Citrus Sinensis ID: 006857

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------63
MNTERVKFVRFDDWNSENSYSEQKPSNDDGFYPRVMRPTLSAVMDSIRRGYEMGSERIKSWKKPLSFRSHVMQSEKKSVSEKRILDPQGPFLQWWNKIFVLSCVIALSIDPLFFYMPVIDGKRKCLGLDKTLEITACVLRSFIDTFYILRIIFQFRTGFIARSSRVFGRGELVDDPKAIAKRYLMSYFIVDILAILPLPQLVVLIIVPAVKGPVPLVAKEMLKTIIFCQYVPRIARIYPLYNDVKRTSGILTETAWAGAALNLFLYMLASHIFGACWYLYSIERQDSCWRDVCRKLNDTSNCTTNLYCGEFHGSNNTLLHGSCPFISPDEIKNSSMFNFGISIDALQSRVVEEHDFPKKFFYCFWWGLRNLSSLGQNLKTSTFVGEVFFAIFISISGLVLFALLIGNMQKYLESTTVRLEEMRVKRQDAEQWMSHRMLPENLRDRIRRYEQYKWQETRGVEEEGLLRNLPKDLRRDIKRHLCWDLLMRVPMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFCGEALLTWALDPQSSSNRPLSTRTVQALTEVEAFSLMADDLKSVASQFRRLHSKQLQHAFRQVFFEFIA
cccccccEEEEccccccccccccccccccccccccccccccHHHHHHHccccccccccccccccccccccccccccccccccEEEccccHHHHHHHHHHHHHHHHHHHccccccEEEEEcccccccccccccEEEEEHHHHHHHHHHHHHHHHHHHEEEEcccccccccccccccHHHHHHHHHccccEEEEEEccccccEEEEEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccccccHHHHHHHccHHHHHHHHHHHcHHHHHccccHHcccHHHHHHHHHHHcccccccccEEEEccccccEEEEEEEcEEEEEEEcccccccEEEEEEccccEEccHHHHHccccccccccccccccEEEccEEEEEEccHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
ccccccEEEEEEccccccccccccccccccccccccccccccHHHHHHHHHHccHcccHHHcccccccccccccccccccccEEEccccHHHHHHHHHHHHHHHHHHHHcHHHHHEHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHEEcccccEEcccEEEccHHHHHHHHHHcccHHHHHHHccccEEEEEEEccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEEEcccccccccccccccccccccccccccccccEEEEcccccccccccccHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcccccHHHHHHcccHHHHHHHHHHHHHHHHHHcHHHHHHcHHHHHHHHHHHcccccccccEEEEccccccEEEEEEEcEEEEEEcccccccEEEEEEEccccccHHHHHHHHcccccccccccccccHHEEHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
mntervkfvrfddwnsensyseqkpsnddgfyprvmrptLSAVMDSIRRGYEMGSERIKSWKKPLSFRSHVMQsekksvsekrildpqgpflqwWNKIFVLSCVIAlsidplffympvidgkrkclgldktlEITACVLRSFIDTFYILRIIFQFRTGFIarssrvfgrgelvddpKAIAKRYLMSYFIVDILailplpqlVVLIIvpavkgpvpLVAKEMLKTIIFCQYVpriariyplyndvkrtsgilTETAWAGAALNLFLYMLASHIFGACWYLYSIERQDSCWRDVCRklndtsncttnlycgefhgsnntllhgscpfispdeiknssmfnFGISIDALQSRvveehdfpkkffYCFWWGlrnlsslgqnlktstfVGEVFFAIFISISGLVLFALLIGNMQKYLESTTVRLEEMRVKRQDAEQWMSHRMLPENLRDRIRRYEQYKWqetrgveeegllrnlpkDLRRDIKRHLCWDLLMRVPMFEKMDDQLLDAMCdhlkpvlyteksfivregdpvEEMLFVMRGNLvstttyggrtgFFNAVYLKAGDFCGEALLTwaldpqsssnrplstrTVQALTEVEAFSLMADDLKSVASQFRRLHSKQLQHAFRQVFFEFIA
mntervkfvrfddwnsensyseqkpsnddgfypRVMRPTLSAVMDSIRRGYEMGserikswkkplsfrshvmqsekksvsekriLDPQGPFLQWWNKIFVLSCVIALSIDPLFFYMPVIDGKRKCLGLDKTLEITACVLRSFIDTFYILRIIFQFRTGFIArssrvfgrgelvddPKAIAKRYLMSYFIVDILAILPLPQLVVLIIVPAVKGPVPLVAKEMLKTIIFCQYVPRIARIYPLYNDVKRTSGILTETAWAGAALNLFLYMLASHIFGACWYLYSIERQDSCWRDVCRKLNDTSNCTTNLYCGEFHGSNNTLLHGSCPFISPDEIKNSSMFNFGISIDALQSRVVEEHDFPKKFFYCFWWGLRNLSSLGQNLKTSTFVGEVFFAIFISISGLVLFALLIGNMQKYLESTTVRLEEMRVKrqdaeqwmshrmlpenlrdRIRRYEQYkwqetrgveeegllrnlpkdlrrDIKRHLCWDLLMRVPMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFCGEALLTWAldpqsssnrplSTRTVQALTEVEAFSLMADDLKSVASQFRRLHSKQLQHAFRQVFFEFIA
MNTERVKFVRFDDWNSENSYSEQKPSNDDGFYPRVMRPTLSAVMDSIRRGYEMGSERIKSWKKPLSFRSHVMQSEKKSVSEKRILDPQGPFLQWWNKIFVLSCVIALSIDPLFFYMPVIDGKRKCLGLDKTLEITACVLRSFIDTFYILRIIFQFRTGFIARSSRVFGRGELVDDPKAIAKRYLMSYFIVDilailplpqlvvliivpavKGPVPLVAKEMLKTIIFCQYVPRIARIYPLYNDVKRTSGILTETAWAGAALNLFLYMLASHIFGACWYLYSIERQDSCWRDVCRKLNDTSNCTTNLYCGEFHGSNNTLLHGSCPFISPDEIKNSSMFNFGISIDALQSRVVEEHDFPKKFFYCFWWGLRNLSSLGQNLKTSTFVGEVFFAIFISISGLVLFALLIGNMQKYLESTTVRLEEMRVKRQDAEQWMSHRMLPENLRDRIRRYEQYKWQETRGVEEEGLLRNLPKDLRRDIKRHLCWDLLMRVPMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFCGEALLTWALDPQSSSNRPLSTRTVQALTEVEAFSLMADDLKSVASQFRRLHSKQLQHAFRQVFFEFIA
*************************************************************************************DPQGPFLQWWNKIFVLSCVIALSIDPLFFYMPVIDGKRKCLGLDKTLEITACVLRSFIDTFYILRIIFQFRTGFIARSSRVFGRGELVDDPKAIAKRYLMSYFIVDILAILPLPQLVVLIIVPAVKGPVPLVAKEMLKTIIFCQYVPRIARIYPLYNDVKRTSGILTETAWAGAALNLFLYMLASHIFGACWYLYSIERQDSCWRDVCRKLNDTSNCTTNLYCGEFHGSNNTLLHGSCPFISPDEIKNSSMFNFGISIDALQSRVVEEHDFPKKFFYCFWWGLRNLSSLGQNLKTSTFVGEVFFAIFISISGLVLFALLIGNMQKYLESTTVRLEEM*********W*****L*ENLRDRIRRYEQYKWQETRGVEEEGLLRNLPKDLRRDIKRHLCWDLLMRVPMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFCGEALLTWALD***************ALTEVEAFSLMADDLKSVASQFRRLHSKQLQHAFRQVFFEFI*
*****VK*************************************************************************EKRILDPQGPFLQWWNKIFVLSCVIALSIDPLFFYMPVIDGKRKCLGLDKTLEITACVLRSFIDTFYILRIIFQFRTGFIARSSRVFGRGELVDDPKAIAKRYLMSYFIVDILAILPLPQLVVLIIVPAVKGPVPLVAKEMLKTIIFCQYVPRIARIYPLYNDVKRTSGILTETAWAGAALNLFLYMLASHIFGACWYLYSIERQDSCWRDVCRKLNDTSNCTTNLYCGEFHGSNNTLLHGSCPFISPDEIKNSSMFNFGISIDALQSRVVEEHDFPKKFFYCFWWGLRNLSSLGQNLKTSTFVGEVFFAIFISISGLVLFALLIGNMQKYLESTTVRLEEMRVKRQDAEQWMSHRMLPENLRDRIRRYEQYKWQETRGVEEEGLLRNLPKDLRRDIKRHLCWDLLMRVPMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFCGEALLTWALD**********TRTVQALTEVEAFSLMADDLKSVASQFRRLHSKQLQHAFRQVFFEF**
MNTERVKFVRFDDWNSE*********NDDGFYPRVMRPTLSAVMDSIRRGYEMGSERIKSWKKPLSFR**************RILDPQGPFLQWWNKIFVLSCVIALSIDPLFFYMPVIDGKRKCLGLDKTLEITACVLRSFIDTFYILRIIFQFRTGFIARSSRVFGRGELVDDPKAIAKRYLMSYFIVDILAILPLPQLVVLIIVPAVKGPVPLVAKEMLKTIIFCQYVPRIARIYPLYNDVKRTSGILTETAWAGAALNLFLYMLASHIFGACWYLYSIERQDSCWRDVCRKLNDTSNCTTNLYCGEFHGSNNTLLHGSCPFISPDEIKNSSMFNFGISIDALQSRVVEEHDFPKKFFYCFWWGLRNLSSLGQNLKTSTFVGEVFFAIFISISGLVLFALLIGNMQKYLESTTVRLEEMRVKRQDAEQWMSHRMLPENLRDRIRRYEQYKWQETRGVEEEGLLRNLPKDLRRDIKRHLCWDLLMRVPMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFCGEALLTWALDP***********TVQALTEVEAFSLMADDLKSVASQFRRLHSKQLQHAFRQVFFEFIA
*****VKFVRFDDWN***************************************************************VSEKRILDPQGPFLQWWNKIFVLSCVIALSIDPLFFYMPVIDGKRKCLGLDKTLEITACVLRSFIDTFYILRIIFQFRTGFIARSSRVFGRGELVDDPKAIAKRYLMSYFIVDILAILPLPQLVVLIIVPAVKGPVPLVAKEMLKTIIFCQYVPRIARIYPLYNDVKRTSGILTETAWAGAALNLFLYMLASHIFGACWYLYSIERQDSCWRDVCRKLNDTSNCTTNLYCGEFHGSNNTLLHGSCPFISPDEIKNSSMFNFGISIDALQSRVVEEHDFPKKFFYCFWWGLRNLSSLGQNLKTSTFVGEVFFAIFISISGLVLFALLIGNMQKYLESTTVRLEEMRVKRQDAEQWMSHRMLPENLRDRIRRYEQYKWQETRGVEEEGLLRNLPKDLRRDIKRHLCWDLLMRVPMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFCGEALLTWALDPQSSSNRPLSTRTVQALTEVEAFSLMADDLKSVASQFRRLHSKQLQHAFRQVFFEFIA
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MNTERVKFVRFDDWNSENSYSEQKPSNDDGFYPRVMRPTLSAVMDSIRRGYEMGSERIKSWKKPLSFRSHVMQSEKKSVSEKRILDPQGPFLQWWNKIFVLSCVIALSIDPLFFYMPVIDGKRKCLGLDKTLEITACVLRSFIDTFYILRIIFQFRTGFIARSSRVFGRGELVDDPKAIAKRYLMSYFIVDILAILPLPQLVVLIIVPAVKGPVPLVAKEMLKTIIFCQYVPRIARIYPLYNDVKRTSGILTETAWAGAALNLFLYMLASHIFGACWYLYSIERQDSCWRDVCRKLNDTSNCTTNLYCGEFHGSNNTLLHGSCPFISPDEIKNSSMFNFGISIDALQSRVVEEHDFPKKFFYCFWWGLRNLSSLGQNLKTSTFVGEVFFAIFISISGLVLFALLIGNMQKYLESTTVRLEEMRVKRQDAEQWMSHRMLPENLRDRIRRYEQYKWQETRGVEEEGLLRNLPKDLRRDIKRHLCWDLLMRVPMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFCGEALLTWALDPQSSSNRPLSTRTVQALTEVEAFSLMADDLKSVASQFRRLHSKQLQHAFRQVFFEFIA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query628 2.2.26 [Sep-21-2011]
O65717716 Cyclic nucleotide-gated i yes no 0.979 0.858 0.669 0.0
Q9LD40696 Putative cyclic nucleotid no no 0.944 0.852 0.684 0.0
Q9LNJ0 711 Probable cyclic nucleotid no no 0.941 0.831 0.674 0.0
Q9SKD7706 Probable cyclic nucleotid no no 0.958 0.852 0.657 0.0
O82226747 Probable cyclic nucleotid no no 0.979 0.823 0.537 0.0
Q9M0A4733 Putative cyclic nucleotid no no 0.964 0.826 0.545 0.0
Q8RWS9717 Probable cyclic nucleotid no no 0.971 0.850 0.538 0.0
Q9FXH6 753 Putative cyclic nucleotid no no 0.984 0.820 0.545 0.0
Q9S9N5738 Putative cyclic nucleotid no no 0.974 0.829 0.533 0.0
Q9SJA4 726 Probable cyclic nucleotid no no 0.867 0.750 0.542 1e-176
>sp|O65717|CNGC1_ARATH Cyclic nucleotide-gated ion channel 1 OS=Arabidopsis thaliana GN=CNGC1 PE=1 SV=1 Back     alignment and function desciption
 Score =  861 bits (2225), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 415/620 (66%), Positives = 493/620 (79%), Gaps = 5/620 (0%)

Query: 1   MNTERVKFVRFDDWNSENSYSEQKPSNDDGFYPRVMRPTLSAVMDSIRRGYEMGSERIKS 60
           MN  + KFVRF DW S+ + S+ + S  +     + + T+S++ D   R +E  S RIK 
Sbjct: 1   MNFRQEKFVRFQDWKSDKTSSDVEYSGKNEIQTGIFQRTISSISDKFYRSFESSSARIKL 60

Query: 61  WKKPLSFRSHVMQSEKKSVSEKRILDPQGPFLQWWNKIFVLSCVIALSIDPLFFYMPVID 120
           +K+     S      K   S  +ILDPQGPFLQ WNKIFVL+C+IA+S+DPLFFY+P+ID
Sbjct: 61  FKRSYKSYSFKEAVSKGIGSTHKILDPQGPFLQRWNKIFVLACIIAVSLDPLFFYVPIID 120

Query: 121 GKRKCLGLDKTLEITACVLRSFIDTFYILRIIFQFRTGFIARSSRVFGRGELVDDPKAIA 180
             +KCLG+DK +EITA VLRSF D FY+L IIFQFRTGFIA SSRVFGRG LV+D + IA
Sbjct: 121 DAKKCLGIDKKMEITASVLRSFTDVFYVLHIIFQFRTGFIAPSSRVFGRGVLVEDKREIA 180

Query: 181 KRYLMSYFIVDILAILPLPQLVVLIIVPAVKGPVPLVAKEMLKTIIFCQYVPRIARIYPL 240
           KRYL S+FI+DILA+LPLPQ+V+LII+P ++G   L  K MLK I+F QY+PR  RIYPL
Sbjct: 181 KRYLSSHFIIDILAVLPLPQMVILIIIPHMRGSSSLNTKNMLKFIVFFQYIPRFIRIYPL 240

Query: 241 YNDVKRTSGILTETAWAGAALNLFLYMLASHIFGACWYLYSIERQDSCWRDVCRKLNDTS 300
           Y +V RTSGILTETAWAGAA NLFLYMLASH+FGA WYL+SIER+  CW+  C + N+  
Sbjct: 241 YKEVTRTSGILTETAWAGAAFNLFLYMLASHVFGAFWYLFSIERETVCWKQACER-NNPP 299

Query: 301 NCTTNLYCGEFHGSNNTLLHGSCPFISPDEIKNSSMFNFGISIDALQSRVVEEHDFPKKF 360
             +  LYC       N  L+ SCP  +P    N+++F+FGI +DALQS VVE  DFP+KF
Sbjct: 300 CISKLLYCDPETAGGNAFLNESCPIQTP----NTTLFDFGIFLDALQSGVVESQDFPQKF 355

Query: 361 FYCFWWGLRNLSSLGQNLKTSTFVGEVFFAIFISISGLVLFALLIGNMQKYLESTTVRLE 420
           FYCFWWGL+NLSSLGQNLKTST++ E+ FA+FISI+GLVLF+ LIGNMQ YL+STT RLE
Sbjct: 356 FYCFWWGLQNLSSLGQNLKTSTYIWEICFAVFISIAGLVLFSFLIGNMQTYLQSTTTRLE 415

Query: 421 EMRVKRQDAEQWMSHRMLPENLRDRIRRYEQYKWQETRGVEEEGLLRNLPKDLRRDIKRH 480
           EMRVKR+DAEQWMSHR+LPENLR RIRRYEQYKWQETRGV+EE LL NLPKDLRRDIKRH
Sbjct: 416 EMRVKRRDAEQWMSHRLLPENLRKRIRRYEQYKWQETRGVDEENLLSNLPKDLRRDIKRH 475

Query: 481 LCWDLLMRVPMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTT 540
           LC  LLMRVPMFEKMD+QLLDA+CD L+PVLYTE+S+IVREGDPV+EMLF+MRG L++ T
Sbjct: 476 LCLALLMRVPMFEKMDEQLLDALCDRLQPVLYTEESYIVREGDPVDEMLFIMRGKLLTIT 535

Query: 541 TYGGRTGFFNAVYLKAGDFCGEALLTWALDPQSSSNRPLSTRTVQALTEVEAFSLMADDL 600
           T GGRTGF N+ YL AGDFCGE LLTWALDP SSSN P+STRTV+AL EVEAF+L ADDL
Sbjct: 536 TNGGRTGFLNSEYLGAGDFCGEELLTWALDPHSSSNLPISTRTVRALMEVEAFALKADDL 595

Query: 601 KSVASQFRRLHSKQLQHAFR 620
           K VASQFRRLHSKQL+H FR
Sbjct: 596 KFVASQFRRLHSKQLRHTFR 615
Acts as cyclic nucleotide-gated ion channel. Can be activated by cyclic AMP which leads to an opening of the cation channel. May be responsible for cAMP-induced calcium entry in cells and thus should be involved in the calcium signal transduction. Could transport K(+), Na(+) and Pb(2+).
Arabidopsis thaliana (taxid: 3702)
>sp|Q9LD40|CNG13_ARATH Putative cyclic nucleotide-gated ion channel 13 OS=Arabidopsis thaliana GN=CNGC13 PE=3 SV=2 Back     alignment and function description
>sp|Q9LNJ0|CNG10_ARATH Probable cyclic nucleotide-gated ion channel 10 OS=Arabidopsis thaliana GN=CNGC10 PE=2 SV=2 Back     alignment and function description
>sp|Q9SKD7|CNGC3_ARATH Probable cyclic nucleotide-gated ion channel 3 OS=Arabidopsis thaliana GN=CNGC3 PE=2 SV=2 Back     alignment and function description
>sp|O82226|CNGC6_ARATH Probable cyclic nucleotide-gated ion channel 6 OS=Arabidopsis thaliana GN=CNGC6 PE=1 SV=2 Back     alignment and function description
>sp|Q9M0A4|CNGC9_ARATH Putative cyclic nucleotide-gated ion channel 9 OS=Arabidopsis thaliana GN=CNGC9 PE=1 SV=1 Back     alignment and function description
>sp|Q8RWS9|CNGC5_ARATH Probable cyclic nucleotide-gated ion channel 5 OS=Arabidopsis thaliana GN=CNGC5 PE=2 SV=1 Back     alignment and function description
>sp|Q9FXH6|CNGC8_ARATH Putative cyclic nucleotide-gated ion channel 8 OS=Arabidopsis thaliana GN=CNGC8 PE=3 SV=2 Back     alignment and function description
>sp|Q9S9N5|CNGC7_ARATH Putative cyclic nucleotide-gated ion channel 7 OS=Arabidopsis thaliana GN=CNGC7 PE=2 SV=1 Back     alignment and function description
>sp|Q9SJA4|CNG14_ARATH Probable cyclic nucleotide-gated ion channel 14 OS=Arabidopsis thaliana GN=CNGC14 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query628
224064230717 predicted protein [Populus trichocarpa] 0.966 0.846 0.714 0.0
297810063697 ATCNGC13 [Arabidopsis lyrata subsp. lyra 0.947 0.853 0.683 0.0
255545024 838 Cyclic nucleotide-gated ion channel, put 0.974 0.730 0.689 0.0
224127923670 predicted protein [Populus trichocarpa] 0.904 0.847 0.716 0.0
297796139716 hypothetical protein ARALYDRAFT_918383 [ 0.977 0.857 0.673 0.0
15238657716 cyclic nucleotide-gated ion channel 1 [A 0.979 0.858 0.669 0.0
22328204696 cyclic nucleotide-gated channel 13 [Arab 0.944 0.852 0.684 0.0
7484881698 cyclic nucleotide gated channel homolog 0.923 0.830 0.698 0.0
224135235708 predicted protein [Populus trichocarpa] 0.966 0.857 0.681 0.0
356509281715 PREDICTED: cyclic nucleotide-gated ion c 0.971 0.853 0.672 0.0
>gi|224064230|ref|XP_002301407.1| predicted protein [Populus trichocarpa] gi|222843133|gb|EEE80680.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  911 bits (2354), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 444/621 (71%), Positives = 517/621 (83%), Gaps = 14/621 (2%)

Query: 13  DWNSENSYS-EQKPSNDDGFYPRVMRPTLSAVMDSIRRGYEMGSERIKSWKKPLSFRSHV 71
           DW SE S+S EQ  S +DGFY R ++PT +AV D+IRRG+EMGSERI+S KKPL F    
Sbjct: 2   DWRSEKSFSSEQGCSIEDGFYARKVKPTFNAVWDNIRRGWEMGSERIRSLKKPLRFYPRG 61

Query: 72  MQSEKKSVSEKRILDPQGPFLQWWNKIFVLSCVIALSIDPLFFYMPVIDG--KRKCLGLD 129
            +S K+   +K+ILDPQG FLQ WNKIF+L CV+A++IDPLFFY+P ++G  K KCL LD
Sbjct: 62  ARSVKEQGPKKKILDPQGSFLQNWNKIFMLVCVLAVAIDPLFFYIPWVNGTDKDKCLDLD 121

Query: 130 KTLEITACVLRSFIDTFYILRIIFQFRTGFIARSSRVFGRGELVDDPKAIAKRYLMSYFI 189
             +E  ACVLR+FID  YILRI FQFRTGFIA SSRVFGRGELV+DPK IAK+YL S+FI
Sbjct: 122 HKMEAAACVLRTFIDVVYILRIAFQFRTGFIAPSSRVFGRGELVEDPKVIAKKYLTSHFI 181

Query: 190 VDILAILPLPQLVVLIIVPAVKGPVPLVAKEMLKTIIFCQYVPRIARIYPLYNDVKRTSG 249
           VDILAILPLPQ+VV+II+P+V GPV L AK +L+ +IF QY+PR  RIYPL+ ++ RTSG
Sbjct: 182 VDILAILPLPQVVVIIILPSVDGPVSLAAKNLLEIVIFSQYIPRFVRIYPLFKEITRTSG 241

Query: 250 ILTETAWAGAALNLFLYMLASH------IFGACWYLYSIERQDSCWRDVCRKLNDTSNC- 302
           ILTETAWAGA  NLFLYMLASH      I GA WYL+SIER+DSCWR+VC+   D + C 
Sbjct: 242 ILTETAWAGAVFNLFLYMLASHKNVICQIIGAFWYLFSIEREDSCWREVCK---DRAGCD 298

Query: 303 TTNLYCGEFHGSNNTLLHGSCPFISPDEIKNSSMFNFGISIDALQSRVVEEHDFPKKFFY 362
           +T  YCG     N T L  SCPFI PD+I+NSS+FNFGI IDAL S VVE   FP+KFFY
Sbjct: 299 STYWYCGNHRPENYTFLTESCPFIQPDQIQNSSVFNFGIFIDALDSGVVESTYFPRKFFY 358

Query: 363 CFWWGLRNLSSLGQNLKTSTFVGEVFFAIFISISGLVLFALLIGNMQKYLESTTVRLEEM 422
           CFWWGLRNLSSLGQNLKTSTF+GE+ FAIFISI+GLVLFALLIGNMQKYLESTTVR+EEM
Sbjct: 359 CFWWGLRNLSSLGQNLKTSTFIGEILFAIFISITGLVLFALLIGNMQKYLESTTVRIEEM 418

Query: 423 RVKRQDAEQWMSHRMLPENLRDRIRRYEQYKWQETRGVEEEGLLRNLPKDLRRDIKRHLC 482
           RVKR+D+EQWMSHRMLP+NL++RIRR+EQYKWQETRGVEE GL+RNLPKDLRRDI RHLC
Sbjct: 419 RVKRRDSEQWMSHRMLPDNLKERIRRHEQYKWQETRGVEERGLIRNLPKDLRRDINRHLC 478

Query: 483 WDLLMRVPMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTY 542
            DL+ +VP+FEKMD+ +LDA+CD LK  LYT+ S+IVREGDPV+EMLF+MRG L+S TT 
Sbjct: 479 LDLIKKVPIFEKMDEHILDAVCDRLKATLYTKDSYIVREGDPVDEMLFIMRGTLLSVTTN 538

Query: 543 GGRTGFFNAVYLKAGDFCGEALLTWALDPQSSSNRPLSTRTVQALTEVEAFSLMADDLKS 602
           GGRTGFFNAV LKAGDFCGE LLTWALDPQ SSN P+STRTVQAL+EVEAF+L A+DLK+
Sbjct: 539 GGRTGFFNAVSLKAGDFCGEGLLTWALDPQ-SSNLPISTRTVQALSEVEAFALEAEDLKT 597

Query: 603 VASQFRRLHSKQLQHAFRQVF 623
           VASQFRRLH K +QH FRQVF
Sbjct: 598 VASQFRRLHHKDIQHTFRQVF 618

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|297810063|ref|XP_002872915.1| ATCNGC13 [Arabidopsis lyrata subsp. lyrata] gi|297318752|gb|EFH49174.1| ATCNGC13 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|255545024|ref|XP_002513573.1| Cyclic nucleotide-gated ion channel, putative [Ricinus communis] gi|223547481|gb|EEF48976.1| Cyclic nucleotide-gated ion channel, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224127923|ref|XP_002320197.1| predicted protein [Populus trichocarpa] gi|222860970|gb|EEE98512.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|297796139|ref|XP_002865954.1| hypothetical protein ARALYDRAFT_918383 [Arabidopsis lyrata subsp. lyrata] gi|297311789|gb|EFH42213.1| hypothetical protein ARALYDRAFT_918383 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|15238657|ref|NP_200125.1| cyclic nucleotide-gated ion channel 1 [Arabidopsis thaliana] gi|38502855|sp|O65717.1|CNGC1_ARATH RecName: Full=Cyclic nucleotide-gated ion channel 1; Short=AtCNGC1; AltName: Full=Cyclic nucleotide- and calmodulin-regulated ion channel 1 gi|13877753|gb|AAK43954.1|AF370139_1 putative cyclic nucleotide-regulated ion channel protein [Arabidopsis thaliana] gi|3096947|emb|CAA76178.1| putative cyclic nucleotide-regulated ion channel [Arabidopsis thaliana] gi|9757994|dbj|BAB08416.1| cyclic nucleotide-regulated ion channel [Arabidopsis thaliana] gi|24030485|gb|AAN41391.1| putative cyclic nucleotide-regulated ion channel protein [Arabidopsis thaliana] gi|332008928|gb|AED96311.1| cyclic nucleotide-gated ion channel 1 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|22328204|ref|NP_192010.2| cyclic nucleotide-gated channel 13 [Arabidopsis thaliana] gi|38503199|sp|Q9LD40.2|CNG13_ARATH RecName: Full=Putative cyclic nucleotide-gated ion channel 13; AltName: Full=Cyclic nucleotide- and calmodulin-regulated ion channel 13 gi|332656566|gb|AEE81966.1| cyclic nucleotide-gated channel 13 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|7484881|pir||T10541 cyclic nucleotide gated channel homolog F3I3.30 - Arabidopsis thaliana Back     alignment and taxonomy information
>gi|224135235|ref|XP_002322017.1| predicted protein [Populus trichocarpa] gi|222869013|gb|EEF06144.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356509281|ref|XP_003523379.1| PREDICTED: cyclic nucleotide-gated ion channel 1-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query628
TAIR|locus:2163776716 CNGC1 "cyclic nucleotide gated 0.974 0.854 0.648 1.2e-216
TAIR|locus:2125206696 CNGC13 "cyclic nucleotide-gate 0.923 0.833 0.674 2.9e-213
TAIR|locus:2039084706 CNGC3 "cyclic nucleotide gated 0.958 0.852 0.637 1.3e-210
TAIR|locus:2061401747 CNGC6 "cyclic nucleotide-gated 0.974 0.819 0.530 4.1e-175
TAIR|locus:2118836733 CNGC9 "cyclic nucleotide gated 0.971 0.832 0.532 1.3e-173
TAIR|locus:2174448717 CNGC5 "cyclic nucleotide gated 0.977 0.856 0.529 1.1e-172
TAIR|locus:2013139 753 CNGC8 "cyclic nucleotide gated 0.977 0.815 0.535 3.8e-172
TAIR|locus:2200502738 CNGC7 "cyclic nucleotide gated 0.977 0.831 0.523 2.5e-168
TAIR|locus:2039099621 CNGC11 "cyclic nucleotide-gate 0.834 0.843 0.563 3e-157
TAIR|locus:2046703 726 CNGC14 "cyclic nucleotide-gate 0.867 0.750 0.526 1.4e-151
TAIR|locus:2163776 CNGC1 "cyclic nucleotide gated channel 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2093 (741.8 bits), Expect = 1.2e-216, P = 1.2e-216
 Identities = 404/623 (64%), Positives = 482/623 (77%)

Query:     1 MNTERVKFVRFDDWNSENSYSEQKPSNDDGFYPRVMRPTLSAVMDSIRRGYEMGSERIKS 60
             MN  + KFVRF DW S+ + S+ + S  +     + + T+S++ D   R +E  S RIK 
Sbjct:     1 MNFRQEKFVRFQDWKSDKTSSDVEYSGKNEIQTGIFQRTISSISDKFYRSFESSSARIKL 60

Query:    61 WKKPLSFRSHVM-QSEKKSV-SEKRILDPQGPFLQWWNKIFVLSCVIALSIDPLFFYMPV 118
             +K+  S++S+   ++  K + S  +ILDPQGPFLQ WNKIFVL+C+IA+S+DPLFFY+P+
Sbjct:    61 FKR--SYKSYSFKEAVSKGIGSTHKILDPQGPFLQRWNKIFVLACIIAVSLDPLFFYVPI 118

Query:   119 IDGKRKCLGLDKTLEITACVLRSFIDTFYILRIIFQFRTGFIARSSRVFGRGELVDDPKA 178
             ID  +KCLG+DK +EITA VLRSF D FY+L IIFQFRTGFIA SSRVFGRG LV+D + 
Sbjct:   119 IDDAKKCLGIDKKMEITASVLRSFTDVFYVLHIIFQFRTGFIAPSSRVFGRGVLVEDKRE 178

Query:   179 IAKRYLMSYFIVDXXXXXXXXXXXXXXXXXXXKGPVPLVAKEMLKTIIFCQYVPRIARIY 238
             IAKRYL S+FI+D                   +G   L  K MLK I+F QY+PR  RIY
Sbjct:   179 IAKRYLSSHFIIDILAVLPLPQMVILIIIPHMRGSSSLNTKNMLKFIVFFQYIPRFIRIY 238

Query:   239 PLYNDVKRTSGILTETAWAGAALNLFLYMLASHIFGACWYLYSIERQDSCWRDVCRKLND 298
             PLY +V RTSGILTETAWAGAA NLFLYMLASH+FGA WYL+SIER+  CW+  C + N 
Sbjct:   239 PLYKEVTRTSGILTETAWAGAAFNLFLYMLASHVFGAFWYLFSIERETVCWKQACERNNP 298

Query:   299 TSNCTTNL-YCGEFHGSNNTLLHGSCPFISPDEIKNSSMFNFGISIDALQSRVVEEHDFP 357
                C + L YC       N  L+ SCP  +P    N+++F+FGI +DALQS VVE  DFP
Sbjct:   299 P--CISKLLYCDPETAGGNAFLNESCPIQTP----NTTLFDFGIFLDALQSGVVESQDFP 352

Query:   358 KKFFYCFWWGLRNLSSLGQNLKTSTFVGEVFFAIFISISGLVLFALLIGNMQKYLESTTV 417
             +KFFYCFWWGL+NLSSLGQNLKTST++ E+ FA+FISI+GLVLF+ LIGNMQ YL+STT 
Sbjct:   353 QKFFYCFWWGLQNLSSLGQNLKTSTYIWEICFAVFISIAGLVLFSFLIGNMQTYLQSTTT 412

Query:   418 RLEEMRVKRQDAEQWMSHRMLPENLRDRIRRYEQYKWQETRGVEEEGLLRNLPKDLRRDI 477
             RLEEMRVKR+DAEQWMSHR+LPENLR RIRRYEQYKWQETRGV+EE LL NLPKDLRRDI
Sbjct:   413 RLEEMRVKRRDAEQWMSHRLLPENLRKRIRRYEQYKWQETRGVDEENLLSNLPKDLRRDI 472

Query:   478 KRHLCWDLLMRVPMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLV 537
             KRHLC  LLMRVPMFEKMD+QLLDA+CD L+PVLYTE+S+IVREGDPV+EMLF+MRG L+
Sbjct:   473 KRHLCLALLMRVPMFEKMDEQLLDALCDRLQPVLYTEESYIVREGDPVDEMLFIMRGKLL 532

Query:   538 STTTYGGRTGFFNAVYLKAGDFCGEALLTWALDPQSSSNRPLSTRTVQALTEVEAFSLMA 597
             + TT GGRTGF N+ YL AGDFCGE LLTWALDP SSSN P+STRTV+AL EVEAF+L A
Sbjct:   533 TITTNGGRTGFLNSEYLGAGDFCGEELLTWALDPHSSSNLPISTRTVRALMEVEAFALKA 592

Query:   598 DDLKSVASQFRRLHSKQLQHAFR 620
             DDLK VASQFRRLHSKQL+H FR
Sbjct:   593 DDLKFVASQFRRLHSKQLRHTFR 615
GO:0005216 "ion channel activity" evidence=IEA
GO:0005261 "cation channel activity" evidence=ISS
GO:0005516 "calmodulin binding" evidence=ISS;TAS;IPI
GO:0005886 "plasma membrane" evidence=ISM;IDA
GO:0006811 "ion transport" evidence=IEA
GO:0016020 "membrane" evidence=IEA
GO:0030551 "cyclic nucleotide binding" evidence=ISS
GO:0055085 "transmembrane transport" evidence=IEA
GO:0005242 "inward rectifier potassium channel activity" evidence=IGI
GO:0005221 "intracellular cyclic nucleotide activated cation channel activity" evidence=IGI
GO:0006813 "potassium ion transport" evidence=IGI
GO:0006816 "calcium ion transport" evidence=IGI
TAIR|locus:2125206 CNGC13 "cyclic nucleotide-gated channel 13" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2039084 CNGC3 "cyclic nucleotide gated channel 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2061401 CNGC6 "cyclic nucleotide-gated channel 6" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2118836 CNGC9 "cyclic nucleotide gated channel 9" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2174448 CNGC5 "cyclic nucleotide gated channel 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2013139 CNGC8 "cyclic nucleotide gated channel 8" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2200502 CNGC7 "cyclic nucleotide gated channel 7" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2039099 CNGC11 "cyclic nucleotide-gated channels" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2046703 CNGC14 "cyclic nucleotide-gated channel 14" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
O65717CNGC1_ARATHNo assigned EC number0.66930.97920.8589yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
eugene3.00021581
hypothetical protein (717 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query628
cd00038115 cd00038, CAP_ED, effector domain of the CAP family 7e-17
smart00100120 smart00100, cNMP, Cyclic nucleotide-monophosphate 5e-12
pfam00520194 pfam00520, Ion_trans, Ion transport protein 5e-07
pfam0002791 pfam00027, cNMP_binding, Cyclic nucleotide-binding 6e-07
PLN03192 823 PLN03192, PLN03192, Voltage-dependent potassium ch 3e-06
COG0664214 COG0664, Crp, cAMP-binding proteins - catabolite g 2e-05
PLN03192 823 PLN03192, PLN03192, Voltage-dependent potassium ch 4e-05
>gnl|CDD|237999 cd00038, CAP_ED, effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor Back     alignment and domain information 
 Score = 76.6 bits (189), Expect = 7e-17
 Identities = 36/131 (27%), Positives = 56/131 (42%), Gaps = 19/131 (14%)

Query: 491 MFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNL-VSTTTYGGRTGFF 549
           +F  +DD+ L+ + D L+   +     I+R+GDP + +  V+ G++ V      GR    
Sbjct: 1   LFSGLDDEELEELADALEERRFPAGEVIIRQGDPADSLYIVLSGSVEVYKLDEDGREQIV 60

Query: 550 NAVYLKAGDFCGEALLTWALDPQSSSNRPLSTRTVQALTEVEAFSLMADDLKSVASQFRR 609
              +L  GD  GE  L               + TV+ALT+ E   L   D       FRR
Sbjct: 61  G--FLGPGDLFGELALL---------GNGPRSATVRALTDSELLVLPRSD-------FRR 102

Query: 610 LHSKQLQHAFR 620
           L  +  + A R
Sbjct: 103 LLQEYPELARR 113

In all cases binding of the effector leads to conformational changes and the ability to activate transcription. Cyclic nucleotide-binding domain similar to CAP are also present in cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) and vertebrate cyclic nucleotide-gated ion-channels. Cyclic nucleotide-monophosphate binding domain; proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues; the best studied is the prokaryotic catabolite gene activator, CAP, where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure; three conserved glycine residues are thought to be essential for maintenance of the structural integrity of the beta-barrel; CooA is a homodimeric transcription factor that belongs to CAP family; cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) contain two tandem copies of the cyclic nucleotide-binding domain; cAPK's are composed of two different subunits, a catalytic chain and a regulatory chain, which contains both copies of the domain; cGPK's are single chain enzymes that include the two copies of the domain in their N-terminal section; also found in vertebrate cyclic nucleotide-gated ion-channels. Length = 115
>gnl|CDD|197516 smart00100, cNMP, Cyclic nucleotide-monophosphate binding domain Back     alignment and domain information
>gnl|CDD|215968 pfam00520, Ion_trans, Ion transport protein Back     alignment and domain information
>gnl|CDD|215664 pfam00027, cNMP_binding, Cyclic nucleotide-binding domain Back     alignment and domain information
>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel; Provisional Back     alignment and domain information
>gnl|CDD|223736 COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms] Back     alignment and domain information
>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 628
KOG0498 727 consensus K+-channel ERG and related proteins, con 100.0
PLN03192 823 Voltage-dependent potassium channel; Provisional 100.0
KOG0500536 consensus Cyclic nucleotide-gated cation channel C 100.0
KOG0501 971 consensus K+-channel KCNQ [Inorganic ion transport 100.0
KOG0499 815 consensus Cyclic nucleotide-gated cation channel C 100.0
KOG3713477 consensus Voltage-gated K+ channel KCNB/KCNC [Inor 99.57
PRK09392236 ftrB transcriptional activator FtrB; Provisional 99.53
PRK11753211 DNA-binding transcriptional dual regulator Crp; Pr 99.44
cd00038115 CAP_ED effector domain of the CAP family of transc 99.4
PF00520200 Ion_trans: Ion transport protein calcium channel s 99.39
PF0002791 cNMP_binding: Cyclic nucleotide-binding domain; In 99.35
smart00100120 cNMP Cyclic nucleotide-monophosphate binding domai 99.35
PRK10402226 DNA-binding transcriptional activator YeiL; Provis 99.31
KOG1419 654 consensus Voltage-gated K+ channel KCNQ [Inorganic 99.3
PRK11161235 fumarate/nitrate reduction transcriptional regulat 99.29
COG0664214 Crp cAMP-binding proteins - catabolite gene activa 99.29
KOG0614 732 consensus cGMP-dependent protein kinase [Signal tr 99.26
KOG0614 732 consensus cGMP-dependent protein kinase [Signal tr 99.25
PLN02868 413 acyl-CoA thioesterase family protein 99.18
KOG1545507 consensus Voltage-gated shaker-like K+ channel KCN 99.18
KOG1113 368 consensus cAMP-dependent protein kinase types I an 99.15
COG2905 610 Predicted signal-transduction protein containing c 99.14
PRK09391230 fixK transcriptional regulator FixK; Provisional 99.11
TIGR03697193 NtcA_cyano global nitrogen regulator NtcA, cyanoba 99.06
PRK13918202 CRP/FNR family transcriptional regulator; Provisio 98.99
PF0788579 Ion_trans_2: Ion channel; InterPro: IPR013099 This 98.96
KOG1113368 consensus cAMP-dependent protein kinase types I an 98.93
KOG4390632 consensus Voltage-gated A-type K+ channel KCND [In 98.86
KOG1420 1103 consensus Ca2+-activated K+ channel Slowpoke, alph 98.56
KOG2968 1158 consensus Predicted esterase of the alpha-beta hyd 98.08
PF0841277 Ion_trans_N: Ion transport protein N-terminal; Int 98.08
PRK10537393 voltage-gated potassium channel; Provisional 97.92
KOG3684489 consensus Ca2+-activated K+ channel proteins (inte 97.92
PF01007336 IRK: Inward rectifier potassium channel; InterPro: 97.75
KOG2968 1158 consensus Predicted esterase of the alpha-beta hyd 97.6
KOG1418433 consensus Tandem pore domain K+ channel [Inorganic 97.4
PF04831153 Popeye: Popeye protein conserved region; InterPro: 97.12
PRK11832207 putative DNA-binding transcriptional regulator; Pr 96.72
KOG3542 1283 consensus cAMP-regulated guanine nucleotide exchan 96.53
KOG2302 1956 consensus T-type voltage-gated Ca2+ channel, pore- 96.38
KOG4404350 consensus Tandem pore domain K+ channel TASK3/THIK 95.17
KOG3827400 consensus Inward rectifier K+ channel [Inorganic i 94.79
KOG4404350 consensus Tandem pore domain K+ channel TASK3/THIK 94.71
KOG3193 1087 consensus K+ channel subunit [Inorganic ion transp 94.57
PLN032231634 Polycystin cation channel protein; Provisional 94.27
KOG1418433 consensus Tandem pore domain K+ channel [Inorganic 91.34
KOG3542 1283 consensus cAMP-regulated guanine nucleotide exchan 90.29
COG4709195 Predicted membrane protein [Function unknown] 84.61
KOG2301 1592 consensus Voltage-gated Ca2+ channels, alpha1 subu 81.02
PF08006181 DUF1700: Protein of unknown function (DUF1700); In 80.34
>KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information 
Probab=100.00  E-value=3.2e-105  Score=881.45  Aligned_cols=483  Identities=53%  Similarity=0.898  Sum_probs=441.3

Q ss_pred             ccceeCCCChhHHHHHHHHHHHHHHHHhhhhhccccceecCCccccccCccchhhhhHHHHHHHHHHHHHHHhhheeeee
Q 006857           81 EKRILDPQGPFLQWWNKIFVLSCVIALSIDPLFFYMPVIDGKRKCLGLDKTLEITACVLRSFIDTFYILRIIFQFRTGFI  160 (628)
Q Consensus        81 ~~~ii~P~s~~~~~W~~~~~~~~~~~~~~~P~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~d~~f~iDi~l~f~t~y~  160 (628)
                      .++||+|+|++++.||++++++|+|+++++|++++|+..++...|  +|..+...++++|+++|+||++||++||||||+
T Consensus        66 ~~~Ii~P~s~~~~~W~~~~Ll~~iya~~v~P~~f~f~~~~~~~~~--~d~~~~~~l~v~d~ivD~fflvdIvL~Frtayv  143 (727)
T KOG0498|consen   66 RKWILDPYSPFYRVWNKFFLLLVIYAAFVDPLFFYFLLIDDERKC--IDGKLAAPLTVLDTIVDIFFLVDIVLNFRTAYV  143 (727)
T ss_pred             cceeECCCChHHHHHHHHHHHHHHHHHHhccceeeEEeccccccc--ccccccCceeeHHHHHHHHHHHHHHHhheEEEE
Confidence            378999999999999999999999999999999999999999999  788899999999999999999999999999999


Q ss_pred             ecCccccCCCeeecCHHHHHHHhhhhhhHHHHHhhcchhHHHHhhhccCCCCChhhhh-hhhhHHHHHHhhhhHHHhhhc
Q 006857          161 ARSSRVFGRGELVDDPKAIAKRYLMSYFIVDILAILPLPQLVVLIIVPAVKGPVPLVA-KEMLKTIIFCQYVPRIARIYP  239 (628)
Q Consensus       161 ~~~~~~~~~G~lV~d~~~Ia~~Yl~~~F~iDlls~lP~~~i~~~~~~~~~~~~~~~~~-~~~lr~~~~~q~l~Rl~ri~~  239 (628)
                      +++|+     ++|.||++||+|||++||++|++|++|+|++++|.++    ++..... ...|..+..+||+|||.|++|
T Consensus       144 ~~~s~-----elV~dpk~IA~rYl~twFiiDlis~lP~~~i~~~~~~----~~~~~~~~~~~l~~il~~~rL~Rl~Rv~~  214 (727)
T KOG0498|consen  144 DPSSY-----ELVDDPKKIAKRYLKTWFLIDLISTLPFDQIVVLVVI----GSTSLALESTILVGILLLQRLPRLRRVIP  214 (727)
T ss_pred             CCCCc-----eeeeCHHHHHHHHHhhhHHHHHHHhcChhhheeeeee----cccchhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            99974     7999999999999999999999999999999998876    2222222 336777788899999999999


Q ss_pred             ccccccccccceehHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccchhHHHHhhhcCCCCCCccccccCCCCCCccccc
Q 006857          240 LYNDVKRTSGILTETAWAGAALNLFLYMLASHIFGACWYLYSIERQDSCWRDVCRKLNDTSNCTTNLYCGEFHGSNNTLL  319 (628)
Q Consensus       240 l~~~l~~~~~~~~~~~~~~~~~~ll~~~l~~H~~~c~wy~~~~~~~~~~w~~~~~~~~~~~~c~~~~~~~~~~~~~~~Wl  319 (628)
                      ++.++++..+++.+++|+++++++++|||++||+||+||++|.+++++||+++                        +|+
T Consensus       215 l~~r~~k~~~~v~~~awa~~a~ll~~~~l~sH~~gc~wYlia~~~~~~~~~~~------------------------tw~  270 (727)
T KOG0498|consen  215 LFARLEKDTGFVYETAWAGAALLLSVYLLASHWAGCIWYLIAIERPASCPRKA------------------------TWL  270 (727)
T ss_pred             HHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccc------------------------ccc
Confidence            99999999999999999999899999999999999999999999999999764                        333


Q ss_pred             cccCCCCCCcccccccccccchhHhhhhcccccCCCchhHHHHHHHHHHHHhhccCCCccccCchhhHHHHHHHHHHHHH
Q 006857          320 HGSCPFISPDEIKNSSMFNFGISIDALQSRVVEEHDFPKKFFYCFWWGLRNLSSLGQNLKTSTFVGEVFFAIFISISGLV  399 (628)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~giy~~~~~~~~~~~~~~~~~Y~~slyw~l~tlttvGygd~~~~~~~E~~~~i~~~i~G~~  399 (628)
                      ...+...++.+    ..|+||+|.++            .+|++|+|||++||||+|||+.+|+|..|++|+|++|++|++
T Consensus       271 ~~l~~~~~~~~----~~~~fg~~s~~------------~kY~~aLyw~l~tLstvG~g~~~s~~~~E~iFsi~~mi~Gll  334 (727)
T KOG0498|consen  271 GSLGRLLSCYN----LSFTFGIYSLA------------LKYVYALYWGLSTLSTVGYGLVHANNMGEKIFSIFIMLFGLL  334 (727)
T ss_pred             cccccccccCc----ccccccchhHH------------HHHHHHHHHHhhHhhhccCCccCCCCcHHHHHHHHHHHHhHH
Confidence            32110001111    33679877655            599999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCCHhHHHHHHHHHHHHHHhhcCCCHHHHhhcCChhHHHHHHH
Q 006857          400 LFALLIGNMQKYLESTTVRLEEMRVKRQDAEQWMSHRMLPENLRDRIRRYEQYKWQETRGVEEEGLLRNLPKDLRRDIKR  479 (628)
Q Consensus       400 lfa~lig~~~~~l~~~~~~~~~~~~~~~~~~~~m~~~~lp~~L~~rV~~y~~~~w~~~~~~~e~~ll~~Lp~~Lr~~i~~  479 (628)
                      +||++||||++++|+.+.|.++||.|++|+++||++|+||++||+||++|+||+|+.++|+||+++|++||++||++|++
T Consensus       335 L~A~lIGNmt~~iqs~tsR~~~~r~k~rd~e~~m~~~~LP~~LRqRi~~y~q~kw~~t~Gvdee~lL~~LP~~LR~dI~~  414 (727)
T KOG0498|consen  335 LFAYLIGNMTALLQSLTSRTEEMRDKMRDAEQWMSRRQLPPDLRQRIRRYEQYKWLATRGVDEEELLQSLPKDLRRDIKR  414 (727)
T ss_pred             HHHHHHhhHHHhHHHHhHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhccCcCHHHHHHhCCHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhHHHhhccccccCCcHHHHHHHHhccceEEeCCCCeEeccCCCcCeEEEEEeeEEEEEEecCCeeeEEEEEEecCCCe
Q 006857          480 HLCWDLLMRVPMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDF  559 (628)
Q Consensus       480 ~l~~~~l~~v~lF~~l~~~~l~~l~~~l~~~~~~~ge~I~~eGd~~~~lyfI~~G~V~v~~~~~g~~~~~~~~~l~~Gd~  559 (628)
                      |+|.++++++|+|+++|++++++||.++++..++|||+|++|||++++||||.+|.+++.+.++|.+  +++..|++||+
T Consensus       415 hL~~~lv~~vpLF~~md~~~L~al~~rlk~~~f~pge~iireGd~v~~myFI~rG~le~~~~~~g~~--~~~~~L~~Gd~  492 (727)
T KOG0498|consen  415 HLCLDLVRKVPLFAGMDDGLLDALCSRLKPEYFTPGEYIIREGDPVTDMYFIVRGSLESITTDGGGF--FVVAILGPGDF  492 (727)
T ss_pred             HHhHHHHhhCchhhcCCHHHHHHHHHHhhhhccCCCCeEEecCCccceeEEEEeeeEEEEEccCCce--EEEEEecCCCc
Confidence            9999999999999999999999999999999999999999999999999999999999999888743  45899999999


Q ss_pred             EehhhhhhhcCCCCCCCCCCcccEEEEcceEEEEEeeHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 006857          560 CGEALLTWALDPQSSSNRPLSTRTVQALTEVEAFSLMADDLKSVASQFRRLHSKQLQHAFRQVF  623 (628)
Q Consensus       560 fGe~~l~~~l~~~~~~~~~~r~~tv~A~t~~ell~L~~~~f~~ll~~~p~l~~~~l~~~~r~~~  623 (628)
                      |||+.++|+++.      | +++||+|+|.|+++.|++++|++++++||+++++++++++|..-
T Consensus       493 ~GeEl~~~~~~~------p-~t~TVralt~~el~~L~~~dL~~V~~~f~~~~~~~l~~~~r~~s  549 (727)
T KOG0498|consen  493 FGEELLTWCLDL------P-QTRTVRALTYCELFRLSADDLKEVLQQFRRLGSKFLQHTFRYYS  549 (727)
T ss_pred             cchHHHHHHhcC------C-CCceeehhhhhhHHhccHHHHHHHHHHhHHHHHHHHHhHHHHhh
Confidence            998877787741      1 37899999999999999999999999999999999998877543

>PLN03192 Voltage-dependent potassium channel; Provisional Back     alignment and domain information
>KOG0500 consensus Cyclic nucleotide-gated cation channel CNGA1-3 and related proteins [Inorganic ion transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information
>KOG0501 consensus K+-channel KCNQ [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG0499 consensus Cyclic nucleotide-gated cation channel CNCG4 [Inorganic ion transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information
>KOG3713 consensus Voltage-gated K+ channel KCNB/KCNC [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK09392 ftrB transcriptional activator FtrB; Provisional Back     alignment and domain information
>PRK11753 DNA-binding transcriptional dual regulator Crp; Provisional Back     alignment and domain information
>cd00038 CAP_ED effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor Back     alignment and domain information
>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins Back     alignment and domain information
>PF00027 cNMP_binding: Cyclic nucleotide-binding domain; InterPro: IPR000595 Proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues [, , ] Back     alignment and domain information
>smart00100 cNMP Cyclic nucleotide-monophosphate binding domain Back     alignment and domain information
>PRK10402 DNA-binding transcriptional activator YeiL; Provisional Back     alignment and domain information
>KOG1419 consensus Voltage-gated K+ channel KCNQ [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK11161 fumarate/nitrate reduction transcriptional regulator; Provisional Back     alignment and domain information
>COG0664 Crp cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms] Back     alignment and domain information
>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms] Back     alignment and domain information
>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms] Back     alignment and domain information
>PLN02868 acyl-CoA thioesterase family protein Back     alignment and domain information
>KOG1545 consensus Voltage-gated shaker-like K+ channel KCNA [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG1113 consensus cAMP-dependent protein kinase types I and II, regulatory subunit [Signal transduction mechanisms] Back     alignment and domain information
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms] Back     alignment and domain information
>PRK09391 fixK transcriptional regulator FixK; Provisional Back     alignment and domain information
>TIGR03697 NtcA_cyano global nitrogen regulator NtcA, cyanobacterial Back     alignment and domain information
>PRK13918 CRP/FNR family transcriptional regulator; Provisional Back     alignment and domain information
>PF07885 Ion_trans_2: Ion channel; InterPro: IPR013099 This entry includes the two membrane helix type ion channels found in bacteria [] Back     alignment and domain information
>KOG1113 consensus cAMP-dependent protein kinase types I and II, regulatory subunit [Signal transduction mechanisms] Back     alignment and domain information
>KOG4390 consensus Voltage-gated A-type K+ channel KCND [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG1420 consensus Ca2+-activated K+ channel Slowpoke, alpha subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information
>KOG2968 consensus Predicted esterase of the alpha-beta hydrolase superfamily (Neuropathy target esterase), contains cAMP-binding domains [General function prediction only] Back     alignment and domain information
>PF08412 Ion_trans_N: Ion transport protein N-terminal; InterPro: IPR013621 This domain is found to the N terminus of IPR005821 from INTERPRO in voltage- and cyclic nucleotide-gated K/Na ion channels Back     alignment and domain information
>PRK10537 voltage-gated potassium channel; Provisional Back     alignment and domain information
>KOG3684 consensus Ca2+-activated K+ channel proteins (intermediate/small conductance classes) [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF01007 IRK: Inward rectifier potassium channel; InterPro: IPR013521 Potassium channels are the most diverse group of the ion channel family [, ] Back     alignment and domain information
>KOG2968 consensus Predicted esterase of the alpha-beta hydrolase superfamily (Neuropathy target esterase), contains cAMP-binding domains [General function prediction only] Back     alignment and domain information
>KOG1418 consensus Tandem pore domain K+ channel [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF04831 Popeye: Popeye protein conserved region; InterPro: IPR006916 The Popeye (POP) family of proteins, is restricted to vertebrates and is preferentially expressed in developing and adult striated muscle Back     alignment and domain information
>PRK11832 putative DNA-binding transcriptional regulator; Provisional Back     alignment and domain information
>KOG3542 consensus cAMP-regulated guanine nucleotide exchange factor [Signal transduction mechanisms] Back     alignment and domain information
>KOG2302 consensus T-type voltage-gated Ca2+ channel, pore-forming alpha1I subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information
>KOG4404 consensus Tandem pore domain K+ channel TASK3/THIK-1 [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG3827 consensus Inward rectifier K+ channel [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG4404 consensus Tandem pore domain K+ channel TASK3/THIK-1 [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG3193 consensus K+ channel subunit [Inorganic ion transport and metabolism] Back     alignment and domain information
>PLN03223 Polycystin cation channel protein; Provisional Back     alignment and domain information
>KOG1418 consensus Tandem pore domain K+ channel [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG3542 consensus cAMP-regulated guanine nucleotide exchange factor [Signal transduction mechanisms] Back     alignment and domain information
>COG4709 Predicted membrane protein [Function unknown] Back     alignment and domain information
>KOG2301 consensus Voltage-gated Ca2+ channels, alpha1 subunits [Inorganic ion transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT) Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query628
1wgp_A137 Solution Structure Of The Cnmp-Binding Domain From 3e-47
3otf_A220 Structural Basis For The Camp-Dependent Gating In H 5e-12
3u10_A210 Tetramerization Dynamics Of The C-Terminus Underlie 5e-12
1q3e_A207 Hcn2j 443-645 In The Presence Of Cgmp Length = 207 5e-12
3ffq_A202 Hcn2i 443-640 Apo-State Length = 202 5e-12
2q0a_A200 Structure And Rearrangements In The Carboxy-Termina 7e-12
3bpz_A202 Hcn2-I 443-460 E502k In The Presence Of Camp Length 9e-12
4hbn_A205 Crystal Structure Of The Human Hcn4 Channel C-termi 2e-11
3etq_A204 X-Ray Structure Of Cysteine-Free Fragment Of Mhcn2 8e-11
3u11_A210 Tetramerization Dynamics Of The C-Terminus Underlie 1e-10
3u0z_A210 Tetramerization Dynamics Of The C-Terminus Underlie 2e-10
2ptm_A198 Structure And Rearrangements In The Carboxy-Termina 6e-10
1q43_A207 Hcn2i 443-640 In The Presence Of Camp, Selenomethio 9e-10
3ukn_A212 Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN 9e-08
3beh_A355 Structure Of A Bacterial Cyclic Nucleotide Regulate 7e-07
3clp_A140 M. Loti Cyclic-Nucleotide Binding Domain Mutant 2 L 8e-06
3co2_A140 Mlotik1 Ion Channel Cyclic-Nucleotide Binding Domai 9e-06
2k0g_A142 Solution Structure Of A Bacterial Cyclic Nucleotide 1e-05
3cl1_A140 M. Loti Cyclic-Nucleotide Binding Domain, Cyclic-Gm 1e-05
1u12_A138 M. Loti Cyclic Nucleotide Binding Domain Mutant Len 1e-05
1vp6_A138 M.Loti Ion Channel Cylic Nucleotide Binding Domain 1e-05
>pdb|1WGP|A Chain A, Solution Structure Of The Cnmp-Binding Domain From Arabidopsis Thaliana Cyclic Nucleotide-Regulated Ion Channel Length = 137 Back     alignment and structure 
Iteration: 1

 Score =  186 bits (472), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 87/122 (71%), Positives = 105/122 (86%)
Query: 488 RVPMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTYGGRTG 547
           RVP+FE MD++LLDA+C+ LKP L+TEKS++VREGDPV EMLF++RG L S TT GGR+G
Sbjct: 10  RVPLFENMDERLLDAICERLKPCLFTEKSYLVREGDPVNEMLFIIRGRLESVTTDGGRSG 69
Query: 548 FFNAVYLKAGDFCGEALLTWALDPQSSSNRPLSTRTVQALTEVEAFSLMADDLKSVASQF 607
           F+N   LK GDFCG+ LLTWALDP+S SN P STRTV+ALTEVEAF+L+AD+LK VASQF
Sbjct: 70  FYNRSLLKEGDFCGDELLTWALDPKSGSNLPSSTRTVKALTEVEAFALIADELKFVASQF 129
Query: 608 RR 609
           RR
Sbjct: 130 RR 131
>pdb|3OTF|A Chain A, Structural Basis For The Camp-Dependent Gating In Human Hcn4 Channel Length = 220 Back     alignment and structure
>pdb|3U10|A Chain A, Tetramerization Dynamics Of The C-Terminus Underlies Isoform-Specific Camp-Gating In Hcn Channels Length = 210 Back     alignment and structure
>pdb|1Q3E|A Chain A, Hcn2j 443-645 In The Presence Of Cgmp Length = 207 Back     alignment and structure
>pdb|3FFQ|A Chain A, Hcn2i 443-640 Apo-State Length = 202 Back     alignment and structure
>pdb|2Q0A|A Chain A, Structure And Rearrangements In The Carboxy-Terminal Region Of Spih Channels Length = 200 Back     alignment and structure
>pdb|3BPZ|A Chain A, Hcn2-I 443-460 E502k In The Presence Of Camp Length = 202 Back     alignment and structure
>pdb|4HBN|A Chain A, Crystal Structure Of The Human Hcn4 Channel C-terminus Carrying The S672r Mutation Length = 205 Back     alignment and structure
>pdb|3ETQ|A Chain A, X-Ray Structure Of Cysteine-Free Fragment Of Mhcn2 C- Terminal Region From Amino Acids 443-630 Including C508n, C584s, And C601s Mutations Length = 204 Back     alignment and structure
>pdb|3U11|A Chain A, Tetramerization Dynamics Of The C-Terminus Underlies Isoform-Specific Camp-Gating In Hcn Channels Length = 210 Back     alignment and structure
>pdb|3U0Z|A Chain A, Tetramerization Dynamics Of The C-Terminus Underlies Isoform-Specific Camp-Gating In Hcn Channels Length = 210 Back     alignment and structure
>pdb|2PTM|A Chain A, Structure And Rearrangements In The Carboxy-Terminal Region Of Spih Channels Length = 198 Back     alignment and structure
>pdb|1Q43|A Chain A, Hcn2i 443-640 In The Presence Of Camp, Selenomethionine Derivative Length = 207 Back     alignment and structure
>pdb|3UKN|A Chain A, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN C 2 2 21 SPACE Group Length = 212 Back     alignment and structure
>pdb|3BEH|A Chain A, Structure Of A Bacterial Cyclic Nucleotide Regulated Ion Channel Length = 355 Back     alignment and structure
>pdb|3CLP|A Chain A, M. Loti Cyclic-Nucleotide Binding Domain Mutant 2 Length = 140 Back     alignment and structure
>pdb|3CO2|A Chain A, Mlotik1 Ion Channel Cyclic-Nucleotide Binding Domain Mutant Length = 140 Back     alignment and structure
>pdb|2K0G|A Chain A, Solution Structure Of A Bacterial Cyclic Nucleotide- Activated K+ Channel Binding Domain In Complex With Camp Length = 142 Back     alignment and structure
>pdb|3CL1|A Chain A, M. Loti Cyclic-Nucleotide Binding Domain, Cyclic-Gmp Bound Length = 140 Back     alignment and structure
>pdb|1U12|A Chain A, M. Loti Cyclic Nucleotide Binding Domain Mutant Length = 138 Back     alignment and structure
>pdb|1VP6|A Chain A, M.Loti Ion Channel Cylic Nucleotide Binding Domain Length = 138 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query628
3ukn_A212 Novel protein similar to vertebrate potassium VOL 1e-69
2ptm_A198 Hyperpolarization-activated (IH) channel; ION chan 4e-67
3bpz_A202 Potassium/sodium hyperpolarization-activated cycli 6e-62
1wgp_A137 Probable cyclic nucleotide-gated ION channel 6; cy 5e-49
4f8a_A160 Potassium voltage-gated channel subfamily H membe; 3e-45
1vp6_A138 CNBD, cyclic-nucleotide binding domain of mesorhiz 1e-17
3gyd_A187 CNMP-BD protein, cyclic nucleotide-binding domain; 3e-15
2pqq_A149 Putative transcriptional regulator; APC7345, strep 3e-14
3mdp_A142 Cyclic nucleotide-binding domain (CNMP-BD) protei; 5e-14
2z69_A154 DNR protein; beta barrel, dimerization helix, tran 9e-14
3shr_A299 CGMP-dependent protein kinase 1; cyclic nucleotide 1e-13
3shr_A 299 CGMP-dependent protein kinase 1; cyclic nucleotide 1e-09
3d0s_A227 Transcriptional regulatory protein; CAMP receptor 1e-13
3kcc_A260 Catabolite gene activator; helix-turn-helix, CAMP, 5e-13
3e97_A231 Transcriptional regulator, CRP/FNR family; YP_6044 6e-13
4ev0_A216 Transcription regulator, CRP family; CAMP binding, 1e-12
4din_B381 CAMP-dependent protein kinase type I-beta regulat 1e-12
4din_B 381 CAMP-dependent protein kinase type I-beta regulat 5e-08
2qcs_B291 CAMP-dependent protein kinase type I-alpha regula 2e-12
2qcs_B 291 CAMP-dependent protein kinase type I-alpha regula 3e-07
3of1_A246 CAMP-dependent protein kinase regulatory subunit; 2e-12
3of1_A 246 CAMP-dependent protein kinase regulatory subunit; 5e-10
3dkw_A227 DNR protein; CRP-FNR, HTH, beta barrel, dimerizati 2e-12
3tnp_B416 CAMP-dependent protein kinase type II-beta regula 4e-12
3tnp_B 416 CAMP-dependent protein kinase type II-beta regula 1e-08
1zyb_A232 Transcription regulator, CRP family; NP_813211.1, 5e-12
3ryp_A210 Catabolite gene activator; CAMP receptor protein ( 2e-11
1o5l_A213 Transcriptional regulator, CRP family; TM1171, str 3e-11
2fmy_A220 COOA, carbon monoxide oxidation system transcripti 6e-11
1ft9_A222 Carbon monoxide oxidation system transcription reg 1e-10
3fx3_A237 Cyclic nucleotide-binding protein; helix_TURN_heli 2e-10
1o7f_A 469 CAMP-dependent RAP1 guanine-nucleotide exchange fa 3e-10
3e6c_C 250 CPRK, cyclic nucleotide-binding protein; CPRK, hal 4e-10
3iwz_A230 CAP-like, catabolite activation-like protein; XCC, 7e-10
2oz6_A207 Virulence factor regulator; winged helix, helix-tu 2e-09
3idb_B161 CAMP-dependent protein kinase type II-beta regulat 2e-09
2gau_A232 Transcriptional regulator, CRP/FNR family; structu 2e-09
3dv8_A220 Transcriptional regulator, CRP/FNR family; cyclic 3e-09
4ava_A 333 Lysine acetyltransferase; allosteric regulation, d 6e-09
3ocp_A139 PRKG1 protein; serine/threonine kinase, TF2I and I 1e-08
3pna_A154 CAMP-dependent protein kinase type I-alpha regula 2e-08
3la7_A243 Global nitrogen regulator; activator, DNA-binding, 4e-07
3beh_A355 MLL3241 protein; transmembrane protein, membrane p 7e-07
2d93_A134 RAP guanine nucleotide exchange factor 6; CNMP_bin 7e-07
2zcw_A202 TTHA1359, transcriptional regulator, FNR/CRP famil 1e-06
3b02_A195 Transcriptional regulator, CRP family; structural 9e-06
2bgc_A238 PRFA; bacterial infection, human pathogen, transcr 4e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-04
3eff_K139 Voltage-gated potassium channel; FULL length KCSA, 2e-04
3pjs_K166 KCSA, voltage-gated potassium channel; ION channel 9e-04
>3ukn_A Novel protein similar to vertebrate potassium VOL channel, subfamily H (EAG-related)...; KCNH, ELK, ERG, CNBD, CNBHD, C-linker, ION channel; 2.20A {Danio rerio} PDB: 3ukt_B 3ukv_B Length = 212 Back     alignment and structure
 Score =  223 bits (571), Expect = 1e-69
 Identities = 46/212 (21%), Positives = 85/212 (40%), Gaps = 17/212 (8%)

Query: 412 LESTTVRLEEMRVKRQDAEQWMSHRMLPENLRDRIRRYEQYKWQETRGVEEEGLLRNLPK 471
            +    R      + +D + ++    LP+ L  R+    Q  W    G++   LL++ P 
Sbjct: 4   DQRMYSRRSLYHTRTKDLKDFIRVHRLPKALAQRMLECFQTTWSVNNGIDVSELLKDFPD 63

Query: 472 DLRRDIKRHLCWDLLMRVPMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFV 531
           +LR DI  HL  +LL ++P+FE      L ++   +K        F++R+GD ++ + FV
Sbjct: 64  ELRADIAMHLNKELL-QLPLFESASRGCLRSLSLIIKTSFCAPGEFLIRQGDALQAIYFV 122

Query: 532 MRGNLVSTTTYGGRTGFFNAVYLKAGDFCGEALLTWALDPQSSSNRPLSTRTVQALTEVE 591
             G++                 L  GD  G   LT     +       +   V+ALT  +
Sbjct: 123 CSGSMEVLKDNTVLA------ILGKGDLIGSDSLTKEQVIK-------TNANVKALTYCD 169

Query: 592 AFSLMADDLKSVAS---QFRRLHSKQLQHAFR 620
              +    L+ V     ++ +    ++QH   
Sbjct: 170 LQYISLKGLREVLRLYPEYAQKFVSEIQHDLT 201
>2ptm_A Hyperpolarization-activated (IH) channel; ION channel, cyclic nucleotide binding domain, C-linker, CAM SPHCN1, HCN; HET: CMP; 1.93A {Strongylocentrotus purpuratus} Length = 198 Back     alignment and structure
>3bpz_A Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2; CNBD, C-linker, pacemaker, HCN, HCN2, CAP, PKA, CAMP, ION channel; HET: CMP; 1.65A {Mus musculus} PDB: 3ffq_A 1q3e_A* 1q43_A* 1q5o_A* 3u10_A* 2q0a_A* 3etq_A* 3u11_A* 3otf_A* 3u0z_A* Length = 202 Back     alignment and structure
>1wgp_A Probable cyclic nucleotide-gated ION channel 6; cyclic nucleotide monophosphate, CNMP, CNMP-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.82.3.2 Length = 137 Back     alignment and structure
>4f8a_A Potassium voltage-gated channel subfamily H membe; probable regulatory domain of potassium channel, membrane PR transport protein; 2.20A {Mus musculus} Length = 160 Back     alignment and structure
>1vp6_A CNBD, cyclic-nucleotide binding domain of mesorhizobium LOTI CNG potassium channel; dimer helical bundle beta barrel core with cyclic AMP bound; HET: CMP; 1.70A {Mesorhizobium loti} SCOP: b.82.3.2 PDB: 3cl1_A* 2k0g_A* 2kxl_A 3clp_A* 1u12_A 3co2_A Length = 138 Back     alignment and structure
>3gyd_A CNMP-BD protein, cyclic nucleotide-binding domain; nucleotide binding protein, structural genomics; HET: MSE CMP; 1.79A {Methylobacillus flagellatus KT} Length = 187 Back     alignment and structure
>2pqq_A Putative transcriptional regulator; APC7345, streptomyces coelicolor structural genomics, PSI-2, protein structure initiative; 2.00A {Streptomyces coelicolor A3} Length = 149 Back     alignment and structure
>3mdp_A Cyclic nucleotide-binding domain (CNMP-BD) protei; structural genomics, joint center for structural genomics; HET: MSE; 1.90A {Geobacter metallireducens} Length = 142 Back     alignment and structure
>2z69_A DNR protein; beta barrel, dimerization helix, transcription regulator; 2.10A {Pseudomonas aeruginosa} Length = 154 Back     alignment and structure
>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus} Length = 299 Back     alignment and structure
>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus} Length = 299 Back     alignment and structure
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A* Length = 227 Back     alignment and structure
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli} Length = 260 Back     alignment and structure
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300} Length = 231 Back     alignment and structure
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus} Length = 216 Back     alignment and structure
>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens} Length = 381 Back     alignment and structure
>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens} Length = 381 Back     alignment and structure
>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A* Length = 291 Back     alignment and structure
>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A* Length = 291 Back     alignment and structure
>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae} Length = 246 Back     alignment and structure
>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae} Length = 246 Back     alignment and structure
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa} Length = 227 Back     alignment and structure
>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B* Length = 416 Back     alignment and structure
>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B* Length = 416 Back     alignment and structure
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2 Length = 232 Back     alignment and structure
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ... Length = 210 Back     alignment and structure
>1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2 Length = 213 Back     alignment and structure
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A* Length = 220 Back     alignment and structure
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1 Length = 222 Back     alignment and structure
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A* Length = 237 Back     alignment and structure
>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2 Length = 469 Back     alignment and structure
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A Length = 250 Back     alignment and structure
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV} Length = 230 Back     alignment and structure
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2 Length = 207 Back     alignment and structure
>3idb_B CAMP-dependent protein kinase type II-beta regulatory subunit, CAMP-dependent protein kinase catalytic subunit alpha; PKA, SPR, affinity; HET: TPO SEP ANP; 1.62A {Rattus norvegicus} PDB: 3idc_B* Length = 161 Back     alignment and structure
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2 Length = 232 Back     alignment and structure
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656} Length = 220 Back     alignment and structure
>4ava_A Lysine acetyltransferase; allosteric regulation, domain coupling; HET: ACO; 1.70A {Mycobacterium tuberculosis} PDB: 4avb_A* 4avc_A* Length = 333 Back     alignment and structure
>3ocp_A PRKG1 protein; serine/threonine kinase, TF2I and IRAG, transferase; HET: CMP; 2.49A {Homo sapiens} PDB: 3od0_A* 3ogj_A* Length = 139 Back     alignment and structure
>3pna_A CAMP-dependent protein kinase type I-alpha regula subunit; beta-barrel, CAMP-binding, catalytic subunit, transferase; HET: CMP; 1.50A {Bos taurus} PDB: 3fhi_B* 3iia_A 3plq_A* 1u7e_B* 3pvb_B* Length = 154 Back     alignment and structure
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A* Length = 243 Back     alignment and structure
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A* Length = 355 Back     alignment and structure
>2d93_A RAP guanine nucleotide exchange factor 6; CNMP_binding domain, PDZ domain containing guanine nucleotide exchange factor 2, PDZ-GEF2, RA-GEF-2; NMR {Homo sapiens} Length = 134 Back     alignment and structure
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus} Length = 202 Back     alignment and structure
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A Length = 195 Back     alignment and structure
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A Length = 238 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans} Length = 139 Back     alignment and structure
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A Length = 166 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query628
3beh_A355 MLL3241 protein; transmembrane protein, membrane p 100.0
3ukn_A212 Novel protein similar to vertebrate potassium VOL 99.97
2ptm_A198 Hyperpolarization-activated (IH) channel; ION chan 99.97
3bpz_A202 Potassium/sodium hyperpolarization-activated cycli 99.97
1orq_C223 Potassium channel; voltage-dependent, KVAP, FAB co 99.87
4f8a_A160 Potassium voltage-gated channel subfamily H membe; 99.81
2r9r_B514 Paddle chimera voltage gated potassium channel KV; 99.77
3ocp_A139 PRKG1 protein; serine/threonine kinase, TF2I and I 99.73
3idb_B161 CAMP-dependent protein kinase type II-beta regulat 99.71
3mdp_A142 Cyclic nucleotide-binding domain (CNMP-BD) protei; 99.7
1wgp_A137 Probable cyclic nucleotide-gated ION channel 6; cy 99.69
3gyd_A187 CNMP-BD protein, cyclic nucleotide-binding domain; 99.69
2pqq_A149 Putative transcriptional regulator; APC7345, strep 99.68
2z69_A154 DNR protein; beta barrel, dimerization helix, tran 99.67
3dn7_A194 Cyclic nucleotide binding regulatory protein; stru 99.64
4ev0_A216 Transcription regulator, CRP family; CAMP binding, 99.64
3pna_A154 CAMP-dependent protein kinase type I-alpha regula 99.64
1vp6_A138 CNBD, cyclic-nucleotide binding domain of mesorhiz 99.63
3shr_A 299 CGMP-dependent protein kinase 1; cyclic nucleotide 99.63
3fx3_A237 Cyclic nucleotide-binding protein; helix_TURN_heli 99.63
3e97_A231 Transcriptional regulator, CRP/FNR family; YP_6044 99.62
3d0s_A227 Transcriptional regulatory protein; CAMP receptor 99.61
1zyb_A232 Transcription regulator, CRP family; NP_813211.1, 99.6
3iwz_A230 CAP-like, catabolite activation-like protein; XCC, 99.6
3dv8_A220 Transcriptional regulator, CRP/FNR family; cyclic 99.6
4ava_A 333 Lysine acetyltransferase; allosteric regulation, d 99.57
3dkw_A227 DNR protein; CRP-FNR, HTH, beta barrel, dimerizati 99.57
2gau_A232 Transcriptional regulator, CRP/FNR family; structu 99.57
2a9h_A155 Voltage-gated potassium channel; potassium channel 99.56
2d93_A134 RAP guanine nucleotide exchange factor 6; CNMP_bin 99.56
3shr_A299 CGMP-dependent protein kinase 1; cyclic nucleotide 99.55
3ryp_A210 Catabolite gene activator; CAMP receptor protein ( 99.55
2qcs_B 291 CAMP-dependent protein kinase type I-alpha regula 99.55
2qcs_B291 CAMP-dependent protein kinase type I-alpha regula 99.54
3of1_A246 CAMP-dependent protein kinase regulatory subunit; 99.54
2fmy_A220 COOA, carbon monoxide oxidation system transcripti 99.53
3tnp_B 416 CAMP-dependent protein kinase type II-beta regula 99.53
3of1_A 246 CAMP-dependent protein kinase regulatory subunit; 99.53
2oz6_A207 Virulence factor regulator; winged helix, helix-tu 99.51
3kcc_A260 Catabolite gene activator; helix-turn-helix, CAMP, 99.5
1ft9_A222 Carbon monoxide oxidation system transcription reg 99.49
4din_B 381 CAMP-dependent protein kinase type I-beta regulat 99.49
4din_B381 CAMP-dependent protein kinase type I-beta regulat 99.48
1o5l_A213 Transcriptional regulator, CRP family; TM1171, str 99.48
4h33_A137 LMO2059 protein; bilayers, KVLM, lipidic cubic pha 99.46
3tnp_B416 CAMP-dependent protein kinase type II-beta regula 99.45
3vou_A148 ION transport 2 domain protein, voltage-gated SOD 99.45
1o7f_A 469 CAMP-dependent RAP1 guanine-nucleotide exchange fa 99.44
2ih3_C122 Voltage-gated potassium channel; ION channel D-ami 99.43
1o7f_A469 CAMP-dependent RAP1 guanine-nucleotide exchange fa 99.42
3e6c_C 250 CPRK, cyclic nucleotide-binding protein; CPRK, hal 99.41
3la7_A243 Global nitrogen regulator; activator, DNA-binding, 99.34
2bgc_A 238 PRFA; bacterial infection, human pathogen, transcr 99.34
3eff_K139 Voltage-gated potassium channel; FULL length KCSA, 99.34
4f7z_A 999 RAP guanine nucleotide exchange factor 4; cyclic n 99.32
3cf6_E 694 RAP guanine nucleotide exchange factor (GEF) 4; EP 99.29
4f7z_A 999 RAP guanine nucleotide exchange factor 4; cyclic n 99.23
3rvy_A285 ION transport protein; tetrameric ION channel, vol 99.16
3b02_A195 Transcriptional regulator, CRP family; structural 99.13
2k1e_A103 Water soluble analogue of potassium channel, KCSA; 99.1
2q67_A114 Potassium channel protein; inverted teepee, helix 99.06
3ouf_A97 Potassium channel protein; ION channel, membrane, 99.05
2zcw_A202 TTHA1359, transcriptional regulator, FNR/CRP famil 99.0
3ldc_A82 Calcium-gated potassium channel MTHK; transmembran 98.95
3pjs_K166 KCSA, voltage-gated potassium channel; ION channel 98.95
1xl4_A301 Inward rectifier potassium channel; integral membr 98.78
1p7b_A333 Integral membrane channel and cytosolic domains; t 98.74
3um7_A309 Potassium channel subfamily K member 4; potassium 98.72
2qks_A321 KIR3.1-prokaryotic KIR channel chimera; G-protein 98.61
3sya_A340 G protein-activated inward rectifier potassium CH; 98.47
4gx0_A 565 TRKA domain protein; membrane protein, ION channel 98.38
3ukm_A280 Potassium channel subfamily K member 1; membrane p 98.37
3um7_A309 Potassium channel subfamily K member 4; potassium 98.29
3ukm_A280 Potassium channel subfamily K member 1; membrane p 98.24
3spc_A343 Inward-rectifier K+ channel KIR2.2; PIP, membrane 98.22
4dxw_A229 Navrh, ION transport protein; tetrameric, voltage- 98.1
1lnq_A336 MTHK channels, potassium channel related protein; 98.06
2kyh_A147 KVAP, voltage-gated potassium channel; ION channel 97.46
1ors_C132 Potassium channel; voltage-dependent, voltage sens 97.27
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A* Back     alignment and structure
Probab=100.00  E-value=5.7e-34  Score=302.39  Aligned_cols=185  Identities=24%  Similarity=0.370  Sum_probs=55.7

Q ss_pred             hHHHHHHHHHHHHhhccCCCccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcC
Q 006857          358 KKFFYCFWWGLRNLSSLGQNLKTSTFVGEVFFAIFISISGLVLFALLIGNMQKYLESTTVRLEEMRVKRQDAEQWMSHRM  437 (628)
Q Consensus       358 ~~Y~~slyw~l~tlttvGygd~~~~~~~E~~~~i~~~i~G~~lfa~lig~~~~~l~~~~~~~~~~~~~~~~~~~~m~~~~  437 (628)
                      ..|..|+||+++||||+||||++|.+..|++++++++++|++++++++|.+.+.+++...+                   
T Consensus       160 ~~~~~s~y~~~~t~ttvGygd~~p~t~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~-------------------  220 (355)
T 3beh_A          160 GSIPQAMWWAVVTLSTTGYGDTIPQSFAGRVLAGAVMMSGIGIFGLWAGILATGFYQEVRR-------------------  220 (355)
T ss_dssp             SSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------
T ss_pred             ccHHHHHHHHHhheeecCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------
Confidence            4588999999999999999999999999999999999999999999999998877532110                   


Q ss_pred             CCHhHHHHHHHHHHHHHHhhcCCCHHHHhhcCChhHHHHHHHHHhHHHhhccccccCCcHHHHHHHHhccceEEeCCCCe
Q 006857          438 LPENLRDRIRRYEQYKWQETRGVEEEGLLRNLPKDLRRDIKRHLCWDLLMRVPMFEKMDDQLLDAMCDHLKPVLYTEKSF  517 (628)
Q Consensus       438 lp~~L~~rV~~y~~~~w~~~~~~~e~~ll~~Lp~~Lr~~i~~~l~~~~l~~v~lF~~l~~~~l~~l~~~l~~~~~~~ge~  517 (628)
                               +++.                              -+.+.++++|+|++++++.+++++..++.+.++|||.
T Consensus       221 ---------~~~~------------------------------~~~~~l~~~~lf~~ls~~~l~~l~~~~~~~~~~~ge~  261 (355)
T 3beh_A          221 ---------GDFV------------------------------RNWQLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAV  261 (355)
T ss_dssp             ---------HHHH------------------------------HHHC---------------------------------
T ss_pred             ---------Hhhc------------------------------ccchhhhcccccccCCHHHHHHHHHhceEEEECCCCE
Confidence                     0000                              0246788899999999999999999999999999999


Q ss_pred             EeccCCCcCeEEEEEeeEEEEEEecCCeeeEEEEEEecCCCeEehhhhhhhcCCCCCCCCCCcccEEEEcceEEEEEeeH
Q 006857          518 IVREGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFCGEALLTWALDPQSSSNRPLSTRTVQALTEVEAFSLMA  597 (628)
Q Consensus       518 I~~eGd~~~~lyfI~~G~V~v~~~~~g~~~~~~~~~l~~Gd~fGe~~l~~~l~~~~~~~~~~r~~tv~A~t~~ell~L~~  597 (628)
                      |++|||+++++|+|.+|.|+++..+   +     ..+++|++|||.+++.   +      .+++++++|.++|+++.+++
T Consensus       262 I~~~G~~~~~ly~I~~G~v~v~~~~---~-----~~l~~G~~fGe~~~l~---~------~~~~~~~~A~~~~~l~~i~~  324 (355)
T 3beh_A          262 ICRIGEPGDRMFFVVEGSVSVATPN---P-----VELGPGAFFGEMALIS---G------EPRSATVSAATTVSLLSLHS  324 (355)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             EEeCCCcCceEEEEEeeEEEEEECC---e-----eEECCCCEEeehHHhC---C------CCcceEEEECccEEEEEEeH
Confidence            9999999999999999999997654   1     4789999999998752   1      12578999999999999999


Q ss_pred             HHHHHHHHHhHHHHHHHHHH
Q 006857          598 DDLKSVASQFRRLHSKQLQH  617 (628)
Q Consensus       598 ~~f~~ll~~~p~l~~~~l~~  617 (628)
                      ++|.++++++|++.....+.
T Consensus       325 ~~f~~ll~~~p~~~~~l~~~  344 (355)
T 3beh_A          325 ADFQMLCSSSPEIAEIFRKT  344 (355)
T ss_dssp             --------------------
T ss_pred             HHHHHHHHHCHHHHHHHHHH
Confidence            99999999999987544443
>3ukn_A Novel protein similar to vertebrate potassium VOL channel, subfamily H (EAG-related)...; KCNH, ELK, ERG, CNBD, CNBHD, C-linker, ION channel; 2.20A {Danio rerio} PDB: 3ukt_B 3ukv_B Back     alignment and structure
>2ptm_A Hyperpolarization-activated (IH) channel; ION channel, cyclic nucleotide binding domain, C-linker, CAM SPHCN1, HCN; HET: CMP; 1.93A {Strongylocentrotus purpuratus} Back     alignment and structure
>3bpz_A Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2; CNBD, C-linker, pacemaker, HCN, HCN2, CAP, PKA, CAMP, ION channel; HET: CMP; 1.65A {Mus musculus} PDB: 3ffq_A 1q3e_A* 1q43_A* 1q5o_A* 3u10_A* 2q0a_A* 3etq_A* 3u11_A* 3otf_A* 3u0z_A* Back     alignment and structure
>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A Back     alignment and structure
>4f8a_A Potassium voltage-gated channel subfamily H membe; probable regulatory domain of potassium channel, membrane PR transport protein; 2.20A {Mus musculus} Back     alignment and structure
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B* Back     alignment and structure
>3ocp_A PRKG1 protein; serine/threonine kinase, TF2I and IRAG, transferase; HET: CMP; 2.49A {Homo sapiens} PDB: 3od0_A* 3ogj_A* Back     alignment and structure
>3idb_B CAMP-dependent protein kinase type II-beta regulatory subunit, CAMP-dependent protein kinase catalytic subunit alpha; PKA, SPR, affinity; HET: TPO SEP ANP; 1.62A {Rattus norvegicus} PDB: 3idc_B* Back     alignment and structure
>3mdp_A Cyclic nucleotide-binding domain (CNMP-BD) protei; structural genomics, joint center for structural genomics; HET: MSE; 1.90A {Geobacter metallireducens} Back     alignment and structure
>1wgp_A Probable cyclic nucleotide-gated ION channel 6; cyclic nucleotide monophosphate, CNMP, CNMP-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.82.3.2 Back     alignment and structure
>3gyd_A CNMP-BD protein, cyclic nucleotide-binding domain; nucleotide binding protein, structural genomics; HET: MSE CMP; 1.79A {Methylobacillus flagellatus KT} Back     alignment and structure
>2pqq_A Putative transcriptional regulator; APC7345, streptomyces coelicolor structural genomics, PSI-2, protein structure initiative; 2.00A {Streptomyces coelicolor A3} Back     alignment and structure
>2z69_A DNR protein; beta barrel, dimerization helix, transcription regulator; 2.10A {Pseudomonas aeruginosa} Back     alignment and structure
>3dn7_A Cyclic nucleotide binding regulatory protein; structural genomics, APC88869, cyclic nucleotide binding REG protein, PSI-2; 1.80A {Cytophaga hutchinsonii} Back     alignment and structure
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus} Back     alignment and structure
>3pna_A CAMP-dependent protein kinase type I-alpha regula subunit; beta-barrel, CAMP-binding, catalytic subunit, transferase; HET: CMP; 1.50A {Bos taurus} PDB: 3fhi_B* 3iia_A 3plq_A* 1u7e_B* 3pvb_B* Back     alignment and structure
>1vp6_A CNBD, cyclic-nucleotide binding domain of mesorhizobium LOTI CNG potassium channel; dimer helical bundle beta barrel core with cyclic AMP bound; HET: CMP; 1.70A {Mesorhizobium loti} SCOP: b.82.3.2 PDB: 3cl1_A* 2k0g_A* 2kxl_A 3clp_A* 1u12_A 3co2_A Back     alignment and structure
>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus} Back     alignment and structure
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A* Back     alignment and structure
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300} Back     alignment and structure
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A* Back     alignment and structure
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2 Back     alignment and structure
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV} Back     alignment and structure
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656} Back     alignment and structure
>4ava_A Lysine acetyltransferase; allosteric regulation, domain coupling; HET: ACO; 1.70A {Mycobacterium tuberculosis} PDB: 4avb_A* 4avc_A* Back     alignment and structure
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa} Back     alignment and structure
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2 Back     alignment and structure
>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1 Back     alignment and structure
>2d93_A RAP guanine nucleotide exchange factor 6; CNMP_binding domain, PDZ domain containing guanine nucleotide exchange factor 2, PDZ-GEF2, RA-GEF-2; NMR {Homo sapiens} Back     alignment and structure
>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus} Back     alignment and structure
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ... Back     alignment and structure
>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A* Back     alignment and structure
>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A* Back     alignment and structure
>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae} Back     alignment and structure
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A* Back     alignment and structure
>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B* Back     alignment and structure
>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae} Back     alignment and structure
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2 Back     alignment and structure
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli} Back     alignment and structure
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1 Back     alignment and structure
>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens} Back     alignment and structure
>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens} Back     alignment and structure
>1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2 Back     alignment and structure
>4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A Back     alignment and structure
>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B* Back     alignment and structure
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis} Back     alignment and structure
>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2 Back     alignment and structure
>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ... Back     alignment and structure
>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2 Back     alignment and structure
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A Back     alignment and structure
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A* Back     alignment and structure
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A Back     alignment and structure
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans} Back     alignment and structure
>4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E Back     alignment and structure
>3cf6_E RAP guanine nucleotide exchange factor (GEF) 4; EPAC, rapgef4, CAMP, SP-camps, GEF, gunanine nucleotide exchange factor, G-protein, GTP-binding, nucleotide-binding; HET: SP1; 2.20A {Mus musculus} Back     alignment and structure
>4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E Back     alignment and structure
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A* Back     alignment and structure
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A Back     alignment and structure
>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A Back     alignment and structure
>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A Back     alignment and structure
>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A Back     alignment and structure
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus} Back     alignment and structure
>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 4hyo_A 4hz3_D 3r65_A 3ous_A 3ldd_A Back     alignment and structure
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A Back     alignment and structure
>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A* Back     alignment and structure
>1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A* Back     alignment and structure
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens} Back     alignment and structure
>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans} Back     alignment and structure
>3sya_A G protein-activated inward rectifier potassium CH; ION channel, potassium channel, inward rectification, sodium PIP2 binding, G protein binding; HET: PIO; 2.98A {Mus musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A* Back     alignment and structure
>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A* Back     alignment and structure
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens} Back     alignment and structure
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens} Back     alignment and structure
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens} Back     alignment and structure
>3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid, receptor, metal transport; HET: P8P; 2.45A {Gallus gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A* Back     alignment and structure
>4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium channel, sodium selective, gated ION channel; HET: BNG PX4; 3.05A {Alpha proteobacterium HIMB114} Back     alignment and structure
>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A Back     alignment and structure
>2kyh_A KVAP, voltage-gated potassium channel; ION channel, membrane protein; NMR {Aeropyrum pernix} Back     alignment and structure
>1ors_C Potassium channel; voltage-dependent, voltage sensor, KVAP, FAB complex, membrane protein; 1.90A {Aeropyrum pernix} SCOP: f.14.1.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 628
d1wgpa_137 b.82.3.2 (A:) Probable cyclic nucleotide-gated ion 9e-24
d1q3ea_193 b.82.3.2 (A:) HCN pacemaker channel {Mouse (Mus mu 1e-14
d1ne6a2132 b.82.3.2 (A:245-376) Regulatory subunit of Protein 1e-10
d1cx4a2147 b.82.3.2 (A:266-412) Regulatory subunit of Protein 2e-09
d1vp6a_133 b.82.3.2 (A:) Putative ion channel CnbD {Mesorhizo 3e-09
d1o7fa2155 b.82.3.2 (A:13-167) Regulatory domain of Epac2, do 1e-08
d1cx4a1136 b.82.3.2 (A:130-265) Regulatory subunit of Protein 4e-08
d1ne6a1136 b.82.3.2 (A:109-244) Regulatory subunit of Protein 9e-08
d1i5za2132 b.82.3.2 (A:6-137) Catabolite gene activator prote 2e-06
d2gaua2142 b.82.3.2 (A:10-151) Transcriptional regulator PG03 3e-05
d1lnqa280 f.14.1.1 (A:19-98) Potassium channel-related prote 7e-05
d1o7fa3124 b.82.3.2 (A:322-445) Regulatory domain of Epac2, d 1e-04
d2oz6a2134 b.82.3.2 (A:9-142) Cyclic AMP receptor-like protei 2e-04
d1p7ba2116 f.14.1.1 (A:36-151) Inward rectifier potassium cha 5e-04
d1xl4a2116 f.14.1.1 (A:23-138) Inward rectifier potassium cha 0.001
d1zyba2147 b.82.3.2 (A:1-147) Probable transcription regulato 0.001
d1r3jc_103 f.14.1.1 (C:) Potassium channel protein {Streptomy 0.002
>d1wgpa_ b.82.3.2 (A:) Probable cyclic nucleotide-gated ion channel 6 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 137 Back     information, alignment and structure

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Probable cyclic nucleotide-gated ion channel 6
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 95.0 bits (235), Expect = 9e-24
 Identities = 87/128 (67%), Positives = 106/128 (82%)

Query: 484 DLLMRVPMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTYG 543
             + RVP+FE MD++LLDA+C+ LKP L+TEKS++VREGDPV EMLF++RG L S TT G
Sbjct: 6   SGVRRVPLFENMDERLLDAICERLKPCLFTEKSYLVREGDPVNEMLFIIRGRLESVTTDG 65

Query: 544 GRTGFFNAVYLKAGDFCGEALLTWALDPQSSSNRPLSTRTVQALTEVEAFSLMADDLKSV 603
           GR+GF+N   LK GDFCG+ LLTWALDP+S SN P STRTV+ALTEVEAF+L+AD+LK V
Sbjct: 66  GRSGFYNRSLLKEGDFCGDELLTWALDPKSGSNLPSSTRTVKALTEVEAFALIADELKFV 125

Query: 604 ASQFRRLH 611
           ASQFRR  
Sbjct: 126 ASQFRRSG 133
>d1q3ea_ b.82.3.2 (A:) HCN pacemaker channel {Mouse (Mus musculus) [TaxId: 10090]} Length = 193 Back     information, alignment and structure
>d1ne6a2 b.82.3.2 (A:245-376) Regulatory subunit of Protein kinase A {Cow (Bos taurus) [TaxId: 9913]} Length = 132 Back     information, alignment and structure
>d1cx4a2 b.82.3.2 (A:266-412) Regulatory subunit of Protein kinase A {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 147 Back     information, alignment and structure
>d1vp6a_ b.82.3.2 (A:) Putative ion channel CnbD {Mesorhizobium loti [TaxId: 381]} Length = 133 Back     information, alignment and structure
>d1o7fa2 b.82.3.2 (A:13-167) Regulatory domain of Epac2, domains 1 and 3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 155 Back     information, alignment and structure
>d1cx4a1 b.82.3.2 (A:130-265) Regulatory subunit of Protein kinase A {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 136 Back     information, alignment and structure
>d1ne6a1 b.82.3.2 (A:109-244) Regulatory subunit of Protein kinase A {Cow (Bos taurus) [TaxId: 9913]} Length = 136 Back     information, alignment and structure
>d1i5za2 b.82.3.2 (A:6-137) Catabolite gene activator protein, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 132 Back     information, alignment and structure
>d2gaua2 b.82.3.2 (A:10-151) Transcriptional regulator PG0396, N-terminal domain {Porphyromonas gingivalis [TaxId: 837]} Length = 142 Back     information, alignment and structure
>d1lnqa2 f.14.1.1 (A:19-98) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} Length = 80 Back     information, alignment and structure
>d1o7fa3 b.82.3.2 (A:322-445) Regulatory domain of Epac2, domains 1 and 3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 124 Back     information, alignment and structure
>d2oz6a2 b.82.3.2 (A:9-142) Cyclic AMP receptor-like protein Vfr {Pseudomonas aeruginosa [TaxId: 287]} Length = 134 Back     information, alignment and structure
>d1p7ba2 f.14.1.1 (A:36-151) Inward rectifier potassium channel Kirbac1.1 {Burkholderia pseudomallei [TaxId: 28450]} Length = 116 Back     information, alignment and structure
>d1xl4a2 f.14.1.1 (A:23-138) Inward rectifier potassium channel kirbac3.1 {Magnetospirillum magnetotacticum [TaxId: 188]} Length = 116 Back     information, alignment and structure
>d1zyba2 b.82.3.2 (A:1-147) Probable transcription regulator BT4300, N-terminal domain {Bacteroides thetaiotaomicron [TaxId: 818]} Length = 147 Back     information, alignment and structure
>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]} Length = 103 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query628
d1q3ea_193 HCN pacemaker channel {Mouse (Mus musculus) [TaxId 99.97
d1wgpa_137 Probable cyclic nucleotide-gated ion channel 6 {Th 99.82
d1ne6a2132 Regulatory subunit of Protein kinase A {Cow (Bos t 99.77
d1cx4a1136 Regulatory subunit of Protein kinase A {Rat (Rattu 99.75
d1cx4a2147 Regulatory subunit of Protein kinase A {Rat (Rattu 99.75
d1ne6a1136 Regulatory subunit of Protein kinase A {Cow (Bos t 99.72
d1vp6a_133 Putative ion channel CnbD {Mesorhizobium loti [Tax 99.72
d1zyba2147 Probable transcription regulator BT4300, N-termina 99.71
d1o7fa2155 Regulatory domain of Epac2, domains 1 and 3 {Mouse 99.7
d1o7fa3124 Regulatory domain of Epac2, domains 1 and 3 {Mouse 99.67
d2gaua2142 Transcriptional regulator PG0396, N-terminal domai 99.62
d1i5za2132 Catabolite gene activator protein, N-terminal doma 99.6
d1ft9a2132 CO-sensing protein CooA, N-terminal domain {Rhodos 99.6
d2oz6a2134 Cyclic AMP receptor-like protein Vfr {Pseudomonas 99.59
d3e5ua2139 Chlorophenol reduction protein CprK {Desulfitobact 99.55
d1o5la1129 CRP-like transcriptional regulator TM1171, N-termi 99.55
d2zcwa2112 Transcriptional regulator TTHA1359, N-terminal dom 99.48
d1r3jc_103 Potassium channel protein {Streptomyces coelicolor 99.29
d1xl4a2116 Inward rectifier potassium channel kirbac3.1 {Magn 99.17
d1p7ba2116 Inward rectifier potassium channel Kirbac1.1 {Burk 99.04
d1lnqa280 Potassium channel-related protein MthK {Archaeon M 98.71
d2h8pc157 Potassium channel protein {Streptomyces coelicolor 96.72
d1orsc_132 Potassium channel KVAP {Archaeon Aeropyrum pernix 96.66
d2bgca2131 Listeriolysin regulatory protein PrfA, N-terminal 89.83
d1yhfa1112 Hypothetical protein SPy1581 {Streptococcus pyogen 85.1
>d1q3ea_ b.82.3.2 (A:) HCN pacemaker channel {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: HCN pacemaker channel
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=9.6e-30  Score=243.97  Aligned_cols=182  Identities=26%  Similarity=0.432  Sum_probs=166.6

Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCHhHHHHHHHHHHHHHHhhcCCCHHHHhhcCChhHHHHHHHHHhHHHhhccccccCCc
Q 006857          417 VRLEEMRVKRQDAEQWMSHRMLPENLRDRIRRYEQYKWQETRGVEEEGLLRNLPKDLRRDIKRHLCWDLLMRVPMFEKMD  496 (628)
Q Consensus       417 ~~~~~~~~~~~~~~~~m~~~~lp~~L~~rV~~y~~~~w~~~~~~~e~~ll~~Lp~~Lr~~i~~~l~~~~l~~v~lF~~l~  496 (628)
                      ++.++|+++++.+++||+.+++|++|+.||++|++|.|+. ++.+++++++.||++|+.++..+++.++++++|+|++++
T Consensus         2 s~~~~f~~~~~~i~~~m~~~~i~~~l~~rv~~y~~~~~~~-~~~~~~~i~~~lp~~l~~~i~~~~~~~~l~~~~~F~~~~   80 (193)
T d1q3ea_           2 SSRRQYQEKYKQVEQYMSFHKLPADFRQKIHDYYEHRYQG-KMFDEDSILGELNGPLREEIVNFNCRKLVASMPLFANAD   80 (193)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTT-CCCCHHHHHHHSCHHHHHHHHHHHTHHHHHHCHHHHTSC
T ss_pred             hhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhc-ccccHHHHHHHCCcchhHHHHHHHHHHHHhcchHHHhhh
Confidence            5678999999999999999999999999999999999965 788999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhccceEEeCCCCeEeccCCCcCeEEEEEeeEEEEEEecCCeeeEEEEEEecCCCeEehhhhhhhcCCCCCCC
Q 006857          497 DQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFCGEALLTWALDPQSSSN  576 (628)
Q Consensus       497 ~~~l~~l~~~l~~~~~~~ge~I~~eGd~~~~lyfI~~G~V~v~~~~~g~~~~~~~~~l~~Gd~fGe~~l~~~l~~~~~~~  576 (628)
                      ++++..|+..+++..|.||++|+++||+++.+|||.+|.|++...++ +     ...+++|++|||.+++.+        
T Consensus        81 ~~~l~~l~~~~~~~~~~~g~~I~~~g~~~~~ly~i~~G~v~v~~~~~-~-----~~~l~~G~~fGe~~~~~~--------  146 (193)
T d1q3ea_          81 PNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLTKGN-K-----EMKLSDGSYFGEICLLTR--------  146 (193)
T ss_dssp             HHHHHHHHTTCEEEEECTTCEEECTTSBCCEEEEEEECCEEEEC-CC-C-----EEEECTTCEECHHHHHHC--------
T ss_pred             HHHHHHHHHHHHHHhhccCceecccCCCCcceeEeeeeeEEeecCCc-c-----eeeeccceeeeeeeccCC--------
Confidence            99999999999999999999999999999999999999999876433 2     467999999999998632        


Q ss_pred             CCCcccEEEEcceEEEEEeeHHHHHHHHHHhHHHHHHH
Q 006857          577 RPLSTRTVQALTEVEAFSLMADDLKSVASQFRRLHSKQ  614 (628)
Q Consensus       577 ~~~r~~tv~A~t~~ell~L~~~~f~~ll~~~p~l~~~~  614 (628)
                       .+++++++|.++|+++.|++++|.++++++|++....
T Consensus       147 -~~~~~~~~a~~~~~l~~l~~~~f~~ll~~~p~~~~~~  183 (193)
T d1q3ea_         147 -GRRTASVRADTYCRLYSLSVDNFNEVLEEYPMMRRAF  183 (193)
T ss_dssp             -SBCSSEEEESSCEEEEEEEHHHHHHHHHHSGGGHHHH
T ss_pred             -CcccccceecCceEEEEEeHHHHHHHHHHCHHHHHHH
Confidence             1367899999999999999999999999999876433
>d1wgpa_ b.82.3.2 (A:) Probable cyclic nucleotide-gated ion channel 6 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1ne6a2 b.82.3.2 (A:245-376) Regulatory subunit of Protein kinase A {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1cx4a1 b.82.3.2 (A:130-265) Regulatory subunit of Protein kinase A {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1cx4a2 b.82.3.2 (A:266-412) Regulatory subunit of Protein kinase A {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1ne6a1 b.82.3.2 (A:109-244) Regulatory subunit of Protein kinase A {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1vp6a_ b.82.3.2 (A:) Putative ion channel CnbD {Mesorhizobium loti [TaxId: 381]} Back     information, alignment and structure
>d1zyba2 b.82.3.2 (A:1-147) Probable transcription regulator BT4300, N-terminal domain {Bacteroides thetaiotaomicron [TaxId: 818]} Back     information, alignment and structure
>d1o7fa2 b.82.3.2 (A:13-167) Regulatory domain of Epac2, domains 1 and 3 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1o7fa3 b.82.3.2 (A:322-445) Regulatory domain of Epac2, domains 1 and 3 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2gaua2 b.82.3.2 (A:10-151) Transcriptional regulator PG0396, N-terminal domain {Porphyromonas gingivalis [TaxId: 837]} Back     information, alignment and structure
>d1i5za2 b.82.3.2 (A:6-137) Catabolite gene activator protein, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ft9a2 b.82.3.1 (A:2-133) CO-sensing protein CooA, N-terminal domain {Rhodospirillum rubrum [TaxId: 1085]} Back     information, alignment and structure
>d2oz6a2 b.82.3.2 (A:9-142) Cyclic AMP receptor-like protein Vfr {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d3e5ua2 b.82.3.2 (A:9-147) Chlorophenol reduction protein CprK {Desulfitobacterium hafniense [TaxId: 49338]} Back     information, alignment and structure
>d1o5la1 b.82.3.2 (A:1-129) CRP-like transcriptional regulator TM1171, N-terminal domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]} Back     information, alignment and structure
>d1xl4a2 f.14.1.1 (A:23-138) Inward rectifier potassium channel kirbac3.1 {Magnetospirillum magnetotacticum [TaxId: 188]} Back     information, alignment and structure
>d1p7ba2 f.14.1.1 (A:36-151) Inward rectifier potassium channel Kirbac1.1 {Burkholderia pseudomallei [TaxId: 28450]} Back     information, alignment and structure
>d1lnqa2 f.14.1.1 (A:19-98) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} Back     information, alignment and structure
>d2h8pc1 f.14.1.1 (C:22-78) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]} Back     information, alignment and structure
>d1orsc_ f.14.1.1 (C:) Potassium channel KVAP {Archaeon Aeropyrum pernix [TaxId: 56636]} Back     information, alignment and structure
>d2bgca2 b.82.3.3 (A:7-137) Listeriolysin regulatory protein PrfA, N-terminal domain {Bacteria (Listeria monocytogenes) [TaxId: 1639]} Back     information, alignment and structure
>d1yhfa1 b.82.1.9 (A:1-112) Hypothetical protein SPy1581 {Streptococcus pyogenes [TaxId: 1314]} Back     information, alignment and structure