Citrus Sinensis ID: 006855

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------63
Protein Sequence
MIITNNGWGITPATQTQLRRRPPPPRFQCLDLSVKKSSTPTSSLSFVLGCYSFPSSSKYKKVKHPLPQPLCCLCSDNTHSTNTNNTISSSSLDWDWNRWTRHFSEIEQAESYASLLKFQLEDAIEREDFEEAANLKNAIAEAASKDTVAEIMAQLKNAIDEERYHDASRLCRYTGSGLVGWWVGYSKDSDDPFGRLIQIKPGVGRFVARNYSPRQLVTASPGTPLFEIFVVKDNEESYVMQVVHLKQAKGTSTNSTSSPSKSTKSPSTSEVENASVVDVQGTKVKEERSDEKGINIEGVTEEGIKSVINFLKEKIPGLKVKVMNIDITAEVTDDADSLKQLIQDGEEAESSDSEGEADDIEEIQPDEVALEGANEASEDEKELDTKVFIGGVVHNNEDAPTKDEYVRMPADVKDLEKDSFVLHVPAKSLDYDHTGESKMSKLKVAALAAQGVSELMPFDVAKAFWSSDKASSKVSRDVREVLKLAVSQAQKQSRLSEYTTFSRINTSEGDLDPFDGLYVGAFGPYGTEVVQLRRKYGQWSGEGEKSSDMEFFEYVEAVKLTGDLNVPAGEVTFRAKIGKGSRLPNRGKFPDELGVVASYSGQGRIADFGFRNPKWVDGELLQLNGKVV
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccEEEcccccccccccccEEEEccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEEEEcccccccccccEEEEEcccccEEEEcccHHHHccccccccEEEEEEEEcccccEEEEEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccccccEEEEEEEccccccccccHHHHHHHHccccccccccccccccccccccccccccccccccccccccEEEEEEEEEEccccccccccccccccccccccccccEEEEEcccccccccccccccHHHHHHHHHHccccccccHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHccccccEEEEcccccccccccccccEEEEcccccccEEEEEEEcccccccccccccccccEEEEEEEEEcccccccccEEEEEEEEccccccccccccccccccEEEEEcccccccccccccccccEEEEEEccccc
Secondary Structure Prediction (SSPRO)
cEEEcccccccccccccccccccccccEEEEEcccccccccccEEEEEEEEcccccccccccccccccccEEEEcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEEccccccccEEEEEEccccccEEEEcccHHHHHHccccccEEEEEEEEcccccEEEEEEEEEccccccccccccccccccccccccccccccEEEEcccccccccccccccccccHHcccHHHHHHHHccccccEEEEEEEEccHHHccccccHHHHHcccccccccccccccccccccccccEEEcccccccccccccEEEEEEEEEEEcccccccccccEEEccEEEcccccEEEEEEccccccccccccccccHHHHHHHHHccccccccHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHcccccccEEEEccEEccccccccccEEEEEcccccccEEEEEEEcccccccccccccccEEEEEEEEEEEcccccccccEEEEEEEEcccccccccccccHHccEEEEEccccEEcccccccccccccEEEEEcccEc
Coil and Loop (DISEMBL)
miitnngwgitpatqtqlrrrpppprfqcldlsvkksstptsslsfvlgcysfpssskykkvkhplpqplcclcsdnthstntnntissssldwdwnrwtrhFSEIEQAESYASLLKFQLEDAIEREDFEEAANLKNAIAEAASKDTVAEIMAQLKNAIDEERYHDASRLCRYTGSGLVGWwvgyskdsddpfgrliqikpgvgrfvarnysprqlvtaspgtplFEIFVVKDNEESYVMQVVHLKqakgtstnstsspskstkspstsevenasvvdvqgtkvkeersdekginiegvTEEGIKSVINFLKekipglkvkvMNIDITAEVTDDADSLKQLIQDgeeaessdsegeaddieeiqpdevaleganeasedekeldTKVFIGGvvhnnedaptkdeyvrmpadvkdlekdsfvlhvpaksldydhtgeskMSKLKVAALAAQgvselmpfDVAKAfwssdkasskvsRDVREVLKLAVSQAQkqsrlseyttfsrintsegdldpfdglyvgafgpygtEVVQLRRKYgqwsgegekssdmEFFEYVEAVKLtgdlnvpagevtfrakigkgsrlpnrgkfpdelgvvasysgqgriadfgfrnpkwvdgellqlngkvv
Flexible Loop (DISEMBL)
miitnngwgitpatqtqlrrrppppRFQCLDlsvkksstptsslsFVLGCYSFPSSSKYKKVKHPLPQPLCCLCSDNTHSTNTnntissssldwdwNRWTRHFSEIEQAESYASLLKFQLEDAIEREDFEEAANLKNAIaeaaskdtVAEIMAQLKNAIDEERYHDASRLCRYTGSGLVGWWVGYSKDSDDPFGRLIQIKPGVGRFVARNYSPrqlvtaspgtpLFEIFVVKDNEESYVMQVVHLKqakgtstnstsspskstkspstsevenasvvdvqgtkvkeersdekginiegvteegIKSVINFLKEKIPGLKVKVMNIDITAEVTDDADSLKQLIQDGEeaessdsegeaddieeiqPDEVALEGANEASEDEKELDTKVFIGgvvhnnedaptkdeyVRMPADVKDLEKDSFVLHVPAKSLDYDHTGESKMSKLKVAALAAQGVSELMPFDVAKAFwssdkasskvsrDVREVLKLAVsqaqkqsrlseyttfsrintsegdldpFDGLYVGAFGPYGTEVVQLRRKYGQWsgegekssdMEFFEYVEAVKLtgdlnvpaGEVTFrakigkgsrlpnrgkfpdELGVVASYSGQGRIADFGfrnpkwvdgellqlngkvv
Low Complexity Region (SEG)
MIITNNGWGITPATQTQLrrrpppprFQCLDLSVKKSSTPTSSLSFVLGCYSFPSSSKYKKVKHPLPQPLCCLCsdnthstntnntissssLDWDWNRWTRHFSEIEQAESYASLLKFQLEDAIEREDFeeaanlknaiaeaaSKDTVAEIMAQLKNAIDEERYHDASRLCRYTGSGLVGWWVGYSKDSDDPFGRLIQIKPGVGRFVARNYSPRQLVTASPGTPLFEIFVVKDNEESYVMQVVHLKQAKGtstnstsspskstkspstsEVENASVVDVQGTKVKEERSDEKGINIEGVTEEGIKSVINFLKEKIPGLKVKVMNIDITAEVTDDADSLKQLIQdgeeaessdsegeaddieeiQPDEVALEGANEASEDEKELDTKVFIGGVVHNNEDAPTKDEYVRMPADVKDLEKDSFVLHVPAKSLDYDHTGESKMSKLKVAALAAQGVSELMPFDVAKAFWSSDKASSKVSRDVREVLKLAVSQAQKQSRLSEYTTFSRINTSEGDLDPFDGLYVGAFGPYGTEVVQLRRKYGQWSGEGEKSSDMEFFEYVEAVKLTGDLNVPAGEVTFRAKIGKGSRLPNRGKFPDELGVVASYSGQGRIADFGFRNPKWVDGELLQLNGKVV
Disordered region (IsUnstruct)
*******************************************LSFVLGCYSFPSSSKYKKVKHPLPQPLCCLCSDNTH******TISSSSLDWDWNRWTRHFSEIEQAESYASLLKFQLEDAIEREDFEEAANLKNAIAEAASKDTVAEIMAQLKNAIDEERYHDASRLCRYTGSGLVGWWVGYSKDSDDPFGRLIQIKPGVGRFVARNYSPRQLVTASPGTPLFEIFVVKDNEESYVMQVVHL*************************************************NIEGVTEEGIKSVINFLKEKIPGLKVKVMNIDITAEVT*****************************************************KVFIGGVVH***********************DSFVLHVPAKSLDY**********LKVAALAAQGVSELMPFDVAKAFWS*******************************YTTFSRINTSEGDLDPFDGLYVGAFGPYGTEVVQLRRKYGQWSG******DMEFFEYVEAVKLTGDLNVPAGEVTFRAKIGKGSRL**RGKFPDELGVVASYSGQGRIADFGFRNPKWVDGELLQL*****
Disordered Region (DISOPRED)
*******WGITPATQTQLRRRPPPPRFQ***************LSFVLGCYSFP*******************************************RWTRHFSEIEQAESYASLLKFQLEDAIEREDFEEAANLKNAIAEAASKDTVAEIMAQLKNAIDEERYHDASRLCRYTGSGLVGWWVGYSKDSDDPFGRLIQIKPGVGRFVARNYSPRQLVTASPGTPLFEIFVVKDNEESYVMQVVHL*************************************************************VINFLKEKIPGLKVKVMNIDI*********************************************************TKVFIGGVVH*******************DLEKDSFVLH*******************************L********************RDVREVLKLAVSQAQKQSRLSEYTTFSRINTSEGDLDPFDGLYVGAFGPYGTEVVQLRRKYGQ**********MEFFEYVEAVKLTGDLNVPAGEVTFRAKIGKGSRLPNRGKFPDELGVVASYSGQGRIADFGFRNPKWVDGELLQLNGKV*
Disordered Region (DISEMBL)
MIITNNGWGITPATQTQLRRRPPPPRFQCLDLS********SSLSFVLGCYSFPSSSKYKKVKHPLPQPLCCLCSDNTHSTNTNNTISSSSLDWDWNRWTRHFSEIEQAESYASLLKFQLEDAIEREDFEEAANLKNAIAEAASKDTVAEIMAQLKNAIDEERYHDASRLCRYTGSGLVGWWVGYSKDSDDPFGRLIQIKPGVGRFVARNYSPRQLVTASPGTPLFEIFVVKDNEESYVMQVVHLK*****************************VVDVQG*********EKGINIEGVTEEGIKSVINFLKEKIPGLKVKVMNIDITAEVTDDADSLKQLIQ***************DIEEIQPDEVAL***********ELDTKVFIGGVVHNNEDAPTKDEYVRMPADVKDLEKDSFVLHVPAKSLDYDHTGESKMSKLKVAALAAQGVSELMPFDVAKAFWS**********DVREVLKLAV***********YTTFSRINTSEGDLDPFDGLYVGAFGPYGTEVVQLRRKYGQWSGEGEKSSDMEFFEYVEAVKLTGDLNVPAGEVTFRAKIGKGSRLPNRGKFPDELGVVASYSGQGRIADFGFRNPKWVDGELLQLNGKVV
Disordered Region (DISPRO)
MIITNNGWGITPATQTQLRRRPPPPRFQCLDLSVKKSSTPTSSLSFVLGCYSFPSSSKYKKVKHPLPQPLCCLCSDNTHS*********SSLDWDWNRWTRHFSEIEQAESYASLLKFQLEDAIEREDFEEAANLKNAIAEAASKDTVAEIMAQLKNAIDEERYHDASRLCRYTGSGLVGWWVGYSKDSDDPFGRLIQIKPGVGRFVARNYSPRQLVTASPGTPLFEIFVVKDNEESYVMQVVHLKQA*****************************************************EGIKSVINFLKEKIPGLKVKVMNIDITAEVTDD*********************************************EKELDTKVFIGGVVHNNEDAPTKDEYVRMPADVKDLEKDSFVLHVPAK**************LKVAAL**QGVSELMPFDVAKAFWSSDKASSKVSRDVREVLKLAVSQAQKQSRLSEYTTFSRINTSEGDLDPFDGLYVGAFGPYGTEVVQLRRKYGQWSGEGEKSSDMEFFEYVEAVKLTGDLNVPAGEVTFRAKIGKGSRLPNRGKFPDELGVVASYSGQGRIADFGFRNPKWVDGELLQLNGKVV
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MIITNNGWGITPATQTQLRRRPPPPRFQCLDLSVKKSSTPTSSLSFVLGCYSFPSSSKYKKVKHPLPQPLCCLCSDNTHSTNTNNTISSSSLDWDWNRWTRHFSEIEQAESYASLLKFQLEDAIEREDFEEAANLKNAIAEAASKDTVAEIMAQLKNAIDEERYHDASRLCRYTGSGLVGWWVGYSKDSDDPFGRLIQIKPGVGRFVARNYSPRQLVTASPGTPLFEIFVVKDNEESYVMQVVHLKQAKGTSTNSTSSPSKSTKSPSTSEVENASVVDVQGTKVKEERSDEKGINIEGVTEEGIKSVINFLKEKIPGLKVKVMNIDITAEVTDDADSLKQLIQDGEEAESSDSEGEADDIEEIQPDEVALEGANEASEDEKELDTKVFIGGVVHNNEDAPTKDEYVRMPADVKDLEKDSFVLHVPAKSLDYDHTGESKMSKLKVAALAAQGVSELMPFDVAKAFWSSDKASSKVSRDVREVLKLAVSQAQKQSRLSEYTTFSRINTSEGDLDPFDGLYVGAFGPYGTEVVQLRRKYGQWSGEGEKSSDMEFFEYVEAVKLTGDLNVPAGEVTFRAKIGKGSRLPNRGKFPDELGVVASYSGQGRIADFGFRNPKWVDGELLQLNGKVV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	628	2.2.26 [Sep-21-2011]
Q93YW0	684	Protein EXECUTER 1, chlor	no	no	0.826	0.758	0.398	3e-97

>sp|Q93YW0|EXEC1_ARATH Protein EXECUTER 1, chloroplastic OS=Arabidopsis thaliana GN=EX1 PE=1 SV=1

 Score =  356 bits (914), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 221/554 (39%), Positives = 320/554 (57%), Gaps = 35/554 (6%)

Query: 98  RWTRHFSEIEQAESYASLLKFQLEDAIEREDFEEAANLKNAIAEAASKDTVAEIMAQLKN 157
           RW +HF +++  +   S+LK QL  AI+RED+E+AA LK AIA  A+ D V ++M+    
Sbjct: 115 RWKKHFDQVDDQDRLLSVLKSQLNRAIKREDYEDAARLKVAIAATATNDAVGKVMSTFYR 174

Query: 158 AIDEERYHDASRLCRYTGSGLVGWWVGYSKDSDDPFGRLIQIKPGVGRFVARNYSPRQLV 217
           A+ EERY DA  L    G+GLVGWW G S+D  DPFG ++QI    GR+VAR+Y+PRQL 
Sbjct: 175 ALLEERYKDAVYLRDKAGAGLVGWWSGISEDVKDPFGLIVQITAEHGRYVARSYNPRQLS 234

Query: 218 TASPGTPLFEIFVVKDNEESYVMQVVHLKQAK-----GTSTNSTSSPSKSTKSPSTSEVE 272
           T++ G PLFEIF+  D + +Y  Q V+LK  +      T  + T +P +   SP   E  
Sbjct: 235 TSAAGAPLFEIFLTLDGKGNYKKQAVYLKWKEIFPDVPTMPSRTLTPGRFLTSPGRKEDT 294

Query: 273 NASVVDVQGTKVKEERSDEKGINIEGVTEEGIKSVINFLKEKIPGLKVKVMNIDITAEVT 332
               V+    +  +   D+  +  E     G +S   FL++ IPG+KVKVM +     V 
Sbjct: 295 GNLAVESSEDEESDNSDDDSDLLEE---SSGFQS---FLRDMIPGVKVKVMKVTAPGRV- 347

Query: 333 DDADSLKQLIQD----------GEEAESSDSEGEADDIEEIQPDEVALEGANEASEDE-- 380
            D D + ++I+            +  +    +    +I+E   D + LE   +   D   
Sbjct: 348 -DKDFISKVIEQIADEEDEENDLDIEDIDVEDDTKAEIDEKNAD-IELESVTDEIIDNNG 405

Query: 381 -KELDTKVFIGGVVHNNEDAPTKDEYVRMPADVKDLEKDSFVLHVPAKSLDYDHTGESKM 439
            +E+  K  IG +V          E +R PA+++ +E  SF L +  K L+   +   + 
Sbjct: 406 GREIAVKFVIGDIVDRLSGNQPLKESLRSPANLESVENSSFYLRL-EKDLNVKESKGVEG 464

Query: 440 SKL---KVAALAAQGVSELMPFDVAKAFWSSDKASSKVSRDVREVLKLAVSQAQKQSRLS 496
           + L   K +  + + +  +M  D+AK+     K S K+ +DV E+L L +SQAQ + +LS
Sbjct: 465 TTLVDGKGSRQSRRRIENIMG-DLAKSIEKEKKISVKMLKDVGELLSLTLSQAQNRQQLS 523

Query: 497 EYTTFSRINTSEGDLDPFDGLYVGAFGPYGTEVVQLRRKYGQWSG--EGEKSSDMEFFEY 554
             T F RI+ +   LDP DGLY+GA G Y +EV+ L+RK+GQW G  E +K +D+EF+EY
Sbjct: 524 GLTKFRRIDVTPS-LDPLDGLYIGAHGLYTSEVIHLKRKFGQWKGGKESKKPTDIEFYEY 582

Query: 555 VEAVKLTGDLNVPAGEVTFRAKIGKGSRLPNRGKFPDELGVVASYSGQGRIADFGFRNPK 614
           VEAVKLTGD  VPAG+V FRAKIG+   LP++G  P+E GV+A Y GQGR+AD GFRNP+
Sbjct: 583 VEAVKLTGDPYVPAGKVAFRAKIGRRYELPHKGLIPEEFGVIARYKGQGRLADPGFRNPR 642

Query: 615 WVDGELLQLNGKVV 628
           WVDGEL+ L+GK V
Sbjct: 643 WVDGELVILDGKYV 656

Enables higher plants to perceive singlet oxygen as a stress signal that activates a genetically determined stress response program.
Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	628
255540691	658	EXECUTER1 protein, chloroplast precursor	0.968	0.924	0.701	0.0
297733793	656	unnamed protein product [Vitis vinifera]	0.977	0.935	0.681	0.0
359491590	648	PREDICTED: protein EXECUTER 1, chloropla	0.960	0.930	0.688	0.0
449518939	657	PREDICTED: protein EXECUTER 1, chloropla	0.950	0.908	0.647	0.0
357462003	630	Protein EXECUTER [Medicago truncatula] g	0.910	0.907	0.640	0.0
449441021	609	PREDICTED: protein EXECUTER 1, chloropla	0.893	0.921	0.664	0.0
356518979	634	PREDICTED: protein EXECUTER 1, chloropla	0.936	0.927	0.600	0.0
356507232	632	PREDICTED: protein EXECUTER 1, chloropla	0.931	0.925	0.597	0.0
297851182	647	predicted protein [Arabidopsis lyrata su	0.942	0.914	0.554	1e-180
18396370	651	uncharacterized protein [Arabidopsis tha	0.944	0.910	0.532	1e-165

>gi|255540691|ref|XP_002511410.1| EXECUTER1 protein, chloroplast precursor, putative [Ricinus communis] gi|223550525|gb|EEF52012.1| EXECUTER1 protein, chloroplast precursor, putative [Ricinus communis]

 Score =  840 bits (2170), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 445/634 (70%), Positives = 518/634 (81%), Gaps = 26/634 (4%)

Query: 6   NGWGITPATQTQLRRRPPPPRFQCLDLSVKKSSTPTSSLSFVLGCYSFP-SSSKYKKVKH 64
           NG+G+  A  T    RP    F C+D S KKS+      SFVL    FP +    K VK 
Sbjct: 5   NGFGLGQAMTTVPHLRP----FCCIDFSAKKSNNS----SFVL----FPDNQHNNKNVKK 52

Query: 65  P------LPQPLCCLCSD-NTHSTNTN----NTISSSSLDWDWNRWTRHFSEIEQAESYA 113
           P           CC CS  NT+S +TN     +   SSLDWDW RW RHFSEIEQ ES+A
Sbjct: 53  PSFSLSRTRSLHCCRCSHSNTNSNSTNLAPSPSPPPSSLDWDWIRWNRHFSEIEQVESFA 112

Query: 114 SLLKFQLEDAIEREDFEEAANLKNAIAEAASKDTVAEIMAQLKNAIDEERYHDASRLCRY 173
           S+LKFQLEDAIE+EDF+EAA LK AIAEA SKD+VAEIM++L+NAIDEERYHDASRLC+Y
Sbjct: 113 SVLKFQLEDAIEKEDFQEAAKLKLAIAEATSKDSVAEIMSELQNAIDEERYHDASRLCKY 172

Query: 174 TGSGLVGWWVGYSKDSDDPFGRLIQIKPGVGRFVARNYSPRQLVTASPGTPLFEIFVVKD 233
           TGSGLVGWWVGYS DSDDPFGRL++I PGVGRFV R+YSPRQLVTASPGTPLFEIFVVKD
Sbjct: 173 TGSGLVGWWVGYSTDSDDPFGRLVRITPGVGRFVGRSYSPRQLVTASPGTPLFEIFVVKD 232

Query: 234 NEESYVMQVVHLKQAKGTSTNSTSSPSKSTKSPSTSEVENASVVDVQGTKVKEERSDEKG 293
            +E YVMQVV L++AK  +TNST SPSKS KSPS SEVE  S +DVQG +VK ERS+EKG
Sbjct: 233 ADERYVMQVVCLQRAKSVATNSTGSPSKSGKSPSPSEVEKESELDVQGNEVKAERSEEKG 292

Query: 294 INIEGVTEEGIKSVINFLKEKIPGLKVKVMNIDITAEVTDDADSLKQLIQDGEE-AESSD 352
           INIEG TEEGIKSVINFLK+KIPGLKVKVMN++ T EV +D DS+KQL+QD E+ A S  
Sbjct: 293 INIEGATEEGIKSVINFLKDKIPGLKVKVMNVNATEEVVEDNDSVKQLMQDDEKIASSES 352

Query: 353 SEGEADDIEEIQPDEVALEGANEASEDEKELDTKVFIGGVVHNNEDAPTKDEYVRMPADV 412
           SE E++++EEIQP  V++EG  + ++D K+LD K+FIGGVVHN+ED P+KDEYVR+PA++
Sbjct: 353 SEDESNELEEIQPAGVSVEGNTDPTDDGKDLDMKLFIGGVVHNDEDTPSKDEYVRLPAEI 412

Query: 413 KDLEKDSFVLHVPAKSLDYDHTGESKMSKLKVAALAAQGVSELMPFDVAKAFWSSDKASS 472
           KD+E+DSF LH+P KSL+YD + E K SK+KVAA+AA+GVSELMP D+AKAFW +DK SS
Sbjct: 413 KDIERDSFALHIPEKSLEYD-SKERKASKIKVAAIAAKGVSELMPPDIAKAFWGADKVSS 471

Query: 473 KVSRDVREVLKLAVSQAQKQSRLSEYTTFSRINTSEGDLDPFDGLYVGAFGPYGTEVVQL 532
           KVSRDVRE++KLAVSQAQKQSRLS++T FSRINTS  + DPFDGLYVGAFGPYGTEVVQL
Sbjct: 472 KVSRDVREIVKLAVSQAQKQSRLSKHTNFSRINTSNNNFDPFDGLYVGAFGPYGTEVVQL 531

Query: 533 RRKYGQWSGEGEKSSDMEFFEYVEAVKLTGDLNVPAGEVTFRAKIGKGSRLPNRGKFPDE 592
           RRK+G W+   +KSSD+EFFEYVEAVKLTGDLNVPAG+VTFRAKIGKGSR PNRG +PDE
Sbjct: 532 RRKFGHWNVTDDKSSDVEFFEYVEAVKLTGDLNVPAGQVTFRAKIGKGSRNPNRGMYPDE 591

Query: 593 LGVVASYSGQGRIADFGFRNPKWVDGELLQLNGK 626
           LGVVASY GQGRIA+FGFRNP+WVDGELLQLNGK
Sbjct: 592 LGVVASYKGQGRIAEFGFRNPQWVDGELLQLNGK 625

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297733793|emb|CBI15040.3| unnamed protein product [Vitis vinifera]

 Score =  829 bits (2142), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 433/635 (68%), Positives = 517/635 (81%), Gaps = 21/635 (3%)

Query: 1   MIITNNGWGITP-ATQTQLRRRPPPPRFQCLD--LSVKKSSTPTSSLSFV--LGCYSFPS 55
           M +TN  WG+   A+ TQ R     P   C D  LS K+SS       F   LGC  +  
Sbjct: 1   MALTN-AWGMGHIASMTQFR-----PSKSCSDALLSSKRSSNLKLGFFFGWGLGCSVYHK 54

Query: 56  SSKYKKVKHPLPQPLCCLCSDNTHSTNTNNTISSSSLDWDWNRWTRHFSEIEQAESYASL 115
            + ++  K P    LCC CS+N   T  NN  SSSS  WDWN+W+RHFSEIEQAES+AS+
Sbjct: 55  PADFRPRKSP---NLCCRCSNNP--TIANNGNSSSSSGWDWNQWSRHFSEIEQAESFASV 109

Query: 116 LKFQLEDAIEREDFEEAANLKNAIAEAASKDTVAEIMAQLKNAIDEERYHDASRLCRYTG 175
           LKFQLEDAIEREDFEEAA LK AIAEA S D+V EIM+QLKNAIDEERYHDAS+LCR+T 
Sbjct: 110 LKFQLEDAIEREDFEEAAKLKMAIAEAMSMDSVTEIMSQLKNAIDEERYHDASKLCRHTA 169

Query: 176 SGLVGWWVGYSKDSDDPFGRLIQIKPGVGRFVARNYSPRQLVTASPGTPLFEIFVVKDNE 235
           SGLVGWWVG S DSDDPFGRL+ I PGVGRFV R+YSPRQLVTAS GTPLFEIFVVKD++
Sbjct: 170 SGLVGWWVGCSADSDDPFGRLVHITPGVGRFVGRSYSPRQLVTASAGTPLFEIFVVKDSD 229

Query: 236 ESYVMQVVHLKQAKGTSTNSTSSPSKSTKSPSTSEVENASVVDVQGTKVKEERSDEKGIN 295
           E Y+MQVV+L++AKG++ N TS  S+ TK  S+SE E ASVVD+QG + K E+ +EKGI+
Sbjct: 230 EKYIMQVVYLQRAKGSTANPTSLTSRPTKGSSSSETETASVVDIQGNEGKTEKREEKGIS 289

Query: 296 IEGVTEEGIKSVINFLKEKIPGLKVKVMNIDITAEVTDDADSLKQLIQ-DGEEAESS-DS 353
           IEG TEEGIKSVINFLK+KIP LKVKVM I++  EV +D DS+KQ +Q D E+ +SS DS
Sbjct: 290 IEGATEEGIKSVINFLKDKIPELKVKVMKINVPDEVIEDGDSVKQFMQEDDEKTQSSEDS 349

Query: 354 EGEADDIEEIQPDEVALEGANEASEDEKELDTKVFIGGVVHNNEDAPTKDEYVRMPADVK 413
           E EADD+++IQPDEVAL G +  +ED + LD K+FIGGV+HN ED  +KD+YVR PA+++
Sbjct: 350 EDEADDLDKIQPDEVALGGGSNTAEDGQNLDMKLFIGGVLHNKEDTSSKDDYVRQPAEIR 409

Query: 414 DLEKDSFVLHVPAKSLDYDHTGESKMSKLKVAALAAQGVSELMPFDVAKAFWSSDKASSK 473
           D+E+DSFVLHVP +S D+D  GE+K+SK+KVAA+AAQG+SELMP +VAKAFWS+DK S K
Sbjct: 410 DMERDSFVLHVPVRSQDHD-IGENKVSKVKVAAIAAQGISELMPSEVAKAFWSADKVSPK 468

Query: 474 VSRDVREVLKLAVSQAQKQSRLSEYTTFSRINTSEGDLDPFDGLYVGAFGPYGTEVVQLR 533
           VSRDVRE++KLAVSQAQK++RLSE+T+FSRI TS+G LDPFDGLYVGAFGPYGTEVVQLR
Sbjct: 469 VSRDVREIVKLAVSQAQKRNRLSEHTSFSRITTSKGSLDPFDGLYVGAFGPYGTEVVQLR 528

Query: 534 RKYGQWSG--EGEKSSDMEFFEYVEAVKLTGDLNVPAGEVTFRAKIGKGSRLPNRGKFPD 591
            K+G W+G  + +KSSD+EFFEYVEAVKLTGDLNVPAG+VTFRAKIGKGSR+PNRG +PD
Sbjct: 529 CKFGNWNGGDDNDKSSDVEFFEYVEAVKLTGDLNVPAGQVTFRAKIGKGSRIPNRGMYPD 588

Query: 592 ELGVVASYSGQGRIADFGFRNPKWVDGELLQLNGK 626
           ELGVVASYSGQGRIA+FGFRNP+WVDGELLQL+GK
Sbjct: 589 ELGVVASYSGQGRIAEFGFRNPQWVDGELLQLSGK 623

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359491590|ref|XP_002279734.2| PREDICTED: protein EXECUTER 1, chloroplastic [Vitis vinifera]

 Score =  825 bits (2130), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 428/622 (68%), Positives = 510/622 (81%), Gaps = 19/622 (3%)

Query: 13  ATQTQLRRRPPPPRFQCLD--LSVKKSSTPTSSLSFV--LGCYSFPSSSKYKKVKHPLPQ 68
           A+ TQ R     P   C D  LS K+SS       F   LGC  +   + ++  K P   
Sbjct: 5   ASMTQFR-----PSKSCSDALLSSKRSSNLKLGFFFGWGLGCSVYHKPADFRPRKSP--- 56

Query: 69  PLCCLCSDNTHSTNTNNTISSSSLDWDWNRWTRHFSEIEQAESYASLLKFQLEDAIERED 128
            LCC CS+N   T  NN  SSSS  WDWN+W+RHFSEIEQAES+AS+LKFQLEDAIERED
Sbjct: 57  NLCCRCSNNP--TIANNGNSSSSSGWDWNQWSRHFSEIEQAESFASVLKFQLEDAIERED 114

Query: 129 FEEAANLKNAIAEAASKDTVAEIMAQLKNAIDEERYHDASRLCRYTGSGLVGWWVGYSKD 188
           FEEAA LK AIAEA S D+V EIM+QLKNAIDEERYHDAS+LCR+T SGLVGWWVG S D
Sbjct: 115 FEEAAKLKMAIAEAMSMDSVTEIMSQLKNAIDEERYHDASKLCRHTASGLVGWWVGCSAD 174

Query: 189 SDDPFGRLIQIKPGVGRFVARNYSPRQLVTASPGTPLFEIFVVKDNEESYVMQVVHLKQA 248
           SDDPFGRL+ I PGVGRFV R+YSPRQLVTAS GTPLFEIFVVKD++E Y+MQVV+L++A
Sbjct: 175 SDDPFGRLVHITPGVGRFVGRSYSPRQLVTASAGTPLFEIFVVKDSDEKYIMQVVYLQRA 234

Query: 249 KGTSTNSTSSPSKSTKSPSTSEVENASVVDVQGTKVKEERSDEKGINIEGVTEEGIKSVI 308
           KG++ N TS  S+ TK  S+SE E ASVVD+QG + K E+ +EKGI+IEG TEEGIKSVI
Sbjct: 235 KGSTANPTSLTSRPTKGSSSSETETASVVDIQGNEGKTEKREEKGISIEGATEEGIKSVI 294

Query: 309 NFLKEKIPGLKVKVMNIDITAEVTDDADSLKQLIQ-DGEEAESS-DSEGEADDIEEIQPD 366
           NFLK+KIP LKVKVM I++  EV +D DS+KQ +Q D E+ +SS DSE EADD+++IQPD
Sbjct: 295 NFLKDKIPELKVKVMKINVPDEVIEDGDSVKQFMQEDDEKTQSSEDSEDEADDLDKIQPD 354

Query: 367 EVALEGANEASEDEKELDTKVFIGGVVHNNEDAPTKDEYVRMPADVKDLEKDSFVLHVPA 426
           EVAL G +  +ED + LD K+FIGGV+HN ED  +KD+YVR PA+++D+E+DSFVLHVP 
Sbjct: 355 EVALGGGSNTAEDGQNLDMKLFIGGVLHNKEDTSSKDDYVRQPAEIRDMERDSFVLHVPV 414

Query: 427 KSLDYDHTGESKMSKLKVAALAAQGVSELMPFDVAKAFWSSDKASSKVSRDVREVLKLAV 486
           +S D+D  GE+K+SK+KVAA+AAQG+SELMP +VAKAFWS+DK S KVSRDVRE++KLAV
Sbjct: 415 RSQDHD-IGENKVSKVKVAAIAAQGISELMPSEVAKAFWSADKVSPKVSRDVREIVKLAV 473

Query: 487 SQAQKQSRLSEYTTFSRINTSEGDLDPFDGLYVGAFGPYGTEVVQLRRKYGQWSG--EGE 544
           SQAQK++RLSE+T+FSRI TS+G LDPFDGLYVGAFGPYGTEVVQLR K+G W+G  + +
Sbjct: 474 SQAQKRNRLSEHTSFSRITTSKGSLDPFDGLYVGAFGPYGTEVVQLRCKFGNWNGGDDND 533

Query: 545 KSSDMEFFEYVEAVKLTGDLNVPAGEVTFRAKIGKGSRLPNRGKFPDELGVVASYSGQGR 604
           KSSD+EFFEYVEAVKLTGDLNVPAG+VTFRAKIGKGSR+PNRG +PDELGVVASYSGQGR
Sbjct: 534 KSSDVEFFEYVEAVKLTGDLNVPAGQVTFRAKIGKGSRIPNRGMYPDELGVVASYSGQGR 593

Query: 605 IADFGFRNPKWVDGELLQLNGK 626
           IA+FGFRNP+WVDGELLQL+GK
Sbjct: 594 IAEFGFRNPQWVDGELLQLSGK 615

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449518939|ref|XP_004166493.1| PREDICTED: protein EXECUTER 1, chloroplastic-like [Cucumis sativus]

 Score =  762 bits (1967), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 396/612 (64%), Positives = 492/612 (80%), Gaps = 15/612 (2%)

Query: 27  FQCLDLSVKKSSTPTSSLSFVLGCYSFPSSSKYKKV--KHPLPQPLCCLCSDN------T 78
           F   DLS KKS+   S L    GC +  ++ K   +  +HP    L C CS N       
Sbjct: 16  FSSFDLSPKKSND--SRLIMSWGCATHINNPKLSVISTRHPRNSALFCRCSANGGTSESN 73

Query: 79  HSTNTNNTISSSSLDWDWNRWTRHFSEIEQAESYASLLKFQLEDAIEREDFEEAANLKNA 138
            + +++++ SSSSL+WDW RW R+FSEIEQAE++AS+LKFQLE+A+E+EDFEEAA LK  
Sbjct: 74  SNLSSSSSSSSSSLEWDWVRWNRYFSEIEQAENFASVLKFQLEEAVEKEDFEEAAKLKLV 133

Query: 139 IAEAASKDTVAEIMAQLKNAIDEERYHDASRLCRYTGSGLVGWWVGYSKDSDDPFGRLIQ 198
           IAE A KD+V EIM QLK+AI+EERY DAS LC+ TGSGLVGWWVGYS+DSDDPFGRLI+
Sbjct: 134 IAETARKDSVTEIMHQLKSAIEEERYQDASMLCKCTGSGLVGWWVGYSQDSDDPFGRLIR 193

Query: 199 IKPGVGRFVARNYSPRQLVTASPGTPLFEIFVVKDNEESYVMQVVHLKQAKGTSTNSTSS 258
           I PGVGRF+ R YSPRQLVTASPGTPLFEIF+VKD+EE YVMQVV+++++KG S  STSS
Sbjct: 194 ITPGVGRFIGRGYSPRQLVTASPGTPLFEIFIVKDDEERYVMQVVYMQRSKGNSKISTSS 253

Query: 259 PSKSTKSPSTSEVENASVVDVQGTKVKEERSDEKGINIEGVTEEGIKSVINFLKEKIPGL 318
           PS+ + SPSTS V+N + VD+    V +E S+EKG+ +E  TEEGIK VINFLK+KIPGL
Sbjct: 254 PSEPSNSPSTSGVKNQTAVDIPENVVTKEESEEKGVTMEEATEEGIKGVINFLKDKIPGL 313

Query: 319 KVKVMNIDITAEVTDDADSLKQLIQDGEE--AESSDSEGEADDIEEIQPDEVALEGANEA 376
           KVKVMN ++  EV DDA+S+KQL+Q+  E    S +S+ E D ++EIQP+ V+L   ++A
Sbjct: 314 KVKVMNTNVPEEVIDDANSVKQLMQEDSEKTGTSGNSDDEMDRLDEIQPEAVSLGENSDA 373

Query: 377 SEDEKELDTKVFIGGVVHNNEDAPTKDEYVRMPADVKDLEKDSFVLHVPAKSLDYDHTGE 436
           S+DEK+LD K++IGGVVHN+E+ PTKDE+VR PA ++++++DSFVLH+P +SLD D   E
Sbjct: 374 SDDEKDLDVKLYIGGVVHNSEETPTKDEFVRHPAFIQNMDRDSFVLHIPERSLDLD-AAE 432

Query: 437 SKMSKLKVAALAAQGVSELMPFDVAKAFWSSDKASSKVSRDVREVLKLAVSQAQKQSRLS 496
           +K+SK+KVAALAAQGVSELMP DVAK FW  DK S K+SR+VRE++K AVSQAQK+S+LS
Sbjct: 433 NKVSKVKVAALAAQGVSELMPADVAKVFWGVDKVSPKISRNVREIVKRAVSQAQKRSKLS 492

Query: 497 EYTTFSRINTSEGDLDPFDGLYVGAFGPYGTEVVQLRRKYGQWSGEGEK--SSDMEFFEY 554
           EYTTF+RI T+ GDLDPFDGLYVGAFGPYGTEVVQLRRK+G W+    K  +SD+EFFEY
Sbjct: 493 EYTTFNRITTASGDLDPFDGLYVGAFGPYGTEVVQLRRKFGHWNDLDNKDDTSDIEFFEY 552

Query: 555 VEAVKLTGDLNVPAGEVTFRAKIGKGSRLPNRGKFPDELGVVASYSGQGRIADFGFRNPK 614
           VEAVKLTGDLN+PAG+VTFRAKIG+G R  NRG +PDELGVVASY GQGRIA+FGFRNP+
Sbjct: 553 VEAVKLTGDLNLPAGQVTFRAKIGRGIRNANRGIYPDELGVVASYKGQGRIAEFGFRNPQ 612

Query: 615 WVDGELLQLNGK 626
           W+DGELLQLNG+
Sbjct: 613 WIDGELLQLNGR 624

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357462003|ref|XP_003601283.1| Protein EXECUTER [Medicago truncatula] gi|355490331|gb|AES71534.1| Protein EXECUTER [Medicago truncatula]

 Score =  760 bits (1962), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 385/601 (64%), Positives = 475/601 (79%), Gaps = 29/601 (4%)

Query: 37  SSTPTSSLSFVLG-----CYSF---PSSSKYKKVKHPLPQPLCCLCSDNTHSTNTNNTIS 88
           S+T T+S  F L       +SF   PS S + + ++  P  L C           N+T  
Sbjct: 15  SNTTTTSSRFNLHPNKPPTFSFQNNPSISIFSR-RNRTPHFLRC---------TPNSTND 64

Query: 89  SSSLDWDWNRWTRHFSEIEQAESYASLLKFQLEDAIEREDFEEAANLKNAIAEAASKDTV 148
           +SSL+WDWNRW RHF +IEQAES+ASLLKFQLEDAIE+E+F+EAA LK AI EA SKD+V
Sbjct: 65  ASSLNWDWNRWCRHFDDIEQAESFASLLKFQLEDAIEKEEFQEAAKLKRAIVEATSKDSV 124

Query: 149 AEIMAQLKNAIDEERYHDASRLCRYTGSGLVGWWVGYSKDSDDPFGRLIQIKPGVGRFVA 208
           AEIM+QLKNAID+ERYHDAS+LCRYTGSGLVGWWVGYSK+S+DPFGR+I+I PG+GRFV 
Sbjct: 125 AEIMSQLKNAIDDERYHDASKLCRYTGSGLVGWWVGYSKNSEDPFGRIIRISPGMGRFVG 184

Query: 209 RNYSPRQLVTASPGTPLFEIFVVKDNEESYVMQVVHLKQAKGTSTNSTSSPSKSTKSPST 268
           ++YSPRQL+TAS GTPLFEI+VVK+ +++Y MQVV+L++AKG ST S   PS   K PS 
Sbjct: 185 KSYSPRQLLTASTGTPLFEIYVVKNADDTYHMQVVYLRRAKGNST-SNLPPSLLAKRPSK 243

Query: 269 SEVENASVVDVQGTKVK-EERSDEKGINIEGVTEEGIKSVINFLKEKIPGLKVKVMNIDI 327
            EVEN S  +VQ  + K EER+DEK  N+E  TE+GIKSVINFLKEKIPGLKVKVMNI++
Sbjct: 244 PEVENLSSAEVQEPEDKVEERNDEKNSNVEAATEDGIKSVINFLKEKIPGLKVKVMNINV 303

Query: 328 TAEVTDDADSLKQLIQDGEEAESSDSEGEADDIEEIQPDEVALEGANEASEDEKELDTKV 387
             E  +  DS+KQ++    E + + ++GE D+++E  PDEV LE   +AS++EK+LD K+
Sbjct: 304 EEEAREGNDSIKQIM----EEDGNKTDGEDDNLDE--PDEVTLESDGDASDEEKDLDMKL 357

Query: 388 FIGGVVHNNEDAPTKDEYVRMPADVKDLEKDSFVLHVPAKSLDYDHTGESKMSKLKVAAL 447
           FIGG+VHNNED  +KDE++R+PA++K++E++SF+LH+P ++LD D   E K+  +KVAAL
Sbjct: 358 FIGGIVHNNEDNSSKDEFIRLPAEIKNMERESFLLHIPRRNLDNDRK-EDKVRNIKVAAL 416

Query: 448 AAQGVSELMPFDVAKAFWSSDKASSKVSRDVREVLKLAVSQAQKQSRLSEYTTFSRINTS 507
           AAQG+SELMP DVAKAFW SDK SSKVS+ +RE++KLA+SQAQK+SRLSE T FSRI   
Sbjct: 417 AAQGISELMPSDVAKAFWGSDKVSSKVSKSMREIVKLAISQAQKKSRLSEDTYFSRIACP 476

Query: 508 EGDLDPFDGLYVGAFGPYGTEVVQLRRKYGQWS--GEGEKSSDMEFFEYVEAVKLTGDLN 565
            GD DPFDGLYVGAFGPYG E+VQLRRK+G W+       +SD+EFFEYVEAVKLTGDLN
Sbjct: 477 RGDFDPFDGLYVGAFGPYGIEIVQLRRKFGHWNDVDSENNTSDIEFFEYVEAVKLTGDLN 536

Query: 566 VPAGEVTFRAKIGKGSRLPNRGKFPDELGVVASYSGQGRIADFGFRNPKWVDGELLQLNG 625
           VPAG+VTFRAKIGK +R  NRG +PDELGV ASY GQGRIADFGFRNPKWVDGELLQLNG
Sbjct: 537 VPAGQVTFRAKIGKVNRNANRGLYPDELGVNASYKGQGRIADFGFRNPKWVDGELLQLNG 596

Query: 626 K 626
           K
Sbjct: 597 K 597

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449441021|ref|XP_004138282.1| PREDICTED: protein EXECUTER 1, chloroplastic-like [Cucumis sativus]

 Score =  741 bits (1913), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 378/569 (66%), Positives = 466/569 (81%), Gaps = 8/569 (1%)

Query: 65  PLPQ--PLCCL-CSDNTHSTNTNNTISSSSLDWDWNRWTRHFSEIEQAESYASLLKFQLE 121
           P+ Q  P C    S    +  T+ + S+ S    W RW R+FSEIEQAE++AS+LKFQLE
Sbjct: 9   PMLQFTPFCSFDLSPKIANGGTSESNSNLSSSSSWVRWNRYFSEIEQAENFASVLKFQLE 68

Query: 122 DAIEREDFEEAANLKNAIAEAASKDTVAEIMAQLKNAIDEERYHDASRLCRYTGSGLVGW 181
           +A+E+EDFEEAA LK  IAE A KD+V EIM QLK+AI+EERY DAS LC+ TGSGLVGW
Sbjct: 69  EAVEKEDFEEAAKLKLVIAETARKDSVTEIMHQLKSAIEEERYQDASMLCKCTGSGLVGW 128

Query: 182 WVGYSKDSDDPFGRLIQIKPGVGRFVARNYSPRQLVTASPGTPLFEIFVVKDNEESYVMQ 241
           WVGYS+DSDDPFGRLI+I PGVGRF+ R YSPRQLVTASPGTPLFEIF+VKD+EE YVMQ
Sbjct: 129 WVGYSQDSDDPFGRLIRITPGVGRFIGRGYSPRQLVTASPGTPLFEIFIVKDDEERYVMQ 188

Query: 242 VVHLKQAKGTSTNSTSSPSKSTKSPSTSEVENASVVDVQGTKVKEERSDEKGINIEGVTE 301
           VV+++++KG S  STSSPS+ + SPSTS V+N + VD+    V +E S+EKG+ +E  TE
Sbjct: 189 VVYMQRSKGNSKISTSSPSEPSNSPSTSGVKNQTAVDIPENVVTKEESEEKGVTMEEATE 248

Query: 302 EGIKSVINFLKEKIPGLKVKVMNIDITAEVTDDADSLKQLIQDGEE--AESSDSEGEADD 359
           EGIK VINFLK+KIPGLKVKVMN ++  EV DDA+S+KQL+Q+  E    S +S+ E D 
Sbjct: 249 EGIKGVINFLKDKIPGLKVKVMNTNVPEEVIDDANSVKQLMQEDSEKTGTSGNSDDEMDR 308

Query: 360 IEEIQPDEVALEGANEASEDEKELDTKVFIGGVVHNNEDAPTKDEYVRMPADVKDLEKDS 419
           ++EIQP+ V+L   ++AS+DEK+LD K++IGGVVHN+E+ PTKDE+VR PA ++++++DS
Sbjct: 309 LDEIQPEAVSLGENSDASDDEKDLDVKLYIGGVVHNSEETPTKDEFVRHPAFIQNMDRDS 368

Query: 420 FVLHVPAKSLDYDHTGESKMSKLKVAALAAQGVSELMPFDVAKAFWSSDKASSKVSRDVR 479
           FVLH+P +SLD D   E+K+SK+KVAALAAQGVSELMP DVAK FW  DK S K+SR+VR
Sbjct: 369 FVLHIPERSLDLD-AAENKVSKVKVAALAAQGVSELMPADVAKVFWGVDKVSPKISRNVR 427

Query: 480 EVLKLAVSQAQKQSRLSEYTTFSRINTSEGDLDPFDGLYVGAFGPYGTEVVQLRRKYGQW 539
           E++K AVSQAQK+S+LSEYTTF+RI T+ GDLDPFDGLYVGAFGPYGTEVVQLRRK+G W
Sbjct: 428 EIVKRAVSQAQKRSKLSEYTTFNRITTASGDLDPFDGLYVGAFGPYGTEVVQLRRKFGHW 487

Query: 540 SGEGEK--SSDMEFFEYVEAVKLTGDLNVPAGEVTFRAKIGKGSRLPNRGKFPDELGVVA 597
           +    K  +SD+EFFEYVEAVKLTGDLN+PAG+VTFRAKIG+G R  NRG +PDELGVVA
Sbjct: 488 NDLDNKDDTSDIEFFEYVEAVKLTGDLNLPAGQVTFRAKIGRGIRNANRGIYPDELGVVA 547

Query: 598 SYSGQGRIADFGFRNPKWVDGELLQLNGK 626
           SY GQGRIA+FGFRNP+W+DGELLQLNG+
Sbjct: 548 SYKGQGRIAEFGFRNPQWIDGELLQLNGR 576

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356518979|ref|XP_003528152.1| PREDICTED: protein EXECUTER 1, chloroplastic-like [Glycine max]

 Score =  734 bits (1896), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 365/608 (60%), Positives = 464/608 (76%), Gaps = 20/608 (3%)

Query: 28  QCLDLSVKKSSTPTSSLSFVLGCYSFPSSSKYKKVKHPLPQPLCCLCS----DNTHSTNT 83
           Q + +++  ++T T S      C+ F +           PQP   + +    +NTH    
Sbjct: 5   QAISIAISTTATRTPSC-----CFHFNTKKPSLLGLAHSPQPNLSISAPRNRNNTHCCRC 59

Query: 84  NNTISSSSLDWDWNRWTRHFSEIEQAESYASLLKFQLEDAIEREDFEEAANLKNAIAEAA 143
                 +SL WDWNRW RHFS+IEQAE++AS+LKFQL+DAIE+EDFEEA  LK A+ EA 
Sbjct: 60  TLNSDHTSLTWDWNRWCRHFSQIEQAENFASVLKFQLDDAIEKEDFEEAVKLKRALVEAT 119

Query: 144 SKDTVAEIMAQLKNAIDEERYHDASRLCRYTGSGLVGWWVGYSKDSDDPFGRLIQIKPGV 203
           SKDTVAE+M QLK+AID+ERYHDASRLC+ TGSGLVGWWVGY K SDDPFGR+I I PG+
Sbjct: 120 SKDTVAEVMDQLKSAIDDERYHDASRLCKCTGSGLVGWWVGYPKASDDPFGRIIHISPGM 179

Query: 204 GRFVARNYSPRQLVTASPGTPLFEIFVVKDNEESYVMQVVHLKQAKGTS-TNSTSSPSKS 262
           GRF+ ++YSPRQL+ AS GTP+FEI+VVK+ +++Y MQVV+L+QAKG S  N  S P+  
Sbjct: 180 GRFIGKSYSPRQLMRASTGTPIFEIYVVKNADDTYHMQVVYLRQAKGKSRRNPQSVPA-- 237

Query: 263 TKSPSTSEVENASVVDVQGTKVKEERSDEKGINIEGVTEEGIKSVINFLKEKIPGLKVKV 322
            K PS  EVENAS V+VQ  + K ER+DEK  NIEGVTEEGIKSVINFLKEKIPGLK+KV
Sbjct: 238 -KGPSKPEVENASAVEVQEPEEKIERNDEKNTNIEGVTEEGIKSVINFLKEKIPGLKIKV 296

Query: 323 MNIDITAEVTDDADSLKQLIQD--GEEAESSDSEGEADDIEEIQPDEVALEGANEASEDE 380
           MN+ +  E  ++ DS+KQL+++   +   S + E E ++++E  PD V LE   +A+E+E
Sbjct: 297 MNVSVEEEAAENNDSIKQLMEEDSNKTGSSENHEEEVNNLDE--PDAVTLERDGDATEEE 354

Query: 381 KELDTKVFIGGVVHNNEDAPTKDEYVRMPADVKDLEKDSFVLHVPAKSLDYDHTGESKMS 440
           K+L+ K+ IGGVVHNNED P KDE++R+PA++K++EKDSFV H    ++DY    E K+ 
Sbjct: 355 KDLEMKLLIGGVVHNNEDTPVKDEFIRLPAEIKNMEKDSFVFHFDCGNVDYG-IKEDKIP 413

Query: 441 KLKVAALAAQGVSELMPFDVAKAFWSSDKASSKVSRDVREVLKLAVSQAQKQSRLSEYTT 500
            +KVAALAAQGVSELMP DVA AFWSSDK SSK+S+ +R+++++A+SQAQK+++LS  T 
Sbjct: 414 NIKVAALAAQGVSELMPPDVANAFWSSDKVSSKISKSMRDIVRVAMSQAQKRTKLSGDTN 473

Query: 501 FSRINTSEGDLDPFDGLYVGAFGPYGTEVVQLRRKYGQWS--GEGEKSSDMEFFEYVEAV 558
           FSRI  S GD DPFDGLYVGAFGPYG E+V LRRK+G W+      K+SD+ FFEYVEAV
Sbjct: 474 FSRIICSRGDSDPFDGLYVGAFGPYGMEIVHLRRKFGHWNEVDNENKTSDVGFFEYVEAV 533

Query: 559 KLTGDLNVPAGEVTFRAKIGKGSRLPNRGKFPDELGVVASYSGQGRIADFGFRNPKWVDG 618
           KLTGDLNVPAG VTFRAKIG+G+R+ N+G +PD+LGVVASY GQGRIAD+G+RNPKWV+G
Sbjct: 534 KLTGDLNVPAGLVTFRAKIGRGNRITNQGMYPDDLGVVASYKGQGRIADYGYRNPKWVEG 593

Query: 619 ELLQLNGK 626
           ELLQLNGK
Sbjct: 594 ELLQLNGK 601

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356507232|ref|XP_003522373.1| PREDICTED: protein EXECUTER 1, chloroplastic-like [Glycine max]

 Score =  720 bits (1859), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 375/628 (59%), Positives = 470/628 (74%), Gaps = 43/628 (6%)

Query: 9   GITPATQTQLRRRPPPPRFQCLDLSVKKSSTPTSSLSFVLGCYSFPS-----SSKYKKVK 63
           G++ A  +    R P     C+D   KK         F+LG    P      S++  +  
Sbjct: 5   GVSQAISSTTATRTP----SCIDFHSKKP--------FLLGLAHSPQPNLSISARRSRNT 52

Query: 64  HPLPQPLCCLCSDNTHSTNTNNTISSSSLDWDWNRWTRHFSEIEQAESYASLLKFQLEDA 123
           H      CC C+ N+  T         SL WDWNRW RHFS+IEQAE++AS+LKFQL+DA
Sbjct: 53  H------CCRCTLNSDDT---------SLSWDWNRWCRHFSDIEQAENFASVLKFQLDDA 97

Query: 124 IEREDFEEAANLKNAIAEAASKDTVAEIMAQLKNAIDEERYHDASRLCRYTGSGLVGWWV 183
           IE+EDFEEA  L  A++EA SKDTVAEIM QLK+AID+ERYHDASRLC+ TGSGLVGWWV
Sbjct: 98  IEKEDFEEAVKLNRALSEATSKDTVAEIMDQLKSAIDDERYHDASRLCKCTGSGLVGWWV 157

Query: 184 GYSKDSDDPFGRLIQIKPGVGRFVARNYSPRQLVTASPGTPLFEIFVVKDNEESYVMQVV 243
           GYSK SDDPFGR+I I PG+GRF+ ++YSPRQL+ AS GTP+FEI+VVK+ +++Y MQVV
Sbjct: 158 GYSKASDDPFGRIIHISPGMGRFIGKSYSPRQLMRASTGTPIFEIYVVKNADDTYHMQVV 217

Query: 244 HLKQAKGTS-TNSTSSPSKSTKSPSTSEVENASVVDVQGTKVKEERSDEKGINIEGVTEE 302
           +L+QAKG S  N  S P+   K PS  EVENAS V+VQ  + K ER+DEK  NIEGVTEE
Sbjct: 218 YLRQAKGKSRRNPQSIPA---KGPSKPEVENASSVEVQEPEEKIERNDEKNSNIEGVTEE 274

Query: 303 GIKSVINFLKEKIPGLKVKVMNIDITAEVTDDADSLKQLIQD--GEEAESSDSEGEADDI 360
           GIKSVINFLKEKIPGLKVKVMN+++  E  ++ DS+KQL+++   E   S + E E +++
Sbjct: 275 GIKSVINFLKEKIPGLKVKVMNVNVEEEAAENNDSIKQLMEEDSNESGSSENHEEEVNNL 334

Query: 361 EEIQPDEVALEGANEASEDEKELDTKVFIGGVVHNNEDAPTKDEYVRMPADVKDLEKDSF 420
           +E  PD V LE   + +E+EK+ + K+FIGGVVHNNED P KDE++R+PA++K++EKDSF
Sbjct: 335 DE--PDAVTLERDGDVTEEEKDFEMKLFIGGVVHNNEDTPVKDEFIRLPAEIKNIEKDSF 392

Query: 421 VLHVPAKSLDYDHTGESKMSKLKVAALAAQGVSELMPFDVAKAFWSSDKASSKVSRDVRE 480
           V H  + ++DY    E K+  +KVAALAAQG+SELMP DVA AFWSSDK SSKVS+ +R+
Sbjct: 393 VFHFASGNVDYG-IKEDKIPNIKVAALAAQGISELMPPDVANAFWSSDKVSSKVSKSMRD 451

Query: 481 VLKLAVSQAQKQSRLSEYTTFSRINTSEGDLDPFDGLYVGAFGPYGTEVVQLRRKYGQWS 540
           ++++A+SQAQK++RLS  T FSRI  S GD DPFDGLYVGAFGPYG E+V LRRK+G W+
Sbjct: 452 IVRVAMSQAQKRTRLSGDTNFSRIICSRGDSDPFDGLYVGAFGPYGMEIVHLRRKFGHWN 511

Query: 541 --GEGEKSSDMEFFEYVEAVKLTGDLNVPAGEVTFRAKIGKGSRLPNRGKFPDELGVVAS 598
                  +SD+ FFEYVEAVKLTGDLNVPAG+VTFRAKIG+G+R  NRG +PD+LGVVAS
Sbjct: 512 EVNNENNTSDVGFFEYVEAVKLTGDLNVPAGQVTFRAKIGRGNRNTNRGMYPDDLGVVAS 571

Query: 599 YSGQGRIADFGFRNPKWVDGELLQLNGK 626
           Y GQGRIAD+G+RNPKWV+GELLQLNGK
Sbjct: 572 YKGQGRIADYGYRNPKWVEGELLQLNGK 599

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297851182|ref|XP_002893472.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297339314|gb|EFH69731.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score =  639 bits (1649), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 343/619 (55%), Positives = 453/619 (73%), Gaps = 27/619 (4%)

Query: 20  RRPPPPRFQCLDLSVKKSSTP------TSSLSFVLGC-YSFPSSSKYKKVKHPLPQPLCC 72
           +R   P+F  L  S K S  P       ++ S  +G  +SF S + +    +P    L C
Sbjct: 11  QRISVPQFHLL-FSPKNSPIPELSTNKRTNFSVSIGLRHSFASITTW----NPKKPSLSC 65

Query: 73  LCSDNTHSTNTNNTISSSSLDWDWNRWTRHFSEIEQAESYASLLKFQLEDAIEREDFEEA 132
           L   N  + +  +T SS    WDW+RW RHFSEIE+ E+  SLLK QLEDA+E+EDFEEA
Sbjct: 66  L--RNCPAVDGADT-SSCEDKWDWDRWNRHFSEIEEVETVVSLLKSQLEDAVEKEDFEEA 122

Query: 133 ANLKNAIAEAASKDTVAEIMAQLKNAIDEERYHDASRLCRYTGSGLVGWWVGYSKDSDDP 192
             LK AIAEA   D VAEIM QL+ AI EERYHDASRLC  TGSGLVGWWVGY +DS++P
Sbjct: 123 VKLKQAIAEATVDDAVAEIMRQLQTAISEERYHDASRLCNETGSGLVGWWVGYPRDSEEP 182

Query: 193 FGRLIQIKPGVGRFVARNYSPRQLVTASPGTPLFEIFVVKDNEESYVMQVVHLKQAKGTS 252
           FGR++ I PGVGRF+ ++YSPRQLV  + GTPLFEIFVVKD +  YVMQVV+L+  K   
Sbjct: 183 FGRIVHITPGVGRFIGKSYSPRQLVAEAAGTPLFEIFVVKDTDGGYVMQVVYLQHVKQNL 242

Query: 253 TNSTSSPSKSTKSPSTSEVENASVVDVQGTKVKEERSDEKGINIEGVTEEGIKSVINFLK 312
           + S +S  ++ +S +TS +++ S++DV+G+++K ++ ++  +N    TEEGIK+VI FLK
Sbjct: 243 SISENSYLRAQQSSNTS-IDDPSILDVRGSELKSDKKEDIQLNAGEPTEEGIKNVIKFLK 301

Query: 313 EKIPGLKVKVMNIDITAE---VTDDADSLKQLIQDGEEAESSDSEGEADDIEEIQPDEVA 369
           +KIPGLK+KVM++    E   V  DA + ++L+ +G E  +S  + E ++  +   +  +
Sbjct: 302 DKIPGLKLKVMDVIKIPEEEIVGSDA-ATEELVGEGIEETNSSDDEEEEEENDSIEEISS 360

Query: 370 LEGANEASEDEKELDTKVFIGGVVHNNEDAPTKDEYVRMPADVKDLEKDSFVLHVPAKS- 428
           ++ A+      K L+TK+ IGGV+HN ED+   DE  R+ AD+ D E+DSF+LHVP +S 
Sbjct: 361 MDSADYG----KHLNTKLVIGGVLHNIEDSSIDDEIDRVSADIMDAERDSFILHVPGRSK 416

Query: 429 LDYDHTGESKMSKLKVAALAAQGVSELMPFDVAKAFWSSDKASSKVSRDVREVLKLAVSQ 488
           +D D T ++ +SK +V ALAAQG+S+LMP +VAKAFW S+KAS KVSR+VRE++KLA++Q
Sbjct: 417 IDID-TRKNGVSKEQVTALAAQGISDLMPPEVAKAFWGSEKASLKVSRNVREIVKLAINQ 475

Query: 489 AQKQSRLSEYTTFSRINTSEGDLDPFDGLYVGAFGPYGTEVVQLRRKYGQWS-GEGEKSS 547
           AQK +RLSEYT+F+RI T E +LDPFDGLYVGAFGPYGTE+VQL+RKYG+W+  EG  SS
Sbjct: 476 AQKGNRLSEYTSFNRIITPESNLDPFDGLYVGAFGPYGTEIVQLKRKYGRWNDAEGSNSS 535

Query: 548 DMEFFEYVEAVKLTGDLNVPAGEVTFRAKIGKGSRLPNRGKFPDELGVVASYSGQGRIAD 607
           D+EFFEYVEAVKLTGD NVPAGEVTFRA+IG GSR+ N G FP+ELGV+ASY GQGRIAD
Sbjct: 536 DIEFFEYVEAVKLTGDPNVPAGEVTFRARIGNGSRMTNHGLFPEELGVLASYRGQGRIAD 595

Query: 608 FGFRNPKWVDGELLQLNGK 626
           FGF+NPKWV+G+LL+LNGK
Sbjct: 596 FGFKNPKWVEGKLLKLNGK 614

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18396370|ref|NP_564287.1| uncharacterized protein [Arabidopsis thaliana] gi|15027911|gb|AAK76486.1| unknown protein [Arabidopsis thaliana] gi|21281187|gb|AAM45133.1| unknown protein [Arabidopsis thaliana] gi|332192719|gb|AEE30840.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  589 bits (1518), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 326/612 (53%), Positives = 440/612 (71%), Gaps = 19/612 (3%)

Query: 25  PRFQCL-----DLSVKKSSTPTSSLSFVLGC-YSFPSSSKYKKVKHPLPQPLCCLCSDNT 78
           P+F  L      L  + S+   ++ S  +G  +SF SS      K P    L CL   N 
Sbjct: 16  PQFHILFSPRNSLKPELSTNKRTNFSVSIGLRHSFASSISTCNPKAP---SLSCL--RNC 70

Query: 79  HSTNTNNTISS-SSLDWDWNRWTRHFSEIEQAESYASLLKFQLEDAIEREDFEEAANLKN 137
            + +  +T SS    DWDW+RW RHFSEIE+ ES  SLLK QLEDA+E+EDFEEA  LK 
Sbjct: 71  AAVDGADTSSSEDKWDWDWDRWNRHFSEIEEVESVVSLLKSQLEDAVEKEDFEEAVKLKQ 130

Query: 138 AIAEAASKDTVAEIMAQLKNAIDEERYHDASRLCRYTGSGLVGWWVGYSKDSDDPFGRLI 197
           AI+EA   D VAEIM QL+ A++EERYHDASRLC  TGSGLVGWWVG  +DS++PFGR++
Sbjct: 131 AISEATVDDAVAEIMRQLQTAVNEERYHDASRLCNETGSGLVGWWVGLPRDSEEPFGRIV 190

Query: 198 QIKPGVGRFVARNYSPRQLVTASPGTPLFEIFVVKDNEESYVMQVVHLKQAKGTSTNSTS 257
            I PGVGRF+ ++YSPRQLV  + GTPLFEIFV+KD +  YVMQVV+++  K   T S +
Sbjct: 191 HITPGVGRFIGKSYSPRQLVAEAAGTPLFEIFVIKDTDGGYVMQVVYVQHVKQNLTISEN 250

Query: 258 SPSKSTKSPSTSEVENASVVDVQGTKVKEERSDEKGINIEGVTEEGIKSVINFLKEKIPG 317
           S     +  S S + + S++DV+G+++K ++ ++  +N    TEEGIK+VI FLK+KIPG
Sbjct: 251 S-FSKVQQSSKSSINDPSILDVRGSELKVDKKEDTQLNAGEPTEEGIKNVIKFLKDKIPG 309

Query: 318 LKVKVMNIDITA--EVTDDADSLKQLIQDGEEAESSDSEGEADDIEEIQPDEVALEGANE 375
           LK+KVM++      E+    D+ ++L+  GE  E ++S  + +++EE + D +    + +
Sbjct: 310 LKLKVMDVIKIPEEEIVGSDDATEELV--GEGTEETNSSDDEEEVEEEENDSIEAISSMD 367

Query: 376 ASEDEKELDTKVFIGGVVHNNEDAPTKDEYVRMPADVKDLEKDSFVLHVPAKSLDYDHTG 435
           +++  K  +TK+ IGGV+HN ED+   DE VR+ A++ D E+DSF+LHVP +S     T 
Sbjct: 368 SADYGKHSNTKLVIGGVLHNIEDSSIDDEIVRVSANIMDTERDSFILHVPGRSKRDIDTR 427

Query: 436 ESKMSKLKVAALAAQGVSELMPFDVAKAFWSSDKASSKVSRDVREVLKLAVSQAQKQSRL 495
           ++++SK +V ALAAQG+S+L+P +VA+AFW  +KAS KVS+ V E++KLA++QAQK + L
Sbjct: 428 KNRVSKEQVTALAAQGLSDLLPPEVAEAFW-GEKASLKVSKHVHEIVKLAINQAQKGNHL 486

Query: 496 SEYTTFSRINTSEGDLDPFDGLYVGAFGPYGTEVVQLRRKYGQW-SGEGEKSSDMEFFEY 554
           SEYT F+RI T E +LDPFDGLYVGAFGPYGTE+VQL+RKYG+W   EG  SSD+EFFEY
Sbjct: 487 SEYTAFNRIITPESNLDPFDGLYVGAFGPYGTEIVQLKRKYGRWDDAEGSNSSDIEFFEY 546

Query: 555 VEAVKLTGDLNVPAGEVTFRAKIGKGSRLPNRGKFPDELGVVASYSGQGRIADFGFRNPK 614
           VEAVKLTGD NVPAG+VTFRA+IG GSR+ N G FP+ELGV+ASY GQG+IADFGF+ P+
Sbjct: 547 VEAVKLTGDPNVPAGQVTFRARIGNGSRMTNHGLFPEELGVLASYRGQGKIADFGFKKPR 606

Query: 615 WVDGELLQLNGK 626
           WV+G+LL+LNGK
Sbjct: 607 WVEGKLLKLNGK 618

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	628
TAIR|locus:2196889	651	EX2 "EXECUTER 2" [Arabidopsis	0.933	0.900	0.505	3.6e-153
TAIR|locus:2134168	684	EX1 "EXECUTER1" [Arabidopsis t	0.839	0.770	0.384	4.5e-91
ASPGD|ASPL0000031789	457	AN5209 [Emericella nidulans (t	0.202	0.277	0.284	0.00023

TAIR|locus:2196889 EX2 "EXECUTER 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 1494 (531.0 bits), Expect = 3.6e-153, P = 3.6e-153
 Identities = 303/600 (50%), Positives = 403/600 (67%)

Query:    32 LSVKKSSTPTSSLSFVLGC-YSFPSSSKYKKVKHPLPQPLCCLCXXXXXXXXXXXXXXXX 90
             L  + S+   ++ S  +G  +SF SS      K P    L CL                 
Sbjct:    28 LKPELSTNKRTNFSVSIGLRHSFASSISTCNPKAP---SLSCL-RNCAAVDGADTSSSED 83

Query:    91 XLDWDWNRWTRHFSEIEQAESYASLLKFQLEDAIEREDFXXXXXXXXXXXXXXSKDTVAE 150
               DWDW+RW RHFSEIE+ ES  SLLK QLEDA+E+EDF                D VAE
Sbjct:    84 KWDWDWDRWNRHFSEIEEVESVVSLLKSQLEDAVEKEDFEEAVKLKQAISEATVDDAVAE 143

Query:   151 IMAQLKNAIDEERYHDASRLCRYTGSGLVGWWVGYSKDSDDPFGRLIQIKPGVGRFVARN 210
             IM QL+ A++EERYHDASRLC  TGSGLVGWWVG  +DS++PFGR++ I PGVGRF+ ++
Sbjct:   144 IMRQLQTAVNEERYHDASRLCNETGSGLVGWWVGLPRDSEEPFGRIVHITPGVGRFIGKS 203

Query:   211 YSPRQLVTASPGTPLFEIFVVKDNEESYVMQVVHLKQAKGXXXXXXXXXXXXXXXXXXXE 270
             YSPRQLV  + GTPLFEIFV+KD +  YVMQVV+++  K                     
Sbjct:   204 YSPRQLVAEAAGTPLFEIFVIKDTDGGYVMQVVYVQHVK-QNLTISENSFSKVQQSSKSS 262

Query:   271 VENASVVDVQGTKVKEERSDEKGINIEGVTEEGIKSVINFLKEKIPGLKVKVMN-IDITA 329
             + + S++DV+G+++K ++ ++  +N    TEEGIK+VI FLK+KIPGLK+KVM+ I I  
Sbjct:   263 INDPSILDVRGSELKVDKKEDTQLNAGEPTEEGIKNVIKFLKDKIPGLKLKVMDVIKIPE 322

Query:   330 E-VTDDADSLKQLIQXXXXXXXXXXXXXXXXXXXXQPDEVALEGANEASEDEKELDTKVF 388
             E +    D+ ++L+                     + D +    + ++++  K  +TK+ 
Sbjct:   323 EEIVGSDDATEELV--GEGTEETNSSDDEEEVEEEENDSIEAISSMDSADYGKHSNTKLV 380

Query:   389 IGGVVHNNEDAPTKDEYVRMPADVKDLEKDSFVLHVPAKSL-DYDHTGESKMSKLKVAAL 447
             IGGV+HN ED+   DE VR+ A++ D E+DSF+LHVP +S  D D T ++++SK +V AL
Sbjct:   381 IGGVLHNIEDSSIDDEIVRVSANIMDTERDSFILHVPGRSKRDID-TRKNRVSKEQVTAL 439

Query:   448 AAQGVSELMPFDVAKAFWSSDKASSKVSRDVREVLKLAVSQAQKQSRLSEYTTFSRINTS 507
             AAQG+S+L+P +VA+AFW  +KAS KVS+ V E++KLA++QAQK + LSEYT F+RI T 
Sbjct:   440 AAQGLSDLLPPEVAEAFWG-EKASLKVSKHVHEIVKLAINQAQKGNHLSEYTAFNRIITP 498

Query:   508 EGDLDPFDGLYVGAFGPYGTEVVQLRRKYGQWS-GEGEKSSDMEFFEYVEAVKLTGDLNV 566
             E +LDPFDGLYVGAFGPYGTE+VQL+RKYG+W   EG  SSD+EFFEYVEAVKLTGD NV
Sbjct:   499 ESNLDPFDGLYVGAFGPYGTEIVQLKRKYGRWDDAEGSNSSDIEFFEYVEAVKLTGDPNV 558

Query:   567 PAGEVTFRAKIGKGSRLPNRGKFPDELGVVASYSGQGRIADFGFRNPKWVDGELLQLNGK 626
             PAG+VTFRA+IG GSR+ N G FP+ELGV+ASY GQG+IADFGF+ P+WV+G+LL+LNGK
Sbjct:   559 PAGQVTFRARIGNGSRMTNHGLFPEELGVLASYRGQGKIADFGFKKPRWVEGKLLKLNGK 618

GO:0003677 "DNA binding" evidence=IEA

GO:0004518 "nuclease activity" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0000304 "response to singlet oxygen" evidence=IGI

GO:0042651 "thylakoid membrane" evidence=IDA

GO:0010343 "singlet oxygen-mediated programmed cell death" evidence=IGI

TAIR|locus:2134168 EX1 "EXECUTER1" [Arabidopsis thaliana (taxid:3702)]

 Score = 908 (324.7 bits), Expect = 4.5e-91, P = 4.5e-91
 Identities = 214/556 (38%), Positives = 312/556 (56%)

Query:    93 DWDWNRWTRHFSEIEQAESYASLLKFQLEDAIEREDFXXXXXXXXXXXXXXSKDTVAEIM 152
             DWDW+RW +HF +++  +   S+LK QL  AI+RED+              + D V ++M
Sbjct:   110 DWDWDRWKKHFDQVDDQDRLLSVLKSQLNRAIKREDYEDAARLKVAIAATATNDAVGKVM 169

Query:   153 AQLKNAIDEERYHDASRLCRYTGSGLVGWWVGYSKDSDDPFGRLIQIKPGVGRFVARNYS 212
             +    A+ EERY DA  L    G+GLVGWW G S+D  DPFG ++QI    GR+VAR+Y+
Sbjct:   170 STFYRALLEERYKDAVYLRDKAGAGLVGWWSGISEDVKDPFGLIVQITAEHGRYVARSYN 229

Query:   213 PRQLVTASPGTPLFEIFVVKDNEESYVMQVVHLKQAK---GXXXXXXXXXXXXXXXXXXX 269
             PRQL T++ G PLFEIF+  D + +Y  Q V+LK  +                       
Sbjct:   230 PRQLSTSAAGAPLFEIFLTLDGKGNYKKQAVYLKWKEIFPDVPTMPSRTLTPGRFLTSPG 289

Query:   270 EVENASVVDVQGTKVKE-ERSDEKGINIEGVTEEGIKSVINFLKEKIPGLKVKVMNIDIT 328
               E+   + V+ ++ +E + SD+    +E     G +S   FL++ IPG+KVKVM +   
Sbjct:   290 RKEDTGNLAVESSEDEESDNSDDDSDLLE--ESSGFQS---FLRDMIPGVKVKVMKVTAP 344

Query:   329 AEVTDDADS--LKQLI-QXXXXXXXXXXXXXXXXXXXXQPDE----VALEGANEASEDE- 380
               V  D  S  ++Q+  +                    + DE    + LE   +   D  
Sbjct:   345 GRVDKDFISKVIEQIADEEDEENDLDIEDIDVEDDTKAEIDEKNADIELESVTDEIIDNN 404

Query:   381 --KELDTKVFIGGVVHN-NEDAPTKDEYVRMPADVKDLEKDSFVLHVPAKSLDYDHTGES 437
               +E+  K  IG +V   + + P K E +R PA+++ +E  SF L +  K L+   +   
Sbjct:   405 GGREIAVKFVIGDIVDRLSGNQPLK-ESLRSPANLESVENSSFYLRLE-KDLNVKESKGV 462

Query:   438 KMSKL---KVAALAAQGVSELMPFDVAKAFWSSDKASSKVSRDVREVLKLAVSQAQKQSR 494
             + + L   K +  + + +  +M  D+AK+     K S K+ +DV E+L L +SQAQ + +
Sbjct:   463 EGTTLVDGKGSRQSRRRIENIMG-DLAKSIEKEKKISVKMLKDVGELLSLTLSQAQNRQQ 521

Query:   495 LSEYTTFSRINTSEGDLDPFDGLYVGAFGPYGTEVVQLRRKYGQWSG--EGEKSSDMEFF 552
             LS  T F RI+ +   LDP DGLY+GA G Y +EV+ L+RK+GQW G  E +K +D+EF+
Sbjct:   522 LSGLTKFRRIDVTPS-LDPLDGLYIGAHGLYTSEVIHLKRKFGQWKGGKESKKPTDIEFY 580

Query:   553 EYVEAVKLTGDLNVPAGEVTFRAKIGKGSRLPNRGKFPDELGVVASYSGQGRIADFGFRN 612
             EYVEAVKLTGD  VPAG+V FRAKIG+   LP++G  P+E GV+A Y GQGR+AD GFRN
Sbjct:   581 EYVEAVKLTGDPYVPAGKVAFRAKIGRRYELPHKGLIPEEFGVIARYKGQGRLADPGFRN 640

Query:   613 PKWVDGELLQLNGKVV 628
             P+WVDGEL+ L+GK V
Sbjct:   641 PRWVDGELVILDGKYV 656

GO:0003677 "DNA binding" evidence=IEA

GO:0004518 "nuclease activity" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0000304 "response to singlet oxygen" evidence=IGI

GO:0042651 "thylakoid membrane" evidence=IDA

GO:0000302 "response to reactive oxygen species" evidence=RCA

GO:0010039 "response to iron ion" evidence=RCA

GO:0055072 "iron ion homeostasis" evidence=RCA

GO:0010343 "singlet oxygen-mediated programmed cell death" evidence=IGI

ASPGD|ASPL0000031789 AN5209 [Emericella nidulans (taxid:162425)]

 Score = 123 (48.4 bits), Expect = 0.00023, P = 0.00023
 Identities = 39/137 (28%), Positives = 67/137 (48%)

Query:   491 KQSRLSEYTTFSRINTSEGDLDPFDGLYVGAFGPYGTEVV---QLRRKYGQWSGEGEKSS 547
             +Q  +S Y+T      +     P+ G++VG +  +G E +   Q  ++  +      ++ 
Sbjct:   294 QQETMSTYSTLDPSLYTPTKEKPYQGIWVGDYSAHGCEFLLFLQRDKESDEDDARDPRND 353

Query:   548 DMEFFEYVEAVKLTGDLNVPAGEVTFRAK-IGKGS--RLPNRGKFPDELGVVASYSGQGR 604
             D+     +EAVKLTGD NVP G+ +F +  IG G   R+     F     VV S   +G 
Sbjct:   354 DIIQKGSLEAVKLTGDPNVPRGQFSFVSDDIGPGGTVRIATEALFQGAR-VVRS---RGH 409

Query:   605 IADFGFRNPKWVDGELL 621
             +A  GFR+  ++  +L+
Sbjct:   410 VAGLGFRDDTFITSQLI 426


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.314   0.133   0.386    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      628       550   0.00097  119 3  11 23  0.45    34
                                                     35  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  618 (66 KB)
  Total size of DFA:  305 KB (2157 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  44.74u 0.18s 44.92t   Elapsed:  00:00:02
  Total cpu time:  44.74u 0.18s 44.92t   Elapsed:  00:00:02
  Start:  Mon May 20 18:12:33 2013   End:  Mon May 20 18:12:35 2013

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00016102001 SubName- Full=Chromosome chr17 scaffold_12, whole genome shotgun sequence; (656 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	628
pfam12014	138	pfam12014, DUF3506, Domain of unknown function (DU	4e-58
pfam07743	78	pfam07743, HSCB_C, HSCB C-terminal oligomerisation	0.003

>gnl|CDD|192915 pfam12014, DUF3506, Domain of unknown function (DUF3506)

 Score =  191 bits (486), Expect = 4e-58
 Identities = 77/138 (55%), Positives = 96/138 (69%), Gaps = 7/138 (5%)

Query: 496 SEYTTFSRIN---TSEGDLDPFDGLYVGAFGPYGTEVVQLRRKYGQWSGE--GEKSSDME 550
              TTFSRI+    +    DP+ GLYVGA+  +G E + L +K GQW  +   ++ SD+E
Sbjct: 1   EGLTTFSRIDPELYTPTPEDPYRGLYVGAYSGHGCEFLLLLQKDGQWKEDDGSKEPSDIE 60

Query: 551 FFEYVEAVKLTGDLNVPAGEVTFRAKIGKGSRLP--NRGKFPDELGVVASYSGQGRIADF 608
           F+EYVEA+KLTGD NVP G+VTFRAKIGKG  +     G FP+ELGV+    GQG IAD 
Sbjct: 61  FYEYVEAIKLTGDPNVPRGQVTFRAKIGKGGLVRVAEEGLFPEELGVIRVVKGQGHIADP 120

Query: 609 GFRNPKWVDGELLQLNGK 626
           GFRNP+WVDGELL L+GK
Sbjct: 121 GFRNPRWVDGELLLLSGK 138

This presumed domain is functionally uncharacterized. This domain is found in eukaryotes. This domain is typically between 131 to 148 amino acids in length. This domain has a conserved KLTGD sequence motif. Length = 138

>gnl|CDD|219548 pfam07743, HSCB_C, HSCB C-terminal oligomerisation domain

 Score = 36.4 bits (85), Expect = 0.003
 Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 5/55 (9%)

Query: 119 QLEDAIEREDFEEAANLKNAIAEAASKDTVAEIMAQLKNAIDEERYHDASRLCRY 173
            LE+A   +D E    LK  +     K  + E++ +L+ A+DE+ + +A+ L R 
Sbjct: 16  ALEEARASDDEEALDELKKEV-----KQRIKELLEELEEALDEKDWEEAADLVRR 65

This domain is the HSCB C-terminal oligomerisation domain and is found on co-chaperone proteins. Length = 78

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	628
PF12014	134	DUF3506: Domain of unknown function (DUF3506); Int	100.0
PF02151	36	UVR: UvrB/uvrC motif; InterPro: IPR001943 During t	97.35
COG3880	176	Modulator of heat shock repressor CtsR, McsA [Sign	94.77
PF02151	36	UVR: UvrB/uvrC motif; InterPro: IPR001943 During t	93.69
PRK14668	577	uvrC excinuclease ABC subunit C; Provisional	91.5
PRK14671	621	uvrC excinuclease ABC subunit C; Provisional	91.38
TIGR00194	574	uvrC excinuclease ABC, C subunit. This family cons	90.71
PRK14666	694	uvrC excinuclease ABC subunit C; Provisional	90.08
COG0322	581	UvrC Nuclease subunit of the excinuclease complex	89.93
PRK14670	574	uvrC excinuclease ABC subunit C; Provisional	89.85
TIGR00631	655	uvrb excinuclease ABC, B subunit. This family is b	88.92
PRK07883	557	hypothetical protein; Validated	88.8
PRK05298	652	excinuclease ABC subunit B; Provisional	88.4
PRK14672	691	uvrC excinuclease ABC subunit C; Provisional	88.35
PRK12306	519	uvrC excinuclease ABC subunit C; Reviewed	87.56
PRK00558	598	uvrC excinuclease ABC subunit C; Validated	87.04
PRK14667	567	uvrC excinuclease ABC subunit C; Provisional	86.19
COG0556	663	UvrB Helicase subunit of the DNA excision repair c	85.7
PRK14669	624	uvrC excinuclease ABC subunit C; Provisional	84.25
KOG4825	666	consensus Component of synaptic membrane glycine-,	82.74

>PF12014 DUF3506: Domain of unknown function (DUF3506); InterPro: IPR021894 This presumed domain is functionally uncharacterised

Probab=100.00  E-value=1.1e-49  Score=366.43  Aligned_cols=128  Identities=44%  Similarity=0.769  Sum_probs=115.0

Q ss_pred             ccccceeee-eeecCCCCCCCCCceEeeccCCCCcEEEEEEEecCCCCCCCC--CCCccccceEEEEEEEcCCCCccCce
Q 006855          494 RLSEYTTFS-RINTSEGDLDPFDGLYVGAFGPYGTEVVQLRRKYGQWSGEGE--KSSDMEFFEYVEAVKLTGDLNVPAGE  570 (628)
Q Consensus       494 ~L~~~ttf~-RI~tPts~~kP~~GLwVGdYG~HG~EfL~L~~~~g~~~~~d~--~~sd~~~~~~LEAVKLTGDpNVPRGe  570 (628)
                      .+++|++++ ++||||+ .|||+|||||+||+||||||+|+|++++|.+++.  +.++.+|+++||||||||||||||||
T Consensus         2 ~~ttfstl~p~lytpt~-~~P~~GiwVGdyg~hG~Efl~l~q~~~~~~~~~~~~~~~~~~~~~~leAiKLTGDpNVPrGe   80 (134)
T PF12014_consen    2 GVTTFSTLDPELYTPTP-EKPFRGIWVGDYGPHGCEFLLLHQPDGQWDEDDGSKEPSDREFRGRLEAIKLTGDPNVPRGE   80 (134)
T ss_pred             CceEEEecChhccCCCC-CCCccceEEcccCCCCeEEEEEEccCCCccccccccccccccccceEEEEEecCCCCCcCcc
Confidence            355666666 6779999 8999999999999999999999999999987776  35788999999999999999999999


Q ss_pred             EEEEEE-cCCCCCCCCCCCCCCCCCceeE-EeeceeecCCCCCCCccccceEEEecC
Q 006855          571 VTFRAK-IGKGSRLPNRGKFPDELGVVAS-YSGQGRIADFGFRNPKWVDGELLQLNG  625 (628)
Q Consensus       571 VTF~A~-ig~~g~lp~~g~~peel~~gaR-vkgqG~VA~~GF~np~wIdgqLilIsg  625 (628)
                      |||+|+ ||+.++|   +++.+++|.|+| ||||||||++||+|++||+|||||||+
T Consensus        81 vtF~A~DiG~~~~i---~~a~~~~f~G~r~vk~~G~vA~~GF~~~~~id~eLilis~  134 (134)
T PF12014_consen   81 VTFRADDIGPGGRI---RVAHEGPFPGARRVKGQGHVAEPGFRNDKWIDGELILISG  134 (134)
T ss_pred             EEEEecccCCCccc---ccccCCCCCceEEEecCCeEcCcCcCCCcceeeEEEEecC
Confidence            999999 9999999   555566666777 999999999999999999999999996

This domain is found in eukaryotes. This domain is typically between 131 to 148 amino acids in length. This domain has a conserved KLTGD sequence motif.

>PF02151 UVR: UvrB/uvrC motif; InterPro: IPR001943 During the process of Escherichia coli nucleotide excision repair, DNA damage recognition and processing are achieved by the action of the uvrA, uvrB, and uvrC gene products []

Probab=97.35  E-value=0.00031  Score=52.29  Aligned_cols=35  Identities=37%  Similarity=0.548  Sum_probs=30.6

Q ss_pred             hHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhc
Q 006855          110 ESYASLLKFQLEDAIEREDFEEAANLKNAIAEAAS  144 (628)
Q Consensus       110 e~~~~~Lk~QLe~AV~~EDy~eAArLK~ai~~~~~  144 (628)
                      +..+..|+.+|+.||+.+||+.||+||+.|..+..
T Consensus         1 ~~~i~~l~~~m~~a~~~~dfE~Aa~~Rd~i~~l~~   35 (36)
T PF02151_consen    1 EKLIKELEEKMEEAVENEDFEKAARLRDQIKALKK   35 (36)
T ss_dssp             HHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHc
Confidence            35788999999999999999999999999998764

UvrB and UvrC share a common domain of around 35 amino acids, the so called UVR domain. This domain in UvrB can interact with the homologous domain in UvrC throughout a putative coiled coil structure. This interaction is important for the incision of the damaged strand [].; GO: 0003677 DNA binding, 0004518 nuclease activity, 0006289 nucleotide-excision repair; PDB: 3PXG_D 3PXI_C 1E52_B 1QOJ_B 2D7D_B 2NMV_B.

>COG3880 Modulator of heat shock repressor CtsR, McsA [Signal transduction mechanisms]

Probab=94.77  E-value=0.035  Score=54.76  Aligned_cols=38  Identities=39%  Similarity=0.517  Sum_probs=33.3

Q ss_pred             HhHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhcCC
Q 006855          109 AESYASLLKFQLEDAIEREDFEEAANLKNAIAEAASKD  146 (628)
Q Consensus       109 ~e~~~~~Lk~QLe~AV~~EDy~eAArLK~ai~~~~~~D  146 (628)
                      ..+=+..|+..|+++|++||||+||-+|+.|.++..++
T Consensus       134 ~~~~I~~L~e~Lq~~i~~EefEeAA~iRDqIr~Lk~k~  171 (176)
T COG3880         134 PKRKIIALKEALQDLIEREEFEEAAVIRDQIRALKAKN  171 (176)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            34556789999999999999999999999999998653

>PF02151 UVR: UvrB/uvrC motif; InterPro: IPR001943 During the process of Escherichia coli nucleotide excision repair, DNA damage recognition and processing are achieved by the action of the uvrA, uvrB, and uvrC gene products []

Probab=93.69  E-value=0.058  Score=40.23  Aligned_cols=26  Identities=23%  Similarity=0.512  Sum_probs=22.5

Q ss_pred             HHHHHHHHHHHhhhhhhhhhhhhhhc
Q 006855          148 VAEIMAQLKNAIDEERYHDASRLCRY  173 (628)
Q Consensus       148 V~~v~~~Lk~AI~EERY~DAA~LRD~  173 (628)
                      +..+...|+.|+++++|+.||+|||.
T Consensus         4 i~~l~~~m~~a~~~~dfE~Aa~~Rd~   29 (36)
T PF02151_consen    4 IKELEEKMEEAVENEDFEKAARLRDQ   29 (36)
T ss_dssp             HHHHHHHHHHHHHTT-CHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCHHHHHHHHHH
Confidence            45678899999999999999999996

UvrB and UvrC share a common domain of around 35 amino acids, the so called UVR domain. This domain in UvrB can interact with the homologous domain in UvrC throughout a putative coiled coil structure. This interaction is important for the incision of the damaged strand [].; GO: 0003677 DNA binding, 0004518 nuclease activity, 0006289 nucleotide-excision repair; PDB: 3PXG_D 3PXI_C 1E52_B 1QOJ_B 2D7D_B 2NMV_B.

>PRK14668 uvrC excinuclease ABC subunit C; Provisional

Probab=91.50  E-value=0.47  Score=54.16  Aligned_cols=49  Identities=22%  Similarity=0.382  Sum_probs=39.4

Q ss_pred             hHHHHhhhhHHHH-----HhHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhc
Q 006855           96 WNRWTRHFSEIEQ-----AESYASLLKFQLEDAIEREDFEEAANLKNAIAEAAS  144 (628)
Q Consensus        96 W~rW~rhF~~ve~-----~e~~~~~Lk~QLe~AV~~EDy~eAArLK~ai~~~~~  144 (628)
                      =+.|+.....+-.     ...++..|+.+|+.|.++.+||.||++|+.|.++..
T Consensus       179 ~e~Y~~~v~~~~~fL~G~~~~~~~~l~~~m~~aa~~l~FE~Aa~~Rd~i~~l~~  232 (577)
T PRK14668        179 EEAYAEDVESAERFFEGETGVLADPLRREMEAAAQAQEFERAANLRDRLEAVEA  232 (577)
T ss_pred             HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence            3456655565555     356889999999999999999999999999988653

>PRK14671 uvrC excinuclease ABC subunit C; Provisional

Probab=91.38  E-value=0.45  Score=54.68  Aligned_cols=50  Identities=24%  Similarity=0.290  Sum_probs=40.1

Q ss_pred             ChHHHHhhhhHHHH-----HhHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhc
Q 006855           95 DWNRWTRHFSEIEQ-----AESYASLLKFQLEDAIEREDFEEAANLKNAIAEAAS  144 (628)
Q Consensus        95 dW~rW~rhF~~ve~-----~e~~~~~Lk~QLe~AV~~EDy~eAArLK~ai~~~~~  144 (628)
                      +=+.|......+..     -..++..|+.+|+.|.++.+||.||++|+.|.++..
T Consensus       194 s~e~Y~~~v~~~~~fL~G~~~~l~~~L~~~M~~as~~l~FE~Aa~~RD~i~~l~~  248 (621)
T PRK14671        194 SEEDYLEMIEEIVRLLKGKTSALIRSLTEEMQRAAAELKFEEAAELKDQIESLKR  248 (621)
T ss_pred             CHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence            34567765555552     356789999999999999999999999999988753

>TIGR00194 uvrC excinuclease ABC, C subunit

Probab=90.71  E-value=0.66  Score=53.00  Aligned_cols=49  Identities=27%  Similarity=0.350  Sum_probs=38.6

Q ss_pred             hHHHHhhhhHHHHH-----hHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhc
Q 006855           96 WNRWTRHFSEIEQA-----ESYASLLKFQLEDAIEREDFEEAANLKNAIAEAAS  144 (628)
Q Consensus        96 W~rW~rhF~~ve~~-----e~~~~~Lk~QLe~AV~~EDy~eAArLK~ai~~~~~  144 (628)
                      =+.|+....++-+.     ..++..|+.+|+.|.++.+||.||++|+.|.++..
T Consensus       174 ~e~Y~~~v~~~~~fL~g~~~~~~~~L~~~M~~aa~~l~FE~Aa~~Rd~i~~l~~  227 (574)
T TIGR00194       174 EEEYQQIVEKIELFFNGRPQEVIKELEQKMEKASENLEFEEAARIRDQIAAVRE  227 (574)
T ss_pred             HHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence            35566554544443     56778999999999999999999999999988754

This family consists of the DNA repair enzyme UvrC, an ABC excinuclease subunit which interacts with the UvrA/UvrB complex to excise UV-damaged nucleotide segments.

>PRK14666 uvrC excinuclease ABC subunit C; Provisional

Probab=90.08  E-value=0.8  Score=53.53  Aligned_cols=51  Identities=22%  Similarity=0.303  Sum_probs=40.8

Q ss_pred             CChHHHHhhhhHHHH-----HhHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhc
Q 006855           94 WDWNRWTRHFSEIEQ-----AESYASLLKFQLEDAIEREDFEEAANLKNAIAEAAS  144 (628)
Q Consensus        94 ~dW~rW~rhF~~ve~-----~e~~~~~Lk~QLe~AV~~EDy~eAArLK~ai~~~~~  144 (628)
                      -+-+.|+..+..+..     ...++..|+.+|+.|+++.+||.||++|+.|.++..
T Consensus       179 is~e~Y~~~V~~v~~fL~G~~~~l~~~L~~~M~~AAe~l~FE~AA~lRD~i~aL~~  234 (694)
T PRK14666        179 VPRETYAALVRKVEMLLSGRSGELVDALRTEMEAASEALEFERAAVLRDQIRAVER  234 (694)
T ss_pred             CCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence            445677766665553     246778999999999999999999999999988754

>COG0322 UvrC Nuclease subunit of the excinuclease complex [DNA replication, recombination, and repair]

Probab=89.93  E-value=0.75  Score=52.75  Aligned_cols=50  Identities=24%  Similarity=0.328  Sum_probs=37.7

Q ss_pred             ChHHHHhhhhHHHHH-----hHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhc
Q 006855           95 DWNRWTRHFSEIEQA-----ESYASLLKFQLEDAIEREDFEEAANLKNAIAEAAS  144 (628)
Q Consensus        95 dW~rW~rhF~~ve~~-----e~~~~~Lk~QLe~AV~~EDy~eAArLK~ai~~~~~  144 (628)
                      +++.+++...++-+.     ..++..|+.+|+.|.+..|||.||+||+.|.++..
T Consensus       181 s~e~Y~e~v~~~~~fL~G~~~~v~~~L~~~M~~As~~l~FE~Aa~~RD~i~al~~  235 (581)
T COG0322         181 SEEEYREIVEEVKGFLKGKDDAVLQELEEKMEEASENLDFERAARLRDQIKALEK  235 (581)
T ss_pred             CHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH
Confidence            445555444444331     35568999999999999999999999999998764

>PRK14670 uvrC excinuclease ABC subunit C; Provisional

Probab=89.85  E-value=0.89  Score=52.05  Aligned_cols=50  Identities=22%  Similarity=0.381  Sum_probs=40.2

Q ss_pred             ChHHHHhhhhHHHH-----HhHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhc
Q 006855           95 DWNRWTRHFSEIEQ-----AESYASLLKFQLEDAIEREDFEEAANLKNAIAEAAS  144 (628)
Q Consensus        95 dW~rW~rhF~~ve~-----~e~~~~~Lk~QLe~AV~~EDy~eAArLK~ai~~~~~  144 (628)
                      +=+.|+..+..+..     -..++..|+.+|+.|.++.+||.||++|+.|.++..
T Consensus       156 ~~e~Y~~~v~~~~~fL~G~~~~~~~~L~~~M~~aa~~l~FE~Aa~~RD~i~al~~  210 (574)
T PRK14670        156 LEKEYQKEVDKIKHILNGNISKLLSQIEIKMKEAIQKEDFEAAIKLKETKRSLIE  210 (574)
T ss_pred             CHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence            34667766555543     246778999999999999999999999999988764

>TIGR00631 uvrb excinuclease ABC, B subunit

Probab=88.92  E-value=0.5  Score=54.52  Aligned_cols=37  Identities=27%  Similarity=0.386  Sum_probs=33.2

Q ss_pred             HHHHhHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHH
Q 006855          106 IEQAESYASLLKFQLEDAIEREDFEEAANLKNAIAEA  142 (628)
Q Consensus       106 ve~~e~~~~~Lk~QLe~AV~~EDy~eAArLK~ai~~~  142 (628)
                      -++.+.++..|+.+|..|++..+||+||++|+.|.++
T Consensus       618 ~~~~~~~i~~l~~~M~~aa~~l~FE~Aa~~RD~i~~L  654 (655)
T TIGR00631       618 KKELKKLIKQLEKEMKQAARNLEFEEAARLRDEILEL  654 (655)
T ss_pred             HHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence            3677889999999999999999999999999999876

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)

>PRK07883 hypothetical protein; Validated

Probab=88.80  E-value=0.53  Score=53.29  Aligned_cols=49  Identities=18%  Similarity=0.307  Sum_probs=38.3

Q ss_pred             hHHHHhhhhHHHH-----HhHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhc
Q 006855           96 WNRWTRHFSEIEQ-----AESYASLLKFQLEDAIEREDFEEAANLKNAIAEAAS  144 (628)
Q Consensus        96 W~rW~rhF~~ve~-----~e~~~~~Lk~QLe~AV~~EDy~eAArLK~ai~~~~~  144 (628)
                      =+.++++...+..     -..++..|+.+|+.|.++.+||.||++|+.|.++..
T Consensus       386 ~~~Y~~~v~~~~~fL~G~~~~~~~~l~~~M~~aa~~l~FE~Aa~~Rd~i~~l~~  439 (557)
T PRK07883        386 AAEYAEAVARARAALTGDDDAVLAALRARIDRLAAAERFEEAARLRDRLAALLR  439 (557)
T ss_pred             HHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence            3456655555443     245779999999999999999999999999987753

>PRK05298 excinuclease ABC subunit B; Provisional

Probab=88.40  E-value=0.62  Score=53.48  Aligned_cols=37  Identities=32%  Similarity=0.443  Sum_probs=32.7

Q ss_pred             HHhHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhc
Q 006855          108 QAESYASLLKFQLEDAIEREDFEEAANLKNAIAEAAS  144 (628)
Q Consensus       108 ~~e~~~~~Lk~QLe~AV~~EDy~eAArLK~ai~~~~~  144 (628)
                      ..+.++..|+.+|..|++..+||+||++|+.|.++..
T Consensus       610 ~~~~~~~~l~~~M~~aa~~l~fE~Aa~~Rd~i~~l~~  646 (652)
T PRK05298        610 ELEKLIKELEKQMKEAAKNLEFEEAARLRDEIKELKE  646 (652)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence            4457889999999999999999999999999998874

>PRK14672 uvrC excinuclease ABC subunit C; Provisional

Probab=88.35  E-value=1.2  Score=52.03  Aligned_cols=50  Identities=20%  Similarity=0.352  Sum_probs=39.5

Q ss_pred             ChHHHHhhhhHHHHH-----hHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhc
Q 006855           95 DWNRWTRHFSEIEQA-----ESYASLLKFQLEDAIEREDFEEAANLKNAIAEAAS  144 (628)
Q Consensus        95 dW~rW~rhF~~ve~~-----e~~~~~Lk~QLe~AV~~EDy~eAArLK~ai~~~~~  144 (628)
                      +=+.|+.....+...     ..++..|+.+|+.|.++.+||.||++|+.|.+++.
T Consensus       184 s~e~Y~~~V~~v~~fL~G~~~~ll~~L~~~M~~AA~~l~FE~AA~lRD~i~aL~~  238 (691)
T PRK14672        184 SPRTYQKDIHEITLLLEGNIDATVARLEKRMKRAVRQEAFEAAARIRDDIQAIRC  238 (691)
T ss_pred             CHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence            445677555555442     35778999999999999999999999999988753

>PRK12306 uvrC excinuclease ABC subunit C; Reviewed

Probab=87.56  E-value=0.7  Score=52.26  Aligned_cols=49  Identities=12%  Similarity=0.287  Sum_probs=37.9

Q ss_pred             hHHHHhhhhHHHH-----HhHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhc
Q 006855           96 WNRWTRHFSEIEQ-----AESYASLLKFQLEDAIEREDFEEAANLKNAIAEAAS  144 (628)
Q Consensus        96 W~rW~rhF~~ve~-----~e~~~~~Lk~QLe~AV~~EDy~eAArLK~ai~~~~~  144 (628)
                      =+.++.....+..     -..++..|+.+|+.|.++.+||.||++|+.|.++..
T Consensus       172 ~e~Y~~~v~~~~~fL~G~~~~~~~~L~~~M~~aa~~l~FE~Aa~~RD~l~~l~~  225 (519)
T PRK12306        172 SDEYLEQVKKAEEVLKGKIDELIEKLEEEMAEKAKNQQFERALVIRDEINAIEN  225 (519)
T ss_pred             HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence            3556644444433     245778999999999999999999999999988764

>PRK00558 uvrC excinuclease ABC subunit C; Validated

Probab=87.04  E-value=0.77  Score=52.54  Aligned_cols=50  Identities=20%  Similarity=0.281  Sum_probs=37.8

Q ss_pred             ChHHHHhhhhHHHH-----HhHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhc
Q 006855           95 DWNRWTRHFSEIEQ-----AESYASLLKFQLEDAIEREDFEEAANLKNAIAEAAS  144 (628)
Q Consensus        95 dW~rW~rhF~~ve~-----~e~~~~~Lk~QLe~AV~~EDy~eAArLK~ai~~~~~  144 (628)
                      +-+.++.....+-+     ...++..|+.+|+.|+++.+||.||++|+.|.++..
T Consensus       181 ~~e~Y~~~v~~~~~fL~G~~~~~i~~L~~~M~~aa~~l~FE~Aa~~RD~i~aL~~  235 (598)
T PRK00558        181 SKEEYAELVDEAKLFLSGKTDEVLKELEEKMEEASENLEFERAARYRDQIQALRR  235 (598)
T ss_pred             CHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHH
Confidence            44556644443332     245678999999999999999999999999988754

>PRK14667 uvrC excinuclease ABC subunit C; Provisional

Probab=86.19  E-value=0.93  Score=51.81  Aligned_cols=50  Identities=14%  Similarity=0.159  Sum_probs=39.2

Q ss_pred             ChHHHHhhhhHHHH-----HhHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhc
Q 006855           95 DWNRWTRHFSEIEQ-----AESYASLLKFQLEDAIEREDFEEAANLKNAIAEAAS  144 (628)
Q Consensus        95 dW~rW~rhF~~ve~-----~e~~~~~Lk~QLe~AV~~EDy~eAArLK~ai~~~~~  144 (628)
                      +=+.|......+-.     ...++..|+.+|+.|.++.+||.||++|+.|.+++.
T Consensus       178 s~e~Y~~~v~~~~~fL~G~~~~l~~~L~~~M~~aa~~l~FE~Aa~~RD~i~~l~~  232 (567)
T PRK14667        178 SKEDYELSVKSAKAFLSGNVKEVLPELYDKIEEYSQKLMFEKAAVIRDQILALEN  232 (567)
T ss_pred             CHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence            33556655555443     346789999999999999999999999999988754

>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]

Probab=85.70  E-value=1.1  Score=51.34  Aligned_cols=40  Identities=28%  Similarity=0.410  Sum_probs=35.6

Q ss_pred             HHHHhHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhcC
Q 006855          106 IEQAESYASLLKFQLEDAIEREDFEEAANLKNAIAEAASK  145 (628)
Q Consensus       106 ve~~e~~~~~Lk~QLe~AV~~EDy~eAArLK~ai~~~~~~  145 (628)
                      -.+.+.++..|+.||.+|++.-+|+.||+||+.|.+++..
T Consensus       619 ~~e~~~~I~~Le~~M~~aA~~l~FE~Aa~lRD~i~~L~~~  658 (663)
T COG0556         619 KKELEKLIKKLEKEMKEAAKNLEFEEAARLRDEIKELKEE  658 (663)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence            3567788899999999999999999999999999988753

>PRK14669 uvrC excinuclease ABC subunit C; Provisional

Probab=84.25  E-value=1.3  Score=51.26  Aligned_cols=49  Identities=18%  Similarity=0.246  Sum_probs=39.0

Q ss_pred             hHHHHhhhhHHHH-----HhHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhc
Q 006855           96 WNRWTRHFSEIEQ-----AESYASLLKFQLEDAIEREDFEEAANLKNAIAEAAS  144 (628)
Q Consensus        96 W~rW~rhF~~ve~-----~e~~~~~Lk~QLe~AV~~EDy~eAArLK~ai~~~~~  144 (628)
                      =+.+++.+..+..     ...++..|+.+|+.|.++.+||.||++|+.|.++..
T Consensus       183 ~e~Y~~~v~~v~~fL~G~~~~l~~~L~~~M~~aa~~l~FE~Aa~~RD~i~~l~~  236 (624)
T PRK14669        183 DEAYAEAVRDVRLFLEGRHSDLARSLRARMEAAALEMQFELAAKYRDLITTVEE  236 (624)
T ss_pred             HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence            3556655555543     256778999999999999999999999999988653

>KOG4825 consensus Component of synaptic membrane glycine-, glutamate- and thienylcyclohexylpiperidine-binding glycoprotein (43kDa) [Signal transduction mechanisms]

Probab=82.74  E-value=2.7  Score=47.58  Aligned_cols=62  Identities=24%  Similarity=0.303  Sum_probs=50.9

Q ss_pred             HhHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhcCChHHHHHHHHHH----Hhhhhhhhhhhhhhhc
Q 006855          109 AESYASLLKFQLEDAIEREDFEEAANLKNAIAEAASKDTVAEIMAQLKN----AIDEERYHDASRLCRY  173 (628)
Q Consensus       109 ~e~~~~~Lk~QLe~AV~~EDy~eAArLK~ai~~~~~~D~V~~v~~~Lk~----AI~EERY~DAA~LRD~  173 (628)
                      ++.+.-.|...-++||.+|||.-|-++|.||+.+..   +++-|..|++    |++.|.|+-|-.+.|+
T Consensus       169 laaiIgaidenKqeAVakEdfdlAKkaklAiaDLkK---sgeeleelEndKgcAVadEDfdlAkdkkde  234 (666)
T KOG4825|consen  169 LAAIIGAIDENKQEAVAKEDFDLAKKAKLAIADLKK---SGEELEELENDKGCAVADEDFDLAKDKKDE  234 (666)
T ss_pred             HHHHHHHHHhhHHHHHhhhhhhHHHHHHHHHHHHHH---HHHHHHHHhhcccccccchhhhHHHHHHHH
Confidence            444555667777899999999999999999999986   6666777765    9999999999877765

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	628
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-08

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 55.2 bits (132), Expect = 5e-08
 Identities = 83/620 (13%), Positives = 176/620 (28%), Gaps = 202/620 (32%)

Query: 102 HFSEIEQAE---SYASLLKFQLEDAIEREDFEEAAN-LKNAIAEAASKDTVAEIMAQLKN 157
           H  + E  E    Y  +L    +  ++  D ++  +  K+ +    SK+ +  I+   K+
Sbjct: 5   HHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSIL----SKEEIDHII-MSKD 59

Query: 158 AIDEERYHDASRLCRYTGSGLVGWWVGYSKDSDDPFGRLIQIKPGVGRFV----ARNY-- 211
           A+         RL          +W   SK  +            V +FV      NY  
Sbjct: 60  AVSGTL-----RL----------FWTLLSKQEE-----------MVQKFVEEVLRINYKF 93

Query: 212 --SPRQLVTASPGTPLFEIFVVKDNEESYVMQVVHLKQAKGTSTNSTSSPSKSTKSPSTS 269
             SP +     P                Y+ Q   L      + N   +    ++     
Sbjct: 94  LMSPIKTEQRQP----------SMMTRMYIEQRDRLY-----NDNQVFAKYNVSRLQPYL 138

Query: 270 EVENASVVDVQGTKVKEERSDEKGINIEGVTEEGIKSV---------------------I 308
           ++  A         + E R   K + I+GV   G K+                      +
Sbjct: 139 KLRQA---------LLELRP-AKNVLIDGVLGSG-KTWVALDVCLSYKVQCKMDFKIFWL 187

Query: 309 NFLKEKIPGLKVKVMN-------------IDITAEVTDDADSLKQ--------------- 340
           N      P   ++++               D ++ +     S++                
Sbjct: 188 NLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL 247

Query: 341 LI----QDGEEAESSD----------SEGEADDIEEIQPDEVALEGANEA-SEDE-KELD 384
           L+    Q+ +   + +           +   D +       ++L+  +   + DE K L 
Sbjct: 248 LVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLL 307

Query: 385 TKVFIGGVVHNNEDAPTKDEYVRMPADVKDLEKDSFVLHVPAKSLD--------YDHTGE 436
            K           D   +D    +P +V     +   L + A+S+         + H   
Sbjct: 308 LKYL---------DCRPQD----LPREVLTT--NPRRLSIIAESIRDGLATWDNWKHVNC 352

Query: 437 SKMSKLKVAALAAQGVSEL---------------MPFDVAKAFWSSDKASSKVSRDVREV 481
            K++ +  ++L     +E                +P  +    W           DV  V
Sbjct: 353 DKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI-----KSDVMVV 407

Query: 482 L-----KLAVSQAQKQSRLSEYTTFSRINTSEGDLDPFDGLYVGAFGPYGTEVVQLRRKY 536
           +        V +  K+S +S  + +  +     +        V  +         + + +
Sbjct: 408 VNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHY--------NIPKTF 459

Query: 537 GQWSGEGEKSSDMEFFEYV----EAVKLTGDLNV-PAGEVTFR---AKI-GKGSRLPNRG 587
                      D  F+ ++    + ++    + +     + FR    KI    +     G
Sbjct: 460 DSD-DLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASG 518

Query: 588 KFPDELGVVASYSGQGRIAD 607
              + L  +  Y  +  I D
Sbjct: 519 SILNTLQQLKFY--KPYICD 536

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	628
1e52_A	63	Excinuclease ABC subunit; DNA excision repair, UVR	96.69
2d7d_A	661	Uvrabc system protein B; helicase, protein-DNA-ADP	92.21
1c4o_A	664	DNA nucleotide excision repair enzyme UVRB; uvrabc	86.49
1e52_A	63	Excinuclease ABC subunit; DNA excision repair, UVR	86.37

>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*

Probab=92.21  E-value=0.091  Score=58.02  Aligned_cols=38  Identities=21%  Similarity=0.415  Sum_probs=26.1

Q ss_pred             HHHhHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhc
Q 006855          107 EQAESYASLLKFQLEDAIEREDFEEAANLKNAIAEAAS  144 (628)
Q Consensus       107 e~~e~~~~~Lk~QLe~AV~~EDy~eAArLK~ai~~~~~  144 (628)
                      ++...++..|+.+|..|++.+|||.||+||+.|.+++.
T Consensus       622 ~~~~~~i~~l~~~m~~aa~~~~fe~Aa~~Rd~i~~l~~  659 (661)
T 2d7d_A          622 KERQKVVEQMEHEMKEAAKALDFERAAELRDLLLELKA  659 (661)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHC-----
T ss_pred             HHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHh
Confidence            35666777888888888888888888888888877754

>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*

Probab=86.49  E-value=0.13  Score=56.74  Aligned_cols=39  Identities=28%  Similarity=0.373  Sum_probs=0.0

Q ss_pred             HHHhHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhcC
Q 006855          107 EQAESYASLLKFQLEDAIEREDFEEAANLKNAIAEAASK  145 (628)
Q Consensus       107 e~~e~~~~~Lk~QLe~AV~~EDy~eAArLK~ai~~~~~~  145 (628)
                      ++.+..+..|+.+|.+|++.++|+.||+||+.|.+++..
T Consensus       607 ~~~~~~i~~l~~~m~~aa~~l~fe~Aa~lRd~i~~l~~~  645 (664)
T 1c4o_A          607 EDLRERIAELELAMWQAAEALDFERAARLRDEIRALEAR  645 (664)
T ss_dssp             ---------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHH
Confidence            466777888899999999999999999999998887753

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	628
d1e52a_	56	C-terminal UvrC-binding domain of UvrB {Escherichi	96.6
d1e52a_	56	C-terminal UvrC-binding domain of UvrB {Escherichi	83.75

>d1e52a_ a.2.9.1 (A:) C-terminal UvrC-binding domain of UvrB {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: C-terminal UvrC-binding domain of UvrB
family: C-terminal UvrC-binding domain of UvrB
domain: C-terminal UvrC-binding domain of UvrB
species: Escherichia coli [TaxId: 562]

Probab=96.60  E-value=0.00088  Score=51.94  Aligned_cols=38  Identities=16%  Similarity=0.226  Sum_probs=34.6

Q ss_pred             HHHhHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhc
Q 006855          107 EQAESYASLLKFQLEDAIEREDFEEAANLKNAIAEAAS  144 (628)
Q Consensus       107 e~~e~~~~~Lk~QLe~AV~~EDy~eAArLK~ai~~~~~  144 (628)
                      ++.+..+..|+.+|..|+++.||++||+||+.|.++..
T Consensus        13 ~el~k~i~~Le~~M~~aa~~l~FE~AA~~RD~I~~l~~   50 (56)
T d1e52a_          13 KALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQLRE   50 (56)
T ss_dssp             SHHHHHHHHHHHHHHHHHHTTCHHHHTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
Confidence            46678899999999999999999999999999998864

>d1e52a_ a.2.9.1 (A:) C-terminal UvrC-binding domain of UvrB {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: C-terminal UvrC-binding domain of UvrB
family: C-terminal UvrC-binding domain of UvrB
domain: C-terminal UvrC-binding domain of UvrB
species: Escherichia coli [TaxId: 562]

Probab=83.75  E-value=0.26  Score=37.74  Aligned_cols=26  Identities=8%  Similarity=0.224  Sum_probs=23.2

Q ss_pred             HHHHHHHHHHHhhhhhhhhhhhhhhc
Q 006855          148 VAEIMAQLKNAIDEERYHDASRLCRY  173 (628)
Q Consensus       148 V~~v~~~Lk~AI~EERY~DAA~LRD~  173 (628)
                      +-.+..+|+.|.+..+|+.||+|||.
T Consensus        19 i~~Le~~M~~aa~~l~FE~AA~~RD~   44 (56)
T d1e52a_          19 IHELEGLMMQHAQNLEFEEAAQIRDQ   44 (56)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHTTHHHH
T ss_pred             HHHHHHHHHHHHHHCCHHHHHHHHHH
Confidence            44677899999999999999999996