 6e-69 | |
| d1ry6a_ | 330 | c.37.1.9 (A:) Kinesin {Malaria parasite (Plasmodiu | 8e-69 | |
| d1sdma_ | 364 | c.37.1.9 (A:) Kinesin heavy chain-like protein {Po | 2e-67 | |
| d2zfia1 | 349 | c.37.1.9 (A:4-352) Kinesin {Mouse (Mus musculus), | 3e-65 | |
| d1v8ka_ | 362 | c.37.1.9 (A:) Kinesin {Mouse (Mus musculus), kif2c | 4e-64 |
| >d1bg2a_ c.37.1.9 (A:) Kinesin {Human (Homo sapiens) [TaxId: 9606]} Length = 323 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Kinesin species: Human (Homo sapiens) [TaxId: 9606]
Score = 240 bits (614), Expect = 5e-75
Identities = 117/337 (34%), Positives = 181/337 (53%), Gaps = 21/337 (6%)
Query: 89 DIKGC-IRVFCRVRSFLVTGRRVIHEPVLT-ELEKVVVRSGGSKKEFGFDKVFNQAASQE 146
D+ C I+V CR R + + + + E VV + K + FD+VF + SQE
Sbjct: 1 DLAECNIKVMCRFRPLNESEVNRGDKYIAKFQGEDTVVIA---SKPYAFDRVFQSSTSQE 57
Query: 147 DVFVE-VEPILRSALDGHNVCVLAYGQTGTGKTFTMDGTS---DQPGIVPRALEELFRQA 202
V+ + + I++ L+G+N + AYGQT +GKT TM+G + GI+PR ++++F
Sbjct: 58 QVYNDCAKKIVKDVLEGYNGTIFAYGQTSSGKTHTMEGKLHDPEGMGIIPRIVQDIFNYI 117
Query: 203 AL-DNSSSVTFSMSMLEVYMGSVRDLLAPKPVFKAYEAATRCNLNIQTDAKGTVEIEGLT 261
D + +S E+Y+ +RDLL NL++ D ++G T
Sbjct: 118 YSMDENLEFHIKVSYFEIYLDKIRDLLDVSK----------TNLSVHEDKNRVPYVKGCT 167
Query: 262 EVQIPDFTKARWWYNKGRRVRSTSWTNVNEASSRSHCLMRITIFRHGDALEAKTEVSKLW 321
E + + ++G+ R + TN+NE SSRSH + I + + E K KL+
Sbjct: 168 ERFVCSPDEVMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLINVKQENTQTEQKL-SGKLY 226
Query: 322 MVDLGGSERVLKTGATGQTLDEGRAINLSLSALADVIAALRRKRGHVPYRNSKLTQILRD 381
+VDL GSE+V KTGA G LDE + IN SLSAL +VI+AL +VPYR+SK+T+IL+D
Sbjct: 227 LVDLAGSEKVSKTGAEGAVLDEAKNINKSLSALGNVISALAEGSTYVPYRDSKMTRILQD 286
Query: 382 SLGDGSKVLMLVHASPCEEDVGETICSLSFAKRARGI 418
SLG + +++ SP + ET +L F +RA+ I
Sbjct: 287 SLGGNCRTTIVICCSPSSYNESETKSTLLFGQRAKTI 323
|
| >d2ncda_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 368 | Back information, alignment and structure |
|---|
| >d1f9va_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional) {Baker's yeast (Saccharomyces cerevisiae), Kar [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
| >d1x88a1 c.37.1.9 (A:18-362) Kinesin {Human (Homo sapiens), mitotic kinesin eg5 [TaxId: 9606]} Length = 345 | Back information, alignment and structure |
|---|
| >d1goja_ c.37.1.9 (A:) Kinesin {Neurospora crassa [TaxId: 5141]} Length = 354 | Back information, alignment and structure |
|---|
| >d1ry6a_ c.37.1.9 (A:) Kinesin {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} Length = 330 | Back information, alignment and structure |
|---|
| >d1sdma_ c.37.1.9 (A:) Kinesin heavy chain-like protein {Potato (Solanum tuberosum) [TaxId: 4113]} Length = 364 | Back information, alignment and structure |
|---|
| >d2zfia1 c.37.1.9 (A:4-352) Kinesin {Mouse (Mus musculus), kif1a [TaxId: 10090]} Length = 349 | Back information, alignment and structure |
|---|
| >d1v8ka_ c.37.1.9 (A:) Kinesin {Mouse (Mus musculus), kif2c [TaxId: 10090]} Length = 362 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 630 | |||
| d2ncda_ | 368 | Kinesin motor Ncd (non-claret disjunctional) {Frui | 100.0 | |
| d1sdma_ | 364 | Kinesin heavy chain-like protein {Potato (Solanum | 100.0 | |
| d1goja_ | 354 | Kinesin {Neurospora crassa [TaxId: 5141]} | 100.0 | |
| d1v8ka_ | 362 | Kinesin {Mouse (Mus musculus), kif2c [TaxId: 10090 | 100.0 | |
| d1f9va_ | 342 | Kinesin motor Ncd (non-claret disjunctional) {Bake | 100.0 | |
| d1x88a1 | 345 | Kinesin {Human (Homo sapiens), mitotic kinesin eg5 | 100.0 | |
| d1bg2a_ | 323 | Kinesin {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d2zfia1 | 349 | Kinesin {Mouse (Mus musculus), kif1a [TaxId: 10090 | 100.0 | |
| d1ry6a_ | 330 | Kinesin {Malaria parasite (Plasmodium falciparum) | 100.0 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 94.26 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 90.34 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 90.33 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 90.03 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 88.54 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 84.98 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 84.59 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 83.93 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 82.68 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 82.46 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 82.33 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 81.77 |
| >d2ncda_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Kinesin motor Ncd (non-claret disjunctional) species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=100.00 E-value=2e-86 Score=710.14 Aligned_cols=356 Identities=34% Similarity=0.517 Sum_probs=312.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCEEEEEEeCCCCcccCCCccc-cEEecCCEEEEEeC-
Q 006826 50 QQKNELEQSIINLEGEIVELRLKKRRLDEKRREALNKILDIKGCIRVFCRVRSFLVTGRRVIHE-PVLTELEKVVVRSG- 127 (630)
Q Consensus 50 ~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~Rr~l~n~~~elkG~IrV~~RvRP~~~~e~~~~~~-~v~~~~~~v~v~~~- 127 (630)
+...+|...++++..++..+..++.+.+..||+|||+|.|+||||||+|||||+...|...... ++..+...+.+...
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~gnIkV~vRvRP~~~~E~~~~~~~~~~~~~~~v~~~~~~ 82 (368)
T d2ncda_ 3 QRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDLRGNIRVFCRIRPPLESEENRMCCTWTYHDESTVELQSID 82 (368)
T ss_dssp SSSGGGTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSEEEEEEECCCCGGGTTSCBCEEEEETTTEEEEECSC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCEEEEEEeCCCCchhcCCCCcEEEeCCCCeEEEccCC
Confidence 3446778888999999999999999999999999999999999999999999998877544433 33445666766532
Q ss_pred ------CceEEEEeceeeCCCCChhhHHHhhHHHHHHhhcCcceeEEecccCCCCcceeecCCCCCCCchhHHHHHHHHH
Q 006826 128 ------GSKKEFGFDKVFNQAASQEDVFVEVEPILRSALDGHNVCVLAYGQTGTGKTFTMDGTSDQPGIVPRALEELFRQ 201 (630)
Q Consensus 128 ------~~~~~F~FD~VF~~~atQ~eVf~~v~plV~svl~GyN~~IfaYGqTGSGKTyTM~G~~~~~GIIpRal~~LF~~ 201 (630)
...+.|.||+||+++++|++||+.|.|+|+++++|||+||||||||||||||||+|+++++|||||++++||+.
T Consensus 83 ~~~~~~~~~~~F~FD~vf~~~~~Q~~Vy~~v~plv~~vl~G~n~ti~aYGqtGSGKT~Tm~G~~~~~Giipr~~~~Lf~~ 162 (368)
T d2ncda_ 83 AQAKSKMGQQIFSFDQVFHPLSSQSDIFEMVSPLIQSALDGYNICIFAYGQTGSGKTYTMDGVPESVGVIPRTVDLLFDS 162 (368)
T ss_dssp HHHHTTTCCCEEECSEEECTTCCHHHHHTTTHHHHHHHHTTCEEEEEEECSTTSSHHHHHTEETTEECHHHHHHHHHHHH
T ss_pred ccccCCcCceeeECCeEECCCCCccchHHHHHHHHHHHhcccceeEEeeccCCCccceEecccccccchhhHHHHHHhhh
Confidence 23478999999999999999998889999999999999999999999999999999999999999999999997
Q ss_pred Hhc--CCCceEEEEEeEEEEecceeeecCCCCCccchhhhhcccCeeEEeCCCCCEEEcCcEEEEcCChHHHHHHHHhhh
Q 006826 202 AAL--DNSSSVTFSMSMLEVYMGSVRDLLAPKPVFKAYEAATRCNLNIQTDAKGTVEIEGLTEVQIPDFTKARWWYNKGR 279 (630)
Q Consensus 202 ~~~--~~~~~~~v~vS~lEIYnE~I~DLL~~~~~~~~~~~~~~~~L~i~ed~~g~v~v~glt~v~V~s~~e~~~ll~~g~ 279 (630)
+.. +.++.|.|.+||+|||||+|+|||++.... ....+.+++.+++++.|++++.|.+++++..++..|.
T Consensus 163 ~~~~~~~~~~~~v~vS~~EIyne~i~DLL~~~~~~--------~~~~~~~d~~~~~~v~g~~~~~v~~~~~~~~~l~~g~ 234 (368)
T d2ncda_ 163 IRGYRNLGWEYEIKATFLEIYNEVLYDLLSNEQKD--------MEIRMAKNNKNDIYVSNITEETVLDPNHLRHLMHTAK 234 (368)
T ss_dssp HHHHHTTSCEEEEEEEEEEESSSCEEETTCSSCCC--------CCEEECTTCTTCEEETTCCCEEECSHHHHHHHHHHHH
T ss_pred hhhhccccccceEEEEEEEEecceeeccccccccc--------ccceeeccccccccccccceeccCCHHHHHHHHHHHH
Confidence 653 457789999999999999999999876541 2356778999999999999999999999999999999
Q ss_pred hcccccccCCCCCCCCcEEEEEEEEEEecCCCCCceEEeEeEEEecCCCccccccCCCcchhhhhhhhhHhHHHHHHHHH
Q 006826 280 RVRSTSWTNVNEASSRSHCLMRITIFRHGDALEAKTEVSKLWMVDLGGSERVLKTGATGQTLDEGRAINLSLSALADVIA 359 (630)
Q Consensus 280 ~~R~~~~T~~N~~SSRSH~If~I~v~~~~~~~~~~~~~skL~lVDLAGSEr~~kt~a~g~rl~E~~~INkSLsaLg~VI~ 359 (630)
++|.++.|.+|..|||||+||+|+|....... .....|+|+||||||+|+.. .+.+++|+..||+||++|++||.
T Consensus 235 ~~r~~~~t~~n~~ssrSh~i~~i~v~~~~~~~-~~~~~s~l~~VDLAGse~~~----~~~~~~E~~~IN~SL~aL~~vi~ 309 (368)
T d2ncda_ 235 MNRATASTAGNERSSRSHAVTKLELIGRHAEK-QEISVGSINLVDLAGSESPK----TSTRMTETKNINRSLSELTNVIL 309 (368)
T ss_dssp HHSCCCSSSCTTTTTTCEEEEEEEEEEECTTS-CCEEEEEEEEEECCCCCCC--------------CTTHHHHHHHHHHH
T ss_pred hhcccccccccccccccceEEEEEEEEEecCC-CceEeeeeeeeeeccccccc----hhhhhcccccchhhHHHHHHHHH
Confidence 99999999999999999999999998876554 66788999999999999854 46789999999999999999999
Q ss_pred HHHhCCCCccCCCCchhhhhhcccCCCceeeeEEecCCCCCcHHHhHHHHHHHHHhhcc
Q 006826 360 ALRRKRGHVPYRNSKLTQILRDSLGDGSKVLMLVHASPCEEDVGETICSLSFAKRARGI 418 (630)
Q Consensus 360 aL~~~~~hiPYRdSKLT~LLqdsLgGnskT~mI~~VSP~~~~~~ETlsTLrFA~rar~I 418 (630)
+|++++.|||||+||||+||+|+|||||+|+||+||||+..+++||++||+||+||+++
T Consensus 310 aL~~~~~~iPyR~SkLT~lL~dsLggns~t~mI~~isp~~~~~~eTl~TL~fa~rak~~ 368 (368)
T d2ncda_ 310 ALLQKQDHIPYRNSKLTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFAASVNSC 368 (368)
T ss_dssp HHHTTCSCCCGGGSHHHHHHGGGSSSSCEEEEEEEECCBGGGHHHHHHHHHHHHHHTTC
T ss_pred HHhcCCCCCCCcCCHHHHHHHHhcCCCCeEEEEEEECCChhhHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999874
|
| >d1sdma_ c.37.1.9 (A:) Kinesin heavy chain-like protein {Potato (Solanum tuberosum) [TaxId: 4113]} | Back information, alignment and structure |
|---|
| >d1goja_ c.37.1.9 (A:) Kinesin {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
| >d1v8ka_ c.37.1.9 (A:) Kinesin {Mouse (Mus musculus), kif2c [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1f9va_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional) {Baker's yeast (Saccharomyces cerevisiae), Kar [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1x88a1 c.37.1.9 (A:18-362) Kinesin {Human (Homo sapiens), mitotic kinesin eg5 [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1bg2a_ c.37.1.9 (A:) Kinesin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2zfia1 c.37.1.9 (A:4-352) Kinesin {Mouse (Mus musculus), kif1a [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1ry6a_ c.37.1.9 (A:) Kinesin {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|