Citrus Sinensis ID: 006864
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 628 | 2.2.26 [Sep-21-2011] | |||||||
| O04130 | 624 | D-3-phosphoglycerate dehy | yes | no | 0.961 | 0.967 | 0.733 | 0.0 | |
| Q58424 | 524 | D-3-phosphoglycerate dehy | yes | no | 0.816 | 0.979 | 0.428 | 1e-108 | |
| P73821 | 554 | D-3-phosphoglycerate dehy | N/A | no | 0.812 | 0.920 | 0.386 | 8e-98 | |
| O29445 | 527 | D-3-phosphoglycerate dehy | yes | no | 0.805 | 0.960 | 0.396 | 1e-97 | |
| O27051 | 525 | D-3-phosphoglycerate dehy | yes | no | 0.815 | 0.975 | 0.372 | 4e-96 | |
| P35136 | 525 | D-3-phosphoglycerate dehy | yes | no | 0.805 | 0.963 | 0.380 | 2e-95 | |
| O08651 | 533 | D-3-phosphoglycerate dehy | yes | no | 0.614 | 0.724 | 0.429 | 1e-81 | |
| Q5EAD2 | 533 | D-3-phosphoglycerate dehy | yes | no | 0.613 | 0.722 | 0.430 | 2e-81 | |
| Q61753 | 533 | D-3-phosphoglycerate dehy | yes | no | 0.614 | 0.724 | 0.422 | 5e-81 | |
| Q60HD7 | 533 | D-3-phosphoglycerate dehy | N/A | no | 0.613 | 0.722 | 0.421 | 8e-81 |
| >sp|O04130|SERA_ARATH D-3-phosphoglycerate dehydrogenase, chloroplastic OS=Arabidopsis thaliana GN=At1g17745 PE=1 SV=2 | Back alignment and function desciption |
|---|
Score = 919 bits (2375), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 460/627 (73%), Positives = 528/627 (84%), Gaps = 23/627 (3%)
Query: 3 ASSSSSSSIKPI---FTTRSKSSNSSKSSLLSFLHNTKPKPISLKFSSHNSNYTTPPSFT 59
A SSS SS+K + +T+ S S +S + L +FLH Y T T
Sbjct: 2 AFSSSCSSVKAVNSRWTSPSPSPSSRFAVLPAFLHR---------------RYATSVKLT 46
Query: 60 -ISNSLQTALETSELHVSKFQ----DDLNVQAVTPKPTILVSEKLGEAGLAILRSFGNVE 114
IS +L+T +T+ ++F D PKP ILV+EKLGEAG+ +LR FG+V+
Sbjct: 47 AISAALKTVEQTTLTEDNRFSTVGSDSDEYNPTLPKPRILVTEKLGEAGVNLLREFGDVD 106
Query: 115 CLYDLSPEALCEKISQCDALIVRSGTKVTRSVFEAANGKLKVVGRAGVGIDNVDLQAATE 174
C YDLSPE L +K+++ DALIVRSGTKVTR VFEAA G+LKVVGRAGVGIDNVDLQAATE
Sbjct: 107 CSYDLSPEDLKKKVAESDALIVRSGTKVTREVFEAAKGRLKVVGRAGVGIDNVDLQAATE 166
Query: 175 FGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGKTLAV 234
GCLVVNAP ANTVAAAEHGIALLASMARNV+QADASIKAGKW RSKYVGVSLVGKTLAV
Sbjct: 167 HGCLVVNAPTANTVAAAEHGIALLASMARNVAQADASIKAGKWERSKYVGVSLVGKTLAV 226
Query: 235 MGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLN 294
MGFGKVG+EVARRAKGLGM VI+HDPYAPAD+ARA+GV+LVSFDQA++TADF+SLHMPL
Sbjct: 227 MGFGKVGTEVARRAKGLGMTVISHDPYAPADRARALGVDLVSFDQAISTADFVSLHMPLT 286
Query: 295 PTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEEPPAKD 354
P T K+FNDETF+KMKKGVR++NVARGGVIDE+ALVRALD+G+VAQAALDVF EEPP+KD
Sbjct: 287 PATKKVFNDETFSKMKKGVRLINVARGGVIDEDALVRALDAGIVAQAALDVFCEEPPSKD 346
Query: 355 SKLVQHENVTVTPHLGASTKEAQEGVAIEIAEAVVGALRGELSATAINAPMVPSEVLSEL 414
S+L+QHENVTVTPHLGASTKEAQEGVAIEIAEAV GAL+GELSATA+NAPMV EVLSEL
Sbjct: 347 SRLIQHENVTVTPHLGASTKEAQEGVAIEIAEAVAGALKGELSATAVNAPMVAPEVLSEL 406
Query: 415 APYVVLAKKLGRLAVQLVSGGSGIKSVKLIYRSARDPDDLDTRILRAMITKGIIEPISAS 474
PY+VLA+KLGRLAVQL SGG G++S++++YRSARD DDLDTR+LRAMITKGIIEPIS S
Sbjct: 407 TPYIVLAEKLGRLAVQLASGGKGVQSIRVVYRSARDRDDLDTRLLRAMITKGIIEPISDS 466
Query: 475 FINLVNADFTAKQKGLRISEERVVADSSPEFPIDSIQVQLSNVDSKFAAAVSENGEISIE 534
++NLVNADF AKQKGLRISEER+V DSSPE+P+DSIQVQ+ NV+S FA AVS+ G+ISIE
Sbjct: 467 YVNLVNADFIAKQKGLRISEERMVVDSSPEYPVDSIQVQILNVESNFAGAVSDAGDISIE 526
Query: 535 GKVKFGIPHLTRVGSFGVDASLEGNLILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRT 594
GKVK+G+PHLT VGSFGVD SLEGNLILCRQVDQPGMIG+VGNILGE NVNVNFMSVGRT
Sbjct: 527 GKVKYGVPHLTCVGSFGVDVSLEGNLILCRQVDQPGMIGQVGNILGEQNVNVNFMSVGRT 586
Query: 595 FRRNHGIMAIGVDEEPNQDSLKEIGKV 621
R IMAIGVDEEP+ +L+ IG V
Sbjct: 587 VLRKQAIMAIGVDEEPDNKTLERIGGV 613
|
Arabidopsis thaliana (taxid: 3702) EC: 1EC: .EC: 1EC: .EC: 1EC: .EC: 9EC: 5 |
| >sp|Q58424|SERA_METJA D-3-phosphoglycerate dehydrogenase OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=serA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 392 bits (1008), Expect = e-108, Method: Compositional matrix adjust.
Identities = 232/541 (42%), Positives = 327/541 (60%), Gaps = 28/541 (5%)
Query: 93 ILVSEKLGEAGLAILRSFGNVECLYDLSPEALCEKISQCDALIVRSGTKVTRSVFEAANG 152
ILV++ L E + IL G VE L+ E L EKI D L+VRSGTKVTR V E A
Sbjct: 4 ILVTDPLHEDAIKILEEVGEVEVATGLTKEELLEKIKDADVLVVRSGTKVTRDVIEKAE- 62
Query: 153 KLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASI 212
KLKV+GRAGVG+DN+D++AATE G +VVNAP A++++ AE + L+ + ARN+ QA AS+
Sbjct: 63 KLKVIGRAGVGVDNIDVEAATEKGIIVVNAPDASSISVAELTMGLMLAAARNIPQATASL 122
Query: 213 KAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGV 272
K G+W R ++ G+ L GKTL V+G G++G +V +RAK GMN+I +DPY P + A ++GV
Sbjct: 123 KRGEWDRKRFKGIELYGKTLGVIGLGRIGQQVVKRAKAFGMNIIGYDPYIPKEVAESMGV 182
Query: 273 ELV-SFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVR 331
ELV ++ ADFI+LH+PL P T I E A MKK IVN ARGG+IDE+AL
Sbjct: 183 ELVDDINELCKRADFITLHVPLTPKTRHIIGREQIALMKKNAIIVNCARGGLIDEKALYE 242
Query: 332 ALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKEAQEGVAIEIAEAVVGA 391
AL G + AALDVF EEPP KD+ L+ +NV TPH GAST+EAQ+ +AE +
Sbjct: 243 ALKEGKIRAAALDVFEEEPP-KDNPLLTLDNVIGTPHQGASTEEAQKAAGTIVAEQIKKV 301
Query: 392 LRGELSATAINAPMVPSEVLSELAPYVVLAKKLGRLAVQLVSGGSGIKSVKLIYRS--AR 449
LRGEL+ +N P +P E L +L PY++LA+ LG + +Q++ G + V+LIY A+
Sbjct: 302 LRGELAENVVNMPNIPQEKLGKLKPYMLLAEMLGNIVMQVLDG--SVNRVELIYSGELAK 359
Query: 450 DPDDLDTRILRAMITKGIIEPISASFINLVNADFTAKQKGLRISEERVVADSSPEFPIDS 509
+ DL I RA + KG++ PI + INLVNA AK + + + E + +S E ++
Sbjct: 360 EKTDL---IKRAFL-KGLLSPILLAGINLVNAPIIAKNRNINVVE----SSTSEEKYGNA 411
Query: 510 IQVQLSNVDSKFAAAVSENGEISIEGKVKFGIPHLTRVGSFGVDASLEGNLILCRQVDQP 569
I++ + KF SI G + P + V + V EG L + + +D+P
Sbjct: 412 IKITAESDKKKF----------SIVGAIINNKPVILEVDGYEVSFIPEGVLAIIKHIDRP 461
Query: 570 GMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDE---EPNQDSLKEIGKVHFVAR 626
G IG+V LG++ +N+ M VGR +M + +D E + +KEI + VA
Sbjct: 462 GTIGRVCITLGDYGINIASMQVGRKEPGGESVMLLNLDHTVPEEVIEKIKEIPNIKDVAV 521
Query: 627 I 627
I
Sbjct: 522 I 522
|
Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) (taxid: 243232) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 9 EC: 5 |
| >sp|P73821|SERA_SYNY3 D-3-phosphoglycerate dehydrogenase OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=serA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 358 bits (919), Expect = 8e-98, Method: Compositional matrix adjust.
Identities = 205/531 (38%), Positives = 318/531 (59%), Gaps = 21/531 (3%)
Query: 93 ILVSEKLGEAGLAILRSFGNVECLYDLSPEALCEKISQCDALIVRSGTKVTRSVFEAANG 152
+LVS+ + + G+ IL+ V+ LS + + + + DA+++RS TKVT + +A +
Sbjct: 32 VLVSDSIDQVGIDILKQVAQVDVKTGLSEAEIIDIVPEYDAIMLRSATKVTEKIIQAGS- 90
Query: 153 KLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASI 212
+LK++GRAGVG+DN+D+ AAT G +VVN+P NT+AAAEH +A++ ++AR++ A+ S+
Sbjct: 91 QLKIIGRAGVGVDNIDVPAATRQGIVVVNSPEGNTIAAAEHALAMMMALARHIPDANKSV 150
Query: 213 KAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGV 272
K KW R +++G + KTL V+G GK+GS VA AK +GM ++A+DP+ ++A +G
Sbjct: 151 KESKWERKQFIGTEVYKKTLGVVGLGKIGSHVAGVAKAMGMKLLAYDPFISQERADQIGC 210
Query: 273 ELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRA 332
LV D + ADFI+LH+P P T+ + N ET AKMK RI+N +RGG+IDEEALV A
Sbjct: 211 TLVDLDLLFSEADFITLHIPKTPETANLINAETLAKMKPTARIINCSRGGIIDEEALVTA 270
Query: 333 LDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKEAQEGVAIEIAEAVVGAL 392
+++ + AALDVF +E P +S+L + NV +TPHLGAST+EAQ VA+++AE + L
Sbjct: 271 IETAQIGGAALDVFAQE-PLGESRLREFSNVILTPHLGASTEEAQVNVAVDVAEQIRDVL 329
Query: 393 RGELSATAINAPMVPSEVLSELAPYVVLAKKLGRLAVQLVSGGSGIKSVKLIYRSARDPD 452
G + +A+N P + +V+ +L PY+ LA+ LG L QL G +V L A +
Sbjct: 330 LGLPARSAVNIPGLTPDVMEKLRPYLKLAETLGTLVGQLAGGRIDRLTVCLQGDLA---E 386
Query: 453 DLDTRILRAMITKGIIEPISASFINLVNADFTAKQKGLRISEERVVADSSPEFPIDSIQV 512
+++ L KG++ +N VNA AK++G+R+ E + D+S S+ +
Sbjct: 387 YTNSQPLVVAAIKGLLSQALRERVNYVNAAIEAKERGIRVIETK---DASVRDYSGSLHL 443
Query: 513 QLSNVDSKFAA--AVSENGEISIEGKVKFGIPHLTRVGSFGVDASLEGNLILCRQVDQPG 570
+ + + +A A+ NGEI I T V F ++ ++ D PG
Sbjct: 444 KATGTMGEHSATGALLSNGEIRI-----------TDVDEFPINVPPNNYMLFTLHRDMPG 492
Query: 571 MIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDEEPNQDSLKEIGKV 621
+IGK+G++LG NVN+ M VGR R IMA+ +D+ L EI KV
Sbjct: 493 IIGKIGSLLGSFNVNIASMQVGRKIVRGDAIMALSLDDPLPDGLLSEITKV 543
|
Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 9 EC: 5 |
| >sp|O29445|SERA_ARCFU D-3-phosphoglycerate dehydrogenase OS=Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) GN=serA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 357 bits (917), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 213/537 (39%), Positives = 328/537 (61%), Gaps = 31/537 (5%)
Query: 93 ILVSEKLGEAGLAILRSFG-NVECLYDLSPEALCEKISQCDALIVRSGTKVTRSVFEAAN 151
+LV+E + E + +R G VE +S E L ++ + +A++VRS TKV V +AA
Sbjct: 3 VLVAEPISEEAIDYMRKNGLEVEVKTGMSREELIREVPKYEAIVVRSQTKVDAEVIQAAK 62
Query: 152 GKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADAS 211
LK++GRAGVG+DN+D+ AAT+ G +VVNAP NT++ AEH IAL+ + AR + QAD S
Sbjct: 63 -NLKIIGRAGVGVDNIDINAATQRGIVVVNAPGGNTISTAEHAIALMLAAARKIPQADRS 121
Query: 212 IKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVG 271
+K GKW R K++G+ L GKT V+G G+VG EVA+R K L MNV+A+DP+ ++A +G
Sbjct: 122 VKEGKWERKKFMGIELRGKTAGVIGLGRVGFEVAKRCKALEMNVLAYDPFVSKERAEQIG 181
Query: 272 VELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVR 331
V+LV FD LA++D I++H+P T + F KMK GV +VN ARGG++DE AL
Sbjct: 182 VKLVDFDTLLASSDVITVHVPRTKETIGLIGKGQFEKMKDGVIVVNAARGGIVDEAALYE 241
Query: 332 ALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKEAQEGVAIEIAEAVVGA 391
A+ +G VA AALDV+ +EPP+ D+ L++ +NV TPH+ AST+EAQ V + IAE +V
Sbjct: 242 AIKAGKVAAAALDVYEKEPPSPDNPLLKLDNVVTTPHIAASTREAQLNVGMIIAEDIVNM 301
Query: 392 LRGELSATAINAPMVPSEVLSELAPYVVLAKKLGRLA-VQLVSGGSGIKSVKLIY--RSA 448
+G A+N P + + P++ LA+K+G++A V+L G I+ VK+ + A
Sbjct: 302 AKGLPVRNAVNLPSIEPSDFEFMMPFLTLAEKMGKIASVRL---GGAIRKVKVTCSGKLA 358
Query: 449 RDPDDLDTRILRAMITKGIIEPISASFINLVNADFTAKQKGLRISEERVVADSSPEFPID 508
+ TR L KG+ EPI ++ INLV+A A ++G+ I E +V +
Sbjct: 359 TKNTEFVTRAL----LKGLFEPILSNEINLVSAKPVAVERGITIEESKV----------E 404
Query: 509 SIQVQLSNVDSKFAAAVSENG-EISIEGKVKFGIPH-LTRVGSFGVDASLEGNLILCRQV 566
S++ + +S V NG E+ + G FG + + ++ + V+ +G+ I+
Sbjct: 405 SVE----HYESLLEVWVESNGKEMYLAGTC-FGNEYRILKIDVYNVNFVPKGHYIISLHE 459
Query: 567 DQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGI--MAIGVDEEPNQDSLKEIGKV 621
D+PG+IG+VG + G +N+N+ M VGR+ + GI M + VD+ P + L+E+ K+
Sbjct: 460 DKPGVIGRVGTLFGRNNINIAGMIVGRSGDKPGGIQLMLLLVDDPPTPEVLEEMTKL 516
|
Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) (taxid: 224325) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 9 EC: 5 |
| >sp|O27051|SERA_METTH D-3-phosphoglycerate dehydrogenase OS=Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H) GN=serA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 352 bits (904), Expect = 4e-96, Method: Compositional matrix adjust.
Identities = 198/532 (37%), Positives = 311/532 (58%), Gaps = 20/532 (3%)
Query: 93 ILVSEKLGEAGLAILRSFGNVECLYDLSPEALCEKISQCDALIVRSGTKVTRSVFEAANG 152
+L+++ + E G++ L V ++PE L + I DA++VRS TKVTR V EAA
Sbjct: 6 VLIADSINEKGISELEEVAEVVVNTTITPEELLDAIKDFDAIVVRSRTKVTREVIEAAP- 64
Query: 153 KLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASI 212
+LK++ RAGVG+DNVD++AAT+ G +V+NAP + ++ AEH I L+ ++AR ++ AD S+
Sbjct: 65 RLKIIARAGVGVDNVDVKAATDRGIMVINAPESTSITVAEHSIGLMLALARKIAIADRSV 124
Query: 213 KAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGV 272
K GKW +++++G+ L GKTL ++G G++GS+V R K GM+++ +DPY + A +GV
Sbjct: 125 KEGKWEKNRFMGIELNGKTLGIIGMGRIGSQVVVRTKAFGMDIMVYDPYISKEAAEEMGV 184
Query: 273 ELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRA 332
+ + L +D +++H+PL P T + +++ F MK IVN ARGG+IDE+AL RA
Sbjct: 185 TVTDLETLLRESDIVTIHVPLTPETRHLISEDEFKLMKDTAFIVNCARGGIIDEDALYRA 244
Query: 333 LDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKEAQEGVAIEIAEAVVGAL 392
L G +A AALDVF EEPP + S L++ ENV +TPH+GAST EAQ AI +A +
Sbjct: 245 LKDGEIAGAALDVFEEEPP-EGSPLLELENVVLTPHIGASTSEAQRDAAIIVANEIKTVF 303
Query: 393 RGELSATAINAPMVPSEVLSELAPYVVLAKKLGRLAVQLVSGGSGIKSVKLIYRSARDPD 452
+G +N P++ SE L PY+ LA+K+G + Q + G I+ + + Y +
Sbjct: 304 QGGAPRNVLNMPVMDSETYKSLKPYIELAEKMGAIIAQALPG--NIEKLDVTY--CGELA 359
Query: 453 DLDTRILRAMITKGIIEPISASFINLVNADFTAKQKGLRISEERVVADSSPEFPIDSIQV 512
++ IL + + I+ PI +NL+NA AK++G+ ++E R S SI +
Sbjct: 360 EMQFDILTRTMLQAILNPILTEPVNLINAPSIAKKRGIMVTEAR----RSESDGYRSIII 415
Query: 513 QLSNVDSKFAAAVSENGEISIEGKVKFGIPHLTRVGSFGVDASLEGNLILCRQVDQPGMI 572
A A S+ G S+E P + + + VD EG +I+ R D PG I
Sbjct: 416 ---------ATAESDRGGFSVEA-THIKEPTIIGINGYRVDVKPEGTMIIARYRDLPGTI 465
Query: 573 GKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDEEPNQDSLKEIGKVHFV 624
G +G LG+H +N+ M VGR +M + VD+ + ++E+ K+ V
Sbjct: 466 GAIGTKLGQHGINIATMQVGRKEIGGEAVMVLKVDQSVPAEVIEEVKKLDNV 517
|
Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H) (taxid: 187420) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 9 EC: 5 |
| >sp|P35136|SERA_BACSU D-3-phosphoglycerate dehydrogenase OS=Bacillus subtilis (strain 168) GN=serA PE=3 SV=3 | Back alignment and function description |
|---|
Score = 350 bits (898), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 203/533 (38%), Positives = 310/533 (58%), Gaps = 27/533 (5%)
Query: 93 ILVSEKLGEAGLAILRSFGNVECLYDLSPEALCEKISQCDALIVRSGTKVTRSVFEAANG 152
+LVS+K+ GL L +E + +A E + DAL+VRS TKVT +F
Sbjct: 4 VLVSDKMSNDGLQPLIESDFIEIVQKNVADAEDE-LHTFDALLVRSATKVTEDLFNKMT- 61
Query: 153 KLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASI 212
LK+VGRAGVG+DN+D+ AT+ G +V+NAP NT++ AEH A+++S+ R++ QA+ S+
Sbjct: 62 SLKIVGRAGVGVDNIDIDEATKHGVIVINAPNGNTISTAEHTFAMISSLMRHIPQANISV 121
Query: 213 KAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGV 272
K+ +W R+ YVG L GKTL ++G G++GSE+A+RA+ GM V DP+ ++A+ +GV
Sbjct: 122 KSREWNRTAYVGSELYGKTLGIVGLGRIGSEIAQRARAFGMTVHVFDPFLTEERAKKIGV 181
Query: 273 ELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRA 332
+F++ L +AD I++H PL T + N ET AK KKGVR++N ARGG+IDE AL+ A
Sbjct: 182 NSRTFEEVLESADIITVHTPLTKETKGLLNKETIAKTKKGVRLINCARGGIIDEAALLEA 241
Query: 333 LDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKEAQEGVAIEIAEAVVGAL 392
L++G VA AALDVF EPP D+KLV H V TPHLGASTKEAQ VA +++E V+
Sbjct: 242 LENGHVAGAALDVFEVEPPV-DNKLVDHPLVIATPHLGASTKEAQLNVAAQVSEEVLQFA 300
Query: 393 RGELSATAINAPMVPSEVLSELAPYVVLAKKLGRLAVQLVSGGSGIKSVKLIYRSARDPD 452
+G +AIN P + + +++ PY +A K+G L Q + ++ V + Y
Sbjct: 301 KGLPVMSAINLPAMTKDEFAKIKPYHQIAGKIGSLVSQCMK--EPVQDVAIQYEGT--IA 356
Query: 453 DLDTRILRAMITKGIIEPISASFINLVNADFTAKQKGLRISEERVVADSSPEFPIDSIQV 512
L+T + + G ++P S +N VNA AK++G+ SE+ ++S + + I V
Sbjct: 357 KLETSFITKALLSGFLKPRVDSTVNEVNAGGVAKERGISFSEKISSSESGYD---NCISV 413
Query: 513 QLSNVDSKFAAAVSENGEISIEGKVKFGIPH----LTRVGSFGVDASLEGNLILCRQVDQ 568
+++ S F + IPH + + F +D G+L+ + D
Sbjct: 414 KVTGDRSTFTVTATY-------------IPHFGERIVEINGFNIDFYPTGHLVYIQHQDT 460
Query: 569 PGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDEEPNQDSLKEIGKV 621
G+IG+VG ILG++++N+ M VGR + IM + D +KE+ V
Sbjct: 461 TGVIGRVGRILGDNDINIATMQVGRKEKGGEAIMMLSFDRHLEDKIVKELTNV 513
|
Bacillus subtilis (strain 168) (taxid: 224308) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 9 EC: 5 |
| >sp|O08651|SERA_RAT D-3-phosphoglycerate dehydrogenase OS=Rattus norvegicus GN=Phgdh PE=1 SV=3 | Back alignment and function description |
|---|
Score = 304 bits (779), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 177/412 (42%), Positives = 243/412 (58%), Gaps = 26/412 (6%)
Query: 93 ILVSEKLGEAGLAILRSFG-NVECLYDLSPEALCEKISQCDALIVRSGTKVTRSVFEAAN 151
IL+S+ L IL+ G V +LS E L ++ C+ LIVRS TKVT V AA
Sbjct: 9 ILISDSLDPCCRKILQDGGLQVVEKQNLSKEELIAELQDCEGLIVRSATKVTADVINAAE 68
Query: 152 GKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADAS 211
KL+VVGRAG G+DNVDL+AAT G LV+N P N+++AAE +L +AR + QA AS
Sbjct: 69 -KLQVVGRAGTGVDNVDLEAATRKGVLVMNTPNGNSLSAAELTCGMLMCLARQIPQATAS 127
Query: 212 IKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVG 271
+K GKW R K++G L GKTL ++G G++G EVA R + GM + +DP + A + G
Sbjct: 128 MKDGKWDRKKFMGTELNGKTLGILGLGRIGREVAARMQAFGMKTVGYDPIISPEVAASFG 187
Query: 272 VELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVR 331
V+ + ++ DFI++H PL P+T+ + ND TFA+ KKGVR+VN ARGG++DE AL+R
Sbjct: 188 VQQLPLEEIWPLCDFITVHTPLLPSTTGLLNDSTFAQCKKGVRVVNCARGGIVDEGALLR 247
Query: 332 ALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKEAQEGVAIEIAEAVVGA 391
AL SG A AALDVFTEEPP +D LV HENV PHLGASTKEAQ EIA V
Sbjct: 248 ALQSGQCAGAALDVFTEEPP-RDRALVDHENVISCPHLGASTKEAQSRCGEEIAVQFVDM 306
Query: 392 LRGELSATAINAPMVPSEVLSELAPYVVLAKKLGRL----------AVQLVSGGSGIKSV 441
++G+ +NA + S P++ LA+ LG L +Q+V+ G+ +K+
Sbjct: 307 VKGKSLTGVVNAQALTSAFSPHTKPWIGLAEALGTLMHAWAGSPKGTIQVVTQGTSLKNA 366
Query: 442 KLIYRSARDPDDLDTRILRAMITKGIIEPISASFINLVNADFTAKQKGLRIS 493
T + A+I + E + +NLVNA K+ GL ++
Sbjct: 367 -------------GTCLSPAVIVGLLREASKQADVNLVNAKLLVKEAGLNVT 405
|
Rattus norvegicus (taxid: 10116) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 9 EC: 5 |
| >sp|Q5EAD2|SERA_BOVIN D-3-phosphoglycerate dehydrogenase OS=Bos taurus GN=PHGDH PE=2 SV=3 | Back alignment and function description |
|---|
Score = 303 bits (777), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 178/413 (43%), Positives = 243/413 (58%), Gaps = 28/413 (6%)
Query: 93 ILVSEKLGEAGLAILRSFG-NVECLYDLSPEALCEKISQCDALIVRSGTKVTRSVFEAAN 151
+L+S+ L IL+ G V +LS E L ++ C+ LIVRS TKVT + AA
Sbjct: 9 VLISDSLDPCCRKILQDGGLQVVEKQNLSKEELIAELQDCEGLIVRSATKVTSDIINAAE 68
Query: 152 GKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADAS 211
KL+VVGRAG G+DNVDL+AAT G LV+N P N+++AAE ++ +AR + QA AS
Sbjct: 69 -KLQVVGRAGTGVDNVDLEAATRKGILVMNTPNGNSLSAAELTCGMIMCLARQIPQAAAS 127
Query: 212 IKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVG 271
+K GKW R K++G L GK L ++G G++G EVA R + GM I +DP + + + G
Sbjct: 128 MKDGKWERKKFMGTELNGKVLGILGLGRIGREVATRMQSFGMKTIGYDPIISPEVSASFG 187
Query: 272 VELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVR 331
V+ + +Q DFI++H PL P+T+ + ND TFA+ KKGV +VN ARGG++DE AL+R
Sbjct: 188 VQQLPLEQIWPLCDFITVHTPLLPSTTGLLNDSTFAQCKKGVCVVNCARGGIVDEGALLR 247
Query: 332 ALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKEAQEGVAIEIAEAVVGA 391
AL SG A AALDVFTEEPP +D LV HENV PHLGASTKEAQ EIA V
Sbjct: 248 ALQSGQCAGAALDVFTEEPP-RDRALVNHENVISCPHLGASTKEAQSRCGEEIALQFVDM 306
Query: 392 LRGELSATAINAPMVPSEVLSELAPYVVLAKKLGRL----------AVQLVSGGSGIKSV 441
++G+ A +NA + S P+V LAK LG L A+Q+V+ GS +K+
Sbjct: 307 VKGKALAGVVNAQALASIFCPHTKPWVSLAKALGALMQAWAGSPKGAIQVVTQGSSLKN- 365
Query: 442 KLIYRSARDPDDLDTRILRAMITKGIIEPIS-ASFINLVNADFTAKQKGLRIS 493
L + G+++ S S +NLVNA K+ GL ++
Sbjct: 366 -------------SGSCLAPAVIIGLLKDASQQSNVNLVNAMLLVKEAGLDVT 405
|
Bos taurus (taxid: 9913) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 9 EC: 5 |
| >sp|Q61753|SERA_MOUSE D-3-phosphoglycerate dehydrogenase OS=Mus musculus GN=Phgdh PE=1 SV=3 | Back alignment and function description |
|---|
Score = 302 bits (773), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 174/412 (42%), Positives = 243/412 (58%), Gaps = 26/412 (6%)
Query: 93 ILVSEKLGEAGLAILRSFG-NVECLYDLSPEALCEKISQCDALIVRSGTKVTRSVFEAAN 151
+L+S+ L IL+ G V +LS E L ++ C+ LIVRS TKVT V AA
Sbjct: 9 VLISDSLDPCCRKILQDGGLQVVEKQNLSKEELIAELQDCEGLIVRSATKVTADVINAAE 68
Query: 152 GKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADAS 211
KL+VVGRAG G+DNVDL+AAT G LV+N P N+++AAE ++ +AR + QA AS
Sbjct: 69 -KLQVVGRAGTGVDNVDLEAATRKGILVMNTPNGNSLSAAELTCGMIMCLARQIPQATAS 127
Query: 212 IKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVG 271
+K GKW R K++G L GKTL ++G G++G EVA R + GM + +DP + A + G
Sbjct: 128 MKDGKWDRKKFMGTELNGKTLGILGLGRIGREVATRMQSFGMKTVGYDPIISPEVAASFG 187
Query: 272 VELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVR 331
V+ + ++ DFI++H PL P+T+ + ND TFA+ KKGVR+VN ARGG++DE AL+R
Sbjct: 188 VQQLPLEEIWPLCDFITVHTPLLPSTTGLLNDSTFAQCKKGVRVVNCARGGIVDEGALLR 247
Query: 332 ALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKEAQEGVAIEIAEAVVGA 391
AL SG A AALDVFTEEPP +D LV HENV PHLGASTKEAQ EIA V
Sbjct: 248 ALQSGQCAGAALDVFTEEPP-RDRALVDHENVISCPHLGASTKEAQSRCGEEIAVQFVDM 306
Query: 392 LRGELSATAINAPMVPSEVLSELAPYVVLAKKLGRL----------AVQLVSGGSGIKSV 441
++G+ +NA + S P++ LA+ +G L +Q+V+ G+ +K+
Sbjct: 307 VKGKSLTGVVNAQALTSAFSPHTKPWIGLAEAMGTLMHAWAGSPKGTIQVVTQGTSLKNA 366
Query: 442 KLIYRSARDPDDLDTRILRAMITKGIIEPISASFINLVNADFTAKQKGLRIS 493
T + A+I + E + +NLVNA K+ GL ++
Sbjct: 367 -------------GTCLSPAVIVGLLREASKQADVNLVNAKLLVKEAGLNVT 405
|
Mus musculus (taxid: 10090) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 9 EC: 5 |
| >sp|Q60HD7|SERA_MACFA D-3-phosphoglycerate dehydrogenase OS=Macaca fascicularis GN=PHGDH PE=2 SV=4 | Back alignment and function description |
|---|
Score = 301 bits (772), Expect = 8e-81, Method: Compositional matrix adjust.
Identities = 174/413 (42%), Positives = 243/413 (58%), Gaps = 28/413 (6%)
Query: 93 ILVSEKLGEAGLAILRSFG-NVECLYDLSPEALCEKISQCDALIVRSGTKVTRSVFEAAN 151
+L+S+ L IL+ G V +LS E L ++ C+ LIVRS TKVT V AA
Sbjct: 9 VLISDSLDPCCRKILQDGGLQVVEKQNLSKEELIAELQDCEGLIVRSATKVTADVINAAE 68
Query: 152 GKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADAS 211
KL+VVGRAG G+DNVDL+AAT G LV+N P N+++AAE ++ +AR + QA AS
Sbjct: 69 -KLQVVGRAGTGVDNVDLEAATRKGVLVMNTPNGNSLSAAELTCGMIMCLARQIPQATAS 127
Query: 212 IKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVG 271
+K GKW R K++G L GKTL ++G G++G EVA R + GM I +DP + + + G
Sbjct: 128 MKDGKWERKKFMGTELNGKTLGILGLGRIGREVATRMQSFGMKTIGYDPIISPEVSASFG 187
Query: 272 VELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVR 331
V+ + ++ DFI++H PL P+T+ + ND TFA+ KKGVR+VN ARGG++DE AL+R
Sbjct: 188 VQQLPLEEIWPLCDFITVHTPLLPSTTGLLNDNTFAQCKKGVRVVNCARGGIVDEGALLR 247
Query: 332 ALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKEAQEGVAIEIAEAVVGA 391
AL SG A AALDVFTEEPP +D LV HENV PHLGASTKEAQ EIA V
Sbjct: 248 ALQSGQCAGAALDVFTEEPP-RDRALVDHENVISCPHLGASTKEAQSRCGEEIAVQFVDM 306
Query: 392 LRGELSATAINAPMVPSEVLSELAPYVVLAKKLGRL----------AVQLVSGGSGIKSV 441
++G+ A +NA + S P++ LA+ LG L +Q+++ G+ +K+
Sbjct: 307 VKGKSLAGVVNAQALTSAFSPHTKPWIGLAEALGTLMRAWAGSPKGTIQVITQGTSLKNA 366
Query: 442 KLIYRSARDPDDLDTRILRAMITKGIIEPISASF-INLVNADFTAKQKGLRIS 493
L + G+++ S +NLVNA K+ GL ++
Sbjct: 367 G--------------NCLSPAVIVGLLKEASKQADVNLVNAKLLVKEAGLDVT 405
|
Macaca fascicularis (taxid: 9541) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 9 EC: 5 |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 628 | ||||||
| 224100535 | 637 | predicted protein [Populus trichocarpa] | 0.985 | 0.971 | 0.788 | 0.0 | |
| 224113315 | 633 | predicted protein [Populus trichocarpa] | 0.971 | 0.963 | 0.781 | 0.0 | |
| 357467711 | 630 | Phosphoglycerate dehydrogenase [Medicago | 0.972 | 0.969 | 0.769 | 0.0 | |
| 356521735 | 623 | PREDICTED: d-3-phosphoglycerate dehydrog | 0.964 | 0.972 | 0.772 | 0.0 | |
| 356526328 | 621 | PREDICTED: d-3-phosphoglycerate dehydrog | 0.968 | 0.979 | 0.768 | 0.0 | |
| 225443272 | 624 | PREDICTED: d-3-phosphoglycerate dehydrog | 0.847 | 0.852 | 0.862 | 0.0 | |
| 255568067 | 633 | d-3-phosphoglycerate dehydrogenase, puta | 0.977 | 0.969 | 0.747 | 0.0 | |
| 449461667 | 631 | PREDICTED: d-3-phosphoglycerate dehydrog | 0.982 | 0.977 | 0.766 | 0.0 | |
| 449533397 | 594 | PREDICTED: d-3-phosphoglycerate dehydrog | 0.898 | 0.949 | 0.808 | 0.0 | |
| 18394525 | 624 | D-3-phosphoglycerate dehydrogenase [Arab | 0.961 | 0.967 | 0.733 | 0.0 |
| >gi|224100535|ref|XP_002311914.1| predicted protein [Populus trichocarpa] gi|222851734|gb|EEE89281.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 975 bits (2521), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 495/628 (78%), Positives = 550/628 (87%), Gaps = 9/628 (1%)
Query: 1 MAASSSSSSSIKPIFTT-RSKSSNSSKSSLLSFLHNTKPKPISLKFSSHNSNY-----TT 54
MA+SS+ S P TT S S S++SSLLSFL NT P PISLK S +++ ++
Sbjct: 1 MASSSTKPISTPPFTTTISSSSQPSTRSSLLSFLRNTTPTPISLKLSHSRNSFLNSHSSS 60
Query: 55 PPSFTISNSLQTALETSELHVSKFQ-DDLNVQAVTPKPTILVSEKLGEAGLAILRSFGNV 113
S +I N+ +T VSK D + Q KPTILVSEKLGEAGL +LRSFG+V
Sbjct: 61 SRSLSIKNATKTIESAETSRVSKVGGQDADSQET--KPTILVSEKLGEAGLELLRSFGDV 118
Query: 114 ECLYDLSPEALCEKISQCDALIVRSGTKVTRSVFEAANGKLKVVGRAGVGIDNVDLQAAT 173
+C YDLS E LC+KI+ CDALIVRSGTKVTR VFEAA GKLKVVGRAGVGIDNVDLQAAT
Sbjct: 119 DCSYDLSQEDLCKKIASCDALIVRSGTKVTRQVFEAAKGKLKVVGRAGVGIDNVDLQAAT 178
Query: 174 EFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGKTLA 233
EFGCLVVNAP ANTVAAAEHGIALLA+MARNV+QADAS+KAG+W R+KYVGVSLVGKTLA
Sbjct: 179 EFGCLVVNAPTANTVAAAEHGIALLAAMARNVAQADASMKAGQWQRNKYVGVSLVGKTLA 238
Query: 234 VMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPL 293
VMGFGKVGSEVARRAKGLGM VIAHDPYAPAD+ARA+GVELVSFDQA++TADFISLHMPL
Sbjct: 239 VMGFGKVGSEVARRAKGLGMQVIAHDPYAPADRARAIGVELVSFDQAISTADFISLHMPL 298
Query: 294 NPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEEPPAK 353
P+T K+FND+TFAK+K GVRI+NVARGGVIDE+ALVRALDSG VAQAALDVFTEEPP K
Sbjct: 299 TPSTEKVFNDDTFAKVKTGVRIINVARGGVIDEDALVRALDSGKVAQAALDVFTEEPPPK 358
Query: 354 DSKLVQHENVTVTPHLGASTKEAQEGVAIEIAEAVVGALRGELSATAINAPMVPSEVLSE 413
DSKLVQHE VTVTPHLGASTKEAQEGVAIEIAEAVVGAL+GEL+ATA+NAPMVP+EVLSE
Sbjct: 359 DSKLVQHERVTVTPHLGASTKEAQEGVAIEIAEAVVGALQGELAATAVNAPMVPAEVLSE 418
Query: 414 LAPYVVLAKKLGRLAVQLVSGGSGIKSVKLIYRSARDPDDLDTRILRAMITKGIIEPISA 473
LAPYVVLA+KLGRLAVQLV+GGSGIKS K++YRS+RDPDDLDTR+LRAMITKGIIEPIS
Sbjct: 419 LAPYVVLAEKLGRLAVQLVAGGSGIKSAKVVYRSSRDPDDLDTRLLRAMITKGIIEPISD 478
Query: 474 SFINLVNADFTAKQKGLRISEERVVADSSPEFPIDSIQVQLSNVDSKFAAAVSENGEISI 533
SFINLVNADFTAKQKGLRISEERVV D+SPEFPI SIQVQLSNVDSKF + VSE G+ISI
Sbjct: 479 SFINLVNADFTAKQKGLRISEERVVVDTSPEFPIHSIQVQLSNVDSKFGSGVSEGGDISI 538
Query: 534 EGKVKFGIPHLTRVGSFGVDASLEGNLILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGR 593
EG+VK+G PHLTRVGSF VD SLEGNLILCRQVDQPGMIG+VGNILGE NVNV+FMSVGR
Sbjct: 539 EGRVKYGKPHLTRVGSFSVDVSLEGNLILCRQVDQPGMIGQVGNILGEQNVNVSFMSVGR 598
Query: 594 TFRRNHGIMAIGVDEEPNQDSLKEIGKV 621
T +R IMAIGVDEEPNQ++LK+IG+V
Sbjct: 599 TVQRRKAIMAIGVDEEPNQETLKKIGEV 626
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224113315|ref|XP_002316453.1| predicted protein [Populus trichocarpa] gi|222865493|gb|EEF02624.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 962 bits (2487), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 489/626 (78%), Positives = 547/626 (87%), Gaps = 16/626 (2%)
Query: 7 SSSSIKPIFTTRSKSSNSSKSS---------LLSFLHNTKPKPISLKFSSHNSNYTTPPS 57
+SS+ KPIFT S + SS SS LLSFL NT PISLK S + ++ S
Sbjct: 2 ASSTTKPIFTPPSTTLTSSSSSSSQPPTRSSLLSFLRNTASTPISLKLSHSHPSFR---S 58
Query: 58 FTISNSLQT--ALETSELHVSKFQDDLNVQAVTPKPTILVSEKLGEAGLAILRSFGNVEC 115
+I N+ +T + ETS + +D +N Q KPTILVSEKLGEAGL +LR+FG+V+C
Sbjct: 59 LSIRNATKTIESAETSPVSKVGGKDTINSQET--KPTILVSEKLGEAGLELLRNFGDVDC 116
Query: 116 LYDLSPEALCEKISQCDALIVRSGTKVTRSVFEAANGKLKVVGRAGVGIDNVDLQAATEF 175
YDLS E LC+KI+ CDALIVRSGTKVTR VFEAA GKLKVVGRAGVGIDNVDLQAATEF
Sbjct: 117 SYDLSQEDLCKKIASCDALIVRSGTKVTRQVFEAAKGKLKVVGRAGVGIDNVDLQAATEF 176
Query: 176 GCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGKTLAVM 235
GCLVVNAP ANTVAAAEHGIALLASMARNV+QADAS+KAG+W R+KYVGVSLVGKTLAVM
Sbjct: 177 GCLVVNAPTANTVAAAEHGIALLASMARNVAQADASMKAGQWQRNKYVGVSLVGKTLAVM 236
Query: 236 GFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNP 295
GFGKVGSEVARRAKGLGM V+ HDPYAPAD+ARA+GVE+VSFDQA++TADFISLHMPL P
Sbjct: 237 GFGKVGSEVARRAKGLGMEVVTHDPYAPADRARAIGVEVVSFDQAISTADFISLHMPLTP 296
Query: 296 TTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEEPPAKDS 355
T K+FND++FAK+KKGVRI+NVARGGVIDEEALVRALDSG VAQAALDVFTEEPP KDS
Sbjct: 297 ATKKVFNDDSFAKVKKGVRIINVARGGVIDEEALVRALDSGKVAQAALDVFTEEPPPKDS 356
Query: 356 KLVQHENVTVTPHLGASTKEAQEGVAIEIAEAVVGALRGELSATAINAPMVPSEVLSELA 415
KLVQHE VTVTPHLGASTKEAQEGVAIEIAEAVVGAL+GEL+ATA+NAPMVP+EVLSELA
Sbjct: 357 KLVQHERVTVTPHLGASTKEAQEGVAIEIAEAVVGALKGELAATAVNAPMVPAEVLSELA 416
Query: 416 PYVVLAKKLGRLAVQLVSGGSGIKSVKLIYRSARDPDDLDTRILRAMITKGIIEPISASF 475
PYVVLA++LGRLAVQLV+GGSG+KS K++Y+SARDPDDLDTR+LRAMITKGIIEPIS SF
Sbjct: 417 PYVVLAERLGRLAVQLVAGGSGMKSAKVVYKSARDPDDLDTRLLRAMITKGIIEPISDSF 476
Query: 476 INLVNADFTAKQKGLRISEERVVADSSPEFPIDSIQVQLSNVDSKFAAAVSENGEISIEG 535
INLVNADFTAK+KGLRISEERVV D+SPE P+ SIQVQLSNVDSKF +AVS G+ISIEG
Sbjct: 477 INLVNADFTAKKKGLRISEERVVVDASPELPVFSIQVQLSNVDSKFGSAVSGGGDISIEG 536
Query: 536 KVKFGIPHLTRVGSFGVDASLEGNLILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTF 595
KVK GIPHLT+VGSF VD SLEGNLILCRQVDQPGMIG+VGNILGE NVNV+FMSVGRT
Sbjct: 537 KVKNGIPHLTQVGSFSVDVSLEGNLILCRQVDQPGMIGQVGNILGEQNVNVSFMSVGRTA 596
Query: 596 RRNHGIMAIGVDEEPNQDSLKEIGKV 621
RR + IMAIGVDEEPN +SLK+IG+V
Sbjct: 597 RRRNAIMAIGVDEEPNLESLKKIGEV 622
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357467711|ref|XP_003604140.1| Phosphoglycerate dehydrogenase [Medicago truncatula] gi|355505195|gb|AES86337.1| Phosphoglycerate dehydrogenase [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 948 bits (2451), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 482/626 (76%), Positives = 541/626 (86%), Gaps = 15/626 (2%)
Query: 3 ASSSSSSSI--KPIFTTRSKSSNSSKSSL---LSFLHNTKPK--PISLKFSSHNSNYTTP 55
+SSS + SI PIF++ S +S+ +KSS LSFL++ P ++K S NS
Sbjct: 2 SSSSCTKSILPSPIFSSSSSTSSETKSSKSSNLSFLNSNTFGIIPNNIKLSHANSQQRC- 60
Query: 56 PSFTISNSLQTALETSELHVSKFQDDLNVQAVTPKPTILVSEKLGEAGLAILRSFGNVEC 115
F +++ L+T +T + + +D N KPTILVSEKLGEAGL +LR GNVEC
Sbjct: 61 --FMVNSVLKTVDQTKQTNNVVSVNDEN-----EKPTILVSEKLGEAGLQVLRQLGNVEC 113
Query: 116 LYDLSPEALCEKISQCDALIVRSGTKVTRSVFEAANGKLKVVGRAGVGIDNVDLQAATEF 175
YDLSPE LC+KIS CDALIVRSGTKVTR VFEA GKLKVVGRAGVGIDNVDLQAATEF
Sbjct: 114 AYDLSPEDLCKKISSCDALIVRSGTKVTRKVFEAGKGKLKVVGRAGVGIDNVDLQAATEF 173
Query: 176 GCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGKTLAVM 235
GCLVVNAP ANT+AAAEHGIALLA+MARNVSQADAS+KAGKWLRSKYVGVS+VGKTLA+M
Sbjct: 174 GCLVVNAPTANTIAAAEHGIALLAAMARNVSQADASLKAGKWLRSKYVGVSMVGKTLAIM 233
Query: 236 GFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNP 295
GFGKVGSEVARRAKGLGMNVIAHDPYAPAD+ARAVGVELVSFDQA+ TADFISLHMPL P
Sbjct: 234 GFGKVGSEVARRAKGLGMNVIAHDPYAPADRARAVGVELVSFDQAITTADFISLHMPLTP 293
Query: 296 TTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEEPPAKDS 355
TT+K+FND TFAKMK GVRI+NVARGGVIDE+ALV+ALDSG+VAQAALDVFTEEPPAKDS
Sbjct: 294 TTNKVFNDNTFAKMKNGVRIINVARGGVIDEDALVKALDSGIVAQAALDVFTEEPPAKDS 353
Query: 356 KLVQHENVTVTPHLGASTKEAQEGVAIEIAEAVVGALRGELSATAINAPMVPSEVLSELA 415
KLVQHENV TPHLGASTKEAQEGVAIEIAEAVVGAL GELSATA+NAPMV EVLSELA
Sbjct: 354 KLVQHENVIATPHLGASTKEAQEGVAIEIAEAVVGALNGELSATAVNAPMVAPEVLSELA 413
Query: 416 PYVVLAKKLGRLAVQLVSGGSGIKSVKLIYRSARDPDDLDTRILRAMITKGIIEPISASF 475
PYVVLA+KLGRLAVQLVSGGSGI+SVK++YRSAR PDDLDTR+LRAMITKGIIEPIS +
Sbjct: 414 PYVVLAEKLGRLAVQLVSGGSGIQSVKVVYRSARGPDDLDTRLLRAMITKGIIEPISNTI 473
Query: 476 INLVNADFTAKQKGLRISEERVVADSSPEFPIDSIQVQLSNVDSKFAAAVSENGEISIEG 535
+NLVNAD+ AKQKGLRISEERVV DSSPE P++SIQ+Q+SNV+SKFA+AVSE G+ISI+G
Sbjct: 474 VNLVNADYIAKQKGLRISEERVVVDSSPELPVESIQIQISNVESKFASAVSETGQISIDG 533
Query: 536 KVKFGIPHLTRVGSFGVDASLEGNLILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTF 595
KVK+G PHLT VGSF VD SLEGNLILCRQ+DQPGMIG VGNILGE NVNV+FMSVGRT
Sbjct: 534 KVKYGTPHLTCVGSFAVDVSLEGNLILCRQIDQPGMIGTVGNILGEKNVNVSFMSVGRTS 593
Query: 596 RRNHGIMAIGVDEEPNQDSLKEIGKV 621
RR +MAIGVDEEPN+++L+ IG V
Sbjct: 594 RRKKALMAIGVDEEPNKEALENIGAV 619
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356521735|ref|XP_003529507.1| PREDICTED: d-3-phosphoglycerate dehydrogenase, chloroplastic-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 948 bits (2451), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 480/621 (77%), Positives = 536/621 (86%), Gaps = 15/621 (2%)
Query: 6 SSSSSIKPIFTTRSKSSNSSKSSLLSFLH--NTKPKPISLKFS--SHNSNYTTPPSFTIS 61
+SS+ KPIF + + SKS L +H T PKPI + SH S S ++
Sbjct: 2 ASSACTKPIFPS---AFTVSKSKLSRHVHVSFTSPKPIYYHYRKLSHASQR----SLVVN 54
Query: 62 NSLQTALET-SELHVSKFQDDLNVQAVTPKPTILVSEKLGEAGLAILRSFGNVECLYDLS 120
+ L+T T + L S +D V ++ KPTILVSEKLGEAGL +LR G+VEC Y+LS
Sbjct: 55 SVLKTVDPTQTSLRRSNSED---VGSLGEKPTILVSEKLGEAGLQVLRGVGHVECAYELS 111
Query: 121 PEALCEKISQCDALIVRSGTKVTRSVFEAANGKLKVVGRAGVGIDNVDLQAATEFGCLVV 180
E LC KIS CDALIVRSGTKVTR VFEA G+LKVVGRAGVGIDNVDLQAATEFGCLVV
Sbjct: 112 QEELCTKISCCDALIVRSGTKVTREVFEAGKGRLKVVGRAGVGIDNVDLQAATEFGCLVV 171
Query: 181 NAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGKTLAVMGFGKV 240
NAP ANT+AAAEHGIALLA+MARNV+QADAS KAGKW RSKYVGVS+VGKTLAVMGFGKV
Sbjct: 172 NAPTANTIAAAEHGIALLAAMARNVAQADASTKAGKWQRSKYVGVSMVGKTLAVMGFGKV 231
Query: 241 GSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKI 300
GSEVARRAKGLGM+VIAHDPYAPAD+ARA+GV+LVSFD A+ATADFISLHMPL PTT+KI
Sbjct: 232 GSEVARRAKGLGMHVIAHDPYAPADRARAIGVDLVSFDHAIATADFISLHMPLTPTTNKI 291
Query: 301 FNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEEPPAKDSKLVQH 360
FND TFAKMKKGVRIVNVARGGVIDE+ALVRALD+G+VAQAALDVFTEEPP+KDSKLVQH
Sbjct: 292 FNDNTFAKMKKGVRIVNVARGGVIDEDALVRALDTGIVAQAALDVFTEEPPSKDSKLVQH 351
Query: 361 ENVTVTPHLGASTKEAQEGVAIEIAEAVVGALRGELSATAINAPMVPSEVLSELAPYVVL 420
ENVTVTPHLGASTKEAQEGVAIEIAEAV+GAL+GELSATA+NAPMV EVLSELAPYVVL
Sbjct: 352 ENVTVTPHLGASTKEAQEGVAIEIAEAVLGALKGELSATAVNAPMVAPEVLSELAPYVVL 411
Query: 421 AKKLGRLAVQLVSGGSGIKSVKLIYRSARDPDDLDTRILRAMITKGIIEPISASFINLVN 480
A+KLGRLAVQLV GGSGIKSVK++YRSAR PDDLDTR+LRAM+TKG+IEPIS + +NLVN
Sbjct: 412 AEKLGRLAVQLVCGGSGIKSVKIVYRSARGPDDLDTRLLRAMVTKGLIEPISNTIVNLVN 471
Query: 481 ADFTAKQKGLRISEERVVADSSPEFPIDSIQVQLSNVDSKFAAAVSENGEISIEGKVKFG 540
ADF AKQKGLRISEERVV DSSPE P+DSIQVQ+S+VDSKFA+AVSE+G+ISI+G+VKFG
Sbjct: 472 ADFIAKQKGLRISEERVVVDSSPEMPVDSIQVQISSVDSKFASAVSESGQISIDGRVKFG 531
Query: 541 IPHLTRVGSFGVDASLEGNLILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHG 600
PHLT VGSF VD SLEGNLILCRQVDQPGMIG+VGNILGE NVNV+FMSVGRT RRN
Sbjct: 532 EPHLTCVGSFDVDVSLEGNLILCRQVDQPGMIGRVGNILGEQNVNVSFMSVGRTSRRNKA 591
Query: 601 IMAIGVDEEPNQDSLKEIGKV 621
IMAIGVDEEPN+++L IG V
Sbjct: 592 IMAIGVDEEPNKEALDNIGAV 612
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356526328|ref|XP_003531770.1| PREDICTED: d-3-phosphoglycerate dehydrogenase, chloroplastic-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 947 bits (2448), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 475/618 (76%), Positives = 530/618 (85%), Gaps = 10/618 (1%)
Query: 5 SSSSSSIKPI-FTTRSKSSNSSKSSLLSFLHNTKPKPISLKFSSHNSNYTTPPSFTISNS 63
+SS + KPI F + S S +SF++ T PI K S S ++N
Sbjct: 2 ASSRACTKPIIFLSAFTKSKFSHQYHVSFINTTSHIPIYPKLSQQRS-------LVVNNV 54
Query: 64 LQTALETSELHVSKFQDDLNVQAVTPKPTILVSEKLGEAGLAILRSFGNVECLYDLSPEA 123
L+T T S ++ ++ KPTILVSE+LGEAGL +LR G+VEC Y+LS E
Sbjct: 55 LKTVEPTESSLRSSNSEEFG--SLGEKPTILVSERLGEAGLQVLRGVGHVECAYELSQEE 112
Query: 124 LCEKISQCDALIVRSGTKVTRSVFEAANGKLKVVGRAGVGIDNVDLQAATEFGCLVVNAP 183
LC KIS CDALIVRSGTKVTR VFEAA G+LKVVGRAGVGIDNVDLQAATEFGCLVVNAP
Sbjct: 113 LCTKISCCDALIVRSGTKVTREVFEAAKGRLKVVGRAGVGIDNVDLQAATEFGCLVVNAP 172
Query: 184 IANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSE 243
ANT+AAAEHGIALLA+MARNV+QADAS KAGKW RSKYVGVS+VGKTLAVMGFGKVGSE
Sbjct: 173 TANTIAAAEHGIALLAAMARNVAQADASTKAGKWQRSKYVGVSMVGKTLAVMGFGKVGSE 232
Query: 244 VARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFND 303
VARRAKGLGM+VIAHDPYAPAD+ARA+GV+LVSFDQA+ TADFISLHMPL PTT+KIFND
Sbjct: 233 VARRAKGLGMHVIAHDPYAPADRARAIGVDLVSFDQAITTADFISLHMPLTPTTNKIFND 292
Query: 304 ETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENV 363
TFAKMKKGVRIVNVARGGVIDE+ALVRALDSG+VAQAALDVFTEEPP+KDSKLVQHENV
Sbjct: 293 NTFAKMKKGVRIVNVARGGVIDEDALVRALDSGIVAQAALDVFTEEPPSKDSKLVQHENV 352
Query: 364 TVTPHLGASTKEAQEGVAIEIAEAVVGALRGELSATAINAPMVPSEVLSELAPYVVLAKK 423
TVTPHLGASTKEAQEGVAIEIAEAV+GAL+GELSATA+NAPMV EVLSELAPYVVLA+K
Sbjct: 353 TVTPHLGASTKEAQEGVAIEIAEAVLGALKGELSATAVNAPMVAPEVLSELAPYVVLAEK 412
Query: 424 LGRLAVQLVSGGSGIKSVKLIYRSARDPDDLDTRILRAMITKGIIEPISASFINLVNADF 483
LGRLAVQLV GGSGIKSVK++YRSAR PDDLDTR+LRAM+TKG+IEPIS + +NLVNADF
Sbjct: 413 LGRLAVQLVCGGSGIKSVKVVYRSARGPDDLDTRLLRAMVTKGLIEPISNTIVNLVNADF 472
Query: 484 TAKQKGLRISEERVVADSSPEFPIDSIQVQLSNVDSKFAAAVSENGEISIEGKVKFGIPH 543
AKQKGLRISEERVV DSSPE P+DSIQVQ+S+VDSKFA+AVSE+G+ISI+G+VKFG PH
Sbjct: 473 IAKQKGLRISEERVVVDSSPELPVDSIQVQISSVDSKFASAVSESGQISIDGRVKFGEPH 532
Query: 544 LTRVGSFGVDASLEGNLILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMA 603
LT VGSF VD SLEGNLILCRQVDQPGMIG+VGNILGE NVNV+FMSVGRT RRN IMA
Sbjct: 533 LTCVGSFDVDVSLEGNLILCRQVDQPGMIGRVGNILGEQNVNVSFMSVGRTSRRNKAIMA 592
Query: 604 IGVDEEPNQDSLKEIGKV 621
IGVDEEPN+++L IG V
Sbjct: 593 IGVDEEPNKEALDNIGAV 610
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225443272|ref|XP_002273552.1| PREDICTED: d-3-phosphoglycerate dehydrogenase, chloroplastic-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 939 bits (2428), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 459/532 (86%), Positives = 500/532 (93%)
Query: 90 KPTILVSEKLGEAGLAILRSFGNVECLYDLSPEALCEKISQCDALIVRSGTKVTRSVFEA 149
KPTILVSEKLGEAGL +LR FG VEC YDLS E LC+KIS CDALIVRSGTKVTR+VFEA
Sbjct: 82 KPTILVSEKLGEAGLEVLREFGEVECSYDLSQEDLCKKISLCDALIVRSGTKVTRAVFEA 141
Query: 150 ANGKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQAD 209
A G+LKVVGRAGVGIDNVDLQAATEFGCLVVNAP ANT+AAAEHGIALLA+MARNV+QAD
Sbjct: 142 AKGRLKVVGRAGVGIDNVDLQAATEFGCLVVNAPTANTIAAAEHGIALLAAMARNVAQAD 201
Query: 210 ASIKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARA 269
AS+KAGKW R+KYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGM+VIAHDPYAPAD+ARA
Sbjct: 202 ASMKAGKWQRNKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMHVIAHDPYAPADRARA 261
Query: 270 VGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEAL 329
GV+LVSFD A++TADFISLHMPL PTT KIFNDETFAK+KKGVRI+NVARGGVIDE+AL
Sbjct: 262 AGVDLVSFDLAISTADFISLHMPLTPTTKKIFNDETFAKVKKGVRIINVARGGVIDEDAL 321
Query: 330 VRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKEAQEGVAIEIAEAVV 389
VRALDSG VAQAALDVFTEEPP KDSKLVQHENVTVTPHLGASTKEAQEGVAIEIAEAVV
Sbjct: 322 VRALDSGAVAQAALDVFTEEPPPKDSKLVQHENVTVTPHLGASTKEAQEGVAIEIAEAVV 381
Query: 390 GALRGELSATAINAPMVPSEVLSELAPYVVLAKKLGRLAVQLVSGGSGIKSVKLIYRSAR 449
GALRGELSATA+NAPMVP EV+SEL+PYVVLA+KLGRLAVQLV+GGSGIKSVK++Y++AR
Sbjct: 382 GALRGELSATAVNAPMVPPEVISELSPYVVLAEKLGRLAVQLVAGGSGIKSVKVVYKTAR 441
Query: 450 DPDDLDTRILRAMITKGIIEPISASFINLVNADFTAKQKGLRISEERVVADSSPEFPIDS 509
DPDDLDTR+LRAM+TKGIIEPIS+SFINLVNADFTAKQKGLRISEERV DSSPE P++S
Sbjct: 442 DPDDLDTRLLRAMVTKGIIEPISSSFINLVNADFTAKQKGLRISEERVSIDSSPENPVES 501
Query: 510 IQVQLSNVDSKFAAAVSENGEISIEGKVKFGIPHLTRVGSFGVDASLEGNLILCRQVDQP 569
IQVQ+SNVDSKFA+AVSEN ISIEGKVK GIP LT VGSF VD SLEGNLILCRQVDQP
Sbjct: 502 IQVQISNVDSKFASAVSENEYISIEGKVKDGIPRLTCVGSFSVDVSLEGNLILCRQVDQP 561
Query: 570 GMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDEEPNQDSLKEIGKV 621
GMIG+VGNILGE NVNV+FMSVGRT +R IMAIGVDEEP++D+LK+IG+V
Sbjct: 562 GMIGRVGNILGECNVNVSFMSVGRTVKRTRAIMAIGVDEEPDKDTLKKIGEV 613
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255568067|ref|XP_002525010.1| d-3-phosphoglycerate dehydrogenase, putative [Ricinus communis] gi|223535718|gb|EEF37382.1| d-3-phosphoglycerate dehydrogenase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 937 bits (2421), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 468/626 (74%), Positives = 542/626 (86%), Gaps = 12/626 (1%)
Query: 3 ASSSSSSSIKPIFTTRSKSSNSSKSS---LLSFLHN--TKPKPISLKFS-SHNSNYTTPP 56
ASSS++S + P T S ++SS S L+ F HN T PISLK S NS+ ++
Sbjct: 2 ASSSANSILTPSLITPSSQASSSSQSRSFLVPFSHNNFTSSTPISLKVSLGRNSSLSS-- 59
Query: 57 SFTISNSLQTALET-SELHVSKFQDDLNVQAVTPKPTILVSEKLGEAGLAILRSFGNVEC 115
+ N++ TA+E+ + + S+ + + P PTILVSEKLG+AGL +LR +GN+EC
Sbjct: 60 ---VKNAISTAVESATPVSSSEKIKKEDFRETKPTPTILVSEKLGDAGLKLLREYGNLEC 116
Query: 116 LYDLSPEALCEKISQCDALIVRSGTKVTRSVFEAANGKLKVVGRAGVGIDNVDLQAATEF 175
YDLS E LC+KI+ CDALIVRSGTKV+R VFEAA G+LKVVGRAGVGIDNVDL AATEF
Sbjct: 117 CYDLSKEDLCKKIASCDALIVRSGTKVSREVFEAAKGRLKVVGRAGVGIDNVDLGAATEF 176
Query: 176 GCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGKTLAVM 235
GCLVVNAP ANTVAAAEHGIALLA+M+RNV+QADAS+KAG+W R+KYVGVS+VGKTLAVM
Sbjct: 177 GCLVVNAPTANTVAAAEHGIALLAAMSRNVAQADASMKAGEWQRNKYVGVSIVGKTLAVM 236
Query: 236 GFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNP 295
GFGKVG+EVARRAKGLGMNVIAHDPYAPAD+ARA+GVELVSFDQA+A+ADF+SLHMPL P
Sbjct: 237 GFGKVGTEVARRAKGLGMNVIAHDPYAPADRARAIGVELVSFDQAIASADFVSLHMPLTP 296
Query: 296 TTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEEPPAKDS 355
T IFND+TF+KMK GVRI+NVARGGVIDE+ALVRALDSG VAQAALDVF+EEPP++D
Sbjct: 297 ATQNIFNDDTFSKMKNGVRIINVARGGVIDEDALVRALDSGKVAQAALDVFSEEPPSRDG 356
Query: 356 KLVQHENVTVTPHLGASTKEAQEGVAIEIAEAVVGALRGELSATAINAPMVPSEVLSELA 415
KLVQH+NVT TPHLGASTKEAQEGVAIEIAEAV+GAL GELSATA+NAPMVP+EVLSELA
Sbjct: 357 KLVQHKNVTATPHLGASTKEAQEGVAIEIAEAVIGALEGELSATAVNAPMVPAEVLSELA 416
Query: 416 PYVVLAKKLGRLAVQLVSGGSGIKSVKLIYRSARDPDDLDTRILRAMITKGIIEPISASF 475
PYV+LA+KLGRLAVQLV+GGSGIKSVK++Y+SARDPDDLDTR+LRAMITKGIIEPIS S
Sbjct: 417 PYVILAEKLGRLAVQLVAGGSGIKSVKVLYKSARDPDDLDTRLLRAMITKGIIEPISTSI 476
Query: 476 INLVNADFTAKQKGLRISEERVVADSSPEFPIDSIQVQLSNVDSKFAAAVSENGEISIEG 535
INLVNADF AK+KGLRI EER + D+SPE P+ S+QVQ+SNVDSKFA+AVS+ G+ISIEG
Sbjct: 477 INLVNADFIAKEKGLRIREEREMVDTSPESPVHSLQVQISNVDSKFASAVSDTGDISIEG 536
Query: 536 KVKFGIPHLTRVGSFGVDASLEGNLILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTF 595
+VK+GIPHLTRVGSF VD SLEGNLILCRQVDQPGMIG+VGNILGEHNVNV+FMSVGRT
Sbjct: 537 RVKYGIPHLTRVGSFAVDVSLEGNLILCRQVDQPGMIGRVGNILGEHNVNVSFMSVGRTV 596
Query: 596 RRNHGIMAIGVDEEPNQDSLKEIGKV 621
RRN IMAIGVDEEP +L +IG+V
Sbjct: 597 RRNQAIMAIGVDEEPQGQALVKIGEV 622
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449461667|ref|XP_004148563.1| PREDICTED: d-3-phosphoglycerate dehydrogenase, chloroplastic-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 936 bits (2420), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 478/624 (76%), Positives = 539/624 (86%), Gaps = 7/624 (1%)
Query: 1 MAASSSSSSSIKPIFTTRSKSSNSSKSSLLSFLHNT---KPKPISLKFSSHNSNYTTPPS 57
MA+SSS+S P FT+ ++S +S K LLSF ++ P+P L S +S+ + S
Sbjct: 1 MASSSSNSLFSSPHFTSFNRSFHS-KPPLLSFSTSSVSLNPRP--LHSFSSSSSSSNRCS 57
Query: 58 FTISNSLQTALETSELHVSKFQDDLNVQAVTPKPTILVSEKLGEAGLAILRSFGNVECLY 117
F S+ LE+S VS+ D L+ + + TILV+EKLGEAGL +LRSFGNV C Y
Sbjct: 58 FIPLRSVLKTLESSAF-VSQNSDLLDPTSPNDRSTILVAEKLGEAGLELLRSFGNVVCAY 116
Query: 118 DLSPEALCEKISQCDALIVRSGTKVTRSVFEAANGKLKVVGRAGVGIDNVDLQAATEFGC 177
DLSPE LC KIS CDALIVRSGTKV R VFEAA G+LKVVGRAGVGIDNVDLQAATEFGC
Sbjct: 117 DLSPEELCAKISSCDALIVRSGTKVNRQVFEAAKGRLKVVGRAGVGIDNVDLQAATEFGC 176
Query: 178 LVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGKTLAVMGF 237
LVVNAP ANT+AAAEHGIALL SMARNV+QADAS+KAGKW R+KYVGVSLVGKTLAVMGF
Sbjct: 177 LVVNAPTANTIAAAEHGIALLTSMARNVAQADASMKAGKWERNKYVGVSLVGKTLAVMGF 236
Query: 238 GKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTT 297
GKVGSEVARRAKGLGM VIAHDPYAP D+ARA+GVELVSF+QA++TADFISLHMPL PTT
Sbjct: 237 GKVGSEVARRAKGLGMQVIAHDPYAPVDRARAIGVELVSFNQAISTADFISLHMPLTPTT 296
Query: 298 SKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEEPPAKDSKL 357
SK+FND+TF MKKG R++NVARGGVIDE+ALVRALDSG VAQAALDVF EEPP KDSKL
Sbjct: 297 SKVFNDDTFGLMKKGARLINVARGGVIDEDALVRALDSGAVAQAALDVFVEEPPPKDSKL 356
Query: 358 VQHENVTVTPHLGASTKEAQEGVAIEIAEAVVGALRGELSATAINAPMVPSEVLSELAPY 417
VQH+NVTVTPHLGASTKEAQEGVAIEIAEAVVGAL GELSATA+NAPMVP EVLSELAPY
Sbjct: 357 VQHKNVTVTPHLGASTKEAQEGVAIEIAEAVVGALNGELSATAVNAPMVPPEVLSELAPY 416
Query: 418 VVLAKKLGRLAVQLVSGGSGIKSVKLIYRSARDPDDLDTRILRAMITKGIIEPISASFIN 477
VVLA+KLGRLAVQLV+GGSGIKSVK++YRS R PDDLDTR+LRAMITKGIIEPIS S IN
Sbjct: 417 VVLAEKLGRLAVQLVAGGSGIKSVKVVYRSGRAPDDLDTRLLRAMITKGIIEPISDSHIN 476
Query: 478 LVNADFTAKQKGLRISEERVVADSSPEFPIDSIQVQLSNVDSKFAAAVSENGEISIEGKV 537
LVNADFTAKQKGLRISEERV+ D+ PEFP++SIQ+ +S V+SKFA+AV+E GE+ IEGKV
Sbjct: 477 LVNADFTAKQKGLRISEERVLVDAPPEFPVESIQIVVSEVESKFASAVTEKGEVVIEGKV 536
Query: 538 KFGIPHLTRVGSFGVDASLEGNLILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRR 597
K+G+PHL RVGSF VD SLEGNLILCRQVDQPGMIG+VGNILGE+NVNVNFMSVGRT RR
Sbjct: 537 KYGVPHLRRVGSFDVDVSLEGNLILCRQVDQPGMIGQVGNILGENNVNVNFMSVGRTLRR 596
Query: 598 NHGIMAIGVDEEPNQDSLKEIGKV 621
IMAIG+DEEPN+D+LK+IG+V
Sbjct: 597 KRAIMAIGMDEEPNKDTLKKIGQV 620
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449533397|ref|XP_004173662.1| PREDICTED: d-3-phosphoglycerate dehydrogenase, chloroplastic-like, partial [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 930 bits (2403), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 457/565 (80%), Positives = 506/565 (89%), Gaps = 1/565 (0%)
Query: 57 SFTISNSLQTALETSELHVSKFQDDLNVQAVTPKPTILVSEKLGEAGLAILRSFGNVECL 116
SF S+ LE+S VS+ D L+ + + TILV+EKLGEAGL +LRSFGNV C
Sbjct: 20 SFIPLRSVLKTLESSAF-VSQNSDLLDPTSPNDRSTILVAEKLGEAGLELLRSFGNVVCA 78
Query: 117 YDLSPEALCEKISQCDALIVRSGTKVTRSVFEAANGKLKVVGRAGVGIDNVDLQAATEFG 176
YDLSPE LC KIS CDALIVRSGTKV R VFEAA G+LKVVGRAGVGIDNVDLQAATEFG
Sbjct: 79 YDLSPEELCAKISSCDALIVRSGTKVNRQVFEAAKGRLKVVGRAGVGIDNVDLQAATEFG 138
Query: 177 CLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGKTLAVMG 236
CLVVNAP ANT+AAAEHGIALL SMARNV+QADAS+KAGKW R+KYVGVSLVGKTLAVMG
Sbjct: 139 CLVVNAPTANTIAAAEHGIALLTSMARNVAQADASMKAGKWERNKYVGVSLVGKTLAVMG 198
Query: 237 FGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPT 296
FGKVGSEVARRAKGLGM VIAHDPYAP D+ARA+GVELVSF+QA++TADFISLHMPL PT
Sbjct: 199 FGKVGSEVARRAKGLGMQVIAHDPYAPVDRARAIGVELVSFNQAISTADFISLHMPLTPT 258
Query: 297 TSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEEPPAKDSK 356
TSK+FND+TF MKKG R++NVARGGVIDE+ALVRALDSG VAQAALDVF EEPP KDSK
Sbjct: 259 TSKVFNDDTFGLMKKGARLINVARGGVIDEDALVRALDSGAVAQAALDVFVEEPPPKDSK 318
Query: 357 LVQHENVTVTPHLGASTKEAQEGVAIEIAEAVVGALRGELSATAINAPMVPSEVLSELAP 416
LVQH+NVTVTPHLGASTKEAQEGVAIEIAEAVVGAL GELSATA+NAPMVP EVLSELAP
Sbjct: 319 LVQHKNVTVTPHLGASTKEAQEGVAIEIAEAVVGALNGELSATAVNAPMVPPEVLSELAP 378
Query: 417 YVVLAKKLGRLAVQLVSGGSGIKSVKLIYRSARDPDDLDTRILRAMITKGIIEPISASFI 476
YVVLA+KLGRLAVQLV+GGSGIKSVK++YRS R PDDLDTR+LRAMITKGIIEPIS S I
Sbjct: 379 YVVLAEKLGRLAVQLVAGGSGIKSVKVVYRSGRAPDDLDTRLLRAMITKGIIEPISDSHI 438
Query: 477 NLVNADFTAKQKGLRISEERVVADSSPEFPIDSIQVQLSNVDSKFAAAVSENGEISIEGK 536
NLVNADFTAKQKGLRISEERV+ D+ PEFP++SIQ+ +S V+SKFA+AV+E GE+ IEGK
Sbjct: 439 NLVNADFTAKQKGLRISEERVLVDAPPEFPVESIQIVVSEVESKFASAVTEKGEVVIEGK 498
Query: 537 VKFGIPHLTRVGSFGVDASLEGNLILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFR 596
VK+G+PHL RVGSF VD SLEGNLILCRQVDQPGMIG+VGNILGE+NVNVNFMSVGRT R
Sbjct: 499 VKYGVPHLRRVGSFDVDVSLEGNLILCRQVDQPGMIGQVGNILGENNVNVNFMSVGRTLR 558
Query: 597 RNHGIMAIGVDEEPNQDSLKEIGKV 621
R IMAIG+DEEPN+D+LK+IG+V
Sbjct: 559 RKRAIMAIGMDEEPNKDTLKKIGQV 583
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|18394525|ref|NP_564034.1| D-3-phosphoglycerate dehydrogenase [Arabidopsis thaliana] gi|3122858|sp|O04130.2|SERA_ARATH RecName: Full=D-3-phosphoglycerate dehydrogenase, chloroplastic; Short=3-PGDH; Flags: Precursor gi|9802747|gb|AAF99816.1|AC034257_8 D-3-phosphoglycerate dehydrogenase [Arabidopsis thaliana] gi|2189964|dbj|BAA20405.1| Phosphoglycerate dehydrogenase [Arabidopsis thaliana] gi|2804258|dbj|BAA24440.1| phosphoglycerate dehydrogenase [Arabidopsis thaliana] gi|15215740|gb|AAK91415.1| At1g17740/F11A6_16 [Arabidopsis thaliana] gi|20466083|gb|AAM19963.1| At1g17740/F11A6_16 [Arabidopsis thaliana] gi|21554130|gb|AAM63210.1| Phosphoglycerate dehydrogenase-like protein [Arabidopsis thaliana] gi|332191509|gb|AEE29630.1| D-3-phosphoglycerate dehydrogenase [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 919 bits (2375), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 460/627 (73%), Positives = 528/627 (84%), Gaps = 23/627 (3%)
Query: 3 ASSSSSSSIKPI---FTTRSKSSNSSKSSLLSFLHNTKPKPISLKFSSHNSNYTTPPSFT 59
A SSS SS+K + +T+ S S +S + L +FLH Y T T
Sbjct: 2 AFSSSCSSVKAVNSRWTSPSPSPSSRFAVLPAFLHR---------------RYATSVKLT 46
Query: 60 -ISNSLQTALETSELHVSKFQ----DDLNVQAVTPKPTILVSEKLGEAGLAILRSFGNVE 114
IS +L+T +T+ ++F D PKP ILV+EKLGEAG+ +LR FG+V+
Sbjct: 47 AISAALKTVEQTTLTEDNRFSTVGSDSDEYNPTLPKPRILVTEKLGEAGVNLLREFGDVD 106
Query: 115 CLYDLSPEALCEKISQCDALIVRSGTKVTRSVFEAANGKLKVVGRAGVGIDNVDLQAATE 174
C YDLSPE L +K+++ DALIVRSGTKVTR VFEAA G+LKVVGRAGVGIDNVDLQAATE
Sbjct: 107 CSYDLSPEDLKKKVAESDALIVRSGTKVTREVFEAAKGRLKVVGRAGVGIDNVDLQAATE 166
Query: 175 FGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGKTLAV 234
GCLVVNAP ANTVAAAEHGIALLASMARNV+QADASIKAGKW RSKYVGVSLVGKTLAV
Sbjct: 167 HGCLVVNAPTANTVAAAEHGIALLASMARNVAQADASIKAGKWERSKYVGVSLVGKTLAV 226
Query: 235 MGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLN 294
MGFGKVG+EVARRAKGLGM VI+HDPYAPAD+ARA+GV+LVSFDQA++TADF+SLHMPL
Sbjct: 227 MGFGKVGTEVARRAKGLGMTVISHDPYAPADRARALGVDLVSFDQAISTADFVSLHMPLT 286
Query: 295 PTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEEPPAKD 354
P T K+FNDETF+KMKKGVR++NVARGGVIDE+ALVRALD+G+VAQAALDVF EEPP+KD
Sbjct: 287 PATKKVFNDETFSKMKKGVRLINVARGGVIDEDALVRALDAGIVAQAALDVFCEEPPSKD 346
Query: 355 SKLVQHENVTVTPHLGASTKEAQEGVAIEIAEAVVGALRGELSATAINAPMVPSEVLSEL 414
S+L+QHENVTVTPHLGASTKEAQEGVAIEIAEAV GAL+GELSATA+NAPMV EVLSEL
Sbjct: 347 SRLIQHENVTVTPHLGASTKEAQEGVAIEIAEAVAGALKGELSATAVNAPMVAPEVLSEL 406
Query: 415 APYVVLAKKLGRLAVQLVSGGSGIKSVKLIYRSARDPDDLDTRILRAMITKGIIEPISAS 474
PY+VLA+KLGRLAVQL SGG G++S++++YRSARD DDLDTR+LRAMITKGIIEPIS S
Sbjct: 407 TPYIVLAEKLGRLAVQLASGGKGVQSIRVVYRSARDRDDLDTRLLRAMITKGIIEPISDS 466
Query: 475 FINLVNADFTAKQKGLRISEERVVADSSPEFPIDSIQVQLSNVDSKFAAAVSENGEISIE 534
++NLVNADF AKQKGLRISEER+V DSSPE+P+DSIQVQ+ NV+S FA AVS+ G+ISIE
Sbjct: 467 YVNLVNADFIAKQKGLRISEERMVVDSSPEYPVDSIQVQILNVESNFAGAVSDAGDISIE 526
Query: 535 GKVKFGIPHLTRVGSFGVDASLEGNLILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRT 594
GKVK+G+PHLT VGSFGVD SLEGNLILCRQVDQPGMIG+VGNILGE NVNVNFMSVGRT
Sbjct: 527 GKVKYGVPHLTCVGSFGVDVSLEGNLILCRQVDQPGMIGQVGNILGEQNVNVNFMSVGRT 586
Query: 595 FRRNHGIMAIGVDEEPNQDSLKEIGKV 621
R IMAIGVDEEP+ +L+ IG V
Sbjct: 587 VLRKQAIMAIGVDEEPDNKTLERIGGV 613
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 628 | ||||||
| TAIR|locus:2124266 | 603 | EDA9 "embryo sac development a | 0.847 | 0.882 | 0.75 | 8.9e-212 | |
| TAIR|locus:2090649 | 588 | AT3G19480 [Arabidopsis thalian | 0.847 | 0.904 | 0.723 | 3e-204 | |
| TIGR_CMR|DET_0599 | 526 | DET_0599 "D-3-phosphoglycerate | 0.794 | 0.948 | 0.375 | 3.2e-88 | |
| TIGR_CMR|CHY_2698 | 525 | CHY_2698 "D-3-phosphoglycerate | 0.686 | 0.820 | 0.407 | 1.5e-83 | |
| TIGR_CMR|GSU_1198 | 542 | GSU_1198 "D-3-phosphoglycerate | 0.807 | 0.935 | 0.353 | 6e-80 | |
| TIGR_CMR|SPO_3355 | 531 | SPO_3355 "D-3-phosphoglycerate | 0.692 | 0.819 | 0.402 | 1.7e-75 | |
| UNIPROTKB|E1C7Y3 | 525 | PHGDH "Uncharacterized protein | 0.679 | 0.813 | 0.393 | 6.5e-74 | |
| RGD|61987 | 533 | Phgdh "phosphoglycerate dehydr | 0.630 | 0.742 | 0.415 | 3.6e-73 | |
| MGI|MGI:1355330 | 533 | Phgdh "3-phosphoglycerate dehy | 0.630 | 0.742 | 0.407 | 1.2e-72 | |
| UNIPROTKB|O43175 | 533 | PHGDH "D-3-phosphoglycerate de | 0.630 | 0.742 | 0.412 | 2e-72 |
| TAIR|locus:2124266 EDA9 "embryo sac development arrest 9" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2047 (725.6 bits), Expect = 8.9e-212, P = 8.9e-212
Identities = 399/532 (75%), Positives = 467/532 (87%)
Query: 90 KPTILVSEKLGEAGLAILRSFGNVECLYDLSPEALCEKISQCDALIVRSGTKVTRSVFEA 149
KPTILV+EKLG+AG+ +L NV+C Y+++PE L KIS CDALIVRSGTKV R VFE+
Sbjct: 61 KPTILVAEKLGDAGIKLLEDVANVDCSYNMTPEELNIKISLCDALIVRSGTKVGREVFES 120
Query: 150 ANGKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQAD 209
++G+LKVVGRAGVGIDNVDL AATEFGCLVVNAP ANT+AAAEHGIAL+A+MARNV+QAD
Sbjct: 121 SHGRLKVVGRAGVGIDNVDLSAATEFGCLVVNAPTANTIAAAEHGIALMAAMARNVAQAD 180
Query: 210 ASIKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARA 269
AS+KAG+W R+KYVGVSLVGKTLAV+GFGKVG+EVARRAKGLGM VIAHDPYAPAD+A A
Sbjct: 181 ASVKAGEWKRNKYVGVSLVGKTLAVLGFGKVGTEVARRAKGLGMRVIAHDPYAPADRAHA 240
Query: 270 VGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEAL 329
+GV+LVSFD+ALATADFISLHMPL PTTSKI NDETFAKMKKGVRIVNVARGGVIDE+AL
Sbjct: 241 IGVDLVSFDEALATADFISLHMPLTPTTSKILNDETFAKMKKGVRIVNVARGGVIDEDAL 300
Query: 330 VRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKXXXXXXXXXXXXXXX 389
VRALD+G+VAQAALDVFT+EPPAKDSKLVQHE VTVTPHLGAST
Sbjct: 301 VRALDAGIVAQAALDVFTKEPPAKDSKLVQHERVTVTPHLGASTMEAQEGVAIEIAEAVV 360
Query: 390 XXLRGELSATAINAPMVPSEVLSELAPYVVLAKKLGRLAVQLVSGGSGIKSVKLIYRSAR 449
L GEL+ATA+NAPMV +EVL+EL PYVVLA+KLGRLAVQLV+GGSG+K+ K+ Y SAR
Sbjct: 361 GALNGELAATAVNAPMVSAEVLTELKPYVVLAEKLGRLAVQLVAGGSGVKNAKITYASAR 420
Query: 450 DPDDLDTRILRAMITKGIIEPISASFINLVNADFTAKQKGLRISEERVVADSSPEFPIDS 509
DDLDTR+LRAMITKGIIEPIS ++NLVNADFTAKQ+GLR+SEERV+ D SPE P+++
Sbjct: 421 ATDDLDTRLLRAMITKGIIEPISDVYVNLVNADFTAKQRGLRLSEERVLLDGSPESPLET 480
Query: 510 IQVQLSNVDSKFAAAVSENGEISIEGKVKFGIPHLTRVGSFGVDASLEGNLILCRQVDQP 569
I VQLSNV+SKFA+++SE+GE+ +EGKVK G+PHLT+VGSF VD +LEG++ILCRQVDQP
Sbjct: 481 ITVQLSNVESKFASSLSESGEVKVEGKVKDGVPHLTKVGSFEVDVTLEGSIILCRQVDQP 540
Query: 570 GMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDEEPNQDSLKEIGKV 621
GMIG VG+ILGE NVNVNFMSVGR R IMAIGVD+ P++++LK+IG++
Sbjct: 541 GMIGTVGSILGESNVNVNFMSVGRIAPRKQAIMAIGVDDIPSKETLKKIGEI 592
|
|
| TAIR|locus:2090649 AT3G19480 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1976 (700.6 bits), Expect = 3.0e-204, P = 3.0e-204
Identities = 385/532 (72%), Positives = 457/532 (85%)
Query: 90 KPTILVSEKLGEAGLAILRSFGNVECLYDLSPEALCEKISQCDALIVRSGTKVTRSVFEA 149
KPTILV+EKLG+AG+ +L+ + NV+C YDLS E LC KIS CDALIVRSGTKV R VFE+
Sbjct: 46 KPTILVTEKLGQAGIDLLKKYANVDCSYDLSLEELCTKISLCDALIVRSGTKVGRDVFES 105
Query: 150 ANGKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQAD 209
+ G+LKVVGRAGVGIDNVDL AATE+GCLVVNAP ANTVAAAEHGIALL +MARN++QAD
Sbjct: 106 SRGRLKVVGRAGVGIDNVDLAAATEYGCLVVNAPTANTVAAAEHGIALLTAMARNIAQAD 165
Query: 210 ASIKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARA 269
ASIKAGKW R+KYVGVSLVGKTLAV+GFGKVGSEVARRA+GLGM+VI HDPYAPAD+ARA
Sbjct: 166 ASIKAGKWTRNKYVGVSLVGKTLAVLGFGKVGSEVARRARGLGMHVITHDPYAPADRARA 225
Query: 270 VGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEAL 329
+GVELVSF+ A++TADFISLH+PL TSK+ ND TFA MKKGVRIVNVARGGVIDEEAL
Sbjct: 226 IGVELVSFEVAISTADFISLHLPLTAATSKMMNDVTFAMMKKGVRIVNVARGGVIDEEAL 285
Query: 330 VRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKXXXXXXXXXXXXXXX 389
+RALDSG+VAQAALDVFT EPP KD+KLV HE+VT TPHLGAST
Sbjct: 286 LRALDSGIVAQAALDVFTVEPPVKDNKLVLHESVTATPHLGASTMEAQEGVSIEVAEAVI 345
Query: 390 XXLRGELSATAINAPMVPSEVLSELAPYVVLAKKLGRLAVQLVSGGSGIKSVKLIYRSAR 449
LRGEL+ATA+NAPMVP EVL EL PYVVLA+KLGRLAVQLV+GGSG+ +VK+ Y S+R
Sbjct: 346 GALRGELAATAVNAPMVPLEVLRELKPYVVLAEKLGRLAVQLVTGGSGVNAVKVTYASSR 405
Query: 450 DPDDLDTRILRAMITKGIIEPISASFINLVNADFTAKQKGLRISEERVVADSSPEFPIDS 509
PDDLDTR+LRAM+ KGIIEPIS+ FINLVN+D+ AKQ+G++ISEER+V D SPE PI+
Sbjct: 406 APDDLDTRLLRAMVIKGIIEPISSVFINLVNSDYIAKQRGVKISEERMVLDGSPENPIEY 465
Query: 510 IQVQLSNVDSKFAAAVSENGEISIEGKVKFGIPHLTRVGSFGVDASLEGNLILCRQVDQP 569
I V+++NV+S+FA+A+SE+GEI +EG+VK G+P LT+VG FGVD SLEG++ILCRQVDQP
Sbjct: 466 ITVRIANVESRFASALSESGEIKVEGRVKQGVPSLTKVGLFGVDVSLEGSVILCRQVDQP 525
Query: 570 GMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDEEPNQDSLKEIGKV 621
GMIGKV +ILG+ NVNV+FMSVGR +MAIGVDE+P++++LK+IG +
Sbjct: 526 GMIGKVASILGDENVNVSFMSVGRIAPGKQAVMAIGVDEQPSKETLKKIGDI 577
|
|
| TIGR_CMR|DET_0599 DET_0599 "D-3-phosphoglycerate dehydrogenase" [Dehalococcoides ethenogenes 195 (taxid:243164)] | Back alignment and assigned GO terms |
|---|
Score = 881 (315.2 bits), Expect = 3.2e-88, P = 3.2e-88
Identities = 194/516 (37%), Positives = 300/516 (58%)
Query: 93 ILVSEKLGEAGLAILRSFGNVECLYDLSPEALCEKISQCDALIVRSGTKVTRSVFEAANG 152
+LVS+ L GL+ L+ V+ L PE L I + DAL+VRS T+VT + A
Sbjct: 4 VLVSDALSATGLSPLKEIAQVDVKTGLKPEELVSIIGEYDALLVRSQTQVTADIINAGK- 62
Query: 153 KLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASI 212
KL+V+GRAGVG+DN+DL+AAT G +VVNAP NT++A EH +AL+ SMAR++ +A+AS+
Sbjct: 63 KLQVIGRAGVGVDNIDLKAATGNGIIVVNAPTGNTISATEHTLALMLSMARHIPRANASL 122
Query: 213 KAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGV 272
K+G+W R+++VG L GKTL ++G G +GSE+A+RA L M VI +DP+ ++A+ + V
Sbjct: 123 KSGQWKRNEFVGSELKGKTLGIVGLGNIGSEIAKRALALEMRVIGYDPFISMERAKKLQV 182
Query: 273 ELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRA 332
ELV F+ L ADFI+LH+P+ T + + MK VR++N +RGG+IDEEAL A
Sbjct: 183 ELVPFEDLLKQADFITLHVPMTGQTKGLIGPKELEMMKPTVRLINTSRGGIIDEEALAAA 242
Query: 333 LDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKXXXXXXXXXXXXXXXXXL 392
+ + AA+DVF++EP +S L + +N+ VTPHLGAST
Sbjct: 243 IREKRIGGAAIDVFSKEP-CTESCLFECDNIIVTPHLGASTAEAQELATSDVVKQVIDVF 301
Query: 393 RGELSATAINAPMVPSEVLSELAPYVVLAKKLGRLAVQLVSGGSGIKSVKLIYRSARDPD 452
G + A+NAP + +E L + P++ +A+ +G L QL G +K+V + Y +
Sbjct: 302 EGRPARYAVNAPYISAESLPVVGPFMPVARTVGSLVSQLTDGH--MKNVTIKY--CGELA 357
Query: 453 DLDTRILRAMITKGIIEPISASFINLVNADFTAKQKGLRISEERVVADSSPEFPIDSIQV 512
DT L+A++ GI+E IS +N+VNAD A Q+GL ++E++ A + I ++ +
Sbjct: 358 AYDTTALKALVLGGILEHISEERVNVVNADIVAAQRGLGVTEQKESACQNFSSLI-TVTI 416
Query: 513 QLSNVDSKFAAAVSENGEISIEGKVKFGIPHLTRVGSFGVDASLEGNLILCRQVDQPGMI 572
N S A G++ I + I + G F + +D+PG+I
Sbjct: 417 DTDNGKSNTVAGSLVRGDVHIVRLNDYWIDIVPTGGYF----------LFADHIDRPGLI 466
Query: 573 GKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDE 608
G G I G+ ++N+++M + R R +M + +DE
Sbjct: 467 GAAGKITGDADINISYMHLSRQKARGQALMILALDE 502
|
|
| TIGR_CMR|CHY_2698 CHY_2698 "D-3-phosphoglycerate dehydrogenase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] | Back alignment and assigned GO terms |
|---|
Score = 837 (299.7 bits), Expect = 1.5e-83, P = 1.5e-83
Identities = 179/439 (40%), Positives = 267/439 (60%)
Query: 93 ILVSEKLGEAGLAILRSFGN-VECLYDLSPEALCEKISQCDALIVRSGTKVTRSVFEAAN 151
IL S+ + E GL ILR G V+ LS E L + I Q DALIVRS TKVT + EAA
Sbjct: 3 ILASDPIAEKGLNILREEGFIVDEKTKLSEEELIKIIPQYDALIVRSETKVTARIIEAAE 62
Query: 152 GKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADAS 211
LK++GRAGVG+DN+DL AA++ G +VVN+P NT+AAAEH AL+ ++ RN+ QA A+
Sbjct: 63 N-LKIIGRAGVGVDNIDLAAASKKGIIVVNSPEGNTIAAAEHTFALMMALLRNIPQAHAA 121
Query: 212 IKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVG 271
+K GKWLR ++ G L GKT+ ++G G++G+ VA+R K VI +DP+ ++A+ +G
Sbjct: 122 LKEGKWLRKEFTGYELRGKTVGIIGLGRIGTAVAKRVKAFETRVIGYDPFISEERAQMLG 181
Query: 272 VELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVR 331
+ L+S ++ L +D +++H+PLN T + N E MKK I+N ARGG+IDEEAL
Sbjct: 182 ITLMSLEELLQNSDIVTMHLPLNNETRNLINRERLKLMKKSAFIINCARGGIIDEEALYE 241
Query: 332 ALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKXXXXXXXXXXXXXXXXX 391
AL +G +A AALDVF++EP +S L + NV VTPHLGASTK
Sbjct: 242 ALKAGEIAGAALDVFSKEP-LTESPLFELPNVIVTPHLGASTKEAQINVAIDVAREIASV 300
Query: 392 LRGELSATAINAPMVPSEVLSELAPYVVLAKKLGRLAVQLVSGGSGIKSVKLIYRSARDP 451
L+G L+ A+N P + E L PY+ LA+KLG Q++SGG + + +++Y +
Sbjct: 301 LKGGLAQNAVNFPAMDKESYQRLKPYINLAEKLGNFLAQILSGG--LLAAEIVYNGSAFK 358
Query: 452 DDLDTRILRAMITKGIIEPISASFINLVNADFTAKQKGLRISEERVVADSSPEFPIDSIQ 511
++ TR L KG+++P+ +N VNA AK++G+++ E V+ + + + +++
Sbjct: 359 EE--TRPLTLAALKGLLDPLLMERVNYVNAPVVAKERGIKV-RETVMENGADYTNLITLK 415
Query: 512 VQLSNVDSKFAAAVSENGE 530
V + A + N E
Sbjct: 416 VTTEKGERIIAGTLFRNNE 434
|
|
| TIGR_CMR|GSU_1198 GSU_1198 "D-3-phosphoglycerate dehydrogenase" [Geobacter sulfurreducens PCA (taxid:243231)] | Back alignment and assigned GO terms |
|---|
Score = 803 (287.7 bits), Expect = 6.0e-80, P = 6.0e-80
Identities = 188/532 (35%), Positives = 288/532 (54%)
Query: 93 ILVSEKLGEAGLAILRSFGNVEC--LYDLSPEALCEKISQCDALIVRSGTKVTRSVFEAA 150
I+V++++ + GLA+L VE L E L I D +I RSGT V R + +A
Sbjct: 3 IIVTDEVAQEGLALLAQDPRVELDVKLGLKKEELLAIIGDYDVIITRSGTTVNRELLDAG 62
Query: 151 NGKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADA 210
KL++V RAGVGIDNVD+ A+ G +VVNAP NT +AAEH +ALL S RNV++A+
Sbjct: 63 K-KLRLVARAGVGIDNVDVDYASSRGVIVVNAPFGNTNSAAEHAMALLLSFCRNVTRANG 121
Query: 211 SIKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAV 270
S+K+G+W R+ + G L GKT V+G GKVG VA R K +V+A DPY +A +
Sbjct: 122 SLKSGEWKRAPFTGYELKGKTAGVIGLGKVGGRVATRLKAFECDVLACDPYIAVKRAHDL 181
Query: 271 GVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALV 330
GV+LVS D+ D I++H PL T + + A MK GV IVN ARGG+I+E AL+
Sbjct: 182 GVKLVSHDEIYKNCDIITVHTPLTDETRNMIGERELAMMKDGVIIVNAARGGIIEEAALL 241
Query: 331 RALDSGVVAQAALDVFTEEPPAKD--SKLVQHENVTVTPHLGASTKXXXXXXXXXXXXXX 388
+ L+SG VA AA+DVF+EEPP + KL+ HE V VTPHLGA+T
Sbjct: 242 KYLESGKVAGAAVDVFSEEPPKSEYLKKLIGHERVVVTPHLGANTFEAQVNVAVDVSREI 301
Query: 389 XXXLRGELSATAINAPMVPSEVLSELAPYVVLAKKLGRLAVQLVSGGSGIKSVKLIYRSA 448
L + A+N P ++ ++ P++ L L +QL+ K+++ +
Sbjct: 302 LNYLDDQPLENAVNIPRFDLALMDQMRPFLNLMNTLCEFGIQLLDANIS----KIVFGFS 357
Query: 449 RDPDDLDTRILRAMITKGIIEPISASFINLVNADFTAKQKGLRISEERVV-ADSSPEFPI 507
D L I+ + +N+VNA A+ G+ + E + AD+
Sbjct: 358 GSIAHYDCTPLTVCGLASILNRMVDQDVNMVNASLIAEGMGIVVEESKTTHADA------ 411
Query: 508 DSIQVQLSNVDSKFAAAVSENGEI-SIEGKVKFGIPHLTRVGSFGVDASLEGNLILCRQV 566
SN+ + E G+ +I G + G+P + R+ + +D + E +++L
Sbjct: 412 ------FSNLIT--IVVEGEGGKRRTISGTLFEGLPRIVRLRDYSMDFAPEEHMLLLHYA 463
Query: 567 DQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDEEPNQDSLKEI 618
D+PGMIGK+G I+G+H +N+ M++GR+ ++ ++ + +D L+E+
Sbjct: 464 DRPGMIGKIGTIMGQHEINIASMNLGRSEKKGEAMVILSLDSAVPPQVLEEV 515
|
|
| TIGR_CMR|SPO_3355 SPO_3355 "D-3-phosphoglycerate dehydrogenase" [Ruegeria pomeroyi DSS-3 (taxid:246200)] | Back alignment and assigned GO terms |
|---|
Score = 761 (272.9 bits), Expect = 1.7e-75, P = 1.7e-75
Identities = 182/452 (40%), Positives = 254/452 (56%)
Query: 91 PTILVSEKLGEAGLAILRSFG-NVECLYDLSPEA--LCEKISQCDALIVRSGTKVTRSVF 147
P +L+S+KL +A + I R G +V+ DL + L E I Q D L +RS TKVT +
Sbjct: 3 PKVLISDKLSDAAVQIFRDRGIDVDFQPDLGKDKDKLAEVIGQYDGLAIRSATKVTEKIL 62
Query: 148 EAANGKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQ 207
E A LKV+GRAG+G DNVD AA++ G +V+N P N + AEH IA++ ++AR + +
Sbjct: 63 ENATN-LKVIGRAGIGTDNVDKDAASKKGVIVMNTPFGNMITTAEHAIAMMFAVARQIPE 121
Query: 208 ADASIKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKA 267
A AS AGKW +SK++GV L KTL V+G G +G V RA+GL M VIA+DP+ +KA
Sbjct: 122 ASASTHAGKWEKSKFMGVELTNKTLGVIGAGNIGGIVCDRARGLKMKVIAYDPFLGEEKA 181
Query: 268 RAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEE 327
+GVE V D L ADFI+LH+PL T I E AK KKGVRI+N ARGG++DEE
Sbjct: 182 NKMGVEKVELDDLLKRADFITLHVPLTDQTRNILGRENLAKTKKGVRIINCARGGLVDEE 241
Query: 328 ALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKXXXXXXXXXXXXX 387
AL L SG VA AA DVF+ EP AK++ L NV TPHLGA+T
Sbjct: 242 ALAEMLQSGHVAGAAFDVFSVEP-AKENPLFGLPNVVCTPHLGAATTEAQENVALQVAEQ 300
Query: 388 XXXXLRGELSATAINAPMVPSEVLSELAPYVVLAKKLGRLAVQLVSGGSGIKSVKLIYRS 447
L A+N P V +E + P++ LA LG Q+ IK++ ++Y
Sbjct: 301 MSNYLLTGAVENALNMPSVTAEEAKVMGPWIALAGHLGSFVGQMTD--EPIKAINILYDG 358
Query: 448 ARDPDDLDTRILRAMITKGIIEPISASFINLVNADFTAKQKGLRISEERVVADSSPEFPI 507
+L L GI++ + +N+V+A AK++G++IS D S F
Sbjct: 359 TASTMNLAA--LNCATVAGIMKKANPE-VNMVSAPVVAKERGIQISTTN--QDKSGAF-- 411
Query: 508 DSIQVQLSNVDSKFAAAVSENGEISIEGKVKF 539
D V+++ V +K +V+ G + +GK +F
Sbjct: 412 DGY-VKVTVVTAKRERSVA--GTVFSDGKPRF 440
|
|
| UNIPROTKB|E1C7Y3 PHGDH "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 746 (267.7 bits), Expect = 6.5e-74, P = 6.5e-74
Identities = 174/442 (39%), Positives = 246/442 (55%)
Query: 93 ILVSEKLGEAGLAILRSFGNVECLYD--LSPEALCEKISQCDALIVRSGTKVTRSVFEAA 150
+L+S+ L IL++ G ++ L LS E L ++I CD LIVRS TKV+ V EAA
Sbjct: 9 VLISDSLDPCCRDILQA-GGIQVLEKPGLSKEELLQEIRDCDGLIVRSATKVSADVLEAA 67
Query: 151 NGKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADA 210
G+L+VVGRAG G+DNVD+ AAT G LV+N P N+++AAE ++ +AR + QA A
Sbjct: 68 -GRLQVVGRAGTGVDNVDVDAATRKGVLVMNTPTGNSLSAAELTCGMILCLARQIPQAAA 126
Query: 211 SIKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAV 270
S+K GKW R KY+G+ L GKTL V+G G++G EVA R + GM I +DP + + A
Sbjct: 127 SMKEGKWDRKKYMGMELNGKTLGVLGLGRIGREVATRMQAFGMKTIGYDPIITPETSAAF 186
Query: 271 GVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALV 330
GVE + +Q DFI++H PL P+T+ + ND TFAK ++GV++VN ARGG++DE AL+
Sbjct: 187 GVEQLPLEQIWPRCDFITVHTPLLPSTTGLLNDSTFAKCRRGVQVVNCARGGIVDEGALL 246
Query: 331 RALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKXXXXXXXXXXXXXXXX 390
RAL SG AALDVFT+EPP KD LV H NV PHLGAST+
Sbjct: 247 RALRSGQCGGAALDVFTQEPP-KDRDLVDHPNVICCPHLGASTREAQSRCGKEIAMQIVD 305
Query: 391 XLRGELSATAINAPMVPSEVLSELAPYVVLAKKLGRLAVQLVSGGSGIKSVKLIYRSARD 450
G+ +N + + P++ LAK LG + L +G V + +D
Sbjct: 306 MATGKGLVGVVNGQALSKAFAPQTKPWIALAKALGTVLHGLAKQATGNVQVCTLGAPLKD 365
Query: 451 PDD-LDTRILRAMITKGIIEPISASFINLVNADFTAKQKGLRISEERVVADSSPEFPIDS 509
L ++ M+ +G E LVNA A++ GL+++ D+ PE P
Sbjct: 366 ASSYLAPAVVSGMLARGKKEA------TLVNAMLLAQEAGLKVTATH--GDTCPE-PEGL 416
Query: 510 IQVQLSNVDSKFAAAVSENGEI 531
+QV L + V + +
Sbjct: 417 LQVALQGTPHRVTGTVQGSSPV 438
|
|
| RGD|61987 Phgdh "phosphoglycerate dehydrogenase" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 739 (265.2 bits), Expect = 3.6e-73, P = 3.6e-73
Identities = 167/402 (41%), Positives = 234/402 (58%)
Query: 93 ILVSEKLGEAGLAILRSFG-NVECLYDLSPEALCEKISQCDALIVRSGTKVTRSVFEAAN 151
IL+S+ L IL+ G V +LS E L ++ C+ LIVRS TKVT V AA
Sbjct: 9 ILISDSLDPCCRKILQDGGLQVVEKQNLSKEELIAELQDCEGLIVRSATKVTADVINAAE 68
Query: 152 GKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADAS 211
KL+VVGRAG G+DNVDL+AAT G LV+N P N+++AAE +L +AR + QA AS
Sbjct: 69 -KLQVVGRAGTGVDNVDLEAATRKGVLVMNTPNGNSLSAAELTCGMLMCLARQIPQATAS 127
Query: 212 IKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVG 271
+K GKW R K++G L GKTL ++G G++G EVA R + GM + +DP + A + G
Sbjct: 128 MKDGKWDRKKFMGTELNGKTLGILGLGRIGREVAARMQAFGMKTVGYDPIISPEVAASFG 187
Query: 272 VELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVR 331
V+ + ++ DFI++H PL P+T+ + ND TFA+ KKGVR+VN ARGG++DE AL+R
Sbjct: 188 VQQLPLEEIWPLCDFITVHTPLLPSTTGLLNDSTFAQCKKGVRVVNCARGGIVDEGALLR 247
Query: 332 ALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKXXXXXXXXXXXXXXXXX 391
AL SG A AALDVFTEEPP +D LV HENV PHLGASTK
Sbjct: 248 ALQSGQCAGAALDVFTEEPP-RDRALVDHENVISCPHLGASTKEAQSRCGEEIAVQFVDM 306
Query: 392 LRGELSATAINAPMVPSEVLSELAPYVVLAKKLGRLAVQLVSGGSGIKSVKLIYRSARDP 451
++G+ +NA + S P++ LA+ LG L G +++++ +
Sbjct: 307 VKGKSLTGVVNAQALTSAFSPHTKPWIGLAEALGTLMHAWAGSPKG--TIQVVTQGT-SL 363
Query: 452 DDLDTRILRAMITKGIIEPISASFINLVNADFTAKQKGLRIS 493
+ T + A+I + E + +NLVNA K+ GL ++
Sbjct: 364 KNAGTCLSPAVIVGLLREASKQADVNLVNAKLLVKEAGLNVT 405
|
|
| MGI|MGI:1355330 Phgdh "3-phosphoglycerate dehydrogenase" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 734 (263.4 bits), Expect = 1.2e-72, P = 1.2e-72
Identities = 164/402 (40%), Positives = 234/402 (58%)
Query: 93 ILVSEKLGEAGLAILRSFG-NVECLYDLSPEALCEKISQCDALIVRSGTKVTRSVFEAAN 151
+L+S+ L IL+ G V +LS E L ++ C+ LIVRS TKVT V AA
Sbjct: 9 VLISDSLDPCCRKILQDGGLQVVEKQNLSKEELIAELQDCEGLIVRSATKVTADVINAAE 68
Query: 152 GKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADAS 211
KL+VVGRAG G+DNVDL+AAT G LV+N P N+++AAE ++ +AR + QA AS
Sbjct: 69 -KLQVVGRAGTGVDNVDLEAATRKGILVMNTPNGNSLSAAELTCGMIMCLARQIPQATAS 127
Query: 212 IKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVG 271
+K GKW R K++G L GKTL ++G G++G EVA R + GM + +DP + A + G
Sbjct: 128 MKDGKWDRKKFMGTELNGKTLGILGLGRIGREVATRMQSFGMKTVGYDPIISPEVAASFG 187
Query: 272 VELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVR 331
V+ + ++ DFI++H PL P+T+ + ND TFA+ KKGVR+VN ARGG++DE AL+R
Sbjct: 188 VQQLPLEEIWPLCDFITVHTPLLPSTTGLLNDSTFAQCKKGVRVVNCARGGIVDEGALLR 247
Query: 332 ALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKXXXXXXXXXXXXXXXXX 391
AL SG A AALDVFTEEPP +D LV HENV PHLGASTK
Sbjct: 248 ALQSGQCAGAALDVFTEEPP-RDRALVDHENVISCPHLGASTKEAQSRCGEEIAVQFVDM 306
Query: 392 LRGELSATAINAPMVPSEVLSELAPYVVLAKKLGRLAVQLVSGGSGIKSVKLIYRSARDP 451
++G+ +NA + S P++ LA+ +G L G +++++ +
Sbjct: 307 VKGKSLTGVVNAQALTSAFSPHTKPWIGLAEAMGTLMHAWAGSPKG--TIQVVTQGT-SL 363
Query: 452 DDLDTRILRAMITKGIIEPISASFINLVNADFTAKQKGLRIS 493
+ T + A+I + E + +NLVNA K+ GL ++
Sbjct: 364 KNAGTCLSPAVIVGLLREASKQADVNLVNAKLLVKEAGLNVT 405
|
|
| UNIPROTKB|O43175 PHGDH "D-3-phosphoglycerate dehydrogenase" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 732 (262.7 bits), Expect = 2.0e-72, P = 2.0e-72
Identities = 166/402 (41%), Positives = 234/402 (58%)
Query: 93 ILVSEKLGEAGLAILRSFG-NVECLYDLSPEALCEKISQCDALIVRSGTKVTRSVFEAAN 151
+L+S+ L IL+ G V +LS E L ++ C+ LIVRS TKVT V AA
Sbjct: 9 VLISDSLDPCCRKILQDGGLQVVEKQNLSKEELIAELQDCEGLIVRSATKVTADVINAAE 68
Query: 152 GKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADAS 211
KL+VVGRAG G+DNVDL+AAT G LV+N P N+++AAE ++ +AR + QA AS
Sbjct: 69 -KLQVVGRAGTGVDNVDLEAATRKGILVMNTPNGNSLSAAELTCGMIMCLARQIPQATAS 127
Query: 212 IKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVG 271
+K GKW R K++G L GKTL ++G G++G EVA R + GM I +DP + + + G
Sbjct: 128 MKDGKWERKKFMGTELNGKTLGILGLGRIGREVATRMQSFGMKTIGYDPIISPEVSASFG 187
Query: 272 VELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVR 331
V+ + ++ DFI++H PL P+T+ + ND TFA+ KKGVR+VN ARGG++DE AL+R
Sbjct: 188 VQQLPLEEIWPLCDFITVHTPLLPSTTGLLNDNTFAQCKKGVRVVNCARGGIVDEGALLR 247
Query: 332 ALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKXXXXXXXXXXXXXXXXX 391
AL SG A AALDVFTEEPP +D LV HENV PHLGASTK
Sbjct: 248 ALQSGQCAGAALDVFTEEPP-RDRALVDHENVISCPHLGASTKEAQSRCGEEIAVQFVDM 306
Query: 392 LRGELSATAINAPMVPSEVLSELAPYVVLAKKLGRLAVQLVSGGSGIKSVKLIYRSARDP 451
++G+ +NA + S P++ LA+ LG L GS ++++I +
Sbjct: 307 VKGKSLTGVVNAQALTSAFSPHTKPWIGLAEALGTL--MRAWAGSPKGTIQVITQGT-SL 363
Query: 452 DDLDTRILRAMITKGIIEPISASFINLVNADFTAKQKGLRIS 493
+ + A+I + E + +NLVNA K+ GL ++
Sbjct: 364 KNAGNCLSPAVIVGLLKEASKQADVNLVNAKLLVKEAGLNVT 405
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| O29445 | SERA_ARCFU | 1, ., 1, ., 1, ., 9, 5 | 0.3966 | 0.8057 | 0.9601 | yes | no |
| O04130 | SERA_ARATH | 1, ., 1, ., 1, ., 9, 5 | 0.7336 | 0.9617 | 0.9679 | yes | no |
| P35136 | SERA_BACSU | 1, ., 1, ., 1, ., 9, 5 | 0.3808 | 0.8057 | 0.9638 | yes | no |
| O27051 | SERA_METTH | 1, ., 1, ., 1, ., 9, 5 | 0.3721 | 0.8152 | 0.9752 | yes | no |
| Q58424 | SERA_METJA | 1, ., 1, ., 1, ., 9, 5 | 0.4288 | 0.8168 | 0.9790 | yes | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| Your Input: | |||||||||||
| gw1.VIII.1454.1 | hypothetical protein (544 aa) | ||||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| gw1.V.3607.1 | phosphoserine transaminase (EC-2.6.1.52) (378 aa) | • | • | • | • | 0.966 | |||||
| fgenesh4_pg.C_scaffold_1557000001 | Predicted protein (206 aa) | • | • | 0.448 | |||||||
| gw1.1441.1.1 | annotation not avaliable (142 aa) | • | 0.427 | ||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 628 | |||
| PRK13581 | 526 | PRK13581, PRK13581, D-3-phosphoglycerate dehydroge | 0.0 | |
| TIGR01327 | 525 | TIGR01327, PGDH, D-3-phosphoglycerate dehydrogenas | 1e-179 | |
| cd12173 | 304 | cd12173, PGDH_4, Phosphoglycerate dehydrogenases, | 1e-165 | |
| COG0111 | 324 | COG0111, SerA, Phosphoglycerate dehydrogenase and | 1e-116 | |
| cd05303 | 301 | cd05303, PGDH_2, Phosphoglycerate dehydrogenase (P | 1e-115 | |
| cd12172 | 306 | cd12172, PGDH_like_2, Putative D-3-Phosphoglycerat | 1e-112 | |
| cd05198 | 302 | cd05198, formate_dh_like, Formate/glycerate and re | 3e-98 | |
| pfam00389 | 312 | pfam00389, 2-Hacid_dh, D-isomer specific 2-hydroxy | 5e-98 | |
| cd05301 | 309 | cd05301, GDH, D-glycerate dehydrogenase/hydroxypyr | 1e-96 | |
| cd05299 | 312 | cd05299, CtBP_dh, C-terminal binding protein (CtBP | 5e-95 | |
| COG1052 | 324 | COG1052, LdhA, Lactate dehydrogenase and related d | 7e-92 | |
| cd12175 | 311 | cd12175, 2-Hacid_dh_11, Putative D-isomer specific | 1e-91 | |
| cd12171 | 310 | cd12171, 2-Hacid_dh_10, Putative D-isomer specific | 9e-87 | |
| cd12177 | 321 | cd12177, 2-Hacid_dh_12, Putative D-isomer specific | 3e-84 | |
| cd12178 | 317 | cd12178, 2-Hacid_dh_13, Putative D-isomer specific | 1e-82 | |
| cd12174 | 305 | cd12174, PGDH_like_3, Putative D-3-Phosphoglycerat | 7e-81 | |
| pfam02826 | 175 | pfam02826, 2-Hacid_dh_C, D-isomer specific 2-hydro | 3e-79 | |
| cd12162 | 307 | cd12162, 2-Hacid_dh_4, Putative D-isomer specific | 2e-78 | |
| cd12176 | 304 | cd12176, PGDH_3, Phosphoglycerate dehydrogenases, | 9e-75 | |
| PRK13243 | 333 | PRK13243, PRK13243, glyoxylate reductase; Reviewed | 3e-73 | |
| cd12169 | 308 | cd12169, PGDH_like_1, Putative D-3-Phosphoglycerat | 2e-72 | |
| cd12168 | 321 | cd12168, Mand_dh_like, D-Mandelate Dehydrogenase-l | 1e-71 | |
| cd01619 | 323 | cd01619, LDH_like, D-Lactate and related Dehydroge | 4e-70 | |
| cd12167 | 330 | cd12167, 2-Hacid_dh_8, Putative D-isomer specific | 3e-65 | |
| PRK11790 | 409 | PRK11790, PRK11790, D-3-phosphoglycerate dehydroge | 4e-65 | |
| cd12187 | 329 | cd12187, LDH_like_1, D-Lactate and related Dehydro | 3e-62 | |
| cd12179 | 306 | cd12179, 2-Hacid_dh_14, Putative D-isomer specific | 2e-61 | |
| cd12157 | 318 | cd12157, PTDH, Thermostable Phosphite Dehydrogenas | 9e-61 | |
| cd12183 | 328 | cd12183, LDH_like_2, D-Lactate and related Dehydro | 1e-58 | |
| cd12161 | 315 | cd12161, GDH_like_1, Putative glycerate dehydrogen | 2e-58 | |
| cd05300 | 313 | cd05300, 2-Hacid_dh_1, Putative D-isomer specific | 3e-58 | |
| cd12186 | 329 | cd12186, LDH, D-Lactate dehydrogenase and D-2-Hydr | 4e-58 | |
| cd12165 | 314 | cd12165, 2-Hacid_dh_6, Putative D-isomer specific | 6e-50 | |
| cd12156 | 301 | cd12156, HPPR, Hydroxy(phenyl)pyruvate Reductase, | 8e-50 | |
| PRK06487 | 317 | PRK06487, PRK06487, glycerate dehydrogenase; Provi | 5e-49 | |
| PRK15409 | 323 | PRK15409, PRK15409, bifunctional glyoxylate/hydrox | 1e-47 | |
| PRK06932 | 314 | PRK06932, PRK06932, glycerate dehydrogenase; Provi | 3e-47 | |
| PRK08410 | 311 | PRK08410, PRK08410, 2-hydroxyacid dehydrogenase; P | 5e-47 | |
| cd12158 | 343 | cd12158, ErythrP_dh, D-Erythronate-4-Phosphate Deh | 2e-46 | |
| cd12185 | 322 | cd12185, HGDH_LDH_like, Putative Lactate dehydroge | 6e-45 | |
| cd12155 | 314 | cd12155, PGDH_1, Phosphoglycerate Dehydrogenase, 2 | 2e-44 | |
| cd05302 | 348 | cd05302, FDH, NAD-dependent Formate Dehydrogenase | 2e-44 | |
| PLN02928 | 347 | PLN02928, PLN02928, oxidoreductase family protein | 2e-42 | |
| PRK07574 | 385 | PRK07574, PRK07574, formate dehydrogenase; Provisi | 2e-41 | |
| PLN02306 | 386 | PLN02306, PLN02306, hydroxypyruvate reductase | 2e-39 | |
| cd12184 | 330 | cd12184, HGDH_like, (R)-2-Hydroxyglutarate Dehydro | 5e-39 | |
| cd12164 | 306 | cd12164, GDH_like_2, Putative glycerate dehydrogen | 2e-37 | |
| cd12180 | 308 | cd12180, 2-Hacid_dh_15, Putative D-isomer specific | 9e-37 | |
| PRK00257 | 381 | PRK00257, PRK00257, erythronate-4-phosphate dehydr | 2e-34 | |
| PLN03139 | 386 | PLN03139, PLN03139, formate dehydrogenase; Provisi | 4e-32 | |
| PRK08605 | 332 | PRK08605, PRK08605, D-lactate dehydrogenase; Valid | 4e-31 | |
| cd12159 | 303 | cd12159, 2-Hacid_dh_2, Putative D-isomer specific | 2e-30 | |
| cd12166 | 300 | cd12166, 2-Hacid_dh_7, Putative D-isomer specific | 5e-30 | |
| PRK06436 | 303 | PRK06436, PRK06436, glycerate dehydrogenase; Provi | 9e-28 | |
| PRK12480 | 330 | PRK12480, PRK12480, D-lactate dehydrogenase; Provi | 1e-27 | |
| cd12163 | 334 | cd12163, 2-Hacid_dh_5, Putative D-isomer specific | 8e-26 | |
| cd12160 | 310 | cd12160, 2-Hacid_dh_3, Putative D-isomer specific | 1e-24 | |
| cd12154 | 310 | cd12154, FDH_GDH_like, Formate/glycerate dehydroge | 7e-21 | |
| PRK15438 | 378 | PRK15438, PRK15438, erythronate-4-phosphate dehydr | 3e-19 | |
| cd04902 | 73 | cd04902, ACT_3PGDH-xct, C-terminal ACT (regulatory | 6e-19 | |
| cd04879 | 71 | cd04879, ACT_3PGDH-like, ACT_3PGDH-like CD include | 8e-17 | |
| PRK15469 | 312 | PRK15469, ghrA, bifunctional glyoxylate/hydroxypyr | 2e-16 | |
| cd04903 | 71 | cd04903, ACT_LSD, C-terminal ACT domain of the L-s | 2e-11 | |
| smart00997 | 162 | smart00997, AdoHcyase_NAD, S-adenosyl-L-homocystei | 5e-09 | |
| cd12170 | 294 | cd12170, 2-Hacid_dh_9, Putative D-isomer specific | 6e-08 | |
| PRK05476 | 425 | PRK05476, PRK05476, S-adenosyl-L-homocysteine hydr | 1e-06 | |
| COG0499 | 420 | COG0499, SAM1, S-adenosylhomocysteine hydrolase [C | 2e-06 | |
| cd02116 | 60 | cd02116, ACT, ACT domains are commonly involved in | 1e-05 | |
| cd00401 | 402 | cd00401, SAHH, S-Adenosylhomocysteine Hydrolase, N | 1e-05 | |
| TIGR00936 | 407 | TIGR00936, ahcY, adenosylhomocysteinase | 2e-05 | |
| pfam01842 | 66 | pfam01842, ACT, ACT domain | 2e-04 | |
| cd05211 | 217 | cd05211, NAD_bind_Glu_Leu_Phe_Val, NAD(P) binding | 0.002 | |
| cd01076 | 227 | cd01076, NAD_bind_1_Glu_DH, NAD(P) binding domain | 0.002 |
| >gnl|CDD|237436 PRK13581, PRK13581, D-3-phosphoglycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 635 bits (1642), Expect = 0.0
Identities = 257/535 (48%), Positives = 342/535 (63%), Gaps = 24/535 (4%)
Query: 91 PTILVSEKLGEAGLAILRSFGNVECLY--DLSPEALCEKISQCDALIVRSGTKVTRSVFE 148
+LVS+ + AGL IL+ VE L E L E I DALIVRS TKVT V E
Sbjct: 1 MKVLVSDPISPAGLEILKDAPGVEVDVKTGLDKEELLEIIGDYDALIVRSATKVTAEVLE 60
Query: 149 AANGKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQA 208
AA LKV+GRAGVG+DNVD+ AAT G +VVNAP NT++AAEH IAL+ ++ARN+ QA
Sbjct: 61 AA-KNLKVIGRAGVGVDNVDVPAATRRGIIVVNAPTGNTISAAEHTIALMLALARNIPQA 119
Query: 209 DASIKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKAR 268
AS+KAGKW R K++GV L GKTL ++G G++GSEVA+RAK GM VIA+DPY ++A
Sbjct: 120 HASLKAGKWERKKFMGVELYGKTLGIIGLGRIGSEVAKRAKAFGMKVIAYDPYISPERAA 179
Query: 269 AVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEA 328
+GVELVS D+ LA ADFI+LH PL P T + E AKMK GVRI+N ARGG+IDE A
Sbjct: 180 QLGVELVSLDELLARADFITLHTPLTPETRGLIGAEELAKMKPGVRIINCARGGIIDEAA 239
Query: 329 LVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKEAQEGVAIEIAEAV 388
L AL SG VA AALDVF +EPP DS L + NV VTPHLGAST EAQE VAI++AE V
Sbjct: 240 LAEALKSGKVAGAALDVFEKEPP-TDSPLFELPNVVVTPHLGASTAEAQENVAIQVAEQV 298
Query: 389 VGALRGELSATAINAPMVPSEVLSELAPYVVLAKKLGRLAVQLVSGGSGIKSVKLIYRSA 448
+ ALRG A+N P + +E +L PY+ LA+KLG LA QL IKSV++ YR
Sbjct: 299 IDALRGGPVPNAVNLPSITAEEAEKLKPYLDLAEKLGSLAAQLA--DGPIKSVEITYRG- 355
Query: 449 RDPDDLDTRILRAMITKGIIEPISASFINLVNADFTAKQKGLRISEERVVADSSPEFPID 508
+ + DT L A KG++ P+ +N VNA AK++G+ + E + ++ SP++ +
Sbjct: 356 -ELAEEDTEPLTAAALKGLLSPVLGERVNYVNAPLLAKERGIEVEESK--SEESPDYS-N 411
Query: 509 SIQVQLSNVDSKFAAAVSENGEISIEGKVKFG--IPHLTRVGSFGVDASLEGNLILCRQV 566
I V +++GE S+ G V FG P + + + VDA EG++++ R
Sbjct: 412 LITVT----------VTTDDGERSVAGTV-FGDGEPRIVEIDGYRVDAKPEGHMLIIRNR 460
Query: 567 DQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDEEPNQDSLKEIGKV 621
D+PG+IGKVG +LGE +N+ M +GR +M + VD+ ++ L+E+ +
Sbjct: 461 DRPGVIGKVGTLLGEAGINIAGMQLGRREAGGEALMVLSVDDPVPEEVLEELRAL 515
|
Length = 526 |
| >gnl|CDD|233358 TIGR01327, PGDH, D-3-phosphoglycerate dehydrogenase | Back alignment and domain information |
|---|
Score = 518 bits (1335), Expect = e-179
Identities = 236/533 (44%), Positives = 340/533 (63%), Gaps = 24/533 (4%)
Query: 93 ILVSEKLGEAGLAILRSFG-NVECLYDLSPEALCEKISQCDALIVRSGTKVTRSVFEAAN 151
+L+++ + G+ IL G V+ LS E L E I DALIVRS TKVT V AA
Sbjct: 2 VLIADPISPDGIDILEDVGVEVDVQTGLSREELLEIIPDYDALIVRSATKVTEEVIAAAP 61
Query: 152 GKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADAS 211
KLKV+GRAGVG+DN+D++AAT G LVVNAP NT++AAEH +A+L + ARN+ QADAS
Sbjct: 62 -KLKVIGRAGVGVDNIDIEAATARGILVVNAPTGNTISAAEHALAMLLAAARNIPQADAS 120
Query: 212 IKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVG 271
+K G+W R ++G L GKTL V+G G++GS VA+RAK GM V+A+DPY ++A +G
Sbjct: 121 LKEGEWDRKAFMGTELYGKTLGVIGLGRIGSIVAKRAKAFGMKVLAYDPYISPERAEQLG 180
Query: 272 VELV-SFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALV 330
VELV D+ LA ADFI++H PL P T + E AKMKKGV IVN ARGG+IDE AL
Sbjct: 181 VELVDDLDELLARADFITVHTPLTPETRGLIGAEELAKMKKGVIIVNCARGGIIDEAALY 240
Query: 331 RALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKEAQEGVAIEIAEAVVG 390
AL+ G V AALDVF +EPP D+ L +NV TPHLGAST+EAQE VA ++AE V+
Sbjct: 241 EALEEGHVRAAALDVFEKEPP-TDNPLFDLDNVIATPHLGASTREAQENVATQVAEQVLD 299
Query: 391 ALRGELSATAINAPMVPSEVLSELAPYVVLAKKLGRLAVQLVSGGSGIKSVKLIYRSARD 450
AL+G A+NAP + ++V+ +L PY+ LA+KLG+LA QL+ G ++SV++ YR +
Sbjct: 300 ALKGLPVPNAVNAPGIDADVMEKLKPYLDLAEKLGKLAGQLLDG--AVQSVEVTYRG--E 355
Query: 451 PDDLDTRILRAMITKGIIEPISASFINLVNADFTAKQKGLRISEERVVADSSPEFPIDSI 510
++ L KG++ P+ +N+VNA AK++G+ + E + ++SSP++ + +
Sbjct: 356 LATENSEPLTRAALKGLLSPVLDDEVNMVNAPAVAKERGITVEESK--SESSPDYK-NYL 412
Query: 511 QVQLSNVDSKFAAAVSENGEISIEGKVKFG--IPHLTRVGSFGVDASLEGNLILCRQVDQ 568
V ++ ++G +S+ G V FG P + + F VD EG +++ +D+
Sbjct: 413 SVTVTG----------DSGTVSVAGTV-FGGFSPRIVEIDGFHVDLEPEGIMLIILHLDK 461
Query: 569 PGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDEEPNQDSLKEIGKV 621
PG+IGKVG +LG +N+ M +GR + +M + +D+ + L+EI +
Sbjct: 462 PGVIGKVGTLLGTAGINIASMQLGRKEKGGEALMLLSLDQPVPDEVLEEIKAI 514
|
This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli [Amino acid biosynthesis, Serine family]. Length = 525 |
| >gnl|CDD|240650 cd12173, PGDH_4, Phosphoglycerate dehydrogenases, NAD-binding and catalytic domains | Back alignment and domain information |
|---|
Score = 474 bits (1222), Expect = e-165
Identities = 175/304 (57%), Positives = 221/304 (72%), Gaps = 2/304 (0%)
Query: 93 ILVSEKLGEAGLAILRSFG-NVECLYDLSPEALCEKISQCDALIVRSGTKVTRSVFEAAN 151
+LV++ + E GL +LR G V+ LS E L I+ DALIVRS TKVT V EAA
Sbjct: 2 VLVTDPIDEEGLELLREAGIEVDVAPGLSEEELLAIIADADALIVRSATKVTAEVIEAA- 60
Query: 152 GKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADAS 211
+LKV+GRAGVG+DN+D++AAT G LVVNAP ANT++ AEH IAL+ ++ARN+ QADAS
Sbjct: 61 PRLKVIGRAGVGVDNIDVEAATARGILVVNAPGANTISVAEHTIALMLALARNIPQADAS 120
Query: 212 IKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVG 271
++AGKW R K++GV L GKTL ++G G++G EVARRA+ GM V+A+DPY A++A A G
Sbjct: 121 LRAGKWDRKKFMGVELRGKTLGIVGLGRIGREVARRARAFGMKVLAYDPYISAERAAAGG 180
Query: 272 VELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVR 331
VELVS D+ LA ADFISLH PL P T + N E AKMK G ++N ARGG++DE AL
Sbjct: 181 VELVSLDELLAEADFISLHTPLTPETRGLINAEELAKMKPGAILINTARGGIVDEAALAD 240
Query: 332 ALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKEAQEGVAIEIAEAVVGA 391
AL SG +A AALDVF +EPP DS L+ NV +TPHLGAST+EAQE VA++ AE V+
Sbjct: 241 ALKSGKIAGAALDVFEQEPPPADSPLLGLPNVILTPHLGASTEEAQERVAVDAAEQVLAV 300
Query: 392 LRGE 395
L GE
Sbjct: 301 LAGE 304
|
Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases. PGDH in E. coli and Mycobacterium tuberculosis form tetramers, with subunits containing a Rossmann-fold NAD binding domain. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Length = 304 |
| >gnl|CDD|223189 COG0111, SerA, Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 349 bits (898), Expect = e-116
Identities = 155/327 (47%), Positives = 201/327 (61%), Gaps = 7/327 (2%)
Query: 88 TPKPTILVSEKLGEAGLAILRSFGNVECL--YDLSPEALCEKISQCDALIVRSGTKVTRS 145
+LV++ L L L + +VE DL E L E ++ DALIV S T VT
Sbjct: 1 KMMIKVLVTDPLAPDALEELLAAYDVEVPDGPDLDEEELLEALADADALIV-SVTPVTEE 59
Query: 146 VFEAANGKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNV 205
V AA LK +GRAG G+DN+DL+AAT+ G LVVNAP N ++ AE +ALL ++AR +
Sbjct: 60 VLAAAP-NLKAIGRAGAGVDNIDLEAATKRGILVVNAPGGNAISVAELVLALLLALARRI 118
Query: 206 SQADASIKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPAD 265
ADAS + G+W R + G L GKT+ ++G G++G VA+R K GM VI +DPY+P +
Sbjct: 119 PDADASQRRGEWDRKAFRGTELAGKTVGIIGLGRIGRAVAKRLKAFGMKVIGYDPYSPRE 178
Query: 266 KARAVGVELV-SFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVI 324
+A GV V S D+ LA AD ++LH+PL P T + N E AKMK G ++N ARGGV+
Sbjct: 179 RAGVDGVVGVDSLDELLAEADILTLHLPLTPETRGLINAEELAKMKPGAILINAARGGVV 238
Query: 325 DEEALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKEAQEGVAIEI 384
DE+AL+ ALDSG +A AALDVF EEP DS L NV +TPH+G ST EAQE VA +
Sbjct: 239 DEDALLAALDSGKIAGAALDVFEEEPLPADSPLWDLPNVILTPHIGGSTDEAQERVAEIV 298
Query: 385 AEAVVGALRGELSATAINAPMVPSEVL 411
AE +V L G NAP V E
Sbjct: 299 AENIVRYLAGG--PVVNNAPEVDLERG 323
|
Length = 324 |
| >gnl|CDD|240628 cd05303, PGDH_2, Phosphoglycerate dehydrogenase (PGDH) NAD-binding and catalytic domains | Back alignment and domain information |
|---|
Score = 346 bits (890), Expect = e-115
Identities = 144/301 (47%), Positives = 203/301 (67%), Gaps = 3/301 (0%)
Query: 93 ILVSEKLGEAGLAILRSFG-NVECLYDLSPEALCEKISQCDALIVRSGTKVTRSVFEAAN 151
IL+++ + E + L G V+ ++ E L EKI D LIVRS TKVT+ V +AA
Sbjct: 3 ILITDGIDEIAIEKLEEAGFEVDYEPLIAKEELLEKIKDYDVLIVRSRTKVTKEVIDAA- 61
Query: 152 GKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADAS 211
LK++ RAGVG+DN+D++ A + G V+N P A++ + AE I L+ S+AR + +A+
Sbjct: 62 KNLKIIARAGVGLDNIDVEYAKKKGIKVINTPGASSNSVAELVIGLMLSLARFIHRANRE 121
Query: 212 IKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVG 271
+K GKW + KY G+ L GKTL ++GFG++G EVA+ A+ LGMNVIA+DPY ++A +G
Sbjct: 122 MKLGKWNKKKYKGIELRGKTLGIIGFGRIGREVAKIARALGMNVIAYDPYPKDEQAVELG 181
Query: 272 VELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVR 331
V+ VS ++ L +DFISLH+PL P T + N + MK G I+N +RGGVIDEEAL+
Sbjct: 182 VKTVSLEELLKNSDFISLHVPLTPETKHMINKKELELMKDGAIIINTSRGGVIDEEALLE 241
Query: 332 ALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKEAQEGVAIEIAEAVVGA 391
AL SG +A AALDVF EPP SKL++ NV++TPH+GASTKEAQE + E+A ++
Sbjct: 242 ALKSGKLAGAALDVFENEPP-PGSKLLELPNVSLTPHIGASTKEAQERIGEELANKIIEF 300
Query: 392 L 392
L
Sbjct: 301 L 301
|
Phosphoglycerate dehydrogenase (PGDH) catalyzes the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDH comes in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases. PGDH in E. coli and Mycobacterium tuberculosis form tetramers, with subunits containing a Rossmann-fold NAD binding domain. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Length = 301 |
| >gnl|CDD|240649 cd12172, PGDH_like_2, Putative D-3-Phosphoglycerate Dehydrogenases, NAD-binding and catalytic domains | Back alignment and domain information |
|---|
Score = 337 bits (866), Expect = e-112
Identities = 137/313 (43%), Positives = 184/313 (58%), Gaps = 14/313 (4%)
Query: 86 AVTPKPTILVSEKLGEAGLAILRSFG-NVECL---YDLSPEALCEKISQCDALIVRSGT- 140
VTP+ K E +L + G V L+ E L E + D +I G
Sbjct: 3 LVTPRSF----SKYSEEAKELLEAAGFEVVLNPLGRPLTEEELIELLKDADGVIA--GLD 56
Query: 141 KVTRSVFEAANGKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLAS 200
+T V AA +LKV+ R GVG DN+DL+AA + G +V N P AN+ + AE I L+ +
Sbjct: 57 PITEEVLAAAP-RLKVISRYGVGYDNIDLEAAKKRGIVVTNTPGANSNSVAELTIGLMLA 115
Query: 201 MARNVSQADASIKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDP 260
+AR + QAD ++AG W + VG L GKTL ++G G++G VARR G GM V+A+DP
Sbjct: 116 LARQIPQADREVRAGGW--DRPVGTELYGKTLGIIGLGRIGKAVARRLSGFGMKVLAYDP 173
Query: 261 YAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVAR 320
Y + A+ GVE VS ++ L +DFISLH+PL P T + N A MK G ++N AR
Sbjct: 174 YPDEEFAKEHGVEFVSLEELLKESDFISLHLPLTPETRHLINAAELALMKPGAILINTAR 233
Query: 321 GGVIDEEALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKEAQEGV 380
GG++DEEAL AL SG +A AALDVF EEPP DS L++ NV +TPH+GASTKEA +
Sbjct: 234 GGLVDEEALYEALKSGRIAGAALDVFEEEPPPADSPLLELPNVILTPHIGASTKEAVLRM 293
Query: 381 AIEIAEAVVGALR 393
A+ V+ L
Sbjct: 294 GTMAAQNVIDVLA 306
|
Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily, which also include groups such as L-alanine dehydrogenase and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Many, not all, members of this family are dimeric. Length = 306 |
| >gnl|CDD|240622 cd05198, formate_dh_like, Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxy acid dehydrogenase family | Back alignment and domain information |
|---|
Score = 302 bits (775), Expect = 3e-98
Identities = 124/301 (41%), Positives = 175/301 (58%), Gaps = 4/301 (1%)
Query: 92 TILVSEKLGE-AGLAILRSFG-NVECLYDLSPEALCEKISQCDALIVRSGTKVTRSVFEA 149
+LV E L L L + G V DL + L ++ DALIV S T VT V
Sbjct: 1 KVLVLEPLFPPEALEALEATGFEVIVADDLLADELEALLADADALIVSSTTPVTAEVLAK 60
Query: 150 ANGKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQAD 209
A KLK + AG G+DN+DL AA + G V N P AN A AEH + LL ++ R + +AD
Sbjct: 61 AP-KLKFIQVAGAGVDNIDLDAAKKRGITVTNVPGANAEAVAEHALGLLLALLRRLPRAD 119
Query: 210 ASIKAGK-WLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKAR 268
A+++ G WL + + G L GKT+ ++G G++G VA+R + GM V+ +D +
Sbjct: 120 AAVRRGWGWLWAGFPGYELEGKTVGIVGLGRIGQRVAKRLQAFGMKVLYYDRTRKPEPEE 179
Query: 269 AVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEA 328
+G +VS D+ LA +D + LH+PL P T + N+E A MK G +VN ARGG++DE+A
Sbjct: 180 DLGFRVVSLDELLAQSDVVVLHLPLTPETRHLINEEELALMKPGAVLVNTARGGLVDEDA 239
Query: 329 LVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKEAQEGVAIEIAEAV 388
L+RAL SG +A AALDVF EP D L++ NV +TPH+ T+EA+E +A E +
Sbjct: 240 LLRALKSGKIAGAALDVFEPEPLPADHPLLELPNVILTPHIAGYTEEARERMAEIAVENL 299
Query: 389 V 389
Sbjct: 300 E 300
|
Formate dehydrogenase, D-specific 2-hydroxy acid dehydrogenase, Phosphoglycerate Dehydrogenase, Lactate dehydrogenase, Thermostable Phosphite Dehydrogenase, and Hydroxy(phenyl)pyruvate reductase, among others, share a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. 2-hydroxyacid dehydrogenases are enzymes that catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Formate dehydrogenase (FDH) catalyzes the NAD+-dependent oxidation of formate ion to carbon dioxide with the concomitant reduction of NAD+ to NADH. FDHs of this family contain no metal ions or prosthetic groups. Catalysis occurs though direct transfer of hydride ion to NAD+ without the stages of acid-base catalysis typically found in related dehydrogenases. FDHs are found in all methylotrophic microorganisms in energy production and in the stress responses of plants. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase, among others. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 302 |
| >gnl|CDD|215893 pfam00389, 2-Hacid_dh, D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain | Back alignment and domain information |
|---|
Score = 301 bits (774), Expect = 5e-98
Identities = 135/314 (42%), Positives = 184/314 (58%), Gaps = 6/314 (1%)
Query: 93 ILVSEKLGEAGLAILRSFGNVECLYDLSPEALCEKISQCDALIVRSGTKVTRSVFEAANG 152
+L+++ L L +L+ G VE +L E L E DALIVRS T VT V EAA
Sbjct: 1 VLITDPLRPEELELLKEGGEVEVHDELLTEELLEAAKDADALIVRSTTPVTAEVLEAAP- 59
Query: 153 KLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASI 212
LKV+ R GVG+DN+DL AATE G LV N P +T + AE + L+ ++AR + +ADAS+
Sbjct: 60 GLKVIARRGVGVDNIDLDAATERGILVTNVPGYSTESVAELTVGLILALARRIPEADASV 119
Query: 213 KAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGV 272
+AG W + +G+ L GKTL V+G G +G A AK LGM V+A+DPY ++A GV
Sbjct: 120 RAGDWKKGGPIGLELYGKTLGVIGGGGIGGIGAAIAKALGMGVVAYDPYPNPERAEEGGV 179
Query: 273 ELVSFDQAL----ATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEA 328
E++ D L + D I+L P T I +E +K V I N GGVI+E A
Sbjct: 180 EVLLLDLLLLDLKESDDLINLAPPTTMKTGHIIINEARGMLKDAVAINNARGGGVIEEAA 239
Query: 329 LVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKEAQEGVAIEIAEAV 388
L L+ G+ A AALDV EEPP +S L+ NV +TPH+ +T+EAQE +A E AE +
Sbjct: 240 LDALLEEGIAA-AALDVVEEEPPPVNSPLLDLPNVILTPHIAGATEEAQENMAEEAAENL 298
Query: 389 VGALRGELSATAIN 402
+ L+G A+N
Sbjct: 299 LAFLKGGTPPNAVN 312
|
This family represents the largest portion of the catalytic domain of 2-hydroxyacid dehydrogenases as the NAD binding domain is inserted within the structural domain. Length = 312 |
| >gnl|CDD|240626 cd05301, GDH, D-glycerate dehydrogenase/hydroxypyruvate reductase (GDH) | Back alignment and domain information |
|---|
Score = 298 bits (765), Expect = 1e-96
Identities = 122/311 (39%), Positives = 172/311 (55%), Gaps = 9/311 (2%)
Query: 91 PTILVSEKLGEAGLAILRSFGNVECLYD----LSPEALCEKISQCDALIVRSGTKVTRSV 146
P +LV+ +L E LA+LR VE ++D L E L E D L+ K+ +
Sbjct: 1 PKVLVTRRLPEEALALLREGFEVE-VWDEDRPLPREELLEAAKGADGLLCTLTDKIDAEL 59
Query: 147 FEAANGKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVS 206
+AA LKV+ VG D++D+ AA G V N P T A A+ ALL + AR V
Sbjct: 60 LDAA-PPLKVIANYSVGYDHIDVDAAKARGIPVTNTPDVLTDATADLAFALLLAAARRVV 118
Query: 207 QADASIKAGKWLR---SKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAP 263
+ D ++AG+W + +G L GKTL ++G G++G VARRAKG GM ++ H+
Sbjct: 119 EGDRFVRAGEWKGWSPTLLLGTDLHGKTLGIVGMGRIGQAVARRAKGFGMKILYHNRSRK 178
Query: 264 ADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGV 323
+ +G VS D+ LA +DF+SLH PL P T + N E A MK ++N ARGGV
Sbjct: 179 PEAEEELGARYVSLDELLAESDFVSLHCPLTPETRHLINAERLALMKPTAILINTARGGV 238
Query: 324 IDEEALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKEAQEGVAIE 383
+DE+ALV AL SG +A A LDVF EP D L+ NV + PH+G++T E + +A
Sbjct: 239 VDEDALVEALKSGKIAGAGLDVFEPEPLPADHPLLTLPNVVLLPHIGSATVETRTAMAEL 298
Query: 384 IAEAVVGALRG 394
A+ ++ L G
Sbjct: 299 AADNLLAVLAG 309
|
D-glycerate dehydrogenase (GDH, also known as hydroxypyruvate reductase, HPR) catalyzes the reversible reaction of (R)-glycerate + NAD+ to hydroxypyruvate + NADH + H+. In humans, HPR deficiency causes primary hyperoxaluria type 2, characterized by over-excretion of L-glycerate and oxalate in the urine, possibly due to an imbalance in competition with L-lactate dehydrogenase, another formate dehydrogenase (FDH)-like enzyme. GDH, like FDH and other members of the D-specific hydroxyacid dehydrogenase family that also includes L-alanine dehydrogenase and S-adenosylhomocysteine hydrolase, typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann-fold NAD+ binding form, despite often low sequence identity. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 309 |
| >gnl|CDD|240624 cd05299, CtBP_dh, C-terminal binding protein (CtBP), D-isomer-specific 2-hydroxyacid dehydrogenases related repressor | Back alignment and domain information |
|---|
Score = 294 bits (754), Expect = 5e-95
Identities = 129/298 (43%), Positives = 175/298 (58%), Gaps = 10/298 (3%)
Query: 99 LGEAGLAILRSFGNVECLYDLSPEALCEKISQCDALIVRSGTKVTRSVFEAANGKLKVVG 158
L EAG+ ++ + + L E + DAL+V+ VT V EA +LKV+
Sbjct: 20 LEEAGVELVD-------AQSRTEDELIEAAADADALLVQY-APVTAEVIEALP-RLKVIV 70
Query: 159 RAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWL 218
R GVG+DNVD+ AATE G V N P T A+H +AL+ ++AR + D +++AG W
Sbjct: 71 RYGVGVDNVDVAAATERGIPVCNVPDYCTEEVADHALALILALARKLPFLDRAVRAGGWD 130
Query: 219 RSKYVGV-SLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSF 277
+ + L G TL ++GFG++G VA+RAK G VIA+DPY P A GV +VS
Sbjct: 131 WTVGGPIRRLRGLTLGLVGFGRIGRAVAKRAKAFGFRVIAYDPYVPDGVAALGGVRVVSL 190
Query: 278 DQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGV 337
D+ LA +D +SLH PL P T + + E A MK G +VN ARGG++DE AL RAL SG
Sbjct: 191 DELLARSDVVSLHCPLTPETRHLIDAEALALMKPGAFLVNTARGGLVDEAALARALKSGR 250
Query: 338 VAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKEAQEGVAIEIAEAVVGALRGE 395
+A AALDV EEPP DS L+ NV +TPH ++E+ + + AE VV LRGE
Sbjct: 251 IAGAALDVLEEEPPPADSPLLSAPNVILTPHAAWYSEESLAELRRKAAEEVVRVLRGE 308
|
The transcriptional corepressor CtBP is a dehydrogenase with sequence and structural similarity to the d2-hydroxyacid dehydrogenase family. CtBP was initially identified as a protein that bound the PXDLS sequence at the adenovirus E1A C terminus, causing the loss of CR-1-mediated transactivation. CtBP binds NAD(H) within a deep cleft, undergoes a conformational change upon NAD binding, and has NAD-dependent dehydrogenase activity. Length = 312 |
| >gnl|CDD|223980 COG1052, LdhA, Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only] | Back alignment and domain information |
|---|
Score = 286 bits (734), Expect = 7e-92
Identities = 121/323 (37%), Positives = 170/323 (52%), Gaps = 10/323 (3%)
Query: 90 KPTILVSEKLGEAGLAILRSFGNVECLYDLSPEA--LCEKISQCDALIVRSGTKVTRSVF 147
K +L + KL L L+ VE D L E++ DA+I ++ V
Sbjct: 2 KIVVLSTRKLPPEVLERLKEKFEVERYEDDLTPDTELAERLKDADAVITFVNDRIDAEVL 61
Query: 148 EAANGKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQ 207
E G LK++ G DNVDL+AA E G V N P +T A AEH +AL+ ++AR + +
Sbjct: 62 EKLPG-LKLIATRSAGYDNVDLEAAKERGITVTNVPGYSTEAVAEHAVALILALARRIHE 120
Query: 208 ADASIKAGKWLRSKYV----GVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAP 263
D ++ G W S G L GKTL ++G G++G VARR KG GM V+ +D
Sbjct: 121 GDRRVREGNWSLSGGPDPLLGFDLRGKTLGIIGLGRIGQAVARRLKGFGMKVLYYDRSPN 180
Query: 264 ADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGV 323
+ + +G V D+ LA +D ISLH PL P T + N E AKMK G +VN ARGG+
Sbjct: 181 PEAEKELGARYVDLDELLAESDIISLHCPLTPETRHLINAEELAKMKPGAILVNTARGGL 240
Query: 324 IDEEALVRALDSGVVAQAALDVFTEEPPAKDSKL---VQHENVTVTPHLGASTKEAQEGV 380
+DE+AL+ AL SG +A A LDVF EP D L NV +TPH+ ++T+EA++ +
Sbjct: 241 VDEQALIDALKSGKIAGAGLDVFENEPALFDHPLLRLDNFPNVVLTPHIASATEEARKAM 300
Query: 381 AIEIAEAVVGALRGELSATAINA 403
A E + G + +N
Sbjct: 301 AELALENLEAFFDGGVPPNEVNP 323
|
Length = 324 |
| >gnl|CDD|240652 cd12175, 2-Hacid_dh_11, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains | Back alignment and domain information |
|---|
Score = 285 bits (732), Expect = 1e-91
Identities = 109/311 (35%), Positives = 170/311 (54%), Gaps = 7/311 (2%)
Query: 92 TILVSEKLGEAGLAILRS----FGNVECLYDLSPEALCEKISQCDALIVRSGTKVTRSVF 147
+L +LR+ VE + + ++ D L+ + +
Sbjct: 1 KVLFLGPEFPDAEELLRALLPPAPGVEVVTAAELDEEAALLADADVLVPGMRKVIDAEL- 59
Query: 148 EAANGKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQ 207
AA +L+++ + GVG+D VDL+AAT G V N P N + AEH + L+ ++ R + +
Sbjct: 60 LAAAPRLRLIQQPGVGLDGVDLEAATARGIPVANIPGGNAESVAEHAVMLMLALLRRLPE 119
Query: 208 ADASIKAGKWLRSKY-VGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADK 266
AD ++AG+W R + L GKT+ ++G G +G VARR +G G+ VI +D + +
Sbjct: 120 ADRELRAGRWGRPEGRPSRELSGKTVGIVGLGNIGRAVARRLRGFGVEVIYYDRFRDPEA 179
Query: 267 A-RAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVID 325
+ +GV V D+ LA +D +SLH+PL P T + E A MK G ++N ARGG++D
Sbjct: 180 EEKDLGVRYVELDELLAESDVVSLHVPLTPETRHLIGAEELAAMKPGAILINTARGGLVD 239
Query: 326 EEALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKEAQEGVAIEIA 385
EEAL+ AL SG +A A LDVF +EP D L++ +NV +TPH+ T E+ + +A +A
Sbjct: 240 EEALLAALRSGHLAGAGLDVFWQEPLPPDDPLLRLDNVILTPHIAGVTDESYQRMAAIVA 299
Query: 386 EAVVGALRGEL 396
E + LRGE
Sbjct: 300 ENIARLLRGEP 310
|
2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 311 |
| >gnl|CDD|240648 cd12171, 2-Hacid_dh_10, Putative D-isomer specific 2-hydroxyacid dehydrogenases | Back alignment and domain information |
|---|
Score = 272 bits (699), Expect = 9e-87
Identities = 108/262 (41%), Positives = 155/262 (59%), Gaps = 10/262 (3%)
Query: 121 PEALCEKISQCDALIVRSGTKVTRSVFEAANGKLKVVG--RAGVGIDNVDLQAATEFGCL 178
E L E + D LI VT+ V EAA KLK++G R G +NVD++AATE G
Sbjct: 37 EEELLEALKDADILITHFAP-VTKKVIEAAP-KLKLIGVCRGGP--ENVDVEAATERGIP 92
Query: 179 VVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSKY----VGVSLVGKTLAV 234
V+N P N A AE + L+ + RN+++A A++K G+W + Y G L GKT+ +
Sbjct: 93 VLNTPGRNAEAVAEFTVGLMLAETRNIARAHAALKDGEWRKDYYNYDGYGPELRGKTVGI 152
Query: 235 MGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLN 294
+GFG +G VA+R K G V+ +DPY +K A GV+ VS ++ L +D +SLH L
Sbjct: 153 VGFGAIGRRVAKRLKAFGAEVLVYDPYVDPEKIEADGVKKVSLEELLKRSDVVSLHARLT 212
Query: 295 PTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEEPPAKD 354
P T + E FA MK +N AR G++DE+AL+ AL+ G + AALDVF EEP D
Sbjct: 213 PETRGMIGAEEFALMKPTAYFINTARAGLVDEDALIEALEEGKIGGAALDVFPEEPLPAD 272
Query: 355 SKLVQHENVTVTPHLGASTKEA 376
L++ +NVT+TPH+ +T++
Sbjct: 273 HPLLKLDNVTLTPHIAGATRDV 294
|
2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 310 |
| >gnl|CDD|240654 cd12177, 2-Hacid_dh_12, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains | Back alignment and domain information |
|---|
Score = 266 bits (683), Expect = 3e-84
Identities = 121/289 (41%), Positives = 175/289 (60%), Gaps = 4/289 (1%)
Query: 117 YDLSPEALCEKISQCDALIVRSGTKVTRSVFEAANGKLKVVGRAGVGIDNVDLQAATEFG 176
D+S +AL EK+ D +I + FE +G LK++ R G+G DNVDL+AATE G
Sbjct: 34 PDISGKALAEKLKGYDIIIASVTPNFDKEFFEYNDG-LKLIARHGIGYDNVDLKAATEHG 92
Query: 177 CLVVNAP-IANTVAAAEHGIALLASMARNVSQADASIKAGKW-LRSKYVGVSLVGKTLAV 234
+V P A AEH +AL+ ++ R ++QA ++K GKW R+ +VG L GKT+ +
Sbjct: 93 VIVTRVPGAVERDAVAEHAVALILTVLRKINQASEAVKEGKWTERANFVGHELSGKTVGI 152
Query: 235 MGFGKVGSEVARRAK-GLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPL 293
+G+G +GS VA K G V+A+DPY + + G + VS ++ LA +D ISLH PL
Sbjct: 153 IGYGNIGSRVAEILKEGFNAKVLAYDPYVSEEVIKKKGAKPVSLEELLAESDIISLHAPL 212
Query: 294 NPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEEPPAK 353
T + N++ F+KMKKGV +VN ARG +IDEEAL+ AL SG +A A LDV EEP
Sbjct: 213 TEETYHMINEKAFSKMKKGVILVNTARGELIDEEALIEALKSGKIAGAGLDVLEEEPIKA 272
Query: 354 DSKLVQHENVTVTPHLGASTKEAQEGVAIEIAEAVVGALRGELSATAIN 402
D L+ +ENV +TPH+GA T E+ G+ ++ + + L G+ +N
Sbjct: 273 DHPLLHYENVVITPHIGAYTYESLYGMGEKVVDDIEDFLAGKEPKGILN 321
|
2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 321 |
| >gnl|CDD|240655 cd12178, 2-Hacid_dh_13, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains | Back alignment and domain information |
|---|
Score = 262 bits (671), Expect = 1e-82
Identities = 109/311 (35%), Positives = 172/311 (55%), Gaps = 9/311 (2%)
Query: 92 TILVSEKLGEAGLAILRSFGNVEC---LYDLSPEALCEKISQCDALIVRSGTKVTRSVFE 148
+LV+ + + L L V L +S E L E+I+ DALI T V + + +
Sbjct: 2 KVLVTGWIPKEALEELEENFEVTYYDGLGLISKEELLERIADYDALITPLSTPVDKEIID 61
Query: 149 AANGKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQA 208
AA LK++ G G DN+D+ A E G V N P +T AE L+ ++AR +++
Sbjct: 62 AAK-NLKIIANYGAGFDNIDVDYAKEKGIPVTNTPAVSTEPTAELTFGLILALARRIAEG 120
Query: 209 DASIKAGKWL---RSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPY-APA 264
D ++ G +L ++G L GKTL ++G G++G VARRAK GM ++ ++ +
Sbjct: 121 DRLMRRGGFLGWAPLFFLGHELAGKTLGIIGMGRIGQAVARRAKAFGMKILYYNRHRLSE 180
Query: 265 DKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVI 324
+ + +G V D+ L +DF+SLH P P T + + F MK ++N ARG ++
Sbjct: 181 ETEKELGATYVDLDELLKESDFVSLHAPYTPETHHLIDAAAFKLMKPTAYLINAARGPLV 240
Query: 325 DEEALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKEAQEGVAIEI 384
DE+ALV AL +G +A AALDVF EP +L + +NV +TPH+G +T EA++ +A E
Sbjct: 241 DEKALVDALKTGEIAGAALDVFEFEPEVSP-ELKKLDNVILTPHIGNATVEARDAMAKEA 299
Query: 385 AEAVVGALRGE 395
A+ ++ L G+
Sbjct: 300 ADNIISFLEGK 310
|
2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 317 |
| >gnl|CDD|240651 cd12174, PGDH_like_3, Putative D-3-Phosphoglycerate Dehydrogenases, NAD-binding and catalytic domains | Back alignment and domain information |
|---|
Score = 257 bits (658), Expect = 7e-81
Identities = 120/307 (39%), Positives = 170/307 (55%), Gaps = 31/307 (10%)
Query: 92 TILVSEKLGEAGLAILRSFGNVECLYDLSPEALCEKISQCDALIVRSGTKVTRSVFEAAN 151
IL + K+ + GL + + Y++ +AL DALIVRS K+ + A
Sbjct: 2 KILTANKISKKGLERFK-----KDKYEVKEDAL----EDPDALIVRS-DKLH--DMDFAP 49
Query: 152 GKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQA--- 208
LK + RAG G++N+D+ AA++ G +V N P AN A AE IA++ +++RN+ QA
Sbjct: 50 S-LKAIARAGAGVNNIDVDAASKRGIVVFNTPGANANAVAELVIAMMLALSRNIIQAIKW 108
Query: 209 ------DASIKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA 262
D K + + ++VG L GKTL V+G G +G VA A LGM VI +DPY
Sbjct: 109 VTNGDGDDISKGVEKGKKQFVGTELRGKTLGVIGLGNIGRLVANAALALGMKVIGYDPYL 168
Query: 263 PADKARAVGVELV---SFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVA 319
+ A + VE+ S ++ LATAD+I+LH+PL T + N E AKMK G ++N A
Sbjct: 169 SVEAAWKLSVEVQRVTSLEELLATADYITLHVPLTDETRGLINAELLAKMKPGAILLNFA 228
Query: 320 RGGVIDEEALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKEAQEG 379
RG ++DEEAL+ ALD G + + F E PA NV TPHLGAST+EA+E
Sbjct: 229 RGEIVDEEALLEALDEGKL-GGYVTDFPE--PALLGH---LPNVIATPHLGASTEEAEEN 282
Query: 380 VAIEIAE 386
A+ A
Sbjct: 283 CAVMAAR 289
|
Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily, which also include groups such as L-alanine dehydrogenase and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Many, not all, members of this family are dimeric. Length = 305 |
| >gnl|CDD|217244 pfam02826, 2-Hacid_dh_C, D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain | Back alignment and domain information |
|---|
Score = 247 bits (634), Expect = 3e-79
Identities = 82/176 (46%), Positives = 115/176 (65%), Gaps = 1/176 (0%)
Query: 195 IALLASMARNVSQADASIKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMN 254
+ALL ++AR + +AD ++AG+W +G L GKT+ ++G G++G VARR K GM
Sbjct: 1 LALLLALARRIPEADRQVRAGRWRPDALLGRELSGKTVGIIGLGRIGRAVARRLKAFGMK 60
Query: 255 VIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVR 314
VIA+D Y P +A A+G VS D+ LA +D +SLH+PL P T + N E A MK G
Sbjct: 61 VIAYDRY-PKAEAEALGARYVSLDELLAESDVVSLHLPLTPETRHLINAERLALMKPGAI 119
Query: 315 IVNVARGGVIDEEALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLG 370
++N ARGG++DE+AL+ AL SG +A AALDVF EP D L++ NV +TPH+
Sbjct: 120 LINTARGGLVDEDALIAALKSGRIAGAALDVFEPEPLPPDHPLLELPNVILTPHIA 175
|
This domain is inserted into the catalytic domain, the large dehydrogenase and D-lactate dehydrogenase families in SCOP. N-terminal portion of which is represented by family pfam00389. Length = 175 |
| >gnl|CDD|240639 cd12162, 2-Hacid_dh_4, Putative D-isomer specific 2-hydroxyacid dehydrogenases | Back alignment and domain information |
|---|
Score = 250 bits (642), Expect = 2e-78
Identities = 107/283 (37%), Positives = 158/283 (55%), Gaps = 15/283 (5%)
Query: 104 LAILRSFGNVECLYDL-SPEALCEKISQCDALIVRSGTKVTRSVFEAANGKLKVVGRAGV 162
L G + YD SPE + E+I D +I + + V LK++G
Sbjct: 18 WDPLEFLGELTV-YDRTSPEEVVERIKDADIVIT-NKVVLDAEVLAQLP-NLKLIGVLAT 74
Query: 163 GIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRS-- 220
G +NVDL AA E G V N P +T + A+H ALL ++AR V+ + +KAG+W +S
Sbjct: 75 GYNNVDLAAAKERGITVTNVPGYSTDSVAQHTFALLLALARLVAYHNDVVKAGEWQKSPD 134
Query: 221 ----KYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVS 276
Y + L GKTL ++G+G +G VAR A+ GM V+ + + VS
Sbjct: 135 FCFWDYPIIELAGKTLGIIGYGNIGQAVARIARAFGMKVLFAERKGAPP----LREGYVS 190
Query: 277 FDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSG 336
D+ LA +D ISLH PL P T + N E AKMK G ++N ARGG++DE+AL AL+SG
Sbjct: 191 LDELLAQSDVISLHCPLTPETRNLINAEELAKMKPGAILINTARGGLVDEQALADALNSG 250
Query: 337 VVAQAALDVFTEEPPAKDSKLVQ-HENVTVTPHLGASTKEAQE 378
+A A LDV ++EPP D+ L++ N+ +TPH+ +++EA++
Sbjct: 251 KIAGAGLDVLSQEPPRADNPLLKAAPNLIITPHIAWASREARQ 293
|
2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine yydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 307 |
| >gnl|CDD|240653 cd12176, PGDH_3, Phosphoglycerate dehydrogenases, NAD-binding and catalytic domains | Back alignment and domain information |
|---|
Score = 241 bits (617), Expect = 9e-75
Identities = 112/292 (38%), Positives = 168/292 (57%), Gaps = 13/292 (4%)
Query: 106 ILRSFG-NVECLYD-LSPEALCEKISQCDALIVRSGTKVTRSVFEAANGKLKVVGRAGVG 163
+ R+ G VE L L + L E + L +RS T++T V EAA KL +G +G
Sbjct: 16 LFRAGGIEVERLKGALDEDELIEALKDVHLLGIRSKTQLTEEVLEAAP-KLLAIGCFCIG 74
Query: 164 IDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSKYV 223
+ VDL AA + G V NAP +NT + AE I + +AR + +A+ G W +S
Sbjct: 75 TNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGEIIMLARRLPDRNAAAHRGIWNKSATG 134
Query: 224 GVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVG--VELVSFDQAL 281
+ GKTL ++G+G +GS+++ A+ LGM VI +D + +G ++ S ++ L
Sbjct: 135 SHEVRGKTLGIIGYGHIGSQLSVLAEALGMRVIFYD----IAEKLPLGNARQVSSLEELL 190
Query: 282 ATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQA 341
A ADF++LH+P P+T + E A+MKKG ++N +RG V+D +AL AL SG +A A
Sbjct: 191 AEADFVTLHVPATPSTKNMIGAEEIAQMKKGAILINASRGTVVDIDALAEALRSGHLAGA 250
Query: 342 ALDVFTEEPPAKD----SKLVQHENVTVTPHLGASTKEAQEGVAIEIAEAVV 389
A+DVF EEP + S L NV +TPH+G ST+EAQE + +E+A +V
Sbjct: 251 AVDVFPEEPASNGEPFSSPLQGLPNVILTPHIGGSTEEAQENIGLEVAGKLV 302
|
Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases. PGDH in E. coli and Mycobacterium tuberculosis form tetramers, with subunits containing a Rossmann-fold NAD binding domain. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Length = 304 |
| >gnl|CDD|183914 PRK13243, PRK13243, glyoxylate reductase; Reviewed | Back alignment and domain information |
|---|
Score = 238 bits (608), Expect = 3e-73
Identities = 120/327 (36%), Positives = 186/327 (56%), Gaps = 12/327 (3%)
Query: 90 KPTILVSEKLGEAGLAILRSFGNVECLYDLSP---EALCEKISQCDALIVRSGTKVTRSV 146
KP + ++ ++ E G+ +L VE D E L EK+ DAL+ ++ V
Sbjct: 2 KPKVFITREIPENGIEMLEEHFEVEVWEDEREIPREVLLEKVRDVDALVTMLSERIDCEV 61
Query: 147 FEAANGKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVS 206
FEAA +L++V VG DN+D++ AT G V N P T A A+ ALL + AR +
Sbjct: 62 FEAAP-RLRIVANYAVGYDNIDVEEATRRGIYVTNTPGVLTEATADFAWALLLATARRLV 120
Query: 207 QADASIKAGKWLRSK-------YVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHD 259
+AD +++G+W R ++G + GKT+ ++GFG++G VARRAKG GM ++ +
Sbjct: 121 EADHFVRSGEWKRRGVAWHPLMFLGYDVYGKTIGIIGFGRIGQAVARRAKGFGMRILYYS 180
Query: 260 PYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVA 319
+ + +G E ++ L +DF+SLH+PL T + N+E MK +VN A
Sbjct: 181 RTRKPEAEKELGAEYRPLEELLRESDFVSLHVPLTKETYHMINEERLKLMKPTAILVNTA 240
Query: 320 RGGVIDEEALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKEAQEG 379
RG V+D +ALV+AL G +A A LDVF EE P + +L +NV + PH+G++T EA+EG
Sbjct: 241 RGKVVDTKALVKALKEGWIAGAGLDVFEEE-PYYNEELFSLKNVVLAPHIGSATFEAREG 299
Query: 380 VAIEIAEAVVGALRGELSATAINAPMV 406
+A +AE ++ RGE+ T +N +V
Sbjct: 300 MAELVAENLIAFKRGEVPPTLVNREVV 326
|
Length = 333 |
| >gnl|CDD|240646 cd12169, PGDH_like_1, Putative D-3-Phosphoglycerate Dehydrogenases | Back alignment and domain information |
|---|
Score = 235 bits (602), Expect = 2e-72
Identities = 107/295 (36%), Positives = 162/295 (54%), Gaps = 10/295 (3%)
Query: 102 AGLAILRSFGNVECLYDLSPEALCEKISQCDALIV-RSGTKVTRSVFEAANGKLKVVGRA 160
A + F + + L +AL E+++ DA+++ R T ++ E LK++
Sbjct: 22 DDRAEVTVFND----HLLDEDALAERLAPFDAIVLMRERTPFPAALLER-LPNLKLLVTT 76
Query: 161 GVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRS 220
G+ ++DL AA E G +V A AE AL+ ++ARN+ + DA+++AG W +
Sbjct: 77 GMRNASIDLAAAKERGIVVCGTG-GGPTATAELTWALILALARNLPEEDAALRAGGWQTT 135
Query: 221 KYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVEL-VSFDQ 279
+G L GKTL ++G G++G+ VAR + GM VIA A++A A GVE VS ++
Sbjct: 136 --LGTGLAGKTLGIVGLGRIGARVARIGQAFGMRVIAWSSNLTAERAAAAGVEAAVSKEE 193
Query: 280 ALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVA 339
AT+D +SLH+ L+ T + E A MK +VN +RG ++DE AL+ AL +G +A
Sbjct: 194 LFATSDVVSLHLVLSDRTRGLVGAEDLALMKPTALLVNTSRGPLVDEGALLAALRAGRIA 253
Query: 340 QAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKEAQEGVAIEIAEAVVGALRG 394
AALDVF EP D L NV +TPH+G T+EA EG + E + L G
Sbjct: 254 GAALDVFDVEPLPADHPLRGLPNVLLTPHIGYVTEEAYEGFYGQAVENIAAWLAG 308
|
Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily, which also include groups such as L-alanine dehydrogenase and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Many, not all, members of this family are dimeric. Length = 308 |
| >gnl|CDD|240645 cd12168, Mand_dh_like, D-Mandelate Dehydrogenase-like dehydrogenases | Back alignment and domain information |
|---|
Score = 233 bits (597), Expect = 1e-71
Identities = 101/242 (41%), Positives = 139/242 (57%), Gaps = 7/242 (2%)
Query: 154 LKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIK 213
LK++ AG G D +D+ A T+ G V N P A A A+ + L+ RN S+A+ S +
Sbjct: 77 LKIIAHAGAGYDQIDVDALTKRGIQVSNTPGAVDEATADTALFLILGALRNFSRAERSAR 136
Query: 214 AGKWLRSK--YVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPY-APADKARAV 270
AGKW + GKTL ++G G +G +AR+A GM +I H+ P + +A+
Sbjct: 137 AGKWRGFLDLTLAHDPRGKTLGILGLGGIGKAIARKAAAFGMKIIYHNRSRLPEELEKAL 196
Query: 271 GVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALV 330
VS D+ LA +D +SL+ PL T + N + FAKMK GV IVN ARG VIDE+ALV
Sbjct: 197 ATYYVSLDELLAQSDVVSLNCPLTAATRHLINKKEFAKMKDGVIIVNTARGAVIDEDALV 256
Query: 331 RALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKEAQ---EGVAIEIAEA 387
AL+SG VA A LDVF EP + L++ NVT+ PH+G T E Q E + +E EA
Sbjct: 257 DALESGKVASAGLDVFENEPEV-NPGLLKMPNVTLLPHMGTLTVETQEKMEELVLENIEA 315
Query: 388 VV 389
+
Sbjct: 316 FL 317
|
D-Mandelate dehydrogenase (D-ManDH), identified as an enzyme that interconverts benzoylformate and D-mandelate, is a D-2-hydroxyacid dehydrogenase family member that catalyzes the conversion of c3-branched 2-ketoacids. D-ManDH exhibits broad substrate specificities for 2-ketoacids with large hydrophobic side chains, particularly those with C3-branched side chains. 2-hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Glycerate dehydrogenase catalyzes the reaction (R)-glycerate + NAD+ to hydroxypyruvate + NADH + H+. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 321 |
| >gnl|CDD|240620 cd01619, LDH_like, D-Lactate and related Dehydrogenases, NAD-binding and catalytic domains | Back alignment and domain information |
|---|
Score = 229 bits (586), Expect = 4e-70
Identities = 112/307 (36%), Positives = 159/307 (51%), Gaps = 17/307 (5%)
Query: 105 AILRSFG-NVEC-LYDLSPEALCEKISQCDALIVRSGTKVTRSVFEAANGKLKVVGRAGV 162
IL++ G +VE Y L+ + E DA++ K+ + + A G LK +
Sbjct: 18 EILKAGGVDVEIVTYLLNDDETAELAKGADAILTAFTDKIDAELLDKAPG-LKFISLRAT 76
Query: 163 GIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSKY 222
G DN+DL A E G V N P + A AEH IAL+ ++ RN D K +
Sbjct: 77 GYDNIDLDYAKELGIGVTNVPEYSPNAVAEHTIALILALLRNRKYIDERDKNQDLQDAGV 136
Query: 223 VGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALA 282
+G L +T+ V+G GK+G VA+RAKG GM VIA+DP+ + GV+ VS ++
Sbjct: 137 IGRELEDQTVGVVGTGKIGRAVAQRAKGFGMKVIAYDPFRNPELE-DKGVKYVSLEELFK 195
Query: 283 TADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAA 342
+D ISLH+PL P + N+E F MKKGV I+N ARG ++D EAL+ ALDSG + A
Sbjct: 196 NSDIISLHVPLTPENHHMINEEAFKLMKKGVIIINTARGSLVDTEALIEALDSGKIFGAG 255
Query: 343 LDVFTEEPP-------------AKDSKLVQHENVTVTPHLGASTKEAQEGVAIEIAEAVV 389
LDV +E P A ++ L + NV +TPH T +A + + E +V
Sbjct: 256 LDVLEDETPDLLKDLEGEIFKDALNALLGRRPNVIITPHTAFYTDDALKNMVEISCENIV 315
Query: 390 GALRGEL 396
L GE
Sbjct: 316 DFLEGEE 322
|
D-Lactate dehydrogenase (LDH) catalyzes the interconversion of pyruvate and lactate, and is a member of the 2-hydroxyacid dehydrogenase family. LDH is homologous to D-2-Hydroxyisocaproic acid dehydrogenase (D-HicDH) and shares the 2 domain structure of formate dehydrogenase. D-HicDH is a NAD-dependent member of the hydroxycarboxylate dehydrogenase family, and shares the Rossmann fold typical of many NAD binding proteins. D-HicDH from Lactobacillus casei forms a monomer and catalyzes the reaction R-CO-COO(-) + NADH + H+ to R-COH-COO(-) + NAD+. Similar to the structurally distinct L-HicDH, D-HicDH exhibits low side-chain R specificity, accepting a wide range of 2-oxocarboxylic acid side chains. (R)-2-hydroxyglutarate dehydrogenase (HGDH) catalyzes the NAD-dependent reduction of 2-oxoglutarate to (R)-2-hydroxyglutarate. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 323 |
| >gnl|CDD|240644 cd12167, 2-Hacid_dh_8, Putative D-isomer specific 2-hydroxyacid dehydrogenases | Back alignment and domain information |
|---|
Score = 217 bits (554), Expect = 3e-65
Identities = 97/281 (34%), Positives = 145/281 (51%), Gaps = 8/281 (2%)
Query: 99 LGEAGLAILRSFGNV---ECLYDLSPEALCEKISQCDALIVRSGT-KVTRSVFEAANGKL 154
G A LA L + V D + E L ++ + L+ GT + + A +L
Sbjct: 15 FGPAALARLAALAEVLPPTPDADFAAEELRALLAGVEVLVTGWGTPPLDAELLARA-PRL 73
Query: 155 KVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKA 214
+ V A + + A E G LV +A AN AE +A + R + + A+ +A
Sbjct: 74 RAVVHAAGSVRGLVTDAVWERGILVTSAADANAEPVAEFTLAAILLALRRIPRFAAAYRA 133
Query: 215 GKWL--RSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGV 272
G+ ++ G L G+T+ ++GFG++G V + G+ V+ +DPY PA +A A+GV
Sbjct: 134 GRDWGWPTRRGGRGLYGRTVGIVGFGRIGRAVVELLRPFGLRVLVYDPYLPAAEAAALGV 193
Query: 273 ELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRA 332
ELVS D+ LA +D +SLH PL P T + + A M+ G +N ARG ++DE AL+
Sbjct: 194 ELVSLDELLARSDVVSLHAPLTPETRGMIDARLLALMRDGATFINTARGALVDEAALLAE 253
Query: 333 LDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGAST 373
L SG + +AALDV EP DS L NV +TPH+ ST
Sbjct: 254 LRSGRL-RAALDVTDPEPLPPDSPLRTLPNVLLTPHIAGST 293
|
2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 330 |
| >gnl|CDD|236985 PRK11790, PRK11790, D-3-phosphoglycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 219 bits (560), Expect = 4e-65
Identities = 117/329 (35%), Positives = 179/329 (54%), Gaps = 20/329 (6%)
Query: 90 KPTILVSEKLGEAGLAILRS--FGNVECLYD-LSPEALCEKISQCDALIVRSGTKVTRSV 146
K L+ E + ++ + +LR+ + N+E L E L E I + +RS T++T V
Sbjct: 10 KIKFLLLEGVHQSAVEVLRAAGYTNIEYHKGALDEEELIEAIKDAHFIGIRSRTQLTEEV 69
Query: 147 FEAANGKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVS 206
AA KL +G +G + VDL AA + G V NAP +NT + AE I + + R +
Sbjct: 70 LAAAE-KLVAIGCFCIGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGEIILLLRGIP 128
Query: 207 QADASIKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADK 266
+ +A G W +S + GKTL ++G+G +G++++ A+ LGM V +D DK
Sbjct: 129 EKNAKAHRGGWNKSAAGSFEVRGKTLGIVGYGHIGTQLSVLAESLGMRVYFYDI---EDK 185
Query: 267 -----ARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARG 321
AR VG S ++ LA +D +SLH+P P+T + E A MK G ++N +RG
Sbjct: 186 LPLGNARQVG----SLEELLAQSDVVSLHVPETPSTKNMIGAEELALMKPGAILINASRG 241
Query: 322 GVIDEEALVRALDSGVVAQAALDVFTEEPPAKD----SKLVQHENVTVTPHLGASTKEAQ 377
V+D +AL AL SG +A AA+DVF EP + S L +NV +TPH+G ST+EAQ
Sbjct: 242 TVVDIDALADALKSGHLAGAAIDVFPVEPKSNGDPFESPLRGLDNVILTPHIGGSTQEAQ 301
Query: 378 EGVAIEIAEAVVGALRGELSATAINAPMV 406
E + +E+A +V + +A+N P V
Sbjct: 302 ENIGLEVAGKLVKYSDNGSTLSAVNFPEV 330
|
Length = 409 |
| >gnl|CDD|240663 cd12187, LDH_like_1, D-Lactate and related Dehydrogenase like proteins, NAD-binding and catalytic domains | Back alignment and domain information |
|---|
Score = 209 bits (533), Expect = 3e-62
Identities = 97/259 (37%), Positives = 139/259 (53%), Gaps = 25/259 (9%)
Query: 140 TKVTRSVFEAANGKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPI--ANTVAAAEHGIAL 197
+++ V E +LK++ G D++DL+A E G V N P TVA EH AL
Sbjct: 51 SRLDAEVLEKLP-RLKLIATRSTGFDHIDLEACRERGIAVCNVPDYGEATVA--EHAFAL 107
Query: 198 LASMARNVSQADASIKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIA 257
L +++R + +A + G + ++ G L GKTL V+G G++G VAR A+G GM V+A
Sbjct: 108 LLALSRKLREAIERTRRGDFSQAGLRGFELAGKTLGVVGTGRIGRRVARIARGFGMKVLA 167
Query: 258 HDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVN 317
+D + A +G VS ++ L +D ISLH+P P T + N E FA MK G ++N
Sbjct: 168 YDVVPDEELAERLGFRYVSLEELLQESDIISLHVPYTPQTHHLINRENFALMKPGAVLIN 227
Query: 318 VARGGVIDEEALVRALDSGVVAQAALDVFTEEP-------------PAKDSK-------L 357
ARG V+D EALVRAL G +A A LDV +E +D K L
Sbjct: 228 TARGAVVDTEALVRALKEGKLAGAGLDVLEQEEVLREEAELFREDVSPEDLKKLLADHAL 287
Query: 358 VQHENVTVTPHLGASTKEA 376
++ NV +TPH+ +TKEA
Sbjct: 288 LRKPNVIITPHVAYNTKEA 306
|
D-Lactate dehydrogenase (LDH) catalyzes the interconversion of pyruvate and lactate, and is a member of the 2-hydroxyacid dehydrogenase family. LDH is homologous to D-2-Hydroxyisocaproic acid dehydrogenase(D-HicDH) and shares the 2 domain structure of formate dehydrogenase. D-2-hydroxyisocaproate dehydrogenase-like (HicDH) proteins are NAD-dependent members of the hydroxycarboxylate dehydrogenase family, and share the Rossmann fold typical of many NAD binding proteins. HicDH from Lactobacillus casei forms a monomer and catalyzes the reaction R-CO-COO(-) + NADH + H+ to R-COH-COO(-) + NAD+. D-HicDH, like the structurally distinct L-HicDH, exhibits low side-chain R specificity, accepting a wide range of 2-oxocarboxylic acid side chains. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 329 |
| >gnl|CDD|240656 cd12179, 2-Hacid_dh_14, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains | Back alignment and domain information |
|---|
Score = 205 bits (525), Expect = 2e-61
Identities = 102/305 (33%), Positives = 154/305 (50%), Gaps = 16/305 (5%)
Query: 93 ILVSEKLGEAGLAILRSFG-NVECLYDLSPEALCEKISQCDALIVRSGTKVTRSVFEAAN 151
IL+ +K + +L + G V+ +S E + I Q D LI+RS + + E A
Sbjct: 2 ILIIDKNHPSLTELLEALGFEVDYDPTISREEILAIIPQYDGLIIRSRFPIDKEFIEKAT 61
Query: 152 GKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADAS 211
LK + RAG G++N+DL+ A E G + NAP N A EH + +L ++ +++AD
Sbjct: 62 -NLKFIARAGAGLENIDLEYAKEKGIELFNAPEGNRDAVGEHALGMLLALFNKLNRADQE 120
Query: 212 IKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPY-APADKARAV 270
++ G W R GV L+GKT+ ++G+G +G A+R G G VIA+D Y D
Sbjct: 121 VRNGIWDREGNRGVELMGKTVGIIGYGNMGKAFAKRLSGFGCKVIAYDKYKNFGDA---- 176
Query: 271 GVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALV 330
E VS + AD +SLH+PL P T + N E + KK +N ARG V+ + LV
Sbjct: 177 YAEQVSLETLFKEADILSLHIPLTPETRGMVNKEFISSFKKPFYFINTARGKVVVTKDLV 236
Query: 331 RALDSGVVAQAALDVF---------TEEPPAKDSKLVQHENVTVTPHLGASTKEAQEGVA 381
+AL SG + A LDV P L++ V +TPH+ T E+ E +A
Sbjct: 237 KALKSGKILGACLDVLEYEKASFESIFNQPEAFEYLIKSPKVILTPHIAGWTFESYEKIA 296
Query: 382 IEIAE 386
+ +
Sbjct: 297 EVLVD 301
|
2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 306 |
| >gnl|CDD|240634 cd12157, PTDH, Thermostable Phosphite Dehydrogenase | Back alignment and domain information |
|---|
Score = 204 bits (522), Expect = 9e-61
Identities = 102/319 (31%), Positives = 161/319 (50%), Gaps = 15/319 (4%)
Query: 90 KPTILVSEKLGEAGLAILRSFGNVEC-LYD--LSPEALCEKISQCDALIVRSGTKVTRSV 146
KP ++++ K+ L +L+ V D LS E L + D L+ ++
Sbjct: 1 KPKVVITHKVHPEVLELLKPHCEVISNQTDEPLSREELLRRCKDADGLMAFMPDRIDADF 60
Query: 147 FEAANGKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVS 206
+A +LK++ A G DN D++A T G V P T AE I LL + R++
Sbjct: 61 LDACP-RLKIIACALKGYDNFDVEACTARGIWVTIVPDLLTEPTAELTIGLLIGLGRHIL 119
Query: 207 QADASIKAGK--WLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA-P 263
D +++GK R K+ G L GKT+ ++G G +G +ARR G G ++ +DP+
Sbjct: 120 AGDRFVRSGKFGGWRPKFYGTGLDGKTVGILGMGALGRAIARRLSGFGATLLYYDPHPLD 179
Query: 264 ADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGV 323
+ +A+ + V D+ L ++DF+ L +PL P T + N E AKMK G +VN RG V
Sbjct: 180 QAEEQALNLRRVELDELLESSDFLVLALPLTPDTLHLINAEALAKMKPGALLVNPCRGSV 239
Query: 324 IDEEALVRALDSGVVAQAALDVFTEEPPAKDSK--------LVQHENVTVTPHLGASTKE 375
+DE A+ AL SG + A DVF E A+ + L QH+ TPH+G++ E
Sbjct: 240 VDEAAVAEALKSGHLGGYAADVFEMEDWARPDRPRSIPQELLDQHDRTVFTPHIGSAVDE 299
Query: 376 AQEGVAIEIAEAVVGALRG 394
+ + +E A ++ AL+G
Sbjct: 300 VRLEIELEAALNILQALQG 318
|
Phosphite dehydrogenase (PTDH), a member of the D-specific 2-hydroxyacid dehydrogenase family, catalyzes the NAD-dependent formation of phosphate from phosphite (hydrogen phosphonate). PTDH has been suggested as a potential enzyme for cofactor regeneration systems. The D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD-binding domain. Length = 318 |
| >gnl|CDD|240659 cd12183, LDH_like_2, D-Lactate and related Dehydrogenases, NAD-binding and catalytic domains | Back alignment and domain information |
|---|
Score = 199 bits (508), Expect = 1e-58
Identities = 106/271 (39%), Positives = 146/271 (53%), Gaps = 21/271 (7%)
Query: 131 CDALIVRSGTKVTRSVFE--AANGKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTV 188
DA+ V + V E A G +K++ G +NVDL+AA E G VV P +
Sbjct: 45 FDAVCVFVNDDLDAPVLEKLAELG-VKLIALRCAGFNNVDLKAAKELGITVVRVPAYSPY 103
Query: 189 AAAEHGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRA 248
A AEH +ALL ++ R + +A ++ G + +G L GKT+ V+G GK+G AR
Sbjct: 104 AVAEHAVALLLALNRKIHRAYNRVREGNFSLDGLLGFDLHGKTVGVIGTGKIGQAFARIL 163
Query: 249 KGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAK 308
KG G V+A+DPY P + +GVE V D+ LA +D ISLH PL P T + N ET AK
Sbjct: 164 KGFGCRVLAYDPY-PNPELAKLGVEYVDLDELLAESDIISLHCPLTPETHHLINAETIAK 222
Query: 309 MKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEEPPA--KD-----------S 355
MK GV ++N +RGG+ID +AL+ AL SG + LDV+ EE +D +
Sbjct: 223 MKDGVMLINTSRGGLIDTKALIEALKSGKIGGLGLDVYEEEAGLFFEDHSDEIIQDDVLA 282
Query: 356 KLVQHENVTVTPHLGASTKEAQEGVAIEIAE 386
+L+ NV +T H TKEA IAE
Sbjct: 283 RLLSFPNVLITGHQAFFTKEALT----NIAE 309
|
D-Lactate dehydrogenase (LDH) catalyzes the interconversion of pyruvate and lactate, and is a member of the 2-hydroxyacid dehydrogenase family. LDH is homologous to D-2-hydroxyisocaproic acid dehydrogenase (D-HicDH) and shares the 2-domain structure of formate dehydrogenase. D-2-hydroxyisocaproate dehydrogenase-like (HicDH) proteins are NAD-dependent members of the hydroxycarboxylate dehydrogenase family, and share the Rossmann fold typical of many NAD binding proteins. HicDH from Lactobacillus casei forms a monomer and catalyzes the reaction R-CO-COO(-) + NADH + H+ to R-COH-COO(-) + NAD+. D-HicDH, like the structurally distinct L-HicDH, exhibits low side-chain R specificity, accepting a wide range of 2-oxocarboxylic acid side chains. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 328 |
| >gnl|CDD|240638 cd12161, GDH_like_1, Putative glycerate dehydrogenase and related proteins of the D-specific 2-hydroxy dehydrogenase family | Back alignment and domain information |
|---|
Score = 198 bits (506), Expect = 2e-58
Identities = 98/259 (37%), Positives = 146/259 (56%), Gaps = 5/259 (1%)
Query: 121 PEALCEKISQCDALIVRSGTKVTRSVFEAANGKLKVVGRAGVGIDNVDLQAATEFGCLVV 180
L E+ D +++ + + V EA LK++ A G+D+VDL+A E G V
Sbjct: 39 TAELIERSKDADIVMI-ANMPLPGEVIEACK-NLKMISVAFTGVDHVDLEACKERGITVS 96
Query: 181 NAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGKTLAVMGFGKV 240
NA +T A AE I L + RN+ DA+++AG ++ +G L GKT+ ++G G +
Sbjct: 97 NAAGYSTEAVAELTIGLAIDLLRNIVPCDAAVRAGG-TKAGLIGRELAGKTVGIVGTGAI 155
Query: 241 GSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKI 300
G VAR K G V+A+ ++A+A+G+E VS D+ LA +D +SLH+PLN T +
Sbjct: 156 GLRVARLFKAFGCKVLAYSRS-EKEEAKALGIEYVSLDELLAESDIVSLHLPLNDETKGL 214
Query: 301 FNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEEPP-AKDSKLVQ 359
E A MK+ ++N ARG V+D EAL AL+ G +A A +DVF EPP D L+
Sbjct: 215 IGKEKLALMKESAILINTARGPVVDNEALADALNEGKIAGAGIDVFDMEPPLPADYPLLH 274
Query: 360 HENVTVTPHLGASTKEAQE 378
N +TPH+ +T+EA E
Sbjct: 275 APNTILTPHVAFATEEAME 293
|
This group contains a variety of proteins variously identified as glycerate dehydrogenase (GDH, aka Hydroxypyruvate Reductase) and other enzymes of the 2-hydroxyacid dehydrogenase family. GDH catalyzes the reversible reaction of (R)-glycerate + NAD+ to hydroxypyruvate + NADH + H+. 2-hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann-fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 315 |
| >gnl|CDD|240625 cd05300, 2-Hacid_dh_1, Putative D-isomer specific 2-hydroxyacid dehydrogenase | Back alignment and domain information |
|---|
Score = 197 bits (504), Expect = 3e-58
Identities = 97/294 (32%), Positives = 142/294 (48%), Gaps = 10/294 (3%)
Query: 91 PTILVSEKLGEAGLAILRSFGNVECLYDLSPEALCEKISQCDALIVRSGTKVTRSVFEAA 150
ILV L + L LR+ L ++ E L E+++ D L+ G + AA
Sbjct: 1 MKILVLSPLDDEHLERLRAAAPGAELRVVTAEELTEELADADVLL---GNPPLPELLPAA 57
Query: 151 NGKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADA 210
+L+ + G+D + E ++ NA AE+ + + + AR + +
Sbjct: 58 -PRLRWIQSTSAGVDALLFPELLERDVVLTNARGIFGPPIAEYVLGYMLAFARKLPRYAR 116
Query: 211 SIKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIA---HDPYAPADKA 267
+ +W R V L GKT+ ++G G +G E+ARRAK GM VI AP
Sbjct: 117 NQAERRWQRRGPVR-ELAGKTVLIVGLGDIGREIARRAKAFGMRVIGVRRSGRPAPPVVD 175
Query: 268 RAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEE 327
+ D+ L AD++ +PL P T +FN E FA MK G ++NV RG V+DE+
Sbjct: 176 EVYTPD--ELDELLPEADYVVNALPLTPETRGLFNAERFAAMKPGAVLINVGRGSVVDED 233
Query: 328 ALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKEAQEGVA 381
AL+ AL+SG +A AALDVF EEP DS L NV +TPH+ + E V
Sbjct: 234 ALIEALESGRIAGAALDVFEEEPLPADSPLWDLPNVIITPHISGDSPSYPERVV 287
|
2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomains but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Formate dehydrogenase (FDH) catalyzes the NAD+-dependent oxidation of formate ion to carbon dioxide with the concomitant reduction of NAD+ to NADH. FDHs of this family contain no metal ions or prosthetic groups. Catalysis occurs though direct transfer of the hydride ion to NAD+ without the stages of acid-base catalysis typically found in related dehydrogenases. FDHs are found in all methylotrophic microorganisms in energy production and in the stress responses of plants. Length = 313 |
| >gnl|CDD|240662 cd12186, LDH, D-Lactate dehydrogenase and D-2-Hydroxyisocaproic acid dehydrogenase (D-HicDH), NAD-binding and catalytic domains | Back alignment and domain information |
|---|
Score = 198 bits (505), Expect = 4e-58
Identities = 89/278 (32%), Positives = 134/278 (48%), Gaps = 25/278 (8%)
Query: 118 DLSPEALCEKISQCDALIVRSGTKVTRSVFEA-ANGKLKVVGRAGVGIDNVDLQAATEFG 176
L+PE + + D ++V+ V+E A +K + G+D +DL A E G
Sbjct: 33 LLTPETV-DLAKGYDGVVVQQTLPYDEEVYEKLAEYGIKQIALRSAGVDMIDLDLAKENG 91
Query: 177 CLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGK-----T 231
+ N P + A AE + ++ RN + D + G + + L+G+ T
Sbjct: 92 LKITNVPAYSPRAIAEFAVTQALNLLRNTPEIDRRVAKGDFRWAP----GLIGREIRDLT 147
Query: 232 LAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHM 291
+ ++G G++GS A+ KG G VIA+DPY P + + S + L AD ISLH+
Sbjct: 148 VGIIGTGRIGSAAAKIFKGFGAKVIAYDPY-PNPELEKFLLYYDSLEDLLKQADIISLHV 206
Query: 292 PLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEE-- 349
PL + N E FAKMK G +VN ARGG++D +AL+ ALDSG +A AALD + E
Sbjct: 207 PLTKENHHLINAEAFAKMKDGAILVNAARGGLVDTKALIDALDSGKIAGAALDTYENETG 266
Query: 350 -----------PPAKDSKLVQHENVTVTPHLGASTKEA 376
+L+ NV +TPH+ T A
Sbjct: 267 YFNKDWSGKEIEDEVLKELIAMPNVLITPHIAFYTDTA 304
|
D-Lactate dehydrogenase (LDH) catalyzes the interconversion of pyruvate and lactate, and is a member of the 2-hydroxyacid dehydrogenases family. LDH is homologous to D-2-hydroxyisocaproic acid dehydrogenase(D-HicDH) and shares the 2 domain structure of formate dehydrogenase. D-HicDH is a NAD-dependent member of the hydroxycarboxylate dehydrogenase family, and shares the Rossmann fold typical of many NAD binding proteins. HicDH from Lactobacillus casei forms a monomer and catalyzes the reaction R-CO-COO(-) + NADH + H+ to R-COH-COO(-) + NAD+. D-HicDH, like the structurally distinct L-HicDH, exhibits low side-chain R specificity, accepting a wide range of 2-oxocarboxylic acid side chains. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 329 |
| >gnl|CDD|240642 cd12165, 2-Hacid_dh_6, Putative D-isomer specific 2-hydroxyacid dehydrogenases | Back alignment and domain information |
|---|
Score = 175 bits (446), Expect = 6e-50
Identities = 89/295 (30%), Positives = 134/295 (45%), Gaps = 26/295 (8%)
Query: 116 LYDLSPEALCEKISQCDALIVRSGTKVTRSVFEAANGKLKVVGRAGVGIDNVDLQAATEF 175
+ +L EA E + D L+ G ++T+ AA +LK++ G+D++ L+ E
Sbjct: 26 VPELPDEAAEEALEDADVLV---GGRLTKEEALAALKRLKLIQVPSAGVDHLPLERLPE- 81
Query: 176 GCLVVNAPIANT----VAAAEHGIALLASMARNVSQADASIKAGKWLRSKYVGV---SLV 228
+AN A AEH +AL+ ++A+ + + D ++ G W L
Sbjct: 82 -----GVVVANNHGNSPAVAEHALALILALAKRIVEYDNDLRRGIWHGRAGEEPESKELR 136
Query: 229 GKTLAVMGFGKVGSEVARRAKGLGMNVIA--HDPYAPADKARAVGVELVSFDQALATADF 286
GKT+ ++G+G +G E+AR K GM VI P + D+AL AD
Sbjct: 137 GKTVGILGYGHIGREIARLLKAFGMRVIGVSRSPKEDEGADFVGTLS--DLDEALEQADV 194
Query: 287 ISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVF 346
+ + +PL T + A MK G +VNV RG V+DEEAL AL +A AA+DV+
Sbjct: 195 VVVALPLTKQTRGLIGAAELAAMKPGAILVNVGRGPVVDEEALYEALKERPIAGAAIDVW 254
Query: 347 TEEPPAKDSKLVQH------ENVTVTPHLGASTKEAQEGVAIEIAEAVVGALRGE 395
P D NV ++PH T+E E AE + LRGE
Sbjct: 255 WRYPSRGDPVAPSRYPFHELPNVIMSPHNAGWTEETFRRRIDEAAENIRRYLRGE 309
|
2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 314 |
| >gnl|CDD|240633 cd12156, HPPR, Hydroxy(phenyl)pyruvate Reductase, D-isomer-specific 2-hydroxyacid-related dehydrogenase | Back alignment and domain information |
|---|
Score = 174 bits (445), Expect = 8e-50
Identities = 90/297 (30%), Positives = 143/297 (48%), Gaps = 24/297 (8%)
Query: 91 PTILVSEKLGEAGLAILRSFGNVECLYDLS--PEALCEKISQCDALIVRSGTKVTRSVFE 148
P +L L LA L + V L++ + L E + A++ T ++ ++
Sbjct: 1 PDVLQLGPLPPELLAELEARFTVHRLWEAADPAALLAEHGGRIRAVVTNGETGLSAALIA 60
Query: 149 AANGKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQA 208
A L+++ GVG D +DL AA G V N P T A+ + LL ++ R + A
Sbjct: 61 ALP-ALELIASFGVGYDGIDLDAARARGIRVTNTPGVLTDDVADLAVGLLLAVLRRIPAA 119
Query: 209 DASIKAGKWLRSKY-VGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHD-------P 260
D ++AG+W + + + + GK + ++G G++G +ARR + GM + H P
Sbjct: 120 DRFVRAGRWPKGAFPLTRKVSGKRVGIVGLGRIGRAIARRLEAFGMEIAYHGRRPKPDVP 179
Query: 261 YAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKM-KKGVRIVNVA 319
Y +EL A +D + + P P T + N E + GV +VNVA
Sbjct: 180 YRYYASL----LELA------AESDVLVVACPGGPATRHLVNAEVLEALGPDGV-LVNVA 228
Query: 320 RGGVIDEEALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKEA 376
RG V+DE AL+ AL G +A A LDVF E P + L+ +NV +TPH+ ++T E
Sbjct: 229 RGSVVDEAALIAALQEGRIAGAGLDVFENE-PNVPAALLDLDNVVLTPHIASATVET 284
|
Hydroxy(phenyl)pyruvate reductase (HPPR) catalyzes the NADP-dependent reduction of hydroxyphenylpyruvates, hydroxypyruvate, or pyruvate to its respective lactate. HPPR acts as a dimer and is related to D-isomer-specific 2-hydroxyacid dehydrogenases, a superfamily that includes groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 301 |
| >gnl|CDD|180588 PRK06487, PRK06487, glycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 173 bits (440), Expect = 5e-49
Identities = 100/307 (32%), Positives = 152/307 (49%), Gaps = 18/307 (5%)
Query: 99 LGEAGLAILRSFGNVECLYDLS-PEALCEKISQCDALIVRSGTKVTRSVFEAANGKLKVV 157
LG+ L+ L + L+D + PE + E++ I + + AA +LK++
Sbjct: 13 LGDLDLSPLEQAFDELQLHDATTPEQVAERLRGAQVAISNK-VALDAAAL-AAAPQLKLI 70
Query: 158 GRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKW 217
A G +NVDL AA E G V N T + A+H +ALL ++A + ++ AG+W
Sbjct: 71 LVAATGTNNVDLAAARERGITVCNCQGYGTPSVAQHTLALLLALATRLPDYQQAVAAGRW 130
Query: 218 LRSKYVG------VSLVGKTLAVMGFGKVGSEVARRAKGLGMNV-IAHDPYAPADKARAV 270
+S V L GKTL ++G G++G VAR A+ GM V I P PA R
Sbjct: 131 QQSSQFCLLDFPIVELEGKTLGLLGHGELGGAVARLAEAFGMRVLIGQLPGRPARPDR-- 188
Query: 271 GVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALV 330
+ D+ L D ++LH PL T + A MK G ++N ARGG++DE+AL
Sbjct: 189 ----LPLDELLPQVDALTLHCPLTEHTRHLIGARELALMKPGALLINTARGGLVDEQALA 244
Query: 331 RALDSGVVAQAALDVFTEEPPAKDSKLVQ--HENVTVTPHLGASTKEAQEGVAIEIAEAV 388
AL SG + AA DV + EPP + L+ + VTPH ++EA++ + ++AE
Sbjct: 245 DALRSGHLGGAATDVLSVEPPVNGNPLLAPDIPRLIVTPHSAWGSREARQRIVGQLAENA 304
Query: 389 VGALRGE 395
G+
Sbjct: 305 RAFFAGK 311
|
Length = 317 |
| >gnl|CDD|185307 PRK15409, PRK15409, bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional | Back alignment and domain information |
|---|
Score = 169 bits (430), Expect = 1e-47
Identities = 99/320 (30%), Positives = 160/320 (50%), Gaps = 9/320 (2%)
Query: 90 KPTILVSEKLGEAGLAILRSFGNVECLYDLSPE---ALCEKISQCDALIVRSGTKVTRSV 146
KP++++ + L + L L V + +LSPE ++ + L+ SG KV ++
Sbjct: 2 KPSVILYKALPDDLLQRLEEHFTVTQVANLSPETVEQHAAAFAEAEGLL-GSGEKVDAAL 60
Query: 147 FEAANGKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVS 206
E KL+ VG DN D+ A T L+++ P T A+ +AL+ S AR V
Sbjct: 61 LEKMP-KLRAASTISVGYDNFDVDALTARKILLMHTPTVLTETVADTLMALVLSTARRVV 119
Query: 207 QADASIKAGKWLRS---KYVGVSLVGKTLAVMGFGKVGSEVARRAK-GLGMNVIAHDPYA 262
+ +KAG+W S + G + KTL ++G G++G +A+RA G M ++ +
Sbjct: 120 EVAERVKAGEWTASIGPDWFGTDVHHKTLGIVGMGRIGMALAQRAHFGFNMPILYNARRH 179
Query: 263 PADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGG 322
+ D L +DF+ + +PL T +F E FAKMK +N RG
Sbjct: 180 HKEAEERFNARYCDLDTLLQESDFVCIILPLTDETHHLFGAEQFAKMKSSAIFINAGRGP 239
Query: 323 VIDEEALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKEAQEGVAI 382
V+DE AL+ AL G + A LDVF +EP + DS L+ NV PH+G++T E + +A
Sbjct: 240 VVDENALIAALQKGEIHAAGLDVFEQEPLSVDSPLLSLPNVVAVPHIGSATHETRYNMAA 299
Query: 383 EIAEAVVGALRGELSATAIN 402
+ ++ AL+G++ +N
Sbjct: 300 CAVDNLIDALQGKVEKNCVN 319
|
Length = 323 |
| >gnl|CDD|235890 PRK06932, PRK06932, glycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 168 bits (426), Expect = 3e-47
Identities = 87/260 (33%), Positives = 130/260 (50%), Gaps = 16/260 (6%)
Query: 120 SPEALCEKISQCDALIVRSGTKVTRSVFEAANGKLKVVGRAGVGIDNVDLQAATEFGCLV 179
S E E+ D +++ S TR KLK++ G +NVDL AA E G V
Sbjct: 34 SAEQTIERAKDAD-IVITSKVLFTRETLAQLP-KLKLIAITATGTNNVDLVAAKELGIAV 91
Query: 180 VNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSK------YVGVSLVGKTLA 233
N ++ EH + ++ ++ ++ + +W K Y + G TL
Sbjct: 92 KNVTGYSSTTVPEHVLGMIFALKHSLMGWYRDQLSDRWATCKQFCYFDYPITDVRGSTLG 151
Query: 234 VMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPL 293
V G G +G+EV R A+ LGM V+ YA A F++ L AD ++LH PL
Sbjct: 152 VFGKGCLGTEVGRLAQALGMKVL----YAEHKGASVCREGYTPFEEVLKQADIVTLHCPL 207
Query: 294 NPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEEPPAK 353
TT + N ET A MK ++N RG ++DE+AL+ AL++G +A AALDV +EPP K
Sbjct: 208 TETTQNLINAETLALMKPTAFLINTGRGPLVDEQALLDALENGKIAGAALDVLVKEPPEK 267
Query: 354 DSKLVQHE----NVTVTPHL 369
D+ L+Q N+ +TPH+
Sbjct: 268 DNPLIQAAKRLPNLLITPHI 287
|
Length = 314 |
| >gnl|CDD|181414 PRK08410, PRK08410, 2-hydroxyacid dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 167 bits (425), Expect = 5e-47
Identities = 92/316 (29%), Positives = 166/316 (52%), Gaps = 17/316 (5%)
Query: 90 KPTILVSEKLGEAGLAILRSFGNVECLYDL-SPEALCEKISQCDALIVRSGTKVTRSVFE 148
K IL ++ LG+ L++ FG+ + +Y SPE + E+I + +I+ + + + V
Sbjct: 2 KIVILDAKTLGDKDLSVFEEFGDFQ-IYPTTSPEEVIERIKDAN-IIITNKVVIDKEVLS 59
Query: 149 AANGKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQA 208
LK++ G +NVD++ A + G V N +T + A+H A+L S+ ++
Sbjct: 60 QLP-NLKLICITATGTNNVDIEYAKKKGIAVKNVAGYSTESVAQHTFAMLLSLLGRINYY 118
Query: 209 DASIKAGKWLRSK-YVGVS-----LVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA 262
D +K+G++ S + +S + GK ++G G +G VA+ A+ G V+ Y+
Sbjct: 119 DRYVKSGEYSESPIFTHISRPLGEIKGKKWGIIGLGTIGKRVAKIAQAFGAKVVY---YS 175
Query: 263 PADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGG 322
+ K + E VS ++ L T+D IS+H PLN T + + +K G ++NV RGG
Sbjct: 176 TSGKNKNEEYERVSLEELLKTSDIISIHAPLNEKTKNLIAYKELKLLKDGAILINVGRGG 235
Query: 323 VIDEEALVRALDSGVVAQAALDVFTEEPPAKDSKLVQ---HENVTVTPHLGASTKEAQEG 379
+++E+ L +ALD + A LDV +EP K+ L+ E + +TPH+ ++KEA++
Sbjct: 236 IVNEKDLAKALDEKDIY-AGLDVLEKEPMEKNHPLLSIKNKEKLLITPHIAWASKEARKT 294
Query: 380 VAIEIAEAVVGALRGE 395
+ ++ E + L G
Sbjct: 295 LIEKVKENIKDFLEGG 310
|
Length = 311 |
| >gnl|CDD|240635 cd12158, ErythrP_dh, D-Erythronate-4-Phosphate Dehydrogenase NAD-binding and catalytic domains | Back alignment and domain information |
|---|
Score = 166 bits (423), Expect = 2e-46
Identities = 89/271 (32%), Positives = 131/271 (48%), Gaps = 37/271 (13%)
Query: 105 AILRSFGNVECL--YDLSPEALCEKISQCDALIVRSGTKVTRSVFEAANGKLKVVGRAGV 162
+ G V L +++ E L D L+VRS TKV ++ E + K+K VG A +
Sbjct: 13 ELFSPLGEVTYLPGREITAEDL----KDADVLLVRSVTKVNEALLEGS--KVKFVGTATI 66
Query: 163 GIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSKY 222
G D++D E G NAP N + AE+ ++ L +A +
Sbjct: 67 GTDHIDTDYLKERGIGFANAPGCNANSVAEYVLSALLVLA------------------QR 108
Query: 223 VGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALA 282
G SL GKT+ ++G G VGS +ARR + LGMNV+ DP VS ++ LA
Sbjct: 109 QGFSLKGKTVGIVGVGNVGSRLARRLEALGMNVLLCDPPR---AEAEGDPGFVSLEELLA 165
Query: 283 TADFISLHMPLNPT----TSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVV 338
AD I+LH+PL T + +++ A +K G ++N +RG VID +AL+ L G
Sbjct: 166 EADIITLHVPLTRDGEHPTYHLLDEDFLAALKPGQILINASRGAVIDNQALLALLQRGKD 225
Query: 339 AQAALDVFTEEPPAKDSKLVQHENVT-VTPH 368
+ LDV+ EP D +L+ V TPH
Sbjct: 226 LRVVLDVWENEPEI-DLELLDK--VDIATPH 253
|
D-Erythronate-4-phosphate Dehydrogenase (E. coli gene PdxB), a D-specific 2-hydroxyacid dehydrogenase family member, catalyzes the NAD-dependent oxidation of erythronate-4-phosphate, which is followed by transamination to form 4-hydroxy-L-threonine-4-phosphate within the de novo biosynthesis pathway of vitamin B6. D-Erythronate-4-phosphate dehydrogenase has the common architecture shared with D-isomer specific 2-hydroxyacid dehydrogenases but contains an additional C-terminal dimerization domain in addition to an NAD-binding domain and the "lid" domain. The lid domain corresponds to the catalytic domain of phosphoglycerate dehydrogenase and other proteins of the D-isomer specific 2-hydroxyacid dehydrogenase family, which include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Length = 343 |
| >gnl|CDD|240661 cd12185, HGDH_LDH_like, Putative Lactate dehydrogenase and (R)-2-Hydroxyglutarate Dehydrogenase-like proteins, NAD-binding and catalytic domains | Back alignment and domain information |
|---|
Score = 162 bits (412), Expect = 6e-45
Identities = 90/293 (30%), Positives = 138/293 (47%), Gaps = 43/293 (14%)
Query: 112 NVECLYDLSPEALCEKISQ----CDALIVRSGTKVTRSVFEA-ANGKLKVVGRAGVGIDN 166
NVE L+ E L + + D + + +K++ + E +K + +G D+
Sbjct: 24 NVE--VTLTKEPLTLENAHLAEGYDGISILGKSKISAELLEKLKEAGVKYISTRSIGYDH 81
Query: 167 VDLQAATEFGCLVVNAPIA-NTVAAAEHGIALLASMARNVSQA-------DASIKA--GK 216
+DL AA E G V N + N+VA ++ + L+ R Q D S+ G+
Sbjct: 82 IDLDAAKELGIKVSNVTYSPNSVA--DYTVMLMLMALRKYKQIMKRAEVNDYSLGGLQGR 139
Query: 217 WLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVS 276
LR+ VGV +G G++G V + G G ++A+DPY P ++ + E V
Sbjct: 140 ELRNLTVGV---------IGTGRIGQAVIKNLSGFGCKILAYDPY-PNEEVKK-YAEYVD 188
Query: 277 FDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSG 336
D +D I+LH PL T + N E+ AKMK GV I+N ARG +ID EAL+ L+SG
Sbjct: 189 LDTLYKESDIITLHTPLTEETYHLINKESIAKMKDGVIIINTARGELIDTEALIEGLESG 248
Query: 337 VVAQAALDVFTEEP------------PAKD-SKLVQHENVTVTPHLGASTKEA 376
+ AALDV E ++ + L NV +TPH+ T +A
Sbjct: 249 KIGGAALDVIEGEDGIYYNDRKGDILSNRELAILRSFPNVILTPHMAFYTDQA 301
|
This group contains various putative dehydrogenases related to D-lactate dehydrogenase (LDH), (R)-2-hydroxyglutarate dehydrogenase (HGDH), and related enzymes, members of the 2-hydroxyacid dehydrogenases family. LDH catalyzes the interconversion of pyruvate and lactate, and HGDH catalyzes the NAD-dependent reduction of 2-oxoglutarate to (R)-2-hydroxyglutarate. Despite often low sequence identity within this 2-hydroxyacid dehydrogenase family, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 322 |
| >gnl|CDD|240632 cd12155, PGDH_1, Phosphoglycerate Dehydrogenase, 2-hydroxyacid dehydrogenase family | Back alignment and domain information |
|---|
Score = 160 bits (407), Expect = 2e-44
Identities = 71/230 (30%), Positives = 111/230 (48%), Gaps = 29/230 (12%)
Query: 153 KLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASI 212
LK + G+D + L+ + G L+ N +++ AE + + + + + +A +
Sbjct: 60 NLKWIQLYSAGVDYLPLEYIKKKGILLTNNSGIHSIPIAEWIVGYILEIYKGLKKAYKNQ 119
Query: 213 KAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGV 272
K KW + + L GKT+ +G G +G E+A+R K GM VI GV
Sbjct: 120 KEKKW-KMDSSLLELYGKTILFLGTGSIGQEIAKRLKAFGMKVI--------------GV 164
Query: 273 -----------ELVSFDQ---ALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNV 318
+ ++ L AD + +PL T +F++ F +MKKG +NV
Sbjct: 165 NTSGRDVEYFDKCYPLEELDEVLKEADIVVNVLPLTEETHHLFDEAFFEQMKKGALFINV 224
Query: 319 ARGGVIDEEALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPH 368
RG +DE+AL+ AL + + AALDVF EEP KDS L +NV +TPH
Sbjct: 225 GRGPSVDEDALIEALKNKQIRGAALDVFEEEPLPKDSPLWDLDNVLITPH 274
|
Phosphoglycerate Dehydrogenase (PGDH) catalyzes the NAD-dependent conversion of 3-phosphoglycerate into 3-phosphohydroxypyruvate, which is the first step in serine biosynthesis. Over-expression of PGDH has been implicated as supporting proliferation of certain breast cancers, while PGDH deficiency is linked to defects in mammalian central nervous system development. PGDH is a member of the 2-hydroxyacid dehydrogenase family, enzymes that catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann-fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 314 |
| >gnl|CDD|240627 cd05302, FDH, NAD-dependent Formate Dehydrogenase (FDH) | Back alignment and domain information |
|---|
Score = 161 bits (409), Expect = 2e-44
Identities = 80/244 (32%), Positives = 128/244 (52%), Gaps = 5/244 (2%)
Query: 142 VTRSVFEAANGKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASM 201
+T A LK+ AG+G D+VDLQAA + G V +N V+ AEH + ++ +
Sbjct: 74 MTAERIAKAK-NLKLALTAGIGSDHVDLQAANDRGITVAEVTGSNVVSVAEHVVMMILIL 132
Query: 202 ARNVSQADASIKAGKWLRSKYVGVS--LVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHD 259
RN G W + V + L GKT+ +G G++G V RR K ++++ +D
Sbjct: 133 VRNYVPGHEQAIEGGWNVADVVKRAYDLEGKTVGTVGAGRIGLRVLRRLKPFDVHLLYYD 192
Query: 260 PYA-PADKARAVGVELV-SFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVN 317
+ P + + +G+ + ++ D ++++ PL+P T +FN E +KMKKG +VN
Sbjct: 193 RHRLPEEVEKELGLTRHADLEDMVSKCDVVTINCPLHPETEGLFNKELLSKMKKGAYLVN 252
Query: 318 VARGGVIDEEALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKEAQ 377
ARG + D EA+ AL+SG +A A DV+ +P KD N +TPH+ +T +AQ
Sbjct: 253 TARGKICDREAVAEALESGHLAGYAGDVWFPQPAPKDHPWRTMPNNAMTPHISGTTLDAQ 312
Query: 378 EGVA 381
A
Sbjct: 313 ARYA 316
|
NAD-dependent formate dehydrogenase (FDH) catalyzes the NAD+-dependent oxidation of a formate anion to carbon dioxide coupled with the reduction of NAD+ to NADH. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxy acid dehydrogenase family have 2 highly similar subdomains of the alpha/beta form, with NAD binding occurring in the cleft between subdomains. NAD contacts are primarily to the Rossmann-fold NAD-binding domain which is inserted within the linear sequence of the more diverse flavodoxin-like catalytic subdomain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. FDHs of this family contain no metal ions or prosthetic groups. Catalysis occurs though direct transfer of the hydride ion to NAD+ without the stages of acid-base catalysis typically found in related dehydrogenases. FDHs are found in all methylotrophic microorganisms in energy production from C1 compounds such as methanol, and in the stress responses of plants. NAD-dependent FDH is useful in cofactor regeneration in asymmetrical biocatalytic reduction processes, where FDH irreversibly oxidizes formate to carbon dioxide, while reducing the oxidized form of the cofactor to the reduced form. Length = 348 |
| >gnl|CDD|215501 PLN02928, PLN02928, oxidoreductase family protein | Back alignment and domain information |
|---|
Score = 156 bits (396), Expect = 2e-42
Identities = 77/268 (28%), Positives = 138/268 (51%), Gaps = 20/268 (7%)
Query: 122 EALCEKISQCDALIVRSGTKVTRSVFEAANGKLKVVGRAGVGIDNVDLQAATEFGCLVVN 181
E + + I+ D + + ++ + A+ ++K++ + GVG++ VD+ AAT+ G V
Sbjct: 53 EDVPDVIANYDICVPKM-MRLDADIIARAS-QMKLIMQFGVGLEGVDVDAATKHGIKVAR 110
Query: 182 APIANT---VAAAEHGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGKTLAVMGFG 238
P T + AE I L+ + R ++ S+KA + + +G +L GKT+ ++G+G
Sbjct: 111 IPSEGTGNAASCAEMAIYLMLGLLRKQNEMQISLKARRL--GEPIGDTLFGKTVFILGYG 168
Query: 239 KVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQA-------------LATAD 285
+G E+A+R + G+ ++A ++ + + D AD
Sbjct: 169 AIGIELAKRLRPFGVKLLATRRSWTSEPEDGLLIPNGDVDDLVDEKGGHEDIYEFAGEAD 228
Query: 286 FISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDV 345
+ L L T+ I NDE + MKKG +VN+ARGG++D +A++ AL+SG + A+DV
Sbjct: 229 IVVLCCTLTKETAGIVNDEFLSSMKKGALLVNIARGGLLDYDAVLAALESGHLGGLAIDV 288
Query: 346 FTEEPPAKDSKLVQHENVTVTPHLGAST 373
EP D +++H NV +TPH+ T
Sbjct: 289 AWSEPFDPDDPILKHPNVIITPHVAGVT 316
|
Length = 347 |
| >gnl|CDD|181041 PRK07574, PRK07574, formate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 154 bits (391), Expect = 2e-41
Identities = 77/229 (33%), Positives = 128/229 (55%), Gaps = 4/229 (1%)
Query: 153 KLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASI 212
LK+ AG+G D+VDLQAA+E G V +N+++ AEH + ++ ++ RN +
Sbjct: 114 NLKLAITAGIGSDHVDLQAASEHGITVAEVTGSNSISVAEHVVMMILALVRNYEPSHRQA 173
Query: 213 KAGKWLRSKYVGVS--LVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPY-APADKARA 269
G W + V S L G T+ ++G G++G V RR K + + D + P + +
Sbjct: 174 VEGGWNIADCVSRSYDLEGMTVGIVGAGRIGLAVLRRLKPFDVKLHYTDRHRLPEEVEQE 233
Query: 270 VGVEL-VSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEA 328
+G+ VSFD ++ D +++H PL+P T +F+ + ++MK+G +VN ARG ++D +A
Sbjct: 234 LGLTYHVSFDSLVSVCDVVTIHCPLHPETEHLFDADVLSRMKRGSYLVNTARGKIVDRDA 293
Query: 329 LVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKEAQ 377
+VRAL+SG +A A DV+ +P D +TPH+ +T AQ
Sbjct: 294 VVRALESGHLAGYAGDVWFPQPAPADHPWRTMPRNGMTPHISGTTLSAQ 342
|
Length = 385 |
| >gnl|CDD|177941 PLN02306, PLN02306, hydroxypyruvate reductase | Back alignment and domain information |
|---|
Score = 148 bits (375), Expect = 2e-39
Identities = 111/324 (34%), Positives = 163/324 (50%), Gaps = 31/324 (9%)
Query: 129 SQCDALIVRSGTKVTRSVFEAANGKLKVVGRA----GVGIDNVDLQAATEFGCLVVNAPI 184
+CD +I + ++F A + K G+A VG +NVD++AA ++G V N P
Sbjct: 61 DKCDGVIGQLTEDWGETLFSALS---KAGGKAFSNMAVGYNNVDVEAANKYGIAVGNTPG 117
Query: 185 ANTVAAAEHGIALLASMARNVSQADASIKAGK---WLRSKYVGVSLVGKTLAVMGFGKVG 241
T AE +L + AR + +AD ++AG WL +VG L G+T+ V+G G++G
Sbjct: 118 VLTETTAELAASLSLAAARRIVEADEFMRAGLYEGWLPHLFVGNLLKGQTVGVIGAGRIG 177
Query: 242 SEVARR-AKGLGMNVIAHDPY----------APADKARAVGVELV------SFDQALATA 284
S AR +G MN+I +D Y A +A G + V S ++ L A
Sbjct: 178 SAYARMMVEGFKMNLIYYDLYQSTRLEKFVTAYGQFLKANGEQPVTWKRASSMEEVLREA 237
Query: 285 DFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALD 344
D ISLH L+ TT + N E A MKK +VN +RG VIDE ALV L + + + LD
Sbjct: 238 DVISLHPVLDKTTYHLINKERLALMKKEAVLVNASRGPVIDEVALVEHLKANPMFRVGLD 297
Query: 345 VFTEEPPAKDSKLVQHENVTVTPHLGASTKEAQEGVAIEIAEAVVGALRGELSATAIN-- 402
VF +EP K L +N V PH+ +++K +EG+A A V+G L+G N
Sbjct: 298 VFEDEPYMKPG-LADMKNAVVVPHIASASKWTREGMATLAALNVLGKLKGYPVWGDPNRV 356
Query: 403 APMV-PSEVLSELAPYVVLAKKLG 425
P + + +P +V AK LG
Sbjct: 357 EPFLNENAPPPAASPSIVNAKALG 380
|
Length = 386 |
| >gnl|CDD|240660 cd12184, HGDH_like, (R)-2-Hydroxyglutarate Dehydrogenase and related dehydrogenases, NAD-binding and catalytic domains | Back alignment and domain information |
|---|
Score = 146 bits (370), Expect = 5e-39
Identities = 94/287 (32%), Positives = 139/287 (48%), Gaps = 33/287 (11%)
Query: 117 YDLS--PEAL----CEKISQCDALIVRSGTKVTRSVFEAANGK-LKVVGRAGVGIDNVDL 169
YDL+ E L DA+IVR + E +K V VG +++DL
Sbjct: 25 YDLTLVEEYLNDENVHLAKGHDAVIVRGNCFADKENLEIYKEYGIKYVFTRTVGFNHIDL 84
Query: 170 QAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVS-----QADASIKAGKWLRSKYVG 224
+AA E G + P + A AE L +++R+ + A+ + K ++ SK +
Sbjct: 85 EAAKELGFKMARVPSYSPNAIAELAFTLAMTLSRHTAYTASRTANKNFKVDPFMFSKEIR 144
Query: 225 VSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATA 284
S VG ++G G++G A+ KGLG VI +D Y P+D A+ V V VS D+ L +
Sbjct: 145 NSTVG----IIGTGRIGLTAAKLFKGLGAKVIGYDIY-PSDAAKDV-VTFVSLDELLKKS 198
Query: 285 DFISLHMPLNP-TTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAAL 343
D ISLH+P K+ N E +KMK G ++N ARG + DEEA++ AL+SG +A
Sbjct: 199 DIISLHVPYIKGKNDKLINKEFISKMKDGAILINTARGELQDEEAILEALESGKLAGFGT 258
Query: 344 DVFTEE-------------PPAKDSKLVQ-HENVTVTPHLGASTKEA 376
DV E KL+ + V +TPH+G+ T EA
Sbjct: 259 DVLNNEKEIFFKDFDGDKIEDPVVEKLLDLYPRVLLTPHIGSYTDEA 305
|
(R)-2-hydroxyglutarate dehydrogenase (HGDH) catalyzes the NAD-dependent reduction of 2-oxoglutarate to (R)-2-hydroxyglutarate. HGDH is a member of the D-2-hydroxyacid NAD(+)-dependent dehydrogenase family; these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 330 |
| >gnl|CDD|240641 cd12164, GDH_like_2, Putative glycerate dehydrogenase and related proteins of the D-specific 2-hydroxy dehydrogenase family | Back alignment and domain information |
|---|
Score = 140 bits (356), Expect = 2e-37
Identities = 77/256 (30%), Positives = 115/256 (44%), Gaps = 30/256 (11%)
Query: 153 KLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAA------AEHGIALLASMA--RN 204
LK + G G+D++ + PI V AE+ L A + R+
Sbjct: 58 NLKAIFSLGAGVDHLLADPDLP------DVPIVRLVDPGLAQGMAEY--VLAAVLRLHRD 109
Query: 205 VSQADASIKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPA 264
+ + A + G W + + V+G G++G+ VARR LG V ++ +
Sbjct: 110 MDRYAAQQRRGVWKPLPQRPAAER--RVGVLGLGELGAAVARRLAALGFPVSG---WSRS 164
Query: 265 DKARAVGVELVS----FDQALATADF-ISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVA 319
K GV D LA D + L +PL P T I N E A++ +G ++NV
Sbjct: 165 PKDIE-GVTCFHGEEGLDAFLAQTDILVCL-LPLTPETRGILNAELLARLPRGAALINVG 222
Query: 320 RGGVIDEEALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKEAQEG 379
RG + E L+ ALDSG ++ A LDVF +EP D L +H VTVTPH+ A+ +
Sbjct: 223 RGPHLVEADLLAALDSGHLSGAVLDVFEQEPLPADHPLWRHPRVTVTPHI-AAITDPDSA 281
Query: 380 VAIEIAEAVVGALRGE 395
A +AE + GE
Sbjct: 282 AAQ-VAENIRRLEAGE 296
|
This group contains a variety of proteins variously identified as glycerate dehydrogenase (GDH, also known as hydroxypyruvate reductase) and other enzymes of the 2-hydroxyacid dehydrogenase family. GDH catalyzes the reversible reaction of (R)-glycerate + NAD+ to hydroxypyruvate + NADH + H+. 2-hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann-fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 306 |
| >gnl|CDD|240657 cd12180, 2-Hacid_dh_15, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains | Back alignment and domain information |
|---|
Score = 139 bits (351), Expect = 9e-37
Identities = 71/205 (34%), Positives = 109/205 (53%), Gaps = 10/205 (4%)
Query: 185 ANTVAAAEHGIALLASMARNVSQADASIK-AGKWLRSKYVGVSLVGKTLAVMGFGKVGSE 243
A AE +A + + A+ + + +K A +W R SL G TL ++GFG +G
Sbjct: 94 VAAEAIAEFVLAAILAAAKRL--PEIWVKGAEQWRREP--LGSLAGSTLGIVGFGAIGQA 149
Query: 244 VARRAKGLGMNVIA-HDPYAPADKARAVGVELVS-FDQALATADFISLHMPLNPTTSKIF 301
+ARRA LGM V+A P+D GVE + + A +D + L PL P T +
Sbjct: 150 LARRALALGMRVLALRRSGRPSD---VPGVEAAADLAELFARSDHLVLAAPLTPETRHLI 206
Query: 302 NDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHE 361
N + A+ K G+ ++N+ARGG++D+EAL+ ALDSG ++ A+LDV EP + L H
Sbjct: 207 NADVLAQAKPGLHLINIARGGLVDQEALLEALDSGRISLASLDVTDPEPLPEGHPLYTHP 266
Query: 362 NVTVTPHLGASTKEAQEGVAIEIAE 386
V ++PH A + + +A E
Sbjct: 267 RVRLSPHTSAIAPDGRRNLADRFLE 291
|
2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 308 |
| >gnl|CDD|166874 PRK00257, PRK00257, erythronate-4-phosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 134 bits (338), Expect = 2e-34
Identities = 87/304 (28%), Positives = 137/304 (45%), Gaps = 39/304 (12%)
Query: 118 DLSPEALCEKISQCDALIVRSGTKVTRSVFEAANGKLKVVGRAGVGIDNVDLQAATEFGC 177
A + D L+VRS T+V R++ E + +++ VG +G D++DL E G
Sbjct: 29 AFDRAA----VRDADVLLVRSVTRVDRALLEGS--RVRFVGTCTIGTDHLDLDYFAEAGI 82
Query: 178 LVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGKTLAVMGF 237
+AP N ++ + L ++A GV L +T V+G
Sbjct: 83 TWSSAPGCNARGVVDYVLGSLLTLAE--------------RE----GVDLAERTYGVVGA 124
Query: 238 GKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPT- 296
G VG + R +GLG V+ DP P +A G + VS ++ L D ISLH PL
Sbjct: 125 GHVGGRLVRVLRGLGWKVLVCDP--PRQEAEGDG-DFVSLERILEECDVISLHTPLTKEG 181
Query: 297 ---TSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEEPPAK 353
T + ++ A ++ G ++N +RG V+D +AL AL SG A LDV+ EP
Sbjct: 182 EHPTRHLLDEAFLASLRPGAWLINASRGAVVDNQALREALLSGEDLDAVLDVWEGEPQI- 240
Query: 354 DSKLVQHENVTV-TPHL-GASTKEAQEGVAIEIAEAVVGALRGELSATAINAPMVPSEVL 411
D +L T+ TPH+ G S G A +I +A+ + A ++P L
Sbjct: 241 DLELADL--CTIATPHIAGYSLDGKARGTA-QIYQALCRFFG--IPARVSLTDLLPPPWL 295
Query: 412 SELA 415
+++
Sbjct: 296 AQID 299
|
Length = 381 |
| >gnl|CDD|178684 PLN03139, PLN03139, formate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 128 bits (322), Expect = 4e-32
Identities = 72/228 (31%), Positives = 113/228 (49%), Gaps = 4/228 (1%)
Query: 154 LKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIK 213
L+++ AG+G D++DL AA G V +N V+ AE + + + RN +
Sbjct: 122 LELLLTAGIGSDHIDLPAAAAAGLTVAEVTGSNVVSVAEDELMRILILLRNFLPGYHQVV 181
Query: 214 AGKWLRSK--YVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA-PADKARAV 270
+G+W + Y L GKT+ +G G++G + +R K N++ HD + +
Sbjct: 182 SGEWNVAGIAYRAYDLEGKTVGTVGAGRIGRLLLQRLKPFNCNLLYHDRLKMDPELEKET 241
Query: 271 GVELVS-FDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEAL 329
G + D L D + ++ PL T +FN E AKMKKGV IVN ARG ++D +A+
Sbjct: 242 GAKFEEDLDAMLPKCDVVVINTPLTEKTRGMFNKERIAKMKKGVLIVNNARGAIMDTQAV 301
Query: 330 VRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKEAQ 377
A SG + DV+ +P KD N +TPH+ +T +AQ
Sbjct: 302 ADACSSGHIGGYGGDVWYPQPAPKDHPWRYMPNHAMTPHISGTTIDAQ 349
|
Length = 386 |
| >gnl|CDD|181499 PRK08605, PRK08605, D-lactate dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 123 bits (311), Expect = 4e-31
Identities = 77/268 (28%), Positives = 137/268 (51%), Gaps = 24/268 (8%)
Query: 154 LKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIK 213
+K + + G D DL+ AT++ ++ N P + + AE + ++ R+ +Q ++
Sbjct: 70 IKQIAQRSAGFDTYDLELATKYNLIISNVPSYSPESIAEFTVTQAINLVRHFNQIQTKVR 129
Query: 214 AG--KW---LRSKYVGVSLVGKTLAVMGFGKVGSEVAR-RAKGLGMNVIAHDPYAPADKA 267
+W + S+ S+ +AV+G G++G VA+ AKG G +V+A+DP+ P KA
Sbjct: 130 EHDFRWEPPILSR----SIKDLKVAVIGTGRIGLAVAKIFAKGYGSDVVAYDPF-PNAKA 184
Query: 268 RAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEE 327
+ ++A+ AD ++LHMP +FN + F KKG VN ARG ++D +
Sbjct: 185 ATYVDYKDTIEEAVEGADIVTLHMPATKYNHYLFNADLFKHFKKGAVFVNCARGSLVDTK 244
Query: 328 ALVRALDSGVVAQAALDVFTEEPP--AKDSK-----------LVQHENVTVTPHLGASTK 374
AL+ ALD+G++ AALD + E P D + L+ E+V +TPH+ T
Sbjct: 245 ALLDALDNGLIKGAALDTYEFERPLFPSDQRGQTINDPLLESLINREDVILTPHIAFYTD 304
Query: 375 EAQEGVAIEIAEAVVGALRGELSATAIN 402
A + + ++ +A + L+ + +N
Sbjct: 305 AAVKNLIVDALDATLEVLQTGTTRLRVN 332
|
Length = 332 |
| >gnl|CDD|240636 cd12159, 2-Hacid_dh_2, Putative D-isomer specific 2-hydroxyacid dehydrogenases | Back alignment and domain information |
|---|
Score = 120 bits (304), Expect = 2e-30
Identities = 72/216 (33%), Positives = 99/216 (45%), Gaps = 13/216 (6%)
Query: 185 ANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSKYVGVSLV----GKTLAVMGFGKV 240
A TVA EH +ALL + R + A +A W LV G T+A++G G +
Sbjct: 84 AETVA--EHALALLLAGLRQLP---ARARATTW--DPAEEDDLVTLLRGSTVAIVGAGGI 136
Query: 241 GSEVARRAKGLGMNVIAHDPYA-PADKARAVGVELVSFDQALATADFISLHMPLNPTTSK 299
G + G VIA + P + A V D+ AD + L PL P T
Sbjct: 137 GRALIPLLAPFGAKVIAVNRSGRPVEGADET-VPADRLDEVWPDADHVVLAAPLTPETRH 195
Query: 300 IFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEEPPAKDSKLVQ 359
+ + A MK +VNVARG ++D +ALV AL SG +A AALDV EP L
Sbjct: 196 LVDAAALAAMKPHAWLVNVARGPLVDTDALVDALRSGEIAGAALDVTDPEPLPDGHPLWS 255
Query: 360 HENVTVTPHLGASTKEAQEGVAIEIAEAVVGALRGE 395
N +TPH+ + + + +A +AE V GE
Sbjct: 256 LPNALITPHVANTPEVIRPLLAERVAENVRAFAAGE 291
|
2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 303 |
| >gnl|CDD|240643 cd12166, 2-Hacid_dh_7, Putative D-isomer specific 2-hydroxyacid dehydrogenases | Back alignment and domain information |
|---|
Score = 120 bits (302), Expect = 5e-30
Identities = 78/289 (26%), Positives = 125/289 (43%), Gaps = 22/289 (7%)
Query: 92 TILVSEKLGEAGLAILRSFGNVEC-LYDLSPEALCEKISQCDALIVR--SGTKVTRSVFE 148
T+LV + A L L VE ++D + + + ++ + V ++
Sbjct: 1 TVLVPDPELVAALGPLPP--GVEVVVWDGE-GPPPDAAADVEFVVPPYMAAPPVLEALRA 57
Query: 149 AANGKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQA 208
L+VV G D V G + NA + + AE +AL+ + R + +
Sbjct: 58 LPR--LRVVQTLSAGYDGVLPLLPE--GVTLCNARGVHDASTAELAVALILASLRGLPRF 113
Query: 209 DASIKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKAR 268
+ G+W SL + + ++G+G +G + RR + V A AR
Sbjct: 114 VRAQARGRWEPR--RTPSLADRRVLIVGYGSIGRAIERRLAPFEVRVTR-----VARTAR 166
Query: 269 AVGVELVSFDQA---LATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVID 325
G ++ D+ L AD + L +PL T + + E A+M G +VNVARG V+D
Sbjct: 167 P-GEQVHGIDELPALLPEADVVVLIVPLTDETRGLVDAEFLARMPDGALLVNVARGPVVD 225
Query: 326 EEALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTK 374
+ALV L SG + +AALDV EP L V +TPH+G +T
Sbjct: 226 TDALVAELASGRL-RAALDVTDPEPLPPGHPLWSAPGVLITPHVGGATP 273
|
2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 300 |
| >gnl|CDD|235800 PRK06436, PRK06436, glycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 113 bits (284), Expect = 9e-28
Identities = 62/233 (26%), Positives = 115/233 (49%), Gaps = 9/233 (3%)
Query: 153 KLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASI 212
K K++ G+D++D+ E L NA A +++ AEH ALL + A+N+ + + ++
Sbjct: 49 KTKMIQSLSAGVDHIDVSGIPENVVLCSNAG-AYSISVAEHAFALLLAWAKNICENNYNM 107
Query: 213 KAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGV 272
K G + +S L K+L ++G+G +G VA AK GMN+ A Y + +
Sbjct: 108 KNGNFKQSPTK--LLYNKSLGILGYGGIGRRVALLAKAFGMNIYA---YTRSYVNDGISS 162
Query: 273 ELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRA 332
+ + + +DF+ + +PL T + N + + +KG+ I+NVAR V+D+ ++
Sbjct: 163 IYMEPEDIMKKSDFVLISLPLTDETRGMINSKMLSLFRKGLAIINVARADVVDKNDMLNF 222
Query: 333 LDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKEAQEGVAIEIA 385
L + DV+ EP ++ +NV ++PH+ A+ +A
Sbjct: 223 LRNHNDKYYLSDVWWNEPIITETNP---DNVILSPHVAGGMSGEIMQPAVALA 272
|
Length = 303 |
| >gnl|CDD|183550 PRK12480, PRK12480, D-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 113 bits (285), Expect = 1e-27
Identities = 65/238 (27%), Positives = 117/238 (49%), Gaps = 18/238 (7%)
Query: 154 LKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIK 213
+K + + G D DL A + ++ N P + AE+ +++ + R + ++
Sbjct: 70 IKQIAQRTAGFDMYDLDLAKKHNIVISNVPSYSPETIAEYSVSIALQLVRRFPDIERRVQ 129
Query: 214 AG--KWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVG 271
A W +++ + + T+A++G G++G+ A+ G G + A+D Y P +
Sbjct: 130 AHDFTW-QAEIMSKPVKNMTVAIIGTGRIGAATAKIYAGFGATITAYDAY-PNKDLDFLT 187
Query: 272 VELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVR 331
+ S +A+ AD ISLH+P N + +F+ F +KKG +VN ARG VI+ L+
Sbjct: 188 YK-DSVKEAIKDADIISLHVPANKESYHLFDKAMFDHVKKGAILVNAARGAVINTPDLIA 246
Query: 332 ALDSGVVAQAALDVFTEEPP-------AKD------SKLVQHENVTVTPHLGASTKEA 376
A++ G + AA+D + E KD +L++HE + VTPH+ + EA
Sbjct: 247 AVNDGTLLGAAIDTYENEAAYFTNDWTNKDIDDKTLLELIEHERILVTPHIAFFSDEA 304
|
Length = 330 |
| >gnl|CDD|240640 cd12163, 2-Hacid_dh_5, Putative D-isomer specific 2-hydroxyacid dehydrogenases | Back alignment and domain information |
|---|
Score = 108 bits (272), Expect = 8e-26
Identities = 65/246 (26%), Positives = 100/246 (40%), Gaps = 51/246 (20%)
Query: 178 LVVNAPIANTVAAAEHGIAL--------LASMARNVSQADASIKAGKWLRSKYV--GVSL 227
L + + A+ HG + L + + K W R +
Sbjct: 73 LYKDPEVPLCTASGIHGPQIAEWVIGTWLVLSHHFLQYIELQ-KEQTWGRRQEAYSVEDS 131
Query: 228 VGKTLAVMGFGKVGSEVARRAKGLGMNVIAH----------------------DP----- 260
VGK + ++G+G +G + AR A+ LGM V A+ DP
Sbjct: 132 VGKRVGILGYGSIGRQTARLAQALGMEVYAYTRSPRPTPESRKDDGYIVPGTGDPDGSIP 191
Query: 261 ---YAPADKARAVGVELVSFDQALATA-DFISLHMPLNPTTSKIFNDETFAKM-KKGVRI 315
++ DKA S + L D + + +PL P T + E F + K+ +
Sbjct: 192 SAWFSGTDKA--------SLHEFLRQDLDLLVVSLPLTPATKHLLGAEEFEILAKRKTFV 243
Query: 316 VNVARGGVIDEEALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKE 375
N+ARG ++D +ALV AL+SG + AALDV EP D L NV +TPH+ T+E
Sbjct: 244 SNIARGSLVDTDALVAALESGQIRGAALDVTDPEPLPADHPLWSAPNVIITPHVSWQTQE 303
Query: 376 AQEGVA 381
+
Sbjct: 304 YFDRAL 309
|
2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 334 |
| >gnl|CDD|240637 cd12160, 2-Hacid_dh_3, Putative D-isomer specific 2-hydroxyacid dehydrogenases | Back alignment and domain information |
|---|
Score = 104 bits (261), Expect = 1e-24
Identities = 65/214 (30%), Positives = 102/214 (47%), Gaps = 17/214 (7%)
Query: 191 AEHGIALLASMARNVSQADASIKAGKW---------LRSKYVGVSLVGKTLAVMGFGKVG 241
AEH +AL+ + R + + + + +W LR +L+G + + GFG +G
Sbjct: 96 AEHTLALILAAVRRLDEMREAQREHRWAGELGGLQPLRPAGRLTTLLGARVLIWGFGSIG 155
Query: 242 SEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQ---ALATADFISLHMPLNPTTS 298
+A LG V A + RA G +V+ D+ L D + + +P P+T+
Sbjct: 156 QRLAPLLTALGARVT---GVARSAGERA-GFPVVAEDELPELLPETDVLVMILPATPSTA 211
Query: 299 KIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEEPPAKDSKLV 358
+ E A + K +VNV RG +DE+ALV AL+SG + AALDV EP S L
Sbjct: 212 HALDAEVLAALPKHAWVVNVGRGATVDEDALVAALESGRLGGAALDVTATEPLPASSPLW 271
Query: 359 QHENVTVTPHL-GASTKEAQEGVAIEIAEAVVGA 391
N+ +TPH G + A+E +A + + G
Sbjct: 272 DAPNLILTPHAAGGRPQGAEELIAENLRAFLAGG 305
|
2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 310 |
| >gnl|CDD|240631 cd12154, FDH_GDH_like, Formate/glycerate dehydrogenases, D-specific 2-hydroxy acid dehydrogenases and related dehydrogenases | Back alignment and domain information |
|---|
Score = 93.4 bits (232), Expect = 7e-21
Identities = 59/264 (22%), Positives = 88/264 (33%), Gaps = 28/264 (10%)
Query: 127 KISQCDALIVRSGTKVTRSVFEAANGKLKVVGRAGVGIDNVDL-QAATEFGCLVVNAP-- 183
+ D ++ +++ +G D+ DL +A G +
Sbjct: 61 ALWSLDVVLKVKEPLTNAEYALIQKLGDRLLFTYTIGADHRDLTEALARAGLTAIAVEGV 120
Query: 184 -----IANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGKTLAVMGFG 238
+N++ A E + +A + GKT+ V+G G
Sbjct: 121 ELPLLTSNSIGAGELSVQFIARFLEVQQPGRLGGAPD-----------VAGKTVVVVGAG 169
Query: 239 KVGSEVARRAKGLGMNVIAHD--PYAPADKARAVGVELVSFDQALATADFISLHMPLNPT 296
VG E A+ +GLG V+ D A G + ++ALA AD I L
Sbjct: 170 VVGKEAAQMLRGLGAQVLITDINVEALEQLEELGGKNVEELEEALAEADVIVTTTLLPGK 229
Query: 297 TSKIFNDET-FAKMKKGVRIVNVARGGVIDEEALVR-ALDSGVVAQAALDVFTEEPPAKD 354
+ I E +MK G IVNVA G V +AL L+ G DV P
Sbjct: 230 RAGILVPEELVEQMKPGSVIVNVAVGAVGCVQALHTQLLEEGHGVVHYGDVNMPGPGC-- 287
Query: 355 SKLVQHENVTVTPHLGASTKEAQE 378
T L A+T A
Sbjct: 288 ---AMGVPWDATLRLAANTLPALV 308
|
The formate/glycerate dehydrogenase like family contains a diverse group of enzymes such as formate dehydrogenase (FDH), glycerate dehydrogenase (GDH), D-lactate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine hydrolase, that share a common 2-domain structure. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar domains of the alpha/beta Rossmann fold NAD+ binding form. The NAD(P) binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD(P) is bound, primarily to the C-terminal portion of the 2nd (internal) domain. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. 2-hydroxyacid dehydrogenases are enzymes that catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate dehydrogenase (FDH) catalyzes the NAD+-dependent oxidation of formate ion to carbon dioxide with the concomitant reduction of NAD+ to NADH. FDHs of this family contain no metal ions or prosthetic groups. Catalysis occurs though direct transfer of a hydride ion to NAD+ without the stages of acid-base catalysis typically found in related dehydrogenases. Length = 310 |
| >gnl|CDD|185335 PRK15438, PRK15438, erythronate-4-phosphate dehydrogenase PdxB; Provisional | Back alignment and domain information |
|---|
Score = 89.6 bits (222), Expect = 3e-19
Identities = 76/267 (28%), Positives = 118/267 (44%), Gaps = 31/267 (11%)
Query: 126 EKISQCDALIVRSGTKVTRSVFEAANGKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIA 185
+++ DAL+VRS TKV S+ A +K VG A G D+VD + G AP
Sbjct: 33 AQLADADALMVRSVTKVNESLL--AGKPIKFVGTATAGTDHVDEAWLKQAGIGFSAAPGC 90
Query: 186 NTVAAAEHGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVA 245
N +A E+ + L +A + D G SL +T+ ++G G VG +
Sbjct: 91 NAIAVVEYVFSSLLMLA----ERD--------------GFSLHDRTVGIVGVGNVGRRLQ 132
Query: 246 RRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPL---NPTTSKIFN 302
R + LG+ + DP R + S D+ + AD ++ H PL P +
Sbjct: 133 ARLEALGIKTLLCDP---PRADRGDEGDFRSLDELVQEADILTFHTPLFKDGPYKTLHLA 189
Query: 303 DETF-AKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHE 361
DE +K G ++N RG V+D AL+ L+ G LDV+ EP + + +
Sbjct: 190 DEKLIRSLKPGAILINACRGAVVDNTALLTCLNEGQKLSVVLDVWEGEP---ELNVELLK 246
Query: 362 NVTV-TPHLGASTKEAQEGVAIEIAEA 387
V + TPH+ T E + ++ EA
Sbjct: 247 KVDIGTPHIAGYTLEGKARGTTQVFEA 273
|
Length = 378 |
| >gnl|CDD|153174 cd04902, ACT_3PGDH-xct, C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH) | Back alignment and domain information |
|---|
Score = 81.0 bits (201), Expect = 6e-19
Identities = 24/62 (38%), Positives = 37/62 (59%)
Query: 560 LILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDEEPNQDSLKEIG 619
+++ R D+PG+IGKVG ILGE +N+ M VGR +M + VDE + L+E+
Sbjct: 1 MLVVRNTDRPGVIGKVGTILGEAGINIAGMQVGRDEPGGEALMVLSVDEPVPDEVLEELR 60
Query: 620 KV 621
+
Sbjct: 61 AL 62
|
The C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with an extended C-terminal (xct) region from bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. Some 3PGDH enzymes have an additional domain formed by an extended C-terminal region. This additional domain introduces significant asymmetry to the homotetramer. Adjacent ACT (regulatory) domains interact, creating two serine-binding sites, however, this asymmetric arrangement results in the formation of two different and distinct domain interfaces between identical domains in the asymmetric unit. How this asymmetry influences the mechanism of effector inhibition is still unknown. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 73 |
| >gnl|CDD|153151 cd04879, ACT_3PGDH-like, ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH) | Back alignment and domain information |
|---|
Score = 74.8 bits (185), Expect = 8e-17
Identities = 24/62 (38%), Positives = 35/62 (56%)
Query: 560 LILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDEEPNQDSLKEIG 619
+L D PG+IGKVG ILGEH +N+ M VGR + M + VD ++ L+E+
Sbjct: 1 RLLIVHKDVPGVIGKVGTILGEHGINIAAMQVGRKEKGGIAYMVLDVDSPVPEEVLEELK 60
Query: 620 KV 621
+
Sbjct: 61 AL 62
|
ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active site is postulated to involve the tethering of the regulatory domains together to create a rigid quaternary structure with a solvent-exposed active site cleft. This CD also includes the C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillus, and Treponema species. LSD enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in E. coli, and other Enterobacteriales, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 71 |
| >gnl|CDD|185366 PRK15469, ghrA, bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional | Back alignment and domain information |
|---|
Score = 79.8 bits (197), Expect = 2e-16
Identities = 57/169 (33%), Positives = 89/169 (52%), Gaps = 10/169 (5%)
Query: 231 TLAVMGFGKVGSEVARRAKGLGMNVIAHD---PYAPADKARAVGVELVSFDQALATADFI 287
T+ ++G G +GS+VA+ + G + P ++ A EL +F T I
Sbjct: 138 TIGILGAGVLGSKVAQSLQTWGFPLRCWSRSRKSWPGVQSFAGREELSAFLSQ--TRVLI 195
Query: 288 SLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFT 347
+L +P P T I N + ++ G ++N+ARG + E+ L+ ALDSG V A LDVF+
Sbjct: 196 NL-LPNTPETVGIINQQLLEQLPDGAYLLNLARGVHVVEDDLLAALDSGKVKGAMLDVFS 254
Query: 348 EEPPAKDSKLVQHENVTVTPHLGASTKEAQEGVAIE-IAEAVVGALRGE 395
EP +S L QH V +TPH+ A T+ A+ A+E I+ + +GE
Sbjct: 255 REPLPPESPLWQHPRVAITPHVAAVTRPAE---AVEYISRTIAQLEKGE 300
|
Length = 312 |
| >gnl|CDD|153175 cd04903, ACT_LSD, C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit | Back alignment and domain information |
|---|
Score = 59.5 bits (145), Expect = 2e-11
Identities = 23/64 (35%), Positives = 39/64 (60%), Gaps = 3/64 (4%)
Query: 567 DQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDEEPNQDSLKEIGK---VHF 623
D+PG I KV ++L +H +N+ FM V R + + +M I VD+ +++ ++EI K +H
Sbjct: 8 DKPGAIAKVTSVLADHEINIAFMRVSRKEKGDQALMVIEVDQPIDEEVIEEIKKIPNIHQ 67
Query: 624 VARI 627
V I
Sbjct: 68 VILI 71
|
The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 71 |
| >gnl|CDD|198065 smart00997, AdoHcyase_NAD, S-adenosyl-L-homocysteine hydrolase, NAD binding domain | Back alignment and domain information |
|---|
Score = 55.1 bits (134), Expect = 5e-09
Identities = 33/103 (32%), Positives = 46/103 (44%), Gaps = 19/103 (18%)
Query: 224 GVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAV-----GVELVSFD 278
V L GK + V G+G VG VA R +GLG VI + D RA+ G E++ +
Sbjct: 18 NVLLAGKNVVVAGYGDVGKGVAARLRGLGARVIVTE----IDPIRALEAAMDGFEVMKME 73
Query: 279 QALATAD-FISLHMPLNPTT--SKIFNDETFAKMKKGVRIVNV 318
+A AD F++ T + E F MK G + N
Sbjct: 74 EAAKRADIFVT-------ATGNKDVITREHFRAMKDGAILANA 109
|
Length = 162 |
| >gnl|CDD|240647 cd12170, 2-Hacid_dh_9, Putative D-isomer specific 2-hydroxyacid dehydrogenases | Back alignment and domain information |
|---|
Score = 54.2 bits (131), Expect = 6e-08
Identities = 67/290 (23%), Positives = 107/290 (36%), Gaps = 29/290 (10%)
Query: 98 KLGEAGLAILRSFGNVECLYDLSP---EALCEKISQCDALIVRSGTKVTRSVFEAANGKL 154
L E L+ + YD P E + E+I D ++V T++ V EA +
Sbjct: 11 GLNEEAEEELKKYAEEVVFYDDIPESDEEIIERIGDADCVLVSYTTQIDEEVLEACP-NI 69
Query: 155 KVVGRAGVGID----NVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADA 210
K +G NVD+ AA E G V E+ I+ L +
Sbjct: 70 KYIGMCCSLYSEESANVDIAAARENGITVTGIRDYGDEGVVEYVISELIRLLHGFGGK-- 127
Query: 211 SIKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADK--AR 268
+W K L G + ++G G G +A G +V Y+ K A
Sbjct: 128 -----QW---KEEPRELTGLKVGIIGLGTTGQMIADALSFFGADVYY---YSRTRKPDAE 176
Query: 269 AVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEA 328
A G+ + ++ L T D I +P N + +E F + G + N + G + EA
Sbjct: 177 AKGIRYLPLNELLKTVDVICTCLPKN---VILLGEEEFELLGDGKILFNTSLGPSFEVEA 233
Query: 329 LVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKEAQE 378
L + L + D D +L+++ NV T T++A E
Sbjct: 234 LKKWLKASGYNIFDCD---TAGALGDEELLRYPNVICTNKSAGWTRQAFE 280
|
2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 294 |
| >gnl|CDD|235488 PRK05476, PRK05476, S-adenosyl-L-homocysteine hydrolase; Provisional | Back alignment and domain information |
|---|
Score = 50.9 bits (123), Expect = 1e-06
Identities = 29/97 (29%), Positives = 44/97 (45%), Gaps = 14/97 (14%)
Query: 225 VSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAH--DPYAPADKARAVGVELVSFDQALA 282
V + GK + V G+G VG A+R +GLG VI DP A +A G +++ ++A
Sbjct: 208 VLIAGKVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPIC-ALQAAMDGFRVMTMEEAAE 266
Query: 283 TAD-FISLHMPLNPTTS--KIFNDETFAKMKKGVRIV 316
D F++ T + E MK G I+
Sbjct: 267 LGDIFVT-------ATGNKDVITAEHMEAMKDGA-IL 295
|
Length = 425 |
| >gnl|CDD|223573 COG0499, SAM1, S-adenosylhomocysteine hydrolase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 50.3 bits (121), Expect = 2e-06
Identities = 32/99 (32%), Positives = 47/99 (47%), Gaps = 15/99 (15%)
Query: 225 VSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAH--DPYAPADKARAVGVELVSFDQALA 282
V L GK + V G+G VG +A R +G+G VI DP A +A G +++ ++A
Sbjct: 205 VLLAGKNVVVAGYGWVGRGIAMRLRGMGARVIVTEVDP-IRALEAAMDGFRVMTMEEAAK 263
Query: 283 TAD-FISLHMPLNPTTS---KIFNDETFAKMKKGVRIVN 317
T D F+ T + + E F KMK G + N
Sbjct: 264 TGDIFV--------TATGNKDVIRKEHFEKMKDGAILAN 294
|
Length = 420 |
| >gnl|CDD|153139 cd02116, ACT, ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme | Back alignment and domain information |
|---|
Score = 43.0 bits (102), Expect = 1e-05
Identities = 13/51 (25%), Positives = 26/51 (50%)
Query: 567 DQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDEEPNQDSLKE 617
D+PG++ KV ++L E +N+ + + + I VD + + + L E
Sbjct: 7 DRPGLLAKVLSVLAEAGINITSIEQRTSGDGGEADIFIVVDGDGDLEKLLE 57
|
Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-prephenate dehydratase enzyme (P-protein), respectively. Aspartokinases typically consist of two C-terminal ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. ACT domain repeats have been shown to have nonequivalent ligand-binding sites with complex regulatory patterns such as those seen in the bifunctional enzyme, aspartokinase-homoserine dehydrogenase (ThrA). In other enzymes, such as phenylalanine hydroxylases, the ACT domain appears to function as a flexible small module providing allosteric regulation via transmission of conformational changes, these conformational changes are not necessarily initiated by regulatory ligand binding at the ACT domain itself. ACT domains are present either singularly, N- or C-terminal, or in pairs present C-terminal or between two catalytic domains. Unique to cyanobacteria are four ACT domains C-terminal to an aspartokinase domain. A few proteins are composed almost entirely of ACT domain repeats as seen in the four ACT domain protein, the ACR protein, found in higher plants; and the two ACT domain protein, the glycine cleavage system transcriptional repressor (GcvR) protein, found in some bacteria. Also seen are single ACT domain proteins similar to the Streptococcus pneumoniae ACT domain protein (uncharacterized pdb structure 1ZPV) found in both bacteria and archaea. Purportedly, the ACT domain is an evolutionarily mobile ligand binding regulatory module that has been fused to different enzymes at various times. Length = 60 |
| >gnl|CDD|240619 cd00401, SAHH, S-Adenosylhomocysteine Hydrolase, NAD-binding and catalytic domains | Back alignment and domain information |
|---|
Score = 47.5 bits (114), Expect = 1e-05
Identities = 33/98 (33%), Positives = 46/98 (46%), Gaps = 13/98 (13%)
Query: 225 VSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAH--DPYAPADKARAVGVELVSFDQALA 282
V + GK + V G+G VG A RA+GLG VI DP A +A G E++ ++A
Sbjct: 191 VLIAGKVVVVAGYGWVGKGCAMRARGLGARVIVTEVDPIC-ALQAAMDGFEVMPMEEAAK 249
Query: 283 TAD-FISLHMPLNPTT--SKIFNDETFAKMKKGVRIVN 317
D F++ T + E F KMK G + N
Sbjct: 250 IGDIFVT-------ATGNKDVIRGEHFEKMKDGAILCN 280
|
S-adenosyl-L-homocysteine hydrolase (SAHH, AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homotetramers, with each monomer binding one molecule of NAD+. Length = 402 |
| >gnl|CDD|213572 TIGR00936, ahcY, adenosylhomocysteinase | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 2e-05
Identities = 35/109 (32%), Positives = 52/109 (47%), Gaps = 14/109 (12%)
Query: 227 LVGKTLAVMGFGKVGSEVARRAKGLGMNVIAH--DPYAPADKARAVGVELVSFDQALATA 284
+ GKT+ V G+G G +A RA+G+G VI DP A +A G +++ ++A
Sbjct: 194 IAGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDP-IRALEAAMDGFRVMTMEEAAKIG 252
Query: 285 D-FISLHMPLNPTTS--KIFNDETFAKMKKGVRIVNVARGGV-IDEEAL 329
D FI+ T + E F MK G + N+ V ID +AL
Sbjct: 253 DIFIT-------ATGNKDVIRGEHFENMKDGAIVANIGHFDVEIDVKAL 294
|
This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704) [Energy metabolism, Amino acids and amines]. Length = 407 |
| >gnl|CDD|190133 pfam01842, ACT, ACT domain | Back alignment and domain information |
|---|
Score = 39.7 bits (93), Expect = 2e-04
Identities = 13/64 (20%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Query: 561 ILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGI-MAIGVDEEPNQDSLKEIG 619
+ D+PG++ +V L + +N+ +S + + + + + VDEE + +L+ +
Sbjct: 3 LEVGVPDRPGLLAEVFGALADRGINIESISQSTSGDKAGIVFIVVVVDEEDLEAALEALK 62
Query: 620 KVHF 623
K+
Sbjct: 63 KLLG 66
|
This family of domains generally have a regulatory role. ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. The ACT domain is found in: D-3-phosphoglycerate dehydrogenase EC:1.1.1.95, which is inhibited by serine. Aspartokinase EC:2.7.2.4, which is regulated by lysine. Acetolactate synthase small regulatory subunit, which is inhibited by valine. Phenylalanine-4-hydroxylase EC:1.14.16.1, which is regulated by phenylalanine. Prephenate dehydrogenase EC:4.2.1.51. formyltetrahydrofolate deformylase EC:3.5.1.10, which is activated by methionine and inhibited by glycine. GTP pyrophosphokinase EC:2.7.6.5. Length = 66 |
| >gnl|CDD|133450 cd05211, NAD_bind_Glu_Leu_Phe_Val, NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase | Back alignment and domain information |
|---|
Score = 39.8 bits (93), Expect = 0.002
Identities = 35/130 (26%), Positives = 54/130 (41%), Gaps = 11/130 (8%)
Query: 221 KYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIA-HDPYAPADKARAVGVELVSFDQ 279
K++G SL G T+AV G G VG +A++ G V+A DP EL+++
Sbjct: 15 KHLGDSLEGLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDGYIYDPGITTEELINYAV 74
Query: 280 ALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVA 339
AL + + + + A G VID E + L + VVA
Sbjct: 75 ALGGSA-------RVKVQDYFPGEAIL-GLDVDI-FAPCALGNVIDLEN-AKKLKAKVVA 124
Query: 340 QAALDVFTEE 349
+ A + T+E
Sbjct: 125 EGANNPTTDE 134
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parrallel to the others. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an alpha-beta-alpha configuration. NAD binding involves numerous hydrogen and van der Waals contacts. Length = 217 |
| >gnl|CDD|133445 cd01076, NAD_bind_1_Glu_DH, NAD(P) binding domain of glutamate dehydrogenase, subgroup 1 | Back alignment and domain information |
|---|
Score = 39.8 bits (94), Expect = 0.002
Identities = 16/37 (43%), Positives = 21/37 (56%)
Query: 221 KYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIA 257
K +G+ L G +A+ GFG VGS AR G V+A
Sbjct: 23 KKLGIGLAGARVAIQGFGNVGSHAARFLHEAGAKVVA 59
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an alpha -beta-alpha configuration. NAD binding involves numerous hydrogen and van der Waals contacts. Length = 227 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 628 | |||
| TIGR01327 | 525 | PGDH D-3-phosphoglycerate dehydrogenase. This mode | 100.0 | |
| PRK13581 | 526 | D-3-phosphoglycerate dehydrogenase; Provisional | 100.0 | |
| KOG0068 | 406 | consensus D-3-phosphoglycerate dehydrogenase, D-is | 100.0 | |
| PRK11790 | 409 | D-3-phosphoglycerate dehydrogenase; Provisional | 100.0 | |
| COG0111 | 324 | SerA Phosphoglycerate dehydrogenase and related de | 100.0 | |
| PRK15409 | 323 | bifunctional glyoxylate/hydroxypyruvate reductase | 100.0 | |
| COG1052 | 324 | LdhA Lactate dehydrogenase and related dehydrogena | 100.0 | |
| PRK08410 | 311 | 2-hydroxyacid dehydrogenase; Provisional | 100.0 | |
| PRK13243 | 333 | glyoxylate reductase; Reviewed | 100.0 | |
| PRK06487 | 317 | glycerate dehydrogenase; Provisional | 100.0 | |
| PLN02306 | 386 | hydroxypyruvate reductase | 100.0 | |
| PRK06932 | 314 | glycerate dehydrogenase; Provisional | 100.0 | |
| PLN02928 | 347 | oxidoreductase family protein | 100.0 | |
| PLN03139 | 386 | formate dehydrogenase; Provisional | 100.0 | |
| PRK07574 | 385 | formate dehydrogenase; Provisional | 100.0 | |
| PRK08605 | 332 | D-lactate dehydrogenase; Validated | 100.0 | |
| PRK12480 | 330 | D-lactate dehydrogenase; Provisional | 100.0 | |
| PRK15438 | 378 | erythronate-4-phosphate dehydrogenase PdxB; Provis | 100.0 | |
| KOG0069 | 336 | consensus Glyoxylate/hydroxypyruvate reductase (D- | 100.0 | |
| PRK00257 | 381 | erythronate-4-phosphate dehydrogenase; Validated | 100.0 | |
| PRK15469 | 312 | ghrA bifunctional glyoxylate/hydroxypyruvate reduc | 100.0 | |
| PRK06436 | 303 | glycerate dehydrogenase; Provisional | 100.0 | |
| PF02826 | 178 | 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy | 100.0 | |
| TIGR00719 | 208 | sda_beta L-serine dehydratase, iron-sulfur-depende | 100.0 | |
| KOG0067 | 435 | consensus Transcription factor CtBP [Transcription | 99.97 | |
| PF00389 | 133 | 2-Hacid_dh: D-isomer specific 2-hydroxyacid dehydr | 99.88 | |
| PTZ00075 | 476 | Adenosylhomocysteinase; Provisional | 99.86 | |
| PRK06545 | 359 | prephenate dehydrogenase; Validated | 99.83 | |
| TIGR02853 | 287 | spore_dpaA dipicolinic acid synthetase, A subunit. | 99.79 | |
| PRK08818 | 370 | prephenate dehydrogenase; Provisional | 99.75 | |
| PRK08306 | 296 | dipicolinate synthase subunit A; Reviewed | 99.61 | |
| PLN02494 | 477 | adenosylhomocysteinase | 99.58 | |
| TIGR00936 | 406 | ahcY adenosylhomocysteinase. This enzyme hydrolyze | 99.49 | |
| PRK13403 | 335 | ketol-acid reductoisomerase; Provisional | 99.47 | |
| COG1760 | 262 | SdaA L-serine deaminase [Amino acid transport and | 99.44 | |
| PRK07417 | 279 | arogenate dehydrogenase; Reviewed | 99.4 | |
| PRK05476 | 425 | S-adenosyl-L-homocysteine hydrolase; Provisional | 99.38 | |
| PLN02256 | 304 | arogenate dehydrogenase | 99.37 | |
| PRK07502 | 307 | cyclohexadienyl dehydrogenase; Validated | 99.33 | |
| PLN02712 | 667 | arogenate dehydrogenase | 99.27 | |
| COG0287 | 279 | TyrA Prephenate dehydrogenase [Amino acid transpor | 99.26 | |
| PRK08655 | 437 | prephenate dehydrogenase; Provisional | 99.24 | |
| PRK08507 | 275 | prephenate dehydrogenase; Validated | 99.2 | |
| PF00670 | 162 | AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase | 99.2 | |
| PF03446 | 163 | NAD_binding_2: NAD binding domain of 6-phosphogluc | 99.19 | |
| COG2084 | 286 | MmsB 3-hydroxyisobutyrate dehydrogenase and relate | 99.17 | |
| PRK11559 | 296 | garR tartronate semialdehyde reductase; Provisiona | 99.15 | |
| TIGR01505 | 291 | tartro_sem_red 2-hydroxy-3-oxopropionate reductase | 99.13 | |
| PRK05479 | 330 | ketol-acid reductoisomerase; Provisional | 99.06 | |
| PLN02712 | 667 | arogenate dehydrogenase | 99.04 | |
| PRK15461 | 296 | NADH-dependent gamma-hydroxybutyrate dehydrogenase | 99.04 | |
| cd00401 | 413 | AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado | 99.03 | |
| PRK11199 | 374 | tyrA bifunctional chorismate mutase/prephenate deh | 99.02 | |
| PRK12490 | 299 | 6-phosphogluconate dehydrogenase-like protein; Rev | 99.01 | |
| PRK14806 | 735 | bifunctional cyclohexadienyl dehydrogenase/ 3-phos | 98.99 | |
| PF03315 | 157 | SDH_beta: Serine dehydratase beta chain; InterPro: | 98.97 | |
| PRK09599 | 301 | 6-phosphogluconate dehydrogenase-like protein; Rev | 98.93 | |
| PRK15059 | 292 | tartronate semialdehyde reductase; Provisional | 98.89 | |
| PLN02350 | 493 | phosphogluconate dehydrogenase (decarboxylating) | 98.83 | |
| PRK15040 | 454 | L-serine dehydratase TdcG; Provisional | 98.82 | |
| TIGR00465 | 314 | ilvC ketol-acid reductoisomerase. This is the seco | 98.79 | |
| PRK05225 | 487 | ketol-acid reductoisomerase; Validated | 98.74 | |
| TIGR00872 | 298 | gnd_rel 6-phosphogluconate dehydrogenase (decarbox | 98.74 | |
| TIGR01692 | 288 | HIBADH 3-hydroxyisobutyrate dehydrogenase. This en | 98.71 | |
| PLN02858 | 1378 | fructose-bisphosphate aldolase | 98.7 | |
| cd04902 | 73 | ACT_3PGDH-xct C-terminal ACT (regulatory) domain o | 98.68 | |
| PLN02858 | 1378 | fructose-bisphosphate aldolase | 98.68 | |
| PRK15023 | 454 | L-serine deaminase; Provisional | 98.68 | |
| PLN02545 | 295 | 3-hydroxybutyryl-CoA dehydrogenase | 98.67 | |
| PF07991 | 165 | IlvN: Acetohydroxy acid isomeroreductase, catalyti | 98.66 | |
| PTZ00142 | 470 | 6-phosphogluconate dehydrogenase; Provisional | 98.65 | |
| PRK08293 | 287 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 98.64 | |
| PF02153 | 258 | PDH: Prephenate dehydrogenase; InterPro: IPR003099 | 98.63 | |
| COG0499 | 420 | SAM1 S-adenosylhomocysteine hydrolase [Coenzyme me | 98.63 | |
| KOG0409 | 327 | consensus Predicted dehydrogenase [General functio | 98.61 | |
| PRK09260 | 288 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 98.6 | |
| cd01075 | 200 | NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l | 98.59 | |
| TIGR00873 | 467 | gnd 6-phosphogluconate dehydrogenase, decarboxylat | 98.55 | |
| PLN02688 | 266 | pyrroline-5-carboxylate reductase | 98.53 | |
| PF03807 | 96 | F420_oxidored: NADP oxidoreductase coenzyme F420-d | 98.53 | |
| TIGR00518 | 370 | alaDH alanine dehydrogenase. The family of known L | 98.53 | |
| PRK14619 | 308 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 98.52 | |
| PRK11064 | 415 | wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro | 98.51 | |
| KOG1370 | 434 | consensus S-adenosylhomocysteine hydrolase [Coenzy | 98.49 | |
| cd04901 | 69 | ACT_3PGDH C-terminal ACT (regulatory) domain of D- | 98.45 | |
| TIGR00561 | 511 | pntA NAD(P) transhydrogenase, alpha subunit. In so | 98.45 | |
| PRK07066 | 321 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 98.44 | |
| PRK15182 | 425 | Vi polysaccharide biosynthesis protein TviB; Provi | 98.43 | |
| PRK07530 | 292 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 98.42 | |
| PRK14194 | 301 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 98.4 | |
| PRK07819 | 286 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 98.37 | |
| cd01065 | 155 | NAD_bind_Shikimate_DH NAD(P) binding domain of Shi | 98.35 | |
| PRK07679 | 279 | pyrroline-5-carboxylate reductase; Reviewed | 98.35 | |
| PRK06129 | 308 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 98.31 | |
| PRK05808 | 282 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 98.31 | |
| PRK12491 | 272 | pyrroline-5-carboxylate reductase; Reviewed | 98.3 | |
| PRK14189 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 98.28 | |
| PRK13302 | 271 | putative L-aspartate dehydrogenase; Provisional | 98.28 | |
| cd04903 | 71 | ACT_LSD C-terminal ACT domain of the L-serine dehy | 98.27 | |
| PRK08268 | 507 | 3-hydroxy-acyl-CoA dehydrogenase; Validated | 98.26 | |
| PRK06035 | 291 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 98.26 | |
| cd04879 | 71 | ACT_3PGDH-like ACT_3PGDH-like CD includes the C-te | 98.25 | |
| TIGR03026 | 411 | NDP-sugDHase nucleotide sugar dehydrogenase. All o | 98.24 | |
| TIGR00720 | 455 | sda_mono L-serine dehydratase, iron-sulfur-depende | 98.24 | |
| PRK09424 | 509 | pntA NAD(P) transhydrogenase subunit alpha; Provis | 98.23 | |
| PF01842 | 66 | ACT: ACT domain; InterPro: IPR002912 The ACT domai | 98.21 | |
| PRK07531 | 495 | bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe | 98.21 | |
| PRK06130 | 311 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 98.21 | |
| PRK14188 | 296 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 98.18 | |
| PRK14618 | 328 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 98.17 | |
| cd01080 | 168 | NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of | 98.13 | |
| PRK14179 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 98.12 | |
| PRK00094 | 325 | gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr | 98.09 | |
| TIGR02279 | 503 | PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa | 98.08 | |
| PRK06476 | 258 | pyrroline-5-carboxylate reductase; Reviewed | 98.02 | |
| PRK11880 | 267 | pyrroline-5-carboxylate reductase; Reviewed | 98.02 | |
| PRK15057 | 388 | UDP-glucose 6-dehydrogenase; Provisional | 98.0 | |
| PRK14175 | 286 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.99 | |
| PRK07680 | 273 | late competence protein ComER; Validated | 97.97 | |
| PF10727 | 127 | Rossmann-like: Rossmann-like domain; InterPro: IPR | 97.97 | |
| cd04878 | 72 | ACT_AHAS N-terminal ACT domain of the Escherichia | 97.96 | |
| COG1023 | 300 | Gnd Predicted 6-phosphogluconate dehydrogenase [Ca | 97.96 | |
| TIGR01724 | 341 | hmd_rel H2-forming N(5),N(10)-methenyltetrahydrome | 97.96 | |
| PRK08229 | 341 | 2-dehydropantoate 2-reductase; Provisional | 97.94 | |
| COG2085 | 211 | Predicted dinucleotide-binding enzymes [General fu | 97.93 | |
| PRK06928 | 277 | pyrroline-5-carboxylate reductase; Reviewed | 97.93 | |
| TIGR01915 | 219 | npdG NADPH-dependent F420 reductase. This model re | 97.92 | |
| KOG2380 | 480 | consensus Prephenate dehydrogenase (NADP+) [Amino | 97.9 | |
| cd05191 | 86 | NAD_bind_amino_acid_DH NAD(P) binding domain of am | 97.89 | |
| COG0059 | 338 | IlvC Ketol-acid reductoisomerase [Amino acid trans | 97.89 | |
| PF01488 | 135 | Shikimate_DH: Shikimate / quinate 5-dehydrogenase; | 97.85 | |
| PRK05472 | 213 | redox-sensing transcriptional repressor Rex; Provi | 97.78 | |
| cd04889 | 56 | ACT_PDH-BS-like C-terminal ACT domain of the monof | 97.77 | |
| PRK13304 | 265 | L-aspartate dehydrogenase; Reviewed | 97.76 | |
| PF02882 | 160 | THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cycl | 97.76 | |
| TIGR01546 | 333 | GAPDH-II_archae glyceraldehyde-3-phosphate dehydro | 97.74 | |
| PRK10792 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.74 | |
| TIGR01035 | 417 | hemA glutamyl-tRNA reductase. This enzyme, togethe | 97.72 | |
| cd05311 | 226 | NAD_bind_2_malic_enz NAD(P) binding domain of mali | 97.71 | |
| PF03721 | 185 | UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen | 97.71 | |
| cd05212 | 140 | NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding dom | 97.71 | |
| PRK09287 | 459 | 6-phosphogluconate dehydrogenase; Validated | 97.7 | |
| cd01079 | 197 | NAD_bind_m-THF_DH NAD binding domain of methylene- | 97.69 | |
| PRK07634 | 245 | pyrroline-5-carboxylate reductase; Reviewed | 97.67 | |
| COG0345 | 266 | ProC Pyrroline-5-carboxylate reductase [Amino acid | 97.66 | |
| PF01262 | 168 | AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal | 97.65 | |
| PF01210 | 157 | NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate | 97.65 | |
| cd05213 | 311 | NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain | 97.64 | |
| PRK06349 | 426 | homoserine dehydrogenase; Provisional | 97.63 | |
| PRK12921 | 305 | 2-dehydropantoate 2-reductase; Provisional | 97.62 | |
| PRK14176 | 287 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.62 | |
| cd04874 | 72 | ACT_Af1403 N-terminal ACT domain of the yet unchar | 97.6 | |
| PRK14178 | 279 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.59 | |
| PRK14191 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.59 | |
| PRK00045 | 423 | hemA glutamyl-tRNA reductase; Reviewed | 97.58 | |
| PRK06522 | 304 | 2-dehydropantoate 2-reductase; Reviewed | 97.55 | |
| PRK14192 | 283 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.54 | |
| PF02737 | 180 | 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind | 97.53 | |
| PLN00203 | 519 | glutamyl-tRNA reductase | 97.52 | |
| COG0677 | 436 | WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenas | 97.49 | |
| PTZ00431 | 260 | pyrroline carboxylate reductase; Provisional | 97.46 | |
| PRK14170 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.46 | |
| cd04883 | 72 | ACT_AcuB C-terminal ACT domain of the Bacillus sub | 97.45 | |
| PRK14183 | 281 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.45 | |
| PRK12557 | 342 | H(2)-dependent methylenetetrahydromethanopterin de | 97.44 | |
| PRK14982 | 340 | acyl-ACP reductase; Provisional | 97.43 | |
| PRK14171 | 288 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.43 | |
| cd04882 | 65 | ACT_Bt0572_2 C-terminal ACT domain of a novel prot | 97.42 | |
| PF13291 | 80 | ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A. | 97.41 | |
| PRK00258 | 278 | aroE shikimate 5-dehydrogenase; Reviewed | 97.37 | |
| PRK06249 | 313 | 2-dehydropantoate 2-reductase; Provisional | 97.36 | |
| PRK14186 | 297 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.36 | |
| PRK14190 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.36 | |
| PRK14169 | 282 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.35 | |
| cd04908 | 66 | ACT_Bt0572_1 N-terminal ACT domain of a novel prot | 97.34 | |
| cd01076 | 227 | NAD_bind_1_Glu_DH NAD(P) binding domain of glutama | 97.33 | |
| PF03720 | 106 | UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogen | 97.31 | |
| PRK11152 | 76 | ilvM acetolactate synthase 2 regulatory subunit; P | 97.3 | |
| PRK11861 | 673 | bifunctional prephenate dehydrogenase/3-phosphoshi | 97.3 | |
| cd01078 | 194 | NAD_bind_H4MPT_DH NADP binding domain of methylene | 97.3 | |
| cd04881 | 79 | ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-termin | 97.29 | |
| PRK06737 | 76 | acetolactate synthase 1 regulatory subunit; Valida | 97.29 | |
| PLN02516 | 299 | methylenetetrahydrofolate dehydrogenase (NADP+) | 97.28 | |
| PRK14166 | 282 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.24 | |
| PRK08178 | 96 | acetolactate synthase 1 regulatory subunit; Review | 97.24 | |
| PLN02897 | 345 | tetrahydrofolate dehydrogenase/cyclohydrolase, put | 97.23 | |
| PRK14177 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.22 | |
| cd05313 | 254 | NAD_bind_2_Glu_DH NAD(P) binding domain of glutama | 97.22 | |
| PRK06444 | 197 | prephenate dehydrogenase; Provisional | 97.22 | |
| PLN02616 | 364 | tetrahydrofolate dehydrogenase/cyclohydrolase, put | 97.22 | |
| PRK14181 | 287 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.21 | |
| PRK08577 | 136 | hypothetical protein; Provisional | 97.21 | |
| COG0686 | 371 | Ald Alanine dehydrogenase [Amino acid transport an | 97.21 | |
| PRK13562 | 84 | acetolactate synthase 1 regulatory subunit; Provis | 97.21 | |
| PRK14173 | 287 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.2 | |
| PRK14187 | 294 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.19 | |
| PRK14172 | 278 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.18 | |
| PRK06141 | 314 | ornithine cyclodeaminase; Validated | 97.17 | |
| PLN02353 | 473 | probable UDP-glucose 6-dehydrogenase | 97.17 | |
| PRK14180 | 282 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.16 | |
| PRK14182 | 282 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.14 | |
| PF13710 | 63 | ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B. | 97.12 | |
| TIGR02371 | 325 | ala_DH_arch alanine dehydrogenase, Archaeoglobus f | 97.1 | |
| PRK14031 | 444 | glutamate dehydrogenase; Provisional | 97.08 | |
| PRK14193 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.04 | |
| PF13241 | 103 | NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_ | 97.03 | |
| PRK09414 | 445 | glutamate dehydrogenase; Provisional | 97.0 | |
| cd04888 | 76 | ACT_PheB-BS C-terminal ACT domain of a small (~147 | 96.99 | |
| TIGR00507 | 270 | aroE shikimate 5-dehydrogenase. This model finds p | 96.99 | |
| PRK14184 | 286 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.98 | |
| TIGR01763 | 305 | MalateDH_bact malate dehydrogenase, NAD-dependent. | 96.98 | |
| PRK00194 | 90 | hypothetical protein; Validated | 96.98 | |
| PRK14030 | 445 | glutamate dehydrogenase; Provisional | 96.97 | |
| TIGR01921 | 324 | DAP-DH diaminopimelate dehydrogenase. This model r | 96.96 | |
| PRK07340 | 304 | ornithine cyclodeaminase; Validated | 96.95 | |
| TIGR00119 | 157 | acolac_sm acetolactate synthase, small subunit. ac | 96.94 | |
| cd05211 | 217 | NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of | 96.94 | |
| COG0190 | 283 | FolD 5,10-methylene-tetrahydrofolate dehydrogenase | 96.93 | |
| PRK11895 | 161 | ilvH acetolactate synthase 3 regulatory subunit; R | 96.91 | |
| PRK14185 | 293 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.91 | |
| PRK14174 | 295 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.9 | |
| cd04887 | 74 | ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-te | 96.88 | |
| PRK14167 | 297 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.84 | |
| PRK09310 | 477 | aroDE bifunctional 3-dehydroquinate dehydratase/sh | 96.8 | |
| PRK14168 | 297 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.8 | |
| PRK13940 | 414 | glutamyl-tRNA reductase; Provisional | 96.79 | |
| PLN02477 | 410 | glutamate dehydrogenase | 96.79 | |
| PTZ00117 | 319 | malate dehydrogenase; Provisional | 96.78 | |
| PRK11730 | 715 | fadB multifunctional fatty acid oxidation complex | 96.78 | |
| COG0373 | 414 | HemA Glutamyl-tRNA reductase [Coenzyme metabolism] | 96.76 | |
| COG0362 | 473 | Gnd 6-phosphogluconate dehydrogenase [Carbohydrate | 96.75 | |
| TIGR02437 | 714 | FadB fatty oxidation complex, alpha subunit FadB. | 96.71 | |
| CHL00100 | 174 | ilvH acetohydroxyacid synthase small subunit | 96.7 | |
| TIGR01470 | 205 | cysG_Nterm siroheme synthase, N-terminal domain. T | 96.63 | |
| TIGR03376 | 342 | glycerol3P_DH glycerol-3-phosphate dehydrogenase ( | 96.63 | |
| PF01408 | 120 | GFO_IDH_MocA: Oxidoreductase family, NAD-binding R | 96.63 | |
| cd04875 | 74 | ACT_F4HF-DF N-terminal ACT domain of formyltetrahy | 96.6 | |
| cd04869 | 81 | ACT_GcvR_2 ACT domains that comprise the Glycine C | 96.6 | |
| TIGR02992 | 326 | ectoine_eutC ectoine utilization protein EutC. Mem | 96.6 | |
| PRK06718 | 202 | precorrin-2 dehydrogenase; Reviewed | 96.58 | |
| TIGR02441 | 737 | fa_ox_alpha_mit fatty acid oxidation complex, alph | 96.58 | |
| PRK14620 | 326 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 96.57 | |
| cd04893 | 77 | ACT_GcvR_1 ACT domains that comprise the Glycine C | 96.57 | |
| PRK08618 | 325 | ornithine cyclodeaminase; Validated | 96.56 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 96.54 | |
| PRK11154 | 708 | fadJ multifunctional fatty acid oxidation complex | 96.53 | |
| cd04909 | 69 | ACT_PDH-BS C-terminal ACT domain of the monofuncti | 96.52 | |
| smart00859 | 122 | Semialdhyde_dh Semialdehyde dehydrogenase, NAD bin | 96.52 | |
| PRK13301 | 267 | putative L-aspartate dehydrogenase; Provisional | 96.52 | |
| TIGR02354 | 200 | thiF_fam2 thiamine biosynthesis protein ThiF, fami | 96.51 | |
| TIGR02440 | 699 | FadJ fatty oxidation complex, alpha subunit FadJ. | 96.49 | |
| PF02558 | 151 | ApbA: Ketopantoate reductase PanE/ApbA; InterPro: | 96.44 | |
| PRK06046 | 326 | alanine dehydrogenase; Validated | 96.41 | |
| PRK12549 | 284 | shikimate 5-dehydrogenase; Reviewed | 96.41 | |
| cd04870 | 75 | ACT_PSP_1 CT domains found N-terminal of phosphose | 96.39 | |
| COG2150 | 167 | Predicted regulator of amino acid metabolism, cont | 96.39 | |
| PRK12439 | 341 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 96.38 | |
| cd04884 | 72 | ACT_CBS C-terminal ACT domain of the cystathionine | 96.37 | |
| PTZ00345 | 365 | glycerol-3-phosphate dehydrogenase; Provisional | 96.37 | |
| KOG0023 | 360 | consensus Alcohol dehydrogenase, class V [Secondar | 96.36 | |
| cd04886 | 73 | ACT_ThrD-II-like C-terminal ACT domain of biodegra | 96.36 | |
| TIGR00670 | 301 | asp_carb_tr aspartate carbamoyltransferase. Ornith | 96.35 | |
| COG0334 | 411 | GdhA Glutamate dehydrogenase/leucine dehydrogenase | 96.34 | |
| PRK01713 | 334 | ornithine carbamoyltransferase; Provisional | 96.33 | |
| COG4747 | 142 | ACT domain-containing protein [General function pr | 96.31 | |
| PRK01710 | 458 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 96.29 | |
| PRK00676 | 338 | hemA glutamyl-tRNA reductase; Validated | 96.28 | |
| PRK00779 | 304 | ornithine carbamoyltransferase; Provisional | 96.28 | |
| COG0240 | 329 | GpsA Glycerol-3-phosphate dehydrogenase [Energy pr | 96.27 | |
| cd04876 | 71 | ACT_RelA-SpoT ACT domain found C-terminal of the R | 96.26 | |
| PRK08291 | 330 | ectoine utilization protein EutC; Validated | 96.23 | |
| PRK06719 | 157 | precorrin-2 dehydrogenase; Validated | 96.22 | |
| TIGR03026 | 411 | NDP-sugDHase nucleotide sugar dehydrogenase. All o | 96.22 | |
| PF00208 | 244 | ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Val | 96.21 | |
| PTZ00079 | 454 | NADP-specific glutamate dehydrogenase; Provisional | 96.21 | |
| PF02423 | 313 | OCD_Mu_crystall: Ornithine cyclodeaminase/mu-cryst | 96.15 | |
| PRK13303 | 265 | L-aspartate dehydrogenase; Provisional | 96.14 | |
| TIGR00658 | 304 | orni_carb_tr ornithine carbamoyltransferase. Most | 96.13 | |
| cd04926 | 72 | ACT_ACR_4 C-terminal ACT domain, of a novel type o | 96.13 | |
| PRK06823 | 315 | ornithine cyclodeaminase; Validated | 96.12 | |
| PRK13814 | 310 | pyrB aspartate carbamoyltransferase catalytic subu | 96.11 | |
| COG1748 | 389 | LYS9 Saccharopine dehydrogenase and related protei | 96.11 | |
| cd00650 | 263 | LDH_MDH_like NAD-dependent, lactate dehydrogenase- | 96.1 | |
| PRK06199 | 379 | ornithine cyclodeaminase; Validated | 96.09 | |
| PF13740 | 76 | ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A. | 96.09 | |
| COG1712 | 255 | Predicted dinucleotide-utilizing enzyme [General f | 96.07 | |
| COG0026 | 375 | PurK Phosphoribosylaminoimidazole carboxylase (NCA | 96.06 | |
| PF00185 | 158 | OTCace: Aspartate/ornithine carbamoyltransferase, | 96.06 | |
| cd04872 | 88 | ACT_1ZPV ACT domain proteins similar to the yet un | 96.03 | |
| PRK00683 | 418 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 95.97 | |
| PRK06223 | 307 | malate dehydrogenase; Reviewed | 95.96 | |
| PRK02255 | 338 | putrescine carbamoyltransferase; Provisional | 95.95 | |
| cd04877 | 74 | ACT_TyrR N-terminal ACT domain of the TyrR protein | 95.94 | |
| COG1250 | 307 | FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabo | 95.93 | |
| PLN02353 | 473 | probable UDP-glucose 6-dehydrogenase | 95.93 | |
| PLN02527 | 306 | aspartate carbamoyltransferase | 95.93 | |
| PRK03515 | 336 | ornithine carbamoyltransferase subunit I; Provisio | 95.79 | |
| PRK04284 | 332 | ornithine carbamoyltransferase; Provisional | 95.78 | |
| TIGR02356 | 202 | adenyl_thiF thiazole biosynthesis adenylyltransfer | 95.77 | |
| PRK04435 | 147 | hypothetical protein; Provisional | 95.75 | |
| KOG2304 | 298 | consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t | 95.69 | |
| PRK00856 | 305 | pyrB aspartate carbamoyltransferase catalytic subu | 95.68 | |
| PTZ00082 | 321 | L-lactate dehydrogenase; Provisional | 95.68 | |
| PRK06407 | 301 | ornithine cyclodeaminase; Provisional | 95.68 | |
| PRK03369 | 488 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 95.65 | |
| PRK07589 | 346 | ornithine cyclodeaminase; Validated | 95.63 | |
| PRK11891 | 429 | aspartate carbamoyltransferase; Provisional | 95.62 | |
| PRK02102 | 331 | ornithine carbamoyltransferase; Validated | 95.62 | |
| TIGR03316 | 357 | ygeW probable carbamoyltransferase YgeW. Members o | 95.6 | |
| COG2423 | 330 | Predicted ornithine cyclodeaminase, mu-crystallin | 95.55 | |
| TIGR01850 | 346 | argC N-acetyl-gamma-glutamyl-phosphate reductase, | 95.55 | |
| PRK00048 | 257 | dihydrodipicolinate reductase; Provisional | 95.51 | |
| PLN02342 | 348 | ornithine carbamoyltransferase | 95.44 | |
| TIGR00655 | 280 | PurU formyltetrahydrofolate deformylase. This mode | 95.43 | |
| PF01118 | 121 | Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi | 95.4 | |
| PRK08306 | 296 | dipicolinate synthase subunit A; Reviewed | 95.38 | |
| COG5322 | 351 | Predicted dehydrogenase [General function predicti | 95.35 | |
| PRK04207 | 341 | glyceraldehyde-3-phosphate dehydrogenase; Provisio | 95.34 | |
| PRK14804 | 311 | ornithine carbamoyltransferase; Provisional | 95.34 | |
| PF01113 | 124 | DapB_N: Dihydrodipicolinate reductase, N-terminus; | 95.34 | |
| PRK08269 | 314 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 95.32 | |
| cd05312 | 279 | NAD_bind_1_malic_enz NAD(P) binding domain of mali | 95.32 | |
| cd00762 | 254 | NAD_bind_malic_enz NAD(P) binding domain of malic | 95.31 | |
| PRK13010 | 289 | purU formyltetrahydrofolate deformylase; Reviewed | 95.29 | |
| TIGR02964 | 246 | xanthine_xdhC xanthine dehydrogenase accessory pro | 95.27 | |
| PRK14106 | 450 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 95.26 | |
| COG0569 | 225 | TrkA K+ transport systems, NAD-binding component [ | 95.26 | |
| cd04900 | 73 | ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, | 95.26 | |
| PRK11064 | 415 | wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro | 95.25 | |
| COG1648 | 210 | CysG Siroheme synthase (precorrin-2 oxidase/ferroc | 95.21 | |
| PRK01390 | 460 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 95.2 | |
| COG1004 | 414 | Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en | 95.19 | |
| PRK00066 | 315 | ldh L-lactate dehydrogenase; Reviewed | 95.18 | |
| cd04873 | 70 | ACT_UUR-ACR-like ACT domains of the bacterial sign | 95.16 | |
| PRK12548 | 289 | shikimate 5-dehydrogenase; Provisional | 95.14 | |
| cd01339 | 300 | LDH-like_MDH L-lactate dehydrogenase-like malate d | 95.12 | |
| PRK12562 | 334 | ornithine carbamoyltransferase subunit F; Provisio | 95.1 | |
| PRK06019 | 372 | phosphoribosylaminoimidazole carboxylase ATPase su | 95.1 | |
| PRK02006 | 498 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 95.09 | |
| PLN02520 | 529 | bifunctional 3-dehydroquinate dehydratase/shikimat | 95.06 | |
| PRK09496 | 453 | trkA potassium transporter peripheral membrane com | 95.05 | |
| cd05293 | 312 | LDH_1 A subgroup of L-lactate dehydrogenases. L-la | 95.04 | |
| cd05292 | 308 | LDH_2 A subgroup of L-lactate dehydrogenases. L-la | 95.04 | |
| PF02254 | 116 | TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg | 95.02 | |
| TIGR01809 | 282 | Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO | 95.01 | |
| cd05291 | 306 | HicDH_like L-2-hydroxyisocapronate dehydrogenases | 95.0 | |
| PRK07232 | 752 | bifunctional malic enzyme oxidoreductase/phosphotr | 94.99 | |
| PRK02472 | 447 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 94.94 | |
| PRK12749 | 288 | quinate/shikimate dehydrogenase; Reviewed | 94.87 | |
| PRK13376 | 525 | pyrB bifunctional aspartate carbamoyltransferase c | 94.86 | |
| COG1004 | 414 | Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en | 94.84 | |
| PRK12475 | 338 | thiamine/molybdopterin biosynthesis MoeB-like prot | 94.84 | |
| cd04925 | 74 | ACT_ACR_2 ACT domain-containing protein which is c | 94.79 | |
| cd02116 | 60 | ACT ACT domains are commonly involved in specifica | 94.79 | |
| PRK00141 | 473 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 94.77 | |
| PRK08300 | 302 | acetaldehyde dehydrogenase; Validated | 94.77 | |
| COG0771 | 448 | MurD UDP-N-acetylmuramoylalanine-D-glutamate ligas | 94.75 | |
| PRK15182 | 425 | Vi polysaccharide biosynthesis protein TviB; Provi | 94.75 | |
| cd00300 | 300 | LDH_like L-lactate dehydrogenase-like enzymes. Mem | 94.64 | |
| PRK00421 | 461 | murC UDP-N-acetylmuramate--L-alanine ligase; Provi | 94.63 | |
| PRK06270 | 341 | homoserine dehydrogenase; Provisional | 94.58 | |
| cd04899 | 70 | ACT_ACR-UUR-like_2 C-terminal ACT domains of the b | 94.57 | |
| cd00757 | 228 | ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1 | 94.55 | |
| cd04905 | 80 | ACT_CM-PDT C-terminal ACT domain of the bifunction | 94.55 | |
| COG0281 | 432 | SfcA Malic enzyme [Energy production and conversio | 94.54 | |
| PRK11589 | 190 | gcvR glycine cleavage system transcriptional repre | 94.47 | |
| PF13478 | 136 | XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2 | 94.46 | |
| PF13380 | 116 | CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5 | 94.43 | |
| TIGR03215 | 285 | ac_ald_DH_ac acetaldehyde dehydrogenase (acetylati | 94.41 | |
| PRK06027 | 286 | purU formyltetrahydrofolate deformylase; Reviewed | 94.41 | |
| PRK07200 | 395 | aspartate/ornithine carbamoyltransferase family pr | 94.38 | |
| PRK11579 | 346 | putative oxidoreductase; Provisional | 94.33 | |
| PRK09880 | 343 | L-idonate 5-dehydrogenase; Provisional | 94.31 | |
| PRK12862 | 763 | malic enzyme; Reviewed | 94.29 | |
| PRK05708 | 305 | 2-dehydropantoate 2-reductase; Provisional | 94.26 | |
| KOG2653 | 487 | consensus 6-phosphogluconate dehydrogenase [Carboh | 94.26 | |
| cd05297 | 423 | GH4_alpha_glucosidase_galactosidase Glycoside Hydr | 94.25 | |
| PRK00436 | 343 | argC N-acetyl-gamma-glutamyl-phosphate reductase; | 94.24 | |
| PRK13011 | 286 | formyltetrahydrofolate deformylase; Reviewed | 94.19 | |
| PRK01438 | 480 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 94.15 | |
| COG1707 | 218 | ACT domain-containing protein [General function pr | 94.09 | |
| PRK08192 | 338 | aspartate carbamoyltransferase; Provisional | 94.07 | |
| PF00056 | 141 | Ldh_1_N: lactate/malate dehydrogenase, NAD binding | 94.06 | |
| PRK10669 | 558 | putative cation:proton antiport protein; Provision | 94.02 | |
| cd04880 | 75 | ACT_AAAH-PDT-like ACT domain of the nonheme iron-d | 93.96 | |
| cd08230 | 355 | glucose_DH Glucose dehydrogenase. Glucose dehydrog | 93.96 | |
| PRK04308 | 445 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 93.95 | |
| COG0788 | 287 | PurU Formyltetrahydrofolate hydrolase [Nucleotide | 93.94 | |
| COG0169 | 283 | AroE Shikimate 5-dehydrogenase [Amino acid transpo | 93.85 | |
| cd04928 | 68 | ACT_TyrKc Uncharacterized, N-terminal ACT domain o | 93.76 | |
| PRK05562 | 223 | precorrin-2 dehydrogenase; Provisional | 93.76 | |
| PRK07688 | 339 | thiamine/molybdopterin biosynthesis ThiF/MoeB-like | 93.73 | |
| PRK03659 | 601 | glutathione-regulated potassium-efflux system prot | 93.67 | |
| PRK04523 | 335 | N-acetylornithine carbamoyltransferase; Reviewed | 93.57 | |
| PRK05086 | 312 | malate dehydrogenase; Provisional | 93.52 | |
| PRK04690 | 468 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 93.51 | |
| PRK10637 | 457 | cysG siroheme synthase; Provisional | 93.51 | |
| PRK03803 | 448 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 93.5 | |
| PLN02968 | 381 | Probable N-acetyl-gamma-glutamyl-phosphate reducta | 93.49 | |
| PLN02948 | 577 | phosphoribosylaminoimidazole carboxylase | 93.44 | |
| PRK05690 | 245 | molybdopterin biosynthesis protein MoeB; Provision | 93.44 | |
| COG0673 | 342 | MviM Predicted dehydrogenases and related proteins | 93.43 | |
| COG0440 | 163 | IlvH Acetolactate synthase, small (regulatory) sub | 93.43 | |
| cd01486 | 307 | Apg7 Apg7 is an E1-like protein, that activates tw | 93.39 | |
| PLN02819 | 1042 | lysine-ketoglutarate reductase/saccharopine dehydr | 93.33 | |
| PRK03806 | 438 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 93.33 | |
| PRK14027 | 283 | quinate/shikimate dehydrogenase; Provisional | 93.31 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 93.09 | |
| PRK12861 | 764 | malic enzyme; Reviewed | 93.06 | |
| TIGR01532 | 325 | E4PD_g-proteo D-erythrose-4-phosphate dehydrogenas | 92.95 | |
| TIGR00036 | 266 | dapB dihydrodipicolinate reductase. | 92.89 | |
| TIGR01087 | 433 | murD UDP-N-acetylmuramoylalanine--D-glutamate liga | 92.84 | |
| COG2716 | 176 | GcvR Glycine cleavage system regulatory protein [A | 92.82 | |
| PRK15057 | 388 | UDP-glucose 6-dehydrogenase; Provisional | 92.81 | |
| PF03435 | 386 | Saccharop_dh: Saccharopine dehydrogenase ; InterPr | 92.77 | |
| PRK08762 | 376 | molybdopterin biosynthesis protein MoeB; Validated | 92.75 | |
| TIGR01381 | 664 | E1_like_apg7 E1-like protein-activating enzyme Gsa | 92.72 | |
| TIGR01161 | 352 | purK phosphoribosylaminoimidazole carboxylase, Pur | 92.71 | |
| TIGR02355 | 240 | moeB molybdopterin synthase sulfurylase MoeB. This | 92.69 | |
| PF13460 | 183 | NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X | 92.68 | |
| cd05188 | 271 | MDR Medium chain reductase/dehydrogenase (MDR)/zin | 92.66 | |
| PRK03815 | 401 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 92.63 | |
| TIGR03366 | 280 | HpnZ_proposed putative phosphonate catabolism asso | 92.58 | |
| TIGR02853 | 287 | spore_dpaA dipicolinic acid synthetase, A subunit. | 92.57 | |
| cd01483 | 143 | E1_enzyme_family Superfamily of activating enzymes | 92.55 | |
| PRK03562 | 621 | glutathione-regulated potassium-efflux system prot | 92.53 | |
| COG1893 | 307 | ApbA Ketopantoate reductase [Coenzyme metabolism] | 92.48 | |
| cd04927 | 76 | ACT_ACR-like_2 Second ACT domain, of a novel type | 92.4 | |
| TIGR02822 | 329 | adh_fam_2 zinc-binding alcohol dehydrogenase famil | 92.31 | |
| PTZ00325 | 321 | malate dehydrogenase; Provisional | 92.29 | |
| COG3830 | 90 | ACT domain-containing protein [Signal transduction | 92.25 | |
| PLN02272 | 421 | glyceraldehyde-3-phosphate dehydrogenase | 92.22 | |
| PRK01368 | 454 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 92.21 | |
| PLN02602 | 350 | lactate dehydrogenase | 92.17 | |
| PRK08644 | 212 | thiamine biosynthesis protein ThiF; Provisional | 92.13 | |
| cd04895 | 72 | ACT_ACR_1 ACT domain-containing protein which is c | 92.0 | |
| PRK09496 | 453 | trkA potassium transporter peripheral membrane com | 91.9 | |
| PLN02586 | 360 | probable cinnamyl alcohol dehydrogenase | 91.85 | |
| PF04016 | 147 | DUF364: Domain of unknown function (DUF364); Inter | 91.81 | |
| PRK07877 | 722 | hypothetical protein; Provisional | 91.79 | |
| cd04896 | 75 | ACT_ACR-like_3 ACT domain-containing protein which | 91.76 | |
| KOG2663 | 309 | consensus Acetolactate synthase, small subunit [Am | 91.74 | |
| PRK14805 | 302 | ornithine carbamoyltransferase; Provisional | 91.74 | |
| COG3288 | 356 | PntA NAD/NADP transhydrogenase alpha subunit [Ener | 91.72 | |
| cd04906 | 85 | ACT_ThrD-I_1 First of two tandem C-terminal ACT do | 91.6 | |
| PF05368 | 233 | NmrA: NmrA-like family; InterPro: IPR008030 NmrA i | 91.59 | |
| PRK08223 | 287 | hypothetical protein; Validated | 91.48 | |
| PRK10206 | 344 | putative oxidoreductase; Provisional | 91.39 | |
| PRK10872 | 743 | relA (p)ppGpp synthetase I/GTP pyrophosphokinase; | 91.36 | |
| cd05294 | 309 | LDH-like_MDH_nadp A lactate dehydrogenases-like st | 91.23 | |
| CHL00194 | 317 | ycf39 Ycf39; Provisional | 91.23 | |
| COG0078 | 310 | ArgF Ornithine carbamoyltransferase [Amino acid tr | 91.22 | |
| PRK11589 | 190 | gcvR glycine cleavage system transcriptional repre | 91.08 | |
| PLN02178 | 375 | cinnamyl-alcohol dehydrogenase | 91.05 | |
| cd08239 | 339 | THR_DH_like L-threonine dehydrogenase (TDH)-like. | 90.93 | |
| cd05283 | 337 | CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnam | 90.93 | |
| PRK15076 | 431 | alpha-galactosidase; Provisional | 90.87 | |
| cd01487 | 174 | E1_ThiF_like E1_ThiF_like. Member of superfamily o | 90.87 | |
| cd05290 | 307 | LDH_3 A subgroup of L-lactate dehydrogenases. L-la | 90.81 | |
| TIGR03201 | 349 | dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co | 90.8 | |
| TIGR01761 | 343 | thiaz-red thiazolinyl imide reductase. This reduct | 90.79 | |
| PRK12550 | 272 | shikimate 5-dehydrogenase; Reviewed | 90.78 | |
| PLN00106 | 323 | malate dehydrogenase | 90.45 | |
| PRK13529 | 563 | malate dehydrogenase; Provisional | 90.42 | |
| PRK02705 | 459 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 90.38 | |
| PRK07231 | 251 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 90.36 | |
| KOG0022 | 375 | consensus Alcohol dehydrogenase, class III [Second | 90.36 | |
| PRK12769 | 654 | putative oxidoreductase Fe-S binding subunit; Revi | 90.33 | |
| COG1063 | 350 | Tdh Threonine dehydrogenase and related Zn-depende | 90.32 | |
| cd08281 | 371 | liver_ADH_like1 Zinc-dependent alcohol dehydrogena | 90.32 | |
| PRK05600 | 370 | thiamine biosynthesis protein ThiF; Validated | 90.21 | |
| cd01336 | 325 | MDH_cytoplasmic_cytosolic Cytoplasmic and cytosoli | 90.2 | |
| PF03447 | 117 | NAD_binding_3: Homoserine dehydrogenase, NAD bindi | 90.19 | |
| PRK06382 | 406 | threonine dehydratase; Provisional | 90.05 | |
| PRK05597 | 355 | molybdopterin biosynthesis protein MoeB; Validated | 89.96 | |
| PF05222 | 136 | AlaDh_PNT_N: Alanine dehydrogenase/PNT, N-terminal | 89.93 | |
| PF02629 | 96 | CoA_binding: CoA binding domain; InterPro: IPR0037 | 89.92 | |
| cd01338 | 322 | MDH_choloroplast_like Chloroplast-like malate dehy | 89.92 | |
| TIGR01202 | 308 | bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl | 89.8 | |
| PRK06182 | 273 | short chain dehydrogenase; Validated | 89.76 | |
| TIGR01082 | 448 | murC UDP-N-acetylmuramate--alanine ligase. UDP-N-a | 89.72 | |
| cd04885 | 68 | ACT_ThrD-I Tandem C-terminal ACT domains of threon | 89.71 | |
| cd08237 | 341 | ribitol-5-phosphate_DH ribitol-5-phosphate dehydro | 89.7 | |
| PRK07411 | 390 | hypothetical protein; Validated | 89.69 | |
| PRK12809 | 639 | putative oxidoreductase Fe-S binding subunit; Revi | 89.37 | |
| TIGR01759 | 323 | MalateDH-SF1 malate dehydrogenase. This model repr | 89.18 | |
| PRK12814 | 652 | putative NADPH-dependent glutamate synthase small | 89.05 | |
| PF00899 | 135 | ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a | 89.03 | |
| PLN02819 | 1042 | lysine-ketoglutarate reductase/saccharopine dehydr | 88.85 | |
| PRK11863 | 313 | N-acetyl-gamma-glutamyl-phosphate reductase; Provi | 88.82 | |
| PRK06392 | 326 | homoserine dehydrogenase; Provisional | 88.79 | |
| TIGR03451 | 358 | mycoS_dep_FDH mycothiol-dependent formaldehyde deh | 88.78 | |
| cd08296 | 333 | CAD_like Cinnamyl alcohol dehydrogenases (CAD). Ci | 88.71 | |
| PRK14573 | 809 | bifunctional D-alanyl-alanine synthetase A/UDP-N-a | 88.63 | |
| PLN02740 | 381 | Alcohol dehydrogenase-like | 88.52 | |
| TIGR01851 | 310 | argC_other N-acetyl-gamma-glutamyl-phosphate reduc | 88.51 | |
| PRK04663 | 438 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 88.37 | |
| TIGR01318 | 467 | gltD_gamma_fam glutamate synthase small subunit fa | 88.29 | |
| PRK06128 | 300 | oxidoreductase; Provisional | 88.25 | |
| PRK11092 | 702 | bifunctional (p)ppGpp synthetase II/ guanosine-3', | 88.19 |
| >TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-113 Score=956.43 Aligned_cols=517 Identities=44% Similarity=0.712 Sum_probs=487.9
Q ss_pred eEEEeCCCCHhHHHHhhcC-CcEEEecCCCHhHHHhhcCCCeEEEEcCCCCCCHHHHHhcCCcceeEEecccccCcccHh
Q 006864 92 TILVSEKLGEAGLAILRSF-GNVECLYDLSPEALCEKISQCDALIVRSGTKVTRSVFEAANGKLKVVGRAGVGIDNVDLQ 170 (628)
Q Consensus 92 ~vlv~~~l~~~~~~~l~~~-~~v~~~~~~~~~el~~~~~~~d~liv~~~~~v~~~~l~~~~~~Lk~I~~~g~G~D~iDl~ 170 (628)
|||+++++.++.++.|++. .++......+++++.+.++++|++++++.+++++++++++ |+||||+++|+||||||++
T Consensus 1 ~vli~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~li~~~~~~~~~~~l~~~-~~Lk~I~~~~~G~d~id~~ 79 (525)
T TIGR01327 1 KVLIADPISPDGIDILEDVGVEVDVQTGLSREELLEIIPDYDALIVRSATKVTEEVIAAA-PKLKVIGRAGVGVDNIDIE 79 (525)
T ss_pred CEEEeCCCCHHHHHHHHhcCcEEEeCCCCCHHHHHHHhcCCCEEEEcCCCCcCHHHHhhC-CCceEEEECCcccchhcHH
Confidence 4889999999999888765 3666544567889999999999999998889999999988 5999999999999999999
Q ss_pred HHHhcCceEEcCCCCChhhHHHHHHHHHHHHHHchhHHHHHHHcCcccccccceeeecCCeEEEEecChhHHHHHHHHHc
Q 006864 171 AATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKG 250 (628)
Q Consensus 171 aa~~~GI~V~n~p~~~~~avAE~~l~l~L~~~R~i~~~~~~~~~g~W~~~~~~g~~l~GktiGIIGlG~IG~~vA~~l~~ 250 (628)
+|+++||.|+|+|++|+.+||||+++|||+++|+++++++.+++|+|.+..+.|.+|+|||+||||+|+||+.+|++|++
T Consensus 80 ~~~~~gI~V~n~pg~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~~~~g~~l~gktvgIiG~G~IG~~vA~~l~~ 159 (525)
T TIGR01327 80 AATARGILVVNAPTGNTISAAEHALAMLLAAARNIPQADASLKEGEWDRKAFMGTELYGKTLGVIGLGRIGSIVAKRAKA 159 (525)
T ss_pred HHHHCCCEEEeCCCcChHHHHHHHHHHHHHHhcCHHHHHHHHHcCCccccccCccccCCCEEEEECCCHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999986677899999999999999999999999999
Q ss_pred CCCEEEEECCCCChhHHHHcCCccc-CHHHHhccCCEEEEcCCCCccccccccHHHHhcCCCCcEEEEcCCCchhcHHHH
Q 006864 251 LGMNVIAHDPYAPADKARAVGVELV-SFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEAL 329 (628)
Q Consensus 251 ~G~~V~~~d~~~~~~~a~~~g~~~~-sl~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~~vde~aL 329 (628)
|||+|++|||+.+.+.+...++..+ ++++++++||+|++|+|++++|+++||++.|++||+|++|||||||++||++||
T Consensus 160 fG~~V~~~d~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL 239 (525)
T TIGR01327 160 FGMKVLAYDPYISPERAEQLGVELVDDLDELLARADFITVHTPLTPETRGLIGAEELAKMKKGVIIVNCARGGIIDEAAL 239 (525)
T ss_pred CCCEEEEECCCCChhHHHhcCCEEcCCHHHHHhhCCEEEEccCCChhhccCcCHHHHhcCCCCeEEEEcCCCceeCHHHH
Confidence 9999999999866666667787766 899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCeeEEEeeccCCCCCCCCCccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCcccCCCCCcc
Q 006864 330 VRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKEAQEGVAIEIAEAVVGALRGELSATAINAPMVPSE 409 (628)
Q Consensus 330 ~~aL~~g~i~ga~lDV~~~EP~~~~~~L~~~~nvilTPHig~~T~ea~~~~~~~~~~~i~~~l~g~~~~~~vn~p~~~~~ 409 (628)
++||++|+|+||+||||+.||+ .++|||++|||++|||+|++|.|++++++..+++|+.+|++|+++.+.||.|.++++
T Consensus 240 ~~aL~~g~i~gAaLDVf~~EP~-~~~pL~~~~nvi~TPHia~~t~e~~~~~~~~~~~ni~~~~~g~~~~~~vn~~~~~~~ 318 (525)
T TIGR01327 240 YEALEEGHVRAAALDVFEKEPP-TDNPLFDLDNVIATPHLGASTREAQENVATQVAEQVLDALKGLPVPNAVNAPGIDAD 318 (525)
T ss_pred HHHHHcCCeeEEEEecCCCCCC-CCChhhcCCCeEECCCccccHHHHHHHHHHHHHHHHHHHHcCCCCCceeeCCCCCch
Confidence 9999999999999999999996 589999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccHHHHHHHHhHHHHHHhcCCCCceEEEEEEeecCCCCCCCcccchHHHHHhhccccccCcccccchHhHHhhcC
Q 006864 410 VLSELAPYVVLAKKLGRLAVQLVSGGSGIKSVKLIYRSARDPDDLDTRILRAMITKGIIEPISASFINLVNADFTAKQKG 489 (628)
Q Consensus 410 ~~~~~~p~~~lAerlG~la~qL~~g~~~~~~v~i~~~Gs~a~~~~~~~~~~~a~l~GlL~~~~~~~vnlvNA~~iAke~G 489 (628)
.+++++||++||+|||++++||+++ .+++++|+|+|||+ . +++|++++|+++|+|+...++++|++||+.+|||+|
T Consensus 319 ~~~~~~~~~~la~riG~~a~ql~~~--~~~~v~i~~~GsfA-~-~~~~~~~~a~l~GlL~~~~~~d~~~~nA~~iA~e~G 394 (525)
T TIGR01327 319 VMEKLKPYLDLAEKLGKLAGQLLDG--AVQSVEVTYRGELA-T-ENSEPLTRAALKGLLSPVLDDEVNMVNAPAVAKERG 394 (525)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHcCC--CceEEEEEEEcchh-c-ccccHHHHHHHHHhCccccCCCccccCHHHHHHHcC
Confidence 9999999999999999999999988 89999999999998 4 599999999999999887776899999999999999
Q ss_pred ceEEEEEeecCCCCCCCCceEEEEEEecccccceeeCCCcEEEEEEEEEC-CeeEEEEECceeEEeecCCcEEEEeccCC
Q 006864 490 LRISEERVVADSSPEFPIDSIQVQLSNVDSKFAAAVSENGEISIEGKVKF-GIPHLTRVGSFGVDASLEGNLILCRQVDQ 568 (628)
Q Consensus 490 I~i~~~~~~~~~~~~~~~ntv~v~l~~~~~~~~~~~~~~~~~~v~Gt~~g-G~~~I~~Idgf~Vd~~~~~~~Llv~~~D~ 568 (628)
|+|.|.+.+.. ..|||+++++++ +++++++|.|+|+| |.++|++||||+|++.|++|+|++.|.|+
T Consensus 395 I~v~~~~~~~~---~~hpNtv~i~l~----------~~~~~~~v~G~s~gGg~~~I~~ing~~v~~~~~~~~li~~~~D~ 461 (525)
T TIGR01327 395 ITVEESKSESS---PDYKNYLSVTVT----------GDSGTVSVAGTVFGGFSPRIVEIDGFHVDLEPEGIMLIILHLDK 461 (525)
T ss_pred CEEEEEEccCC---CCCCCEEEEEEE----------eCCcEEEEEEEEecCCcEEEEEECCEEEEEecCccEEEEEecCc
Confidence 99999877643 489999999997 45678999999997 79999999999999999999999999999
Q ss_pred CCchhhHHhhhhcCCccccceEEeeeecCccEEEEEEeCCCCCHHHHHHHhcccCcccc
Q 006864 569 PGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDEEPNQDSLKEIGKVHFVARI 627 (628)
Q Consensus 569 PGvIa~V~~iL~~~~INIa~m~v~R~~~gg~Al~~i~vD~~~~~~~l~~L~~l~~v~~v 627 (628)
||+|++|+++|++++|||++|+++|..+|++|+|+|++|++++++++++|+++++|.++
T Consensus 462 pG~I~~v~~~L~~~~iNIa~m~~~R~~~g~~al~~i~~D~~v~~~~l~~i~~~~~i~~v 520 (525)
T TIGR01327 462 PGVIGKVGTLLGTAGINIASMQLGRKEKGGEALMLLSLDQPVPDEVLEEIKAIPDILSV 520 (525)
T ss_pred CCcchHHHhHHhhcCCChHHcEeecCCCCCeEEEEEEcCCCCCHHHHHHHhcCCCccEE
Confidence 99999999999999999999999999999999999999999999999999999998875
|
This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli. |
| >PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-111 Score=947.30 Aligned_cols=517 Identities=49% Similarity=0.746 Sum_probs=487.2
Q ss_pred eEEEeCCCCHhHHHHhhcCC--cEEEecCCCHhHHHhhcCCCeEEEEcCCCCCCHHHHHhcCCcceeEEecccccCcccH
Q 006864 92 TILVSEKLGEAGLAILRSFG--NVECLYDLSPEALCEKISQCDALIVRSGTKVTRSVFEAANGKLKVVGRAGVGIDNVDL 169 (628)
Q Consensus 92 ~vlv~~~l~~~~~~~l~~~~--~v~~~~~~~~~el~~~~~~~d~liv~~~~~v~~~~l~~~~~~Lk~I~~~g~G~D~iDl 169 (628)
||++++++.+..++.|++.. ++......+++++.+.++++|++++++.+++++++++++ |+||||+++|+||||||+
T Consensus 2 ~ili~~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~l~~~-~~Lk~I~~~~~G~d~id~ 80 (526)
T PRK13581 2 KVLVSDPISPAGLEILKDAPGVEVDVKTGLDKEELLEIIGDYDALIVRSATKVTAEVLEAA-KNLKVIGRAGVGVDNVDV 80 (526)
T ss_pred eEEEeCCCCHHHHHHHhccCCeEEEeCCCCCHHHHHHHhcCCCEEEEcCCCCCCHHHHhhC-CCCeEEEECCcccccccH
Confidence 68999999998888888752 444434557889999999999999988789999999988 599999999999999999
Q ss_pred hHHHhcCceEEcCCCCChhhHHHHHHHHHHHHHHchhHHHHHHHcCcccccccceeeecCCeEEEEecChhHHHHHHHHH
Q 006864 170 QAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAK 249 (628)
Q Consensus 170 ~aa~~~GI~V~n~p~~~~~avAE~~l~l~L~~~R~i~~~~~~~~~g~W~~~~~~g~~l~GktiGIIGlG~IG~~vA~~l~ 249 (628)
++|+++||.|+|+|++|+.+||||+++|||+++|+++++++.+++|+|.+..+.|.+|+|||+||||+|+||+.+|++|+
T Consensus 81 ~~~~~~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~W~~~~~~g~~l~gktvgIiG~G~IG~~vA~~l~ 160 (526)
T PRK13581 81 PAATRRGIIVVNAPTGNTISAAEHTIALMLALARNIPQAHASLKAGKWERKKFMGVELYGKTLGIIGLGRIGSEVAKRAK 160 (526)
T ss_pred HHHHHCCCEEEeCCCCChHHHHHHHHHHHHHHHcCHHHHHHHHHcCCCCccCccccccCCCEEEEECCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999987666789999999999999999999999999
Q ss_pred cCCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEcCCCCccccccccHHHHhcCCCCcEEEEcCCCchhcHHHH
Q 006864 250 GLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEAL 329 (628)
Q Consensus 250 ~~G~~V~~~d~~~~~~~a~~~g~~~~sl~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~~vde~aL 329 (628)
+|||+|++|||+.+.+.+...+++.+++++++++||+|++|+|++++|++++|++.|++||+|++|||++||++||++||
T Consensus 161 ~fG~~V~~~d~~~~~~~~~~~g~~~~~l~ell~~aDiV~l~lP~t~~t~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL 240 (526)
T PRK13581 161 AFGMKVIAYDPYISPERAAQLGVELVSLDELLARADFITLHTPLTPETRGLIGAEELAKMKPGVRIINCARGGIIDEAAL 240 (526)
T ss_pred hCCCEEEEECCCCChhHHHhcCCEEEcHHHHHhhCCEEEEccCCChHhhcCcCHHHHhcCCCCeEEEECCCCceeCHHHH
Confidence 99999999999876666667788888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCeeEEEeeccCCCCCCCCCccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCcccCCCCCcc
Q 006864 330 VRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKEAQEGVAIEIAEAVVGALRGELSATAINAPMVPSE 409 (628)
Q Consensus 330 ~~aL~~g~i~ga~lDV~~~EP~~~~~~L~~~~nvilTPHig~~T~ea~~~~~~~~~~~i~~~l~g~~~~~~vn~p~~~~~ 409 (628)
++||++|+|+||+||||+.||++ ++|||++|||++|||+|++|.|++++++..+++|+.+|++|+++.++||.|.++++
T Consensus 241 ~~aL~~g~i~gAaLDVf~~EP~~-~~pL~~~~nvilTPHia~~t~e~~~~~~~~~~~ni~~~~~g~~~~~~vn~~~~~~~ 319 (526)
T PRK13581 241 AEALKSGKVAGAALDVFEKEPPT-DSPLFELPNVVVTPHLGASTAEAQENVAIQVAEQVIDALRGGPVPNAVNLPSITAE 319 (526)
T ss_pred HHHHhcCCeeEEEEecCCCCCCC-CchhhcCCCeeEcCccccchHHHHHHHHHHHHHHHHHHHcCCCcCceeeCCCCchh
Confidence 99999999999999999999975 89999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccHHHHHHHHhHHHHHHhcCCCCceEEEEEEeecCCCCCCCcccchHHHHHhhccccccCcccccchHhHHhhcC
Q 006864 410 VLSELAPYVVLAKKLGRLAVQLVSGGSGIKSVKLIYRSARDPDDLDTRILRAMITKGIIEPISASFINLVNADFTAKQKG 489 (628)
Q Consensus 410 ~~~~~~p~~~lAerlG~la~qL~~g~~~~~~v~i~~~Gs~a~~~~~~~~~~~a~l~GlL~~~~~~~vnlvNA~~iAke~G 489 (628)
.+++++||++||+|||++++||+++ .+++++|+|+|||+ .+|.+ ++++|+++|+|+...++++|++||.++|||+|
T Consensus 320 ~~~~~~~~~~la~riG~~a~ql~~~--~~~~v~i~~~Gsfa-~t~~~-~~d~A~l~GlLg~~~dd~~~~~nA~~iA~e~G 395 (526)
T PRK13581 320 EAEKLKPYLDLAEKLGSLAAQLADG--PIKSVEITYRGELA-EEDTE-PLTAAALKGLLSPVLGERVNYVNAPLLAKERG 395 (526)
T ss_pred hhHHhHHHHHHHHHHHHHHHHHcCC--CceEEEEEEecccc-ccccc-HHHHHHHHHhCccccCCCccccCHHHHHHHcC
Confidence 9999999999999999999999988 89999999999999 77775 99999999999777666699999999999999
Q ss_pred ceEEEEEeecCCCCCCCCceEEEEEEecccccceeeCCCcEEEEEEEEEC-CeeEEEEECceeEEeecCCcEEEEeccCC
Q 006864 490 LRISEERVVADSSPEFPIDSIQVQLSNVDSKFAAAVSENGEISIEGKVKF-GIPHLTRVGSFGVDASLEGNLILCRQVDQ 568 (628)
Q Consensus 490 I~i~~~~~~~~~~~~~~~ntv~v~l~~~~~~~~~~~~~~~~~~v~Gt~~g-G~~~I~~Idgf~Vd~~~~~~~Llv~~~D~ 568 (628)
|+++|.+.+.. ..|||+++|+++ +++++++|.|+|+| |.+||++||||+|++.|++|+|++.|+|+
T Consensus 396 I~~~~~~~~~~---~~hpNtv~i~l~----------~~~~~~~v~G~s~ggg~~~I~~ing~~v~~~~~~~~li~~~~D~ 462 (526)
T PRK13581 396 IEVEESKSEES---PDYSNLITVTVT----------TDDGERSVAGTVFGDGEPRIVEIDGYRVDAKPEGHMLIIRNRDR 462 (526)
T ss_pred CEEEEEEecCC---CCCCCEEEEEEE----------eCCeEEEEEEEEecCCceEEEEECCEEEEeeCCceEEEEEeCCc
Confidence 99999987644 489999999998 35578999999997 78999999999999999999999999999
Q ss_pred CCchhhHHhhhhcCCccccceEEeeeecCccEEEEEEeCCCCCHHHHHHHhcccCcccc
Q 006864 569 PGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDEEPNQDSLKEIGKVHFVARI 627 (628)
Q Consensus 569 PGvIa~V~~iL~~~~INIa~m~v~R~~~gg~Al~~i~vD~~~~~~~l~~L~~l~~v~~v 627 (628)
||+|++|+++|++++|||++|+++|..+|+.|+|+|++|++++++++++|+++++|.++
T Consensus 463 pG~I~~v~~~L~~~~iNIa~m~~~r~~~g~~al~~i~~D~~v~~~~l~~i~~~~~i~~~ 521 (526)
T PRK13581 463 PGVIGKVGTLLGEAGINIAGMQLGRREAGGEALMVLSVDDPVPEEVLEELRALPGILSA 521 (526)
T ss_pred CChhHHHHHHHhhcCCCchhcEeccCCCCCeEEEEEECCCCCCHHHHHHHhcCCCcceE
Confidence 99999999999999999999999999999999999999999999999999999999875
|
|
| >KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-90 Score=705.05 Aligned_cols=398 Identities=61% Similarity=0.871 Sum_probs=383.2
Q ss_pred CCeEEEeCCCCHhHHHHhhcCC-cEEEecCCCHhHHHhhcCCCeEEEEcCCCCCCHHHHHhcCCcceeEEecccccCccc
Q 006864 90 KPTILVSEKLGEAGLAILRSFG-NVECLYDLSPEALCEKISQCDALIVRSGTKVTRSVFEAANGKLKVVGRAGVGIDNVD 168 (628)
Q Consensus 90 ~~~vlv~~~l~~~~~~~l~~~~-~v~~~~~~~~~el~~~~~~~d~liv~~~~~v~~~~l~~~~~~Lk~I~~~g~G~D~iD 168 (628)
+.+||+++++.+.+++.|++.+ ++++.+.++.||+...++++|++++|+.|++|+++|+++..+||+|+|+|+|+||||
T Consensus 6 ~~~il~~e~~~~~~~~~l~~~g~~v~~~~~~~~eel~~~i~~~~aviVrs~tkvtadvl~aa~~~lkvVgrag~G~dNVD 85 (406)
T KOG0068|consen 6 MRKILVAESLDQACIEILKDNGYQVEFKKNLSLEELIEKIKDCDALIVRSKTKVTADVLEAAAGGLKVVGRAGIGVDNVD 85 (406)
T ss_pred cceEEEecccchHHHHHHHhcCceEEEeccCCHHHHHHHhccCCEEEEEeCCeecHHHHHhhcCCeEEEEecccCccccC
Confidence 4489999999999999999987 899999999999999999999999999999999999966679999999999999999
Q ss_pred HhHHHhcCceEEcCCCCChhhHHHHHHHHHHHHHHchhHHHHHHHcCcccccccceeeecCCeEEEEecChhHHHHHHHH
Q 006864 169 LQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRA 248 (628)
Q Consensus 169 l~aa~~~GI~V~n~p~~~~~avAE~~l~l~L~~~R~i~~~~~~~~~g~W~~~~~~g~~l~GktiGIIGlG~IG~~vA~~l 248 (628)
+++|+++||.|+|+|.+|+.++|||+++|+++|+|++++++.+||+|+|++..+.|.+|+|||+||+|+|+||+++|+++
T Consensus 86 L~AAte~gi~Vvn~P~~Ns~saAEltigli~SLaR~i~~A~~s~k~g~wnr~~~~G~el~GKTLgvlG~GrIGseVA~r~ 165 (406)
T KOG0068|consen 86 LKAATENGILVVNTPTANSRSAAELTIGLILSLARQIGQASASMKEGKWNRVKYLGWELRGKTLGVLGLGRIGSEVAVRA 165 (406)
T ss_pred hhhHHhCCeEEEeCCCCChHHHHHHHHHHHHHHhhhcchhheeeecCceeecceeeeEEeccEEEEeecccchHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEcCCCCccccccccHHHHhcCCCCcEEEEcCCCchhcHHH
Q 006864 249 KGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEA 328 (628)
Q Consensus 249 ~~~G~~V~~~d~~~~~~~a~~~g~~~~sl~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~~vde~a 328 (628)
+++||+|++|||..+.++++..|++.++++|++..||||++|||++|+|++|+|++.|++||+|.++||++||++||+.|
T Consensus 166 k~~gm~vI~~dpi~~~~~~~a~gvq~vsl~Eil~~ADFitlH~PLtP~T~~lin~~tfA~mKkGVriIN~aRGGvVDe~A 245 (406)
T KOG0068|consen 166 KAMGMHVIGYDPITPMALAEAFGVQLVSLEEILPKADFITLHVPLTPSTEKLLNDETFAKMKKGVRIINVARGGVVDEPA 245 (406)
T ss_pred HhcCceEEeecCCCchHHHHhccceeeeHHHHHhhcCEEEEccCCCcchhhccCHHHHHHhhCCcEEEEecCCceechHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCeeEEEeeccCCCCCCC--CCccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCcccCCCC
Q 006864 329 LVRALDSGVVAQAALDVFTEEPPAK--DSKLVQHENVTVTPHLGASTKEAQEGVAIEIAEAVVGALRGELSATAINAPMV 406 (628)
Q Consensus 329 L~~aL~~g~i~ga~lDV~~~EP~~~--~~~L~~~~nvilTPHig~~T~ea~~~~~~~~~~~i~~~l~g~~~~~~vn~p~~ 406 (628)
|++||++|+++||++|||+.||+.. ++.|.++|||++|||+|++|.|||.+++.++++++.+|++| .....||+|.+
T Consensus 246 Lv~Al~sG~vaGaAlDVy~~Epp~~~~~~~Lv~hpnVi~TpHlgasT~EAq~~iaievaea~~~~~~~-~~~g~Vna~~v 324 (406)
T KOG0068|consen 246 LVRALDSGQVAGAALDVYPEEPPKNGWDSELVSHPNVIVTPHLGASTEEAQSRIAIEVAEAVSDYING-NSAGSVNAPEV 324 (406)
T ss_pred HHHHHhcCcccceeeecccCCCCccchhHHHhcCCceeecCccccchHHHHHHHHHHHHHHHHHHhcc-Cccceechhhh
Confidence 9999999999999999999999754 78999999999999999999999999999999999999999 67899999999
Q ss_pred CcccccccccHHHHHHHHhHHHHHHhcCCCCceEEEEEEeecCCCCCCCcccchHHHHHhhccccccCcccccchHhHHh
Q 006864 407 PSEVLSELAPYVVLAKKLGRLAVQLVSGGSGIKSVKLIYRSARDPDDLDTRILRAMITKGIIEPISASFINLVNADFTAK 486 (628)
Q Consensus 407 ~~~~~~~~~p~~~lAerlG~la~qL~~g~~~~~~v~i~~~Gs~a~~~~~~~~~~~a~l~GlL~~~~~~~vnlvNA~~iAk 486 (628)
..+.+++++||+.||+++||++.|++.+.+++..+..+|.+.. +.+++.+.+.+.+|+.+++.+-.+|++|+..++|
T Consensus 325 ~~~~l~~~~~~~~~a~~l~r~~~~~~~~~~~~~~~~~~~~s~~---~~d~~~l~A~i~~~~~e~i~~~~~nLvn~~~~~k 401 (406)
T KOG0068|consen 325 ALESLTELKPNIVLAEKLGRLVPGVLKGVNGVLSVHNIYKSFS---DGDIALLRADISKGIIEPIKDIYVNLVNADAKAK 401 (406)
T ss_pred hhhhhhccCchhHHHHHHhhhhHHHhcCCccceeeeehhhhcc---ccceeeeHHHHhccCcchHHHHHHHHhccchhhh
Confidence 9999999999999999999999999998777888888777643 5889999999999999999999999999999999
Q ss_pred hcCce
Q 006864 487 QKGLR 491 (628)
Q Consensus 487 e~GI~ 491 (628)
+||++
T Consensus 402 ~r~l~ 406 (406)
T KOG0068|consen 402 QRGLY 406 (406)
T ss_pred hhccC
Confidence 99974
|
|
| >PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-76 Score=645.48 Aligned_cols=393 Identities=32% Similarity=0.475 Sum_probs=351.4
Q ss_pred ccCCCCeEEEeCCCCHhHHHHhhcC-C-cEEEec-CCCHhHHHhhcCCCeEEEEcCCCCCCHHHHHhcCCcceeEEeccc
Q 006864 86 AVTPKPTILVSEKLGEAGLAILRSF-G-NVECLY-DLSPEALCEKISQCDALIVRSGTKVTRSVFEAANGKLKVVGRAGV 162 (628)
Q Consensus 86 ~~~~~~~vlv~~~l~~~~~~~l~~~-~-~v~~~~-~~~~~el~~~~~~~d~liv~~~~~v~~~~l~~~~~~Lk~I~~~g~ 162 (628)
.++.|++|++++.+.++..+.|++. . ++.... ..+++++.+.++++|++++++.+++++++++++ |+||||+++|+
T Consensus 6 ~~~~~~~ili~~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~l~~~-~~Lk~I~~~~~ 84 (409)
T PRK11790 6 LPKDKIKFLLLEGVHQSAVEVLRAAGYTNIEYHKGALDEEELIEAIKDAHFIGIRSRTQLTEEVLAAA-EKLVAIGCFCI 84 (409)
T ss_pred CCCCCeEEEEECCCCHHHHHHHHhcCCceEEECCCCCCHHHHHHHcCCCCEEEEeCCCCCCHHHHhhC-CCCeEEEECce
Confidence 3456789999999998988888765 3 554432 356788999999999999888788999999988 59999999999
Q ss_pred ccCcccHhHHHhcCceEEcCCCCChhhHHHHHHHHHHHHHHchhHHHHHHHcCcccccccceeeecCCeEEEEecChhHH
Q 006864 163 GIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGKTLAVMGFGKVGS 242 (628)
Q Consensus 163 G~D~iDl~aa~~~GI~V~n~p~~~~~avAE~~l~l~L~~~R~i~~~~~~~~~g~W~~~~~~g~~l~GktiGIIGlG~IG~ 242 (628)
|+||||+++|+++||.|+|+||+|+.+||||++++||+++|++.++++.+++|+|.+..+.|.+|.|||+||||+|+||+
T Consensus 85 G~d~id~~~~~~~gI~V~n~pg~~~~aVAE~~i~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~L~gktvGIiG~G~IG~ 164 (409)
T PRK11790 85 GTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGEIILLLRGIPEKNAKAHRGGWNKSAAGSFEVRGKTLGIVGYGHIGT 164 (409)
T ss_pred ecccccHHHHHhCCCEEEeCCCCChHHHHHHHHHHHHHHHcChHHHHHHHHcCcccccccCcccCCCCEEEEECCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999765668999999999999999999
Q ss_pred HHHHHHHcCCCEEEEECCCCChhHHHHcCCccc-CHHHHhccCCEEEEcCCCCccccccccHHHHhcCCCCcEEEEcCCC
Q 006864 243 EVARRAKGLGMNVIAHDPYAPADKARAVGVELV-SFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARG 321 (628)
Q Consensus 243 ~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~-sl~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg 321 (628)
.+|+++++|||+|++|||+... ...++..+ +|++++++||+|++|+|+|++|++|||++.|++||+|++|||+|||
T Consensus 165 ~vA~~~~~fGm~V~~~d~~~~~---~~~~~~~~~~l~ell~~sDiVslh~Plt~~T~~li~~~~l~~mk~ga~lIN~aRG 241 (409)
T PRK11790 165 QLSVLAESLGMRVYFYDIEDKL---PLGNARQVGSLEELLAQSDVVSLHVPETPSTKNMIGAEELALMKPGAILINASRG 241 (409)
T ss_pred HHHHHHHHCCCEEEEECCCccc---ccCCceecCCHHHHHhhCCEEEEcCCCChHHhhccCHHHHhcCCCCeEEEECCCC
Confidence 9999999999999999986421 11234433 8999999999999999999999999999999999999999999999
Q ss_pred chhcHHHHHHHHhCCCeeEEEeeccCCCCCCC----CCccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCC
Q 006864 322 GVIDEEALVRALDSGVVAQAALDVFTEEPPAK----DSKLVQHENVTVTPHLGASTKEAQEGVAIEIAEAVVGALRGELS 397 (628)
Q Consensus 322 ~~vde~aL~~aL~~g~i~ga~lDV~~~EP~~~----~~~L~~~~nvilTPHig~~T~ea~~~~~~~~~~~i~~~l~g~~~ 397 (628)
++||++||+++|++|+|+||+||||+.||++. ++|||.+|||++|||+|++|.|++++++..+++|+.+|++|+.+
T Consensus 242 ~~vde~aL~~aL~~g~i~gaalDVf~~EP~~~~~~~~~pL~~~~nvilTPHia~~t~ea~~~~~~~~~~nl~~~~~~~~~ 321 (409)
T PRK11790 242 TVVDIDALADALKSGHLAGAAIDVFPVEPKSNGDPFESPLRGLDNVILTPHIGGSTQEAQENIGLEVAGKLVKYSDNGST 321 (409)
T ss_pred cccCHHHHHHHHHcCCceEEEEcCCCCCCCCccccccchhhcCCCEEECCcCCCCHHHHHHHHHHHHHHHHHHHHcCCCc
Confidence 99999999999999999999999999999876 36999999999999999999999999999999999999999999
Q ss_pred CCcccCCCCCcccccccccHHHHHHHHhHHHHHHhcCCCCceEEEEEEeecCCCCCCCcccchHHHHHhhccccccCccc
Q 006864 398 ATAINAPMVPSEVLSELAPYVVLAKKLGRLAVQLVSGGSGIKSVKLIYRSARDPDDLDTRILRAMITKGIIEPISASFIN 477 (628)
Q Consensus 398 ~~~vn~p~~~~~~~~~~~p~~~lAerlG~la~qL~~g~~~~~~v~i~~~Gs~a~~~~~~~~~~~a~l~GlL~~~~~~~vn 477 (628)
.+.||.| +
T Consensus 322 ~~~vn~~---------------------------------------------------------------------~--- 329 (409)
T PRK11790 322 LSAVNFP---------------------------------------------------------------------E--- 329 (409)
T ss_pred Ccceecc---------------------------------------------------------------------c---
Confidence 9999974 0
Q ss_pred ccchHhHHhhcCceEEEEEeecCCCCCCCCceEEEEEEecccccceeeCCCcEEEEEEEEECCeeEEEEECceeEEeecC
Q 006864 478 LVNADFTAKQKGLRISEERVVADSSPEFPIDSIQVQLSNVDSKFAAAVSENGEISIEGKVKFGIPHLTRVGSFGVDASLE 557 (628)
Q Consensus 478 lvNA~~iAke~GI~i~~~~~~~~~~~~~~~ntv~v~l~~~~~~~~~~~~~~~~~~v~Gt~~gG~~~I~~Idgf~Vd~~~~ 557 (628)
+. .. +...
T Consensus 330 --------------~~---~~-------------------------------------------------------~~~~ 337 (409)
T PRK11790 330 --------------VS---LP-------------------------------------------------------EHPG 337 (409)
T ss_pred --------------cc---cC-------------------------------------------------------CCCC
Confidence 00 00 0001
Q ss_pred CcEEEEeccCCCCchhhHHhhhhcCCccccceEEeeeecCccEEEEEEeCCCCCHHHHHHHhcccCccccC
Q 006864 558 GNLILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDEEPNQDSLKEIGKVHFVARIL 628 (628)
Q Consensus 558 ~~~Llv~~~D~PGvIa~V~~iL~~~~INIa~m~v~R~~~gg~Al~~i~vD~~~~~~~l~~L~~l~~v~~v~ 628 (628)
.|.|++.|+|+||+|++|+++|++++|||++|++.|. ++.|+|+|++|+.++++++++|+++++|.+|+
T Consensus 338 ~~rlii~h~d~pG~ia~it~~l~~~~iNI~~m~~~~~--~~~A~~iie~D~~~~~~~~~~i~~i~~v~~v~ 406 (409)
T PRK11790 338 GHRLLHIHENRPGVLAAINQIFAEQGINIAAQYLQTD--GEIGYVVIDVDADYAEEALDALKAIPGTIRAR 406 (409)
T ss_pred CceEEEEeCCCCCHHHHHHHHHHhcCCCHHHheeccC--CCEEEEEEEeCCCCcHHHHHHHHcCCCeEEEE
Confidence 4677889999999999999999999999999999754 48999999999999999999999999998864
|
|
| >COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-73 Score=602.01 Aligned_cols=317 Identities=48% Similarity=0.695 Sum_probs=294.3
Q ss_pred CCCeEEEeCCCCHhHHHHhhcCC--cEEEecCCCHhHHHhhcCCCeEEEEcCCCCCCHHHHHhcCCcceeEEecccccCc
Q 006864 89 PKPTILVSEKLGEAGLAILRSFG--NVECLYDLSPEALCEKISQCDALIVRSGTKVTRSVFEAANGKLKVVGRAGVGIDN 166 (628)
Q Consensus 89 ~~~~vlv~~~l~~~~~~~l~~~~--~v~~~~~~~~~el~~~~~~~d~liv~~~~~v~~~~l~~~~~~Lk~I~~~g~G~D~ 166 (628)
.+++++.++.+.++.++.+.... ++......+.+++.+.++++|++++ +.+++++++++++ ++||+|+++|+|+||
T Consensus 2 ~~~~vl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~d~~~~-~~~~v~~~~l~~~-~~Lk~I~~~g~Gvd~ 79 (324)
T COG0111 2 MMIKVLVTDPLAPDALEELLAAYDVEVPDGPDLDEEELLEALADADALIV-SVTPVTEEVLAAA-PNLKAIGRAGAGVDN 79 (324)
T ss_pred CcceeeccCccCHHHHHHHHhccccccccccccchHHHHhhcccCcEEEE-ecCCCCHHHHhhC-CCceEEEEccccccc
Confidence 47889999999999999887642 2223345677889999999999999 8899999999998 599999999999999
Q ss_pred ccHhHHHhcCceEEcCCCCChhhHHHHHHHHHHHHHHchhHHHHHHHcCcccccccceeeecCCeEEEEecChhHHHHHH
Q 006864 167 VDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVAR 246 (628)
Q Consensus 167 iDl~aa~~~GI~V~n~p~~~~~avAE~~l~l~L~~~R~i~~~~~~~~~g~W~~~~~~g~~l~GktiGIIGlG~IG~~vA~ 246 (628)
||+++|+++||.|+|+|++|+.+||||++++||+++|+++.+++++|+|.|++..+.|.+|+|||+||||+|+||+.+|+
T Consensus 80 id~~~~~~~gi~V~nap~~na~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~~~~g~el~gkTvGIiG~G~IG~~va~ 159 (324)
T COG0111 80 IDLEAATKRGILVVNAPGGNAISVAELVLALLLALARRIPDADASQRRGEWDRKAFRGTELAGKTVGIIGLGRIGRAVAK 159 (324)
T ss_pred cCHHHHhhcCCEEEeCCCcchHHHHHHHHHHHHHHhcCchhhHHHHHcCCccccccccccccCCEEEEECCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999778899999999999999999999999
Q ss_pred HHHcCCCEEEEECCCCChhHHHHcCCc-ccCHHHHhccCCEEEEcCCCCccccccccHHHHhcCCCCcEEEEcCCCchhc
Q 006864 247 RAKGLGMNVIAHDPYAPADKARAVGVE-LVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVID 325 (628)
Q Consensus 247 ~l~~~G~~V~~~d~~~~~~~a~~~g~~-~~sl~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~~vd 325 (628)
+|++|||+|++|||+.+.+.+...++. ..+|+++|++||||++|+|+|++|++|||++.|++||+|++|||||||++||
T Consensus 160 ~l~afgm~v~~~d~~~~~~~~~~~~~~~~~~Ld~lL~~sDiv~lh~PlT~eT~g~i~~~~~a~MK~gailIN~aRG~vVd 239 (324)
T COG0111 160 RLKAFGMKVIGYDPYSPRERAGVDGVVGVDSLDELLAEADILTLHLPLTPETRGLINAEELAKMKPGAILINAARGGVVD 239 (324)
T ss_pred HHHhCCCeEEEECCCCchhhhccccceecccHHHHHhhCCEEEEcCCCCcchhcccCHHHHhhCCCCeEEEECCCcceec
Confidence 999999999999998876655555554 4579999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCeeEEEeeccCCCCCCCCCccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCcccCCC
Q 006864 326 EEALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKEAQEGVAIEIAEAVVGALRGELSATAINAPM 405 (628)
Q Consensus 326 e~aL~~aL~~g~i~ga~lDV~~~EP~~~~~~L~~~~nvilTPHig~~T~ea~~~~~~~~~~~i~~~l~g~~~~~~vn~p~ 405 (628)
++||++||++|+|+||+||||++||++.++|||++|||++|||+|++|.|++++++.++++|+.+|++|..+.+ |.|.
T Consensus 240 e~aL~~AL~~G~i~gA~lDVf~~EPl~~~~pL~~~pnV~~TPHia~~T~ea~~~~~~~~~~~i~~~l~g~~~~~--~~~~ 317 (324)
T COG0111 240 EDALLAALDSGKIAGAALDVFEEEPLPADSPLWDLPNVILTPHIGGSTDEAQERVAEIVAENIVRYLAGGPVVN--NAPE 317 (324)
T ss_pred HHHHHHHHHcCCcceEEecCCCCCCCCCCChhhcCCCeEECCcccccCHHHHHHHHHHHHHHHHHHHcCCCCCC--Cccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999888 7777
Q ss_pred CCcc
Q 006864 406 VPSE 409 (628)
Q Consensus 406 ~~~~ 409 (628)
++..
T Consensus 318 v~~~ 321 (324)
T COG0111 318 VDLE 321 (324)
T ss_pred cccc
Confidence 6654
|
|
| >PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-70 Score=580.30 Aligned_cols=312 Identities=30% Similarity=0.501 Sum_probs=288.5
Q ss_pred CCeEEEeCCCCHhHHHHhhcCCcEEEec---CCCHhHHHhhcCCCeEEEEcCCCCCCHHHHHhcCCcceeEEecccccCc
Q 006864 90 KPTILVSEKLGEAGLAILRSFGNVECLY---DLSPEALCEKISQCDALIVRSGTKVTRSVFEAANGKLKVVGRAGVGIDN 166 (628)
Q Consensus 90 ~~~vlv~~~l~~~~~~~l~~~~~v~~~~---~~~~~el~~~~~~~d~liv~~~~~v~~~~l~~~~~~Lk~I~~~g~G~D~ 166 (628)
+++||++++++++..+.|++..++.... ..+.+++.+.++++|++|+++ .++++++++++ |+||+|+++|+|+||
T Consensus 2 ~~~vl~~~~~~~~~~~~l~~~~~v~~~~~~~~~~~~~~~~~~~~ad~li~~~-~~~~~~~l~~~-p~Lk~I~~~g~G~d~ 79 (323)
T PRK15409 2 KPSVILYKALPDDLLQRLEEHFTVTQVANLSPETVEQHAAAFAEAEGLLGSG-EKVDAALLEKM-PKLRAASTISVGYDN 79 (323)
T ss_pred CceEEEeCCCCHHHHHHHHhcCcEEEcCCCCCCCHHHHHHHhcCCeEEEEcC-CCCCHHHHhhC-CCCeEEEECceeccc
Confidence 5789999999988888888766665432 235678889999999999864 58999999988 599999999999999
Q ss_pred ccHhHHHhcCceEEcCCCCChhhHHHHHHHHHHHHHHchhHHHHHHHcCccccc---ccceeeecCCeEEEEecChhHHH
Q 006864 167 VDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRS---KYVGVSLVGKTLAVMGFGKVGSE 243 (628)
Q Consensus 167 iDl~aa~~~GI~V~n~p~~~~~avAE~~l~l~L~~~R~i~~~~~~~~~g~W~~~---~~~g~~l~GktiGIIGlG~IG~~ 243 (628)
||+++|+++||.|+|+|++|+.+||||+++|||+++|++.+.++.+++|+|... .+.|.+|+|||+||||+|+||+.
T Consensus 80 id~~~~~~~gI~V~n~~~~~~~~VAE~~~~l~L~~~R~i~~~~~~~~~g~w~~~~~~~~~g~~L~gktvGIiG~G~IG~~ 159 (323)
T PRK15409 80 FDVDALTARKILLMHTPTVLTETVADTLMALVLSTARRVVEVAERVKAGEWTASIGPDWFGTDVHHKTLGIVGMGRIGMA 159 (323)
T ss_pred ccHHHHHHCCCEEEeCCCCCchHHHHHHHHHHHHHHcCHHHHHHHHHcCCCcccCccccccCCCCCCEEEEEcccHHHHH
Confidence 999999999999999999999999999999999999999999999999999743 23588999999999999999999
Q ss_pred HHHHHH-cCCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEcCCCCccccccccHHHHhcCCCCcEEEEcCCCc
Q 006864 244 VARRAK-GLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGG 322 (628)
Q Consensus 244 vA~~l~-~~G~~V~~~d~~~~~~~a~~~g~~~~sl~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~ 322 (628)
+|++++ +|||+|++|||+...+.....++++++|++++++||+|++|+|+|++|++|||++.|++||+|++|||+|||+
T Consensus 160 va~~l~~~fgm~V~~~~~~~~~~~~~~~~~~~~~l~ell~~sDvv~lh~plt~~T~~li~~~~l~~mk~ga~lIN~aRG~ 239 (323)
T PRK15409 160 LAQRAHFGFNMPILYNARRHHKEAEERFNARYCDLDTLLQESDFVCIILPLTDETHHLFGAEQFAKMKSSAIFINAGRGP 239 (323)
T ss_pred HHHHHHhcCCCEEEEECCCCchhhHHhcCcEecCHHHHHHhCCEEEEeCCCChHHhhccCHHHHhcCCCCeEEEECCCcc
Confidence 999998 9999999999986555455667788899999999999999999999999999999999999999999999999
Q ss_pred hhcHHHHHHHHhCCCeeEEEeeccCCCCCCCCCccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCccc
Q 006864 323 VIDEEALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKEAQEGVAIEIAEAVVGALRGELSATAIN 402 (628)
Q Consensus 323 ~vde~aL~~aL~~g~i~ga~lDV~~~EP~~~~~~L~~~~nvilTPHig~~T~ea~~~~~~~~~~~i~~~l~g~~~~~~vn 402 (628)
+||++||++||++|+|+||+||||+.||++.++|||++|||++|||+|++|.|++.+++..+++||.+|++|+++.+.||
T Consensus 240 vVde~AL~~AL~~g~i~gAaLDVf~~EP~~~~~pL~~~~nvilTPHia~~t~e~~~~~~~~~~~ni~~~~~g~~~~~~vn 319 (323)
T PRK15409 240 VVDENALIAALQKGEIHAAGLDVFEQEPLSVDSPLLSLPNVVAVPHIGSATHETRYNMAACAVDNLIDALQGKVEKNCVN 319 (323)
T ss_pred ccCHHHHHHHHHcCCeeEEEeecCCCCCCCCCchhhcCCCEEEcCcCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCcccC
Confidence 99999999999999999999999999999889999999999999999999999999999999999999999999999998
Q ss_pred C
Q 006864 403 A 403 (628)
Q Consensus 403 ~ 403 (628)
.
T Consensus 320 ~ 320 (323)
T PRK15409 320 P 320 (323)
T ss_pred c
Confidence 3
|
|
| >COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-69 Score=566.81 Aligned_cols=312 Identities=38% Similarity=0.600 Sum_probs=290.0
Q ss_pred CCeEEEeCCCCHhHHHHhhcCCcEEEecCC---CHhHHHhhcCCCeEEEEcCCCCCCHHHHHhcCCcceeEEecccccCc
Q 006864 90 KPTILVSEKLGEAGLAILRSFGNVECLYDL---SPEALCEKISQCDALIVRSGTKVTRSVFEAANGKLKVVGRAGVGIDN 166 (628)
Q Consensus 90 ~~~vlv~~~l~~~~~~~l~~~~~v~~~~~~---~~~el~~~~~~~d~liv~~~~~v~~~~l~~~~~~Lk~I~~~g~G~D~ 166 (628)
|++++.+.+++++..+.+.+.+++...... .. ++.+.++++|++++...+++++++++++ |+||+|+..|+||||
T Consensus 2 k~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~i~~~~l~~~-p~LKlIa~~~~G~D~ 79 (324)
T COG1052 2 KIVVLSTRKLPPEVLERLKEKFEVERYEDDLTPDT-ELAERLKDADAVITFVNDRIDAEVLEKL-PGLKLIATRSAGYDN 79 (324)
T ss_pred CcEEEecCcCCHHHHHHhhccEEEEEeccCCccch-HHHHHhcCCcEEEEcCCCCcCHHHHHhC-CCcEEEEEeccccCc
Confidence 677999999999988888877665554332 22 6788899999999987789999999998 699999999999999
Q ss_pred ccHhHHHhcCceEEcCCCCChhhHHHHHHHHHHHHHHchhHHHHHHHcCcccccc----cceeeecCCeEEEEecChhHH
Q 006864 167 VDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSK----YVGVSLVGKTLAVMGFGKVGS 242 (628)
Q Consensus 167 iDl~aa~~~GI~V~n~p~~~~~avAE~~l~l~L~~~R~i~~~~~~~~~g~W~~~~----~~g~~l~GktiGIIGlG~IG~ 242 (628)
||+++|+++||.|+|+|++++++||||+++|||++.|++.++++.+|+|+|.... ..|.+++|||+||||+|+||+
T Consensus 80 vDl~aa~~~gI~Vtnvp~~~t~sVAe~~~aLiLa~~R~~~~~~~~~r~g~w~~~~~~~~~~~~~l~gktvGIiG~GrIG~ 159 (324)
T COG1052 80 VDLEAAKERGITVTNVPGYSTEAVAEHAVALILALARRIHEGDRRVREGNWSLSGGPDPLLGFDLRGKTLGIIGLGRIGQ 159 (324)
T ss_pred ccHHHHHHCCcEEEeCCCCCchHHHHHHHHHHHHHhhchHHHHHHHhcCcccccCCcccccccCCCCCEEEEECCCHHHH
Confidence 9999999999999999999999999999999999999999999999999999864 678899999999999999999
Q ss_pred HHHHHHHcCCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEcCCCCccccccccHHHHhcCCCCcEEEEcCCCc
Q 006864 243 EVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGG 322 (628)
Q Consensus 243 ~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~sl~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~ 322 (628)
++|+++++|||+|++||++..++..+..++.+++++|++++||+|++|||+|++|+||||++.|++||+|++|||+|||+
T Consensus 160 avA~r~~~Fgm~v~y~~~~~~~~~~~~~~~~y~~l~ell~~sDii~l~~Plt~~T~hLin~~~l~~mk~ga~lVNtaRG~ 239 (324)
T COG1052 160 AVARRLKGFGMKVLYYDRSPNPEAEKELGARYVDLDELLAESDIISLHCPLTPETRHLINAEELAKMKPGAILVNTARGG 239 (324)
T ss_pred HHHHHHhcCCCEEEEECCCCChHHHhhcCceeccHHHHHHhCCEEEEeCCCChHHhhhcCHHHHHhCCCCeEEEECCCcc
Confidence 99999999999999999987655556666888899999999999999999999999999999999999999999999999
Q ss_pred hhcHHHHHHHHhCCCeeEEEeeccCCCCCCCCCccccCCc---EEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCC
Q 006864 323 VIDEEALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHEN---VTVTPHLGASTKEAQEGVAIEIAEAVVGALRGELSAT 399 (628)
Q Consensus 323 ~vde~aL~~aL~~g~i~ga~lDV~~~EP~~~~~~L~~~~n---vilTPHig~~T~ea~~~~~~~~~~~i~~~l~g~~~~~ 399 (628)
+||++||++||++|+|+|||||||+.||...++||+.++| |++|||+|+.|.|++.+|+..+++|+.+|++|+.+.+
T Consensus 240 ~VDe~ALi~AL~~g~i~gaglDV~e~Ep~~~d~~l~~l~~~~~vvltPHia~at~ea~~~m~~~~~~nl~~~~~g~~~~~ 319 (324)
T COG1052 240 LVDEQALIDALKSGKIAGAGLDVFENEPALFDHPLLRLDNFPNVVLTPHIASATEEARKAMAELALENLEAFFDGGVPPN 319 (324)
T ss_pred ccCHHHHHHHHHhCCcceEEeeecCCCCCCCChhHhhccCCCCEEEccccccccHHHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 9999999999999999999999999999877899998877 9999999999999999999999999999999999999
Q ss_pred cccC
Q 006864 400 AINA 403 (628)
Q Consensus 400 ~vn~ 403 (628)
.||.
T Consensus 320 ~v~~ 323 (324)
T COG1052 320 EVNP 323 (324)
T ss_pred CCCC
Confidence 8874
|
|
| >PRK08410 2-hydroxyacid dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-67 Score=556.39 Aligned_cols=299 Identities=29% Similarity=0.482 Sum_probs=271.9
Q ss_pred eEEEeCC--CCHhHHHHhhcCCcEEEecCCCHhHHHhhcCCCeEEEEcCCCCCCHHHHHhcCCcceeEEecccccCcccH
Q 006864 92 TILVSEK--LGEAGLAILRSFGNVECLYDLSPEALCEKISQCDALIVRSGTKVTRSVFEAANGKLKVVGRAGVGIDNVDL 169 (628)
Q Consensus 92 ~vlv~~~--l~~~~~~~l~~~~~v~~~~~~~~~el~~~~~~~d~liv~~~~~v~~~~l~~~~~~Lk~I~~~g~G~D~iDl 169 (628)
||++++. +.+..++.|++.+++......+.+++.+.+.++|+++++ .+++++++++++ |+||+|+++|+|+||||+
T Consensus 2 ki~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~-~~~~~~~~l~~~-~~Lk~I~~~~~G~d~id~ 79 (311)
T PRK08410 2 KIVILDAKTLGDKDLSVFEEFGDFQIYPTTSPEEVIERIKDANIIITN-KVVIDKEVLSQL-PNLKLICITATGTNNVDI 79 (311)
T ss_pred eEEEEecCCCChhhHHHHhhCceEEEeCCCCHHHHHHHhCCCCEEEEC-CCCCCHHHHhhC-CCCeEEEEcccccccccH
Confidence 4777765 667778888876666544334578889999999999886 468999999998 599999999999999999
Q ss_pred hHHHhcCceEEcCCCCChhhHHHHHHHHHHHHHHchhHHHHHHHcCccccccc------ceeeecCCeEEEEecChhHHH
Q 006864 170 QAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSKY------VGVSLVGKTLAVMGFGKVGSE 243 (628)
Q Consensus 170 ~aa~~~GI~V~n~p~~~~~avAE~~l~l~L~~~R~i~~~~~~~~~g~W~~~~~------~g~~l~GktiGIIGlG~IG~~ 243 (628)
++|+++||.|+|+||+|+.+||||+++|||+++|+++..++.+|+|+|.+... .+.+|+|||+||||+|+||++
T Consensus 80 ~~~~~~gI~v~n~~g~~~~~VAE~a~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~~~L~gktvGIiG~G~IG~~ 159 (311)
T PRK08410 80 EYAKKKGIAVKNVAGYSTESVAQHTFAMLLSLLGRINYYDRYVKSGEYSESPIFTHISRPLGEIKGKKWGIIGLGTIGKR 159 (311)
T ss_pred HHHHhCCCEEEcCCCCCChHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCcCCCccccCccccccCCCEEEEECCCHHHHH
Confidence 99999999999999999999999999999999999999999999999985421 257999999999999999999
Q ss_pred HHHHHHcCCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEcCCCCccccccccHHHHhcCCCCcEEEEcCCCch
Q 006864 244 VARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGV 323 (628)
Q Consensus 244 vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~sl~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~~ 323 (628)
+|+++++|||+|++|||+... ...++..++|++++++||+|++|+|+|++|++|||++.|++||||++|||+|||++
T Consensus 160 vA~~~~~fgm~V~~~d~~~~~---~~~~~~~~~l~ell~~sDvv~lh~Plt~~T~~li~~~~~~~Mk~~a~lIN~aRG~v 236 (311)
T PRK08410 160 VAKIAQAFGAKVVYYSTSGKN---KNEEYERVSLEELLKTSDIISIHAPLNEKTKNLIAYKELKLLKDGAILINVGRGGI 236 (311)
T ss_pred HHHHHhhcCCEEEEECCCccc---cccCceeecHHHHhhcCCEEEEeCCCCchhhcccCHHHHHhCCCCeEEEECCCccc
Confidence 999999999999999997532 12356678999999999999999999999999999999999999999999999999
Q ss_pred hcHHHHHHHHhCCCeeEEEeeccCCCCCCCCCccccC---CcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCC
Q 006864 324 IDEEALVRALDSGVVAQAALDVFTEEPPAKDSKLVQH---ENVTVTPHLGASTKEAQEGVAIEIAEAVVGALRGEL 396 (628)
Q Consensus 324 vde~aL~~aL~~g~i~ga~lDV~~~EP~~~~~~L~~~---~nvilTPHig~~T~ea~~~~~~~~~~~i~~~l~g~~ 396 (628)
||++||++||++|+|+ |+||||++||++.++|||.+ ||||+|||+|++|.|++.++...+++|+.+|++|+.
T Consensus 237 VDe~AL~~AL~~g~i~-AaLDV~~~EP~~~~~pL~~~~~~~NvilTPH~a~~t~e~~~~~~~~~~~nl~~~~~g~~ 311 (311)
T PRK08410 237 VNEKDLAKALDEKDIY-AGLDVLEKEPMEKNHPLLSIKNKEKLLITPHIAWASKEARKTLIEKVKENIKDFLEGGK 311 (311)
T ss_pred cCHHHHHHHHHcCCeE-EEEecCCCCCCCCCChhhccCCCCCEEECCccccCCHHHHHHHHHHHHHHHHHHHcCCC
Confidence 9999999999999999 99999999999999999986 899999999999999999999999999999999863
|
|
| >PRK13243 glyoxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-67 Score=556.27 Aligned_cols=312 Identities=38% Similarity=0.633 Sum_probs=286.9
Q ss_pred CCeEEEeCCCCHhHHHHhhcCCcEEEec---CCCHhHHHhhcCCCeEEEEcCCCCCCHHHHHhcCCcceeEEecccccCc
Q 006864 90 KPTILVSEKLGEAGLAILRSFGNVECLY---DLSPEALCEKISQCDALIVRSGTKVTRSVFEAANGKLKVVGRAGVGIDN 166 (628)
Q Consensus 90 ~~~vlv~~~l~~~~~~~l~~~~~v~~~~---~~~~~el~~~~~~~d~liv~~~~~v~~~~l~~~~~~Lk~I~~~g~G~D~ 166 (628)
|+||++++++.++..+.|++..++.... ..+.+++.+.++++|++|+++.+++++++++++ |+||||+++|+|+||
T Consensus 2 ~~kil~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~l~~~-p~Lk~I~~~~~G~d~ 80 (333)
T PRK13243 2 KPKVFITREIPENGIEMLEEHFEVEVWEDEREIPREVLLEKVRDVDALVTMLSERIDCEVFEAA-PRLRIVANYAVGYDN 80 (333)
T ss_pred CceEEEECCCCHHHHHHHhcCceEEEecCCCCCCHHHHHHHhCCCcEEEEeCCCCCCHHHHhhC-CCCeEEEecCccccc
Confidence 5889999998888888887765554332 246788889999999999987678999999988 599999999999999
Q ss_pred ccHhHHHhcCceEEcCCCCChhhHHHHHHHHHHHHHHchhHHHHHHHcCcccccc-------cceeeecCCeEEEEecCh
Q 006864 167 VDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSK-------YVGVSLVGKTLAVMGFGK 239 (628)
Q Consensus 167 iDl~aa~~~GI~V~n~p~~~~~avAE~~l~l~L~~~R~i~~~~~~~~~g~W~~~~-------~~g~~l~GktiGIIGlG~ 239 (628)
||+++|+++||.|+|+||+|+.+||||++++||+++|+++.+++.+++|.|.+.. +.|.+|+||||||||+|+
T Consensus 81 id~~~~~~~gI~v~n~~g~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~~~g~~L~gktvgIiG~G~ 160 (333)
T PRK13243 81 IDVEEATRRGIYVTNTPGVLTEATADFAWALLLATARRLVEADHFVRSGEWKRRGVAWHPLMFLGYDVYGKTIGIIGFGR 160 (333)
T ss_pred cCHHHHHHcCCEEEECCCCChHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCccccccccccccccCCCCCEEEEECcCH
Confidence 9999999999999999999999999999999999999999999999999997521 257899999999999999
Q ss_pred hHHHHHHHHHcCCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEcCCCCccccccccHHHHhcCCCCcEEEEcC
Q 006864 240 VGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVA 319 (628)
Q Consensus 240 IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~sl~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~a 319 (628)
||+.+|++|++|||+|++||++.........++...++++++++||+|++|+|++++|+++|+++.|++||+|++|||++
T Consensus 161 IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lP~t~~T~~~i~~~~~~~mk~ga~lIN~a 240 (333)
T PRK13243 161 IGQAVARRAKGFGMRILYYSRTRKPEAEKELGAEYRPLEELLRESDFVSLHVPLTKETYHMINEERLKLMKPTAILVNTA 240 (333)
T ss_pred HHHHHHHHHHHCCCEEEEECCCCChhhHHHcCCEecCHHHHHhhCCEEEEeCCCChHHhhccCHHHHhcCCCCeEEEECc
Confidence 99999999999999999999986544445567777799999999999999999999999999999999999999999999
Q ss_pred CCchhcHHHHHHHHhCCCeeEEEeeccCCCCCCCCCccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCC
Q 006864 320 RGGVIDEEALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKEAQEGVAIEIAEAVVGALRGELSAT 399 (628)
Q Consensus 320 Rg~~vde~aL~~aL~~g~i~ga~lDV~~~EP~~~~~~L~~~~nvilTPHig~~T~ea~~~~~~~~~~~i~~~l~g~~~~~ 399 (628)
||+++|++||+++|++|+|+||+||||+.||++ ++|||++|||++|||+|++|.|++.+++..+++||.+|++|+++.|
T Consensus 241 Rg~~vd~~aL~~aL~~g~i~gAaLDV~~~EP~~-~~pL~~~~nvilTPHia~~t~e~~~~~~~~~~~ni~~~~~g~~~~~ 319 (333)
T PRK13243 241 RGKVVDTKALVKALKEGWIAGAGLDVFEEEPYY-NEELFSLKNVVLAPHIGSATFEAREGMAELVAENLIAFKRGEVPPT 319 (333)
T ss_pred CchhcCHHHHHHHHHcCCeEEEEeccCCCCCCC-CchhhcCCCEEECCcCCcCHHHHHHHHHHHHHHHHHHHHcCCCCCc
Confidence 999999999999999999999999999999987 8999999999999999999999999999999999999999999989
Q ss_pred cccC
Q 006864 400 AINA 403 (628)
Q Consensus 400 ~vn~ 403 (628)
.||.
T Consensus 320 ~v~~ 323 (333)
T PRK13243 320 LVNR 323 (333)
T ss_pred ccCH
Confidence 8874
|
|
| >PRK06487 glycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-66 Score=547.10 Aligned_cols=303 Identities=30% Similarity=0.468 Sum_probs=269.8
Q ss_pred eEEEeCCC----CHhHHHHhhcC-CcEEEecCCCHhHHHhhcCCCeEEEEcCCCCCCHHHHHhcCCcceeEEecccccCc
Q 006864 92 TILVSEKL----GEAGLAILRSF-GNVECLYDLSPEALCEKISQCDALIVRSGTKVTRSVFEAANGKLKVVGRAGVGIDN 166 (628)
Q Consensus 92 ~vlv~~~l----~~~~~~~l~~~-~~v~~~~~~~~~el~~~~~~~d~liv~~~~~v~~~~l~~~~~~Lk~I~~~g~G~D~ 166 (628)
||++++.. .+...+.|++. .++.+....+.+++.+.++++|+++++ .+++++++++++ |+||||+++|+|+||
T Consensus 2 ~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~-~~~~~~~~l~~~-~~Lk~I~~~~~G~d~ 79 (317)
T PRK06487 2 RAVFLDHDSLDLGDLDLSPLEQAFDELQLHDATTPEQVAERLRGAQVAISN-KVALDAAALAAA-PQLKLILVAATGTNN 79 (317)
T ss_pred eEEEEccccCCccccchhHHHhhCCeEEEecCCCHHHHHHHhCCCeEEEEe-CCCCCHHHHhhC-CCCeEEEEcCccccc
Confidence 46666542 23445666643 455554555678899999999998875 468999999988 599999999999999
Q ss_pred ccHhHHHhcCceEEcCCCCChhhHHHHHHHHHHHHHHchhHHHHHHHcCcccccc------cceeeecCCeEEEEecChh
Q 006864 167 VDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSK------YVGVSLVGKTLAVMGFGKV 240 (628)
Q Consensus 167 iDl~aa~~~GI~V~n~p~~~~~avAE~~l~l~L~~~R~i~~~~~~~~~g~W~~~~------~~g~~l~GktiGIIGlG~I 240 (628)
||+++|+++||.|+|+||+++.+||||++++||+++|++.++++.+++|+|.+.. +.+.+|+|||+||||+|+|
T Consensus 80 id~~~~~~~gI~v~n~~g~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~~~~~l~gktvgIiG~G~I 159 (317)
T PRK06487 80 VDLAAARERGITVCNCQGYGTPSVAQHTLALLLALATRLPDYQQAVAAGRWQQSSQFCLLDFPIVELEGKTLGLLGHGEL 159 (317)
T ss_pred cCHHHHHHCCCEEEeCCCCCcchHHHHHHHHHHHHHcCHHHHHHHHHcCCCccCcccccccCcccccCCCEEEEECCCHH
Confidence 9999999999999999999999999999999999999999999999999998642 2357899999999999999
Q ss_pred HHHHHHHHHcCCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEcCCCCccccccccHHHHhcCCCCcEEEEcCC
Q 006864 241 GSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVAR 320 (628)
Q Consensus 241 G~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~sl~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aR 320 (628)
|+.+|++|++|||+|++||++.... .+..++|++++++||+|++|+|+|++|++|||++.|++||+|++|||+||
T Consensus 160 G~~vA~~l~~fgm~V~~~~~~~~~~-----~~~~~~l~ell~~sDiv~l~lPlt~~T~~li~~~~~~~mk~ga~lIN~aR 234 (317)
T PRK06487 160 GGAVARLAEAFGMRVLIGQLPGRPA-----RPDRLPLDELLPQVDALTLHCPLTEHTRHLIGARELALMKPGALLINTAR 234 (317)
T ss_pred HHHHHHHHhhCCCEEEEECCCCCcc-----cccccCHHHHHHhCCEEEECCCCChHHhcCcCHHHHhcCCCCeEEEECCC
Confidence 9999999999999999999874321 23456999999999999999999999999999999999999999999999
Q ss_pred CchhcHHHHHHHHhCCCeeEEEeeccCCCCCCCCCcccc--CCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCC
Q 006864 321 GGVIDEEALVRALDSGVVAQAALDVFTEEPPAKDSKLVQ--HENVTVTPHLGASTKEAQEGVAIEIAEAVVGALRGELSA 398 (628)
Q Consensus 321 g~~vde~aL~~aL~~g~i~ga~lDV~~~EP~~~~~~L~~--~~nvilTPHig~~T~ea~~~~~~~~~~~i~~~l~g~~~~ 398 (628)
|++||++||++||++|+|+||+||||+.||++.++|||. +|||++|||+|++|.|++++++..+++||.+|++|++.
T Consensus 235 G~vVde~AL~~AL~~g~i~gAaLDVf~~EP~~~~~pl~~~~~pnvilTPHia~~t~e~~~~~~~~~~~ni~~~~~g~~~- 313 (317)
T PRK06487 235 GGLVDEQALADALRSGHLGGAATDVLSVEPPVNGNPLLAPDIPRLIVTPHSAWGSREARQRIVGQLAENARAFFAGKPL- 313 (317)
T ss_pred ccccCHHHHHHHHHcCCeeEEEeecCCCCCCCCCCchhhcCCCCEEECCccccCCHHHHHHHHHHHHHHHHHHHcCCCC-
Confidence 999999999999999999999999999999988999995 89999999999999999999999999999999999754
Q ss_pred Cccc
Q 006864 399 TAIN 402 (628)
Q Consensus 399 ~~vn 402 (628)
+.||
T Consensus 314 ~~v~ 317 (317)
T PRK06487 314 RVVS 317 (317)
T ss_pred cCCC
Confidence 5554
|
|
| >PLN02306 hydroxypyruvate reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-65 Score=549.96 Aligned_cols=320 Identities=33% Similarity=0.424 Sum_probs=284.0
Q ss_pred cccccCCCCeEEEeCCCCHh-HHHHhhcC-CcEEEec----CCCHhHHHhhc-CCCeEEEEcCCCCCCHHHHHhcCC-cc
Q 006864 83 NVQAVTPKPTILVSEKLGEA-GLAILRSF-GNVECLY----DLSPEALCEKI-SQCDALIVRSGTKVTRSVFEAANG-KL 154 (628)
Q Consensus 83 ~~~~~~~~~~vlv~~~l~~~-~~~~l~~~-~~v~~~~----~~~~~el~~~~-~~~d~liv~~~~~v~~~~l~~~~~-~L 154 (628)
++-.+..|++|++++++.++ .++.|++. .++.... ..+.+++.+.+ .++|+++++..++++++++++++. +|
T Consensus 8 ~~~~~~~~~~v~~~~~~~~~~~~~~L~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~i~~~~l~~~~~l~l 87 (386)
T PLN02306 8 EVYNPNGKYRVVSTKPMPGTRWINLLVDQDCRVEICTEKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFSALSKAGG 87 (386)
T ss_pred EeeCCCCCceEEEeCCCCcHHHHHHHHhcCceEEecCCcCCCCCHHHHHHHhhcCCcEEEEcCCCCcCHHHHHhCCcCCc
Confidence 44556789999999999774 67888765 4664321 25788888887 579999998777899999999852 47
Q ss_pred eeEEecccccCcccHhHHHhcCceEEcCCCCChhhHHHHHHHHHHHHHHchhHHHHHHHcCccccc---ccceeeecCCe
Q 006864 155 KVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRS---KYVGVSLVGKT 231 (628)
Q Consensus 155 k~I~~~g~G~D~iDl~aa~~~GI~V~n~p~~~~~avAE~~l~l~L~~~R~i~~~~~~~~~g~W~~~---~~~g~~l~Gkt 231 (628)
|+|++.|+|+||||+++|+++||.|+|+||+++.+||||+++|||+++|+++++++.+++|+|.+. ...|.+|.|||
T Consensus 88 k~I~~~~~G~D~iD~~aa~~~gI~V~n~pg~~~~~VAE~al~liLal~R~i~~~~~~~~~g~w~~~~~~~~~g~~L~gkt 167 (386)
T PLN02306 88 KAFSNMAVGYNNVDVEAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYEGWLPHLFVGNLLKGQT 167 (386)
T ss_pred eEEEECCcccccccHHHHHHCCCEEEECCCcCHHHHHHHHHHHHHHHHhChHHHHHHHHcCCCccccccccCCcCCCCCE
Confidence 999999999999999999999999999999999999999999999999999999999999998532 23578999999
Q ss_pred EEEEecChhHHHHHHHHH-cCCCEEEEECCCCChhHH---HHcC------------Ccc-cCHHHHhccCCEEEEcCCCC
Q 006864 232 LAVMGFGKVGSEVARRAK-GLGMNVIAHDPYAPADKA---RAVG------------VEL-VSFDQALATADFISLHMPLN 294 (628)
Q Consensus 232 iGIIGlG~IG~~vA~~l~-~~G~~V~~~d~~~~~~~a---~~~g------------~~~-~sl~ell~~aDvV~l~~Plt 294 (628)
+||||+|+||+.+|++++ +|||+|++|||+...... ...+ ++. .+|++++++||+|++|+|+|
T Consensus 168 vGIiG~G~IG~~vA~~l~~~fGm~V~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~ell~~sDiV~lh~Plt 247 (386)
T PLN02306 168 VGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQSTRLEKFVTAYGQFLKANGEQPVTWKRASSMEEVLREADVISLHPVLD 247 (386)
T ss_pred EEEECCCHHHHHHHHHHHhcCCCEEEEECCCCchhhhhhhhhhcccccccccccccccccCCHHHHHhhCCEEEEeCCCC
Confidence 999999999999999985 999999999998643211 1121 122 48999999999999999999
Q ss_pred ccccccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhCCCeeEEEeeccCCCCCCCCCccccCCcEEEcCCCCCCcH
Q 006864 295 PTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTK 374 (628)
Q Consensus 295 ~~t~~li~~~~l~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~ga~lDV~~~EP~~~~~~L~~~~nvilTPHig~~T~ 374 (628)
++|++|||++.|++||+|++|||+|||++||++||++||++|+|+||+||||+.||++ +++||++|||++|||+|++|.
T Consensus 248 ~~T~~lin~~~l~~MK~ga~lIN~aRG~lVDe~AL~~AL~sg~i~gAaLDVf~~EP~~-~~~L~~~pNVilTPHiag~T~ 326 (386)
T PLN02306 248 KTTYHLINKERLALMKKEAVLVNASRGPVIDEVALVEHLKANPMFRVGLDVFEDEPYM-KPGLADMKNAVVVPHIASASK 326 (386)
T ss_pred hhhhhhcCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHhCCeeEEEEeCCCCCCCC-cchHhhCCCEEECCccccCcH
Confidence 9999999999999999999999999999999999999999999999999999999974 678999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCcccC
Q 006864 375 EAQEGVAIEIAEAVVGALRGELSATAINA 403 (628)
Q Consensus 375 ea~~~~~~~~~~~i~~~l~g~~~~~~vn~ 403 (628)
++++++...+++||.+|++|+++.|.||.
T Consensus 327 e~~~~~~~~~~~ni~~~~~g~~~~~~~~~ 355 (386)
T PLN02306 327 WTREGMATLAALNVLGKLKGYPVWGDPNR 355 (386)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCcccccc
Confidence 99999999999999999999999999993
|
|
| >PRK06932 glycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-65 Score=534.75 Aligned_cols=273 Identities=31% Similarity=0.476 Sum_probs=252.3
Q ss_pred CCCHhHHHhhcCCCeEEEEcCCCCCCHHHHHhcCCcceeEEecccccCcccHhHHHhcCceEEcCCCCChhhHHHHHHHH
Q 006864 118 DLSPEALCEKISQCDALIVRSGTKVTRSVFEAANGKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIAL 197 (628)
Q Consensus 118 ~~~~~el~~~~~~~d~liv~~~~~v~~~~l~~~~~~Lk~I~~~g~G~D~iDl~aa~~~GI~V~n~p~~~~~avAE~~l~l 197 (628)
..+++++.+.++++|++++. .+++++++++++ |+||+|+++|+|+||||+++|.++||.|+|+||+++.+||||++++
T Consensus 32 ~~~~~~~~~~~~~~d~ii~~-~~~~~~~~l~~~-~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~g~~~~~vAE~~i~l 109 (314)
T PRK06932 32 HTSAEQTIERAKDADIVITS-KVLFTRETLAQL-PKLKLIAITATGTNNVDLVAAKELGIAVKNVTGYSSTTVPEHVLGM 109 (314)
T ss_pred CCChHHHHHHhCCCcEEEEe-CCCCCHHHHhhC-cCCeEEEEecccccccCHHHHHhCCCEEEeCCCCChhHHHHHHHHH
Confidence 45688899999999998874 568999999988 5999999999999999999999999999999999999999999999
Q ss_pred HHHHHHchhHHHHHHHcCcccccc------cceeeecCCeEEEEecChhHHHHHHHHHcCCCEEEEECCCCChhHHHHcC
Q 006864 198 LASMARNVSQADASIKAGKWLRSK------YVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVG 271 (628)
Q Consensus 198 ~L~~~R~i~~~~~~~~~g~W~~~~------~~g~~l~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g 271 (628)
||++.|+++..++.+++|+|.+.. +.+.+|+|||+||||+|+||+.+|+++++|||+|++||++.... ..
T Consensus 110 ~l~~~R~~~~~~~~~~~~~W~~~~~~~~~~~~~~~l~gktvgIiG~G~IG~~va~~l~~fg~~V~~~~~~~~~~----~~ 185 (314)
T PRK06932 110 IFALKHSLMGWYRDQLSDRWATCKQFCYFDYPITDVRGSTLGVFGKGCLGTEVGRLAQALGMKVLYAEHKGASV----CR 185 (314)
T ss_pred HHHHHhChHHHHHHHHcCCCCcCccccccCCcccccCCCEEEEECCCHHHHHHHHHHhcCCCEEEEECCCcccc----cc
Confidence 999999999999999999997531 23579999999999999999999999999999999999864211 12
Q ss_pred CcccCHHHHhccCCEEEEcCCCCccccccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhCCCeeEEEeeccCCCCC
Q 006864 272 VELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEEPP 351 (628)
Q Consensus 272 ~~~~sl~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~ga~lDV~~~EP~ 351 (628)
..+.+|++++++||+|++|+|+|++|++|||++.|++||+|++|||+|||++||++||++||++|+|+||+||||+.||+
T Consensus 186 ~~~~~l~ell~~sDiv~l~~Plt~~T~~li~~~~l~~mk~ga~lIN~aRG~~Vde~AL~~aL~~g~i~gAaLDV~~~EP~ 265 (314)
T PRK06932 186 EGYTPFEEVLKQADIVTLHCPLTETTQNLINAETLALMKPTAFLINTGRGPLVDEQALLDALENGKIAGAALDVLVKEPP 265 (314)
T ss_pred cccCCHHHHHHhCCEEEEcCCCChHHhcccCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHcCCccEEEEecCCCCCC
Confidence 23568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccc----cCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCC
Q 006864 352 AKDSKLV----QHENVTVTPHLGASTKEAQEGVAIEIAEAVVGALRGEL 396 (628)
Q Consensus 352 ~~~~~L~----~~~nvilTPHig~~T~ea~~~~~~~~~~~i~~~l~g~~ 396 (628)
+.++||| ++|||++|||+|++|.|+++++...+++||.+|++|++
T Consensus 266 ~~~~pl~~~~~~~pnvilTPHia~~t~e~~~~~~~~~~~ni~~~~~~g~ 314 (314)
T PRK06932 266 EKDNPLIQAAKRLPNLLITPHIAWASDSAVTTLVNKVAQNIEEFVQQGK 314 (314)
T ss_pred CCCChhhHhhcCCCCEEECCccccCcHHHHHHHHHHHHHHHHHHHhcCC
Confidence 9999998 48999999999999999999999999999999998763
|
|
| >PLN02928 oxidoreductase family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-64 Score=534.55 Aligned_cols=309 Identities=26% Similarity=0.394 Sum_probs=274.2
Q ss_pred ccCCCCeEEEeCCCCHhH----HHHhhcCCcEEEecCCCHhHHHhhcCCCeEEEEcCCCCCCHHHHHhcCCcceeEEecc
Q 006864 86 AVTPKPTILVSEKLGEAG----LAILRSFGNVECLYDLSPEALCEKISQCDALIVRSGTKVTRSVFEAANGKLKVVGRAG 161 (628)
Q Consensus 86 ~~~~~~~vlv~~~l~~~~----~~~l~~~~~v~~~~~~~~~el~~~~~~~d~liv~~~~~v~~~~l~~~~~~Lk~I~~~g 161 (628)
..+.|||||++.+..+.. .+.++... +......+.+|+.+.++++|+++++ ..++++++++++ |+||||++.|
T Consensus 14 ~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~e~~~~~~~~d~~i~~-~~~~~~~~l~~~-~~Lk~I~~~~ 90 (347)
T PLN02928 14 SDMRPTRVLFCGPEFPASYSYTREYLQKYP-FIQVDAVAREDVPDVIANYDICVPK-MMRLDADIIARA-SQMKLIMQFG 90 (347)
T ss_pred CCCCCCEEEEECCCchhHHHHHHHHhhcCC-eeEecCCCHHHHHHHhcCCcEEEEC-CCCCCHHHHhcC-CCceEEEECC
Confidence 356688999998877653 34444333 3333345778899999999998876 458999999987 5999999999
Q ss_pred cccCcccHhHHHhcCceEEcCCCC---ChhhHHHHHHHHHHHHHHchhHHHHHHHcCcccccccceeeecCCeEEEEecC
Q 006864 162 VGIDNVDLQAATEFGCLVVNAPIA---NTVAAAEHGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGKTLAVMGFG 238 (628)
Q Consensus 162 ~G~D~iDl~aa~~~GI~V~n~p~~---~~~avAE~~l~l~L~~~R~i~~~~~~~~~g~W~~~~~~g~~l~GktiGIIGlG 238 (628)
+|+||||+++|.++||.|+|+|++ |+.+||||++++||+++|++...++.+++|.|.+ ..+.+|+|||+||||+|
T Consensus 91 ~G~d~id~~~~~~~gi~v~n~~~~~~~~~~~vAE~av~l~L~~~R~~~~~~~~~~~~~w~~--~~~~~l~gktvGIiG~G 168 (347)
T PLN02928 91 VGLEGVDVDAATKHGIKVARIPSEGTGNAASCAEMAIYLMLGLLRKQNEMQISLKARRLGE--PIGDTLFGKTVFILGYG 168 (347)
T ss_pred cccCcCcHHHHHhCCCEEEECCCCCCcChHHHHHHHHHHHHHHHhCHHHHHHHHHcCCccc--ccccCCCCCEEEEECCC
Confidence 999999999999999999999985 7899999999999999999999999999999975 35789999999999999
Q ss_pred hhHHHHHHHHHcCCCEEEEECCCCChhHHHH-------------cCCcccCHHHHhccCCEEEEcCCCCccccccccHHH
Q 006864 239 KVGSEVARRAKGLGMNVIAHDPYAPADKARA-------------VGVELVSFDQALATADFISLHMPLNPTTSKIFNDET 305 (628)
Q Consensus 239 ~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~-------------~g~~~~sl~ell~~aDvV~l~~Plt~~t~~li~~~~ 305 (628)
.||+.+|++|++|||+|++|||+........ .+....+|++++++||+|++|+|+|++|++|||++.
T Consensus 169 ~IG~~vA~~l~afG~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ell~~aDiVvl~lPlt~~T~~li~~~~ 248 (347)
T PLN02928 169 AIGIELAKRLRPFGVKLLATRRSWTSEPEDGLLIPNGDVDDLVDEKGGHEDIYEFAGEADIVVLCCTLTKETAGIVNDEF 248 (347)
T ss_pred HHHHHHHHHHhhCCCEEEEECCCCChhhhhhhccccccccccccccCcccCHHHHHhhCCEEEECCCCChHhhcccCHHH
Confidence 9999999999999999999999753322111 112456899999999999999999999999999999
Q ss_pred HhcCCCCcEEEEcCCCchhcHHHHHHHHhCCCeeEEEeeccCCCCCCCCCccccCCcEEEcCCCCCCcHHHHHHHHHHHH
Q 006864 306 FAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKEAQEGVAIEIA 385 (628)
Q Consensus 306 l~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~ga~lDV~~~EP~~~~~~L~~~~nvilTPHig~~T~ea~~~~~~~~~ 385 (628)
|++||+|++|||+|||++||++||++||++|+|+||+||||+.||+++++|||++|||++|||+|++|.+++++++..++
T Consensus 249 l~~Mk~ga~lINvaRG~lVde~AL~~AL~~g~i~gAaLDV~~~EP~~~~~pL~~~~nviiTPHia~~t~~~~~~~~~~~~ 328 (347)
T PLN02928 249 LSSMKKGALLVNIARGGLLDYDAVLAALESGHLGGLAIDVAWSEPFDPDDPILKHPNVIITPHVAGVTEYSYRSMGKIVG 328 (347)
T ss_pred HhcCCCCeEEEECCCccccCHHHHHHHHHcCCeeEEEEccCCCCCCCCCChhhcCCCEEECCcCCCChHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCCCC
Q 006864 386 EAVVGALRGELSAT 399 (628)
Q Consensus 386 ~~i~~~l~g~~~~~ 399 (628)
+|+.+|++|+++.+
T Consensus 329 ~nl~~~~~g~~~~~ 342 (347)
T PLN02928 329 DAALQLHAGRPLTG 342 (347)
T ss_pred HHHHHHHCCCCCCc
Confidence 99999999987654
|
|
| >PLN03139 formate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-63 Score=533.64 Aligned_cols=295 Identities=29% Similarity=0.400 Sum_probs=267.8
Q ss_pred hHHHHhhcCC-cEEEec--CCCHhHHHhhcCCCeEEEEcC--CCCCCHHHHHhcCCcceeEEecccccCcccHhHHHhcC
Q 006864 102 AGLAILRSFG-NVECLY--DLSPEALCEKISQCDALIVRS--GTKVTRSVFEAANGKLKVVGRAGVGIDNVDLQAATEFG 176 (628)
Q Consensus 102 ~~~~~l~~~~-~v~~~~--~~~~~el~~~~~~~d~liv~~--~~~v~~~~l~~~~~~Lk~I~~~g~G~D~iDl~aa~~~G 176 (628)
...+.|++.+ ++.... ..+.+++.+.++++|++|+.. .+++++++++++ |+||||+++|+|+||||+++|+++|
T Consensus 66 ~~~~~l~~~g~~~v~~~~~~~~~~~~~~~l~dadili~~~~~~~~~~~e~l~~a-p~LK~I~~~g~G~D~iDl~aa~~~g 144 (386)
T PLN03139 66 GIRDWLESQGHQYIVTDDKEGPDCELEKHIPDLHVLITTPFHPAYVTAERIKKA-KNLELLLTAGIGSDHIDLPAAAAAG 144 (386)
T ss_pred cHHHHHHhcCCeEEEeCCCCCCHHHHHHHhCCCeEEEEcCccCCCCCHHHHhhC-CCccEEEECCccccccCHHHHHHCC
Confidence 3455666664 544433 235678899999999999864 247999999998 5999999999999999999999999
Q ss_pred ceEEcCCCCChhhHHHHHHHHHHHHHHchhHHHHHHHcCcccccc--cceeeecCCeEEEEecChhHHHHHHHHHcCCCE
Q 006864 177 CLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSK--YVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMN 254 (628)
Q Consensus 177 I~V~n~p~~~~~avAE~~l~l~L~~~R~i~~~~~~~~~g~W~~~~--~~g~~l~GktiGIIGlG~IG~~vA~~l~~~G~~ 254 (628)
|.|+|+||+|+.+||||++++||++.|++.+.++.+++|.|.... ..+.+|.|||+||||+|+||+.+|++|++|||+
T Consensus 145 I~V~n~~g~na~sVAE~al~liL~l~R~~~~~~~~~~~g~W~~~~~~~~~~~L~gktVGIVG~G~IG~~vA~~L~afG~~ 224 (386)
T PLN03139 145 LTVAEVTGSNVVSVAEDELMRILILLRNFLPGYHQVVSGEWNVAGIAYRAYDLEGKTVGTVGAGRIGRLLLQRLKPFNCN 224 (386)
T ss_pred eEEEECCCcCcHHHHHHHHHHHHHHHcCcHHHHHHHHhCCCccccccCCCcCCCCCEEEEEeecHHHHHHHHHHHHCCCE
Confidence 999999999999999999999999999999999999999998532 357899999999999999999999999999999
Q ss_pred EEEECCCC-ChhHHHHcCCccc-CHHHHhccCCEEEEcCCCCccccccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHH
Q 006864 255 VIAHDPYA-PADKARAVGVELV-SFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRA 332 (628)
Q Consensus 255 V~~~d~~~-~~~~a~~~g~~~~-sl~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~~vde~aL~~a 332 (628)
|++||++. +.+.....|+..+ ++++++++||+|++|+|++++|+++||++.|++||+|++|||++||++||++||+++
T Consensus 225 V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~A 304 (386)
T PLN03139 225 LLYHDRLKMDPELEKETGAKFEEDLDAMLPKCDVVVINTPLTEKTRGMFNKERIAKMKKGVLIVNNARGAIMDTQAVADA 304 (386)
T ss_pred EEEECCCCcchhhHhhcCceecCCHHHHHhhCCEEEEeCCCCHHHHHHhCHHHHhhCCCCeEEEECCCCchhhHHHHHHH
Confidence 99999975 3444455677655 899999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCeeEEEeeccCCCCCCCCCccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCC
Q 006864 333 LDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKEAQEGVAIEIAEAVVGALRGELS 397 (628)
Q Consensus 333 L~~g~i~ga~lDV~~~EP~~~~~~L~~~~nvilTPHig~~T~ea~~~~~~~~~~~i~~~l~g~~~ 397 (628)
|++|+|+||++|||++||++.++|||.+||+++|||+|+.|.+++++++..+++||.+|++|++.
T Consensus 305 L~sG~l~GAaLDV~~~EPlp~d~pL~~~pNvilTPHiag~t~~~~~r~~~~~~~nl~~~~~G~~~ 369 (386)
T PLN03139 305 CSSGHIGGYGGDVWYPQPAPKDHPWRYMPNHAMTPHISGTTIDAQLRYAAGVKDMLDRYFKGEDF 369 (386)
T ss_pred HHcCCceEEEEcCCCCCCCCCCChhhcCCCeEEcccccccCHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999853
|
|
| >PRK07574 formate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-63 Score=532.04 Aligned_cols=296 Identities=29% Similarity=0.453 Sum_probs=269.6
Q ss_pred HHhhcCC-cEEEec--CCCHhHHHhhcCCCeEEEEcC--CCCCCHHHHHhcCCcceeEEecccccCcccHhHHHhcCceE
Q 006864 105 AILRSFG-NVECLY--DLSPEALCEKISQCDALIVRS--GTKVTRSVFEAANGKLKVVGRAGVGIDNVDLQAATEFGCLV 179 (628)
Q Consensus 105 ~~l~~~~-~v~~~~--~~~~~el~~~~~~~d~liv~~--~~~v~~~~l~~~~~~Lk~I~~~g~G~D~iDl~aa~~~GI~V 179 (628)
+.|++.+ ++.... ..+.+++.+.+.++|++|++. ..++++++++++ |+||||+++|+|+||||+++|+++||.|
T Consensus 62 ~~l~~~g~e~~~~~~~~~~~~~~~~~l~dadili~~~~~~~~~~~e~l~~~-p~LK~I~~~g~G~D~id~~aa~~~gI~V 140 (385)
T PRK07574 62 KFLEERGHELVVTSDKDGPDSDFEKELPDADVVISQPFWPAYLTAERIAKA-PNLKLAITAGIGSDHVDLQAASEHGITV 140 (385)
T ss_pred HHHHhcCcEEEEeCCCCCCHHHHHHHcCCCeEEEEecCCCCCCCHHHHhhC-CCCcEEEECCcccccccHHHHHHCCcEE
Confidence 5566663 554432 235688899999999999863 457999999998 5999999999999999999999999999
Q ss_pred EcCCCCChhhHHHHHHHHHHHHHHchhHHHHHHHcCcccccc--cceeeecCCeEEEEecChhHHHHHHHHHcCCCEEEE
Q 006864 180 VNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSK--YVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIA 257 (628)
Q Consensus 180 ~n~p~~~~~avAE~~l~l~L~~~R~i~~~~~~~~~g~W~~~~--~~g~~l~GktiGIIGlG~IG~~vA~~l~~~G~~V~~ 257 (628)
+|+|++|+.+||||++++||++.|++.+.++.+++|.|.+.. ..+.+|+||||||||+|+||+.+|++|++|||+|++
T Consensus 141 ~n~~g~~a~~VAE~al~l~L~l~R~~~~~~~~~~~g~W~~~~~~~~~~~L~gktVGIvG~G~IG~~vA~~l~~fG~~V~~ 220 (385)
T PRK07574 141 AEVTGSNSISVAEHVVMMILALVRNYEPSHRQAVEGGWNIADCVSRSYDLEGMTVGIVGAGRIGLAVLRRLKPFDVKLHY 220 (385)
T ss_pred EcCCCCchHHHHHHHHHHHHHHHcCHHHHHHHHHhCCCCcccccccceecCCCEEEEECCCHHHHHHHHHHHhCCCEEEE
Confidence 999999999999999999999999999999999999998643 247899999999999999999999999999999999
Q ss_pred ECCCC-ChhHHHHcCCc-ccCHHHHhccCCEEEEcCCCCccccccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhC
Q 006864 258 HDPYA-PADKARAVGVE-LVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDS 335 (628)
Q Consensus 258 ~d~~~-~~~~a~~~g~~-~~sl~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~~vde~aL~~aL~~ 335 (628)
||++. +.+.....++. ..++++++++||+|++|+|+|++|+++||++.|++||+|++|||+|||+++|++||++||++
T Consensus 221 ~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~s 300 (385)
T PRK07574 221 TDRHRLPEEVEQELGLTYHVSFDSLVSVCDVVTIHCPLHPETEHLFDADVLSRMKRGSYLVNTARGKIVDRDAVVRALES 300 (385)
T ss_pred ECCCCCchhhHhhcCceecCCHHHHhhcCCEEEEcCCCCHHHHHHhCHHHHhcCCCCcEEEECCCCchhhHHHHHHHHHh
Confidence 99986 33444456765 36899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeeEEEeeccCCCCCCCCCccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCcc
Q 006864 336 GVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKEAQEGVAIEIAEAVVGALRGELSATAI 401 (628)
Q Consensus 336 g~i~ga~lDV~~~EP~~~~~~L~~~~nvilTPHig~~T~ea~~~~~~~~~~~i~~~l~g~~~~~~v 401 (628)
|+|+||+||||++||++.++|||.+|||++|||+|++|.|++++++..+++||.+|++|+++.|.-
T Consensus 301 G~i~GAaLDV~~~EPlp~d~pL~~~pNvilTPHiag~T~e~~~~~~~~~~~ni~~~~~G~~~~~~~ 366 (385)
T PRK07574 301 GHLAGYAGDVWFPQPAPADHPWRTMPRNGMTPHISGTTLSAQARYAAGTREILECFFEGRPIRDEY 366 (385)
T ss_pred CCccEEEEecCCCCCCCCCChHHhCCCeEECCccccCcHHHHHHHHHHHHHHHHHHHcCCCCCCCc
Confidence 999999999999999999999999999999999999999999999999999999999998876643
|
|
| >PRK08605 D-lactate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-60 Score=506.05 Aligned_cols=313 Identities=26% Similarity=0.426 Sum_probs=277.0
Q ss_pred CCCCeEEEeCCCCHhHHHHhhcCCcEEE--ecCCCHhHHHhhcCCCeEEEEcCCCCCCHHHHHhcCC-cceeEEeccccc
Q 006864 88 TPKPTILVSEKLGEAGLAILRSFGNVEC--LYDLSPEALCEKISQCDALIVRSGTKVTRSVFEAANG-KLKVVGRAGVGI 164 (628)
Q Consensus 88 ~~~~~vlv~~~l~~~~~~~l~~~~~v~~--~~~~~~~el~~~~~~~d~liv~~~~~v~~~~l~~~~~-~Lk~I~~~g~G~ 164 (628)
|.|++++++++.....++.+.+..++++ ......+|+.+.+.++|++++++.++++++++++++. +||+|+++|+|+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~lk~I~~~~~G~ 80 (332)
T PRK08605 1 MTKIKIMSVRDEDAPYIKAWAEKHHVEVDLTKEALTDDNVEEVEGFDGLSLSQQIPLSEAIYKLLNELGIKQIAQRSAGF 80 (332)
T ss_pred CcEEEEEecCHHHHHHHHHHHHhcCeEEEEecCCCCHHHHHHhcCCCEEEEecCCCCCHHHHHhhhhcCceEEEEccccc
Confidence 4567889888887777877765554443 2223345667899999999998888999999999852 399999999999
Q ss_pred CcccHhHHHhcCceEEcCCCCChhhHHHHHHHHHHHHHHchhHHHHHHHcCccccc-ccceeeecCCeEEEEecChhHHH
Q 006864 165 DNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRS-KYVGVSLVGKTLAVMGFGKVGSE 243 (628)
Q Consensus 165 D~iDl~aa~~~GI~V~n~p~~~~~avAE~~l~l~L~~~R~i~~~~~~~~~g~W~~~-~~~g~~l~GktiGIIGlG~IG~~ 243 (628)
||||+++|+++||.|+|+|++++.+||||++++||+++|++...++.+++|.|... ...|.+|+|++|||||+|.||++
T Consensus 81 d~id~~~~~~~gi~v~n~~~~~~~~vAE~~~~~~l~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~g~~VgIIG~G~IG~~ 160 (332)
T PRK08605 81 DTYDLELATKYNLIISNVPSYSPESIAEFTVTQAINLVRHFNQIQTKVREHDFRWEPPILSRSIKDLKVAVIGTGRIGLA 160 (332)
T ss_pred chhhHHHHHHCCCEEEeCCCCChHHHHHHHHHHHHHHhcChHHHHHHHHhCCcccccccccceeCCCEEEEECCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999988532 24588999999999999999999
Q ss_pred HHHHH-HcCCCEEEEECCCCChhHHHHcCCccc-CHHHHhccCCEEEEcCCCCccccccccHHHHhcCCCCcEEEEcCCC
Q 006864 244 VARRA-KGLGMNVIAHDPYAPADKARAVGVELV-SFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARG 321 (628)
Q Consensus 244 vA~~l-~~~G~~V~~~d~~~~~~~a~~~g~~~~-sl~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg 321 (628)
+|++| ++|||+|++||++..... ...+... ++++++++||+|++|+|++++|+++++++.|++||+|++|||++||
T Consensus 161 vA~~L~~~~g~~V~~~d~~~~~~~--~~~~~~~~~l~ell~~aDvIvl~lP~t~~t~~li~~~~l~~mk~gailIN~sRG 238 (332)
T PRK08605 161 VAKIFAKGYGSDVVAYDPFPNAKA--ATYVDYKDTIEEAVEGADIVTLHMPATKYNHYLFNADLFKHFKKGAVFVNCARG 238 (332)
T ss_pred HHHHHHhcCCCEEEEECCCccHhH--HhhccccCCHHHHHHhCCEEEEeCCCCcchhhhcCHHHHhcCCCCcEEEECCCC
Confidence 99999 799999999999864322 1234444 8999999999999999999999999999999999999999999999
Q ss_pred chhcHHHHHHHHhCCCeeEEEeeccCCCC--CCCCC-----------ccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHH
Q 006864 322 GVIDEEALVRALDSGVVAQAALDVFTEEP--PAKDS-----------KLVQHENVTVTPHLGASTKEAQEGVAIEIAEAV 388 (628)
Q Consensus 322 ~~vde~aL~~aL~~g~i~ga~lDV~~~EP--~~~~~-----------~L~~~~nvilTPHig~~T~ea~~~~~~~~~~~i 388 (628)
.++|+++|+++|++|+|+||+||||+.|| ++.++ +||.+|||++|||+|++|.|++++++..+++|+
T Consensus 239 ~~vd~~aL~~aL~~g~i~gaalDV~~~Ep~~~~~~~~~~~~~~~~~~~L~~~~nvilTPHia~~t~e~~~~~~~~~~~n~ 318 (332)
T PRK08605 239 SLVDTKALLDALDNGLIKGAALDTYEFERPLFPSDQRGQTINDPLLESLINREDVILTPHIAFYTDAAVKNLIVDALDAT 318 (332)
T ss_pred cccCHHHHHHHHHhCCeeEEEEecccCCCCccccccccccccchhhHHHhcCCCEEECCcccccHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998 34554 499999999999999999999999999999999
Q ss_pred HHHHcCCCCCCccc
Q 006864 389 VGALRGELSATAIN 402 (628)
Q Consensus 389 ~~~l~g~~~~~~vn 402 (628)
.+|++|+...+.||
T Consensus 319 ~~~~~g~~~~~~~~ 332 (332)
T PRK08605 319 LEVLQTGTTRLRVN 332 (332)
T ss_pred HHHHcCCCCCCCcC
Confidence 99999999998876
|
|
| >PRK12480 D-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-60 Score=504.91 Aligned_cols=309 Identities=24% Similarity=0.370 Sum_probs=267.6
Q ss_pred CeEEEeCCCCH---hHHHHhhcCC-cEEEecCCCHhHHHhhcCCCeEEEEcCCCCCCHHHHHhcC-CcceeEEecccccC
Q 006864 91 PTILVSEKLGE---AGLAILRSFG-NVECLYDLSPEALCEKISQCDALIVRSGTKVTRSVFEAAN-GKLKVVGRAGVGID 165 (628)
Q Consensus 91 ~~vlv~~~l~~---~~~~~l~~~~-~v~~~~~~~~~el~~~~~~~d~liv~~~~~v~~~~l~~~~-~~Lk~I~~~g~G~D 165 (628)
+||++.+.-+. ...+.++++. ++......-.+|+.+.+.++|+++++..++++++++++++ ++||+|++.|+|+|
T Consensus 2 ~~i~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~~~~~~~~~~l~~~~~~~Lk~I~~~~~G~d 81 (330)
T PRK12480 2 TKIMFFGTRDYEKEMALNWGKKNNVEVTTSKELLSSATVDQLKDYDGVTTMQFGKLENDVYPKLESYGIKQIAQRTAGFD 81 (330)
T ss_pred cEEEEEeCcHHHHHHHHHHHHhcCeEEEEcCCCCCHHHHHHhCCCCEEEEecCCCCCHHHHHhhhhcCceEEEecccccc
Confidence 67777654432 2234455543 3433222223445889999999999766789999999985 38999999999999
Q ss_pred cccHhHHHhcCceEEcCCCCChhhHHHHHHHHHHHHHHchhHHHHHHHcCccccc-ccceeeecCCeEEEEecChhHHHH
Q 006864 166 NVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRS-KYVGVSLVGKTLAVMGFGKVGSEV 244 (628)
Q Consensus 166 ~iDl~aa~~~GI~V~n~p~~~~~avAE~~l~l~L~~~R~i~~~~~~~~~g~W~~~-~~~g~~l~GktiGIIGlG~IG~~v 244 (628)
|||+++|+++||.|+|+|++++.+||||++++||++.|+++.+++.+++|.|... ...+.+|+|++|||||+|.||+.+
T Consensus 82 ~id~~~~~~~gI~v~n~~~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~~~~~w~~~~~~~~l~g~~VgIIG~G~IG~~v 161 (330)
T PRK12480 82 MYDLDLAKKHNIVISNVPSYSPETIAEYSVSIALQLVRRFPDIERRVQAHDFTWQAEIMSKPVKNMTVAIIGTGRIGAAT 161 (330)
T ss_pred hhhHHHHHHCCCEEEeCCCCChHHHHHHHHHHHHHHHHhHHHHHHHHHhCCcccccccCccccCCCEEEEECCCHHHHHH
Confidence 9999999999999999999999999999999999999999999999999976432 245789999999999999999999
Q ss_pred HHHHHcCCCEEEEECCCCChhHHHHcCCcc-cCHHHHhccCCEEEEcCCCCccccccccHHHHhcCCCCcEEEEcCCCch
Q 006864 245 ARRAKGLGMNVIAHDPYAPADKARAVGVEL-VSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGV 323 (628)
Q Consensus 245 A~~l~~~G~~V~~~d~~~~~~~a~~~g~~~-~sl~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~~ 323 (628)
|++|++|||+|++||++...... .... .++++++++||+|++|+|++++|+++++++.|++||+|++|||++||++
T Consensus 162 A~~L~~~G~~V~~~d~~~~~~~~---~~~~~~~l~ell~~aDiVil~lP~t~~t~~li~~~~l~~mk~gavlIN~aRG~~ 238 (330)
T PRK12480 162 AKIYAGFGATITAYDAYPNKDLD---FLTYKDSVKEAIKDADIISLHVPANKESYHLFDKAMFDHVKKGAILVNAARGAV 238 (330)
T ss_pred HHHHHhCCCEEEEEeCChhHhhh---hhhccCCHHHHHhcCCEEEEeCCCcHHHHHHHhHHHHhcCCCCcEEEEcCCccc
Confidence 99999999999999987532211 1223 3899999999999999999999999999999999999999999999999
Q ss_pred hcHHHHHHHHhCCCeeEEEeeccCCCCCC-------------CCCccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHH
Q 006864 324 IDEEALVRALDSGVVAQAALDVFTEEPPA-------------KDSKLVQHENVTVTPHLGASTKEAQEGVAIEIAEAVVG 390 (628)
Q Consensus 324 vde~aL~~aL~~g~i~ga~lDV~~~EP~~-------------~~~~L~~~~nvilTPHig~~T~ea~~~~~~~~~~~i~~ 390 (628)
||++||+++|++|+|+||+||||+.||+. ..+|||++|||++|||+|++|.|+++++...+++|+.+
T Consensus 239 vd~~aL~~aL~~g~i~gaalDV~~~EP~~~~~~~~~~~~~~~~~~~L~~~~nvilTPHia~~t~~~~~~~~~~~~~n~~~ 318 (330)
T PRK12480 239 INTPDLIAAVNDGTLLGAAIDTYENEAAYFTNDWTNKDIDDKTLLELIEHERILVTPHIAFFSDEAVQNLVEGGLNAALS 318 (330)
T ss_pred cCHHHHHHHHHcCCeeEEEEeccCCCCccccccccccccCchhhHHHhcCCCEEECCcccccHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999962 12379999999999999999999999999999999999
Q ss_pred HHcCCCCCCccc
Q 006864 391 ALRGELSATAIN 402 (628)
Q Consensus 391 ~l~g~~~~~~vn 402 (628)
|++|+...+.||
T Consensus 319 ~~~~~~~~~~~~ 330 (330)
T PRK12480 319 VINTGTCETRLN 330 (330)
T ss_pred HHhCCCCcccCC
Confidence 999999998887
|
|
| >PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-57 Score=482.12 Aligned_cols=275 Identities=28% Similarity=0.422 Sum_probs=244.5
Q ss_pred CeEEEeCCCCHhHHHHhhcCCcEEEecCCCHhHHHhhcCCCeEEEEcCCCCCCHHHHHhcCCcceeEEecccccCcccHh
Q 006864 91 PTILVSEKLGEAGLAILRSFGNVECLYDLSPEALCEKISQCDALIVRSGTKVTRSVFEAANGKLKVVGRAGVGIDNVDLQ 170 (628)
Q Consensus 91 ~~vlv~~~l~~~~~~~l~~~~~v~~~~~~~~~el~~~~~~~d~liv~~~~~v~~~~l~~~~~~Lk~I~~~g~G~D~iDl~ 170 (628)
+|||+.+.++ ...+.+++.+++.+....+ ...+.++++|++++++.+++++++++ . ++||+|+++++|+||||++
T Consensus 1 mkIl~d~~~~-~~~~~~~~~~ev~~~~~~~--~~~~~l~daD~liv~s~t~v~~~ll~-~-~~Lk~I~~~~~G~D~iD~~ 75 (378)
T PRK15438 1 MKILVDENMP-YARELFSRLGEVKAVPGRP--IPVAQLADADALMVRSVTKVNESLLA-G-KPIKFVGTATAGTDHVDEA 75 (378)
T ss_pred CEEEEeCCcc-hHHHHHhhcCcEEEeCCCC--CCHHHhCCCcEEEEcCCCCCCHHHhc-C-CCCeEEEECcccccccCHH
Confidence 3788888775 6677888777877654321 11234789999999998999999996 4 5999999999999999999
Q ss_pred HHHhcCceEEcCCCCChhhHHHHHHHHHHHHHHchhHHHHHHHcCcccccccceeeecCCeEEEEecChhHHHHHHHHHc
Q 006864 171 AATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKG 250 (628)
Q Consensus 171 aa~~~GI~V~n~p~~~~~avAE~~l~l~L~~~R~i~~~~~~~~~g~W~~~~~~g~~l~GktiGIIGlG~IG~~vA~~l~~ 250 (628)
+|+++||.|+|+||+|+.+||||++++||++.|+ .|.+|.|||+||||+|+||+.+|++|++
T Consensus 76 ~~~~~gI~v~napg~na~aVAE~~~~~lL~l~r~------------------~g~~L~gktvGIIG~G~IG~~vA~~l~a 137 (378)
T PRK15438 76 WLKQAGIGFSAAPGCNAIAVVEYVFSSLLMLAER------------------DGFSLHDRTVGIVGVGNVGRRLQARLEA 137 (378)
T ss_pred HHHHCCCEEEECCCcCchHHHHHHHHHHHHHhcc------------------CCCCcCCCEEEEECcCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999985 2458999999999999999999999999
Q ss_pred CCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEcCCCCcc----ccccccHHHHhcCCCCcEEEEcCCCchhcH
Q 006864 251 LGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPT----TSKIFNDETFAKMKKGVRIVNVARGGVIDE 326 (628)
Q Consensus 251 ~G~~V~~~d~~~~~~~a~~~g~~~~sl~ell~~aDvV~l~~Plt~~----t~~li~~~~l~~mk~gailIN~aRg~~vde 326 (628)
|||+|++|||..... .....+.+|++++++||+|++|+|+|++ |++|+|++.|++||+|++|||+|||++||+
T Consensus 138 ~G~~V~~~dp~~~~~---~~~~~~~~L~ell~~sDiI~lh~PLt~~g~~~T~~li~~~~l~~mk~gailIN~aRG~vVDe 214 (378)
T PRK15438 138 LGIKTLLCDPPRADR---GDEGDFRSLDELVQEADILTFHTPLFKDGPYKTLHLADEKLIRSLKPGAILINACRGAVVDN 214 (378)
T ss_pred CCCEEEEECCccccc---ccccccCCHHHHHhhCCEEEEeCCCCCCcccccccccCHHHHhcCCCCcEEEECCCchhcCH
Confidence 999999999864221 1123467999999999999999999996 999999999999999999999999999999
Q ss_pred HHHHHHHhCCCeeEEEeeccCCCCCCCCCccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHc
Q 006864 327 EALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKEAQEGVAIEIAEAVVGALR 393 (628)
Q Consensus 327 ~aL~~aL~~g~i~ga~lDV~~~EP~~~~~~L~~~~nvilTPHig~~T~ea~~~~~~~~~~~i~~~l~ 393 (628)
+||+++|++|++.||+||||++||+ .+++|+.+++ |+|||+||+|.|++.++..++++|+.+|+.
T Consensus 215 ~AL~~aL~~g~~~ga~LDV~e~EP~-~~~~Ll~~~~-i~TPHiAg~s~e~~~~~~~~~~~~l~~~~~ 279 (378)
T PRK15438 215 TALLTCLNEGQKLSVVLDVWEGEPE-LNVELLKKVD-IGTPHIAGYTLEGKARGTTQVFEAYSKFIG 279 (378)
T ss_pred HHHHHHHHhCCCcEEEEecCCCCCC-CchhhhhcCC-EECCccCcCcHHHHHHHHHHHHHHHHHHHc
Confidence 9999999999999999999999997 5778988776 999999999999999999999999999994
|
|
| >KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-57 Score=471.07 Aligned_cols=282 Identities=33% Similarity=0.514 Sum_probs=255.4
Q ss_pred CHhHHHhhcCCCeEEEEcC-CCCCCHHHHHhcCCcceeEEecccccCcccHhHHHhcCceEEcCCCCChhhHHHHHHHHH
Q 006864 120 SPEALCEKISQCDALIVRS-GTKVTRSVFEAANGKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALL 198 (628)
Q Consensus 120 ~~~el~~~~~~~d~liv~~-~~~v~~~~l~~~~~~Lk~I~~~g~G~D~iDl~aa~~~GI~V~n~p~~~~~avAE~~l~l~ 198 (628)
+..+....+.++...+... ...++.+++.+..|+||+|+.+|+|+||||+++|++|||.|+|+|+.++++|||++++++
T Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~p~lK~i~t~~vG~D~vDl~a~~krgI~V~nvp~~~~~~vAd~~~~li 129 (336)
T KOG0069|consen 50 IKTDFLKRIADSRIAISVPFTGAFTKELISALSPNLKLIVTMSVGYDHVDLEAARKRGIRVANVPDVLTDDVADLAVSLL 129 (336)
T ss_pred chhhhhhhccceeeeeecccchHHhHhhhhhcCCCeeEEEEeecccchhhHHHHHhcCceEeccCCcchHHHHHHHHHHH
Confidence 3445555666665555433 235788888887679999999999999999999999999999999999999999999999
Q ss_pred HHHHHchhHHHHHHHcCccccc--ccceeeecCCeEEEEecChhHHHHHHHHHcCCCEEEEECCCC-ChhHHHHcCCccc
Q 006864 199 ASMARNVSQADASIKAGKWLRS--KYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA-PADKARAVGVELV 275 (628)
Q Consensus 199 L~~~R~i~~~~~~~~~g~W~~~--~~~g~~l~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~g~~~~ 275 (628)
|.+.|++..+++++++|+|... ...|..+.||||||+|+|+||+.+|+||++||+.+.|+.++. ..+.+.+.+.+.+
T Consensus 130 l~~~R~~~~g~~~~~~g~w~~~~~~~~g~~~~gK~vgilG~G~IG~~ia~rL~~Fg~~i~y~~r~~~~~~~~~~~~~~~~ 209 (336)
T KOG0069|consen 130 LALLRRFSEGNEMVRNGGWGWAGGWPLGYDLEGKTVGILGLGRIGKAIAKRLKPFGCVILYHSRTQLPPEEAYEYYAEFV 209 (336)
T ss_pred HHHHhhhhhhhhhhhcCCccccCCccccccccCCEEEEecCcHHHHHHHHhhhhccceeeeecccCCchhhHHHhccccc
Confidence 9999999999999999999332 235789999999999999999999999999998888888875 4566666777788
Q ss_pred CHHHHhccCCEEEEcCCCCccccccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhCCCeeEEEeeccCCCCCCCCC
Q 006864 276 SFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEEPPAKDS 355 (628)
Q Consensus 276 sl~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~ga~lDV~~~EP~~~~~ 355 (628)
++++++++||+|++|||+|++|+|+||++.|.+||+|++|||+|||+++|++++++||++|+|+|||||||++|| +.++
T Consensus 210 d~~~~~~~sD~ivv~~pLt~~T~~liNk~~~~~mk~g~vlVN~aRG~iide~~l~eaL~sG~i~~aGlDVf~~EP-~~~~ 288 (336)
T KOG0069|consen 210 DIEELLANSDVIVVNCPLTKETRHLINKKFIEKMKDGAVLVNTARGAIIDEEALVEALKSGKIAGAGLDVFEPEP-PVDH 288 (336)
T ss_pred CHHHHHhhCCEEEEecCCCHHHHHHhhHHHHHhcCCCeEEEeccccccccHHHHHHHHhcCCcccccccccCCCC-CCCc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999 7899
Q ss_pred ccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCccc
Q 006864 356 KLVQHENVTVTPHLGASTKEAQEGVAIEIAEAVVGALRGELSATAIN 402 (628)
Q Consensus 356 ~L~~~~nvilTPHig~~T~ea~~~~~~~~~~~i~~~l~g~~~~~~vn 402 (628)
+|+.++|+++|||+|+.|.+++++|+..++.|+.+++.|++..+.++
T Consensus 289 ~l~~~dnvv~~PHigs~t~~t~~~m~~~v~~n~~~~~~g~~~~~~~~ 335 (336)
T KOG0069|consen 289 PLLTLDNVVILPHIGSATLETREKMAEIVLNNLLAFFSGKPLLTPVL 335 (336)
T ss_pred chhcccceeEecccccCcHHHHHHHHHHHHHHHHHHHccCCCCCcCC
Confidence 99999999999999999999999999999999999999998766554
|
|
| >PRK00257 erythronate-4-phosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-56 Score=477.02 Aligned_cols=284 Identities=29% Similarity=0.432 Sum_probs=250.5
Q ss_pred CeEEEeCCCCHhHHHHhhcCCcEEEecCCCHhHHHhhcCCCeEEEEcCCCCCCHHHHHhcCCcceeEEecccccCcccHh
Q 006864 91 PTILVSEKLGEAGLAILRSFGNVECLYDLSPEALCEKISQCDALIVRSGTKVTRSVFEAANGKLKVVGRAGVGIDNVDLQ 170 (628)
Q Consensus 91 ~~vlv~~~l~~~~~~~l~~~~~v~~~~~~~~~el~~~~~~~d~liv~~~~~v~~~~l~~~~~~Lk~I~~~g~G~D~iDl~ 170 (628)
+||++.+.++ ...+.+++.+++.+... .+...+.++++|++|+++.+++++++++. ++||+|+++++|+||||++
T Consensus 1 mkI~~d~~~p-~~~~~~~~~~~v~~~~~--~~~~~~~l~daD~liv~~~t~v~~~ll~~--~~Lk~I~~~~~G~D~iD~~ 75 (381)
T PRK00257 1 MKIVADENIP-LLDAFFAGFGEIRRLPG--RAFDRAAVRDADVLLVRSVTRVDRALLEG--SRVRFVGTCTIGTDHLDLD 75 (381)
T ss_pred CEEEEecCch-hHHHHHhhCCcEEEcCC--cccCHHHhCCceEEEEeCCCCCCHHHhcC--CCCeEEEECCccccccCHH
Confidence 5788888775 44666776677765432 12224567999999999988999999974 4899999999999999999
Q ss_pred HHHhcCceEEcCCCCChhhHHHHHHHHHHHHHHchhHHHHHHHcCcccccccceeeecCCeEEEEecChhHHHHHHHHHc
Q 006864 171 AATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKG 250 (628)
Q Consensus 171 aa~~~GI~V~n~p~~~~~avAE~~l~l~L~~~R~i~~~~~~~~~g~W~~~~~~g~~l~GktiGIIGlG~IG~~vA~~l~~ 250 (628)
+|+++||.|+|+||+|+.+||||++++||++.|+ .|.++.|||+||||+|+||+.+|++|++
T Consensus 76 ~~~~~gI~v~napg~na~aVAE~v~~~lL~l~r~------------------~g~~l~gktvGIIG~G~IG~~va~~l~a 137 (381)
T PRK00257 76 YFAEAGITWSSAPGCNARGVVDYVLGSLLTLAER------------------EGVDLAERTYGVVGAGHVGGRLVRVLRG 137 (381)
T ss_pred HHHHCCCEEEECCCcChHHHHHHHHHHHHHHhcc------------------cCCCcCcCEEEEECCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999884 2568999999999999999999999999
Q ss_pred CCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEcCCCCc----cccccccHHHHhcCCCCcEEEEcCCCchhcH
Q 006864 251 LGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNP----TTSKIFNDETFAKMKKGVRIVNVARGGVIDE 326 (628)
Q Consensus 251 ~G~~V~~~d~~~~~~~a~~~g~~~~sl~ell~~aDvV~l~~Plt~----~t~~li~~~~l~~mk~gailIN~aRg~~vde 326 (628)
|||+|++|||.... ...+....++++++++||+|++|+|+|+ +|++|||++.|++||+|++|||++||++||+
T Consensus 138 ~G~~V~~~Dp~~~~---~~~~~~~~~l~ell~~aDiV~lh~Plt~~g~~~T~~li~~~~l~~mk~gailIN~aRG~vVde 214 (381)
T PRK00257 138 LGWKVLVCDPPRQE---AEGDGDFVSLERILEECDVISLHTPLTKEGEHPTRHLLDEAFLASLRPGAWLINASRGAVVDN 214 (381)
T ss_pred CCCEEEEECCcccc---cccCccccCHHHHHhhCCEEEEeCcCCCCccccccccCCHHHHhcCCCCeEEEECCCCcccCH
Confidence 99999999986421 1123456799999999999999999999 5999999999999999999999999999999
Q ss_pred HHHHHHHhCCCeeEEEeeccCCCCCCCCCccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCccc
Q 006864 327 EALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKEAQEGVAIEIAEAVVGALRGELSATAIN 402 (628)
Q Consensus 327 ~aL~~aL~~g~i~ga~lDV~~~EP~~~~~~L~~~~nvilTPHig~~T~ea~~~~~~~~~~~i~~~l~g~~~~~~vn 402 (628)
+||+++|++|++.||+||||++||+ .+++|+.. |+++|||+||+|.|++.++..++++|+.+|+++.......+
T Consensus 215 ~AL~~aL~~g~i~~a~LDV~e~EP~-~~~~L~~~-nvi~TPHiAg~s~e~~~r~~~~~~~nl~~~~~~~~~~~~~~ 288 (381)
T PRK00257 215 QALREALLSGEDLDAVLDVWEGEPQ-IDLELADL-CTIATPHIAGYSLDGKARGTAQIYQALCRFFGIPARVSLTD 288 (381)
T ss_pred HHHHHHHHhCCCcEEEEeCCCCCCC-CChhhhhC-CEEEcCccccCCHHHHHHHHHHHHHHHHHHHcCCCccchhc
Confidence 9999999999999999999999996 57889885 99999999999999999999999999999999887655544
|
|
| >PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-56 Score=466.77 Aligned_cols=267 Identities=22% Similarity=0.283 Sum_probs=236.2
Q ss_pred cCCCeEEEEcCCCCCCHHHHHhcCCcceeEEecccccCcccHhH-----HHhcCceEEcCCC-CChhhHHHHHHHHHHHH
Q 006864 128 ISQCDALIVRSGTKVTRSVFEAANGKLKVVGRAGVGIDNVDLQA-----ATEFGCLVVNAPI-ANTVAAAEHGIALLASM 201 (628)
Q Consensus 128 ~~~~d~liv~~~~~v~~~~l~~~~~~Lk~I~~~g~G~D~iDl~a-----a~~~GI~V~n~p~-~~~~avAE~~l~l~L~~ 201 (628)
..++|+++++.. +.++++ . ++||||++.|+|+|++|..+ +..+||.|+|+++ +++.+||||++++||++
T Consensus 36 ~~~a~~~~~~~~---~~~~l~-~-~~Lk~I~~~~aG~d~i~~~~~~~~~~~~~~i~v~~~~~~~~~~~vAE~~l~~~L~~ 110 (312)
T PRK15469 36 NDPADYALVWHP---PVEMLA-G-RDLKAVFALGAGVDSILSKLQAHPEMLDPSVPLFRLEDTGMGEQMQEYAVSQVLHW 110 (312)
T ss_pred CccCeEEEEeCC---ChHHhc-c-CCceEEEEcccccchhhhhhccccccCCCCceEEEecCCcccHHHHHHHHHHHHHH
Confidence 478999998652 467775 4 59999999999999998332 3458999999975 68999999999999999
Q ss_pred HHchhHHHHHHHcCcccccccceeeecCCeEEEEecChhHHHHHHHHHcCCCEEEEECCCCChhHHHHcCCcccCHHHHh
Q 006864 202 ARNVSQADASIKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQAL 281 (628)
Q Consensus 202 ~R~i~~~~~~~~~g~W~~~~~~g~~l~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~sl~ell 281 (628)
+|++++..+.+++|.|.+ ..+.+++|||+||||+|.||+.+|++|++|||+|++||++.........-....++++++
T Consensus 111 ~r~~~~~~~~~~~~~w~~--~~~~~l~g~tvgIvG~G~IG~~vA~~l~afG~~V~~~~~~~~~~~~~~~~~~~~~l~e~l 188 (312)
T PRK15469 111 FRRFDDYQALQNSSHWQP--LPEYHREDFTIGILGAGVLGSKVAQSLQTWGFPLRCWSRSRKSWPGVQSFAGREELSAFL 188 (312)
T ss_pred HcChHHHHHHHHhCCcCC--CCCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCCCCCceeecccccHHHHH
Confidence 999999999999999975 345689999999999999999999999999999999998653211000011245899999
Q ss_pred ccCCEEEEcCCCCccccccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhCCCeeEEEeeccCCCCCCCCCccccCC
Q 006864 282 ATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHE 361 (628)
Q Consensus 282 ~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~ga~lDV~~~EP~~~~~~L~~~~ 361 (628)
++||+|++|+|+|++|+++||++.|++||+|++|||+|||++||++||++||++|+|+||+||||+.||++.++|||.+|
T Consensus 189 ~~aDvvv~~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~vVde~aL~~aL~~g~i~gaalDVf~~EPl~~~~pl~~~~ 268 (312)
T PRK15469 189 SQTRVLINLLPNTPETVGIINQQLLEQLPDGAYLLNLARGVHVVEDDLLAALDSGKVKGAMLDVFSREPLPPESPLWQHP 268 (312)
T ss_pred hcCCEEEECCCCCHHHHHHhHHHHHhcCCCCcEEEECCCccccCHHHHHHHHhcCCeeeEEecCCCCCCCCCCChhhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCcccC
Q 006864 362 NVTVTPHLGASTKEAQEGVAIEIAEAVVGALRGELSATAINA 403 (628)
Q Consensus 362 nvilTPHig~~T~ea~~~~~~~~~~~i~~~l~g~~~~~~vn~ 403 (628)
||++|||+|++|.++ ++...+++|+.+|++|+++.|.|+.
T Consensus 269 nvi~TPHiag~t~~~--~~~~~~~~n~~~~~~g~~~~~~V~~ 308 (312)
T PRK15469 269 RVAITPHVAAVTRPA--EAVEYISRTIAQLEKGERVCGQVDR 308 (312)
T ss_pred CeEECCcCCCCcCHH--HHHHHHHHHHHHHHcCCCCcccCCc
Confidence 999999999999885 4778889999999999999998874
|
|
| >PRK06436 glycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-55 Score=459.27 Aligned_cols=283 Identities=25% Similarity=0.407 Sum_probs=245.4
Q ss_pred eEEEeCCCCHhHHHHhhcC---CcEEEecCCCHhHHHhhcCCCeEEEEcCCCCCCHHHHHhcCCcceeEEecccccCccc
Q 006864 92 TILVSEKLGEAGLAILRSF---GNVECLYDLSPEALCEKISQCDALIVRSGTKVTRSVFEAANGKLKVVGRAGVGIDNVD 168 (628)
Q Consensus 92 ~vlv~~~l~~~~~~~l~~~---~~v~~~~~~~~~el~~~~~~~d~liv~~~~~v~~~~l~~~~~~Lk~I~~~g~G~D~iD 168 (628)
++++..++.+...+.+.+. .++... ....++|++++++. . ..+ ++||||+++|+|+||||
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~a~~~~~~~~------~-~~~-~~Lk~I~~~~aG~D~id 64 (303)
T PRK06436 2 NVYVNFPMSKKLLEICRDILDLDDVHWY---------PDYYDAEAILIKGR------Y-VPG-KKTKMIQSLSAGVDHID 64 (303)
T ss_pred eEEEEccCCHHHHHHHHhhcccceeEec---------cccCCCCEEEecCC------c-CCC-CCeEEEEECCcccCccc
Confidence 3566678888877765542 233221 12568898876542 1 123 58999999999999999
Q ss_pred HhHHHhcCceEEcCCCCChhhHHHHHHHHHHHHHHchhHHHHHHHcCcccccccceeeecCCeEEEEecChhHHHHHHHH
Q 006864 169 LQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRA 248 (628)
Q Consensus 169 l~aa~~~GI~V~n~p~~~~~avAE~~l~l~L~~~R~i~~~~~~~~~g~W~~~~~~g~~l~GktiGIIGlG~IG~~vA~~l 248 (628)
+++|+++||.+.|. |+++.+||||++++||+++|++++.++.+++|+|.+. .+.+|+|||+||||+|+||+++|+++
T Consensus 65 ~~~~~~~~i~~~~~-g~~~~~VAE~~l~l~L~l~R~i~~~~~~~~~g~w~~~--~~~~L~gktvgIiG~G~IG~~vA~~l 141 (303)
T PRK06436 65 VSGIPENVVLCSNA-GAYSISVAEHAFALLLAWAKNICENNYNMKNGNFKQS--PTKLLYNKSLGILGYGGIGRRVALLA 141 (303)
T ss_pred HHHHHhCCeEEEcC-CCCcHHHHHHHHHHHHHHHcChHHHHHHHHcCCCCCC--CCCCCCCCEEEEECcCHHHHHHHHHH
Confidence 99999998888775 8899999999999999999999999999999999863 46899999999999999999999999
Q ss_pred HcCCCEEEEECCCCChhHHHHcCC--cccCHHHHhccCCEEEEcCCCCccccccccHHHHhcCCCCcEEEEcCCCchhcH
Q 006864 249 KGLGMNVIAHDPYAPADKARAVGV--ELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDE 326 (628)
Q Consensus 249 ~~~G~~V~~~d~~~~~~~a~~~g~--~~~sl~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~~vde 326 (628)
++|||+|++|||+.... ++ ...++++++++||+|++|+|++++|+++|+++.|++||+|++|||++||+++|+
T Consensus 142 ~afG~~V~~~~r~~~~~-----~~~~~~~~l~ell~~aDiv~~~lp~t~~T~~li~~~~l~~mk~ga~lIN~sRG~~vd~ 216 (303)
T PRK06436 142 KAFGMNIYAYTRSYVND-----GISSIYMEPEDIMKKSDFVLISLPLTDETRGMINSKMLSLFRKGLAIINVARADVVDK 216 (303)
T ss_pred HHCCCEEEEECCCCccc-----CcccccCCHHHHHhhCCEEEECCCCCchhhcCcCHHHHhcCCCCeEEEECCCccccCH
Confidence 99999999999875321 22 245899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCeeEEEeeccCCCCCCCCCccccCCcEEEcCCCC-CCcHHHHHHHHHHHHHHHHHHHcCCCCCCcccC
Q 006864 327 EALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLG-ASTKEAQEGVAIEIAEAVVGALRGELSATAINA 403 (628)
Q Consensus 327 ~aL~~aL~~g~i~ga~lDV~~~EP~~~~~~L~~~~nvilTPHig-~~T~ea~~~~~~~~~~~i~~~l~g~~~~~~vn~ 403 (628)
+||+++|++|++.||+||||+.||++.++ .+||+++|||++ +.|.|+++++...+++|+.+|++|++ .|.||.
T Consensus 217 ~aL~~aL~~g~i~~a~lDV~~~EP~~~~~---~~~nviiTPHi~g~~t~e~~~~~~~~~~~ni~~~~~g~~-~~~V~~ 290 (303)
T PRK06436 217 NDMLNFLRNHNDKYYLSDVWWNEPIITET---NPDNVILSPHVAGGMSGEIMQPAVALAFENIKNFFEGKP-KNIVRK 290 (303)
T ss_pred HHHHHHHHcCCceEEEEccCCCCCCCccC---CCCCEEECCccccccCHHHHHHHHHHHHHHHHHHHcCCC-CceEch
Confidence 99999999999999999999999987665 689999999975 58999999999999999999999986 677764
|
|
| >PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-46 Score=366.08 Aligned_cols=176 Identities=46% Similarity=0.759 Sum_probs=159.5
Q ss_pred HHHHHHHHHchhHHHHHHHcCcc-cccccceeeecCCeEEEEecChhHHHHHHHHHcCCCEEEEECCCCChhH-HHHcCC
Q 006864 195 IALLASMARNVSQADASIKAGKW-LRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADK-ARAVGV 272 (628)
Q Consensus 195 l~l~L~~~R~i~~~~~~~~~g~W-~~~~~~g~~l~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~-a~~~g~ 272 (628)
++|||++.|+++++++.+++|.| ......+.+++|+|+||||+|+||+.+|++|++|||+|++|||+..... +...++
T Consensus 1 i~l~L~~~R~~~~~~~~~~~~~W~~~~~~~~~~l~g~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~~~~~ 80 (178)
T PF02826_consen 1 IALMLALLRRLPEYHEAQRNGEWASRERFPGRELRGKTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPKPEEGADEFGV 80 (178)
T ss_dssp HHHHHHHHTTHHHHHHHHHTTBHHHHTTTTBS-STTSEEEEESTSHHHHHHHHHHHHTT-EEEEEESSCHHHHHHHHTTE
T ss_pred ChHHHHHHhCHHHHHHHHHcCCCCCCcCCCccccCCCEEEEEEEcCCcCeEeeeeecCCceeEEecccCChhhhcccccc
Confidence 58999999999999999999999 3345678999999999999999999999999999999999999985544 566777
Q ss_pred cccCHHHHhccCCEEEEcCCCCccccccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhCCCeeEEEeeccCCCCCC
Q 006864 273 ELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEEPPA 352 (628)
Q Consensus 273 ~~~sl~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~ga~lDV~~~EP~~ 352 (628)
...++++++++||+|++|+|+|++|+++||++.|++||+|++|||+|||++||++||+++|++|++.||+||||+.||++
T Consensus 81 ~~~~l~ell~~aDiv~~~~plt~~T~~li~~~~l~~mk~ga~lvN~aRG~~vde~aL~~aL~~g~i~ga~lDV~~~EP~~ 160 (178)
T PF02826_consen 81 EYVSLDELLAQADIVSLHLPLTPETRGLINAEFLAKMKPGAVLVNVARGELVDEDALLDALESGKIAGAALDVFEPEPLP 160 (178)
T ss_dssp EESSHHHHHHH-SEEEE-SSSSTTTTTSBSHHHHHTSTTTEEEEESSSGGGB-HHHHHHHHHTTSEEEEEESS-SSSSSS
T ss_pred eeeehhhhcchhhhhhhhhccccccceeeeeeeeeccccceEEEeccchhhhhhhHHHHHHhhccCceEEEECCCCCCCC
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccccCCcEEEcCCCC
Q 006864 353 KDSKLVQHENVTVTPHLG 370 (628)
Q Consensus 353 ~~~~L~~~~nvilTPHig 370 (628)
.++|||++||+++|||+|
T Consensus 161 ~~~~l~~~~nvi~TPH~a 178 (178)
T PF02826_consen 161 ADSPLWDLPNVILTPHIA 178 (178)
T ss_dssp TTHHHHTSTTEEEESS-T
T ss_pred CCChHHcCCCEEEeCccC
Confidence 899999999999999986
|
All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A .... |
| >TIGR00719 sda_beta L-serine dehydratase, iron-sulfur-dependent, beta subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-40 Score=329.72 Aligned_cols=186 Identities=17% Similarity=0.199 Sum_probs=172.9
Q ss_pred HHHHHHHHhHHHHHHhcCCCCceEEEEEEeecCCCCCCCcccchHHHHHhhccccccCcccccchHhHHhhcCceEEEEE
Q 006864 417 YVVLAKKLGRLAVQLVSGGSGIKSVKLIYRSARDPDDLDTRILRAMITKGIIEPISASFINLVNADFTAKQKGLRISEER 496 (628)
Q Consensus 417 ~~~lAerlG~la~qL~~g~~~~~~v~i~~~Gs~a~~~~~~~~~~~a~l~GlL~~~~~~~vnlvNA~~iAke~GI~i~~~~ 496 (628)
+-.||+|||++++||+++ .+++++++|+|+++ .++++|++++|+++|||++..+ ++|++||+.+|||+||++.|.+
T Consensus 21 ht~laerlG~l~~ql~~~--~~~~I~i~~~Gsla-~t~~~~~~~~A~l~GlL~~~~~-~vn~vNA~~iAkerGI~v~~~~ 96 (208)
T TIGR00719 21 HTAGAAKIANVARSIFGN--EPEQIEFQFHGSFA-ETFKGHGTDRAIIGGILDFDPD-DDRIKTAFEIAEAAGIDIEFRT 96 (208)
T ss_pred HHHHHHHHHHHHHHHhcC--CCcEEEEEEEeeec-ccCCCchHHHHHHhhhcCCCCC-chHHHHHHhhhhhcCceEEEEE
Confidence 789999999999999988 89999999999998 7799999999999999988777 5999999999999999999987
Q ss_pred eecCCCCC-CCCceEEEEEEecccccceeeCCCcEEEEEEEEEC-CeeEEEEECceeEEeecCCcEEEEeccCCCCchhh
Q 006864 497 VVADSSPE-FPIDSIQVQLSNVDSKFAAAVSENGEISIEGKVKF-GIPHLTRVGSFGVDASLEGNLILCRQVDQPGMIGK 574 (628)
Q Consensus 497 ~~~~~~~~-~~~ntv~v~l~~~~~~~~~~~~~~~~~~v~Gt~~g-G~~~I~~Idgf~Vd~~~~~~~Llv~~~D~PGvIa~ 574 (628)
.+. +. .|+|+++++++ +.++..+++.|+|+| |.+||++||||+||+.|++|+|++.|.|+||+|++
T Consensus 97 ~~~---~~~~~~n~v~i~v~---------~~~g~~~~v~Gts~ggg~~riv~idg~~vd~~~~g~~L~~~~~D~PG~Ig~ 164 (208)
T TIGR00719 97 EDA---GDNVHPNSAKITFS---------DEKGEEEELIGISIGGGAIEITEINGFAIEFRGEHPAILLEHNDKFGTIAG 164 (208)
T ss_pred CCC---CCCCCCCeEEEEEE---------cCCCCEEEEEEEEeCCCeEEEEEECCEEEEecCCccEEEEEeCCCCChHHH
Confidence 642 23 69999999997 234444899999997 79999999999999999999999999999999999
Q ss_pred HHhhhhcCCccccceEEeeeecCccEEEEEEeCCCCCHHHHHHH
Q 006864 575 VGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDEEPNQDSLKEI 618 (628)
Q Consensus 575 V~~iL~~~~INIa~m~v~R~~~gg~Al~~i~vD~~~~~~~l~~L 618 (628)
|+++|++++|||++|+++|..+|++|+|+|++|+++|+++|++|
T Consensus 165 vg~~Lg~~~iNIa~m~v~r~~~g~~Ai~vl~vD~~v~~~vl~~i 208 (208)
T TIGR00719 165 VANLLAGFEINIEHLETAKKDIGNIALLTIEIDKNIDDHIKDAI 208 (208)
T ss_pred HHHHHHhCCccEEEEEEEecCCCCEEEEEEEeCCCCCHHHHhhC
Confidence 99999999999999999999999999999999999999999975
|
This family of enzymes is not homologous to the pyridoxal phosphate-dependent threonine deaminases and eukaryotic serine deaminases. |
| >KOG0067 consensus Transcription factor CtBP [Transcription] | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.7e-32 Score=278.90 Aligned_cols=293 Identities=29% Similarity=0.450 Sum_probs=252.5
Q ss_pred hhcCCcEEEecCCCHhHHHhhc-CCCeEEEEcCCCCCCHHHHHhcCCcceeEEecccccCcccHhHHHhcCceEEcCCCC
Q 006864 107 LRSFGNVECLYDLSPEALCEKI-SQCDALIVRSGTKVTRSVFEAANGKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIA 185 (628)
Q Consensus 107 l~~~~~v~~~~~~~~~el~~~~-~~~d~liv~~~~~v~~~~l~~~~~~Lk~I~~~g~G~D~iDl~aa~~~GI~V~n~p~~ 185 (628)
|+....+-++...+..|+.+++ .++-+-+......++++-+++.+ -||+|.+.|.|+||+|+.+|.+.||.|||.|+.
T Consensus 49 lk~~atvafcdaqstqeIhekvLneavgam~yh~i~l~reDlEkfk-alRv~~rig~g~dn~dikaAseL~iavC~ip~~ 127 (435)
T KOG0067|consen 49 LKDLATVAFCDAQSTQEIHEKVLNEAVGAMMYHTITLPREDLEKFK-ALRVIVRIGSGYDNIDIKAASELGIAVCNIPSD 127 (435)
T ss_pred hhcchheeeecccchHHHHHHHHHHhhhcceeeecccchhhHHHhh-hhceeeeeccccchhhhhhhhhheeeeecccch
Confidence 5555556666666777776533 34433333344579999999986 799999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHHHHHHHchhHHHHHHHcCccccccc-------ceeeecCCeEEEEecChhHHHHHHHHHcCCCEEEEE
Q 006864 186 NTVAAAEHGIALLASMARNVSQADASIKAGKWLRSKY-------VGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAH 258 (628)
Q Consensus 186 ~~~avAE~~l~l~L~~~R~i~~~~~~~~~g~W~~~~~-------~g~~l~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~ 258 (628)
.-+.+|+-++.++|.++|+-....+.+++|.|..... ....++|.++|++|+|+.|+.++.++++||..|+.|
T Consensus 128 ~Ve~~a~stl~hIl~l~rrntw~cq~l~eg~~~q~~~q~~e~a~g~~~~~G~~~g~~g~gr~g~av~~~A~afg~~~ify 207 (435)
T KOG0067|consen 128 AVEETADSTLCHILNLYRRNTWLCQALREGTCTQGLEQVREAACGLARIRGPTLGLIGFGRTGQAVALRAKAFGFVVIFY 207 (435)
T ss_pred hHHHHHHHHHHHHHhhhcccchhhhhhcccceeechhhhhhhhhccccccccceeeeccccccceehhhhhcccceeeee
Confidence 9999999999999999999999999999999975321 234689999999999999999999999999999999
Q ss_pred CCCCChhHHHHcCCccc-CHHHHhccCCEEEEcCCCCccccccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhCCC
Q 006864 259 DPYAPADKARAVGVELV-SFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGV 337 (628)
Q Consensus 259 d~~~~~~~a~~~g~~~~-sl~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~~vde~aL~~aL~~g~ 337 (628)
|||...-..+.+|.+.+ ++++++.++|.+++||-+++.+.++||.-.+.+|+.|++++|++||+++|+++|.++|+.|+
T Consensus 208 dp~~~~g~~~~lg~~rVytlqd~~~~sd~~S~hc~~~~~~h~lin~~tikqm~qGaflvnta~gglvdekaLaqaLk~G~ 287 (435)
T KOG0067|consen 208 DPYLIDGIDKSLGLQRVYTLQDLLYQSDCVSLHCNLNEHNHELINDFTIKQMRQGAFLVNTARGGLVDEKALAQALKSGR 287 (435)
T ss_pred cchhhhhhhhhcccceecccchhhhhccceeeecccCcccccccccccceeecccceEeeecccccCChHHHHhhhccCc
Confidence 99987766777888766 89999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEeeccCCCCC-CCCCccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCC---CCcccCCCCC
Q 006864 338 VAQAALDVFTEEPP-AKDSKLVQHENVTVTPHLGASTKEAQEGVAIEIAEAVVGALRGELS---ATAINAPMVP 407 (628)
Q Consensus 338 i~ga~lDV~~~EP~-~~~~~L~~~~nvilTPHig~~T~ea~~~~~~~~~~~i~~~l~g~~~---~~~vn~p~~~ 407 (628)
+.+++ |- -...||.+.||.|+|||.+++++.+..++...++..+...+.|..+ +++||..+..
T Consensus 288 i~~aa-------~~~~~~~~l~d~pn~ic~~~ta~~~e~~~~e~re~aa~eiR~ai~g~ip~~l~~cvnkE~~~ 354 (435)
T KOG0067|consen 288 IRGAA-------PRSFKQGPLKDAPNLICTPHTAWYSEAASVELREVAALEIRRAITGRIPDSLRNCVNKEFSP 354 (435)
T ss_pred eeccc-------CcccccccccCCCCCCCCcccchhhHHHHHHHHHHHhhhhhhccCCCCchhHHHHHhhhhcc
Confidence 99887 21 1356888999999999999999999999999999999999988764 5667764433
|
|
| >PF00389 2-Hacid_dh: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; InterPro: IPR006139 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.4e-22 Score=184.10 Aligned_cols=101 Identities=43% Similarity=0.549 Sum_probs=91.4
Q ss_pred EEEeCCCCHhHHHHhhcCCcEEEecCCCHhHHHhhcCCCeEEEEcCCCCCCHHHHHhcCCcceeEEecccccCcccHhHH
Q 006864 93 ILVSEKLGEAGLAILRSFGNVECLYDLSPEALCEKISQCDALIVRSGTKVTRSVFEAANGKLKVVGRAGVGIDNVDLQAA 172 (628)
Q Consensus 93 vlv~~~l~~~~~~~l~~~~~v~~~~~~~~~el~~~~~~~d~liv~~~~~v~~~~l~~~~~~Lk~I~~~g~G~D~iDl~aa 172 (628)
||++++++++.+++|++..++.+....+.+++.+.++++|++++++.+++++++++++ |+||||++.|+|+||||+++|
T Consensus 1 ili~~~~~~~~~~~l~~~~~v~~~~~~~~~~~~~~l~~~d~ii~~~~~~~~~~~l~~~-~~Lk~I~~~~~G~d~id~~~a 79 (133)
T PF00389_consen 1 ILITDPLPDEEIERLEEGFEVEFCDSPSEEELAERLKDADAIIVGSGTPLTAEVLEAA-PNLKLISTAGAGVDNIDLEAA 79 (133)
T ss_dssp EEESSS-SHHHHHHHHHTSEEEEESSSSHHHHHHHHTTESEEEESTTSTBSHHHHHHH-TT-SEEEESSSSCTTB-HHHH
T ss_pred eEEeccCCHHHHHHHHCCceEEEeCCCCHHHHHHHhCCCeEEEEcCCCCcCHHHHhcc-ceeEEEEEcccccCcccHHHH
Confidence 7899999999999999933888888888999999999999999998777999999998 599999999999999999999
Q ss_pred HhcCceEEcCCCCChhhHHHHH
Q 006864 173 TEFGCLVVNAPIANTVAAAEHG 194 (628)
Q Consensus 173 ~~~GI~V~n~p~~~~~avAE~~ 194 (628)
+++||.|+|+||+++.+||||+
T Consensus 80 ~~~gI~V~n~~g~~~~aVAE~a 101 (133)
T PF00389_consen 80 KERGIPVTNVPGYNAEAVAEHA 101 (133)
T ss_dssp HHTTSEEEE-TTTTHHHHHHHH
T ss_pred hhCeEEEEEeCCcCCcchhccc
Confidence 9999999999999999999999
|
The catalytic domain contains a number of conserved charged residues which may play a role in the catalytic mechanism. The NAD-binding domain is described in IPR006140 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 2DLD_A 2G76_B 3DC2_B 1YGY_B 3DDN_A 3KB6_B 3K5P_A 3EVT_A 1WWK_B 1GDH_A .... |
| >PTZ00075 Adenosylhomocysteinase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=5.9e-21 Score=208.97 Aligned_cols=169 Identities=21% Similarity=0.309 Sum_probs=141.1
Q ss_pred ecccccCccc-HhHHHhcCceEEcCCCCChhhHHHHHHHHHHHHHHchhHHHHHHHcCcccccccceeeecCCeEEEEec
Q 006864 159 RAGVGIDNVD-LQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGKTLAVMGF 237 (628)
Q Consensus 159 ~~g~G~D~iD-l~aa~~~GI~V~n~p~~~~~avAE~~l~l~L~~~R~i~~~~~~~~~g~W~~~~~~g~~l~GktiGIIGl 237 (628)
-.++|+...- ++..-..||+|+|+|++++.+++|+++++++++. +..+|.+ +..+.||++||+|+
T Consensus 197 eTttGv~rl~~m~~~g~L~iPV~nv~d~~tk~~aD~~~G~~~s~~------d~~~R~~--------~~~LaGKtVgVIG~ 262 (476)
T PTZ00075 197 ETTTGVHRLYKMLKKGELLFPAINVNDSVTKSKFDNIYGCRHSLI------DGIFRAT--------DVMIAGKTVVVCGY 262 (476)
T ss_pred cchHHHHHHHHHHHCCCCCceEEEeCCcchHHHHHHHHHHHHHHH------HHHHHhc--------CCCcCCCEEEEECC
Confidence 4688887742 3333446899999999999999999999999888 3334443 45899999999999
Q ss_pred ChhHHHHHHHHHcCCCEEEEECCCCCh-hHHHHcCCcccCHHHHhccCCEEEEcCCCCccccccccHHHHhcCCCCcEEE
Q 006864 238 GKVGSEVARRAKGLGMNVIAHDPYAPA-DKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIV 316 (628)
Q Consensus 238 G~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~~g~~~~sl~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailI 316 (628)
|+||+.+|++|++|||+|+++|+.... ..+...|++.+++++++++||+|++|+ .++++|+++.|++||+|++|+
T Consensus 263 G~IGr~vA~rL~a~Ga~ViV~e~dp~~a~~A~~~G~~~~~leell~~ADIVI~at----Gt~~iI~~e~~~~MKpGAiLI 338 (476)
T PTZ00075 263 GDVGKGCAQALRGFGARVVVTEIDPICALQAAMEGYQVVTLEDVVETADIFVTAT----GNKDIITLEHMRRMKNNAIVG 338 (476)
T ss_pred CHHHHHHHHHHHHCCCEEEEEeCCchhHHHHHhcCceeccHHHHHhcCCEEEECC----CcccccCHHHHhccCCCcEEE
Confidence 999999999999999999999665422 234456888889999999999999985 478999999999999999999
Q ss_pred EcCCCchhcHHHHHHHHhCCCeeEEEeeccCCCCCC
Q 006864 317 NVARGGVIDEEALVRALDSGVVAQAALDVFTEEPPA 352 (628)
Q Consensus 317 N~aRg~~vde~aL~~aL~~g~i~ga~lDV~~~EP~~ 352 (628)
|++|+ |++.+.++|+.+. ++|+++.||..
T Consensus 339 NvGr~---d~Ei~i~aL~~~~----~vdv~evep~v 367 (476)
T PTZ00075 339 NIGHF---DNEIQVAELEAYP----GIEIVEIKPQV 367 (476)
T ss_pred EcCCC---chHHhHHHHHhcC----CceeecccCCC
Confidence 99999 7888888988754 68999999975
|
|
| >PRK06545 prephenate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.83 E-value=2e-21 Score=209.34 Aligned_cols=322 Identities=20% Similarity=0.254 Sum_probs=216.2
Q ss_pred CeEEEEecChhHHHHHHHHHcCCCEEEEECCCCChh-HHHHcCCc-----ccCHHHHhccCCEEEEcCCCCccccccccH
Q 006864 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPAD-KARAVGVE-----LVSFDQALATADFISLHMPLNPTTSKIFND 303 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~-~a~~~g~~-----~~sl~ell~~aDvV~l~~Plt~~t~~li~~ 303 (628)
++|+|||+|.||+++|+.|+..|++|.+|++..... .....+.. ..++++++++||+|++|+|.. .+..++.
T Consensus 1 ~~I~iIG~GliG~siA~~L~~~G~~v~i~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~aDlVilavP~~-~~~~vl~- 78 (359)
T PRK06545 1 RTVLIVGLGLIGGSLALAIKAAGPDVFIIGYDPSAAQLARALGFGVIDELAADLQRAAAEADLIVLAVPVD-ATAALLA- 78 (359)
T ss_pred CeEEEEEeCHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHhcCCCCcccccCHHHHhcCCCEEEEeCCHH-HHHHHHH-
Confidence 579999999999999999999998888877654332 22233322 136788999999999999964 4555553
Q ss_pred HHHh-cCCCCcEEEEcCCCchhcHHHHHHHHhCCCeeEEEeeccCCCCCC---------CCCccccCCcEEEcCCCCCCc
Q 006864 304 ETFA-KMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEEPPA---------KDSKLVQHENVTVTPHLGAST 373 (628)
Q Consensus 304 ~~l~-~mk~gailIN~aRg~~vde~aL~~aL~~g~i~ga~lDV~~~EP~~---------~~~~L~~~~nvilTPHig~~T 373 (628)
+... .++++++|+|++.-+.-..+++.+.+..+ . .+....|++ ++..|+....+++||+-+..
T Consensus 79 ~l~~~~l~~~~ivtDv~SvK~~i~~~~~~~~~~~-~-----~~ig~HPMaG~e~sG~~aa~~~lf~g~~~il~~~~~~~- 151 (359)
T PRK06545 79 ELADLELKPGVIVTDVGSVKGAILAEAEALLGDL-I-----RFVGGHPMAGSHKSGVAAARADLFENAPWVLTPDDHTD- 151 (359)
T ss_pred HHhhcCCCCCcEEEeCccccHHHHHHHHHhcCCC-C-----eEEeeCCcCcCchhhHHHhcHHHHCCCcEEEecCCCCC-
Confidence 3333 47899999999998876666655543222 1 112224543 23468899999999987654
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCcccCCCCCcccccccc------cHH---HHHHHHh---HHHHHHhcCCCCceEE
Q 006864 374 KEAQEGVAIEIAEAVVGALRGELSATAINAPMVPSEVLSELA------PYV---VLAKKLG---RLAVQLVSGGSGIKSV 441 (628)
Q Consensus 374 ~ea~~~~~~~~~~~i~~~l~g~~~~~~vn~p~~~~~~~~~~~------p~~---~lAerlG---~la~qL~~g~~~~~~v 441 (628)
.+. .+.+.++++.-... .+ .++++.+|.+- |++ .|+..++ ..+.+|+++ +|+++
T Consensus 152 ~~~--------~~~v~~l~~~lGa~-~v---~~~~~~HD~~~A~vshlPh~ia~al~~~~~~~~~~~~~la~~--gfrd~ 217 (359)
T PRK06545 152 PDA--------VAELKDLLSGTGAK-FV---VLDAEEHDRAVALVSHLPHILASSLAARLAGEHPLALRLAAG--GFRDI 217 (359)
T ss_pred HHH--------HHHHHHHHHHcCCE-EE---ECCHHHHhHHHhHhccHHHHHHHHHHHhhccCchHHHhhhcc--cccCC
Confidence 222 23333333322211 11 23444555433 322 2344443 245678887 89999
Q ss_pred EEEEeecCCCCCCCcccchHHHHHhhccccccCcccccchHhHHhhcCceEEEEEeecCCCCCCCCceEEEEEEeccccc
Q 006864 442 KLIYRSARDPDDLDTRILRAMITKGIIEPISASFINLVNADFTAKQKGLRISEERVVADSSPEFPIDSIQVQLSNVDSKF 521 (628)
Q Consensus 442 ~i~~~Gs~a~~~~~~~~~~~a~l~GlL~~~~~~~vnlvNA~~iAke~GI~i~~~~~~~~~~~~~~~ntv~v~l~~~~~~~ 521 (628)
++...+++. +|.+....++..+...|+.+..+...++++..--+...|.-.|.+.. ...+.+..+
T Consensus 218 tRia~~~p~-~w~di~~~N~~~~~~~l~~~~~~l~~~~~~l~~~d~~~l~~~~~~~~------~~r~~~~~~-------- 282 (359)
T PRK06545 218 TRIASSDPG-MWRDILESNAEALLDALDEWIEDLDRARDALESGDAEAIAELFDAGK------AGRDRLPGK-------- 282 (359)
T ss_pred ccccCCCHH-HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH------HHHHhCccc--------
Confidence 999999998 99999999999888889888877667777775433333332222211 111111111
Q ss_pred ceeeCCCcEEEEEEEEECCeeEEEEECceeEEeecCCcEEEEeccCCCCchhhHHhhhhcCCccccceEEeeeecCccEE
Q 006864 522 AAAVSENGEISIEGKVKFGIPHLTRVGSFGVDASLEGNLILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGI 601 (628)
Q Consensus 522 ~~~~~~~~~~~v~Gt~~gG~~~I~~Idgf~Vd~~~~~~~Llv~~~D~PGvIa~V~~iL~~~~INIa~m~v~R~~~gg~Al 601 (628)
.+ ...++++.|++..+|+||.|+.|+++|+++||||.++++.+.+++..++
T Consensus 283 -----~~------------------------~~~~~~~~~~v~v~d~pg~~~~~~~~~~~~~i~i~~~~i~~~~~~~~g~ 333 (359)
T PRK06545 283 -----HG------------------------GAIPSFYDLYVDVPDEPGVIARVTAILGEEGISIENLRILEAREDIHGV 333 (359)
T ss_pred -----cC------------------------CCCCcceEEEEeCCCCCCHHHHHHHHHHHcCCCeecceeeeccCCcCce
Confidence 11 1456789999999999999999999999999999999999998888899
Q ss_pred EEEEeCCCCCHHHHHHH
Q 006864 602 MAIGVDEEPNQDSLKEI 618 (628)
Q Consensus 602 ~~i~vD~~~~~~~l~~L 618 (628)
..|.++.+...+...++
T Consensus 334 ~~~~~~~~~~~~~~~~~ 350 (359)
T PRK06545 334 LQISFKNEEDRERAKAL 350 (359)
T ss_pred EEEEeCCHHHHHHHHHH
Confidence 99999887665444443
|
|
| >TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.7e-19 Score=186.08 Aligned_cols=170 Identities=21% Similarity=0.350 Sum_probs=137.6
Q ss_pred hcCCCeEEEEcCC----------------CCCCHHHHHhcCCcceeEEecccccCcccHh-HHHhcCceEE------cCC
Q 006864 127 KISQCDALIVRSG----------------TKVTRSVFEAANGKLKVVGRAGVGIDNVDLQ-AATEFGCLVV------NAP 183 (628)
Q Consensus 127 ~~~~~d~liv~~~----------------~~v~~~~l~~~~~~Lk~I~~~g~G~D~iDl~-aa~~~GI~V~------n~p 183 (628)
.+.++|++|+--. ..++++++++++ .++...+|+++.|++ +|+++||.|+ |++
T Consensus 51 ~~~~~~~~i~p~~~~~~~~~i~~~~~~~~~~l~~~~l~~~~----~~~~~~~G~~~~~l~~~a~~~gi~v~~~~~~~~va 126 (287)
T TIGR02853 51 DLTTLDVVILPVPGTSHDGKVATVFSNEKVVLTPELLESTK----GHCTIYVGISNPYLEQLAADAGVKLIELFERDDVA 126 (287)
T ss_pred hhccCCEEEECCccccCCceEecccccCCccccHHHHHhcC----CCCEEEEecCCHHHHHHHHHCCCeEEEEEeccceE
Confidence 3678888876422 225688887763 477788999999999 9999999999 999
Q ss_pred CCChhhHHHHHHHHHHHHHHchhHHHHHHHcCcccccccceeeecCCeEEEEecChhHHHHHHHHHcCCCEEEEECCCCC
Q 006864 184 IANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAP 263 (628)
Q Consensus 184 ~~~~~avAE~~l~l~L~~~R~i~~~~~~~~~g~W~~~~~~g~~l~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~ 263 (628)
.+|+.++||+++++++.. .+.+++|++++|+|+|.||+.+|++|+++|++|.++|+...
T Consensus 127 ~~n~~~~Ae~ai~~al~~---------------------~~~~l~gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~~ 185 (287)
T TIGR02853 127 IYNSIPTAEGAIMMAIEH---------------------TDFTIHGSNVMVLGFGRTGMTIARTFSALGARVFVGARSSA 185 (287)
T ss_pred EEccHhHHHHHHHHHHHh---------------------cCCCCCCCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 999999999999877732 24478999999999999999999999999999999998752
Q ss_pred -hhHHHHcCCccc---CHHHHhccCCEEEEcCCCCccccccccHHHHhcCCCCcEEEEcCCCc-hhcH
Q 006864 264 -ADKARAVGVELV---SFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGG-VIDE 326 (628)
Q Consensus 264 -~~~a~~~g~~~~---sl~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~-~vde 326 (628)
...+...++..+ +++++++++|+|++|+|.. +++++.++.||+++++||++... -.|.
T Consensus 186 ~~~~~~~~g~~~~~~~~l~~~l~~aDiVint~P~~-----ii~~~~l~~~k~~aliIDlas~Pg~tdf 248 (287)
T TIGR02853 186 DLARITEMGLIPFPLNKLEEKVAEIDIVINTIPAL-----VLTADVLSKLPKHAVIIDLASKPGGTDF 248 (287)
T ss_pred HHHHHHHCCCeeecHHHHHHHhccCCEEEECCChH-----HhCHHHHhcCCCCeEEEEeCcCCCCCCH
Confidence 233344565433 5778899999999999964 77889999999999999998743 3344
|
This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA. |
| >PRK08818 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.2e-18 Score=187.27 Aligned_cols=310 Identities=17% Similarity=0.186 Sum_probs=201.0
Q ss_pred cCCeEEEEec-ChhHHHHHHHHHc-CCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEcCCCCccccccccH-H
Q 006864 228 VGKTLAVMGF-GKVGSEVARRAKG-LGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFND-E 304 (628)
Q Consensus 228 ~GktiGIIGl-G~IG~~vA~~l~~-~G~~V~~~d~~~~~~~a~~~g~~~~sl~ell~~aDvV~l~~Plt~~t~~li~~-~ 304 (628)
.-.||+|||+ |.||+++|+.|+. +|.+|++||+... ...++++.+++||+|++|+|... +..++.+ .
T Consensus 3 ~~~~I~IIGl~GliGgslA~alk~~~~~~V~g~D~~d~---------~~~~~~~~v~~aDlVilavPv~~-~~~~l~~l~ 72 (370)
T PRK08818 3 AQPVVGIVGSAGAYGRWLARFLRTRMQLEVIGHDPADP---------GSLDPATLLQRADVLIFSAPIRH-TAALIEEYV 72 (370)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhcCCCEEEEEcCCcc---------ccCCHHHHhcCCCEEEEeCCHHH-HHHHHHHHh
Confidence 4579999999 9999999999995 5899999998410 12367888999999999999654 4444432 1
Q ss_pred HH-hcCCCCcEEEEcCCCchhcHHHHHHHHhCCCeeEEEeeccCCCCCC--CCCccccCCcEEEcCCCCCCcHHHHHHHH
Q 006864 305 TF-AKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEEPPA--KDSKLVQHENVTVTPHLGASTKEAQEGVA 381 (628)
Q Consensus 305 ~l-~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~ga~lDV~~~EP~~--~~~~L~~~~nvilTPHig~~T~ea~~~~~ 381 (628)
.+ ..+|++++|+|+++-+.--.+++. +.+ .++.+..|+. ..+.+|+..++++||. ...+.
T Consensus 73 ~~~~~l~~~~iVtDVgSvK~~i~~~~~---~~~------~~fVG~HPMaG~E~s~lf~g~~~iltp~---~~~~~----- 135 (370)
T PRK08818 73 ALAGGRAAGQLWLDVTSIKQAPVAAML---ASQ------AEVVGLHPMTAPPKSPTLKGRVMVVCEA---RLQHW----- 135 (370)
T ss_pred hhhcCCCCCeEEEECCCCcHHHHHHHH---hcC------CCEEeeCCCCCCCCCcccCCCeEEEeCC---CchhH-----
Confidence 11 247999999999998854444432 211 1356677864 2357899999999997 22221
Q ss_pred HHHHHHHHHHHcCCCCCCcccCCCCCcccccccccHH---------HHHHHH-------hHHHH--HHhcCCCCce----
Q 006864 382 IEIAEAVVGALRGELSATAINAPMVPSEVLSELAPYV---------VLAKKL-------GRLAV--QLVSGGSGIK---- 439 (628)
Q Consensus 382 ~~~~~~i~~~l~g~~~~~~vn~p~~~~~~~~~~~p~~---------~lAerl-------G~la~--qL~~g~~~~~---- 439 (628)
...++++...+..+. -.++++++|++--++ .++.-+ +.++. .+.++ +|+
T Consensus 136 ~~~v~~l~~~~Ga~v-------~~~~aeeHD~~~A~vS~LsHl~~l~~~~~~~~~~~~~~~~~~~~~f~~~--gFr~d~t 206 (370)
T PRK08818 136 SPWVQSLCSALQAEC-------VYATPEHHDRVMALVQAMVHATHLAQAGVLRDYAPLLGELRALMPYRSA--SFELDTA 206 (370)
T ss_pred HHHHHHHHHHcCCEE-------EEcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhhhhccccch--hhHHHhh
Confidence 112344444333222 257788888866444 222211 11111 23344 677
Q ss_pred EEEEEEeecCCCCCCCcccchHHHHHhhccccccCcccccchHhHHhhcCceEE---EEEeecCCCCCCC-CceEE----
Q 006864 440 SVKLIYRSARDPDDLDTRILRAMITKGIIEPISASFINLVNADFTAKQKGLRIS---EERVVADSSPEFP-IDSIQ---- 511 (628)
Q Consensus 440 ~v~i~~~Gs~a~~~~~~~~~~~a~l~GlL~~~~~~~vnlvNA~~iAke~GI~i~---~~~~~~~~~~~~~-~ntv~---- 511 (628)
.+++++.+++. +|.+....|+ .+.-.|+.+.+....+.++..--++.+|.-. |..... ..+ .+.+.
T Consensus 207 ~iTRIAss~P~-mW~dI~~~N~-~i~~~l~~~~~~L~~l~~~i~~~D~~~~~~~~~~f~~a~~----~~~~r~~~~~~~~ 280 (370)
T PRK08818 207 VIARILSLNPS-IYEDIQFGNP-YVGEMLDRLLAQLQELRALVAQGDDAARARFRAQFLHANA----QALQEDALAAGNY 280 (370)
T ss_pred hcchhhcCCHH-HHHHHHHhCH-HHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh----hhcchhhCCcccc
Confidence 66799999998 9999999999 5666776666665566665543333333222 221110 001 11221
Q ss_pred -EEEEecccccceeeCCCcEEEEEEEEECCeeEEEEECceeEEeec----CCcEEEEecc-CCCCchhhHHhhhhcCCcc
Q 006864 512 -VQLSNVDSKFAAAVSENGEISIEGKVKFGIPHLTRVGSFGVDASL----EGNLILCRQV-DQPGMIGKVGNILGEHNVN 585 (628)
Q Consensus 512 -v~l~~~~~~~~~~~~~~~~~~v~Gt~~gG~~~I~~Idgf~Vd~~~----~~~~Llv~~~-D~PGvIa~V~~iL~~~~IN 585 (628)
.+-. ...+ +.+.|+|..+ |+||.|+.|.++|++++||
T Consensus 281 ~~~~~-------------------------------------g~~~~~~~~~~~l~~~v~~d~pG~L~~vl~~la~~~IN 323 (370)
T PRK08818 281 TYERV-------------------------------------GYLLADLTEPLTLSVYLPEDRPGSLRTLLHVFEQHGVN 323 (370)
T ss_pred ccccc-------------------------------------ccccCCCCcceEEEEECCCCCCChHHHHHHHHHHcCcc
Confidence 1110 1334 6788888885 9999999999999999999
Q ss_pred ccceEEeeeecCccEEEEEEeCCCCCHHHHHH
Q 006864 586 VNFMSVGRTFRRNHGIMAIGVDEEPNQDSLKE 617 (628)
Q Consensus 586 Ia~m~v~R~~~gg~Al~~i~vD~~~~~~~l~~ 617 (628)
|.+++..+.+.+... ..|++..+.+...+.+
T Consensus 324 it~Ies~~~r~~~y~-f~i~~~~~~~~~~~~~ 354 (370)
T PRK08818 324 LSSIHSSRTPAGELH-FRIGFEPGSDRAALAR 354 (370)
T ss_pred cceEEEecccCceEE-EEEEEeccccHHHHHH
Confidence 999999888887777 7888887666665544
|
|
| >PRK08306 dipicolinate synthase subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.3e-14 Score=152.54 Aligned_cols=166 Identities=22% Similarity=0.337 Sum_probs=132.6
Q ss_pred hhcCCCeEEEEcCC----------------CCCCHHHHHhcCCcceeEEecccccCcccHhHHHhcCceEEcCCCC----
Q 006864 126 EKISQCDALIVRSG----------------TKVTRSVFEAANGKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIA---- 185 (628)
Q Consensus 126 ~~~~~~d~liv~~~----------------~~v~~~~l~~~~~~Lk~I~~~g~G~D~iDl~aa~~~GI~V~n~p~~---- 185 (628)
+.+.++|+++.-.. ..++++.++.++ ++..+. .|.+.+++| +.|.++||.|++.+..
T Consensus 51 ~~~~~ad~ii~~~p~~~~~~~i~~~~~~~~~~~~~~~l~~l~-~~~~v~-~G~~~~~~~-~~~~~~gi~~~~~~~~~~~~ 127 (296)
T PRK08306 51 EALSDVDVIILPVPGTNDEGNVDTVFSNEKLVLTEELLELTP-EHCTIF-SGIANPYLK-ELAKETNRKLVELFERDDVA 127 (296)
T ss_pred HHhccCCEEEECCccccCCceeeccccccCCcchHHHHHhcC-CCCEEE-EecCCHHHH-HHHHHCCCeEEEEeccchhh
Confidence 45789999985411 123678898885 675433 599999998 8999999999998864
Q ss_pred --ChhhHHHHHHHHHHHHHHchhHHHHHHHcCcccccccceeeecCCeEEEEecChhHHHHHHHHHcCCCEEEEECCCC-
Q 006864 186 --NTVAAAEHGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA- 262 (628)
Q Consensus 186 --~~~avAE~~l~l~L~~~R~i~~~~~~~~~g~W~~~~~~g~~l~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~- 262 (628)
|+.++||.++.+++. ..+..+.|++++|||+|.+|+.++++|+++|++|.++|++.
T Consensus 128 ~~ns~~~aegav~~a~~---------------------~~~~~l~g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~~ 186 (296)
T PRK08306 128 ILNSIPTAEGAIMMAIE---------------------HTPITIHGSNVLVLGFGRTGMTLARTLKALGANVTVGARKSA 186 (296)
T ss_pred hhccHhHHHHHHHHHHH---------------------hCCCCCCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHH
Confidence 889999997765431 11346789999999999999999999999999999999985
Q ss_pred ChhHHHHcCCccc---CHHHHhccCCEEEEcCCCCccccccccHHHHhcCCCCcEEEEcCC
Q 006864 263 PADKARAVGVELV---SFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVAR 320 (628)
Q Consensus 263 ~~~~a~~~g~~~~---sl~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aR 320 (628)
....+.+.|++.+ ++.+.++++|+|+.++|. .+++++.++.|++++++||++.
T Consensus 187 ~~~~~~~~G~~~~~~~~l~~~l~~aDiVI~t~p~-----~~i~~~~l~~~~~g~vIIDla~ 242 (296)
T PRK08306 187 HLARITEMGLSPFHLSELAEEVGKIDIIFNTIPA-----LVLTKEVLSKMPPEALIIDLAS 242 (296)
T ss_pred HHHHHHHcCCeeecHHHHHHHhCCCCEEEECCCh-----hhhhHHHHHcCCCCcEEEEEcc
Confidence 3344556777654 467888999999999983 5688999999999999999975
|
|
| >PLN02494 adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=99.58 E-value=4.9e-15 Score=162.27 Aligned_cols=121 Identities=21% Similarity=0.301 Sum_probs=107.3
Q ss_pred eeeecCCeEEEEecChhHHHHHHHHHcCCCEEEEECCCCC-hhHHHHcCCcccCHHHHhccCCEEEEcCCCCcccccccc
Q 006864 224 GVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAP-ADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFN 302 (628)
Q Consensus 224 g~~l~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~g~~~~sl~ell~~aDvV~l~~Plt~~t~~li~ 302 (628)
+..+.||+++|+|+|.||+.+|+++++|||+|+++|+... ...+...|+..++++++++.+|+|+. +..++++++
T Consensus 249 ~i~LaGKtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~r~~eA~~~G~~vv~leEal~~ADVVI~----tTGt~~vI~ 324 (477)
T PLN02494 249 DVMIAGKVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPICALQALMEGYQVLTLEDVVSEADIFVT----TTGNKDIIM 324 (477)
T ss_pred CCccCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhHHHHhcCCeeccHHHHHhhCCEEEE----CCCCccchH
Confidence 3458999999999999999999999999999999987753 34566678877789999999999987 345789999
Q ss_pred HHHHhcCCCCcEEEEcCC-CchhcHHHHHHH--HhCCCeeEEEeeccCCC
Q 006864 303 DETFAKMKKGVRIVNVAR-GGVIDEEALVRA--LDSGVVAQAALDVFTEE 349 (628)
Q Consensus 303 ~~~l~~mk~gailIN~aR-g~~vde~aL~~a--L~~g~i~ga~lDV~~~E 349 (628)
.+.|+.||+|++|+|++| +..||+++|.++ ++.+.+. +.+|+|..|
T Consensus 325 ~e~L~~MK~GAiLiNvGr~~~eID~~aL~~~~~l~~~~i~-~~vd~y~~~ 373 (477)
T PLN02494 325 VDHMRKMKNNAIVCNIGHFDNEIDMLGLETYPGVKRITIK-PQTDRWVFP 373 (477)
T ss_pred HHHHhcCCCCCEEEEcCCCCCccCHHHHhhccccceeccC-CCceEEEcC
Confidence 999999999999999999 679999999998 8888886 999999986
|
|
| >TIGR00936 ahcY adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=99.49 E-value=8.8e-14 Score=151.25 Aligned_cols=121 Identities=26% Similarity=0.389 Sum_probs=105.5
Q ss_pred eeeecCCeEEEEecChhHHHHHHHHHcCCCEEEEECCCC-ChhHHHHcCCcccCHHHHhccCCEEEEcCCCCcccccccc
Q 006864 224 GVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA-PADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFN 302 (628)
Q Consensus 224 g~~l~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~g~~~~sl~ell~~aDvV~l~~Plt~~t~~li~ 302 (628)
+..+.|++++|+|+|.||+.+|++++++|++|+++|... ....+...|+...+++++++.+|+|+.++. +.++++
T Consensus 190 ~~~l~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~~~G~~v~~leeal~~aDVVItaTG----~~~vI~ 265 (406)
T TIGR00936 190 NLLIAGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRALEAAMDGFRVMTMEEAAKIGDIFITATG----NKDVIR 265 (406)
T ss_pred CCCCCcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhHHHHHhcCCEeCCHHHHHhcCCEEEECCC----CHHHHH
Confidence 445899999999999999999999999999999997654 223455668877789999999999987653 688999
Q ss_pred HHHHhcCCCCcEEEEcCCCch-hcHHHHHHHHhCCCeeEEEeeccCC
Q 006864 303 DETFAKMKKGVRIVNVARGGV-IDEEALVRALDSGVVAQAALDVFTE 348 (628)
Q Consensus 303 ~~~l~~mk~gailIN~aRg~~-vde~aL~~aL~~g~i~ga~lDV~~~ 348 (628)
.+.|..||+|++++|++|+.+ ||.++|.+++.+.+..+..+|+|.-
T Consensus 266 ~~~~~~mK~GailiN~G~~~~eId~~aL~~~~~~~~~~~~~v~~~~~ 312 (406)
T TIGR00936 266 GEHFENMKDGAIVANIGHFDVEIDVKALEELAVEKRNVRPQVDEYIL 312 (406)
T ss_pred HHHHhcCCCCcEEEEECCCCceeCHHHHHHHHhhccccccceEEEEe
Confidence 999999999999999999998 9999999999887777899999884
|
This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704). |
| >PRK13403 ketol-acid reductoisomerase; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=8.9e-14 Score=145.84 Aligned_cols=93 Identities=25% Similarity=0.422 Sum_probs=82.1
Q ss_pred eeecCCeEEEEecChhHHHHHHHHHcCCCEEEEECCCC-ChhHHHHcCCcccCHHHHhccCCEEEEcCCCCccccccccH
Q 006864 225 VSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA-PADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFND 303 (628)
Q Consensus 225 ~~l~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~g~~~~sl~ell~~aDvV~l~~Plt~~t~~li~~ 303 (628)
..|+||||||||+|.||+++|++|+++||+|++||+.. +.+.+...|++..++++++++||+|++|+|. +++++++++
T Consensus 12 ~~LkgKtVGIIG~GsIG~amA~nL~d~G~~ViV~~r~~~s~~~A~~~G~~v~sl~Eaak~ADVV~llLPd-~~t~~V~~~ 90 (335)
T PRK13403 12 ELLQGKTVAVIGYGSQGHAQAQNLRDSGVEVVVGVRPGKSFEVAKADGFEVMSVSEAVRTAQVVQMLLPD-EQQAHVYKA 90 (335)
T ss_pred hhhCcCEEEEEeEcHHHHHHHHHHHHCcCEEEEEECcchhhHHHHHcCCEECCHHHHHhcCCEEEEeCCC-hHHHHHHHH
Confidence 57999999999999999999999999999999996543 3345566688777999999999999999996 678999999
Q ss_pred HHHhcCCCCcEEEEc
Q 006864 304 ETFAKMKKGVRIVNV 318 (628)
Q Consensus 304 ~~l~~mk~gailIN~ 318 (628)
+.+..||+|++|+-.
T Consensus 91 eil~~MK~GaiL~f~ 105 (335)
T PRK13403 91 EVEENLREGQMLLFS 105 (335)
T ss_pred HHHhcCCCCCEEEEC
Confidence 999999999988764
|
|
| >COG1760 SdaA L-serine deaminase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.44 E-value=4.5e-16 Score=157.34 Aligned_cols=190 Identities=18% Similarity=0.136 Sum_probs=171.7
Q ss_pred HHHHHHhHHHHHHhcCCCC---ceEEEEEEeecCCCCCCCcccchHHHHHhhccccccCcccccchHhHHhhcCceEEEE
Q 006864 419 VLAKKLGRLAVQLVSGGSG---IKSVKLIYRSARDPDDLDTRILRAMITKGIIEPISASFINLVNADFTAKQKGLRISEE 495 (628)
Q Consensus 419 ~lAerlG~la~qL~~g~~~---~~~v~i~~~Gs~a~~~~~~~~~~~a~l~GlL~~~~~~~vnlvNA~~iAke~GI~i~~~ 495 (628)
.-+.|+|+.+++|.+. . ++.+.+.++++++ .++.+|+++.|.+.|.+ ++.+++.++.+.+.++.++||.+.+.
T Consensus 55 aGa~rigr~A~~l~~~--~~~~~~~v~~~a~a~~e-ena~Gg~~~~Apt~Ga~-G~~P~vl~~~~~~~~a~~~~i~~fl~ 130 (262)
T COG1760 55 AGALRIGRRARALFGE--LKNVPDWVNIYAYASFE-ENAAGGGTVTAPTAGAL-GIIPAVLRIKESFEIAAEKGIKIFLL 130 (262)
T ss_pred cccceechhHHHHHHH--HhhhhHHHHHHHHHhhH-hhccCCcEeeeccCccc-cCCcchHHHHHHhhhhhhhhhHhhhh
Confidence 3456789999999876 6 8899999999998 99999999999999999 77788899999999999999999887
Q ss_pred EeecCCCCCCCCceEEEEEEecccccceeeCCCcEEEEEEEEEC-CeeEEEEECceeEEeecCCcEEEEeccCCCCchhh
Q 006864 496 RVVADSSPEFPIDSIQVQLSNVDSKFAAAVSENGEISIEGKVKF-GIPHLTRVGSFGVDASLEGNLILCRQVDQPGMIGK 574 (628)
Q Consensus 496 ~~~~~~~~~~~~ntv~v~l~~~~~~~~~~~~~~~~~~v~Gt~~g-G~~~I~~Idgf~Vd~~~~~~~Llv~~~D~PGvIa~ 574 (628)
.....+ ..|||++.|.. .+++...+.|.+.| |.+.+++++|+.+++.+..+.+++.|. +|++..
T Consensus 131 ~a~aig--~~~~nnAsIsg-----------ae~gcq~evGsa~~maaa~l~el~Ggs~~q~~~a~~i~~~h~--lGltcd 195 (262)
T COG1760 131 TAGAIG--ALHPNNASISG-----------AEGGCQGEVGSAIGMGAAALTELNGGSPEQSGNAPEIAMEHN--LGLTCD 195 (262)
T ss_pred hccccc--ccccCcceEEe-----------ccCceEEEeehhhhhHHHHHHHHhCCChHHhccccHHHHhcC--CCceeh
Confidence 655432 47999999876 46889999999998 789999999999999999999999998 999999
Q ss_pred -HHhhhhcCCccccceEEeeeecCccEEEEEEeCCCCCHHHHHHHhcccCcccc
Q 006864 575 -VGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDEEPNQDSLKEIGKVHFVARI 627 (628)
Q Consensus 575 -V~~iL~~~~INIa~m~v~R~~~gg~Al~~i~vD~~~~~~~l~~L~~l~~v~~v 627 (628)
|+.++....||++.|...|...+.++.|+++.|..+.+++++.+++++...++
T Consensus 196 pVaglV~vpcI~rnam~a~rai~aa~~am~~~~~~~~~DevI~tM~~~g~~m~~ 249 (262)
T COG1760 196 PVAGLVQVPCINRNAMGAVRAINGAKAAMAIEVDQRPLDEVIETMYETGKDMNV 249 (262)
T ss_pred hhhchhhhhhhhHHHHHHHHHhhhhhhhheecCCCCChHHHHHHHHHhhhhcch
Confidence 99999999999999999999999999999999999999999999998876543
|
|
| >PRK07417 arogenate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=99.40 E-value=6.5e-13 Score=138.49 Aligned_cols=230 Identities=15% Similarity=0.145 Sum_probs=145.6
Q ss_pred CeEEEEecChhHHHHHHHHHcCCCEEEEECCCC-ChhHHHHcCCc--ccCHHHHhccCCEEEEcCCCCccccccccHHHH
Q 006864 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA-PADKARAVGVE--LVSFDQALATADFISLHMPLNPTTSKIFNDETF 306 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~g~~--~~sl~ell~~aDvV~l~~Plt~~t~~li~~~~l 306 (628)
++|||||+|.||+++|+.|+..|++|.+||+.. ..+.+.+.|.. ..+..+.+++||+|++|+|... ...++ ++..
T Consensus 1 m~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~~~~~~a~~~g~~~~~~~~~~~~~~aDlVilavp~~~-~~~~~-~~l~ 78 (279)
T PRK07417 1 MKIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRESTCERAIERGLVDEASTDLSLLKDCDLVILALPIGL-LLPPS-EQLI 78 (279)
T ss_pred CeEEEEeecHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCcccccCCHhHhcCCCEEEEcCCHHH-HHHHH-HHHH
Confidence 379999999999999999999999999999875 23344455532 2222357899999999999443 23332 4556
Q ss_pred hcCCCCcEEEEcCCCchhcHHHHHHHHhCCCeeEEEeeccCCCCCC---------CCCccccCCcEEEcCCCCCCcHHHH
Q 006864 307 AKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEEPPA---------KDSKLVQHENVTVTPHLGASTKEAQ 377 (628)
Q Consensus 307 ~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~ga~lDV~~~EP~~---------~~~~L~~~~nvilTPHig~~T~ea~ 377 (628)
..++++++++|++.-+.-..+++.+... ++ ....|+. ....||...++++||+-+.. .++.
T Consensus 79 ~~l~~~~ii~d~~Svk~~~~~~~~~~~~--~~-------v~~HPm~G~~~~g~~~a~~~lf~g~~~~l~p~~~~~-~~~~ 148 (279)
T PRK07417 79 PALPPEAIVTDVGSVKAPIVEAWEKLHP--RF-------VGSHPMAGTAESGVEAGQRGLFKNRPWVLTPTENTD-LNAL 148 (279)
T ss_pred HhCCCCcEEEeCcchHHHHHHHHHHhhC--Cc-------eeeCCcCCCCcchHHHhhHHHhCCCcEEEccCCCCC-HHHH
Confidence 6789999999999866544333332211 22 2223432 12247888999999987654 2222
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCcccCCCCCcccccccc------cHHHHHHHHhH-----------HHHHHhcCCCCceE
Q 006864 378 EGVAIEIAEAVVGALRGELSATAINAPMVPSEVLSELA------PYVVLAKKLGR-----------LAVQLVSGGSGIKS 440 (628)
Q Consensus 378 ~~~~~~~~~~i~~~l~g~~~~~~vn~p~~~~~~~~~~~------p~~~lAerlG~-----------la~qL~~g~~~~~~ 440 (628)
..++.+.+.+..... .++++.++++- |++-...-+.. ++..++++ +|++
T Consensus 149 -----~~v~~l~~~lG~~~v-------~~~~~~hD~~~a~~shlp~~~a~~l~~~~~~~~~~~~~~~~~~~~~~--gfrd 214 (279)
T PRK07417 149 -----AIVEELAVSLGSKIY-------TADPEEHDRAVALISHLPVMVSAALIQTCGTEKDPSVLKLAQNLASS--GFAD 214 (279)
T ss_pred -----HHHHHHHHHcCCEEE-------EcCHHHHHHHHHHHcchHHHHHHHHHHHHhhcccchhhHHhhhhccC--cccc
Confidence 223344333322211 23444444432 33222121111 12356666 8999
Q ss_pred EEEEEeecCCCCCCCcccchHHHHHhhccccccCcccccchHhHHh
Q 006864 441 VKLIYRSARDPDDLDTRILRAMITKGIIEPISASFINLVNADFTAK 486 (628)
Q Consensus 441 v~i~~~Gs~a~~~~~~~~~~~a~l~GlL~~~~~~~vnlvNA~~iAk 486 (628)
++++..+++. +|.+....|+..+...|+.+..+...+.++..--+
T Consensus 215 ~tRia~~~p~-~w~~i~~~N~~~i~~~l~~~~~~l~~~~~~l~~~d 259 (279)
T PRK07417 215 TSRVGGGNPE-LGVMMAEYNRAALLRSLASYRQSLDQLEELIEQEN 259 (279)
T ss_pred cccccCCChH-HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 9999999998 99999999998776678777776666666664333
|
|
| >PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=6.3e-12 Score=137.58 Aligned_cols=211 Identities=20% Similarity=0.250 Sum_probs=140.0
Q ss_pred HhHHHHhhcCC-cEEEecCCCHhHHHh----hc--CCCeEEEEcCCCCCCHHHHHhc---CCcceeE-EecccccCcc-c
Q 006864 101 EAGLAILRSFG-NVECLYDLSPEALCE----KI--SQCDALIVRSGTKVTRSVFEAA---NGKLKVV-GRAGVGIDNV-D 168 (628)
Q Consensus 101 ~~~~~~l~~~~-~v~~~~~~~~~el~~----~~--~~~d~liv~~~~~v~~~~l~~~---~~~Lk~I-~~~g~G~D~i-D 168 (628)
++..+.|.+.+ .|......+.+|... .+ .+.|++ +..+..+..-+-... .++++-+ =-.++|+... .
T Consensus 87 d~vaaaL~~~gi~v~a~~~~~~~ey~~~~~~~l~~~~p~ii-iDdGgdl~~~~~~~~~~~~~~i~G~~EeTttGv~rl~~ 165 (425)
T PRK05476 87 DDVAAALAAAGIPVFAWKGETLEEYWECIERALDGHGPNMI-LDDGGDLTLLVHTERPELLANIKGVTEETTTGVHRLYA 165 (425)
T ss_pred HHHHHHHHHCCceEEecCCCCHHHHHHHHHHHhcCCCCCEE-EecccHHHHHHHHHhhHhHhccEeeeecchHHHHHHHH
Confidence 45555565543 443334455555422 22 234544 444444443332221 1233333 2468888874 3
Q ss_pred HhHHHhcCceEEcCCCCChhhHHHHHHHHHHHHHHchhHHHHHHHcCccccc-ccceeeecCCeEEEEecChhHHHHHHH
Q 006864 169 LQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRS-KYVGVSLVGKTLAVMGFGKVGSEVARR 247 (628)
Q Consensus 169 l~aa~~~GI~V~n~p~~~~~avAE~~l~l~L~~~R~i~~~~~~~~~g~W~~~-~~~g~~l~GktiGIIGlG~IG~~vA~~ 247 (628)
+....+.+++|.|++..++...-|...+. ..+.|+.- ...+..+.|++++|+|+|.||+.+|++
T Consensus 166 ~~~~~~l~~Pv~~vn~s~~K~~~dn~~gt---------------~~s~~~ai~rat~~~l~Gk~VlViG~G~IG~~vA~~ 230 (425)
T PRK05476 166 MAKDGALKFPAINVNDSVTKSKFDNRYGT---------------GESLLDGIKRATNVLIAGKVVVVAGYGDVGKGCAQR 230 (425)
T ss_pred HHHcCCCCCCEEecCCcccCccccccHHH---------------HhhhHHHHHHhccCCCCCCEEEEECCCHHHHHHHHH
Confidence 33445678999999999887754433221 22233210 012446899999999999999999999
Q ss_pred HHcCCCEEEEECCCCCh-hHHHHcCCcccCHHHHhccCCEEEEcCCCCccccccccHHHHhcCCCCcEEEEcCCCch-hc
Q 006864 248 AKGLGMNVIAHDPYAPA-DKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGV-ID 325 (628)
Q Consensus 248 l~~~G~~V~~~d~~~~~-~~a~~~g~~~~sl~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~~-vd 325 (628)
|+++|++|+++|+.... ..+...|+...+++++++.+|+|+.++ .+.++|+.+.|..||+|++++|+++... +|
T Consensus 231 lr~~Ga~ViV~d~dp~ra~~A~~~G~~v~~l~eal~~aDVVI~aT----G~~~vI~~~~~~~mK~GailiNvG~~d~Eid 306 (425)
T PRK05476 231 LRGLGARVIVTEVDPICALQAAMDGFRVMTMEEAAELGDIFVTAT----GNKDVITAEHMEAMKDGAILANIGHFDNEID 306 (425)
T ss_pred HHhCCCEEEEEcCCchhhHHHHhcCCEecCHHHHHhCCCEEEECC----CCHHHHHHHHHhcCCCCCEEEEcCCCCCccC
Confidence 99999999999876522 334455777778999999999998865 3578899999999999999999999876 67
Q ss_pred HHHHHH
Q 006864 326 EEALVR 331 (628)
Q Consensus 326 e~aL~~ 331 (628)
.++|.+
T Consensus 307 ~~~L~~ 312 (425)
T PRK05476 307 VAALEE 312 (425)
T ss_pred hHHHhh
Confidence 777654
|
|
| >PLN02256 arogenate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.3e-13 Score=143.57 Aligned_cols=233 Identities=14% Similarity=0.153 Sum_probs=150.3
Q ss_pred eecCCeEEEEecChhHHHHHHHHHcCCCEEEEECCCCChhHHHHcCCccc-CHHHHh-ccCCEEEEcCCCCccccccccH
Q 006864 226 SLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELV-SFDQAL-ATADFISLHMPLNPTTSKIFND 303 (628)
Q Consensus 226 ~l~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~-sl~ell-~~aDvV~l~~Plt~~t~~li~~ 303 (628)
+-++++|||||+|.||+.+|+.|+..|++|++||+......+...|+... ++++++ .++|+|++|+|.. .+..++.+
T Consensus 33 ~~~~~kI~IIG~G~mG~slA~~L~~~G~~V~~~d~~~~~~~a~~~gv~~~~~~~e~~~~~aDvVilavp~~-~~~~vl~~ 111 (304)
T PLN02256 33 KSRKLKIGIVGFGNFGQFLAKTFVKQGHTVLATSRSDYSDIAAELGVSFFRDPDDFCEEHPDVVLLCTSIL-STEAVLRS 111 (304)
T ss_pred cCCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECccHHHHHHHcCCeeeCCHHHHhhCCCCEEEEecCHH-HHHHHHHh
Confidence 34678999999999999999999999999999998864444556676543 678876 4799999999954 56666654
Q ss_pred HHHhcCCCCcEEEEcCCCchhcHHHHHHHHhCCCeeEEEeeccCCCCCCC---CCccccCCcEEEcCCC---CCCcHHHH
Q 006864 304 ETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEEPPAK---DSKLVQHENVTVTPHL---GASTKEAQ 377 (628)
Q Consensus 304 ~~l~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~ga~lDV~~~EP~~~---~~~L~~~~nvilTPHi---g~~T~ea~ 377 (628)
-....++++++|+|++.++-+..+++.+.+..+. .+....|+.. ....+...+++++|+. .....++.
T Consensus 112 l~~~~l~~~~iviDv~SvK~~~~~~~~~~l~~~~------~~V~~HPmaG~e~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 185 (304)
T PLN02256 112 LPLQRLKRSTLFVDVLSVKEFPKNLLLQVLPEEF------DILCTHPMFGPESGKGGWAGLPFVYDKVRIGDEGEREARC 185 (304)
T ss_pred hhhhccCCCCEEEecCCchHHHHHHHHHhCCCCC------eEEecCCCCCCCCCccccCCCeEEEecceecCCCCCHHHH
Confidence 3356689999999999988777888887775542 1233344321 1234555666666653 22333332
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCcccCCCCCcccccccc------cHHHHHHHHhHHH---HHHhcCCCCceEEEEEEe--
Q 006864 378 EGVAIEIAEAVVGALRGELSATAINAPMVPSEVLSELA------PYVVLAKKLGRLA---VQLVSGGSGIKSVKLIYR-- 446 (628)
Q Consensus 378 ~~~~~~~~~~i~~~l~g~~~~~~vn~p~~~~~~~~~~~------p~~~lAerlG~la---~qL~~g~~~~~~v~i~~~-- 446 (628)
+ .+.++.+.+..+.. .++++++|++- |++ +|.-|..+. ..+++| +|++.+....
T Consensus 186 ~-----~l~~l~~~lGa~v~-------~~~~eeHD~~vA~iShLpH~-la~~L~~~~~~~~~~~~~--gfrd~tria~r~ 250 (304)
T PLN02256 186 E-----RFLDIFEEEGCRMV-------EMSCEEHDRYAAGSQFITHT-VGRILGKMELESTPINTK--GYETLLRLVENT 250 (304)
T ss_pred H-----HHHHHHHHCCCEEE-------EeCHHHHhHHHHhhhhHHHH-HHHHHHHcCCcccccccc--cHHHHHHHHHhh
Confidence 2 22333332322221 45677777643 332 222222221 145555 7888777765
Q ss_pred --ecCCCCCCCcccchHHHHHhhccccccCcccccchH
Q 006864 447 --SARDPDDLDTRILRAMITKGIIEPISASFINLVNAD 482 (628)
Q Consensus 447 --Gs~a~~~~~~~~~~~a~l~GlL~~~~~~~vnlvNA~ 482 (628)
+++. +|.++...|+..+ ..++.+.+....+.++.
T Consensus 251 ~~~~p~-lw~dI~~~N~~~~-~~i~~~~~~l~~~~~~l 286 (304)
T PLN02256 251 SSDSFD-LYYGLFMYNPNAT-EELERLELAFDSVKKQL 286 (304)
T ss_pred cCCCHH-HHHHHHHHChHHH-HHHHHHHHHHHHHHHHH
Confidence 8887 9999999998877 66766665544555444
|
|
| >PRK07502 cyclohexadienyl dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.4e-12 Score=137.67 Aligned_cols=238 Identities=19% Similarity=0.228 Sum_probs=147.4
Q ss_pred CCeEEEEecChhHHHHHHHHHcCCC--EEEEECCCC-ChhHHHHcCCc---ccCHHHHhccCCEEEEcCCCCcccccccc
Q 006864 229 GKTLAVMGFGKVGSEVARRAKGLGM--NVIAHDPYA-PADKARAVGVE---LVSFDQALATADFISLHMPLNPTTSKIFN 302 (628)
Q Consensus 229 GktiGIIGlG~IG~~vA~~l~~~G~--~V~~~d~~~-~~~~a~~~g~~---~~sl~ell~~aDvV~l~~Plt~~t~~li~ 302 (628)
.++|+|||+|.||+.+|+.|+..|. +|++||+.. ..+.+.+.|+. ..++++.+++||+|++|+|... +..++
T Consensus 6 ~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvViiavp~~~-~~~v~- 83 (307)
T PRK07502 6 FDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARELGLGDRVTTSAAEAVKGADLVILCVPVGA-SGAVA- 83 (307)
T ss_pred CcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhCCCCceecCCHHHHhcCCCEEEECCCHHH-HHHHH-
Confidence 4689999999999999999998884 899999875 23444555642 2367888999999999999532 23332
Q ss_pred HHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhCC-CeeEEEeeccCCC---CCCCCCccccCCcEEEcCCCCCCcHHHHH
Q 006864 303 DETFAKMKKGVRIVNVARGGVIDEEALVRALDSG-VVAQAALDVFTEE---PPAKDSKLVQHENVTVTPHLGASTKEAQE 378 (628)
Q Consensus 303 ~~~l~~mk~gailIN~aRg~~vde~aL~~aL~~g-~i~ga~lDV~~~E---P~~~~~~L~~~~nvilTPHig~~T~ea~~ 378 (628)
++....++++.++++++..+.-..+++.+.+..+ ++.+. --+++.| |-.....|+...++++||+-++. .++.+
T Consensus 84 ~~l~~~l~~~~iv~dvgs~k~~~~~~~~~~~~~~~~~v~~-hPm~g~e~~G~~~a~~~l~~g~~~~l~~~~~~~-~~~~~ 161 (307)
T PRK07502 84 AEIAPHLKPGAIVTDVGSVKASVIAAMAPHLPEGVHFIPG-HPLAGTEHSGPDAGFAELFENRWCILTPPEGTD-PAAVA 161 (307)
T ss_pred HHHHhhCCCCCEEEeCccchHHHHHHHHHhCCCCCeEEeC-CCCCCCcccchhhcCHHHHCCCeEEEeCCCCCC-HHHHH
Confidence 4455678999999999876654444555444332 22111 1122222 11123478888999999987654 33222
Q ss_pred HHHHHHHHHHHHHHcCCCCCCcccCCCCCcccccccc------cHHHHHHHH----------hHHHHHHhcCCCCceEEE
Q 006864 379 GVAIEIAEAVVGALRGELSATAINAPMVPSEVLSELA------PYVVLAKKL----------GRLAVQLVSGGSGIKSVK 442 (628)
Q Consensus 379 ~~~~~~~~~i~~~l~g~~~~~~vn~p~~~~~~~~~~~------p~~~lAerl----------G~la~qL~~g~~~~~~v~ 442 (628)
.+..+.+.+..... .++++.+|++- |++-...-. ..-...+.++ +|++.+
T Consensus 162 -----~~~~l~~~lG~~~~-------~~~~~~hD~~~A~~s~lph~~a~~l~~~~~~~~~~~~~~~~~~~~~--gfrd~t 227 (307)
T PRK07502 162 -----RLTAFWRALGARVE-------EMDPEHHDLVLAITSHLPHLIAYTIVGTADDLERVTESEVIKYSAS--GFRDFT 227 (307)
T ss_pred -----HHHHHHHHcCCEEE-------EcCHHHHhHHHHHHhhHHHHHHHHHHHHHhhhcccchHHHHHhccc--cccccc
Confidence 22333333322111 34455555533 322111111 1112246666 899999
Q ss_pred EEEeecCCCCCCCcccchHHHHHhhccccccCcccccchHhHH
Q 006864 443 LIYRSARDPDDLDTRILRAMITKGIIEPISASFINLVNADFTA 485 (628)
Q Consensus 443 i~~~Gs~a~~~~~~~~~~~a~l~GlL~~~~~~~vnlvNA~~iA 485 (628)
++..++.. +|.+....|+..+.-.|+.+......+.++..--
T Consensus 228 Ria~~~~~-~w~~i~~~N~~~~~~~l~~~~~~l~~~~~~l~~~ 269 (307)
T PRK07502 228 RIAASDPT-MWRDVFLHNKDAVLEMLGRFTEDLAALQRAIRWG 269 (307)
T ss_pred ccccCChH-HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 99999998 9999999999776556666655555555555433
|
|
| >PLN02712 arogenate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.27 E-value=4.5e-12 Score=146.51 Aligned_cols=242 Identities=15% Similarity=0.149 Sum_probs=148.1
Q ss_pred ceeeecCCeEEEEecChhHHHHHHHHHcCCCEEEEECCCCChhHHHHcCCccc-CHHHHhc-cCCEEEEcCCCCcccccc
Q 006864 223 VGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELV-SFDQALA-TADFISLHMPLNPTTSKI 300 (628)
Q Consensus 223 ~g~~l~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~-sl~ell~-~aDvV~l~~Plt~~t~~l 300 (628)
.|.++.+++|||||+|+||+.+|++|+++|++|++||+....+.+.+.|+... ++++++. +||+|++|+|. ..+..+
T Consensus 363 ~~~~~~~~kIgIIGlG~mG~slA~~L~~~G~~V~~~dr~~~~~~a~~~Gv~~~~~~~el~~~~aDvVILavP~-~~~~~v 441 (667)
T PLN02712 363 CVNDGSKLKIAIVGFGNFGQFLAKTMVKQGHTVLAYSRSDYSDEAQKLGVSYFSDADDLCEEHPEVILLCTSI-LSTEKV 441 (667)
T ss_pred ccCCCCCCEEEEEecCHHHHHHHHHHHHCcCEEEEEECChHHHHHHHcCCeEeCCHHHHHhcCCCEEEECCCh-HHHHHH
Confidence 46778999999999999999999999999999999998754345566776544 7888876 59999999994 567777
Q ss_pred ccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhCCC-eeEEEeeccCCCCCCCCCccccCCcEEEcCCCCCCcHHHHHH
Q 006864 301 FNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGV-VAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKEAQEG 379 (628)
Q Consensus 301 i~~~~l~~mk~gailIN~aRg~~vde~aL~~aL~~g~-i~ga~lDV~~~EP~~~~~~L~~~~nvilTPHig~~T~ea~~~ 379 (628)
+.+-.+..||+|++|+|++.++-...+++.+.+..|. +.+ +--.++.|-. ... |+.-..++.++.-....+..+
T Consensus 442 i~~l~~~~lk~g~ivvDv~SvK~~~~~~~~~~l~~~~~~v~-~HPm~G~e~~--~~G-~~~~~~lf~~~~v~~~~~~~~- 516 (667)
T PLN02712 442 LKSLPFQRLKRSTLFVDVLSVKEFPRNLFLQHLPQDFDILC-THPMFGPESG--KNG-WNNLAFVFDKVRIGSDDRRVS- 516 (667)
T ss_pred HHHHHHhcCCCCcEEEECCCccHHHHHHHHHhccCCCceEe-eCCCCCcccc--ccc-hhhhhhhccCcEeCCCcchHH-
Confidence 7765555799999999999998767777776665542 221 1112222210 001 111112222222111111211
Q ss_pred HHHHHHHHHHHHHcCCCCCCcccCCCCCcccccccccHH-HHHHHHhHHHHH-------HhcCCCCceEEE----EEEee
Q 006864 380 VAIEIAEAVVGALRGELSATAINAPMVPSEVLSELAPYV-VLAKKLGRLAVQ-------LVSGGSGIKSVK----LIYRS 447 (628)
Q Consensus 380 ~~~~~~~~i~~~l~g~~~~~~vn~p~~~~~~~~~~~p~~-~lAerlG~la~q-------L~~g~~~~~~v~----i~~~G 447 (628)
.++.+.+++..-.. . .-.++++.+|++--+. .|-.-+|....+ +.++ +++.+. .++.+
T Consensus 517 ----~~~~l~~l~~~lGa-~---vv~ms~eeHD~~~A~vShLpHlla~~L~~~~~~~~~~~~~--gfr~l~~Li~Ria~~ 586 (667)
T PLN02712 517 ----RCDSFLDIFAREGC-R---MVEMSCAEHDWHAAGSQFITHTMGRLLEKLGLESTPINTK--GYETLLNLVENTAGD 586 (667)
T ss_pred ----HHHHHHHHHHHcCC-E---EEEeCHHHHHHHHHHHHHHHHHHHHHHHHCCCcccccccH--HHHHHHHHHHhhcCC
Confidence 22233333322221 1 1156788887543221 122223443332 2233 577766 88899
Q ss_pred cCCCCCCCcccchHHHHHhhccccccCcccccchH
Q 006864 448 ARDPDDLDTRILRAMITKGIIEPISASFINLVNAD 482 (628)
Q Consensus 448 s~a~~~~~~~~~~~a~l~GlL~~~~~~~vnlvNA~ 482 (628)
++. +|++....|+.. ...|+.+......++++.
T Consensus 587 ~p~-l~~dI~~~N~~a-~~~l~~f~~~l~~~~~~l 619 (667)
T PLN02712 587 SFD-LYYGLFMYNVNA-MEQLERLDLAFESLKKQL 619 (667)
T ss_pred CHH-HHHHHHHHChHH-HHHHHHHHHHHHHHHHHH
Confidence 998 999999999888 556666655544444444
|
|
| >COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.26 E-value=7.4e-12 Score=130.39 Aligned_cols=221 Identities=25% Similarity=0.314 Sum_probs=152.9
Q ss_pred CCeEEEEecChhHHHHHHHHHcCCCEE--EEECCCC-ChhHHHHcCCcc---cCH-HHHhccCCEEEEcCCCCccccccc
Q 006864 229 GKTLAVMGFGKVGSEVARRAKGLGMNV--IAHDPYA-PADKARAVGVEL---VSF-DQALATADFISLHMPLNPTTSKIF 301 (628)
Q Consensus 229 GktiGIIGlG~IG~~vA~~l~~~G~~V--~~~d~~~-~~~~a~~~g~~~---~sl-~ell~~aDvV~l~~Plt~~t~~li 301 (628)
-++|+|+|+|.||+.+|+.++..|+.| +++|++. ....+..+|+.. .+. .+.+..||+|++++|... |..++
T Consensus 3 ~~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~lgv~d~~~~~~~~~~~~~aD~VivavPi~~-~~~~l 81 (279)
T COG0287 3 SMKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALELGVIDELTVAGLAEAAAEADLVIVAVPIEA-TEEVL 81 (279)
T ss_pred CcEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhcCcccccccchhhhhcccCCEEEEeccHHH-HHHHH
Confidence 368999999999999999999999876 5556654 334455566632 233 677888999999999654 44444
Q ss_pred cHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhCCCeeEEEeeccCCCCCC---CCCccccCCcEEEcCCCCCCcHHHHH
Q 006864 302 NDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEEPPA---KDSKLVQHENVTVTPHLGASTKEAQE 378 (628)
Q Consensus 302 ~~~~l~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~ga~lDV~~~EP~~---~~~~L~~~~nvilTPHig~~T~ea~~ 378 (628)
++....+|+|++|+|+++-+--..+++.+.+.++. .+....|+. ++.+++....+|+||.-...
T Consensus 82 -~~l~~~l~~g~iv~Dv~S~K~~v~~a~~~~~~~~~------~~vg~HPM~G~~~~~~lf~~~~~vltp~~~~~------ 148 (279)
T COG0287 82 -KELAPHLKKGAIVTDVGSVKSSVVEAMEKYLPGDV------RFVGGHPMFGPEADAGLFENAVVVLTPSEGTE------ 148 (279)
T ss_pred -HHhcccCCCCCEEEecccccHHHHHHHHHhccCCC------eeEecCCCCCCcccccccCCCEEEEcCCCCCC------
Confidence 33334799999999999988877777777664431 224456653 25689999999999986655
Q ss_pred HHHHHHHHHHHHHHcCCCCCCcccCCCCCcccccccc------cHH---HHHHHHhH------HHHHHhcCCCCceEEEE
Q 006864 379 GVAIEIAEAVVGALRGELSATAINAPMVPSEVLSELA------PYV---VLAKKLGR------LAVQLVSGGSGIKSVKL 443 (628)
Q Consensus 379 ~~~~~~~~~i~~~l~g~~~~~~vn~p~~~~~~~~~~~------p~~---~lAerlG~------la~qL~~g~~~~~~v~i 443 (628)
.+..+.+.+++.+...+ + -.++++++|++- ||+ .|+..+.. ++..++++ +++++++
T Consensus 149 ---~~~~~~~~~~~~~~ga~-~---v~~~~eeHD~~~a~vshLpH~~a~al~~~~~~~~~~~~~~~~~as~--~frd~tR 219 (279)
T COG0287 149 ---KEWVEEVKRLWEALGAR-L---VEMDAEEHDRVMAAVSHLPHAAALALANALAKLETEELLVLKLASG--GFRDITR 219 (279)
T ss_pred ---HHHHHHHHHHHHHcCCE-E---EEcChHHHhHHHHHHHHHHHHHHHHHHHHHHhcCcchhHHHhcccc--chhhHHH
Confidence 33556677777664421 1 156788888865 332 22222322 23556676 8999999
Q ss_pred EEeecCCCCCCCcccchHHHHHhhcccccc
Q 006864 444 IYRSARDPDDLDTRILRAMITKGIIEPISA 473 (628)
Q Consensus 444 ~~~Gs~a~~~~~~~~~~~a~l~GlL~~~~~ 473 (628)
++.+++. +|.+.+..+...+...++.+..
T Consensus 220 ia~~~P~-m~~dI~~~N~~~~l~~i~~~~~ 248 (279)
T COG0287 220 IASSDPE-MYADIQLSNKEALLEAIERFAK 248 (279)
T ss_pred HHcCChH-HHHHHHHhCcHHHHHHHHHHHH
Confidence 9999998 9999999998854444444433
|
|
| >PRK08655 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=7.6e-12 Score=138.43 Aligned_cols=227 Identities=20% Similarity=0.232 Sum_probs=149.9
Q ss_pred CeEEEEe-cChhHHHHHHHHHcCCCEEEEECCCCCh--hHHHHcCCccc-CHHHHhccCCEEEEcCCCCccccccccHHH
Q 006864 230 KTLAVMG-FGKVGSEVARRAKGLGMNVIAHDPYAPA--DKARAVGVELV-SFDQALATADFISLHMPLNPTTSKIFNDET 305 (628)
Q Consensus 230 ktiGIIG-lG~IG~~vA~~l~~~G~~V~~~d~~~~~--~~a~~~g~~~~-sl~ell~~aDvV~l~~Plt~~t~~li~~~~ 305 (628)
++|+||| +|.||+.+|+.|+..|++|.+||+.... ..+.+.|+... ++++.+.+||+|++|+|.. .+..++ ++.
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~G~~V~v~~r~~~~~~~~a~~~gv~~~~~~~e~~~~aDvVIlavp~~-~~~~vl-~~l 78 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEKGFEVIVTGRDPKKGKEVAKELGVEYANDNIDAAKDADIVIISVPIN-VTEDVI-KEV 78 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHCCCEEEEEECChHHHHHHHHHcCCeeccCHHHHhccCCEEEEecCHH-HHHHHH-HHH
Confidence 4799997 9999999999999999999999987532 34455676544 6888999999999999964 345554 455
Q ss_pred HhcCCCCcEEEEcCCCchhcHHHHHHHHhCCCeeEEEeeccCCCCCC-CCCccccCCcEEEcCCCCCCcHHHHHHHHHHH
Q 006864 306 FAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEEPPA-KDSKLVQHENVTVTPHLGASTKEAQEGVAIEI 384 (628)
Q Consensus 306 l~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~ga~lDV~~~EP~~-~~~~L~~~~nvilTPHig~~T~ea~~~~~~~~ 384 (628)
...+++++++++++..+....+++.+.+..+. .+....|+. +..+++....+++||+-+.. .+ .
T Consensus 79 ~~~l~~~~iViDvsSvK~~~~~~l~~~~~~~~------~~V~~HPmaGp~~~~~~g~~~il~p~~~~~-~~--------~ 143 (437)
T PRK08655 79 APHVKEGSLLMDVTSVKERPVEAMEEYAPEGV------EILPTHPMFGPRTPSLKGQVVILTPTEKRS-NP--------W 143 (437)
T ss_pred HhhCCCCCEEEEcccccHHHHHHHHHhcCCCC------EEEEcCCCCCCCCcccCCCEEEEecCCCCC-HH--------H
Confidence 56789999999999987777777777765431 223335542 23467888999999976433 22 2
Q ss_pred HHHHHHHHcCCCCCCcccCCCCCcccccccc------cHHH---HH---HHHh---HHHHHHhcCCCCceEE----EEEE
Q 006864 385 AEAVVGALRGELSATAINAPMVPSEVLSELA------PYVV---LA---KKLG---RLAVQLVSGGSGIKSV----KLIY 445 (628)
Q Consensus 385 ~~~i~~~l~g~~~~~~vn~p~~~~~~~~~~~------p~~~---lA---erlG---~la~qL~~g~~~~~~v----~i~~ 445 (628)
++.+.+++..-... ++ .++++.++++- |++. ++ .++| ..+.+++++ ++++. +++.
T Consensus 144 ~~~v~~ll~~~G~~-v~---~~~~e~HD~~~a~vs~lph~~a~al~~~l~~~g~~~~~~~~~a~~--~frd~~~~~tRIa 217 (437)
T PRK08655 144 FDKVKNFLEKEGAR-VI---VTSPEEHDRIMSVVQGLTHFAYISIASTLKRLGVDIKESRKFASP--IYELMIDIIGRIL 217 (437)
T ss_pred HHHHHHHHHHcCCE-EE---ECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhhcCh--hhHHHHHHHHHHh
Confidence 23344444332211 11 34455665543 3321 22 2223 223456666 89985 8999
Q ss_pred eecCCCCCCCcccchHHHHHhhccccccCcccccch
Q 006864 446 RSARDPDDLDTRILRAMITKGIIEPISASFINLVNA 481 (628)
Q Consensus 446 ~Gs~a~~~~~~~~~~~a~l~GlL~~~~~~~vnlvNA 481 (628)
.+++. +|.+.+..|.. +...++.+......+.++
T Consensus 218 ~~~p~-lw~dI~~~N~~-~~~~l~~~~~~l~~l~~~ 251 (437)
T PRK08655 218 GQNPY-LYASIQMNNPQ-IPEIHETFIKECEELSEL 251 (437)
T ss_pred cCCHH-HHHHHHHhCHH-HHHHHHHHHHHHHHHHHH
Confidence 99998 99999999984 555565554443344333
|
|
| >PRK08507 prephenate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.20 E-value=2.6e-11 Score=126.16 Aligned_cols=224 Identities=17% Similarity=0.242 Sum_probs=136.9
Q ss_pred CeEEEEecChhHHHHHHHHHcCCC--EEEEECCCCC-hhHHHHcCCc--ccCHHHHhccCCEEEEcCCCCccccccccHH
Q 006864 230 KTLAVMGFGKVGSEVARRAKGLGM--NVIAHDPYAP-ADKARAVGVE--LVSFDQALATADFISLHMPLNPTTSKIFNDE 304 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~G~--~V~~~d~~~~-~~~a~~~g~~--~~sl~ell~~aDvV~l~~Plt~~t~~li~~~ 304 (628)
++|+|||+|.||+.+|+.|+..|. +|++||+... .+.+.+.|+. ..+++++. +||+|++|+|... +...+ .+
T Consensus 1 m~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~~~g~~~~~~~~~~~~-~aD~Vilavp~~~-~~~~~-~~ 77 (275)
T PRK08507 1 MKIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKKALELGLVDEIVSFEELK-KCDVIFLAIPVDA-IIEIL-PK 77 (275)
T ss_pred CEEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHCCCCcccCCHHHHh-cCCEEEEeCcHHH-HHHHH-HH
Confidence 379999999999999999997774 8999998752 2344556652 33677765 4999999999543 33343 34
Q ss_pred HHhcCCCCcEEEEcCCCchhcHHHHHHHHhCCCeeEEEeeccCCCCC---------CCCCccccCCcEEEcCCCCCCcHH
Q 006864 305 TFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEEPP---------AKDSKLVQHENVTVTPHLGASTKE 375 (628)
Q Consensus 305 ~l~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~ga~lDV~~~EP~---------~~~~~L~~~~nvilTPHig~~T~e 375 (628)
... ++++++|++++.-+. .+.+.+.... . ..+....|. .+...|++...++++|+-+.. .+
T Consensus 78 l~~-l~~~~iv~d~gs~k~----~i~~~~~~~~-~---~~~v~~hPmaG~e~~Gp~~a~~~l~~g~~~il~~~~~~~-~~ 147 (275)
T PRK08507 78 LLD-IKENTTIIDLGSTKA----KIIESVPKHI-R---KNFIAAHPMAGTENSGPKAAIKGLYEGKVVVLCDVEKSG-EK 147 (275)
T ss_pred Hhc-cCCCCEEEECccchH----HHHHHHHHhc-C---CCEEecCCcCcCchhhHHhccHHHhCCCeEEEecCCCCC-HH
Confidence 445 889999999876432 2333333210 0 012223443 122246777788999965443 22
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCCcccCCCCCcccccccc------cHHHHHHHHhHH---------HHHHhcCCCCceE
Q 006864 376 AQEGVAIEIAEAVVGALRGELSATAINAPMVPSEVLSELA------PYVVLAKKLGRL---------AVQLVSGGSGIKS 440 (628)
Q Consensus 376 a~~~~~~~~~~~i~~~l~g~~~~~~vn~p~~~~~~~~~~~------p~~~lAerlG~l---------a~qL~~g~~~~~~ 440 (628)
.. ..++.+.+.+..+.. .++++.++++- |+ -++.-++.. ...+.++ +|++
T Consensus 148 ~~-----~~v~~l~~~~G~~~~-------~~~~~~hD~~~a~vs~lph-~~a~~l~~~~~~~~~~~~~~~~~~~--gfrd 212 (275)
T PRK08507 148 HQ-----ERAKEIFSGLGMRIV-------YMDAKEHDLHAAYISHLPH-IISFALANTVLKEEDERNIFDLAGG--GFRS 212 (275)
T ss_pred HH-----HHHHHHHHHhCCEEE-------EeCHHHHHHHHHHHhHHHH-HHHHHHHHHHHhcCChHHHHhhccc--chhh
Confidence 22 122333333322211 34455555533 43 222222222 2355666 8999
Q ss_pred EEEEEeecCCCCCCCcccchHHHHHhhccccccCcccccchH
Q 006864 441 VKLIYRSARDPDDLDTRILRAMITKGIIEPISASFINLVNAD 482 (628)
Q Consensus 441 v~i~~~Gs~a~~~~~~~~~~~a~l~GlL~~~~~~~vnlvNA~ 482 (628)
.+++..+++. +|.++...|+..+.-.|+.+......+.++.
T Consensus 213 ~tria~~~p~-l~~~i~~~N~~~~~~~l~~~~~~l~~~~~~l 253 (275)
T PRK08507 213 MSRLAKSSPA-MWSDIFKQNKENVLEAIDEFIKELEQFKQLI 253 (275)
T ss_pred hhhcccCCHH-HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999998 9999999998766666666655544454444
|
|
| >PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3 | Back alignment and domain information |
|---|
Probab=99.20 E-value=7.3e-11 Score=112.77 Aligned_cols=103 Identities=33% Similarity=0.516 Sum_probs=75.4
Q ss_pred eeeecCCeEEEEecChhHHHHHHHHHcCCCEEEEECCCC-ChhHHHHcCCcccCHHHHhccCCEEEEcCCCCcccccccc
Q 006864 224 GVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA-PADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFN 302 (628)
Q Consensus 224 g~~l~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~g~~~~sl~ell~~aDvV~l~~Plt~~t~~li~ 302 (628)
...+.||++.|+|||.+|+.+|++|+++|++|++++..+ ...++...|++..+++++++++|+++.++- .+.++.
T Consensus 18 ~~~l~Gk~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DPi~alqA~~dGf~v~~~~~a~~~adi~vtaTG----~~~vi~ 93 (162)
T PF00670_consen 18 NLMLAGKRVVVIGYGKVGKGIARALRGLGARVTVTEIDPIRALQAAMDGFEVMTLEEALRDADIFVTATG----NKDVIT 93 (162)
T ss_dssp -S--TTSEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTT-EEE-HHHHTTT-SEEEE-SS----SSSSB-
T ss_pred ceeeCCCEEEEeCCCcccHHHHHHHhhCCCEEEEEECChHHHHHhhhcCcEecCHHHHHhhCCEEEECCC----CccccC
Confidence 567999999999999999999999999999999998764 344566779998899999999999988754 467889
Q ss_pred HHHHhcCCCCcEEEEcCCCch-hcHHHHH
Q 006864 303 DETFAKMKKGVRIVNVARGGV-IDEEALV 330 (628)
Q Consensus 303 ~~~l~~mk~gailIN~aRg~~-vde~aL~ 330 (628)
.+.|.+||+|+++.|++.-.. +|.+.|.
T Consensus 94 ~e~~~~mkdgail~n~Gh~d~Eid~~~L~ 122 (162)
T PF00670_consen 94 GEHFRQMKDGAILANAGHFDVEIDVDALE 122 (162)
T ss_dssp HHHHHHS-TTEEEEESSSSTTSBTHHHHH
T ss_pred HHHHHHhcCCeEEeccCcCceeEeecccc
Confidence 999999999999999986443 3555433
|
3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C .... |
| >PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=99.19 E-value=3.5e-11 Score=115.67 Aligned_cols=113 Identities=22% Similarity=0.329 Sum_probs=87.5
Q ss_pred CeEEEEecChhHHHHHHHHHcCCCEEEEECCCCC-hhHHHHcCCccc-CHHHHhccCCEEEEcCCCCcccccccc-HHHH
Q 006864 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAP-ADKARAVGVELV-SFDQALATADFISLHMPLNPTTSKIFN-DETF 306 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~g~~~~-sl~ell~~aDvV~l~~Plt~~t~~li~-~~~l 306 (628)
++|||||+|.||+.+|++|...|++|.+||+... .+...+.|+..+ ++.|++++||+|++++|-.++++.++. .+.+
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~g~~~~~s~~e~~~~~dvvi~~v~~~~~v~~v~~~~~i~ 81 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSPEKAEALAEAGAEVADSPAEAAEQADVVILCVPDDDAVEAVLFGENIL 81 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSHHHHHHHHHTTEEEESSHHHHHHHBSEEEE-SSSHHHHHHHHHCTTHG
T ss_pred CEEEEEchHHHHHHHHHHHHhcCCeEEeeccchhhhhhhHHhhhhhhhhhhhHhhcccceEeecccchhhhhhhhhhHHh
Confidence 5899999999999999999999999999998752 344455676654 899999999999999997777766652 2367
Q ss_pred hcCCCCcEEEEcCCCchhcHHHHHHHHhCCCeeEEEee
Q 006864 307 AKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALD 344 (628)
Q Consensus 307 ~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~ga~lD 344 (628)
..+++|.++||++....-....+.+.+.+..+ ..+|
T Consensus 82 ~~l~~g~iiid~sT~~p~~~~~~~~~~~~~g~--~~vd 117 (163)
T PF03446_consen 82 AGLRPGKIIIDMSTISPETSRELAERLAAKGV--RYVD 117 (163)
T ss_dssp GGS-TTEEEEE-SS--HHHHHHHHHHHHHTTE--EEEE
T ss_pred hccccceEEEecCCcchhhhhhhhhhhhhccc--eeee
Confidence 88999999999999999999999999987665 4445
|
1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A .... |
| >COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.2e-10 Score=121.17 Aligned_cols=123 Identities=20% Similarity=0.237 Sum_probs=103.9
Q ss_pred CeEEEEecChhHHHHHHHHHcCCCEEEEECCCCC--hhHHHHcCCccc-CHHHHhccCCEEEEcCCCCcccccccc--HH
Q 006864 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAP--ADKARAVGVELV-SFDQALATADFISLHMPLNPTTSKIFN--DE 304 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~--~~~a~~~g~~~~-sl~ell~~aDvV~l~~Plt~~t~~li~--~~ 304 (628)
.+|||||+|.||..+|++|...|++|.+||+... .+.....|.... +..|+.++||+|++|+|..++.+..+. ..
T Consensus 1 ~kIafIGLG~MG~pmA~~L~~aG~~v~v~~r~~~ka~~~~~~~Ga~~a~s~~eaa~~aDvVitmv~~~~~V~~V~~g~~g 80 (286)
T COG2084 1 MKIAFIGLGIMGSPMAANLLKAGHEVTVYNRTPEKAAELLAAAGATVAASPAEAAAEADVVITMLPDDAAVRAVLFGENG 80 (286)
T ss_pred CeEEEEcCchhhHHHHHHHHHCCCEEEEEeCChhhhhHHHHHcCCcccCCHHHHHHhCCEEEEecCCHHHHHHHHhCccc
Confidence 4799999999999999999999999999999863 344556687655 788999999999999999999888774 67
Q ss_pred HHhcCCCCcEEEEcCCCchhcHHHHHHHHhCCCeeEEEeeccCCCCCC
Q 006864 305 TFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEEPPA 352 (628)
Q Consensus 305 ~l~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~ga~lDV~~~EP~~ 352 (628)
.++.||+|.++||++.........+.+++++..+...---|.+..+..
T Consensus 81 ~~~~~~~G~i~IDmSTisp~~a~~~a~~~~~~G~~~lDAPVsGg~~~A 128 (286)
T COG2084 81 LLEGLKPGAIVIDMSTISPETARELAAALAAKGLEFLDAPVSGGVPGA 128 (286)
T ss_pred hhhcCCCCCEEEECCCCCHHHHHHHHHHHHhcCCcEEecCccCCchhh
Confidence 899999999999999999999999999999987743322366666543
|
|
| >PRK11559 garR tartronate semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.2e-10 Score=122.16 Aligned_cols=121 Identities=16% Similarity=0.264 Sum_probs=96.8
Q ss_pred CeEEEEecChhHHHHHHHHHcCCCEEEEECCCCC-hhHHHHcCCccc-CHHHHhccCCEEEEcCCCCcccccccc--HHH
Q 006864 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAP-ADKARAVGVELV-SFDQALATADFISLHMPLNPTTSKIFN--DET 305 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~g~~~~-sl~ell~~aDvV~l~~Plt~~t~~li~--~~~ 305 (628)
++|||||+|.||+.+|+.+...|++|++||++.. .+...+.|+..+ ++++++++||+|++|+|....++.++. .+.
T Consensus 3 ~~IgviG~G~mG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~~g~~~~~~~~e~~~~~d~vi~~vp~~~~~~~v~~~~~~~ 82 (296)
T PRK11559 3 MKVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNPEAVAEVIAAGAETASTAKAVAEQCDVIITMLPNSPHVKEVALGENGI 82 (296)
T ss_pred ceEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCeecCCHHHHHhcCCEEEEeCCCHHHHHHHHcCcchH
Confidence 5799999999999999999999999999998753 233455566544 789999999999999998877777653 346
Q ss_pred HhcCCCCcEEEEcCCCchhcHHHHHHHHhCCCeeEEEeeccCCCC
Q 006864 306 FAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEEP 350 (628)
Q Consensus 306 l~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~ga~lDV~~~EP 350 (628)
+..+++|.++||+++......+++.+.+++..+...--.|+..+|
T Consensus 83 ~~~~~~g~iiid~st~~~~~~~~l~~~~~~~g~~~~d~pv~g~~~ 127 (296)
T PRK11559 83 IEGAKPGTVVIDMSSIAPLASREIAAALKAKGIEMLDAPVSGGEP 127 (296)
T ss_pred hhcCCCCcEEEECCCCCHHHHHHHHHHHHHcCCcEEEcCCCCCHH
Confidence 778999999999999999888899999887655333333555554
|
|
| >TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.8e-10 Score=120.65 Aligned_cols=108 Identities=19% Similarity=0.261 Sum_probs=89.9
Q ss_pred eEEEEecChhHHHHHHHHHcCCCEEEEECCCCC-hhHHHHcCCcc-cCHHHHhccCCEEEEcCCCCccccccc-c-HHHH
Q 006864 231 TLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAP-ADKARAVGVEL-VSFDQALATADFISLHMPLNPTTSKIF-N-DETF 306 (628)
Q Consensus 231 tiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~g~~~-~sl~ell~~aDvV~l~~Plt~~t~~li-~-~~~l 306 (628)
+|||||+|.||+.+|++|...|++|.+||+... .+...+.|... .+.++++++||+|++|+|..+.++.++ + ...+
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~v~~~~~~~~ 80 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGPEVADELLAAGAVTAETARQVTEQADVIFTMVPDSPQVEEVAFGENGII 80 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCcccCCHHHHHhcCCEEEEecCCHHHHHHHHcCcchHh
Confidence 589999999999999999999999999998752 23344556543 478899999999999999877777664 3 3467
Q ss_pred hcCCCCcEEEEcCCCchhcHHHHHHHHhCCCe
Q 006864 307 AKMKKGVRIVNVARGGVIDEEALVRALDSGVV 338 (628)
Q Consensus 307 ~~mk~gailIN~aRg~~vde~aL~~aL~~g~i 338 (628)
..+++|+++||++++...+.+++.+.+++..+
T Consensus 81 ~~~~~g~iivd~st~~~~~~~~l~~~l~~~g~ 112 (291)
T TIGR01505 81 EGAKPGKTLVDMSSISPIESKRFAKAVKEKGI 112 (291)
T ss_pred hcCCCCCEEEECCCCCHHHHHHHHHHHHHcCC
Confidence 78999999999999999999999999987644
|
This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism. |
| >PRK05479 ketol-acid reductoisomerase; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=2.3e-10 Score=121.53 Aligned_cols=121 Identities=25% Similarity=0.368 Sum_probs=90.1
Q ss_pred eeecCCeEEEEecChhHHHHHHHHHcCCCEEEEECCCC--ChhHHHHcCCcccCHHHHhccCCEEEEcCCCCcccccccc
Q 006864 225 VSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA--PADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFN 302 (628)
Q Consensus 225 ~~l~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~--~~~~a~~~g~~~~sl~ell~~aDvV~l~~Plt~~t~~li~ 302 (628)
..|+||+|||||+|+||+++|+.|+.+|++|+++++.. ....+.+.|+...+.++++++||+|++++|.+.. ..+++
T Consensus 13 ~~L~gktIgIIG~GsmG~AlA~~L~~sG~~Vvv~~r~~~~s~~~A~~~G~~~~s~~eaa~~ADVVvLaVPd~~~-~~V~~ 91 (330)
T PRK05479 13 SLIKGKKVAIIGYGSQGHAHALNLRDSGVDVVVGLREGSKSWKKAEADGFEVLTVAEAAKWADVIMILLPDEVQ-AEVYE 91 (330)
T ss_pred hhhCCCEEEEEeeHHHHHHHHHHHHHCCCEEEEEECCchhhHHHHHHCCCeeCCHHHHHhcCCEEEEcCCHHHH-HHHHH
Confidence 46899999999999999999999999999999886643 3345566788777999999999999999996654 67777
Q ss_pred HHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhCCCeeEEEeeccCCCCCCCCC
Q 006864 303 DETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEEPPAKDS 355 (628)
Q Consensus 303 ~~~l~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~ga~lDV~~~EP~~~~~ 355 (628)
++.+..|++|++| -.+.|--+ ..+. ..-+...||+-..|..+.+
T Consensus 92 ~~I~~~Lk~g~iL-~~a~G~~i--~~~~------~~p~~~~~Vi~vaPn~Pg~ 135 (330)
T PRK05479 92 EEIEPNLKEGAAL-AFAHGFNI--HFGQ------IVPPADVDVIMVAPKGPGH 135 (330)
T ss_pred HHHHhcCCCCCEE-EECCCCCh--hhce------eccCCCCcEEEeCCCCCch
Confidence 7888899999988 44445211 1110 1113445777777654333
|
|
| >PLN02712 arogenate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.04 E-value=3.1e-10 Score=131.42 Aligned_cols=238 Identities=16% Similarity=0.154 Sum_probs=146.6
Q ss_pred ecCCeEEEEecChhHHHHHHHHHcCCCEEEEECCCCChhHHHHcCCccc-CHHHHh-ccCCEEEEcCCCCccccccccHH
Q 006864 227 LVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELV-SFDQAL-ATADFISLHMPLNPTTSKIFNDE 304 (628)
Q Consensus 227 l~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~-sl~ell-~~aDvV~l~~Plt~~t~~li~~~ 304 (628)
-+.++|||||+|+||+.+|+.|+.+|++|++||+......+.+.|+... ++++++ .+||+|++|+|. ..+..++..-
T Consensus 50 ~~~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~~~~~A~~~Gv~~~~d~~e~~~~~aDvViLavP~-~~~~~vl~~l 128 (667)
T PLN02712 50 TTQLKIAIIGFGNYGQFLAKTLISQGHTVLAHSRSDHSLAARSLGVSFFLDPHDLCERHPDVILLCTSI-ISTENVLKSL 128 (667)
T ss_pred CCCCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHcCCEEeCCHHHHhhcCCCEEEEcCCH-HHHHHHHHhh
Confidence 3457899999999999999999999999999998755555667787544 788866 569999999995 4577777664
Q ss_pred HHhcCCCCcEEEEcCCCchhcHHHHHHHHhCCCeeEEEeeccCCCCCCC----CCccccCCcEEEcCCCCCCcHHHHHHH
Q 006864 305 TFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEEPPAK----DSKLVQHENVTVTPHLGASTKEAQEGV 380 (628)
Q Consensus 305 ~l~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~ga~lDV~~~EP~~~----~~~L~~~~nvilTPHig~~T~ea~~~~ 380 (628)
.+..||++++|+|+++-+..-.+++.+.+..+. ++....|+.. .+. |..-.++++|.+.....+..+.+
T Consensus 129 ~~~~l~~g~iVvDv~SvK~~~~~~l~~~l~~~~------~~v~~HPMaG~e~~~~g-~~~~~~~~~~~~~~~~~~~~~~~ 201 (667)
T PLN02712 129 PLQRLKRNTLFVDVLSVKEFAKNLLLDYLPEDF------DIICSHPMFGPQSAKHG-WDGLRFVYEKVRIGNEELRVSRC 201 (667)
T ss_pred hhhcCCCCeEEEECCCCcHHHHHHHHHhcCCCC------eEEeeCCcCCCccccch-hccCcEEEeeccCCCccccHHHH
Confidence 456799999999999877655566666665442 2233344421 112 22234778876543222111111
Q ss_pred HHHHHHHHHHHHcCCCCCCcccCCCCCcccccccccHH-HHHHHHhHHHHHHhcCCCCc---------eEEEEEEeecCC
Q 006864 381 AIEIAEAVVGALRGELSATAINAPMVPSEVLSELAPYV-VLAKKLGRLAVQLVSGGSGI---------KSVKLIYRSARD 450 (628)
Q Consensus 381 ~~~~~~~i~~~l~g~~~~~~vn~p~~~~~~~~~~~p~~-~lAerlG~la~qL~~g~~~~---------~~v~i~~~Gs~a 450 (628)
....++...+..+.. .++++.+|++.-++ .|-.-+|+.+..+.-+..++ +-+++++.+++.
T Consensus 202 --~~l~~l~~~lGa~v~-------~ms~eeHD~~~A~vshLpH~la~~L~~~~~~~~~~~~~~~~~~l~l~~Ria~~~p~ 272 (667)
T PLN02712 202 --KSFLEVFEREGCKMV-------EMSCTEHDKYAAESQFITHTVGRVLEMLKLESTPINTKGYESLLDLVENTCGDSFD 272 (667)
T ss_pred --HHHHHHHHHcCCEEE-------EeCHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCccHHHHHHHHHHHhcCCHH
Confidence 111233333322222 56778887755322 22223444433322100011 113556778887
Q ss_pred CCCCCcccchHHHHHhhccccccCcccccchHh
Q 006864 451 PDDLDTRILRAMITKGIIEPISASFINLVNADF 483 (628)
Q Consensus 451 ~~~~~~~~~~~a~l~GlL~~~~~~~vnlvNA~~ 483 (628)
+|++....|+.+ ...|+.+..+...++.+.+
T Consensus 273 -L~~dI~~~N~~~-~~~l~~~~~~l~~~~~~l~ 303 (667)
T PLN02712 273 -LYYGLFMYNKNS-LEMLERLDLAFEALRKQLF 303 (667)
T ss_pred -HHHHHHHhCHHH-HHHHHHHHHHHHHHHHHHH
Confidence 999999999944 4467677666556666654
|
|
| >PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=8.2e-10 Score=116.30 Aligned_cols=113 Identities=18% Similarity=0.281 Sum_probs=93.0
Q ss_pred CeEEEEecChhHHHHHHHHHcCCCEEEEECCCCCh-hHHHHcCCcc-cCHHHHhccCCEEEEcCCCCcccccccc--HHH
Q 006864 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPA-DKARAVGVEL-VSFDQALATADFISLHMPLNPTTSKIFN--DET 305 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~~g~~~-~sl~ell~~aDvV~l~~Plt~~t~~li~--~~~ 305 (628)
++|||||+|.||..+|++|...|++|.+||+.... +...+.|... .+..+++++||+|++|+|....++..+. ...
T Consensus 2 ~~Ig~IGlG~mG~~mA~~l~~~G~~V~v~d~~~~~~~~~~~~g~~~~~s~~~~~~~aDvVi~~vp~~~~~~~vl~~~~~i 81 (296)
T PRK15461 2 AAIAFIGLGQMGSPMASNLLKQGHQLQVFDVNPQAVDALVDKGATPAASPAQAAAGAEFVITMLPNGDLVRSVLFGENGV 81 (296)
T ss_pred CeEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcCCcccCCHHHHHhcCCEEEEecCCHHHHHHHHcCcccH
Confidence 47999999999999999999999999999987532 3334456543 4788999999999999997766666653 346
Q ss_pred HhcCCCCcEEEEcCCCchhcHHHHHHHHhCCCeeEEEee
Q 006864 306 FAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALD 344 (628)
Q Consensus 306 l~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~ga~lD 344 (628)
+..+++|.++||++++.....+.+.+.+.+..+. .+|
T Consensus 82 ~~~l~~g~lvid~sT~~p~~~~~l~~~l~~~g~~--~ld 118 (296)
T PRK15461 82 CEGLSRDALVIDMSTIHPLQTDKLIADMQAKGFS--MMD 118 (296)
T ss_pred hhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCc--EEE
Confidence 7779999999999999999999999999887764 455
|
|
| >cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy) | Back alignment and domain information |
|---|
Probab=99.03 E-value=9.3e-10 Score=120.38 Aligned_cols=104 Identities=29% Similarity=0.450 Sum_probs=89.5
Q ss_pred eeeecCCeEEEEecChhHHHHHHHHHcCCCEEEEECCCC-ChhHHHHcCCcccCHHHHhccCCEEEEcCCCCcccccccc
Q 006864 224 GVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA-PADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFN 302 (628)
Q Consensus 224 g~~l~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~g~~~~sl~ell~~aDvV~l~~Plt~~t~~li~ 302 (628)
+..+.|++++|+|+|.||+.+|++++++|++|+++|+.. ....+...|+..+++++.+..+|+|+.+.. +.+.++
T Consensus 197 ~~~l~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~~G~~~~~~~e~v~~aDVVI~atG----~~~~i~ 272 (413)
T cd00401 197 DVMIAGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAAMEGYEVMTMEEAVKEGDIFVTTTG----NKDIIT 272 (413)
T ss_pred CCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHHhcCCEEccHHHHHcCCCEEEECCC----CHHHHH
Confidence 556899999999999999999999999999999998765 345677789877788899999999998753 467888
Q ss_pred HHHHhcCCCCcEEEEcCCCch-hcHHHHHH
Q 006864 303 DETFAKMKKGVRIVNVARGGV-IDEEALVR 331 (628)
Q Consensus 303 ~~~l~~mk~gailIN~aRg~~-vde~aL~~ 331 (628)
...|..||+|++++|++++.+ +|..+|..
T Consensus 273 ~~~l~~mk~GgilvnvG~~~~eId~~~L~~ 302 (413)
T cd00401 273 GEHFEQMKDGAIVCNIGHFDVEIDVKGLKE 302 (413)
T ss_pred HHHHhcCCCCcEEEEeCCCCCccCHHHHHh
Confidence 888999999999999999876 77777654
|
The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+. |
| >PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=3.2e-10 Score=123.19 Aligned_cols=215 Identities=14% Similarity=0.108 Sum_probs=137.7
Q ss_pred cCCeEEEEe-cChhHHHHHHHHHcCCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEcCCCCccccccccHHHH
Q 006864 228 VGKTLAVMG-FGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETF 306 (628)
Q Consensus 228 ~GktiGIIG-lG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~sl~ell~~aDvV~l~~Plt~~t~~li~~~~l 306 (628)
..++|+||| +|.||+.+|+.|+..|..|.+||+... .+.++++++||+|++|+|... +..++ ++ +
T Consensus 97 ~~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~~~-----------~~~~~~~~~aDlVilavP~~~-~~~~~-~~-l 162 (374)
T PRK11199 97 DLRPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQDDW-----------DRAEDILADAGMVIVSVPIHL-TEEVI-AR-L 162 (374)
T ss_pred ccceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCCcc-----------hhHHHHHhcCCEEEEeCcHHH-HHHHH-HH-H
Confidence 458999999 999999999999999999999997521 246778899999999999664 44455 33 4
Q ss_pred hcCCCCcEEEEcCCCchhcHHHHHHHHhCCCeeEEEeeccCCCCCCC-CCccccCCcEEEcCCCCCCcHHHHHHHHHHHH
Q 006864 307 AKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEEPPAK-DSKLVQHENVTVTPHLGASTKEAQEGVAIEIA 385 (628)
Q Consensus 307 ~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~ga~lDV~~~EP~~~-~~~L~~~~nvilTPHig~~T~ea~~~~~~~~~ 385 (628)
..+++|++|+++++.+..-.+++.+.+. +.+ .+..|+.. ....+....++++|+ ...++.+ .+
T Consensus 163 ~~l~~~~iv~Dv~SvK~~~~~~~~~~~~-~~f-------vg~HPm~G~~~~~~~~~~vv~~~~---~~~~~~~-----~~ 226 (374)
T PRK11199 163 PPLPEDCILVDLTSVKNAPLQAMLAAHS-GPV-------LGLHPMFGPDVGSLAKQVVVVCDG---RQPEAYQ-----WL 226 (374)
T ss_pred hCCCCCcEEEECCCccHHHHHHHHHhCC-CCE-------EeeCCCCCCCCcccCCCEEEEcCC---CCchHHH-----HH
Confidence 4489999999999876655555555433 222 33344321 122345556788774 2233322 23
Q ss_pred HHHHHHHcCCCCCCcccCCCCCcccccccc------cHHH-HH--HHHh------HHHHHHhcCCCCceE----EEEEEe
Q 006864 386 EAVVGALRGELSATAINAPMVPSEVLSELA------PYVV-LA--KKLG------RLAVQLVSGGSGIKS----VKLIYR 446 (628)
Q Consensus 386 ~~i~~~l~g~~~~~~vn~p~~~~~~~~~~~------p~~~-lA--erlG------~la~qL~~g~~~~~~----v~i~~~ 446 (628)
..+...+..... .++++.++++- |++. ++ ..++ .....+.++ ++++ +++++.
T Consensus 227 ~~l~~~lG~~v~-------~~~~~~HD~~~a~vshLpH~~a~al~~~l~~~~~~~~~~~~~~~~--~fr~~la~~tRia~ 297 (374)
T PRK11199 227 LEQIQVWGARLH-------RISAVEHDQNMAFIQALRHFATFAYGLHLAKENVDLEQLLALSSP--IYRLELAMVGRLFA 297 (374)
T ss_pred HHHHHHCCCEEE-------ECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHhcCh--HHHHHHHHHHHHHc
Confidence 344444432222 56677777644 3221 11 1111 001123344 6888 899999
Q ss_pred ecCCCCCCCcccchHHHHHhhccccccCcccccchHh
Q 006864 447 SARDPDDLDTRILRAMITKGIIEPISASFINLVNADF 483 (628)
Q Consensus 447 Gs~a~~~~~~~~~~~a~l~GlL~~~~~~~vnlvNA~~ 483 (628)
+++. +|.++...|+..+ ..|+.+......+.++..
T Consensus 298 ~~p~-lw~dI~~~N~~~~-~~l~~~~~~l~~l~~~l~ 332 (374)
T PRK11199 298 QDPQ-LYADIIMSSPENL-ALIKRYYQRFGEALELLE 332 (374)
T ss_pred CCHH-HHHHHHHhChhHH-HHHHHHHHHHHHHHHHHH
Confidence 9998 9999999988877 677666665555555554
|
|
| >PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.3e-09 Score=114.96 Aligned_cols=111 Identities=20% Similarity=0.334 Sum_probs=92.1
Q ss_pred eEEEEecChhHHHHHHHHHcCCCEEEEECCCCC-hhHHHHcCCccc-CHHHHhcc---CCEEEEcCCCCccccccccHHH
Q 006864 231 TLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAP-ADKARAVGVELV-SFDQALAT---ADFISLHMPLNPTTSKIFNDET 305 (628)
Q Consensus 231 tiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~g~~~~-sl~ell~~---aDvV~l~~Plt~~t~~li~~~~ 305 (628)
+|||||+|+||+.+|++|...|++|.+||+... .+...+.|+... ++++++++ +|+|++|+|..+.++.++ .+.
T Consensus 2 ~Ig~IGlG~mG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g~~~~~s~~~~~~~~~~advVi~~vp~~~~~~~v~-~~i 80 (299)
T PRK12490 2 KLGLIGLGKMGGNMAERLREDGHEVVGYDVNQEAVDVAGKLGITARHSLEELVSKLEAPRTIWVMVPAGEVTESVI-KDL 80 (299)
T ss_pred EEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHCCCeecCCHHHHHHhCCCCCEEEEEecCchHHHHHH-HHH
Confidence 699999999999999999999999999998752 233445566544 78888876 699999999776777777 456
Q ss_pred HhcCCCCcEEEEcCCCchhcHHHHHHHHhCCCeeEEEee
Q 006864 306 FAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALD 344 (628)
Q Consensus 306 l~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~ga~lD 344 (628)
+..+++|.++||+++....+...+.+.+.+..+ ..+|
T Consensus 81 ~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~--~~vd 117 (299)
T PRK12490 81 YPLLSPGDIVVDGGNSRYKDDLRRAEELAERGI--HYVD 117 (299)
T ss_pred hccCCCCCEEEECCCCCchhHHHHHHHHHHcCC--eEEe
Confidence 777999999999999999999999999987665 3466
|
|
| >PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.1e-09 Score=128.74 Aligned_cols=212 Identities=19% Similarity=0.212 Sum_probs=139.0
Q ss_pred CeEEEEecChhHHHHHHHHHcCC--CEEEEECCCCC-hhHHHHcCCc---ccCHHHHhccCCEEEEcCCCCccccccccH
Q 006864 230 KTLAVMGFGKVGSEVARRAKGLG--MNVIAHDPYAP-ADKARAVGVE---LVSFDQALATADFISLHMPLNPTTSKIFND 303 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~G--~~V~~~d~~~~-~~~a~~~g~~---~~sl~ell~~aDvV~l~~Plt~~t~~li~~ 303 (628)
++|||||+|.||+++|+.++..| .+|++||+... .+.+.+.|+. ..++++++++||+|++|+|.. .....+ +
T Consensus 4 ~~I~IIG~G~mG~ala~~l~~~G~~~~V~~~d~~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvVilavp~~-~~~~vl-~ 81 (735)
T PRK14806 4 GRVVVIGLGLIGGSFAKALRERGLAREVVAVDRRAKSLELAVSLGVIDRGEEDLAEAVSGADVIVLAVPVL-AMEKVL-A 81 (735)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCCEEEEEECChhHHHHHHHCCCCCcccCCHHHHhcCCCEEEECCCHH-HHHHHH-H
Confidence 78999999999999999999888 58999998753 3445556653 336888899999999999953 233333 2
Q ss_pred HHHhcCCCCcEEEEcCCCchhcHHHHHHHHhCCCeeEEEeeccCCCCCC---------CCCccccCCcEEEcCCCCCCcH
Q 006864 304 ETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEEPPA---------KDSKLVQHENVTVTPHLGASTK 374 (628)
Q Consensus 304 ~~l~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~ga~lDV~~~EP~~---------~~~~L~~~~nvilTPHig~~T~ 374 (628)
+....++++++|++++..+....+.+.+.+.... ..+..+.|.. .+..||...+++++|+-... .
T Consensus 82 ~l~~~~~~~~ii~d~~svk~~~~~~l~~~~~~~~-----~r~~~~hPm~G~~~~g~~~a~~~l~~~~~~~~~~~~~~~-~ 155 (735)
T PRK14806 82 DLKPLLSEHAIVTDVGSTKGNVVDAARAVFGELP-----AGFVPGHPIAGSEKSGVHAANADLFRNHKVILTPLAETD-P 155 (735)
T ss_pred HHHHhcCCCcEEEEcCCCchHHHHHHHHhccccC-----CeEEecCCcCcCCcchhhhhhhHHhCCCeEEEECCCCCC-H
Confidence 3334578899999999877555566666654322 2345556542 24478899999999986654 2
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCcccCCCCCcccccccc------cH---HHHHHHHh-----HHHHHHhcCCCCceE
Q 006864 375 EAQEGVAIEIAEAVVGALRGELSATAINAPMVPSEVLSELA------PY---VVLAKKLG-----RLAVQLVSGGSGIKS 440 (628)
Q Consensus 375 ea~~~~~~~~~~~i~~~l~g~~~~~~vn~p~~~~~~~~~~~------p~---~~lAerlG-----~la~qL~~g~~~~~~ 440 (628)
+..+ .++++.+-+ |..+ + .++++.+|.+- |+ ..+++.+. ..+..++++ ++++
T Consensus 156 ~~~~-----~~~~l~~~~-G~~~---~---~~~~~~hD~~~a~~~~~ph~~~~~l~~~l~~~~~~~~~~~~a~~--~f~~ 221 (735)
T PRK14806 156 AALA-----RVDRLWRAV-GADV---L---HMDVAHHDEVLAATSHLPHLLAFSLVDQLANREDNLDIFRYAAG--GFRD 221 (735)
T ss_pred HHHH-----HHHHHHHHc-CCEE---E---EcCHHHHhHHHHHhcchHHHHHHHHHHHHhhcCChhHHHhhhcc--chhc
Confidence 2222 223333322 2211 1 33455555542 43 12333331 234567777 8999
Q ss_pred EEEEEeecCCCCCCCcccchHHHH
Q 006864 441 VKLIYRSARDPDDLDTRILRAMIT 464 (628)
Q Consensus 441 v~i~~~Gs~a~~~~~~~~~~~a~l 464 (628)
.++...+++. +|.+....+...+
T Consensus 222 ~tRia~~~p~-~~~di~~~n~~~~ 244 (735)
T PRK14806 222 FTRIAASDPV-MWHDIFLANKEAV 244 (735)
T ss_pred ccccccCCHH-HHHHHHHHhHHHH
Confidence 9999999988 9999988887654
|
|
| >PF03315 SDH_beta: Serine dehydratase beta chain; InterPro: IPR005131 L-serine dehydratase is found as a heterodimer of alpha and beta chain or as a fusion of the two chains in a single protein | Back alignment and domain information |
|---|
Probab=98.97 E-value=3.3e-10 Score=108.43 Aligned_cols=116 Identities=8% Similarity=-0.021 Sum_probs=76.2
Q ss_pred HHHHhHHHHHHhcCC---CCceEEEEEEeecCCCCCCCcccchHHHHHhhccccccCccccc------------chHhHH
Q 006864 421 AKKLGRLAVQLVSGG---SGIKSVKLIYRSARDPDDLDTRILRAMITKGIIEPISASFINLV------------NADFTA 485 (628)
Q Consensus 421 AerlG~la~qL~~g~---~~~~~v~i~~~Gs~a~~~~~~~~~~~a~l~GlL~~~~~~~vnlv------------NA~~iA 485 (628)
.-|+|+.++|++.+. ..+.+|++.++||++ .|+++|++|+|++.||| ++..+++++. |.+.++
T Consensus 20 pmra~~~f~~~l~~~~~l~~~~~v~v~l~GSla-~Tg~GHgTD~Av~~GLl-G~~p~~~~~~~~~~~~~~~~~~~~L~l~ 97 (157)
T PF03315_consen 20 PMRAARRFRQLLGEQGLLPQVARVRVDLYGSLA-ATGKGHGTDRAVLAGLL-GEDPEDVDPDSIPERLERIREENRLRLA 97 (157)
T ss_dssp HHHHHHHHHHHHHHTT-TTT--EEEEEEEHHHH-HT-TTSSHHHHHHHHCT-T--TTTS-GGGHHHHHHHHHHHTEEEET
T ss_pred HHHHHHHHHHHHHhcCCCCCcEEEEEEeechhH-HhCCCcccchhheeccc-ccCCcccchhhhHHHHHHhhcCCEEEEC
Confidence 347888888888652 148999999999999 99999999999999999 5566668888 444444
Q ss_pred hhcCceEE------EEEeecCCCCCCCCceEEEEEEecccccceeeCCCcEEEEEEEEEC-CeeEEEEECc
Q 006864 486 KQKGLRIS------EERVVADSSPEFPIDSIQVQLSNVDSKFAAAVSENGEISIEGKVKF-GIPHLTRVGS 549 (628)
Q Consensus 486 ke~GI~i~------~~~~~~~~~~~~~~ntv~v~l~~~~~~~~~~~~~~~~~~v~Gt~~g-G~~~I~~Idg 549 (628)
.++.|.+. |.... ....|||++++++.+ ..++..+++.+.|+| |.+++.+++|
T Consensus 98 ~~~~i~f~~~~dI~f~~~~---~~~~HPNtm~~~a~d--------~~g~~~~~~t~ySIGGGfI~~~~~~~ 157 (157)
T PF03315_consen 98 GEREIPFDPERDIIFHPEE---FLPFHPNTMRFEAYD--------ADGGELLEETYYSIGGGFIVIEEENG 157 (157)
T ss_dssp TTEEEE--HHHHEEEETT------SS-SSEEEEEEE---------TTS-EEEEEEEEEETTTEEEETTTT-
T ss_pred CCcccccccCCCeEEEecc---CCCCCCCEEEEEEEe--------CCCCEEEEEEEEEeCCeEEEEeeecC
Confidence 44443333 22211 123799999999973 133356899999998 7888876654
|
This enzyme catalyses the deamination of serine to form pyruvate and is part of the gluconeogenesis pathway.; GO: 0003941 L-serine ammonia-lyase activity, 0051539 4 iron, 4 sulfur cluster binding, 0006094 gluconeogenesis; PDB: 2IQQ_A 2IAF_A. |
| >PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed | Back alignment and domain information |
|---|
Probab=98.93 E-value=4.4e-09 Score=110.97 Aligned_cols=112 Identities=20% Similarity=0.272 Sum_probs=92.6
Q ss_pred CeEEEEecChhHHHHHHHHHcCCCEEEEECCCCC-hhHHHHcCCccc-CHHHHhcc---CCEEEEcCCCCccccccccHH
Q 006864 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAP-ADKARAVGVELV-SFDQALAT---ADFISLHMPLNPTTSKIFNDE 304 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~g~~~~-sl~ell~~---aDvV~l~~Plt~~t~~li~~~ 304 (628)
++|||||+|.||+.+|++|...|.+|.+||++.. .+...+.|+... +++++++. +|+|++++|..+.++.++ ..
T Consensus 1 m~Ig~IGlG~MG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g~~~~~~~~e~~~~~~~~dvvi~~v~~~~~~~~v~-~~ 79 (301)
T PRK09599 1 MQLGMIGLGRMGGNMARRLLRGGHEVVGYDRNPEAVEALAEEGATGADSLEELVAKLPAPRVVWLMVPAGEITDATI-DE 79 (301)
T ss_pred CEEEEEcccHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHCCCeecCCHHHHHhhcCCCCEEEEEecCCcHHHHHH-HH
Confidence 3799999999999999999999999999999853 233455676655 78888876 699999999776677766 46
Q ss_pred HHhcCCCCcEEEEcCCCchhcHHHHHHHHhCCCeeEEEee
Q 006864 305 TFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALD 344 (628)
Q Consensus 305 ~l~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~ga~lD 344 (628)
.+..+++|.++||++++.......+.+.+++..+. .+|
T Consensus 80 l~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~--~~d 117 (301)
T PRK09599 80 LAPLLSPGDIVIDGGNSYYKDDIRRAELLAEKGIH--FVD 117 (301)
T ss_pred HHhhCCCCCEEEeCCCCChhHHHHHHHHHHHcCCE--EEe
Confidence 67789999999999999999999999999887763 446
|
|
| >PRK15059 tartronate semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=6.5e-09 Score=109.36 Aligned_cols=108 Identities=19% Similarity=0.253 Sum_probs=89.0
Q ss_pred eEEEEecChhHHHHHHHHHcCCCEEEEECCCCChhHHHHcCCccc-CHHHHhccCCEEEEcCCCCcccccccc--HHHHh
Q 006864 231 TLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELV-SFDQALATADFISLHMPLNPTTSKIFN--DETFA 307 (628)
Q Consensus 231 tiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~-sl~ell~~aDvV~l~~Plt~~t~~li~--~~~l~ 307 (628)
+|||||+|+||+.+|++|...|++|.+||+....+...+.|...+ +..+++++||+|++++|-.++.+..+. ...+.
T Consensus 2 ~Ig~IGlG~MG~~ma~~L~~~G~~v~v~~~~~~~~~~~~~g~~~~~s~~~~~~~advVi~~v~~~~~v~~v~~~~~g~~~ 81 (292)
T PRK15059 2 KLGFIGLGIMGTPMAINLARAGHQLHVTTIGPVADELLSLGAVSVETARQVTEASDIIFIMVPDTPQVEEVLFGENGCTK 81 (292)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCeEEEEeCCHhHHHHHHcCCeecCCHHHHHhcCCEEEEeCCChHHHHHHHcCCcchhc
Confidence 699999999999999999999999999998754444455666543 788999999999999997776666552 23567
Q ss_pred cCCCCcEEEEcCCCchhcHHHHHHHHhCCCe
Q 006864 308 KMKKGVRIVNVARGGVIDEEALVRALDSGVV 338 (628)
Q Consensus 308 ~mk~gailIN~aRg~~vde~aL~~aL~~g~i 338 (628)
.+++|.++||++....-....+.+.+.+..+
T Consensus 82 ~~~~g~ivvd~sT~~p~~~~~~~~~~~~~G~ 112 (292)
T PRK15059 82 ASLKGKTIVDMSSISPIETKRFARQVNELGG 112 (292)
T ss_pred cCCCCCEEEECCCCCHHHHHHHHHHHHHcCC
Confidence 7899999999999999988889898877644
|
|
| >PLN02350 phosphogluconate dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.3e-08 Score=113.84 Aligned_cols=140 Identities=11% Similarity=0.121 Sum_probs=108.6
Q ss_pred CeEEEEecChhHHHHHHHHHcCCCEEEEECCCCCh-hHHHH----cCCc----ccCHHHHhcc---CCEEEEcCCCCccc
Q 006864 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPA-DKARA----VGVE----LVSFDQALAT---ADFISLHMPLNPTT 297 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~----~g~~----~~sl~ell~~---aDvV~l~~Plt~~t 297 (628)
.+|||||+|.||+.+|++|...|++|.+||+.... +...+ .|.. ..+++|+++. +|+|++++|-.+.+
T Consensus 7 ~~IG~IGLG~MG~~mA~nL~~~G~~V~V~NRt~~k~~~l~~~~~~~Ga~~~~~a~s~~e~v~~l~~~dvIi~~v~~~~aV 86 (493)
T PLN02350 7 SRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGNLPLYGFKDPEDFVLSIQKPRSVIILVKAGAPV 86 (493)
T ss_pred CCEEEEeeHHHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhhhcCCcccccCCCHHHHHhcCCCCCEEEEECCCcHHH
Confidence 36999999999999999999999999999997532 22222 1532 3378888876 99999999988888
Q ss_pred cccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhCCCeeEEEeeccCCCCCCCCCccccCCcEEEcCCCCCCcHHHH
Q 006864 298 SKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKEAQ 377 (628)
Q Consensus 298 ~~li~~~~l~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~ga~lDV~~~EP~~~~~~L~~~~nvilTPHig~~T~ea~ 377 (628)
..++ ...+..|++|.++||++....-+...+.+.+++..+.....=|++.++..... + .+ +.+.+.+++
T Consensus 87 ~~Vi-~gl~~~l~~G~iiID~sT~~~~~t~~~~~~l~~~Gi~fldapVSGG~~gA~~G-----~-~i----m~GG~~~a~ 155 (493)
T PLN02350 87 DQTI-KALSEYMEPGDCIIDGGNEWYENTERRIKEAAEKGLLYLGMGVSGGEEGARNG-----P-SL----MPGGSFEAY 155 (493)
T ss_pred HHHH-HHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEeCCCcCCHHHhcCC-----C-eE----EecCCHHHH
Confidence 8887 56788899999999999999999999999999887766666688887643222 3 22 234566666
Q ss_pred HHH
Q 006864 378 EGV 380 (628)
Q Consensus 378 ~~~ 380 (628)
+++
T Consensus 156 ~~v 158 (493)
T PLN02350 156 KNI 158 (493)
T ss_pred HHH
Confidence 554
|
|
| >PRK15040 L-serine dehydratase TdcG; Provisional | Back alignment and domain information |
|---|
Probab=98.82 E-value=2.1e-08 Score=109.61 Aligned_cols=147 Identities=10% Similarity=0.030 Sum_probs=102.0
Q ss_pred HHHHhHH-HHHHhcCC--CCceEEEEEEeecCCCCCCCcccchHHHHHhhccccccCcccccch---HhHHhhc------
Q 006864 421 AKKLGRL-AVQLVSGG--SGIKSVKLIYRSARDPDDLDTRILRAMITKGIIEPISASFINLVNA---DFTAKQK------ 488 (628)
Q Consensus 421 AerlG~l-a~qL~~g~--~~~~~v~i~~~Gs~a~~~~~~~~~~~a~l~GlL~~~~~~~vnlvNA---~~iAke~------ 488 (628)
+-|+|+. +++|.... ..+++++++++|||+ .|+++|++|+|++.||+ ++.++++++.++ +.+++++
T Consensus 22 Pmraa~~F~~~L~~~~~l~~~~~v~i~LyGSLA-~TGkGHgTD~Avl~GLl-G~~Pd~~~~~~~~~~~~~~~~~~~l~l~ 99 (454)
T PRK15040 22 PMNAGKSFIDRLESSGLLTATSHIVVDLYGSLS-LTGKGHATDVAIIMGLA-GNSPQDVVIDEIPAFIELVTRSGRLPVA 99 (454)
T ss_pred HHHHHHHHHHHHhhccccCCccEEEEEEEchhh-hcCCCccccHHHHHhhc-cCCcccCChhhhHHHHHHHHHcCccccC
Confidence 3566665 55665410 168999999999999 99999999999999999 667778999998 7777777
Q ss_pred -Cc---------eEEEEEeecCCCCCCCCceEEEEEEecccccceeeCCCcEEEEEEEEEC-CeeEEEEECceeEEeecC
Q 006864 489 -GL---------RISEERVVADSSPEFPIDSIQVQLSNVDSKFAAAVSENGEISIEGKVKF-GIPHLTRVGSFGVDASLE 557 (628)
Q Consensus 489 -GI---------~i~~~~~~~~~~~~~~~ntv~v~l~~~~~~~~~~~~~~~~~~v~Gt~~g-G~~~I~~Idgf~Vd~~~~ 557 (628)
|+ ++.|.+... ..|||++++++.+ .++..++.++.|+| |.+++-+ ++.-+. ..
T Consensus 100 ~G~~~i~f~~~~di~f~~~~l----p~HPN~m~~~a~~---------~~~~~~e~~~ySIGGGfI~~~~--~~~~~~-~~ 163 (454)
T PRK15040 100 SGAHIVDFPVAKNIIFHPEML----PRHENGMRITAWK---------GQEELLSKTYYSVGGGFIVEEE--HFGLSH-DV 163 (454)
T ss_pred CCCccccCCCCCceEECCCCC----CCCCCeeEEEEEc---------CCCcEEEEEEEEcCCceeeecc--cccccc-CC
Confidence 77 678864432 2699999999983 33345689999998 6666542 111110 00
Q ss_pred CcEEEEeccCCC---CchhhHHhhhhcCCccccceEEe
Q 006864 558 GNLILCRQVDQP---GMIGKVGNILGEHNVNVNFMSVG 592 (628)
Q Consensus 558 ~~~Llv~~~D~P---GvIa~V~~iL~~~~INIa~m~v~ 592 (628)
..+.| --...+...-.+++++|..+-+.
T Consensus 164 -------~~~~py~f~s~~ell~~c~~~~~~i~e~v~~ 194 (454)
T PRK15040 164 -------ETSVPYDFHSAGELLKMCDYNGLSISGLMMH 194 (454)
T ss_pred -------CCCCCcCCCCHHHHHHHHHHhCCCHHHHHHH
Confidence 11222 23445666667788888877553
|
|
| >TIGR00465 ilvC ketol-acid reductoisomerase | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.5e-08 Score=107.58 Aligned_cols=95 Identities=26% Similarity=0.395 Sum_probs=73.2
Q ss_pred ecCCeEEEEecChhHHHHHHHHHcCCCEEEEECCCC--ChhHHHHcCCcccCHHHHhccCCEEEEcCCCCccccccccHH
Q 006864 227 LVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA--PADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDE 304 (628)
Q Consensus 227 l~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~--~~~~a~~~g~~~~sl~ell~~aDvV~l~~Plt~~t~~li~~~ 304 (628)
|+||+|||||+|+||+++|+.|+.+|++|+++++.. ..+.+.+.|+...+..+++++||+|++++|-.. ....+.++
T Consensus 1 l~~kkIgiIG~G~mG~AiA~~L~~sG~~Viv~~~~~~~~~~~a~~~Gv~~~s~~ea~~~ADiVvLaVpp~~-~~~~v~~e 79 (314)
T TIGR00465 1 LKGKTVAIIGYGSQGHAQALNLRDSGLNVIVGLRKGGASWKKATEDGFKVGTVEEAIPQADLIMNLLPDEV-QHEVYEAE 79 (314)
T ss_pred CCcCEEEEEeEcHHHHHHHHHHHHCCCeEEEEECcChhhHHHHHHCCCEECCHHHHHhcCCEEEEeCCcHh-HHHHHHHH
Confidence 579999999999999999999999999987754432 234445678877788999999999999999432 23444556
Q ss_pred HHhcCCCCcEEEEcCCCch
Q 006864 305 TFAKMKKGVRIVNVARGGV 323 (628)
Q Consensus 305 ~l~~mk~gailIN~aRg~~ 323 (628)
....|+++. +|.++-|=-
T Consensus 80 i~~~l~~g~-iVs~aaG~~ 97 (314)
T TIGR00465 80 IQPLLKEGK-TLGFSHGFN 97 (314)
T ss_pred HHhhCCCCc-EEEEeCCcc
Confidence 667788886 777776643
|
This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway |
| >PRK05225 ketol-acid reductoisomerase; Validated | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.2e-08 Score=111.36 Aligned_cols=100 Identities=18% Similarity=0.254 Sum_probs=79.0
Q ss_pred cccccccc-e-eeecCCeEEEEecChhHHHHHHHHHcCCCEEEE------ECCCC-ChhHHHHcCCcccCHHHHhccCCE
Q 006864 216 KWLRSKYV-G-VSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIA------HDPYA-PADKARAVGVELVSFDQALATADF 286 (628)
Q Consensus 216 ~W~~~~~~-g-~~l~GktiGIIGlG~IG~~vA~~l~~~G~~V~~------~d~~~-~~~~a~~~g~~~~sl~ell~~aDv 286 (628)
-|.+..|. + ..|+||||+|||+|.+|+.-|..|+..|++|++ .|... +.+.+.+.|+...+++|++++||+
T Consensus 21 ~~~r~ef~~~~~~LkgKtIaIIGyGSqG~AqAlNLrdSGvnVvvglr~~~id~~~~s~~kA~~dGF~v~~~~Ea~~~ADv 100 (487)
T PRK05225 21 FMDRDEFADGASYLKGKKIVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATENGFKVGTYEELIPQADL 100 (487)
T ss_pred ecchhhccchhHHhCCCEEEEEccCHHHHHHhCCCccccceeEEeccccccccccchHHHHHhcCCccCCHHHHHHhCCE
Confidence 48877652 2 469999999999999999777777777777763 22222 344556678888899999999999
Q ss_pred EEEcCCCCccccccccHHHHhcCCCCcEEEE
Q 006864 287 ISLHMPLNPTTSKIFNDETFAKMKKGVRIVN 317 (628)
Q Consensus 287 V~l~~Plt~~t~~li~~~~l~~mk~gailIN 317 (628)
|++.+|.+ + ++.+.++.+..||+|+.|.=
T Consensus 101 VviLlPDt-~-q~~v~~~i~p~LK~Ga~L~f 129 (487)
T PRK05225 101 VINLTPDK-Q-HSDVVRAVQPLMKQGAALGY 129 (487)
T ss_pred EEEcCChH-H-HHHHHHHHHhhCCCCCEEEe
Confidence 99999988 3 77778999999999998753
|
|
| >TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=98.74 E-value=4.9e-08 Score=102.98 Aligned_cols=108 Identities=14% Similarity=0.250 Sum_probs=85.2
Q ss_pred CeEEEEecChhHHHHHHHHHcCCCEEEEECCCCC-hhHHHHcCCcc-cCHHHH---hccCCEEEEcCCCCccccccccHH
Q 006864 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAP-ADKARAVGVEL-VSFDQA---LATADFISLHMPLNPTTSKIFNDE 304 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~g~~~-~sl~el---l~~aDvV~l~~Plt~~t~~li~~~ 304 (628)
++|||||+|.||..+|++|...|++|.+||+... .+...+.+... .+++++ +.++|+|++++|-. .++.++ ++
T Consensus 1 M~Ig~IGlG~mG~~la~~L~~~g~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~~~~~dvIi~~vp~~-~~~~v~-~~ 78 (298)
T TIGR00872 1 MQLGLIGLGRMGANIVRRLAKRGHDCVGYDHDQDAVKAMKEDRTTGVANLRELSQRLSAPRVVWVMVPHG-IVDAVL-EE 78 (298)
T ss_pred CEEEEEcchHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCcccCCHHHHHhhcCCCCEEEEEcCch-HHHHHH-HH
Confidence 3799999999999999999999999999998753 23334445432 355554 45789999999966 667666 46
Q ss_pred HHhcCCCCcEEEEcCCCchhcHHHHHHHHhCCCee
Q 006864 305 TFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVA 339 (628)
Q Consensus 305 ~l~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~ 339 (628)
....+++|.++||++.+...+...+.+.+++..+.
T Consensus 79 l~~~l~~g~ivid~st~~~~~t~~~~~~~~~~g~~ 113 (298)
T TIGR00872 79 LAPTLEKGDIVIDGGNSYYKDSLRRYKLLKEKGIH 113 (298)
T ss_pred HHhhCCCCCEEEECCCCCcccHHHHHHHHHhcCCe
Confidence 66778999999999999888888888888776653
|
This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle. |
| >TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase | Back alignment and domain information |
|---|
Probab=98.71 E-value=3.4e-08 Score=103.57 Aligned_cols=105 Identities=18% Similarity=0.265 Sum_probs=85.1
Q ss_pred EEecChhHHHHHHHHHcCCCEEEEECCCCC-hhHHHHcCCccc-CHHHHhccCCEEEEcCCCCcccccccc--HHHHhcC
Q 006864 234 VMGFGKVGSEVARRAKGLGMNVIAHDPYAP-ADKARAVGVELV-SFDQALATADFISLHMPLNPTTSKIFN--DETFAKM 309 (628)
Q Consensus 234 IIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~g~~~~-sl~ell~~aDvV~l~~Plt~~t~~li~--~~~l~~m 309 (628)
|||+|.||..+|++|...|++|.+||+... .+...+.|+... ++.+++++||+|++|+|....++.++. ...+..+
T Consensus 1 ~IGlG~mG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~~~~~~advVil~vp~~~~~~~v~~g~~~l~~~~ 80 (288)
T TIGR01692 1 FIGLGNMGGPMAANLLKAGHPVRVFDLFPDAVEEAVAAGAQAAASPAEAAEGADRVITMLPAGQHVISVYSGDEGILPKV 80 (288)
T ss_pred CCcccHhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEeCCChHHHHHHHcCcchHhhcC
Confidence 689999999999999999999999998753 234455566544 889999999999999997666666652 4566788
Q ss_pred CCCcEEEEcCCCchhcHHHHHHHHhCCCe
Q 006864 310 KKGVRIVNVARGGVIDEEALVRALDSGVV 338 (628)
Q Consensus 310 k~gailIN~aRg~~vde~aL~~aL~~g~i 338 (628)
++|.++||++....-....+.+.+++..+
T Consensus 81 ~~g~~vid~st~~p~~~~~~~~~~~~~g~ 109 (288)
T TIGR01692 81 AKGSLLIDCSTIDPDSARKLAELAAAHGA 109 (288)
T ss_pred CCCCEEEECCCCCHHHHHHHHHHHHHcCC
Confidence 99999999998887777888888876544
|
This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446). |
| >PLN02858 fructose-bisphosphate aldolase | Back alignment and domain information |
|---|
Probab=98.70 E-value=6.1e-08 Score=120.27 Aligned_cols=107 Identities=17% Similarity=0.171 Sum_probs=91.3
Q ss_pred CCeEEEEecChhHHHHHHHHHcCCCEEEEECCCCCh-hHHHHcCCc-ccCHHHHhccCCEEEEcCCCCccccccc--cHH
Q 006864 229 GKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPA-DKARAVGVE-LVSFDQALATADFISLHMPLNPTTSKIF--NDE 304 (628)
Q Consensus 229 GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~~g~~-~~sl~ell~~aDvV~l~~Plt~~t~~li--~~~ 304 (628)
.++|||||+|.||..||++|...|++|.+||++... +.....|.. ..+..+++++||+|++|+|..++++.++ ...
T Consensus 324 ~~~IGfIGlG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~Ga~~~~s~~e~~~~aDvVi~~V~~~~~v~~Vl~g~~g 403 (1378)
T PLN02858 324 VKRIGFIGLGAMGFGMASHLLKSNFSVCGYDVYKPTLVRFENAGGLAGNSPAEVAKDVDVLVIMVANEVQAENVLFGDLG 403 (1378)
T ss_pred CCeEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEecCChHHHHHHHhchhh
Confidence 489999999999999999999999999999987532 334445654 3488999999999999999888888876 356
Q ss_pred HHhcCCCCcEEEEcCCCchhcHHHHHHHHhC
Q 006864 305 TFAKMKKGVRIVNVARGGVIDEEALVRALDS 335 (628)
Q Consensus 305 ~l~~mk~gailIN~aRg~~vde~aL~~aL~~ 335 (628)
.+..|++|.++||++....-..+.+.+.+++
T Consensus 404 ~~~~l~~g~ivVd~STvsP~~~~~la~~l~~ 434 (1378)
T PLN02858 404 AVSALPAGASIVLSSTVSPGFVIQLERRLEN 434 (1378)
T ss_pred HHhcCCCCCEEEECCCCCHHHHHHHHHHHHh
Confidence 7888999999999999998888899998887
|
|
| >cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH) | Back alignment and domain information |
|---|
Probab=98.68 E-value=4.2e-08 Score=80.70 Aligned_cols=67 Identities=36% Similarity=0.604 Sum_probs=62.4
Q ss_pred EEEeccCCCCchhhHHhhhhcCCccccceEEeeeecCccEEEEEEeCCCCCHHHHHHHhcccCcccc
Q 006864 561 ILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDEEPNQDSLKEIGKVHFVARI 627 (628)
Q Consensus 561 Llv~~~D~PGvIa~V~~iL~~~~INIa~m~v~R~~~gg~Al~~i~vD~~~~~~~l~~L~~l~~v~~v 627 (628)
+++.+.|+||.+++|+++|+++|+||.+|.+.+...++.+.+++.+|.+.+++++++|+++++|.++
T Consensus 2 l~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~i~v~~~~~~~~~~~l~~~~~v~~v 68 (73)
T cd04902 2 LVVRNTDRPGVIGKVGTILGEAGINIAGMQVGRDEPGGEALMVLSVDEPVPDEVLEELRALPGILSA 68 (73)
T ss_pred EEEEeCCCCCHHHHHHHHHHHcCcChhheEeeccCCCCEEEEEEEeCCCCCHHHHHHHHcCCCccEE
Confidence 6778999999999999999999999999999887678899999999999898999999999999875
|
The C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with an extended C-terminal (xct) region from bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. Some 3PGDH enzymes have an additional domain formed by an extended C-terminal region. This additional domain introduces significant asymmetry to the homotetramer. Adjacent ACT (regulatory) domains interact, creating two serine-binding sites, however, this asymmetric arrangement results in the formation of two different and distinct domain interfaces between iden |
| >PLN02858 fructose-bisphosphate aldolase | Back alignment and domain information |
|---|
Probab=98.68 E-value=5.4e-08 Score=120.69 Aligned_cols=120 Identities=17% Similarity=0.180 Sum_probs=98.8
Q ss_pred cCCeEEEEecChhHHHHHHHHHcCCCEEEEECCCCC-hhHHHHcCCccc-CHHHHhccCCEEEEcCCCCccccccc--cH
Q 006864 228 VGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAP-ADKARAVGVELV-SFDQALATADFISLHMPLNPTTSKIF--ND 303 (628)
Q Consensus 228 ~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~g~~~~-sl~ell~~aDvV~l~~Plt~~t~~li--~~ 303 (628)
..++||+||+|.||..||++|...|++|.+||+... .+...+.|+..+ +..++.++||+|++|+|..+.++.++ ..
T Consensus 3 ~~~~IGfIGLG~MG~~mA~~L~~~G~~v~v~dr~~~~~~~l~~~Ga~~~~s~~e~a~~advVi~~l~~~~~v~~V~~g~~ 82 (1378)
T PLN02858 3 SAGVVGFVGLDSLSFELASSLLRSGFKVQAFEISTPLMEKFCELGGHRCDSPAEAAKDAAALVVVLSHPDQVDDVFFGDE 82 (1378)
T ss_pred CCCeEEEEchhHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEEcCChHHHHHHHhchh
Confidence 357899999999999999999999999999999753 234455676554 89999999999999999888888776 34
Q ss_pred HHHhcCCCCcEEEEcCCCchhcHHHHHHHHhCCC--eeEEEee--ccCCC
Q 006864 304 ETFAKMKKGVRIVNVARGGVIDEEALVRALDSGV--VAQAALD--VFTEE 349 (628)
Q Consensus 304 ~~l~~mk~gailIN~aRg~~vde~aL~~aL~~g~--i~ga~lD--V~~~E 349 (628)
..+..+++|.++||++....-....+.+.+++.. + ..+| |++.-
T Consensus 83 g~~~~l~~g~iivd~STi~p~~~~~la~~l~~~g~~~--~~lDaPVsGg~ 130 (1378)
T PLN02858 83 GAAKGLQKGAVILIRSTILPLQLQKLEKKLTERKEQI--FLVDAYVSKGM 130 (1378)
T ss_pred hHHhcCCCcCEEEECCCCCHHHHHHHHHHHHhcCCce--EEEEccCcCCH
Confidence 6788899999999999999999999999998765 5 3455 44433
|
|
| >PRK15023 L-serine deaminase; Provisional | Back alignment and domain information |
|---|
Probab=98.68 E-value=7e-08 Score=105.54 Aligned_cols=146 Identities=11% Similarity=-0.024 Sum_probs=98.6
Q ss_pred HHHHhHH-HHHHhcC--CCCceEEEEEEeecCCCCCCCcccchHHHHHhhccccccCcc------------cccchHhHH
Q 006864 421 AKKLGRL-AVQLVSG--GSGIKSVKLIYRSARDPDDLDTRILRAMITKGIIEPISASFI------------NLVNADFTA 485 (628)
Q Consensus 421 AerlG~l-a~qL~~g--~~~~~~v~i~~~Gs~a~~~~~~~~~~~a~l~GlL~~~~~~~v------------nlvNA~~iA 485 (628)
+.|+|+. +++|... ...+++++++++|||+ .|+++|++|+|++.||+ ++.++++ +..+++.++
T Consensus 22 Pmraa~~F~~~L~~~~~l~~~~rv~v~LyGSLA-~TGkGHGTD~Avl~GL~-G~~Pd~~d~~~~~~~~~~~~~~~~l~la 99 (454)
T PRK15023 22 PMKAGKQFVDDLVEKGLLDSVTRVAVDVYGSLS-LTGKGHHTDIAIIMGLA-GNEPATVDIDSIPGFIRDVEERERLLLA 99 (454)
T ss_pred HHHHHHHHHHHHhhccccCCccEEEEEEEchhh-hcCCCccccHHHHhhhc-cCCCCCcChhhhHHHHHHHhhcCccccC
Confidence 4567775 6777631 1268999999999999 99999999999999999 5566667 568888888
Q ss_pred hhcCceEEEE--------EeecCCCCCCCCceEEEEEEecccccceeeCCCcEEEEEEEEEC-CeeEEEEECceeEEeec
Q 006864 486 KQKGLRISEE--------RVVADSSPEFPIDSIQVQLSNVDSKFAAAVSENGEISIEGKVKF-GIPHLTRVGSFGVDASL 556 (628)
Q Consensus 486 ke~GI~i~~~--------~~~~~~~~~~~~ntv~v~l~~~~~~~~~~~~~~~~~~v~Gt~~g-G~~~I~~Idgf~Vd~~~ 556 (628)
+++ +++.|. +... ..|||++++++.+ .++...+.++.|+| |.+++-+=.+.+ . .
T Consensus 100 ~~~-~~i~F~~~~di~f~~~~l----p~HPN~m~f~a~~---------~~~~~~e~~~ySIGGGfI~~~~~~~~~--~-~ 162 (454)
T PRK15023 100 QGR-HEVDFPRDNGMRFHNGNL----PLHENGMQIHAYN---------GDEVVYSKTYYSIGGGFIVDEEHFGQD--A-A 162 (454)
T ss_pred CCC-ceeecCcccceeECCCCC----CCCCCeeEEEEEe---------CCCcEEEEEEEEcCCceeeeccccccc--c-c
Confidence 665 677762 2221 2699999999983 33345699999998 777764211111 0 0
Q ss_pred CCcEEEEeccCCCC---chhhHHhhhhcCCccccceEEe
Q 006864 557 EGNLILCRQVDQPG---MIGKVGNILGEHNVNVNFMSVG 592 (628)
Q Consensus 557 ~~~~Llv~~~D~PG---vIa~V~~iL~~~~INIa~m~v~ 592 (628)
. ..+.|- -...+...-.++++.|..+-+.
T Consensus 163 ~-------~~~~py~f~s~~ell~~c~~~~~~i~e~v~~ 194 (454)
T PRK15023 163 N-------EVSVPYPFKSATELLAYCNETGYSLSGLAMQ 194 (454)
T ss_pred C-------CCCCCcCCCCHHHHHHHHHHhCCCHHHHHHH
Confidence 0 112232 3444556666778888776553
|
|
| >PLN02545 3-hydroxybutyryl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=98.67 E-value=2e-07 Score=97.99 Aligned_cols=130 Identities=23% Similarity=0.218 Sum_probs=88.6
Q ss_pred CeEEEEecChhHHHHHHHHHcCCCEEEEECCCCCh-hH-----------HHHcC-------------CcccCHHHHhccC
Q 006864 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPA-DK-----------ARAVG-------------VELVSFDQALATA 284 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~-----------a~~~g-------------~~~~sl~ell~~a 284 (628)
++|||||+|.||..+|+.+...|++|++||+.... +. ..+.| ....+-.+.++.|
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~a 84 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCTTNLEELRDA 84 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEeeCCHHHhCCC
Confidence 68999999999999999999999999999987522 11 11111 1222333568999
Q ss_pred CEEEEcCCCCccccccccHHHHhcCCCCcEEE-EcCCCchhcHHHHHHHHhC-CCeeEEEeeccCCCCCCCCCccccCCc
Q 006864 285 DFISLHMPLNPTTSKIFNDETFAKMKKGVRIV-NVARGGVIDEEALVRALDS-GVVAQAALDVFTEEPPAKDSKLVQHEN 362 (628)
Q Consensus 285 DvV~l~~Plt~~t~~li~~~~l~~mk~gailI-N~aRg~~vde~aL~~aL~~-g~i~ga~lDV~~~EP~~~~~~L~~~~n 362 (628)
|+|+.|+|-.++.+..+-.+..+.++++++|+ |++.-. ...+.+.++. .++.|+ .. ..|+. . .+-
T Consensus 85 D~Vieav~e~~~~k~~v~~~l~~~~~~~~il~s~tS~i~---~~~l~~~~~~~~r~~g~--h~--~~pp~-~-----~~l 151 (295)
T PLN02545 85 DFIIEAIVESEDLKKKLFSELDRICKPSAILASNTSSIS---ITRLASATQRPQQVIGM--HF--MNPPP-I-----MKL 151 (295)
T ss_pred CEEEEcCccCHHHHHHHHHHHHhhCCCCcEEEECCCCCC---HHHHHhhcCCCcceEEE--ec--cCCcc-c-----Cce
Confidence 99999999888888877777777799999887 776554 3445555543 355333 22 23321 1 234
Q ss_pred EEEcCCCCCC
Q 006864 363 VTVTPHLGAS 372 (628)
Q Consensus 363 vilTPHig~~ 372 (628)
+.+.|+-++.
T Consensus 152 veiv~g~~t~ 161 (295)
T PLN02545 152 VEIIRGADTS 161 (295)
T ss_pred EEEeCCCCCC
Confidence 6777875544
|
|
| >PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates | Back alignment and domain information |
|---|
Probab=98.66 E-value=3.3e-08 Score=94.30 Aligned_cols=90 Identities=32% Similarity=0.495 Sum_probs=67.2
Q ss_pred ecCCeEEEEecChhHHHHHHHHHcCCCEEEEECCCC--ChhHHHHcCCcccCHHHHhccCCEEEEcCCCCccccccccHH
Q 006864 227 LVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA--PADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDE 304 (628)
Q Consensus 227 l~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~--~~~~a~~~g~~~~sl~ell~~aDvV~l~~Plt~~t~~li~~~ 304 (628)
|+||+|+|||||..|.+.|..|+.-|++|++-.+.. +.+++++.|++..++.|+.++||+|.+.+|-.. ...++.++
T Consensus 2 l~~k~IAViGyGsQG~a~AlNLrDSG~~V~Vglr~~s~s~~~A~~~Gf~v~~~~eAv~~aDvV~~L~PD~~-q~~vy~~~ 80 (165)
T PF07991_consen 2 LKGKTIAVIGYGSQGHAHALNLRDSGVNVIVGLREGSASWEKAKADGFEVMSVAEAVKKADVVMLLLPDEV-QPEVYEEE 80 (165)
T ss_dssp HCTSEEEEES-SHHHHHHHHHHHHCC-EEEEEE-TTCHHHHHHHHTT-ECCEHHHHHHC-SEEEE-S-HHH-HHHHHHHH
T ss_pred cCCCEEEEECCChHHHHHHHHHHhCCCCEEEEecCCCcCHHHHHHCCCeeccHHHHHhhCCEEEEeCChHH-HHHHHHHH
Confidence 679999999999999999999999999998765543 457788999999999999999999999999322 23455677
Q ss_pred HHhcCCCCcEEEE
Q 006864 305 TFAKMKKGVRIVN 317 (628)
Q Consensus 305 ~l~~mk~gailIN 317 (628)
....||+|..|+=
T Consensus 81 I~p~l~~G~~L~f 93 (165)
T PF07991_consen 81 IAPNLKPGATLVF 93 (165)
T ss_dssp HHHHS-TT-EEEE
T ss_pred HHhhCCCCCEEEe
Confidence 7778999987764
|
This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C. |
| >PTZ00142 6-phosphogluconate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.65 E-value=8.8e-08 Score=106.93 Aligned_cols=121 Identities=10% Similarity=0.169 Sum_probs=97.2
Q ss_pred CeEEEEecChhHHHHHHHHHcCCCEEEEECCCCCh-hHHHHc----CCc---ccCHHHHhc---cCCEEEEcCCCCcccc
Q 006864 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPA-DKARAV----GVE---LVSFDQALA---TADFISLHMPLNPTTS 298 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~~----g~~---~~sl~ell~---~aDvV~l~~Plt~~t~ 298 (628)
.+|||||+|.||+.+|++|...|++|.+||+.... +...+. |.. ..+++++++ ++|+|++++|-.+.++
T Consensus 2 ~~IgvIGLG~MG~~lA~nL~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~i~~~~s~~e~v~~l~~~d~Iil~v~~~~~v~ 81 (470)
T PTZ00142 2 SDIGLIGLAVMGQNLALNIASRGFKISVYNRTYEKTEEFVKKAKEGNTRVKGYHTLEELVNSLKKPRKVILLIKAGEAVD 81 (470)
T ss_pred CEEEEEeEhHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhhhhcCCcceecCCHHHHHhcCCCCCEEEEEeCChHHHH
Confidence 47999999999999999999999999999987532 222221 422 347888886 5899999999888888
Q ss_pred ccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhCCCeeEEEeeccCCCCC
Q 006864 299 KIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEEPP 351 (628)
Q Consensus 299 ~li~~~~l~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~ga~lDV~~~EP~ 351 (628)
.++ ++.+..|++|.+|||++.+.--|...+.+.+++..+.....=|.+.++.
T Consensus 82 ~vi-~~l~~~L~~g~iIID~gn~~~~dt~~r~~~l~~~Gi~fldapVSGG~~g 133 (470)
T PTZ00142 82 ETI-DNLLPLLEKGDIIIDGGNEWYLNTERRIKRCEEKGILYLGMGVSGGEEG 133 (470)
T ss_pred HHH-HHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEcCCCCCCHHH
Confidence 887 5677789999999999999999999999999988775555557776643
|
|
| >PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.64 E-value=4.5e-07 Score=95.08 Aligned_cols=131 Identities=18% Similarity=0.227 Sum_probs=90.0
Q ss_pred CeEEEEecChhHHHHHHHHHcCCCEEEEECCCCCh-hHHHH-------------------------cCCc-ccCHHHHhc
Q 006864 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPA-DKARA-------------------------VGVE-LVSFDQALA 282 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~-------------------------~g~~-~~sl~ell~ 282 (628)
++|+|||.|.||..+|..+...|.+|..||+.... +.+.+ ..+. ..++++.++
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~a~~ 83 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLTTDLAEAVK 83 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEeCCHHHHhc
Confidence 58999999999999999999999999999986421 11110 0111 237888899
Q ss_pred cCCEEEEcCCCCccccccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhCC-CeeEEEeeccCCCCCCCCCccccCC
Q 006864 283 TADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSG-VVAQAALDVFTEEPPAKDSKLVQHE 361 (628)
Q Consensus 283 ~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~~vde~aL~~aL~~g-~i~ga~lDV~~~EP~~~~~~L~~~~ 361 (628)
.||+|+.++|-..+.+.-+-++....++++++|+..+++- ....+.+.++.. ++.| +.. .+|.+..+
T Consensus 84 ~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~sntSt~--~~~~~~~~~~~~~r~vg--~Hf--------~~p~~~~~ 151 (287)
T PRK08293 84 DADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFATNSSTL--LPSQFAEATGRPEKFLA--LHF--------ANEIWKNN 151 (287)
T ss_pred CCCEEEEeccCCHHHHHHHHHHHHhhCCCCCEEEECcccC--CHHHHHhhcCCcccEEE--EcC--------CCCCCcCC
Confidence 9999999999665555544455556689999886554444 334566665432 4434 332 23455778
Q ss_pred cEEEcCCCCCC
Q 006864 362 NVTVTPHLGAS 372 (628)
Q Consensus 362 nvilTPHig~~ 372 (628)
.+.+.||-..+
T Consensus 152 lvevv~~~~t~ 162 (287)
T PRK08293 152 TAEIMGHPGTD 162 (287)
T ss_pred eEEEeCCCCCC
Confidence 89999987765
|
|
| >PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1 | Back alignment and domain information |
|---|
Probab=98.63 E-value=3.8e-09 Score=109.19 Aligned_cols=219 Identities=18% Similarity=0.172 Sum_probs=134.4
Q ss_pred HHHHHHcCC--CEEEEECCCC-ChhHHHHcCCcc--cCHHHHhccCCEEEEcCCCCccccccccHHHHhcCCCCcEEEEc
Q 006864 244 VARRAKGLG--MNVIAHDPYA-PADKARAVGVEL--VSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNV 318 (628)
Q Consensus 244 vA~~l~~~G--~~V~~~d~~~-~~~~a~~~g~~~--~sl~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~ 318 (628)
+|+.|+..| .+|++||+.. ..+.+.+.|+.. .+-.+.+++||+|++|+|... +..++ ++....+++|++|+|+
T Consensus 1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~~~g~~~~~~~~~~~~~~~DlvvlavP~~~-~~~~l-~~~~~~~~~~~iv~Dv 78 (258)
T PF02153_consen 1 IALALRKAGPDVEVYGYDRDPETLEAALELGIIDEASTDIEAVEDADLVVLAVPVSA-IEDVL-EEIAPYLKPGAIVTDV 78 (258)
T ss_dssp HHHHHHHTTTTSEEEEE-SSHHHHHHHHHTTSSSEEESHHHHGGCCSEEEE-S-HHH-HHHHH-HHHHCGS-TTSEEEE-
T ss_pred ChHHHHhCCCCeEEEEEeCCHHHHHHHHHCCCeeeccCCHhHhcCCCEEEEcCCHHH-HHHHH-HHhhhhcCCCcEEEEe
Confidence 467777666 8999999986 445566778642 233678999999999999543 33333 4444568999999999
Q ss_pred CCCchhcHHHHHHHHhCC-CeeEEEee-ccCCC---CCCCCCccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHc
Q 006864 319 ARGGVIDEEALVRALDSG-VVAQAALD-VFTEE---PPAKDSKLVQHENVTVTPHLGASTKEAQEGVAIEIAEAVVGALR 393 (628)
Q Consensus 319 aRg~~vde~aL~~aL~~g-~i~ga~lD-V~~~E---P~~~~~~L~~~~nvilTPHig~~T~ea~~~~~~~~~~~i~~~l~ 393 (628)
+.-+.--.+++.+.+..+ ++.| .. -|+.| |..++..||+..++++||+-... ....+.+.++++
T Consensus 79 ~SvK~~~~~~~~~~~~~~~~~v~--~HPM~G~e~~G~~~a~~~lf~g~~~il~p~~~~~---------~~~~~~~~~l~~ 147 (258)
T PF02153_consen 79 GSVKAPIVEAMERLLPEGVRFVG--GHPMAGPEKSGPEAADADLFEGRNWILCPGEDTD---------PEALELVEELWE 147 (258)
T ss_dssp -S-CHHHHHHHHHHHTSSGEEEE--EEESCSTSSSSGGG-TTTTTTTSEEEEEECTTS----------HHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHhcCcccceee--cCCCCCCccccchhhcccccCCCeEEEeCCCCCh---------HHHHHHHHHHHH
Confidence 999988888888888733 3332 22 23332 11346689999999999998744 223445555554
Q ss_pred CCCCCCcccCCCCCcccccccc------cHHHHHHHH---------hHHHHHHhcCCCCceEEEEEEeecCCCCCCCccc
Q 006864 394 GELSATAINAPMVPSEVLSELA------PYVVLAKKL---------GRLAVQLVSGGSGIKSVKLIYRSARDPDDLDTRI 458 (628)
Q Consensus 394 g~~~~~~vn~p~~~~~~~~~~~------p~~~lAerl---------G~la~qL~~g~~~~~~v~i~~~Gs~a~~~~~~~~ 458 (628)
.-.. .+ -.++++.+|++- |++....-. .....+++++ +++++++++.+++. +|.+...
T Consensus 148 ~~Ga-~~---~~~~~eeHD~~~A~vshlpH~~a~al~~~~~~~~~~~~~~~~~a~~--~frd~tRia~~~p~-l~~~I~~ 220 (258)
T PF02153_consen 148 ALGA-RV---VEMDAEEHDRIMAYVSHLPHLLASALANTLAELSSDDPDILRLAGG--GFRDMTRIASSDPE-LWADIFL 220 (258)
T ss_dssp HCT--EE---EE--HHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHGTH--HHHHHHGGGGS-HH-HHHHHHH
T ss_pred HCCC-EE---EEcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHhhcch--hHHhhcccccCChH-HHHHHHH
Confidence 3332 11 246788888865 332221111 1123456666 79999988888887 8999999
Q ss_pred chHHHHHhhccccccCcccccchH
Q 006864 459 LRAMITKGIIEPISASFINLVNAD 482 (628)
Q Consensus 459 ~~~a~l~GlL~~~~~~~vnlvNA~ 482 (628)
.|+..+...|+.+.....++.++.
T Consensus 221 ~N~~~~~~~l~~~~~~L~~l~~~l 244 (258)
T PF02153_consen 221 SNPENLLEALDEFIKELNELREAL 244 (258)
T ss_dssp HTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999866666766666545555544
|
3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D. |
| >COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.63 E-value=8.5e-08 Score=100.95 Aligned_cols=102 Identities=31% Similarity=0.469 Sum_probs=84.5
Q ss_pred eeecCCeEEEEecChhHHHHHHHHHcCCCEEEEECCCC-ChhHHHHcCCcccCHHHHhccCCEEEEcCCCCccccccccH
Q 006864 225 VSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA-PADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFND 303 (628)
Q Consensus 225 ~~l~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~g~~~~sl~ell~~aDvV~l~~Plt~~t~~li~~ 303 (628)
.-+.||++.|.|||..|+-+|.+|++.|++|++..-.+ ....+.-.|++...+++....+|+++.++ .+++.|..
T Consensus 205 ~liaGK~vVV~GYG~vGrG~A~~~rg~GA~ViVtEvDPI~AleA~MdGf~V~~m~~Aa~~gDifiT~T----GnkdVi~~ 280 (420)
T COG0499 205 VLLAGKNVVVAGYGWVGRGIAMRLRGMGARVIVTEVDPIRALEAAMDGFRVMTMEEAAKTGDIFVTAT----GNKDVIRK 280 (420)
T ss_pred eeecCceEEEecccccchHHHHHhhcCCCeEEEEecCchHHHHHhhcCcEEEEhHHhhhcCCEEEEcc----CCcCccCH
Confidence 45899999999999999999999999999999974332 23445667899999999999999999865 36899999
Q ss_pred HHHhcCCCCcEEEEcCCCch-hcHHHHH
Q 006864 304 ETFAKMKKGVRIVNVARGGV-IDEEALV 330 (628)
Q Consensus 304 ~~l~~mk~gailIN~aRg~~-vde~aL~ 330 (628)
+.|..||+|+++-|.+.=.+ ||.+.|.
T Consensus 281 eh~~~MkDgaIl~N~GHFd~EI~~~~L~ 308 (420)
T COG0499 281 EHFEKMKDGAILANAGHFDVEIDVAGLE 308 (420)
T ss_pred HHHHhccCCeEEecccccceeccHHHHH
Confidence 99999999999999875433 4444443
|
|
| >KOG0409 consensus Predicted dehydrogenase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.3e-07 Score=97.85 Aligned_cols=112 Identities=13% Similarity=0.199 Sum_probs=93.8
Q ss_pred ecCCeEEEEecChhHHHHHHHHHcCCCEEEEECCCCCh-hHHHHcCCccc-CHHHHhccCCEEEEcCCCCcccccccc--
Q 006864 227 LVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPA-DKARAVGVELV-SFDQALATADFISLHMPLNPTTSKIFN-- 302 (628)
Q Consensus 227 l~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~~g~~~~-sl~ell~~aDvV~l~~Plt~~t~~li~-- 302 (628)
..-++||+||+|.||..++..|-..|++|.+||++.+. ..+.+.|.+.. +..|+.+.||+|+.++|...+.+.++.
T Consensus 33 ~s~~~iGFIGLG~MG~~M~~nLik~G~kVtV~dr~~~k~~~f~~~Ga~v~~sPaeVae~sDvvitmv~~~~~v~~v~~g~ 112 (327)
T KOG0409|consen 33 PSKTRIGFIGLGNMGSAMVSNLIKAGYKVTVYDRTKDKCKEFQEAGARVANSPAEVAEDSDVVITMVPNPKDVKDVLLGK 112 (327)
T ss_pred cccceeeEEeeccchHHHHHHHHHcCCEEEEEeCcHHHHHHHHHhchhhhCCHHHHHhhcCEEEEEcCChHhhHHHhcCC
Confidence 35789999999999999999999999999999998743 44566787655 799999999999999998888777763
Q ss_pred HHHHhcCCCCcEE-EEcCCCchhcHHHHHHHHhCCCe
Q 006864 303 DETFAKMKKGVRI-VNVARGGVIDEEALVRALDSGVV 338 (628)
Q Consensus 303 ~~~l~~mk~gail-IN~aRg~~vde~aL~~aL~~g~i 338 (628)
...|...++|... |+.+.-...-...|.+++.....
T Consensus 113 ~Gvl~g~~~g~~~~vDmSTidp~~s~ei~~~i~~~~~ 149 (327)
T KOG0409|consen 113 SGVLSGIRPGKKATVDMSTIDPDTSLEIAKAISNKGG 149 (327)
T ss_pred CcceeeccCCCceEEeccccCHHHHHHHHHHHHhCCC
Confidence 3567777788777 89998888878888888887655
|
|
| >PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.60 E-value=4.8e-07 Score=94.86 Aligned_cols=131 Identities=19% Similarity=0.199 Sum_probs=88.4
Q ss_pred CeEEEEecChhHHHHHHHHHcCCCEEEEECCCCCh-hHHH-------HcC-----------------Ccc-cCHHHHhcc
Q 006864 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPA-DKAR-------AVG-----------------VEL-VSFDQALAT 283 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~-------~~g-----------------~~~-~sl~ell~~ 283 (628)
++|+|||+|.||..+|..+...|++|++||+.... +... ..+ +.. .++++.+++
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~ 81 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYSLDLKAAVAD 81 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCcHHHhhcC
Confidence 58999999999999999999999999999987422 1111 011 112 367889999
Q ss_pred CCEEEEcCCCCccccccccHHHHhcCCCCcEE-EEcCCCchhcHHHHHHHHhCCCeeEEEeeccCCCCCCCCCccccCCc
Q 006864 284 ADFISLHMPLNPTTSKIFNDETFAKMKKGVRI-VNVARGGVIDEEALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHEN 362 (628)
Q Consensus 284 aDvV~l~~Plt~~t~~li~~~~l~~mk~gail-IN~aRg~~vde~aL~~aL~~g~i~ga~lDV~~~EP~~~~~~L~~~~n 362 (628)
||+|+.|+|-..+.+..+-.+..+.+++++++ +|++.-.+ ..+.+.++. .-...++..| .|.. .. +-
T Consensus 82 aD~Vi~avpe~~~~k~~~~~~l~~~~~~~~il~~~tSt~~~---~~l~~~~~~-~~r~~g~h~~--~Pv~-~~-----~L 149 (288)
T PRK09260 82 ADLVIEAVPEKLELKKAVFETADAHAPAECYIATNTSTMSP---TEIASFTKR-PERVIAMHFF--NPVH-KM-----KL 149 (288)
T ss_pred CCEEEEeccCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCH---HHHHhhcCC-cccEEEEecC--CCcc-cC-----ce
Confidence 99999999977666555545556678999877 78876444 445555543 2222555656 3542 22 44
Q ss_pred EEEcCCCCCC
Q 006864 363 VTVTPHLGAS 372 (628)
Q Consensus 363 vilTPHig~~ 372 (628)
+.+.|+-...
T Consensus 150 ve~v~g~~t~ 159 (288)
T PRK09260 150 VELIRGLETS 159 (288)
T ss_pred EEEeCCCCCC
Confidence 6677765555
|
|
| >cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase | Back alignment and domain information |
|---|
Probab=98.59 E-value=2.6e-07 Score=92.02 Aligned_cols=108 Identities=28% Similarity=0.358 Sum_probs=79.7
Q ss_pred eeeecCCeEEEEecChhHHHHHHHHHcCCCEEEEECCCCCh-hH-HHHcCCcccCHHHHhc-cCCEEEEcCCCCcccccc
Q 006864 224 GVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPA-DK-ARAVGVELVSFDQALA-TADFISLHMPLNPTTSKI 300 (628)
Q Consensus 224 g~~l~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~-a~~~g~~~~sl~ell~-~aDvV~l~~Plt~~t~~l 300 (628)
+.+++||+++|+|+|++|+.+|++|..+|++|+++|+.... .. ....+.+.++.++++. +||+++.|.. .++
T Consensus 23 ~~~l~gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~~~~~~~~~~~g~~~v~~~~l~~~~~Dv~vp~A~-----~~~ 97 (200)
T cd01075 23 TDSLEGKTVAVQGLGKVGYKLAEHLLEEGAKLIVADINEEAVARAAELFGATVVAPEEIYSVDADVFAPCAL-----GGV 97 (200)
T ss_pred CCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHcCCEEEcchhhccccCCEEEeccc-----ccc
Confidence 56789999999999999999999999999999999987532 22 2233666666777775 7999876654 467
Q ss_pred ccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhCCCe
Q 006864 301 FNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVV 338 (628)
Q Consensus 301 i~~~~l~~mk~gailIN~aRg~~vde~aL~~aL~~g~i 338 (628)
++++.++.|+ .-+++.-+-+.+-|.+ -.+.|++..+
T Consensus 98 I~~~~~~~l~-~~~v~~~AN~~~~~~~-~~~~L~~~Gi 133 (200)
T cd01075 98 INDDTIPQLK-AKAIAGAANNQLADPR-HGQMLHERGI 133 (200)
T ss_pred cCHHHHHHcC-CCEEEECCcCccCCHh-HHHHHHHCCC
Confidence 8888888887 4477777777766533 3455555544
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc |
| >TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating | Back alignment and domain information |
|---|
Probab=98.55 E-value=2.6e-07 Score=103.21 Aligned_cols=119 Identities=18% Similarity=0.217 Sum_probs=91.7
Q ss_pred eEEEEecChhHHHHHHHHHcCCCEEEEECCCCCh-hHHHHc---C--Cc-ccCHHHHh---ccCCEEEEcCCCCcccccc
Q 006864 231 TLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPA-DKARAV---G--VE-LVSFDQAL---ATADFISLHMPLNPTTSKI 300 (628)
Q Consensus 231 tiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~~---g--~~-~~sl~ell---~~aDvV~l~~Plt~~t~~l 300 (628)
.|||||+|.||+.+|++|...|++|.+||+.... +...+. | +. ..+++++. +++|+|++++|-.+.+..+
T Consensus 1 ~IG~IGLG~MG~~mA~nL~~~G~~V~v~drt~~~~~~l~~~~~~g~~~~~~~s~~e~v~~l~~~dvIil~v~~~~~v~~V 80 (467)
T TIGR00873 1 DIGVIGLAVMGSNLALNMADHGFTVSVYNRTPEKTDEFLAEHAKGKKIVGAYSIEEFVQSLERPRKIMLMVKAGAPVDAV 80 (467)
T ss_pred CEEEEeeHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHhhccCCCCceecCCHHHHHhhcCCCCEEEEECCCcHHHHHH
Confidence 3899999999999999999999999999987532 222222 2 22 23677766 4699999999977777777
Q ss_pred ccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhCCCeeEEEeeccCCCC
Q 006864 301 FNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEEP 350 (628)
Q Consensus 301 i~~~~l~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~ga~lDV~~~EP 350 (628)
+ .+.+..+++|.+|||++....-+...+.+.+++..+.....=|.+.++
T Consensus 81 i-~~l~~~L~~g~iIID~gns~~~~t~~~~~~l~~~gi~fvdapVsGG~~ 129 (467)
T TIGR00873 81 I-NQLLPLLEKGDIIIDGGNSHYPDTERRYKELKAKGILFVGSGVSGGEE 129 (467)
T ss_pred H-HHHHhhCCCCCEEEECCCcCHHHHHHHHHHHHhcCCEEEcCCCCCCHH
Confidence 7 456778999999999999998998888899988777544444666554
|
This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason. |
| >PLN02688 pyrroline-5-carboxylate reductase | Back alignment and domain information |
|---|
Probab=98.53 E-value=1.1e-06 Score=90.77 Aligned_cols=102 Identities=22% Similarity=0.294 Sum_probs=75.9
Q ss_pred CeEEEEecChhHHHHHHHHHcCCC----EEEEE-CCCCC-hhHHHHcCCccc-CHHHHhccCCEEEEcCCCCcccccccc
Q 006864 230 KTLAVMGFGKVGSEVARRAKGLGM----NVIAH-DPYAP-ADKARAVGVELV-SFDQALATADFISLHMPLNPTTSKIFN 302 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~G~----~V~~~-d~~~~-~~~a~~~g~~~~-sl~ell~~aDvV~l~~Plt~~t~~li~ 302 (628)
++|||||+|+||+++++.|...|+ +|++| |+... .+.+.+.|+... +..+++++||+|++|+| .+..+.++
T Consensus 1 ~kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~~r~~~~~~~~~~~g~~~~~~~~e~~~~aDvVil~v~-~~~~~~vl- 78 (266)
T PLN02688 1 FRVGFIGAGKMAEAIARGLVASGVVPPSRISTADDSNPARRDVFQSLGVKTAASNTEVVKSSDVIILAVK-PQVVKDVL- 78 (266)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCCcceEEEEeCCCHHHHHHHHHcCCEEeCChHHHHhcCCEEEEEEC-cHHHHHHH-
Confidence 479999999999999999998887 89999 77642 233445677544 78888999999999997 44455555
Q ss_pred HHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhC
Q 006864 303 DETFAKMKKGVRIVNVARGGVIDEEALVRALDS 335 (628)
Q Consensus 303 ~~~l~~mk~gailIN~aRg~~vde~aL~~aL~~ 335 (628)
.+....++++.++|++.-| +..+.+.+.+..
T Consensus 79 ~~l~~~~~~~~~iIs~~~g--~~~~~l~~~~~~ 109 (266)
T PLN02688 79 TELRPLLSKDKLLVSVAAG--ITLADLQEWAGG 109 (266)
T ss_pred HHHHhhcCCCCEEEEecCC--CcHHHHHHHcCC
Confidence 3444567889999988655 366666665543
|
|
| >PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain | Back alignment and domain information |
|---|
Probab=98.53 E-value=1.6e-07 Score=81.76 Aligned_cols=88 Identities=26% Similarity=0.406 Sum_probs=64.2
Q ss_pred eEEEEecChhHHHHHHHHHcCC---CEEE-EECCCCC--hhHHHHcCCccc--CHHHHhccCCEEEEcCCCCcccccccc
Q 006864 231 TLAVMGFGKVGSEVARRAKGLG---MNVI-AHDPYAP--ADKARAVGVELV--SFDQALATADFISLHMPLNPTTSKIFN 302 (628)
Q Consensus 231 tiGIIGlG~IG~~vA~~l~~~G---~~V~-~~d~~~~--~~~a~~~g~~~~--sl~ell~~aDvV~l~~Plt~~t~~li~ 302 (628)
||||||+|+||+.+++.|...| .+|. ++++... .+.+.+.++... +..+++++||+|++++| |+...-+-
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~advvilav~--p~~~~~v~ 78 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEYGVQATADDNEEAAQEADVVILAVK--PQQLPEVL 78 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHCTTEEESEEHHHHHHHTSEEEE-S---GGGHHHHH
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhhccccccCChHHhhccCCEEEEEEC--HHHHHHHH
Confidence 6999999999999999999999 9999 4487753 233455665433 69999999999999999 33222233
Q ss_pred HHHHhcCCCCcEEEEcCCC
Q 006864 303 DETFAKMKKGVRIVNVARG 321 (628)
Q Consensus 303 ~~~l~~mk~gailIN~aRg 321 (628)
.+. ....++.++|++.-|
T Consensus 79 ~~i-~~~~~~~~vis~~ag 96 (96)
T PF03807_consen 79 SEI-PHLLKGKLVISIAAG 96 (96)
T ss_dssp HHH-HHHHTTSEEEEESTT
T ss_pred HHH-hhccCCCEEEEeCCC
Confidence 333 567789999998644
|
It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D .... |
| >TIGR00518 alaDH alanine dehydrogenase | Back alignment and domain information |
|---|
Probab=98.53 E-value=8.7e-07 Score=96.38 Aligned_cols=93 Identities=26% Similarity=0.368 Sum_probs=73.9
Q ss_pred ecCCeEEEEecChhHHHHHHHHHcCCCEEEEECCCCCh-hHH-HHcCCc-------ccCHHHHhccCCEEEEcCCCC-cc
Q 006864 227 LVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPA-DKA-RAVGVE-------LVSFDQALATADFISLHMPLN-PT 296 (628)
Q Consensus 227 l~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a-~~~g~~-------~~sl~ell~~aDvV~l~~Plt-~~ 296 (628)
+.++++.|+|.|.+|+.+++.|+++|++|.++|+.... +.. ...+.. ..++.+.++++|+|+.+++.+ ..
T Consensus 165 l~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~~g~~v~~~~~~~~~l~~~l~~aDvVI~a~~~~g~~ 244 (370)
T TIGR00518 165 VEPGDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQLDAEFGGRIHTRYSNAYEIEDAVKRADLLIGAVLIPGAK 244 (370)
T ss_pred CCCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHhcCceeEeccCCHHHHHHHHccCCEEEEccccCCCC
Confidence 56788999999999999999999999999999987422 122 223321 124678889999999998753 23
Q ss_pred ccccccHHHHhcCCCCcEEEEcC
Q 006864 297 TSKIFNDETFAKMKKGVRIVNVA 319 (628)
Q Consensus 297 t~~li~~~~l~~mk~gailIN~a 319 (628)
+..+++++.++.||++++|||++
T Consensus 245 ~p~lit~~~l~~mk~g~vIvDva 267 (370)
T TIGR00518 245 APKLVSNSLVAQMKPGAVIVDVA 267 (370)
T ss_pred CCcCcCHHHHhcCCCCCEEEEEe
Confidence 56689999999999999999987
|
The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP. |
| >PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.52 E-value=2.2e-07 Score=98.34 Aligned_cols=82 Identities=26% Similarity=0.291 Sum_probs=67.2
Q ss_pred cCCeEEEEecChhHHHHHHHHHcCCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEcCCCCccccccccHHHHh
Q 006864 228 VGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFA 307 (628)
Q Consensus 228 ~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~sl~ell~~aDvV~l~~Plt~~t~~li~~~~l~ 307 (628)
.+++|||||+|.+|+.+|++|...|++|.+||+... .++++++++||+|++++|. +..+.+++. ...
T Consensus 3 ~~m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~~-----------~~~~~~~~~advvi~~vp~-~~~~~v~~~-l~~ 69 (308)
T PRK14619 3 QPKTIAILGAGAWGSTLAGLASANGHRVRVWSRRSG-----------LSLAAVLADADVIVSAVSM-KGVRPVAEQ-VQA 69 (308)
T ss_pred CCCEEEEECccHHHHHHHHHHHHCCCEEEEEeCCCC-----------CCHHHHHhcCCEEEEECCh-HHHHHHHHH-HHH
Confidence 357899999999999999999999999999998642 3678889999999999996 456666633 222
Q ss_pred -cCCCCcEEEEcCCCc
Q 006864 308 -KMKKGVRIVNVARGG 322 (628)
Q Consensus 308 -~mk~gailIN~aRg~ 322 (628)
.+++++++|++++|-
T Consensus 70 ~~~~~~~ivi~~s~gi 85 (308)
T PRK14619 70 LNLPPETIIVTATKGL 85 (308)
T ss_pred hcCCCCcEEEEeCCcc
Confidence 478999999998743
|
|
| >PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.51 E-value=4.4e-07 Score=100.13 Aligned_cols=106 Identities=21% Similarity=0.198 Sum_probs=75.2
Q ss_pred CeEEEEecChhHHHHHHHHHcCCCEEEEECCCCChhHHHHcCCc---ccCHHHH---------------hccCCEEEEcC
Q 006864 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVE---LVSFDQA---------------LATADFISLHM 291 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~---~~sl~el---------------l~~aDvV~l~~ 291 (628)
++|+|||+|.||..+|..|...|++|++||+..........|.. ...++++ +++||+|++|+
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~l~~~~~~g~l~~~~~~~~aDvvii~v 83 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASRQKQVIGVDINQHAVDTINRGEIHIVEPDLDMVVKTAVEGGYLRATTTPEPADAFLIAV 83 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHHHHHHHHCCCCCcCCCCHHHHHHHHhhcCceeeecccccCCEEEEEc
Confidence 68999999999999999999999999999987533222222321 1134444 34799999999
Q ss_pred CCC------ccccccc--cHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhC
Q 006864 292 PLN------PTTSKIF--NDETFAKMKKGVRIVNVARGGVIDEEALVRALDS 335 (628)
Q Consensus 292 Plt------~~t~~li--~~~~l~~mk~gailIN~aRg~~vde~aL~~aL~~ 335 (628)
|.. ++...+. -+.....+++|+++|+.+.-..--.+.+...+.+
T Consensus 84 ptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~pgtt~~~~~~l~~ 135 (415)
T PRK11064 84 PTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILESTSPVGATEQMAEWLAE 135 (415)
T ss_pred CCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCCCCCCHHHHHHHHHHH
Confidence 954 1222332 2445667899999999998777666666666654
|
|
| >KOG1370 consensus S-adenosylhomocysteine hydrolase [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.49 E-value=3.4e-07 Score=94.32 Aligned_cols=103 Identities=31% Similarity=0.479 Sum_probs=85.2
Q ss_pred eeecCCeEEEEecChhHHHHHHHHHcCCCEEEEE--CCCCChhHHHHcCCcccCHHHHhccCCEEEEcCCCCcccccccc
Q 006864 225 VSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAH--DPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFN 302 (628)
Q Consensus 225 ~~l~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~--d~~~~~~~a~~~g~~~~sl~ell~~aDvV~l~~Plt~~t~~li~ 302 (628)
.-+.||.+.|-|||.+|+..|+.|++||.+|++. ||- ...++...|++.++++|+++++|+++.+. ..+.+|.
T Consensus 210 vM~aGKv~Vv~GYGdVGKgCaqaLkg~g~~VivTEiDPI-~ALQAaMeG~~V~tm~ea~~e~difVTtT----Gc~dii~ 284 (434)
T KOG1370|consen 210 VMIAGKVAVVCGYGDVGKGCAQALKGFGARVIVTEIDPI-CALQAAMEGYEVTTLEEAIREVDIFVTTT----GCKDIIT 284 (434)
T ss_pred heecccEEEEeccCccchhHHHHHhhcCcEEEEeccCch-HHHHHHhhccEeeeHHHhhhcCCEEEEcc----CCcchhh
Confidence 3578999999999999999999999999999996 554 34566777999999999999999998854 4788999
Q ss_pred HHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhC
Q 006864 303 DETFAKMKKGVRIVNVARGGVIDEEALVRALDS 335 (628)
Q Consensus 303 ~~~l~~mk~gailIN~aRg~~vde~aL~~aL~~ 335 (628)
.+.|.+||.++++-|++.- |.+-=...|+.
T Consensus 285 ~~H~~~mk~d~IvCN~Ghf---d~EiDv~~L~~ 314 (434)
T KOG1370|consen 285 GEHFDQMKNDAIVCNIGHF---DTEIDVKWLNT 314 (434)
T ss_pred HHHHHhCcCCcEEeccccc---cceeehhhccC
Confidence 9999999999999999753 33333344544
|
|
| >cd04901 ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria | Back alignment and domain information |
|---|
Probab=98.45 E-value=2.4e-07 Score=75.53 Aligned_cols=66 Identities=27% Similarity=0.493 Sum_probs=58.9
Q ss_pred EEEeccCCCCchhhHHhhhhcCCccccceEEeeeecCccEEEEEEeCCCCCHHHHHHHhcccCccccC
Q 006864 561 ILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDEEPNQDSLKEIGKVHFVARIL 628 (628)
Q Consensus 561 Llv~~~D~PGvIa~V~~iL~~~~INIa~m~v~R~~~gg~Al~~i~vD~~~~~~~l~~L~~l~~v~~v~ 628 (628)
+++.+.|+||+++.+++.|+++++||.+|.... .++.|++.++++....++++++|+++++|.+|+
T Consensus 2 ~~~~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~--~~~~a~~~~~~~~~~l~~li~~l~~~~~V~~v~ 67 (69)
T cd04901 2 ILHIHKNVPGVLGQINTILAEHNINIAAQYLQT--RGEIGYVVIDIDSEVSEELLEALRAIPGTIRVR 67 (69)
T ss_pred EEEEecCCCcHHHHHHHHHHHcCCCHHHHhccC--CCCEEEEEEEcCCCCCHHHHHHHHcCCCeEEEE
Confidence 567899999999999999999999999997643 348999999999998899999999999998763
|
The C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In Escherichia coli, the SerA 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. In the homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active site is postulated to involve the tethering of the regulatory domains together to create a rigid quaternary structure with a solvent- |
| >TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit | Back alignment and domain information |
|---|
Probab=98.45 E-value=8.3e-06 Score=91.59 Aligned_cols=177 Identities=20% Similarity=0.270 Sum_probs=113.4
Q ss_pred CCeEEE-EcCCCCCCHHHHHhcCCcceeEEecccccCcccHhHHHhcCceEEcCCCCC--h--------hhHHHHHHHHH
Q 006864 130 QCDALI-VRSGTKVTRSVFEAANGKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIAN--T--------VAAAEHGIALL 198 (628)
Q Consensus 130 ~~d~li-v~~~~~v~~~~l~~~~~~Lk~I~~~g~G~D~iDl~aa~~~GI~V~n~p~~~--~--------~avAE~~l~l~ 198 (628)
++|+|+ ++ +.+.+.++...++--+|+...-.-|.=-++++.++||.+..--... + .++++.+
T Consensus 64 ~adiIlkV~---~P~~~e~~~l~~g~tli~~l~p~~n~~ll~~l~~k~it~ia~E~vprisraq~~d~lssma~iA---- 136 (511)
T TIGR00561 64 QSDIILKVN---APSDAEIAELPAGKALVSFIWPAQNPELMEKLAAKNITVLAMDAVPRISRAQKLDALSSMANIA---- 136 (511)
T ss_pred cCCEEEEeC---CCCHHHHHhcCCCCEEEEEcCccCCHHHHHHHHHcCCEEEEeecccccccCCccCcchhhHHHH----
Confidence 578776 32 3445556666666667776655555555788899999887533211 1 1222222
Q ss_pred HHHHHchhHHHHHHHcCcccccc--cceeeecCCeEEEEecChhHHHHHHHHHcCCCEEEEECCCC-ChhHHHHcCCccc
Q 006864 199 ASMARNVSQADASIKAGKWLRSK--YVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA-PADKARAVGVELV 275 (628)
Q Consensus 199 L~~~R~i~~~~~~~~~g~W~~~~--~~g~~l~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~g~~~~ 275 (628)
-.|-+..+.+.+ |++.... ..| .+.+.++.|+|.|.+|...++.++++|.+|+++|.+. ..+.++++|.+.+
T Consensus 137 --Gy~Avi~Aa~~l--gr~~~g~~taag-~vp~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~lGa~~v 211 (511)
T TIGR00561 137 --GYRAIIEAAHEF--GRFFTGQITAAG-KVPPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSMGAEFL 211 (511)
T ss_pred --HHHHHHHHHHHh--hhhcCCceecCC-CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEE
Confidence 222222222111 1111100 012 3457899999999999999999999999999999875 3455666676542
Q ss_pred --C--------------------------HHHHhccCCEEEEcC--CCCccccccccHHHHhcCCCCcEEEEcC
Q 006864 276 --S--------------------------FDQALATADFISLHM--PLNPTTSKIFNDETFAKMKKGVRIVNVA 319 (628)
Q Consensus 276 --s--------------------------l~ell~~aDvV~l~~--Plt~~t~~li~~~~l~~mk~gailIN~a 319 (628)
+ +.+.++++|+|+.++ |..+ .-.++.++.++.||+|+++||++
T Consensus 212 ~v~~~e~g~~~~gYa~~~s~~~~~~~~~~~~e~~~~~DIVI~TalipG~~-aP~Lit~emv~~MKpGsvIVDlA 284 (511)
T TIGR00561 212 ELDFKEEGGSGDGYAKVMSEEFIAAEMELFAAQAKEVDIIITTALIPGKP-APKLITEEMVDSMKAGSVIVDLA 284 (511)
T ss_pred eccccccccccccceeecCHHHHHHHHHHHHHHhCCCCEEEECcccCCCC-CCeeehHHHHhhCCCCCEEEEee
Confidence 1 445678899998877 3222 23578999999999999999997
|
In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff. |
| >PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.44 E-value=2.8e-06 Score=90.61 Aligned_cols=113 Identities=24% Similarity=0.315 Sum_probs=83.6
Q ss_pred CeEEEEecChhHHHHHHHHHcCCCEEEEECCCCCh-hHHH-----------HcC---------Ccc-cCHHHHhccCCEE
Q 006864 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPA-DKAR-----------AVG---------VEL-VSFDQALATADFI 287 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~-----------~~g---------~~~-~sl~ell~~aDvV 287 (628)
++|||||.|.||..+|..+...|++|.+||+.... +.+. +.+ +.. .+++++++.||+|
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~l~~av~~aDlV 87 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVATIEACVADADFI 87 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecCCHHHHhcCCCEE
Confidence 68999999999999999999999999999987521 1110 111 122 3788999999999
Q ss_pred EEcCCCCccccccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhC-CCeeEEEeecc
Q 006864 288 SLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDS-GVVAQAALDVF 346 (628)
Q Consensus 288 ~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~~vde~aL~~aL~~-g~i~ga~lDV~ 346 (628)
+-++|-+.+.+..+-++.-+.++++++|- ++..+ +.-.++.+.++. .++ .++..|
T Consensus 88 iEavpE~l~vK~~lf~~l~~~~~~~aIla-SnTS~-l~~s~la~~~~~p~R~--~g~Hff 143 (321)
T PRK07066 88 QESAPEREALKLELHERISRAAKPDAIIA-SSTSG-LLPTDFYARATHPERC--VVGHPF 143 (321)
T ss_pred EECCcCCHHHHHHHHHHHHHhCCCCeEEE-ECCCc-cCHHHHHHhcCCcccE--EEEecC
Confidence 99999999988888788888899998554 44333 455666777754 456 444444
|
|
| >PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional | Back alignment and domain information |
|---|
Probab=98.43 E-value=1.6e-06 Score=96.00 Aligned_cols=135 Identities=16% Similarity=0.154 Sum_probs=89.8
Q ss_pred CeEEEEecChhHHHHHHHHHcCCCEEEEECCCCChhHHHHcCC-----------------cccCHHHHhccCCEEEEcCC
Q 006864 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGV-----------------ELVSFDQALATADFISLHMP 292 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~-----------------~~~sl~ell~~aDvV~l~~P 292 (628)
++|||||+|.||..+|..+.. |++|++||.....-.....|. ...+..+.+++||++++|+|
T Consensus 7 mkI~vIGlGyvGlpmA~~la~-~~~V~g~D~~~~~ve~l~~G~~~~~e~~~~~l~~~g~l~~t~~~~~~~~advvii~Vp 85 (425)
T PRK15182 7 VKIAIIGLGYVGLPLAVEFGK-SRQVVGFDVNKKRILELKNGVDVNLETTEEELREARYLKFTSEIEKIKECNFYIITVP 85 (425)
T ss_pred CeEEEECcCcchHHHHHHHhc-CCEEEEEeCCHHHHHHHHCcCCCCCCCCHHHHHhhCCeeEEeCHHHHcCCCEEEEEcC
Confidence 689999999999999999877 799999998753322222332 12333457899999999999
Q ss_pred CCc------ccccccc--HHHHhcCCCCcEEEEcCCCchhcHHHHHHH-HhC--CCeeE-EEeeccCCCCCCCC---Ccc
Q 006864 293 LNP------TTSKIFN--DETFAKMKKGVRIVNVARGGVIDEEALVRA-LDS--GVVAQ-AALDVFTEEPPAKD---SKL 357 (628)
Q Consensus 293 lt~------~t~~li~--~~~l~~mk~gailIN~aRg~~vde~aL~~a-L~~--g~i~g-a~lDV~~~EP~~~~---~~L 357 (628)
... +...++. +.....+++|.++|+.+.-.+-..+.+++. +++ |.-.+ ...=+|.+||.... ..+
T Consensus 86 tp~~~~~~~dl~~v~~a~~~i~~~l~~g~lVI~~STv~pgtt~~~~~~~l~~~~g~~~~~~~~~~~~PE~v~~G~a~~~~ 165 (425)
T PRK15182 86 TPINTYKQPDLTPLIKASETVGTVLNRGDIVVYESTVYPGCTEEECVPILARMSGMTFNQDFYVGYSPERINPGDKKHRL 165 (425)
T ss_pred CCCCCCCCcchHHHHHHHHHHHHhcCCCCEEEEecCCCCcchHHHHHHHHHhccCCCcCCCeeEeeCCCcCCCCcccccc
Confidence 652 2344442 345678999999999999888777655443 333 32111 11114667887543 355
Q ss_pred ccCCcEEE
Q 006864 358 VQHENVTV 365 (628)
Q Consensus 358 ~~~~nvil 365 (628)
...|.++.
T Consensus 166 ~~~~riv~ 173 (425)
T PRK15182 166 TNIKKITS 173 (425)
T ss_pred cCCCeEEE
Confidence 66677754
|
|
| >PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.42 E-value=2.7e-06 Score=89.29 Aligned_cols=129 Identities=19% Similarity=0.278 Sum_probs=85.4
Q ss_pred CeEEEEecChhHHHHHHHHHcCCCEEEEECCCCCh-hHHHH-----------cC-------------Cccc-CHHHHhcc
Q 006864 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPA-DKARA-----------VG-------------VELV-SFDQALAT 283 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~-----------~g-------------~~~~-sl~ell~~ 283 (628)
++|+|||.|.||..+|..+...|++|.+||+.... +.+.+ .| +... +++ .+++
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~ 83 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTATDLE-DLAD 83 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEeeCCHH-HhcC
Confidence 68999999999999999999999999999987422 11110 12 1222 454 5789
Q ss_pred CCEEEEcCCCCccccccccHHHHhcCCCCcEEE-EcCCCchhcHHHHHHHHhC-CCeeEEEeeccCCCCCCCCCccccCC
Q 006864 284 ADFISLHMPLNPTTSKIFNDETFAKMKKGVRIV-NVARGGVIDEEALVRALDS-GVVAQAALDVFTEEPPAKDSKLVQHE 361 (628)
Q Consensus 284 aDvV~l~~Plt~~t~~li~~~~l~~mk~gailI-N~aRg~~vde~aL~~aL~~-g~i~ga~lDV~~~EP~~~~~~L~~~~ 361 (628)
||+|+.++|-..+.+..+-.+....++++++|+ |++.-.+ ..+.+.+.. .++ .++..+. |.+ -.++
T Consensus 84 aD~Vieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~---s~la~~~~~~~r~--~g~h~~~--p~~-~~~~---- 151 (292)
T PRK07530 84 CDLVIEAATEDETVKRKIFAQLCPVLKPEAILATNTSSISI---TRLASATDRPERF--IGIHFMN--PVP-VMKL---- 151 (292)
T ss_pred CCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCH---HHHHhhcCCcccE--EEeeccC--Ccc-cCce----
Confidence 999999999776655544456667789999998 6654433 356776643 344 4445554 332 1233
Q ss_pred cEEEcCCCCCC
Q 006864 362 NVTVTPHLGAS 372 (628)
Q Consensus 362 nvilTPHig~~ 372 (628)
+-+.+|.+++
T Consensus 152 -vei~~g~~t~ 161 (292)
T PRK07530 152 -VELIRGIATD 161 (292)
T ss_pred -EEEeCCCCCC
Confidence 4467776554
|
|
| >PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=98.40 E-value=6.5e-07 Score=94.08 Aligned_cols=80 Identities=18% Similarity=0.204 Sum_probs=67.9
Q ss_pred ceeeecCCeEEEEecC-hhHHHHHHHHHcCCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEcCCCCccccccc
Q 006864 223 VGVSLVGKTLAVMGFG-KVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIF 301 (628)
Q Consensus 223 ~g~~l~GktiGIIGlG-~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~sl~ell~~aDvV~l~~Plt~~t~~li 301 (628)
.+.++.||+++|||.| .+|+.+|.+|...|+.|..|++... ++.++.++||+|+++++.. +++
T Consensus 153 ~~i~l~Gk~V~vIG~s~ivG~PmA~~L~~~gatVtv~~~~t~------------~l~e~~~~ADIVIsavg~~----~~v 216 (301)
T PRK14194 153 TCGDLTGKHAVVIGRSNIVGKPMAALLLQAHCSVTVVHSRST------------DAKALCRQADIVVAAVGRP----RLI 216 (301)
T ss_pred hCCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEECCCCC------------CHHHHHhcCCEEEEecCCh----hcc
Confidence 4679999999999996 9999999999999999999986532 6888999999999999844 345
Q ss_pred cHHHHhcCCCCcEEEEcCCC
Q 006864 302 NDETFAKMKKGVRIVNVARG 321 (628)
Q Consensus 302 ~~~~l~~mk~gailIN~aRg 321 (628)
.... +|+|+++||++--
T Consensus 217 ~~~~---ik~GaiVIDvgin 233 (301)
T PRK14194 217 DADW---LKPGAVVIDVGIN 233 (301)
T ss_pred cHhh---ccCCcEEEEeccc
Confidence 4443 7999999999843
|
|
| >PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.37 E-value=4.1e-06 Score=88.01 Aligned_cols=167 Identities=17% Similarity=0.190 Sum_probs=104.2
Q ss_pred CeEEEEecChhHHHHHHHHHcCCCEEEEECCCCCh-hH-----------HHHcCC-------------cc-cCHHHHhcc
Q 006864 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPA-DK-----------ARAVGV-------------EL-VSFDQALAT 283 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~-----------a~~~g~-------------~~-~sl~ell~~ 283 (628)
++|||||.|.||..+|..+...|++|+.||+.... +. ..+.|. .. .++ +.++.
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~-~~~~~ 84 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTTDL-GDFAD 84 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeCCH-HHhCC
Confidence 48999999999999999999999999999987532 11 122221 12 256 55899
Q ss_pred CCEEEEcCCCCccccccccHHHHhcC-CCCcEEEEcCCCchhcHHHHHHHHhC-CCeeEEEeeccCCCCCCCCCccccCC
Q 006864 284 ADFISLHMPLNPTTSKIFNDETFAKM-KKGVRIVNVARGGVIDEEALVRALDS-GVVAQAALDVFTEEPPAKDSKLVQHE 361 (628)
Q Consensus 284 aDvV~l~~Plt~~t~~li~~~~l~~m-k~gailIN~aRg~~vde~aL~~aL~~-g~i~ga~lDV~~~EP~~~~~~L~~~~ 361 (628)
||+|+-++|-+.+.+.-+-...-+.+ +++++|++.+.+-.+..- ..+++. .++ .++..|.+-| -.+
T Consensus 85 ~d~ViEav~E~~~~K~~l~~~l~~~~~~~~~il~snTS~~~~~~l--a~~~~~~~r~--~g~hf~~P~~---~~~----- 152 (286)
T PRK07819 85 RQLVIEAVVEDEAVKTEIFAELDKVVTDPDAVLASNTSSIPIMKL--AAATKRPGRV--LGLHFFNPVP---VLP----- 152 (286)
T ss_pred CCEEEEecccCHHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHH--HhhcCCCccE--EEEecCCCcc---cCc-----
Confidence 99999999988888777655444445 899999988766544443 344432 344 4555555322 123
Q ss_pred cEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHc---CCCCCCcccCCCCCcccccccccHHHH
Q 006864 362 NVTVTPHLGASTKEAQEGVAIEIAEAVVGALR---GELSATAINAPMVPSEVLSELAPYVVL 420 (628)
Q Consensus 362 nvilTPHig~~T~ea~~~~~~~~~~~i~~~l~---g~~~~~~vn~p~~~~~~~~~~~p~~~l 420 (628)
-+=++||.+++ .++.+.+..++. |+.+..+-..|.+....+ +.|++.-
T Consensus 153 lvElv~~~~T~---------~~~~~~~~~~~~~~lgk~pv~v~d~pGfi~nRi--~~~~~~E 203 (286)
T PRK07819 153 LVELVPTLVTS---------EATVARAEEFASDVLGKQVVRAQDRSGFVVNAL--LVPYLLS 203 (286)
T ss_pred eEEEeCCCCCC---------HHHHHHHHHHHHHhCCCCceEecCCCChHHHHH--HHHHHHH
Confidence 34667776666 445566666643 444433323354444333 3344443
|
|
| >cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase | Back alignment and domain information |
|---|
Probab=98.35 E-value=2.8e-06 Score=80.13 Aligned_cols=107 Identities=20% Similarity=0.259 Sum_probs=77.3
Q ss_pred eecCCeEEEEecChhHHHHHHHHHcCC-CEEEEECCCCCh--hHHHHcCC-----cccCHHHHhccCCEEEEcCCCCcc-
Q 006864 226 SLVGKTLAVMGFGKVGSEVARRAKGLG-MNVIAHDPYAPA--DKARAVGV-----ELVSFDQALATADFISLHMPLNPT- 296 (628)
Q Consensus 226 ~l~GktiGIIGlG~IG~~vA~~l~~~G-~~V~~~d~~~~~--~~a~~~g~-----~~~sl~ell~~aDvV~l~~Plt~~- 296 (628)
++.+++++|+|+|.||+.+++.+...| .+|.++|+.... ..+...+. ...+++++++++|+|++++|....
T Consensus 16 ~~~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvi~~~~~~~~~ 95 (155)
T cd01065 16 ELKGKKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGELGIAIAYLDLEELLAEADLIINTTPVGMKP 95 (155)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhcccceeecchhhccccCCEEEeCcCCCCCC
Confidence 466899999999999999999999886 789999987532 22333332 334778889999999999997653
Q ss_pred ccc-cccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhCCC
Q 006864 297 TSK-IFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGV 337 (628)
Q Consensus 297 t~~-li~~~~l~~mk~gailIN~aRg~~vde~aL~~aL~~g~ 337 (628)
... .+... .++++.+++|++..+... .+.+.+++..
T Consensus 96 ~~~~~~~~~---~~~~~~~v~D~~~~~~~~--~l~~~~~~~g 132 (155)
T cd01065 96 GDELPLPPS---LLKPGGVVYDVVYNPLET--PLLKEARALG 132 (155)
T ss_pred CCCCCCCHH---HcCCCCEEEEcCcCCCCC--HHHHHHHHCC
Confidence 122 23332 368999999998765443 6666666643
|
Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann |
| >PRK07679 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=98.35 E-value=2.6e-06 Score=88.97 Aligned_cols=104 Identities=11% Similarity=0.169 Sum_probs=74.7
Q ss_pred cCCeEEEEecChhHHHHHHHHHcCC----CEEEEECCCCCh--hH-HHHcCCccc-CHHHHhccCCEEEEcCCCCccccc
Q 006864 228 VGKTLAVMGFGKVGSEVARRAKGLG----MNVIAHDPYAPA--DK-ARAVGVELV-SFDQALATADFISLHMPLNPTTSK 299 (628)
Q Consensus 228 ~GktiGIIGlG~IG~~vA~~l~~~G----~~V~~~d~~~~~--~~-a~~~g~~~~-sl~ell~~aDvV~l~~Plt~~t~~ 299 (628)
.+++|||||+|+||+++|+.|...| .+|++||+.... +. ....|+... +..+++++||+|++++| .++...
T Consensus 2 ~~mkI~~IG~G~mG~aia~~l~~~g~~~~~~v~v~~r~~~~~~~~l~~~~g~~~~~~~~e~~~~aDvVilav~-p~~~~~ 80 (279)
T PRK07679 2 SIQNISFLGAGSIAEAIIGGLLHANVVKGEQITVSNRSNETRLQELHQKYGVKGTHNKKELLTDANILFLAMK-PKDVAE 80 (279)
T ss_pred CCCEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCCHHHHHHHHHhcCceEeCCHHHHHhcCCEEEEEeC-HHHHHH
Confidence 3578999999999999999998777 789999986421 22 233466543 78888999999999999 333444
Q ss_pred cccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhC
Q 006864 300 IFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDS 335 (628)
Q Consensus 300 li~~~~l~~mk~gailIN~aRg~~vde~aL~~aL~~ 335 (628)
.+ .+....++++.+||++.-| +..+.+.+.+..
T Consensus 81 vl-~~l~~~~~~~~liIs~~aG--i~~~~l~~~~~~ 113 (279)
T PRK07679 81 AL-IPFKEYIHNNQLIISLLAG--VSTHSIRNLLQK 113 (279)
T ss_pred HH-HHHHhhcCCCCEEEEECCC--CCHHHHHHHcCC
Confidence 44 3444557889999998644 356666666543
|
|
| >PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.31 E-value=4.4e-06 Score=88.56 Aligned_cols=131 Identities=18% Similarity=0.176 Sum_probs=81.5
Q ss_pred CeEEEEecChhHHHHHHHHHcCCCEEEEECCCCCh-hH-----------HHHcCC-------------cc-cCHHHHhcc
Q 006864 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPA-DK-----------ARAVGV-------------EL-VSFDQALAT 283 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~-----------a~~~g~-------------~~-~sl~ell~~ 283 (628)
++|+|||+|.||..+|..|...|++|.+||+.... +. ..+.|. .. .++.+++++
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~~~~~~~a~~~ 82 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARAGHEVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRVTDSLADAVAD 82 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHCCCeeEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEEECcHHHhhCC
Confidence 47999999999999999999999999999987421 11 112332 22 378889999
Q ss_pred CCEEEEcCCCCccccccccHHHHhc-CCCCcEEEEcCCCchhcHHHHHHHHhCCCeeEEEeeccCCCCCCCCCccccCCc
Q 006864 284 ADFISLHMPLNPTTSKIFNDETFAK-MKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHEN 362 (628)
Q Consensus 284 aDvV~l~~Plt~~t~~li~~~~l~~-mk~gailIN~aRg~~vde~aL~~aL~~g~i~ga~lDV~~~EP~~~~~~L~~~~n 362 (628)
||+|+.++|-..+.+..+-.+ ++. +++.+++..... ......+.+.+..... ...| .|.. |-+-.+=
T Consensus 83 ad~Vi~avpe~~~~k~~~~~~-l~~~~~~~~ii~ssts--~~~~~~la~~~~~~~~--~~~~----hp~~---p~~~~~l 150 (308)
T PRK06129 83 ADYVQESAPENLELKRALFAE-LDALAPPHAILASSTS--ALLASAFTEHLAGRER--CLVA----HPIN---PPYLIPV 150 (308)
T ss_pred CCEEEECCcCCHHHHHHHHHH-HHHhCCCcceEEEeCC--CCCHHHHHHhcCCccc--EEEE----ecCC---CcccCce
Confidence 999999999665444333222 333 455555543333 3345567777754321 2222 2221 1111234
Q ss_pred EEEcCCCCCC
Q 006864 363 VTVTPHLGAS 372 (628)
Q Consensus 363 vilTPHig~~ 372 (628)
+.++||-++.
T Consensus 151 veiv~~~~t~ 160 (308)
T PRK06129 151 VEVVPAPWTA 160 (308)
T ss_pred EEEeCCCCCC
Confidence 6799987766
|
|
| >PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.31 E-value=6.5e-06 Score=85.99 Aligned_cols=130 Identities=20% Similarity=0.183 Sum_probs=85.1
Q ss_pred CeEEEEecChhHHHHHHHHHcCCCEEEEECCCCChh------------HHHHcC-------------Cccc-CHHHHhcc
Q 006864 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPAD------------KARAVG-------------VELV-SFDQALAT 283 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~------------~a~~~g-------------~~~~-sl~ell~~ 283 (628)
++|+|||.|.||..+|..+...|++|++||+..... ...+.| +... +++ .+++
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~~~~~-~~~~ 82 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTTDLD-DLKD 82 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHH-Hhcc
Confidence 579999999999999999999999999999764221 111222 1212 454 4799
Q ss_pred CCEEEEcCCCCccccccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhCC-CeeEEEeeccCCCCCCCCCccccCCc
Q 006864 284 ADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSG-VVAQAALDVFTEEPPAKDSKLVQHEN 362 (628)
Q Consensus 284 aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~~vde~aL~~aL~~g-~i~ga~lDV~~~EP~~~~~~L~~~~n 362 (628)
||+|++++|-..+.+.-+-++..+.++++++|+....| +....|.+.+... ++.|+ . ...|.+ -.++
T Consensus 83 aDlVi~av~e~~~~k~~~~~~l~~~~~~~~il~s~ts~--~~~~~la~~~~~~~r~ig~--h--~~~P~~-~~~~----- 150 (282)
T PRK05808 83 ADLVIEAATENMDLKKKIFAQLDEIAKPEAILATNTSS--LSITELAAATKRPDKVIGM--H--FFNPVP-VMKL----- 150 (282)
T ss_pred CCeeeecccccHHHHHHHHHHHHhhCCCCcEEEECCCC--CCHHHHHHhhCCCcceEEe--e--ccCCcc-cCcc-----
Confidence 99999999977666654445566678999998544444 4555777777433 45333 3 333322 2233
Q ss_pred EEEcCCCCCC
Q 006864 363 VTVTPHLGAS 372 (628)
Q Consensus 363 vilTPHig~~ 372 (628)
+-++|+-+..
T Consensus 151 vev~~g~~t~ 160 (282)
T PRK05808 151 VEIIRGLATS 160 (282)
T ss_pred EEEeCCCCCC
Confidence 3477775544
|
|
| >PRK12491 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=98.30 E-value=1.6e-06 Score=90.45 Aligned_cols=102 Identities=18% Similarity=0.317 Sum_probs=75.7
Q ss_pred CeEEEEecChhHHHHHHHHHcCCC----EEEEECCCCCh-hHHH-HcCCccc-CHHHHhccCCEEEEcCCCCcccccccc
Q 006864 230 KTLAVMGFGKVGSEVARRAKGLGM----NVIAHDPYAPA-DKAR-AVGVELV-SFDQALATADFISLHMPLNPTTSKIFN 302 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~G~----~V~~~d~~~~~-~~a~-~~g~~~~-sl~ell~~aDvV~l~~Plt~~t~~li~ 302 (628)
++|||||+|+||+++++.|...|+ +|++||+.... +... +.|+... +..+++++||+|++|+| ......++
T Consensus 3 ~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r~~~~~~~l~~~~g~~~~~~~~e~~~~aDiIiLavk-P~~~~~vl- 80 (272)
T PRK12491 3 KQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLNVSNLKNASDKYGITITTNNNEVANSADILILSIK-PDLYSSVI- 80 (272)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCCCceEEEECCCHHHHHHHHHhcCcEEeCCcHHHHhhCCEEEEEeC-hHHHHHHH-
Confidence 589999999999999999987664 79999987532 2233 3676544 67889999999999999 34455555
Q ss_pred HHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhC
Q 006864 303 DETFAKMKKGVRIVNVARGGVIDEEALVRALDS 335 (628)
Q Consensus 303 ~~~l~~mk~gailIN~aRg~~vde~aL~~aL~~ 335 (628)
.+.-..++++.++|++.-| ++.+.|.+.+..
T Consensus 81 ~~l~~~~~~~~lvISi~AG--i~i~~l~~~l~~ 111 (272)
T PRK12491 81 NQIKDQIKNDVIVVTIAAG--KSIKSTENEFDR 111 (272)
T ss_pred HHHHHhhcCCcEEEEeCCC--CcHHHHHHhcCC
Confidence 3343456888999999865 566667776643
|
|
| >PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=98.28 E-value=2e-06 Score=89.78 Aligned_cols=81 Identities=17% Similarity=0.295 Sum_probs=69.5
Q ss_pred ceeeecCCeEEEEecChh-HHHHHHHHHcCCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEcCCCCccccccc
Q 006864 223 VGVSLVGKTLAVMGFGKV-GSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIF 301 (628)
Q Consensus 223 ~g~~l~GktiGIIGlG~I-G~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~sl~ell~~aDvV~l~~Plt~~t~~li 301 (628)
.+.++.||++.|||.|.+ |+.+|..|...|+.|..++... -++.+.+++||+|+.++| +.+++
T Consensus 152 ~~i~l~Gk~vvViGrs~iVGkPla~lL~~~~atVt~~hs~t------------~~l~~~~~~ADIVV~avG----~~~~i 215 (285)
T PRK14189 152 IGIPLRGAHAVVIGRSNIVGKPMAMLLLQAGATVTICHSKT------------RDLAAHTRQADIVVAAVG----KRNVL 215 (285)
T ss_pred cCCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEecCCC------------CCHHHHhhhCCEEEEcCC----CcCcc
Confidence 467899999999999999 9999999999999999876431 257889999999999999 45788
Q ss_pred cHHHHhcCCCCcEEEEcCCCc
Q 006864 302 NDETFAKMKKGVRIVNVARGG 322 (628)
Q Consensus 302 ~~~~l~~mk~gailIN~aRg~ 322 (628)
+. +++|+|+++||++--.
T Consensus 216 ~~---~~ik~gavVIDVGin~ 233 (285)
T PRK14189 216 TA---DMVKPGATVIDVGMNR 233 (285)
T ss_pred CH---HHcCCCCEEEEccccc
Confidence 87 5679999999998543
|
|
| >PRK13302 putative L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.28 E-value=2.7e-06 Score=88.74 Aligned_cols=106 Identities=16% Similarity=0.224 Sum_probs=77.1
Q ss_pred cCCeEEEEecChhHHHHHHHHHc--CCCEEE-EECCCCCh--hHHHHcCC-c-ccCHHHHhccCCEEEEcCCCCcccccc
Q 006864 228 VGKTLAVMGFGKVGSEVARRAKG--LGMNVI-AHDPYAPA--DKARAVGV-E-LVSFDQALATADFISLHMPLNPTTSKI 300 (628)
Q Consensus 228 ~GktiGIIGlG~IG~~vA~~l~~--~G~~V~-~~d~~~~~--~~a~~~g~-~-~~sl~ell~~aDvV~l~~Plt~~t~~l 300 (628)
...+|||||+|+||+.+++.+.. .++++. +||+.... +.+...+. . +.++++++.++|+|++|+|... ..-
T Consensus 5 ~~irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr~~~~a~~~a~~~g~~~~~~~~eell~~~D~Vvi~tp~~~--h~e 82 (271)
T PRK13302 5 PELRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVRDPQRHADFIWGLRRPPPVVPLDQLATHADIVVEAAPASV--LRA 82 (271)
T ss_pred CeeEEEEECccHHHHHHHHHHHhcCCCeEEEEEECCCHHHHHHHHHhcCCCcccCCHHHHhcCCCEEEECCCcHH--HHH
Confidence 34789999999999999999985 478876 57876422 22334453 2 3589999999999999999432 222
Q ss_pred ccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhCCCe
Q 006864 301 FNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVV 338 (628)
Q Consensus 301 i~~~~l~~mk~gailIN~aRg~~vde~aL~~aL~~g~i 338 (628)
+. ...++.|.-++..+.|.+.+.++|.++.+++..
T Consensus 83 ~~---~~aL~aGk~Vi~~s~gal~~~~~L~~~A~~~g~ 117 (271)
T PRK13302 83 IV---EPVLAAGKKAIVLSVGALLRNEDLIDLARQNGG 117 (271)
T ss_pred HH---HHHHHcCCcEEEecchhHHhHHHHHHHHHHcCC
Confidence 22 333566777777788888888999998877543
|
|
| >cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit | Back alignment and domain information |
|---|
Probab=98.27 E-value=2.5e-06 Score=68.95 Aligned_cols=68 Identities=29% Similarity=0.603 Sum_probs=59.5
Q ss_pred EEEEeccCCCCchhhHHhhhhcCCccccceEEeeeecCccEEEEEEeCCCCCHHHHHHHhcccCcccc
Q 006864 560 LILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDEEPNQDSLKEIGKVHFVARI 627 (628)
Q Consensus 560 ~Llv~~~D~PGvIa~V~~iL~~~~INIa~m~v~R~~~gg~Al~~i~vD~~~~~~~l~~L~~l~~v~~v 627 (628)
+|.+.+.|+||+++.++..|+++++||.+|.......++.+.+.+.++....++++++|+++++|.+|
T Consensus 1 ~l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~i~i~v~~~~~~~~i~~l~~~~~v~~v 68 (71)
T cd04903 1 TLIVVHKDKPGAIAKVTSVLADHEINIAFMRVSRKEKGDQALMVIEVDQPIDEEVIEEIKKIPNIHQV 68 (71)
T ss_pred CEEEEeCCCCChHHHHHHHHHHcCcCeeeeEEEeccCCCeEEEEEEeCCCCCHHHHHHHHcCCCceEE
Confidence 46678899999999999999999999999988653346788888999988788999999999999876
|
The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains. |
| >PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.26 E-value=9.4e-06 Score=91.83 Aligned_cols=129 Identities=24% Similarity=0.268 Sum_probs=90.2
Q ss_pred CeEEEEecChhHHHHHHHHHcCCCEEEEECCCCCh-hH-----------HHHcC-------------Ccc-cCHHHHhcc
Q 006864 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPA-DK-----------ARAVG-------------VEL-VSFDQALAT 283 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~-----------a~~~g-------------~~~-~sl~ell~~ 283 (628)
++|||||.|.||+.+|..+...|++|..||+.... +. ..+.| +.. .++++ +++
T Consensus 8 ~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~-~~~ 86 (507)
T PRK08268 8 ATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRPVEALAD-LAD 86 (507)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHH-hCC
Confidence 68999999999999999999999999999987522 22 12233 222 26655 569
Q ss_pred CCEEEEcCCCCccccccccHHHHhcCCCCcEE-EEcCCCchhcHHHHHHHHhC-CCeeEEEeeccCCCCCCCCCccccCC
Q 006864 284 ADFISLHMPLNPTTSKIFNDETFAKMKKGVRI-VNVARGGVIDEEALVRALDS-GVVAQAALDVFTEEPPAKDSKLVQHE 361 (628)
Q Consensus 284 aDvV~l~~Plt~~t~~li~~~~l~~mk~gail-IN~aRg~~vde~aL~~aL~~-g~i~ga~lDV~~~EP~~~~~~L~~~~ 361 (628)
||+|+-++|-..+.+..+-.+.-..++++++| +|++.-.+ ..+..+++. .++ .++..|.+-|. .+
T Consensus 87 aDlViEav~E~~~vK~~vf~~l~~~~~~~ailasntStl~i---~~la~~~~~p~r~--~G~hff~Pa~v---~~----- 153 (507)
T PRK08268 87 CDLVVEAIVERLDVKQALFAQLEAIVSPDCILATNTSSLSI---TAIAAALKHPERV--AGLHFFNPVPL---MK----- 153 (507)
T ss_pred CCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCH---HHHHhhcCCcccE--EEEeecCCccc---Ce-----
Confidence 99999999988888877655555557899999 59887665 356666653 355 55666664433 23
Q ss_pred cEEEcCCCCCC
Q 006864 362 NVTVTPHLGAS 372 (628)
Q Consensus 362 nvilTPHig~~ 372 (628)
=+.+.+|-.++
T Consensus 154 LvEvv~g~~Ts 164 (507)
T PRK08268 154 LVEVVSGLATD 164 (507)
T ss_pred eEEEeCCCCCC
Confidence 35566665554
|
|
| >PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.26 E-value=1.3e-05 Score=84.10 Aligned_cols=113 Identities=22% Similarity=0.271 Sum_probs=77.3
Q ss_pred CeEEEEecChhHHHHHHHHHcCCCEEEEECCCCCh-hHHHH--------------cCC-------------ccc-CHHHH
Q 006864 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPA-DKARA--------------VGV-------------ELV-SFDQA 280 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~--------------~g~-------------~~~-sl~el 280 (628)
++|+|||.|.||..+|..+...|++|++||+.... +.+.+ .+. ... ++ +.
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~ 82 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTSTSY-ES 82 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEeeCCH-HH
Confidence 68999999999999999999999999999987522 11100 011 112 34 56
Q ss_pred hccCCEEEEcCCCCccccccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhC-CCeeEEEeeccC
Q 006864 281 LATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDS-GVVAQAALDVFT 347 (628)
Q Consensus 281 l~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~~vde~aL~~aL~~-g~i~ga~lDV~~ 347 (628)
+++||+|+.++|-..+.+.-+-++.-..++++++|+.+..| +....+.+.+.. .++ .++..|.
T Consensus 83 ~~~aDlVieav~e~~~~k~~~~~~l~~~~~~~~il~S~tsg--~~~~~la~~~~~~~r~--ig~hf~~ 146 (291)
T PRK06035 83 LSDADFIVEAVPEKLDLKRKVFAELERNVSPETIIASNTSG--IMIAEIATALERKDRF--IGMHWFN 146 (291)
T ss_pred hCCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEEcCCC--CCHHHHHhhcCCcccE--EEEecCC
Confidence 79999999999966554444434444567899999887766 355666677653 345 4444444
|
|
| >cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH) | Back alignment and domain information |
|---|
Probab=98.25 E-value=2.6e-06 Score=68.64 Aligned_cols=68 Identities=37% Similarity=0.603 Sum_probs=60.6
Q ss_pred EEEeccCCCCchhhHHhhhhcCCccccceEEeeeecCccEEEEEEeCCCCCHHHHHHHhcccCccccC
Q 006864 561 ILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDEEPNQDSLKEIGKVHFVARIL 628 (628)
Q Consensus 561 Llv~~~D~PGvIa~V~~iL~~~~INIa~m~v~R~~~gg~Al~~i~vD~~~~~~~l~~L~~l~~v~~v~ 628 (628)
|.+...|+||+++.|+.+|+++++||..+.+.+...++.+.+.+.++.....+++++|+++++|.+|+
T Consensus 2 l~v~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~l~~~~~V~~v~ 69 (71)
T cd04879 2 LLIVHKDVPGVIGKVGTILGEHGINIAAMQVGRKEKGGIAYMVLDVDSPVPEEVLEELKALPGIIRVR 69 (71)
T ss_pred EEEEecCCCCHHHHHHHHHHhcCCCeeeEEEeccCCCCEEEEEEEcCCCCCHHHHHHHHcCCCeEEEE
Confidence 56788999999999999999999999999997765458899999998887789999999999998763
|
ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active |
| >TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase | Back alignment and domain information |
|---|
Probab=98.24 E-value=1.1e-05 Score=88.80 Aligned_cols=102 Identities=23% Similarity=0.295 Sum_probs=71.6
Q ss_pred CeEEEEecChhHHHHHHHHHcCCCEEEEECCCCChhHHHH--------------------cC-Ccc-cCHHHHhccCCEE
Q 006864 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARA--------------------VG-VEL-VSFDQALATADFI 287 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~--------------------~g-~~~-~sl~ell~~aDvV 287 (628)
++|||||+|.+|..+|..|...|++|++||+....-.... .| +.. .++++++++||+|
T Consensus 1 mkI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~g~l~~~~~~~~~~~~advv 80 (411)
T TIGR03026 1 MKIAVIGLGYVGLPLAALLADLGHEVTGVDIDQEKVDKLNKGKSPIYEPGLDELLAKALAAGRLRATTDYEDAIRDADVI 80 (411)
T ss_pred CEEEEECCCchhHHHHHHHHhcCCeEEEEECCHHHHHHhhcCCCCCCCCCHHHHHHHhhhcCCeEEECCHHHHHhhCCEE
Confidence 3799999999999999999999999999998643211111 13 222 2678889999999
Q ss_pred EEcCCCCccc------ccccc--HHHHhcCCCCcEEEEcCCCchhcHHHHHH
Q 006864 288 SLHMPLNPTT------SKIFN--DETFAKMKKGVRIVNVARGGVIDEEALVR 331 (628)
Q Consensus 288 ~l~~Plt~~t------~~li~--~~~l~~mk~gailIN~aRg~~vde~aL~~ 331 (628)
++|+|..... ..+.. ......+++|.++|+++.-.+=..+.+.+
T Consensus 81 ii~vpt~~~~~~~~d~~~v~~~~~~i~~~l~~g~lvi~~STv~pgt~~~l~~ 132 (411)
T TIGR03026 81 IICVPTPLKEDGSPDLSYVESAAETIAKHLRKGATVVLESTVPPGTTEEVVK 132 (411)
T ss_pred EEEeCCCCCCCCCcChHHHHHHHHHHHHhcCCCCEEEEeCcCCCCchHHHHH
Confidence 9999954321 11221 34456689999999998654444455543
|
All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively. |
| >TIGR00720 sda_mono L-serine dehydratase, iron-sulfur-dependent, single chain form | Back alignment and domain information |
|---|
Probab=98.24 E-value=4.7e-06 Score=91.46 Aligned_cols=135 Identities=10% Similarity=0.046 Sum_probs=88.9
Q ss_pred CceEEEEEEeecCCCCCCCcccchHHHHHhhccccccCcccccc------------hHhHHhhcCceEEEEEeec--CCC
Q 006864 437 GIKSVKLIYRSARDPDDLDTRILRAMITKGIIEPISASFINLVN------------ADFTAKQKGLRISEERVVA--DSS 502 (628)
Q Consensus 437 ~~~~v~i~~~Gs~a~~~~~~~~~~~a~l~GlL~~~~~~~vnlvN------------A~~iAke~GI~i~~~~~~~--~~~ 502 (628)
.++++++.++|||+ .|.++|++|+|++.||+ ++.+++++... .+.++.+++|.+.+.+... ...
T Consensus 41 ~~~rv~v~LyGSLA-~TGkGHgTD~Avl~GL~-G~~P~~vd~~~~~~~~~~~~~~~~l~l~~~~~i~f~~~~di~f~~~~ 118 (455)
T TIGR00720 41 QVTRVQVDLYGSLA-LTGKGHLTDIAILMGLA-GIYPNTVDIDTKKGFLHEVLENKVLKLAGQHHVPFDYANDLIFHNKP 118 (455)
T ss_pred CCcEEEEEEEchhh-hcCCCccccHHHHHHhc-CCCCCCcChhhhHHHHHHHHhcCeeecCCCCccccCcccceeeCCCC
Confidence 58999999999999 99999999999999999 55666676663 3345667888877653221 011
Q ss_pred CCCCCceEEEEEEecccccceeeCCCcE-EEEEEEEEC-CeeEEEEECceeEEeecCCcEEEEeccCCC---CchhhHHh
Q 006864 503 PEFPIDSIQVQLSNVDSKFAAAVSENGE-ISIEGKVKF-GIPHLTRVGSFGVDASLEGNLILCRQVDQP---GMIGKVGN 577 (628)
Q Consensus 503 ~~~~~ntv~v~l~~~~~~~~~~~~~~~~-~~v~Gt~~g-G~~~I~~Idgf~Vd~~~~~~~Llv~~~D~P---GvIa~V~~ 577 (628)
...|||+++++..+ .++.. .+.++.|+| |.++.-+ .+.-+- .. ..+.| --...+..
T Consensus 119 lp~HPNgm~f~a~d---------~~g~~l~~~t~ySIGGGfI~~~~--~~~~~~-~~-------~~~~p~~f~s~~ell~ 179 (455)
T TIGR00720 119 LPLHENGMTITAFN---------SKNEVLYEETYYSVGGGFIVTEK--HFGSEE-DN-------NVSVAYPFKSAKELLE 179 (455)
T ss_pred CCCCCCeeEEEEEe---------CCCCEEEEEEEEEcCCceeeecc--cccccc-cc-------CCCCCcCCCCHHHHHH
Confidence 23699999999983 34443 478899998 6665331 111110 00 11222 23445667
Q ss_pred hhhcCCccccceEEe
Q 006864 578 ILGEHNVNVNFMSVG 592 (628)
Q Consensus 578 iL~~~~INIa~m~v~ 592 (628)
+-.+++++|..+-+.
T Consensus 180 ~~~~~~~~i~e~v~~ 194 (455)
T TIGR00720 180 LCQKHGKSISEIALL 194 (455)
T ss_pred HHHHhCCCHHHHHHH
Confidence 777888888877553
|
This enzyme is also called serine deaminase and L-serine dehydratase 1. L-serine ammonia-lyase converts serine into pyruvate in the gluconeogenesis pathway from serine. This enzyme is comprised of a single chain in Escherichia coli, Mycobacterium tuberculosis, and several other species, but has separate alpha and beta chains in Bacillus subtilis and related species. The beta and alpha chains are homologous to the N-terminal and C-terminal regions, respectively, but are rather deeply branched in a UPGMA tree. This enzyme requires iron and dithiothreitol for activation in vitro, and is a predicted 4Fe-4S protein. Escherichia coli Pseudomonas aeruginosa have two copies of this protein. |
| >PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=98.23 E-value=3.9e-05 Score=86.44 Aligned_cols=185 Identities=21% Similarity=0.246 Sum_probs=113.0
Q ss_pred CCeEEE-EcCCCCCCHHHHHhcCCcceeEEecccccCcccHhHHHhcCceEEcCCCCCh--hhHHHHHHHHHH--HHHHc
Q 006864 130 QCDALI-VRSGTKVTRSVFEAANGKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANT--VAAAEHGIALLA--SMARN 204 (628)
Q Consensus 130 ~~d~li-v~~~~~v~~~~l~~~~~~Lk~I~~~g~G~D~iDl~aa~~~GI~V~n~p~~~~--~avAE~~l~l~L--~~~R~ 204 (628)
++|+|+ ++ +.+.+.++..+++--+|+...-..|.=-++++.++||.+..--.... .+-.=.++.-|- +-.|-
T Consensus 65 ~~diilkV~---~P~~~e~~~l~~g~~li~~l~p~~~~~l~~~l~~~~it~ia~e~vpr~sraq~~d~lssma~IAGy~A 141 (509)
T PRK09424 65 QSDIILKVN---APSDDEIALLREGATLVSFIWPAQNPELLEKLAARGVTVLAMDAVPRISRAQSLDALSSMANIAGYRA 141 (509)
T ss_pred cCCEEEEeC---CCCHHHHHhcCCCCEEEEEeCcccCHHHHHHHHHcCCEEEEeecccccccCCCcccccchhhhhHHHH
Confidence 578877 32 34455566665566777776666665567888999998875322110 000001111111 11222
Q ss_pred hhHHHHHHHcCccccccc-ceeeecCCeEEEEecChhHHHHHHHHHcCCCEEEEECCCC-ChhHHHHcCCccc--CH---
Q 006864 205 VSQADASIKAGKWLRSKY-VGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA-PADKARAVGVELV--SF--- 277 (628)
Q Consensus 205 i~~~~~~~~~g~W~~~~~-~g~~l~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~g~~~~--sl--- 277 (628)
+..+.+.. |+...... ......|.++.|+|.|.+|...++.++.+|.+|+++|.+. ..+.++++|.+.+ +.
T Consensus 142 v~~aa~~~--~~~~~g~~taaG~~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aeslGA~~v~i~~~e~ 219 (509)
T PRK09424 142 VIEAAHEF--GRFFTGQITAAGKVPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVESMGAEFLELDFEEE 219 (509)
T ss_pred HHHHHHHh--cccCCCceeccCCcCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEEeccccc
Confidence 22221111 11111000 0013468999999999999999999999999999999886 4466777887632 11
Q ss_pred -----------------------HHHhccCCEEEEcCCCCcc-ccccccHHHHhcCCCCcEEEEcC
Q 006864 278 -----------------------DQALATADFISLHMPLNPT-TSKIFNDETFAKMKKGVRIVNVA 319 (628)
Q Consensus 278 -----------------------~ell~~aDvV~l~~Plt~~-t~~li~~~~l~~mk~gailIN~a 319 (628)
.+.+..+|+|+.+.-.... .-.++.++.++.||+|.++++++
T Consensus 220 ~~~~~gya~~~s~~~~~~~~~~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg 285 (509)
T PRK09424 220 GGSGDGYAKVMSEEFIKAEMALFAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLA 285 (509)
T ss_pred cccccchhhhcchhHHHHHHHHHHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEc
Confidence 1112569999998864221 23455788999999999999997
|
|
| >PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold | Back alignment and domain information |
|---|
Probab=98.21 E-value=1.4e-06 Score=69.91 Aligned_cols=65 Identities=25% Similarity=0.325 Sum_probs=55.9
Q ss_pred cEEEEeccCCCCchhhHHhhhhcCCccccceEEeeeec-CccEEEEEEeCCCCCHHHHHHHhcccC
Q 006864 559 NLILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFR-RNHGIMAIGVDEEPNQDSLKEIGKVHF 623 (628)
Q Consensus 559 ~~Llv~~~D~PGvIa~V~~iL~~~~INIa~m~v~R~~~-gg~Al~~i~vD~~~~~~~l~~L~~l~~ 623 (628)
|.+.+..+|+||++++|+++|+++||||..+...+... ....++.+..|....+.++++|+++++
T Consensus 1 ~~v~v~~~drpG~l~~v~~~la~~~inI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 66 (66)
T PF01842_consen 1 YRVRVIVPDRPGILADVTEILADHGINIDSISQSSDKDGVGIVFIVIVVDEEDLEKLLEELEALPG 66 (66)
T ss_dssp EEEEEEEETSTTHHHHHHHHHHHTTEEEEEEEEEEESSTTEEEEEEEEEEGHGHHHHHHHHHHHTT
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcCCCHHHeEEEecCCCceEEEEEEECCCCCHHHHHHHHHcccC
Confidence 45677889999999999999999999999999988665 456677777888888899999998764
|
ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. The archetypical ACT domain is the C-terminal regulatory domain of 3-phosphoglycerate dehydrogenase (3PGDH), which folds with a ferredoxin-like topology. A pair of ACT domains form an eight-stranded antiparallel sheet with two molecules of allosteric inhibitor serine bound in the interface. Biochemical exploration of a few other proteins containing ACT domains supports the suggestions that these domains contain the archetypical ACT structure [].; GO: 0016597 amino acid binding, 0008152 metabolic process; PDB: 3L76_B 2F06_B 3NRB_C 1Y7P_C 2QMX_A 2DT9_A 2ZHO_D 3K5P_A 3TVI_K 3C1M_C .... |
| >PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated | Back alignment and domain information |
|---|
Probab=98.21 E-value=1.3e-05 Score=90.64 Aligned_cols=104 Identities=23% Similarity=0.263 Sum_probs=73.2
Q ss_pred CeEEEEecChhHHHHHHHHHcCCCEEEEECCCCChh-HHH-------------------HcC-Cccc-CHHHHhccCCEE
Q 006864 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPAD-KAR-------------------AVG-VELV-SFDQALATADFI 287 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~-~a~-------------------~~g-~~~~-sl~ell~~aDvV 287 (628)
++|||||.|.||..+|.++...|++|.+||+..... ... ..+ +..+ ++++++++||+|
T Consensus 5 ~kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~~~~~~~ea~~~aD~V 84 (495)
T PRK07531 5 MKAACIGGGVIGGGWAARFLLAGIDVAVFDPHPEAERIIGEVLANAERAYAMLTDAPLPPEGRLTFCASLAEAVAGADWI 84 (495)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHhhhccchhhhhhceEeeCCHHHHhcCCCEE
Confidence 589999999999999999999999999999875321 110 112 3333 788999999999
Q ss_pred EEcCCCCccccccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhC
Q 006864 288 SLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDS 335 (628)
Q Consensus 288 ~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~~vde~aL~~aL~~ 335 (628)
+.++|-..+.+..+-.+.-+.++++++| .++..++ ....+.+.+..
T Consensus 85 ieavpe~~~vk~~l~~~l~~~~~~~~iI-~SsTsgi-~~s~l~~~~~~ 130 (495)
T PRK07531 85 QESVPERLDLKRRVLAEIDAAARPDALI-GSSTSGF-LPSDLQEGMTH 130 (495)
T ss_pred EEcCcCCHHHHHHHHHHHHhhCCCCcEE-EEcCCCC-CHHHHHhhcCC
Confidence 9999977665654434444557888755 4444443 34466776654
|
|
| >PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.21 E-value=1.7e-05 Score=84.01 Aligned_cols=110 Identities=19% Similarity=0.278 Sum_probs=72.3
Q ss_pred CeEEEEecChhHHHHHHHHHcCCCEEEEECCCCCh-hHHHH-----cC--------------Ccc-cCHHHHhccCCEEE
Q 006864 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPA-DKARA-----VG--------------VEL-VSFDQALATADFIS 288 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~-----~g--------------~~~-~sl~ell~~aDvV~ 288 (628)
++|+|||.|.||..+|..|...|++|++||+.... +...+ .+ +.. .++++++++||+|+
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~aDlVi 84 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKGLQVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRMEAGLAAAVSGADLVI 84 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEEeCCHHHHhccCCEEE
Confidence 68999999999999999999999999999986522 11111 11 122 26778899999999
Q ss_pred EcCCCCccccccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhC-CCeeEE
Q 006864 289 LHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDS-GVVAQA 341 (628)
Q Consensus 289 l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~~vde~aL~~aL~~-g~i~ga 341 (628)
+++|-..+.+.-+-.+.-..++++++|+....| +....+.+.+.. .++.|+
T Consensus 85 ~av~~~~~~~~~v~~~l~~~~~~~~ii~s~tsg--~~~~~l~~~~~~~~~~ig~ 136 (311)
T PRK06130 85 EAVPEKLELKRDVFARLDGLCDPDTIFATNTSG--LPITAIAQAVTRPERFVGT 136 (311)
T ss_pred EeccCcHHHHHHHHHHHHHhCCCCcEEEECCCC--CCHHHHHhhcCCcccEEEE
Confidence 999965433322223332346777776544333 235577777653 355444
|
|
| >PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=98.18 E-value=4.4e-06 Score=87.94 Aligned_cols=81 Identities=17% Similarity=0.209 Sum_probs=66.5
Q ss_pred ceeeecCCeEEEEe-cChhHHHHHHHHHcCCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEcCCCCccccccc
Q 006864 223 VGVSLVGKTLAVMG-FGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIF 301 (628)
Q Consensus 223 ~g~~l~GktiGIIG-lG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~sl~ell~~aDvV~l~~Plt~~t~~li 301 (628)
.+.++.||+++||| .|.+|+.+|.+|...|+.|.+|+.... ++++++++||+|+++++-.. ++
T Consensus 152 ~~i~~~Gk~V~viGrs~~mG~PmA~~L~~~g~tVtv~~~rT~------------~l~e~~~~ADIVIsavg~~~----~v 215 (296)
T PRK14188 152 VHGDLSGLNAVVIGRSNLVGKPMAQLLLAANATVTIAHSRTR------------DLPAVCRRADILVAAVGRPE----MV 215 (296)
T ss_pred hCCCCCCCEEEEEcCCcchHHHHHHHHHhCCCEEEEECCCCC------------CHHHHHhcCCEEEEecCChh----hc
Confidence 35689999999999 999999999999999999999963321 47889999999999998543 44
Q ss_pred cHHHHhcCCCCcEEEEcCCCc
Q 006864 302 NDETFAKMKKGVRIVNVARGG 322 (628)
Q Consensus 302 ~~~~l~~mk~gailIN~aRg~ 322 (628)
.... +|+|+++||++--.
T Consensus 216 ~~~~---lk~GavVIDvGin~ 233 (296)
T PRK14188 216 KGDW---IKPGATVIDVGINR 233 (296)
T ss_pred chhe---ecCCCEEEEcCCcc
Confidence 4332 89999999998433
|
|
| >PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.17 E-value=8.6e-06 Score=86.93 Aligned_cols=101 Identities=28% Similarity=0.328 Sum_probs=74.7
Q ss_pred CCeEEEEecChhHHHHHHHHHcCCCEEEEECCCCCh-hHHHHc--------C------Ccc-cCHHHHhccCCEEEEcCC
Q 006864 229 GKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPA-DKARAV--------G------VEL-VSFDQALATADFISLHMP 292 (628)
Q Consensus 229 GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~~--------g------~~~-~sl~ell~~aDvV~l~~P 292 (628)
.++|+|||+|.||..+|.+|...|++|.+|+++... +..... | +.. .+++++++.||+|++++|
T Consensus 4 ~m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~~~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~aD~Vi~~v~ 83 (328)
T PRK14618 4 GMRVAVLGAGAWGTALAVLAASKGVPVRLWARRPEFAAALAAERENREYLPGVALPAELYPTADPEEALAGADFAVVAVP 83 (328)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhCcccccCCCCcCCCCeEEeCCHHHHHcCCCEEEEECc
Confidence 358999999999999999999999999999996422 222222 2 222 278888999999999999
Q ss_pred CCccccccccHHHHhcCCCCcEEEEcCCC-chhc--HHHHHHHHhC
Q 006864 293 LNPTTSKIFNDETFAKMKKGVRIVNVARG-GVID--EEALVRALDS 335 (628)
Q Consensus 293 lt~~t~~li~~~~l~~mk~gailIN~aRg-~~vd--e~aL~~aL~~ 335 (628)
... + ++.++.++++.++|+++.| ..-+ .+.+.+.+.+
T Consensus 84 ~~~-~-----~~v~~~l~~~~~vi~~~~Gi~~~~~~~~~l~~~l~~ 123 (328)
T PRK14618 84 SKA-L-----RETLAGLPRALGYVSCAKGLAPDGGRLSELARVLEF 123 (328)
T ss_pred hHH-H-----HHHHHhcCcCCEEEEEeeccccCCCccchHHHHHHH
Confidence 552 2 5666889999999999987 3222 4455566544
|
|
| >cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase | Back alignment and domain information |
|---|
Probab=98.13 E-value=9.8e-06 Score=78.66 Aligned_cols=90 Identities=18% Similarity=0.288 Sum_probs=73.5
Q ss_pred eeecCCeEEEEecChh-HHHHHHHHHcCCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEcCCCCccccccccH
Q 006864 225 VSLVGKTLAVMGFGKV-GSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFND 303 (628)
Q Consensus 225 ~~l~GktiGIIGlG~I-G~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~sl~ell~~aDvV~l~~Plt~~t~~li~~ 303 (628)
.++.||++.|||.|.+ |..+|+.|+..|.+|...+++. -++.+.+.+||+|+.+++-. +++..
T Consensus 40 ~~l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~------------~~l~~~l~~aDiVIsat~~~----~ii~~ 103 (168)
T cd01080 40 IDLAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKT------------KNLKEHTKQADIVIVAVGKP----GLVKG 103 (168)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCc------------hhHHHHHhhCCEEEEcCCCC----ceecH
Confidence 4689999999999996 8889999999999999988762 24678899999999999833 36777
Q ss_pred HHHhcCCCCcEEEEcCCCchhcHHHHHHHHhCCCeeE
Q 006864 304 ETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQ 340 (628)
Q Consensus 304 ~~l~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~g 340 (628)
+. ++++.++||+|...-+| ..+|++.|
T Consensus 104 ~~---~~~~~viIDla~prdvd-------~~~~~~~G 130 (168)
T cd01080 104 DM---VKPGAVVIDVGINRVPD-------KSGGKLVG 130 (168)
T ss_pred HH---ccCCeEEEEccCCCccc-------ccCCCeeC
Confidence 74 58899999999888777 44556643
|
NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a |
| >PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=98.12 E-value=7.1e-06 Score=85.70 Aligned_cols=79 Identities=20% Similarity=0.279 Sum_probs=66.4
Q ss_pred ceeeecCCeEEEEec-ChhHHHHHHHHHcCCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEcCCCCccccccc
Q 006864 223 VGVSLVGKTLAVMGF-GKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIF 301 (628)
Q Consensus 223 ~g~~l~GktiGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~sl~ell~~aDvV~l~~Plt~~t~~li 301 (628)
.+.++.||+++|||. |.+|+.+|.+|...|+.|..|.... .++.+.+++||+|+.+++.. +++
T Consensus 152 ~~i~l~Gk~v~vIG~S~ivG~Pla~lL~~~gatVtv~~s~t------------~~l~~~~~~ADIVI~avg~~----~~v 215 (284)
T PRK14179 152 YNVELEGKHAVVIGRSNIVGKPMAQLLLDKNATVTLTHSRT------------RNLAEVARKADILVVAIGRG----HFV 215 (284)
T ss_pred hCCCCCCCEEEEECCCCcCcHHHHHHHHHCCCEEEEECCCC------------CCHHHHHhhCCEEEEecCcc----ccC
Confidence 477899999999999 9999999999999999999985332 15888999999999999844 345
Q ss_pred cHHHHhcCCCCcEEEEcCC
Q 006864 302 NDETFAKMKKGVRIVNVAR 320 (628)
Q Consensus 302 ~~~~l~~mk~gailIN~aR 320 (628)
.... +|+|+++||++-
T Consensus 216 ~~~~---ik~GavVIDvgi 231 (284)
T PRK14179 216 TKEF---VKEGAVVIDVGM 231 (284)
T ss_pred CHHH---ccCCcEEEEecc
Confidence 5543 799999999983
|
|
| >PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.09 E-value=7.3e-06 Score=86.79 Aligned_cols=92 Identities=22% Similarity=0.254 Sum_probs=68.4
Q ss_pred CeEEEEecChhHHHHHHHHHcCCCEEEEECCCCC-hhHHHHc--------------CCcc-cCHHHHhccCCEEEEcCCC
Q 006864 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAP-ADKARAV--------------GVEL-VSFDQALATADFISLHMPL 293 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~--------------g~~~-~sl~ell~~aDvV~l~~Pl 293 (628)
++|+|||+|.||..+|.+|...|++|.+||+... .+..... ++.. .+++++++.||+|++++|.
T Consensus 2 mkI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~v~~ 81 (325)
T PRK00094 2 MKIAVLGAGSWGTALAIVLARNGHDVTLWARDPEQAAEINADRENPRYLPGIKLPDNLRATTDLAEALADADLILVAVPS 81 (325)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCcccccCCCCcCCCCeEEeCCHHHHHhCCCEEEEeCCH
Confidence 4799999999999999999999999999998642 2222222 2222 3678889999999999995
Q ss_pred CccccccccHHHHhcCCCCcEEEEcCCCch
Q 006864 294 NPTTSKIFNDETFAKMKKGVRIVNVARGGV 323 (628)
Q Consensus 294 t~~t~~li~~~~l~~mk~gailIN~aRg~~ 323 (628)
..+..++ .+....++++.++|++..|--
T Consensus 82 -~~~~~v~-~~l~~~~~~~~~vi~~~ngv~ 109 (325)
T PRK00094 82 -QALREVL-KQLKPLLPPDAPIVWATKGIE 109 (325)
T ss_pred -HHHHHHH-HHHHhhcCCCCEEEEEeeccc
Confidence 3455554 344556788999999976543
|
|
| >TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC | Back alignment and domain information |
|---|
Probab=98.08 E-value=4.2e-05 Score=86.44 Aligned_cols=117 Identities=23% Similarity=0.231 Sum_probs=81.7
Q ss_pred CeEEEEecChhHHHHHHHHHcCCCEEEEECCCCCh-hH-----------HHHcCC-------------cc-cCHHHHhcc
Q 006864 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPA-DK-----------ARAVGV-------------EL-VSFDQALAT 283 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~-----------a~~~g~-------------~~-~sl~ell~~ 283 (628)
++|||||.|.||..||..+...|++|.+||+.... ++ ..+.|. .. .++++ +++
T Consensus 6 ~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~-l~~ 84 (503)
T TIGR02279 6 VTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIPVTDLHA-LAD 84 (503)
T ss_pred cEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEEeCCHHH-hCC
Confidence 67999999999999999999999999999987422 11 112231 12 25655 579
Q ss_pred CCEEEEcCCCCccccccccHHHHhcCCCCcEEE-EcCCCchhcHHHHHHHHhCCCeeEEEeeccCCCCC
Q 006864 284 ADFISLHMPLNPTTSKIFNDETFAKMKKGVRIV-NVARGGVIDEEALVRALDSGVVAQAALDVFTEEPP 351 (628)
Q Consensus 284 aDvV~l~~Plt~~t~~li~~~~l~~mk~gailI-N~aRg~~vde~aL~~aL~~g~i~ga~lDV~~~EP~ 351 (628)
||+|+.++|-..+.+..+-.+.-..++++++|. |++.-.+ ..+.+.++.. ....++..|.+-|.
T Consensus 85 aDlVIEav~E~~~vK~~vf~~l~~~~~~~~IlasnTStl~i---~~iA~~~~~p-~r~~G~HFf~Papv 149 (503)
T TIGR02279 85 AGLVIEAIVENLEVKKALFAQLEELCPADTIIASNTSSLSI---TAIAAGLARP-ERVAGLHFFNPAPV 149 (503)
T ss_pred CCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCCCCH---HHHHHhcCcc-cceEEEeccCcccc
Confidence 999999999888877766555556688888876 6664443 4566666532 22366676765543
|
This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families. |
| >PRK06476 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=98.02 E-value=1.3e-05 Score=82.75 Aligned_cols=100 Identities=12% Similarity=0.244 Sum_probs=71.5
Q ss_pred eEEEEecChhHHHHHHHHHcCCC---EEEEECCCCCh-hHH-HHc-CCcc-cCHHHHhccCCEEEEcCCCCccccccccH
Q 006864 231 TLAVMGFGKVGSEVARRAKGLGM---NVIAHDPYAPA-DKA-RAV-GVEL-VSFDQALATADFISLHMPLNPTTSKIFND 303 (628)
Q Consensus 231 tiGIIGlG~IG~~vA~~l~~~G~---~V~~~d~~~~~-~~a-~~~-g~~~-~sl~ell~~aDvV~l~~Plt~~t~~li~~ 303 (628)
+|||||+|+||+.+++.|...|. .+.+||+.... +.. ... ++.. .+.++++++||+|++++| .+....++..
T Consensus 2 ~IgiIG~G~mG~aia~~L~~~g~~~~~i~v~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~aDvVilav~-p~~~~~vl~~ 80 (258)
T PRK06476 2 KIGFIGTGAITEAMVTGLLTSPADVSEIIVSPRNAQIAARLAERFPKVRIAKDNQAVVDRSDVVFLAVR-PQIAEEVLRA 80 (258)
T ss_pred eEEEECcCHHHHHHHHHHHhCCCChheEEEECCCHHHHHHHHHHcCCceEeCCHHHHHHhCCEEEEEeC-HHHHHHHHHH
Confidence 79999999999999999987774 35788876422 222 223 3544 378889999999999999 3334444432
Q ss_pred HHHhcCCCCcEEEEcCCCchhcHHHHHHHHhCC
Q 006864 304 ETFAKMKKGVRIVNVARGGVIDEEALVRALDSG 336 (628)
Q Consensus 304 ~~l~~mk~gailIN~aRg~~vde~aL~~aL~~g 336 (628)
+ .++++.++|.+. .-+..+.|.+.++.+
T Consensus 81 --l-~~~~~~~vis~~--ag~~~~~l~~~~~~~ 108 (258)
T PRK06476 81 --L-RFRPGQTVISVI--AATDRAALLEWIGHD 108 (258)
T ss_pred --h-ccCCCCEEEEEC--CCCCHHHHHHHhCCC
Confidence 3 357889999987 447777888877654
|
|
| >PRK11880 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=98.02 E-value=6.7e-05 Score=77.53 Aligned_cols=104 Identities=20% Similarity=0.293 Sum_probs=69.7
Q ss_pred CeEEEEecChhHHHHHHHHHcCC---CEEEEECCCCC-hhHHHH-cCCccc-CHHHHhccCCEEEEcCCCCccccccccH
Q 006864 230 KTLAVMGFGKVGSEVARRAKGLG---MNVIAHDPYAP-ADKARA-VGVELV-SFDQALATADFISLHMPLNPTTSKIFND 303 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~G---~~V~~~d~~~~-~~~a~~-~g~~~~-sl~ell~~aDvV~l~~Plt~~t~~li~~ 303 (628)
++|+|||+|.||+.+++.+...| .+|.+||++.. .+...+ .|+... +.++++.+||+|++++|-. ..+.++..
T Consensus 3 m~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~r~~~~~~~~~~~~g~~~~~~~~~~~~~advVil~v~~~-~~~~v~~~ 81 (267)
T PRK11880 3 KKIGFIGGGNMASAIIGGLLASGVPAKDIIVSDPSPEKRAALAEEYGVRAATDNQEAAQEADVVVLAVKPQ-VMEEVLSE 81 (267)
T ss_pred CEEEEEechHHHHHHHHHHHhCCCCcceEEEEcCCHHHHHHHHHhcCCeecCChHHHHhcCCEEEEEcCHH-HHHHHHHH
Confidence 57999999999999999998888 78999998752 222233 365443 6788899999999999832 23333322
Q ss_pred HHHhcCCCCcEEEEcCCCchhcHHHHHHHHhCC-Cee
Q 006864 304 ETFAKMKKGVRIVNVARGGVIDEEALVRALDSG-VVA 339 (628)
Q Consensus 304 ~~l~~mk~gailIN~aRg~~vde~aL~~aL~~g-~i~ 339 (628)
....+ +..||.+.-|- ..+.+.+.+..+ ++.
T Consensus 82 -l~~~~--~~~vvs~~~gi--~~~~l~~~~~~~~~iv 113 (267)
T PRK11880 82 -LKGQL--DKLVVSIAAGV--TLARLERLLGADLPVV 113 (267)
T ss_pred -HHhhc--CCEEEEecCCC--CHHHHHHhcCCCCcEE
Confidence 22223 45777776543 566677666533 443
|
|
| >PRK15057 UDP-glucose 6-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.00 E-value=3.3e-05 Score=84.60 Aligned_cols=129 Identities=14% Similarity=0.160 Sum_probs=84.4
Q ss_pred CeEEEEecChhHHHHHHHHHcCCCEEEEECCCCChhH-HHH----------------cCCcc-c--CHHHHhccCCEEEE
Q 006864 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADK-ARA----------------VGVEL-V--SFDQALATADFISL 289 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~-a~~----------------~g~~~-~--sl~ell~~aDvV~l 289 (628)
++|+|||+|.||..+|..+. .|++|++||+....-. ..+ .+... . +..++.++||+|++
T Consensus 1 mkI~VIGlGyvGl~~A~~lA-~G~~VigvD~d~~kv~~l~~g~~~~~e~~l~~~l~~~~~~l~~t~~~~~~~~~ad~vii 79 (388)
T PRK15057 1 MKITISGTGYVGLSNGLLIA-QNHEVVALDILPSRVAMLNDRISPIVDKEIQQFLQSDKIHFNATLDKNEAYRDADYVII 79 (388)
T ss_pred CEEEEECCCHHHHHHHHHHH-hCCcEEEEECCHHHHHHHHcCCCCCCCcCHHHHHHhCCCcEEEecchhhhhcCCCEEEE
Confidence 36999999999999997766 4999999998643211 111 11122 1 36678899999999
Q ss_pred cCCCCcccc-cccc------H-HHHhcCCCCcEEEEcCCCchhcHHHHHHHHhCCCeeEEEeeccCCCCCCCC---Cccc
Q 006864 290 HMPLNPTTS-KIFN------D-ETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEEPPAKD---SKLV 358 (628)
Q Consensus 290 ~~Plt~~t~-~li~------~-~~l~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~ga~lDV~~~EP~~~~---~~L~ 358 (628)
|+|...+-+ ..++ . +.+..+++|.++|+.+.-.+=-.+.+.+.+.+..+ +|.+|.+... +.++
T Consensus 80 ~Vpt~~~~k~~~~dl~~v~~v~~~i~~~~~g~lVV~~STv~pgtt~~l~~~~~~~~v------~~~PE~l~~G~a~~d~~ 153 (388)
T PRK15057 80 ATPTDYDPKTNYFNTSSVESVIKDVVEINPYAVMVIKSTVPVGFTAAMHKKYRTENI------IFSPEFLREGKALYDNL 153 (388)
T ss_pred eCCCCCccCCCCcChHHHHHHHHHHHhcCCCCEEEEeeecCCchHHHHHHHhhcCcE------EECcccccCCccccccc
Confidence 999552211 1121 1 22334799999999998887777788877765333 2466665433 2345
Q ss_pred cCCcEEE
Q 006864 359 QHENVTV 365 (628)
Q Consensus 359 ~~~nvil 365 (628)
..|.+++
T Consensus 154 ~p~rvv~ 160 (388)
T PRK15057 154 HPSRIVI 160 (388)
T ss_pred CCCEEEE
Confidence 5566654
|
|
| >PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.99 E-value=1.8e-05 Score=82.93 Aligned_cols=80 Identities=21% Similarity=0.295 Sum_probs=68.1
Q ss_pred ceeeecCCeEEEEecCh-hHHHHHHHHHcCCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEcCCCCccccccc
Q 006864 223 VGVSLVGKTLAVMGFGK-VGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIF 301 (628)
Q Consensus 223 ~g~~l~GktiGIIGlG~-IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~sl~ell~~aDvV~l~~Plt~~t~~li 301 (628)
.+.++.||++.|||.|. +|+.+|..|...|+.|..++++. .++.+.+++||+|+.+++. .+++
T Consensus 152 ~~i~l~Gk~vvVIGrs~~VG~pla~lL~~~gatVtv~~s~t------------~~l~~~~~~ADIVIsAvg~----p~~i 215 (286)
T PRK14175 152 ADIDLEGKNAVVIGRSHIVGQPVSKLLLQKNASVTILHSRS------------KDMASYLKDADVIVSAVGK----PGLV 215 (286)
T ss_pred cCCCCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCc------------hhHHHHHhhCCEEEECCCC----Cccc
Confidence 46689999999999999 99999999999999999987642 2578899999999999984 3467
Q ss_pred cHHHHhcCCCCcEEEEcCCC
Q 006864 302 NDETFAKMKKGVRIVNVARG 321 (628)
Q Consensus 302 ~~~~l~~mk~gailIN~aRg 321 (628)
..+. +|+|+++||+|-.
T Consensus 216 ~~~~---vk~gavVIDvGi~ 232 (286)
T PRK14175 216 TKDV---VKEGAVIIDVGNT 232 (286)
T ss_pred CHHH---cCCCcEEEEcCCC
Confidence 7753 6999999999854
|
|
| >PRK07680 late competence protein ComER; Validated | Back alignment and domain information |
|---|
Probab=97.97 E-value=2.8e-05 Score=80.96 Aligned_cols=100 Identities=11% Similarity=0.227 Sum_probs=72.0
Q ss_pred eEEEEecChhHHHHHHHHHcCC----CEEEEECCCCCh-hHH-HHc-CCccc-CHHHHhccCCEEEEcCCCCcccccccc
Q 006864 231 TLAVMGFGKVGSEVARRAKGLG----MNVIAHDPYAPA-DKA-RAV-GVELV-SFDQALATADFISLHMPLNPTTSKIFN 302 (628)
Q Consensus 231 tiGIIGlG~IG~~vA~~l~~~G----~~V~~~d~~~~~-~~a-~~~-g~~~~-sl~ell~~aDvV~l~~Plt~~t~~li~ 302 (628)
+|||||+|.||+.+++.|...| .+|.+||++... +.. ... ++... +..+++.+||+|++++| .......+
T Consensus 2 ~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~aDiVilav~-p~~~~~vl- 79 (273)
T PRK07680 2 NIGFIGTGNMGTILIEAFLESGAVKPSQLTITNRTPAKAYHIKERYPGIHVAKTIEEVISQSDLIFICVK-PLDIYPLL- 79 (273)
T ss_pred EEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCHHHHHHHHHHcCCeEEECCHHHHHHhCCEEEEecC-HHHHHHHH-
Confidence 6999999999999999998777 379999987522 222 222 55443 78888999999999998 33344444
Q ss_pred HHHHhcCCCCcEEEEcCCCchhcHHHHHHHHh
Q 006864 303 DETFAKMKKGVRIVNVARGGVIDEEALVRALD 334 (628)
Q Consensus 303 ~~~l~~mk~gailIN~aRg~~vde~aL~~aL~ 334 (628)
++....++++.++|+++-| +..+.|.+.+.
T Consensus 80 ~~l~~~l~~~~~iis~~ag--~~~~~L~~~~~ 109 (273)
T PRK07680 80 QKLAPHLTDEHCLVSITSP--ISVEQLETLVP 109 (273)
T ss_pred HHHHhhcCCCCEEEEECCC--CCHHHHHHHcC
Confidence 3344467788999999844 36777776665
|
|
| >PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins | Back alignment and domain information |
|---|
Probab=97.97 E-value=1.1e-05 Score=74.87 Aligned_cols=106 Identities=21% Similarity=0.435 Sum_probs=60.5
Q ss_pred CCeEEEEecChhHHHHHHHHHcCCCEEEEE-CCCC-ChhHHHH-cC-CcccCHHHHhccCCEEEEcCCCCccccccccHH
Q 006864 229 GKTLAVMGFGKVGSEVARRAKGLGMNVIAH-DPYA-PADKARA-VG-VELVSFDQALATADFISLHMPLNPTTSKIFNDE 304 (628)
Q Consensus 229 GktiGIIGlG~IG~~vA~~l~~~G~~V~~~-d~~~-~~~~a~~-~g-~~~~sl~ell~~aDvV~l~~Plt~~t~~li~~~ 304 (628)
..+|||||.|++|..+++.|+..|+.|.++ ++.. ..+++.. .+ ....++++++++||++++++|-. .... +-++
T Consensus 10 ~l~I~iIGaGrVG~~La~aL~~ag~~v~~v~srs~~sa~~a~~~~~~~~~~~~~~~~~~aDlv~iavpDd-aI~~-va~~ 87 (127)
T PF10727_consen 10 RLKIGIIGAGRVGTALARALARAGHEVVGVYSRSPASAERAAAFIGAGAILDLEEILRDADLVFIAVPDD-AIAE-VAEQ 87 (127)
T ss_dssp --EEEEECTSCCCCHHHHHHHHTTSEEEEESSCHH-HHHHHHC--TT-----TTGGGCC-SEEEE-S-CC-HHHH-HHHH
T ss_pred ccEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCcccccccccccccccccccccccccCCEEEEEechH-HHHH-HHHH
Confidence 468999999999999999999999999876 4443 2222221 22 23457889999999999999943 2222 2233
Q ss_pred HHhc--CCCCcEEEEcCCCchhcHHHHHHHHhCCCe
Q 006864 305 TFAK--MKKGVRIVNVARGGVIDEEALVRALDSGVV 338 (628)
Q Consensus 305 ~l~~--mk~gailIN~aRg~~vde~aL~~aL~~g~i 338 (628)
.-.. .++|.+++-|+ +-...+.|..+-+.|-+
T Consensus 88 La~~~~~~~g~iVvHtS--Ga~~~~vL~p~~~~Ga~ 121 (127)
T PF10727_consen 88 LAQYGAWRPGQIVVHTS--GALGSDVLAPARERGAI 121 (127)
T ss_dssp HHCC--S-TT-EEEES---SS--GGGGHHHHHTT-E
T ss_pred HHHhccCCCCcEEEECC--CCChHHhhhhHHHCCCe
Confidence 3322 68999999996 23344444444455543
|
This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A. |
| >cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS) | Back alignment and domain information |
|---|
Probab=97.96 E-value=1.4e-05 Score=64.62 Aligned_cols=69 Identities=16% Similarity=0.329 Sum_probs=57.9
Q ss_pred cEEEEeccCCCCchhhHHhhhhcCCccccceEEeeeecCccEEEEEEeCCC--CCHHHHHHHhcccCcccc
Q 006864 559 NLILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDEE--PNQDSLKEIGKVHFVARI 627 (628)
Q Consensus 559 ~~Llv~~~D~PGvIa~V~~iL~~~~INIa~m~v~R~~~gg~Al~~i~vD~~--~~~~~l~~L~~l~~v~~v 627 (628)
|+|.+...|+||+++.++.+|+++++||..+...+...++.+.+.+.++.. .-++++++|+++++|.+|
T Consensus 1 ~~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~v~~v 71 (72)
T cd04878 1 HTLSVLVENEPGVLNRISGLFARRGFNIESLTVGPTEDPGISRITIVVEGDDDVIEQIVKQLNKLVDVLKV 71 (72)
T ss_pred CEEEEEEcCCCcHHHHHHHHHHhCCCCEEEEEeeecCCCCeEEEEEEEECCHHHHHHHHHHHhCCccEEEe
Confidence 578889999999999999999999999999998754356778888888753 234788999999998876
|
ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of |
| >COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.96 E-value=5.2e-05 Score=76.41 Aligned_cols=115 Identities=20% Similarity=0.317 Sum_probs=90.8
Q ss_pred CeEEEEecChhHHHHHHHHHcCCCEEEEECCCC-ChhHHHHcCCccc-CHHHH---hccCCEEEEcCCCCccccccccHH
Q 006864 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA-PADKARAVGVELV-SFDQA---LATADFISLHMPLNPTTSKIFNDE 304 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~g~~~~-sl~el---l~~aDvV~l~~Plt~~t~~li~~~ 304 (628)
++||.||||+||..+++||..-|.+|++||... ..+.+...|++.+ +|+++ |..-.+|-+.+|-.+-|...+ ++
T Consensus 1 M~iGmiGLGrMG~n~v~rl~~~ghdvV~yD~n~~av~~~~~~ga~~a~sl~el~~~L~~pr~vWlMvPag~it~~vi-~~ 79 (300)
T COG1023 1 MQIGMIGLGRMGANLVRRLLDGGHDVVGYDVNQTAVEELKDEGATGAASLDELVAKLSAPRIVWLMVPAGDITDAVI-DD 79 (300)
T ss_pred CcceeeccchhhHHHHHHHHhCCCeEEEEcCCHHHHHHHHhcCCccccCHHHHHHhcCCCcEEEEEccCCCchHHHH-HH
Confidence 479999999999999999999999999999886 3345566666543 66665 456789999999776565555 45
Q ss_pred HHhcCCCCcEEEEcCCCchhcHHHHHHHHhCCCeeEEEeeccC
Q 006864 305 TFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFT 347 (628)
Q Consensus 305 ~l~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~ga~lDV~~ 347 (628)
.-..|.+|-++|+-+...--|.-..++.|++..| ..+||=.
T Consensus 80 la~~L~~GDivIDGGNS~y~Ds~rr~~~l~~kgi--~flD~GT 120 (300)
T COG1023 80 LAPLLSAGDIVIDGGNSNYKDSLRRAKLLAEKGI--HFLDVGT 120 (300)
T ss_pred HHhhcCCCCEEEECCccchHHHHHHHHHHHhcCC--eEEeccC
Confidence 5566899999999888877788778888988888 5678644
|
|
| >TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein | Back alignment and domain information |
|---|
Probab=97.96 E-value=5.3e-05 Score=79.94 Aligned_cols=106 Identities=19% Similarity=0.255 Sum_probs=79.0
Q ss_pred HHHHHHHHHcCCCEEEEECCCCCh------hHHHHcCCccc-CHHHHhccCCEEEEcCCCCccccccccHHHHhcCCCCc
Q 006864 241 GSEVARRAKGLGMNVIAHDPYAPA------DKARAVGVELV-SFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGV 313 (628)
Q Consensus 241 G~~vA~~l~~~G~~V~~~d~~~~~------~~a~~~g~~~~-sl~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~ga 313 (628)
|+.+|++|...|++|++||++... +...+.|+..+ +..+++++||+|++++|..+.++.++ ...++.+++|+
T Consensus 32 GspMArnLlkAGheV~V~Drnrsa~e~e~~e~LaeaGA~~AaS~aEAAa~ADVVIL~LPd~aaV~eVl-~GLaa~L~~Ga 110 (341)
T TIGR01724 32 GSRMAIEFAMAGHDVVLAEPNREFMSDDLWKKVEDAGVKVVSDDKEAAKHGEIHVLFTPFGKGTFSIA-RTIIEHVPENA 110 (341)
T ss_pred HHHHHHHHHHCCCEEEEEeCChhhhhhhhhHHHHHCCCeecCCHHHHHhCCCEEEEecCCHHHHHHHH-HHHHhcCCCCC
Confidence 889999999999999999976431 23556687665 68999999999999999877787777 56888999999
Q ss_pred EEEEcCCCchhcHHHHHHHHhCC-CeeEEEeeccCCCC
Q 006864 314 RIVNVARGGVIDEEALVRALDSG-VVAQAALDVFTEEP 350 (628)
Q Consensus 314 ilIN~aRg~~vde~aL~~aL~~g-~i~ga~lDV~~~EP 350 (628)
++||++. ++.+.+++.|+.. +...--+-|..-.|
T Consensus 111 IVID~ST---IsP~t~~~~~e~~l~~~r~d~~v~s~HP 145 (341)
T TIGR01724 111 VICNTCT---VSPVVLYYSLEKILRLKRTDVGISSMHP 145 (341)
T ss_pred EEEECCC---CCHHHHHHHHHHHhhcCccccCeeccCC
Confidence 9999975 5556666666551 11112233455565
|
This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown. |
| >PRK08229 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.94 E-value=3.7e-05 Score=82.29 Aligned_cols=107 Identities=25% Similarity=0.334 Sum_probs=75.7
Q ss_pred CeEEEEecChhHHHHHHHHHcCCCEEEEECCCCChhHHHHcCCcc-----------------c-CHHHHhccCCEEEEcC
Q 006864 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVEL-----------------V-SFDQALATADFISLHM 291 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~-----------------~-sl~ell~~aDvV~l~~ 291 (628)
++|+|||.|.||..+|.+|...|.+|.+||+....+...+.|... . +. +.++.+|+|++++
T Consensus 3 mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~D~vil~v 81 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLAAAGADVTLIGRARIGDELRAHGLTLTDYRGRDVRVPPSAIAFSTDP-AALATADLVLVTV 81 (341)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCcEEEEecHHHHHHHHhcCceeecCCCcceecccceeEeccCh-hhccCCCEEEEEe
Confidence 579999999999999999999999999999853223333334321 1 33 5678999999999
Q ss_pred CCCccccccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhCCCeeE
Q 006864 292 PLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQ 340 (628)
Q Consensus 292 Plt~~t~~li~~~~l~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~g 340 (628)
|.. +....+ +.....++++.+++.+.- ++-..+.+.+.+...++..
T Consensus 82 k~~-~~~~~~-~~l~~~~~~~~iii~~~n-G~~~~~~l~~~~~~~~~~~ 127 (341)
T PRK08229 82 KSA-ATADAA-AALAGHARPGAVVVSFQN-GVRNADVLRAALPGATVLA 127 (341)
T ss_pred cCc-chHHHH-HHHHhhCCCCCEEEEeCC-CCCcHHHHHHhCCCCcEEE
Confidence 854 344443 345556788999998864 4555667777776655543
|
|
| >COG2085 Predicted dinucleotide-binding enzymes [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.93 E-value=2.7e-05 Score=77.50 Aligned_cols=88 Identities=26% Similarity=0.372 Sum_probs=65.4
Q ss_pred CeEEEEecChhHHHHHHHHHcCCCEEEEECCCCChhH---HHHcC--CcccCHHHHhccCCEEEEcCCCCccccccccHH
Q 006864 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADK---ARAVG--VELVSFDQALATADFISLHMPLNPTTSKIFNDE 304 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~---a~~~g--~~~~sl~ell~~aDvV~l~~Plt~~t~~li~~~ 304 (628)
++++|+|.|+||..+|++|...|++|++-.+..+... ++.++ ++..+.++..+.||+|++++|...- .. +.++
T Consensus 2 ~~~~i~GtGniG~alA~~~a~ag~eV~igs~r~~~~~~a~a~~l~~~i~~~~~~dA~~~aDVVvLAVP~~a~-~~-v~~~ 79 (211)
T COG2085 2 MIIAIIGTGNIGSALALRLAKAGHEVIIGSSRGPKALAAAAAALGPLITGGSNEDAAALADVVVLAVPFEAI-PD-VLAE 79 (211)
T ss_pred cEEEEeccChHHHHHHHHHHhCCCeEEEecCCChhHHHHHHHhhccccccCChHHHHhcCCEEEEeccHHHH-Hh-HHHH
Confidence 6899999999999999999999999998866543321 22233 3345889999999999999996542 11 2345
Q ss_pred HHhcCCCCcEEEEcCC
Q 006864 305 TFAKMKKGVRIVNVAR 320 (628)
Q Consensus 305 ~l~~mk~gailIN~aR 320 (628)
..+.+. |.++|++.-
T Consensus 80 l~~~~~-~KIvID~tn 94 (211)
T COG2085 80 LRDALG-GKIVIDATN 94 (211)
T ss_pred HHHHhC-CeEEEecCC
Confidence 555555 889999865
|
|
| >PRK06928 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=97.93 E-value=4.7e-05 Score=79.63 Aligned_cols=105 Identities=13% Similarity=0.221 Sum_probs=72.6
Q ss_pred CeEEEEecChhHHHHHHHHHcCC----CEEEEECCCCCh--hHH-HHc-CCcc-cCHHHHhccCCEEEEcCCCCcccccc
Q 006864 230 KTLAVMGFGKVGSEVARRAKGLG----MNVIAHDPYAPA--DKA-RAV-GVEL-VSFDQALATADFISLHMPLNPTTSKI 300 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~G----~~V~~~d~~~~~--~~a-~~~-g~~~-~sl~ell~~aDvV~l~~Plt~~t~~l 300 (628)
.+|+|||+|.||+.+++.|...| .+|++|+++... ... ... ++.. .+..++++++|+|++++|- ......
T Consensus 2 ~~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r~~~~~~~~l~~~~~~~~~~~~~~e~~~~aDvVilavpp-~~~~~v 80 (277)
T PRK06928 2 EKIGFIGYGSMADMIATKLLETEVATPEEIILYSSSKNEHFNQLYDKYPTVELADNEAEIFTKCDHSFICVPP-LAVLPL 80 (277)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCcccEEEEeCCcHHHHHHHHHHcCCeEEeCCHHHHHhhCCEEEEecCH-HHHHHH
Confidence 47999999999999999998777 689999876422 111 122 2332 4778889999999999992 223333
Q ss_pred ccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhCCCe
Q 006864 301 FNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVV 338 (628)
Q Consensus 301 i~~~~l~~mk~gailIN~aRg~~vde~aL~~aL~~g~i 338 (628)
+ .+....++++..||.+.-| +..+.|.+.+...++
T Consensus 81 l-~~l~~~l~~~~~ivS~~aG--i~~~~l~~~~~~~~v 115 (277)
T PRK06928 81 L-KDCAPVLTPDRHVVSIAAG--VSLDDLLEITPGLQV 115 (277)
T ss_pred H-HHHHhhcCCCCEEEEECCC--CCHHHHHHHcCCCCE
Confidence 3 2333446788899998766 666677777643344
|
|
| >TIGR01915 npdG NADPH-dependent F420 reductase | Back alignment and domain information |
|---|
Probab=97.92 E-value=5.2e-05 Score=76.44 Aligned_cols=91 Identities=20% Similarity=0.219 Sum_probs=61.9
Q ss_pred CeEEEEe-cChhHHHHHHHHHcCCCEEEEECCCCChh-H-HHH-------cCC----cccCHHHHhccCCEEEEcCCCCc
Q 006864 230 KTLAVMG-FGKVGSEVARRAKGLGMNVIAHDPYAPAD-K-ARA-------VGV----ELVSFDQALATADFISLHMPLNP 295 (628)
Q Consensus 230 ktiGIIG-lG~IG~~vA~~l~~~G~~V~~~d~~~~~~-~-a~~-------~g~----~~~sl~ell~~aDvV~l~~Plt~ 295 (628)
++|+||| .|.||+.+|++|...|.+|.++++..... . ... .|+ ...+..+.++++|+|++++|...
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~ea~~~aDvVilavp~~~ 80 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDLEKAEEAAAKALEELGHGGSDIKVTGADNAEAAKRADVVILAVPWDH 80 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCHHHHHHHHHHHHhhccccCCCceEEEeChHHHHhcCCEEEEECCHHH
Confidence 4799997 99999999999999999999998864221 1 111 121 12367788999999999999442
Q ss_pred cccccccHHHHhcCCCCcEEEEcCCCch
Q 006864 296 TTSKIFNDETFAKMKKGVRIVNVARGGV 323 (628)
Q Consensus 296 ~t~~li~~~~l~~mk~gailIN~aRg~~ 323 (628)
...++ ++.-..++ +.++|++.-|--
T Consensus 81 -~~~~l-~~l~~~l~-~~vvI~~~ngi~ 105 (219)
T TIGR01915 81 -VLKTL-ESLRDELS-GKLVISPVVPLA 105 (219)
T ss_pred -HHHHH-HHHHHhcc-CCEEEEeccCce
Confidence 33333 22212243 589999976643
|
This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase. |
| >KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.90 E-value=5.3e-05 Score=79.60 Aligned_cols=137 Identities=18% Similarity=0.266 Sum_probs=99.5
Q ss_pred CeEEEEecChhHHHHHHHHHcCCCEEEEECCCCChhHHHHcCCcc-cCHHHHhc-cCCEEEEcCCCCccccccccHHHHh
Q 006864 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVEL-VSFDQALA-TADFISLHMPLNPTTSKIFNDETFA 307 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~-~sl~ell~-~aDvV~l~~Plt~~t~~li~~~~l~ 307 (628)
+.|||||+|++|+-+|+.+-..|+.|+.+||..-.+.++.+|... ..+.++++ +.|+|.+|+... .+..++----++
T Consensus 53 l~IaIIGfGnmGqflAetli~aGh~li~hsRsdyssaa~~yg~~~ft~lhdlcerhpDvvLlctsil-siekilatypfq 131 (480)
T KOG2380|consen 53 LVIAIIGFGNMGQFLAETLIDAGHGLICHSRSDYSSAAEKYGSAKFTLLHDLCERHPDVVLLCTSIL-SIEKILATYPFQ 131 (480)
T ss_pred eEEEEEecCcHHHHHHHHHHhcCceeEecCcchhHHHHHHhcccccccHHHHHhcCCCEEEEEehhh-hHHHHHHhcCch
Confidence 689999999999999999999999999999987566677778654 46777776 699999998632 233444334466
Q ss_pred cCCCCcEEEEcCCCchhcHHHHHHHHhCC-CeeEEEeeccCCCCCCCCCccccCCcEEEcCCCC
Q 006864 308 KMKKGVRIVNVARGGVIDEEALVRALDSG-VVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLG 370 (628)
Q Consensus 308 ~mk~gailIN~aRg~~vde~aL~~aL~~g-~i~ga~lDV~~~EP~~~~~~L~~~~nvilTPHig 370 (628)
++|.|++++++-+-+...-+++.+.|.+. .|. ..=-.|+++ ..++.+-.+|-|+.--.+|
T Consensus 132 rlrrgtlfvdvlSvKefek~lfekYLPkdfDIl-ctHpmfGPk--svnh~wqglpfVydkvRig 192 (480)
T KOG2380|consen 132 RLRRGTLFVDVLSVKEFEKELFEKYLPKDFDIL-CTHPMFGPK--SVNHEWQGLPFVYDKVRIG 192 (480)
T ss_pred hhccceeEeeeeecchhHHHHHHHhCccccceE-eecCCcCCC--cCCCccccCceEEEEeecc
Confidence 78999999999999999999999988664 331 111123322 2345555677666655555
|
|
| >cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins | Back alignment and domain information |
|---|
Probab=97.89 E-value=5.7e-05 Score=64.88 Aligned_cols=67 Identities=31% Similarity=0.482 Sum_probs=57.0
Q ss_pred eeecCCeEEEEecChhHHHHHHHHHcC-CCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEcCCCCccccccccH
Q 006864 225 VSLVGKTLAVMGFGKVGSEVARRAKGL-GMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFND 303 (628)
Q Consensus 225 ~~l~GktiGIIGlG~IG~~vA~~l~~~-G~~V~~~d~~~~~~~a~~~g~~~~sl~ell~~aDvV~l~~Plt~~t~~li~~ 303 (628)
..+.+++++|+|.|.+|+.+++.+... +.+|.+||+ |+++.+.+. .+.+.+
T Consensus 19 ~~~~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r------------------------di~i~~~~~----~~~~~~ 70 (86)
T cd05191 19 KSLKGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR------------------------DILVTATPA----GVPVLE 70 (86)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC------------------------CEEEEcCCC----CCCchH
Confidence 457889999999999999999999988 678999987 999999874 345556
Q ss_pred HHHhcCCCCcEEEEcC
Q 006864 304 ETFAKMKKGVRIVNVA 319 (628)
Q Consensus 304 ~~l~~mk~gailIN~a 319 (628)
+....+++++++++++
T Consensus 71 ~~~~~~~~~~~v~~~a 86 (86)
T cd05191 71 EATAKINEGAVVIDLA 86 (86)
T ss_pred HHHHhcCCCCEEEecC
Confidence 5688899999999975
|
Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al |
| >COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=97.89 E-value=2.6e-05 Score=81.08 Aligned_cols=88 Identities=25% Similarity=0.437 Sum_probs=69.4
Q ss_pred eecCCeEEEEecChhHHHHHHHHHcCCCEEEEECCC-C-ChhHHHHcCCcccCHHHHhccCCEEEEcCCCCccccccccH
Q 006864 226 SLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPY-A-PADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFND 303 (628)
Q Consensus 226 ~l~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~-~-~~~~a~~~g~~~~sl~ell~~aDvV~l~~Plt~~t~~li~~ 303 (628)
-|.||||+|||||.-|.+=|..|+.-|.+|++--+. . +-+.+.+.|++..+.+|+.++||+|.+.+|-..+ ..++.+
T Consensus 15 ~LkgK~iaIIGYGsQG~ahalNLRDSGlnViiGlr~g~~s~~kA~~dGf~V~~v~ea~k~ADvim~L~PDe~q-~~vy~~ 93 (338)
T COG0059 15 LLKGKKVAIIGYGSQGHAQALNLRDSGLNVIIGLRKGSSSWKKAKEDGFKVYTVEEAAKRADVVMILLPDEQQ-KEVYEK 93 (338)
T ss_pred HhcCCeEEEEecChHHHHHHhhhhhcCCcEEEEecCCchhHHHHHhcCCEeecHHHHhhcCCEEEEeCchhhH-HHHHHH
Confidence 589999999999999999999999999998764332 2 4577888999999999999999999999994332 334444
Q ss_pred HHHhcCCCCcE
Q 006864 304 ETFAKMKKGVR 314 (628)
Q Consensus 304 ~~l~~mk~gai 314 (628)
+.-..||+|+.
T Consensus 94 ~I~p~Lk~G~a 104 (338)
T COG0059 94 EIAPNLKEGAA 104 (338)
T ss_pred HhhhhhcCCce
Confidence 55555666653
|
|
| >PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases | Back alignment and domain information |
|---|
Probab=97.85 E-value=1.3e-05 Score=74.77 Aligned_cols=94 Identities=23% Similarity=0.328 Sum_probs=68.9
Q ss_pred eecCCeEEEEecChhHHHHHHHHHcCCCE-EEEECCCCCh--hHHHHc---CCcc---cCHHHHhccCCEEEEcCCCCcc
Q 006864 226 SLVGKTLAVMGFGKVGSEVARRAKGLGMN-VIAHDPYAPA--DKARAV---GVEL---VSFDQALATADFISLHMPLNPT 296 (628)
Q Consensus 226 ~l~GktiGIIGlG~IG~~vA~~l~~~G~~-V~~~d~~~~~--~~a~~~---g~~~---~sl~ell~~aDvV~l~~Plt~~ 296 (628)
+++|+++.|||.|.+|+.++..|...|++ |..++|.... ..+... .+.. .++.+.+.++|+|+.++|...
T Consensus 9 ~l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~~~~~~~~~~~~~~~~~~~~~DivI~aT~~~~- 87 (135)
T PF01488_consen 9 DLKGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEEFGGVNIEAIPLEDLEEALQEADIVINATPSGM- 87 (135)
T ss_dssp TGTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHHTGCSEEEEEGGGHCHHHHTESEEEE-SSTTS-
T ss_pred CcCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHcCccccceeeHHHHHHHHhhCCeEEEecCCCC-
Confidence 68999999999999999999999999986 9999987422 222333 2222 356677899999999998653
Q ss_pred ccccccHHHHhcCCCCc-EEEEcCCCc
Q 006864 297 TSKIFNDETFAKMKKGV-RIVNVARGG 322 (628)
Q Consensus 297 t~~li~~~~l~~mk~ga-ilIN~aRg~ 322 (628)
..+.++.+...++.. +++|.+...
T Consensus 88 --~~i~~~~~~~~~~~~~~v~Dla~Pr 112 (135)
T PF01488_consen 88 --PIITEEMLKKASKKLRLVIDLAVPR 112 (135)
T ss_dssp --TSSTHHHHTTTCHHCSEEEES-SS-
T ss_pred --cccCHHHHHHHHhhhhceeccccCC
Confidence 377888887665543 888887543
|
Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C .... |
| >PRK05472 redox-sensing transcriptional repressor Rex; Provisional | Back alignment and domain information |
|---|
Probab=97.78 E-value=1.9e-05 Score=79.40 Aligned_cols=127 Identities=11% Similarity=0.177 Sum_probs=85.8
Q ss_pred HHHHHHHHHHHHHchhHHHHHHHcCcccccccceeeecCCeEEEEecChhHHHHHHHH--HcCCCEEEE-ECCCCChhHH
Q 006864 191 AEHGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRA--KGLGMNVIA-HDPYAPADKA 267 (628)
Q Consensus 191 AE~~l~l~L~~~R~i~~~~~~~~~g~W~~~~~~g~~l~GktiGIIGlG~IG~~vA~~l--~~~G~~V~~-~d~~~~~~~a 267 (628)
++|.+..++...|++. .|. ..++++|||+|.+|+.+++.+ ...|+++++ +|+.......
T Consensus 64 ~gy~v~~l~~~~~~~l---------~~~---------~~~rV~IIGaG~iG~~l~~~~~~~~~g~~ivgv~D~d~~~~~~ 125 (213)
T PRK05472 64 VGYNVEELLEFIEKIL---------GLD---------RTWNVALVGAGNLGRALLNYNGFEKRGFKIVAAFDVDPEKIGT 125 (213)
T ss_pred CCeeHHHHHHHHHHHh---------CCC---------CCcEEEEECCCHHHHHHHHhhhcccCCcEEEEEEECChhhcCC
Confidence 3578888888888765 222 235899999999999999863 467899887 4654211110
Q ss_pred HHcCCc---ccCHHHHhcc--CCEEEEcCCCCcc---ccccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhC
Q 006864 268 RAVGVE---LVSFDQALAT--ADFISLHMPLNPT---TSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDS 335 (628)
Q Consensus 268 ~~~g~~---~~sl~ell~~--aDvV~l~~Plt~~---t~~li~~~~l~~mk~gailIN~aRg~~vde~aL~~aL~~ 335 (628)
...|+. ..++++++++ .|.+++++|.... ...+.......-|....+.+|+.+|-+|+.++|..+|..
T Consensus 126 ~i~g~~v~~~~~l~~li~~~~iD~ViIa~P~~~~~~i~~~l~~~Gi~~il~~~p~~~~v~~~~~v~~~~l~~~l~~ 201 (213)
T PRK05472 126 KIGGIPVYHIDELEEVVKENDIEIGILTVPAEAAQEVADRLVEAGIKGILNFAPVRLSVPEDVIVRNVDLTVELQT 201 (213)
T ss_pred EeCCeEEcCHHHHHHHHHHCCCCEEEEeCCchhHHHHHHHHHHcCCCEEeecCceeecCCCCCEEEEechHHHHHH
Confidence 011221 2357788765 9999999997654 122222233334666778999999999999999998864
|
|
| >cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate | Back alignment and domain information |
|---|
Probab=97.77 E-value=5.2e-05 Score=59.47 Aligned_cols=45 Identities=24% Similarity=0.443 Sum_probs=41.8
Q ss_pred EeccCCCCchhhHHhhhhcCCccccceEEeeeecCccEEEEEEeCC
Q 006864 563 CRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDE 608 (628)
Q Consensus 563 v~~~D~PGvIa~V~~iL~~~~INIa~m~v~R~~~gg~Al~~i~vD~ 608 (628)
+...|+||.++++++.|+++++||.+|.+++.. ++.+++.+.+|.
T Consensus 3 v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~-~~~~~~~~~v~~ 47 (56)
T cd04889 3 VFVENKPGRLAEVTEILAEAGINIKAISIAETR-GEFGILRLIFSD 47 (56)
T ss_pred EEeCCCCChHHHHHHHHHHcCCCEeeEEEEEcc-CCcEEEEEEECC
Confidence 567899999999999999999999999998875 799999999987
|
Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A |
| >PRK13304 L-aspartate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.76 E-value=8.9e-05 Score=77.12 Aligned_cols=103 Identities=14% Similarity=0.234 Sum_probs=67.5
Q ss_pred CeEEEEecChhHHHHHHHHHcC--CCEEE-EECCCCCh--hHHHHcCCc-ccCHHHHhccCCEEEEcCCCCccccccccH
Q 006864 230 KTLAVMGFGKVGSEVARRAKGL--GMNVI-AHDPYAPA--DKARAVGVE-LVSFDQALATADFISLHMPLNPTTSKIFND 303 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~--G~~V~-~~d~~~~~--~~a~~~g~~-~~sl~ell~~aDvV~l~~Plt~~t~~li~~ 303 (628)
.++||||+|.||+.+++.+... ++++. ++|+.... ..+...+.. +.++++++.++|+|++|+|-. ... +
T Consensus 2 mrIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~~~~~a~~~a~~~~~~~~~~~~ell~~~DvVvi~a~~~--~~~---~ 76 (265)
T PRK13304 2 LKIGIVGCGAIASLITKAILSGRINAELYAFYDRNLEKAENLASKTGAKACLSIDELVEDVDLVVECASVN--AVE---E 76 (265)
T ss_pred CEEEEECccHHHHHHHHHHHcCCCCeEEEEEECCCHHHHHHHHHhcCCeeECCHHHHhcCCCEEEEcCChH--HHH---H
Confidence 4799999999999999998865 57744 58887522 122334444 347999999999999999732 221 2
Q ss_pred HHHhcCCCCcEEEEcCCCchhcH---HHHHHHHhCCC
Q 006864 304 ETFAKMKKGVRIVNVARGGVIDE---EALVRALDSGV 337 (628)
Q Consensus 304 ~~l~~mk~gailIN~aRg~~vde---~aL~~aL~~g~ 337 (628)
-....|+.|.-++..+-|.+.|. +.|.++.+++.
T Consensus 77 ~~~~al~~Gk~Vvv~s~gAl~d~~~~~~L~~aA~~~g 113 (265)
T PRK13304 77 VVPKSLENGKDVIIMSVGALADKELFLKLYKLAKENN 113 (265)
T ss_pred HHHHHHHcCCCEEEEchHHhcCHHHHHHHHHHHHHcC
Confidence 22233455666666777777664 35556555543
|
|
| >PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF) | Back alignment and domain information |
|---|
Probab=97.76 E-value=7.1e-05 Score=72.07 Aligned_cols=82 Identities=21% Similarity=0.303 Sum_probs=59.0
Q ss_pred ceeeecCCeEEEEecCh-hHHHHHHHHHcCCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEcCCCCccccccc
Q 006864 223 VGVSLVGKTLAVMGFGK-VGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIF 301 (628)
Q Consensus 223 ~g~~l~GktiGIIGlG~-IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~sl~ell~~aDvV~l~~Plt~~t~~li 301 (628)
.+.+++||++.|||-+. +|+.++..|...|+.|...+.+. .++++.+++||+|+.++.. .++|
T Consensus 30 ~~~~l~Gk~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~T------------~~l~~~~~~ADIVVsa~G~----~~~i 93 (160)
T PF02882_consen 30 YGIDLEGKKVVVVGRSNIVGKPLAMLLLNKGATVTICHSKT------------KNLQEITRRADIVVSAVGK----PNLI 93 (160)
T ss_dssp TT-STTT-EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TTS------------SSHHHHHTTSSEEEE-SSS----TT-B
T ss_pred cCCCCCCCEEEEECCcCCCChHHHHHHHhCCCeEEeccCCC------------CcccceeeeccEEeeeecc----cccc
Confidence 46789999999999995 99999999999999999987653 2578889999999999973 4566
Q ss_pred cHHHHhcCCCCcEEEEcCCCch
Q 006864 302 NDETFAKMKKGVRIVNVARGGV 323 (628)
Q Consensus 302 ~~~~l~~mk~gailIN~aRg~~ 323 (628)
..+ ++|+|+++||++.-..
T Consensus 94 ~~~---~ik~gavVIDvG~~~~ 112 (160)
T PF02882_consen 94 KAD---WIKPGAVVIDVGINYV 112 (160)
T ss_dssp -GG---GS-TTEEEEE--CEEE
T ss_pred ccc---cccCCcEEEecCCccc
Confidence 555 4699999999986543
|
Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A .... |
| >TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II | Back alignment and domain information |
|---|
Probab=97.74 E-value=9.9e-05 Score=78.99 Aligned_cols=85 Identities=18% Similarity=0.299 Sum_probs=63.4
Q ss_pred EEEEecChhHHHHHHHHHc-CCCEEEEECCCCCh---hHHHHcCCcc------------------c-CHHHHhccCCEEE
Q 006864 232 LAVMGFGKVGSEVARRAKG-LGMNVIAHDPYAPA---DKARAVGVEL------------------V-SFDQALATADFIS 288 (628)
Q Consensus 232 iGIIGlG~IG~~vA~~l~~-~G~~V~~~d~~~~~---~~a~~~g~~~------------------~-sl~ell~~aDvV~ 288 (628)
|||+|||+||+.+++.+.. -+|+|++.....+. ..+..+|+.. . ++++++.++|+|+
T Consensus 1 VaInG~GrIGr~varav~~~~d~elVaVnD~~~~~~a~lA~~lgyds~~~~~~~~~~~~~~~l~v~g~~eeLl~~vDiVv 80 (333)
T TIGR01546 1 VGVNGYGTIGKRVADAVTKQDDMKLVGVTKTSPDFEAYRAKELGIPVYAASEEFIPRFEEAGIEVAGTLEDLLEKVDIVV 80 (333)
T ss_pred CEEECCcHHHHHHHHHHhhCCCcEEEEEecCChHHHHHHHHHhCCCEEeecCCcceEeccCceEecCCHHHHhhcCCEEE
Confidence 6899999999999999764 46898886432222 2233333221 1 5899999999999
Q ss_pred EcCCCCccccccccHHHHhcCCCCcEEEEcC
Q 006864 289 LHMPLNPTTSKIFNDETFAKMKKGVRIVNVA 319 (628)
Q Consensus 289 l~~Plt~~t~~li~~~~l~~mk~gailIN~a 319 (628)
.|+| .+.++.+++.+.+|+++++|+-.-
T Consensus 81 e~Tp---~~~~~~na~~~~~~GakaVl~~~p 108 (333)
T TIGR01546 81 DATP---GGIGAKNKPLYEKAGVKAIFQGGE 108 (333)
T ss_pred ECCC---CCCChhhHHHHHhCCcCEEEECCC
Confidence 9876 457899999999999999998753
|
All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's. |
| >PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00012 Score=76.62 Aligned_cols=78 Identities=17% Similarity=0.282 Sum_probs=65.9
Q ss_pred ceeeecCCeEEEEecCh-hHHHHHHHHHcCCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEcCCCCccccccc
Q 006864 223 VGVSLVGKTLAVMGFGK-VGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIF 301 (628)
Q Consensus 223 ~g~~l~GktiGIIGlG~-IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~sl~ell~~aDvV~l~~Plt~~t~~li 301 (628)
.+.++.||++.|||.|. +|+.+|..|...|+.|..++... -+|.+.+++||+|+.+++.. +++
T Consensus 153 ~~i~l~Gk~vvViGrs~iVG~Pla~lL~~~~atVtv~hs~T------------~~l~~~~~~ADIvi~avG~p----~~v 216 (285)
T PRK10792 153 YGIDTYGLNAVVVGASNIVGRPMSLELLLAGCTVTVCHRFT------------KNLRHHVRNADLLVVAVGKP----GFI 216 (285)
T ss_pred cCCCCCCCEEEEECCCcccHHHHHHHHHHCCCeEEEEECCC------------CCHHHHHhhCCEEEEcCCCc----ccc
Confidence 46789999999999999 99999999999999999987542 25888999999999999622 356
Q ss_pred cHHHHhcCCCCcEEEEcC
Q 006864 302 NDETFAKMKKGVRIVNVA 319 (628)
Q Consensus 302 ~~~~l~~mk~gailIN~a 319 (628)
.. +++|+|+++||+|
T Consensus 217 ~~---~~vk~gavVIDvG 231 (285)
T PRK10792 217 PG---EWIKPGAIVIDVG 231 (285)
T ss_pred cH---HHcCCCcEEEEcc
Confidence 55 4469999999998
|
|
| >TIGR01035 hemA glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=97.72 E-value=9.1e-05 Score=81.97 Aligned_cols=97 Identities=24% Similarity=0.318 Sum_probs=71.5
Q ss_pred eecCCeEEEEecChhHHHHHHHHHcCC-CEEEEECCCCCh--hHHHHcCCcc---cCHHHHhccCCEEEEcCCCCccccc
Q 006864 226 SLVGKTLAVMGFGKVGSEVARRAKGLG-MNVIAHDPYAPA--DKARAVGVEL---VSFDQALATADFISLHMPLNPTTSK 299 (628)
Q Consensus 226 ~l~GktiGIIGlG~IG~~vA~~l~~~G-~~V~~~d~~~~~--~~a~~~g~~~---~sl~ell~~aDvV~l~~Plt~~t~~ 299 (628)
.+.|++++|||.|.||+.+++.|+.+| .+|+++|+.... ..+...+... .++.+.+..+|+|+.+++. +..
T Consensus 177 ~l~~~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~rs~~ra~~la~~~g~~~i~~~~l~~~l~~aDvVi~aT~s---~~~ 253 (417)
T TIGR01035 177 SLKGKKALLIGAGEMGELVAKHLLRKGVGKILIANRTYERAEDLAKELGGEAVKFEDLEEYLAEADIVISSTGA---PHP 253 (417)
T ss_pred CccCCEEEEECChHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCeEeeHHHHHHHHhhCCEEEECCCC---CCc
Confidence 378899999999999999999999999 789999987532 2344445332 2567788999999999763 356
Q ss_pred cccHHHHhcCC----CCcEEEEcCCCchhc
Q 006864 300 IFNDETFAKMK----KGVRIVNVARGGVID 325 (628)
Q Consensus 300 li~~~~l~~mk----~gailIN~aRg~~vd 325 (628)
+++.+.++.+. ...+++|.+...=+|
T Consensus 254 ii~~e~l~~~~~~~~~~~~viDla~Prdid 283 (417)
T TIGR01035 254 IVSKEDVERALRERTRPLFIIDIAVPRDVD 283 (417)
T ss_pred eEcHHHHHHHHhcCCCCeEEEEeCCCCCCC
Confidence 78888887652 235788876443333
|
This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA. |
| >cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2 | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00066 Score=69.03 Aligned_cols=131 Identities=21% Similarity=0.200 Sum_probs=92.6
Q ss_pred eeeecCCeEEEEecChhHHHHHHHHHcCCC---EEEEECCC----CCh---------hHHHHcCCc-c-cCHHHHhccCC
Q 006864 224 GVSLVGKTLAVMGFGKVGSEVARRAKGLGM---NVIAHDPY----APA---------DKARAVGVE-L-VSFDQALATAD 285 (628)
Q Consensus 224 g~~l~GktiGIIGlG~IG~~vA~~l~~~G~---~V~~~d~~----~~~---------~~a~~~g~~-~-~sl~ell~~aD 285 (628)
+..+.++++.|+|.|..|+.+|..|...|+ +|+.+|+. ... ..++..+.. . .++.+.++++|
T Consensus 20 g~~l~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~gl~~~~r~~~L~~~~~~la~~~~~~~~~~~l~~~l~~~d 99 (226)
T cd05311 20 GKKIEEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKGVIYEGREDDLNPDKNEIAKETNPEKTGGTLKEALKGAD 99 (226)
T ss_pred CCCccCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCCccccccchhhhHHHHHHHHHhccCcccCCHHHHHhcCC
Confidence 456888999999999999999999999997 49999987 221 112232211 1 36878889999
Q ss_pred EEEEcCCCCccccccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhCCC-eeEEEeeccCCCCCCCCCccccCCcEE
Q 006864 286 FISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGV-VAQAALDVFTEEPPAKDSKLVQHENVT 364 (628)
Q Consensus 286 vV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~~vde~aL~~aL~~g~-i~ga~lDV~~~EP~~~~~~L~~~~nvi 364 (628)
+|+.+.| .++++.+.++.|+++.++...+.- ..|.-+.++-+.|. +..-|. +. -..+..|++
T Consensus 100 vlIgaT~-----~G~~~~~~l~~m~~~~ivf~lsnP--~~e~~~~~A~~~ga~i~a~G~-----~~-----~~~Q~nn~~ 162 (226)
T cd05311 100 VFIGVSR-----PGVVKKEMIKKMAKDPIVFALANP--VPEIWPEEAKEAGADIVATGR-----SD-----FPNQVNNVL 162 (226)
T ss_pred EEEeCCC-----CCCCCHHHHHhhCCCCEEEEeCCC--CCcCCHHHHHHcCCcEEEeCC-----CC-----Cccccceee
Confidence 9999887 477889999999999999988833 24444444445453 444332 21 233667999
Q ss_pred EcCCCCC
Q 006864 365 VTPHLGA 371 (628)
Q Consensus 365 lTPHig~ 371 (628)
+-|-+|-
T Consensus 163 ~fPg~~~ 169 (226)
T cd05311 163 GFPGIFR 169 (226)
T ss_pred ecchhhH
Confidence 9998773
|
Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph |
| >PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ] | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00012 Score=72.23 Aligned_cols=136 Identities=18% Similarity=0.194 Sum_probs=73.8
Q ss_pred CeEEEEecChhHHHHHHHHHcCCCEEEEECCCCChhHHHHcC---------------------Ccc-cCHHHHhccCCEE
Q 006864 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVG---------------------VEL-VSFDQALATADFI 287 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g---------------------~~~-~sl~ell~~aDvV 287 (628)
++|+|||+|.+|..+|..+...|++|++||.....-.....| ... .+.++.+++||++
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t~~~~~ai~~adv~ 80 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRATTDIEEAIKDADVV 80 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEESEHHHHHHH-SEE
T ss_pred CEEEEECCCcchHHHHHHHHhCCCEEEEEeCChHHHHHHhhccccccccchhhhhccccccccchhhhhhhhhhhccceE
Confidence 589999999999999999999999999999643111111111 112 2577889999999
Q ss_pred EEcCCCCcccccccc--------HHHHhcCCCCcEEEEcCCCchhcHHH-HHHHHhCCCeeEEEee-ccCCCCCCCC---
Q 006864 288 SLHMPLNPTTSKIFN--------DETFAKMKKGVRIVNVARGGVIDEEA-LVRALDSGVVAQAALD-VFTEEPPAKD--- 354 (628)
Q Consensus 288 ~l~~Plt~~t~~li~--------~~~l~~mk~gailIN~aRg~~vde~a-L~~aL~~g~i~ga~lD-V~~~EP~~~~--- 354 (628)
++|+|...+-.+..| +.....++++.++|.-+.-.+=-.+. +...|++..-.+.-++ +|.+|=+...
T Consensus 81 ~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~STvppGtt~~~~~~ile~~~~~~~~f~la~~PErl~~G~a~ 160 (185)
T PF03721_consen 81 FICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIESTVPPGTTEELLKPILEKRSGKKEDFHLAYSPERLREGRAI 160 (185)
T ss_dssp EE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEESSSSSTTHHHHHHHHHHHHHCCTTTCEEEEE------TTSHH
T ss_pred EEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEEccEEEEeeehHhhhhhhhhhcccccCCeEEECCCccCCCCcc
Confidence 999994333332222 24455689999999998876655553 3344443211000001 2555544333
Q ss_pred CccccCCcEEE
Q 006864 355 SKLVQHENVTV 365 (628)
Q Consensus 355 ~~L~~~~nvil 365 (628)
..+...|+||+
T Consensus 161 ~d~~~~~rvV~ 171 (185)
T PF03721_consen 161 EDFRNPPRVVG 171 (185)
T ss_dssp HHHHSSSEEEE
T ss_pred hhccCCCEEEE
Confidence 34566788864
|
The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D .... |
| >cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00023 Score=67.10 Aligned_cols=81 Identities=23% Similarity=0.307 Sum_probs=67.3
Q ss_pred ceeeecCCeEEEEecC-hhHHHHHHHHHcCCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEcCCCCccccccc
Q 006864 223 VGVSLVGKTLAVMGFG-KVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIF 301 (628)
Q Consensus 223 ~g~~l~GktiGIIGlG-~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~sl~ell~~aDvV~l~~Plt~~t~~li 301 (628)
.+.++.||++.|+|-+ .+|+.+|..|...|+.|...+... .++++.+++||+|+.+++.. +++
T Consensus 22 ~~~~~~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t------------~~l~~~v~~ADIVvsAtg~~----~~i 85 (140)
T cd05212 22 EGVRLDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKT------------IQLQSKVHDADVVVVGSPKP----EKV 85 (140)
T ss_pred cCCCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCC------------cCHHHHHhhCCEEEEecCCC----Ccc
Confidence 4779999999999987 579999999999999999988642 15788899999999999844 557
Q ss_pred cHHHHhcCCCCcEEEEcCCCc
Q 006864 302 NDETFAKMKKGVRIVNVARGG 322 (628)
Q Consensus 302 ~~~~l~~mk~gailIN~aRg~ 322 (628)
+.+. +|+|++++|++...
T Consensus 86 ~~~~---ikpGa~Vidvg~~~ 103 (140)
T cd05212 86 PTEW---IKPGATVINCSPTK 103 (140)
T ss_pred CHHH---cCCCCEEEEcCCCc
Confidence 6655 59999999998554
|
NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional |
| >PRK09287 6-phosphogluconate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00011 Score=82.05 Aligned_cols=139 Identities=18% Similarity=0.175 Sum_probs=101.6
Q ss_pred hHHHHHHHHHcCCCEEEEECCCCCh-hHHHHc-----CCcc-cCHHHHhcc---CCEEEEcCCCCccccccccHHHHhcC
Q 006864 240 VGSEVARRAKGLGMNVIAHDPYAPA-DKARAV-----GVEL-VSFDQALAT---ADFISLHMPLNPTTSKIFNDETFAKM 309 (628)
Q Consensus 240 IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~~-----g~~~-~sl~ell~~---aDvV~l~~Plt~~t~~li~~~~l~~m 309 (628)
||+.+|++|...|++|.+||+.... +...+. ++.. .+++++++. +|+|++++|-.+.+..++ ...+..|
T Consensus 1 MG~~mA~nL~~~G~~V~v~nrt~~~~~~l~~~~g~~~g~~~~~s~~e~v~~l~~~~~Ii~mv~~g~~v~~Vi-~~l~~~l 79 (459)
T PRK09287 1 MGKNLALNIASHGYTVAVYNRTPEKTDEFLAEEGKGKKIVPAYTLEEFVASLEKPRKILLMVKAGAPVDAVI-EQLLPLL 79 (459)
T ss_pred CcHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhCCCCCeEeeCCHHHHHhhCCCCCEEEEECCCchHHHHHH-HHHHhcC
Confidence 6999999999999999999998632 222221 3433 388988874 899999999888888888 5688889
Q ss_pred CCCcEEEEcCCCchhcHHHHHHHHhCCCeeEEEeeccCCCCCCCCCccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHHH
Q 006864 310 KKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKEAQEGVAIEIAEAVV 389 (628)
Q Consensus 310 k~gailIN~aRg~~vde~aL~~aL~~g~i~ga~lDV~~~EP~~~~~~L~~~~nvilTPHig~~T~ea~~~~~~~~~~~i~ 389 (628)
.+|.++||++....-|...+.+.+++..+.....=|.+.++-.. .-+ .++ .|| +.++++++ .-+.+.+-
T Consensus 80 ~~GdiiID~gn~~~~~t~~~~~~l~~~Gi~fvdapVSGG~~gA~-----~G~-siM---~GG-~~~a~~~~-~piL~~ia 148 (459)
T PRK09287 80 EKGDIIIDGGNSNYKDTIRREKELAEKGIHFIGMGVSGGEEGAL-----HGP-SIM---PGG-QKEAYELV-APILEKIA 148 (459)
T ss_pred CCCCEEEECCCCCHHHHHHHHHHHHhcCCeEEecCCCCCHHHHh-----cCC-EEE---EeC-CHHHHHHH-HHHHHHHh
Confidence 99999999999999999999999988877655555777664322 224 443 344 56666554 34444444
Q ss_pred H
Q 006864 390 G 390 (628)
Q Consensus 390 ~ 390 (628)
.
T Consensus 149 ~ 149 (459)
T PRK09287 149 A 149 (459)
T ss_pred h
Confidence 3
|
|
| >cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00023 Score=70.40 Aligned_cols=98 Identities=21% Similarity=0.238 Sum_probs=70.5
Q ss_pred CcccccccceeeecCCeEEEEecCh-hHHHHHHHHHcCCCEEEEECCCCChhHH--HHcCCcc---cC----HHHHhccC
Q 006864 215 GKWLRSKYVGVSLVGKTLAVMGFGK-VGSEVARRAKGLGMNVIAHDPYAPADKA--RAVGVEL---VS----FDQALATA 284 (628)
Q Consensus 215 g~W~~~~~~g~~l~GktiGIIGlG~-IG~~vA~~l~~~G~~V~~~d~~~~~~~a--~~~g~~~---~s----l~ell~~a 284 (628)
+-|+++...+.++.||++.|||-+. +|+.+|..|...|+.|..+|...-..+. ..+.-.. .+ +.+.+++|
T Consensus 48 ~i~~~~~~~~~~l~GK~vvVIGrS~iVGkPla~lL~~~~AtVti~~~~~~~~~~~~~~~~hs~t~~~~~~~~l~~~~~~A 127 (197)
T cd01079 48 GIYNKILPYGNRLYGKTITIINRSEVVGRPLAALLANDGARVYSVDINGIQVFTRGESIRHEKHHVTDEEAMTLDCLSQS 127 (197)
T ss_pred CCcccccccCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEEecCcccccccccccccccccccchhhHHHHHhhhC
Confidence 3455544558899999999999986 5999999999999999999742210000 0011111 12 77899999
Q ss_pred CEEEEcCCCCcccccc-ccHHHHhcCCCCcEEEEcC
Q 006864 285 DFISLHMPLNPTTSKI-FNDETFAKMKKGVRIVNVA 319 (628)
Q Consensus 285 DvV~l~~Plt~~t~~l-i~~~~l~~mk~gailIN~a 319 (628)
|+|+.+++. .++ +..+.+ |+|+++||++
T Consensus 128 DIVIsAvG~----~~~~i~~d~i---k~GavVIDVG 156 (197)
T cd01079 128 DVVITGVPS----PNYKVPTELL---KDGAICINFA 156 (197)
T ss_pred CEEEEccCC----CCCccCHHHc---CCCcEEEEcC
Confidence 999999983 345 666554 8999999998
|
The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional |
| >PRK07634 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00017 Score=73.49 Aligned_cols=104 Identities=19% Similarity=0.284 Sum_probs=68.2
Q ss_pred cCCeEEEEecChhHHHHHHHHHcCC---CE-EEEECCCC-C-hh-HHHHcCCcc-cCHHHHhccCCEEEEcCCCCccccc
Q 006864 228 VGKTLAVMGFGKVGSEVARRAKGLG---MN-VIAHDPYA-P-AD-KARAVGVEL-VSFDQALATADFISLHMPLNPTTSK 299 (628)
Q Consensus 228 ~GktiGIIGlG~IG~~vA~~l~~~G---~~-V~~~d~~~-~-~~-~a~~~g~~~-~sl~ell~~aDvV~l~~Plt~~t~~ 299 (628)
..++|||||.|++|+.+++.+...| .+ ++++++.. . .+ .....++.. .+++++++++|+|++++|-. ..+.
T Consensus 3 ~~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DiViiavp~~-~~~~ 81 (245)
T PRK07634 3 KKHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNRSNVEKLDQLQARYNVSTTTDWKQHVTSVDTIVLAMPPS-AHEE 81 (245)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECCCCHHHHHHHHHHcCcEEeCChHHHHhcCCEEEEecCHH-HHHH
Confidence 3578999999999999999987655 33 77787642 1 12 223346543 37889999999999999932 2233
Q ss_pred cccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhCC
Q 006864 300 IFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSG 336 (628)
Q Consensus 300 li~~~~l~~mk~gailIN~aRg~~vde~aL~~aL~~g 336 (628)
++ ++.-..++ +.+||.++-| +..+.|.+.+..+
T Consensus 82 v~-~~l~~~~~-~~~vis~~~g--i~~~~l~~~~~~~ 114 (245)
T PRK07634 82 LL-AELSPLLS-NQLVVTVAAG--IGPSYLEERLPKG 114 (245)
T ss_pred HH-HHHHhhcc-CCEEEEECCC--CCHHHHHHHcCCC
Confidence 32 22111233 5689998744 5555677777654
|
|
| >COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00027 Score=73.36 Aligned_cols=102 Identities=24% Similarity=0.327 Sum_probs=77.7
Q ss_pred CeEEEEecChhHHHHHHHHHcCC----CEEEEECCCCCh--hHHHHcCCc-ccCHHHHhccCCEEEEcCCCCcccccccc
Q 006864 230 KTLAVMGFGKVGSEVARRAKGLG----MNVIAHDPYAPA--DKARAVGVE-LVSFDQALATADFISLHMPLNPTTSKIFN 302 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~G----~~V~~~d~~~~~--~~a~~~g~~-~~sl~ell~~aDvV~l~~Plt~~t~~li~ 302 (628)
++|||||+|+||++++..|..-| -+|++.+|.... ..+..+|+. ..+.+++..++|+|+|++. |+ .-
T Consensus 2 ~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~~e~~~~l~~~~g~~~~~~~~~~~~~advv~LavK--Pq----~~ 75 (266)
T COG0345 2 MKIGFIGAGNMGEAILSGLLKSGALPPEEIIVTNRSEEKRAALAAEYGVVTTTDNQEAVEEADVVFLAVK--PQ----DL 75 (266)
T ss_pred ceEEEEccCHHHHHHHHHHHhcCCCCcceEEEeCCCHHHHHHHHHHcCCcccCcHHHHHhhCCEEEEEeC--hH----hH
Confidence 58999999999999999999888 589999998633 245567766 3467799999999999995 43 23
Q ss_pred HHHHhcCC---CCcEEEEcCCCchhcHHHHHHHHhCCCee
Q 006864 303 DETFAKMK---KGVRIVNVARGGVIDEEALVRALDSGVVA 339 (628)
Q Consensus 303 ~~~l~~mk---~gailIN~aRg~~vde~aL~~aL~~g~i~ 339 (628)
.+.+..+| ++.+||.++-| +..+.|.+++.+-++.
T Consensus 76 ~~vl~~l~~~~~~~lvISiaAG--v~~~~l~~~l~~~~vv 113 (266)
T COG0345 76 EEVLSKLKPLTKDKLVISIAAG--VSIETLERLLGGLRVV 113 (266)
T ss_pred HHHHHHhhcccCCCEEEEEeCC--CCHHHHHHHcCCCceE
Confidence 56666676 68999999855 5666777777644443
|
|
| >PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1 | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00011 Score=71.15 Aligned_cols=94 Identities=26% Similarity=0.406 Sum_probs=67.7
Q ss_pred eecCCeEEEEecChhHHHHHHHHHcCCCEEEEECCCCCh-hHHHHcCCc---c------------------------cCH
Q 006864 226 SLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPA-DKARAVGVE---L------------------------VSF 277 (628)
Q Consensus 226 ~l~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~~g~~---~------------------------~sl 277 (628)
.+...++.|+|.|+.|+..++.|+++|++|..+|.+... ......+.. . ..|
T Consensus 17 ~~~p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~f 96 (168)
T PF01262_consen 17 GVPPAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERPERLRQLESLGAYFIEVDYEDHLERKDFDKADYYEHPESYESNF 96 (168)
T ss_dssp EE-T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTTEESEETTTTTTTSB-CCHHHCHHHCCHHHHHH
T ss_pred CCCCeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCHHHHHhhhcccCceEEEcccccccccccchhhhhHHHHHhHHHH
Confidence 567799999999999999999999999999999976422 222233221 1 137
Q ss_pred HHHhccCCEEEEcCCC-CccccccccHHHHhcCCCCcEEEEcC
Q 006864 278 DQALATADFISLHMPL-NPTTSKIFNDETFAKMKKGVRIVNVA 319 (628)
Q Consensus 278 ~ell~~aDvV~l~~Pl-t~~t~~li~~~~l~~mk~gailIN~a 319 (628)
.+.++.+|+|+.++-. ....-.++.++.++.||++.+|+|++
T Consensus 97 ~~~i~~~d~vI~~~~~~~~~~P~lvt~~~~~~m~~gsvIvDis 139 (168)
T PF01262_consen 97 AEFIAPADIVIGNGLYWGKRAPRLVTEEMVKSMKPGSVIVDIS 139 (168)
T ss_dssp HHHHHH-SEEEEHHHBTTSS---SBEHHHHHTSSTTEEEEETT
T ss_pred HHHHhhCcEEeeecccCCCCCCEEEEhHHhhccCCCceEEEEE
Confidence 7889999999864432 44566799999999999999999996
|
4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A .... |
| >PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00011 Score=70.25 Aligned_cols=89 Identities=21% Similarity=0.364 Sum_probs=60.6
Q ss_pred eEEEEecChhHHHHHHHHHcCCCEEEEECCCCCh-hHHHHcC--------Cc-------ccCHHHHhccCCEEEEcCCCC
Q 006864 231 TLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPA-DKARAVG--------VE-------LVSFDQALATADFISLHMPLN 294 (628)
Q Consensus 231 tiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~~g--------~~-------~~sl~ell~~aDvV~l~~Plt 294 (628)
+|+|+|.|+.|.++|..|...|.+|..|.+.... +.....+ +. ..+++++++.||+|++++|-.
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a~~~ad~IiiavPs~ 80 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKATTDLEEALEDADIIIIAVPSQ 80 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEEESSHHHHHTT-SEEEE-S-GG
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhCCCCCCCCCcccCcccccccCHHHHhCcccEEEecccHH
Confidence 6899999999999999999999999999986411 1111111 11 127999999999999999943
Q ss_pred ccccccccHHHHhcCCCCcEEEEcCCC
Q 006864 295 PTTSKIFNDETFAKMKKGVRIVNVARG 321 (628)
Q Consensus 295 ~~t~~li~~~~l~~mk~gailIN~aRg 321 (628)
. .+.+ -++....++++..+|++..|
T Consensus 81 ~-~~~~-~~~l~~~l~~~~~ii~~~KG 105 (157)
T PF01210_consen 81 A-HREV-LEQLAPYLKKGQIIISATKG 105 (157)
T ss_dssp G-HHHH-HHHHTTTSHTT-EEEETS-S
T ss_pred H-HHHH-HHHHhhccCCCCEEEEecCC
Confidence 2 2222 34455557889999999865
|
This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A .... |
| >cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00015 Score=77.08 Aligned_cols=93 Identities=24% Similarity=0.285 Sum_probs=66.0
Q ss_pred ecCCeEEEEecChhHHHHHHHHHcCC-CEEEEECCCCC--hhHHHHcCCccc---CHHHHhccCCEEEEcCCCCcccccc
Q 006864 227 LVGKTLAVMGFGKVGSEVARRAKGLG-MNVIAHDPYAP--ADKARAVGVELV---SFDQALATADFISLHMPLNPTTSKI 300 (628)
Q Consensus 227 l~GktiGIIGlG~IG~~vA~~l~~~G-~~V~~~d~~~~--~~~a~~~g~~~~---sl~ell~~aDvV~l~~Plt~~t~~l 300 (628)
+.|++++|||.|.||+.+++.|+..| .+|.++|+... .+.+..+|.... ++.+.+.++|+|+.++|... .+.+
T Consensus 176 l~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~g~~~~~~~~~~~~l~~aDvVi~at~~~~-~~~~ 254 (311)
T cd05213 176 LKGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEELAKELGGNAVPLDELLELLNEADVVISATGAPH-YAKI 254 (311)
T ss_pred ccCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHcCCeEEeHHHHHHHHhcCCEEEECCCCCc-hHHH
Confidence 68999999999999999999999876 67899998753 234555665443 35677889999999998443 2222
Q ss_pred ccHHHHhcC-CCCcEEEEcCCC
Q 006864 301 FNDETFAKM-KKGVRIVNVARG 321 (628)
Q Consensus 301 i~~~~l~~m-k~gailIN~aRg 321 (628)
+ +..++.. +++.++||++..
T Consensus 255 ~-~~~~~~~~~~~~~viDlavP 275 (311)
T cd05213 255 V-ERAMKKRSGKPRLIVDLAVP 275 (311)
T ss_pred H-HHHHhhCCCCCeEEEEeCCC
Confidence 2 2233322 357788888753
|
Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, |
| >PRK06349 homoserine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.0051 Score=68.39 Aligned_cols=67 Identities=16% Similarity=0.273 Sum_probs=45.8
Q ss_pred cEEEEeccCCCCchhhHHhhhhcCCccccceEEeeeecCccEEEEEEeCCCCCH---HHHHHHhcccCccc
Q 006864 559 NLILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDEEPNQ---DSLKEIGKVHFVAR 626 (628)
Q Consensus 559 ~~Llv~~~D~PGvIa~V~~iL~~~~INIa~m~v~R~~~gg~Al~~i~vD~~~~~---~~l~~L~~l~~v~~ 626 (628)
+.|-+...|+||++++|+.+|++++|||..+..... .++.+-+++-++..... +++++|++++.|..
T Consensus 349 yylRl~v~d~pGvLa~I~~~f~~~~vsI~si~q~~~-~~~~~~ivivT~~~~e~~l~~~i~~L~~l~~V~~ 418 (426)
T PRK06349 349 YYLRLLVADKPGVLAKIAAIFAENGISIESILQKGA-GGEGAEIVIVTHETSEAALRAALAAIEALDVVLG 418 (426)
T ss_pred EEEEEEecCCcchHHHHHHHHhhcCccEEEEEeccC-CCCceeEEEEEEeCCHHHHHHHHHHHhcCccccc
Confidence 555666789999999999999999999998876543 23445444444433223 45566666666543
|
|
| >PRK12921 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00023 Score=74.75 Aligned_cols=108 Identities=18% Similarity=0.169 Sum_probs=73.9
Q ss_pred CeEEEEecChhHHHHHHHHHcCCCEEEEECCCCChhHHHHcCCc--------------ccCHHHHhccCCEEEEcCCCCc
Q 006864 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVE--------------LVSFDQALATADFISLHMPLNP 295 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~--------------~~sl~ell~~aDvV~l~~Plt~ 295 (628)
++|+|||.|.||..+|..|...|.+|..|++....+...+.|.. ..+.+++...+|+|++++|-.
T Consensus 1 mkI~IiG~G~iG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vilavk~~- 79 (305)
T PRK12921 1 MRIAVVGAGAVGGTFGGRLLEAGRDVTFLVRPKRAKALRERGLVIRSDHGDAVVPGPVITDPEELTGPFDLVILAVKAY- 79 (305)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCceEEEecHHHHHHHHhCCeEEEeCCCeEEecceeecCHHHccCCCCEEEEEeccc-
Confidence 47999999999999999999999999999982222223333321 124566678999999999943
Q ss_pred cccccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhCCCeeE
Q 006864 296 TTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQ 340 (628)
Q Consensus 296 ~t~~li~~~~l~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~g 340 (628)
++...+ +.....++++.+||.+.-| +-.++.+.+.+...++.+
T Consensus 80 ~~~~~~-~~l~~~~~~~~~ii~~~nG-~~~~~~l~~~~~~~~v~~ 122 (305)
T PRK12921 80 QLDAAI-PDLKPLVGEDTVIIPLQNG-IGQLEQLEPYFGRERVLG 122 (305)
T ss_pred CHHHHH-HHHHhhcCCCCEEEEeeCC-CChHHHHHHhCCcccEEE
Confidence 333333 2333345778888877654 455777777776666543
|
|
| >PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00017 Score=75.50 Aligned_cols=79 Identities=19% Similarity=0.319 Sum_probs=66.4
Q ss_pred ceeeecCCeEEEEecCh-hHHHHHHHHHcCCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEcCCCCccccccc
Q 006864 223 VGVSLVGKTLAVMGFGK-VGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIF 301 (628)
Q Consensus 223 ~g~~l~GktiGIIGlG~-IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~sl~ell~~aDvV~l~~Plt~~t~~li 301 (628)
.+.++.||++.|||.|. +|+.+|..|...|+.|..++... -+|.+..++||+|+.++-. .+++
T Consensus 158 ~~i~l~Gk~vvViGrs~iVGkPla~lL~~~~atVtv~hs~T------------~~l~~~~~~ADIvv~AvG~----p~~i 221 (287)
T PRK14176 158 YGVDIEGKNAVIVGHSNVVGKPMAAMLLNRNATVSVCHVFT------------DDLKKYTLDADILVVATGV----KHLI 221 (287)
T ss_pred cCCCCCCCEEEEECCCcccHHHHHHHHHHCCCEEEEEeccC------------CCHHHHHhhCCEEEEccCC----cccc
Confidence 46789999999999999 99999999999999999987532 1578889999999998763 3466
Q ss_pred cHHHHhcCCCCcEEEEcCC
Q 006864 302 NDETFAKMKKGVRIVNVAR 320 (628)
Q Consensus 302 ~~~~l~~mk~gailIN~aR 320 (628)
..+ ++|+|+++||+|-
T Consensus 222 ~~~---~vk~gavVIDvGi 237 (287)
T PRK14176 222 KAD---MVKEGAVIFDVGI 237 (287)
T ss_pred CHH---HcCCCcEEEEecc
Confidence 655 5699999999984
|
|
| >cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00015 Score=58.74 Aligned_cols=66 Identities=14% Similarity=0.304 Sum_probs=55.3
Q ss_pred EEEeccCCCCchhhHHhhhhcCCccccceEEeeeecCccEEEEEEeCCC-CCHHHHHHHhcccCcccc
Q 006864 561 ILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDEE-PNQDSLKEIGKVHFVARI 627 (628)
Q Consensus 561 Llv~~~D~PGvIa~V~~iL~~~~INIa~m~v~R~~~gg~Al~~i~vD~~-~~~~~l~~L~~l~~v~~v 627 (628)
|.+..+|+||+++++++.|.++++||.+|..... .++.+.+.+.++.. ..++++++|+++++|..+
T Consensus 3 l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~L~~~~~v~~v 69 (72)
T cd04874 3 LSIIAEDKPGVLRDLTGVIAEHGGNITYTQQFIE-REGKARIYMELEGVGDIEELVEELRSLPIVREV 69 (72)
T ss_pred EEEEeCCCCChHHHHHHHHHhCCCCEEEEEEecc-CCCeEEEEEEEeccccHHHHHHHHhCCCCeEEE
Confidence 5567899999999999999999999999988654 35677788888875 455899999999998775
|
a.), putative amino acid binding protein, Af1403, and related domains. This CD includes the N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, from Archaeoglobus fulgidus and other related archeal ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains. |
| >PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00015 Score=75.72 Aligned_cols=79 Identities=19% Similarity=0.251 Sum_probs=67.7
Q ss_pred ceeeecCCeEEEEecC-hhHHHHHHHHHcCCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEcCCCCccccccc
Q 006864 223 VGVSLVGKTLAVMGFG-KVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIF 301 (628)
Q Consensus 223 ~g~~l~GktiGIIGlG-~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~sl~ell~~aDvV~l~~Plt~~t~~li 301 (628)
.+.+++||++.|+|.+ ..|+.+|..|..+|+.|..++... .++.+.+++||+|+.+++.. +++
T Consensus 146 ~~i~l~Gk~V~ViGrs~~vGrpla~lL~~~~atVtv~hs~t------------~~L~~~~~~ADIvI~Avgk~----~lv 209 (279)
T PRK14178 146 YKISIAGKRAVVVGRSIDVGRPMAALLLNADATVTICHSKT------------ENLKAELRQADILVSAAGKA----GFI 209 (279)
T ss_pred cCCCCCCCEEEEECCCccccHHHHHHHHhCCCeeEEEecCh------------hHHHHHHhhCCEEEECCCcc----ccc
Confidence 4678999999999999 999999999999999998887542 25888999999999999732 677
Q ss_pred cHHHHhcCCCCcEEEEcCC
Q 006864 302 NDETFAKMKKGVRIVNVAR 320 (628)
Q Consensus 302 ~~~~l~~mk~gailIN~aR 320 (628)
.++.+ |+|+++||+|-
T Consensus 210 ~~~~v---k~GavVIDVgi 225 (279)
T PRK14178 210 TPDMV---KPGATVIDVGI 225 (279)
T ss_pred CHHHc---CCCcEEEEeec
Confidence 77775 99999999984
|
|
| >PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00017 Score=75.42 Aligned_cols=80 Identities=18% Similarity=0.282 Sum_probs=67.2
Q ss_pred ceeeecCCeEEEEecC-hhHHHHHHHHHcCCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEcCCCCccccccc
Q 006864 223 VGVSLVGKTLAVMGFG-KVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIF 301 (628)
Q Consensus 223 ~g~~l~GktiGIIGlG-~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~sl~ell~~aDvV~l~~Plt~~t~~li 301 (628)
.+.++.||++.|||-| .+|+.+|..|...|+.|..++... -+|.+.+++||+|+.+++ ..+++
T Consensus 151 ~~i~l~Gk~vvVvGrs~~VG~Pla~lL~~~gAtVtv~hs~t------------~~l~~~~~~ADIvV~AvG----~p~~i 214 (285)
T PRK14191 151 YHIEIKGKDVVIIGASNIVGKPLAMLMLNAGASVSVCHILT------------KDLSFYTQNADIVCVGVG----KPDLI 214 (285)
T ss_pred hCCCCCCCEEEEECCCchhHHHHHHHHHHCCCEEEEEeCCc------------HHHHHHHHhCCEEEEecC----CCCcC
Confidence 4678999999999999 999999999999999999886432 136788999999999996 34577
Q ss_pred cHHHHhcCCCCcEEEEcCCC
Q 006864 302 NDETFAKMKKGVRIVNVARG 321 (628)
Q Consensus 302 ~~~~l~~mk~gailIN~aRg 321 (628)
..+.+ |+|+++||++-.
T Consensus 215 ~~~~v---k~GavVIDvGi~ 231 (285)
T PRK14191 215 KASMV---KKGAVVVDIGIN 231 (285)
T ss_pred CHHHc---CCCcEEEEeecc
Confidence 76655 999999999843
|
|
| >PRK00045 hemA glutamyl-tRNA reductase; Reviewed | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.0002 Score=79.40 Aligned_cols=91 Identities=23% Similarity=0.356 Sum_probs=67.6
Q ss_pred eecCCeEEEEecChhHHHHHHHHHcCCC-EEEEECCCCCh--hHHHHcCCccc---CHHHHhccCCEEEEcCCCCccccc
Q 006864 226 SLVGKTLAVMGFGKVGSEVARRAKGLGM-NVIAHDPYAPA--DKARAVGVELV---SFDQALATADFISLHMPLNPTTSK 299 (628)
Q Consensus 226 ~l~GktiGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~~~--~~a~~~g~~~~---sl~ell~~aDvV~l~~Plt~~t~~ 299 (628)
.+.|++++|||.|.||+.+++.|+..|. +|+++++.... ..+...|.... ++.+.+.++|+|+.++|.. ..
T Consensus 179 ~~~~~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~~~ra~~la~~~g~~~~~~~~~~~~l~~aDvVI~aT~s~---~~ 255 (423)
T PRK00045 179 DLSGKKVLVIGAGEMGELVAKHLAEKGVRKITVANRTLERAEELAEEFGGEAIPLDELPEALAEADIVISSTGAP---HP 255 (423)
T ss_pred CccCCEEEEECchHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcCCcEeeHHHHHHHhccCCEEEECCCCC---Cc
Confidence 4788999999999999999999999997 89999987532 23444554333 4567788999999998733 45
Q ss_pred cccHHHHhcC-----CCCcEEEEcC
Q 006864 300 IFNDETFAKM-----KKGVRIVNVA 319 (628)
Q Consensus 300 li~~~~l~~m-----k~gailIN~a 319 (628)
++..+.++.+ +.+.++||.+
T Consensus 256 ~i~~~~l~~~~~~~~~~~~vviDla 280 (423)
T PRK00045 256 IIGKGMVERALKARRHRPLLLVDLA 280 (423)
T ss_pred EEcHHHHHHHHhhccCCCeEEEEeC
Confidence 6777777654 2456777775
|
|
| >PRK06522 2-dehydropantoate 2-reductase; Reviewed | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00051 Score=71.92 Aligned_cols=107 Identities=15% Similarity=0.162 Sum_probs=73.0
Q ss_pred CeEEEEecChhHHHHHHHHHcCCCEEEEECCCC-ChhHHHHcCCcc------------cCHHHHhccCCEEEEcCCCCcc
Q 006864 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA-PADKARAVGVEL------------VSFDQALATADFISLHMPLNPT 296 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~g~~~------------~sl~ell~~aDvV~l~~Plt~~ 296 (628)
++|+|||.|.||+.+|..|...|.+|..+++.. ..+...+.|... .+..++ +.+|+|++++|-. +
T Consensus 1 m~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~d~vila~k~~-~ 78 (304)
T PRK06522 1 MKIAILGAGAIGGLFGAALAQAGHDVTLVARRGAHLDALNENGLRLEDGEITVPVLAADDPAEL-GPQDLVILAVKAY-Q 78 (304)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEECChHHHHHHHHcCCcccCCceeecccCCCChhHc-CCCCEEEEecccc-c
Confidence 369999999999999999999999999999854 223333334421 245555 8999999999943 3
Q ss_pred ccccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhCCCeeE
Q 006864 297 TSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQ 340 (628)
Q Consensus 297 t~~li~~~~l~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~g 340 (628)
+...+ +.....+.+++.+|.+.-| +-.++.+.+.+....+.+
T Consensus 79 ~~~~~-~~l~~~l~~~~~iv~~~nG-~~~~~~l~~~~~~~~i~~ 120 (304)
T PRK06522 79 LPAAL-PSLAPLLGPDTPVLFLQNG-VGHLEELAAYIGPERVLG 120 (304)
T ss_pred HHHHH-HHHhhhcCCCCEEEEecCC-CCcHHHHHHhcCcccEEE
Confidence 44333 2333446677888888776 334566677676655543
|
|
| >PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00029 Score=74.03 Aligned_cols=80 Identities=19% Similarity=0.283 Sum_probs=65.9
Q ss_pred ceeeecCCeEEEEecCh-hHHHHHHHHHcCCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEcCCCCccccccc
Q 006864 223 VGVSLVGKTLAVMGFGK-VGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIF 301 (628)
Q Consensus 223 ~g~~l~GktiGIIGlG~-IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~sl~ell~~aDvV~l~~Plt~~t~~li 301 (628)
.+.++.||++.|||.|. +|+.+|..|...|+.|..+++.. .+|.+.+++||+|+.+++ .+ +++
T Consensus 153 ~~i~l~Gk~vvViG~gg~vGkpia~~L~~~gatVtv~~~~t------------~~L~~~~~~aDIvI~AtG-~~---~~v 216 (283)
T PRK14192 153 YNIELAGKHAVVVGRSAILGKPMAMMLLNANATVTICHSRT------------QNLPELVKQADIIVGAVG-KP---ELI 216 (283)
T ss_pred cCCCCCCCEEEEECCcHHHHHHHHHHHHhCCCEEEEEeCCc------------hhHHHHhccCCEEEEccC-CC---CcC
Confidence 46789999999999998 99999999999999999988631 246777899999999997 33 256
Q ss_pred cHHHHhcCCCCcEEEEcCCC
Q 006864 302 NDETFAKMKKGVRIVNVARG 321 (628)
Q Consensus 302 ~~~~l~~mk~gailIN~aRg 321 (628)
..+. +|+|++++|++-.
T Consensus 217 ~~~~---lk~gavViDvg~n 233 (283)
T PRK14192 217 KKDW---IKQGAVVVDAGFH 233 (283)
T ss_pred CHHH---cCCCCEEEEEEEe
Confidence 6544 6999999999743
|
|
| >PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.0002 Score=70.16 Aligned_cols=127 Identities=20% Similarity=0.298 Sum_probs=77.9
Q ss_pred eEEEEecChhHHHHHHHHHcCCCEEEEECCCCCh-hH----HH-------HcC-------------Ccc-cCHHHHhccC
Q 006864 231 TLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPA-DK----AR-------AVG-------------VEL-VSFDQALATA 284 (628)
Q Consensus 231 tiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~----a~-------~~g-------------~~~-~sl~ell~~a 284 (628)
+|+|||.|.||+.+|..+...|++|..||+.... +. .. ..| +.. .+++++. .|
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl~~~~-~a 79 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFTTDLEEAV-DA 79 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEESSGGGGC-TE
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccccCHHHHh-hh
Confidence 6899999999999999999999999999987421 11 00 111 111 3688888 99
Q ss_pred CEEEEcCCCCccccccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhC-CCeeEEEeeccCCCCCCCCCccccCCcE
Q 006864 285 DFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDS-GVVAQAALDVFTEEPPAKDSKLVQHENV 363 (628)
Q Consensus 285 DvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~~vde~aL~~aL~~-g~i~ga~lDV~~~EP~~~~~~L~~~~nv 363 (628)
|+|+=++|-.-+.+.-+-++.-+.++++++|...+++ +.-..|...+.. .++ .++-.|. |+ ...||.+ |
T Consensus 80 dlViEai~E~l~~K~~~~~~l~~~~~~~~ilasnTSs--l~i~~la~~~~~p~R~--ig~Hf~~--P~-~~~~lVE---v 149 (180)
T PF02737_consen 80 DLVIEAIPEDLELKQELFAELDEICPPDTILASNTSS--LSISELAAALSRPERF--IGMHFFN--PP-HLMPLVE---V 149 (180)
T ss_dssp SEEEE-S-SSHHHHHHHHHHHHCCS-TTSEEEE--SS--S-HHHHHTTSSTGGGE--EEEEE-S--ST-TT--EEE---E
T ss_pred heehhhccccHHHHHHHHHHHHHHhCCCceEEecCCC--CCHHHHHhccCcCceE--EEEeccc--cc-ccCceEE---E
Confidence 9999999977777766666666678899988876544 444556666643 366 5555553 43 2345554 4
Q ss_pred EEcCC
Q 006864 364 TVTPH 368 (628)
Q Consensus 364 ilTPH 368 (628)
+-.|+
T Consensus 150 v~~~~ 154 (180)
T PF02737_consen 150 VPGPK 154 (180)
T ss_dssp EE-TT
T ss_pred eCCCC
Confidence 55554
|
1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B .... |
| >PLN00203 glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.0002 Score=81.05 Aligned_cols=92 Identities=15% Similarity=0.185 Sum_probs=68.4
Q ss_pred eecCCeEEEEecChhHHHHHHHHHcCCC-EEEEECCCCCh--hHHHHc-CC--cc---cCHHHHhccCCEEEEcCCCCcc
Q 006864 226 SLVGKTLAVMGFGKVGSEVARRAKGLGM-NVIAHDPYAPA--DKARAV-GV--EL---VSFDQALATADFISLHMPLNPT 296 (628)
Q Consensus 226 ~l~GktiGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~~~--~~a~~~-g~--~~---~sl~ell~~aDvV~l~~Plt~~ 296 (628)
.+.+++++|||.|.||+.+++.|...|. +|+++++.... ..+..+ +. .. .++.+.+.+||+|+.++|.
T Consensus 263 ~l~~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs~era~~La~~~~g~~i~~~~~~dl~~al~~aDVVIsAT~s--- 339 (519)
T PLN00203 263 SHASARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRSEERVAALREEFPDVEIIYKPLDEMLACAAEADVVFTSTSS--- 339 (519)
T ss_pred CCCCCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhCCCceEeecHhhHHHHHhcCCEEEEccCC---
Confidence 4789999999999999999999999997 79999987532 222223 22 11 2566788999999998763
Q ss_pred ccccccHHHHhcCCCC-------cEEEEcCC
Q 006864 297 TSKIFNDETFAKMKKG-------VRIVNVAR 320 (628)
Q Consensus 297 t~~li~~~~l~~mk~g-------ailIN~aR 320 (628)
...++.++.++.++++ -+|||.+=
T Consensus 340 ~~pvI~~e~l~~~~~~~~~~~~~~~~IDLAv 370 (519)
T PLN00203 340 ETPLFLKEHVEALPPASDTVGGKRLFVDISV 370 (519)
T ss_pred CCCeeCHHHHHHhhhcccccCCCeEEEEeCC
Confidence 4668888888877432 37777763
|
|
| >COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.0015 Score=70.51 Aligned_cols=142 Identities=22% Similarity=0.280 Sum_probs=89.9
Q ss_pred CeEEEEecChhHHHHHHHHHcCCCEEEEECCCCChh--------------------HHHHcC-CcccCHHHHhccCCEEE
Q 006864 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPAD--------------------KARAVG-VELVSFDQALATADFIS 288 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~--------------------~a~~~g-~~~~sl~ell~~aDvV~ 288 (628)
.+|||||||-||..+|..+...|++|++||-....- .+.+.| .+..+--+.++.||+++
T Consensus 10 ~~I~ViGLGYVGLPlA~~fA~~G~~ViG~DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v~~g~lraTtd~~~l~~~dv~i 89 (436)
T COG0677 10 ATIGVIGLGYVGLPLAAAFASAGFKVIGVDINQKKVDKLNRGESYIEEPDLDEVVKEAVESGKLRATTDPEELKECDVFI 89 (436)
T ss_pred eEEEEEccccccHHHHHHHHHcCCceEeEeCCHHHHHHHhCCcceeecCcHHHHHHHHHhcCCceEecChhhcccCCEEE
Confidence 799999999999999999999999999999543111 111222 22222223455999999
Q ss_pred EcCCCCcccc-cc------cc--HHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhCC--CeeEEEeec---cCCCCCCCC
Q 006864 289 LHMPLNPTTS-KI------FN--DETFAKMKKGVRIVNVARGGVIDEEALVRALDSG--VVAQAALDV---FTEEPPAKD 354 (628)
Q Consensus 289 l~~Plt~~t~-~l------i~--~~~l~~mk~gailIN~aRg~~vde~aL~~aL~~g--~i~ga~lDV---~~~EP~~~~ 354 (628)
+|+| ||-+. +- .+ +..-..||+|.++|==+....=-.+.++..|.+. .+ ..+-|+ |.+|-..+.
T Consensus 90 I~VP-TPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v~~plle~~sgL-~~~~Df~laysPERv~PG 167 (436)
T COG0677 90 ICVP-TPLKKYREPDLSYVESAARSIAPVLKKGDLVILESTTPPGTTEEVVKPLLEERSGL-KFGEDFYLAYSPERVLPG 167 (436)
T ss_pred EEec-CCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHHHHHhhcCCC-cccceeeEeeCccccCCC
Confidence 9999 44333 11 11 2334569999999988776666677777666543 22 122342 444433233
Q ss_pred C---ccccCCcEEEcCCCCCCcHHHHH
Q 006864 355 S---KLVQHENVTVTPHLGASTKEAQE 378 (628)
Q Consensus 355 ~---~L~~~~nvilTPHig~~T~ea~~ 378 (628)
+ .+...|+| +||.|.++-+
T Consensus 168 ~~~~el~~~~kV-----IgG~tp~~~e 189 (436)
T COG0677 168 NVLKELVNNPKV-----IGGVTPKCAE 189 (436)
T ss_pred chhhhhhcCCce-----eecCCHHHHH
Confidence 3 44566777 5888877643
|
|
| >PTZ00431 pyrroline carboxylate reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00038 Score=72.10 Aligned_cols=123 Identities=18% Similarity=0.236 Sum_probs=75.9
Q ss_pred CCeEEEEecChhHHHHHHHHHcCC----CEEEEECCCCChhHHHHcCCcc-cCHHHHhccCCEEEEcCCCCccccccccH
Q 006864 229 GKTLAVMGFGKVGSEVARRAKGLG----MNVIAHDPYAPADKARAVGVEL-VSFDQALATADFISLHMPLNPTTSKIFND 303 (628)
Q Consensus 229 GktiGIIGlG~IG~~vA~~l~~~G----~~V~~~d~~~~~~~a~~~g~~~-~sl~ell~~aDvV~l~~Plt~~t~~li~~ 303 (628)
.++|||||+|+||+++++.|...+ -+++++|+.... .++.. .+..+++.+||+|++++| ...++.++.
T Consensus 3 ~mkI~iIG~G~mG~ai~~~l~~~~~~~~~~i~~~~~~~~~-----~~~~~~~~~~~~~~~~D~Vilavk-p~~~~~vl~- 75 (260)
T PTZ00431 3 NIRVGFIGLGKMGSALAYGIENSNIIGKENIYYHTPSKKN-----TPFVYLQSNEELAKTCDIIVLAVK-PDLAGKVLL- 75 (260)
T ss_pred CCEEEEECccHHHHHHHHHHHhCCCCCcceEEEECCChhc-----CCeEEeCChHHHHHhCCEEEEEeC-HHHHHHHHH-
Confidence 368999999999999999998765 258999886421 23322 367788899999999998 333444443
Q ss_pred HHHhcCCCCcEEEEcCCCchhcHHHHHHHHhCC-CeeEEEeeccCCCCCCCCCccccCCcEEEcCCCC
Q 006864 304 ETFAKMKKGVRIVNVARGGVIDEEALVRALDSG-VVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLG 370 (628)
Q Consensus 304 ~~l~~mk~gailIN~aRg~~vde~aL~~aL~~g-~i~ga~lDV~~~EP~~~~~~L~~~~nvilTPHig 370 (628)
+....++++.+|..++- +..+.+.+.+... ++. .+..+-| -++..-..+++|.-.
T Consensus 76 ~i~~~l~~~~iIS~~aG---i~~~~l~~~~~~~~~vv----r~mPn~p-----~~~g~g~t~i~~~~~ 131 (260)
T PTZ00431 76 EIKPYLGSKLLISICGG---LNLKTLEEMVGVEAKIV----RVMPNTP-----SLVGQGSLVFCANNN 131 (260)
T ss_pred HHHhhccCCEEEEEeCC---ccHHHHHHHcCCCCeEE----EECCCch-----hHhcceeEEEEeCCC
Confidence 23334555555444442 3355555555433 232 2333332 345556677777543
|
|
| >PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00059 Score=71.43 Aligned_cols=81 Identities=22% Similarity=0.313 Sum_probs=67.2
Q ss_pred ceeeecCCeEEEEecCh-hHHHHHHHHHcCCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEcCCCCccccccc
Q 006864 223 VGVSLVGKTLAVMGFGK-VGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIF 301 (628)
Q Consensus 223 ~g~~l~GktiGIIGlG~-IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~sl~ell~~aDvV~l~~Plt~~t~~li 301 (628)
.+.++.||++.|||-+. +|+.+|..|...|+.|..++... .++.+.+++||+|+.+++. .+++
T Consensus 151 ~~i~l~Gk~vvVvGrS~iVGkPla~lL~~~~atVtichs~T------------~~l~~~~~~ADIvI~AvG~----~~~i 214 (284)
T PRK14170 151 TGTQIEGKRAVVIGRSNIVGKPVAQLLLNENATVTIAHSRT------------KDLPQVAKEADILVVATGL----AKFV 214 (284)
T ss_pred hCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC------------CCHHHHHhhCCEEEEecCC----cCcc
Confidence 47899999999999985 69999999999999999886542 2578889999999999973 4567
Q ss_pred cHHHHhcCCCCcEEEEcCCCc
Q 006864 302 NDETFAKMKKGVRIVNVARGG 322 (628)
Q Consensus 302 ~~~~l~~mk~gailIN~aRg~ 322 (628)
..+.+ |+|+++||++--.
T Consensus 215 ~~~~v---k~GavVIDvGin~ 232 (284)
T PRK14170 215 KKDYI---KPGAIVIDVGMDR 232 (284)
T ss_pred CHHHc---CCCCEEEEccCcc
Confidence 76655 8999999998443
|
|
| >cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00036 Score=57.18 Aligned_cols=62 Identities=18% Similarity=0.315 Sum_probs=53.5
Q ss_pred EEEEeccCCCCchhhHHhhhhcCCccccceEEeeeecCccEEEEEEeCCCCCHHHHHHHhcc
Q 006864 560 LILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDEEPNQDSLKEIGKV 621 (628)
Q Consensus 560 ~Llv~~~D~PGvIa~V~~iL~~~~INIa~m~v~R~~~gg~Al~~i~vD~~~~~~~l~~L~~l 621 (628)
-+-+..+|+||.++++...|+++++||.++...+...++.+.+++.++...++++++.|++.
T Consensus 3 ~~~v~~~d~pG~l~~i~~~l~~~~inI~~i~~~~~~~~~~~~v~i~v~~~~~~~~~~~L~~~ 64 (72)
T cd04883 3 QIEVRVPDRPGQLADIAAIFKDRGVNIVSVLVYPSKEEDNKILVFRVQTMNPRPIIEDLRRA 64 (72)
T ss_pred EEEEEECCCCCHHHHHHHHHHHcCCCEEEEEEeccCCCCeEEEEEEEecCCHHHHHHHHHHC
Confidence 35567899999999999999999999999998877677899999999876666888888764
|
This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains. |
| >PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00038 Score=72.70 Aligned_cols=79 Identities=15% Similarity=0.283 Sum_probs=66.3
Q ss_pred ceeeecCCeEEEEecC-hhHHHHHHHHHcCCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEcCCCCccccccc
Q 006864 223 VGVSLVGKTLAVMGFG-KVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIF 301 (628)
Q Consensus 223 ~g~~l~GktiGIIGlG-~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~sl~ell~~aDvV~l~~Plt~~t~~li 301 (628)
.+.++.||++.|||-| .+|+.+|..|...|+.|..++.+. -+|.+.+++||+|+.++. ..+++
T Consensus 151 ~~i~l~Gk~vvViGrS~~VG~Pla~lL~~~~AtVti~hs~T------------~~l~~~~~~ADIvV~AvG----kp~~i 214 (281)
T PRK14183 151 YEIDVKGKDVCVVGASNIVGKPMAALLLNANATVDICHIFT------------KDLKAHTKKADIVIVGVG----KPNLI 214 (281)
T ss_pred cCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC------------cCHHHHHhhCCEEEEecC----ccccc
Confidence 4679999999999999 899999999999999998876432 147788999999999997 34567
Q ss_pred cHHHHhcCCCCcEEEEcCC
Q 006864 302 NDETFAKMKKGVRIVNVAR 320 (628)
Q Consensus 302 ~~~~l~~mk~gailIN~aR 320 (628)
..+.+ |+|+++||++-
T Consensus 215 ~~~~v---k~gavvIDvGi 230 (281)
T PRK14183 215 TEDMV---KEGAIVIDIGI 230 (281)
T ss_pred CHHHc---CCCcEEEEeec
Confidence 76655 89999999983
|
|
| >PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.00042 Score=74.71 Aligned_cols=93 Identities=20% Similarity=0.249 Sum_probs=72.4
Q ss_pred HHHHHHHHHcCCCEEEEECCCCC------hhHHHHcCCccc-CHHHHhccCCEEEEcCCCCccccccccHHHHhcCCCCc
Q 006864 241 GSEVARRAKGLGMNVIAHDPYAP------ADKARAVGVELV-SFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGV 313 (628)
Q Consensus 241 G~~vA~~l~~~G~~V~~~d~~~~------~~~a~~~g~~~~-sl~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~ga 313 (628)
|..+|.+|...|++|++||++.. .+.....|+... +..+++++||+|++++|....++.++ ......+++++
T Consensus 32 G~~MA~~La~aG~~V~v~Dr~~~~l~~~~~~~l~~~Gi~~asd~~eaa~~ADvVIlaVP~~~~v~~Vl-~~L~~~L~~g~ 110 (342)
T PRK12557 32 GSRMAIEFAEAGHDVVLAEPNRSILSEELWKKVEDAGVKVVSDDAEAAKHGEIHILFTPFGKKTVEIA-KNILPHLPENA 110 (342)
T ss_pred HHHHHHHHHhCCCeEEEEECCHHHhhHHHHHHHHHCCCEEeCCHHHHHhCCCEEEEECCCcHHHHHHH-HHHHhhCCCCC
Confidence 78999999999999999998753 123445676544 78889999999999999554366666 46677889999
Q ss_pred EEEEcCCCchhcH-HHHHHHHh
Q 006864 314 RIVNVARGGVIDE-EALVRALD 334 (628)
Q Consensus 314 ilIN~aRg~~vde-~aL~~aL~ 334 (628)
+|||++.+..... +.+.+.+.
T Consensus 111 IVId~ST~~~~~~s~~l~~~l~ 132 (342)
T PRK12557 111 VICNTCTVSPVVLYYSLEGELR 132 (342)
T ss_pred EEEEecCCCHHHHHHHHHHHhc
Confidence 9999999887765 66667664
|
|
| >PRK14982 acyl-ACP reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.0012 Score=71.13 Aligned_cols=98 Identities=23% Similarity=0.372 Sum_probs=71.6
Q ss_pred ceeeecCCeEEEEec-ChhHHHHHHHHHc-CC-CEEEEECCCCCh--hHHHHcC-CcccCHHHHhccCCEEEEcCCCCcc
Q 006864 223 VGVSLVGKTLAVMGF-GKVGSEVARRAKG-LG-MNVIAHDPYAPA--DKARAVG-VELVSFDQALATADFISLHMPLNPT 296 (628)
Q Consensus 223 ~g~~l~GktiGIIGl-G~IG~~vA~~l~~-~G-~~V~~~d~~~~~--~~a~~~g-~~~~sl~ell~~aDvV~l~~Plt~~ 296 (628)
.+.++.||++.|+|. |.||+.+++.|.. .| .+++.+++.... ..+.+.+ ....++++.+.++|+|+.+.-..
T Consensus 149 lg~~l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl~~La~el~~~~i~~l~~~l~~aDiVv~~ts~~-- 226 (340)
T PRK14982 149 LGIDLSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQERLQELQAELGGGKILSLEEALPEADIVVWVASMP-- 226 (340)
T ss_pred hccCcCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHHHHHHHHhccccHHhHHHHHccCCEEEECCcCC--
Confidence 456799999999998 8999999999974 56 488888876421 1122222 23447889999999998766422
Q ss_pred ccc-cccHHHHhcCCCCcEEEEcCCCchhcH
Q 006864 297 TSK-IFNDETFAKMKKGVRIVNVARGGVIDE 326 (628)
Q Consensus 297 t~~-li~~~~l~~mk~gailIN~aRg~~vde 326 (628)
.. .++.+. ++++.++||.|+..=||.
T Consensus 227 -~~~~I~~~~---l~~~~~viDiAvPRDVd~ 253 (340)
T PRK14982 227 -KGVEIDPET---LKKPCLMIDGGYPKNLDT 253 (340)
T ss_pred -cCCcCCHHH---hCCCeEEEEecCCCCCCc
Confidence 34 377754 489999999999876664
|
|
| >PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00058 Score=71.60 Aligned_cols=78 Identities=15% Similarity=0.214 Sum_probs=65.6
Q ss_pred ceeeecCCeEEEEecCh-hHHHHHHHHHcCCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEcCCCCccccccc
Q 006864 223 VGVSLVGKTLAVMGFGK-VGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIF 301 (628)
Q Consensus 223 ~g~~l~GktiGIIGlG~-IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~sl~ell~~aDvV~l~~Plt~~t~~li 301 (628)
.+.++.||++.|||-+. +|+.+|..|...|+.|..++... .+|.+.+++||+|+.++.. .+++
T Consensus 153 y~i~l~GK~vvViGrS~iVGkPla~lL~~~~ATVtichs~T------------~~L~~~~~~ADIvV~AvGk----p~~i 216 (288)
T PRK14171 153 YEPNLTGKNVVIIGRSNIVGKPLSALLLKENCSVTICHSKT------------HNLSSITSKADIVVAAIGS----PLKL 216 (288)
T ss_pred hCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC------------CCHHHHHhhCCEEEEccCC----CCcc
Confidence 46789999999999885 69999999999999999876432 2578899999999999972 3677
Q ss_pred cHHHHhcCCCCcEEEEcC
Q 006864 302 NDETFAKMKKGVRIVNVA 319 (628)
Q Consensus 302 ~~~~l~~mk~gailIN~a 319 (628)
..+.+ |+|+++||++
T Consensus 217 ~~~~v---k~GavVIDvG 231 (288)
T PRK14171 217 TAEYF---NPESIVIDVG 231 (288)
T ss_pred CHHHc---CCCCEEEEee
Confidence 76655 8999999998
|
|
| >cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.00033 Score=55.99 Aligned_cols=59 Identities=14% Similarity=0.314 Sum_probs=49.2
Q ss_pred EEEeccCCCCchhhHHhhhhcCCccccceEEeeeecCccEEEEEEeCCCCCHHHHHHHhcc
Q 006864 561 ILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDEEPNQDSLKEIGKV 621 (628)
Q Consensus 561 Llv~~~D~PGvIa~V~~iL~~~~INIa~m~v~R~~~gg~Al~~i~vD~~~~~~~l~~L~~l 621 (628)
+-+..+|+||.++++.++|+++|+||.++........+.+...+.++. .+.+++.|++.
T Consensus 2 i~v~~~d~pG~L~~i~~~l~~~~~nI~~i~~~~~~~~~~~~v~~~ve~--~~~~~~~L~~~ 60 (65)
T cd04882 2 LAVEVPDKPGGLHEILQILSEEGINIEYMYAFVEKKGGKALLIFRTED--IEKAIEVLQER 60 (65)
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCChhheEEEccCCCCeEEEEEEeCC--HHHHHHHHHHC
Confidence 445779999999999999999999999998876554578888999987 66788887763
|
Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains. |
| >PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.00022 Score=60.15 Aligned_cols=67 Identities=12% Similarity=0.318 Sum_probs=51.7
Q ss_pred EEEeccCCCCchhhHHhhhhcCCccccceEEeeeecCccEEEEEEeCCCCCH---HHHHHHhcccCcccc
Q 006864 561 ILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDEEPNQ---DSLKEIGKVHFVARI 627 (628)
Q Consensus 561 Llv~~~D~PGvIa~V~~iL~~~~INIa~m~v~R~~~gg~Al~~i~vD~~~~~---~~l~~L~~l~~v~~v 627 (628)
|-+...|+||+++.|++.+++.++||..++.....+++.+.+.+.++-.-.+ .++++|+++|+|.+|
T Consensus 9 l~i~~~dr~GlL~dI~~~i~~~~~nI~~i~~~~~~~~~~~~~~l~v~V~d~~~L~~ii~~L~~i~~V~~V 78 (80)
T PF13291_consen 9 LRIEAEDRPGLLADITSVISENGVNIRSINARTNKDDGTARITLTVEVKDLEHLNQIIRKLRQIPGVISV 78 (80)
T ss_dssp EEEEEE--TTHHHHHHHHHHCSSSEEEEEEEEE--ETTEEEEEEEEEESSHHHHHHHHHHHCTSTTEEEE
T ss_pred EEEEEEcCCCHHHHHHHHHHHCCCCeEEEEeEEeccCCEEEEEEEEEECCHHHHHHHHHHHHCCCCeeEE
Confidence 3456789999999999999999999999999876556777777766543222 689999999999876
|
|
| >PRK00258 aroE shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.00042 Score=72.47 Aligned_cols=96 Identities=19% Similarity=0.258 Sum_probs=63.0
Q ss_pred eeecCCeEEEEecChhHHHHHHHHHcCC-CEEEEECCCCChh--HHHHcC----Ccc-cCHHHHhccCCEEEEcCCCCcc
Q 006864 225 VSLVGKTLAVMGFGKVGSEVARRAKGLG-MNVIAHDPYAPAD--KARAVG----VEL-VSFDQALATADFISLHMPLNPT 296 (628)
Q Consensus 225 ~~l~GktiGIIGlG~IG~~vA~~l~~~G-~~V~~~d~~~~~~--~a~~~g----~~~-~sl~ell~~aDvV~l~~Plt~~ 296 (628)
..+.+|++.|+|.|.+|++++..|..+| .+|.+++++.... .+...+ +.. .++.+.+.++|+|+.++|..-.
T Consensus 119 ~~~~~k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~DivInaTp~g~~ 198 (278)
T PRK00258 119 VDLKGKRILILGAGGAARAVILPLLDLGVAEITIVNRTVERAEELAKLFGALGKAELDLELQEELADFDLIINATSAGMS 198 (278)
T ss_pred CCCCCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhccceeecccchhccccCCEEEECCcCCCC
Confidence 4678899999999999999999999999 7999999875221 122222 111 2345777899999999996532
Q ss_pred ccccccHHHHhcCCCCcEEEEcCC
Q 006864 297 TSKIFNDETFAKMKKGVRIVNVAR 320 (628)
Q Consensus 297 t~~li~~~~l~~mk~gailIN~aR 320 (628)
...-...-.+..++++.+++|+.-
T Consensus 199 ~~~~~~~~~~~~l~~~~~v~DivY 222 (278)
T PRK00258 199 GELPLPPLPLSLLRPGTIVYDMIY 222 (278)
T ss_pred CCCCCCCCCHHHcCCCCEEEEeec
Confidence 110001112234566666666643
|
|
| >PRK06249 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0035 Score=66.61 Aligned_cols=108 Identities=12% Similarity=0.162 Sum_probs=74.2
Q ss_pred CeEEEEecChhHHHHHHHHHcCCCEEEEECCCCChhHHHHcCCcc--------------cCHHHHhccCCEEEEcCCCCc
Q 006864 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVEL--------------VSFDQALATADFISLHMPLNP 295 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~--------------~sl~ell~~aDvV~l~~Plt~ 295 (628)
++|+|||.|.||..+|.+|...|.+|.++.+.. .+.....|... .+..+.+..+|+|++++|..+
T Consensus 6 m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vilavK~~~ 84 (313)
T PRK06249 6 PRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSD-YEAVRENGLQVDSVHGDFHLPPVQAYRSAEDMPPCDWVLVGLKTTA 84 (313)
T ss_pred cEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC-HHHHHhCCeEEEeCCCCeeecCceEEcchhhcCCCCEEEEEecCCC
Confidence 689999999999999999999999999988764 33333333211 112234678999999998443
Q ss_pred cccccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhCCCeeEE
Q 006864 296 TTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQA 341 (628)
Q Consensus 296 ~t~~li~~~~l~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~ga 341 (628)
+...+ +..-..++++..++...-| +-.++.|.+.+...++.++
T Consensus 85 -~~~~~-~~l~~~~~~~~~iv~lqNG-~~~~e~l~~~~~~~~v~~g 127 (313)
T PRK06249 85 -NALLA-PLIPQVAAPDAKVLLLQNG-LGVEEQLREILPAEHLLGG 127 (313)
T ss_pred -hHhHH-HHHhhhcCCCCEEEEecCC-CCcHHHHHHHCCCCcEEEE
Confidence 33322 2333346778888887655 5567778888877776654
|
|
| >PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.00061 Score=71.77 Aligned_cols=81 Identities=19% Similarity=0.213 Sum_probs=67.1
Q ss_pred ceeeecCCeEEEEecCh-hHHHHHHHHHcCCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEcCCCCccccccc
Q 006864 223 VGVSLVGKTLAVMGFGK-VGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIF 301 (628)
Q Consensus 223 ~g~~l~GktiGIIGlG~-IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~sl~ell~~aDvV~l~~Plt~~t~~li 301 (628)
.+.++.||++.|||-+. +|+.+|..|...|+.|..+.... .++.+.+++||+|+.+++. .+++
T Consensus 152 ~~i~l~Gk~vvVIGrS~iVGkPla~lL~~~~atVtv~hs~T------------~~l~~~~~~ADIvIsAvGk----p~~i 215 (297)
T PRK14186 152 QQIDIAGKKAVVVGRSILVGKPLALMLLAANATVTIAHSRT------------QDLASITREADILVAAAGR----PNLI 215 (297)
T ss_pred hCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCCC------------CCHHHHHhhCCEEEEccCC----cCcc
Confidence 46799999999999875 69999999999999999886542 2578889999999999983 3567
Q ss_pred cHHHHhcCCCCcEEEEcCCCc
Q 006864 302 NDETFAKMKKGVRIVNVARGG 322 (628)
Q Consensus 302 ~~~~l~~mk~gailIN~aRg~ 322 (628)
..+.+ |+|+++||++--.
T Consensus 216 ~~~~i---k~gavVIDvGin~ 233 (297)
T PRK14186 216 GAEMV---KPGAVVVDVGIHR 233 (297)
T ss_pred CHHHc---CCCCEEEEecccc
Confidence 76655 8999999998444
|
|
| >PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.00071 Score=70.90 Aligned_cols=82 Identities=17% Similarity=0.276 Sum_probs=68.2
Q ss_pred cceeeecCCeEEEEecCh-hHHHHHHHHHcCCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEcCCCCcccccc
Q 006864 222 YVGVSLVGKTLAVMGFGK-VGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKI 300 (628)
Q Consensus 222 ~~g~~l~GktiGIIGlG~-IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~sl~ell~~aDvV~l~~Plt~~t~~l 300 (628)
+.+.++.||++.|||-+. +|+.+|..|...|+.|..++... .++.+.+++||+|+.++. ..++
T Consensus 151 ~~~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~atVt~chs~t------------~~l~~~~~~ADIvI~AvG----~p~~ 214 (284)
T PRK14190 151 EYNIDISGKHVVVVGRSNIVGKPVGQLLLNENATVTYCHSKT------------KNLAELTKQADILIVAVG----KPKL 214 (284)
T ss_pred HcCCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEEeCCc------------hhHHHHHHhCCEEEEecC----CCCc
Confidence 346789999999999874 79999999999999999886432 257889999999999996 3457
Q ss_pred ccHHHHhcCCCCcEEEEcCCCc
Q 006864 301 FNDETFAKMKKGVRIVNVARGG 322 (628)
Q Consensus 301 i~~~~l~~mk~gailIN~aRg~ 322 (628)
++.+.+ |+|+++||++.-.
T Consensus 215 i~~~~i---k~gavVIDvGi~~ 233 (284)
T PRK14190 215 ITADMV---KEGAVVIDVGVNR 233 (284)
T ss_pred CCHHHc---CCCCEEEEeeccc
Confidence 887776 8999999998554
|
|
| >PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.00066 Score=71.04 Aligned_cols=79 Identities=16% Similarity=0.302 Sum_probs=66.1
Q ss_pred ceeeecCCeEEEEecCh-hHHHHHHHHHcCCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEcCCCCccccccc
Q 006864 223 VGVSLVGKTLAVMGFGK-VGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIF 301 (628)
Q Consensus 223 ~g~~l~GktiGIIGlG~-IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~sl~ell~~aDvV~l~~Plt~~t~~li 301 (628)
.+.++.||++.|||-+. +|+.+|..|...|+.|..+.... .+|.+.+++||+|+.+++. .+++
T Consensus 150 ~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~atVtichs~T------------~~l~~~~~~ADIvI~AvG~----p~~i 213 (282)
T PRK14169 150 YDIDVAGKRVVIVGRSNIVGRPLAGLMVNHDATVTIAHSKT------------RNLKQLTKEADILVVAVGV----PHFI 213 (282)
T ss_pred hCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEECCCC------------CCHHHHHhhCCEEEEccCC----cCcc
Confidence 46789999999999885 69999999999999999886542 1578889999999999983 4567
Q ss_pred cHHHHhcCCCCcEEEEcCC
Q 006864 302 NDETFAKMKKGVRIVNVAR 320 (628)
Q Consensus 302 ~~~~l~~mk~gailIN~aR 320 (628)
..+. .|+|+++||++-
T Consensus 214 ~~~~---vk~GavVIDvGi 229 (282)
T PRK14169 214 GADA---VKPGAVVIDVGI 229 (282)
T ss_pred CHHH---cCCCcEEEEeec
Confidence 7765 589999999984
|
|
| >cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.00048 Score=55.99 Aligned_cols=57 Identities=21% Similarity=0.385 Sum_probs=46.0
Q ss_pred EEEeccCCCCchhhHHhhhhcCCccccceEEeeeecCccEEEEEEeCCCCCHHHHHHHhcc
Q 006864 561 ILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDEEPNQDSLKEIGKV 621 (628)
Q Consensus 561 Llv~~~D~PGvIa~V~~iL~~~~INIa~m~v~R~~~gg~Al~~i~vD~~~~~~~l~~L~~l 621 (628)
+.+..+|+||.+++|+++|+++||||.+|.++.... .+++.+.+|. ++.+.+.|++.
T Consensus 4 i~v~v~d~pG~La~v~~~l~~~~inI~~i~~~~~~~--~~~~rl~~~~--~~~~~~~L~~~ 60 (66)
T cd04908 4 LSVFLENKPGRLAAVTEILSEAGINIRALSIADTSE--FGILRLIVSD--PDKAKEALKEA 60 (66)
T ss_pred EEEEEcCCCChHHHHHHHHHHCCCCEEEEEEEecCC--CCEEEEEECC--HHHHHHHHHHC
Confidence 566789999999999999999999999999876433 5888888855 45677777653
|
Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains. |
| >cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1 | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.00064 Score=69.20 Aligned_cols=106 Identities=26% Similarity=0.358 Sum_probs=65.1
Q ss_pred eeecCCeEEEEecChhHHHHHHHHHcCCCEEEEE-CC-------CC-ChhHH----HHcC-------CcccCHHHHh-cc
Q 006864 225 VSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAH-DP-------YA-PADKA----RAVG-------VELVSFDQAL-AT 283 (628)
Q Consensus 225 ~~l~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~-d~-------~~-~~~~a----~~~g-------~~~~sl~ell-~~ 283 (628)
.++.|+++.|.|+|++|+.+|+.|..+|++|++. |. .- +.+.. ...| ...++.++++ .+
T Consensus 27 ~~l~~~~v~I~G~G~VG~~~a~~L~~~g~~vv~v~D~~g~~~~~~Gld~~~l~~~~~~~g~l~~~~~~~~~~~~~i~~~~ 106 (227)
T cd01076 27 IGLAGARVAIQGFGNVGSHAARFLHEAGAKVVAVSDSDGTIYNPDGLDVPALLAYKKEHGSVLGFPGAERITNEELLELD 106 (227)
T ss_pred CCccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCCcccCCCceecCCccceeec
Confidence 5689999999999999999999999999999954 43 11 11111 1112 1122333433 26
Q ss_pred CCEEEEcCCCCccccccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhCCCe
Q 006864 284 ADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVV 338 (628)
Q Consensus 284 aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~~vde~aL~~aL~~g~i 338 (628)
||+++-|.+ .+.++.+...+++ -.+|+-.+-+.+ ..++ .+.|+++.+
T Consensus 107 ~Dvlip~a~-----~~~i~~~~~~~l~-a~~I~egAN~~~-t~~a-~~~L~~rGi 153 (227)
T cd01076 107 CDILIPAAL-----ENQITADNADRIK-AKIIVEAANGPT-TPEA-DEILHERGV 153 (227)
T ss_pred ccEEEecCc-----cCccCHHHHhhce-eeEEEeCCCCCC-CHHH-HHHHHHCCC
Confidence 788877764 4556777777776 335555555555 3333 455555444
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids |
| >PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ] | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.00075 Score=60.38 Aligned_cols=79 Identities=24% Similarity=0.304 Sum_probs=58.1
Q ss_pred hHHHHHHHHHcCCCEEEEECCCCChhHHHH----cCCccc-CHHHHhccCCEEEEcCCCCccccccccHHHHhcCCCCcE
Q 006864 240 VGSEVARRAKGLGMNVIAHDPYAPADKARA----VGVELV-SFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVR 314 (628)
Q Consensus 240 IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~----~g~~~~-sl~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gai 314 (628)
-+..+++.|+..|++|.+|||+.+...... .+++.. ++++.++.+|+|+++++ .++-+.+--.+....|+++.+
T Consensus 18 p~~~l~~~L~~~g~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vvl~t~-h~~f~~l~~~~~~~~~~~~~~ 96 (106)
T PF03720_consen 18 PALELIEELKERGAEVSVYDPYVDEEEIKELGKLEGVEVCDDLEEALKGADAVVLATD-HDEFRELDWEEIAKLMRKPPV 96 (106)
T ss_dssp HHHHHHHHHHHTT-EEEEE-TTSHHHHHHHHCHHHCEEEESSHHHHHTTESEEEESS---GGGGCCGHHHHHHHSCSSEE
T ss_pred HHHHHHHHHHHCCCEEEEECCccChHHHHhhCCccceEEecCHHHHhcCCCEEEEEec-CHHHhccCHHHHHHhcCCCCE
Confidence 356799999999999999999987665555 456655 79999999999999998 444444333455567889999
Q ss_pred EEEcC
Q 006864 315 IVNVA 319 (628)
Q Consensus 315 lIN~a 319 (628)
|+|+-
T Consensus 97 iiD~~ 101 (106)
T PF03720_consen 97 IIDGR 101 (106)
T ss_dssp EEESS
T ss_pred EEECc
Confidence 99973
|
The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B .... |
| >PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.00072 Score=57.08 Aligned_cols=70 Identities=13% Similarity=0.126 Sum_probs=58.1
Q ss_pred CcEEEEeccCCCCchhhHHhhhhcCCccccceEEeeeecCccEEEEEEeCCCC-CHHHHHHHhcccCcccc
Q 006864 558 GNLILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDEEP-NQDSLKEIGKVHFVARI 627 (628)
Q Consensus 558 ~~~Llv~~~D~PGvIa~V~~iL~~~~INIa~m~v~R~~~gg~Al~~i~vD~~~-~~~~l~~L~~l~~v~~v 627 (628)
.|.|-+...++||++++|+.++...|.||..|.++..+.++..-+.+.++++- -+.+.++|.++.+|.+|
T Consensus 3 ~~~lsi~v~n~pGVL~Ri~~lf~rRGfnI~sl~v~~t~~~~~sriti~v~~~~~i~ql~kQL~KL~dV~~V 73 (76)
T PRK11152 3 QHQLTIKARFRPEVLERVLRVVRHRGFQVCSMNMTQNTDAQNINIELTVASERPIDLLSSQLNKLVDVAHV 73 (76)
T ss_pred eEEEEEEEECCccHHHHHHHHHhcCCeeeeeEEeeecCCCCEEEEEEEECCCchHHHHHHHHhcCcCeEEE
Confidence 36777788899999999999999999999999999887777787777775432 33688889999988775
|
|
| >PRK11861 bifunctional prephenate dehydrogenase/3-phosphoshikimate 1-carboxyvinyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.30 E-value=9e-05 Score=86.79 Aligned_cols=176 Identities=16% Similarity=0.134 Sum_probs=109.1
Q ss_pred EEEcCCCCccccccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhCC--CeeE----EEeeccCCCCCCCCCccccC
Q 006864 287 ISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSG--VVAQ----AALDVFTEEPPAKDSKLVQH 360 (628)
Q Consensus 287 V~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~~vde~aL~~aL~~g--~i~g----a~lDV~~~EP~~~~~~L~~~ 360 (628)
|++|+|... +..++ ++....++++++|+|++.-+.--.++..+.|..+ ++.| ||-++.+.| .++..||+.
T Consensus 1 vila~Pv~~-~~~~~-~~~~~~~~~~~~vtDv~SvK~~i~~~~~~~l~~~~~~fvg~HPMaG~e~~G~~--~a~~~Lf~~ 76 (673)
T PRK11861 1 VLLAAPVAQ-TGPLL-ARIAPFLDASTIVTDAGSTKSDVVAAARAALGARIGQFVPGHPIAGRESSGVD--AALADLYVG 76 (673)
T ss_pred CEEEcCHHH-HHHHH-HHHhhhCCCCcEEEecCcccHHHHHHHHHhccccCCeEEecCCcCcCcchhhh--hhChhHhCC
Confidence 578999543 44444 3444668999999999998866555655555432 2333 344444433 356789999
Q ss_pred CcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCcccCCCCCcccccccc------cHHHHH---HHH-----hH
Q 006864 361 ENVTVTPHLGASTKEAQEGVAIEIAEAVVGALRGELSATAINAPMVPSEVLSELA------PYVVLA---KKL-----GR 426 (628)
Q Consensus 361 ~nvilTPHig~~T~ea~~~~~~~~~~~i~~~l~g~~~~~~vn~p~~~~~~~~~~~------p~~~lA---erl-----G~ 426 (628)
.++|+||.-... .++.+ .++++...+..... .+++++||++- |++-.. ..+ ..
T Consensus 77 ~~~il~p~~~~~-~~~~~-----~~~~l~~~~Ga~~~-------~~~~~~HD~~~A~iShlpH~~a~~l~~~~~~~~~~~ 143 (673)
T PRK11861 77 RNVVLCALPENA-PDALA-----RVEAMWRAARADVR-------AMSAEQHDRVFAAVSHLPHVLSFALVEQILGESDAE 143 (673)
T ss_pred CeEEEecCCCCC-HHHHH-----HHHHHHHHcCCEEE-------ECCHHHHHHHHHHHhhHHHHHHHHHHHHHhhccChh
Confidence 999999966443 23322 23333333322222 46677777755 332211 111 22
Q ss_pred HHHHHhcCCCCceEEEEEEeecCCCCCCCcccchHHHHHhhccccccCcccccchH
Q 006864 427 LAVQLVSGGSGIKSVKLIYRSARDPDDLDTRILRAMITKGIIEPISASFINLVNAD 482 (628)
Q Consensus 427 la~qL~~g~~~~~~v~i~~~Gs~a~~~~~~~~~~~a~l~GlL~~~~~~~vnlvNA~ 482 (628)
++.+|++| +|++++++..+++. +|.+....|+..+...|+.+..+...+.++.
T Consensus 144 ~~~~~a~~--gfrd~tRia~~~p~-lw~di~~~N~~~i~~~l~~~~~~l~~~~~~l 196 (673)
T PRK11861 144 LKFSYAAG--GFRDFTRIAASSPE-MWRDVCLANRAALLDELDAYTAVLARLRAAI 196 (673)
T ss_pred HHHHhccc--chhcccccccCCHH-HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
Confidence 23467777 89999999999998 9999999999877666665555444444443
|
|
| >cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.0015 Score=64.30 Aligned_cols=97 Identities=21% Similarity=0.106 Sum_probs=64.8
Q ss_pred eeeecCCeEEEEec-ChhHHHHHHHHHcCCCEEEEECCCCChh--HHHHc----CCc-----cc---CHHHHhccCCEEE
Q 006864 224 GVSLVGKTLAVMGF-GKVGSEVARRAKGLGMNVIAHDPYAPAD--KARAV----GVE-----LV---SFDQALATADFIS 288 (628)
Q Consensus 224 g~~l~GktiGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~~~~--~a~~~----g~~-----~~---sl~ell~~aDvV~ 288 (628)
|..+.|+++.|+|. |.+|+.+++.|...|.+|..+++..... ....+ +.. .. ++.+.++++|+|+
T Consensus 23 ~~~l~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~diVi 102 (194)
T cd01078 23 GKDLKGKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDLERAQKAADSLRARFGEGVGAVETSDDAARAAAIKGADVVF 102 (194)
T ss_pred CcCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhhcCCcEEEeeCCCHHHHHHHHhcCCEEE
Confidence 55678999999995 9999999999999999999998764211 11111 111 11 2457788999999
Q ss_pred EcCCCCccccccccHHHHhcCCCCcEEEEcCCCchh
Q 006864 289 LHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVI 324 (628)
Q Consensus 289 l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~~v 324 (628)
.+.|.... ..+.... ..+++.+++|+.+..-+
T Consensus 103 ~at~~g~~--~~~~~~~--~~~~~~vv~D~~~~~~~ 134 (194)
T cd01078 103 AAGAAGVE--LLEKLAW--APKPLAVAADVNAVPPV 134 (194)
T ss_pred ECCCCCce--echhhhc--ccCceeEEEEccCCCCC
Confidence 99885543 1111111 24557788888766544
|
Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo |
| >cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.00036 Score=57.29 Aligned_cols=68 Identities=21% Similarity=0.300 Sum_probs=52.1
Q ss_pred EEEEeccCCCCchhhHHhhhhcCCccccceEEeeeecCccEEEEEEeCCC---CCHHHHHHHhcccCcccc
Q 006864 560 LILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDEE---PNQDSLKEIGKVHFVARI 627 (628)
Q Consensus 560 ~Llv~~~D~PGvIa~V~~iL~~~~INIa~m~v~R~~~gg~Al~~i~vD~~---~~~~~l~~L~~l~~v~~v 627 (628)
.|-+.-.|+||.++.+++.|+++++||..|.......++.+.+.+.++.. .-++++++|+++++|.++
T Consensus 2 yl~i~~~d~~g~l~~i~~~l~~~~i~I~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~i~~L~~~~~V~~~ 72 (79)
T cd04881 2 YLRLTVKDKPGVLAKITGILAEHGISIESVIQKEADGGETAPVVIVTHETSEAALNAALAEIEALDAVQGV 72 (79)
T ss_pred EEEEEeCCCCcHHHHHHHHHHHcCCCeEEEEEcccCCCCceeEEEEEccCCHHHHHHHHHHHHcCccccCC
Confidence 35566789999999999999999999999987543334777777766533 223688999999988764
|
The ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) encoded by the hom gene of Bacillus subtilis and other related sequences. HSDH reduces aspartate semi-aldehyde to the amino acid homoserine, one that is required for the biosynthesis of Met, Thr, and Ile from Asp. Neither the enzyme nor the aspartate pathway is found in the animal kingdom. This mostly bacterial HSDH group has a C-terminal ACT domain and is believed to be involved in enzyme regulation. A C-terminal deletion in the Corynebacterium glutamicum HSDH abolished allosteric inhibition by L-threonine. Members of this CD belong to the superfamily of ACT regulatory domains. |
| >PRK06737 acetolactate synthase 1 regulatory subunit; Validated | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.00051 Score=57.96 Aligned_cols=69 Identities=9% Similarity=0.138 Sum_probs=55.1
Q ss_pred cEEEEeccCCCCchhhHHhhhhcCCccccceEEeeeecCccEEEEEEe--CCCCCHHHHHHHhcccCcccc
Q 006864 559 NLILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGV--DEEPNQDSLKEIGKVHFVARI 627 (628)
Q Consensus 559 ~~Llv~~~D~PGvIa~V~~iL~~~~INIa~m~v~R~~~gg~Al~~i~v--D~~~~~~~l~~L~~l~~v~~v 627 (628)
|++-+...|+||++.+|++++...|+||..+.++..+..+..=|.|.+ |+..-+.+.++|.++.+|.+|
T Consensus 3 ~tisi~v~n~pGVL~Ri~~lf~rRgfNI~Sl~vg~te~~~~sriti~~~~~~~~i~qi~kQL~KLidV~~V 73 (76)
T PRK06737 3 HTFSLVIHNDPSVLLRISGIFARRGYYISSLNLNERDTSGVSEMKLTAVCTENEATLLVSQLKKLINVLQV 73 (76)
T ss_pred EEEEEEEecCCCHHHHHHHHHhccCcceEEEEecccCCCCeeEEEEEEECCHHHHHHHHHHHhCCcCEEEE
Confidence 677778899999999999999999999999999987776766555553 333334678888888888775
|
|
| >PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+) | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0009 Score=70.55 Aligned_cols=79 Identities=18% Similarity=0.245 Sum_probs=66.7
Q ss_pred ceeeecCCeEEEEecCh-hHHHHHHHHHcCCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEcCCCCccccccc
Q 006864 223 VGVSLVGKTLAVMGFGK-VGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIF 301 (628)
Q Consensus 223 ~g~~l~GktiGIIGlG~-IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~sl~ell~~aDvV~l~~Plt~~t~~li 301 (628)
.+.++.||++.|||-+. +|+.+|..|...|+.|..++... -++++.+++||+|+.++.. .+++
T Consensus 161 ~~i~l~Gk~vvVIGRS~iVGkPla~lL~~~~ATVtvchs~T------------~nl~~~~~~ADIvv~AvGk----~~~i 224 (299)
T PLN02516 161 SGIPIKGKKAVVVGRSNIVGLPVSLLLLKADATVTVVHSRT------------PDPESIVREADIVIAAAGQ----AMMI 224 (299)
T ss_pred hCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCCC------------CCHHHHHhhCCEEEEcCCC----cCcc
Confidence 46789999999999986 69999999999999999987542 2578899999999999863 3677
Q ss_pred cHHHHhcCCCCcEEEEcCC
Q 006864 302 NDETFAKMKKGVRIVNVAR 320 (628)
Q Consensus 302 ~~~~l~~mk~gailIN~aR 320 (628)
..+.+ |+|+++||++-
T Consensus 225 ~~~~v---k~gavVIDvGi 240 (299)
T PLN02516 225 KGDWI---KPGAAVIDVGT 240 (299)
T ss_pred CHHHc---CCCCEEEEeec
Confidence 77655 89999999984
|
|
| >PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.00099 Score=69.71 Aligned_cols=78 Identities=22% Similarity=0.306 Sum_probs=66.1
Q ss_pred ceeeecCCeEEEEecCh-hHHHHHHHHHcCCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEcCCCCccccccc
Q 006864 223 VGVSLVGKTLAVMGFGK-VGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIF 301 (628)
Q Consensus 223 ~g~~l~GktiGIIGlG~-IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~sl~ell~~aDvV~l~~Plt~~t~~li 301 (628)
.+.++.||++.|||-+. +|+.+|..|...|+.|..++... -++.+..++||+|+.++. -.+++
T Consensus 151 y~i~l~Gk~vvVvGrS~iVGkPla~lL~~~~atVt~chs~T------------~nl~~~~~~ADIvIsAvG----kp~~i 214 (282)
T PRK14166 151 YEIDLEGKDAVIIGASNIVGRPMATMLLNAGATVSVCHIKT------------KDLSLYTRQADLIIVAAG----CVNLL 214 (282)
T ss_pred hCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC------------CCHHHHHhhCCEEEEcCC----CcCcc
Confidence 46789999999999885 69999999999999999887542 248888999999999997 34677
Q ss_pred cHHHHhcCCCCcEEEEcC
Q 006864 302 NDETFAKMKKGVRIVNVA 319 (628)
Q Consensus 302 ~~~~l~~mk~gailIN~a 319 (628)
..+.+ |+|+++||++
T Consensus 215 ~~~~v---k~GavVIDvG 229 (282)
T PRK14166 215 RSDMV---KEGVIVVDVG 229 (282)
T ss_pred CHHHc---CCCCEEEEec
Confidence 77654 8999999998
|
|
| >PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0008 Score=59.06 Aligned_cols=71 Identities=13% Similarity=0.212 Sum_probs=56.9
Q ss_pred CCcEEEEeccCCCCchhhHHhhhhcCCccccceEEeeeecCccEEEEEEeCC-CCCHHHHHHHhcccCcccc
Q 006864 557 EGNLILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDE-EPNQDSLKEIGKVHFVARI 627 (628)
Q Consensus 557 ~~~~Llv~~~D~PGvIa~V~~iL~~~~INIa~m~v~R~~~gg~Al~~i~vD~-~~~~~~l~~L~~l~~v~~v 627 (628)
..++|-+...|+||++++|+.+++..|+||..+.++..+..+..=|.|-+.+ ..=+.+.++|.++.+|.+|
T Consensus 7 ~~~tisvlv~N~pGVL~RIaglFsRRgyNIeSLtvg~te~~~iSRmtivv~~~~~i~Qi~kQL~KLidVikV 78 (96)
T PRK08178 7 DNVILELTVRNHPGVMSHVCGLFARRAFNVEGILCLPIQDGDKSRIWLLVNDDQRLEQMISQIEKLEDVLKV 78 (96)
T ss_pred CCEEEEEEEECCcCHHHHHHHHHhcCCcCeeeEEEeecCCCCceEEEEEEcCchHHHHHHHHHhCCcCEEEE
Confidence 4578888889999999999999999999999999999888777766666653 2223577778888887765
|
|
| >PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.00087 Score=71.67 Aligned_cols=79 Identities=19% Similarity=0.296 Sum_probs=66.1
Q ss_pred ceeeecCCeEEEEecCh-hHHHHHHHHHcCCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEcCCCCccccccc
Q 006864 223 VGVSLVGKTLAVMGFGK-VGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIF 301 (628)
Q Consensus 223 ~g~~l~GktiGIIGlG~-IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~sl~ell~~aDvV~l~~Plt~~t~~li 301 (628)
.+.++.||++.|||-+. +|+.+|..|...|+.|..+.... -++.+..++||+|+.++.. .+++
T Consensus 208 ~~i~l~GK~vvVIGRS~iVGkPla~LL~~~~ATVTicHs~T------------~nl~~~~~~ADIvIsAvGk----p~~v 271 (345)
T PLN02897 208 SGVEIAGKNAVVIGRSNIVGLPMSLLLQRHDATVSTVHAFT------------KDPEQITRKADIVIAAAGI----PNLV 271 (345)
T ss_pred hCCCCCCCEEEEECCCccccHHHHHHHHHCCCEEEEEcCCC------------CCHHHHHhhCCEEEEccCC----cCcc
Confidence 46789999999999886 69999999999999999876542 2578889999999999973 4577
Q ss_pred cHHHHhcCCCCcEEEEcCC
Q 006864 302 NDETFAKMKKGVRIVNVAR 320 (628)
Q Consensus 302 ~~~~l~~mk~gailIN~aR 320 (628)
..+.+ |+|+++||++-
T Consensus 272 ~~d~v---k~GavVIDVGi 287 (345)
T PLN02897 272 RGSWL---KPGAVVIDVGT 287 (345)
T ss_pred CHHHc---CCCCEEEEccc
Confidence 76655 89999999984
|
|
| >PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0011 Score=69.51 Aligned_cols=79 Identities=15% Similarity=0.256 Sum_probs=66.2
Q ss_pred ceeeecCCeEEEEecCh-hHHHHHHHHHcCCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEcCCCCccccccc
Q 006864 223 VGVSLVGKTLAVMGFGK-VGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIF 301 (628)
Q Consensus 223 ~g~~l~GktiGIIGlG~-IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~sl~ell~~aDvV~l~~Plt~~t~~li 301 (628)
.+.++.||++.|||-+. +|+.+|..|...|+.|..++... -++.+..++||+|+.++. ..+++
T Consensus 153 y~i~l~Gk~vvViGrS~iVGkPla~lL~~~~atVt~chs~T------------~~l~~~~~~ADIvIsAvG----k~~~i 216 (284)
T PRK14177 153 YGIDVTGKNAVVVGRSPILGKPMAMLLTEMNATVTLCHSKT------------QNLPSIVRQADIIVGAVG----KPEFI 216 (284)
T ss_pred hCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC------------CCHHHHHhhCCEEEEeCC----CcCcc
Confidence 46789999999999875 69999999999999999987542 157788999999999997 34567
Q ss_pred cHHHHhcCCCCcEEEEcCC
Q 006864 302 NDETFAKMKKGVRIVNVAR 320 (628)
Q Consensus 302 ~~~~l~~mk~gailIN~aR 320 (628)
..+.+ |+|+++||++-
T Consensus 217 ~~~~i---k~gavVIDvGi 232 (284)
T PRK14177 217 KADWI---SEGAVLLDAGY 232 (284)
T ss_pred CHHHc---CCCCEEEEecC
Confidence 76654 89999999984
|
|
| >cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2 | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.01 Score=61.41 Aligned_cols=108 Identities=19% Similarity=0.202 Sum_probs=74.3
Q ss_pred eeeecCCeEEEEecChhHHHHHHHHHcCCCEEEEE-C-------CCC-ChhHH------H-Hc------------CCccc
Q 006864 224 GVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAH-D-------PYA-PADKA------R-AV------------GVELV 275 (628)
Q Consensus 224 g~~l~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~-d-------~~~-~~~~a------~-~~------------g~~~~ 275 (628)
+.++.|+|+.|-|||++|+.+|+.|..+|++|++. | |.- +.+.. + +. +.+.+
T Consensus 33 ~~~l~g~~vaIqGfGnVG~~~a~~L~e~GakvvaVsD~~G~i~~~~Gld~~~l~~l~~~~~~~~~~v~~~~~~~~~a~~~ 112 (254)
T cd05313 33 NETLKGKRVAISGSGNVAQYAAEKLLELGAKVVTLSDSKGYVYDPDGFTGEKLAELKEIKEVRRGRVSEYAKKYGTAKYF 112 (254)
T ss_pred CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCceEECCCCCCHHHHHHHHHHHHhcCCcHHHHhhcCCCCEEe
Confidence 46789999999999999999999999999999953 3 331 11100 0 11 23344
Q ss_pred CHHHHhc-cCCEEEEcCCCCccccccccHHHHhcCC--CCcEEEEcCCCchhcHHHHHHHHhCCCe
Q 006864 276 SFDQALA-TADFISLHMPLNPTTSKIFNDETFAKMK--KGVRIVNVARGGVIDEEALVRALDSGVV 338 (628)
Q Consensus 276 sl~ell~-~aDvV~l~~Plt~~t~~li~~~~l~~mk--~gailIN~aRg~~vde~aL~~aL~~g~i 338 (628)
+-++++. +||+++-|. +.+.|+.+...+++ +-.+|+-.+-+.+-. ++ .+.|.+..|
T Consensus 113 ~~~~~~~~~~DIliPcA-----l~~~I~~~na~~i~~~~ak~I~EgAN~p~t~-~a-~~~L~~rGI 171 (254)
T cd05313 113 EGKKPWEVPCDIAFPCA-----TQNEVDAEDAKLLVKNGCKYVAEGANMPCTA-EA-IEVFRQAGV 171 (254)
T ss_pred CCcchhcCCCcEEEecc-----ccccCCHHHHHHHHHcCCEEEEeCCCCCCCH-HH-HHHHHHCCc
Confidence 5556554 799998875 57889998888884 345677777777655 43 455655544
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t |
| >PRK06444 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0012 Score=65.73 Aligned_cols=124 Identities=14% Similarity=0.172 Sum_probs=77.9
Q ss_pred CeEEEEec-ChhHHHHHHHHHcCCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEcCCCCccccccccHHHHhc
Q 006864 230 KTLAVMGF-GKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAK 308 (628)
Q Consensus 230 ktiGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~sl~ell~~aDvV~l~~Plt~~t~~li~~~~l~~ 308 (628)
.+++|||- |.+|+.+++.++..|+.|. +++||+|++|+|... +. +.++.
T Consensus 1 ~~~~iiG~~G~mG~~~~~~~~~~g~~v~------------------------~~~~DlVilavPv~~-~~-----~~i~~ 50 (197)
T PRK06444 1 MMEIIIGKNGRLGRVLCSILDDNGLGVY------------------------IKKADHAFLSVPIDA-AL-----NYIES 50 (197)
T ss_pred CEEEEEecCCcHHHHHHHHHHhCCCEEE------------------------ECCCCEEEEeCCHHH-HH-----HHHHH
Confidence 37899988 9999999999999999985 368999999999553 23 33333
Q ss_pred CCCCcEEEEcCCCchhcHHHHHHHHhCCCeeEEEeeccCCCCCC----CCCccccCCcEEEcCCCCCCcHHHHHHHHHHH
Q 006864 309 MKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEEPPA----KDSKLVQHENVTVTPHLGASTKEAQEGVAIEI 384 (628)
Q Consensus 309 mk~gailIN~aRg~~vde~aL~~aL~~g~i~ga~lDV~~~EP~~----~~~~L~~~~nvilTPHig~~T~ea~~~~~~~~ 384 (628)
+. .+++|+++-+.- +.++ . .++.+..|+. +...|+ .++++++. ....++
T Consensus 51 ~~--~~v~Dv~SvK~~----i~~~--~-------~~~vg~HPMfGp~~a~~~lf--~~~iv~~~--~~~~~~-------- 103 (197)
T PRK06444 51 YD--NNFVEISSVKWP----FKKY--S-------GKIVSIHPLFGPMSYNDGVH--RTVIFIND--ISRDNY-------- 103 (197)
T ss_pred hC--CeEEeccccCHH----HHHh--c-------CCEEecCCCCCCCcCccccc--ceEEEECC--CCCHHH--------
Confidence 33 379999987752 2222 1 2445555542 223444 46666543 222222
Q ss_pred HHHHHHHHcCCCCCCcccCCCCCccccccccc
Q 006864 385 AEAVVGALRGELSATAINAPMVPSEVLSELAP 416 (628)
Q Consensus 385 ~~~i~~~l~g~~~~~~vn~p~~~~~~~~~~~p 416 (628)
.+.+.++++|. +.-.++++++|++--
T Consensus 104 ~~~~~~l~~G~------~~~~~t~eeHD~~~A 129 (197)
T PRK06444 104 LNEINEMFRGY------HFVEMTADEHDLLMS 129 (197)
T ss_pred HHHHHHHHcCC------EEEEeCHHHHHHHHH
Confidence 23455556542 223678999988553
|
|
| >PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.00096 Score=71.69 Aligned_cols=79 Identities=19% Similarity=0.202 Sum_probs=66.3
Q ss_pred ceeeecCCeEEEEecCh-hHHHHHHHHHcCCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEcCCCCccccccc
Q 006864 223 VGVSLVGKTLAVMGFGK-VGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIF 301 (628)
Q Consensus 223 ~g~~l~GktiGIIGlG~-IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~sl~ell~~aDvV~l~~Plt~~t~~li 301 (628)
.+.++.||++.|||-+. +|+.+|..|...++.|..+.... -++.+.+++||+|+.++. ..+++
T Consensus 225 y~i~l~GK~vvVIGRS~iVGkPLa~LL~~~~ATVTicHs~T------------~nl~~~~r~ADIVIsAvG----kp~~i 288 (364)
T PLN02616 225 YNVEIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT------------KNPEEITREADIIISAVG----QPNMV 288 (364)
T ss_pred hCCCCCCCEEEEECCCccccHHHHHHHHHCCCeEEEeCCCC------------CCHHHHHhhCCEEEEcCC----CcCcC
Confidence 46789999999999875 69999999999999999886542 257888999999999997 34677
Q ss_pred cHHHHhcCCCCcEEEEcCC
Q 006864 302 NDETFAKMKKGVRIVNVAR 320 (628)
Q Consensus 302 ~~~~l~~mk~gailIN~aR 320 (628)
..+.+ |+|+++||++=
T Consensus 289 ~~d~v---K~GAvVIDVGI 304 (364)
T PLN02616 289 RGSWI---KPGAVVIDVGI 304 (364)
T ss_pred CHHHc---CCCCEEEeccc
Confidence 77655 89999999983
|
|
| >PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0011 Score=69.50 Aligned_cols=80 Identities=21% Similarity=0.292 Sum_probs=65.7
Q ss_pred ceeeecCCeEEEEecCh-hHHHHHHHHHcC----CCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEcCCCCccc
Q 006864 223 VGVSLVGKTLAVMGFGK-VGSEVARRAKGL----GMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTT 297 (628)
Q Consensus 223 ~g~~l~GktiGIIGlG~-IG~~vA~~l~~~----G~~V~~~d~~~~~~~a~~~g~~~~sl~ell~~aDvV~l~~Plt~~t 297 (628)
.+.++.||++.|||-+. +|+.+|..|... ++.|..+.... .++.+.+++||+|+.+++.
T Consensus 147 ~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~AtVtvchs~T------------~~l~~~~~~ADIvV~AvG~---- 210 (287)
T PRK14181 147 YEIPLHGRHVAIVGRSNIVGKPLAALLMQKHPDTNATVTLLHSQS------------ENLTEILKTADIIIAAIGV---- 210 (287)
T ss_pred hCCCCCCCEEEEECCCccchHHHHHHHHhCcCCCCCEEEEeCCCC------------CCHHHHHhhCCEEEEccCC----
Confidence 46789999999999885 699999999887 78998876532 2588889999999999973
Q ss_pred cccccHHHHhcCCCCcEEEEcCCC
Q 006864 298 SKIFNDETFAKMKKGVRIVNVARG 321 (628)
Q Consensus 298 ~~li~~~~l~~mk~gailIN~aRg 321 (628)
.+++..+.+ |+|+++||++--
T Consensus 211 p~~i~~~~i---k~GavVIDvGin 231 (287)
T PRK14181 211 PLFIKEEMI---AEKAVIVDVGTS 231 (287)
T ss_pred cCccCHHHc---CCCCEEEEeccc
Confidence 357777655 899999999843
|
|
| >PRK08577 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0023 Score=59.93 Aligned_cols=70 Identities=19% Similarity=0.242 Sum_probs=55.2
Q ss_pred CcEEEEeccCCCCchhhHHhhhhcCCccccceEEeeeecCccEE--EEEEeCCC--CCHHHHHHHhcccCcccc
Q 006864 558 GNLILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGI--MAIGVDEE--PNQDSLKEIGKVHFVARI 627 (628)
Q Consensus 558 ~~~Llv~~~D~PGvIa~V~~iL~~~~INIa~m~v~R~~~gg~Al--~~i~vD~~--~~~~~l~~L~~l~~v~~v 627 (628)
.+.+-+...|+||+++.|++.|+++++||.+++......++.+. +.+++++. .-.+++++|+++++|.+|
T Consensus 56 ~~~I~V~~~Dr~GvLa~I~~~l~~~~inI~~i~~~~~~~~~~~~i~l~vev~~~~~~l~~l~~~L~~l~~V~~V 129 (136)
T PRK08577 56 LVEIELVVEDRPGVLAKITGLLAEHGVDILATECEELKRGELAECVIIVDLSKSDIDLEELEEELKKLEEVKEV 129 (136)
T ss_pred EEEEEEEEcCCCCHHHHHHHHHHHCCCCEEEEEEEEecCCCEEEEEEEEEeCCchhhHHHHHHHHHcCCCEEEE
Confidence 35567788999999999999999999999999986655455454 44566653 234899999999999876
|
|
| >COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.00084 Score=70.29 Aligned_cols=126 Identities=25% Similarity=0.333 Sum_probs=87.2
Q ss_pred ecCCeEEEEecChhHHHHHHHHHcCCCEEEEECCCCChhHHHH--cCCc-------ccCHHHHhccCCEEEEcCCCC-cc
Q 006864 227 LVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARA--VGVE-------LVSFDQALATADFISLHMPLN-PT 296 (628)
Q Consensus 227 l~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~--~g~~-------~~sl~ell~~aDvV~l~~Plt-~~ 296 (628)
+...++.|||.|-+|..-|+.+.++|.+|...|.+.+..+..+ .+.+ ...+++.+.++|+|+-++=.. ..
T Consensus 166 V~~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~~rv~~~~st~~~iee~v~~aDlvIgaVLIpgak 245 (371)
T COG0686 166 VLPAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFGGRVHTLYSTPSNIEEAVKKADLVIGAVLIPGAK 245 (371)
T ss_pred CCCccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhCceeEEEEcCHHHHHHHhhhccEEEEEEEecCCC
Confidence 5567899999999999999999999999999987643222111 1211 124889999999998765322 23
Q ss_pred ccccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhCCCeeEEEeeccCCCCCCCCCccccCCcEE--EcCCCCC
Q 006864 297 TSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVT--VTPHLGA 371 (628)
Q Consensus 297 t~~li~~~~l~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~ga~lDV~~~EP~~~~~~L~~~~nvi--lTPHig~ 371 (628)
.-.++.++.+++||||++|||++ ++.|.+. -...|-.-++|-+..+-++ +-|.+=+
T Consensus 246 aPkLvt~e~vk~MkpGsVivDVA-------------iDqGGc~------Et~~~TTh~~PtY~~~gvvhY~VaNmPg 303 (371)
T COG0686 246 APKLVTREMVKQMKPGSVIVDVA-------------IDQGGCF------ETSHPTTHDDPTYEVDGVVHYGVANMPG 303 (371)
T ss_pred CceehhHHHHHhcCCCcEEEEEE-------------EcCCCce------eccccccCCCCceeecCEEEEecCCCCc
Confidence 45678899999999999999995 6666652 1223333456766655543 4444433
|
|
| >PRK13562 acetolactate synthase 1 regulatory subunit; Provisional | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.00076 Score=57.77 Aligned_cols=69 Identities=14% Similarity=0.191 Sum_probs=56.4
Q ss_pred cEEEEeccCCCCchhhHHhhhhcCCccccceEEeeeecCccEEEEEEeC-CCC--CHHHHHHHhcccCcccc
Q 006864 559 NLILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVD-EEP--NQDSLKEIGKVHFVARI 627 (628)
Q Consensus 559 ~~Llv~~~D~PGvIa~V~~iL~~~~INIa~m~v~R~~~gg~Al~~i~vD-~~~--~~~~l~~L~~l~~v~~v 627 (628)
++|-+...|+||++++|++++.+.|+||..+.++..+..+..=|.|.++ ... =+.+.++|+++.+|.+|
T Consensus 3 ~~isvlVeN~~GVL~Rit~lFsRRg~NI~SLtvg~Te~~~iSRmtivv~~~d~~~ieqI~kQL~KlidVikV 74 (84)
T PRK13562 3 RILKLQVADQVSTLNRITSAFVRLQYNIDTLHVTHSEQPGISNMEIQVDIQDDTSLHILIKKLKQQINVLTV 74 (84)
T ss_pred EEEEEEEECCCCHHHHHHHHHhccCcCeeeEEecccCCCCceEEEEEEeCCCHHHHHHHHHHHhCCccEEEE
Confidence 5677778899999999999999999999999999988888887777775 222 23677788888887765
|
|
| >PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.0012 Score=69.23 Aligned_cols=81 Identities=20% Similarity=0.290 Sum_probs=67.3
Q ss_pred ceeeecCCeEEEEecCh-hHHHHHHHHHcCCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEcCCCCccccccc
Q 006864 223 VGVSLVGKTLAVMGFGK-VGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIF 301 (628)
Q Consensus 223 ~g~~l~GktiGIIGlG~-IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~sl~ell~~aDvV~l~~Plt~~t~~li 301 (628)
.+.++.||++.|||-+. +|+.+|..|...|+.|..+.... -++.+.+++||+|+.++. ..+++
T Consensus 149 ~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~aTVtichs~T------------~~l~~~~~~ADIvIsAvG----kp~~i 212 (287)
T PRK14173 149 YGIPLAGKEVVVVGRSNIVGKPLAALLLREDATVTLAHSKT------------QDLPAVTRRADVLVVAVG----RPHLI 212 (287)
T ss_pred cCCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEeCCCC------------CCHHHHHhhCCEEEEecC----CcCcc
Confidence 46789999999999875 79999999999999999876542 157888999999999997 24677
Q ss_pred cHHHHhcCCCCcEEEEcCCCc
Q 006864 302 NDETFAKMKKGVRIVNVARGG 322 (628)
Q Consensus 302 ~~~~l~~mk~gailIN~aRg~ 322 (628)
..+.+ |+|+++||++--.
T Consensus 213 ~~~~v---k~GavVIDVGin~ 230 (287)
T PRK14173 213 TPEMV---RPGAVVVDVGINR 230 (287)
T ss_pred CHHHc---CCCCEEEEccCcc
Confidence 76655 8999999998544
|
|
| >PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0012 Score=69.46 Aligned_cols=79 Identities=19% Similarity=0.247 Sum_probs=66.4
Q ss_pred ceeeecCCeEEEEecCh-hHHHHHHHHHcCCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEcCCCCccccccc
Q 006864 223 VGVSLVGKTLAVMGFGK-VGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIF 301 (628)
Q Consensus 223 ~g~~l~GktiGIIGlG~-IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~sl~ell~~aDvV~l~~Plt~~t~~li 301 (628)
.+.++.||++.|||-+. +|+.+|..|...|+.|..++... .++.+.+++||+|+.++.. .+++
T Consensus 154 ~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~aTVt~chs~T------------~~l~~~~~~ADIvVsAvGk----p~~i 217 (294)
T PRK14187 154 ITRNLSGSDAVVIGRSNIVGKPMACLLLGENCTVTTVHSAT------------RDLADYCSKADILVAAVGI----PNFV 217 (294)
T ss_pred hCCCCCCCEEEEECCCccchHHHHHHHhhCCCEEEEeCCCC------------CCHHHHHhhCCEEEEccCC----cCcc
Confidence 46789999999999885 69999999999999999887642 2578889999999999973 4567
Q ss_pred cHHHHhcCCCCcEEEEcCC
Q 006864 302 NDETFAKMKKGVRIVNVAR 320 (628)
Q Consensus 302 ~~~~l~~mk~gailIN~aR 320 (628)
..+.+ |+|+++||++-
T Consensus 218 ~~~~i---k~gaiVIDVGi 233 (294)
T PRK14187 218 KYSWI---KKGAIVIDVGI 233 (294)
T ss_pred CHHHc---CCCCEEEEecc
Confidence 77665 89999999983
|
|
| >PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0013 Score=68.74 Aligned_cols=78 Identities=21% Similarity=0.354 Sum_probs=65.7
Q ss_pred ceeeecCCeEEEEecCh-hHHHHHHHHHcCCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEcCCCCccccccc
Q 006864 223 VGVSLVGKTLAVMGFGK-VGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIF 301 (628)
Q Consensus 223 ~g~~l~GktiGIIGlG~-IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~sl~ell~~aDvV~l~~Plt~~t~~li 301 (628)
.+.++.||++.|||-+. +|+.+|..|...|+.|..++... -+|.+..++||+|+.+++. .+++
T Consensus 152 ~~i~l~Gk~vvViGrS~~VGkPla~lL~~~~AtVt~chs~T------------~~l~~~~~~ADIvIsAvGk----p~~i 215 (278)
T PRK14172 152 LNIDIEGKEVVVIGRSNIVGKPVAQLLLNENATVTICHSKT------------KNLKEVCKKADILVVAIGR----PKFI 215 (278)
T ss_pred hCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCCC------------CCHHHHHhhCCEEEEcCCC----cCcc
Confidence 46789999999999875 69999999999999999887542 2578889999999999983 4577
Q ss_pred cHHHHhcCCCCcEEEEcC
Q 006864 302 NDETFAKMKKGVRIVNVA 319 (628)
Q Consensus 302 ~~~~l~~mk~gailIN~a 319 (628)
..+.+ |+|+++||++
T Consensus 216 ~~~~i---k~gavVIDvG 230 (278)
T PRK14172 216 DEEYV---KEGAIVIDVG 230 (278)
T ss_pred CHHHc---CCCcEEEEee
Confidence 76654 8999999997
|
|
| >PRK06141 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0017 Score=69.23 Aligned_cols=84 Identities=20% Similarity=0.244 Sum_probs=59.2
Q ss_pred cCCeEEEEecChhHHHHHHHHHc-CC-CEEEEECCCCCh-h-HHHHc---C--Ccc-cCHHHHhccCCEEEEcCCCCccc
Q 006864 228 VGKTLAVMGFGKVGSEVARRAKG-LG-MNVIAHDPYAPA-D-KARAV---G--VEL-VSFDQALATADFISLHMPLNPTT 297 (628)
Q Consensus 228 ~GktiGIIGlG~IG~~vA~~l~~-~G-~~V~~~d~~~~~-~-~a~~~---g--~~~-~sl~ell~~aDvV~l~~Plt~~t 297 (628)
..++++|||.|.+|+.+++.+.. ++ .+|.+||++... + .+... + +.. .++++++++||+|+.+.|..
T Consensus 124 ~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~a~~~~~~g~~~~~~~~~~~av~~aDIVi~aT~s~--- 200 (314)
T PRK06141 124 DASRLLVVGTGRLASLLALAHASVRPIKQVRVWGRDPAKAEALAAELRAQGFDAEVVTDLEAAVRQADIISCATLST--- 200 (314)
T ss_pred CCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhcCCceEEeCCHHHHHhcCCEEEEeeCCC---
Confidence 36899999999999999986653 55 689999987532 2 22222 3 332 37889999999998888743
Q ss_pred cccccHHHHhcCCCCcEEEEc
Q 006864 298 SKIFNDETFAKMKKGVRIVNV 318 (628)
Q Consensus 298 ~~li~~~~l~~mk~gailIN~ 318 (628)
..++.. +.+++|+ +||+
T Consensus 201 ~pvl~~---~~l~~g~-~i~~ 217 (314)
T PRK06141 201 EPLVRG---EWLKPGT-HLDL 217 (314)
T ss_pred CCEecH---HHcCCCC-EEEe
Confidence 455655 3468998 4554
|
|
| >PLN02353 probable UDP-glucose 6-dehydrogenase | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0076 Score=67.84 Aligned_cols=133 Identities=17% Similarity=0.175 Sum_probs=82.6
Q ss_pred CeEEEEecChhHHHHHHHHHcC--CCEEEEECCCCChhHH-----------------HH-cC--Cccc-CHHHHhccCCE
Q 006864 230 KTLAVMGFGKVGSEVARRAKGL--GMNVIAHDPYAPADKA-----------------RA-VG--VELV-SFDQALATADF 286 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~--G~~V~~~d~~~~~~~a-----------------~~-~g--~~~~-sl~ell~~aDv 286 (628)
++|+|||+|.+|..+|..|... |++|++||.....-.. .+ .+ .... ++++.+++||+
T Consensus 2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~~t~~~~~~i~~adv 81 (473)
T PLN02353 2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQLPIYEPGLDEVVKQCRGKNLFFSTDVEKHVAEADI 81 (473)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcCCCccCCCCHHHHHHHhhcCCEEEEcCHHHHHhcCCE
Confidence 5799999999999999999865 6899999965321111 00 01 1122 46778899999
Q ss_pred EEEcCCCCccc-----------ccccc--HHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhCCCeeEEEee---ccCCCC
Q 006864 287 ISLHMPLNPTT-----------SKIFN--DETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALD---VFTEEP 350 (628)
Q Consensus 287 V~l~~Plt~~t-----------~~li~--~~~l~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~ga~lD---V~~~EP 350 (628)
+++|+|..... .++.. +..-..++++.++|.-+.-.+=-.+.+.+.+.+.. .| .| +|.+|=
T Consensus 82 i~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv~~STvp~Gtt~~~~~~l~~~~-~g--~~f~v~~~PEr 158 (473)
T PLN02353 82 VFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNS-KG--INFQILSNPEF 158 (473)
T ss_pred EEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEEEeCCCCCChHHHHHHHHHhhC-CC--CCeEEEECCCc
Confidence 99999732211 12221 23445679999999887755555556666666421 01 22 355665
Q ss_pred CCCC---CccccCCcEEE
Q 006864 351 PAKD---SKLVQHENVTV 365 (628)
Q Consensus 351 ~~~~---~~L~~~~nvil 365 (628)
+.+. ..++..|+||+
T Consensus 159 l~~G~a~~d~~~p~riVi 176 (473)
T PLN02353 159 LAEGTAIEDLFKPDRVLI 176 (473)
T ss_pred cCCCCcccccCCCCEEEE
Confidence 4333 34566677764
|
|
| >PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0013 Score=68.85 Aligned_cols=78 Identities=17% Similarity=0.313 Sum_probs=65.4
Q ss_pred ceeeecCCeEEEEecCh-hHHHHHHHHHcCCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEcCCCCccccccc
Q 006864 223 VGVSLVGKTLAVMGFGK-VGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIF 301 (628)
Q Consensus 223 ~g~~l~GktiGIIGlG~-IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~sl~ell~~aDvV~l~~Plt~~t~~li 301 (628)
.+.++.||++.|||-+. +|+.+|..|...|+.|..++... -+|.+.+++||+|+.+++. .+++
T Consensus 152 y~i~l~Gk~vvViGrS~~VGkPla~lL~~~~ATVt~chs~T------------~dl~~~~k~ADIvIsAvGk----p~~i 215 (282)
T PRK14180 152 YGIKTEGAYAVVVGASNVVGKPVSQLLLNAKATVTTCHRFT------------TDLKSHTTKADILIVAVGK----PNFI 215 (282)
T ss_pred hCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEEcCCC------------CCHHHHhhhcCEEEEccCC----cCcC
Confidence 46789999999999875 69999999999999999887542 1577889999999999983 4567
Q ss_pred cHHHHhcCCCCcEEEEcC
Q 006864 302 NDETFAKMKKGVRIVNVA 319 (628)
Q Consensus 302 ~~~~l~~mk~gailIN~a 319 (628)
..+. .|+|+++||++
T Consensus 216 ~~~~---vk~gavVIDvG 230 (282)
T PRK14180 216 TADM---VKEGAVVIDVG 230 (282)
T ss_pred CHHH---cCCCcEEEEec
Confidence 7655 48999999998
|
|
| >PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0014 Score=68.48 Aligned_cols=79 Identities=18% Similarity=0.219 Sum_probs=66.2
Q ss_pred ceeeecCCeEEEEecCh-hHHHHHHHHHcCCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEcCCCCccccccc
Q 006864 223 VGVSLVGKTLAVMGFGK-VGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIF 301 (628)
Q Consensus 223 ~g~~l~GktiGIIGlG~-IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~sl~ell~~aDvV~l~~Plt~~t~~li 301 (628)
.+.++.||++.|||-+. +|+.+|..|...|+.|..++... -++.+.+++||+|+.+++. .+++
T Consensus 151 ~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~AtVtichs~T------------~nl~~~~~~ADIvI~AvGk----~~~i 214 (282)
T PRK14182 151 ARVDPKGKRALVVGRSNIVGKPMAMMLLERHATVTIAHSRT------------ADLAGEVGRADILVAAIGK----AELV 214 (282)
T ss_pred hCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC------------CCHHHHHhhCCEEEEecCC----cCcc
Confidence 46789999999999885 69999999999999999987542 2477889999999999973 4677
Q ss_pred cHHHHhcCCCCcEEEEcCC
Q 006864 302 NDETFAKMKKGVRIVNVAR 320 (628)
Q Consensus 302 ~~~~l~~mk~gailIN~aR 320 (628)
..+.+ |+|+++||++-
T Consensus 215 ~~~~i---k~gaiVIDvGi 230 (282)
T PRK14182 215 KGAWV---KEGAVVIDVGM 230 (282)
T ss_pred CHHHc---CCCCEEEEeec
Confidence 77665 89999999984
|
|
| >PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0011 Score=53.85 Aligned_cols=61 Identities=21% Similarity=0.385 Sum_probs=50.1
Q ss_pred CCCCchhhHHhhhhcCCccccceEEeeeecCccEEEEEEeCCCC--CHHHHHHHhcccCcccc
Q 006864 567 DQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDEEP--NQDSLKEIGKVHFVARI 627 (628)
Q Consensus 567 D~PGvIa~V~~iL~~~~INIa~m~v~R~~~gg~Al~~i~vD~~~--~~~~l~~L~~l~~v~~v 627 (628)
|+||++.+|+.++...|+||..|.++..+..+..-+.|.++... -+.+.++|.++.+|.+|
T Consensus 1 n~~GvL~Ri~~vf~rRg~nI~sl~v~~~~~~~~~riti~v~~~~~~i~~l~~Ql~KlidV~~V 63 (63)
T PF13710_consen 1 NQPGVLNRITGVFRRRGFNIESLSVGPTEDPGISRITIVVSGDDREIEQLVKQLEKLIDVVKV 63 (63)
T ss_dssp SSTTHHHHHHHHHHTTT-EECEEEEEE-SSTTEEEEEEEEES-CCHHHHHHHHHHCSTTEEEE
T ss_pred CCcHHHHHHHHHHhcCCeEEeeEEeeecCCCCEEEEEEEEeeCchhHHHHHHHHhccCCeEeC
Confidence 68999999999999999999999999988888888878776633 33688999999988765
|
|
| >TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0021 Score=68.93 Aligned_cols=87 Identities=14% Similarity=0.169 Sum_probs=63.4
Q ss_pred CCeEEEEecChhHHHHHHHHHc-C-CCEEEEECCCCCh-hH----HHHcCCc---ccCHHHHhccCCEEEEcCCCCcccc
Q 006864 229 GKTLAVMGFGKVGSEVARRAKG-L-GMNVIAHDPYAPA-DK----ARAVGVE---LVSFDQALATADFISLHMPLNPTTS 298 (628)
Q Consensus 229 GktiGIIGlG~IG~~vA~~l~~-~-G~~V~~~d~~~~~-~~----a~~~g~~---~~sl~ell~~aDvV~l~~Plt~~t~ 298 (628)
-+++||||.|.+|+..++.+.. + .-+|.+||++... +. ..+.|+. ..+.++++++||+|++|+|-. .
T Consensus 128 ~~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r~~~~~~~~~~~~~~~g~~v~~~~~~~eav~~aDiVitaT~s~---~ 204 (325)
T TIGR02371 128 SSVLGIIGAGRQAWTQLEALSRVFDLEEVSVYCRTPSTREKFALRASDYEVPVRAATDPREAVEGCDILVTTTPSR---K 204 (325)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhhCCcEEEeCCHHHHhccCCEEEEecCCC---C
Confidence 4789999999999997777653 2 3589999998632 11 1234532 237999999999999999743 4
Q ss_pred ccccHHHHhcCCCCcEEEEcCCC
Q 006864 299 KIFNDETFAKMKKGVRIVNVARG 321 (628)
Q Consensus 299 ~li~~~~l~~mk~gailIN~aRg 321 (628)
.++..+ .+|||+.+..++.-
T Consensus 205 P~~~~~---~l~~g~~v~~vGs~ 224 (325)
T TIGR02371 205 PVVKAD---WVSEGTHINAIGAD 224 (325)
T ss_pred cEecHH---HcCCCCEEEecCCC
Confidence 566554 35999999998743
|
This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity. |
| >PRK14031 glutamate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.0039 Score=69.27 Aligned_cols=109 Identities=24% Similarity=0.271 Sum_probs=73.8
Q ss_pred eeeecCCeEEEEecChhHHHHHHHHHcCCCEEEEE-C-------CC-CChhHH------------------HHcCCcccC
Q 006864 224 GVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAH-D-------PY-APADKA------------------RAVGVELVS 276 (628)
Q Consensus 224 g~~l~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~-d-------~~-~~~~~a------------------~~~g~~~~s 276 (628)
|.+|.|+|+.|.|+|++|+..|+.|..+|++|++. | +. .+.+.. ...+++..+
T Consensus 223 g~~l~g~rVaVQGfGNVG~~aA~~L~e~GAkVVaVSD~~G~iy~~~Gld~~~l~~~~~~k~~~~~~v~~~~~~~ga~~i~ 302 (444)
T PRK14031 223 GTDLKGKVCLVSGSGNVAQYTAEKVLELGGKVVTMSDSDGYIYDPDGIDREKLDYIMELKNLYRGRIREYAEKYGCKYVE 302 (444)
T ss_pred CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCeEECCCCCCHHHHHHHHHHHhhcCCchhhhHhhcCCEEcC
Confidence 56799999999999999999999999999999983 3 22 111100 111334445
Q ss_pred HHHHhc-cCCEEEEcCCCCccccccccHHHHhcCCC-CcE-EEEcCCCchhcHHHHHHHHhCCCe
Q 006864 277 FDQALA-TADFISLHMPLNPTTSKIFNDETFAKMKK-GVR-IVNVARGGVIDEEALVRALDSGVV 338 (628)
Q Consensus 277 l~ell~-~aDvV~l~~Plt~~t~~li~~~~l~~mk~-gai-lIN~aRg~~vde~aL~~aL~~g~i 338 (628)
-++++. .||+++-|. +.+.|+++...+++. |+. |+--|.+ .+..++.....+.|.+
T Consensus 303 ~d~~~~~~cDIliPaA-----l~n~I~~~na~~l~a~g~~~V~EgAN~-P~t~eA~~~L~~rgI~ 361 (444)
T PRK14031 303 GARPWGEKGDIALPSA-----TQNELNGDDARQLVANGVIAVSEGANM-PSTPEAIKVFQDAKIL 361 (444)
T ss_pred CcccccCCCcEEeecc-----cccccCHHHHHHHHhcCCeEEECCCCC-CCCHHHHHHHHHCCcE
Confidence 556544 699998765 578899988888865 454 4455555 6666665544444443
|
|
| >PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.0021 Score=67.45 Aligned_cols=111 Identities=19% Similarity=0.267 Sum_probs=81.2
Q ss_pred ceeeecCCeEEEEecCh-hHHHHHHHHHc--CCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEcCCCCccccc
Q 006864 223 VGVSLVGKTLAVMGFGK-VGSEVARRAKG--LGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSK 299 (628)
Q Consensus 223 ~g~~l~GktiGIIGlG~-IG~~vA~~l~~--~G~~V~~~d~~~~~~~a~~~g~~~~sl~ell~~aDvV~l~~Plt~~t~~ 299 (628)
.+.++.||++.|||-+. +|+.+|..|.. .++.|..+.... .++.+.+++||+|+.++.. .+
T Consensus 152 ~~i~l~Gk~vvViGrS~~VGkPla~lL~~~~~~atVtvchs~T------------~~l~~~~k~ADIvV~AvGk----p~ 215 (284)
T PRK14193 152 YDVELAGAHVVVIGRGVTVGRPIGLLLTRRSENATVTLCHTGT------------RDLAAHTRRADIIVAAAGV----AH 215 (284)
T ss_pred hCCCCCCCEEEEECCCCcchHHHHHHHhhccCCCEEEEeCCCC------------CCHHHHHHhCCEEEEecCC----cC
Confidence 47789999999999875 79999999987 789999886542 2588899999999999973 35
Q ss_pred cccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhCCCeeEEEeeccCCCCCCCCCccccCCcEEEcCCCCCCcH
Q 006864 300 IFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTK 374 (628)
Q Consensus 300 li~~~~l~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~ga~lDV~~~EP~~~~~~L~~~~nvilTPHig~~T~ 374 (628)
++..+.+ |+|+++||++--.+ .+|++.| ||- .+ ..+.. -.+||--||--.
T Consensus 216 ~i~~~~i---k~GavVIDvGin~~----------~~gkl~G---Dvd-~~-------v~~~a-~~iTPVPGGVGp 265 (284)
T PRK14193 216 LVTADMV---KPGAAVLDVGVSRA----------GDGKLVG---DVH-PD-------VWEVA-GAVSPNPGGVGP 265 (284)
T ss_pred ccCHHHc---CCCCEEEEcccccc----------CCCcEEe---ecC-Hh-------HHhhC-CEEeCCCCChhH
Confidence 7776655 89999999984432 3555543 554 11 11222 258999777643
|
|
| >PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.00047 Score=61.33 Aligned_cols=87 Identities=25% Similarity=0.335 Sum_probs=60.7
Q ss_pred eeecCCeEEEEecChhHHHHHHHHHcCCCEEEEECCCCChhHHHHcCCc--ccCHHHHhccCCEEEEcCCCCcccccccc
Q 006864 225 VSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVE--LVSFDQALATADFISLHMPLNPTTSKIFN 302 (628)
Q Consensus 225 ~~l~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~--~~sl~ell~~aDvV~l~~Plt~~t~~li~ 302 (628)
..++|+++.|||.|.+|..-++.|...|.+|.+++|.. . ..+..++ .-.+++.+..+|+|+.+++ ++ -+|
T Consensus 3 l~l~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~--~-~~~~~i~~~~~~~~~~l~~~~lV~~at~-d~----~~n 74 (103)
T PF13241_consen 3 LDLKGKRVLVVGGGPVAARKARLLLEAGAKVTVISPEI--E-FSEGLIQLIRREFEEDLDGADLVFAATD-DP----ELN 74 (103)
T ss_dssp E--TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSE--H-HHHTSCEEEESS-GGGCTTESEEEE-SS--H----HHH
T ss_pred EEcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCch--h-hhhhHHHHHhhhHHHHHhhheEEEecCC-CH----HHH
Confidence 36899999999999999999999999999999999875 1 1112222 2245677889999998775 22 245
Q ss_pred HHHHhcCCCCcEEEEcC
Q 006864 303 DETFAKMKKGVRIVNVA 319 (628)
Q Consensus 303 ~~~l~~mk~gailIN~a 319 (628)
+.....++.--+++|++
T Consensus 75 ~~i~~~a~~~~i~vn~~ 91 (103)
T PF13241_consen 75 EAIYADARARGILVNVV 91 (103)
T ss_dssp HHHHHHHHHTTSEEEET
T ss_pred HHHHHHHhhCCEEEEEC
Confidence 66666666666888875
|
|
| >PRK09414 glutamate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.0058 Score=67.99 Aligned_cols=108 Identities=20% Similarity=0.214 Sum_probs=73.0
Q ss_pred eeeecCCeEEEEecChhHHHHHHHHHcCCCEEEEE-C-------CC-CChhHH---------------HHcCCcccCHHH
Q 006864 224 GVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAH-D-------PY-APADKA---------------RAVGVELVSFDQ 279 (628)
Q Consensus 224 g~~l~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~-d-------~~-~~~~~a---------------~~~g~~~~sl~e 279 (628)
+.++.|+|+.|.|+|++|+.+|+.|..+|++|++. | |. .+.+.. ...+.+..+.++
T Consensus 227 ~~~l~g~rVaIqGfGnVG~~~A~~L~~~GakVVavsDs~G~iyn~~GLD~~~L~~~k~~~~~~l~~~~~~~~~~~i~~~~ 306 (445)
T PRK09414 227 GDSFEGKRVVVSGSGNVAIYAIEKAQQLGAKVVTCSDSSGYVYDEEGIDLEKLKEIKEVRRGRISEYAEEFGAEYLEGGS 306 (445)
T ss_pred CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCceEECCCCCCHHHHHHHHHhcCCchhhhhhhcCCeecCCcc
Confidence 45789999999999999999999999999999986 5 22 111100 001223345555
Q ss_pred Hhc-cCCEEEEcCCCCccccccccHHHHhcCC--CCcEEEEcCCCchhcHHHHHHHHhCCCe
Q 006864 280 ALA-TADFISLHMPLNPTTSKIFNDETFAKMK--KGVRIVNVARGGVIDEEALVRALDSGVV 338 (628)
Q Consensus 280 ll~-~aDvV~l~~Plt~~t~~li~~~~l~~mk--~gailIN~aRg~~vde~aL~~aL~~g~i 338 (628)
++. +||+++-|.. .+.|+.+...+++ +-.+|+-.|-+.+ ..++ .+.|.+..|
T Consensus 307 i~~~d~DVliPaAl-----~n~It~~~a~~i~~~~akiIvEgAN~p~-t~~A-~~~L~~rGI 361 (445)
T PRK09414 307 PWSVPCDIALPCAT-----QNELDEEDAKTLIANGVKAVAEGANMPS-TPEA-IEVFLEAGV 361 (445)
T ss_pred ccccCCcEEEecCC-----cCcCCHHHHHHHHHcCCeEEEcCCCCCC-CHHH-HHHHHHCCc
Confidence 555 6999988874 5677777766663 2346677777777 5554 455655544
|
|
| >cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.0018 Score=53.47 Aligned_cols=66 Identities=20% Similarity=0.294 Sum_probs=51.8
Q ss_pred EEEeccCCCCchhhHHhhhhcCCccccceEEeeeecCccEEEEEEeCCCC-C---HHHHHHHhcccCcccc
Q 006864 561 ILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDEEP-N---QDSLKEIGKVHFVARI 627 (628)
Q Consensus 561 Llv~~~D~PGvIa~V~~iL~~~~INIa~m~v~R~~~gg~Al~~i~vD~~~-~---~~~l~~L~~l~~v~~v 627 (628)
|.+...|+||.++.|.+.|+++++||..++..+. .++.+-+.+.++..- . ++++++|+++|+|.+|
T Consensus 3 l~i~~~d~~g~l~~I~~~la~~~inI~~i~~~~~-~~~~~~i~~~v~v~~~~~~l~~l~~~L~~i~~V~~v 72 (76)
T cd04888 3 LSLLLEHRPGVLSKVLNTIAQVRGNVLTINQNIP-IHGRANVTISIDTSTMNGDIDELLEELREIDGVEKV 72 (76)
T ss_pred EEEEecCCCchHHHHHHHHHHcCCCEEEEEeCCC-CCCeEEEEEEEEcCchHHHHHHHHHHHhcCCCeEEE
Confidence 5677899999999999999999999999987542 345666666664322 2 3789999999999876
|
a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains. |
| >TIGR00507 aroE shikimate 5-dehydrogenase | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.0035 Score=65.25 Aligned_cols=104 Identities=17% Similarity=0.217 Sum_probs=68.5
Q ss_pred ecCCeEEEEecChhHHHHHHHHHcCCCEEEEECCCCCh--hHHHHc---C-CcccCHHHH-hccCCEEEEcCCCC--ccc
Q 006864 227 LVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPA--DKARAV---G-VELVSFDQA-LATADFISLHMPLN--PTT 297 (628)
Q Consensus 227 l~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~--~~a~~~---g-~~~~sl~el-l~~aDvV~l~~Plt--~~t 297 (628)
..+|+++|+|.|.+|++++..|...|.+|.++|+.... +.+... + ....++++. +.++|+|+.++|.. ++.
T Consensus 115 ~~~k~vliiGaGg~g~aia~~L~~~g~~v~v~~R~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~DivInatp~gm~~~~ 194 (270)
T TIGR00507 115 RPNQRVLIIGAGGAARAVALPLLKADCNVIIANRTVSKAEELAERFQRYGEIQAFSMDELPLHRVDLIINATSAGMSGNI 194 (270)
T ss_pred ccCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhhcCceEEechhhhcccCccEEEECCCCCCCCCC
Confidence 46789999999999999999999999999999987422 112221 2 122345543 35899999999974 222
Q ss_pred cc-cccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhC
Q 006864 298 SK-IFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDS 335 (628)
Q Consensus 298 ~~-li~~~~l~~mk~gailIN~aRg~~vde~aL~~aL~~ 335 (628)
.. .+. ...++++.+++|+.-... ++ .|.+..++
T Consensus 195 ~~~~~~---~~~l~~~~~v~D~~y~p~-~T-~ll~~A~~ 228 (270)
T TIGR00507 195 DEPPVP---AEKLKEGMVVYDMVYNPG-ET-PFLAEAKS 228 (270)
T ss_pred CCCCCC---HHHcCCCCEEEEeccCCC-CC-HHHHHHHH
Confidence 11 122 345788889999876554 33 34444443
|
This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain. |
| >PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.002 Score=67.56 Aligned_cols=78 Identities=22% Similarity=0.327 Sum_probs=65.6
Q ss_pred ceeeecCCeEEEEecCh-hHHHHHHHHHc----CCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEcCCCCccc
Q 006864 223 VGVSLVGKTLAVMGFGK-VGSEVARRAKG----LGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTT 297 (628)
Q Consensus 223 ~g~~l~GktiGIIGlG~-IG~~vA~~l~~----~G~~V~~~d~~~~~~~a~~~g~~~~sl~ell~~aDvV~l~~Plt~~t 297 (628)
.+.++.||++.|||-+. +|+.+|..|.. .++.|..++... .++.+.+++||+|+.+++ .
T Consensus 151 ~~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~AtVt~~hs~t------------~~l~~~~~~ADIVI~AvG----~ 214 (286)
T PRK14184 151 YGLSPAGKKAVVVGRSNIVGKPLALMLGAPGKFANATVTVCHSRT------------PDLAEECREADFLFVAIG----R 214 (286)
T ss_pred hCCCCCCCEEEEECCCccchHHHHHHHhCCcccCCCEEEEEeCCc------------hhHHHHHHhCCEEEEecC----C
Confidence 46789999999999885 69999999998 789998876432 258889999999999995 3
Q ss_pred cccccHHHHhcCCCCcEEEEcC
Q 006864 298 SKIFNDETFAKMKKGVRIVNVA 319 (628)
Q Consensus 298 ~~li~~~~l~~mk~gailIN~a 319 (628)
.+++..+.+ |+|+++||++
T Consensus 215 p~li~~~~v---k~GavVIDVG 233 (286)
T PRK14184 215 PRFVTADMV---KPGAVVVDVG 233 (286)
T ss_pred CCcCCHHHc---CCCCEEEEee
Confidence 567887666 9999999998
|
|
| >TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.0038 Score=66.34 Aligned_cols=113 Identities=20% Similarity=0.217 Sum_probs=73.1
Q ss_pred CeEEEEecChhHHHHHHHHHcCCC-EEEEECCCCChhHHHHc---------C----Ccc-cCHHHHhccCCEEEEcCCCC
Q 006864 230 KTLAVMGFGKVGSEVARRAKGLGM-NVIAHDPYAPADKARAV---------G----VEL-VSFDQALATADFISLHMPLN 294 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~~~~~a~~~---------g----~~~-~sl~ell~~aDvV~l~~Plt 294 (628)
++|+|||.|.+|..+|..+...|. +|+.+|........... . +.. .++++ +++||+|+++++..
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~~l~~g~a~d~~~~~~~~~~~~~i~~t~d~~~-~~~aDiVIitag~p 80 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVEGIPQGKALDMYEASPVGGFDTKVTGTNNYAD-TANSDIVVITAGLP 80 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCCChhHHHHHhhhhhhhccCCCcEEEecCCHHH-hCCCCEEEEcCCCC
Confidence 589999999999999999988775 89999986533222211 0 111 25666 79999999999842
Q ss_pred cccccc-------ccH-------HHHhcCCCCcEEEEcCCCchhcHHHHHHH--HhCCCeeEEE--ee
Q 006864 295 PTTSKI-------FND-------ETFAKMKKGVRIVNVARGGVIDEEALVRA--LDSGVVAQAA--LD 344 (628)
Q Consensus 295 ~~t~~l-------i~~-------~~l~~mk~gailIN~aRg~~vde~aL~~a--L~~g~i~ga~--lD 344 (628)
...++ .|. +.+....+++++|+++-.-=+....+.+. +...++.|.+ ||
T Consensus 81 -~~~~~sR~~l~~~N~~iv~~i~~~I~~~~p~~~iIv~tNP~di~t~~~~~~sg~~~~rviG~g~~ld 147 (305)
T TIGR01763 81 -RKPGMSREDLLSMNAGIVREVTGRIMEHSPNPIIVVVSNPLDAMTYVAWQKSGFPKERVIGQAGVLD 147 (305)
T ss_pred -CCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHHCcCHHHEEEeccchH
Confidence 22221 111 22334457889999976544445555555 4455676764 56
|
The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable. |
| >PRK00194 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.00077 Score=58.16 Aligned_cols=64 Identities=22% Similarity=0.204 Sum_probs=47.0
Q ss_pred CcEEEEeccCCCCchhhHHhhhhcCCccccceEEeeeecCccEEEEEE--eCC-CCCH-HHHHHHhcccC
Q 006864 558 GNLILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIG--VDE-EPNQ-DSLKEIGKVHF 623 (628)
Q Consensus 558 ~~~Llv~~~D~PGvIa~V~~iL~~~~INIa~m~v~R~~~gg~Al~~i~--vD~-~~~~-~~l~~L~~l~~ 623 (628)
.+.+.+..+|+||+++.|++.|+++|+||.+++... .++...+.+. ++. +.+. ++.++|+++..
T Consensus 3 ~~~ltv~g~DrpGiva~vt~~la~~g~nI~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~l~~l~~ 70 (90)
T PRK00194 3 KAIITVIGKDKVGIIAGVSTVLAELNVNILDISQTI--MDGYFTMIMLVDISESKKDFAELKEELEELGK 70 (90)
T ss_pred eEEEEEEcCCCCCHHHHHHHHHHHcCCCEEehhhHh--hCCeeEEEEEEEecCCCCCHHHHHHHHHHHHH
Confidence 356677889999999999999999999999999875 4567777444 443 2333 44466666543
|
|
| >PRK14030 glutamate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.018 Score=63.99 Aligned_cols=108 Identities=24% Similarity=0.322 Sum_probs=75.7
Q ss_pred eeeecCCeEEEEecChhHHHHHHHHHcCCCEEEE--------ECCCC-ChhHH--------------H----Hc-CCccc
Q 006864 224 GVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIA--------HDPYA-PADKA--------------R----AV-GVELV 275 (628)
Q Consensus 224 g~~l~GktiGIIGlG~IG~~vA~~l~~~G~~V~~--------~d~~~-~~~~a--------------~----~~-g~~~~ 275 (628)
|.++.|+|+.|=|+|++|+..|+.|..+|++|++ |||.- +.+.. . .. +.+.+
T Consensus 223 g~~l~g~~vaIQGfGnVG~~aA~~L~e~GakvVavSD~~G~i~d~~Gld~~~l~~l~~~k~~~~~~~~~~~~~~~ga~~i 302 (445)
T PRK14030 223 GIDIKGKTVAISGFGNVAWGAATKATELGAKVVTISGPDGYIYDPDGISGEKIDYMLELRASGNDIVAPYAEKFPGSTFF 302 (445)
T ss_pred CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCceEECCCCCCHHHHHHHHHHHHhcCccHHHHHhcCCCCEEc
Confidence 5579999999999999999999999999999999 88763 32220 0 11 33444
Q ss_pred CHHHHhc-cCCEEEEcCCCCccccccccHHHHhcCC--CCcEEEEcCCCchhcHHHHHHHHhCCCe
Q 006864 276 SFDQALA-TADFISLHMPLNPTTSKIFNDETFAKMK--KGVRIVNVARGGVIDEEALVRALDSGVV 338 (628)
Q Consensus 276 sl~ell~-~aDvV~l~~Plt~~t~~li~~~~l~~mk--~gailIN~aRg~~vde~aL~~aL~~g~i 338 (628)
+-++++. .||+++-|. +.+.|+.+...++. +-.+|+--|-+ .+..+|- +.|.+..|
T Consensus 303 ~~~~~~~~~cDVliPcA-----l~n~I~~~na~~l~~~~ak~V~EgAN~-p~t~eA~-~iL~~rGI 361 (445)
T PRK14030 303 AGKKPWEQKVDIALPCA-----TQNELNGEDADKLIKNGVLCVAEVSNM-GCTAEAI-DKFIAAKQ 361 (445)
T ss_pred CCccceeccccEEeecc-----ccccCCHHHHHHHHHcCCeEEEeCCCC-CCCHHHH-HHHHHCCC
Confidence 5556554 599988766 67888888877772 23466666666 6666654 45555444
|
|
| >TIGR01921 DAP-DH diaminopimelate dehydrogenase | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.0024 Score=68.16 Aligned_cols=105 Identities=15% Similarity=0.201 Sum_probs=68.4
Q ss_pred CeEEEEecChhHHHHHHHHHcC-CCEEEE-ECCCCChhHHHHcCCc-ccCHHHHhccCCEEEEcCCCCccccccccHHHH
Q 006864 230 KTLAVMGFGKVGSEVARRAKGL-GMNVIA-HDPYAPADKARAVGVE-LVSFDQALATADFISLHMPLNPTTSKIFNDETF 306 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~-G~~V~~-~d~~~~~~~a~~~g~~-~~sl~ell~~aDvV~l~~Plt~~t~~li~~~~l 306 (628)
.++||||+|+||+.+++.++.. ++++.+ +|+..........++. ..+.++++.+.|+|++|+|... . -....
T Consensus 4 IRVgIVG~GnIGr~~a~al~~~pd~ELVgV~dr~~~~~~~~~~~v~~~~d~~e~l~~iDVViIctPs~t--h---~~~~~ 78 (324)
T TIGR01921 4 IRAAIVGYGNLGRSVEKAIQQQPDMELVGVFSRRGAETLDTETPVYAVADDEKHLDDVDVLILCMGSAT--D---IPEQA 78 (324)
T ss_pred cEEEEEeecHHHHHHHHHHHhCCCcEEEEEEcCCcHHHHhhcCCccccCCHHHhccCCCEEEEcCCCcc--C---HHHHH
Confidence 5899999999999999999765 799887 6876422222223332 2367788899999999998442 2 23344
Q ss_pred hcCCCCcEEEEcCCCc--hhc-HHHHHHHHhC-CCee
Q 006864 307 AKMKKGVRIVNVARGG--VID-EEALVRALDS-GVVA 339 (628)
Q Consensus 307 ~~mk~gailIN~aRg~--~vd-e~aL~~aL~~-g~i~ 339 (628)
..|+.|.=+|++.--. +-+ .+.|-++-++ |++.
T Consensus 79 ~~L~aG~NVV~s~~~h~~~p~~~~~ld~AAk~~g~vs 115 (324)
T TIGR01921 79 PYFAQFANTVDSFDNHRDIPRHRQVMDAAAKAAGNVS 115 (324)
T ss_pred HHHHcCCCEEECCCcccCCHHHHHHHHHHHHHcCCEE
Confidence 4567777788874321 112 3344455553 5553
|
This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized. |
| >PRK07340 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.0031 Score=66.92 Aligned_cols=87 Identities=13% Similarity=0.109 Sum_probs=64.7
Q ss_pred cCCeEEEEecChhHHHHHHHHHc-CC-CEEEEECCCCCh--hHHHHc---CCc--ccCHHHHhccCCEEEEcCCCCcccc
Q 006864 228 VGKTLAVMGFGKVGSEVARRAKG-LG-MNVIAHDPYAPA--DKARAV---GVE--LVSFDQALATADFISLHMPLNPTTS 298 (628)
Q Consensus 228 ~GktiGIIGlG~IG~~vA~~l~~-~G-~~V~~~d~~~~~--~~a~~~---g~~--~~sl~ell~~aDvV~l~~Plt~~t~ 298 (628)
..++++|||.|.+|+..++.+.. ++ -+|.+||+.... ..+..+ ++. ..++++++.+||+|+.++|-+ .
T Consensus 124 ~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~~~~~~~~~~~~~~~~~av~~aDiVitaT~s~---~ 200 (304)
T PRK07340 124 PPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAASAAAFCAHARALGPTAEPLDGEAIPEAVDLVVTATTSR---T 200 (304)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCCeeEECCHHHHhhcCCEEEEccCCC---C
Confidence 46899999999999999999864 66 479999987522 122222 223 237899999999999999844 4
Q ss_pred ccccHHHHhcCCCCcEEEEcCCC
Q 006864 299 KIFNDETFAKMKKGVRIVNVARG 321 (628)
Q Consensus 299 ~li~~~~l~~mk~gailIN~aRg 321 (628)
.++.. .+|||+.|+.++.-
T Consensus 201 Pl~~~----~~~~g~hi~~iGs~ 219 (304)
T PRK07340 201 PVYPE----AARAGRLVVAVGAF 219 (304)
T ss_pred ceeCc----cCCCCCEEEecCCC
Confidence 66654 36999999998753
|
|
| >TIGR00119 acolac_sm acetolactate synthase, small subunit | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.0016 Score=62.62 Aligned_cols=69 Identities=19% Similarity=0.320 Sum_probs=55.3
Q ss_pred cEEEEeccCCCCchhhHHhhhhcCCccccceEEeeeecCccEEEEEEeCCC--CCHHHHHHHhcccCcccc
Q 006864 559 NLILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDEE--PNQDSLKEIGKVHFVARI 627 (628)
Q Consensus 559 ~~Llv~~~D~PGvIa~V~~iL~~~~INIa~m~v~R~~~gg~Al~~i~vD~~--~~~~~l~~L~~l~~v~~v 627 (628)
|+|-+...|+||++++|+.+++++|+||..+.++.....+...|.+.++.. .-+.+.++|.++-+|.+|
T Consensus 2 ~~isI~ven~pGvL~rI~~lf~rrg~NI~Sl~v~~t~~~~~sriti~V~~d~~~i~qi~kQl~Kli~V~~V 72 (157)
T TIGR00119 2 HILSVLVENEPGVLSRVAGLFTRRGFNIESLTVGPTEDPDLSRMTIVVVGDDKVLEQITKQLNKLVDVIKV 72 (157)
T ss_pred EEEEEEEcCCCcHHHHHHHHHHhCCceEEEEEEeecCCCCEEEEEEEEECCHHHHHHHHHHHhcCccEEEE
Confidence 577788899999999999999999999999999987656788887887662 222456777777777654
|
acetohydroxyacid synthase is a synonym. |
| >cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.014 Score=58.97 Aligned_cols=106 Identities=28% Similarity=0.336 Sum_probs=68.9
Q ss_pred eeecCCeEEEEecChhHHHHHHHHHcCCCEEEE-ECCCC-------Ch-hH---HHHc-CCcc------cCHHHHh-ccC
Q 006864 225 VSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIA-HDPYA-------PA-DK---ARAV-GVEL------VSFDQAL-ATA 284 (628)
Q Consensus 225 ~~l~GktiGIIGlG~IG~~vA~~l~~~G~~V~~-~d~~~-------~~-~~---a~~~-g~~~------~sl~ell-~~a 284 (628)
.++.|+++.|.|||++|+.+|+.|...|.+|++ .|... +. +. .++. ++.. .+-++++ .+|
T Consensus 19 ~~l~g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~g~i~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 98 (217)
T cd05211 19 DSLEGLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDGYIYDPGITTEELINYAVALGGSARVKVQDYFPGEAILGLDV 98 (217)
T ss_pred CCcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCCcEECCCCCHHHHHHHHHhhCCccccCcccccCcccceeccc
Confidence 468999999999999999999999999997766 45432 11 11 1111 1211 1224443 379
Q ss_pred CEEEEcCCCCccccccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhCCCe
Q 006864 285 DFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVV 338 (628)
Q Consensus 285 DvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~~vde~aL~~aL~~g~i 338 (628)
|+++-|.+ .+.|+.+....++ -.+++-.+.+.+-+ ++ .+.|++..+
T Consensus 99 DVlipaA~-----~~~i~~~~a~~l~-a~~V~e~AN~p~t~-~a-~~~L~~~Gi 144 (217)
T cd05211 99 DIFAPCAL-----GNVIDLENAKKLK-AKVVAEGANNPTTD-EA-LRILHERGI 144 (217)
T ss_pred cEEeeccc-----cCccChhhHhhcC-ccEEEeCCCCCCCH-HH-HHHHHHCCc
Confidence 99999886 4577888887776 44666667777655 44 444544433
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral |
| >COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.0022 Score=66.76 Aligned_cols=113 Identities=19% Similarity=0.309 Sum_probs=81.7
Q ss_pred cceeeecCCeEEEEecChh-HHHHHHHHHcCCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEcCCCCcccccc
Q 006864 222 YVGVSLVGKTLAVMGFGKV-GSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKI 300 (628)
Q Consensus 222 ~~g~~l~GktiGIIGlG~I-G~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~sl~ell~~aDvV~l~~Plt~~t~~l 300 (628)
+.+.+++||++.|||-++| |+.+|..|...++.|.+.+... -++.+..++||+|+.++- -.++
T Consensus 149 ~~~i~l~Gk~~vVVGrS~iVGkPla~lL~~~naTVtvcHs~T------------~~l~~~~k~ADIvv~AvG----~p~~ 212 (283)
T COG0190 149 EYGIDLRGKNVVVVGRSNIVGKPLALLLLNANATVTVCHSRT------------KDLASITKNADIVVVAVG----KPHF 212 (283)
T ss_pred HhCCCCCCCEEEEECCCCcCcHHHHHHHHhCCCEEEEEcCCC------------CCHHHHhhhCCEEEEecC----Cccc
Confidence 3467999999999999975 9999999999999999987653 257788899999999885 3466
Q ss_pred ccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhCCCeeEEEeeccCCCCCCCCCccccCCcEEEcCCCCCCcH
Q 006864 301 FNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTK 374 (628)
Q Consensus 301 i~~~~l~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~ga~lDV~~~EP~~~~~~L~~~~nvilTPHig~~T~ 374 (628)
+..+. .|+|+++||++--. ++++++.| ||--.+ ...-.-.+||--||--.
T Consensus 213 i~~d~---vk~gavVIDVGinr----------v~~~kl~G---DVdf~~--------v~~~a~~iTPVPGGVGP 262 (283)
T COG0190 213 IKADM---VKPGAVVIDVGINR----------VNDGKLVG---DVDFDS--------VKEKASAITPVPGGVGP 262 (283)
T ss_pred ccccc---ccCCCEEEecCCcc----------ccCCceEe---eccHHH--------HHHhhcccCCCCCccCH
Confidence 66543 59999999998433 33366644 442222 11123357888877644
|
|
| >PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.0017 Score=62.70 Aligned_cols=69 Identities=17% Similarity=0.287 Sum_probs=56.2
Q ss_pred cEEEEeccCCCCchhhHHhhhhcCCccccceEEeeeecCccEEEEEEeCC--CCCHHHHHHHhcccCcccc
Q 006864 559 NLILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDE--EPNQDSLKEIGKVHFVARI 627 (628)
Q Consensus 559 ~~Llv~~~D~PGvIa~V~~iL~~~~INIa~m~v~R~~~gg~Al~~i~vD~--~~~~~~l~~L~~l~~v~~v 627 (628)
|+|-+...|+||++++|+.+++++|+||..+.++.....+...+.+.++. ..=+.+.++|.++.+|.+|
T Consensus 3 ~~IsV~veN~pGvL~rI~~lf~rrg~NI~Sl~v~~te~~~~sriti~V~~~~~~i~qi~kQl~KLidV~~V 73 (161)
T PRK11895 3 HTLSVLVENEPGVLSRVAGLFSRRGYNIESLTVGPTEDPGLSRMTIVTSGDEQVIEQITKQLNKLIDVLKV 73 (161)
T ss_pred EEEEEEEcCCCcHHHHHHHHHHhCCCcEEEEEeeecCCCCEEEEEEEEECCHHHHHHHHHHHhccccEEEE
Confidence 67778889999999999999999999999999998765677777777764 3233677778888887765
|
|
| >PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.0031 Score=66.34 Aligned_cols=79 Identities=18% Similarity=0.269 Sum_probs=64.2
Q ss_pred ceeeecCCeEEEEecCh-hHHHHHHHHHcC----CCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEcCCCCccc
Q 006864 223 VGVSLVGKTLAVMGFGK-VGSEVARRAKGL----GMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTT 297 (628)
Q Consensus 223 ~g~~l~GktiGIIGlG~-IG~~vA~~l~~~----G~~V~~~d~~~~~~~a~~~g~~~~sl~ell~~aDvV~l~~Plt~~t 297 (628)
.+.++.||++.|||-+. +|+.+|..|... ++.|..+.... -+|.+.+++||+|+.+++.
T Consensus 151 ~~i~l~GK~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~T------------~nl~~~~~~ADIvIsAvGk---- 214 (293)
T PRK14185 151 YHIETSGKKCVVLGRSNIVGKPMAQLMMQKAYPGDCTVTVCHSRS------------KNLKKECLEADIIIAALGQ---- 214 (293)
T ss_pred hCCCCCCCEEEEECCCccchHHHHHHHHcCCCCCCCEEEEecCCC------------CCHHHHHhhCCEEEEccCC----
Confidence 46789999999999885 699999999876 68898876432 2578889999999999973
Q ss_pred cccccHHHHhcCCCCcEEEEcCC
Q 006864 298 SKIFNDETFAKMKKGVRIVNVAR 320 (628)
Q Consensus 298 ~~li~~~~l~~mk~gailIN~aR 320 (628)
.+++..+. .|+|+++||++-
T Consensus 215 p~~i~~~~---vk~gavVIDvGi 234 (293)
T PRK14185 215 PEFVKADM---VKEGAVVIDVGT 234 (293)
T ss_pred cCccCHHH---cCCCCEEEEecC
Confidence 45677654 589999999984
|
|
| >PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.0026 Score=67.07 Aligned_cols=79 Identities=16% Similarity=0.205 Sum_probs=64.6
Q ss_pred ceeeecCCeEEEEecCh-hHHHHHHHHHc----CCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEcCCCCccc
Q 006864 223 VGVSLVGKTLAVMGFGK-VGSEVARRAKG----LGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTT 297 (628)
Q Consensus 223 ~g~~l~GktiGIIGlG~-IG~~vA~~l~~----~G~~V~~~d~~~~~~~a~~~g~~~~sl~ell~~aDvV~l~~Plt~~t 297 (628)
.+.++.||++.|||-+. +|+.+|..|.. .+..|....... .++.+.+++||+|+.+++..
T Consensus 153 y~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~atVt~~hs~t------------~~l~~~~~~ADIvI~Avg~~--- 217 (295)
T PRK14174 153 YNIETKGKHCVVVGRSNIVGKPMANLMLQKLKESNCTVTICHSAT------------KDIPSYTRQADILIAAIGKA--- 217 (295)
T ss_pred hCCCCCCCEEEEECCCCcchHHHHHHHHhccccCCCEEEEEeCCc------------hhHHHHHHhCCEEEEecCcc---
Confidence 46789999999999885 69999999976 578888766432 24788899999999999632
Q ss_pred cccccHHHHhcCCCCcEEEEcCC
Q 006864 298 SKIFNDETFAKMKKGVRIVNVAR 320 (628)
Q Consensus 298 ~~li~~~~l~~mk~gailIN~aR 320 (628)
+++..+.+ |+|+++||++-
T Consensus 218 -~li~~~~v---k~GavVIDVgi 236 (295)
T PRK14174 218 -RFITADMV---KPGAVVIDVGI 236 (295)
T ss_pred -CccCHHHc---CCCCEEEEeec
Confidence 67888777 99999999983
|
|
| >cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.0031 Score=51.96 Aligned_cols=64 Identities=20% Similarity=0.328 Sum_probs=49.4
Q ss_pred EEEeccCCCCchhhHHhhhhcCCccccceEEeeeecCccEEEEEEeC--C-CCCHHHHHHHhcccCcc
Q 006864 561 ILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVD--E-EPNQDSLKEIGKVHFVA 625 (628)
Q Consensus 561 Llv~~~D~PGvIa~V~~iL~~~~INIa~m~v~R~~~gg~Al~~i~vD--~-~~~~~~l~~L~~l~~v~ 625 (628)
|.+...|+||.++.|++.+++.|+||..++..+.. .+.+.+.+.+. . +--..++++|+++|+|.
T Consensus 2 l~v~~~d~~g~L~~i~~~i~~~~~nI~~v~~~~~~-~~~~~~~~~vev~~~~~l~~i~~~L~~i~gV~ 68 (74)
T cd04887 2 LRLELPNRPGMLGRVTTAIGEAGGDIGAIDLVEQG-RDYTVRDITVDAPSEEHAETIVAAVRALPEVK 68 (74)
T ss_pred EEEEeCCCCchHHHHHHHHHHcCCcEEEEEEEEec-CCEEEEEEEEEcCCHHHHHHHHHHHhcCCCeE
Confidence 45677899999999999999999999999986643 46665554443 2 22237899999999875
|
The ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI, a malolactic enzyme (MalLac-Enz) which converts malate to lactate, and other related ACT domains. The yqkJ product is predicted to convert malate directly to lactate, as opposed to related malic enzymes that convert malate to pyruvate. Members of this CD belong to the superfamily of ACT regulatory domains. |
| >PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.0038 Score=65.83 Aligned_cols=79 Identities=16% Similarity=0.262 Sum_probs=64.0
Q ss_pred ceeeecCCeEEEEecCh-hHHHHHHHHHcC----CCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEcCCCCccc
Q 006864 223 VGVSLVGKTLAVMGFGK-VGSEVARRAKGL----GMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTT 297 (628)
Q Consensus 223 ~g~~l~GktiGIIGlG~-IG~~vA~~l~~~----G~~V~~~d~~~~~~~a~~~g~~~~sl~ell~~aDvV~l~~Plt~~t 297 (628)
.+.++.||++.|||-+. +|+.+|..|... ++.|..+.... -+|.+..++||+|+.++- -
T Consensus 151 ~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~T------------~~l~~~~~~ADIvIsAvG----k 214 (297)
T PRK14167 151 AGVDTEGADVVVVGRSDIVGKPMANLLIQKADGGNATVTVCHSRT------------DDLAAKTRRADIVVAAAG----V 214 (297)
T ss_pred hCCCCCCCEEEEECCCcccHHHHHHHHhcCccCCCCEEEEeCCCC------------CCHHHHHhhCCEEEEccC----C
Confidence 46789999999999875 699999999865 78998876432 257888999999999886 2
Q ss_pred cccccHHHHhcCCCCcEEEEcCC
Q 006864 298 SKIFNDETFAKMKKGVRIVNVAR 320 (628)
Q Consensus 298 ~~li~~~~l~~mk~gailIN~aR 320 (628)
.+++..+. .|+|+++||++-
T Consensus 215 p~~i~~~~---ik~gaiVIDvGi 234 (297)
T PRK14167 215 PELIDGSM---LSEGATVIDVGI 234 (297)
T ss_pred cCccCHHH---cCCCCEEEEccc
Confidence 45777654 489999999983
|
|
| >PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.0025 Score=71.79 Aligned_cols=70 Identities=16% Similarity=0.242 Sum_probs=51.8
Q ss_pred eeecCCeEEEEecChhHHHHHHHHHcCCCEEEEECCCCCh--hHHHHcCCcccCHHHH--hccCCEEEEcCCCC
Q 006864 225 VSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPA--DKARAVGVELVSFDQA--LATADFISLHMPLN 294 (628)
Q Consensus 225 ~~l~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~--~~a~~~g~~~~sl~el--l~~aDvV~l~~Plt 294 (628)
..+.|++++|+|.|.+|++++..|...|++|.++|+.... ..+...+....+++++ +.++|+|+.|+|..
T Consensus 328 ~~~~~k~vlIiGaGgiG~aia~~L~~~G~~V~i~~R~~~~~~~la~~~~~~~~~~~~~~~l~~~DiVInatP~g 401 (477)
T PRK09310 328 IPLNNQHVAIVGAGGAAKAIATTLARAGAELLIFNRTKAHAEALASRCQGKAFPLESLPELHRIDIIINCLPPS 401 (477)
T ss_pred CCcCCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccceechhHhcccCCCCEEEEcCCCC
Confidence 4577899999999999999999999999999999886422 1122223233334433 57899999999965
|
|
| >PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.0041 Score=65.65 Aligned_cols=81 Identities=19% Similarity=0.274 Sum_probs=65.2
Q ss_pred ceeeecCCeEEEEecCh-hHHHHHHHHHcC----CCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEcCCCCccc
Q 006864 223 VGVSLVGKTLAVMGFGK-VGSEVARRAKGL----GMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTT 297 (628)
Q Consensus 223 ~g~~l~GktiGIIGlG~-IG~~vA~~l~~~----G~~V~~~d~~~~~~~a~~~g~~~~sl~ell~~aDvV~l~~Plt~~t 297 (628)
.+.++.||++.|||-+. +|+.+|..|... ++.|..+.... -++.+.+++||+|+.++. .
T Consensus 155 ~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~atVtv~hs~T------------~~l~~~~~~ADIvVsAvG----k 218 (297)
T PRK14168 155 SGVETSGAEVVVVGRSNIVGKPIANMMTQKGPGANATVTIVHTRS------------KNLARHCQRADILIVAAG----V 218 (297)
T ss_pred hCCCCCCCEEEEECCCCcccHHHHHHHHhcccCCCCEEEEecCCC------------cCHHHHHhhCCEEEEecC----C
Confidence 47799999999999875 699999999876 78898875432 257888999999999986 2
Q ss_pred cccccHHHHhcCCCCcEEEEcCCCc
Q 006864 298 SKIFNDETFAKMKKGVRIVNVARGG 322 (628)
Q Consensus 298 ~~li~~~~l~~mk~gailIN~aRg~ 322 (628)
.+++..+.+ |+|+++||++--.
T Consensus 219 p~~i~~~~i---k~gavVIDvGin~ 240 (297)
T PRK14168 219 PNLVKPEWI---KPGATVIDVGVNR 240 (297)
T ss_pred cCccCHHHc---CCCCEEEecCCCc
Confidence 456776655 8999999998443
|
|
| >PRK13940 glutamyl-tRNA reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.004 Score=68.90 Aligned_cols=89 Identities=15% Similarity=0.218 Sum_probs=61.9
Q ss_pred eecCCeEEEEecChhHHHHHHHHHcCCC-EEEEECCCCCh--hHHHHcC-Cccc---CHHHHhccCCEEEEcCCCCcccc
Q 006864 226 SLVGKTLAVMGFGKVGSEVARRAKGLGM-NVIAHDPYAPA--DKARAVG-VELV---SFDQALATADFISLHMPLNPTTS 298 (628)
Q Consensus 226 ~l~GktiGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~~~--~~a~~~g-~~~~---sl~ell~~aDvV~l~~Plt~~t~ 298 (628)
.+.|+++.|||.|.+|+.+++.|...|. ++++++|.... ..+...+ .... ++.+.+.++|+|+.|++.. .
T Consensus 178 ~l~~kkvlviGaG~~a~~va~~L~~~g~~~I~V~nRt~~ra~~La~~~~~~~~~~~~~l~~~l~~aDiVI~aT~a~---~ 254 (414)
T PRK13940 178 NISSKNVLIIGAGQTGELLFRHVTALAPKQIMLANRTIEKAQKITSAFRNASAHYLSELPQLIKKADIIIAAVNVL---E 254 (414)
T ss_pred CccCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHhcCCeEecHHHHHHHhccCCEEEECcCCC---C
Confidence 4789999999999999999999999995 79999987522 2233333 3333 4567789999999998743 4
Q ss_pred ccccHHHHhcCCCCcEEEEcC
Q 006864 299 KIFNDETFAKMKKGVRIVNVA 319 (628)
Q Consensus 299 ~li~~~~l~~mk~gailIN~a 319 (628)
.+|..+.+. .+.-++||.|
T Consensus 255 ~vi~~~~~~--~~~~~~iDLa 273 (414)
T PRK13940 255 YIVTCKYVG--DKPRVFIDIS 273 (414)
T ss_pred eeECHHHhC--CCCeEEEEeC
Confidence 556654432 1223555554
|
|
| >PLN02477 glutamate dehydrogenase | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.045 Score=60.46 Aligned_cols=107 Identities=29% Similarity=0.329 Sum_probs=72.8
Q ss_pred eeeecCCeEEEEecChhHHHHHHHHHcCCCEEEEE-CCC-------C-ChhHHHH----c-------CCcccCHHHHh-c
Q 006864 224 GVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAH-DPY-------A-PADKARA----V-------GVELVSFDQAL-A 282 (628)
Q Consensus 224 g~~l~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~-d~~-------~-~~~~a~~----~-------g~~~~sl~ell-~ 282 (628)
|.++.|+++.|.|+|++|+.+|+.|...|++|++. |.+ - +.+...+ . +.+.++.++++ .
T Consensus 201 g~~l~g~~VaIqGfGnVG~~~A~~L~e~GakVVaVsD~~G~iy~~~GLD~~~L~~~k~~~g~l~~~~~a~~i~~~e~l~~ 280 (410)
T PLN02477 201 GKSIAGQTFVIQGFGNVGSWAAQLIHEKGGKIVAVSDITGAVKNENGLDIPALRKHVAEGGGLKGFPGGDPIDPDDILVE 280 (410)
T ss_pred CCCccCCEEEEECCCHHHHHHHHHHHHcCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCchhccccceEecCccceec
Confidence 55789999999999999999999999999999953 432 1 2211111 0 11223444443 3
Q ss_pred cCCEEEEcCCCCccccccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhCCCe
Q 006864 283 TADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVV 338 (628)
Q Consensus 283 ~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~~vde~aL~~aL~~g~i 338 (628)
.||+++-|. ..+.|+++...+++ -.+|+-.|-+.+ ..++ -+.|++..|
T Consensus 281 ~~DvliP~A-----l~~~I~~~na~~i~-ak~I~egAN~p~-t~ea-~~~L~~rGI 328 (410)
T PLN02477 281 PCDVLIPAA-----LGGVINKENAADVK-AKFIVEAANHPT-DPEA-DEILRKKGV 328 (410)
T ss_pred cccEEeecc-----ccccCCHhHHHHcC-CcEEEeCCCCCC-CHHH-HHHHHHCCc
Confidence 789888765 46678888888875 457777788887 4444 466666554
|
|
| >PTZ00117 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.0059 Score=65.28 Aligned_cols=115 Identities=17% Similarity=0.197 Sum_probs=70.3
Q ss_pred ecCCeEEEEecChhHHHHHHHHHcCC-CEEEEECCCCChhHHHHc---------CC----cc-cCHHHHhccCCEEEEcC
Q 006864 227 LVGKTLAVMGFGKVGSEVARRAKGLG-MNVIAHDPYAPADKARAV---------GV----EL-VSFDQALATADFISLHM 291 (628)
Q Consensus 227 l~GktiGIIGlG~IG~~vA~~l~~~G-~~V~~~d~~~~~~~a~~~---------g~----~~-~sl~ell~~aDvV~l~~ 291 (628)
+..++|+|||.|.+|..+|..+...| .++..||..........+ +. .. .+++ .++.||+|+++.
T Consensus 3 ~~~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~~~~~g~~lDl~~~~~~~~~~~~i~~~~d~~-~l~~ADiVVita 81 (319)
T PTZ00117 3 VKRKKISMIGAGQIGSTVALLILQKNLGDVVLYDVIKGVPQGKALDLKHFSTLVGSNINILGTNNYE-DIKDSDVVVITA 81 (319)
T ss_pred CCCcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCCccchhHHHHHhhhccccCCCeEEEeCCCHH-HhCCCCEEEECC
Confidence 35679999999999999999998777 689999986532111111 11 11 2455 779999999999
Q ss_pred --CCCcc-cc--------cccc--HHHHhcCCCCcEEEEcCCCchhcHHHHHHHHh--CCCeeEEE
Q 006864 292 --PLNPT-TS--------KIFN--DETFAKMKKGVRIVNVARGGVIDEEALVRALD--SGVVAQAA 342 (628)
Q Consensus 292 --Plt~~-t~--------~li~--~~~l~~mk~gailIN~aRg~~vde~aL~~aL~--~g~i~ga~ 342 (628)
|-.+. ++ .++. .+.+....|.+++|+++-.-=+....+.+.-. ..++.|.+
T Consensus 82 g~~~~~g~~r~dll~~n~~i~~~i~~~i~~~~p~a~vivvsNP~di~t~~~~~~s~~p~~rviG~g 147 (319)
T PTZ00117 82 GVQRKEEMTREDLLTINGKIMKSVAESVKKYCPNAFVICVTNPLDCMVKVFQEKSGIPSNKICGMA 147 (319)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecChHHHHHHHHHHhhCCCcccEEEec
Confidence 54331 11 1110 12334456788888886544334444444332 34666655
|
|
| >PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.012 Score=69.56 Aligned_cols=113 Identities=21% Similarity=0.303 Sum_probs=80.8
Q ss_pred CeEEEEecChhHHHHHHHHHcCCCEEEEECCCCCh-hHH-----------HHcC-------------Ccc-cCHHHHhcc
Q 006864 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPA-DKA-----------RAVG-------------VEL-VSFDQALAT 283 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a-----------~~~g-------------~~~-~sl~ell~~ 283 (628)
++|+|||.|.||..+|..+...|++|..||+.... +++ .+.| ++. .++ +.++.
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 392 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPTLDY-AGFER 392 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCH-HHhcC
Confidence 68999999999999999999999999999987421 110 1111 111 145 45799
Q ss_pred CCEEEEcCCCCccccccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhC-CCeeEEEeeccC
Q 006864 284 ADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDS-GVVAQAALDVFT 347 (628)
Q Consensus 284 aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~~vde~aL~~aL~~-g~i~ga~lDV~~ 347 (628)
||+|+=++|-..+.+.-+-.+.=+.++++++|....++ +.-..|.+.++. .++ .++..|.
T Consensus 393 aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasNTSs--l~i~~la~~~~~p~r~--~g~Hff~ 453 (715)
T PRK11730 393 VDVVVEAVVENPKVKAAVLAEVEQKVREDTILASNTST--ISISLLAKALKRPENF--CGMHFFN 453 (715)
T ss_pred CCEEEecccCcHHHHHHHHHHHHhhCCCCcEEEEcCCC--CCHHHHHhhcCCCccE--EEEecCC
Confidence 99999999988888877777777779999988765544 444556666654 355 5556553
|
|
| >COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.0045 Score=68.03 Aligned_cols=92 Identities=27% Similarity=0.377 Sum_probs=67.3
Q ss_pred eecCCeEEEEecChhHHHHHHHHHcCC-CEEEEECCCCCh--hHHHHcCCcccC---HHHHhccCCEEEEcCCCCccccc
Q 006864 226 SLVGKTLAVMGFGKVGSEVARRAKGLG-MNVIAHDPYAPA--DKARAVGVELVS---FDQALATADFISLHMPLNPTTSK 299 (628)
Q Consensus 226 ~l~GktiGIIGlG~IG~~vA~~l~~~G-~~V~~~d~~~~~--~~a~~~g~~~~s---l~ell~~aDvV~l~~Plt~~t~~ 299 (628)
.|.++++.|||.|.||.-+|+.|.+.| .+|+..+|.... +.+.++|...+. +.+.+.++|+|+.++- ....
T Consensus 175 ~L~~~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT~erA~~La~~~~~~~~~l~el~~~l~~~DvVissTs---a~~~ 251 (414)
T COG0373 175 SLKDKKVLVIGAGEMGELVAKHLAEKGVKKITIANRTLERAEELAKKLGAEAVALEELLEALAEADVVISSTS---APHP 251 (414)
T ss_pred ccccCeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHhCCeeecHHHHHHhhhhCCEEEEecC---CCcc
Confidence 389999999999999999999999999 578888887532 346777866664 5567899999999863 3355
Q ss_pred cccHHHHhcC---CCCcEEEEcCC
Q 006864 300 IFNDETFAKM---KKGVRIVNVAR 320 (628)
Q Consensus 300 li~~~~l~~m---k~gailIN~aR 320 (628)
++..+.+... ++.-++||.|=
T Consensus 252 ii~~~~ve~a~~~r~~~livDiav 275 (414)
T COG0373 252 IITREMVERALKIRKRLLIVDIAV 275 (414)
T ss_pred ccCHHHHHHHHhcccCeEEEEecC
Confidence 6665554432 11246777653
|
|
| >COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.029 Score=60.74 Aligned_cols=160 Identities=19% Similarity=0.211 Sum_probs=115.0
Q ss_pred CeEEEEecChhHHHHHHHHHcCCCEEEEECCCCCh--hHHHHcC----C-cccCHHHH---hccCCEEEEcCCCCccccc
Q 006864 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPA--DKARAVG----V-ELVSFDQA---LATADFISLHMPLNPTTSK 299 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~--~~a~~~g----~-~~~sl~el---l~~aDvV~l~~Plt~~t~~ 299 (628)
..||+||||.||+.+|......|++|.+|+|.... +..++.+ + ...+++|+ ++.-.-|.+.+---.-...
T Consensus 4 ~~iGviGLaVMG~NLaLNi~~~G~~VavyNRt~~ktd~f~~~~~~~k~i~~~~sieefV~~Le~PRkI~lMVkAG~~VD~ 83 (473)
T COG0362 4 ADIGVIGLAVMGSNLALNIADHGYTVAVYNRTTEKTDEFLAERAKGKNIVPAYSIEEFVASLEKPRKILLMVKAGTPVDA 83 (473)
T ss_pred cceeeEehhhhhHHHHHHHHhcCceEEEEeCCHHHHHHHHHhCccCCCccccCcHHHHHHHhcCCceEEEEEecCCcHHH
Confidence 46999999999999999999999999999998632 2222222 1 22366665 4566777777643211122
Q ss_pred cccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhCCCeeEEEeeccCCCCCCCCCccccCCcEEEcCCCCCCcHHHHHH
Q 006864 300 IFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKEAQEG 379 (628)
Q Consensus 300 li~~~~l~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~ga~lDV~~~EP~~~~~~L~~~~nvilTPHig~~T~ea~~~ 379 (628)
. -++.+..|.+|=++||-+...--|...-.++|.+..|...|.-|.+.|--+-.. |-+ +=+-+.|+++.
T Consensus 84 ~-I~~L~p~Le~gDIiIDGGNs~y~DT~RR~~eL~~~Gi~FvG~GVSGGEeGA~~G-----PSi-----MpGG~~eay~~ 152 (473)
T COG0362 84 V-IEQLLPLLEKGDIIIDGGNSHYKDTIRRNKELSEKGILFVGMGVSGGEEGARHG-----PSI-----MPGGQKEAYEL 152 (473)
T ss_pred H-HHHHHhhcCCCCEEEeCCCcCCchHHHHHHHHHhcCCeEEeccccccccccccC-----CCc-----CCCCCHHHHHH
Confidence 2 356778899999999999988899999999999998888899999988432112 222 33678899988
Q ss_pred HHHHHHHHHHHHHcCCCCCCcc
Q 006864 380 VAIEIAEAVVGALRGELSATAI 401 (628)
Q Consensus 380 ~~~~~~~~i~~~l~g~~~~~~v 401 (628)
+. -+.+.|.+-..|++...-|
T Consensus 153 v~-pil~~IaAk~~g~pCc~~i 173 (473)
T COG0362 153 VA-PILTKIAAKVDGEPCCTWI 173 (473)
T ss_pred HH-HHHHHHHhhcCCCCceeeE
Confidence 75 4667777777777765444
|
|
| >TIGR02437 FadB fatty oxidation complex, alpha subunit FadB | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.015 Score=68.81 Aligned_cols=113 Identities=19% Similarity=0.288 Sum_probs=80.3
Q ss_pred CeEEEEecChhHHHHHHHHHcCCCEEEEECCCCCh-hHH-----------HHcC-------------Ccc-cCHHHHhcc
Q 006864 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPA-DKA-----------RAVG-------------VEL-VSFDQALAT 283 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a-----------~~~g-------------~~~-~sl~ell~~ 283 (628)
++|+|||.|.||..+|..+...|++|..||+.... ++. .+.| +.. .++ +.++.
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 392 (714)
T TIGR02437 314 KQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPTLSY-AGFDN 392 (714)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCH-HHhcC
Confidence 68999999999999999999999999999986421 110 0111 111 134 45799
Q ss_pred CCEEEEcCCCCccccccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhC-CCeeEEEeeccC
Q 006864 284 ADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDS-GVVAQAALDVFT 347 (628)
Q Consensus 284 aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~~vde~aL~~aL~~-g~i~ga~lDV~~ 347 (628)
||+|+=++|-.-+.+.-+-++.=+.++++++|-...++ ++-..|...++. .++ .++..|.
T Consensus 393 aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasnTS~--l~i~~ia~~~~~p~r~--ig~Hff~ 453 (714)
T TIGR02437 393 VDIVVEAVVENPKVKAAVLAEVEQHVREDAILASNTST--ISISLLAKALKRPENF--CGMHFFN 453 (714)
T ss_pred CCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCC--CCHHHHHhhcCCcccE--EEEecCC
Confidence 99999999988887777767776779999988765544 445556666654 355 5555554
|
Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399. |
| >CHL00100 ilvH acetohydroxyacid synthase small subunit | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.0021 Score=62.70 Aligned_cols=69 Identities=12% Similarity=0.267 Sum_probs=55.1
Q ss_pred cEEEEeccCCCCchhhHHhhhhcCCccccceEEeeeecCccEEEEEEeCCC--CCHHHHHHHhcccCcccc
Q 006864 559 NLILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDEE--PNQDSLKEIGKVHFVARI 627 (628)
Q Consensus 559 ~~Llv~~~D~PGvIa~V~~iL~~~~INIa~m~v~R~~~gg~Al~~i~vD~~--~~~~~l~~L~~l~~v~~v 627 (628)
|.+-+.-.|+||++.+|+++|.+.|+||.++.++.....+.+-|.+.+... .-+.+.++|.++-++.+|
T Consensus 3 ~~isvlv~n~PGVL~RIt~lFsrRg~NIesLsv~~t~~~~~sr~TIvv~~~~~~ieqL~kQL~KLidVl~V 73 (174)
T CHL00100 3 HTLSVLVEDESGVLTRIAGLFARRGFNIESLAVGPAEQKGISRITMVVPGDDRTIEQLTKQLYKLVNILKV 73 (174)
T ss_pred EEEEEEEeCcCCHHHHHHHHHHhCCCCeeEEEeeEcCCCCccEEEEEEECCHHHHHHHHHHHHHHhHhhEE
Confidence 567778899999999999999999999999999887777777777777653 334677777777666554
|
|
| >TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.0045 Score=62.05 Aligned_cols=90 Identities=18% Similarity=0.111 Sum_probs=63.6
Q ss_pred eeecCCeEEEEecChhHHHHHHHHHcCCCEEEEECCCCChhH--HHHc-CCccc--C-HHHHhccCCEEEEcCCCCcccc
Q 006864 225 VSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADK--ARAV-GVELV--S-FDQALATADFISLHMPLNPTTS 298 (628)
Q Consensus 225 ~~l~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~--a~~~-g~~~~--s-l~ell~~aDvV~l~~Plt~~t~ 298 (628)
.++.||++.|||.|.+|..-++.|..+|++|.+++|....+. ..+. .+++. + -.+.+..+|+|+.+... +
T Consensus 5 l~l~gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~~~~l~~l~~~~~i~~~~~~~~~~dl~~~~lVi~at~d-~--- 80 (205)
T TIGR01470 5 ANLEGRAVLVVGGGDVALRKARLLLKAGAQLRVIAEELESELTLLAEQGGITWLARCFDADILEGAFLVIAATDD-E--- 80 (205)
T ss_pred EEcCCCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHHcCCEEEEeCCCCHHHhCCcEEEEECCCC-H---
Confidence 578999999999999999999999999999999999765332 1122 23321 1 13456788998877542 2
Q ss_pred ccccHHHHhcCCCCcEEEEcC
Q 006864 299 KIFNDETFAKMKKGVRIVNVA 319 (628)
Q Consensus 299 ~li~~~~l~~mk~gailIN~a 319 (628)
-+|.......+.-.++||+.
T Consensus 81 -~ln~~i~~~a~~~~ilvn~~ 100 (205)
T TIGR01470 81 -ELNRRVAHAARARGVPVNVV 100 (205)
T ss_pred -HHHHHHHHHHHHcCCEEEEC
Confidence 13556666666666788864
|
This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms. |
| >TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)) | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.0063 Score=65.70 Aligned_cols=89 Identities=18% Similarity=0.225 Sum_probs=61.9
Q ss_pred eEEEEecChhHHHHHHHHHcCC--------CEEEEECCCC---ChhHHHH-----------cCCc------c-cCHHHHh
Q 006864 231 TLAVMGFGKVGSEVARRAKGLG--------MNVIAHDPYA---PADKARA-----------VGVE------L-VSFDQAL 281 (628)
Q Consensus 231 tiGIIGlG~IG~~vA~~l~~~G--------~~V~~~d~~~---~~~~a~~-----------~g~~------~-~sl~ell 281 (628)
+|+|||.|..|.++|..|...| .+|..|.+.. ....... .|++ . .++++++
T Consensus 1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i~at~dl~eal 80 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVAVPDLVEAA 80 (342)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHHHHHhcCCCccccCCCcCCCCeEEECCHHHHH
Confidence 5899999999999999998766 9999997621 1111100 0221 1 3789999
Q ss_pred ccCCEEEEcCCCCccccccccHHHHhcCCCCcEEEEcCCC
Q 006864 282 ATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARG 321 (628)
Q Consensus 282 ~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg 321 (628)
+.||+|++++|-. ..+.++ .+.-..++++..+|+++-|
T Consensus 81 ~~ADiIIlAVPs~-~i~~vl-~~l~~~l~~~~~iVs~tKG 118 (342)
T TIGR03376 81 KGADILVFVIPHQ-FLEGIC-KQLKGHVKPNARAISCIKG 118 (342)
T ss_pred hcCCEEEEECChH-HHHHHH-HHHHhhcCCCCEEEEEeCC
Confidence 9999999999932 233332 3333457889999999876
|
Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria. |
| >PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.0041 Score=55.85 Aligned_cols=63 Identities=21% Similarity=0.377 Sum_probs=48.8
Q ss_pred eEEEEecChhHHHHHHHHHcC--CCEEE-EECCCCCh--hHHHHcCCcc-cCHHHHhc--cCCEEEEcCCC
Q 006864 231 TLAVMGFGKVGSEVARRAKGL--GMNVI-AHDPYAPA--DKARAVGVEL-VSFDQALA--TADFISLHMPL 293 (628)
Q Consensus 231 tiGIIGlG~IG~~vA~~l~~~--G~~V~-~~d~~~~~--~~a~~~g~~~-~sl~ell~--~aDvV~l~~Pl 293 (628)
++||||+|.+|+.....++.. ++++. ++|+.... ..++..++.. .+++++++ +.|+|++++|-
T Consensus 2 ~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~I~tp~ 72 (120)
T PF01408_consen 2 RVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAEKYGIPVYTDLEELLADEDVDAVIIATPP 72 (120)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTSEEESSHHHHHHHTTESEEEEESSG
T ss_pred EEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHHhcccchhHHHHHHHhhcCCEEEEecCC
Confidence 689999999999999888766 56766 47887522 2235567764 48999998 79999999994
|
GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A .... |
| >cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.0051 Score=51.06 Aligned_cols=49 Identities=20% Similarity=0.215 Sum_probs=39.2
Q ss_pred EEEeccCCCCchhhHHhhhhcCCccccceEEeeeecCccEEEEEEeCCC
Q 006864 561 ILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDEE 609 (628)
Q Consensus 561 Llv~~~D~PGvIa~V~~iL~~~~INIa~m~v~R~~~gg~Al~~i~vD~~ 609 (628)
+.+.-+|+||++++|++.|+++|+||.+++......++.-.|.++++-+
T Consensus 2 i~v~g~D~~Giv~~it~~l~~~g~nI~~~~~~~~~~~~~f~~~~~~~~~ 50 (74)
T cd04875 2 LTLSCPDRPGIVAAVSGFLAEHGGNIVESDQFVDPDSGRFFMRVEFELE 50 (74)
T ss_pred EEEEcCCCCCHHHHHHHHHHHcCCCEEeeeeeecCCCCeEEEEEEEEeC
Confidence 4566799999999999999999999999998865455555566666654
|
This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains. |
| >cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.0066 Score=50.94 Aligned_cols=61 Identities=15% Similarity=0.177 Sum_probs=43.7
Q ss_pred EEEeccCCCCchhhHHhhhhcCCccccceEEeeee----cCccEEEEEEeCCCCC---HHHHHHHhcc
Q 006864 561 ILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTF----RRNHGIMAIGVDEEPN---QDSLKEIGKV 621 (628)
Q Consensus 561 Llv~~~D~PGvIa~V~~iL~~~~INIa~m~v~R~~----~gg~Al~~i~vD~~~~---~~~l~~L~~l 621 (628)
+.+.-+|+||++++|++.|+++|+||.+++..... ..+.-.|.+.++-+.. .++.+.|+.+
T Consensus 2 l~v~g~D~~Giv~~it~~l~~~~~nI~~~~~~~~~~~~~~~~~~~~~~~v~~p~~~~~~~l~~~l~~l 69 (81)
T cd04869 2 VEVVGNDRPGIVHEVTQFLAQRNINIEDLSTETYSAPMSGTPLFKAQATLALPAGTDLDALREELEEL 69 (81)
T ss_pred EEEEeCCCCCHHHHHHHHHHHcCCCeEEeEeeeecCCCCCcceEEEEEEEecCCCCCHHHHHHHHHHH
Confidence 34567899999999999999999999999997654 2345566667765432 2444445443
|
This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in |
| >TIGR02992 ectoine_eutC ectoine utilization protein EutC | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.0095 Score=63.85 Aligned_cols=85 Identities=15% Similarity=0.214 Sum_probs=61.9
Q ss_pred CCeEEEEecChhHHHHHHHHH-cCCC-EEEEECCCCCh--hHHHH----cCCcc---cCHHHHhccCCEEEEcCCCCccc
Q 006864 229 GKTLAVMGFGKVGSEVARRAK-GLGM-NVIAHDPYAPA--DKARA----VGVEL---VSFDQALATADFISLHMPLNPTT 297 (628)
Q Consensus 229 GktiGIIGlG~IG~~vA~~l~-~~G~-~V~~~d~~~~~--~~a~~----~g~~~---~sl~ell~~aDvV~l~~Plt~~t 297 (628)
.++++|||.|.+|+..++.+. .++. +|.+|+++... ..+.. .+++. .++++.+.+||+|+.++|..
T Consensus 129 ~~~v~iiGaG~qA~~~~~al~~~~~i~~v~V~~R~~~~a~~~a~~~~~~~g~~v~~~~~~~~av~~aDiVvtaT~s~--- 205 (326)
T TIGR02992 129 SSVVAIFGAGMQARLQLEALTLVRDIRSARIWARDSAKAEALALQLSSLLGIDVTAATDPRAAMSGADIIVTTTPSE--- 205 (326)
T ss_pred CcEEEEECCCHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhccCCEEEEecCCC---
Confidence 579999999999999999997 4774 69999987532 12222 24432 36899999999999999854
Q ss_pred cccccHHHHhcCCCCcEEEEcC
Q 006864 298 SKIFNDETFAKMKKGVRIVNVA 319 (628)
Q Consensus 298 ~~li~~~~l~~mk~gailIN~a 319 (628)
..++..+. +|+|+.+..++
T Consensus 206 ~p~i~~~~---l~~g~~i~~vg 224 (326)
T TIGR02992 206 TPILHAEW---LEPGQHVTAMG 224 (326)
T ss_pred CcEecHHH---cCCCcEEEeeC
Confidence 35665543 68888776554
|
Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423). |
| >PRK06718 precorrin-2 dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.0061 Score=60.95 Aligned_cols=90 Identities=17% Similarity=0.230 Sum_probs=60.1
Q ss_pred eeeecCCeEEEEecChhHHHHHHHHHcCCCEEEEECCCCChhHH--HHcC-Cccc--CH-HHHhccCCEEEEcCCCCccc
Q 006864 224 GVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKA--RAVG-VELV--SF-DQALATADFISLHMPLNPTT 297 (628)
Q Consensus 224 g~~l~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a--~~~g-~~~~--sl-~ell~~aDvV~l~~Plt~~t 297 (628)
..++.||++.|||.|.+|...++.|...|.+|.+++|....+.. ...+ +... .+ ++.+..+|+|+.++.-. +.
T Consensus 5 ~l~l~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~~~~~l~~l~~~~~i~~~~~~~~~~~l~~adlViaaT~d~-el 83 (202)
T PRK06718 5 MIDLSNKRVVIVGGGKVAGRRAITLLKYGAHIVVISPELTENLVKLVEEGKIRWKQKEFEPSDIVDAFLVIAATNDP-RV 83 (202)
T ss_pred EEEcCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHhCCCEEEEecCCChhhcCCceEEEEcCCCH-HH
Confidence 45899999999999999999999999999999999987543321 1112 2221 12 34578899888877632 22
Q ss_pred cccccHHHHhcCCCCcEEEEcC
Q 006864 298 SKIFNDETFAKMKKGVRIVNVA 319 (628)
Q Consensus 298 ~~li~~~~l~~mk~gailIN~a 319 (628)
|......++.+ +++|++
T Consensus 84 ----N~~i~~~a~~~-~lvn~~ 100 (202)
T PRK06718 84 ----NEQVKEDLPEN-ALFNVI 100 (202)
T ss_pred ----HHHHHHHHHhC-CcEEEC
Confidence 33333334444 467764
|
|
| >TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.017 Score=68.42 Aligned_cols=113 Identities=17% Similarity=0.230 Sum_probs=80.8
Q ss_pred CeEEEEecChhHHHHHHHHHcCCCEEEEECCCCCh-hHH-----------HHcC-------------Ccc-cCHHHHhcc
Q 006864 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPA-DKA-----------RAVG-------------VEL-VSFDQALAT 283 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a-----------~~~g-------------~~~-~sl~ell~~ 283 (628)
++|+|||.|.||..+|..+...|++|+.||+.... ++. .+.| +.. .+++ .+++
T Consensus 336 ~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~ 414 (737)
T TIGR02441 336 KTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPTLDYS-GFKN 414 (737)
T ss_pred cEEEEECCCHhHHHHHHHHHhCCCcEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHH-Hhcc
Confidence 68999999999999999999999999999976421 110 0111 111 2454 5799
Q ss_pred CCEEEEcCCCCccccccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhC-CCeeEEEeeccC
Q 006864 284 ADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDS-GVVAQAALDVFT 347 (628)
Q Consensus 284 aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~~vde~aL~~aL~~-g~i~ga~lDV~~ 347 (628)
||+|+=++|-+.+.+.-+-++.=+.++++++|....+ -++-..|...++. .++ .++..|.
T Consensus 415 aDlViEAv~E~l~~K~~vf~~l~~~~~~~~ilasNTS--sl~i~~la~~~~~p~r~--ig~Hff~ 475 (737)
T TIGR02441 415 ADMVIEAVFEDLSLKHKVIKEVEAVVPPHCIIASNTS--ALPIKDIAAVSSRPEKV--IGMHYFS 475 (737)
T ss_pred CCeehhhccccHHHHHHHHHHHHhhCCCCcEEEEcCC--CCCHHHHHhhcCCccce--EEEeccC
Confidence 9999999998888887777777777999998865433 3555566676654 355 6666664
|
Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16). |
| >PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.0061 Score=65.01 Aligned_cols=90 Identities=18% Similarity=0.269 Sum_probs=60.3
Q ss_pred eEEEEecChhHHHHHHHHHcCCCEEEEECCCCC-hhHHHHc--------CC------cc-cCHHHHh-ccCCEEEEcCCC
Q 006864 231 TLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAP-ADKARAV--------GV------EL-VSFDQAL-ATADFISLHMPL 293 (628)
Q Consensus 231 tiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~--------g~------~~-~sl~ell-~~aDvV~l~~Pl 293 (628)
+|+|||.|.+|..+|..|...|.+|..|+++.. .+...+. +. .. .++++.+ ..+|+|++++|-
T Consensus 2 kI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~Dliiiavks 81 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSKKISVNLWGRNHTTFESINTKRKNLKYLPTCHLPDNISVKSAIDEVLSDNATCIILAVPT 81 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHCCCeEEEEecCHHHHHHHHHcCCCcccCCCCcCCCCeEEeCCHHHHHhCCCCEEEEEeCH
Confidence 699999999999999999999999999998642 1111110 11 11 2566666 589999999993
Q ss_pred CccccccccHHHHh-cCCCCcEEEEcCCCc
Q 006864 294 NPTTSKIFNDETFA-KMKKGVRIVNVARGG 322 (628)
Q Consensus 294 t~~t~~li~~~~l~-~mk~gailIN~aRg~ 322 (628)
. ++...+. +... .++++..+|.+.-|=
T Consensus 82 ~-~~~~~l~-~l~~~~l~~~~~vv~~~nGi 109 (326)
T PRK14620 82 Q-QLRTICQ-QLQDCHLKKNTPILICSKGI 109 (326)
T ss_pred H-HHHHHHH-HHHHhcCCCCCEEEEEEcCe
Confidence 2 3443332 2223 566777777776653
|
|
| >cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.0045 Score=52.10 Aligned_cols=46 Identities=15% Similarity=0.210 Sum_probs=36.9
Q ss_pred EEEeccCCCCchhhHHhhhhcCCccccceEEeeeecCccEEEEEEeCC
Q 006864 561 ILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDE 608 (628)
Q Consensus 561 Llv~~~D~PGvIa~V~~iL~~~~INIa~m~v~R~~~gg~Al~~i~vD~ 608 (628)
|.+.-+|+||++++|++.|+++|.||-+++... .++.-.|++.++-
T Consensus 4 ltv~g~Dr~GiVa~vs~~la~~g~nI~d~~q~~--~~~~F~m~~~~~~ 49 (77)
T cd04893 4 ISALGTDRPGILNELTRAVSESGCNILDSRMAI--LGTEFALTMLVEG 49 (77)
T ss_pred EEEEeCCCChHHHHHHHHHHHcCCCEEEceeeE--EcCEEEEEEEEEe
Confidence 445679999999999999999999999999987 4455556555553
|
This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int |
| >PRK08618 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.0095 Score=63.82 Aligned_cols=87 Identities=25% Similarity=0.239 Sum_probs=63.1
Q ss_pred cCCeEEEEecChhHHHHHHHHH-cCCC-EEEEECCCCCh--hHHH----HcCCc---ccCHHHHhccCCEEEEcCCCCcc
Q 006864 228 VGKTLAVMGFGKVGSEVARRAK-GLGM-NVIAHDPYAPA--DKAR----AVGVE---LVSFDQALATADFISLHMPLNPT 296 (628)
Q Consensus 228 ~GktiGIIGlG~IG~~vA~~l~-~~G~-~V~~~d~~~~~--~~a~----~~g~~---~~sl~ell~~aDvV~l~~Plt~~ 296 (628)
..++++|||.|.+|+..++.+. ..+. +|.+||+.... +.+. ..+++ ..++++++++||+|++++|..
T Consensus 126 ~~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~aDiVi~aT~s~-- 203 (325)
T PRK08618 126 DAKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQSKFNTEIYVVNSADEAIEEADIIVTVTNAK-- 203 (325)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEccCCC--
Confidence 3689999999999999887764 4564 78889987522 1122 22443 237899999999999999844
Q ss_pred ccccccHHHHhcCCCCcEEEEcCCC
Q 006864 297 TSKIFNDETFAKMKKGVRIVNVARG 321 (628)
Q Consensus 297 t~~li~~~~l~~mk~gailIN~aRg 321 (628)
..++. +.+|+|+.++.++.-
T Consensus 204 -~p~i~----~~l~~G~hV~~iGs~ 223 (325)
T PRK08618 204 -TPVFS----EKLKKGVHINAVGSF 223 (325)
T ss_pred -CcchH----HhcCCCcEEEecCCC
Confidence 34553 456999999988753
|
|
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.0076 Score=64.66 Aligned_cols=64 Identities=30% Similarity=0.385 Sum_probs=47.2
Q ss_pred CCeEEEEecChhHHHHHHHHHcCCCEEEEECCCCC-hhHHHHcCCccc-C------HHHHhccCCEEEEcCC
Q 006864 229 GKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAP-ADKARAVGVELV-S------FDQALATADFISLHMP 292 (628)
Q Consensus 229 GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~g~~~~-s------l~ell~~aDvV~l~~P 292 (628)
|++++|+|+|-.|..-.+.++++|++|+++|+... .+.++++|...+ + ++.+-+.+|+++.++|
T Consensus 167 G~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv~ 238 (339)
T COG1064 167 GKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDTVG 238 (339)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECCC
Confidence 88999999999999999999999999999999863 455677775321 1 1222223666666665
|
|
| >PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.021 Score=67.61 Aligned_cols=113 Identities=14% Similarity=0.144 Sum_probs=80.2
Q ss_pred CeEEEEecChhHHHHHHHHH-cCCCEEEEECCCCCh-hHH-----------HHcC-------------Ccc-cCHHHHhc
Q 006864 230 KTLAVMGFGKVGSEVARRAK-GLGMNVIAHDPYAPA-DKA-----------RAVG-------------VEL-VSFDQALA 282 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~-~~G~~V~~~d~~~~~-~~a-----------~~~g-------------~~~-~sl~ell~ 282 (628)
++|+|||.|.||..+|..+. ..|++|..||+.... +++ .+.| +.. .++ +.++
T Consensus 310 ~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~ 388 (708)
T PRK11154 310 NKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGTTDY-RGFK 388 (708)
T ss_pred cEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEeCCh-HHhc
Confidence 68999999999999999988 779999999986421 111 0111 111 134 4679
Q ss_pred cCCEEEEcCCCCccccccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhC-CCeeEEEeeccC
Q 006864 283 TADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDS-GVVAQAALDVFT 347 (628)
Q Consensus 283 ~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~~vde~aL~~aL~~-g~i~ga~lDV~~ 347 (628)
.||+|+=++|-+.+.+.-+-++.=+.++|+++|....++ +.-..|.+.+.. .++ +++..|.
T Consensus 389 ~aDlViEav~E~~~~K~~v~~~le~~~~~~~ilasnTS~--l~i~~la~~~~~p~r~--ig~Hff~ 450 (708)
T PRK11154 389 HADVVIEAVFEDLALKQQMVAEVEQNCAPHTIFASNTSS--LPIGQIAAAAARPEQV--IGLHYFS 450 (708)
T ss_pred cCCEEeecccccHHHHHHHHHHHHhhCCCCcEEEECCCC--CCHHHHHHhcCcccce--EEEecCC
Confidence 999999999988888877767776779999999766544 444556666643 355 5666553
|
|
| >cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.0066 Score=49.35 Aligned_cols=62 Identities=18% Similarity=0.326 Sum_probs=46.0
Q ss_pred cEEEEeccCCCCchhhHHhhhhcCCccccceEEeeeecCccEEEEEEeCCC-CCHHHHHHHhc
Q 006864 559 NLILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDEE-PNQDSLKEIGK 620 (628)
Q Consensus 559 ~~Llv~~~D~PGvIa~V~~iL~~~~INIa~m~v~R~~~gg~Al~~i~vD~~-~~~~~l~~L~~ 620 (628)
+.+-+..+|+||.+++++.+|+++|+||..+...+...+..+.+.+.++.+ ..+.+++.|++
T Consensus 2 ~~~~v~~~d~~G~L~~l~~~l~~~~i~i~~~~~~~~~~~~~~~~~i~v~~~~~~~~~~~~L~~ 64 (69)
T cd04909 2 YDLYVDVPDEPGVIAEVTQILGDAGISIKNIEILEIREGIGGILRISFKTQEDRERAKEILKE 64 (69)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHcCCCceeeEeEEeecCCcEEEEEEECCHHHHHHHHHHHHH
Confidence 456677899999999999999999999999988775433356666777532 23466666665
|
The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains. |
| >smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.0054 Score=55.80 Aligned_cols=88 Identities=18% Similarity=0.303 Sum_probs=54.2
Q ss_pred eEEEEe-cChhHHHHHHHHHcC-CCEEEEE-CCCC-ChhHHHHcC--Cc-----ccCHHHH-hccCCEEEEcCCCCcccc
Q 006864 231 TLAVMG-FGKVGSEVARRAKGL-GMNVIAH-DPYA-PADKARAVG--VE-----LVSFDQA-LATADFISLHMPLNPTTS 298 (628)
Q Consensus 231 tiGIIG-lG~IG~~vA~~l~~~-G~~V~~~-d~~~-~~~~a~~~g--~~-----~~sl~el-l~~aDvV~l~~Plt~~t~ 298 (628)
++||+| .|.+|+.+++.++.. ++++.+. ++.. ........+ +. ..+.+++ ..++|+|++|+|-.. +.
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~~~~~l~av~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvV~~~~~~~~-~~ 79 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEHPDFEVVALAASARSAGKRVSEAGPHLKGEVVLELEPEDFEELAVDIVFLALPHGV-SK 79 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcCCCceEEEEEechhhcCcCHHHHCcccccccccccccCChhhcCCCEEEEcCCcHH-HH
Confidence 589999 599999999999874 7787766 4221 111111111 11 1121222 258999999999543 23
Q ss_pred ccccHHHHhcCCCCcEEEEcCC
Q 006864 299 KIFNDETFAKMKKGVRIVNVAR 320 (628)
Q Consensus 299 ~li~~~~l~~mk~gailIN~aR 320 (628)
..+. .....+++|.++|+++.
T Consensus 80 ~~~~-~~~~~~~~g~~viD~s~ 100 (122)
T smart00859 80 EIAP-LLPKAAEAGVKVIDLSS 100 (122)
T ss_pred HHHH-HHHhhhcCCCEEEECCc
Confidence 2221 23455799999999973
|
The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase. |
| >PRK13301 putative L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.011 Score=61.32 Aligned_cols=101 Identities=18% Similarity=0.224 Sum_probs=63.0
Q ss_pred CeEEEEecChhHHHHHHHHHcC---CCEEEE-ECCCCChhHHHHcCCccc-CHHHH-hccCCEEEEcCCCCccccccccH
Q 006864 230 KTLAVMGFGKVGSEVARRAKGL---GMNVIA-HDPYAPADKARAVGVELV-SFDQA-LATADFISLHMPLNPTTSKIFND 303 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~---G~~V~~-~d~~~~~~~a~~~g~~~~-sl~el-l~~aDvV~l~~Plt~~t~~li~~ 303 (628)
++|||||+|.||+.+++.+..- ++++.+ ||+...........+..+ +++++ ..+.|+|+=|.. ++.. -+
T Consensus 3 ~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~~~~~~~~~~~~~~~~~~l~~ll~~~~DlVVE~A~--~~av---~e 77 (267)
T PRK13301 3 HRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNAADLPPALAGRVALLDGLPGLLAWRPDLVVEAAG--QQAI---AE 77 (267)
T ss_pred eEEEEECccHHHHHHHHHHhcCCCCceEEEEEecCCHHHHHHhhccCcccCCHHHHhhcCCCEEEECCC--HHHH---HH
Confidence 6899999999999999998753 355544 565432211111124444 69997 578999998886 2222 22
Q ss_pred HHHhcCCCCcEEEEcCCCchhcH---HHHHHHHhC
Q 006864 304 ETFAKMKKGVRIVNVARGGVIDE---EALVRALDS 335 (628)
Q Consensus 304 ~~l~~mk~gailIN~aRg~~vde---~aL~~aL~~ 335 (628)
--..-|+.|.-++=.+=|.+.|. +.|.++.+.
T Consensus 78 ~~~~iL~~g~dlvv~SvGALaD~~~~~~l~~~A~~ 112 (267)
T PRK13301 78 HAEGCLTAGLDMIICSAGALADDALRARLIAAAEA 112 (267)
T ss_pred HHHHHHhcCCCEEEEChhHhcCHHHHHHHHHHHHh
Confidence 22233566777777777888874 344444443
|
|
| >TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2 | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.0048 Score=61.62 Aligned_cols=92 Identities=25% Similarity=0.325 Sum_probs=64.2
Q ss_pred eeecCCeEEEEecChhHHHHHHHHHcCCC-EEEEECCCC---C-hhH----HHHcC-----------------Ccc----
Q 006864 225 VSLVGKTLAVMGFGKVGSEVARRAKGLGM-NVIAHDPYA---P-ADK----ARAVG-----------------VEL---- 274 (628)
Q Consensus 225 ~~l~GktiGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~---~-~~~----a~~~g-----------------~~~---- 274 (628)
..|..++|+|+|+|.+|..+|..|...|. ++..+|+.. + ..+ ..+.| ++.
T Consensus 17 ~~L~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~~iG~~Ka~~~~~~l~~inp~~~i~~~~ 96 (200)
T TIGR02354 17 QKLEQATVAICGLGGLGSNVAINLARAGIGKLILVDFDVVEPSNLNRQQYKASQVGEPKTEALKENISEINPYTEIEAYD 96 (200)
T ss_pred HHHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCCEEcccccccccCChhhCCCHHHHHHHHHHHHHCCCCEEEEee
Confidence 35788999999999999999999999998 699998751 0 000 01111 110
Q ss_pred -----cCHHHHhccCCEEEEcCCCCccccccccHHHHhcCCCCcEEEE
Q 006864 275 -----VSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVN 317 (628)
Q Consensus 275 -----~sl~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN 317 (628)
.+++++++++|+|+-+ .-+.+++.++.......++...++..
T Consensus 97 ~~i~~~~~~~~~~~~DlVi~a-~Dn~~~k~~l~~~~~~~~~~~~ii~~ 143 (200)
T TIGR02354 97 EKITEENIDKFFKDADIVCEA-FDNAEAKAMLVNAVLEKYKDKYLIAA 143 (200)
T ss_pred eeCCHhHHHHHhcCCCEEEEC-CCCHHHHHHHHHHHHHHcCCCcEEEE
Confidence 0245677888888887 45777888888887777776665553
|
Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter. |
| >TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.022 Score=67.24 Aligned_cols=113 Identities=12% Similarity=0.147 Sum_probs=79.1
Q ss_pred CeEEEEecChhHHHHHHHHH-cCCCEEEEECCCCCh-hHH-----------HHcC-------------Cccc-CHHHHhc
Q 006864 230 KTLAVMGFGKVGSEVARRAK-GLGMNVIAHDPYAPA-DKA-----------RAVG-------------VELV-SFDQALA 282 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~-~~G~~V~~~d~~~~~-~~a-----------~~~g-------------~~~~-sl~ell~ 282 (628)
++|+|||.|.||..+|..+. ..|++|..||+.... +.+ .+.+ +... ++ +.++
T Consensus 305 ~~v~ViGaG~mG~~iA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~ 383 (699)
T TIGR02440 305 KKVGILGGGLMGGGIASVTATKAGIPVRIKDINPQGINNALKYAWKLLDKGVKRRHMTPAERDNQMALITGTTDY-RGFK 383 (699)
T ss_pred cEEEEECCcHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeEEeCCh-HHhc
Confidence 58999999999999999987 589999999987421 110 0111 1122 45 4679
Q ss_pred cCCEEEEcCCCCccccccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhC-CCeeEEEeeccC
Q 006864 283 TADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDS-GVVAQAALDVFT 347 (628)
Q Consensus 283 ~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~~vde~aL~~aL~~-g~i~ga~lDV~~ 347 (628)
.||+|+=++|-..+.+.-+-.+.=+.++++++|....++ +.-..|.++++. .++ .++..|.
T Consensus 384 ~adlViEav~E~l~~K~~v~~~l~~~~~~~~ilasnTS~--l~i~~la~~~~~p~r~--~g~Hffn 445 (699)
T TIGR02440 384 DVDIVIEAVFEDLALKHQMVKDIEQECAAHTIFASNTSS--LPIGQIAAAASRPENV--IGLHYFS 445 (699)
T ss_pred cCCEEEEeccccHHHHHHHHHHHHhhCCCCcEEEeCCCC--CCHHHHHHhcCCcccE--EEEecCC
Confidence 999999999988888877767777778999888765544 344455666644 356 5556553
|
Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog. |
| >PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1 | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.0031 Score=59.25 Aligned_cols=108 Identities=17% Similarity=0.226 Sum_probs=72.0
Q ss_pred EEEEecChhHHHHHHHHHcCCCEEEEECCCCChhHHHHcCCccc--------------C-HHHHhccCCEEEEcCCCCcc
Q 006864 232 LAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELV--------------S-FDQALATADFISLHMPLNPT 296 (628)
Q Consensus 232 iGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~--------------s-l~ell~~aDvV~l~~Plt~~ 296 (628)
|.|+|.|.||.-+|.+|+..|.+|..+++....+..++.|+... + ..+....+|+|++++.-. +
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv~vKa~-~ 79 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSPRLEAIKEQGLTITGPDGDETVQPPIVISAPSADAGPYDLVIVAVKAY-Q 79 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHHHHHHHHHHCEEEEETTEEEEEEEEEEESSHGHHHSTESEEEE-SSGG-G
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccccHHhhhheeEEEEecccceecccccccCcchhccCCCcEEEEEeccc-c
Confidence 68999999999999999999999999987652233344454221 1 124678899999998733 3
Q ss_pred ccccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhCCCeeEEE
Q 006864 297 TSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAA 342 (628)
Q Consensus 297 t~~li~~~~l~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~ga~ 342 (628)
+...+.. .-..+++++.++-.--| +-.++.+.+.+...++.++.
T Consensus 80 ~~~~l~~-l~~~~~~~t~iv~~qNG-~g~~~~l~~~~~~~~v~~g~ 123 (151)
T PF02558_consen 80 LEQALQS-LKPYLDPNTTIVSLQNG-MGNEEVLAEYFPRPRVLGGV 123 (151)
T ss_dssp HHHHHHH-HCTGEETTEEEEEESSS-SSHHHHHHCHSTGSGEEEEE
T ss_pred hHHHHHH-HhhccCCCcEEEEEeCC-CCcHHHHHHHcCCCcEEEEE
Confidence 4444433 44446667677766544 56677777777566665543
|
1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B .... |
| >PRK06046 alanine dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.013 Score=62.96 Aligned_cols=85 Identities=18% Similarity=0.295 Sum_probs=61.0
Q ss_pred CCeEEEEecChhHHHHHHHHHc-CCC-EEEEECCCCCh-hH-HHH----cCC--c-ccCHHHHhccCCEEEEcCCCCccc
Q 006864 229 GKTLAVMGFGKVGSEVARRAKG-LGM-NVIAHDPYAPA-DK-ARA----VGV--E-LVSFDQALATADFISLHMPLNPTT 297 (628)
Q Consensus 229 GktiGIIGlG~IG~~vA~~l~~-~G~-~V~~~d~~~~~-~~-a~~----~g~--~-~~sl~ell~~aDvV~l~~Plt~~t 297 (628)
-+++||||.|.+|+..++.+.. .+. +|.+||+.... +. +.. .++ . ..+++++++ +|+|++++|.+
T Consensus 129 ~~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~-aDiVv~aTps~--- 204 (326)
T PRK06046 129 SKVVGIIGAGNQARTQLLALSEVFDLEEVRVYDRTKSSAEKFVERMSSVVGCDVTVAEDIEEACD-CDILVTTTPSR--- 204 (326)
T ss_pred CCEEEEECCcHHHHHHHHHHHhhCCceEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhh-CCEEEEecCCC---
Confidence 3789999999999999998874 454 56778988532 11 222 243 2 237899987 99999999854
Q ss_pred cccccHHHHhcCCCCcEEEEcCC
Q 006864 298 SKIFNDETFAKMKKGVRIVNVAR 320 (628)
Q Consensus 298 ~~li~~~~l~~mk~gailIN~aR 320 (628)
..++..+. +|+|+.|..++.
T Consensus 205 ~P~~~~~~---l~~g~hV~~iGs 224 (326)
T PRK06046 205 KPVVKAEW---IKEGTHINAIGA 224 (326)
T ss_pred CcEecHHH---cCCCCEEEecCC
Confidence 46666654 589998888874
|
|
| >PRK12549 shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.012 Score=62.00 Aligned_cols=69 Identities=22% Similarity=0.242 Sum_probs=50.8
Q ss_pred eecCCeEEEEecChhHHHHHHHHHcCCC-EEEEECCCCChh--HHHHcC-----Cccc---CHHHHhccCCEEEEcCCCC
Q 006864 226 SLVGKTLAVMGFGKVGSEVARRAKGLGM-NVIAHDPYAPAD--KARAVG-----VELV---SFDQALATADFISLHMPLN 294 (628)
Q Consensus 226 ~l~GktiGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~~~~--~a~~~g-----~~~~---sl~ell~~aDvV~l~~Plt 294 (628)
.+.+|++.|||.|..|++++..|...|+ +|..+|+..... .+..++ .... ++.+.++++|+|+.++|.-
T Consensus 124 ~~~~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~~ka~~la~~l~~~~~~~~~~~~~~~~~~~~~aDiVInaTp~G 203 (284)
T PRK12549 124 DASLERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDPARAAALADELNARFPAARATAGSDLAAALAAADGLVHATPTG 203 (284)
T ss_pred CccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhCCCeEEEeccchHhhhCCCCEEEECCcCC
Confidence 3567999999999999999999999997 799999875221 122211 1111 3455778899999999854
|
|
| >cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB) | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.0082 Score=50.10 Aligned_cols=46 Identities=20% Similarity=0.254 Sum_probs=33.8
Q ss_pred EEEeccCCCCchhhHHhhhhcCCccccceEEeeeecCccEEEEEEeCC
Q 006864 561 ILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDE 608 (628)
Q Consensus 561 Llv~~~D~PGvIa~V~~iL~~~~INIa~m~v~R~~~gg~Al~~i~vD~ 608 (628)
+-+.-+|+||+++.|+..|+++|+||.+++..... +.-.|.+.++-
T Consensus 2 vtv~G~DrpGiv~~vt~~la~~~~nI~dl~~~~~~--~~f~~~~~v~~ 47 (75)
T cd04870 2 ITVTGPDRPGLTSALTEVLAAHGVRILDVGQAVIH--GRLSLGILVQI 47 (75)
T ss_pred EEEEcCCCCCHHHHHHHHHHHCCCCEEecccEEEc--CeeEEEEEEEc
Confidence 34567999999999999999999999999754432 33344444443
|
The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains. |
| >COG2150 Predicted regulator of amino acid metabolism, contains ACT domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.0065 Score=57.81 Aligned_cols=64 Identities=14% Similarity=0.275 Sum_probs=55.5
Q ss_pred eccCCCCchhhHHhhhhcCCccccceEEeeeecCccEEEEEEeCCCCCHHHHHHHhcccCcccc
Q 006864 564 RQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDEEPNQDSLKEIGKVHFVARI 627 (628)
Q Consensus 564 ~~~D~PGvIa~V~~iL~~~~INIa~m~v~R~~~gg~Al~~i~vD~~~~~~~l~~L~~l~~v~~v 627 (628)
.-.+.||+++.|.++++++||+|-.....--+-.+++...+=+++++|.+++.+|+++++|.++
T Consensus 101 ~~~~~pgi~A~V~~~iak~gi~Irqi~~~dpe~~~e~~l~IVte~~iP~~li~el~~i~gVk~i 164 (167)
T COG2150 101 EDARYPGILAGVASLIAKRGISIRQIISEDPELQEEPKLTIVTERPIPGDLIDELKKIDGVKKI 164 (167)
T ss_pred ccCCCccHHHHHHHHHHHcCceEEEEecCCcccCCCceEEEEEeccCCHHHHHHHhcccCceeE
Confidence 3567899999999999999999988766544456788888888999999999999999999875
|
|
| >PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.0067 Score=65.38 Aligned_cols=90 Identities=21% Similarity=0.280 Sum_probs=60.9
Q ss_pred CeEEEEecChhHHHHHHHHHcCCCEEEEECCCCCh-hHHHHc---------CC------cc-cCHHHHhccCCEEEEcCC
Q 006864 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPA-DKARAV---------GV------EL-VSFDQALATADFISLHMP 292 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~~---------g~------~~-~sl~ell~~aDvV~l~~P 292 (628)
++|+|||.|.+|..+|..|...| +|..|.++... +...+. +. .. .++++.++.+|+|++++|
T Consensus 8 mkI~IiGaGa~G~alA~~La~~g-~v~l~~~~~~~~~~i~~~~~~~~~l~~~~~l~~~i~~t~d~~~a~~~aDlVilavp 86 (341)
T PRK12439 8 PKVVVLGGGSWGTTVASICARRG-PTLQWVRSAETADDINDNHRNSRYLGNDVVLSDTLRATTDFAEAANCADVVVMGVP 86 (341)
T ss_pred CeEEEECCCHHHHHHHHHHHHCC-CEEEEeCCHHHHHHHHhcCCCcccCCCCcccCCCeEEECCHHHHHhcCCEEEEEeC
Confidence 57999999999999999999888 57777654211 111111 11 11 267788999999999999
Q ss_pred CCccccccccHHHHhcCCCCcEEEEcCCCc
Q 006864 293 LNPTTSKIFNDETFAKMKKGVRIVNVARGG 322 (628)
Q Consensus 293 lt~~t~~li~~~~l~~mk~gailIN~aRg~ 322 (628)
. ..++..+ ++.-..++++..+|++.-|=
T Consensus 87 s-~~~~~vl-~~i~~~l~~~~~vIsl~kGi 114 (341)
T PRK12439 87 S-HGFRGVL-TELAKELRPWVPVVSLVKGL 114 (341)
T ss_pred H-HHHHHHH-HHHHhhcCCCCEEEEEEeCC
Confidence 3 2344333 23334578888899988753
|
|
| >cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.0074 Score=49.75 Aligned_cols=60 Identities=17% Similarity=0.124 Sum_probs=43.9
Q ss_pred EEeccCCCCchhhHHhhhhcCCccccceEEeeee-cCccEEEEEEeCCCCC---HHHHHHHhcc
Q 006864 562 LCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTF-RRNHGIMAIGVDEEPN---QDSLKEIGKV 621 (628)
Q Consensus 562 lv~~~D~PGvIa~V~~iL~~~~INIa~m~v~R~~-~gg~Al~~i~vD~~~~---~~~l~~L~~l 621 (628)
-+..+|+||.++.++++|+++|+||-.+...|.. ..+.....+.++-+.+ ++++++|++.
T Consensus 3 ~v~~~d~pG~L~~l~~~i~~~g~nI~~i~~~~~~~~~~~~~~~v~v~~e~~~~~~~i~~~L~~~ 66 (72)
T cd04884 3 TFLLEDKPGTLKPVVDTLREFNARIISILTAFEDAPDGMRRVFIRVTPMDRSKENELIEELKAK 66 (72)
T ss_pred EEEecCCCccHHHHHHHHHHCCCeEEEEEeccccCCCCccEEEEEEEEecchHHHHHHHHHhCc
Confidence 3567899999999999999999999999888752 3344455666554444 3666666554
|
This CD includes the C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This protein has two N-terminal tandem CBS domains and a single C-terminal ACT domain. The CBS domain is found in a wide range of proteins, often in tandem arrangements and together with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Members of this CD belong to the superfamily of ACT regulatory domains. |
| >PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.012 Score=64.12 Aligned_cols=90 Identities=18% Similarity=0.302 Sum_probs=60.2
Q ss_pred CeEEEEecChhHHHHHHHHHcCC-------CEEEEECCCCC------hhHHHH--------cCCc-------ccCHHHHh
Q 006864 230 KTLAVMGFGKVGSEVARRAKGLG-------MNVIAHDPYAP------ADKARA--------VGVE-------LVSFDQAL 281 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~G-------~~V~~~d~~~~------~~~a~~--------~g~~-------~~sl~ell 281 (628)
++|+|||.|..|.++|..|..-| .+|..|.+... .+...+ .|++ ..++++++
T Consensus 12 ~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~N~~ylp~~~Lp~ni~~tsdl~eav 91 (365)
T PTZ00345 12 LKVSVIGSGNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIVEGEKLSDIINTKHENVKYLPGIKLPDNIVAVSDLKEAV 91 (365)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEecccccchHHHHHHHhcCCCcccCCCCcCCCceEEecCHHHHH
Confidence 58999999999999999997554 78888865532 111111 0121 12688999
Q ss_pred ccCCEEEEcCCCCccccccccHHHHh--cCCCCcEEEEcCCC
Q 006864 282 ATADFISLHMPLNPTTSKIFNDETFA--KMKKGVRIVNVARG 321 (628)
Q Consensus 282 ~~aDvV~l~~Plt~~t~~li~~~~l~--~mk~gailIN~aRg 321 (628)
+.||+|++++|-. ..+..+ ++.-. .+++++++|+++-|
T Consensus 92 ~~aDiIvlAVPsq-~l~~vl-~~l~~~~~l~~~~~iIS~aKG 131 (365)
T PTZ00345 92 EDADLLIFVIPHQ-FLESVL-SQIKENNNLKKHARAISLTKG 131 (365)
T ss_pred hcCCEEEEEcChH-HHHHHH-HHhccccccCCCCEEEEEeCC
Confidence 9999999999932 233332 22222 45667899998765
|
|
| >KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.012 Score=62.06 Aligned_cols=89 Identities=19% Similarity=0.286 Sum_probs=58.5
Q ss_pred cCCeEEEEecChhHHHHHHHHHcCCCEEEEECCCC--ChhHHHHcCCccc--C------HHHHhccCCEEEEcCCCCccc
Q 006864 228 VGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA--PADKARAVGVELV--S------FDQALATADFISLHMPLNPTT 297 (628)
Q Consensus 228 ~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~--~~~~a~~~g~~~~--s------l~ell~~aDvV~l~~Plt~~t 297 (628)
-|+.+||+|+|-+|.--.+.+++|||+|+++|... .++..+.+|.+.. + .+++...-|.++-+++.- .
T Consensus 181 pG~~vgI~GlGGLGh~aVq~AKAMG~rV~vis~~~~kkeea~~~LGAd~fv~~~~d~d~~~~~~~~~dg~~~~v~~~--a 258 (360)
T KOG0023|consen 181 PGKWVGIVGLGGLGHMAVQYAKAMGMRVTVISTSSKKKEEAIKSLGADVFVDSTEDPDIMKAIMKTTDGGIDTVSNL--A 258 (360)
T ss_pred CCcEEEEecCcccchHHHHHHHHhCcEEEEEeCCchhHHHHHHhcCcceeEEecCCHHHHHHHHHhhcCcceeeeec--c
Confidence 79999999999999988899999999999999875 3344455776521 1 344555566665555422 1
Q ss_pred cccccHHHHhcCCCCcEEEEcC
Q 006864 298 SKIFNDETFAKMKKGVRIVNVA 319 (628)
Q Consensus 298 ~~li~~~~l~~mk~gailIN~a 319 (628)
.+-+ +..+..||++..+|-++
T Consensus 259 ~~~~-~~~~~~lk~~Gt~V~vg 279 (360)
T KOG0023|consen 259 EHAL-EPLLGLLKVNGTLVLVG 279 (360)
T ss_pred ccch-HHHHHHhhcCCEEEEEe
Confidence 2222 33455566666655553
|
|
| >cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.0074 Score=48.55 Aligned_cols=58 Identities=16% Similarity=0.289 Sum_probs=44.5
Q ss_pred EeccCCCCchhhHHhhhhcCCccccceEEeeee---cCccEEEEEEeCCCCCH---HHHHHHhc
Q 006864 563 CRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTF---RRNHGIMAIGVDEEPNQ---DSLKEIGK 620 (628)
Q Consensus 563 v~~~D~PGvIa~V~~iL~~~~INIa~m~v~R~~---~gg~Al~~i~vD~~~~~---~~l~~L~~ 620 (628)
+..+|+||.++.|++.++++++||..+...+.. ..+.+.+.+.++-.-.+ +++++|++
T Consensus 3 v~~~d~~G~L~~i~~~i~~~~~nI~~i~~~~~~~~~~~~~~~~~i~v~~~~~~~l~~l~~~l~~ 66 (73)
T cd04886 3 VELPDRPGQLAKLLAVIAEAGANIIEVSHDRAFKTLPLGEVEVELTLETRGAEHIEEIIAALRE 66 (73)
T ss_pred EEeCCCCChHHHHHHHHHHcCCCEEEEEEEeccCCCCCceEEEEEEEEeCCHHHHHHHHHHHHH
Confidence 556899999999999999999999999987643 25677777777654333 66666665
|
This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains. |
| >TIGR00670 asp_carb_tr aspartate carbamoyltransferase | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.085 Score=56.06 Aligned_cols=93 Identities=23% Similarity=0.320 Sum_probs=64.5
Q ss_pred eecCCeEEEEecC---hhHHHHHHHHHcCCCEEEEECCCC---Chh---HHHHcCCcc---cCHHHHhccCCEEEEcCCC
Q 006864 226 SLVGKTLAVMGFG---KVGSEVARRAKGLGMNVIAHDPYA---PAD---KARAVGVEL---VSFDQALATADFISLHMPL 293 (628)
Q Consensus 226 ~l~GktiGIIGlG---~IG~~vA~~l~~~G~~V~~~d~~~---~~~---~a~~~g~~~---~sl~ell~~aDvV~l~~Pl 293 (628)
.+.|++|+++|-| ++..+++..+..|||+|....|.. +.+ .+++.|... .++++.++.||+|..-- .
T Consensus 147 ~l~g~~va~vGD~~~~~v~~Sl~~~~a~~g~~v~~~~P~~~~~~~~~~~~~~~~G~~v~~~~d~~~a~~~aDvvyt~~-~ 225 (301)
T TIGR00670 147 RLDGLKIALVGDLKYGRTVHSLAEALTRFGVEVYLISPEELRMPKEILEELKAKGIKVRETESLEEVIDEADVLYVTR-I 225 (301)
T ss_pred CCCCCEEEEEccCCCCcHHHHHHHHHHHcCCEEEEECCccccCCHHHHHHHHHcCCEEEEECCHHHHhCCCCEEEECC-c
Confidence 3789999999995 999999999999999999988753 222 233445432 38999999999998732 1
Q ss_pred Ccc------------ccccccHHHHhcCCCCcEEEEcC
Q 006864 294 NPT------------TSKIFNDETFAKMKKGVRIVNVA 319 (628)
Q Consensus 294 t~~------------t~~li~~~~l~~mk~gailIN~a 319 (628)
..+ ...-++++.++.+|++++|.-|.
T Consensus 226 ~~er~~~~~~~~~~~~~y~v~~ell~~a~~~ai~mHcl 263 (301)
T TIGR00670 226 QKERFPDPEEYEKYKGSYGITLERLEAAKKGVIIMHPL 263 (301)
T ss_pred cccccCCHHHHHHHhcCCeECHHHHhhcCCCCEEECCC
Confidence 111 02234556666666666666553
|
Ornithine carbamoyltransferases are in the same superfamily and form an outgroup. |
| >COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.016 Score=63.24 Aligned_cols=108 Identities=25% Similarity=0.373 Sum_probs=76.9
Q ss_pred eeeecCCeEEEEecChhHHHHHHHHHcCCCEEEEECCCCC---------h-----------hHHHHcCCcccCHHHHhc-
Q 006864 224 GVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAP---------A-----------DKARAVGVELVSFDQALA- 282 (628)
Q Consensus 224 g~~l~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~---------~-----------~~a~~~g~~~~sl~ell~- 282 (628)
+..+.|+|+.|=|+|++|+..|+.|...|.+|++.|.+.. . ......+.+.++-++++.
T Consensus 202 g~~l~G~rVaVQG~GNVg~~aa~~l~~~GAkvva~sds~g~i~~~~Gld~~~l~~~~~~~~~v~~~~ga~~i~~~e~~~~ 281 (411)
T COG0334 202 GDDLEGARVAVQGFGNVGQYAAEKLHELGAKVVAVSDSKGGIYDEDGLDVEALLELKERRGSVAEYAGAEYITNEELLEV 281 (411)
T ss_pred CCCcCCCEEEEECccHHHHHHHHHHHHcCCEEEEEEcCCCceecCCCCCHHHHHHHhhhhhhHHhhcCceEccccccccc
Confidence 4459999999999999999999999999999998754322 0 111222445555577776
Q ss_pred cCCEEEEcCCCCccccccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhCCCe
Q 006864 283 TADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVV 338 (628)
Q Consensus 283 ~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~~vde~aL~~aL~~g~i 338 (628)
.||+.+=|. +.+.|+.+...++|.. +|+--|.|.+-.+. --..++.|.+
T Consensus 282 ~cDIl~PcA-----~~n~I~~~na~~l~ak-~V~EgAN~P~t~eA-~~i~~erGIl 330 (411)
T COG0334 282 DCDILIPCA-----LENVITEDNADQLKAK-IVVEGANGPTTPEA-DEILLERGIL 330 (411)
T ss_pred cCcEEcccc-----cccccchhhHHHhhhc-EEEeccCCCCCHHH-HHHHHHCCCE
Confidence 699886654 6788888888888876 88888888776433 3333355655
|
|
| >PRK01713 ornithine carbamoyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.058 Score=58.13 Aligned_cols=94 Identities=19% Similarity=0.271 Sum_probs=64.8
Q ss_pred eecCCeEEEEecC--hhHHHHHHHHHcCCCEEEEECCCC--Chh--------HHHHcCCc--c-cCHHHHhccCCEEEEc
Q 006864 226 SLVGKTLAVMGFG--KVGSEVARRAKGLGMNVIAHDPYA--PAD--------KARAVGVE--L-VSFDQALATADFISLH 290 (628)
Q Consensus 226 ~l~GktiGIIGlG--~IG~~vA~~l~~~G~~V~~~d~~~--~~~--------~a~~~g~~--~-~sl~ell~~aDvV~l~ 290 (628)
.+.|++|++||-+ ++..+++..+..||++|.+..|.. +.+ .++..|.. . .++++.+++||+|..-
T Consensus 153 ~l~gl~ia~vGD~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~p~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvVyt~ 232 (334)
T PRK01713 153 PLSEISYVYIGDARNNMGNSLLLIGAKLGMDVRICAPKALLPEASLVEMCEKFAKESGARITVTDDIDKAVKGVDFVHTD 232 (334)
T ss_pred CcCCcEEEEECCCccCHHHHHHHHHHHcCCEEEEECCchhcCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEc
Confidence 4789999999986 678888999999999999988753 221 12234533 2 4899999999999873
Q ss_pred C----CCCcc---------ccccccHHHHhcC-CCCcEEEEcC
Q 006864 291 M----PLNPT---------TSKIFNDETFAKM-KKGVRIVNVA 319 (628)
Q Consensus 291 ~----Plt~~---------t~~li~~~~l~~m-k~gailIN~a 319 (628)
. ....+ ....++++.++++ |++++|.-|.
T Consensus 233 ~w~sm~~~~~~~~~~~~~~~~y~v~~ell~~a~k~~aivmH~l 275 (334)
T PRK01713 233 VWVSMGEPLETWGERIKLLMPYQVTPELMKRTGNPKVKFMHCL 275 (334)
T ss_pred ceeecccchhhHHHHHHhccCCcCCHHHHhccCCCCCEEECCC
Confidence 2 10000 1233567777765 6778887774
|
|
| >COG4747 ACT domain-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.022 Score=51.55 Aligned_cols=114 Identities=15% Similarity=0.293 Sum_probs=74.6
Q ss_pred ccccchHhHHhhcCceEEEEEeecCCCCCCCCceEEEEEEecccccceeeCCCcEEEEEEEEECCeeEEEEECceeEEee
Q 006864 476 INLVNADFTAKQKGLRISEERVVADSSPEFPIDSIQVQLSNVDSKFAAAVSENGEISIEGKVKFGIPHLTRVGSFGVDAS 555 (628)
Q Consensus 476 vnlvNA~~iAke~GI~i~~~~~~~~~~~~~~~ntv~v~l~~~~~~~~~~~~~~~~~~v~Gt~~gG~~~I~~Idgf~Vd~~ 555 (628)
-++.++....++.||+++--...+.+ .| .-+++.+. ++..+-. ..+=-||-|..
T Consensus 15 GRL~~~~~~L~eagINiRA~tiAdt~---dF-GIiRmvV~--~~d~A~~-------------------~Lee~gF~Vr~- 68 (142)
T COG4747 15 GRLASVANKLKEAGINIRAFTIADTG---DF-GIIRMVVD--RPDEAHS-------------------VLEEAGFTVRE- 68 (142)
T ss_pred chHHHHHHHHHHcCCceEEEEecccc---Cc-ceEEEEcC--ChHHHHH-------------------HHHHCCcEEEe-
Confidence 47888899999999999865433221 34 34444443 1111111 01112344433
Q ss_pred cCCcEEEEeccCCCCchhhHHhhhhcCCccccceEEeeeecCccEEEEEEeCCCCCHHHHHHHhc
Q 006864 556 LEGNLILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDEEPNQDSLKEIGK 620 (628)
Q Consensus 556 ~~~~~Llv~~~D~PGvIa~V~~iL~~~~INIa~m~v~R~~~gg~Al~~i~vD~~~~~~~l~~L~~ 620 (628)
...|-+...|+||-+.+|..+|++++||+.++--+-.++ ..|+.++.+++- ++.++.|++
T Consensus 69 --~dVlaVEmeD~PG~l~~I~~vl~d~diNldYiYAFv~ek-~KAlli~r~ed~--d~~~~aLed 128 (142)
T COG4747 69 --TDVLAVEMEDVPGGLSRIAEVLGDADINLDYIYAFVTEK-QKALLIVRVEDI--DRAIKALED 128 (142)
T ss_pred --eeEEEEEecCCCCcHHHHHHHHhhcCcCceeeeeeeecC-ceEEEEEEhhHH--HHHHHHHHH
Confidence 245677889999999999999999999999998876666 899999998753 334444443
|
|
| >PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.022 Score=63.76 Aligned_cols=108 Identities=23% Similarity=0.259 Sum_probs=71.9
Q ss_pred ecCCeEEEEecChhHHHHHHHHHcCCCEEEEECCCCCh------hHHHHcCCccc---CHHHHhccCCEEEEcCCCCccc
Q 006864 227 LVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPA------DKARAVGVELV---SFDQALATADFISLHMPLNPTT 297 (628)
Q Consensus 227 l~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~------~~a~~~g~~~~---sl~ell~~aDvV~l~~Plt~~t 297 (628)
+.||+++|+|+|..|.++|+.|+..|++|.++|..... ......|+... ...+.+.++|+|+.. |--+.+
T Consensus 12 ~~~~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~dlVV~S-pgi~~~ 90 (458)
T PRK01710 12 IKNKKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKSEEELGEVSNELKELGVKLVLGENYLDKLDGFDVIFKT-PSMRID 90 (458)
T ss_pred hcCCeEEEEcccHHHHHHHHHHHHCCCEEEEECCCCCccchHHHHHHHhCCCEEEeCCCChHHhccCCEEEEC-CCCCCC
Confidence 56899999999999999999999999999999976421 12344566543 234556889999886 533332
Q ss_pred ccc-----------ccHH-HHhc-CCCCcEEEEcCCCchhcHHHHHHHHhC
Q 006864 298 SKI-----------FNDE-TFAK-MKKGVRIVNVARGGVIDEEALVRALDS 335 (628)
Q Consensus 298 ~~l-----------i~~~-~l~~-mk~gailIN~aRg~~vde~aL~~aL~~ 335 (628)
... +++- .+.+ .+.-.+-|-=+.|+.--.+-+...|+.
T Consensus 91 ~p~~~~a~~~~i~i~s~~e~~~~~~~~~vIaITGTnGKTTT~~ll~~iL~~ 141 (458)
T PRK01710 91 SPELVKAKEEGAYITSEMEEFIKYCPAKVFGVTGSDGKTTTTTLIYEMLKE 141 (458)
T ss_pred chHHHHHHHcCCcEEechHHhhhhcCCCEEEEECCCCHHHHHHHHHHHHHh
Confidence 222 2221 2222 233345555577888888877787764
|
|
| >PRK00676 hemA glutamyl-tRNA reductase; Validated | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.014 Score=62.87 Aligned_cols=90 Identities=12% Similarity=0.046 Sum_probs=58.8
Q ss_pred eecCCeEEEEecChhHHHHHHHHHcCCC-EEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEcCCCCccccccccHH
Q 006864 226 SLVGKTLAVMGFGKVGSEVARRAKGLGM-NVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDE 304 (628)
Q Consensus 226 ~l~GktiGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~~~~~a~~~g~~~~sl~ell~~aDvV~l~~Plt~~t~~li~~~ 304 (628)
.+.||++.|||.|.||+-+|+.|...|. +|++.+|........... ...-+.+.++|+|+.+.--|......+..+
T Consensus 171 ~l~~k~vLvIGaGem~~l~a~~L~~~g~~~i~v~nRt~~~~~~~~~~---~~~~~~~~~~DvVIs~t~~Tas~~p~i~~~ 247 (338)
T PRK00676 171 KSKKASLLFIGYSEINRKVAYYLQRQGYSRITFCSRQQLTLPYRTVV---REELSFQDPYDVIFFGSSESAYAFPHLSWE 247 (338)
T ss_pred CccCCEEEEEcccHHHHHHHHHHHHcCCCEEEEEcCCccccchhhhh---hhhhhcccCCCEEEEcCCcCCCCCceeeHH
Confidence 4889999999999999999999999995 688888875211111000 011144578999998732233334455655
Q ss_pred HHhcCCCCcEEEEcC
Q 006864 305 TFAKMKKGVRIVNVA 319 (628)
Q Consensus 305 ~l~~mk~gailIN~a 319 (628)
.++..++ -++||.|
T Consensus 248 ~~~~~~~-r~~iDLA 261 (338)
T PRK00676 248 SLADIPD-RIVFDFN 261 (338)
T ss_pred HHhhccC-cEEEEec
Confidence 5554332 3777765
|
|
| >PRK00779 ornithine carbamoyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.061 Score=57.24 Aligned_cols=127 Identities=20% Similarity=0.211 Sum_probs=80.0
Q ss_pred HHhcCceEEcCCCCChhhHHHHHHHHHHHHHHchhHHHHHHHcCcccccccceeeecCCeEEEEec-ChhHHHHHHHHHc
Q 006864 172 ATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGKTLAVMGF-GKVGSEVARRAKG 250 (628)
Q Consensus 172 a~~~GI~V~n~p~~~~~avAE~~l~l~L~~~R~i~~~~~~~~~g~W~~~~~~g~~l~GktiGIIGl-G~IG~~vA~~l~~ 250 (628)
+...+|+|+|+-+....++- +++=++.+.++ .| .+.|++|+++|- +++.++++..+..
T Consensus 116 a~~~~vPVINag~~~~HPtQ--aL~Dl~Ti~e~------------------~g-~l~gl~i~~vGd~~~v~~Sl~~~l~~ 174 (304)
T PRK00779 116 AEYSTVPVINGLTDLSHPCQ--ILADLLTIYEH------------------RG-SLKGLKVAWVGDGNNVANSLLLAAAL 174 (304)
T ss_pred HHhCCCCEEeCCCCCCChHH--HHHHHHHHHHH------------------hC-CcCCcEEEEEeCCCccHHHHHHHHHH
Confidence 44567999999765433332 22222333221 12 367899999998 7899999999999
Q ss_pred CCCEEEEECCCC--C-hhH----HHHcCCc--c-cCHHHHhccCCEEEEcC----CCCc---c-----ccccccHHHHhc
Q 006864 251 LGMNVIAHDPYA--P-ADK----ARAVGVE--L-VSFDQALATADFISLHM----PLNP---T-----TSKIFNDETFAK 308 (628)
Q Consensus 251 ~G~~V~~~d~~~--~-~~~----a~~~g~~--~-~sl~ell~~aDvV~l~~----Plt~---~-----t~~li~~~~l~~ 308 (628)
+|++|....|.. . .+. ++..|.. . .++++.++.||+|..-. .... + -..-++++.++.
T Consensus 175 ~g~~v~~~~P~~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvy~~~w~~~~~~~~~~~~~~~~~~y~v~~~~l~~ 254 (304)
T PRK00779 175 LGFDLRVATPKGYEPDPEIVEKIAKETGASIEVTHDPKEAVKGADVVYTDVWVSMGQEAEAEERLKAFAPYQVNEELMAL 254 (304)
T ss_pred cCCEEEEECCcccCCCHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEecCccccccchhHHHHHHHhcccCCCHHHHHh
Confidence 999999988753 2 121 2334533 2 38999999999998742 1000 0 123345666666
Q ss_pred CCCCcEEEEcC
Q 006864 309 MKKGVRIVNVA 319 (628)
Q Consensus 309 mk~gailIN~a 319 (628)
+|++++|.-|.
T Consensus 255 ~~~~~ivmHpl 265 (304)
T PRK00779 255 AKPDAIFMHCL 265 (304)
T ss_pred cCCCeEEecCC
Confidence 66666666653
|
|
| >COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.0087 Score=63.77 Aligned_cols=119 Identities=21% Similarity=0.267 Sum_probs=75.7
Q ss_pred CeEEEEecChhHHHHHHHHHcCCCEEEEECCCCChhH-HHH-------c-CC------c-ccCHHHHhccCCEEEEcCCC
Q 006864 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADK-ARA-------V-GV------E-LVSFDQALATADFISLHMPL 293 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~-a~~-------~-g~------~-~~sl~ell~~aDvV~l~~Pl 293 (628)
++|.|||.|.-|.++|+.|...|.+|..|.+...... ... + |+ . ..++.++++.||+|++.+|.
T Consensus 2 ~kI~ViGaGswGTALA~~la~ng~~V~lw~r~~~~~~~i~~~~~N~~yLp~i~lp~~l~at~Dl~~a~~~ad~iv~avPs 81 (329)
T COG0240 2 MKIAVIGAGSWGTALAKVLARNGHEVRLWGRDEEIVAEINETRENPKYLPGILLPPNLKATTDLAEALDGADIIVIAVPS 81 (329)
T ss_pred ceEEEEcCChHHHHHHHHHHhcCCeeEEEecCHHHHHHHHhcCcCccccCCccCCcccccccCHHHHHhcCCEEEEECCh
Confidence 5899999999999999999999999998876421100 000 0 11 1 23799999999999999993
Q ss_pred CccccccccHHHHhcCCCCcEEEEcCCCchhc-----HHHHHHHHhCCCeeE-----EEeeccCCCC
Q 006864 294 NPTTSKIFNDETFAKMKKGVRIVNVARGGVID-----EEALVRALDSGVVAQ-----AALDVFTEEP 350 (628)
Q Consensus 294 t~~t~~li~~~~l~~mk~gailIN~aRg~~vd-----e~aL~~aL~~g~i~g-----a~lDV~~~EP 350 (628)
. -.+..+. +.-..+++++.+|+|+-|=-.+ .+.+.+.|....++. .+-+|...-|
T Consensus 82 ~-~~r~v~~-~l~~~l~~~~~iv~~sKGie~~t~~l~seii~e~l~~~~~~vLSGPs~A~EVa~g~p 146 (329)
T COG0240 82 Q-ALREVLR-QLKPLLLKDAIIVSATKGLEPETGRLLSEIIEEELPDNPIAVLSGPSFAKEVAQGLP 146 (329)
T ss_pred H-HHHHHHH-HHhhhccCCCeEEEEeccccCCCcchHHHHHHHHcCCCeEEEEECccHHHHHhcCCC
Confidence 2 2333322 2224568999999998653332 233344444444422 2334555555
|
|
| >cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.0084 Score=46.71 Aligned_cols=64 Identities=9% Similarity=0.293 Sum_probs=48.7
Q ss_pred EeccCCCCchhhHHhhhhcCCccccceEEeeeecCccEEEEEEeCCCC---CHHHHHHHhcccCcccc
Q 006864 563 CRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDEEP---NQDSLKEIGKVHFVARI 627 (628)
Q Consensus 563 v~~~D~PGvIa~V~~iL~~~~INIa~m~v~R~~~gg~Al~~i~vD~~~---~~~~l~~L~~l~~v~~v 627 (628)
+...|+||.++.+.+.|+++++||..+...... ++.+.+.+.++.+- -..+++.|+.+++|..+
T Consensus 3 v~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~v 69 (71)
T cd04876 3 VEAIDRPGLLADITTVIAEEKINILSVNTRTDD-DGLATIRLTLEVRDLEHLARIMRKLRQIPGVIDV 69 (71)
T ss_pred EEEeccCcHHHHHHHHHHhCCCCEEEEEeEECC-CCEEEEEEEEEECCHHHHHHHHHHHhCCCCcEEE
Confidence 456799999999999999999999999886533 35566666665332 23678888888888765
|
ACT_RelA-SpoT: the ACT domain found C-terminal of the RelA/SpoT domains. Enzymes of the Rel/Spo family enable bacteria to survive prolonged periods of nutrient limitation by controlling guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp) production and subsequent rRNA repression (stringent response). Both the synthesis of (p)ppGpp from ATP and GDP(GTP), and its hydrolysis to GDP(GTP) and pyrophosphate, are catalyzed by Rel/Spo proteins. In Escherichia coli and its close relatives, the metabolism of (p)ppGpp is governed by two homologous proteins, RelA and SpoT. The RelA protein catalyzes (p)ppGpp synthesis in a reaction requiring its binding to ribosomes bearing codon-specified uncharged tRNA. The major role of the SpoT protein is the breakdown of (p)ppGpp by a manganese-dependent (p)ppGpp pyrophosphohydrolase activity. Although the stringent response appears to be tightly regulated by these two enzymes i |
| >PRK08291 ectoine utilization protein EutC; Validated | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.018 Score=61.89 Aligned_cols=85 Identities=20% Similarity=0.229 Sum_probs=61.0
Q ss_pred CCeEEEEecChhHHHHHHHHHc-CC-CEEEEECCCCCh-h-HHH----HcCCc---ccCHHHHhccCCEEEEcCCCCccc
Q 006864 229 GKTLAVMGFGKVGSEVARRAKG-LG-MNVIAHDPYAPA-D-KAR----AVGVE---LVSFDQALATADFISLHMPLNPTT 297 (628)
Q Consensus 229 GktiGIIGlG~IG~~vA~~l~~-~G-~~V~~~d~~~~~-~-~a~----~~g~~---~~sl~ell~~aDvV~l~~Plt~~t 297 (628)
.++++|||.|.+|+..+..+.. .+ -+|.+|+++... + .+. ..++. ..++++++.+||+|+.++|..
T Consensus 132 ~~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R~~~~a~~l~~~~~~~~g~~v~~~~d~~~al~~aDiVi~aT~s~--- 208 (330)
T PRK08291 132 ASRAAVIGAGEQARLQLEALTLVRPIREVRVWARDAAKAEAYAADLRAELGIPVTVARDVHEAVAGADIIVTTTPSE--- 208 (330)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHhhccCceEEEeCCHHHHHccCCEEEEeeCCC---
Confidence 5799999999999999888874 55 479999987532 1 112 12443 237899999999999999854
Q ss_pred cccccHHHHhcCCCCcEEEEcC
Q 006864 298 SKIFNDETFAKMKKGVRIVNVA 319 (628)
Q Consensus 298 ~~li~~~~l~~mk~gailIN~a 319 (628)
..++..+. +|+|+.+..++
T Consensus 209 ~p~i~~~~---l~~g~~v~~vg 227 (330)
T PRK08291 209 EPILKAEW---LHPGLHVTAMG 227 (330)
T ss_pred CcEecHHH---cCCCceEEeeC
Confidence 35665543 57887766544
|
|
| >PRK06719 precorrin-2 dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.015 Score=55.77 Aligned_cols=69 Identities=19% Similarity=0.241 Sum_probs=50.7
Q ss_pred ceeeecCCeEEEEecChhHHHHHHHHHcCCCEEEEECCCCChhHHHHcC-Cccc--CH-HHHhccCCEEEEcCC
Q 006864 223 VGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVG-VELV--SF-DQALATADFISLHMP 292 (628)
Q Consensus 223 ~g~~l~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g-~~~~--sl-~ell~~aDvV~l~~P 292 (628)
...+|.|+++.|||.|.+|...++.|...|++|.+++|....+.. +++ +... .+ ++-+.++|+|+.++.
T Consensus 7 ~~l~l~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp~~~~~l~-~l~~i~~~~~~~~~~dl~~a~lViaaT~ 79 (157)
T PRK06719 7 LMFNLHNKVVVIIGGGKIAYRKASGLKDTGAFVTVVSPEICKEMK-ELPYITWKQKTFSNDDIKDAHLIYAATN 79 (157)
T ss_pred eEEEcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCccCHHHH-hccCcEEEecccChhcCCCceEEEECCC
Confidence 356899999999999999999999999999999999887654432 232 1111 12 234677888887764
|
|
| >TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.021 Score=63.04 Aligned_cols=89 Identities=24% Similarity=0.382 Sum_probs=64.7
Q ss_pred eecCCeEEEEec----------ChhHHHHHHHHHcCCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEcCCCCc
Q 006864 226 SLVGKTLAVMGF----------GKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNP 295 (628)
Q Consensus 226 ~l~GktiGIIGl----------G~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~sl~ell~~aDvV~l~~Plt~ 295 (628)
.+.|++|+|+|+ ..-...+++.|...|.+|.+|||..........+ ...++++.++.||+|+++.+-.
T Consensus 310 ~~~~~~v~vlGlafK~~t~d~r~sp~~~~~~~L~~~g~~v~~~DP~~~~~~~~~~~-~~~~~~~~~~~ad~~v~~t~~~- 387 (411)
T TIGR03026 310 PLKGKTVLILGLAFKPNTDDVRESPALDIIELLKEKGAKVKAYDPLVPEEEVKGLP-LIDDLEEALKGADALVILTDHD- 387 (411)
T ss_pred cccCCEEEEEeeEecCCCCccccChHHHHHHHHHhCCCEEEEECCCCChhhhhhcc-cCCCHHHHHhCCCEEEEecCCH-
Confidence 589999999998 4467899999999999999999997543322222 1347889999999999998733
Q ss_pred cccccccHHHHhc-CCCCcEEEEc
Q 006864 296 TTSKIFNDETFAK-MKKGVRIVNV 318 (628)
Q Consensus 296 ~t~~li~~~~l~~-mk~gailIN~ 318 (628)
+-+. ++-+.+.. |+ ..+++|+
T Consensus 388 ~~~~-~~~~~~~~~~~-~~~v~D~ 409 (411)
T TIGR03026 388 EFKD-LDLEKIKDLMK-GKVVVDT 409 (411)
T ss_pred HHhc-cCHHHHHHhcC-CCEEEeC
Confidence 2222 35444544 54 5578874
|
All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively. |
| >PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.015 Score=59.87 Aligned_cols=106 Identities=31% Similarity=0.455 Sum_probs=70.5
Q ss_pred eecCCeEEEEecChhHHHHHHHHHcCCCEEEEE--------CCCC-ChhHH----HHcCC-------------cccCHH-
Q 006864 226 SLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAH--------DPYA-PADKA----RAVGV-------------ELVSFD- 278 (628)
Q Consensus 226 ~l~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~--------d~~~-~~~~a----~~~g~-------------~~~sl~- 278 (628)
++.|+++.|-|+|++|+.+|+.|...|++|++. ||.- +.+.. .+.+. +.++-+
T Consensus 29 ~l~g~~v~IqGfG~VG~~~a~~l~~~Ga~vv~vsD~~G~i~~~~Gld~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 108 (244)
T PF00208_consen 29 SLEGKRVAIQGFGNVGSHAARFLAELGAKVVAVSDSSGAIYDPDGLDVEELLRIKEERGSRVDDYPLESPDGAEYIPNDD 108 (244)
T ss_dssp SSTTCEEEEEESSHHHHHHHHHHHHTTEEEEEEEESSEEEEETTEEHHHHHHHHHHHHSSHSTTGTHTCSSTSEEECHHC
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEecCceEEEcCCCchHHHHHHHHHHhCCcccccccccccceeEecccc
Confidence 699999999999999999999999999999875 5542 11111 11222 122332
Q ss_pred HHh-ccCCEEEEcCCCCccccccccHHHHh-cCCCCcEEEEc-CCCchhcHHHHHHHHhCCCe
Q 006864 279 QAL-ATADFISLHMPLNPTTSKIFNDETFA-KMKKGVRIVNV-ARGGVIDEEALVRALDSGVV 338 (628)
Q Consensus 279 ell-~~aDvV~l~~Plt~~t~~li~~~~l~-~mk~gailIN~-aRg~~vde~aL~~aL~~g~i 338 (628)
+++ ..||+++.|. ..+.|+.+... .++.++.+|=- +.+.+ ..++.. .|++..|
T Consensus 109 ~il~~~~DiliP~A-----~~~~I~~~~~~~~i~~~akiIvegAN~p~-t~~a~~-~L~~rGI 164 (244)
T PF00208_consen 109 EILSVDCDILIPCA-----LGNVINEDNAPSLIKSGAKIIVEGANGPL-TPEADE-ILRERGI 164 (244)
T ss_dssp HGGTSSSSEEEEES-----SSTSBSCHHHCHCHHTT-SEEEESSSSSB-SHHHHH-HHHHTT-
T ss_pred ccccccccEEEEcC-----CCCeeCHHHHHHHHhccCcEEEeCcchhc-cHHHHH-HHHHCCC
Confidence 666 5899999885 36678888877 77766655555 55554 455544 6666555
|
They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C .... |
| >PTZ00079 NADP-specific glutamate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.052 Score=60.43 Aligned_cols=109 Identities=23% Similarity=0.215 Sum_probs=68.6
Q ss_pred eeeecCCeEEEEecChhHHHHHHHHHcCCCEEEE-ECCC-------C-ChhHH---H-----------H-----cCCccc
Q 006864 224 GVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIA-HDPY-------A-PADKA---R-----------A-----VGVELV 275 (628)
Q Consensus 224 g~~l~GktiGIIGlG~IG~~vA~~l~~~G~~V~~-~d~~-------~-~~~~a---~-----------~-----~g~~~~ 275 (628)
+.++.|||+.|=|+|++|+..|+.|..+|++|++ .|.. - +.+.. . . .+++.+
T Consensus 232 ~~~l~Gk~VaVqG~GnVg~~aa~~L~e~GakVVavSD~~G~iy~~~Gld~~~l~~l~~~k~~~~g~i~~~~~~~~~a~~~ 311 (454)
T PTZ00079 232 NDSLEGKTVVVSGSGNVAQYAVEKLLQLGAKVLTMSDSDGYIHEPNGFTKEKLAYLMDLKNVKRGRLKEYAKHSSTAKYV 311 (454)
T ss_pred CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCCcEECCCCCCHHHHHHHHHHHhhcCCcHHhhhhccCCcEEe
Confidence 5679999999999999999999999999999994 3432 1 11111 0 0 023333
Q ss_pred CHHHHhc-cCCEEEEcCCCCccccccccHHHHhcC-CCCcEEEEcCCCchhcHHHHHHHHhCCCe
Q 006864 276 SFDQALA-TADFISLHMPLNPTTSKIFNDETFAKM-KKGVRIVNVARGGVIDEEALVRALDSGVV 338 (628)
Q Consensus 276 sl~ell~-~aDvV~l~~Plt~~t~~li~~~~l~~m-k~gailIN~aRg~~vde~aL~~aL~~g~i 338 (628)
+-++++. .||+.+-|. +.+.|+.+..+.+ +.++.+|--+--.....+|. +.|++..|
T Consensus 312 ~~~~~~~~~cDI~iPcA-----~~n~I~~~~a~~l~~~~ak~V~EgAN~p~t~eA~-~~L~~~GI 370 (454)
T PTZ00079 312 PGKKPWEVPCDIAFPCA-----TQNEINLEDAKLLIKNGCKLVAEGANMPTTIEAT-HLFKKNGV 370 (454)
T ss_pred CCcCcccCCccEEEecc-----ccccCCHHHHHHHHHcCCeEEEecCCCCCCHHHH-HHHHHCCc
Confidence 4344443 688887765 5777887777655 45555555444334444543 44544443
|
|
| >PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline [] | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.012 Score=62.81 Aligned_cols=89 Identities=25% Similarity=0.289 Sum_probs=53.5
Q ss_pred CeEEEEecChhHHHHHHHHHc-CCC-EEEEECCCCCh-h-HH---HHcCCcc---cCHHHHhccCCEEEEcCCCCccccc
Q 006864 230 KTLAVMGFGKVGSEVARRAKG-LGM-NVIAHDPYAPA-D-KA---RAVGVEL---VSFDQALATADFISLHMPLNPTTSK 299 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~-~G~-~V~~~d~~~~~-~-~a---~~~g~~~---~sl~ell~~aDvV~l~~Plt~~t~~ 299 (628)
+++||||.|..|+.-++.+.. ++. +|.+|+|+... + .+ ...++.. .+.++++++||+|+.++|-+..+ -
T Consensus 129 ~~l~viGaG~QA~~~~~a~~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~~~v~~~~~~~~av~~aDii~taT~s~~~~-P 207 (313)
T PF02423_consen 129 RTLGVIGAGVQARWHLRALAAVRPIKEVRVYSRSPERAEAFAARLRDLGVPVVAVDSAEEAVRGADIIVTATPSTTPA-P 207 (313)
T ss_dssp -EEEEE--SHHHHHHHHHHHHHS--SEEEEE-SSHHHHHHHHHHHHCCCTCEEEESSHHHHHTTSSEEEE----SSEE-E
T ss_pred ceEEEECCCHHHHHHHHHHHHhCCceEEEEEccChhHHHHHHHhhccccccceeccchhhhcccCCEEEEccCCCCCC-c
Confidence 589999999999999998864 554 79999997521 1 11 1124432 27999999999999999855432 5
Q ss_pred cccHHHHhcCCCCcEEEEcCCCc
Q 006864 300 IFNDETFAKMKKGVRIVNVARGG 322 (628)
Q Consensus 300 li~~~~l~~mk~gailIN~aRg~ 322 (628)
++..+ .+|+|+.|+.++...
T Consensus 208 ~~~~~---~l~~g~hi~~iGs~~ 227 (313)
T PF02423_consen 208 VFDAE---WLKPGTHINAIGSYT 227 (313)
T ss_dssp SB-GG---GS-TT-EEEE-S-SS
T ss_pred cccHH---HcCCCcEEEEecCCC
Confidence 66655 468999999988543
|
The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A. |
| >PRK13303 L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.021 Score=59.48 Aligned_cols=102 Identities=24% Similarity=0.330 Sum_probs=60.2
Q ss_pred CeEEEEecChhHHHHHHHHHcC-CCEEEE-ECCCCChhH-HHHc--CCcc-cCHHHHhccCCEEEEcCCCCccccccccH
Q 006864 230 KTLAVMGFGKVGSEVARRAKGL-GMNVIA-HDPYAPADK-ARAV--GVEL-VSFDQALATADFISLHMPLNPTTSKIFND 303 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~-G~~V~~-~d~~~~~~~-a~~~--g~~~-~sl~ell~~aDvV~l~~Plt~~t~~li~~ 303 (628)
.++||||+|.||+.+++.+... ++++.+ +++...... .... ++.. .+++++-.+.|+|+.|.|-.. . -+
T Consensus 2 ~rVgIiG~G~iG~~~~~~l~~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~DvVve~t~~~~--~---~e 76 (265)
T PRK13303 2 MKVAMIGFGAIGAAVLELLEHDPDLRVDWVIVPEHSIDAVRRALGEAVRVVSSVDALPQRPDLVVECAGHAA--L---KE 76 (265)
T ss_pred cEEEEECCCHHHHHHHHHHhhCCCceEEEEEEcCCCHHHHhhhhccCCeeeCCHHHhccCCCEEEECCCHHH--H---HH
Confidence 4799999999999999999865 566544 344322222 1222 3333 378888556999999998432 1 12
Q ss_pred HHHhcCCCCcEEEEcCCCchhcH---HHHHHHHhCC
Q 006864 304 ETFAKMKKGVRIVNVARGGVIDE---EALVRALDSG 336 (628)
Q Consensus 304 ~~l~~mk~gailIN~aRg~~vde---~aL~~aL~~g 336 (628)
-....++.|.-++-.+-|.+.|. +.|.++.+++
T Consensus 77 ~~~~aL~aGk~Vvi~s~~Al~d~~~~~~L~~~A~~~ 112 (265)
T PRK13303 77 HVVPILKAGIDCAVISVGALADEALRERLEQAAEAG 112 (265)
T ss_pred HHHHHHHcCCCEEEeChHHhcCHHHHHHHHHHHHHC
Confidence 22233455555554444444443 4466666554
|
|
| >TIGR00658 orni_carb_tr ornithine carbamoyltransferase | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.1 Score=55.60 Aligned_cols=93 Identities=24% Similarity=0.279 Sum_probs=63.6
Q ss_pred ecCCeEEEEec-ChhHHHHHHHHHcCCCEEEEECCCC--C-hhH-------HHHcCCc---ccCHHHHhccCCEEEEcC-
Q 006864 227 LVGKTLAVMGF-GKVGSEVARRAKGLGMNVIAHDPYA--P-ADK-------ARAVGVE---LVSFDQALATADFISLHM- 291 (628)
Q Consensus 227 l~GktiGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~--~-~~~-------a~~~g~~---~~sl~ell~~aDvV~l~~- 291 (628)
+.|.+|+++|- +++-++++..+..||++|....|.. . ... +...|.. ..++++.++.||+|..-.
T Consensus 146 l~g~~v~~vGd~~~v~~Sl~~~l~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvy~~~w 225 (304)
T TIGR00658 146 LKGVKVVYVGDGNNVCNSLMLAGAKLGMDVVVATPEGYEPDADIVKKAQEIAKENGGSVELTHDPVEAVKGADVIYTDVW 225 (304)
T ss_pred CCCcEEEEEeCCCchHHHHHHHHHHcCCEEEEECCchhcCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEcCc
Confidence 77899999997 7889999999999999999987753 2 111 2334532 248999999999998842
Q ss_pred -CCCcc----------ccccccHHHHhcCCCCcEEEEcC
Q 006864 292 -PLNPT----------TSKIFNDETFAKMKKGVRIVNVA 319 (628)
Q Consensus 292 -Plt~~----------t~~li~~~~l~~mk~gailIN~a 319 (628)
....+ ....++++.++.+|++++|.-|.
T Consensus 226 ~~~~~~~~~~~~~~~~~~y~l~~~~l~~~~~~~ivmHpl 264 (304)
T TIGR00658 226 VSMGEEDKKEERLKLFRPYQVNEELMELAKPEVIFMHCL 264 (304)
T ss_pred ccCccccccHHHHHHhcCCcCCHHHHhhcCCCCEEECCC
Confidence 11110 12345666666666666666653
|
Most OTCases are homotrimers, but the homotrimers are organized into dodecamers built from four trimers in at least two species; the catabolic OTCase of Pseudomonas aeruginosa is allosterically regulated, while OTCase of the extreme thermophile Pyrococcus furiosus shows both allostery and thermophily. |
| >cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein) | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.02 Score=47.50 Aligned_cols=59 Identities=12% Similarity=0.263 Sum_probs=45.1
Q ss_pred EEEEeccCCCCchhhHHhhhhcCCccccceEEeeeecCccEEEEEEeC----CCCCHHHHHHHhc
Q 006864 560 LILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVD----EEPNQDSLKEIGK 620 (628)
Q Consensus 560 ~Llv~~~D~PGvIa~V~~iL~~~~INIa~m~v~R~~~gg~Al~~i~vD----~~~~~~~l~~L~~ 620 (628)
.+.+..+|+||+++.|+.+|.++|+||-...+... ++.++-.+.+. .+.+++.+++|++
T Consensus 3 ri~V~~~D~~Gll~~i~~~l~~~~lnI~sa~i~t~--~~~~~d~f~v~~~~~~~~~~~~~~~l~~ 65 (72)
T cd04926 3 RLELRTEDRVGLLSDVTRVFRENGLTVTRAEISTQ--GDMAVNVFYVTDANGNPVDPKTIEAVRQ 65 (72)
T ss_pred EEEEEECCccCHHHHHHHHHHHCCcEEEEEEEecC--CCeEEEEEEEECCCCCcCCHHHHHHHHH
Confidence 46678899999999999999999999999988754 45777777762 2234456666654
|
This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains. |
| >PRK06823 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.025 Score=60.47 Aligned_cols=86 Identities=16% Similarity=0.243 Sum_probs=63.3
Q ss_pred CCeEEEEecChhHHHHHHHHHc-CC-CEEEEECCCCCh-hH----HHHcCCcc--c-CHHHHhccCCEEEEcCCCCcccc
Q 006864 229 GKTLAVMGFGKVGSEVARRAKG-LG-MNVIAHDPYAPA-DK----ARAVGVEL--V-SFDQALATADFISLHMPLNPTTS 298 (628)
Q Consensus 229 GktiGIIGlG~IG~~vA~~l~~-~G-~~V~~~d~~~~~-~~----a~~~g~~~--~-sl~ell~~aDvV~l~~Plt~~t~ 298 (628)
-++++|||.|..++.-++.+.. +. -+|.+||++... +. .++.++.. + +.++++++||+|+.++|- +.
T Consensus 128 ~~~l~iiG~G~qA~~~~~a~~~v~~i~~v~v~~r~~~~a~~~~~~~~~~~~~v~~~~~~~~av~~ADIV~taT~s---~~ 204 (315)
T PRK06823 128 VSAIGIVGTGIQARMQLMYLKNVTDCRQLWVWGRSETALEEYRQYAQALGFAVNTTLDAAEVAHAANLIVTTTPS---RE 204 (315)
T ss_pred CCEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhcCCcEEEECCHHHHhcCCCEEEEecCC---CC
Confidence 4799999999999999988764 33 479999998632 11 12224432 3 789999999999999873 35
Q ss_pred ccccHHHHhcCCCCcEEEEcCC
Q 006864 299 KIFNDETFAKMKKGVRIVNVAR 320 (628)
Q Consensus 299 ~li~~~~l~~mk~gailIN~aR 320 (628)
.++..+ .+|||+.|+.++.
T Consensus 205 P~~~~~---~l~~G~hi~~iGs 223 (315)
T PRK06823 205 PLLQAE---DIQPGTHITAVGA 223 (315)
T ss_pred ceeCHH---HcCCCcEEEecCC
Confidence 677655 4589999988874
|
|
| >PRK13814 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.081 Score=56.46 Aligned_cols=63 Identities=14% Similarity=0.227 Sum_probs=48.0
Q ss_pred ecCCeEEEEec---ChhHHHHHHHHHcCCC-EEEEECCCCC-hhHHHHcCCcc-cCHHHHhccCCEEEE
Q 006864 227 LVGKTLAVMGF---GKVGSEVARRAKGLGM-NVIAHDPYAP-ADKARAVGVEL-VSFDQALATADFISL 289 (628)
Q Consensus 227 l~GktiGIIGl---G~IG~~vA~~l~~~G~-~V~~~d~~~~-~~~a~~~g~~~-~sl~ell~~aDvV~l 289 (628)
+.|.+|+++|= +++..++...+..||+ +|....|..- ++......+.. .++++.++.||+|..
T Consensus 155 l~g~~va~vGD~~~~rv~~Sl~~~~a~~g~~~v~~~~P~~~~p~~~~~~~~~~~~d~~ea~~~aDvvy~ 223 (310)
T PRK13814 155 WNKLCVTIIGDIRHSRVANSLMDGLVTMGVPEIRLVGPSSLLPDKVGNDSIKKFTELKPSLLNSDVIVT 223 (310)
T ss_pred cCCcEEEEECCCCCCcHHHHHHHHHHHcCCCEEEEeCCcccCcCccccceEEEEcCHHHHhCCCCEEEE
Confidence 67899999998 5999999999999999 9999887531 11111112333 379999999999987
|
|
| >COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.019 Score=62.75 Aligned_cols=88 Identities=23% Similarity=0.201 Sum_probs=63.6
Q ss_pred CeEEEEecChhHHHHHHHHHcCC-CEEEEECCCC-ChhHHHHcC---Ccc--------cCHHHHhccCCEEEEcCCCCcc
Q 006864 230 KTLAVMGFGKVGSEVARRAKGLG-MNVIAHDPYA-PADKARAVG---VEL--------VSFDQALATADFISLHMPLNPT 296 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~G-~~V~~~d~~~-~~~~a~~~g---~~~--------~sl~ell~~aDvV~l~~Plt~~ 296 (628)
+++.|||.|.||+.+|..|.+.| .+|++.|+.. ...+..... ++. -.+.+++++.|+|+.++|-.-
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~~d~~al~~li~~~d~VIn~~p~~~- 80 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGGKVEALQVDAADVDALVALIKDFDLVINAAPPFV- 80 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccccceeEEecccChHHHHHHHhcCCEEEEeCCchh-
Confidence 68999999999999999999888 9999999985 333332332 221 147789999999999998543
Q ss_pred ccccccHHHH-hcCCCCcEEEEcCCCch
Q 006864 297 TSKIFNDETF-AKMKKGVRIVNVARGGV 323 (628)
Q Consensus 297 t~~li~~~~l-~~mk~gailIN~aRg~~ 323 (628)
+...+ +.++.|.-.++++-..-
T Consensus 81 -----~~~i~ka~i~~gv~yvDts~~~~ 103 (389)
T COG1748 81 -----DLTILKACIKTGVDYVDTSYYEE 103 (389)
T ss_pred -----hHHHHHHHHHhCCCEEEcccCCc
Confidence 22333 34677888888875443
|
|
| >cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.015 Score=60.34 Aligned_cols=114 Identities=21% Similarity=0.193 Sum_probs=70.2
Q ss_pred EEEEec-ChhHHHHHHHHHcCC----CEEEEECCCCChh--HHHH-------c-C--Ccc-cCHHHHhccCCEEEEcCCC
Q 006864 232 LAVMGF-GKVGSEVARRAKGLG----MNVIAHDPYAPAD--KARA-------V-G--VEL-VSFDQALATADFISLHMPL 293 (628)
Q Consensus 232 iGIIGl-G~IG~~vA~~l~~~G----~~V~~~d~~~~~~--~a~~-------~-g--~~~-~sl~ell~~aDvV~l~~Pl 293 (628)
|+|||. |.+|..+|..+...| -++..||...... ...+ . . +.. .++.+.+++||+|+++.-.
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~~~~~i~~~~d~~~~~~~aDiVv~t~~~ 80 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKVSITDDPYEAFKDADVVIITAGV 80 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhhccCcEEEECCchHHHhCCCCEEEECCCC
Confidence 589999 999999999998777 6899999764221 1111 1 1 111 2567899999999996522
Q ss_pred C--c-ccc--------cccc--HHHHhcCCCCcEEEEcCCCchhcHHHHHHH--HhCCCeeEEE-eec
Q 006864 294 N--P-TTS--------KIFN--DETFAKMKKGVRIVNVARGGVIDEEALVRA--LDSGVVAQAA-LDV 345 (628)
Q Consensus 294 t--~-~t~--------~li~--~~~l~~mk~gailIN~aRg~~vde~aL~~a--L~~g~i~ga~-lDV 345 (628)
. + .++ .++. .+.+.+..|.++++|++-.-=+-...+.+. +...++.|.+ +|.
T Consensus 81 ~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~~i~~tNP~d~~t~~~~~~sg~~~~kviG~~~ld~ 148 (263)
T cd00650 81 GRKPGMGRLDLLKRNVPIVKEIGDNIEKYSPDAWIIVVSNPVDIITYLVWRYSGLPKEKVIGLGTLDP 148 (263)
T ss_pred CCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHhCCCchhEEEeecchH
Confidence 1 1 011 1111 123444568999999963332333444444 4556788887 774
|
Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains |
| >PRK06199 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.02 Score=62.75 Aligned_cols=89 Identities=17% Similarity=0.178 Sum_probs=63.7
Q ss_pred CCeEEEEecChhHHHHHHHHHc-CC--CEEEEECCCCCh-h-HHH----Hc-C---Ccc-cCHHHHhccCCEEEEcCCCC
Q 006864 229 GKTLAVMGFGKVGSEVARRAKG-LG--MNVIAHDPYAPA-D-KAR----AV-G---VEL-VSFDQALATADFISLHMPLN 294 (628)
Q Consensus 229 GktiGIIGlG~IG~~vA~~l~~-~G--~~V~~~d~~~~~-~-~a~----~~-g---~~~-~sl~ell~~aDvV~l~~Plt 294 (628)
-+++||||.|..++.-++.+.. +. -+|.+||+.... + .+. .. + +.. .+.++++++||+|+.+++.+
T Consensus 155 a~~l~iiG~G~QA~~~l~a~~~v~~~i~~V~v~~r~~~~a~~f~~~~~~~~~~~~~v~~~~s~~eav~~ADIVvtaT~s~ 234 (379)
T PRK06199 155 SKVVGLLGPGVMGKTILAAFMAVCPGIDTIKIKGRGQKSLDSFATWVAETYPQITNVEVVDSIEEVVRGSDIVTYCNSGE 234 (379)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCCceEEEeCCHHHHHcCCCEEEEccCCC
Confidence 3799999999999999998876 42 389999998632 1 111 11 2 222 37999999999999999754
Q ss_pred c---cccccccHHHHhcCCCCcEEEEcCC
Q 006864 295 P---TTSKIFNDETFAKMKKGVRIVNVAR 320 (628)
Q Consensus 295 ~---~t~~li~~~~l~~mk~gailIN~aR 320 (628)
. .+..++..+ ++|+|+.|+.++.
T Consensus 235 ~~~~s~~Pv~~~~---~lkpG~hv~~ig~ 260 (379)
T PRK06199 235 TGDPSTYPYVKRE---WVKPGAFLLMPAA 260 (379)
T ss_pred CCCCCcCcEecHH---HcCCCcEEecCCc
Confidence 3 334677655 4589988876654
|
|
| >PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.0052 Score=51.53 Aligned_cols=45 Identities=24% Similarity=0.318 Sum_probs=32.7
Q ss_pred EeccCCCCchhhHHhhhhcCCccccceEEeeeecCccEEEEEEeC
Q 006864 563 CRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVD 607 (628)
Q Consensus 563 v~~~D~PGvIa~V~~iL~~~~INIa~m~v~R~~~gg~Al~~i~vD 607 (628)
+.-+|+||+++.|++.|.++|+||.+++..+-...-..++.++.+
T Consensus 7 v~G~DrpGiv~~v~~~l~~~g~ni~d~~~~~~~~~f~~~~~v~~~ 51 (76)
T PF13740_consen 7 VVGPDRPGIVAAVTGVLAEHGCNIEDSRQAVLGGRFTLIMLVSIP 51 (76)
T ss_dssp EEEE--TTHHHHHHHHHHCTT-EEEEEEEEEETTEEEEEEEEEES
T ss_pred EEecCCCcHHHHHHHHHHHCCCcEEEEEEEEEcCeEEEEEEEEeC
Confidence 345999999999999999999999999998755433445555555
|
|
| >COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.019 Score=57.83 Aligned_cols=94 Identities=18% Similarity=0.304 Sum_probs=61.7
Q ss_pred CeEEEEecChhHHHHHHHHHcC--CCE-EEEECCCCChhHHH--HcCC-cccCHHHHhccCCEEEEcCCCCccccccccH
Q 006864 230 KTLAVMGFGKVGSEVARRAKGL--GMN-VIAHDPYAPADKAR--AVGV-ELVSFDQALATADFISLHMPLNPTTSKIFND 303 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~--G~~-V~~~d~~~~~~~a~--~~g~-~~~sl~ell~~aDvV~l~~Plt~~t~~li~~ 303 (628)
.++||||+|.||+.+.+.++.- +++ +.+||+........ ..+- ...+++|++++.|+++=|.. ++... +
T Consensus 1 l~vgiVGcGaIG~~l~e~v~~~~~~~e~v~v~D~~~ek~~~~~~~~~~~~~s~ide~~~~~DlvVEaAS--~~Av~---e 75 (255)
T COG1712 1 LKVGIVGCGAIGKFLLELVRDGRVDFELVAVYDRDEEKAKELEASVGRRCVSDIDELIAEVDLVVEAAS--PEAVR---E 75 (255)
T ss_pred CeEEEEeccHHHHHHHHHHhcCCcceeEEEEecCCHHHHHHHHhhcCCCccccHHHHhhccceeeeeCC--HHHHH---H
Confidence 3799999999999999999843 454 67789875433322 2232 23579999999999988775 22222 2
Q ss_pred HHHhcCCCCcEEEEcCCCchhcHHH
Q 006864 304 ETFAKMKKGVRIVNVARGGVIDEEA 328 (628)
Q Consensus 304 ~~l~~mk~gailIN~aRg~~vde~a 328 (628)
-..+.||.|.=+|=++-|.+.|++-
T Consensus 76 ~~~~~L~~g~d~iV~SVGALad~~l 100 (255)
T COG1712 76 YVPKILKAGIDVIVMSVGALADEGL 100 (255)
T ss_pred HhHHHHhcCCCEEEEechhccChHH
Confidence 2233456665555555677776553
|
|
| >COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.011 Score=63.55 Aligned_cols=61 Identities=31% Similarity=0.412 Sum_probs=46.8
Q ss_pred CCeEEEEecChhHHHHHHHHHcCCCEEEEECCCCChhHHH--HcCC--cc---cCHHHHhccCCEEEE
Q 006864 229 GKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKAR--AVGV--EL---VSFDQALATADFISL 289 (628)
Q Consensus 229 GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~--~~g~--~~---~sl~ell~~aDvV~l 289 (628)
++||||||-|..|+.++..++.+|++|++.||........ ..-+ .+ ..+.++.+.||+|+.
T Consensus 1 ~~tvgIlGGGQLgrMm~~aa~~lG~~v~vLdp~~~~PA~~va~~~i~~~~dD~~al~ela~~~DViT~ 68 (375)
T COG0026 1 MKTVGILGGGQLGRMMALAAARLGIKVIVLDPDADAPAAQVADRVIVAAYDDPEALRELAAKCDVITY 68 (375)
T ss_pred CCeEEEEcCcHHHHHHHHHHHhcCCEEEEecCCCCCchhhcccceeecCCCCHHHHHHHHhhCCEEEE
Confidence 4799999999999999999999999999999876322111 1111 11 148899999999976
|
|
| >PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2 | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.043 Score=52.71 Aligned_cols=92 Identities=18% Similarity=0.272 Sum_probs=66.3
Q ss_pred cCCeEEEEe--cChhHHHHHHHHHcCCCEEEEECCCC---Ch--h-------HHHHcCC--cc-cCHHHHhccCCEEEEc
Q 006864 228 VGKTLAVMG--FGKVGSEVARRAKGLGMNVIAHDPYA---PA--D-------KARAVGV--EL-VSFDQALATADFISLH 290 (628)
Q Consensus 228 ~GktiGIIG--lG~IG~~vA~~l~~~G~~V~~~d~~~---~~--~-------~a~~~g~--~~-~sl~ell~~aDvV~l~ 290 (628)
.|+||++|| .+++..+++..+..||+++....|.. +. + .+...|. .. .++++.++++|+|..-
T Consensus 1 ~gl~i~~vGD~~~rv~~Sl~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~e~l~~aDvvy~~ 80 (158)
T PF00185_consen 1 KGLKIAYVGDGHNRVAHSLIELLAKFGMEVVLIAPEGLRYPPDPEVLEKAKKNAKKNGGKITITDDIEEALKGADVVYTD 80 (158)
T ss_dssp TTEEEEEESSTTSHHHHHHHHHHHHTTSEEEEESSGGGGGSHHHHHHHHHHHHHHHHTTEEEEESSHHHHHTT-SEEEEE
T ss_pred CCCEEEEECCCCChHHHHHHHHHHHcCCEEEEECCCcccCCCCHHHHHHHHHHHHHhCCCeEEEeCHHHhcCCCCEEEEc
Confidence 489999999 38999999999999999999988764 22 1 1122243 22 3899999999999875
Q ss_pred CCCC---cc--------ccccccHHHHhcCCCCcEEEEcC
Q 006864 291 MPLN---PT--------TSKIFNDETFAKMKKGVRIVNVA 319 (628)
Q Consensus 291 ~Plt---~~--------t~~li~~~~l~~mk~gailIN~a 319 (628)
.-.. .+ ....++++.++.+|++++|.-|.
T Consensus 81 ~~~s~~~~e~~~~~~~~~~y~v~~~~m~~a~~~~i~mH~L 120 (158)
T PF00185_consen 81 RWQSMGDKERFKRLEKFKPYQVTEELMERAKPDAIFMHPL 120 (158)
T ss_dssp SSSCTTSGGHHHHHHHHGGGSBSHHHHHTSSTT-EEEESS
T ss_pred CcccccchHHHHHHHHhcCCccCHHHHHhcCCCcEEEeCC
Confidence 5431 11 11457888999999999999885
|
1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A .... |
| >cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.0081 Score=51.69 Aligned_cols=60 Identities=23% Similarity=0.215 Sum_probs=44.7
Q ss_pred EEEEeccCCCCchhhHHhhhhcCCccccceEEeeeecCccEEEEEEeCCCC---C-HHHHHHHhcc
Q 006864 560 LILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDEEP---N-QDSLKEIGKV 621 (628)
Q Consensus 560 ~Llv~~~D~PGvIa~V~~iL~~~~INIa~m~v~R~~~gg~Al~~i~vD~~~---~-~~~l~~L~~l 621 (628)
.+.+.-+|+||+++.|++.|+++|+||.+++... .++.-.|.+.++-+. + +++.+.|+.+
T Consensus 3 vl~i~g~D~pGiva~vt~~la~~g~nI~~~~~~~--~~~~f~~~~~v~~~~~~~~~~~L~~~l~~l 66 (88)
T cd04872 3 VITVVGKDRVGIVAGVSTKLAELNVNILDISQTI--MDGYFTMIMIVDISESNLDFAELQEELEEL 66 (88)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCEEechhHh--hCCccEEEEEEEeCCCCCCHHHHHHHHHHH
Confidence 4566779999999999999999999999998875 456777777776543 2 3444444444
|
This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains. |
| >PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.021 Score=63.15 Aligned_cols=107 Identities=17% Similarity=0.150 Sum_probs=64.4
Q ss_pred CCeEEEEecChhHHHHHHHHHcCCCEEEEECCCCChhHHH-HcCCc-ccCHHHHhccCCEEEEcCCCCccccc-------
Q 006864 229 GKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKAR-AVGVE-LVSFDQALATADFISLHMPLNPTTSK------- 299 (628)
Q Consensus 229 GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~-~~g~~-~~sl~ell~~aDvV~l~~Plt~~t~~------- 299 (628)
.++|.|||+|.+|.++|+.|+..|++|.++|+........ ..+-. ....+.+..++|+++.+.+..+....
T Consensus 3 ~~~i~iiGlG~~G~slA~~l~~~G~~V~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvV~s~gi~~~~~~l~~A~~~ 82 (418)
T PRK00683 3 LQRVVVLGLGVTGKSIARFLAQKGVYVIGVDKSLEALQSCPYIHERYLENAEEFPEQVDLVVRSPGIKKEHPWVQAAIAS 82 (418)
T ss_pred CCeEEEEEECHHHHHHHHHHHHCCCEEEEEeCCccccchhHHHhhhhcCCcHHHhcCCCEEEECCCCCCCcHHHHHHHHC
Confidence 4789999999999999999999999999999765321110 00001 11233445789999887765543111
Q ss_pred ---cccHHHHh--c--C-CCCcEEEEcCCCchhcHHHHHHHHhC
Q 006864 300 ---IFNDETFA--K--M-KKGVRIVNVARGGVIDEEALVRALDS 335 (628)
Q Consensus 300 ---li~~~~l~--~--m-k~gailIN~aRg~~vde~aL~~aL~~ 335 (628)
++.+..+. . + ..-.+=|-=+-|+.--.+-|...|+.
T Consensus 83 g~~vv~~~~~~~~~~~~~~~~~I~ITGT~GKTTTt~ml~~iL~~ 126 (418)
T PRK00683 83 HIPVVTDIQLAFQTPEFTRYPSLGITGSTGKTTTILFLEHLLKR 126 (418)
T ss_pred CCcEEEHHHHHHhhhhcCCCCEEEEECCCChHHHHHHHHHHHHH
Confidence 22222221 1 1 11234444456777777777777754
|
|
| >PRK06223 malate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.031 Score=59.19 Aligned_cols=62 Identities=19% Similarity=0.365 Sum_probs=43.9
Q ss_pred CeEEEEecChhHHHHHHHHHcCCC-EEEEECCCCChhHHHHc---------CC--c--c-cCHHHHhccCCEEEEcCC
Q 006864 230 KTLAVMGFGKVGSEVARRAKGLGM-NVIAHDPYAPADKARAV---------GV--E--L-VSFDQALATADFISLHMP 292 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~~~~~a~~~---------g~--~--~-~sl~ell~~aDvV~l~~P 292 (628)
++|+|||.|.+|..+|..+...|. +|..+|........... +. . . .+. +.+++||+|++++.
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~-~~~~~aDiVii~~~ 79 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKELGDVVLFDIVEGVPQGKALDIAEAAPVEGFDTKITGTNDY-EDIAGSDVVVITAG 79 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCchhHHHHHHHHhhhhhcCCCcEEEeCCCH-HHHCCCCEEEECCC
Confidence 589999999999999999987654 99999985432211111 11 1 1 245 45799999999863
|
|
| >PRK02255 putrescine carbamoyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.13 Score=55.63 Aligned_cols=64 Identities=23% Similarity=0.337 Sum_probs=49.1
Q ss_pred eecCCeEEEEec-ChhHHHHHHHHHcCCCEEEEECCCC---ChhH---H----HHcCC--cc-cCHHHHhccCCEEEE
Q 006864 226 SLVGKTLAVMGF-GKVGSEVARRAKGLGMNVIAHDPYA---PADK---A----RAVGV--EL-VSFDQALATADFISL 289 (628)
Q Consensus 226 ~l~GktiGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~---~~~~---a----~~~g~--~~-~sl~ell~~aDvV~l 289 (628)
.+.|++|+++|= .++..+++..+..+|++|....|.. +.+. + ...|. .. .++++.++.||+|..
T Consensus 151 ~l~glkv~~vGD~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~eav~~aDvvy~ 228 (338)
T PRK02255 151 KLEDCKVVFVGDATQVCVSLMFIATKMGMDFVHFGPKGYQLPEEHLAIAEENCEVSGGSVLVTDDVDEAVKDADFVYT 228 (338)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHhCCCEEEEECCCccccCHHHHHHHHHHHHhcCCeEEEEcCHHHHhCCCCEEEE
Confidence 578999999997 6888899999999999999988753 2221 1 12343 22 489999999999988
|
|
| >cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein | Back alignment and domain information |
|---|
Probab=95.94 E-value=0.0095 Score=49.53 Aligned_cols=64 Identities=19% Similarity=0.205 Sum_probs=47.5
Q ss_pred EEEeccCCCCchhhHHhhhhcCCccccceEEeeeecCccEEEEEEeCCCC-CHHHHHHHhcccCcccc
Q 006864 561 ILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDEEP-NQDSLKEIGKVHFVARI 627 (628)
Q Consensus 561 Llv~~~D~PGvIa~V~~iL~~~~INIa~m~v~R~~~gg~Al~~i~vD~~~-~~~~l~~L~~l~~v~~v 627 (628)
|-+...|++|+++.|++.+++.++||..++.... +.-.+.+++.+.- =+.++++|+++++|.+|
T Consensus 3 l~I~~~dr~Gll~dI~~~i~~~~~nI~~~~~~~~---~~i~l~i~v~~~~~L~~li~~L~~i~gV~~V 67 (74)
T cd04877 3 LEITCEDRLGITQEVLDLLVEHNIDLRGIEIDPK---GRIYLNFPTIEFEKLQTLMPEIRRIDGVEDV 67 (74)
T ss_pred EEEEEEccchHHHHHHHHHHHCCCceEEEEEecC---CeEEEEeEecCHHHHHHHHHHHhCCCCceEE
Confidence 4566789999999999999999999999999543 3322233332211 14789999999999876
|
ACT_TyrR: N-terminal ACT domain of the TyrR protein. The TyrR protein of Escherichia coli controls the expression of a group of transcription units (TyrR regulon) whose gene products are involved in the biosynthesis or transport of the aromatic amino acids. Binding to specific DNA sequences known as TyrR boxes, the TyrR protein can either activate or repress transcription at different sigma70 promoters. Its regulatory activity occurs in response to intracellular levels of tyrosine, phenylalanine and tryptophan. The TyrR protein consists of an N-terminal region important for transcription activation with an ATP-independent aromatic amino acid binding site (contained within the ACT domain) and is involved in dimerization; a central region with an ATP binding site, an ATP-dependent aromatic amino acid binding site and is involved in hexamerization; and a helix turn helix DNA binding C-terminal region. In solution, in the absence |
| >COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=95.93 E-value=0.14 Score=54.57 Aligned_cols=116 Identities=22% Similarity=0.199 Sum_probs=79.5
Q ss_pred CCeEEEEecChhHHHHHHHHHcCCCEEEEECCCCCh-h-----------HHHHcCC-------------cc-cCHHHHhc
Q 006864 229 GKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPA-D-----------KARAVGV-------------EL-VSFDQALA 282 (628)
Q Consensus 229 GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~-----------~a~~~g~-------------~~-~sl~ell~ 282 (628)
-+++||||.|.||+.+|..+..-|++|..+|+.... + +..+.|. .. .++. .++
T Consensus 3 i~kv~ViGaG~MG~gIA~~~A~~G~~V~l~D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l~~i~~~~~~~-~l~ 81 (307)
T COG1250 3 IKKVAVIGAGVMGAGIAAVFALAGYDVVLKDISPEALERALAYIEKNLEKLVEKGKLTEEEADAALARITPTTDLA-ALK 81 (307)
T ss_pred ccEEEEEcccchhHHHHHHHhhcCCceEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHhhccccCchh-Hhc
Confidence 379999999999999999998877999999987311 1 1111110 00 1222 689
Q ss_pred cCCEEEEcCCCCccccccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhCC-CeeEEEeeccCCC
Q 006864 283 TADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSG-VVAQAALDVFTEE 349 (628)
Q Consensus 283 ~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~~vde~aL~~aL~~g-~i~ga~lDV~~~E 349 (628)
+||+|+=++|-+-+.++-+-++.=+..|++++|=.-.++ +.-.++.++++.. ++ .++..|.+-
T Consensus 82 ~~DlVIEAv~E~levK~~vf~~l~~~~~~~aIlASNTSs--l~it~ia~~~~rper~--iG~HFfNP~ 145 (307)
T COG1250 82 DADLVIEAVVEDLELKKQVFAELEALAKPDAILASNTSS--LSITELAEALKRPERF--IGLHFFNPV 145 (307)
T ss_pred cCCEEEEeccccHHHHHHHHHHHHhhcCCCcEEeeccCC--CCHHHHHHHhCCchhE--EEEeccCCC
Confidence 999999999988887776666666678999988654433 3445566677443 44 666666543
|
|
| >PLN02353 probable UDP-glucose 6-dehydrogenase | Back alignment and domain information |
|---|
Probab=95.93 E-value=0.039 Score=62.16 Aligned_cols=101 Identities=22% Similarity=0.320 Sum_probs=71.2
Q ss_pred eecCCeEEEEec----------ChhHHHHHHHHHcCCCEEEEECCCCChhHHH-Hc----------------------CC
Q 006864 226 SLVGKTLAVMGF----------GKVGSEVARRAKGLGMNVIAHDPYAPADKAR-AV----------------------GV 272 (628)
Q Consensus 226 ~l~GktiGIIGl----------G~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~-~~----------------------g~ 272 (628)
.+.|++|+|+|+ ..-...+++.|...|.+|.+|||........ .. ++
T Consensus 321 ~~~~~~VavlGlafK~~tdD~R~Spa~~li~~L~~~G~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (473)
T PLN02353 321 TVSGKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEEQIQRDLSMNKFDWDHPRHLQPMSPTAVKQV 400 (473)
T ss_pred ccCCCEEEEEeeeecCCCCccccChHHHHHHHHHhCCCEEEEECCCCChHHHHHHhhcccccccccccccccccccccce
Confidence 589999999998 5577899999999999999999997543221 12 11
Q ss_pred ccc-CHHHHhccCCEEEEcCCCCccccccccHHH-HhcCCCCcEEEEcCCCchhcHHHHH
Q 006864 273 ELV-SFDQALATADFISLHMPLNPTTSKIFNDET-FAKMKKGVRIVNVARGGVIDEEALV 330 (628)
Q Consensus 273 ~~~-sl~ell~~aDvV~l~~Plt~~t~~li~~~~-l~~mk~gailIN~aRg~~vde~aL~ 330 (628)
+.+ ++++.++.||+|+++++-. +-+. ++-+. .+.|++..+|+|+ | +++|.+.+.
T Consensus 401 ~~~~~~~~a~~~aD~vvi~t~~~-ef~~-l~~~~~~~~m~~~~~viD~-r-n~l~~~~~~ 456 (473)
T PLN02353 401 SVVWDAYEATKGAHGICILTEWD-EFKT-LDYQKIYDNMQKPAFVFDG-R-NVLDHEKLR 456 (473)
T ss_pred eeeCCHHHHhcCCCEEEECCCCh-Hhcc-cCHHHHHHhccCCCEEEEC-C-CCCCHHHHH
Confidence 222 5678999999999998733 3333 34333 4557766689995 4 455665543
|
|
| >PLN02527 aspartate carbamoyltransferase | Back alignment and domain information |
|---|
Probab=95.93 E-value=0.19 Score=53.60 Aligned_cols=92 Identities=13% Similarity=0.146 Sum_probs=61.5
Q ss_pred eecCCeEEEEecC---hhHHHHHHHHHcC-CCEEEEECCCC---Chh---HHHHcCCcc---cCHHHHhccCCEEEEcCC
Q 006864 226 SLVGKTLAVMGFG---KVGSEVARRAKGL-GMNVIAHDPYA---PAD---KARAVGVEL---VSFDQALATADFISLHMP 292 (628)
Q Consensus 226 ~l~GktiGIIGlG---~IG~~vA~~l~~~-G~~V~~~d~~~---~~~---~a~~~g~~~---~sl~ell~~aDvV~l~~P 292 (628)
.+.|++|+++|-+ ++..+++..+..| |++|....|.. +.+ .+++.|... .++++.++.||+|....
T Consensus 148 ~l~g~kva~vGD~~~~rv~~Sl~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvyt~~- 226 (306)
T PLN02527 148 RLDGIKVGLVGDLANGRTVRSLAYLLAKYEDVKIYFVAPDVVKMKDDIKDYLTSKGVEWEESSDLMEVASKCDVLYQTR- 226 (306)
T ss_pred CcCCCEEEEECCCCCChhHHHHHHHHHhcCCCEEEEECCCccCCCHHHHHHHHHcCCEEEEEcCHHHHhCCCCEEEECC-
Confidence 3789999999976 6889999998887 99999887743 222 123334432 38999999999999843
Q ss_pred CCcc-------------ccccccHHHHhcCCCCcEEEEc
Q 006864 293 LNPT-------------TSKIFNDETFAKMKKGVRIVNV 318 (628)
Q Consensus 293 lt~~-------------t~~li~~~~l~~mk~gailIN~ 318 (628)
...+ -...++++.++.+|++++|.-|
T Consensus 227 ~q~e~~~~~~~~~~~~~~~y~v~~~ll~~a~~~~ivmHc 265 (306)
T PLN02527 227 IQRERFGERIDLYEAARGKYIVDKKVMDVLPKHAVVMHP 265 (306)
T ss_pred cchhhhcchHHHHHHhCCCceECHHHHhccCCCCEEECC
Confidence 2111 0134455555566666666655
|
|
| >PRK03515 ornithine carbamoyltransferase subunit I; Provisional | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.093 Score=56.61 Aligned_cols=65 Identities=26% Similarity=0.321 Sum_probs=49.8
Q ss_pred eecCCeEEEEecC--hhHHHHHHHHHcCCCEEEEECCCC--Chh--------HHHHcCCc--c-cCHHHHhccCCEEEEc
Q 006864 226 SLVGKTLAVMGFG--KVGSEVARRAKGLGMNVIAHDPYA--PAD--------KARAVGVE--L-VSFDQALATADFISLH 290 (628)
Q Consensus 226 ~l~GktiGIIGlG--~IG~~vA~~l~~~G~~V~~~d~~~--~~~--------~a~~~g~~--~-~sl~ell~~aDvV~l~ 290 (628)
.+.|++|+++|-+ ++..+++..+..||+++.+..|.. +.. .++..|.. . .++++.+++||+|..-
T Consensus 153 ~l~g~~ia~vGD~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~i~~~~d~~ea~~~aDvvytd 232 (336)
T PRK03515 153 AFNEMTLAYAGDARNNMGNSLLEAAALTGLDLRLVAPKACWPEAALVTECRALAQKNGGNITLTEDIAEGVKGADFIYTD 232 (336)
T ss_pred CcCCCEEEEeCCCcCcHHHHHHHHHHHcCCEEEEECCchhcCcHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEec
Confidence 4788999999976 689999999999999999987743 211 12234532 2 3899999999999884
|
|
| >PRK04284 ornithine carbamoyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.12 Score=55.66 Aligned_cols=128 Identities=16% Similarity=0.158 Sum_probs=79.1
Q ss_pred HHhcCceEEcCCCCChhhHHHHHHHHHHHHHHchhHHHHHHHcCcccccccceeeecCCeEEEEecC--hhHHHHHHHHH
Q 006864 172 ATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGKTLAVMGFG--KVGSEVARRAK 249 (628)
Q Consensus 172 a~~~GI~V~n~p~~~~~avAE~~l~l~L~~~R~i~~~~~~~~~g~W~~~~~~g~~l~GktiGIIGlG--~IG~~vA~~l~ 249 (628)
+...+|+|+|+-+....++- +|+=++.+.+++ .| .+.|++|++||-+ ++.++.+..+.
T Consensus 118 a~~s~vPVINa~~~~~HPtQ--aL~Dl~Ti~e~~-----------------~g-~l~g~kia~vGD~~~~v~~Sl~~~~~ 177 (332)
T PRK04284 118 AEYSGVPVWNGLTDEDHPTQ--VLADFLTAKEHL-----------------KK-PYKDIKFTYVGDGRNNVANALMQGAA 177 (332)
T ss_pred HHhCCCCEEECCCCCCChHH--HHHHHHHHHHHh-----------------cC-CcCCcEEEEecCCCcchHHHHHHHHH
Confidence 34456899998654433332 222233333211 12 3778999999975 88999999999
Q ss_pred cCCCEEEEECCCC--Ch-h-------HHHHcCCc--c-cCHHHHhccCCEEEEcCCC--Cc------c-----ccccccH
Q 006864 250 GLGMNVIAHDPYA--PA-D-------KARAVGVE--L-VSFDQALATADFISLHMPL--NP------T-----TSKIFND 303 (628)
Q Consensus 250 ~~G~~V~~~d~~~--~~-~-------~a~~~g~~--~-~sl~ell~~aDvV~l~~Pl--t~------~-----t~~li~~ 303 (628)
.||++|...-|.. +. + .++..|.. . .++++.++.||+|..-.=. .. + -...+++
T Consensus 178 ~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~ea~~~aDvvy~~~w~~~~~~~~~~~~~~~~~~~y~v~~ 257 (332)
T PRK04284 178 IMGMDFHLVCPKELNPDDELLNKCKEIAAETGGKITITDDIDEGVKGSDVIYTDVWVSMGEPDEVWEERIKLLKPYQVNK 257 (332)
T ss_pred HcCCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEECCcccCccchhhHHHHHHhccCCcCCH
Confidence 9999999988752 21 1 11234532 2 3899999999999884210 00 0 1234566
Q ss_pred HHHhcCC-CCcEEEEcC
Q 006864 304 ETFAKMK-KGVRIVNVA 319 (628)
Q Consensus 304 ~~l~~mk-~gailIN~a 319 (628)
+.++.+| ++++|.-|.
T Consensus 258 e~l~~a~~~~~ivmHpl 274 (332)
T PRK04284 258 EMMKKTGNPNAIFEHCL 274 (332)
T ss_pred HHHhhcCCCCcEEECCC
Confidence 6677665 477776664
|
|
| >TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.021 Score=57.00 Aligned_cols=37 Identities=24% Similarity=0.416 Sum_probs=33.7
Q ss_pred eeecCCeEEEEecChhHHHHHHHHHcCCC-EEEEECCC
Q 006864 225 VSLVGKTLAVMGFGKVGSEVARRAKGLGM-NVIAHDPY 261 (628)
Q Consensus 225 ~~l~GktiGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~ 261 (628)
..|.+++|.|+|+|.+|..+|+.|...|. ++..+|+.
T Consensus 17 ~kl~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d 54 (202)
T TIGR02356 17 QRLLNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD 54 (202)
T ss_pred HHhcCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence 46889999999999999999999999997 89999875
|
coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli. |
| >PRK04435 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.75 E-value=0.024 Score=53.91 Aligned_cols=69 Identities=16% Similarity=0.186 Sum_probs=53.8
Q ss_pred CcEEEEeccCCCCchhhHHhhhhcCCccccceEEeeeecCccEEEEEEeCCCCC----HHHHHHHhcccCcccc
Q 006864 558 GNLILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDEEPN----QDSLKEIGKVHFVARI 627 (628)
Q Consensus 558 ~~~Llv~~~D~PGvIa~V~~iL~~~~INIa~m~v~R~~~gg~Al~~i~vD~~~~----~~~l~~L~~l~~v~~v 627 (628)
--.|.+...|+||+++.|.+.|+++++||-.++... ..+|.+-+.+.++.... ++++++|+++++|.+|
T Consensus 69 ~vtL~i~l~Dr~GlLs~Il~~IA~~~aNIltI~q~i-~~~g~a~vs~tVevs~~~~~L~~Li~~L~~i~gV~~V 141 (147)
T PRK04435 69 IITLSLLLEDRSGTLSKVLNVIAEAGGNILTINQSI-PLQGRANVTISIDTSSMEGDIDELLEKLRNLDGVEKV 141 (147)
T ss_pred EEEEEEEEecCCCHHHHHHHHHHHcCCCeEEEEEEc-CCCCEEEEEEEEEeCChHHHHHHHHHHHHcCCCcEEE
Confidence 345566789999999999999999999999998743 23466766666754332 3799999999999876
|
|
| >KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.0099 Score=59.87 Aligned_cols=220 Identities=19% Similarity=0.181 Sum_probs=122.9
Q ss_pred cCCeEEEEecChhHHHHHHHHHcCCCEEEEECCCCCh-hHHH-----------HcCC--------c-----------ccC
Q 006864 228 VGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPA-DKAR-----------AVGV--------E-----------LVS 276 (628)
Q Consensus 228 ~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~-----------~~g~--------~-----------~~s 276 (628)
.=+.++|||.|.||+.+|+.+..-|+.|..+|..... .++. ..+. + ..+
T Consensus 10 ~~~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~~aL~~A~~~I~~sl~rvakKk~~~~~~~~~e~v~~~l~ri~~~tn 89 (298)
T KOG2304|consen 10 EIKNVAIVGAGQMGSGIAQVAATSGLNVWLVDANEDALSRATKAISSSLKRVAKKKKADDPVALEEFVDDTLDRIKTSTN 89 (298)
T ss_pred cccceEEEcccccchhHHHHHHhcCCceEEecCCHHHHHHHHHHHHHHHHHHHhhcccCChhhHHHHHHHHHHHHHHcCC
Confidence 3478999999999999999999999999999976422 1110 0000 0 113
Q ss_pred HHHHhccCCEEEEcCCCCccccccccHHHHhcCCCCcEEE-EcCCCchhcHHHHHHHHhCCCeeEEEeeccCCCCCCCCC
Q 006864 277 FDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIV-NVARGGVIDEEALVRALDSGVVAQAALDVFTEEPPAKDS 355 (628)
Q Consensus 277 l~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailI-N~aRg~~vde~aL~~aL~~g~i~ga~lDV~~~EP~~~~~ 355 (628)
+.++++++|+|+=++--+-+.+.-+-++.=..+|+.+++. |+++ +...++..+++... ..+||..|.+-|.
T Consensus 90 v~~~v~dadliiEAivEn~diK~~lF~~l~~~ak~~~il~tNTSS---l~lt~ia~~~~~~s-rf~GlHFfNPvPv---- 161 (298)
T KOG2304|consen 90 VSDAVSDADLIIEAIVENLDIKRKLFKDLDKIAKSSTILATNTSS---LSLTDIASATQRPS-RFAGLHFFNPVPV---- 161 (298)
T ss_pred HHHhhhhhHHHHHHHHHhHHHHHHHHHHHHhhcccceEEeecccc---eeHHHHHhhccChh-hhceeeccCCchh----
Confidence 5667777888776654333333222222223467777765 5544 44556667776652 2478888876654
Q ss_pred ccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCcccCCCCCcccccccccHHHHHHHHhHHHHHHhcCC
Q 006864 356 KLVQHENVTVTPHLGASTKEAQEGVAIEIAEAVVGALRGELSATAINAPMVPSEVLSELAPYVVLAKKLGRLAVQLVSGG 435 (628)
Q Consensus 356 ~L~~~~nvilTPHig~~T~ea~~~~~~~~~~~i~~~l~g~~~~~~vn~p~~~~~~~~~~~p~~~lAerlG~la~qL~~g~ 435 (628)
..+=-||=|+...--|.++....+.. -|+.+..+-.-|.+.-..+ +-||+.=|-|+=. + |.
T Consensus 162 --MKLvEVir~~~TS~eTf~~l~~f~k~---------~gKttVackDtpGFIVNRl--LiPyl~ea~r~ye--r----Gd 222 (298)
T KOG2304|consen 162 --MKLVEVIRTDDTSDETFNALVDFGKA---------VGKTTVACKDTPGFIVNRL--LIPYLMEAIRMYE--R----GD 222 (298)
T ss_pred --HHHhhhhcCCCCCHHHHHHHHHHHHH---------hCCCceeecCCCchhhhHH--HHHHHHHHHHHHH--h----cC
Confidence 23334676776443333333222221 1444444555565555556 7788876655311 1 10
Q ss_pred CCceEEEE-------EEeecCCCCCCCcccchHHHHHhhccccccC
Q 006864 436 SGIKSVKL-------IYRSARDPDDLDTRILRAMITKGIIEPISAS 474 (628)
Q Consensus 436 ~~~~~v~i-------~~~Gs~a~~~~~~~~~~~a~l~GlL~~~~~~ 474 (628)
-.-++|.. +-.|.|.-.+|-+.-+...+++|.-+.+.++
T Consensus 223 AskeDIDtaMklGagyPMGPfEL~DyvGLDt~kfvmdgwhe~~pe~ 268 (298)
T KOG2304|consen 223 ASKEDIDTAMKLGAGYPMGPFELADYVGLDTCKFVMDGWHEGYPED 268 (298)
T ss_pred CcHhhHHHHHhccCCCCCChHHHHHHhhHHHHHHHHHHHHhcCCcc
Confidence 00111110 1235443236766667777777777665443
|
|
| >PRK00856 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.17 Score=53.98 Aligned_cols=64 Identities=19% Similarity=0.226 Sum_probs=48.4
Q ss_pred ecCCeEEEEec---ChhHHHHHHHHHcCCCEEEEECCCCChhHHHHcCCc-ccCHHHHhccCCEEEEcC
Q 006864 227 LVGKTLAVMGF---GKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVE-LVSFDQALATADFISLHM 291 (628)
Q Consensus 227 l~GktiGIIGl---G~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~-~~sl~ell~~aDvV~l~~ 291 (628)
+.|++|+++|- +++..+++..+..||+++....|..-..... ..+. ..++++.++.||+|....
T Consensus 154 l~g~kv~~vGD~~~~~v~~Sl~~~~~~~g~~~~~~~P~~~~~~~~-~~~~~~~d~~ea~~~aDvvyt~~ 221 (305)
T PRK00856 154 LEGLKVAIVGDIKHSRVARSNIQALTRLGAEVRLIAPPTLLPEGM-PEYGVHTDLDEVIEDADVVMMLR 221 (305)
T ss_pred CCCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEECCcccCcccc-cceEEECCHHHHhCCCCEEEECC
Confidence 77999999988 5899999999999999999988753110000 1122 238999999999998743
|
|
| >PTZ00082 L-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.03 Score=60.01 Aligned_cols=115 Identities=17% Similarity=0.215 Sum_probs=67.5
Q ss_pred ecCCeEEEEecChhHHHHHHHHHcCCC-EEEEECCCCChhHHHHc---------C----Ccc-cCHHHHhccCCEEEEcC
Q 006864 227 LVGKTLAVMGFGKVGSEVARRAKGLGM-NVIAHDPYAPADKARAV---------G----VEL-VSFDQALATADFISLHM 291 (628)
Q Consensus 227 l~GktiGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~~~~~a~~~---------g----~~~-~sl~ell~~aDvV~l~~ 291 (628)
+..++|+|||.|.+|..+|..+...|. +|..+|.......+..+ + +.. .++ +.++.||+|+++.
T Consensus 4 ~~~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I~~~~d~-~~l~~aDiVI~ta 82 (321)
T PTZ00082 4 IKRRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKNIPQGKALDISHSNVIAGSNSKVIGTNNY-EDIAGSDVVIVTA 82 (321)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCchhhHHHHHHHhhhhccCCCeEEEECCCH-HHhCCCCEEEECC
Confidence 345799999999999999999887774 89999976542211111 1 111 255 5679999999977
Q ss_pred CCCc--c--------------cccccc--HHHHhcCCCCcEEEEcCCCchhcHHHHHHHHh--CCCeeEEE
Q 006864 292 PLNP--T--------------TSKIFN--DETFAKMKKGVRIVNVARGGVIDEEALVRALD--SGVVAQAA 342 (628)
Q Consensus 292 Plt~--~--------------t~~li~--~~~l~~mk~gailIN~aRg~~vde~aL~~aL~--~g~i~ga~ 342 (628)
-... . +..++. .+.+....|.++++|++-.-=+....+.+... ..++.|.+
T Consensus 83 g~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~p~a~~iv~sNP~di~t~~~~~~sg~p~~rviGlg 153 (321)
T PTZ00082 83 GLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYCPNAFVIVITNPLDVMVKLLQEHSGLPKNKVCGMA 153 (321)
T ss_pred CCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHhcCCChhhEEEec
Confidence 3211 0 111111 12233445677899987433333444444332 23565654
|
|
| >PRK06407 ornithine cyclodeaminase; Provisional | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.051 Score=57.71 Aligned_cols=85 Identities=15% Similarity=0.128 Sum_probs=60.6
Q ss_pred CCeEEEEecChhHHHHHHHHHc-CCC-EEEEECCCCCh-h-HHHH----cCCc--c-cCHHHHhccCCEEEEcCCCCccc
Q 006864 229 GKTLAVMGFGKVGSEVARRAKG-LGM-NVIAHDPYAPA-D-KARA----VGVE--L-VSFDQALATADFISLHMPLNPTT 297 (628)
Q Consensus 229 GktiGIIGlG~IG~~vA~~l~~-~G~-~V~~~d~~~~~-~-~a~~----~g~~--~-~sl~ell~~aDvV~l~~Plt~~t 297 (628)
-+++||||.|..|+.-++.+.. +.. +|.+||++... + .+.. .|++ . .+.++++.+||+|+.++|-+
T Consensus 117 a~~l~iiGaG~QA~~~~~a~~~v~~i~~v~v~~r~~~~a~~f~~~~~~~~~~~v~~~~~~~eav~~aDIV~taT~s~--- 193 (301)
T PRK06407 117 VENFTIIGSGFQAETQLEGMASVYNPKRIRVYSRNFDHARAFAERFSKEFGVDIRPVDNAEAALRDADTITSITNSD--- 193 (301)
T ss_pred CcEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEecCCC---
Confidence 4899999999999988888764 443 79999988632 1 1111 2432 2 37999999999999998743
Q ss_pred cccccHHHHhcCCCCcEEEEcC
Q 006864 298 SKIFNDETFAKMKKGVRIVNVA 319 (628)
Q Consensus 298 ~~li~~~~l~~mk~gailIN~a 319 (628)
..++..+. +|||+.+.-++
T Consensus 194 ~P~~~~~~---l~pg~hV~aiG 212 (301)
T PRK06407 194 TPIFNRKY---LGDEYHVNLAG 212 (301)
T ss_pred CcEecHHH---cCCCceEEecC
Confidence 46676553 57887665554
|
|
| >PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.026 Score=63.89 Aligned_cols=109 Identities=21% Similarity=0.240 Sum_probs=70.9
Q ss_pred ecCCeEEEEecChhHHHHHHHHHcCCCEEEEECCCCC-hhHHHHcCCccc---CHHHHhccCCEEEEcCCCCcccc----
Q 006864 227 LVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAP-ADKARAVGVELV---SFDQALATADFISLHMPLNPTTS---- 298 (628)
Q Consensus 227 l~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~g~~~~---sl~ell~~aDvV~l~~Plt~~t~---- 298 (628)
+.|+++.|+|+|.+|.+.++.|+..|++|+++|.... ....++.|+... ...+.+.++|+|+..--..+...
T Consensus 10 ~~~~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~~~~~~~l~~~g~~~~~~~~~~~~l~~~D~VV~SpGi~~~~p~~~~ 89 (488)
T PRK03369 10 LPGAPVLVAGAGVTGRAVLAALTRFGARPTVCDDDPDALRPHAERGVATVSTSDAVQQIADYALVVTSPGFRPTAPVLAA 89 (488)
T ss_pred cCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHhCCCEEEcCcchHhHhhcCCEEEECCCCCCCCHHHHH
Confidence 4689999999999999999999999999999996532 122344576543 23456778999877653333211
Q ss_pred ------ccccHHHHh-cC--------CCCcEEEEcCCCchhcHHHHHHHHhC
Q 006864 299 ------KIFNDETFA-KM--------KKGVRIVNVARGGVIDEEALVRALDS 335 (628)
Q Consensus 299 ------~li~~~~l~-~m--------k~gailIN~aRg~~vde~aL~~aL~~ 335 (628)
.++++-+|. .+ +...+-|-=+-|+.--.+-+...|+.
T Consensus 90 a~~~gi~v~~~iel~~~~~~~~~~~~~~~vIgITGTnGKTTTt~li~~iL~~ 141 (488)
T PRK03369 90 AAAAGVPIWGDVELAWRLDAAGCYGPPRRWLVVTGTNGKTTTTSMLHAMLIA 141 (488)
T ss_pred HHHCCCcEeeHHHHhhhhhhhhccCCCCCEEEEECCCcHHHHHHHHHHHHHH
Confidence 123332332 11 11234455567888888877777765
|
|
| >PRK07589 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=95.63 E-value=0.043 Score=59.39 Aligned_cols=87 Identities=26% Similarity=0.306 Sum_probs=59.9
Q ss_pred CCeEEEEecChhHHHHHHHHH-cCCC-EEEEECCCCCh--hHH---HHcCCc--c-cCHHHHhccCCEEEEcCCCCcccc
Q 006864 229 GKTLAVMGFGKVGSEVARRAK-GLGM-NVIAHDPYAPA--DKA---RAVGVE--L-VSFDQALATADFISLHMPLNPTTS 298 (628)
Q Consensus 229 GktiGIIGlG~IG~~vA~~l~-~~G~-~V~~~d~~~~~--~~a---~~~g~~--~-~sl~ell~~aDvV~l~~Plt~~t~ 298 (628)
-++++|||.|..++.-++.+. -+.. +|.+|++.... ..+ .+.+++ . .++++++++||+|+.++|-+ +..
T Consensus 129 a~~l~iiGaG~QA~~~l~a~~~vr~i~~V~v~~r~~~~a~~~~~~~~~~~~~v~~~~~~~~av~~ADIIvtaT~S~-~~~ 207 (346)
T PRK07589 129 SRTMALIGNGAQSEFQALAFKALLGIEEIRLYDIDPAATAKLARNLAGPGLRIVACRSVAEAVEGADIITTVTADK-TNA 207 (346)
T ss_pred CcEEEEECCcHHHHHHHHHHHHhCCceEEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEecCCC-CCC
Confidence 378999999999998887765 3444 79999988532 111 122332 2 37999999999999999733 222
Q ss_pred ccccHHHHhcCCCCcEEEEcC
Q 006864 299 KIFNDETFAKMKKGVRIVNVA 319 (628)
Q Consensus 299 ~li~~~~l~~mk~gailIN~a 319 (628)
-++..+ .+|+|+.|.-++
T Consensus 208 Pvl~~~---~lkpG~hV~aIG 225 (346)
T PRK07589 208 TILTDD---MVEPGMHINAVG 225 (346)
T ss_pred ceecHH---HcCCCcEEEecC
Confidence 456554 358998766655
|
|
| >PRK11891 aspartate carbamoyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=95.62 E-value=0.2 Score=55.70 Aligned_cols=102 Identities=18% Similarity=0.177 Sum_probs=67.1
Q ss_pred hHHHhcCceEEcCC-CCCh---hhHHHHHHHHHHHHHHchhHHHHHHHcCcccccccceeeecCCeEEEEecC---hhHH
Q 006864 170 QAATEFGCLVVNAP-IANT---VAAAEHGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGKTLAVMGFG---KVGS 242 (628)
Q Consensus 170 ~aa~~~GI~V~n~p-~~~~---~avAE~~l~l~L~~~R~i~~~~~~~~~g~W~~~~~~g~~l~GktiGIIGlG---~IG~ 242 (628)
+.|...+|+|+|+- |... ++.|+. +.+.+++ |. .|..+.|+||+++|-+ ++..
T Consensus 198 e~A~~s~vPVINAgdg~~~HPtQaLaDl-----~Ti~E~~---------g~------~g~~l~G~kIa~vGD~~~~rv~~ 257 (429)
T PRK11891 198 EFARATNLPVINGGDGPGEHPSQALLDL-----YTIQREF---------SR------LGKIVDGAHIALVGDLKYGRTVH 257 (429)
T ss_pred HHHHhCCCCEEECCCCCCCCcHHHHHHH-----HHHHHHh---------Cc------cCCCcCCCEEEEECcCCCChHHH
Confidence 44556789999997 4443 444442 2222211 11 1224789999999994 8999
Q ss_pred HHHHHHHcC-CCEEEEECCCC---Chh---HHHHcCC--cc-cCHHHHhccCCEEEEcC
Q 006864 243 EVARRAKGL-GMNVIAHDPYA---PAD---KARAVGV--EL-VSFDQALATADFISLHM 291 (628)
Q Consensus 243 ~vA~~l~~~-G~~V~~~d~~~---~~~---~a~~~g~--~~-~sl~ell~~aDvV~l~~ 291 (628)
+++..+..+ ||+|....|.. +.+ .+.+.|. +. .++++.++.||+|....
T Consensus 258 Sl~~~la~~~G~~v~l~~P~~~~~~~~~~~~~~~~G~~v~~~~d~~eav~~ADVVYt~~ 316 (429)
T PRK11891 258 SLVKLLALYRGLKFTLVSPPTLEMPAYIVEQISRNGHVIEQTDDLAAGLRGADVVYATR 316 (429)
T ss_pred HHHHHHHHhcCCEEEEECCCccccCHHHHHHHHhcCCeEEEEcCHHHHhCCCCEEEEcC
Confidence 999998876 99999987753 222 2223353 32 38999999999999844
|
|
| >PRK02102 ornithine carbamoyltransferase; Validated | Back alignment and domain information |
|---|
Probab=95.62 E-value=0.15 Score=54.86 Aligned_cols=64 Identities=28% Similarity=0.413 Sum_probs=49.5
Q ss_pred ecCCeEEEEecC--hhHHHHHHHHHcCCCEEEEECCCC--Chh--------HHHHcCCc--c-cCHHHHhccCCEEEEc
Q 006864 227 LVGKTLAVMGFG--KVGSEVARRAKGLGMNVIAHDPYA--PAD--------KARAVGVE--L-VSFDQALATADFISLH 290 (628)
Q Consensus 227 l~GktiGIIGlG--~IG~~vA~~l~~~G~~V~~~d~~~--~~~--------~a~~~g~~--~-~sl~ell~~aDvV~l~ 290 (628)
+.|+||++||-+ ++..+++..+..||++|....|.. ..+ .++..|.. . .+++++++.||+|..-
T Consensus 153 l~g~~va~vGd~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~ea~~~aDvvyt~ 231 (331)
T PRK02102 153 LKGLKLAYVGDGRNNMANSLMVGGAKLGMDVRICAPKELWPEEELVALAREIAKETGAKITITEDPEEAVKGADVIYTD 231 (331)
T ss_pred CCCCEEEEECCCcccHHHHHHHHHHHcCCEEEEECCcccccCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEc
Confidence 789999999997 889999999999999999987753 211 12234543 2 3799999999999884
|
|
| >TIGR03316 ygeW probable carbamoyltransferase YgeW | Back alignment and domain information |
|---|
Probab=95.60 E-value=0.25 Score=53.77 Aligned_cols=65 Identities=25% Similarity=0.280 Sum_probs=47.6
Q ss_pred eecCCeEEEEecC--------hhHHHHHHHHHcCCCEEEEECCCC---ChhH-------HHHcCCc--c-cCHHHHhccC
Q 006864 226 SLVGKTLAVMGFG--------KVGSEVARRAKGLGMNVIAHDPYA---PADK-------ARAVGVE--L-VSFDQALATA 284 (628)
Q Consensus 226 ~l~GktiGIIGlG--------~IG~~vA~~l~~~G~~V~~~d~~~---~~~~-------a~~~g~~--~-~sl~ell~~a 284 (628)
.+.|+||+|+|.| ++.++++..+..|||+|....|.. ..+. +++.|.. . .++++.++.+
T Consensus 167 ~l~g~kvai~~~~d~~~gr~~~v~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~~~~~g~~~~~~~d~~ea~~~a 246 (357)
T TIGR03316 167 NLKGKKFAMTWAYSPSYGKPLSVPQGIIGLMTRFGMDVTLAHPEGYHLLPEVIEVAKKNAAENGGKFNIVNSMDEAFKDA 246 (357)
T ss_pred ccCCCEEEEEeccccccCccchHHHHHHHHHHHcCCEEEEECCCcccCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCC
Confidence 3789999999853 445778888999999999988753 2221 2234543 2 3899999999
Q ss_pred CEEEEc
Q 006864 285 DFISLH 290 (628)
Q Consensus 285 DvV~l~ 290 (628)
|+|..-
T Consensus 247 Dvvyt~ 252 (357)
T TIGR03316 247 DIVYPK 252 (357)
T ss_pred CEEEEC
Confidence 999886
|
Members of this protein family include the ygeW gene product of Escherichia coli. The function is unknown. Members show homology to ornithine carbamoyltransferase (TIGR00658) and aspartate carbamoyltransferase (carbamoyltransferase), and therefore may belong to the carbamoyltransferases in function. Members often are found in a large, conserved genomic region associated with purine catabolism. |
| >COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.55 E-value=0.047 Score=58.66 Aligned_cols=86 Identities=21% Similarity=0.265 Sum_probs=63.3
Q ss_pred CCeEEEEecChhHHHHHHHHHc-CCC-EEEEECCCCCh-hH-H----HHcCC--cc-cCHHHHhccCCEEEEcCCCCccc
Q 006864 229 GKTLAVMGFGKVGSEVARRAKG-LGM-NVIAHDPYAPA-DK-A----RAVGV--EL-VSFDQALATADFISLHMPLNPTT 297 (628)
Q Consensus 229 GktiGIIGlG~IG~~vA~~l~~-~G~-~V~~~d~~~~~-~~-a----~~~g~--~~-~sl~ell~~aDvV~l~~Plt~~t 297 (628)
-+++||||.|..++.-.+.++. |+. +|.+|++.... +. + ...+. .. .+.+++++.||+|+.++|.++
T Consensus 130 a~~laiIGaG~qA~~ql~a~~~v~~~~~I~i~~r~~~~~e~~a~~l~~~~~~~v~a~~s~~~av~~aDiIvt~T~s~~-- 207 (330)
T COG2423 130 ASTLAIIGAGAQARTQLEALKAVRDIREIRVYSRDPEAAEAFAARLRKRGGEAVGAADSAEEAVEGADIVVTATPSTE-- 207 (330)
T ss_pred CcEEEEECCcHHHHHHHHHHHhhCCccEEEEEcCCHHHHHHHHHHHHhhcCccceeccCHHHHhhcCCEEEEecCCCC--
Confidence 3689999999999999999874 554 78999987522 21 1 12222 22 378999999999999998664
Q ss_pred cccccHHHHhcCCCCcEEEEcCC
Q 006864 298 SKIFNDETFAKMKKGVRIVNVAR 320 (628)
Q Consensus 298 ~~li~~~~l~~mk~gailIN~aR 320 (628)
.++..+.+ |||+.|..++.
T Consensus 208 -Pil~~~~l---~~G~hI~aiGa 226 (330)
T COG2423 208 -PVLKAEWL---KPGTHINAIGA 226 (330)
T ss_pred -CeecHhhc---CCCcEEEecCC
Confidence 66666554 79988888873
|
|
| >TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form | Back alignment and domain information |
|---|
Probab=95.55 E-value=0.036 Score=60.01 Aligned_cols=86 Identities=17% Similarity=0.304 Sum_probs=56.2
Q ss_pred CeEEEEec-ChhHHHHHHHHHcC-CCEEEE-ECCCCC--hhHHHHc----C-----CcccCHHHHhccCCEEEEcCCCCc
Q 006864 230 KTLAVMGF-GKVGSEVARRAKGL-GMNVIA-HDPYAP--ADKARAV----G-----VELVSFDQALATADFISLHMPLNP 295 (628)
Q Consensus 230 ktiGIIGl-G~IG~~vA~~l~~~-G~~V~~-~d~~~~--~~~a~~~----g-----~~~~sl~ell~~aDvV~l~~Plt~ 295 (628)
++|+|+|. |.+|+.+++.|... +.++.+ +++... ....... + +...+.++++.++|+|++|+|-..
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~sagk~~~~~~~~l~~~~~~~~~~~~~~~~~~~~DvVf~alP~~~ 80 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRESAGKPVSEVHPHLRGLVDLNLEPIDEEEIAEDADVVFLALPHGV 80 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCceEEEEeccchhcCCChHHhCccccccCCceeecCCHHHhhcCCCEEEECCCchH
Confidence 47999998 99999999999987 678874 464431 1111111 1 122255677678999999999331
Q ss_pred cccccccHHHHhc-CCCCcEEEEcCCC
Q 006864 296 TTSKIFNDETFAK-MKKGVRIVNVARG 321 (628)
Q Consensus 296 ~t~~li~~~~l~~-mk~gailIN~aRg 321 (628)
..+.... .+.|..+||.+-.
T Consensus 81 ------s~~~~~~~~~~G~~VIDlS~~ 101 (346)
T TIGR01850 81 ------SAELAPELLAAGVKVIDLSAD 101 (346)
T ss_pred ------HHHHHHHHHhCCCEEEeCChh
Confidence 2333332 3678999998743
|
This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons. |
| >PRK00048 dihydrodipicolinate reductase; Provisional | Back alignment and domain information |
|---|
Probab=95.51 E-value=0.054 Score=56.12 Aligned_cols=63 Identities=24% Similarity=0.326 Sum_probs=45.4
Q ss_pred CeEEEEec-ChhHHHHHHHHHcC-CCEEEE-ECCCCChh-HHHHcCCc-ccCHHHHhccCCEEEEcCC
Q 006864 230 KTLAVMGF-GKVGSEVARRAKGL-GMNVIA-HDPYAPAD-KARAVGVE-LVSFDQALATADFISLHMP 292 (628)
Q Consensus 230 ktiGIIGl-G~IG~~vA~~l~~~-G~~V~~-~d~~~~~~-~a~~~g~~-~~sl~ell~~aDvV~l~~P 292 (628)
.+|+|+|+ |+||+.+++.+... ++++.+ +|+..... .....++. ..+++++++.+|+|+.++|
T Consensus 2 mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~~~~~~~~i~~~~dl~~ll~~~DvVid~t~ 69 (257)
T PRK00048 2 IKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPLVGQGALGVAITDDLEAVLADADVLIDFTT 69 (257)
T ss_pred cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccccCCCCccccCCHHHhccCCCEEEECCC
Confidence 47999998 99999999998864 688776 67654211 11223443 3478999988999997775
|
|
| >PLN02342 ornithine carbamoyltransferase | Back alignment and domain information |
|---|
Probab=95.44 E-value=0.23 Score=53.75 Aligned_cols=128 Identities=18% Similarity=0.163 Sum_probs=78.7
Q ss_pred HHHhcCceEEcCCCCChhhHHHHHHHHHHHHHHchhHHHHHHHcCcccccccceeeecCCeEEEEec-ChhHHHHHHHHH
Q 006864 171 AATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGKTLAVMGF-GKVGSEVARRAK 249 (628)
Q Consensus 171 aa~~~GI~V~n~p~~~~~avAE~~l~l~L~~~R~i~~~~~~~~~g~W~~~~~~g~~l~GktiGIIGl-G~IG~~vA~~l~ 249 (628)
.+..-+|+|+|+-+....++ .+++=++.+.++ .| .+.|+||+++|- .++-.+++..+.
T Consensus 157 la~~~~vPVINA~~~~~HPt--QaLaDl~Ti~e~------------------~G-~l~glkva~vGD~~nva~Sli~~~~ 215 (348)
T PLN02342 157 LAEYSSVPVINGLTDYNHPC--QIMADALTIIEH------------------IG-RLEGTKVVYVGDGNNIVHSWLLLAA 215 (348)
T ss_pred HHHhCCCCEEECCCCCCChH--HHHHHHHHHHHH------------------hC-CcCCCEEEEECCCchhHHHHHHHHH
Confidence 34556799999965443332 122223322221 12 378899999997 468888888889
Q ss_pred cCCCEEEEECCCC--C-hh---HHHHcC---Ccc-cCHHHHhccCCEEEEcC---CCCcc---------ccccccHHHHh
Q 006864 250 GLGMNVIAHDPYA--P-AD---KARAVG---VEL-VSFDQALATADFISLHM---PLNPT---------TSKIFNDETFA 307 (628)
Q Consensus 250 ~~G~~V~~~d~~~--~-~~---~a~~~g---~~~-~sl~ell~~aDvV~l~~---Plt~~---------t~~li~~~~l~ 307 (628)
.||++|....|.. + .+ .++..| ++. .++++.++.||+|..-. -...+ ....++++.++
T Consensus 216 ~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~~~d~~eav~~aDVvy~~~W~s~~~~e~~~~~~~~~~~y~vt~ell~ 295 (348)
T PLN02342 216 VLPFHFVCACPKGYEPDAKTVEKARAAGISKIEITNDPAEAVKGADVVYTDVWASMGQKEEAEKRKKAFQGFQVNEALMK 295 (348)
T ss_pred HcCCEEEEECCcccccCHHHHHHHHHhCCCcEEEEcCHHHHhCCCCEEEECCccccccchhhHHHHHhccCCccCHHHHh
Confidence 9999999987753 2 11 123334 232 37999999999999853 11111 12445666666
Q ss_pred cCCCCcEEEEcC
Q 006864 308 KMKKGVRIVNVA 319 (628)
Q Consensus 308 ~mk~gailIN~a 319 (628)
.+|++++|.-|.
T Consensus 296 ~ak~~aivMHpL 307 (348)
T PLN02342 296 LAGPQAYFMHCL 307 (348)
T ss_pred ccCCCcEEeCCC
Confidence 666666666663
|
|
| >TIGR00655 PurU formyltetrahydrofolate deformylase | Back alignment and domain information |
|---|
Probab=95.43 E-value=0.022 Score=59.84 Aligned_cols=50 Identities=16% Similarity=0.256 Sum_probs=43.2
Q ss_pred EEEEeccCCCCchhhHHhhhhcCCccccceEEeeeecCccEEEEEEeCCC
Q 006864 560 LILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDEE 609 (628)
Q Consensus 560 ~Llv~~~D~PGvIa~V~~iL~~~~INIa~m~v~R~~~gg~Al~~i~vD~~ 609 (628)
+|.+.-+|+||+|++|++.|+++|+||.+++-.....++.=.|++.+|-+
T Consensus 2 ~itv~g~D~~GIVA~Vt~~La~~g~NI~d~sq~~~~~~~~F~mr~~v~~~ 51 (280)
T TIGR00655 2 ILLVSCPDQKGLVAAISTFIAKHGANIISNDQHTDPETGRFFMRVEFQLE 51 (280)
T ss_pred EEEEECCCCCChHHHHHHHHHHCCCCEEeeeEEEcCCCCeEEEEEEEEeC
Confidence 45677899999999999999999999999999877667788888888744
|
This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region. |
| >PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate | Back alignment and domain information |
|---|
Probab=95.40 E-value=0.017 Score=52.72 Aligned_cols=85 Identities=19% Similarity=0.384 Sum_probs=50.1
Q ss_pred eEEEEe-cChhHHHHHHHHHc-CCCEEEE-ECCCC--ChhHHHHc----CCc---ccC-HHHHhccCCEEEEcCCCCccc
Q 006864 231 TLAVMG-FGKVGSEVARRAKG-LGMNVIA-HDPYA--PADKARAV----GVE---LVS-FDQALATADFISLHMPLNPTT 297 (628)
Q Consensus 231 tiGIIG-lG~IG~~vA~~l~~-~G~~V~~-~d~~~--~~~~a~~~----g~~---~~s-l~ell~~aDvV~l~~Plt~~t 297 (628)
+||||| .|.+|+.+.++|.. ..+++.. +++.. ........ +.. ..+ -.+.+.++|+|++|+|-.. +
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvf~a~~~~~-~ 79 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPLSEVFPHPKGFEDLSVEDADPEELSDVDVVFLALPHGA-S 79 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBHHHTTGGGTTTEEEBEEETSGHHHTTESEEEE-SCHHH-H
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCeeehhccccccccceeEeecchhHhhcCCEEEecCchhH-H
Confidence 689999 99999999999985 3466554 33332 11111111 111 111 2344599999999998332 1
Q ss_pred cccccHHHHhcCCCCcEEEEcCC
Q 006864 298 SKIFNDETFAKMKKGVRIVNVAR 320 (628)
Q Consensus 298 ~~li~~~~l~~mk~gailIN~aR 320 (628)
+.+ ...+ +++|+.+||.+.
T Consensus 80 ~~~--~~~~--~~~g~~ViD~s~ 98 (121)
T PF01118_consen 80 KEL--APKL--LKAGIKVIDLSG 98 (121)
T ss_dssp HHH--HHHH--HHTTSEEEESSS
T ss_pred HHH--HHHH--hhCCcEEEeCCH
Confidence 211 1112 588999999874
|
This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C .... |
| >PRK08306 dipicolinate synthase subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=95.38 E-value=0.071 Score=56.45 Aligned_cols=87 Identities=23% Similarity=0.259 Sum_probs=64.6
Q ss_pred cCCeEEEEecChhHHHHHHHHHcCCCEEEEECCCCChhHHHHcCCccc-CHHHHhccCCEEEEcCCCCcccc---c----
Q 006864 228 VGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELV-SFDQALATADFISLHMPLNPTTS---K---- 299 (628)
Q Consensus 228 ~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~-sl~ell~~aDvV~l~~Plt~~t~---~---- 299 (628)
.|++++|||-=.--..++++|...|++|..+.-. . +.....|++.+ +.++++++||+|++-+|.+.+.. .
T Consensus 1 ~~~~~~v~ggd~r~~~~~~~l~~~G~~v~~~g~~-~-~~~~~~g~~~~~~~~~~~~~ad~ii~~~p~~~~~~~i~~~~~~ 78 (296)
T PRK08306 1 TGKHIAVIGGDARQLELIRKLVELGAKVSLVGFD-Q-LDHGFTGATKSSSLEEALSDVDVIILPVPGTNDEGNVDTVFSN 78 (296)
T ss_pred CCcEEEEEcCcHHHHHHHHHHHHCCCEEEEEecc-c-cccccCCceeeccHHHHhccCCEEEECCccccCCceeeccccc
Confidence 4789999999999999999999999999875311 1 11123466665 67888999999999988754321 1
Q ss_pred ---cccHHHHhcCCCCcEEE
Q 006864 300 ---IFNDETFAKMKKGVRIV 316 (628)
Q Consensus 300 ---li~~~~l~~mk~gailI 316 (628)
-++.+.+++||+++.++
T Consensus 79 ~~~~~~~~~l~~l~~~~~v~ 98 (296)
T PRK08306 79 EKLVLTEELLELTPEHCTIF 98 (296)
T ss_pred cCCcchHHHHHhcCCCCEEE
Confidence 13578999999998544
|
|
| >COG5322 Predicted dehydrogenase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.35 E-value=0.045 Score=56.56 Aligned_cols=113 Identities=21% Similarity=0.190 Sum_probs=74.4
Q ss_pred HHHHHchhHHHHHHHcCcccccccceeeecCCeEEEEec-ChhHHHHHHHHHcCCCEEEEECCCC-Ch------hHHHHc
Q 006864 199 ASMARNVSQADASIKAGKWLRSKYVGVSLVGKTLAVMGF-GKVGSEVARRAKGLGMNVIAHDPYA-PA------DKARAV 270 (628)
Q Consensus 199 L~~~R~i~~~~~~~~~g~W~~~~~~g~~l~GktiGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~-~~------~~a~~~ 270 (628)
.+.+|++.++.++ .|++++..|++|+|+ |.||..+|+.|.+.+.+....-+.. .. .....+
T Consensus 148 yaa~r~Vl~~~~~-----------lGidlsqatvaivGa~G~Ia~~Iar~la~~~~~~~ll~r~aea~~rq~l~~l~e~~ 216 (351)
T COG5322 148 YAACRQVLKHFAQ-----------LGIDLSQATVAIVGATGDIASAIARWLAPKVGVKELLLRDAEARNRQRLTLLQEEL 216 (351)
T ss_pred HHHHHHHHHHHHH-----------hCcCHHHCeEEEecCCchHHHHHHHHhccccCEEEEecccHHhhhhhhhhhccccc
Confidence 4567777665543 489999999999996 9999999999998887654443221 11 111223
Q ss_pred CCc-ccCHHHHhccCCEEEEcCCCCccccccccHHHHhcCCCCcEEEEcCCCchhcHH
Q 006864 271 GVE-LVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEE 327 (628)
Q Consensus 271 g~~-~~sl~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~~vde~ 327 (628)
+.. ..+++..+.+.|+++-..... +-..|+.+. +|||+.+||-++.+=+|+.
T Consensus 217 ~~~~i~s~d~~~~~e~i~v~vAs~~--~g~~I~pq~---lkpg~~ivD~g~P~dvd~~ 269 (351)
T COG5322 217 GRGKIMSLDYALPQEDILVWVASMP--KGVEIFPQH---LKPGCLIVDGGYPKDVDTS 269 (351)
T ss_pred CCCeeeeccccccccceEEEEeecC--CCceechhh---ccCCeEEEcCCcCcccccc
Confidence 332 347776666666665544322 344566554 5999999999988766664
|
|
| >PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.34 E-value=0.042 Score=59.36 Aligned_cols=31 Identities=23% Similarity=0.455 Sum_probs=25.6
Q ss_pred CeEEEEecChhHHHHHHHHHc-CCCEEEEE-CC
Q 006864 230 KTLAVMGFGKVGSEVARRAKG-LGMNVIAH-DP 260 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~-~G~~V~~~-d~ 260 (628)
.+|||+|+|+||+.+++.+.. -+|++.+. |+
T Consensus 2 ikVaI~G~GrIGr~va~al~~~~d~eLvav~d~ 34 (341)
T PRK04207 2 IKVGVNGYGTIGKRVADAVAAQPDMELVGVAKT 34 (341)
T ss_pred eEEEEECCCHHHHHHHHHHhcCCCcEEEEEECC
Confidence 379999999999999998875 46888775 53
|
|
| >PRK14804 ornithine carbamoyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=95.34 E-value=0.26 Score=52.62 Aligned_cols=66 Identities=21% Similarity=0.399 Sum_probs=50.7
Q ss_pred eecCCeEEEEec-ChhHHHHHHHHHcCCCEEEEECCCCC-hh-------HHHHcC-Ccc-cCHHHHhccCCEEEEcC
Q 006864 226 SLVGKTLAVMGF-GKVGSEVARRAKGLGMNVIAHDPYAP-AD-------KARAVG-VEL-VSFDQALATADFISLHM 291 (628)
Q Consensus 226 ~l~GktiGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~~-~~-------~a~~~g-~~~-~sl~ell~~aDvV~l~~ 291 (628)
.+.|++|++||- +++..+++..+..|||+|....|... .+ .++..| +.. .++++.++.||+|..-.
T Consensus 150 ~l~g~~va~vGd~~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~~~g~i~~~~d~~~av~~aDvvy~d~ 226 (311)
T PRK14804 150 PLNQKQLTYIGVHNNVVNSLIGITAALGIHLTLVTPIAAKENIHAQTVERAKKKGTLSWEMNLHKAVSHADYVYTDT 226 (311)
T ss_pred CCCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEECCCCccHHHHHHHHHHHHhcCCeEEEeCHHHHhCCCCEEEeee
Confidence 478999999998 79999999999999999999988542 11 122223 332 48999999999998843
|
|
| >PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ] | Back alignment and domain information |
|---|
Probab=95.34 E-value=0.046 Score=50.28 Aligned_cols=98 Identities=21% Similarity=0.308 Sum_probs=55.9
Q ss_pred eEEEEec-ChhHHHHHHHHHc-CCCEEEE-ECCCCCh----hHHH-----HcCCcc-cCHHHHhccCCEEEEcCCCCccc
Q 006864 231 TLAVMGF-GKVGSEVARRAKG-LGMNVIA-HDPYAPA----DKAR-----AVGVEL-VSFDQALATADFISLHMPLNPTT 297 (628)
Q Consensus 231 tiGIIGl-G~IG~~vA~~l~~-~G~~V~~-~d~~~~~----~~a~-----~~g~~~-~sl~ell~~aDvV~l~~Plt~~t 297 (628)
+|+|+|+ |+||+.+++.+.. -|+++.+ +|+..+. +... ..++.. .++++++.++|+++-.. +++.
T Consensus 2 rV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~~~~~~~~~~~v~~~l~~~~~~~DVvIDfT--~p~~ 79 (124)
T PF01113_consen 2 RVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGKDVGELAGIGPLGVPVTDDLEELLEEADVVIDFT--NPDA 79 (124)
T ss_dssp EEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCHHHCTSST-SSBEBS-HHHHTTH-SEEEEES---HHH
T ss_pred EEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccchhhhhhCcCCcccccchhHHHhcccCCEEEEcC--ChHH
Confidence 7999999 9999999999987 7888665 5655411 1111 223332 37999999999997766 3432
Q ss_pred cccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHH
Q 006864 298 SKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRAL 333 (628)
Q Consensus 298 ~~li~~~~l~~mk~gailIN~aRg~~vde~aL~~aL 333 (628)
..-.-+.. ++.|.-+|-...|---.+.+.++.+
T Consensus 80 ~~~~~~~~---~~~g~~~ViGTTG~~~~~~~~l~~~ 112 (124)
T PF01113_consen 80 VYDNLEYA---LKHGVPLVIGTTGFSDEQIDELEEL 112 (124)
T ss_dssp HHHHHHHH---HHHT-EEEEE-SSSHHHHHHHHHHH
T ss_pred hHHHHHHH---HhCCCCEEEECCCCCHHHHHHHHHH
Confidence 21111222 3446666665555543343444443
|
In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A .... |
| >PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=95.32 E-value=0.15 Score=54.44 Aligned_cols=99 Identities=18% Similarity=0.098 Sum_probs=70.3
Q ss_pred hHHHHHHHHHcCCCEEEEECCCCCh--------hHH-----------HHcC-------------Cccc-C--HHHHhccC
Q 006864 240 VGSEVARRAKGLGMNVIAHDPYAPA--------DKA-----------RAVG-------------VELV-S--FDQALATA 284 (628)
Q Consensus 240 IG~~vA~~l~~~G~~V~~~d~~~~~--------~~a-----------~~~g-------------~~~~-s--l~ell~~a 284 (628)
||..+|..+...|++|..||+.... +++ ...| ++.+ + +.+.+++|
T Consensus 1 MG~giA~~~a~~G~~V~l~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~a~~~a 80 (314)
T PRK08269 1 MGQGIALAFAFAGHDVTLIDFKPRDAAGWRALDAEARAEIERTLAALVALGRIDAAQADAVLARIAVVARDGAADALADA 80 (314)
T ss_pred CcHHHHHHHHhCCCeEEEEeCCcccchhhHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEeecCcchHHHhccC
Confidence 6889999999999999999987621 100 1111 1122 2 55788999
Q ss_pred CEEEEcCCCCccccccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhC-CCeeE
Q 006864 285 DFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDS-GVVAQ 340 (628)
Q Consensus 285 DvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~~vde~aL~~aL~~-g~i~g 340 (628)
|+|+-++|-+.+.+.-+-.+..+.++++++|... ...+....|.+.++. .++.|
T Consensus 81 D~ViEav~E~~~~K~~~f~~l~~~~~~~~ilaSn--tS~~~~~~la~~~~~p~r~~g 135 (314)
T PRK08269 81 DLVFEAVPEVLDAKREALRWLGRHVDADAIIAST--TSTFLVTDLQRHVAHPERFLN 135 (314)
T ss_pred CEEEECCcCCHHHHHHHHHHHHhhCCCCcEEEEc--cccCCHHHHHhhcCCcccEEE
Confidence 9999999999988888777777889999999544 445566667776643 35533
|
|
| >cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1 | Back alignment and domain information |
|---|
Probab=95.32 E-value=1.1 Score=47.04 Aligned_cols=168 Identities=16% Similarity=0.128 Sum_probs=106.3
Q ss_pred ceeeecCCeEEEEecChhHHHHHHHHHcC----CC-------EEEEECCCC---------Ch---hHHHHcC-CcccCHH
Q 006864 223 VGVSLVGKTLAVMGFGKVGSEVARRAKGL----GM-------NVIAHDPYA---------PA---DKARAVG-VELVSFD 278 (628)
Q Consensus 223 ~g~~l~GktiGIIGlG~IG~~vA~~l~~~----G~-------~V~~~d~~~---------~~---~~a~~~g-~~~~sl~ 278 (628)
.|..|...+|.|+|.|.-|-.+|+.+... |+ +++.+|+.- .. ..++... -...+|.
T Consensus 19 ~g~~l~d~~iv~~GAGsAg~gia~ll~~~~~~~G~~~eeA~~~i~~vD~~Gll~~~r~~l~~~~~~~a~~~~~~~~~~L~ 98 (279)
T cd05312 19 TGKPLSDQRILFLGAGSAGIGIADLIVSAMVREGLSEEEARKKIWLVDSKGLLTKDRKDLTPFKKPFARKDEEKEGKSLL 98 (279)
T ss_pred hCCChhhcEEEEECcCHHHHHHHHHHHHHHHHcCCChhhccCeEEEEcCCCeEeCCCCcchHHHHHHHhhcCcccCCCHH
Confidence 45678889999999999999999999876 77 788888651 11 1111111 0234899
Q ss_pred HHhc--cCCEEEEcCCCCccccccccHHHHhcCC---CCcEEEEcCCCchh---cHHHHHHHHhCCCeeEEEeeccCCCC
Q 006864 279 QALA--TADFISLHMPLNPTTSKIFNDETFAKMK---KGVRIVNVARGGVI---DEEALVRALDSGVVAQAALDVFTEEP 350 (628)
Q Consensus 279 ell~--~aDvV~l~~Plt~~t~~li~~~~l~~mk---~gailIN~aRg~~v---de~aL~~aL~~g~i~ga~lDV~~~EP 350 (628)
|+++ .+|+++=+- ..-+.|+++.++.|. +..+|.=.+....- ..++.+++-+...|.+.|.-.-..+.
T Consensus 99 e~i~~v~ptvlIG~S----~~~g~ft~evv~~Ma~~~~~PIIFaLSNPt~~~E~~pe~a~~~t~G~ai~ATGsPf~pv~~ 174 (279)
T cd05312 99 EVVKAVKPTVLIGLS----GVGGAFTEEVVRAMAKSNERPIIFALSNPTSKAECTAEDAYKWTDGRALFASGSPFPPVEY 174 (279)
T ss_pred HHHHhcCCCEEEEeC----CCCCCCCHHHHHHHHhcCCCCEEEECCCcCCccccCHHHHHHhhcCCEEEEeCCCCCCeee
Confidence 9999 889997632 124799999999998 89999999987652 33443443333347666654322222
Q ss_pred CCCCCccccCCcEEEcCCCCCCcHH-----HHHHHHHHHHHHHHHHHcC
Q 006864 351 PAKDSKLVQHENVTVTPHLGASTKE-----AQEGVAIEIAEAVVGALRG 394 (628)
Q Consensus 351 ~~~~~~L~~~~nvilTPHig~~T~e-----a~~~~~~~~~~~i~~~l~g 394 (628)
.......=+..|+++-|=++-.... --+.|-..+++.|.++..-
T Consensus 175 ~Gr~~~p~Q~NN~~iFPGiglGal~~~a~~itd~m~~aAA~aLA~~~~~ 223 (279)
T cd05312 175 NGKTYVPGQGNNAYIFPGIGLGAILSGARHITDEMFLAAAEALASLVTD 223 (279)
T ss_pred CCeEecCCCcceeeeccchhhHHHHcCCeeCCHHHHHHHHHHHHHhCCc
Confidence 1111122356799999988743221 1234445566666665543
|
Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH |
| >cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme | Back alignment and domain information |
|---|
Probab=95.31 E-value=0.79 Score=47.49 Aligned_cols=159 Identities=14% Similarity=0.090 Sum_probs=106.5
Q ss_pred HHHHHHHHHHHHHchhHHHHHHHcCcccccccceeeecCCeEEEEecChhHHHHHHHHHcCCC-----------EEEEEC
Q 006864 191 AEHGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGM-----------NVIAHD 259 (628)
Q Consensus 191 AE~~l~l~L~~~R~i~~~~~~~~~g~W~~~~~~g~~l~GktiGIIGlG~IG~~vA~~l~~~G~-----------~V~~~d 259 (628)
|=-+++-+++.+| ..|..|...++.|+|.|..|-.+|+.+...++ +++.+|
T Consensus 5 aaV~lAgllnAlk------------------~~g~~l~d~riv~~GAGsAg~gia~ll~~~~~~~Gls~e~A~~~i~~vD 66 (254)
T cd00762 5 ASVAVAGLLAALK------------------VTKKKISEHKVLFNGAGAAALGIANLIVXLXVKEGISKEEACKRIWXVD 66 (254)
T ss_pred HHHHHHHHHHHHH------------------HhCCChhhcEEEEECcCHHHHHHHHHHHHHHHhcCCCHHHHhccEEEEC
Confidence 4445666666666 24567888999999999999999999987765 578888
Q ss_pred CCC---------ChhHHH-----HcCCcccCHHHHhc--cCCEEEEcCCCCccccccccHHHHhcCC---CCcEEEEcCC
Q 006864 260 PYA---------PADKAR-----AVGVELVSFDQALA--TADFISLHMPLNPTTSKIFNDETFAKMK---KGVRIVNVAR 320 (628)
Q Consensus 260 ~~~---------~~~~a~-----~~g~~~~sl~ell~--~aDvV~l~~Plt~~t~~li~~~~l~~mk---~gailIN~aR 320 (628)
+.- ...+.. ...-...+|.|+++ ..|+++=.. ..-++|.++.++.|. +..+|.=.++
T Consensus 67 ~~Gll~~~r~~l~~~~~~~~~~~~~~~~~~~L~eav~~~kptvlIG~S----~~~g~ft~evv~~Ma~~~~~PIIFaLSN 142 (254)
T cd00762 67 RKGLLVKNRKETCPNEYHLARFANPERESGDLEDAVEAAKPDFLIGVS----RVGGAFTPEVIRAXAEINERPVIFALSN 142 (254)
T ss_pred CCCeEeCCCCccCHHHHHHHHHcCcccccCCHHHHHHhhCCCEEEEeC----CCCCCCCHHHHHHHhhcCCCCEEEECCC
Confidence 641 111110 11112348999999 999997632 235899999999998 8899999988
Q ss_pred Cch---hcHHHHHHHHhCCCeeEEEeeccCCCCCCCCCccccCCcEEEcCCCCC
Q 006864 321 GGV---IDEEALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGA 371 (628)
Q Consensus 321 g~~---vde~aL~~aL~~g~i~ga~lDV~~~EP~~~~~~L~~~~nvilTPHig~ 371 (628)
... +..++.+++=+...|.+.|.-.+.++-.......=+..|+++-|=++-
T Consensus 143 Pt~~aE~tpe~a~~~t~G~ai~AtGspf~pv~~~g~~~~~~Q~NN~~iFPGigl 196 (254)
T cd00762 143 PTSKAECTAEEAYTATEGRAIFASGSPFHPVELNGGTYKPGQGNNLYIFPGVAL 196 (254)
T ss_pred cCCccccCHHHHHhhcCCCEEEEECCCCCCcccCCceeecccccceeeccchhh
Confidence 765 344554555444467666665444442111112225679999998874
|
Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut |
| >PRK13010 purU formyltetrahydrofolate deformylase; Reviewed | Back alignment and domain information |
|---|
Probab=95.29 E-value=0.032 Score=58.88 Aligned_cols=49 Identities=12% Similarity=0.160 Sum_probs=40.9
Q ss_pred cEEEEeccCCCCchhhHHhhhhcCCccccceEEeeeecCccEEEEEEeC
Q 006864 559 NLILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVD 607 (628)
Q Consensus 559 ~~Llv~~~D~PGvIa~V~~iL~~~~INIa~m~v~R~~~gg~Al~~i~vD 607 (628)
+.|.+.-+|+||+|++|++.|+++|+||.+++-..+...+.-+|.++++
T Consensus 10 ~iitv~G~Dr~GIVA~Vs~~Lae~g~NI~disq~~d~~~~~ffm~i~~~ 58 (289)
T PRK13010 10 YVLTLACPSAPGIVAAVSGFLAEKGCYIVELTQFDDDESGRFFMRVSFH 58 (289)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHCCCCEEecccccccccCcEEEEEEEE
Confidence 4666778999999999999999999999999987545566777777766
|
|
| >TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC | Back alignment and domain information |
|---|
Probab=95.27 E-value=0.095 Score=54.09 Aligned_cols=85 Identities=18% Similarity=0.180 Sum_probs=59.5
Q ss_pred CeEEEEecChhHHHHHHHHHcCCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEcCCCCccccccccHHHHhcC
Q 006864 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKM 309 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~sl~ell~~aDvV~l~~Plt~~t~~li~~~~l~~m 309 (628)
-++-|+|-|.+++.+|+.++.+|++|.++|++.... .. ..+..++.+....| .+.+..+
T Consensus 101 ~~L~IfGaG~va~~la~la~~lGf~V~v~D~R~~~~--~~---------~~~~~~~~~~~~~~----------~~~~~~~ 159 (246)
T TIGR02964 101 PHVVLFGAGHVGRALVRALAPLPCRVTWVDSREAEF--PE---------DLPDGVATLVTDEP----------EAEVAEA 159 (246)
T ss_pred CEEEEECCcHHHHHHHHHHhcCCCEEEEEeCCcccc--cc---------cCCCCceEEecCCH----------HHHHhcC
Confidence 478999999999999999999999999999874211 00 01123332322111 2333345
Q ss_pred CCCcEEEEcCCCchhcHHHHHHHHhC
Q 006864 310 KKGVRIVNVARGGVIDEEALVRALDS 335 (628)
Q Consensus 310 k~gailIN~aRg~~vde~aL~~aL~~ 335 (628)
.+...+|=+.++.-.|.++|..+|++
T Consensus 160 ~~~t~vvi~th~h~~D~~~L~~aL~~ 185 (246)
T TIGR02964 160 PPGSYFLVLTHDHALDLELCHAALRR 185 (246)
T ss_pred CCCcEEEEEeCChHHHHHHHHHHHhC
Confidence 67778888889999999999999943
|
Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products. |
| >PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.26 E-value=0.044 Score=60.95 Aligned_cols=110 Identities=22% Similarity=0.297 Sum_probs=71.1
Q ss_pred eecCCeEEEEecChhHHHHHHHHHcCCCEEEEECCCCChh------HHHHcCCccc---CHHHHhccCCEEEEcCCCCcc
Q 006864 226 SLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPAD------KARAVGVELV---SFDQALATADFISLHMPLNPT 296 (628)
Q Consensus 226 ~l~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~------~a~~~g~~~~---sl~ell~~aDvV~l~~Plt~~ 296 (628)
++.+|++.|+|.|.+|.++|+.|...|++|.++|+..... .....|+... ..++....+|+|+.+.-..+.
T Consensus 2 ~~~~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~d~vv~~~g~~~~ 81 (450)
T PRK14106 2 ELKGKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKEEDQLKEALEELGELGIELVLGEYPEEFLEGVDLVVVSPGVPLD 81 (450)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcCCEEEeCCcchhHhhcCCEEEECCCCCCC
Confidence 4679999999999999999999999999999999864221 1123354432 234567789999886544333
Q ss_pred cccc----------ccH-HHHhc-CCCCcEEEEcCCCchhcHHHHHHHHhC
Q 006864 297 TSKI----------FND-ETFAK-MKKGVRIVNVARGGVIDEEALVRALDS 335 (628)
Q Consensus 297 t~~l----------i~~-~~l~~-mk~gailIN~aRg~~vde~aL~~aL~~ 335 (628)
...+ +.. +.+.. .+.-.+-|-=+.|+.--.+-|...|+.
T Consensus 82 ~~~~~~a~~~~i~~~~~~~~~~~~~~~~vI~ITGS~GKTTt~~~l~~iL~~ 132 (450)
T PRK14106 82 SPPVVQAHKKGIEVIGEVELAYRFSKAPIVAITGTNGKTTTTTLLGEIFKN 132 (450)
T ss_pred CHHHHHHHHCCCcEEeHHHHHHhhcCCCEEEEeCCCchHHHHHHHHHHHHH
Confidence 2211 111 11222 232234444467888888888888865
|
|
| >COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.26 E-value=0.027 Score=57.23 Aligned_cols=63 Identities=25% Similarity=0.374 Sum_probs=44.2
Q ss_pred CeEEEEecChhHHHHHHHHHcCCCEEEEECCCCCh-hHHHH--cCCccc--------CHHHH-hccCCEEEEcCC
Q 006864 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPA-DKARA--VGVELV--------SFDQA-LATADFISLHMP 292 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~--~g~~~~--------sl~el-l~~aDvV~l~~P 292 (628)
|++.|+|+|+.|..+|+.|...|++|+..|..... ....+ .++..+ .|.++ +.++|.++..+.
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~~~~~v~gd~t~~~~L~~agi~~aD~vva~t~ 75 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLADELDTHVVIGDATDEDVLEEAGIDDADAVVAATG 75 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhhcceEEEEecCCCHHHHHhcCCCcCCEEEEeeC
Confidence 57999999999999999999999999999987522 22111 232211 24444 667777777665
|
|
| >cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains | Back alignment and domain information |
|---|
Probab=95.26 E-value=0.082 Score=43.77 Aligned_cols=60 Identities=17% Similarity=0.259 Sum_probs=45.5
Q ss_pred EEEEeccCCCCchhhHHhhhhcCCccccceEEeeeecCccEEEEEEeCC----CC-CHHHHHHHhc
Q 006864 560 LILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDE----EP-NQDSLKEIGK 620 (628)
Q Consensus 560 ~Llv~~~D~PGvIa~V~~iL~~~~INIa~m~v~R~~~gg~Al~~i~vD~----~~-~~~~l~~L~~ 620 (628)
.+.+..+|+||...+|+.+|+.+|+||...++... .+|.++-++.+.. ++ +++-+++|++
T Consensus 3 ~i~v~~~Dr~gLl~~i~~~l~~~~l~I~~A~i~T~-~~~~v~D~F~v~~~~~~~~~~~~~~~~l~~ 67 (73)
T cd04900 3 EVFIYTPDRPGLFARIAGALDQLGLNILDARIFTT-RDGYALDTFVVLDPDGEPIGERERLARIRE 67 (73)
T ss_pred EEEEEecCCCCHHHHHHHHHHHCCCCeEEeEEEEe-CCCeEEEEEEEECCCCCCCChHHHHHHHHH
Confidence 56677889999999999999999999999999754 4567777777632 22 4555565543
|
This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains. |
| >PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.25 E-value=0.048 Score=60.50 Aligned_cols=70 Identities=23% Similarity=0.216 Sum_probs=54.5
Q ss_pred eeeecCCeEEEEec----------ChhHHHHHHHHHcCC-CEEEEECCCCChhHHH-HcCCcccCHHHHhccCCEEEEcC
Q 006864 224 GVSLVGKTLAVMGF----------GKVGSEVARRAKGLG-MNVIAHDPYAPADKAR-AVGVELVSFDQALATADFISLHM 291 (628)
Q Consensus 224 g~~l~GktiGIIGl----------G~IG~~vA~~l~~~G-~~V~~~d~~~~~~~a~-~~g~~~~sl~ell~~aDvV~l~~ 291 (628)
+.++.|++|+|+|+ ..-...+++.|+..| .+|.+|||........ ...+...++++.++.||+|++++
T Consensus 315 ~~~~~~~~v~vlGlafK~~t~d~r~Sp~~~l~~~L~~~gg~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~ad~vvi~t 394 (415)
T PRK11064 315 DKRASEVKIACFGLAFKPNIDDLRESPAMEIAELIAQWHSGETLVVEPNIHQLPKKLDGLVTLVSLDEALATADVLVMLV 394 (415)
T ss_pred ccCcCCCEEEEEeeEECCCCcchhhChHHHHHHHHHhcCCcEEEEECCCCCchhhhccCceeeCCHHHHHhCCCEEEECC
Confidence 56789999999998 456789999999996 9999999986432111 11223468999999999999998
Q ss_pred CC
Q 006864 292 PL 293 (628)
Q Consensus 292 Pl 293 (628)
+-
T Consensus 395 ~~ 396 (415)
T PRK11064 395 DH 396 (415)
T ss_pred CC
Confidence 73
|
|
| >COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=95.21 E-value=0.042 Score=55.34 Aligned_cols=90 Identities=19% Similarity=0.180 Sum_probs=66.9
Q ss_pred eeeecCCeEEEEecChhHHHHHHHHHcCCCEEEEECCCCChhHH---HHcCCcc----cCHHHHhccCCEEEEcCCCCcc
Q 006864 224 GVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKA---RAVGVEL----VSFDQALATADFISLHMPLNPT 296 (628)
Q Consensus 224 g~~l~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a---~~~g~~~----~sl~ell~~aDvV~l~~Plt~~ 296 (628)
..++.||++.|||-|.+|..=++.+...|.+|+++.|....+.. ...++.. .+.+++ ..+++|+.+++
T Consensus 7 ~~~l~~k~VlvvGgG~va~rKa~~ll~~ga~v~Vvs~~~~~el~~~~~~~~i~~~~~~~~~~~~-~~~~lviaAt~---- 81 (210)
T COG1648 7 FLDLEGKKVLVVGGGSVALRKARLLLKAGADVTVVSPEFEPELKALIEEGKIKWIEREFDAEDL-DDAFLVIAATD---- 81 (210)
T ss_pred EEEcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEcCCccHHHHHHHHhcCcchhhcccChhhh-cCceEEEEeCC----
Confidence 46899999999999999999999999999999999988733321 2222222 233344 44999999886
Q ss_pred ccccccHHHHhcCCCCcEEEEcC
Q 006864 297 TSKIFNDETFAKMKKGVRIVNVA 319 (628)
Q Consensus 297 t~~li~~~~l~~mk~gailIN~a 319 (628)
..-+|+..+..+++-.+++|+.
T Consensus 82 -d~~ln~~i~~~a~~~~i~vNv~ 103 (210)
T COG1648 82 -DEELNERIAKAARERRILVNVV 103 (210)
T ss_pred -CHHHHHHHHHHHHHhCCceecc
Confidence 2335788888888888999974
|
|
| >PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.20 E-value=0.04 Score=61.67 Aligned_cols=109 Identities=26% Similarity=0.378 Sum_probs=70.4
Q ss_pred ecCCeEEEEecChhHHHHHHHHHcCCCEEEEECCCCChh-HHHHcCCcccCH-HHHhccCCEEEEcC--CCC-c----c-
Q 006864 227 LVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPAD-KARAVGVELVSF-DQALATADFISLHM--PLN-P----T- 296 (628)
Q Consensus 227 l~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~-~a~~~g~~~~sl-~ell~~aDvV~l~~--Plt-~----~- 296 (628)
+.|++|.|+|+|.+|.++|+.|+..|.+|.++|...... .....|++.... .+-+.++|+|+..- |.+ + .
T Consensus 7 ~~~~~i~viG~G~~G~~~a~~l~~~G~~v~~~D~~~~~~~~l~~~g~~~~~~~~~~~~~~d~vv~sp~i~~~~~~~~~~v 86 (460)
T PRK01390 7 FAGKTVAVFGLGGSGLATARALVAGGAEVIAWDDNPASRAKAAAAGITTADLRTADWSGFAALVLSPGVPLTHPKPHWVV 86 (460)
T ss_pred cCCCEEEEEeecHhHHHHHHHHHHCCCEEEEECCChhhHHHHHhcCccccCCChhHHcCCCEEEECCCCCccCCcccHHH
Confidence 678999999999999999999999999999999764221 223456653322 23356899887532 211 1 1
Q ss_pred --cc----ccccH-HHHhc-C-----CCCcEEEEcCCCchhcHHHHHHHHhC
Q 006864 297 --TS----KIFND-ETFAK-M-----KKGVRIVNVARGGVIDEEALVRALDS 335 (628)
Q Consensus 297 --t~----~li~~-~~l~~-m-----k~gailIN~aRg~~vde~aL~~aL~~ 335 (628)
++ .++.+ +.+.. + +...+-|.=+.|+.--.+-|...|+.
T Consensus 87 ~~a~~~gi~i~~~~~~~~~~~~~~~~~~~vI~VTGT~GKTTTt~ll~~iL~~ 138 (460)
T PRK01390 87 DLARAAGVEVIGDIELFCRERRAHAPDAPFIAITGTNGKSTTTALIAHILRE 138 (460)
T ss_pred HHHHHcCCcEEeHHHHHHHHhhccCCCCCEEEEeCCCcHHHHHHHHHHHHHh
Confidence 01 11332 22222 2 33455566678999888888888875
|
|
| >COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=95.19 E-value=0.15 Score=55.58 Aligned_cols=141 Identities=13% Similarity=0.165 Sum_probs=88.9
Q ss_pred CeEEEEecChhHHHHHHHHHcCCCEEEEECCCCChh----------------HHHHcC-----Ccc-cCHHHHhccCCEE
Q 006864 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPAD----------------KARAVG-----VEL-VSFDQALATADFI 287 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~----------------~a~~~g-----~~~-~sl~ell~~aDvV 287 (628)
++|.|+|.|-+|...+..+..+|++|+.+|.....- ...+.+ ..+ .+.++.++++|++
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~GHeVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~~~gRl~fTtd~~~a~~~adv~ 80 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAELGHEVVCVDIDESKVELLNKGISPIYEPGLEELLKENLASGRLRFTTDYEEAVKDADVV 80 (414)
T ss_pred CceEEECCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHhCCCCCCcCccHHHHHHhccccCcEEEEcCHHHHHhcCCEE
Confidence 579999999999999999999999999998542111 111111 122 3688899999999
Q ss_pred EEcCCCCcccccccc--------HHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhCCCeeEEEee-ccCCCCCCCCCccc
Q 006864 288 SLHMPLNPTTSKIFN--------DETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALD-VFTEEPPAKDSKLV 358 (628)
Q Consensus 288 ~l~~Plt~~t~~li~--------~~~l~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~ga~lD-V~~~EP~~~~~~L~ 358 (628)
++++|..+...+-++ ++..+.++..+++|+=+.-.+=-.+.+.+-+....-.. -.+ +|.+|=+-..+-++
T Consensus 81 fIavgTP~~~dg~aDl~~V~ava~~i~~~~~~~~vvV~KSTVPvGt~~~v~~~i~~~~~~~-~f~v~~NPEFLREG~Av~ 159 (414)
T COG1004 81 FIAVGTPPDEDGSADLSYVEAVAKDIGEILDGKAVVVIKSTVPVGTTEEVRAKIREENSGK-DFEVASNPEFLREGSAVY 159 (414)
T ss_pred EEEcCCCCCCCCCccHHHHHHHHHHHHhhcCCCeEEEEcCCCCCCchHHHHHHHHhhcccC-CceEecChHHhcCcchhh
Confidence 999996665455444 33455677769999988755555555555444432111 122 35566554433333
Q ss_pred ---cCCcEEEcCCCCCCcHH
Q 006864 359 ---QHENVTVTPHLGASTKE 375 (628)
Q Consensus 359 ---~~~nvilTPHig~~T~e 375 (628)
.-+++++ |..++.
T Consensus 160 D~~~PdRIVi----G~~~~~ 175 (414)
T COG1004 160 DFLYPDRIVI----GVRSER 175 (414)
T ss_pred hccCCCeEEE----ccCChh
Confidence 3467765 455544
|
|
| >PRK00066 ldh L-lactate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=95.18 E-value=0.041 Score=58.79 Aligned_cols=65 Identities=17% Similarity=0.217 Sum_probs=46.0
Q ss_pred cCCeEEEEecChhHHHHHHHHHcCCC--EEEEECCCCChhHHHHcC----------Ccc-cCHHHHhccCCEEEEcCC
Q 006864 228 VGKTLAVMGFGKVGSEVARRAKGLGM--NVIAHDPYAPADKARAVG----------VEL-VSFDQALATADFISLHMP 292 (628)
Q Consensus 228 ~GktiGIIGlG~IG~~vA~~l~~~G~--~V~~~d~~~~~~~a~~~g----------~~~-~sl~ell~~aDvV~l~~P 292 (628)
.+++|+|||.|.+|..+|..+...|. ++..||..........+. +.. .+-.+.+++||+|+++.-
T Consensus 5 ~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~~~~~~~~~~adivIitag 82 (315)
T PRK00066 5 QHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIYAGDYSDCKDADLVVITAG 82 (315)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEEEeCCHHHhCCCCEEEEecC
Confidence 46899999999999999999998886 899999865332211111 111 122356899999999764
|
|
| >cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD | Back alignment and domain information |
|---|
Probab=95.16 E-value=0.073 Score=42.73 Aligned_cols=59 Identities=12% Similarity=0.312 Sum_probs=44.0
Q ss_pred EEEEeccCCCCchhhHHhhhhcCCccccceEEeeeecCccEEEEEEeCCC----CCHHHHHHHhc
Q 006864 560 LILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDEE----PNQDSLKEIGK 620 (628)
Q Consensus 560 ~Llv~~~D~PGvIa~V~~iL~~~~INIa~m~v~R~~~gg~Al~~i~vD~~----~~~~~l~~L~~ 620 (628)
.|.+...|+||.++.++..|.++++||..+...... +.....+.++.+ .+++..++|++
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~~~l~~ 64 (70)
T cd04873 2 VVEVYAPDRPGLLADITRVLADLGLNIHDARISTTG--ERALDVFYVTDSDGRPLDPERIARLEE 64 (70)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHCCCeEEEEEEeecC--CEEEEEEEEECCCCCcCCHHHHHHHHH
Confidence 355677899999999999999999999999987543 266666666443 34456666554
|
This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted t |
| >PRK12548 shikimate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.14 E-value=0.067 Score=56.41 Aligned_cols=37 Identities=19% Similarity=0.294 Sum_probs=33.3
Q ss_pred eecCCeEEEEecChhHHHHHHHHHcCCCE-EEEECCCC
Q 006864 226 SLVGKTLAVMGFGKVGSEVARRAKGLGMN-VIAHDPYA 262 (628)
Q Consensus 226 ~l~GktiGIIGlG~IG~~vA~~l~~~G~~-V~~~d~~~ 262 (628)
.+.||++.|+|.|.+|++++..|...|.+ |.++++..
T Consensus 123 ~~~~k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~ 160 (289)
T PRK12548 123 DVKGKKLTVIGAGGAATAIQVQCALDGAKEITIFNIKD 160 (289)
T ss_pred CcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCc
Confidence 46789999999999999999999999986 99998864
|
|
| >cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins | Back alignment and domain information |
|---|
Probab=95.12 E-value=0.045 Score=57.86 Aligned_cols=109 Identities=17% Similarity=0.233 Sum_probs=62.8
Q ss_pred EEEEecChhHHHHHHHHHcCCC-EEEEECCCCChhHHHHc---------CC----cc-cCHHHHhccCCEEEEcCCCCcc
Q 006864 232 LAVMGFGKVGSEVARRAKGLGM-NVIAHDPYAPADKARAV---------GV----EL-VSFDQALATADFISLHMPLNPT 296 (628)
Q Consensus 232 iGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~~~~~a~~~---------g~----~~-~sl~ell~~aDvV~l~~Plt~~ 296 (628)
|+|||.|.+|..+|..+...|. +|+.+|..........+ +. .. .+. +.++.||+|+++... +.
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e~~~~g~~~dl~~~~~~~~~~~~I~~t~d~-~~l~dADiVIit~g~-p~ 78 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVEGLPQGKALDISQAAPILGSDTKVTGTNDY-EDIAGSDVVVITAGI-PR 78 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCCcHHHHHHHHHHHhhhhcCCCeEEEEcCCH-HHhCCCCEEEEecCC-CC
Confidence 6899999999999999886654 99999987533211111 11 11 244 458999999997742 11
Q ss_pred cccc------------cc--HHHHhcCCCCcEEEEcCCCchhcHHHHHHHH--hCCCeeEEE
Q 006864 297 TSKI------------FN--DETFAKMKKGVRIVNVARGGVIDEEALVRAL--DSGVVAQAA 342 (628)
Q Consensus 297 t~~l------------i~--~~~l~~mk~gailIN~aRg~~vde~aL~~aL--~~g~i~ga~ 342 (628)
..+. +. ...+....+.+++|+.+-.-=+-...+.+.. ...++.|.+
T Consensus 79 ~~~~~r~e~~~~n~~i~~~i~~~i~~~~p~~~iIv~sNP~di~t~~~~~~s~~~~~rviGlg 140 (300)
T cd01339 79 KPGMSRDDLLGTNAKIVKEVAENIKKYAPNAIVIVVTNPLDVMTYVAYKASGFPRNRVIGMA 140 (300)
T ss_pred CcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHhCCCHHHEEEec
Confidence 1111 10 1223344567788887743333333444432 223566655
|
Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas |
| >PRK12562 ornithine carbamoyltransferase subunit F; Provisional | Back alignment and domain information |
|---|
Probab=95.10 E-value=0.37 Score=51.96 Aligned_cols=94 Identities=20% Similarity=0.232 Sum_probs=63.4
Q ss_pred eecCCeEEEEecC--hhHHHHHHHHHcCCCEEEEECCCC--Chh----H----HHHcCCc--c-cCHHHHhccCCEEEEc
Q 006864 226 SLVGKTLAVMGFG--KVGSEVARRAKGLGMNVIAHDPYA--PAD----K----ARAVGVE--L-VSFDQALATADFISLH 290 (628)
Q Consensus 226 ~l~GktiGIIGlG--~IG~~vA~~l~~~G~~V~~~d~~~--~~~----~----a~~~g~~--~-~sl~ell~~aDvV~l~ 290 (628)
.+.|++|+++|-+ ++..+++..+..+|++|.+..|.. +.+ . ++..|.. . .++++.++.||+|..-
T Consensus 153 ~l~gl~va~vGD~~~~v~~S~~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvyt~ 232 (334)
T PRK12562 153 AFNEMTLVYAGDARNNMGNSMLEAAALTGLDLRLVAPQACWPEASLVAECSALAQKHGGKITLTEDIAAGVKGADFIYTD 232 (334)
T ss_pred CcCCcEEEEECCCCCCHHHHHHHHHHHcCCEEEEECCcccCCcHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEc
Confidence 4789999999986 789999999999999999887753 211 1 1223432 2 4899999999999885
Q ss_pred CC----CCcc---------ccccccHHHHhcC-CCCcEEEEcC
Q 006864 291 MP----LNPT---------TSKIFNDETFAKM-KKGVRIVNVA 319 (628)
Q Consensus 291 ~P----lt~~---------t~~li~~~~l~~m-k~gailIN~a 319 (628)
.= ...+ -...++.+.++.. |++++|.-|.
T Consensus 233 ~w~sm~~~~~~~~~~~~~~~~y~v~~ell~~a~~~~~i~mHcL 275 (334)
T PRK12562 233 VWVSMGEPKEKWAERIALLRGYQVNSKMMALTGNPQVKFLHCL 275 (334)
T ss_pred CccccccchhhHHHHHHhccCCcCCHHHHHhhcCCCCEEECCC
Confidence 31 0000 1233566666664 6777777664
|
|
| >PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed | Back alignment and domain information |
|---|
Probab=95.10 E-value=0.045 Score=59.67 Aligned_cols=61 Identities=26% Similarity=0.392 Sum_probs=45.1
Q ss_pred CCeEEEEecChhHHHHHHHHHcCCCEEEEECCCCChhHHHHcC----Cccc---CHHHHhccCCEEEE
Q 006864 229 GKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVG----VELV---SFDQALATADFISL 289 (628)
Q Consensus 229 GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g----~~~~---sl~ell~~aDvV~l 289 (628)
.++|||||-|..|+.++..++.+|++|+++|+........-.. ..+. .+.++++.||+|+.
T Consensus 2 ~~~igilG~Gql~~ml~~aa~~lG~~v~~~d~~~~~pa~~~ad~~~~~~~~D~~~l~~~a~~~dvit~ 69 (372)
T PRK06019 2 MKTIGIIGGGQLGRMLALAAAPLGYKVIVLDPDPDSPAAQVADEVIVADYDDVAALRELAEQCDVITY 69 (372)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCCCchhHhCceEEecCCCCHHHHHHHHhcCCEEEe
Confidence 3799999999999999999999999999999875321111111 1122 36778899999854
|
|
| >PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.09 E-value=0.048 Score=61.72 Aligned_cols=109 Identities=20% Similarity=0.263 Sum_probs=69.0
Q ss_pred ecCCeEEEEecChhHHHHHHHHHcCCCEEEEECCCCCh---hHHHHc--CCccc--C-HHHHhccCCEEEEc--CCCC--
Q 006864 227 LVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPA---DKARAV--GVELV--S-FDQALATADFISLH--MPLN-- 294 (628)
Q Consensus 227 l~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~---~~a~~~--g~~~~--s-l~ell~~aDvV~l~--~Plt-- 294 (628)
+.++++.|+|+|..|.++|+.|+..|.+|.++|..... ....+. |+... + ..+.+..+|+|+.. +|.+
T Consensus 5 ~~~~~i~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~~~~~~~~L~~~~~~~~~~~g~~~~~~~~~~d~vv~sp~I~~~~~ 84 (498)
T PRK02006 5 LQGPMVLVLGLGESGLAMARWCARHGARLRVADTREAPPNLAALRAELPDAEFVGGPFDPALLDGVDLVALSPGLSPLEA 84 (498)
T ss_pred cCCCEEEEEeecHhHHHHHHHHHHCCCEEEEEcCCCCchhHHHHHhhcCCcEEEeCCCchhHhcCCCEEEECCCCCCccc
Confidence 56889999999999999999999999999999975422 112233 33322 1 23556789999986 4432
Q ss_pred ---cc-------ccccccHH-HHh-cC--------CCCcEEEEcCCCchhcHHHHHHHHhC
Q 006864 295 ---PT-------TSKIFNDE-TFA-KM--------KKGVRIVNVARGGVIDEEALVRALDS 335 (628)
Q Consensus 295 ---~~-------t~~li~~~-~l~-~m--------k~gailIN~aRg~~vde~aL~~aL~~ 335 (628)
|+ ...++.+- .+. .+ ++-.+-|-=+-|+.--..-|...|+.
T Consensus 85 ~~~~~~~~a~~~~i~v~~~~e~~~~~~~~l~~~~~~~~~I~VTGTnGKTTTt~ml~~iL~~ 145 (498)
T PRK02006 85 ALAPLVAAARERGIPVWGEIELFAQALAALGASGYAPKVLAITGTNGKTTTTALTGLLCER 145 (498)
T ss_pred ccCHHHHHHHHCCCcEEEHHHHHHHHHhhhccccCCCCEEEEECCCcHHHHHHHHHHHHHH
Confidence 11 11223222 211 12 12345555567888888878888865
|
|
| >PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase | Back alignment and domain information |
|---|
Probab=95.06 E-value=0.089 Score=60.19 Aligned_cols=39 Identities=33% Similarity=0.476 Sum_probs=35.3
Q ss_pred eeeecCCeEEEEecChhHHHHHHHHHcCCCEEEEECCCC
Q 006864 224 GVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA 262 (628)
Q Consensus 224 g~~l~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~ 262 (628)
+..+.||++.|+|.|.+|++++..|...|++|+++++..
T Consensus 374 ~~~~~~k~vlIlGaGGagrAia~~L~~~G~~V~i~nR~~ 412 (529)
T PLN02520 374 GSPLAGKLFVVIGAGGAGKALAYGAKEKGARVVIANRTY 412 (529)
T ss_pred ccCCCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 446789999999999999999999999999999999863
|
|
| >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed | Back alignment and domain information |
|---|
Probab=95.05 E-value=0.05 Score=60.40 Aligned_cols=65 Identities=18% Similarity=0.251 Sum_probs=48.6
Q ss_pred CeEEEEecChhHHHHHHHHHcCCCEEEEECCCCCh-hHHHH-cCCcc--------cCHHHH-hccCCEEEEcCCCC
Q 006864 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPA-DKARA-VGVEL--------VSFDQA-LATADFISLHMPLN 294 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~-~g~~~--------~sl~el-l~~aDvV~l~~Plt 294 (628)
+++.|+|+|.+|+.+|+.|...|++|+++|+.... +..++ .++.. ..++++ +.++|.|+++++-.
T Consensus 1 m~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~a~~vi~~~~~~ 76 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLSGENNDVTVIDTDEERLRRLQDRLDVRTVVGNGSSPDVLREAGAEDADLLIAVTDSD 76 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhcCEEEEEeCCCCHHHHHHcCCCcCCEEEEecCCh
Confidence 47899999999999999999999999999886422 22222 34322 135566 78999999998843
|
|
| >cd05293 LDH_1 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=95.04 E-value=0.14 Score=54.68 Aligned_cols=111 Identities=16% Similarity=0.147 Sum_probs=65.2
Q ss_pred CeEEEEecChhHHHHHHHHHcCC--CEEEEECCCCChhH--HHHc-------C---Ccc-cCHHHHhccCCEEEEcCCCC
Q 006864 230 KTLAVMGFGKVGSEVARRAKGLG--MNVIAHDPYAPADK--ARAV-------G---VEL-VSFDQALATADFISLHMPLN 294 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~G--~~V~~~d~~~~~~~--a~~~-------g---~~~-~sl~ell~~aDvV~l~~Plt 294 (628)
.+|+|||.|.+|..+|..|...| -++..||....... +.++ . +.. .+.++ +++||+|+++.-..
T Consensus 4 ~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~~v~~~~dy~~-~~~adivvitaG~~ 82 (312)
T cd05293 4 NKVTVVGVGQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIEADKDYSV-TANSKVVIVTAGAR 82 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhccCCCCEEEECCCHHH-hCCCCEEEECCCCC
Confidence 58999999999999999987655 47999997653221 1111 0 111 24554 89999999965432
Q ss_pred --c-cccc-cc--cH-------HHHhcCCCCcEEEEcCCCchhcHHHHHHH--HhCCCeeEE
Q 006864 295 --P-TTSK-IF--ND-------ETFAKMKKGVRIVNVARGGVIDEEALVRA--LDSGVVAQA 341 (628)
Q Consensus 295 --~-~t~~-li--~~-------~~l~~mk~gailIN~aRg~~vde~aL~~a--L~~g~i~ga 341 (628)
+ +++. ++ |. +.+....+.+++++++-.-=+....+.+. +...++.|.
T Consensus 83 ~k~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvsNP~d~~t~~~~k~sg~p~~~viG~ 144 (312)
T cd05293 83 QNEGESRLDLVQRNVDIFKGIIPKLVKYSPNAILLVVSNPVDIMTYVAWKLSGLPKHRVIGS 144 (312)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEccChHHHHHHHHHHHhCCCHHHEEec
Confidence 1 2331 11 11 23444577899999983222222333333 334465555
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >cd05292 LDH_2 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=95.04 E-value=0.042 Score=58.43 Aligned_cols=64 Identities=20% Similarity=0.193 Sum_probs=46.2
Q ss_pred CeEEEEecChhHHHHHHHHHcCC--CEEEEECCCCChhH--HHHcC-Cc---------ccCHHHHhccCCEEEEcCCCC
Q 006864 230 KTLAVMGFGKVGSEVARRAKGLG--MNVIAHDPYAPADK--ARAVG-VE---------LVSFDQALATADFISLHMPLN 294 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~G--~~V~~~d~~~~~~~--a~~~g-~~---------~~sl~ell~~aDvV~l~~Plt 294 (628)
++|+|||.|.+|..+|..|...| .+|..+|+...... +.++. .. ..+. +.++.||+|+++++..
T Consensus 1 mkI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~i~~~d~-~~l~~aDiViita~~~ 78 (308)
T cd05292 1 MKVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIYAGDY-ADCKGADVVVITAGAN 78 (308)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHccccccCCeEEeeCCH-HHhCCCCEEEEccCCC
Confidence 37999999999999999998888 58999998653211 11111 11 0134 5689999999999864
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus | Back alignment and domain information |
|---|
Probab=95.02 E-value=0.06 Score=48.06 Aligned_cols=84 Identities=20% Similarity=0.459 Sum_probs=55.2
Q ss_pred EEEEecChhHHHHHHHHHcCCCEEEEECCCC-ChhHHHHcCCccc-----C---HHH-HhccCCEEEEcCCCCccccccc
Q 006864 232 LAVMGFGKVGSEVARRAKGLGMNVIAHDPYA-PADKARAVGVELV-----S---FDQ-ALATADFISLHMPLNPTTSKIF 301 (628)
Q Consensus 232 iGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~g~~~~-----s---l~e-ll~~aDvV~l~~Plt~~t~~li 301 (628)
+-|+|+|.+|+.+++.|+..+.+|++.|... ..+.+.+.|+..+ + |++ -+.+||.|++..+-. ..++.
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~~d--~~n~~ 78 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREEGVEVIYGDATDPEVLERAGIEKADAVVILTDDD--EENLL 78 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTTSEEEES-TTSHHHHHHTTGGCESEEEEESSSH--HHHHH
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhcccccccccchhhhHHhhcCccccCEEEEccCCH--HHHHH
Confidence 4689999999999999999777999998775 2344555665432 2 222 357899999998833 23333
Q ss_pred cHHHHhcCCCCcEEEE
Q 006864 302 NDETFAKMKKGVRIVN 317 (628)
Q Consensus 302 ~~~~l~~mk~gailIN 317 (628)
-...++.+-+...++-
T Consensus 79 ~~~~~r~~~~~~~ii~ 94 (116)
T PF02254_consen 79 IALLARELNPDIRIIA 94 (116)
T ss_dssp HHHHHHHHTTTSEEEE
T ss_pred HHHHHHHHCCCCeEEE
Confidence 3444455555555553
|
The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A .... |
| >TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type | Back alignment and domain information |
|---|
Probab=95.01 E-value=0.037 Score=58.12 Aligned_cols=69 Identities=13% Similarity=0.095 Sum_probs=49.2
Q ss_pred eecCCeEEEEecChhHHHHHHHHHcCCC-EEEEECCCCChh--HHHHcC----Cccc----CHHHHhccCCEEEEcCCCC
Q 006864 226 SLVGKTLAVMGFGKVGSEVARRAKGLGM-NVIAHDPYAPAD--KARAVG----VELV----SFDQALATADFISLHMPLN 294 (628)
Q Consensus 226 ~l~GktiGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~~~~--~a~~~g----~~~~----sl~ell~~aDvV~l~~Plt 294 (628)
.+.||++.|||.|..|++++..|...|+ +|.+++|..... .+...+ +... ++.+.+.++|+|+.++|..
T Consensus 122 ~~~~k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~DiVInaTp~g 201 (282)
T TIGR01809 122 PLAGFRGLVIGAGGTSRAAVYALASLGVTDITVINRNPDKLSRLVDLGVQVGVITRLEGDSGGLAIEKAAEVLVSTVPAD 201 (282)
T ss_pred ccCCceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhhhcCcceeccchhhhhhcccCCCEEEECCCCC
Confidence 3678999999999999999999999997 699999874221 122211 1111 2335567889999998864
|
This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway. |
| >cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=95.00 E-value=0.051 Score=57.69 Aligned_cols=64 Identities=17% Similarity=0.214 Sum_probs=45.4
Q ss_pred CeEEEEecChhHHHHHHHHHcCC--CEEEEECCCCChhH--HHHc-------CC--cc-cCHHHHhccCCEEEEcCCC
Q 006864 230 KTLAVMGFGKVGSEVARRAKGLG--MNVIAHDPYAPADK--ARAV-------GV--EL-VSFDQALATADFISLHMPL 293 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~G--~~V~~~d~~~~~~~--a~~~-------g~--~~-~sl~ell~~aDvV~l~~Pl 293 (628)
++|+|||.|.+|+.+|..|...| .+|..+|+...... +.++ +. .. ..-.+.+++||+|+++...
T Consensus 1 ~kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~~~~~~~l~~aDIVIitag~ 78 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFLPSPVKIKAGDYSDCKDADIVVITAGA 78 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEEcCCHHHhCCCCEEEEccCC
Confidence 47999999999999999999888 48999998653322 1111 11 11 1223457899999998875
|
L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine |
| >PRK07232 bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed | Back alignment and domain information |
|---|
Probab=94.99 E-value=0.97 Score=53.73 Aligned_cols=176 Identities=19% Similarity=0.165 Sum_probs=115.6
Q ss_pred cCceEEcCCCCChhhHHHHHHHHHHHHHHchhHHHHHHHcCcccccccceeeecCCeEEEEecChhHHHHHHHHHcCCC-
Q 006864 175 FGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGM- 253 (628)
Q Consensus 175 ~GI~V~n~p~~~~~avAE~~l~l~L~~~R~i~~~~~~~~~g~W~~~~~~g~~l~GktiGIIGlG~IG~~vA~~l~~~G~- 253 (628)
..|+|.|.-- .-+|=-+++-+++.+| ..|..+...+|.|.|.|.-|-.+|+.|...|+
T Consensus 152 ~~ip~f~DD~---~GTa~v~lA~l~na~~------------------~~~~~~~~~~iv~~GaGaag~~~a~~l~~~G~~ 210 (752)
T PRK07232 152 MDIPVFHDDQ---HGTAIISAAALLNALE------------------LVGKKIEDVKIVVSGAGAAAIACLNLLVALGAK 210 (752)
T ss_pred cCCCeecccc---chHHHHHHHHHHHHHH------------------HhCCChhhcEEEEECccHHHHHHHHHHHHcCCC
Confidence 4799999832 2344456666776666 24567888999999999999999999999998
Q ss_pred --EEEEECCCC--Ch------hHHHH-c--CCcccCHHHHhccCCEEEEcCCCCccccccccHHHHhcCCCCcEEEEcCC
Q 006864 254 --NVIAHDPYA--PA------DKARA-V--GVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVAR 320 (628)
Q Consensus 254 --~V~~~d~~~--~~------~~a~~-~--g~~~~sl~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aR 320 (628)
+++.+|..- .. ...+. + .-...+|.|+++.+|+++=. . +.+.+.++.++.|.+..+|.=.+.
T Consensus 211 ~~~i~~~D~~G~i~~~r~~~~~~~k~~~a~~~~~~~l~~~i~~~~v~iG~-s----~~g~~~~~~v~~M~~~piifalsN 285 (752)
T PRK07232 211 KENIIVCDSKGVIYKGRTEGMDEWKAAYAVDTDARTLAEAIEGADVFLGL-S----AAGVLTPEMVKSMADNPIIFALAN 285 (752)
T ss_pred cccEEEEcCCCeecCCCcccccHHHHHHhccCCCCCHHHHHcCCCEEEEc-C----CCCCCCHHHHHHhccCCEEEecCC
Confidence 788888541 11 11111 1 11234899999999988653 2 258999999999999999999998
Q ss_pred Cchh-cHHHHHHHHhCCCeeEEEeeccCCCCCCCCCccccCCcEEEcCCCCC---------CcHHHHHHHHHHHHHH
Q 006864 321 GGVI-DEEALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGA---------STKEAQEGVAIEIAEA 387 (628)
Q Consensus 321 g~~v-de~aL~~aL~~g~i~ga~lDV~~~EP~~~~~~L~~~~nvilTPHig~---------~T~ea~~~~~~~~~~~ 387 (628)
...- ..+..+++ ..|.|.+.|- ...| =+..|+++-|-++- -|.+.+...+..+++.
T Consensus 286 P~~E~~p~~a~~~-~~~~i~atGr---s~~p-------nQ~NN~~~FPgi~~g~l~~~a~~i~~~m~~aaa~ala~~ 351 (752)
T PRK07232 286 PDPEITPEEAKAV-RPDAIIATGR---SDYP-------NQVNNVLCFPYIFRGALDVGATTINEEMKLAAVRAIAEL 351 (752)
T ss_pred CCccCCHHHHHHh-cCCEEEEECC---cCCC-------CcccceeecchhhHHHHHcCCccCCHHHHHHHHHHHHhh
Confidence 7653 22332332 2245655551 1112 14468888887653 3556555555544443
|
|
| >PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=94.94 E-value=0.19 Score=55.79 Aligned_cols=110 Identities=16% Similarity=0.195 Sum_probs=71.4
Q ss_pred eecCCeEEEEecChhHHHHHHHHHcCCCEEEEECCCCCh-----hHHHHcCCccc---CHHHHhcc-CCEEEEcCCCCcc
Q 006864 226 SLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPA-----DKARAVGVELV---SFDQALAT-ADFISLHMPLNPT 296 (628)
Q Consensus 226 ~l~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-----~~a~~~g~~~~---sl~ell~~-aDvV~l~~Plt~~ 296 (628)
++.||++.|+|.|.+|.++|+.|+..|++|.++|..... ....+.|+... ...+++.. +|+|+..--..+.
T Consensus 2 ~~~~k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~d~vV~s~gi~~~ 81 (447)
T PRK02472 2 EYQNKKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKPFSENPEAQELLEEGIKVICGSHPLELLDEDFDLMVKNPGIPYT 81 (447)
T ss_pred CcCCCEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCCccchhHHHHHHhcCCEEEeCCCCHHHhcCcCCEEEECCCCCCC
Confidence 367899999999999999999999999999999965311 22234465432 23344554 8988775522221
Q ss_pred c----------cccccHHHH-hcC-CCCcEEEEcCCCchhcHHHHHHHHhC
Q 006864 297 T----------SKIFNDETF-AKM-KKGVRIVNVARGGVIDEEALVRALDS 335 (628)
Q Consensus 297 t----------~~li~~~~l-~~m-k~gailIN~aRg~~vde~aL~~aL~~ 335 (628)
. ..++.+.+| ..+ +...+-|--+.|+.--.+-+...|+.
T Consensus 82 ~~~~~~a~~~~i~v~~~~el~~~~~~~~~I~VTGT~GKTTTt~ll~~iL~~ 132 (447)
T PRK02472 82 NPMVEKALEKGIPIITEVELAYLISEAPIIGITGSNGKTTTTTLIGEMLKA 132 (447)
T ss_pred CHHHHHHHHCCCcEEeHHHHHHHhcCCCEEEEeCCCchHHHHHHHHHHHHH
Confidence 1 122333333 233 33455566678888888888888865
|
|
| >PRK12749 quinate/shikimate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=94.87 E-value=0.11 Score=54.98 Aligned_cols=70 Identities=23% Similarity=0.384 Sum_probs=48.9
Q ss_pred eeecCCeEEEEecChhHHHHHHHHHcCCC-EEEEECCCCC-hhHH----HHcC------CcccCHH------HHhccCCE
Q 006864 225 VSLVGKTLAVMGFGKVGSEVARRAKGLGM-NVIAHDPYAP-ADKA----RAVG------VELVSFD------QALATADF 286 (628)
Q Consensus 225 ~~l~GktiGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~~-~~~a----~~~g------~~~~sl~------ell~~aDv 286 (628)
..+.||++.|+|.|..+++++..|...|. +|.+++|... .+++ ...+ +...+++ +.+.++|+
T Consensus 120 ~~~~~k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt~~~~~ka~~la~~~~~~~~~~~~~~~~~~~~~l~~~~~~aDi 199 (288)
T PRK12749 120 FDIKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTVTDLADQQAFAEALASADI 199 (288)
T ss_pred CCcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCccHHHHHHHHHHHhhhccCceEEEechhhhhhhhhhcccCCE
Confidence 45788999999999999999999988886 7999998742 2222 1111 1122332 34567889
Q ss_pred EEEcCCCC
Q 006864 287 ISLHMPLN 294 (628)
Q Consensus 287 V~l~~Plt 294 (628)
|+.++|+-
T Consensus 200 vINaTp~G 207 (288)
T PRK12749 200 LTNGTKVG 207 (288)
T ss_pred EEECCCCC
Confidence 98888853
|
|
| >PRK13376 pyrB bifunctional aspartate carbamoyltransferase catalytic subunit/aspartate carbamoyltransferase regulatory subunit; Provisional | Back alignment and domain information |
|---|
Probab=94.86 E-value=0.6 Score=53.21 Aligned_cols=61 Identities=21% Similarity=0.234 Sum_probs=46.7
Q ss_pred eecCCeEEEEec---ChhHHHHHHHHHcCC-CEEEEECCCC---Chh---HHHHcCCc--c-cCHHHHhccCCE
Q 006864 226 SLVGKTLAVMGF---GKVGSEVARRAKGLG-MNVIAHDPYA---PAD---KARAVGVE--L-VSFDQALATADF 286 (628)
Q Consensus 226 ~l~GktiGIIGl---G~IG~~vA~~l~~~G-~~V~~~d~~~---~~~---~a~~~g~~--~-~sl~ell~~aDv 286 (628)
.+.|++|+++|= |++..+++..+..|| |+|....|.. +.+ .+++.|.. . .++++.+++||+
T Consensus 171 ~l~glkVa~vGD~~~~rva~Sl~~~l~~~g~~~v~l~~P~~~~~p~~~~~~a~~~G~~v~i~~d~~eav~~AD~ 244 (525)
T PRK13376 171 DNSFIHIALVGDLLHGRTVHSKVNGLKIFKNVKVDLIAPEELAMPEHYVEKMKKNGFEVRIFSSIEEYLSQKDV 244 (525)
T ss_pred CcCCCEEEEECCCCCCcHHHHHHHHHHhcCCcEEEEECCccccCCHHHHHHHHHcCCeEEEEcCHHHHhccCCc
Confidence 477999999998 689999999999998 9999887743 222 23344543 2 489999999995
|
|
| >COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=94.84 E-value=0.08 Score=57.67 Aligned_cols=66 Identities=36% Similarity=0.499 Sum_probs=52.4
Q ss_pred ecCCeEEEEecC----------hhHHHHHHHHHcCCCEEEEECCCCChhHHHHc-CCccc-CHHHHhccCCEEEEcCC
Q 006864 227 LVGKTLAVMGFG----------KVGSEVARRAKGLGMNVIAHDPYAPADKARAV-GVELV-SFDQALATADFISLHMP 292 (628)
Q Consensus 227 l~GktiGIIGlG----------~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~-g~~~~-sl~ell~~aDvV~l~~P 292 (628)
|.|||+||+|+- .--..++++|+..|.+|.+|||-......... ++.+. ++++.+++||+++++..
T Consensus 308 l~Gk~iavlgLafKpnTDD~ReSpa~~vi~~L~~~Ga~V~aYDP~a~~~~~~~~~~~~~~~~~~~~~~~aDaivi~te 385 (414)
T COG1004 308 LKGKTIAVLGLAFKPNTDDMRESPALDIIKRLQEKGAEVIAYDPVAMENAFRNFPDVELESDAEEALKGADAIVINTE 385 (414)
T ss_pred CCCcEEEEEEEeecCCCccchhchHHHHHHHHHHCCCEEEEECchhhHHHHhcCCCceEeCCHHHHHhhCCEEEEecc
Confidence 999999999984 34678999999999999999998644333222 24444 79999999999999764
|
|
| >PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional | Back alignment and domain information |
|---|
Probab=94.84 E-value=0.059 Score=58.20 Aligned_cols=37 Identities=19% Similarity=0.287 Sum_probs=33.5
Q ss_pred eeecCCeEEEEecChhHHHHHHHHHcCCC-EEEEECCC
Q 006864 225 VSLVGKTLAVMGFGKVGSEVARRAKGLGM-NVIAHDPY 261 (628)
Q Consensus 225 ~~l~GktiGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~ 261 (628)
..|++++|.|||+|.+|..+|+.|...|. ++..+|+.
T Consensus 20 ~~L~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D 57 (338)
T PRK12475 20 RKIREKHVLIVGAGALGAANAEALVRAGIGKLTIADRD 57 (338)
T ss_pred HhhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 46899999999999999999999999997 78888875
|
|
| >cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein) | Back alignment and domain information |
|---|
Probab=94.79 E-value=0.11 Score=43.21 Aligned_cols=58 Identities=21% Similarity=0.191 Sum_probs=44.2
Q ss_pred EEEeccCCCCchhhHHhhhhcCCccccceEEeeeecCccEEEEEEeCC-----CC-CHHHHHHHhc
Q 006864 561 ILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDE-----EP-NQDSLKEIGK 620 (628)
Q Consensus 561 Llv~~~D~PGvIa~V~~iL~~~~INIa~m~v~R~~~gg~Al~~i~vD~-----~~-~~~~l~~L~~ 620 (628)
+=+.-+|+||.++.|+..|.++|+||-..++.+. ++.++.++.+.+ +. +++-+++|++
T Consensus 3 ~~v~~~Dr~gLl~~i~~~l~~~~lnI~~A~i~t~--~~~~~d~f~V~d~~~~~~~~~~~~~~~i~~ 66 (74)
T cd04925 3 IELTGTDRPGLLSEVFAVLADLHCNVVEARAWTH--NGRLACVIYVRDEETGAPIDDPIRLASIED 66 (74)
T ss_pred EEEEECCCCCHHHHHHHHHHHCCCcEEEEEEEEE--CCEEEEEEEEEcCcCCCCCCCHHHHHHHHH
Confidence 3345689999999999999999999999999854 778888887632 12 4455555543
|
This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains. |
| >cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme | Back alignment and domain information |
|---|
Probab=94.79 E-value=0.066 Score=39.32 Aligned_cols=56 Identities=21% Similarity=0.316 Sum_probs=41.4
Q ss_pred EeccCCCCchhhHHhhhhcCCccccceEEeeeecCccEEEEEEeCCC-CCHHHHHHH
Q 006864 563 CRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDEE-PNQDSLKEI 618 (628)
Q Consensus 563 v~~~D~PGvIa~V~~iL~~~~INIa~m~v~R~~~gg~Al~~i~vD~~-~~~~~l~~L 618 (628)
+..+|+||.+.++.+.|.++++||..+........+..-+.+.++.. ..+.++++|
T Consensus 3 i~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 59 (60)
T cd02116 3 VSGPDRPGLLAKVLSVLAEAGINITSIEQRTSGDGGEADIFIVVDGDGDLEKLLEAL 59 (60)
T ss_pred EEecCCCchHHHHHHHHHHCCCcEEEEEeEEcCCCCeEEEEEEEechHHHHHHHHHh
Confidence 55678999999999999999999999998765444556666666664 333444443
|
Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-p |
| >PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=94.77 E-value=0.066 Score=60.31 Aligned_cols=111 Identities=17% Similarity=0.200 Sum_probs=71.7
Q ss_pred eeecCCeEEEEecChhHHHHHHHHHcCCCEEEEECCCCChh--HHHHcCCccc---CHHHHhccCCEEEEcC--CC-Ccc
Q 006864 225 VSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPAD--KARAVGVELV---SFDQALATADFISLHM--PL-NPT 296 (628)
Q Consensus 225 ~~l~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~--~a~~~g~~~~---sl~ell~~aDvV~l~~--Pl-t~~ 296 (628)
..+.+|++.|+|+|..|+++|+.|...|++|.++|+..... .....|++.. ...+.+.++|+|+..- |. +++
T Consensus 11 ~~~~~~~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~d~vV~Spgi~~~~p~ 90 (473)
T PRK00141 11 PQELSGRVLVAGAGVSGRGIAAMLSELGCDVVVADDNETARHKLIEVTGVADISTAEASDQLDSFSLVVTSPGWRPDSPL 90 (473)
T ss_pred ccccCCeEEEEccCHHHHHHHHHHHHCCCEEEEECCChHHHHHHHHhcCcEEEeCCCchhHhcCCCEEEeCCCCCCCCHH
Confidence 35788999999999999999999999999999999754222 1234576543 2234567899987753 22 221
Q ss_pred c-------cccccHHHHhc-------C--CCCcEEEEcCCCchhcHHHHHHHHhC
Q 006864 297 T-------SKIFNDETFAK-------M--KKGVRIVNVARGGVIDEEALVRALDS 335 (628)
Q Consensus 297 t-------~~li~~~~l~~-------m--k~gailIN~aRg~~vde~aL~~aL~~ 335 (628)
. ..++.+-.+.. + +...+-|-=+-|+.--..-|...|+.
T Consensus 91 ~~~a~~~gi~v~~~~el~~~~~~~~~~~~~~~vIaVTGTnGKTTTt~ml~~iL~~ 145 (473)
T PRK00141 91 LVDAQSQGLEVIGDVELAWRLDQAGVFGEPRTWLAVTGTNGKTTTTAMLAAMMQE 145 (473)
T ss_pred HHHHHHCCCceeeHHHHHHHhhhhhccCCCCCEEEEeCCCcHHHHHHHHHHHHHh
Confidence 1 12233333321 1 11244455567888888888888875
|
|
| >PRK08300 acetaldehyde dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=94.77 E-value=0.1 Score=55.37 Aligned_cols=86 Identities=17% Similarity=0.229 Sum_probs=58.5
Q ss_pred CCeEEEEecChhHHHHHHHHHc-CCCEEEE-ECCCCC---hhHHHHcCCcc--cCHHHHhc-----cCCEEEEcCCCCcc
Q 006864 229 GKTLAVMGFGKVGSEVARRAKG-LGMNVIA-HDPYAP---ADKARAVGVEL--VSFDQALA-----TADFISLHMPLNPT 296 (628)
Q Consensus 229 GktiGIIGlG~IG~~vA~~l~~-~G~~V~~-~d~~~~---~~~a~~~g~~~--~sl~ell~-----~aDvV~l~~Plt~~ 296 (628)
..++||||.|+||+..+..+.. -++++.+ +|+... ...+++.|+.. .+++++++ +.|+|+.++|-.
T Consensus 4 klrVAIIGtG~IGt~hm~~l~~~~~velvAVvdid~es~gla~A~~~Gi~~~~~~ie~LL~~~~~~dIDiVf~AT~a~-- 81 (302)
T PRK08300 4 KLKVAIIGSGNIGTDLMIKILRSEHLEPGAMVGIDPESDGLARARRLGVATSAEGIDGLLAMPEFDDIDIVFDATSAG-- 81 (302)
T ss_pred CCeEEEEcCcHHHHHHHHHHhcCCCcEEEEEEeCChhhHHHHHHHHcCCCcccCCHHHHHhCcCCCCCCEEEECCCHH--
Confidence 3589999999999997777764 4577765 565442 24567778764 37899985 589999999832
Q ss_pred ccccccHHHHhcCCCCcEEEEcC
Q 006864 297 TSKIFNDETFAKMKKGVRIVNVA 319 (628)
Q Consensus 297 t~~li~~~~l~~mk~gailIN~a 319 (628)
. | -+......+.|..+|+-.
T Consensus 82 ~-H--~e~a~~a~eaGk~VID~s 101 (302)
T PRK08300 82 A-H--VRHAAKLREAGIRAIDLT 101 (302)
T ss_pred H-H--HHHHHHHHHcCCeEEECC
Confidence 1 1 122223357788888865
|
|
| >COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=94.75 E-value=0.057 Score=60.20 Aligned_cols=122 Identities=24% Similarity=0.374 Sum_probs=77.0
Q ss_pred ecCCeEEEEecChhHHHHHHHHHcCCCEEEEECCCCChh-----HHHHcCCccc---CHHHHhccCCEEEEcCCCCcccc
Q 006864 227 LVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPAD-----KARAVGVELV---SFDQALATADFISLHMPLNPTTS 298 (628)
Q Consensus 227 l~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~-----~a~~~g~~~~---sl~ell~~aDvV~l~~Plt~~t~ 298 (628)
..||+|.|+|+|.-|.++|+.|+..|++|.++|...... .....+++.. ...+.+.++|+|+.. |.-+-+.
T Consensus 5 ~~~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~d~vV~S-PGi~~~~ 83 (448)
T COG0771 5 FQGKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAPEGLAAQPLLLEGIEVELGSHDDEDLAEFDLVVKS-PGIPPTH 83 (448)
T ss_pred ccCCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCccchhhhhhhccCceeecCccchhccccCCEEEEC-CCCCCCC
Confidence 348999999999999999999999999999999655321 1112344332 122678889999885 2222222
Q ss_pred cc-----------ccH-HHHhcC--CCCcEEEEcCCCchhcHHHHHHHHhCC--------CeeEEEeeccCCC
Q 006864 299 KI-----------FND-ETFAKM--KKGVRIVNVARGGVIDEEALVRALDSG--------VVAQAALDVFTEE 349 (628)
Q Consensus 299 ~l-----------i~~-~~l~~m--k~gailIN~aRg~~vde~aL~~aL~~g--------~i~ga~lDV~~~E 349 (628)
.+ +++ +.|-+. +.-.+-|.=.-|+.--..-+...|++. .|...++|+...+
T Consensus 84 p~v~~A~~~gi~i~~dieL~~r~~~~~p~vaITGTNGKTTTTsli~~~l~~~G~~~~lgGNIG~p~l~~~~~~ 156 (448)
T COG0771 84 PLVEAAKAAGIEIIGDIELFYRLSGEAPIVAITGTNGKTTTTSLIAHLLKAAGLDALLGGNIGTPALELLEQA 156 (448)
T ss_pred HHHHHHHHcCCcEEeHHHHHHHhcCCCCEEEEECCCchHHHHHHHHHHHHhcCCCceeccccCccHHHhhccc
Confidence 22 232 223332 122444555668877777777777653 3444678887764
|
|
| >PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional | Back alignment and domain information |
|---|
Probab=94.75 E-value=0.13 Score=57.15 Aligned_cols=96 Identities=18% Similarity=0.257 Sum_probs=64.5
Q ss_pred eeeecCCeEEEEec----------ChhHHHHHHHHHcCCCEEEEECCCCChhHH-HHcCCcccCHHHHhccCCEEEEcCC
Q 006864 224 GVSLVGKTLAVMGF----------GKVGSEVARRAKGLGMNVIAHDPYAPADKA-RAVGVELVSFDQALATADFISLHMP 292 (628)
Q Consensus 224 g~~l~GktiGIIGl----------G~IG~~vA~~l~~~G~~V~~~d~~~~~~~a-~~~g~~~~sl~ell~~aDvV~l~~P 292 (628)
+..+.|++|+|+|+ ..-+..+++.|+..|.+|.+|||+...+.. +..+....+ ...+..||.|++++.
T Consensus 309 ~~~~~~~~V~vlGlafK~~t~D~R~Spa~~ii~~L~~~g~~V~~~DP~v~~~~~~~~~~~~~~~-~~~~~~ad~vvi~t~ 387 (425)
T PRK15182 309 GINVEGSSVLILGFTFKENCPDIRNTRIIDVVKELGKYSCKVDIFDPWVDAEEVRREYGIIPVS-EVKSSHYDAIIVAVG 387 (425)
T ss_pred CCCCCCCEEEEEEeEeCCCCCccccCcHHHHHHHHHhCCCEEEEECCCCChhHHHHhcCcccch-hhhhcCCCEEEEccC
Confidence 45689999999999 556889999999999999999998643322 223322111 224678999999987
Q ss_pred CCccccccccHHHHh-cCCCCcEEEEcCCCch
Q 006864 293 LNPTTSKIFNDETFA-KMKKGVRIVNVARGGV 323 (628)
Q Consensus 293 lt~~t~~li~~~~l~-~mk~gailIN~aRg~~ 323 (628)
- ++-+. ++-+.+. .||...+|+|+ |+-+
T Consensus 388 h-~~f~~-~~~~~~~~~~~~~~~iiD~-r~~~ 416 (425)
T PRK15182 388 H-QQFKQ-MGSEDIRGFGKDKHVLYDL-KYVL 416 (425)
T ss_pred C-HHhhc-CCHHHHHHhcCCCCEEEEC-CCCC
Confidence 3 33332 4544444 45545688884 5444
|
|
| >cd00300 LDH_like L-lactate dehydrogenase-like enzymes | Back alignment and domain information |
|---|
Probab=94.64 E-value=0.11 Score=55.22 Aligned_cols=87 Identities=20% Similarity=0.197 Sum_probs=56.5
Q ss_pred EEEEecChhHHHHHHHHHcCC--CEEEEECCCCChhHHHHcCC----------cc--cCHHHHhccCCEEEEcCCCCccc
Q 006864 232 LAVMGFGKVGSEVARRAKGLG--MNVIAHDPYAPADKARAVGV----------EL--VSFDQALATADFISLHMPLNPTT 297 (628)
Q Consensus 232 iGIIGlG~IG~~vA~~l~~~G--~~V~~~d~~~~~~~a~~~g~----------~~--~sl~ell~~aDvV~l~~Plt~~t 297 (628)
|+|||.|.+|..+|..+...| .++..+|..........+.. .. .+-.+.++.||+|+++..... .
T Consensus 1 i~iiGaG~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~~~~~~i~~~~~~~~l~~aDiVIitag~p~-~ 79 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFLATGTIVRGGDYADAADADIVVITAGAPR-K 79 (300)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhccccCCCeEEECCCHHHhCCCCEEEEcCCCCC-C
Confidence 589999999999999998878 58999998754322211111 11 111468899999999987432 2
Q ss_pred cccc-------c-------HHHHhcCCCCcEEEEcC
Q 006864 298 SKIF-------N-------DETFAKMKKGVRIVNVA 319 (628)
Q Consensus 298 ~~li-------~-------~~~l~~mk~gailIN~a 319 (628)
.++- | ...+....|.+++++.+
T Consensus 80 ~~~~R~~l~~~n~~i~~~~~~~i~~~~p~~~viv~s 115 (300)
T cd00300 80 PGETRLDLINRNAPILRSVITNLKKYGPDAIILVVS 115 (300)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcc
Confidence 2210 1 12233445788999987
|
Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot |
| >PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional | Back alignment and domain information |
|---|
Probab=94.63 E-value=0.073 Score=59.62 Aligned_cols=110 Identities=17% Similarity=0.242 Sum_probs=72.3
Q ss_pred ecCCeEEEEecChhHHH-HHHHHHcCCCEEEEECCCCCh--hHHHHcCCccc--CHHHHhccCCEEEEcCCCCcccc---
Q 006864 227 LVGKTLAVMGFGKVGSE-VARRAKGLGMNVIAHDPYAPA--DKARAVGVELV--SFDQALATADFISLHMPLNPTTS--- 298 (628)
Q Consensus 227 l~GktiGIIGlG~IG~~-vA~~l~~~G~~V~~~d~~~~~--~~a~~~g~~~~--sl~ell~~aDvV~l~~Plt~~t~--- 298 (628)
..+|++.|+|+|..|.+ +|+.|+..|++|.++|..... ....+.|+... .-.+.+..+|+|++.--..+...
T Consensus 5 ~~~~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~~~~~~~~~~~d~vv~spgi~~~~~~~~ 84 (461)
T PRK00421 5 RRIKRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKESAVTQRLLELGAIIFIGHDAENIKDADVVVYSSAIPDDNPELV 84 (461)
T ss_pred CCCCEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCCChHHHHHHHCCCEEeCCCCHHHCCCCCEEEECCCCCCCCHHHH
Confidence 45789999999999999 799999999999999976532 22234466542 12345678999877532222211
Q ss_pred -------ccccHHHH-hc-CC-CCcEEEEcCCCchhcHHHHHHHHhCC
Q 006864 299 -------KIFNDETF-AK-MK-KGVRIVNVARGGVIDEEALVRALDSG 336 (628)
Q Consensus 299 -------~li~~~~l-~~-mk-~gailIN~aRg~~vde~aL~~aL~~g 336 (628)
.++++-+| .. ++ .-.+-|-=+.|+.--..-+...|+..
T Consensus 85 ~a~~~~i~i~~~~e~~~~~~~~~~~I~ITGTnGKTTTt~ll~~iL~~~ 132 (461)
T PRK00421 85 AARELGIPVVRRAEMLAELMRFRTSIAVAGTHGKTTTTSLLAHVLAEA 132 (461)
T ss_pred HHHHCCCcEEeHHHHHHHHHccCcEEEEECCCCHHHHHHHHHHHHHhc
Confidence 23444333 33 33 23555555789988888888888653
|
|
| >PRK06270 homoserine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.58 E-value=0.17 Score=54.75 Aligned_cols=108 Identities=22% Similarity=0.266 Sum_probs=64.4
Q ss_pred eEEEEecChhHHHHHHHHHcC----------CCEEEE-ECCC--------CChhHH----HHcCC--------cccCHHH
Q 006864 231 TLAVMGFGKVGSEVARRAKGL----------GMNVIA-HDPY--------APADKA----RAVGV--------ELVSFDQ 279 (628)
Q Consensus 231 tiGIIGlG~IG~~vA~~l~~~----------G~~V~~-~d~~--------~~~~~a----~~~g~--------~~~sl~e 279 (628)
+|||+|+|.||+.+++.++.. +++|.+ .|+. .+.+.+ ...+. ...++++
T Consensus 4 ~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~~~~vvai~d~~~~~~~~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~d~~e 83 (341)
T PRK06270 4 KIALIGFGGVGQGVAELLAEKREYLKKRYGLDLKVVAIADSSGSAIDPDGLDLELALKVKEETGKLADYPEGGGEISGLE 83 (341)
T ss_pred EEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCCcccCcCCCCHHHHHHHHhccCCcccCccccccCCHHH
Confidence 799999999999999998744 577665 4542 122211 11121 1137888
Q ss_pred Hhc--cCCEEEEcCCCCccccccccHHHHhcCCCCcEEEEcCCCchh-cHHHHHHHHhCCCe
Q 006864 280 ALA--TADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVI-DEEALVRALDSGVV 338 (628)
Q Consensus 280 ll~--~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~~v-de~aL~~aL~~g~i 338 (628)
++. +.|+|+.++|-...+...--.-....|+.|.-+|-..-+.+. ..+.|.++.++...
T Consensus 84 ll~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~GkhVVtaNK~pla~~~~eL~~~A~~~g~ 145 (341)
T PRK06270 84 VIRSVDADVVVEATPTNIETGEPALSHCRKALERGKHVVTSNKGPLALAYKELKELAKKNGV 145 (341)
T ss_pred HhhccCCCEEEECCcCcccccchHHHHHHHHHHCCCEEEcCCcHHHHhhHHHHHHHHHHcCC
Confidence 884 689999999955433222112234556777777665433332 45667777665433
|
|
| >cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains | Back alignment and domain information |
|---|
Probab=94.57 E-value=0.11 Score=41.97 Aligned_cols=59 Identities=14% Similarity=0.284 Sum_probs=43.1
Q ss_pred EEEEeccCCCCchhhHHhhhhcCCccccceEEeeeecCccEEEEEEe----CCCCCHHHHHHHhc
Q 006864 560 LILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGV----DEEPNQDSLKEIGK 620 (628)
Q Consensus 560 ~Llv~~~D~PGvIa~V~~iL~~~~INIa~m~v~R~~~gg~Al~~i~v----D~~~~~~~l~~L~~ 620 (628)
.+.+...|+||.++.|+..|.++++||..+++... ++.++..+.+ ..+.+.+-+++|++
T Consensus 2 ~l~v~~~d~~gll~~i~~~l~~~~~~I~~~~~~~~--~~~~~~~f~i~~~~~~~~~~~~~~~i~~ 64 (70)
T cd04899 2 VLELTALDRPGLLADVTRVLAELGLNIHSAKIATL--GERAEDVFYVTDADGQPLDPERQEALRA 64 (70)
T ss_pred EEEEEEcCCccHHHHHHHHHHHCCCeEEEEEEEec--CCEEEEEEEEECCCCCcCCHHHHHHHHH
Confidence 35567899999999999999999999999998643 2356555544 23345566666654
|
This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains. |
| >cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA | Back alignment and domain information |
|---|
Probab=94.55 E-value=0.042 Score=55.85 Aligned_cols=91 Identities=24% Similarity=0.252 Sum_probs=58.5
Q ss_pred eeecCCeEEEEecChhHHHHHHHHHcCCC-EEEEECCCC-Ch-hH-------HHHcC-----------------Cc----
Q 006864 225 VSLVGKTLAVMGFGKVGSEVARRAKGLGM-NVIAHDPYA-PA-DK-------ARAVG-----------------VE---- 273 (628)
Q Consensus 225 ~~l~GktiGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~-~~-~~-------a~~~g-----------------~~---- 273 (628)
..|.+++|.|+|+|.+|..+|+.|...|. ++..+|+.. .. .. ..+.| ++
T Consensus 17 ~~L~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~i~~~ 96 (228)
T cd00757 17 EKLKNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAINPDVEIEAY 96 (228)
T ss_pred HHHhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHhCCCCEEEEe
Confidence 46889999999999999999999999997 778887542 00 00 01111 11
Q ss_pred --cc---CHHHHhccCCEEEEcCCCCccccccccHHHHhcCCCCcEEEEcC
Q 006864 274 --LV---SFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVA 319 (628)
Q Consensus 274 --~~---sl~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~a 319 (628)
.. ++++++.++|+|+.|+. +.+++.++++...+ .+.-+|.++
T Consensus 97 ~~~i~~~~~~~~~~~~DvVi~~~d-~~~~r~~l~~~~~~---~~ip~i~~g 143 (228)
T cd00757 97 NERLDAENAEELIAGYDLVLDCTD-NFATRYLINDACVK---LGKPLVSGA 143 (228)
T ss_pred cceeCHHHHHHHHhCCCEEEEcCC-CHHHHHHHHHHHHH---cCCCEEEEE
Confidence 01 23466777888877766 55566666655443 244566654
|
Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1). |
| >cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme | Back alignment and domain information |
|---|
Probab=94.55 E-value=0.11 Score=43.82 Aligned_cols=61 Identities=15% Similarity=0.243 Sum_probs=40.8
Q ss_pred EEEEeccCCCCchhhHHhhhhcCCccccceEEeeeec-CccEEEEEEeCCCC-CH---HHHHHHhc
Q 006864 560 LILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFR-RNHGIMAIGVDEEP-NQ---DSLKEIGK 620 (628)
Q Consensus 560 ~Llv~~~D~PGvIa~V~~iL~~~~INIa~m~v~R~~~-gg~Al~~i~vD~~~-~~---~~l~~L~~ 620 (628)
.+.+..+|+||.++.+..++++++|||..+....... .+.-...++++... .+ ++++.|++
T Consensus 3 sl~~~~~d~~G~L~~il~~f~~~~ini~~i~s~p~~~~~~~~~f~vd~~~~~~~~~~~~~l~~l~~ 68 (80)
T cd04905 3 SIVFTLPNKPGALYDVLGVFAERGINLTKIESRPSKGGLWEYVFFIDFEGHIEDPNVAEALEELKR 68 (80)
T ss_pred EEEEEECCCCCHHHHHHHHHHHCCcCEEEEEEEEcCCCCceEEEEEEEECCCCCHHHHHHHHHHHH
Confidence 3556678999999999999999999999997543322 22334455566542 23 35555554
|
The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi |
| >COG0281 SfcA Malic enzyme [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=94.54 E-value=0.99 Score=49.71 Aligned_cols=183 Identities=20% Similarity=0.192 Sum_probs=115.1
Q ss_pred hcCceEEcCCCCChhhHHHHHHHHHHHHHHchhHHHHHHHcCcccccccceeeecCCeEEEEecChhHHHHHHHHHcCCC
Q 006864 174 EFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGM 253 (628)
Q Consensus 174 ~~GI~V~n~p~~~~~avAE~~l~l~L~~~R~i~~~~~~~~~g~W~~~~~~g~~l~GktiGIIGlG~IG~~vA~~l~~~G~ 253 (628)
+..|+|.|.-- .-+|=-+++-++..+| ..|..|+..+|.+.|.|.-|-.+++.+++.|+
T Consensus 165 ~~~IPvFhDDq---qGTaiv~lA~llnalk------------------~~gk~l~d~kiv~~GAGAAgiaia~~l~~~g~ 223 (432)
T COG0281 165 RMNIPVFHDDQ---QGTAIVTLAALLNALK------------------LTGKKLKDQKIVINGAGAAGIAIADLLVAAGV 223 (432)
T ss_pred cCCCCcccccc---cHHHHHHHHHHHHHHH------------------HhCCCccceEEEEeCCcHHHHHHHHHHHHhCC
Confidence 45688887743 2344456666776666 45788999999999999999999999999998
Q ss_pred ---EEEEECCCC--ChhHH----HHcCC--------cccCHHHHhccCCEEEEcCCCCccccccccHHHHhcCCCCcEEE
Q 006864 254 ---NVIAHDPYA--PADKA----RAVGV--------ELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIV 316 (628)
Q Consensus 254 ---~V~~~d~~~--~~~~a----~~~g~--------~~~sl~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailI 316 (628)
+|+.+|+.- ...+. .+..+ .... ++.+..+|+++-+- ..+.+.++.++.|.+..++.
T Consensus 224 ~~~~i~~~D~~G~l~~~r~~~~~~~~k~~~a~~~~~~~~~-~~~~~~adv~iG~S-----~~G~~t~e~V~~Ma~~PiIf 297 (432)
T COG0281 224 KEENIFVVDRKGLLYDGREDLTMNQKKYAKAIEDTGERTL-DLALAGADVLIGVS-----GVGAFTEEMVKEMAKHPIIF 297 (432)
T ss_pred CcccEEEEecCCcccCCCcccccchHHHHHHHhhhccccc-cccccCCCEEEEcC-----CCCCcCHHHHHHhccCCEEe
Confidence 588888652 11110 00000 1111 55788999986543 23899999999999999999
Q ss_pred EcCCCchhcHHHHHHHHhCC-CeeEEEeeccCCCCCCCCCccccCCcEEEcCCCCCCcHHH-----HHHHHHHHHHHHHH
Q 006864 317 NVARGGVIDEEALVRALDSG-VVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKEA-----QEGVAIEIAEAVVG 390 (628)
Q Consensus 317 N~aRg~~vde~aL~~aL~~g-~i~ga~lDV~~~EP~~~~~~L~~~~nvilTPHig~~T~ea-----~~~~~~~~~~~i~~ 390 (628)
=.+....--.-..+..-.+| .|.+.|-- +.|- +..|+++-|.++-.--.+ -+.|-..+++.|.+
T Consensus 298 alaNP~pEi~Pe~a~~~~~~aaivaTGrs---------d~Pn-QvNNvL~FPgIfrGaLd~rA~~ItdeM~~AAa~AiA~ 367 (432)
T COG0281 298 ALANPTPEITPEDAKEWGDGAAIVATGRS---------DYPN-QVNNVLIFPGIFRGALDVRAKTITDEMKIAAAEAIAD 367 (432)
T ss_pred ecCCCCccCCHHHHhhcCCCCEEEEeCCC---------CCcc-cccceeEcchhhhhhHhhccccCCHHHHHHHHHHHHh
Confidence 88876532222222222222 45444322 1122 678999999987432211 13344555666666
Q ss_pred HHc
Q 006864 391 ALR 393 (628)
Q Consensus 391 ~l~ 393 (628)
+..
T Consensus 368 ~~~ 370 (432)
T COG0281 368 LAR 370 (432)
T ss_pred hcc
Confidence 554
|
|
| >PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional | Back alignment and domain information |
|---|
Probab=94.47 E-value=0.045 Score=54.30 Aligned_cols=48 Identities=13% Similarity=0.239 Sum_probs=37.1
Q ss_pred cEEEEeccCCCCchhhHHhhhhcCCccccceEEeeeec--CccEEEEEEe
Q 006864 559 NLILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFR--RNHGIMAIGV 606 (628)
Q Consensus 559 ~~Llv~~~D~PGvIa~V~~iL~~~~INIa~m~v~R~~~--gg~Al~~i~v 606 (628)
+.+-+.-.|+||++..|+..|++++|||.+++...... .+..++.+.+
T Consensus 96 ~~v~v~G~DrPGIV~~vT~~la~~~iNI~~L~T~~~~a~~~~~~lf~~~~ 145 (190)
T PRK11589 96 VWVQVEVADSPHLIERFTALFDSHHMNIAELVSRTQPAEGERPAQLHIQI 145 (190)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHcCCChhheEEeeecCCCCCcccEEEEE
Confidence 44556679999999999999999999999999976542 4554444443
|
|
| >PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A | Back alignment and domain information |
|---|
Probab=94.46 E-value=0.046 Score=51.34 Aligned_cols=80 Identities=31% Similarity=0.452 Sum_probs=49.8
Q ss_pred EEEEecChhHHHHHHHHHcCCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEcCCCCccccccccHHHHhcCCC
Q 006864 232 LAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKK 311 (628)
Q Consensus 232 iGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~sl~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~ 311 (628)
+-|+|-|.+|+++++.++.+|++|.++|++.. .+..++-+ .+.+.. + + .+.+ .+.+
T Consensus 1 L~I~GaG~va~al~~la~~lg~~v~v~d~r~e----------------~~~~~~~~-~~~~~~-~---~--~~~~-~~~~ 56 (136)
T PF13478_consen 1 LVIFGAGHVARALARLAALLGFRVTVVDPRPE----------------RFPEADEV-ICIPPD-D---I--LEDL-EIDP 56 (136)
T ss_dssp EEEES-STCHHHHHHHHHHCTEEEEEEES-CC----------------C-TTSSEE-ECSHHH-H---H--HHHC--S-T
T ss_pred CEEEeCcHHHHHHHHHHHhCCCEEEEEcCCcc----------------ccCCCCcc-EecChH-H---H--Hhcc-CCCC
Confidence 46899999999999999999999999998732 01233432 222211 0 0 0112 3566
Q ss_pred CcEEEEcCCCchhcHHHHHHHHhCC
Q 006864 312 GVRIVNVARGGVIDEEALVRALDSG 336 (628)
Q Consensus 312 gailIN~aRg~~vde~aL~~aL~~g 336 (628)
+..+| +.++.-.|.++|.++|+.+
T Consensus 57 ~t~Vv-~th~h~~D~~~L~~~l~~~ 80 (136)
T PF13478_consen 57 NTAVV-MTHDHELDAEALEAALASP 80 (136)
T ss_dssp T-EEE---S-CCCHHHHHHHHTTSS
T ss_pred CeEEE-EcCCchhHHHHHHHHHcCC
Confidence 66766 8899999999999999884
|
|
| >PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A | Back alignment and domain information |
|---|
Probab=94.43 E-value=0.13 Score=46.80 Aligned_cols=99 Identities=22% Similarity=0.341 Sum_probs=63.0
Q ss_pred CeEEEEe----cChhHHHHHHHHHcCCCEEEEECCCCChhHHHHcCCc-ccCHHHHhccCCEEEEcCCCCccccccccHH
Q 006864 230 KTLAVMG----FGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVE-LVSFDQALATADFISLHMPLNPTTSKIFNDE 304 (628)
Q Consensus 230 ktiGIIG----lG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~-~~sl~ell~~aDvV~l~~Plt~~t~~li~~~ 304 (628)
|+++||| -|..|..+.+.|++.|++|+..+|.... -.|.. +.+++|.-...|++++++|-. .+..++ +
T Consensus 1 ksiAVvGaS~~~~~~g~~v~~~l~~~G~~v~~Vnp~~~~----i~G~~~y~sl~e~p~~iDlavv~~~~~-~~~~~v--~ 73 (116)
T PF13380_consen 1 KSIAVVGASDNPGKFGYRVLRNLKAAGYEVYPVNPKGGE----ILGIKCYPSLAEIPEPIDLAVVCVPPD-KVPEIV--D 73 (116)
T ss_dssp -EEEEET--SSTTSHHHHHHHHHHHTT-EEEEESTTCSE----ETTEE-BSSGGGCSST-SEEEE-S-HH-HHHHHH--H
T ss_pred CEEEEEcccCCCCChHHHHHHHHHhCCCEEEEECCCceE----ECcEEeeccccCCCCCCCEEEEEcCHH-HHHHHH--H
Confidence 6899999 7899999999999999999999987522 12443 347888447899999999922 233333 2
Q ss_pred HHhcCCCCcEEEEcCCCchhcHHHHHHHHhCCCee
Q 006864 305 TFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVA 339 (628)
Q Consensus 305 ~l~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~ 339 (628)
.+..+....+++..+ ..++.+.+.+++..+.
T Consensus 74 ~~~~~g~~~v~~~~g----~~~~~~~~~a~~~gi~ 104 (116)
T PF13380_consen 74 EAAALGVKAVWLQPG----AESEELIEAAREAGIR 104 (116)
T ss_dssp HHHHHT-SEEEE-TT----S--HHHHHHHHHTT-E
T ss_pred HHHHcCCCEEEEEcc----hHHHHHHHHHHHcCCE
Confidence 233356778888877 5666677777766553
|
|
| >TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating) | Back alignment and domain information |
|---|
Probab=94.41 E-value=0.18 Score=53.25 Aligned_cols=84 Identities=17% Similarity=0.251 Sum_probs=56.0
Q ss_pred CeEEEEecChhHHHHHHHHHc-CCCEEEE-ECCCCC---hhHHHHcCCcc--cCHHHHhc--cCCEEEEcCCCCcccccc
Q 006864 230 KTLAVMGFGKVGSEVARRAKG-LGMNVIA-HDPYAP---ADKARAVGVEL--VSFDQALA--TADFISLHMPLNPTTSKI 300 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~-~G~~V~~-~d~~~~---~~~a~~~g~~~--~sl~ell~--~aDvV~l~~Plt~~t~~l 300 (628)
.++||||.|+||+..+..+.. -++++.+ +|+... ...+++.|+.. .+.+++++ +.|+|++++|-. +.
T Consensus 2 lrVAIIG~G~IG~~h~~~ll~~~~~elvaV~d~d~es~~la~A~~~Gi~~~~~~~e~ll~~~dIDaV~iaTp~~--~H-- 77 (285)
T TIGR03215 2 VKVAIIGSGNIGTDLMYKLLRSEHLEMVAMVGIDPESDGLARARELGVKTSAEGVDGLLANPDIDIVFDATSAK--AH-- 77 (285)
T ss_pred cEEEEEeCcHHHHHHHHHHHhCCCcEEEEEEeCCcccHHHHHHHHCCCCEEECCHHHHhcCCCCCEEEECCCcH--HH--
Confidence 379999999999988776664 4577765 565542 24566778753 37888886 578899999833 22
Q ss_pred ccHHHHhcCCCCcEEEEc
Q 006864 301 FNDETFAKMKKGVRIVNV 318 (628)
Q Consensus 301 i~~~~l~~mk~gailIN~ 318 (628)
-+.....++.|..+++-
T Consensus 78 -~e~a~~al~aGk~VIde 94 (285)
T TIGR03215 78 -ARHARLLAELGKIVIDL 94 (285)
T ss_pred -HHHHHHHHHcCCEEEEC
Confidence 12223335667777654
|
Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc. |
| >PRK06027 purU formyltetrahydrofolate deformylase; Reviewed | Back alignment and domain information |
|---|
Probab=94.41 E-value=0.05 Score=57.41 Aligned_cols=50 Identities=20% Similarity=0.201 Sum_probs=41.1
Q ss_pred cEEEEeccCCCCchhhHHhhhhcCCccccceEEeeeecCccEEEEEEeCC
Q 006864 559 NLILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDE 608 (628)
Q Consensus 559 ~~Llv~~~D~PGvIa~V~~iL~~~~INIa~m~v~R~~~gg~Al~~i~vD~ 608 (628)
..+-+.-+|+||+++.|++.|+++|+||.+++..+..-+|.-.|.+.++-
T Consensus 7 ~vitv~G~DrpGIVa~Vt~~La~~g~NI~d~s~~~~~~~g~F~m~i~v~~ 56 (286)
T PRK06027 7 YVLTLSCPDRPGIVAAVSNFLYEHGGNIVDADQFVDPETGRFFMRVEFEG 56 (286)
T ss_pred EEEEEECCCCCcHHHHHHHHHHHCCCCEEEceeEEcCCCCeEEEEEEEEe
Confidence 45566779999999999999999999999999988555566666666665
|
|
| >PRK07200 aspartate/ornithine carbamoyltransferase family protein; Validated | Back alignment and domain information |
|---|
Probab=94.38 E-value=0.73 Score=50.84 Aligned_cols=65 Identities=26% Similarity=0.336 Sum_probs=48.9
Q ss_pred eecCCeEEEEec-----C---hhHHHHHHHHHcCCCEEEEECCCC---Chh---H----HHHcCC--cc-cCHHHHhccC
Q 006864 226 SLVGKTLAVMGF-----G---KVGSEVARRAKGLGMNVIAHDPYA---PAD---K----ARAVGV--EL-VSFDQALATA 284 (628)
Q Consensus 226 ~l~GktiGIIGl-----G---~IG~~vA~~l~~~G~~V~~~d~~~---~~~---~----a~~~g~--~~-~sl~ell~~a 284 (628)
.+.|+||+|+|- | ++..+++..+..+||+|.+..|.. .++ . +++.|. .. .++++.++.|
T Consensus 184 ~l~g~kVaivg~~~~~~g~~~~Va~Sl~~~~~~lG~~v~~~~P~~~~~~~~i~~~a~~~~~~~G~~i~~~~d~~eav~~a 263 (395)
T PRK07200 184 NLKGKKIAMTWAYSPSYGKPLSVPQGIIGLMTRFGMDVTLAHPEGYDLMPEVVEVAKKNAKASGGSFRQVNSMEEAFKDA 263 (395)
T ss_pred ccCCCEEEEEeccccccCCcchHHHHHHHHHHHcCCEEEEECCCccCCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCC
Confidence 478999999985 5 566899999999999999988753 122 1 233453 22 3899999999
Q ss_pred CEEEEc
Q 006864 285 DFISLH 290 (628)
Q Consensus 285 DvV~l~ 290 (628)
|+|..-
T Consensus 264 DvVYtd 269 (395)
T PRK07200 264 DIVYPK 269 (395)
T ss_pred CEEEEc
Confidence 999885
|
|
| >PRK11579 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=94.33 E-value=0.098 Score=56.32 Aligned_cols=63 Identities=17% Similarity=0.254 Sum_probs=43.7
Q ss_pred CeEEEEecChhHHH-HHHHHHcC-CCEEEE-ECCCCChhHHHHc-CCc-ccCHHHHhc--cCCEEEEcCCC
Q 006864 230 KTLAVMGFGKVGSE-VARRAKGL-GMNVIA-HDPYAPADKARAV-GVE-LVSFDQALA--TADFISLHMPL 293 (628)
Q Consensus 230 ktiGIIGlG~IG~~-vA~~l~~~-G~~V~~-~d~~~~~~~a~~~-g~~-~~sl~ell~--~aDvV~l~~Pl 293 (628)
-++||||+|.||+. .+..++.. ++++.+ +|+.... ..... +.. +.+++++++ +.|+|++++|.
T Consensus 5 irvgiiG~G~i~~~~~~~~~~~~~~~~l~av~d~~~~~-~~~~~~~~~~~~~~~ell~~~~vD~V~I~tp~ 74 (346)
T PRK11579 5 IRVGLIGYGYASKTFHAPLIAGTPGLELAAVSSSDATK-VKADWPTVTVVSEPQHLFNDPNIDLIVIPTPN 74 (346)
T ss_pred ceEEEECCCHHHHHHHHHHHhhCCCCEEEEEECCCHHH-HHhhCCCCceeCCHHHHhcCCCCCEEEEcCCc
Confidence 38999999999985 56666544 688875 6765322 12223 232 348999996 57999999993
|
|
| >PRK09880 L-idonate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.31 E-value=0.16 Score=54.25 Aligned_cols=46 Identities=28% Similarity=0.488 Sum_probs=37.1
Q ss_pred cCCeEEEEecChhHHHHHHHHHcCCC-EEEEECCCC-ChhHHHHcCCc
Q 006864 228 VGKTLAVMGFGKVGSEVARRAKGLGM-NVIAHDPYA-PADKARAVGVE 273 (628)
Q Consensus 228 ~GktiGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~-~~~~a~~~g~~ 273 (628)
.|+++.|+|.|.+|...++.++.+|. +|++.|... ..+.++++|+.
T Consensus 169 ~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~lGa~ 216 (343)
T PRK09880 169 QGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREMGAD 216 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHcCCc
Confidence 58999999999999999999999998 688888664 33455666653
|
|
| >PRK12862 malic enzyme; Reviewed | Back alignment and domain information |
|---|
Probab=94.29 E-value=1.5 Score=52.41 Aligned_cols=172 Identities=18% Similarity=0.120 Sum_probs=115.3
Q ss_pred CceEEcCCCCChhhHHHHHHHHHHHHHHchhHHHHHHHcCcccccccceeeecCCeEEEEecChhHHHHHHHHHcCCC--
Q 006864 176 GCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGM-- 253 (628)
Q Consensus 176 GI~V~n~p~~~~~avAE~~l~l~L~~~R~i~~~~~~~~~g~W~~~~~~g~~l~GktiGIIGlG~IG~~vA~~l~~~G~-- 253 (628)
+|+|.|.-- .-+|=-+++-+++.+| ..|..+...+|.|.|.|.-|-.+|+.+...|.
T Consensus 161 ~ip~f~DD~---~GTa~v~la~l~~a~~------------------~~~~~~~~~~iv~~GaGaag~~~a~~l~~~G~~~ 219 (763)
T PRK12862 161 KIPVFHDDQ---HGTAIIVAAALLNGLK------------------LVGKDIEDVKLVASGAGAAALACLDLLVSLGVKR 219 (763)
T ss_pred CCceEecCc---ccHHHHHHHHHHHHHH------------------HhCCChhhcEEEEEChhHHHHHHHHHHHHcCCCc
Confidence 699999843 2344456666776666 24677888999999999999999999999998
Q ss_pred -EEEEECCCC----------Ch---hHHHHcCCcccCHHHHhccCCEEEEcCCCCccccccccHHHHhcCCCCcEEEEcC
Q 006864 254 -NVIAHDPYA----------PA---DKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVA 319 (628)
Q Consensus 254 -~V~~~d~~~----------~~---~~a~~~g~~~~sl~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~a 319 (628)
+++.+|+.- .. ..++.. ...+|.|+++.+|+++=.- +-+.+.++.++.|.+..+|.=.+
T Consensus 220 ~~i~~~D~~G~i~~~r~~~l~~~~~~~a~~~--~~~~l~e~~~~~~v~iG~s-----~~g~~~~~~v~~M~~~piifals 292 (763)
T PRK12862 220 ENIWVTDIKGVVYEGRTELMDPWKARYAQKT--DARTLAEVIEGADVFLGLS-----AAGVLKPEMVKKMAPRPLIFALA 292 (763)
T ss_pred ccEEEEcCCCeeeCCCCccccHHHHHHhhhc--ccCCHHHHHcCCCEEEEcC-----CCCCCCHHHHHHhccCCEEEeCC
Confidence 788888531 11 112211 2348999999999986532 25899999999999999999999
Q ss_pred CCchh-cHHHHHHHHhCCCeeEEEeeccCCCCCCCCCccccCCcEEEcCCCCC---------CcHHHHHHHHHHHHH
Q 006864 320 RGGVI-DEEALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGA---------STKEAQEGVAIEIAE 386 (628)
Q Consensus 320 Rg~~v-de~aL~~aL~~g~i~ga~lDV~~~EP~~~~~~L~~~~nvilTPHig~---------~T~ea~~~~~~~~~~ 386 (628)
....- ..+..+++ ..|.|.+.|-. ..| =+..|+++-|-++- -|.+.+...+..+++
T Consensus 293 NP~~E~~p~~a~~~-~~~~i~atGrs---~~p-------~Q~NN~~~FPgi~~g~l~~~a~~i~~~m~~aaa~ala~ 358 (763)
T PRK12862 293 NPTPEILPEEARAV-RPDAIIATGRS---DYP-------NQVNNVLCFPYIFRGALDVGATTINEEMKIAAVRAIAE 358 (763)
T ss_pred CCcccCCHHHHHHh-cCCEEEEECCc---CCC-------CcccceeeccchhhhHHhcCCeeCCHHHHHHHHHHHHh
Confidence 87643 22332333 22456555411 111 24468888887763 355555555554444
|
|
| >PRK05708 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=94.26 E-value=0.15 Score=54.07 Aligned_cols=110 Identities=15% Similarity=0.134 Sum_probs=70.9
Q ss_pred CeEEEEecChhHHHHHHHHHcCCCEEEEECCCC-ChhHHHH-cCCcc------------cCHHHHhccCCEEEEcCCCCc
Q 006864 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA-PADKARA-VGVEL------------VSFDQALATADFISLHMPLNP 295 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~-~g~~~------------~sl~ell~~aDvV~l~~Plt~ 295 (628)
++|+|+|.|.||.-+|-+|...|.+|..+++.. ..+...+ .|+.. ..-.+....+|+|++++--.
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~~~~~~i~~~~Gl~i~~~g~~~~~~~~~~~~~~~~~~D~viv~vK~~- 81 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGLPVRLILRDRQRLAAYQQAGGLTLVEQGQASLYAIPAETADAAEPIHRLLLACKAY- 81 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCCCeEEEEechHHHHHHhhcCCeEEeeCCcceeeccCCCCcccccccCEEEEECCHH-
Confidence 579999999999999999999999999998864 2222222 13211 01122346789999988532
Q ss_pred cccccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhCCCeeEEE
Q 006864 296 TTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAA 342 (628)
Q Consensus 296 ~t~~li~~~~l~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~ga~ 342 (628)
++...+ +.....+.+++.++-+-- ++-.++.+.+.+...++.++.
T Consensus 82 ~~~~al-~~l~~~l~~~t~vv~lQN-Gv~~~e~l~~~~~~~~v~~g~ 126 (305)
T PRK05708 82 DAEPAV-ASLAHRLAPGAELLLLQN-GLGSQDAVAARVPHARCIFAS 126 (305)
T ss_pred hHHHHH-HHHHhhCCCCCEEEEEeC-CCCCHHHHHHhCCCCcEEEEE
Confidence 222222 233445677887777654 445667777888766665543
|
|
| >KOG2653 consensus 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.26 E-value=0.66 Score=49.89 Aligned_cols=157 Identities=19% Similarity=0.236 Sum_probs=108.9
Q ss_pred CeEEEEecChhHHHHHHHHHcCCCEEEEECCCCCh-h--HH-HHcCCc---ccCHHHHh---ccCCEEEEcCCCCccccc
Q 006864 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPA-D--KA-RAVGVE---LVSFDQAL---ATADFISLHMPLNPTTSK 299 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~--~a-~~~g~~---~~sl~ell---~~aDvV~l~~Plt~~t~~ 299 (628)
..||+||++.||+.++......|+.|.+|++..+. + .+ +..|.. ..|+++++ +.-..|++.+---.-. .
T Consensus 7 ~digLiGLaVMGqnLiLN~~d~Gf~v~~yNRT~skvD~flaneak~~~i~ga~S~ed~v~klk~PR~iillvkAG~pV-D 85 (487)
T KOG2653|consen 7 ADIGLIGLAVMGQNLILNIADKGFTVCAYNRTTSKVDEFLANEAKGTKIIGAYSLEDFVSKLKKPRVIILLVKAGAPV-D 85 (487)
T ss_pred cchhhhhHhhhhhhhhhcccccCceEEEeccchHhHHHHHHHhhcCCcccCCCCHHHHHHhcCCCcEEEEEeeCCCcH-H
Confidence 46899999999999999999999999999987632 1 11 222322 34788774 5567777766433322 3
Q ss_pred cccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhCCCeeEEEeeccCCCCCCCCCccccCCcEEEcCCCCCCcHHHHHH
Q 006864 300 IFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKEAQEG 379 (628)
Q Consensus 300 li~~~~l~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~ga~lDV~~~EP~~~~~~L~~~~nvilTPHig~~T~ea~~~ 379 (628)
.+-++....|.+|-+|||-+...--|.+.=.+.|....|...+.-|.+.|--+...|- + +-+.+.+++.+
T Consensus 86 ~~I~~L~p~LekgDiIIDGGNs~y~dT~RR~~el~k~GilfvG~GVSGGEEGAR~GPS-----l-----MpGg~~~Awp~ 155 (487)
T KOG2653|consen 86 QFIEELVPYLEKGDIIIDGGNSEYQDTERRCRELAKKGILFVGSGVSGGEEGARYGPS-----L-----MPGGSKEAWPH 155 (487)
T ss_pred HHHHHHHhhcCCCCEEEeCCcccCcchHHHHHHHHhcCcEEEecCccCcccccccCCc-----c-----CCCCChHHHHH
Confidence 3346777889999999999988888999989989888877899999998854322221 1 22456777777
Q ss_pred HHHHHHHHHHHHH-cCCCCC
Q 006864 380 VAIEIAEAVVGAL-RGELSA 398 (628)
Q Consensus 380 ~~~~~~~~i~~~l-~g~~~~ 398 (628)
+ +.+.+.|..-. .|++..
T Consensus 156 i-k~ifq~iaakv~~~epCc 174 (487)
T KOG2653|consen 156 I-KDIFQKIAAKVSDGEPCC 174 (487)
T ss_pred H-HHHHHHHHHHhcCCCCCe
Confidence 5 45556664443 344443
|
|
| >cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases | Back alignment and domain information |
|---|
Probab=94.25 E-value=0.13 Score=57.35 Aligned_cols=160 Identities=15% Similarity=0.030 Sum_probs=86.1
Q ss_pred CeEEEEecChhHHHHHH---HH---HcCCCEEEEECCCCChhH-H--------HHcCC----c-ccCHHHHhccCCEEEE
Q 006864 230 KTLAVMGFGKVGSEVAR---RA---KGLGMNVIAHDPYAPADK-A--------RAVGV----E-LVSFDQALATADFISL 289 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~---~l---~~~G~~V~~~d~~~~~~~-a--------~~~g~----~-~~sl~ell~~aDvV~l 289 (628)
.+|+|||.|.+|...+. .+ ...|.+|..||+...... . ...+. . ..++++.++.||+|+.
T Consensus 1 ~KIaIIGaGs~G~a~a~~~~i~~~~~~~g~eV~L~Did~e~l~~~~~~~~~~~~~~~~~~~I~~ttD~~eal~~AD~Vi~ 80 (423)
T cd05297 1 IKIAFIGAGSVVFTKNLVGDLLKTPELSGSTIALMDIDEERLETVEILAKKIVEELGAPLKIEATTDRREALDGADFVIN 80 (423)
T ss_pred CeEEEECCChHHhHHHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHHhcCCCEEEE
Confidence 37999999999998665 22 333679999998742211 0 11111 1 2378899999999999
Q ss_pred cCCCCcc-----------ccccc---------------------cHHHHhcC---CCCcEEEEcCCCchhcHHHHHHHHh
Q 006864 290 HMPLNPT-----------TSKIF---------------------NDETFAKM---KKGVRIVNVARGGVIDEEALVRALD 334 (628)
Q Consensus 290 ~~Plt~~-----------t~~li---------------------~~~~l~~m---k~gailIN~aRg~~vde~aL~~aL~ 334 (628)
++|.... -++++ -.+..+.+ .|.++++|.+-.--+-..++.+...
T Consensus 81 ai~~~~~~~~~~de~i~~K~g~~~~~~~t~g~ggi~~~~~s~~~i~~ia~~i~~~~p~a~~i~~tNPv~i~t~~~~k~~~ 160 (423)
T cd05297 81 TIQVGGHEYTETDFEIPEKYGYYQTVGDTSGPGGIFRALRTIPVLLDIARDIEELCPDAWLLNYANPMAELTWALNRYTP 160 (423)
T ss_pred eeEecCccchhhhhhhHHHcCeeeeccCCCcHHHHHHHHhhHHHHHHHHHHHHHHCCCCEEEEcCChHHHHHHHHHHhCC
Confidence 9994110 00000 01222223 2688888887766666666666654
Q ss_pred CCCeeEEEeeccCCCCCCCCCcccc------CCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcC
Q 006864 335 SGVVAQAALDVFTEEPPAKDSKLVQ------HENVTVTPHLGASTKEAQEGVAIEIAEAVVGALRG 394 (628)
Q Consensus 335 ~g~i~ga~lDV~~~EP~~~~~~L~~------~~nvilTPHig~~T~ea~~~~~~~~~~~i~~~l~g 394 (628)
.++.|.+--+.... -.-...+. ...++=-=|++|.+.-.. + ..++...+.+++..
T Consensus 161 -~rviG~c~~~~~~~--~~~a~~l~~~~~~v~~~~~GlNH~~w~~~~~~-~-G~d~~p~l~~~~~~ 221 (423)
T cd05297 161 -IKTVGLCHGVQGTA--EQLAKLLGEPPEEVDYQVAGINHMAWLLKFEY-N-GEDLYPLLDEWIEE 221 (423)
T ss_pred -CCEEEECCcHHHHH--HHHHHHhCCCHHHeEEEEEeeccHhhhhhheE-C-CcchHHHHHHHHhc
Confidence 44544331111000 00001111 134556667777764222 1 44555566666543
|
linked to 3D####ucture |
| >PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated | Back alignment and domain information |
|---|
Probab=94.24 E-value=0.11 Score=56.10 Aligned_cols=87 Identities=20% Similarity=0.319 Sum_probs=53.5
Q ss_pred CeEEEEec-ChhHHHHHHHHHcC-CCEEEE-ECCCCChh-HHHHcC-C------cccCHHH-HhccCCEEEEcCCCCccc
Q 006864 230 KTLAVMGF-GKVGSEVARRAKGL-GMNVIA-HDPYAPAD-KARAVG-V------ELVSFDQ-ALATADFISLHMPLNPTT 297 (628)
Q Consensus 230 ktiGIIGl-G~IG~~vA~~l~~~-G~~V~~-~d~~~~~~-~a~~~g-~------~~~sl~e-ll~~aDvV~l~~Plt~~t 297 (628)
++|+|+|. |.+|+.+++.|... ++++.+ .++....+ .....+ + .+.++++ .+.++|+|++|+|-.. .
T Consensus 3 ~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~vD~Vf~alP~~~-~ 81 (343)
T PRK00436 3 IKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSRSSAGKPLSDVHPHLRGLVDLVLEPLDPEILAGADVVFLALPHGV-S 81 (343)
T ss_pred eEEEEECCCCHHHHHHHHHHHcCCCceEEEEECccccCcchHHhCcccccccCceeecCCHHHhcCCCEEEECCCcHH-H
Confidence 58999996 99999999999877 677755 55332111 111111 1 1223332 4578999999999432 1
Q ss_pred cccccHHHHhcCCCCcEEEEcCCC
Q 006864 298 SKIFNDETFAKMKKGVRIVNVARG 321 (628)
Q Consensus 298 ~~li~~~~l~~mk~gailIN~aRg 321 (628)
. +-....++.|..+||.+-.
T Consensus 82 ~----~~v~~a~~aG~~VID~S~~ 101 (343)
T PRK00436 82 M----DLAPQLLEAGVKVIDLSAD 101 (343)
T ss_pred H----HHHHHHHhCCCEEEECCcc
Confidence 1 1122224679999998743
|
|
| >PRK13011 formyltetrahydrofolate deformylase; Reviewed | Back alignment and domain information |
|---|
Probab=94.19 E-value=0.11 Score=54.79 Aligned_cols=50 Identities=12% Similarity=0.120 Sum_probs=39.0
Q ss_pred cEEEEeccCCCCchhhHHhhhhcCCccccceEEeeeecCccEEEEEEeCC
Q 006864 559 NLILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDE 608 (628)
Q Consensus 559 ~~Llv~~~D~PGvIa~V~~iL~~~~INIa~m~v~R~~~gg~Al~~i~vD~ 608 (628)
..+.+.-+|+||+|+.|++.|+++++||.+++..-...++.=.|.++++-
T Consensus 8 ~vitv~G~DrpGIVa~VT~~La~~~vNI~dls~~~~~~~~~F~m~~~~~~ 57 (286)
T PRK13011 8 FVLTLSCPSAAGIVAAVTGFLAEHGCYITELHSFDDRLSGRFFMRVEFHS 57 (286)
T ss_pred EEEEEEeCCCCCHHHHHHHHHHhCCCCEEEeeeeecCCCCeEEEEEEEec
Confidence 45566779999999999999999999999999863334445556667653
|
|
| >PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=94.15 E-value=0.11 Score=58.49 Aligned_cols=112 Identities=16% Similarity=0.151 Sum_probs=72.8
Q ss_pred eeeecCCeEEEEecChhHHHHHHHHHcCCCEEEEECCCCCh------hHHHHcCCccc--CHHHHhccCCEEEEcCCCCc
Q 006864 224 GVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPA------DKARAVGVELV--SFDQALATADFISLHMPLNP 295 (628)
Q Consensus 224 g~~l~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~------~~a~~~g~~~~--sl~ell~~aDvV~l~~Plt~ 295 (628)
+..+.|+++.|||.|.+|.++|+.|+..|++|.++|..... ...++.|++.. .-.+....+|+|+++.-..+
T Consensus 11 ~~~~~~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~D~Vv~s~Gi~~ 90 (480)
T PRK01438 11 HSDWQGLRVVVAGLGVSGFAAADALLELGARVTVVDDGDDERHRALAAILEALGATVRLGPGPTLPEDTDLVVTSPGWRP 90 (480)
T ss_pred ccCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhhHHHHHHHHHcCCEEEECCCccccCCCCEEEECCCcCC
Confidence 45678999999999999999999999999999999865311 12344566543 11124557999998764433
Q ss_pred ccc----------ccccHHHH--hcCCC----CcEEEEcCCCchhcHHHHHHHHhC
Q 006864 296 TTS----------KIFNDETF--AKMKK----GVRIVNVARGGVIDEEALVRALDS 335 (628)
Q Consensus 296 ~t~----------~li~~~~l--~~mk~----gailIN~aRg~~vde~aL~~aL~~ 335 (628)
.+. .++++-+| ..+.+ ..+-|-=+.|+.--..-+...|+.
T Consensus 91 ~~~~~~~a~~~gi~v~~~~e~~~~~~~~~~~~~~I~VTGTnGKTTTt~mi~~iL~~ 146 (480)
T PRK01438 91 DAPLLAAAADAGIPVWGEVELAWRLRDPDRPAPWLAVTGTNGKTTTVQMLASMLRA 146 (480)
T ss_pred CCHHHHHHHHCCCeecchHHHHHHhhhccCCCCEEEEeCCCcHHHHHHHHHHHHHH
Confidence 322 12333222 23322 235555567888888877777765
|
|
| >COG1707 ACT domain-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.09 E-value=0.079 Score=50.85 Aligned_cols=66 Identities=11% Similarity=0.237 Sum_probs=56.9
Q ss_pred EEeccCCCCchhhHHhhhhcCCccccceEEeeeecCccEEEEEEeCCC-CCHHHHHHHhcccCcccc
Q 006864 562 LCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDEE-PNQDSLKEIGKVHFVARI 627 (628)
Q Consensus 562 lv~~~D~PGvIa~V~~iL~~~~INIa~m~v~R~~~gg~Al~~i~vD~~-~~~~~l~~L~~l~~v~~v 627 (628)
-+...++||++..++.+++++|.||.+.|.+-.+.|..++..+++..- ..+.++++++..+.|.++
T Consensus 6 si~~enk~GvL~~ltgiiae~ggNIt~~q~~~~~~g~~~~iYmEiEgi~d~e~l~~~lks~d~v~ev 72 (218)
T COG1707 6 SIIAENKPGVLRDLTGIIAEEGGNITYAQQFLEKDGEKALIYMEIEGIDDFEKLLERLKSFDYVIEV 72 (218)
T ss_pred EEEeecCccHHHHHHHHHHhcCCceEeeehhhhccCceEEEEEEeeCCCCHHHHHHHhhccceEEEe
Confidence 345678999999999999999999999999988888899999998764 456899999998887664
|
|
| >PRK08192 aspartate carbamoyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=94.07 E-value=0.7 Score=49.99 Aligned_cols=66 Identities=18% Similarity=0.250 Sum_probs=47.9
Q ss_pred eeecCCeEEEEec---ChhHHHHHHHHH-cCCCEEEEECCCC---Chh---HHHHcCC--cc-cCHHHHhccCCEEEEc
Q 006864 225 VSLVGKTLAVMGF---GKVGSEVARRAK-GLGMNVIAHDPYA---PAD---KARAVGV--EL-VSFDQALATADFISLH 290 (628)
Q Consensus 225 ~~l~GktiGIIGl---G~IG~~vA~~l~-~~G~~V~~~d~~~---~~~---~a~~~g~--~~-~sl~ell~~aDvV~l~ 290 (628)
..+.|+||+++|= +++..+.+..+. -+|++|....|.. +.+ .+++.|. +. .++++.++.||+|..-
T Consensus 155 ~~l~g~kia~vGD~~~~rv~~Sl~~~l~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~d~~ea~~~aDvvyt~ 233 (338)
T PRK08192 155 RGIDGMHIAMVGDLKFGRTVHSLSRLLCMYKNVSFTLVSPKELAMPDYVISDIENAGHKITITDQLEGNLDKADILYLT 233 (338)
T ss_pred CCcCCCEEEEECcCCCCchHHHHHHHHHHhcCCEEEEECCccccCCHHHHHHHHHcCCeEEEEcCHHHHHccCCEEEEc
Confidence 3578999999998 578888888766 4499999887753 222 1233343 22 3899999999999883
|
|
| >PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis [] | Back alignment and domain information |
|---|
Probab=94.06 E-value=0.05 Score=51.22 Aligned_cols=94 Identities=21% Similarity=0.310 Sum_probs=57.6
Q ss_pred CeEEEEec-ChhHHHHHHHHHcC--CCEEEEECCCCChhHHHHcCC-----------c-ccCHHHHhccCCEEEEcC--C
Q 006864 230 KTLAVMGF-GKVGSEVARRAKGL--GMNVIAHDPYAPADKARAVGV-----------E-LVSFDQALATADFISLHM--P 292 (628)
Q Consensus 230 ktiGIIGl-G~IG~~vA~~l~~~--G~~V~~~d~~~~~~~a~~~g~-----------~-~~sl~ell~~aDvV~l~~--P 292 (628)
.+|+|||. |.+|+.+|..|... +-++..||..........+.. . .....+.+++||+|+++. |
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~~aDivvitag~~ 80 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPLPSPVRITSGDYEALKDADIVVITAGVP 80 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEEEEEESSGGGGTTESEEEETTSTS
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhcccccccccccccccccccEEEEecccc
Confidence 47999999 99999999999744 468999998742221111110 0 114678889999999988 3
Q ss_pred CCc-cccc-cc--cH-------HHHhcCCCCcEEEEcCCCchhc
Q 006864 293 LNP-TTSK-IF--ND-------ETFAKMKKGVRIVNVARGGVID 325 (628)
Q Consensus 293 lt~-~t~~-li--~~-------~~l~~mk~gailIN~aRg~~vd 325 (628)
..+ +++. ++ |. ..+.+..|.++++.++ ..+|
T Consensus 81 ~~~g~sR~~ll~~N~~i~~~~~~~i~~~~p~~~vivvt--NPvd 122 (141)
T PF00056_consen 81 RKPGMSRLDLLEANAKIVKEIAKKIAKYAPDAIVIVVT--NPVD 122 (141)
T ss_dssp SSTTSSHHHHHHHHHHHHHHHHHHHHHHSTTSEEEE-S--SSHH
T ss_pred ccccccHHHHHHHhHhHHHHHHHHHHHhCCccEEEEeC--CcHH
Confidence 333 1221 11 11 2233445777888874 3455
|
L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C .... |
| >PRK10669 putative cation:proton antiport protein; Provisional | Back alignment and domain information |
|---|
Probab=94.02 E-value=0.088 Score=60.52 Aligned_cols=86 Identities=19% Similarity=0.385 Sum_probs=56.7
Q ss_pred CeEEEEecChhHHHHHHHHHcCCCEEEEECCCCC-hhHHHHcCCccc-----C---HHH-HhccCCEEEEcCCCCccccc
Q 006864 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAP-ADKARAVGVELV-----S---FDQ-ALATADFISLHMPLNPTTSK 299 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~g~~~~-----s---l~e-ll~~aDvV~l~~Plt~~t~~ 299 (628)
-.+-|+|+|++|+.+|+.|+..|.+|++.|.+.. .+..++.|+..+ + |++ -+++||.++++++-.+++..
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~~g~~~i~GD~~~~~~L~~a~i~~a~~viv~~~~~~~~~~ 497 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRERGIRAVLGNAANEEIMQLAHLDCARWLLLTIPNGYEAGE 497 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCeEEEcCCCCHHHHHhcCccccCEEEEEcCChHHHHH
Confidence 4688999999999999999999999999998752 344555565422 2 222 24689989888885554433
Q ss_pred cccHHHHhcCCCCcEEEE
Q 006864 300 IFNDETFAKMKKGVRIVN 317 (628)
Q Consensus 300 li~~~~l~~mk~gailIN 317 (628)
++-. ...+.+...+|-
T Consensus 498 iv~~--~~~~~~~~~iia 513 (558)
T PRK10669 498 IVAS--AREKRPDIEIIA 513 (558)
T ss_pred HHHH--HHHHCCCCeEEE
Confidence 3322 222344545543
|
|
| >cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH) | Back alignment and domain information |
|---|
Probab=93.96 E-value=0.14 Score=42.39 Aligned_cols=59 Identities=15% Similarity=0.316 Sum_probs=42.6
Q ss_pred EEEeccCCCCchhhHHhhhhcCCccccceEEeeeec--CccEEEEEEeCCCC-CH---HHHHHHhc
Q 006864 561 ILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFR--RNHGIMAIGVDEEP-NQ---DSLKEIGK 620 (628)
Q Consensus 561 Llv~~~D~PGvIa~V~~iL~~~~INIa~m~v~R~~~--gg~Al~~i~vD~~~-~~---~~l~~L~~ 620 (628)
+++.-+|+||.++.|.+.++++++||..++ +|..+ .+.....++++... .. ++++.|++
T Consensus 2 l~~~l~d~pG~L~~vL~~f~~~~vni~~I~-Srp~~~~~~~~~f~id~~~~~~~~~~~~~l~~l~~ 66 (75)
T cd04880 2 LVFSLKNKPGALAKALKVFAERGINLTKIE-SRPSRKGLWEYEFFVDFEGHIDDPDVKEALEELKR 66 (75)
T ss_pred EEEEeCCcCCHHHHHHHHHHHCCCCEEEEE-eeecCCCCceEEEEEEEECCCCCHHHHHHHHHHHH
Confidence 455567999999999999999999999994 55333 44556667777642 22 46666665
|
ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech |
| >cd08230 glucose_DH Glucose dehydrogenase | Back alignment and domain information |
|---|
Probab=93.96 E-value=0.13 Score=55.17 Aligned_cols=46 Identities=22% Similarity=0.242 Sum_probs=36.6
Q ss_pred cCCeEEEEecChhHHHHHHHHHcCCCEEEEECCCC----ChhHHHHcCCc
Q 006864 228 VGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA----PADKARAVGVE 273 (628)
Q Consensus 228 ~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~----~~~~a~~~g~~ 273 (628)
.|+++.|+|.|.||...++.++..|.+|++.++.. ..+.++++|+.
T Consensus 172 ~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~~Ga~ 221 (355)
T cd08230 172 NPRRALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEELGAT 221 (355)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCE
Confidence 57899999999999999999999999999998732 22334555654
|
Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai |
| >PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=93.95 E-value=0.12 Score=57.48 Aligned_cols=109 Identities=17% Similarity=0.186 Sum_probs=70.1
Q ss_pred ecCCeEEEEecChhHHHHHHHHHcCCCEEEEECCCCChh---HHHH--cCCccc--C-HHHHhccCCEEEEcCCCCcccc
Q 006864 227 LVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPAD---KARA--VGVELV--S-FDQALATADFISLHMPLNPTTS 298 (628)
Q Consensus 227 l~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~---~a~~--~g~~~~--s-l~ell~~aDvV~l~~Plt~~t~ 298 (628)
+.+|++.|+|.|.+|.++|+.|...|++|.++|...... ..+. .|+... . -+..+..+|+|+..--..+...
T Consensus 3 ~~~~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~~~~~~~l~~~~~gi~~~~g~~~~~~~~~~d~vv~spgi~~~~p 82 (445)
T PRK04308 3 FQNKKILVAGLGGTGISMIAYLRKNGAEVAAYDAELKPERVAQIGKMFDGLVFYTGRLKDALDNGFDILALSPGISERQP 82 (445)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCchhHHHHhhccCCcEEEeCCCCHHHHhCCCEEEECCCCCCCCH
Confidence 568999999999999999999999999999999764321 1111 255432 1 2345578999987543333211
Q ss_pred ----------ccccH-HHHhc-CC---CCcEEEEcCCCchhcHHHHHHHHhC
Q 006864 299 ----------KIFND-ETFAK-MK---KGVRIVNVARGGVIDEEALVRALDS 335 (628)
Q Consensus 299 ----------~li~~-~~l~~-mk---~gailIN~aRg~~vde~aL~~aL~~ 335 (628)
.++.+ +.+.. ++ .-.+-|-=+.|+.--..-+...|+.
T Consensus 83 ~~~~a~~~~i~v~~~~~~~~~~~~~~~~~~I~ITGT~GKTTTt~li~~iL~~ 134 (445)
T PRK04308 83 DIEAFKQNGGRVLGDIELLADIVNRRGDKVIAITGSNGKTTVTSLVGYLCIK 134 (445)
T ss_pred HHHHHHHcCCcEEEhHHHHHHhhhcCCCCEEEEECCCcHHHHHHHHHHHHHH
Confidence 12222 22223 32 2345555567888888888888865
|
|
| >COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.94 E-value=0.09 Score=54.19 Aligned_cols=55 Identities=18% Similarity=0.250 Sum_probs=48.5
Q ss_pred CCcEEEEeccCCCCchhhHHhhhhcCCccccceEEeeeecCccEEEEEEeCCCCC
Q 006864 557 EGNLILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDEEPN 611 (628)
Q Consensus 557 ~~~~Llv~~~D~PGvIa~V~~iL~~~~INIa~m~v~R~~~gg~Al~~i~vD~~~~ 611 (628)
+...|.+..+|+||++++|++.|.++|.||-.-.-+.+..+|.=+|.++++.+-.
T Consensus 6 ~~~~LtvsCpd~~GiVaais~~l~~~g~NI~~~~qf~D~~~g~FFmR~~f~~~~~ 60 (287)
T COG0788 6 DTFILTVSCPDQPGIVAAISGFLAEHGCNIVDSDQFDDPETGRFFMRVEFEGEGG 60 (287)
T ss_pred cceEEEEecCCCCCcHHHHHHHHHHcCCceeecccccccccCeEEEEEEEecCCC
Confidence 4567888999999999999999999999999999887777888899999977554
|
|
| >COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.85 E-value=0.18 Score=53.19 Aligned_cols=95 Identities=19% Similarity=0.243 Sum_probs=62.4
Q ss_pred eeecCCeEEEEecChhHHHHHHHHHcCCC-EEEEECCCCChh--HHHHcC---C--cccCHHHH--hccCCEEEEcCCCC
Q 006864 225 VSLVGKTLAVMGFGKVGSEVARRAKGLGM-NVIAHDPYAPAD--KARAVG---V--ELVSFDQA--LATADFISLHMPLN 294 (628)
Q Consensus 225 ~~l~GktiGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~~~~--~a~~~g---~--~~~sl~el--l~~aDvV~l~~Plt 294 (628)
..+.|+++.|+|.|-.+++++..|+..|. +|.+++|..... .++..+ . ....+.++ +.++|+|+.++|+.
T Consensus 122 ~~~~~~~vlilGAGGAarAv~~aL~~~g~~~i~V~NRt~~ra~~La~~~~~~~~~~~~~~~~~~~~~~~~dliINaTp~G 201 (283)
T COG0169 122 VDVTGKRVLILGAGGAARAVAFALAEAGAKRITVVNRTRERAEELADLFGELGAAVEAAALADLEGLEEADLLINATPVG 201 (283)
T ss_pred cccCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhcccccccccccccccccccCEEEECCCCC
Confidence 45679999999999999999999999995 799999875321 121222 1 12222222 22699999999965
Q ss_pred cccc---ccccHHHHhcCCCCcEEEEcCCCc
Q 006864 295 PTTS---KIFNDETFAKMKKGVRIVNVARGG 322 (628)
Q Consensus 295 ~~t~---~li~~~~l~~mk~gailIN~aRg~ 322 (628)
-.-. .+++ ...++++.++.|+--..
T Consensus 202 m~~~~~~~~~~---~~~l~~~~~v~D~vY~P 229 (283)
T COG0169 202 MAGPEGDSPVP---AELLPKGAIVYDVVYNP 229 (283)
T ss_pred CCCCCCCCCCc---HHhcCcCCEEEEeccCC
Confidence 3322 1233 44467777777765433
|
|
| >cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains | Back alignment and domain information |
|---|
Probab=93.76 E-value=0.21 Score=41.30 Aligned_cols=49 Identities=16% Similarity=0.224 Sum_probs=40.6
Q ss_pred cEEEEeccCCCCchhhHHhhhhcCCccccceEEeeeecCccEEEEEEeCC
Q 006864 559 NLILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDE 608 (628)
Q Consensus 559 ~~Llv~~~D~PGvIa~V~~iL~~~~INIa~m~v~R~~~gg~Al~~i~vD~ 608 (628)
+.+++..+|+||+.+.+++.|..+++||-..++... +.|.++-.+.+.+
T Consensus 2 ~eI~V~~~Dr~gLFa~iag~L~~~~LnI~~A~i~tt-~dG~~LDtF~V~d 50 (68)
T cd04928 2 HEITFAAGDKPKLLSQLSSLLGDLGLNIAEAHAFST-DDGLALDIFVVTG 50 (68)
T ss_pred EEEEEEECCCcchHHHHHHHHHHCCCceEEEEEEEc-CCCeEEEEEEEec
Confidence 467788889999999999999999999999999865 4566766666643
|
This CD includes a novel, yet uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains. |
| >PRK05562 precorrin-2 dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.76 E-value=0.16 Score=51.71 Aligned_cols=90 Identities=9% Similarity=0.077 Sum_probs=60.8
Q ss_pred eeeecCCeEEEEecChhHHHHHHHHHcCCCEEEEECCCCChhHHH--Hc-CCccc--CH-HHHhccCCEEEEcCCCCccc
Q 006864 224 GVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKAR--AV-GVELV--SF-DQALATADFISLHMPLNPTT 297 (628)
Q Consensus 224 g~~l~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~--~~-g~~~~--sl-~ell~~aDvV~l~~Plt~~t 297 (628)
-.++.|+++.|||-|.++..=++.|..+|.+|.++.|....+... .. .+++. ++ .+.+..+++|+.++.
T Consensus 20 ~l~~~~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~i~~el~~l~~~~~i~~~~r~~~~~dl~g~~LViaATd----- 94 (223)
T PRK05562 20 SLLSNKIKVLIIGGGKAAFIKGKTFLKKGCYVYILSKKFSKEFLDLKKYGNLKLIKGNYDKEFIKDKHLIVIATD----- 94 (223)
T ss_pred EEECCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCCCHHHHHHHhCCCEEEEeCCCChHHhCCCcEEEECCC-----
Confidence 346779999999999999998899999999999999987554321 11 12221 11 234577888888764
Q ss_pred cccccHHHHhcCCCCcEEEEc
Q 006864 298 SKIFNDETFAKMKKGVRIVNV 318 (628)
Q Consensus 298 ~~li~~~~l~~mk~gailIN~ 318 (628)
..-+|+.....++.-.+++|+
T Consensus 95 D~~vN~~I~~~a~~~~~lvn~ 115 (223)
T PRK05562 95 DEKLNNKIRKHCDRLYKLYID 115 (223)
T ss_pred CHHHHHHHHHHHHHcCCeEEE
Confidence 223466666656554556665
|
|
| >PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated | Back alignment and domain information |
|---|
Probab=93.73 E-value=0.14 Score=55.45 Aligned_cols=37 Identities=24% Similarity=0.300 Sum_probs=33.5
Q ss_pred eeecCCeEEEEecChhHHHHHHHHHcCCC-EEEEECCC
Q 006864 225 VSLVGKTLAVMGFGKVGSEVARRAKGLGM-NVIAHDPY 261 (628)
Q Consensus 225 ~~l~GktiGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~ 261 (628)
..|..++|.|||+|.+|..+|+.|...|. ++..+|..
T Consensus 20 ~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D 57 (339)
T PRK07688 20 QKLREKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRD 57 (339)
T ss_pred HHhcCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 46889999999999999999999999998 88888865
|
|
| >PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional | Back alignment and domain information |
|---|
Probab=93.67 E-value=0.14 Score=59.65 Aligned_cols=90 Identities=19% Similarity=0.238 Sum_probs=61.8
Q ss_pred CCeEEEEecChhHHHHHHHHHcCCCEEEEECCCCC-hhHHHHcCCccc-----C---HHH-HhccCCEEEEcCCCCcccc
Q 006864 229 GKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAP-ADKARAVGVELV-----S---FDQ-ALATADFISLHMPLNPTTS 298 (628)
Q Consensus 229 GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~g~~~~-----s---l~e-ll~~aDvV~l~~Plt~~t~ 298 (628)
...+-|+|+|++|+.+++.|+..|.++++.|.+.. .+..++.|.... + |++ -+++||.++++++-.+++.
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vv~~~~d~~~n~ 479 (601)
T PRK03659 400 KPQVIIVGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRKYGYKVYYGDATQLELLRAAGAEKAEAIVITCNEPEDTM 479 (601)
T ss_pred cCCEEEecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhCCCeEEEeeCCCHHHHHhcCCccCCEEEEEeCCHHHHH
Confidence 35799999999999999999999999999997752 344555665422 2 222 2678999999998554433
Q ss_pred ccccHHHHhcCCCCcEEEEcCC
Q 006864 299 KIFNDETFAKMKKGVRIVNVAR 320 (628)
Q Consensus 299 ~li~~~~l~~mk~gailIN~aR 320 (628)
.+ -...+++.|...++--+|
T Consensus 480 ~i--~~~~r~~~p~~~IiaRa~ 499 (601)
T PRK03659 480 KI--VELCQQHFPHLHILARAR 499 (601)
T ss_pred HH--HHHHHHHCCCCeEEEEeC
Confidence 32 233444556666665544
|
|
| >PRK04523 N-acetylornithine carbamoyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=93.57 E-value=1.1 Score=48.32 Aligned_cols=99 Identities=22% Similarity=0.157 Sum_probs=63.5
Q ss_pred HHHhcCceEEcCCCCChhhHHHHHHHHHHHHHHchhHHHHHHHcCcccccccceeee-cCCeEEEEecC-------hhHH
Q 006864 171 AATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSKYVGVSL-VGKTLAVMGFG-------KVGS 242 (628)
Q Consensus 171 aa~~~GI~V~n~p~~~~~avAE~~l~l~L~~~R~i~~~~~~~~~g~W~~~~~~g~~l-~GktiGIIGlG-------~IG~ 242 (628)
.+..-+|+|+|+.+. ..++- +++=++.+.++ .| .+ .|++|+|+|.| ++..
T Consensus 132 ~a~~s~vPVINa~~~-~HPtQ--aLaDl~Ti~e~------------------~g-~~~~g~ki~i~~~gd~~~~~~~v~~ 189 (335)
T PRK04523 132 FAKYSTVPVINMETI-THPCQ--ELAHALALQEH------------------FG-TTLRGKKYVLTWTYHPKPLNTAVAN 189 (335)
T ss_pred HHHhCCCCEEECCCC-CChHH--HHHHHHHHHHH------------------hC-CccCCCEEEEEEeccCcccccHHHH
Confidence 344567999999665 33331 22223333331 12 25 68999877643 7888
Q ss_pred HHHHHHHcCCCEEEEECC-C---CChhH-------HHHcCC--cc-cCHHHHhccCCEEEEcC
Q 006864 243 EVARRAKGLGMNVIAHDP-Y---APADK-------ARAVGV--EL-VSFDQALATADFISLHM 291 (628)
Q Consensus 243 ~vA~~l~~~G~~V~~~d~-~---~~~~~-------a~~~g~--~~-~sl~ell~~aDvV~l~~ 291 (628)
+++..+..||++|.+..| . .+.+. +...|. .. .++++.++.||+|..-.
T Consensus 190 S~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~ea~~~aDvvy~~~ 252 (335)
T PRK04523 190 SALLIATRLGMDVTLLCPTPDYILDERYMDWAEQNAAESGGSLTVSHDIDSAYAGADVVYAKS 252 (335)
T ss_pred HHHHHHHHcCCEEEEECCchhhCCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEece
Confidence 999999999999999988 3 22221 123343 22 38999999999998743
|
|
| >PRK05086 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.52 E-value=0.37 Score=51.43 Aligned_cols=91 Identities=20% Similarity=0.170 Sum_probs=55.6
Q ss_pred CeEEEEec-ChhHHHHHHHHH---cCCCEEEEECCCCChh-HHHHc---C----Cc---ccCHHHHhccCCEEEEcCCCC
Q 006864 230 KTLAVMGF-GKVGSEVARRAK---GLGMNVIAHDPYAPAD-KARAV---G----VE---LVSFDQALATADFISLHMPLN 294 (628)
Q Consensus 230 ktiGIIGl-G~IG~~vA~~l~---~~G~~V~~~d~~~~~~-~a~~~---g----~~---~~sl~ell~~aDvV~l~~Plt 294 (628)
++|+|||. |.||+.+|..++ ..+.++..+|+..... .+.++ + +. ..++.+.++.||+|++++-..
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~~~g~alDl~~~~~~~~i~~~~~~d~~~~l~~~DiVIitaG~~ 80 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDPTPALEGADVVLISAGVA 80 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCCCcceehhhhcCCCCceEEEeCCCCHHHHcCCCCEEEEcCCCC
Confidence 58999999 999999998874 3456888898653210 01111 1 11 125668889999999987642
Q ss_pred cc---ccc-cc------cHH---HHhcCCCCcEEEEcCC
Q 006864 295 PT---TSK-IF------NDE---TFAKMKKGVRIVNVAR 320 (628)
Q Consensus 295 ~~---t~~-li------~~~---~l~~mk~gailIN~aR 320 (628)
.. ++. ++ -++ .+....+.+++++++-
T Consensus 81 ~~~~~~R~dll~~N~~i~~~ii~~i~~~~~~~ivivvsN 119 (312)
T PRK05086 81 RKPGMDRSDLFNVNAGIVKNLVEKVAKTCPKACIGIITN 119 (312)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccC
Confidence 21 111 11 122 2333456788888864
|
|
| >PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=93.51 E-value=0.15 Score=57.41 Aligned_cols=109 Identities=20% Similarity=0.233 Sum_probs=69.3
Q ss_pred ecCCeEEEEecChhHHHHHHHHHcCCCEEEEECCCCC--hhHHHHc--CCccc---CHHHHhccCCEEEEcCCCCccc--
Q 006864 227 LVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAP--ADKARAV--GVELV---SFDQALATADFISLHMPLNPTT-- 297 (628)
Q Consensus 227 l~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~--~~~a~~~--g~~~~---sl~ell~~aDvV~l~~Plt~~t-- 297 (628)
+.||+++|+|+|.-|.++|+.|+..|++|+++|.... .....++ +.... ...+.+.++|+|+..--..+..
T Consensus 6 ~~~~~v~v~G~G~sG~~~~~~l~~~g~~v~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~vV~SpgI~~~~p~ 85 (468)
T PRK04690 6 LEGRRVALWGWGREGRAAYRALRAHLPAQALTLFCNAVEAREVGALADAALLVETEASAQRLAAFDVVVKSPGISPYRPE 85 (468)
T ss_pred cCCCEEEEEccchhhHHHHHHHHHcCCEEEEEcCCCcccchHHHHHhhcCEEEeCCCChHHccCCCEEEECCCCCCCCHH
Confidence 4689999999999999999999999999999996431 1111111 22221 1235567899997754222221
Q ss_pred --------cccccHHHH--hc-CC-----CCcEEEEcCCCchhcHHHHHHHHhC
Q 006864 298 --------SKIFNDETF--AK-MK-----KGVRIVNVARGGVIDEEALVRALDS 335 (628)
Q Consensus 298 --------~~li~~~~l--~~-mk-----~gailIN~aRg~~vde~aL~~aL~~ 335 (628)
..++++-+| .. ++ ...+-|-=+.|+.--..-+...|+.
T Consensus 86 ~~~a~~~~i~i~~~~el~~~~~~~~~~~~~~~IaITGTnGKTTTt~ll~~iL~~ 139 (468)
T PRK04690 86 ALAAAARGTPFIGGTALWFAEHAARDGVVPGTVCVTGTKGKSTTTALLAHLLRA 139 (468)
T ss_pred HHHHHHcCCcEEEHHHHHHHHHhhccCCCCCEEEEeCCCCHHHHHHHHHHHHHh
Confidence 123444443 32 32 1345566577888888888888865
|
|
| >PRK10637 cysG siroheme synthase; Provisional | Back alignment and domain information |
|---|
Probab=93.51 E-value=0.19 Score=56.47 Aligned_cols=91 Identities=15% Similarity=0.047 Sum_probs=66.5
Q ss_pred eeeecCCeEEEEecChhHHHHHHHHHcCCCEEEEECCCCChhHH--HHc-CCccc--C-HHHHhccCCEEEEcCCCCccc
Q 006864 224 GVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKA--RAV-GVELV--S-FDQALATADFISLHMPLNPTT 297 (628)
Q Consensus 224 g~~l~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a--~~~-g~~~~--s-l~ell~~aDvV~l~~Plt~~t 297 (628)
-.+|.||++.|||-|.++..=++.|..+|++|.++.|....+.. ... .+++. + .++.++.+++|+.++.-.
T Consensus 7 ~~~l~~~~vlvvGgG~vA~rk~~~ll~~ga~v~visp~~~~~~~~l~~~~~i~~~~~~~~~~dl~~~~lv~~at~d~--- 83 (457)
T PRK10637 7 FCQLRDRDCLLVGGGDVAERKARLLLDAGARLTVNALAFIPQFTAWADAGMLTLVEGPFDESLLDTCWLAIAATDDD--- 83 (457)
T ss_pred EEEcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHhCCCEEEEeCCCChHHhCCCEEEEECCCCH---
Confidence 46899999999999999999889999999999999987654431 111 22221 1 245678899988886522
Q ss_pred cccccHHHHhcCCCCcEEEEcC
Q 006864 298 SKIFNDETFAKMKKGVRIVNVA 319 (628)
Q Consensus 298 ~~li~~~~l~~mk~gailIN~a 319 (628)
-+|++....++...+++|++
T Consensus 84 --~~n~~i~~~a~~~~~lvN~~ 103 (457)
T PRK10637 84 --AVNQRVSEAAEARRIFCNVV 103 (457)
T ss_pred --HHhHHHHHHHHHcCcEEEEC
Confidence 35777777777777888875
|
|
| >PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=93.50 E-value=0.17 Score=56.46 Aligned_cols=107 Identities=22% Similarity=0.191 Sum_probs=68.0
Q ss_pred CCeEEEEecChhHHHHHHHHHcCCCEEEEECCCCCh---hHHHH--cCCccc---CHHHHhccCCEEEEcCCCCcccc--
Q 006864 229 GKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPA---DKARA--VGVELV---SFDQALATADFISLHMPLNPTTS-- 298 (628)
Q Consensus 229 GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~---~~a~~--~g~~~~---sl~ell~~aDvV~l~~Plt~~t~-- 298 (628)
.-+++|+|+|.+|.++|+.|+..|++|.++|..... +..++ .|+... .-.+.+.++|+|+..--..+...
T Consensus 6 ~~~~~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~d~vV~sp~i~~~~p~~ 85 (448)
T PRK03803 6 DGLHIVVGLGKTGLSVVRFLARQGIPFAVMDSREQPPGLDTLAREFPDVELRCGGFDCELLVQASEIIISPGLALDTPAL 85 (448)
T ss_pred CCeEEEEeecHhHHHHHHHHHhCCCeEEEEeCCCCchhHHHHHhhcCCcEEEeCCCChHHhcCCCEEEECCCCCCCCHHH
Confidence 458999999999999999999999999999975422 11222 265442 12345678998876432222111
Q ss_pred --------ccccHH-HHhc-CCCCcEEEEcCCCchhcHHHHHHHHhC
Q 006864 299 --------KIFNDE-TFAK-MKKGVRIVNVARGGVIDEEALVRALDS 335 (628)
Q Consensus 299 --------~li~~~-~l~~-mk~gailIN~aRg~~vde~aL~~aL~~ 335 (628)
.++.+- .+.. ++.-.+-|-=+.|+.--..-+...|+.
T Consensus 86 ~~a~~~~i~i~~~~el~~~~~~~~~I~VTGT~GKTTTt~li~~iL~~ 132 (448)
T PRK03803 86 RAAAAMGIEVIGDIELFAREAKAPVIAITGSNGKSTVTTLVGEMAKA 132 (448)
T ss_pred HHHHHCCCcEEEHHHHHHHhcCCCEEEEECCCcHHHHHHHHHHHHHh
Confidence 123332 2222 343445555577888888888888875
|
|
| >PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase | Back alignment and domain information |
|---|
Probab=93.49 E-value=0.15 Score=55.96 Aligned_cols=95 Identities=19% Similarity=0.244 Sum_probs=59.9
Q ss_pred ecCCeEEEEec-ChhHHHHHHHHHcC-CCEEEEECCCCChh-HHHHcC-------C-cccCHHH-HhccCCEEEEcCCCC
Q 006864 227 LVGKTLAVMGF-GKVGSEVARRAKGL-GMNVIAHDPYAPAD-KARAVG-------V-ELVSFDQ-ALATADFISLHMPLN 294 (628)
Q Consensus 227 l~GktiGIIGl-G~IG~~vA~~l~~~-G~~V~~~d~~~~~~-~a~~~g-------~-~~~sl~e-ll~~aDvV~l~~Plt 294 (628)
..-++|+|+|. |.+|+++.+.|... ++++..+....... ...... . ...+++. .++++|+|++++|-.
T Consensus 36 ~~~~kVaIvGATG~vG~eLlrlL~~hP~~el~~l~s~~saG~~i~~~~~~l~~~~~~~~~~~~~~~~~~~DvVf~Alp~~ 115 (381)
T PLN02968 36 EEKKRIFVLGASGYTGAEVRRLLANHPDFEITVMTADRKAGQSFGSVFPHLITQDLPNLVAVKDADFSDVDAVFCCLPHG 115 (381)
T ss_pred ccccEEEEECCCChHHHHHHHHHHhCCCCeEEEEEChhhcCCCchhhCccccCccccceecCCHHHhcCCCEEEEcCCHH
Confidence 34569999997 99999999999877 67887764332111 000001 1 1112222 248899999999842
Q ss_pred ccccccccHHHHhcCCCCcEEEEcCCCchhcHH
Q 006864 295 PTTSKIFNDETFAKMKKGVRIVNVARGGVIDEE 327 (628)
Q Consensus 295 ~~t~~li~~~~l~~mk~gailIN~aRg~~vde~ 327 (628)
...+....|+.|+.+|+.+..-..+.+
T Consensus 116 ------~s~~i~~~~~~g~~VIDlSs~fRl~~~ 142 (381)
T PLN02968 116 ------TTQEIIKALPKDLKIVDLSADFRLRDI 142 (381)
T ss_pred ------HHHHHHHHHhCCCEEEEcCchhccCCc
Confidence 234455556788999999855444443
|
|
| >PLN02948 phosphoribosylaminoimidazole carboxylase | Back alignment and domain information |
|---|
Probab=93.44 E-value=0.2 Score=58.01 Aligned_cols=68 Identities=18% Similarity=0.316 Sum_probs=49.4
Q ss_pred eecCCeEEEEecChhHHHHHHHHHcCCCEEEEECCCCChh--HHHHcCC--cccC---HHHHhccCCEEEEcCCC
Q 006864 226 SLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPAD--KARAVGV--ELVS---FDQALATADFISLHMPL 293 (628)
Q Consensus 226 ~l~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~--~a~~~g~--~~~s---l~ell~~aDvV~l~~Pl 293 (628)
.+..|+|||||-|..|+.+++.++.+|++|+++|+..... ...+..+ .+.+ +.++++++|+|+.....
T Consensus 19 ~~~~k~IgIIGgGqlg~mla~aA~~lG~~Vi~ld~~~~apa~~~AD~~~v~~~~D~~~l~~~a~~~dvIt~e~e~ 93 (577)
T PLN02948 19 GVSETVVGVLGGGQLGRMLCQAASQMGIKVKVLDPLEDCPASSVAARHVVGSFDDRAAVREFAKRCDVLTVEIEH 93 (577)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhCceeeeCCCCCHHHHHHHHHHCCEEEEecCC
Confidence 3778999999999999999999999999999999865311 1111111 1223 56677889999776543
|
|
| >PRK05690 molybdopterin biosynthesis protein MoeB; Provisional | Back alignment and domain information |
|---|
Probab=93.44 E-value=0.13 Score=53.02 Aligned_cols=37 Identities=19% Similarity=0.290 Sum_probs=32.7
Q ss_pred eeecCCeEEEEecChhHHHHHHHHHcCCC-EEEEECCC
Q 006864 225 VSLVGKTLAVMGFGKVGSEVARRAKGLGM-NVIAHDPY 261 (628)
Q Consensus 225 ~~l~GktiGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~ 261 (628)
..|+.++|+|||+|.+|..+|+.|...|. ++..+|..
T Consensus 28 ~~L~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D 65 (245)
T PRK05690 28 EKLKAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFD 65 (245)
T ss_pred HHhcCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 46899999999999999999999998886 78888754
|
|
| >COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.43 E-value=0.17 Score=53.66 Aligned_cols=64 Identities=17% Similarity=0.322 Sum_probs=47.5
Q ss_pred CeEEEEecChhHH-HHHHHHHcCC--CEEE-EECCCCC--hhHHHHcCCc--ccCHHHHhcc--CCEEEEcCCC
Q 006864 230 KTLAVMGFGKVGS-EVARRAKGLG--MNVI-AHDPYAP--ADKARAVGVE--LVSFDQALAT--ADFISLHMPL 293 (628)
Q Consensus 230 ktiGIIGlG~IG~-~vA~~l~~~G--~~V~-~~d~~~~--~~~a~~~g~~--~~sl~ell~~--aDvV~l~~Pl 293 (628)
.++||||+|.|++ ..+..++..+ +++. ++|+... ...+++.++. +.+++++++. .|+|++++|-
T Consensus 4 irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~iD~V~Iatp~ 77 (342)
T COG0673 4 IRVGIIGAGGIAGKAHLPALAALGGGLELVAVVDRDPERAEAFAEEFGIAKAYTDLEELLADPDIDAVYIATPN 77 (342)
T ss_pred eEEEEEcccHHHHHHhHHHHHhCCCceEEEEEecCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEcCCC
Confidence 5899999997775 4888888776 4554 4688753 2345667764 4589999986 5999999993
|
|
| >COG0440 IlvH Acetolactate synthase, small (regulatory) subunit [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.43 E-value=0.17 Score=48.81 Aligned_cols=70 Identities=17% Similarity=0.281 Sum_probs=54.0
Q ss_pred CCcEEEEeccCCCCchhhHHhhhhcCCccccceEEeeeecCccEEEEEEeCC--CCCHHHHHHHhcccCccc
Q 006864 557 EGNLILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDE--EPNQDSLKEIGKVHFVAR 626 (628)
Q Consensus 557 ~~~~Llv~~~D~PGvIa~V~~iL~~~~INIa~m~v~R~~~gg~Al~~i~vD~--~~~~~~l~~L~~l~~v~~ 626 (628)
..++|-+.-.|+||++.++..++++.|.||..+.++-.+..+.+-|.+-+.. ..-+.+.++|.++-++.+
T Consensus 3 m~rilsvlv~ne~GvLsRv~glfsrRG~NIeSltv~~tE~~~~SRiTivv~g~~~~~EQi~kQL~kLidV~k 74 (163)
T COG0440 3 MRRILSLLVENEPGVLSRVTGLFSRRGYNIESLTVGPTETPGLSRITIVVSGDEQVLEQIIKQLNKLIDVLK 74 (163)
T ss_pred ceEEEEEEEECCCCeeehhhHHHHhcCcccceEEEEecCCCCceEEEEEEcCCcchHHHHHHHHHhhcccee
Confidence 4577777788999999999999999999999999998877777777666655 334456666666555544
|
|
| >cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively | Back alignment and domain information |
|---|
Probab=93.39 E-value=0.15 Score=53.98 Aligned_cols=86 Identities=20% Similarity=0.295 Sum_probs=56.7
Q ss_pred eEEEEecChhHHHHHHHHHcCCC-EEEEECCCC-------------Chh-------------HHHHc--CCcc--c----
Q 006864 231 TLAVMGFGKVGSEVARRAKGLGM-NVIAHDPYA-------------PAD-------------KARAV--GVEL--V---- 275 (628)
Q Consensus 231 tiGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~-------------~~~-------------~a~~~--g~~~--~---- 275 (628)
++.|+|.|.+|..+|+.|...|. ++..+|... ..+ ..++. +++. .
T Consensus 1 kVLIvGaGGLGs~vA~~La~aGVg~ItlvD~D~Ve~sNL~RQ~L~~~~D~~iGk~Ka~aaa~~L~~iNP~v~v~~~~~~I 80 (307)
T cd01486 1 KCLLLGAGTLGCNVARNLLGWGVRHITFVDSGKVSYSNPVRQSLFTFEDCKGGKPKAEAAAERLKEIFPSIDATGIVLSI 80 (307)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEeccccCCcccccccchhhcCccHHHHHHHHHHHHCCCcEEEEeeeec
Confidence 58999999999999999999996 677776321 000 00111 1110 0
Q ss_pred --------------------CHHHHhccCCEEEEcCCCCccccccccHHHHhcCCCCcEEEEcCC
Q 006864 276 --------------------SFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVAR 320 (628)
Q Consensus 276 --------------------sl~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aR 320 (628)
.++++++++|+|+.++- +-+++.+++..-... +..+||.+-
T Consensus 81 pmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~d~tD-n~esR~L~~~~~~~~---~k~~I~aal 141 (307)
T cd01486 81 PMPGHPISESEVPSTLKDVKRLEELIKDHDVIFLLTD-SRESRWLPTLLSAAK---NKLVINAAL 141 (307)
T ss_pred cccccccccccccccccCHHHHHHHHhhCCEEEECCC-CHHHHHHHHHHHHHh---CCcEEEEEe
Confidence 15688999999999985 666787777655543 336777643
|
This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole. |
| >PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase | Back alignment and domain information |
|---|
Probab=93.33 E-value=0.31 Score=59.69 Aligned_cols=66 Identities=15% Similarity=0.304 Sum_probs=45.9
Q ss_pred cCCeEEEEecChhHHHHHHHHHcC-CCE-------------EEEECCCCChhH--HHHc-CC---c--ccCHHHH---hc
Q 006864 228 VGKTLAVMGFGKVGSEVARRAKGL-GMN-------------VIAHDPYAPADK--ARAV-GV---E--LVSFDQA---LA 282 (628)
Q Consensus 228 ~GktiGIIGlG~IG~~vA~~l~~~-G~~-------------V~~~d~~~~~~~--a~~~-g~---~--~~sl~el---l~ 282 (628)
+.|+|+|||.|.||+.+|+.|... +.+ |.+.|++....+ +... ++ . ..+.+++ ++
T Consensus 568 ~~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~~~~~~v~lDv~D~e~L~~~v~ 647 (1042)
T PLN02819 568 KSQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGIENAEAVQLDVSDSESLLKYVS 647 (1042)
T ss_pred cCCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhcCCCceEEeecCCHHHHHHhhc
Confidence 478999999999999999999754 333 888898753222 2222 32 1 1244444 46
Q ss_pred cCCEEEEcCCC
Q 006864 283 TADFISLHMPL 293 (628)
Q Consensus 283 ~aDvV~l~~Pl 293 (628)
++|+|++++|.
T Consensus 648 ~~DaVIsalP~ 658 (1042)
T PLN02819 648 QVDVVISLLPA 658 (1042)
T ss_pred CCCEEEECCCc
Confidence 89999999995
|
|
| >PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=93.33 E-value=0.33 Score=53.91 Aligned_cols=108 Identities=19% Similarity=0.182 Sum_probs=68.3
Q ss_pred ecCCeEEEEecChhHHHHHHHHHcCCCEEEEECCCCChh--HHHHcCCccc---CHHHHhccCCEEEEcCCCCccccc--
Q 006864 227 LVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPAD--KARAVGVELV---SFDQALATADFISLHMPLNPTTSK-- 299 (628)
Q Consensus 227 l~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~--~a~~~g~~~~---sl~ell~~aDvV~l~~Plt~~t~~-- 299 (628)
+.+|++.|+|+|..|.+.++.|+..|.+|.++|...... ...+.|+... .-.+.+...|+|+. -|--+....
T Consensus 4 ~~~~~i~v~G~G~sG~s~~~~l~~~G~~v~~~D~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~d~vv~-spgi~~~~~~~ 82 (438)
T PRK03806 4 YQGKKVVIIGLGLTGLSCVDFFLARGVTPRVIDTRITPPGLDKLPENVERHTGSLNDEWLLAADLIVA-SPGIALAHPSL 82 (438)
T ss_pred cCCCEEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCCCchhHHHHhcCCEEEeCCCCHHHhcCCCEEEE-CCCCCCCCHHH
Confidence 568899999999999999999999999999999654321 1122255432 12245677897655 443332221
Q ss_pred ---------cccH-HHHhc-CCCCcEEEEcCCCchhcHHHHHHHHhC
Q 006864 300 ---------IFND-ETFAK-MKKGVRIVNVARGGVIDEEALVRALDS 335 (628)
Q Consensus 300 ---------li~~-~~l~~-mk~gailIN~aRg~~vde~aL~~aL~~ 335 (628)
++.+ +.+.. ++.-.+-|-=+.|+.--..-|...|+.
T Consensus 83 ~~a~~~g~~v~~~~el~~~~~~~~~I~VTGTnGKTTTt~ll~~iL~~ 129 (438)
T PRK03806 83 SAAADAGIEIVGDIELFCREAQAPIVAITGSNGKSTVTTLVGEMAKA 129 (438)
T ss_pred HHHHHCCCeEEEHHHHHhhhcCCCEEEEeCCCCHHHHHHHHHHHHHH
Confidence 2222 23332 232344455567888888888888874
|
|
| >PRK14027 quinate/shikimate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.31 E-value=0.41 Score=50.41 Aligned_cols=69 Identities=22% Similarity=0.243 Sum_probs=48.2
Q ss_pred eecCCeEEEEecChhHHHHHHHHHcCCC-EEEEECCCCChh--HHHHc----CC---cccC---HHHHhccCCEEEEcCC
Q 006864 226 SLVGKTLAVMGFGKVGSEVARRAKGLGM-NVIAHDPYAPAD--KARAV----GV---ELVS---FDQALATADFISLHMP 292 (628)
Q Consensus 226 ~l~GktiGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~~~~--~a~~~----g~---~~~s---l~ell~~aDvV~l~~P 292 (628)
.+.||++.|+|.|-.|++++-.|...|+ +|.++||..... .+... +. ...+ +++.+..+|+|+.++|
T Consensus 124 ~~~~k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~~~divINaTp 203 (283)
T PRK14027 124 NAKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVINNAVGREAVVGVDARGIEDVIAAADGVVNATP 203 (283)
T ss_pred CcCCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhccCcceEEecCHhHHHHHHhhcCEEEEcCC
Confidence 3557999999999999999999999997 788999864221 11111 11 1112 2345677899999888
Q ss_pred CC
Q 006864 293 LN 294 (628)
Q Consensus 293 lt 294 (628)
+.
T Consensus 204 ~G 205 (283)
T PRK14027 204 MG 205 (283)
T ss_pred CC
Confidence 54
|
|
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=93.09 E-value=0.22 Score=46.71 Aligned_cols=64 Identities=25% Similarity=0.336 Sum_probs=46.6
Q ss_pred cCCeEEEEecChhHHHHHHHHHcCCCEEEEECCCCC-hhHHHHcCCccc--C----HHHHhccCCEEEEcCC
Q 006864 228 VGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAP-ADKARAVGVELV--S----FDQALATADFISLHMP 292 (628)
Q Consensus 228 ~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~g~~~~--s----l~ell~~aDvV~l~~P 292 (628)
+++++..||+| -|..+|..|+..|.+|++.|.... .+.+++.+...+ + --++-+.+|+|.-.=|
T Consensus 16 ~~~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~~~~~v~dDlf~p~~~~y~~a~liysirp 86 (134)
T PRK04148 16 KNKKIVELGIG-FYFKVAKKLKESGFDVIVIDINEKAVEKAKKLGLNAFVDDLFNPNLEIYKNAKLIYSIRP 86 (134)
T ss_pred cCCEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHHHHHHHHHhCCeEEECcCCCCCHHHHhcCCEEEEeCC
Confidence 56889999999 999999999999999999997753 233444454322 1 2356677777766665
|
|
| >PRK12861 malic enzyme; Reviewed | Back alignment and domain information |
|---|
Probab=93.06 E-value=3.9 Score=48.82 Aligned_cols=172 Identities=18% Similarity=0.126 Sum_probs=113.5
Q ss_pred CceEEcCCCCChhhHHHHHHHHHHHHHHchhHHHHHHHcCcccccccceeeecCCeEEEEecChhHHHHHHHHHcCCC--
Q 006864 176 GCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGM-- 253 (628)
Q Consensus 176 GI~V~n~p~~~~~avAE~~l~l~L~~~R~i~~~~~~~~~g~W~~~~~~g~~l~GktiGIIGlG~IG~~vA~~l~~~G~-- 253 (628)
.|+|.|.-- .-+|=-+++-+++.+| ..|..+...+|.|.|.|.-|-.+|+.+...|.
T Consensus 157 ~ipvf~DD~---qGTa~v~lA~llnal~------------------~~gk~l~d~~iv~~GAGaAg~~ia~~l~~~G~~~ 215 (764)
T PRK12861 157 KIPVFHDDQ---HGTAITVSAAFINGLK------------------VVGKSIKEVKVVTSGAGAAALACLDLLVDLGLPV 215 (764)
T ss_pred CCCeecccc---chHHHHHHHHHHHHHH------------------HhCCChhHcEEEEECHhHHHHHHHHHHHHcCCCh
Confidence 799999832 2344456666777666 24667888999999999999999999999998
Q ss_pred -EEEEECCCC----------Ch---hHHHHcCCcccCHHHHhccCCEEEEcCCCCccccccccHHHHhcCCCCcEEEEcC
Q 006864 254 -NVIAHDPYA----------PA---DKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVA 319 (628)
Q Consensus 254 -~V~~~d~~~----------~~---~~a~~~g~~~~sl~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~a 319 (628)
+++.+|+.- .. ..++. -...+|.|+++.+|+++= +. +-+.+.++.++.|.+..+|.=.+
T Consensus 216 ~~i~~~D~~Gli~~~r~~~l~~~k~~~a~~--~~~~~L~eai~~advliG-~S----~~g~ft~e~v~~Ma~~PIIFaLs 288 (764)
T PRK12861 216 ENIWVTDIEGVVYRGRTTLMDPDKERFAQE--TDARTLAEVIGGADVFLG-LS----AGGVLKAEMLKAMAARPLILALA 288 (764)
T ss_pred hhEEEEcCCCeeeCCCcccCCHHHHHHHhh--cCCCCHHHHHhcCCEEEE-cC----CCCCCCHHHHHHhccCCEEEECC
Confidence 788888431 11 11221 133489999999998855 32 25899999999999999999998
Q ss_pred CCchhcHHHHHHHHhCCC-eeEEEeeccCCCCCCCCCccccCCcEEEcCCCCC---------CcHHHHHHHHHHHHH
Q 006864 320 RGGVIDEEALVRALDSGV-VAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGA---------STKEAQEGVAIEIAE 386 (628)
Q Consensus 320 Rg~~vde~aL~~aL~~g~-i~ga~lDV~~~EP~~~~~~L~~~~nvilTPHig~---------~T~ea~~~~~~~~~~ 386 (628)
....--.-..+.. -.|+ |.+.|-- ..| =+..|+++-|-++- -|++.+...+..+++
T Consensus 289 NPtpE~~pe~a~~-~~g~aivaTGrs---~~p-------nQ~NN~l~FPgi~~Gal~~~a~~I~~~M~~aAa~alA~ 354 (764)
T PRK12861 289 NPTPEIFPELAHA-TRDDVVIATGRS---DYP-------NQVNNVLCFPYIFRGALDVGATTITREMEIAAVHAIAG 354 (764)
T ss_pred CCCccCCHHHHHh-cCCCEEEEeCCc---CCC-------CccceeeecchhhHHHHHcCCccCCHHHHHHHHHHHHh
Confidence 8664211122222 2344 5333211 111 24568999997763 355555554444444
|
|
| >TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=92.95 E-value=0.31 Score=52.43 Aligned_cols=31 Identities=32% Similarity=0.613 Sum_probs=25.2
Q ss_pred eEEEEecChhHHHHHHHHHcCC----CEEEEECCC
Q 006864 231 TLAVMGFGKVGSEVARRAKGLG----MNVIAHDPY 261 (628)
Q Consensus 231 tiGIIGlG~IG~~vA~~l~~~G----~~V~~~d~~ 261 (628)
+|||+|+|+||+.+.+.|...+ ++|...+..
T Consensus 1 ~IaInGfGrIGR~vlr~l~e~~~~~~~~vvaInd~ 35 (325)
T TIGR01532 1 RVAINGFGRIGRNVLRALYESGERLGIEVVALNEL 35 (325)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCCeEEEEEecC
Confidence 5899999999999999987653 788876543
|
Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species. |
| >TIGR00036 dapB dihydrodipicolinate reductase | Back alignment and domain information |
|---|
Probab=92.89 E-value=0.39 Score=50.09 Aligned_cols=63 Identities=22% Similarity=0.373 Sum_probs=43.5
Q ss_pred CeEEEEe-cChhHHHHHHHHHc-CCCEEEE-ECCCCCh----hHHHH-----cCCcc-cCHHHHhccCCEEEEcCC
Q 006864 230 KTLAVMG-FGKVGSEVARRAKG-LGMNVIA-HDPYAPA----DKARA-----VGVEL-VSFDQALATADFISLHMP 292 (628)
Q Consensus 230 ktiGIIG-lG~IG~~vA~~l~~-~G~~V~~-~d~~~~~----~~a~~-----~g~~~-~sl~ell~~aDvV~l~~P 292 (628)
.+|+|+| +|+||+.+++.+.. -++++.+ +|+..+. +.... .++.. .+++++...+|+|+.+.|
T Consensus 2 ikV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~~~~~~~~~~~~~~~~~~~~gv~~~~d~~~l~~~~DvVIdfT~ 77 (266)
T TIGR00036 2 IKVAVAGAAGRMGRELIKAALAAEGLQLVAAFERHGSSLQGTDAGELAGIGKVGVPVTDDLEAVETDPDVLIDFTT 77 (266)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccCCCHHHhcCcCcCCceeeCCHHHhcCCCCEEEECCC
Confidence 3799999 79999999999875 5788776 6743211 11111 23433 378888667899999886
|
|
| >TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase | Back alignment and domain information |
|---|
Probab=92.84 E-value=0.53 Score=52.18 Aligned_cols=106 Identities=21% Similarity=0.264 Sum_probs=68.4
Q ss_pred eEEEEecChhHHHHHHHHHcCCCEEEEECCCCChh--H----HH-HcCCccc--CHHHHhccCCEEEEcCCCCcccc---
Q 006864 231 TLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPAD--K----AR-AVGVELV--SFDQALATADFISLHMPLNPTTS--- 298 (628)
Q Consensus 231 tiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~--~----a~-~~g~~~~--sl~ell~~aDvV~l~~Plt~~t~--- 298 (628)
++.|||+|.+|.++|+.|+..|++|.++|...... . .+ ..|+... .-.+.+..+|+|+..--..+...
T Consensus 1 ~~~~iG~G~~G~a~a~~l~~~G~~V~~sD~~~~~~~~~~~~~~~~~~gi~~~~g~~~~~~~~~d~vv~sp~i~~~~p~~~ 80 (433)
T TIGR01087 1 KILILGLGKTGRAVARFLHKKGAEVTVTDLKPNEELEPSMGQLRLNEGSVLHTGLHLEDLNNADLVVKSPGIPPDHPLVQ 80 (433)
T ss_pred CEEEEEeCHhHHHHHHHHHHCCCEEEEEeCCCCccchhHHHHHhhccCcEEEecCchHHhccCCEEEECCCCCCCCHHHH
Confidence 47899999999999999999999999999654211 1 11 2466542 11455688998877542222211
Q ss_pred -------ccccHHHH--hcCCCCcEEEEcCCCchhcHHHHHHHHhCC
Q 006864 299 -------KIFNDETF--AKMKKGVRIVNVARGGVIDEEALVRALDSG 336 (628)
Q Consensus 299 -------~li~~~~l--~~mk~gailIN~aRg~~vde~aL~~aL~~g 336 (628)
.++.+.+| ..++.-.+-|.=+.|+.--..-+...|+..
T Consensus 81 ~a~~~~i~i~~~~e~~~~~~~~~~I~VTGT~GKTTTt~li~~iL~~~ 127 (433)
T TIGR01087 81 AAAKRGIPVVGDIELFLRLVPLPVVAITGTNGKTTTTSLLYHLLKAA 127 (433)
T ss_pred HHHHCCCcEEEHHHHHHhhcCCCEEEEECCCCHHHHHHHHHHHHHhc
Confidence 12333322 223444566666789988888888888763
|
|
| >COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.82 E-value=0.21 Score=48.31 Aligned_cols=33 Identities=15% Similarity=0.351 Sum_probs=29.9
Q ss_pred EeccCCCCchhhHHhhhhcCCccccceEEeeee
Q 006864 563 CRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTF 595 (628)
Q Consensus 563 v~~~D~PGvIa~V~~iL~~~~INIa~m~v~R~~ 595 (628)
+...|+||++.+++.+|.++||||++|..-|..
T Consensus 97 v~a~DrpgIv~~~T~lf~~~~inie~L~~~~~~ 129 (176)
T COG2716 97 VDANDRPGIVEEFTALFDGHGINIENLVSRTYP 129 (176)
T ss_pred EEecCCccHHHHHHHHHHhcCCchhhceeeeee
Confidence 557899999999999999999999999997744
|
|
| >PRK15057 UDP-glucose 6-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.81 E-value=0.3 Score=53.72 Aligned_cols=63 Identities=17% Similarity=0.174 Sum_probs=50.9
Q ss_pred ecCCeEEEEecC----------hhHHHHHHHHHcCCCEEEEECCCCChhHHHHcCCccc-CHHHHhccCCEEEEcC
Q 006864 227 LVGKTLAVMGFG----------KVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELV-SFDQALATADFISLHM 291 (628)
Q Consensus 227 l~GktiGIIGlG----------~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~-sl~ell~~aDvV~l~~ 291 (628)
..|++|+|+|+. .-...+++.|...|.+|.+|||...... ..++.+. +++++++.||.|++..
T Consensus 294 ~~~~~i~vlGlafK~~t~D~R~Sp~~~i~~~L~~~G~~v~~~DP~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 367 (388)
T PRK15057 294 RKPQVVGIYRLIMKSGSDNFRASSIQGIMKRIKAKGVEVIIYEPVMKEDS--FFNSRLERDLATFKQQADVIISNR 367 (388)
T ss_pred hcCCEEEEEcceeCCCCCccccChHHHHHHHHHhCCCEEEEECCCCCchh--hcCCeeeCCHHHHHHhCCEEEEcC
Confidence 368999999993 4567899999999999999999864432 3466555 7999999999999854
|
|
| >PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase | Back alignment and domain information |
|---|
Probab=92.77 E-value=0.18 Score=55.12 Aligned_cols=81 Identities=25% Similarity=0.327 Sum_probs=50.1
Q ss_pred EEEEecChhHHHHHHHHHcCC-C-EEEEECCCCChh-HHHH--c--CCcc--------cCHHHHhccCCEEEEcCCCCcc
Q 006864 232 LAVMGFGKVGSEVARRAKGLG-M-NVIAHDPYAPAD-KARA--V--GVEL--------VSFDQALATADFISLHMPLNPT 296 (628)
Q Consensus 232 iGIIGlG~IG~~vA~~l~~~G-~-~V~~~d~~~~~~-~a~~--~--g~~~--------~sl~ell~~aDvV~l~~Plt~~ 296 (628)
|+|+|.|.+|+.+++.|...+ + +|++.|++.... ...+ . .++. .+|+++++++|+|+.|+|-.
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~dvVin~~gp~-- 78 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKLLGDRVEAVQVDVNDPESLAELLRGCDVVINCAGPF-- 78 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT--TTTTEEEEE--TTTHHHHHHHHTTSSEEEE-SSGG--
T ss_pred CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhccccceeEEEEecCCHHHHHHHHhcCCEEEECCccc--
Confidence 689999999999999998776 5 899999875331 1111 1 1211 13788999999999999733
Q ss_pred ccccccHHHHh-cCCCCcEEEEc
Q 006864 297 TSKIFNDETFA-KMKKGVRIVNV 318 (628)
Q Consensus 297 t~~li~~~~l~-~mk~gailIN~ 318 (628)
.+...++ .++.|+-.||+
T Consensus 79 ----~~~~v~~~~i~~g~~yvD~ 97 (386)
T PF03435_consen 79 ----FGEPVARACIEAGVHYVDT 97 (386)
T ss_dssp ----GHHHHHHHHHHHT-EEEES
T ss_pred ----hhHHHHHHHHHhCCCeecc
Confidence 2222222 23456666663
|
Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A. |
| >PRK08762 molybdopterin biosynthesis protein MoeB; Validated | Back alignment and domain information |
|---|
Probab=92.75 E-value=0.32 Score=53.26 Aligned_cols=75 Identities=15% Similarity=0.127 Sum_probs=50.3
Q ss_pred hHHHhcCceEEcCCCCChhhHHHHHHHHHHHHHHchhHHHHHHHcCcccccccceeeecCCeEEEEecChhHHHHHHHHH
Q 006864 170 QAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAK 249 (628)
Q Consensus 170 ~aa~~~GI~V~n~p~~~~~avAE~~l~l~L~~~R~i~~~~~~~~~g~W~~~~~~g~~l~GktiGIIGlG~IG~~vA~~l~ 249 (628)
.+..+.|-.+...+......... ..|++ .-+.|... .-..+.+++|.|+|+|.+|..+|+.|.
T Consensus 93 ~~W~~~g~p~~~~~~~s~~~~~~--------y~r~i-------~l~~~g~~--~q~~l~~~~VlvvG~GG~Gs~ia~~La 155 (376)
T PRK08762 93 SAWKDAGLPLERPRLLTDEQDER--------YSRHL-------RLPEVGEE--GQRRLLEARVLLIGAGGLGSPAALYLA 155 (376)
T ss_pred HHHHhcCCccccccCCCHHHHHH--------HHHhc-------chhhcCHH--HHHHHhcCcEEEECCCHHHHHHHHHHH
Confidence 44556677777666655444322 22333 22234321 123588999999999999999999999
Q ss_pred cCCC-EEEEECCC
Q 006864 250 GLGM-NVIAHDPY 261 (628)
Q Consensus 250 ~~G~-~V~~~d~~ 261 (628)
..|. ++..+|+.
T Consensus 156 ~~Gvg~i~lvD~d 168 (376)
T PRK08762 156 AAGVGTLGIVDHD 168 (376)
T ss_pred HcCCCeEEEEeCC
Confidence 9997 78888875
|
|
| >TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p | Back alignment and domain information |
|---|
Probab=92.72 E-value=0.26 Score=57.17 Aligned_cols=118 Identities=15% Similarity=0.212 Sum_probs=76.1
Q ss_pred CChhhHHHHHHHHHHHHHHchhHHHHHHHcCcccccccce-eeecCCeEEEEecChhHHHHHHHHHcCCC-EEEEECCCC
Q 006864 185 ANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSKYVG-VSLVGKTLAVMGFGKVGSEVARRAKGLGM-NVIAHDPYA 262 (628)
Q Consensus 185 ~~~~avAE~~l~l~L~~~R~i~~~~~~~~~g~W~~~~~~g-~~l~GktiGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~ 262 (628)
.+....||.++-|=|-+.| |.--...+ ..|++.++.|||.|.+|..+|+.|.+.|. ++..+|...
T Consensus 306 mdP~~la~~avdlnlkLmk-------------WRllP~l~~ekL~~~kVLIvGaGGLGs~VA~~La~~GVg~ItlVD~D~ 372 (664)
T TIGR01381 306 FDPKRLAERSVDLNLKLMK-------------WRLHPDLQLERYSQLKVLLLGAGTLGCNVARCLIGWGVRHITFVDNGK 372 (664)
T ss_pred cCHHHHHHHHHHHHHHHHh-------------hhcCChhhHHHHhcCeEEEECCcHHHHHHHHHHHHcCCCeEEEEcCCE
Confidence 4556677777766665554 65322122 46889999999999999999999999997 577766310
Q ss_pred ------------Chh-----------HH----HHc--CCc------c-------c-------------CHHHHhccCCEE
Q 006864 263 ------------PAD-----------KA----RAV--GVE------L-------V-------------SFDQALATADFI 287 (628)
Q Consensus 263 ------------~~~-----------~a----~~~--g~~------~-------~-------------sl~ell~~aDvV 287 (628)
..+ .+ ++. +++ . + .++++++++|+|
T Consensus 373 Ve~SNL~RQ~Lf~~~Dv~~~Gk~KA~aAa~~Lk~InP~v~i~~~~~~Ipm~Gh~i~~~~~~~~~~d~~~l~~Li~~~DvV 452 (664)
T TIGR01381 373 VSYSNPVRQSLSNFEDCLLGGRGKAETAQKALKRIFPSIQATGHRLTVPMPGHPIDEKDVPELEKDIARLEQLIKDHDVV 452 (664)
T ss_pred ECCCccccccccchhhhhhcCCcHHHHHHHHHHHHCCCcEEEEeeeeeccccccCCchhhhhccccHHHHHHHHhhCCEE
Confidence 000 00 111 010 0 1 245788999999
Q ss_pred EEcCCCCccccccccHHHHhcCCCCcEEEEcC
Q 006864 288 SLHMPLNPTTSKIFNDETFAKMKKGVRIVNVA 319 (628)
Q Consensus 288 ~l~~Plt~~t~~li~~~~l~~mk~gailIN~a 319 (628)
+.++- +-++|.+++..-..+ +..+|+.+
T Consensus 453 ~d~tD-n~esR~L~n~~c~~~---~kplI~aA 480 (664)
T TIGR01381 453 FLLLD-SREARWLPTVLCSRH---KKIAISAA 480 (664)
T ss_pred EECCC-CHHHHHHHHHHHHHh---CCCEEEEE
Confidence 99887 667888887665543 44566654
|
This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy. |
| >TIGR01161 purK phosphoribosylaminoimidazole carboxylase, PurK protein | Back alignment and domain information |
|---|
Probab=92.71 E-value=0.28 Score=52.92 Aligned_cols=59 Identities=25% Similarity=0.391 Sum_probs=43.3
Q ss_pred eEEEEecChhHHHHHHHHHcCCCEEEEECCCCCh--hHHHHcCC--cccC---HHHHhccCCEEEE
Q 006864 231 TLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPA--DKARAVGV--ELVS---FDQALATADFISL 289 (628)
Q Consensus 231 tiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~--~~a~~~g~--~~~s---l~ell~~aDvV~l 289 (628)
||||||-|..|+.+++.++.+|++|+++|+.... ....+..+ ...+ +.++++.||+|+.
T Consensus 1 ~igiiG~gql~~~l~~aa~~lG~~v~~~d~~~~~p~~~~ad~~~~~~~~d~~~i~~~a~~~dvit~ 66 (352)
T TIGR01161 1 TVGILGGGQLGRMLALAARPLGIKVHVLDPDANSPAVQVADHVVLAPFFDPAAIRELAESCDVITF 66 (352)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCEEEEECCCCCCChhHhCceeEeCCCCCHHHHHHHHhhCCEEEe
Confidence 6999999999999999999999999999986522 11111111 1223 6778889999854
|
Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, N5-carboxyaminoimidazole ribonucleotide synthetase, which hydrolyzes ATP and converts AIR to N5-CAIR. PurE converts N5-CAIR to CAIR. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. |
| >TIGR02355 moeB molybdopterin synthase sulfurylase MoeB | Back alignment and domain information |
|---|
Probab=92.69 E-value=0.15 Score=52.42 Aligned_cols=37 Identities=19% Similarity=0.331 Sum_probs=32.3
Q ss_pred eeecCCeEEEEecChhHHHHHHHHHcCCC-EEEEECCC
Q 006864 225 VSLVGKTLAVMGFGKVGSEVARRAKGLGM-NVIAHDPY 261 (628)
Q Consensus 225 ~~l~GktiGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~ 261 (628)
..|++++|.|+|+|.+|..+|+.|...|. ++..+|+.
T Consensus 20 ~~L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D 57 (240)
T TIGR02355 20 EALKASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFD 57 (240)
T ss_pred HHHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 35889999999999999999999998885 67777754
|
This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899). |
| >PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B | Back alignment and domain information |
|---|
Probab=92.68 E-value=0.18 Score=48.29 Aligned_cols=63 Identities=29% Similarity=0.300 Sum_probs=47.0
Q ss_pred EEEEe-cChhHHHHHHHHHcCCCEEEEECCCCChhHHHHcCCcc--------cCHHHHhccCCEEEEcCCCCc
Q 006864 232 LAVMG-FGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVEL--------VSFDQALATADFISLHMPLNP 295 (628)
Q Consensus 232 iGIIG-lG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~--------~sl~ell~~aDvV~l~~Plt~ 295 (628)
|.|+| .|.+|+.+++.|...|.+|.++-|....... ..+++. .++.+.++.+|.|+.+++-..
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~-~~~~~~~~~d~~d~~~~~~al~~~d~vi~~~~~~~ 72 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRGHEVTALVRSPSKAED-SPGVEIIQGDLFDPDSVKAALKGADAVIHAAGPPP 72 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHH-CTTEEEEESCTTCHHHHHHHHTTSSEEEECCHSTT
T ss_pred eEEECCCChHHHHHHHHHHHCCCEEEEEecCchhccc-ccccccceeeehhhhhhhhhhhhcchhhhhhhhhc
Confidence 57888 5999999999999999999999877532211 334332 135778889999999997544
|
... |
| >cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=92.66 E-value=0.99 Score=45.25 Aligned_cols=35 Identities=40% Similarity=0.489 Sum_probs=32.0
Q ss_pred cCCeEEEEecChhHHHHHHHHHcCCCEEEEECCCC
Q 006864 228 VGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA 262 (628)
Q Consensus 228 ~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~ 262 (628)
.|+++.|.|.|.+|+.+++.++..|.+|++.++..
T Consensus 134 ~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~ 168 (271)
T cd05188 134 PGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSD 168 (271)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCH
Confidence 57899999999999999999999999999998764
|
The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro |
| >PRK03815 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=92.63 E-value=0.26 Score=54.43 Aligned_cols=103 Identities=15% Similarity=0.168 Sum_probs=64.5
Q ss_pred CeEEEEecChhHHHHHHHHHcCCCEEEEECCCCChhHHHHcCCcccCHHHHh--ccCCEEEEcCCCCccc------cccc
Q 006864 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQAL--ATADFISLHMPLNPTT------SKIF 301 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~sl~ell--~~aDvV~l~~Plt~~t------~~li 301 (628)
+++.|+|+|..|.++|+.|+ .|.+|.++|.........+.|+.... ++.+ .++|+|+..--..+.. +.++
T Consensus 1 ~~v~v~G~G~sG~a~a~~L~-~G~~V~~~D~~~~~~~~~~~gi~~~~-~~~~~~~~~d~vv~sp~i~~~~~~~~~a~~i~ 78 (401)
T PRK03815 1 MKISLFGYGKTTKALAKFLK-KFGGVDIFDDKFTESHKDEEGNLLLP-SNDFDPNKSDLEIPSPGIPPSHPLIQKAKNLI 78 (401)
T ss_pred CeEEEEeECHHHHHHHHHHh-CCCeEEEEcCCCCccchhhcCCEEec-HHHcCcCCCCEEEECCCCCCCCHHHHHHHHHh
Confidence 36899999999999999999 99999999954322212234655432 2234 4689886652222221 1123
Q ss_pred cHHH-Hh-cCCCCcEEEEcCCCchhcHHHHHHHHhC
Q 006864 302 NDET-FA-KMKKGVRIVNVARGGVIDEEALVRALDS 335 (628)
Q Consensus 302 ~~~~-l~-~mk~gailIN~aRg~~vde~aL~~aL~~ 335 (628)
.+-. +. .++ ..+-|-=+-|+.--.+-+...|+.
T Consensus 79 ~~~e~~~~~~~-~~i~ITGT~GKTTTt~ml~~iL~~ 113 (401)
T PRK03815 79 SEYDYFYDVMP-FSIWISGTNGKTTTTQMTTHLLED 113 (401)
T ss_pred hHHHHHHHhcC-CEEEEECCCcHHHHHHHHHHHHHH
Confidence 3322 22 243 355566677888888888888875
|
|
| >TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=92.58 E-value=0.39 Score=49.83 Aligned_cols=45 Identities=31% Similarity=0.467 Sum_probs=35.6
Q ss_pred cCCeEEEEecChhHHHHHHHHHcCCCE-EEEECCCC-ChhHHHHcCC
Q 006864 228 VGKTLAVMGFGKVGSEVARRAKGLGMN-VIAHDPYA-PADKARAVGV 272 (628)
Q Consensus 228 ~GktiGIIGlG~IG~~vA~~l~~~G~~-V~~~d~~~-~~~~a~~~g~ 272 (628)
.|+++.|+|.|.||...++.++.+|.+ |++.|+.. ..+.++++|+
T Consensus 120 ~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga 166 (280)
T TIGR03366 120 KGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSFGA 166 (280)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCC
Confidence 588999999999999999999999986 88887654 2234455554
|
This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds. |
| >TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit | Back alignment and domain information |
|---|
Probab=92.57 E-value=0.44 Score=50.33 Aligned_cols=103 Identities=20% Similarity=0.215 Sum_probs=68.9
Q ss_pred CCeEEEEecChhHHHHHHHHHcCCCEEEEECCCCChhHHHHcCCcccCH-HHHhccCCEEEEcCCCCccccc--------
Q 006864 229 GKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSF-DQALATADFISLHMPLNPTTSK-------- 299 (628)
Q Consensus 229 GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~sl-~ell~~aDvV~l~~Plt~~t~~-------- 299 (628)
|++++|||-=.--..+++.|...|++|..|.-....... .|+...++ ++.++++|+|++-+|.+.+...
T Consensus 1 ~~~~~v~ggd~r~~~~~~~l~~~g~~v~~~g~~~~~~~~--~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~i~~~~~~~ 78 (287)
T TIGR02853 1 GIHIAVIGGDARQLELIRKLEELDAKISLIGFDQLEDGF--TGAVKCELLELDLTTLDVVILPVPGTSHDGKVATVFSNE 78 (287)
T ss_pred CcEEEEEcccHHHHHHHHHHHHCCCEEEEEecccccccc--ccceeecchhhhhccCCEEEECCccccCCceEecccccC
Confidence 689999999999999999999999998776422110101 15555544 4558999999999997665211
Q ss_pred --cccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhCCCe
Q 006864 300 --IFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVV 338 (628)
Q Consensus 300 --li~~~~l~~mk~gailIN~aRg~~vde~aL~~aL~~g~i 338 (628)
-++++.++.|+++++ +-++ ++..++-++.++..|
T Consensus 79 ~~~l~~~~l~~~~~~~~-~~~G----~~~~~l~~~a~~~gi 114 (287)
T TIGR02853 79 KVVLTPELLESTKGHCT-IYVG----ISNPYLEQLAADAGV 114 (287)
T ss_pred CccccHHHHHhcCCCCE-EEEe----cCCHHHHHHHHHCCC
Confidence 246788999997654 4444 333444445555555
|
This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA. |
| >cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins | Back alignment and domain information |
|---|
Probab=92.55 E-value=1.1 Score=41.68 Aligned_cols=100 Identities=14% Similarity=0.171 Sum_probs=57.9
Q ss_pred eEEEEecChhHHHHHHHHHcCCC-EEEEECCCC-C-hhH-------HHHcCCccc-----CHHHHhccCCEEEEcCCCCc
Q 006864 231 TLAVMGFGKVGSEVARRAKGLGM-NVIAHDPYA-P-ADK-------ARAVGVELV-----SFDQALATADFISLHMPLNP 295 (628)
Q Consensus 231 tiGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~-~-~~~-------a~~~g~~~~-----sl~ell~~aDvV~l~~Plt~ 295 (628)
++.|+|+|.+|..+|+.|...|. ++..+|+.. . ... ....|...+ .+.++-+..++-......++
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~~p~v~i~~~~~~~~~ 80 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDTVELSNLNRQFLARQADIGKPKAEVAARRLNELNPGVNVTAVPEGISE 80 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCcCcchhhccccCChhHCCChHHHHHHHHHHHHCCCcEEEEEeeecCh
Confidence 58999999999999999999997 799998763 1 111 122232111 23344444444443322221
Q ss_pred cccccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhCCCe
Q 006864 296 TTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVV 338 (628)
Q Consensus 296 ~t~~li~~~~l~~mk~gailIN~aRg~~vde~aL~~aL~~g~i 338 (628)
......+++--++|+|.-. .-....+.++.+...+
T Consensus 81 -------~~~~~~~~~~diVi~~~d~-~~~~~~l~~~~~~~~i 115 (143)
T cd01483 81 -------DNLDDFLDGVDLVIDAIDN-IAVRRALNRACKELGI 115 (143)
T ss_pred -------hhHHHHhcCCCEEEECCCC-HHHHHHHHHHHHHcCC
Confidence 1113345667788887643 4445556666666544
|
This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. |
| >PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional | Back alignment and domain information |
|---|
Probab=92.53 E-value=0.22 Score=58.15 Aligned_cols=89 Identities=19% Similarity=0.273 Sum_probs=59.8
Q ss_pred CCeEEEEecChhHHHHHHHHHcCCCEEEEECCCCC-hhHHHHcCCccc-----CHH----HHhccCCEEEEcCCCCcccc
Q 006864 229 GKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAP-ADKARAVGVELV-----SFD----QALATADFISLHMPLNPTTS 298 (628)
Q Consensus 229 GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~g~~~~-----sl~----ell~~aDvV~l~~Plt~~t~ 298 (628)
...+-|+|+|++|+.+|+.|++.|.++++.|.+.. .+..++.|+... +.+ .-+++||.++++++-.+.+.
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vvv~~~d~~~n~ 479 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAIDDPQTSL 479 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhcCCeEEEEeCCCHHHHHhcCCCcCCEEEEEeCCHHHHH
Confidence 46899999999999999999999999999987753 334455665432 222 23568999999997444332
Q ss_pred ccccHHHHhcCCCCcEEEEcC
Q 006864 299 KIFNDETFAKMKKGVRIVNVA 319 (628)
Q Consensus 299 ~li~~~~l~~mk~gailIN~a 319 (628)
.+ -...+.+.|...++--+
T Consensus 480 ~i--~~~ar~~~p~~~iiaRa 498 (621)
T PRK03562 480 QL--VELVKEHFPHLQIIARA 498 (621)
T ss_pred HH--HHHHHHhCCCCeEEEEE
Confidence 22 23344455665555433
|
|
| >COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=92.48 E-value=1.5 Score=46.66 Aligned_cols=138 Identities=15% Similarity=0.192 Sum_probs=82.1
Q ss_pred CeEEEEecChhHHHHHHHHHcCCCEEEEECCCCChhHHHHcCCccc-------------CHHHHhccCCEEEEcCCCCcc
Q 006864 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELV-------------SFDQALATADFISLHMPLNPT 296 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~-------------sl~ell~~aDvV~l~~Plt~~ 296 (628)
++|.|+|.|.||.-++.+|...|..|...-+....++.++.|.... .-.+.+..+|+|++++-- -+
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~~~~~l~~~GL~i~~~~~~~~~~~~~~~~~~~~~~~Dlviv~vKa-~q 79 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAGHDVTLLVRSRRLEALKKKGLRIEDEGGNFTTPVVAATDAEALGPADLVIVTVKA-YQ 79 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCeEEEEecHHHHHHHHhCCeEEecCCCccccccccccChhhcCCCCEEEEEecc-cc
Confidence 4799999999999999999999977777765543344444453211 223566789999998742 22
Q ss_pred ccccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhCCCeeEEEeeccC---CCCCCCCCccccCCcEEEcCCCCCCc
Q 006864 297 TSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFT---EEPPAKDSKLVQHENVTVTPHLGAST 373 (628)
Q Consensus 297 t~~li~~~~l~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~ga~lDV~~---~EP~~~~~~L~~~~nvilTPHig~~T 373 (628)
+...+ +.....+++.+.|+-.-- ++=.++.+.+.+...++.+ |+..++ .+|- .-.......+.+.+.-+...
T Consensus 80 ~~~al-~~l~~~~~~~t~vl~lqN-G~g~~e~l~~~~~~~~il~-G~~~~~a~~~~~g--~v~~~g~g~~~ig~~~~~~~ 154 (307)
T COG1893 80 LEEAL-PSLAPLLGPNTVVLFLQN-GLGHEEELRKILPKETVLG-GVTTHGAVREGPG--HVVHTGLGDTVIGELRGGRD 154 (307)
T ss_pred HHHHH-HHhhhcCCCCcEEEEEeC-CCcHHHHHHHhCCcceEEE-EEeeeeeEecCCc--eEEEecCCcEEEccCCCCch
Confidence 33322 344455677776664433 3444556666666654432 222222 1221 11233456777877777664
|
|
| >cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein) | Back alignment and domain information |
|---|
Probab=92.40 E-value=0.54 Score=39.46 Aligned_cols=56 Identities=14% Similarity=0.131 Sum_probs=41.3
Q ss_pred EeccCCCCchhhHHhhhhcCCccccceEEeeeecCccEEEEEEeCC---C-CCHHHHHHHh
Q 006864 563 CRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDE---E-PNQDSLKEIG 619 (628)
Q Consensus 563 v~~~D~PGvIa~V~~iL~~~~INIa~m~v~R~~~gg~Al~~i~vD~---~-~~~~~l~~L~ 619 (628)
+..+|+||..+.++..|.++|+||...++... .+|.++=.+.+.+ . .+++.+++|+
T Consensus 5 i~~~Dr~gLfa~i~~~l~~~~l~I~~A~I~Tt-~~~~v~D~F~V~d~~~~~~~~~~~~~l~ 64 (76)
T cd04927 5 LFCSDRKGLLHDVTEVLYELELTIERVKVSTT-PDGRVLDLFFITDARELLHTKKRREETY 64 (76)
T ss_pred EEECCCCCHHHHHHHHHHHCCCeEEEEEEEEC-CCCEEEEEEEEeCCCCCCCCHHHHHHHH
Confidence 45679999999999999999999999999853 5567766666522 2 2445455444
|
This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains. |
| >TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=92.31 E-value=0.38 Score=51.24 Aligned_cols=87 Identities=20% Similarity=0.185 Sum_probs=54.8
Q ss_pred cCCeEEEEecChhHHHHHHHHHcCCCEEEEECCCC-ChhHHHHcCCccc-CHHH-HhccCCEEEEcCCCCccccccccHH
Q 006864 228 VGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA-PADKARAVGVELV-SFDQ-ALATADFISLHMPLNPTTSKIFNDE 304 (628)
Q Consensus 228 ~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~g~~~~-sl~e-ll~~aDvV~l~~Plt~~t~~li~~~ 304 (628)
.|.++.|.|.|.+|...++.++.+|++|++.++.. ..+.++++|+..+ +..+ .-...|+++.+.... + .-..
T Consensus 165 ~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~~~~~a~~~Ga~~vi~~~~~~~~~~d~~i~~~~~~-~----~~~~ 239 (329)
T TIGR02822 165 PGGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAAARRLALALGAASAGGAYDTPPEPLDAAILFAPAG-G----LVPP 239 (329)
T ss_pred CCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHhCCceeccccccCcccceEEEECCCcH-H----HHHH
Confidence 37899999999999999999999999999988764 3455677776432 2111 112245554443321 1 1234
Q ss_pred HHhcCCCCcEEEEcC
Q 006864 305 TFAKMKKGVRIVNVA 319 (628)
Q Consensus 305 ~l~~mk~gailIN~a 319 (628)
.++.++++..++.++
T Consensus 240 ~~~~l~~~G~~v~~G 254 (329)
T TIGR02822 240 ALEALDRGGVLAVAG 254 (329)
T ss_pred HHHhhCCCcEEEEEe
Confidence 455566666666554
|
Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized. |
| >PTZ00325 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.29 E-value=0.29 Score=52.53 Aligned_cols=67 Identities=19% Similarity=0.213 Sum_probs=45.8
Q ss_pred ecCCeEEEEec-ChhHHHHHHHHHc--CCCEEEEECCCCChhHHHHc-----CCccc------CHHHHhccCCEEEEcCC
Q 006864 227 LVGKTLAVMGF-GKVGSEVARRAKG--LGMNVIAHDPYAPADKARAV-----GVELV------SFDQALATADFISLHMP 292 (628)
Q Consensus 227 l~GktiGIIGl-G~IG~~vA~~l~~--~G~~V~~~d~~~~~~~a~~~-----g~~~~------sl~ell~~aDvV~l~~P 292 (628)
++.++|+|||. |+||..+|..+.. ..-++..+|.......+.++ ..... +..+.++.||+|++++-
T Consensus 6 ~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~~~~g~a~Dl~~~~~~~~v~~~td~~~~~~~l~gaDvVVitaG 85 (321)
T PTZ00325 6 LKMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIVGAPGVAADLSHIDTPAKVTGYADGELWEKALRGADLVLICAG 85 (321)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecCCCcccccchhhcCcCceEEEecCCCchHHHhCCCCEEEECCC
Confidence 56679999999 9999999999984 44689999973322211110 11111 12678999999998765
Q ss_pred C
Q 006864 293 L 293 (628)
Q Consensus 293 l 293 (628)
.
T Consensus 86 ~ 86 (321)
T PTZ00325 86 V 86 (321)
T ss_pred C
Confidence 3
|
|
| >COG3830 ACT domain-containing protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.25 E-value=0.099 Score=45.37 Aligned_cols=30 Identities=30% Similarity=0.423 Sum_probs=26.5
Q ss_pred EEeccCCCCchhhHHhhhhcCCccccceEE
Q 006864 562 LCRQVDQPGMIGKVGNILGEHNVNVNFMSV 591 (628)
Q Consensus 562 lv~~~D~PGvIa~V~~iL~~~~INIa~m~v 591 (628)
-+.-+|+||+++.|++.|+++|+||-++.-
T Consensus 7 TV~GkDr~GIva~is~vLAe~~vNIldisQ 36 (90)
T COG3830 7 TVIGKDRVGIVAAVSRVLAEHGVNILDISQ 36 (90)
T ss_pred EEEcCCCCchhHHHHHHHHHcCCcEEEHHH
Confidence 345699999999999999999999998764
|
|
| >PLN02272 glyceraldehyde-3-phosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=92.22 E-value=0.39 Score=53.16 Aligned_cols=36 Identities=33% Similarity=0.647 Sum_probs=30.1
Q ss_pred CeEEEEecChhHHHHHHHHHc-CCCEEEE-ECCCCChh
Q 006864 230 KTLAVMGFGKVGSEVARRAKG-LGMNVIA-HDPYAPAD 265 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~-~G~~V~~-~d~~~~~~ 265 (628)
.++||.|||+||+.+++.+.. ++++|++ .||....+
T Consensus 86 ~kvgInGFGRIGR~v~R~~~~~~~i~vvaINdp~~~~~ 123 (421)
T PLN02272 86 TKIGINGFGRIGRLVLRIATSRDDIEVVAVNDPFIDAK 123 (421)
T ss_pred eEEEEECcCHHHHHHHHHHhhcCCcEEEEecCCCCCHH
Confidence 489999999999999999874 8999988 67765443
|
|
| >PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=92.21 E-value=0.35 Score=54.31 Aligned_cols=107 Identities=21% Similarity=0.227 Sum_probs=65.5
Q ss_pred cCCeEEEEecChhHHHHHHHHHcCCCEEEEECCCCCh-hHHHHc-CCccc--CHHHHhccCCEEEEcCCCCccc------
Q 006864 228 VGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPA-DKARAV-GVELV--SFDQALATADFISLHMPLNPTT------ 297 (628)
Q Consensus 228 ~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~~-g~~~~--sl~ell~~aDvV~l~~Plt~~t------ 297 (628)
.||+++|+|+|.-|.++|+.|+. |.+|+++|..... ....+. ..... .-.+.+.++|+|+..=-..+..
T Consensus 5 ~~~~v~v~G~G~sG~a~~~~L~~-g~~v~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vV~SPgI~~~~p~~~~a 83 (454)
T PRK01368 5 TKQKIGVFGLGKTGISVYEELQN-KYDVIVYDDLKANRDIFEELYSKNAIAALSDSRWQNLDKIVLSPGIPLTHEIVKIA 83 (454)
T ss_pred CCCEEEEEeecHHHHHHHHHHhC-CCEEEEECCCCCchHHHHhhhcCceeccCChhHhhCCCEEEECCCCCCCCHHHHHH
Confidence 47899999999999999999995 9999999954321 111111 11111 1234567899987753222211
Q ss_pred ----cccccHHHH--hcCCC-CcEEEEcCCCchhcHHHHHHHHhC
Q 006864 298 ----SKIFNDETF--AKMKK-GVRIVNVARGGVIDEEALVRALDS 335 (628)
Q Consensus 298 ----~~li~~~~l--~~mk~-gailIN~aRg~~vde~aL~~aL~~ 335 (628)
..++++-+| ..+++ -.+=|-=+.|+.--..-+...|+.
T Consensus 84 ~~~gi~v~~e~el~~~~~~~~~~IaVTGTnGKTTTt~ll~~iL~~ 128 (454)
T PRK01368 84 KNFNIPITSDIDLLFEKSKNLKFIAITGTNGKSTTTALISHILNS 128 (454)
T ss_pred HHCCCceecHHHHHHHHhcCCCEEEEECCCcHHHHHHHHHHHHHh
Confidence 123444333 23332 234445567888888888888875
|
|
| >PLN02602 lactate dehydrogenase | Back alignment and domain information |
|---|
Probab=92.17 E-value=0.36 Score=52.42 Aligned_cols=89 Identities=16% Similarity=0.259 Sum_probs=55.5
Q ss_pred CeEEEEecChhHHHHHHHHHcCCC--EEEEECCCCChhHHHHc---------C-Ccc---cCHHHHhccCCEEEEcCCCC
Q 006864 230 KTLAVMGFGKVGSEVARRAKGLGM--NVIAHDPYAPADKARAV---------G-VEL---VSFDQALATADFISLHMPLN 294 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~G~--~V~~~d~~~~~~~a~~~---------g-~~~---~sl~ell~~aDvV~l~~Plt 294 (628)
++|+|||.|.||..+|..+...|. ++..+|..........+ + ... .+. +.+++||+|+++.-..
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~~~~~~~~~~i~~~~dy-~~~~daDiVVitAG~~ 116 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAAAFLPRTKILASTDY-AVTAGSDLCIVTAGAR 116 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHhhhhcCCCCEEEeCCCH-HHhCCCCEEEECCCCC
Confidence 699999999999999999986664 79999976532211111 1 111 133 4489999999985432
Q ss_pred --c-cccc-cc--cH-------HHHhcCCCCcEEEEcC
Q 006864 295 --P-TTSK-IF--ND-------ETFAKMKKGVRIVNVA 319 (628)
Q Consensus 295 --~-~t~~-li--~~-------~~l~~mk~gailIN~a 319 (628)
+ +++. ++ |. ..+....+.+++|+++
T Consensus 117 ~k~g~tR~dll~~N~~I~~~i~~~I~~~~p~~ivivvt 154 (350)
T PLN02602 117 QIPGESRLNLLQRNVALFRKIIPELAKYSPDTILLIVS 154 (350)
T ss_pred CCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence 1 2231 11 11 2233456777888887
|
|
| >PRK08644 thiamine biosynthesis protein ThiF; Provisional | Back alignment and domain information |
|---|
Probab=92.13 E-value=0.36 Score=48.66 Aligned_cols=37 Identities=24% Similarity=0.271 Sum_probs=32.7
Q ss_pred eeecCCeEEEEecChhHHHHHHHHHcCCC-EEEEECCC
Q 006864 225 VSLVGKTLAVMGFGKVGSEVARRAKGLGM-NVIAHDPY 261 (628)
Q Consensus 225 ~~l~GktiGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~ 261 (628)
..|+.+++.|||+|.+|..+|+.|...|. ++..+|..
T Consensus 24 ~~L~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D 61 (212)
T PRK08644 24 EKLKKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFD 61 (212)
T ss_pred HHHhCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 35889999999999999999999998887 58888865
|
|
| >cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein) | Back alignment and domain information |
|---|
Probab=92.00 E-value=0.61 Score=39.01 Aligned_cols=58 Identities=10% Similarity=0.131 Sum_probs=44.1
Q ss_pred EEEeccCCCCchhhHHhhhhcCCccccceEEeeeecCccEEEEEEe---C-CCC-CHHHHHHHhc
Q 006864 561 ILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGV---D-EEP-NQDSLKEIGK 620 (628)
Q Consensus 561 Llv~~~D~PGvIa~V~~iL~~~~INIa~m~v~R~~~gg~Al~~i~v---D-~~~-~~~~l~~L~~ 620 (628)
+=+...|+||.+..|+..|.+.|++|..-.+. ..|+.+.=++-+ + .++ +++.+++|++
T Consensus 4 iev~a~DRpGLL~~i~~~l~~~gl~I~~AkIs--T~Gerv~DvFyV~d~~g~kl~d~~~~~~l~~ 66 (72)
T cd04895 4 VKVDSARKPGILLEAVQVLTDLDLCITKAYIS--SDGGWFMDVFHVTDQLGNKLTDDSLIAYIEK 66 (72)
T ss_pred EEEEECCcCCHHHHHHHHHHHCCcEEEEEEEe--ecCCeEEEEEEEECCCCCCCCCHHHHHHHHH
Confidence 44567999999999999999999999999986 566677655555 2 233 4577777764
|
This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains. |
| >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed | Back alignment and domain information |
|---|
Probab=91.90 E-value=0.32 Score=54.03 Aligned_cols=67 Identities=13% Similarity=0.133 Sum_probs=46.8
Q ss_pred ecCCeEEEEecChhHHHHHHHHHcCCCEEEEECCCCCh-hHHHHc--CCccc-----C---H-HHHhccCCEEEEcCCC
Q 006864 227 LVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPA-DKARAV--GVELV-----S---F-DQALATADFISLHMPL 293 (628)
Q Consensus 227 l~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~~--g~~~~-----s---l-~ell~~aDvV~l~~Pl 293 (628)
+..+++.|+|+|.+|+.+++.|...|.+|+++|..... +...+. ++..+ + | +.-+.++|.|+++++-
T Consensus 229 ~~~~~iiIiG~G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~~~~~~i~gd~~~~~~L~~~~~~~a~~vi~~~~~ 307 (453)
T PRK09496 229 KPVKRVMIVGGGNIGYYLAKLLEKEGYSVKLIERDPERAEELAEELPNTLVLHGDGTDQELLEEEGIDEADAFIALTND 307 (453)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHCCCCeEEECCCCCHHHHHhcCCccCCEEEECCCC
Confidence 45689999999999999999999999999999876432 222221 33211 2 2 2235688888887763
|
|
| >PLN02586 probable cinnamyl alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=91.85 E-value=0.7 Score=49.93 Aligned_cols=45 Identities=24% Similarity=0.456 Sum_probs=35.2
Q ss_pred cCCeEEEEecChhHHHHHHHHHcCCCEEEEECCCCCh--hHHHHcCC
Q 006864 228 VGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPA--DKARAVGV 272 (628)
Q Consensus 228 ~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~--~~a~~~g~ 272 (628)
.|+++.|.|.|.+|...++.++.+|.+|++.+..... +.++++|+
T Consensus 183 ~g~~VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~~~~~~~~~~~~~Ga 229 (360)
T PLN02586 183 PGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISSSSNKEDEAINRLGA 229 (360)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCcchhhhHHHhCCC
Confidence 5789999999999999999999999999887655322 23345554
|
|
| >PF04016 DUF364: Domain of unknown function (DUF364); InterPro: IPR007161 This is a entry represents of bacterial and archaeal proteins of unknown function | Back alignment and domain information |
|---|
Probab=91.81 E-value=0.24 Score=47.05 Aligned_cols=85 Identities=14% Similarity=0.166 Sum_probs=54.8
Q ss_pred ecCCeEEEEecChhHHHHHHHHHcCCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEcCCCCcccccccc---H
Q 006864 227 LVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFN---D 303 (628)
Q Consensus 227 l~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~sl~ell~~aDvV~l~~Plt~~t~~li~---~ 303 (628)
..|+++++||+= +.++++++..+.++.++|...........++.....++++++||+|++.-- -++| +
T Consensus 9 ~~~~~V~~VG~f---~P~~~~l~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~l~~aD~viiTGs------TlvN~Ti~ 79 (147)
T PF04016_consen 9 GPGDKVGMVGYF---QPLVEKLKERGAEVRVFDLNPDNIGEEPGDVPDEDAEEILPWADVVIITGS------TLVNGTID 79 (147)
T ss_dssp TTTSEEEEES-----HCCHHHHCCCCSEEEEEESSGGG--SSCT-EEGGGHHHHGGG-SEEEEECH------HCCTTTHH
T ss_pred cCCCEEEEEcCc---HHHHHHHhcCCCCEEEEECCCCCCCCCCCcCCHHHHHHHHccCCEEEEEee------eeecCCHH
Confidence 368999999961 237888888899999999875322111122333467899999999988431 2344 4
Q ss_pred HHHhcCCCCcEEEEcCC
Q 006864 304 ETFAKMKKGVRIVNVAR 320 (628)
Q Consensus 304 ~~l~~mk~gailIN~aR 320 (628)
..|+..+++..++=.+-
T Consensus 80 ~iL~~~~~~~~vil~Gp 96 (147)
T PF04016_consen 80 DILELARNAREVILYGP 96 (147)
T ss_dssp HHHHHTTTSSEEEEESC
T ss_pred HHHHhCccCCeEEEEec
Confidence 56777777777766654
|
; PDB: 3L5O_B 3NPG_A. |
| >PRK07877 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=91.79 E-value=0.24 Score=58.60 Aligned_cols=96 Identities=17% Similarity=0.187 Sum_probs=64.1
Q ss_pred eecCCeEEEEecChhHHHHHHHHHcCCC--EEEEECCCC------Chh----------H---H----HHc--CCc-----
Q 006864 226 SLVGKTLAVMGFGKVGSEVARRAKGLGM--NVIAHDPYA------PAD----------K---A----RAV--GVE----- 273 (628)
Q Consensus 226 ~l~GktiGIIGlG~IG~~vA~~l~~~G~--~V~~~d~~~------~~~----------~---a----~~~--g~~----- 273 (628)
.|++++|+|+|+| +|+.+|..|...|. ++..+|... +.. + + .+. .++
T Consensus 104 ~L~~~~V~IvG~G-lGs~~a~~LaraGvvG~l~lvD~D~ve~sNLnRq~~~~~diG~~Kv~~a~~~l~~inp~i~v~~~~ 182 (722)
T PRK07877 104 RLGRLRIGVVGLS-VGHAIAHTLAAEGLCGELRLADFDTLELSNLNRVPAGVFDLGVNKAVVAARRIAELDPYLPVEVFT 182 (722)
T ss_pred HHhcCCEEEEEec-HHHHHHHHHHHccCCCeEEEEcCCEEcccccccccCChhhcccHHHHHHHHHHHHHCCCCEEEEEe
Confidence 5889999999999 89999999998774 777776421 000 0 0 111 111
Q ss_pred -c---cCHHHHhccCCEEEEcCCCCccccccccHHHHhcCCCCcEEEEcCCCchhc
Q 006864 274 -L---VSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVID 325 (628)
Q Consensus 274 -~---~sl~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~~vd 325 (628)
. -++++++..+|+|+-|+- +-+++.++|+...++-+| +|.-.+-++.+|
T Consensus 183 ~~i~~~n~~~~l~~~DlVvD~~D-~~~~R~~ln~~a~~~~iP--~i~~~~~~g~~~ 235 (722)
T PRK07877 183 DGLTEDNVDAFLDGLDVVVEECD-SLDVKVLLREAARARRIP--VLMATSDRGLLD 235 (722)
T ss_pred ccCCHHHHHHHhcCCCEEEECCC-CHHHHHHHHHHHHHcCCC--EEEEcCCCCCcC
Confidence 1 147788999999988887 557899998877765333 444444445444
|
|
| >cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein) | Back alignment and domain information |
|---|
Probab=91.76 E-value=0.63 Score=39.26 Aligned_cols=60 Identities=12% Similarity=0.174 Sum_probs=44.0
Q ss_pred EEEeccCCCCchhhHHhhhhcCCccccceEEeeeecCccEEEEEEeCC---CC-CHHHHHHHhc
Q 006864 561 ILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDE---EP-NQDSLKEIGK 620 (628)
Q Consensus 561 Llv~~~D~PGvIa~V~~iL~~~~INIa~m~v~R~~~gg~Al~~i~vD~---~~-~~~~l~~L~~ 620 (628)
+=+...|+||.+..|+..|.+.|++|.+.++.-...|+.+.=++-+|. ++ +++-+++|++
T Consensus 3 lev~a~DRpGLL~~i~~~l~~~~l~i~~AkI~~~T~Gerv~D~Fyv~~~g~kl~d~~~~~~L~~ 66 (75)
T cd04896 3 LQIRCVDQKGLLYDILRTSKDCNIQISYGRFSSKVKGYREVDLFIVQSDGKKIMDPKKQAALCA 66 (75)
T ss_pred EEEEeCCcccHHHHHHHHHHHCCeEEEEEEEecCcccCEEEEEEEEeCCCCccCCHHHHHHHHH
Confidence 345679999999999999999999999999974456667755555533 33 3455555543
|
This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains. |
| >KOG2663 consensus Acetolactate synthase, small subunit [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=91.74 E-value=0.15 Score=52.09 Aligned_cols=71 Identities=17% Similarity=0.317 Sum_probs=50.2
Q ss_pred CCcEEEEeccCCCCchhhHHhhhhcCCccccceEEeeeecCccEEEEEEeC--CCCCHHHHHHHhcccCcccc
Q 006864 557 EGNLILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVD--EEPNQDSLKEIGKVHFVARI 627 (628)
Q Consensus 557 ~~~~Llv~~~D~PGvIa~V~~iL~~~~INIa~m~v~R~~~gg~Al~~i~vD--~~~~~~~l~~L~~l~~v~~v 627 (628)
..|++=|...|.||+|.+|+.+|+..|.||..+.|.-.+.....-|.|-+- +.+-+.+.++|+++-+|+.|
T Consensus 76 krHvinclVqnEpGvlsRisGvlAaRGfNIdSLvVc~tevk~LsrmTIVl~Gtd~VveQa~rQiedlVnV~aV 148 (309)
T KOG2663|consen 76 KRHVINCLVQNEPGVLSRISGVLAARGFNIDSLVVCLTEVKALSRMTIVLQGTDGVVEQARRQIEDLVNVYAV 148 (309)
T ss_pred cceeEEEEecCCchHHHHHHHHHHhccCCchheeeechhhhhhhhceEEEeccHHHHHHHHHHHHHhhhhhee
Confidence 468888889999999999999999999999999998765433332233222 23344566667766655543
|
|
| >PRK14805 ornithine carbamoyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=91.74 E-value=3 Score=44.44 Aligned_cols=65 Identities=25% Similarity=0.247 Sum_probs=46.8
Q ss_pred eecCCeEEEEecC-hhHHHHHHHHHcCCCEEEEECCCC--Chh--------HHHHcCCcc--c-CHHHHhccCCEEEEcC
Q 006864 226 SLVGKTLAVMGFG-KVGSEVARRAKGLGMNVIAHDPYA--PAD--------KARAVGVEL--V-SFDQALATADFISLHM 291 (628)
Q Consensus 226 ~l~GktiGIIGlG-~IG~~vA~~l~~~G~~V~~~d~~~--~~~--------~a~~~g~~~--~-sl~ell~~aDvV~l~~ 291 (628)
.+.|++|+++|-+ ++..+.+..+..||++|....|.. +.. .++..|... . ++ +.++.||+|..-.
T Consensus 144 ~l~g~kva~vGD~~~v~~S~~~~~~~~g~~v~~~~P~~~~~~~~~~~~a~~~~~~~g~~~~~~~d~-~a~~~aDvvy~~~ 222 (302)
T PRK14805 144 DVSKVKLAYVGDGNNVTHSLMYGAAILGATMTVICPPGHFPDGQIVAEAQELAAKSGGKLVLTSDI-EAIEGHDAIYTDT 222 (302)
T ss_pred CcCCcEEEEEcCCCccHHHHHHHHHHcCCEEEEECCchhcCCHHHHHHHHHHHHHcCCEEEEEcCH-HHHCCCCEEEeec
Confidence 3789999999984 667888899999999999988753 211 123345542 2 54 5789999998833
|
|
| >COG3288 PntA NAD/NADP transhydrogenase alpha subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=91.72 E-value=0.33 Score=51.24 Aligned_cols=95 Identities=25% Similarity=0.370 Sum_probs=69.9
Q ss_pred eeeecCCeEEEEecChhHHHHHHHHHcCCCEEEEECCCC-ChhHHHHcCCcc---------------cC----------H
Q 006864 224 GVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA-PADKARAVGVEL---------------VS----------F 277 (628)
Q Consensus 224 g~~l~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~g~~~---------------~s----------l 277 (628)
+-...+.++-++|+|-+|-..+...+..|+-|..+|-.. ..++-+++|.++ .+ +
T Consensus 159 agtv~pA~vlv~G~Gvagl~aiata~~lG~iVt~rdlrm~~Keqv~s~Ga~f~~~~~ee~~gGYAk~ms~~~~~~q~~~~ 238 (356)
T COG3288 159 AGTVSPAKVLVIGAGVAGLAAIATAVRLGAIVTARDLRMFKKEQVESLGAKFLAVEDEESAGGYAKEMSEEFIAKQAELV 238 (356)
T ss_pred cccccchhhhhhhHHHHHHHHHHHHhhcceEEehhhhhhHHhhhhhhcccccccccccccCCCccccCCHHHHHHHHHHH
Confidence 445677888999999999999999999999999998543 122222232211 11 4
Q ss_pred HHHhccCCEEEEc--CCCCccccccccHHHHhcCCCCcEEEEcC
Q 006864 278 DQALATADFISLH--MPLNPTTSKIFNDETFAKMKKGVRIVNVA 319 (628)
Q Consensus 278 ~ell~~aDvV~l~--~Plt~~t~~li~~~~l~~mk~gailIN~a 319 (628)
.+..++.|+|+.. +|..+. -.++.++-.+.||||+++||.+
T Consensus 239 a~~~~~~DivITTAlIPGrpA-P~Lvt~~mv~sMkpGSViVDlA 281 (356)
T COG3288 239 AEQAKEVDIVITTALIPGRPA-PKLVTAEMVASMKPGSVIVDLA 281 (356)
T ss_pred HHHhcCCCEEEEecccCCCCC-chhhHHHHHHhcCCCcEEEEeh
Confidence 5678899999874 455553 4578899999999999999985
|
|
| >cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) | Back alignment and domain information |
|---|
Probab=91.60 E-value=0.41 Score=40.94 Aligned_cols=59 Identities=15% Similarity=0.280 Sum_probs=40.9
Q ss_pred EEEeccCCCCchhhHHhhhhcCCccccceEEeeee-cCccEEEEEEeCC--CCCHHHHHHHhcc
Q 006864 561 ILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTF-RRNHGIMAIGVDE--EPNQDSLKEIGKV 621 (628)
Q Consensus 561 Llv~~~D~PGvIa~V~~iL~~~~INIa~m~v~R~~-~gg~Al~~i~vD~--~~~~~~l~~L~~l 621 (628)
+.+.-+|+||.++++.++|+. .||..+...|.. ..+...+.+++++ +--+++++.|++.
T Consensus 4 l~v~ipD~PG~L~~ll~~l~~--anI~~~~y~~~~~~~~~v~i~ie~~~~~~~~~~i~~~L~~~ 65 (85)
T cd04906 4 LAVTIPERPGSFKKFCELIGP--RNITEFNYRYADEKDAHIFVGVSVANGAEELAELLEDLKSA 65 (85)
T ss_pred EEEecCCCCcHHHHHHHHhCC--CceeEEEEEccCCCeeEEEEEEEeCCcHHHHHHHHHHHHHC
Confidence 556789999999999999994 455566665533 3445566677766 3344777777663
|
This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains. |
| >PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA | Back alignment and domain information |
|---|
Probab=91.59 E-value=0.23 Score=49.90 Aligned_cols=63 Identities=30% Similarity=0.356 Sum_probs=48.5
Q ss_pred EEEEec-ChhHHHHHHHHHcCCCEEEEECCCCChh---HHHHcCCccc--------CHHHHhccCCEEEEcCCCC
Q 006864 232 LAVMGF-GKVGSEVARRAKGLGMNVIAHDPYAPAD---KARAVGVELV--------SFDQALATADFISLHMPLN 294 (628)
Q Consensus 232 iGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~~~~---~a~~~g~~~~--------sl~ell~~aDvV~l~~Plt 294 (628)
|.|+|. |.+|+.+++.|...+++|.+.-+..+.. .....|++.+ +|.+.++.+|.|++++|..
T Consensus 1 I~V~GatG~~G~~v~~~L~~~~~~V~~l~R~~~~~~~~~l~~~g~~vv~~d~~~~~~l~~al~g~d~v~~~~~~~ 75 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSAGFSVRALVRDPSSDRAQQLQALGAEVVEADYDDPESLVAALKGVDAVFSVTPPS 75 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTGCEEEEESSSHHHHHHHHHHTTTEEEES-TT-HHHHHHHHTTCSEEEEESSCS
T ss_pred CEEECCccHHHHHHHHHHHhCCCCcEEEEeccchhhhhhhhcccceEeecccCCHHHHHHHHcCCceEEeecCcc
Confidence 578885 9999999999999999998876654332 2345676532 4778899999999999955
|
NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B .... |
| >PRK08223 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=91.48 E-value=0.34 Score=51.15 Aligned_cols=37 Identities=24% Similarity=0.278 Sum_probs=32.1
Q ss_pred eeecCCeEEEEecChhHHHHHHHHHcCCC-EEEEECCC
Q 006864 225 VSLVGKTLAVMGFGKVGSEVARRAKGLGM-NVIAHDPY 261 (628)
Q Consensus 225 ~~l~GktiGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~ 261 (628)
..|++++|.|||+|.+|..+|+.|...|. ++..+|..
T Consensus 23 ~kL~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D 60 (287)
T PRK08223 23 QRLRNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFD 60 (287)
T ss_pred HHHhcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCC
Confidence 35899999999999999999999999886 67777754
|
|
| >PRK10206 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=91.39 E-value=0.41 Score=51.67 Aligned_cols=64 Identities=16% Similarity=0.224 Sum_probs=42.3
Q ss_pred eEEEEecChhHHH-HHHHHHc--CCCEEEE-ECCCCCh-hHHHHcC-Ccc-cCHHHHhc--cCCEEEEcCCCC
Q 006864 231 TLAVMGFGKVGSE-VARRAKG--LGMNVIA-HDPYAPA-DKARAVG-VEL-VSFDQALA--TADFISLHMPLN 294 (628)
Q Consensus 231 tiGIIGlG~IG~~-vA~~l~~--~G~~V~~-~d~~~~~-~~a~~~g-~~~-~sl~ell~--~aDvV~l~~Plt 294 (628)
++||||+|.|++. .+..++. -++++.+ +|+.... +.+...+ +.. .+++++++ +.|+|++++|..
T Consensus 3 rvgiiG~G~~~~~~h~~~~~~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~ell~~~~iD~V~I~tp~~ 75 (344)
T PRK10206 3 NCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPEEQAPIYSHIHFTSDLDEVLNDPDVKLVVVCTHAD 75 (344)
T ss_pred EEEEECCCHHHhheehhhHhcCCCCEEEEEEEcCChhHHHHHHhcCCCcccCCHHHHhcCCCCCEEEEeCCch
Confidence 6999999998864 3444433 2578765 7876422 2233344 333 37999996 579999999933
|
|
| >PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional | Back alignment and domain information |
|---|
Probab=91.36 E-value=0.33 Score=57.49 Aligned_cols=68 Identities=15% Similarity=0.196 Sum_probs=52.9
Q ss_pred EEEEeccCCCCchhhHHhhhhcCCccccceEEeeeecCccEEEEEEe--CCCC-CHHHHHHHhcccCcccc
Q 006864 560 LILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGV--DEEP-NQDSLKEIGKVHFVARI 627 (628)
Q Consensus 560 ~Llv~~~D~PGvIa~V~~iL~~~~INIa~m~v~R~~~gg~Al~~i~v--D~~~-~~~~l~~L~~l~~v~~v 627 (628)
.|.+...|++|+++.|++++++.++||..+++....+++.+.+.+.+ .+.. =..++.+|+++++|.+|
T Consensus 668 ~I~I~~~Dr~GlL~dIt~~is~~~~nI~~v~~~~~~~~~~~~~~~~ieV~~~~~L~~l~~~L~~i~~V~~v 738 (743)
T PRK10872 668 VVRVTANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIEIYNLQVLGRVLGKLNQVPDVIDA 738 (743)
T ss_pred EEEEEEcCCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCCEEEEEEEEEECCHHHHHHHHHHHhcCCCcCeE
Confidence 44567899999999999999999999999998654446676666554 3321 22789999999999876
|
|
| >cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity | Back alignment and domain information |
|---|
Probab=91.23 E-value=0.56 Score=50.01 Aligned_cols=63 Identities=19% Similarity=0.281 Sum_probs=43.6
Q ss_pred CeEEEEec-ChhHHHHHHHHHcCCC--EEEEECCCC--ChhHH------H---HcCC--cc--c-CHHHHhccCCEEEEc
Q 006864 230 KTLAVMGF-GKVGSEVARRAKGLGM--NVIAHDPYA--PADKA------R---AVGV--EL--V-SFDQALATADFISLH 290 (628)
Q Consensus 230 ktiGIIGl-G~IG~~vA~~l~~~G~--~V~~~d~~~--~~~~a------~---~~g~--~~--~-sl~ell~~aDvV~l~ 290 (628)
++|+|+|. |.+|..+|..|...|. +|+.+|+.. ..... . ..+. .. . +. +.+++||+|+++
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~~~~~~l~~~~~dl~d~~~~~~~~~~i~~~~d~-~~l~~aDiViit 79 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISRPKSLEKLKGLRLDIYDALAAAGIDAEIKISSDL-SDVAGSDIVIIT 79 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEECcccccccccccchhhhchhccCCCcEEEECCCH-HHhCCCCEEEEe
Confidence 58999998 9999999999988775 599999743 11100 0 1111 11 1 44 459999999999
Q ss_pred CCC
Q 006864 291 MPL 293 (628)
Q Consensus 291 ~Pl 293 (628)
...
T Consensus 80 ag~ 82 (309)
T cd05294 80 AGV 82 (309)
T ss_pred cCC
Confidence 864
|
The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox |
| >CHL00194 ycf39 Ycf39; Provisional | Back alignment and domain information |
|---|
Probab=91.23 E-value=0.49 Score=50.05 Aligned_cols=62 Identities=23% Similarity=0.253 Sum_probs=44.9
Q ss_pred CeEEEEe-cChhHHHHHHHHHcCCCEEEEECCCCChh-HHHHcCCccc--------CHHHHhccCCEEEEcC
Q 006864 230 KTLAVMG-FGKVGSEVARRAKGLGMNVIAHDPYAPAD-KARAVGVELV--------SFDQALATADFISLHM 291 (628)
Q Consensus 230 ktiGIIG-lG~IG~~vA~~l~~~G~~V~~~d~~~~~~-~a~~~g~~~~--------sl~ell~~aDvV~l~~ 291 (628)
++|.|.| .|.||+.+++.|...|++|.+.++..... .....+++.+ ++.++++.+|+|+.+.
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~~~~~~~l~~~~v~~v~~Dl~d~~~l~~al~g~d~Vi~~~ 72 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDEGYQVRCLVRNLRKASFLKEWGAELVYGDLSLPETLPPSFKGVTAIIDAS 72 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCeEEEEEcChHHhhhHhhcCCEEEECCCCCHHHHHHHHCCCCEEEECC
Confidence 4788998 69999999999999999999988764221 1122344322 3677889999987654
|
|
| >COG0078 ArgF Ornithine carbamoyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=91.22 E-value=3.3 Score=43.87 Aligned_cols=92 Identities=26% Similarity=0.356 Sum_probs=66.3
Q ss_pred ecCCeEEEEecC-hhHHHHHHHHHcCCCEEEEECCCC--C-h---hH----HHHcC--Cccc-CHHHHhccCCEEEEcCC
Q 006864 227 LVGKTLAVMGFG-KVGSEVARRAKGLGMNVIAHDPYA--P-A---DK----ARAVG--VELV-SFDQALATADFISLHMP 292 (628)
Q Consensus 227 l~GktiGIIGlG-~IG~~vA~~l~~~G~~V~~~d~~~--~-~---~~----a~~~g--~~~~-sl~ell~~aDvV~l~~P 292 (628)
++|+|+..+|=| +++.++...+..+||+|...-|.. + . +. +++.| +..+ +.++.++.||+|..-+.
T Consensus 151 l~g~k~a~vGDgNNv~nSl~~~~a~~G~dv~ia~Pk~~~p~~~~~~~a~~~a~~~g~~i~~t~d~~eAv~gADvvyTDvW 230 (310)
T COG0078 151 LKGLKLAYVGDGNNVANSLLLAAAKLGMDVRIATPKGYEPDPEVVEKAKENAKESGGKITLTEDPEEAVKGADVVYTDVW 230 (310)
T ss_pred ccCcEEEEEcCcchHHHHHHHHHHHhCCeEEEECCCcCCcCHHHHHHHHHHHHhcCCeEEEecCHHHHhCCCCEEEecCc
Confidence 999999999876 688888888899999999876642 1 1 11 23334 3333 89999999999987665
Q ss_pred CC--cccc-----------ccccHHHHhcCCCCcEEEEc
Q 006864 293 LN--PTTS-----------KIFNDETFAKMKKGVRIVNV 318 (628)
Q Consensus 293 lt--~~t~-----------~li~~~~l~~mk~gailIN~ 318 (628)
.. ++.+ ..+|.+.++.-++++++.-|
T Consensus 231 vSMGee~e~~~~~~~~~~~yQVn~~lm~~a~~~~ifmHC 269 (310)
T COG0078 231 VSMGEEAEAEERRIAFLPPYQVNEELMALAGPDAIFMHC 269 (310)
T ss_pred ccCcchhhhHHHHHhhCCCceeCHHHHhhcCCCeEEEeC
Confidence 32 2222 45677777777777777777
|
|
| >PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional | Back alignment and domain information |
|---|
Probab=91.08 E-value=0.21 Score=49.55 Aligned_cols=42 Identities=14% Similarity=0.188 Sum_probs=32.5
Q ss_pred EeccCCCCchhhHHhhhhcCCccccceEEeeeecCccEEEEE
Q 006864 563 CRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAI 604 (628)
Q Consensus 563 v~~~D~PGvIa~V~~iL~~~~INIa~m~v~R~~~gg~Al~~i 604 (628)
+.-+|+||+++.|+..|+++|+||.+.+..+-...-..+|.+
T Consensus 13 viG~DrpGIVa~vs~~l~~~g~NI~ds~~t~lgg~Fa~i~lv 54 (190)
T PRK11589 13 ALGADRPGIVNTITRHVSSCGCNIEDSRLAMLGEEFTFIMLL 54 (190)
T ss_pred EEcCCCChHHHHHHHHHHHcCCCeeehhhHhhCCceEEEEEE
Confidence 345999999999999999999999999887643322334444
|
|
| >PLN02178 cinnamyl-alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=91.05 E-value=0.82 Score=49.85 Aligned_cols=35 Identities=29% Similarity=0.475 Sum_probs=31.8
Q ss_pred cCCeEEEEecChhHHHHHHHHHcCCCEEEEECCCC
Q 006864 228 VGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA 262 (628)
Q Consensus 228 ~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~ 262 (628)
.|.++.|.|.|.+|...++.++.+|.+|++.++..
T Consensus 178 ~g~~VlV~G~G~vG~~avq~Ak~~Ga~Vi~~~~~~ 212 (375)
T PLN02178 178 SGKRLGVNGLGGLGHIAVKIGKAFGLRVTVISRSS 212 (375)
T ss_pred CCCEEEEEcccHHHHHHHHHHHHcCCeEEEEeCCh
Confidence 58899999999999999999999999999987653
|
|
| >cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like | Back alignment and domain information |
|---|
Probab=90.93 E-value=0.71 Score=48.89 Aligned_cols=34 Identities=38% Similarity=0.520 Sum_probs=31.3
Q ss_pred CCeEEEEecChhHHHHHHHHHcCCCE-EEEECCCC
Q 006864 229 GKTLAVMGFGKVGSEVARRAKGLGMN-VIAHDPYA 262 (628)
Q Consensus 229 GktiGIIGlG~IG~~vA~~l~~~G~~-V~~~d~~~ 262 (628)
|.++.|+|.|.+|...++.++.+|.+ |++.++..
T Consensus 164 g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~ 198 (339)
T cd08239 164 RDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSP 198 (339)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCH
Confidence 89999999999999999999999998 99988754
|
MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at |
| >cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD) | Back alignment and domain information |
|---|
Probab=90.93 E-value=0.95 Score=48.04 Aligned_cols=45 Identities=31% Similarity=0.474 Sum_probs=35.3
Q ss_pred cCCeEEEEecChhHHHHHHHHHcCCCEEEEECCCC-ChhHHHHcCC
Q 006864 228 VGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA-PADKARAVGV 272 (628)
Q Consensus 228 ~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~g~ 272 (628)
.|.++.|.|.|.+|+.+++.++++|++|++.++.. ..+.+.++|+
T Consensus 169 ~g~~vlV~g~g~vG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~g~ 214 (337)
T cd05283 169 PGKRVGVVGIGGLGHLAVKFAKALGAEVTAFSRSPSKKEDALKLGA 214 (337)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHcCC
Confidence 46799999999999999999999999999988764 2233344443
|
Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic |
| >PRK15076 alpha-galactosidase; Provisional | Back alignment and domain information |
|---|
Probab=90.87 E-value=0.74 Score=51.44 Aligned_cols=112 Identities=13% Similarity=0.103 Sum_probs=69.2
Q ss_pred CeEEEEecChhHHHHHH--HH---HcC-CCEEEEECCCCChhH-H--------HHcCC----c-ccCHHHHhccCCEEEE
Q 006864 230 KTLAVMGFGKVGSEVAR--RA---KGL-GMNVIAHDPYAPADK-A--------RAVGV----E-LVSFDQALATADFISL 289 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~--~l---~~~-G~~V~~~d~~~~~~~-a--------~~~g~----~-~~sl~ell~~aDvV~l 289 (628)
++|+|||.|.+|...+- .+ .++ |.+|..||....... . ...+. . ..++.+.++.||||+.
T Consensus 2 ~KIaIIGaGsvg~~~~~~~~i~~~~~l~~~evvLvDid~er~~~~~~l~~~~~~~~~~~~~i~~ttD~~eal~dADfVv~ 81 (431)
T PRK15076 2 PKITFIGAGSTVFTKNLLGDILSVPALRDAEIALMDIDPERLEESEIVARKLAESLGASAKITATTDRREALQGADYVIN 81 (431)
T ss_pred cEEEEECCCHHHhHHHHHHHHhhCccCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEEEECCHHHHhCCCCEEeE
Confidence 48999999999965544 22 334 459999997642211 1 11221 1 2267899999999999
Q ss_pred cCCCC--c--------------------ccc-------cccc-------HHHHhcCCCCcEEEEcCCCchhcHHHHHHHH
Q 006864 290 HMPLN--P--------------------TTS-------KIFN-------DETFAKMKKGVRIVNVARGGVIDEEALVRAL 333 (628)
Q Consensus 290 ~~Plt--~--------------------~t~-------~li~-------~~~l~~mk~gailIN~aRg~~vde~aL~~aL 333 (628)
++-.. . +|. .+-+ .+.+....|++++||.+..-=+-..++.+ +
T Consensus 82 ti~vg~~~~~~~~De~Iplk~G~~~~r~et~G~GG~~~~~r~i~~i~~i~~~i~~~~p~a~iin~tNP~divt~~~~~-~ 160 (431)
T PRK15076 82 AIQVGGYEPCTVTDFEIPKKYGLRQTIGDTLGIGGIMRALRTIPVLLDICEDMEEVCPDALLLNYVNPMAMNTWAMNR-Y 160 (431)
T ss_pred eeeeCCcchhhhhhhhhHHHcCCeeecccCcCccchhhhhhhHHHHHHHHHHHHHHCCCeEEEEcCChHHHHHHHHhc-C
Confidence 88653 1 110 0111 12344456899999998776566666663 3
Q ss_pred hCCCeeEEE
Q 006864 334 DSGVVAQAA 342 (628)
Q Consensus 334 ~~g~i~ga~ 342 (628)
...++.|.+
T Consensus 161 ~~~rviG~c 169 (431)
T PRK15076 161 PGIKTVGLC 169 (431)
T ss_pred CCCCEEEEC
Confidence 445776764
|
|
| >cd01487 E1_ThiF_like E1_ThiF_like | Back alignment and domain information |
|---|
Probab=90.87 E-value=0.75 Score=44.85 Aligned_cols=31 Identities=26% Similarity=0.317 Sum_probs=27.5
Q ss_pred eEEEEecChhHHHHHHHHHcCCC-EEEEECCC
Q 006864 231 TLAVMGFGKVGSEVARRAKGLGM-NVIAHDPY 261 (628)
Q Consensus 231 tiGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~ 261 (628)
+++|||+|.+|..+|+.|...|. ++..+|..
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D 32 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFD 32 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 58999999999999999998897 58888865
|
Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. |
| >cd05290 LDH_3 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=90.81 E-value=0.46 Score=50.66 Aligned_cols=63 Identities=27% Similarity=0.352 Sum_probs=43.0
Q ss_pred eEEEEecChhHHHHHHHHHcCCC--EEEEECCCCChhHHHHcC------------Ccc-cCHHHHhccCCEEEEcCCC
Q 006864 231 TLAVMGFGKVGSEVARRAKGLGM--NVIAHDPYAPADKARAVG------------VEL-VSFDQALATADFISLHMPL 293 (628)
Q Consensus 231 tiGIIGlG~IG~~vA~~l~~~G~--~V~~~d~~~~~~~a~~~g------------~~~-~sl~ell~~aDvV~l~~Pl 293 (628)
+|+|||.|.||..+|..|...|. ++..+|..........+. +.. ..-.+.+++||+|+++.-.
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~~~~~~~~~~~i~~~~y~~~~~aDivvitaG~ 78 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHATALTYSTNTKIRAGDYDDCADADIIVITAGP 78 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhhhccCCCCCEEEEECCHHHhCCCCEEEECCCC
Confidence 58999999999999998875554 799999764322211111 111 1224788999999997653
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=90.80 E-value=0.76 Score=49.20 Aligned_cols=35 Identities=34% Similarity=0.499 Sum_probs=31.7
Q ss_pred cCCeEEEEecChhHHHHHHHHHcCCCEEEEECCCC
Q 006864 228 VGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA 262 (628)
Q Consensus 228 ~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~ 262 (628)
.|.++.|+|.|.||...++.++.+|.+|++.++..
T Consensus 166 ~g~~VlV~G~G~vG~~a~~~a~~~G~~vi~~~~~~ 200 (349)
T TIGR03201 166 KGDLVIVIGAGGVGGYMVQTAKAMGAAVVAIDIDP 200 (349)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCH
Confidence 47899999999999999999999999999988754
|
Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA. |
| >TIGR01761 thiaz-red thiazolinyl imide reductase | Back alignment and domain information |
|---|
Probab=90.79 E-value=0.62 Score=50.49 Aligned_cols=63 Identities=11% Similarity=0.119 Sum_probs=48.9
Q ss_pred CeEEEEecChhHHHHHHHHHcC--CCEEEE-ECCCCC--hhHHHHcCCc-ccCHHHHhccCCEEEEcCCC
Q 006864 230 KTLAVMGFGKVGSEVARRAKGL--GMNVIA-HDPYAP--ADKARAVGVE-LVSFDQALATADFISLHMPL 293 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~--G~~V~~-~d~~~~--~~~a~~~g~~-~~sl~ell~~aDvV~l~~Pl 293 (628)
.++||||. .+|+.-++.++.. +.++.+ +|+... .+.+++.|+. +.++++++++.|++++++|.
T Consensus 4 ~rVgViG~-~~G~~h~~al~~~~~~~eLvaV~d~~~erA~~~A~~~gi~~y~~~eell~d~Di~~V~ipt 72 (343)
T TIGR01761 4 QSVVVCGT-RFGQFYLAAFAAAPERFELAGILAQGSERSRALAHRLGVPLYCEVEELPDDIDIACVVVRS 72 (343)
T ss_pred cEEEEEeH-HHHHHHHHHHHhCCCCcEEEEEEcCCHHHHHHHHHHhCCCccCCHHHHhcCCCEEEEEeCC
Confidence 58999999 6899999888865 477766 677642 2345666775 45899999999999999984
|
This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG). |
| >PRK12550 shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=90.78 E-value=0.7 Score=48.46 Aligned_cols=64 Identities=19% Similarity=0.177 Sum_probs=44.0
Q ss_pred CCeEEEEecChhHHHHHHHHHcCCC-EEEEECCCCChh--HHHHcCCcccCHHHH-hccCCEEEEcCCCC
Q 006864 229 GKTLAVMGFGKVGSEVARRAKGLGM-NVIAHDPYAPAD--KARAVGVELVSFDQA-LATADFISLHMPLN 294 (628)
Q Consensus 229 GktiGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~~~~--~a~~~g~~~~sl~el-l~~aDvV~l~~Plt 294 (628)
++++.|+|.|..+++++..|+..|. +|.+++|..... .+...++... +++ ...+|+|+.++|+-
T Consensus 122 ~~~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~~a~~la~~~~~~~~--~~~~~~~~dlvINaTp~G 189 (272)
T PRK12550 122 DLVVALRGSGGMAKAVAAALRDAGFTDGTIVARNEKTGKALAELYGYEWR--PDLGGIEADILVNVTPIG 189 (272)
T ss_pred CCeEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhCCcch--hhcccccCCEEEECCccc
Confidence 4689999999999999999999997 599999875221 1222222211 111 24578888888843
|
|
| >PLN00106 malate dehydrogenase | Back alignment and domain information |
|---|
Probab=90.45 E-value=0.56 Score=50.38 Aligned_cols=64 Identities=23% Similarity=0.203 Sum_probs=44.8
Q ss_pred CCeEEEEec-ChhHHHHHHHHHcCC--CEEEEECCCCChhHHHHc-------CCc----ccCHHHHhccCCEEEEcCC
Q 006864 229 GKTLAVMGF-GKVGSEVARRAKGLG--MNVIAHDPYAPADKARAV-------GVE----LVSFDQALATADFISLHMP 292 (628)
Q Consensus 229 GktiGIIGl-G~IG~~vA~~l~~~G--~~V~~~d~~~~~~~a~~~-------g~~----~~sl~ell~~aDvV~l~~P 292 (628)
.++|+|||. |+||..+|..|...+ -++..+|.......+.++ .+. ..++.+.++.||+|+++.-
T Consensus 18 ~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~~~g~a~Dl~~~~~~~~i~~~~~~~d~~~~l~~aDiVVitAG 95 (323)
T PLN00106 18 GFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIANTPGVAADVSHINTPAQVRGFLGDDQLGDALKGADLVIIPAG 95 (323)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCCCCeeEchhhhCCcCceEEEEeCCCCHHHHcCCCCEEEEeCC
Confidence 469999999 999999999998544 489999975521111111 111 1235789999999998764
|
|
| >PRK13529 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.42 E-value=9.9 Score=43.74 Aligned_cols=194 Identities=15% Similarity=0.150 Sum_probs=119.2
Q ss_pred CcceeEEecccccCc-ccHhHHHhcCceEEcCCCCChhhHHHHHHHHHHHHHHchhHHHHHHHcCcccccccceeeecCC
Q 006864 152 GKLKVVGRAGVGIDN-VDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGK 230 (628)
Q Consensus 152 ~~Lk~I~~~g~G~D~-iDl~aa~~~GI~V~n~p~~~~~avAE~~l~l~L~~~R~i~~~~~~~~~g~W~~~~~~g~~l~Gk 230 (628)
|+. +|+.-=-+..| +.+..--+..|.+.|+-- .-+|--+++-+|+..| ..|..|...
T Consensus 239 P~~-~I~~EDf~~~~af~iL~ryr~~i~~FnDDi---QGTaaV~LAgll~A~r------------------~~g~~l~d~ 296 (563)
T PRK13529 239 PNA-LLQFEDFAQKNARRILERYRDEICTFNDDI---QGTGAVTLAGLLAALK------------------ITGEPLSDQ 296 (563)
T ss_pred CCe-EEehhhcCCchHHHHHHHhccCCCeecccc---chHHHHHHHHHHHHHH------------------HhCCChhhc
Confidence 344 55544344333 444444556789988753 3344456777777777 246678889
Q ss_pred eEEEEecChhHHHHHHHHHc----CCC-------EEEEECCCC--C-------h---hHHHHcC-C-------cccCHHH
Q 006864 231 TLAVMGFGKVGSEVARRAKG----LGM-------NVIAHDPYA--P-------A---DKARAVG-V-------ELVSFDQ 279 (628)
Q Consensus 231 tiGIIGlG~IG~~vA~~l~~----~G~-------~V~~~d~~~--~-------~---~~a~~~g-~-------~~~sl~e 279 (628)
+|.|+|.|..|-.+|+.+.. .|+ +++.+|..- . . ..++... . ...+|.|
T Consensus 297 riv~~GAGsAgiGia~ll~~~~~~~Gl~~eeA~~~i~~vD~~GLl~~~r~~l~~~k~~fa~~~~~~~~~~~~~~~~~L~e 376 (563)
T PRK13529 297 RIVFLGAGSAGCGIADQIVAAMVREGLSEEEARKRFFMVDRQGLLTDDMPDLLDFQKPYARKREELADWDTEGDVISLLE 376 (563)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHcCCChhHhcCeEEEEcCCCeEeCCCCcchHHHHHHhhhcccccccccccCCCCHHH
Confidence 99999999999999999875 577 788888641 0 1 0111111 0 1147999
Q ss_pred HhccC--CEEEEcCCCCccccccccHHHHhcCCC---CcEEEEcCCCchh---cHHHHHHHHhCCCeeEEEeeccCCCCC
Q 006864 280 ALATA--DFISLHMPLNPTTSKIFNDETFAKMKK---GVRIVNVARGGVI---DEEALVRALDSGVVAQAALDVFTEEPP 351 (628)
Q Consensus 280 ll~~a--DvV~l~~Plt~~t~~li~~~~l~~mk~---gailIN~aRg~~v---de~aL~~aL~~g~i~ga~lDV~~~EP~ 351 (628)
+++.+ |+++=+- ..-+.|+++.++.|.+ ..+|.=.++...- ..++.+++=+...|.+.|...-..+-.
T Consensus 377 ~v~~~kPtvLIG~S----~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~aE~tpe~a~~~T~Grai~AtGspf~pv~~~ 452 (563)
T PRK13529 377 VVRNVKPTVLIGVS----GQPGAFTEEIVKEMAAHCERPIIFPLSNPTSRAEATPEDLIAWTDGRALVATGSPFAPVEYN 452 (563)
T ss_pred HHhccCCCEEEEec----CCCCCCCHHHHHHHHhcCCCCEEEECCCcCCCcccCHHHHHHhhcCCEEEEECCCCCCeeeC
Confidence 99988 9987532 1247999999999987 8899999887663 333333333333455555432111100
Q ss_pred CCCCccccCCcEEEcCCCCC
Q 006864 352 AKDSKLVQHENVTVTPHLGA 371 (628)
Q Consensus 352 ~~~~~L~~~~nvilTPHig~ 371 (628)
.....-=+..|+++-|=+|-
T Consensus 453 G~~~~p~Q~NN~~iFPGigl 472 (563)
T PRK13529 453 GKTYPIGQCNNAYIFPGLGL 472 (563)
T ss_pred CeEeccCcCcceeecccchh
Confidence 00111124578999998874
|
|
| >PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=90.38 E-value=0.75 Score=51.32 Aligned_cols=105 Identities=16% Similarity=0.247 Sum_probs=67.4
Q ss_pred eEEEEecChhHHHHHHHHHcCCCEEEEECCCCChh------HHHHcCCccc---CH-----HHHhccCCEEEEcCCCCcc
Q 006864 231 TLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPAD------KARAVGVELV---SF-----DQALATADFISLHMPLNPT 296 (628)
Q Consensus 231 tiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~------~a~~~g~~~~---sl-----~ell~~aDvV~l~~Plt~~ 296 (628)
++.|||+|..|.+.|+.|...|++|.++|...... ...+.|+... .. .+.+.+.|+|+..-...++
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~~~~~~~~~~l~~~gi~~~~g~~~~~~~~~~~~~~~d~vv~s~gi~~~ 81 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDSPELLERQQELEQEGITVKLGKPLELESFQPWLDQPDLVVVSPGIPWD 81 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCchhhHHHHHHHHHcCCEEEECCccchhhhhHHhhcCCEEEECCCCCCC
Confidence 58999999999999999999999999999754221 1234465432 12 2467889999874433332
Q ss_pred ccc----------cccHHHH--hcCCC-CcEEEEcCCCchhcHHHHHHHHhC
Q 006864 297 TSK----------IFNDETF--AKMKK-GVRIVNVARGGVIDEEALVRALDS 335 (628)
Q Consensus 297 t~~----------li~~~~l--~~mk~-gailIN~aRg~~vde~aL~~aL~~ 335 (628)
... ++.+-.+ ..+++ ..+-|--+.|+.--..-|...|+.
T Consensus 82 ~~~~~~a~~~~i~v~~~~~~~~~~~~~~~~I~VTGT~GKTTTt~ml~~iL~~ 133 (459)
T PRK02705 82 HPTLVELRERGIEVIGEIELAWRALKHIPWVGITGTNGKTTVTALLAHILQA 133 (459)
T ss_pred CHHHHHHHHcCCcEEEhHHHHHHhhcCCCEEEEeCCCchHHHHHHHHHHHHH
Confidence 111 1232222 23332 345555577888888877777765
|
|
| >PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=90.36 E-value=0.64 Score=46.56 Aligned_cols=37 Identities=32% Similarity=0.452 Sum_probs=33.1
Q ss_pred eecCCeEEEEec-ChhHHHHHHHHHcCCCEEEEECCCC
Q 006864 226 SLVGKTLAVMGF-GKVGSEVARRAKGLGMNVIAHDPYA 262 (628)
Q Consensus 226 ~l~GktiGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~ 262 (628)
++.++++.|+|. |.||+.+++.|...|++|++.++..
T Consensus 2 ~~~~~~vlItGasg~iG~~l~~~l~~~G~~V~~~~r~~ 39 (251)
T PRK07231 2 RLEGKVAIVTGASSGIGEGIARRFAAEGARVVVTDRNE 39 (251)
T ss_pred CcCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCH
Confidence 367899999985 8999999999999999999998875
|
|
| >KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=90.36 E-value=0.35 Score=51.29 Aligned_cols=46 Identities=39% Similarity=0.538 Sum_probs=39.7
Q ss_pred cCCeEEEEecChhHHHHHHHHHcCCC-EEEEECCCC-ChhHHHHcCCc
Q 006864 228 VGKTLAVMGFGKVGSEVARRAKGLGM-NVIAHDPYA-PADKARAVGVE 273 (628)
Q Consensus 228 ~GktiGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~-~~~~a~~~g~~ 273 (628)
.|.|++|+|+|.+|.+++.-++++|. ++++.|-.. ..+.++++|++
T Consensus 192 ~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~fGaT 239 (375)
T KOG0022|consen 192 PGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKEFGAT 239 (375)
T ss_pred CCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHhcCcc
Confidence 58999999999999999999999996 899999876 34567777874
|
|
| >PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed | Back alignment and domain information |
|---|
Probab=90.33 E-value=0.79 Score=53.82 Aligned_cols=35 Identities=26% Similarity=0.282 Sum_probs=32.7
Q ss_pred ecCCeEEEEecChhHHHHHHHHHcCCCEEEEECCC
Q 006864 227 LVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPY 261 (628)
Q Consensus 227 l~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~ 261 (628)
-.|+++.|||.|..|.+.|..|+..|++|++||+.
T Consensus 325 ~~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~ 359 (654)
T PRK12769 325 KSDKRVAIIGAGPAGLACADVLARNGVAVTVYDRH 359 (654)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecC
Confidence 46899999999999999999999999999999864
|
|
| >COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=90.32 E-value=1 Score=48.78 Aligned_cols=39 Identities=33% Similarity=0.353 Sum_probs=32.1
Q ss_pred eEEEEecChhHHHHHHHHHcCCC-EEEEECCCC-ChhHHHH
Q 006864 231 TLAVMGFGKVGSEVARRAKGLGM-NVIAHDPYA-PADKARA 269 (628)
Q Consensus 231 tiGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~-~~~~a~~ 269 (628)
++.|+|.|.||.-.+..++.+|. +|++.|+.. ..+.+++
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~ 211 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKE 211 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHH
Confidence 99999999999999999999995 677888865 3344555
|
|
| >cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase) | Back alignment and domain information |
|---|
Probab=90.32 E-value=0.92 Score=49.04 Aligned_cols=45 Identities=33% Similarity=0.451 Sum_probs=35.8
Q ss_pred cCCeEEEEecChhHHHHHHHHHcCCC-EEEEECCCC-ChhHHHHcCC
Q 006864 228 VGKTLAVMGFGKVGSEVARRAKGLGM-NVIAHDPYA-PADKARAVGV 272 (628)
Q Consensus 228 ~GktiGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~-~~~~a~~~g~ 272 (628)
.|.++.|.|.|.+|...++.++.+|+ +|++.|+.. ..+.++++|+
T Consensus 191 ~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~~Ga 237 (371)
T cd08281 191 PGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARELGA 237 (371)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHcCC
Confidence 47899999999999999999999999 699888764 2234455554
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd |
| >PRK05600 thiamine biosynthesis protein ThiF; Validated | Back alignment and domain information |
|---|
Probab=90.21 E-value=0.35 Score=52.91 Aligned_cols=37 Identities=19% Similarity=0.284 Sum_probs=33.2
Q ss_pred eeecCCeEEEEecChhHHHHHHHHHcCCC-EEEEECCC
Q 006864 225 VSLVGKTLAVMGFGKVGSEVARRAKGLGM-NVIAHDPY 261 (628)
Q Consensus 225 ~~l~GktiGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~ 261 (628)
..|.+++|.|||+|.+|..+++.|...|. ++..+|+.
T Consensus 37 ~~l~~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D 74 (370)
T PRK05600 37 ERLHNARVLVIGAGGLGCPAMQSLASAGVGTITLIDDD 74 (370)
T ss_pred HHhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 46899999999999999999999999996 78888864
|
|
| >cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases | Back alignment and domain information |
|---|
Probab=90.20 E-value=0.51 Score=50.68 Aligned_cols=63 Identities=13% Similarity=0.071 Sum_probs=43.4
Q ss_pred eEEEEec-ChhHHHHHHHHHcCC-------CEEEEECCCCChh--HHHHcC-----------Cc-ccCHHHHhccCCEEE
Q 006864 231 TLAVMGF-GKVGSEVARRAKGLG-------MNVIAHDPYAPAD--KARAVG-----------VE-LVSFDQALATADFIS 288 (628)
Q Consensus 231 tiGIIGl-G~IG~~vA~~l~~~G-------~~V~~~d~~~~~~--~a~~~g-----------~~-~~sl~ell~~aDvV~ 288 (628)
+|+|+|. |.+|+.++..|...+ .++..+|.....+ ....+. +. ..++.+.++.||+|+
T Consensus 4 kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl~d~~~~~~~~~~~~~~~~~~l~~aDiVI 83 (325)
T cd01336 4 RVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGVVMELQDCAFPLLKSVVATTDPEEAFKDVDVAI 83 (325)
T ss_pred EEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCccccccceeeehhhccccccCCceecCCHHHHhCCCCEEE
Confidence 6999999 999999999998644 4899998743211 111111 11 235678899999998
Q ss_pred EcCCC
Q 006864 289 LHMPL 293 (628)
Q Consensus 289 l~~Pl 293 (628)
.+.-.
T Consensus 84 ~tAG~ 88 (325)
T cd01336 84 LVGAM 88 (325)
T ss_pred EeCCc
Confidence 87644
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway | Back alignment and domain information |
|---|
Probab=90.19 E-value=0.44 Score=42.92 Aligned_cols=96 Identities=18% Similarity=0.249 Sum_probs=57.4
Q ss_pred ecChhHHHHHHHHHcC----CCEEEE-ECCC--CChhHHHH--cCCcccCHHHHhc--cCCEEEEcCCCCccccccccHH
Q 006864 236 GFGKVGSEVARRAKGL----GMNVIA-HDPY--APADKARA--VGVELVSFDQALA--TADFISLHMPLNPTTSKIFNDE 304 (628)
Q Consensus 236 GlG~IG~~vA~~l~~~----G~~V~~-~d~~--~~~~~a~~--~g~~~~sl~ell~--~aDvV~l~~Plt~~t~~li~~~ 304 (628)
|+|.||+.+++.++.. +++|.+ +|+. ........ ......++++++. ..|+|+=|.+..+ +.+-
T Consensus 1 G~G~VG~~l~~~l~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvVE~t~~~~-----~~~~ 75 (117)
T PF03447_consen 1 GFGNVGRGLLEQLKEQQERIDLEVVGVADRSMLISKDWAASFPDEAFTTDLEELIDDPDIDVVVECTSSEA-----VAEY 75 (117)
T ss_dssp --SHHHHHHHHHHHHTHHHCEEEEEEEEESSEEEETTHHHHHTHSCEESSHHHHHTHTT-SEEEE-SSCHH-----HHHH
T ss_pred CCCHHHHHHHHHHHhCcccCCEEEEEEEECCchhhhhhhhhcccccccCCHHHHhcCcCCCEEEECCCchH-----HHHH
Confidence 8999999999999865 677765 4665 11112111 1223458999998 9999998865322 1233
Q ss_pred HHhcCCCCcEEEEcCCCchh---cHHHHHHHHhCC
Q 006864 305 TFAKMKKGVRIVNVARGGVI---DEEALVRALDSG 336 (628)
Q Consensus 305 ~l~~mk~gailIN~aRg~~v---de~aL~~aL~~g 336 (628)
....|+.|.-+|-..-+.+. ..+.|.++.+++
T Consensus 76 ~~~~L~~G~~VVt~nk~ala~~~~~~~L~~~A~~~ 110 (117)
T PF03447_consen 76 YEKALERGKHVVTANKGALADEALYEELREAARKN 110 (117)
T ss_dssp HHHHHHTTCEEEES-HHHHHSHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCeEEEECHHHhhhHHHHHHHHHHHHHc
Confidence 44557788888888878877 334444444443
|
Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D .... |
| >PRK06382 threonine dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=90.05 E-value=0.41 Score=52.99 Aligned_cols=68 Identities=15% Similarity=0.174 Sum_probs=50.0
Q ss_pred eecCCcEEEEeccCCCCchhhHHhhhhcCCccccceEEeee---ecCccEEEEEEeCCC--C-CHHHHHHHhcc
Q 006864 554 ASLEGNLILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRT---FRRNHGIMAIGVDEE--P-NQDSLKEIGKV 621 (628)
Q Consensus 554 ~~~~~~~Llv~~~D~PGvIa~V~~iL~~~~INIa~m~v~R~---~~gg~Al~~i~vD~~--~-~~~~l~~L~~l 621 (628)
..+....+.+..+|+||.+.+|+.+++++++||-.+...|. ...+.+...+.++.. . .++++++|++.
T Consensus 326 ~~~~~~rl~v~v~D~pG~L~~l~~ii~~~~~nI~~v~~~~~~~~~~~~~~~v~i~vet~~~~~~~~v~~~L~~~ 399 (406)
T PRK06382 326 NLGQLVRIECNIPDRPGNLYRIANAIASNGGNIYHAEVDNLRKETPPGFQSVTFTVNVRGQDHLDRILNALREM 399 (406)
T ss_pred hcCCEEEEEEEcCCCCCHHHHHHHHHhcCCCcEEEEEEeeccccCCCCcEEEEEEEEeCCHHHHHHHHHHHHHC
Confidence 34445566678899999999999999999999998887642 234566667777663 3 33778887764
|
|
| >PRK05597 molybdopterin biosynthesis protein MoeB; Validated | Back alignment and domain information |
|---|
Probab=89.96 E-value=0.33 Score=52.83 Aligned_cols=37 Identities=30% Similarity=0.392 Sum_probs=32.5
Q ss_pred eeecCCeEEEEecChhHHHHHHHHHcCCC-EEEEECCC
Q 006864 225 VSLVGKTLAVMGFGKVGSEVARRAKGLGM-NVIAHDPY 261 (628)
Q Consensus 225 ~~l~GktiGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~ 261 (628)
..|++++|.|||+|.+|..+|+.|...|. ++..+|..
T Consensus 24 ~~L~~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D 61 (355)
T PRK05597 24 QSLFDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDD 61 (355)
T ss_pred HHHhCCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 45899999999999999999999999886 67777754
|
|
| >PF05222 AlaDh_PNT_N: Alanine dehydrogenase/PNT, N-terminal domain; InterPro: IPR007886 Alanine dehydrogenases (1 | Back alignment and domain information |
|---|
Probab=89.93 E-value=1.8 Score=40.56 Aligned_cols=96 Identities=22% Similarity=0.337 Sum_probs=67.3
Q ss_pred HHHHHHHcCCCEEEEECCC-----CChhHHHHcCCcccC-HHHHhccCCEEEEcCCCCccccccccHHHHhcCCCCcEEE
Q 006864 243 EVARRAKGLGMNVIAHDPY-----APADKARAVGVELVS-FDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIV 316 (628)
Q Consensus 243 ~vA~~l~~~G~~V~~~d~~-----~~~~~a~~~g~~~~s-l~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailI 316 (628)
..+++|...|++|++=.-. .+.+...+.|+..++ -++++++||+|+-.=|.+ .+.+++|++|.++|
T Consensus 18 ~~v~~L~~~G~~V~VE~gaG~~a~fsD~~Y~~aGA~I~~~~~ev~~~adiIl~v~~p~--------~~e~~~l~~g~~li 89 (136)
T PF05222_consen 18 EDVKKLVKLGHEVLVESGAGEGAGFSDEEYEEAGAEIVSRAEEVYSDADIILKVKPPS--------EEELALLKPGQTLI 89 (136)
T ss_dssp HHHHHHHHTTSEEEEETTTTGGGTB-HHHHHHTTEEEESSHHHHHTTSSEEEESS-----------GGGGGGS-TTCEEE
T ss_pred HHHHHHHhCCCEEEEECCCCCcCcccHHHHhhCCcEEecCchhhcccCCEEEEECCCC--------HHHHhhcCCCcEEE
Confidence 4677888889999985432 244556677888775 559999999998765543 56778899999999
Q ss_pred EcCCCchhcHHHHHHHHhCCCeeEEEeeccCC
Q 006864 317 NVARGGVIDEEALVRALDSGVVAQAALDVFTE 348 (628)
Q Consensus 317 N~aRg~~vde~aL~~aL~~g~i~ga~lDV~~~ 348 (628)
-..... ....+++.|.+.++...++|....
T Consensus 90 ~~~~~~--~~~~~~~~l~~~~it~~a~E~ipr 119 (136)
T PF05222_consen 90 GFLHPA--QNKELLEALAKKGITAFALELIPR 119 (136)
T ss_dssp EE--GG--GHHHHHHHHHHCTEEEEEGGGSBS
T ss_pred Eeeccc--cCHHHHHHHHHCCCEEEEhhhCcC
Confidence 876544 577788888888887777776543
|
4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins, represented in this entry, and to a central glycine-rich region which is part of the NAD(H)-binding site.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1X15_A 2BRU_A 1X14_B 1X13_A 2EEZ_F 2VOE_F 2VHV_B 2VHY_A 2VHX_A 2VHW_A .... |
| >PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases | Back alignment and domain information |
|---|
Probab=89.92 E-value=0.23 Score=43.40 Aligned_cols=61 Identities=18% Similarity=0.343 Sum_probs=40.4
Q ss_pred CeEEEEecChhHHHHHHHHH-cCCCEEE-EE--CCCCChhHHHHcCCccc-CHHHHhcc--CCEEEEcCC
Q 006864 230 KTLAVMGFGKVGSEVARRAK-GLGMNVI-AH--DPYAPADKARAVGVELV-SFDQALAT--ADFISLHMP 292 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~-~~G~~V~-~~--d~~~~~~~a~~~g~~~~-sl~ell~~--aDvV~l~~P 292 (628)
.++.|+|+|+.|++++.... ..|+++. ++ ||..-- ..-.|+... +++++.+. .|+-++++|
T Consensus 4 ~~v~ivGag~~G~a~~~~~~~~~g~~i~~~~dv~~~~~G--~~i~gipV~~~~~~l~~~~~i~iaii~VP 71 (96)
T PF02629_consen 4 TNVIIVGAGNLGRALLYNGFSMRGFGIVAVFDVDPEKIG--KEIGGIPVYGSMDELEEFIEIDIAIITVP 71 (96)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHHCECEEEEEEECTTTTT--SEETTEEEESSHHHHHHHCTTSEEEEES-
T ss_pred CeEEEECCCCcHHHHHHhHHHHcCCCCEEEEEcCCCccC--cEECCEEeeccHHHhhhhhCCCEEEEEcC
Confidence 47999999999999985543 4555433 34 444211 112255555 78887777 999999999
|
; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D .... |
| >cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases | Back alignment and domain information |
|---|
Probab=89.92 E-value=0.42 Score=51.30 Aligned_cols=64 Identities=19% Similarity=0.117 Sum_probs=44.3
Q ss_pred CeEEEEec-ChhHHHHHHHHHcCCC-------EEEEECCCCCh--hH--HHHc---------CCcc-cCHHHHhccCCEE
Q 006864 230 KTLAVMGF-GKVGSEVARRAKGLGM-------NVIAHDPYAPA--DK--ARAV---------GVEL-VSFDQALATADFI 287 (628)
Q Consensus 230 ktiGIIGl-G~IG~~vA~~l~~~G~-------~V~~~d~~~~~--~~--a~~~---------g~~~-~sl~ell~~aDvV 287 (628)
++|+|||. |.||..+|..|...|. ++..+|..... .. +.++ .+.. .+..+.+++||+|
T Consensus 3 ~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDiv 82 (322)
T cd01338 3 VRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVITDDPNVAFKDADWA 82 (322)
T ss_pred eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhhhhccccccCceEEecCcHHHhCCCCEE
Confidence 58999999 9999999999886664 79999974322 11 1111 0111 2456889999999
Q ss_pred EEcCCC
Q 006864 288 SLHMPL 293 (628)
Q Consensus 288 ~l~~Pl 293 (628)
+++.-.
T Consensus 83 vitaG~ 88 (322)
T cd01338 83 LLVGAK 88 (322)
T ss_pred EEeCCC
Confidence 998753
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase | Back alignment and domain information |
|---|
Probab=89.80 E-value=1 Score=47.46 Aligned_cols=34 Identities=21% Similarity=0.227 Sum_probs=29.0
Q ss_pred cCCeEEEEecChhHHHHHHHHHcCCCE-EEEECCC
Q 006864 228 VGKTLAVMGFGKVGSEVARRAKGLGMN-VIAHDPY 261 (628)
Q Consensus 228 ~GktiGIIGlG~IG~~vA~~l~~~G~~-V~~~d~~ 261 (628)
.|+++.|+|.|.||...++.++.+|++ |++.|+.
T Consensus 144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~ 178 (308)
T TIGR01202 144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETN 178 (308)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCC
Confidence 477899999999999999999999997 5556654
|
|
| >PRK06182 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=89.76 E-value=0.95 Score=46.42 Aligned_cols=35 Identities=26% Similarity=0.286 Sum_probs=31.2
Q ss_pred cCCeEEEEec-ChhHHHHHHHHHcCCCEEEEECCCC
Q 006864 228 VGKTLAVMGF-GKVGSEVARRAKGLGMNVIAHDPYA 262 (628)
Q Consensus 228 ~GktiGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~ 262 (628)
.+|++.|.|. |.||+++|+.|...|++|++.++..
T Consensus 2 ~~k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~ 37 (273)
T PRK06182 2 QKKVALVTGASSGIGKATARRLAAQGYTVYGAARRV 37 (273)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCH
Confidence 4789999985 8999999999999999999988764
|
|
| >TIGR01082 murC UDP-N-acetylmuramate--alanine ligase | Back alignment and domain information |
|---|
Probab=89.72 E-value=0.72 Score=51.52 Aligned_cols=104 Identities=17% Similarity=0.292 Sum_probs=66.5
Q ss_pred EEEEecChhHHH-HHHHHHcCCCEEEEECCCCCh--hHHHHcCCccc--CHHHHhccCCEEEEcCCCCcccc--------
Q 006864 232 LAVMGFGKVGSE-VARRAKGLGMNVIAHDPYAPA--DKARAVGVELV--SFDQALATADFISLHMPLNPTTS-------- 298 (628)
Q Consensus 232 iGIIGlG~IG~~-vA~~l~~~G~~V~~~d~~~~~--~~a~~~g~~~~--sl~ell~~aDvV~l~~Plt~~t~-------- 298 (628)
+-|||.|.+|.+ +|+.|+..|.+|.++|..... +..++.|+... .-.+.+.++|+|+..--..+...
T Consensus 2 ~~~iGiggsGm~~la~~L~~~G~~v~~~D~~~~~~~~~l~~~gi~~~~g~~~~~~~~~d~vV~spgi~~~~p~~~~a~~~ 81 (448)
T TIGR01082 2 IHFVGIGGIGMSGIAEILLNRGYQVSGSDIAENATTKRLEALGIPIYIGHSAENLDDADVVVVSAAIKDDNPEIVEAKER 81 (448)
T ss_pred EEEEEECHHHHHHHHHHHHHCCCeEEEECCCcchHHHHHHHCcCEEeCCCCHHHCCCCCEEEECCCCCCCCHHHHHHHHc
Confidence 679999999998 999999999999999976432 22334466542 12345678999987532222111
Q ss_pred --ccccHHH-Hhc-CC-CCcEEEEcCCCchhcHHHHHHHHhC
Q 006864 299 --KIFNDET-FAK-MK-KGVRIVNVARGGVIDEEALVRALDS 335 (628)
Q Consensus 299 --~li~~~~-l~~-mk-~gailIN~aRg~~vde~aL~~aL~~ 335 (628)
.++++-. +.. ++ .-.+-|-=+.|+.--..-+...|+.
T Consensus 82 ~i~v~~~~el~~~~~~~~~~IaITGTnGKTTTt~ll~~iL~~ 123 (448)
T TIGR01082 82 GIPVIRRAEMLAELMRFRHSIAVAGTHGKTTTTAMIAVILKE 123 (448)
T ss_pred CCceEeHHHHHHHHHhcCcEEEEECCCChHHHHHHHHHHHHH
Confidence 2233322 222 32 2345555567888888888888865
|
UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081. |
| >cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) | Back alignment and domain information |
|---|
Probab=89.71 E-value=0.69 Score=37.68 Aligned_cols=57 Identities=14% Similarity=0.180 Sum_probs=40.8
Q ss_pred EeccCCCCchhhHHhhhhcCCccccceEEeeeec-CccEEEEEEeCCC-CCHHHHHHHhc
Q 006864 563 CRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFR-RNHGIMAIGVDEE-PNQDSLKEIGK 620 (628)
Q Consensus 563 v~~~D~PGvIa~V~~iL~~~~INIa~m~v~R~~~-gg~Al~~i~vD~~-~~~~~l~~L~~ 620 (628)
+.-+|+||.+.++.+++++ +.||..++..|... .....+.+++..+ --++++++|++
T Consensus 3 v~ipdkPG~l~~~~~~i~~-~~nI~~~~~~~~~~~~~~v~v~ie~~~~~~~~~i~~~L~~ 61 (68)
T cd04885 3 VTFPERPGALKKFLELLGP-PRNITEFHYRNQGGDEARVLVGIQVPDREDLAELKERLEA 61 (68)
T ss_pred EECCCCCCHHHHHHHHhCC-CCcEEEEEEEcCCCCceEEEEEEEeCCHHHHHHHHHHHHH
Confidence 5678999999999999999 99999998877542 2233445666543 23356666665
|
This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains. |
| >cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=89.70 E-value=1.3 Score=47.26 Aligned_cols=35 Identities=17% Similarity=0.142 Sum_probs=29.6
Q ss_pred cCCeEEEEecChhHHHHHHHHHc-CC-CEEEEECCCC
Q 006864 228 VGKTLAVMGFGKVGSEVARRAKG-LG-MNVIAHDPYA 262 (628)
Q Consensus 228 ~GktiGIIGlG~IG~~vA~~l~~-~G-~~V~~~d~~~ 262 (628)
.|.++.|+|.|.||...++.++. +| .+|++.|+..
T Consensus 163 ~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~ 199 (341)
T cd08237 163 DRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQ 199 (341)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcH
Confidence 47899999999999999888875 54 6899998764
|
NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase ( |
| >PRK07411 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=89.69 E-value=0.41 Score=52.70 Aligned_cols=37 Identities=19% Similarity=0.206 Sum_probs=32.5
Q ss_pred eeecCCeEEEEecChhHHHHHHHHHcCCC-EEEEECCC
Q 006864 225 VSLVGKTLAVMGFGKVGSEVARRAKGLGM-NVIAHDPY 261 (628)
Q Consensus 225 ~~l~GktiGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~ 261 (628)
..|+..+|.|||+|.+|..+|+.|...|. ++..+|+.
T Consensus 34 ~~L~~~~VlivG~GGlG~~va~~La~~Gvg~l~lvD~D 71 (390)
T PRK07411 34 KRLKAASVLCIGTGGLGSPLLLYLAAAGIGRIGIVDFD 71 (390)
T ss_pred HHHhcCcEEEECCCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 46889999999999999999999998886 67778754
|
|
| >PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed | Back alignment and domain information |
|---|
Probab=89.37 E-value=0.9 Score=53.25 Aligned_cols=36 Identities=25% Similarity=0.260 Sum_probs=32.9
Q ss_pred ecCCeEEEEecChhHHHHHHHHHcCCCEEEEECCCC
Q 006864 227 LVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA 262 (628)
Q Consensus 227 l~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~ 262 (628)
..||++.|||-|..|...|..|+..|++|.+|++..
T Consensus 308 ~~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~ 343 (639)
T PRK12809 308 PRSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHP 343 (639)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCC
Confidence 469999999999999999999999999999998653
|
|
| >TIGR01759 MalateDH-SF1 malate dehydrogenase | Back alignment and domain information |
|---|
Probab=89.18 E-value=1 Score=48.42 Aligned_cols=64 Identities=19% Similarity=0.128 Sum_probs=44.3
Q ss_pred CeEEEEec-ChhHHHHHHHHHcCCC-------EEEEECCCCC----hhHHHHcC---------Ccc-cCHHHHhccCCEE
Q 006864 230 KTLAVMGF-GKVGSEVARRAKGLGM-------NVIAHDPYAP----ADKARAVG---------VEL-VSFDQALATADFI 287 (628)
Q Consensus 230 ktiGIIGl-G~IG~~vA~~l~~~G~-------~V~~~d~~~~----~~~a~~~g---------~~~-~sl~ell~~aDvV 287 (628)
-+|+|||. |.+|+.+|..|...|. ++..+|.... ...+.++. +.. .+..+.+++||+|
T Consensus 4 ~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDvV 83 (323)
T TIGR01759 4 VRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLLAGVVATTDPEEAFKDVDAA 83 (323)
T ss_pred eEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCCcccccchHHHHHhhccccccCCcEEecChHHHhCCCCEE
Confidence 37999998 9999999999986664 7999997431 11111111 111 2456889999999
Q ss_pred EEcCCC
Q 006864 288 SLHMPL 293 (628)
Q Consensus 288 ~l~~Pl 293 (628)
+++.-.
T Consensus 84 VitAG~ 89 (323)
T TIGR01759 84 LLVGAF 89 (323)
T ss_pred EEeCCC
Confidence 997643
|
This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms. |
| >PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional | Back alignment and domain information |
|---|
Probab=89.05 E-value=3.5 Score=48.54 Aligned_cols=68 Identities=24% Similarity=0.326 Sum_probs=50.9
Q ss_pred ecCCeEEEEecChhHHHHHHHHHcCCCEEEEECCCCC----------------------hhHHHHcCCcc---------c
Q 006864 227 LVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAP----------------------ADKARAVGVEL---------V 275 (628)
Q Consensus 227 l~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~----------------------~~~a~~~g~~~---------~ 275 (628)
-.||++.|||.|..|...|..|+..|++|.+||+... .+.....|++. +
T Consensus 191 ~~~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~Gv~i~~~~~v~~dv 270 (652)
T PRK12814 191 KSGKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGGMMRYGIPRFRLPESVIDADIAPLRAMGAEFRFNTVFGRDI 270 (652)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCceeeecCCCCCCCHHHHHHHHHHHHHcCCEEEeCCcccCcc
Confidence 3689999999999999999999999999999985421 11234456542 2
Q ss_pred CHHHHhccCCEEEEcCCCC
Q 006864 276 SFDQALATADFISLHMPLN 294 (628)
Q Consensus 276 sl~ell~~aDvV~l~~Plt 294 (628)
+++++..+.|.|++++-..
T Consensus 271 ~~~~~~~~~DaVilAtGa~ 289 (652)
T PRK12814 271 TLEELQKEFDAVLLAVGAQ 289 (652)
T ss_pred CHHHHHhhcCEEEEEcCCC
Confidence 4566666799999987644
|
|
| >PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP | Back alignment and domain information |
|---|
Probab=89.03 E-value=0.39 Score=44.41 Aligned_cols=34 Identities=32% Similarity=0.460 Sum_probs=29.4
Q ss_pred cCCeEEEEecChhHHHHHHHHHcCCC-EEEEECCC
Q 006864 228 VGKTLAVMGFGKVGSEVARRAKGLGM-NVIAHDPY 261 (628)
Q Consensus 228 ~GktiGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~ 261 (628)
+.+++.|+|+|.+|..+|+.|...|+ ++..+|+.
T Consensus 1 r~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d 35 (135)
T PF00899_consen 1 RNKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDD 35 (135)
T ss_dssp HT-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESS
T ss_pred CCCEEEEECcCHHHHHHHHHHHHhCCCceeecCCc
Confidence 35799999999999999999998897 78888865
|
Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A .... |
| >PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase | Back alignment and domain information |
|---|
Probab=88.85 E-value=1.1 Score=55.23 Aligned_cols=89 Identities=13% Similarity=0.122 Sum_probs=61.9
Q ss_pred CCeEEEEecChhHHHHHHHHHcCCCEEEEECCCCC--------------------------hhHHHHcC----C------
Q 006864 229 GKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAP--------------------------ADKARAVG----V------ 272 (628)
Q Consensus 229 GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~--------------------------~~~a~~~g----~------ 272 (628)
-.++.|+|.|++|+.-++.+.++|++ . .++..- .+..+..+ +
T Consensus 203 P~~vVi~G~G~Vg~gA~~i~~~lg~~-~-v~~~~l~~l~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~f~~~~y~ 280 (1042)
T PLN02819 203 PLVFVFTGSGNVSQGAQEIFKLLPHT-F-VEPSKLPELKGISQNKISTKRVYQVYGCVVTSQDMVEHKDPSKQFDKADYY 280 (1042)
T ss_pred CeEEEEeCCchHHHHHHHHHhhcCCC-c-cCHHHHHHHHHhhcCCccccccceeeeeecChHHHhhccCCccccchhhhc
Confidence 47899999999999999999999776 2 232110 00000000 0
Q ss_pred ----ccc-C-HHHHhccCCEEEEcCCCCccccccccHH-HHhcCCCCc----EEEEcC
Q 006864 273 ----ELV-S-FDQALATADFISLHMPLNPTTSKIFNDE-TFAKMKKGV----RIVNVA 319 (628)
Q Consensus 273 ----~~~-s-l~ell~~aDvV~l~~Plt~~t~~li~~~-~l~~mk~ga----ilIN~a 319 (628)
.+. . +++.+..+|+++.++-..+.+-.++.++ ..+.||+|. .|+|++
T Consensus 281 ~~Pe~y~s~F~~~~~~~advlIn~i~~~~~~P~lvt~~~~~~~mk~G~~~l~vI~DVs 338 (1042)
T PLN02819 281 AHPEHYNPVFHEKIAPYASVIVNCMYWEKRFPRLLTTKQLQDLTRKGGCPLVGVCDIT 338 (1042)
T ss_pred cCchhccchhHHHhHhhCCEEEeeeecCCCCCceeCHHHHHHhhcCCCccceEEEEEc
Confidence 000 1 4578899999999997677788889888 777899998 888876
|
|
| >PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional | Back alignment and domain information |
|---|
Probab=88.82 E-value=1.1 Score=48.09 Aligned_cols=76 Identities=18% Similarity=0.296 Sum_probs=50.7
Q ss_pred CeEEEEe-cChhHHHHHHHHHcCC-CEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEcCCCCccccccccHHHHh
Q 006864 230 KTLAVMG-FGKVGSEVARRAKGLG-MNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFA 307 (628)
Q Consensus 230 ktiGIIG-lG~IG~~vA~~l~~~G-~~V~~~d~~~~~~~a~~~g~~~~sl~ell~~aDvV~l~~Plt~~t~~li~~~~l~ 307 (628)
.+|+||| .|-.|+++.+.|.... +++.......... ..+.+++++++|++++++|-.. ..+...
T Consensus 3 ~~VaIvGAtGy~G~eLlrlL~~hp~~~l~~~~s~~~~~--------~~~~~~~~~~~DvvFlalp~~~------s~~~~~ 68 (313)
T PRK11863 3 PKVFIDGEAGTTGLQIRERLAGRSDIELLSIPEAKRKD--------AAARRELLNAADVAILCLPDDA------AREAVA 68 (313)
T ss_pred cEEEEECCCCHHHHHHHHHHhcCCCeEEEEEecCCCCc--------ccCchhhhcCCCEEEECCCHHH------HHHHHH
Confidence 4799998 8999999999998765 4655543322111 1234566788999999999331 222222
Q ss_pred c-CCCCcEEEEcC
Q 006864 308 K-MKKGVRIVNVA 319 (628)
Q Consensus 308 ~-mk~gailIN~a 319 (628)
. .+.|+.+||.+
T Consensus 69 ~~~~~g~~VIDlS 81 (313)
T PRK11863 69 LIDNPATRVIDAS 81 (313)
T ss_pred HHHhCCCEEEECC
Confidence 2 25789999987
|
|
| >PRK06392 homoserine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=88.79 E-value=1.5 Score=47.28 Aligned_cols=105 Identities=20% Similarity=0.387 Sum_probs=60.3
Q ss_pred eEEEEecChhHHHHHHHHHc--------CCCEEEEE-CCCC--------ChhHH---HHcC----C--cccCHHHHh-cc
Q 006864 231 TLAVMGFGKVGSEVARRAKG--------LGMNVIAH-DPYA--------PADKA---RAVG----V--ELVSFDQAL-AT 283 (628)
Q Consensus 231 tiGIIGlG~IG~~vA~~l~~--------~G~~V~~~-d~~~--------~~~~a---~~~g----~--~~~sl~ell-~~ 283 (628)
+|+|+|||.||+.+++.+.. ++.+|.+. |+.. +.+.. .+.| . ...++++++ .+
T Consensus 2 rVaIiGfG~VG~~va~~L~~~~~~~~~g~~l~VVaVsds~g~l~~~~Gldl~~l~~~~~~g~l~~~~~~~~~~~~ll~~~ 81 (326)
T PRK06392 2 RISIIGLGNVGLNVLRIIKSRNDDRRNNNGISVVSVSDSKLSYYNERGLDIGKIISYKEKGRLEEIDYEKIKFDEIFEIK 81 (326)
T ss_pred EEEEECCCHHHHHHHHHHHhCHHhHhcCCCeEEEEEEECCCcccCCcCCChHHHHHHHhcCccccCCCCcCCHHHHhcCC
Confidence 79999999999999999865 56676653 4331 11111 1101 1 112466654 46
Q ss_pred CCEEEEcCCCCccccccccHHHHhcCCCCcEEEEcCCCchh-cHHHHHHHHhCC
Q 006864 284 ADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVI-DEEALVRALDSG 336 (628)
Q Consensus 284 aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~~v-de~aL~~aL~~g 336 (628)
+|+|+=|+|...+-..- -.-..+.|+.|.-+|-..-|.+. ..+.|.++.+++
T Consensus 82 ~DVvVE~t~~~~~g~~~-~~~~~~aL~~G~hVVTaNKgalA~~~~eL~~lA~~~ 134 (326)
T PRK06392 82 PDVIVDVTPASKDGIRE-KNLYINAFEHGIDVVTANKSGLANHWHDIMDSASKN 134 (326)
T ss_pred CCEEEECCCCCCcCchH-HHHHHHHHHCCCEEEcCCHHHHHhhHHHHHHHHHHc
Confidence 88998888743210101 12223446777777777666665 455666655554
|
|
| >TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=88.78 E-value=1.5 Score=47.10 Aligned_cols=45 Identities=33% Similarity=0.423 Sum_probs=35.0
Q ss_pred cCCeEEEEecChhHHHHHHHHHcCCCE-EEEECCCCC-hhHHHHcCC
Q 006864 228 VGKTLAVMGFGKVGSEVARRAKGLGMN-VIAHDPYAP-ADKARAVGV 272 (628)
Q Consensus 228 ~GktiGIIGlG~IG~~vA~~l~~~G~~-V~~~d~~~~-~~~a~~~g~ 272 (628)
.|+++.|.|.|.+|...++.++.+|.+ |++.|+... .+.++++|+
T Consensus 176 ~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~~Ga 222 (358)
T TIGR03451 176 RGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWAREFGA 222 (358)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCC
Confidence 478999999999999999999999985 988887642 233444443
|
Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione. |
| >cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD) | Back alignment and domain information |
|---|
Probab=88.71 E-value=1.9 Score=45.68 Aligned_cols=35 Identities=26% Similarity=0.394 Sum_probs=31.7
Q ss_pred cCCeEEEEecChhHHHHHHHHHcCCCEEEEECCCC
Q 006864 228 VGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA 262 (628)
Q Consensus 228 ~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~ 262 (628)
.|.++.|.|.|.+|+.+++.++++|.+|++.++..
T Consensus 163 ~~~~vlV~g~g~iG~~~~~~a~~~G~~vi~~~~~~ 197 (333)
T cd08296 163 PGDLVAVQGIGGLGHLAVQYAAKMGFRTVAISRGS 197 (333)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCh
Confidence 46899999999999999999999999999988753
|
Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal |
| >PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional | Back alignment and domain information |
|---|
Probab=88.63 E-value=2.5 Score=50.99 Aligned_cols=107 Identities=13% Similarity=0.214 Sum_probs=70.2
Q ss_pred CeEEEEecChhHHHH-HHHHHcCCCEEEEECCCCCh--hHHHHcCCccc--CHHHHhccCCEEEEcCCCCcccc------
Q 006864 230 KTLAVMGFGKVGSEV-ARRAKGLGMNVIAHDPYAPA--DKARAVGVELV--SFDQALATADFISLHMPLNPTTS------ 298 (628)
Q Consensus 230 ktiGIIGlG~IG~~v-A~~l~~~G~~V~~~d~~~~~--~~a~~~g~~~~--sl~ell~~aDvV~l~~Plt~~t~------ 298 (628)
+++.|+|+|.+|.+. |+.|+..|++|.++|..... ...++.|+... ...+.+..+|+|+..--..++..
T Consensus 5 ~~i~viG~G~sG~salA~~L~~~G~~V~~sD~~~~~~~~~L~~~gi~~~~g~~~~~~~~~d~vV~SpgI~~~~p~~~~a~ 84 (809)
T PRK14573 5 LFYHFIGIGGIGMSALAHILLDRGYSVSGSDLSEGKTVEKLKAKGARFFLGHQEEHVPEDAVVVYSSSISKDNVEYLSAK 84 (809)
T ss_pred ceEEEEEecHHhHHHHHHHHHHCCCeEEEECCCCChHHHHHHHCCCEEeCCCCHHHcCCCCEEEECCCcCCCCHHHHHHH
Confidence 468999999999998 99999999999999975422 22334466543 23356778999987533332221
Q ss_pred ----ccccHHHH-hc-CCC-CcEEEEcCCCchhcHHHHHHHHhCC
Q 006864 299 ----KIFNDETF-AK-MKK-GVRIVNVARGGVIDEEALVRALDSG 336 (628)
Q Consensus 299 ----~li~~~~l-~~-mk~-gailIN~aRg~~vde~aL~~aL~~g 336 (628)
.++.+-+| .. ++. ..+-|-=+.|+.--..-+...|+..
T Consensus 85 ~~gi~v~~~~el~~~~~~~~~~IaITGTnGKTTTt~li~~iL~~~ 129 (809)
T PRK14573 85 SRGNRLVHRAELLAELMQEQISILVSGSHGKTTVSSLITAIFQEA 129 (809)
T ss_pred HCCCcEEeHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHHhC
Confidence 22333333 23 332 3455666788888888888888763
|
|
| >PLN02740 Alcohol dehydrogenase-like | Back alignment and domain information |
|---|
Probab=88.52 E-value=1.7 Score=47.31 Aligned_cols=45 Identities=31% Similarity=0.588 Sum_probs=35.7
Q ss_pred cCCeEEEEecChhHHHHHHHHHcCCC-EEEEECCCC-ChhHHHHcCC
Q 006864 228 VGKTLAVMGFGKVGSEVARRAKGLGM-NVIAHDPYA-PADKARAVGV 272 (628)
Q Consensus 228 ~GktiGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~-~~~~a~~~g~ 272 (628)
.|.++.|+|.|.||...++.++.+|. +|++.|+.. ..+.++++|+
T Consensus 198 ~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga 244 (381)
T PLN02740 198 AGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKEMGI 244 (381)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHcCC
Confidence 58899999999999999999999999 699988764 2333444443
|
|
| >TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form | Back alignment and domain information |
|---|
Probab=88.51 E-value=1.5 Score=46.79 Aligned_cols=75 Identities=17% Similarity=0.291 Sum_probs=51.4
Q ss_pred eEEEEe-cChhHHHHHHHHHcCC-CEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEcCCCCccccccccHHHHhc
Q 006864 231 TLAVMG-FGKVGSEVARRAKGLG-MNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAK 308 (628)
Q Consensus 231 tiGIIG-lG~IG~~vA~~l~~~G-~~V~~~d~~~~~~~a~~~g~~~~sl~ell~~aDvV~l~~Plt~~t~~li~~~~l~~ 308 (628)
+++|+| -|-.|.++.++|.... +++........ +...+.+++++++|++++++|-. ... +....
T Consensus 3 ~v~IvGasGy~G~el~rlL~~HP~~el~~l~s~~~--------~~~~~~~~~~~~~D~vFlalp~~-~s~-----~~~~~ 68 (310)
T TIGR01851 3 KVFIDGEAGTTGLQIRERLSGRDDIELLSIAPDRR--------KDAAERAKLLNAADVAILCLPDD-AAR-----EAVSL 68 (310)
T ss_pred eEEEECCCChhHHHHHHHHhCCCCeEEEEEecccc--------cCcCCHhHhhcCCCEEEECCCHH-HHH-----HHHHH
Confidence 689997 5999999999998754 56665532211 22335677888999999999933 222 22222
Q ss_pred -CCCCcEEEEcC
Q 006864 309 -MKKGVRIVNVA 319 (628)
Q Consensus 309 -mk~gailIN~a 319 (628)
.+.|+.+||.+
T Consensus 69 ~~~~g~~VIDlS 80 (310)
T TIGR01851 69 VDNPNTCIIDAS 80 (310)
T ss_pred HHhCCCEEEECC
Confidence 35789999987
|
This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment. |
| >PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=88.37 E-value=3.1 Score=46.34 Aligned_cols=109 Identities=18% Similarity=0.184 Sum_probs=67.1
Q ss_pred ecC-CeEEEEecChhHHHHHHHHHcC--CCEEEEECCCCChh--HHHHcCCccc-C--HHHHhccCCEEEEcCCCCcccc
Q 006864 227 LVG-KTLAVMGFGKVGSEVARRAKGL--GMNVIAHDPYAPAD--KARAVGVELV-S--FDQALATADFISLHMPLNPTTS 298 (628)
Q Consensus 227 l~G-ktiGIIGlG~IG~~vA~~l~~~--G~~V~~~d~~~~~~--~a~~~g~~~~-s--l~ell~~aDvV~l~~Plt~~t~ 298 (628)
+.| |++.|||+|.+|.+.++.|... |++|.++|...... ...+.|++.. . -.+.+.++|+|+..--..+...
T Consensus 4 ~~~~~~v~viG~G~sG~s~~~~l~~~~~~~~v~~~D~~~~~~~~~~l~~g~~~~~g~~~~~~~~~~d~vV~SpgI~~~~p 83 (438)
T PRK04663 4 WQGIKNVVVVGLGITGLSVVKHLRKYQPQLTVKVIDTRETPPGQEQLPEDVELHSGGWNLEWLLEADLVVTNPGIALATP 83 (438)
T ss_pred ccCCceEEEEeccHHHHHHHHHHHhcCCCCeEEEEeCCCCchhHHHhhcCCEEEeCCCChHHhccCCEEEECCCCCCCCH
Confidence 345 7899999999999999999876 58999999654221 1112265542 1 2234578998877542222211
Q ss_pred ----------ccccHHHH--hcCCCCcEEEEcCCCchhcHHHHHHHHhC
Q 006864 299 ----------KIFNDETF--AKMKKGVRIVNVARGGVIDEEALVRALDS 335 (628)
Q Consensus 299 ----------~li~~~~l--~~mk~gailIN~aRg~~vde~aL~~aL~~ 335 (628)
.++.+-++ ..++.-.+-|-=+-|+.--..-+...|+.
T Consensus 84 ~~~~a~~~gi~i~~~~el~~~~~~~~~I~VTGTnGKTTTt~ll~~iL~~ 132 (438)
T PRK04663 84 EIQQVLAAGIPVVGDIELFAWAVDKPVIAITGSNGKSTVTDLTGVMAKA 132 (438)
T ss_pred HHHHHHHCCCcEEEHHHHHHhhcCCCEEEEeCCCCHHHHHHHHHHHHHH
Confidence 12333222 23443455555567888888877777764
|
|
| >TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial | Back alignment and domain information |
|---|
Probab=88.29 E-value=1.3 Score=49.89 Aligned_cols=35 Identities=31% Similarity=0.432 Sum_probs=32.3
Q ss_pred ecCCeEEEEecChhHHHHHHHHHcCCCEEEEECCC
Q 006864 227 LVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPY 261 (628)
Q Consensus 227 l~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~ 261 (628)
-.|+++.|||-|.+|...|..|+..|++|..|+..
T Consensus 139 ~~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~ 173 (467)
T TIGR01318 139 PTGKRVAVIGAGPAGLACADILARAGVQVVVFDRH 173 (467)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Confidence 37899999999999999999999999999999864
|
This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli. |
| >PRK06128 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=88.25 E-value=2.1 Score=44.73 Aligned_cols=35 Identities=17% Similarity=0.222 Sum_probs=30.6
Q ss_pred eecCCeEEEEec-ChhHHHHHHHHHcCCCEEEEECC
Q 006864 226 SLVGKTLAVMGF-GKVGSEVARRAKGLGMNVIAHDP 260 (628)
Q Consensus 226 ~l~GktiGIIGl-G~IG~~vA~~l~~~G~~V~~~d~ 260 (628)
.+.||++.|.|- |.||+++|+.|...|++|+..++
T Consensus 52 ~l~~k~vlITGas~gIG~~~a~~l~~~G~~V~i~~~ 87 (300)
T PRK06128 52 RLQGRKALITGADSGIGRATAIAFAREGADIALNYL 87 (300)
T ss_pred ccCCCEEEEecCCCcHHHHHHHHHHHcCCEEEEEeC
Confidence 478999999985 89999999999999999987654
|
|
| >PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=88.19 E-value=0.77 Score=54.28 Aligned_cols=67 Identities=7% Similarity=0.115 Sum_probs=51.0
Q ss_pred EEEEeccCCCCchhhHHhhhhcCCccccceEEeeeecCccEEEE--EEeCCCCC-HHHHHHHhcccCcccc
Q 006864 560 LILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMA--IGVDEEPN-QDSLKEIGKVHFVARI 627 (628)
Q Consensus 560 ~Llv~~~D~PGvIa~V~~iL~~~~INIa~m~v~R~~~gg~Al~~--i~vD~~~~-~~~l~~L~~l~~v~~v 627 (628)
.|.+...|++|+++.|++++++.++||..+++. ..+++.+.+. |++.+.-. ..++.+|+++++|.+|
T Consensus 628 ~i~I~~~dr~GlL~dI~~~i~~~~~nI~~v~~~-~~~~~~~~~~~~ieV~~~~~L~~i~~~Lr~i~~V~~V 697 (702)
T PRK11092 628 EIKVEMFNHQGALANLTAAINTTGSNIQSLNTE-EKDGRVYSAFIRLTARDRVHLANIMRKIRVMPDVIKV 697 (702)
T ss_pred EEEEEEeCCCCHHHHHHHHHHHCCCCeEEEEEE-EcCCCEEEEEEEEEECCHHHHHHHHHHHhCCCCcceE
Confidence 344677999999999999999999999999974 3344566555 44444311 2789999999999876
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 628 | ||||
| 2g76_A | 335 | Crystal Structure Of Human 3-Phosphoglycerate Dehyd | 7e-74 | ||
| 3ddn_A | 528 | Crystal Structure Of Hydroxypyruvic Acid Phosphate | 7e-68 | ||
| 1ygy_A | 529 | Crystal Structure Of D-3-Phosphoglycerate Dehydroge | 7e-68 | ||
| 1wwk_A | 307 | Crystal Structure Of Phosphoglycerate Dehydrogenase | 2e-56 | ||
| 2ekl_A | 313 | Structure Of St1218 Protein From Sulfolobus Tokodai | 1e-42 | ||
| 2dbr_A | 334 | Crystal Structure Of Glyoxylate Reductase (Ph0597) | 3e-39 | ||
| 3k5p_A | 416 | Crystal Structure Of Amino Acid-Binding Act: D-Isom | 1e-38 | ||
| 2dbq_A | 334 | Crystal Structure Of Glyoxylate Reductase (Ph0597) | 3e-37 | ||
| 2d0i_A | 333 | Crystal Structure Ph0520 Protein From Pyrococcus Ho | 5e-33 | ||
| 2p9g_A | 410 | Crystal Structure Of Serine Bound G336v,G337v Doubl | 5e-33 | ||
| 2p9c_A | 410 | Crystal Structure Of Serine Bound G336v Mutant Of E | 6e-33 | ||
| 1psd_A | 409 | The Allosteric Ligand Site In The Vmax-Type Coopera | 1e-32 | ||
| 2ome_A | 336 | Crystal Structure Of Human Ctbp2 Dehydrogenase Comp | 6e-32 | ||
| 1mx3_A | 347 | Crystal Structure Of Ctbp Dehydrogenase Core Holo F | 9e-32 | ||
| 1hku_A | 358 | CtbpBARS: A DUAL-Function Protein Involved In Trans | 1e-31 | ||
| 1gdh_A | 320 | Crystal Structure Of A Nad-Dependent D-Glycerate De | 1e-31 | ||
| 1hl3_A | 358 | CtbpBARS IN TERNARY COMPLEX WITH NAD(H) AND PIDLSKK | 1e-31 | ||
| 3ga0_A | 358 | Ctbp1BARS GLY172->glu Mutant Structure: Impairing N | 9e-31 | ||
| 1yba_A | 410 | The Active Form Of Phosphoglycerate Dehydrogenase L | 2e-30 | ||
| 2gcg_A | 330 | Ternary Crystal Structure Of Human Glyoxylate Reduc | 1e-29 | ||
| 1sc6_A | 404 | Crystal Structure Of W139g D-3-Phosphoglycerate Deh | 3e-29 | ||
| 4e5k_A | 329 | Thermostable Phosphite Dehydrogenase In Complex Wit | 3e-29 | ||
| 4e5n_A | 330 | Thermostable Phosphite Dehydrogenase In Complex Wit | 3e-29 | ||
| 3gg9_A | 352 | Crystal Structure Of Putative D-3-Phosphoglycerate | 5e-29 | ||
| 2h1s_A | 328 | Crystal Structure Of A GlyoxylateHYDROXYPYRUVATE RE | 9e-29 | ||
| 4e5m_A | 329 | Thermostable Phosphite Dehydrogenase E175aA176R IN | 3e-28 | ||
| 4e5p_A | 332 | Thermostable Phosphite Dehydrogenase A176r Variant | 3e-28 | ||
| 4ebf_A | 334 | Semet Thermostable Phosphite Dehydrogenase Glu175-A | 4e-28 | ||
| 4g2n_A | 345 | Crystal Structure Of Putative D-Isomer Specific 2-H | 5e-28 | ||
| 1j49_A | 333 | Insights Into Domain Closure, Substrate Specificity | 8e-27 | ||
| 2dld_A | 337 | D-Lactate Dehydrogenase Complexed With Nadh And Oxa | 1e-26 | ||
| 3n7u_A | 351 | Nad-Dependent Formate Dehydrogenase From Higher-Pla | 4e-26 | ||
| 3naq_A | 357 | Apo-Form Of Nad-Dependent Formate Dehydrogenase Fro | 4e-26 | ||
| 1j4a_A | 333 | Insights Into Domain Closure, Substrate Specificity | 1e-25 | ||
| 3kb6_A | 334 | Crystal Structure Of D-lactate Dehydrogenase From A | 2e-25 | ||
| 2cuk_A | 311 | Crystal Structure Of Tt0316 Protein From Thermus Th | 3e-25 | ||
| 2w2l_D | 348 | Crystal Structure Of The Holo Forms Of Rhodotorula | 5e-24 | ||
| 2w2k_A | 348 | Crystal Structure Of The Apo Forms Of Rhodotorula G | 5e-24 | ||
| 1dxy_A | 333 | Structure Of D-2-Hydroxyisocaproate Dehydrogenase L | 6e-24 | ||
| 2w2k_B | 348 | Crystal Structure Of The Apo Forms Of Rhodotorula G | 7e-24 | ||
| 2nac_A | 393 | High Resolution Structures Of Holo And Apo Formate | 1e-22 | ||
| 2go1_A | 401 | Nad-Dependent Formate Dehydrogenase From Pseudomona | 2e-22 | ||
| 2gug_A | 401 | Nad-dependent Formate Dehydrogenase From Pseudomona | 2e-22 | ||
| 3ba1_A | 333 | Structure Of Hydroxyphenylpyruvate Reductase From C | 4e-22 | ||
| 3evt_A | 324 | Crystal Structure Of Phosphoglycerate Dehydrogenase | 4e-22 | ||
| 3fn4_A | 401 | Apo-form Of Nad-dependent Formate Dehydrogenase Fro | 7e-22 | ||
| 2gsd_A | 402 | Nad-dependent Formate Dehydrogenase From Bacterium | 7e-22 | ||
| 2o4c_A | 380 | Crystal Structure Of D-erythronate-4-phosphate Dehy | 1e-20 | ||
| 2yq4_A | 343 | Crystal Structure Of D-isomer Specific 2-hydroxyaci | 1e-20 | ||
| 4dgs_A | 340 | The Crystals Structure Of Dehydrogenase From Rhizob | 6e-20 | ||
| 2fss_A | 365 | Candida Boidinii Formate Dehydrogenase (Fdh) K47e M | 1e-18 | ||
| 2j6i_A | 364 | Candida Boidinii Formate Dehydrogenase (Fdh) C-Term | 1e-18 | ||
| 3oet_A | 381 | D-Erythronate-4-Phosphate Dehydrogenase Complexed W | 1e-17 | ||
| 3hg7_A | 324 | Crystal Structure Of D-Isomer Specific 2-Hydroxyaci | 2e-17 | ||
| 1xdw_A | 331 | Nad+-Dependent (R)-2-Hydroxyglutarate Dehydrogenase | 6e-16 | ||
| 4hy3_A | 365 | Crystal Structure Of A Phosphoglycerate Oxidoreduct | 9e-13 | ||
| 3gvx_A | 290 | Crystal Structure Of Glycerate Dehydrogenase Relate | 4e-11 | ||
| 3kbo_A | 315 | 2.14 Angstrom Crystal Structure Of Putative Oxidore | 6e-11 | ||
| 1qp8_A | 303 | Crystal Structure Of A Putative Formate Dehydrogena | 7e-05 |
| >pdb|2G76|A Chain A, Crystal Structure Of Human 3-Phosphoglycerate Dehydrogenase Length = 335 | Back alignment and structure |
|
| >pdb|3DDN|A Chain A, Crystal Structure Of Hydroxypyruvic Acid Phosphate Bound D-3- Phosphoglycerate Dehydrogenase In Mycobacterium Tuberculosis Length = 528 | Back alignment and structure |
|
| >pdb|1YGY|A Chain A, Crystal Structure Of D-3-Phosphoglycerate Dehydrogenase From Mycobacterium Tuberculosis Length = 529 | Back alignment and structure |
|
| >pdb|1WWK|A Chain A, Crystal Structure Of Phosphoglycerate Dehydrogenase From Pyrococcus Horikoshii Ot3 Length = 307 | Back alignment and structure |
|
| >pdb|2EKL|A Chain A, Structure Of St1218 Protein From Sulfolobus Tokodaii Length = 313 | Back alignment and structure |
|
| >pdb|2DBR|A Chain A, Crystal Structure Of Glyoxylate Reductase (Ph0597) From Pyrococcus Horikoshii Ot3, Complexed With Nadp (P1) Length = 334 | Back alignment and structure |
|
| >pdb|3K5P|A Chain A, Crystal Structure Of Amino Acid-Binding Act: D-Isomer Specific 2- Hydroxyacid Dehydrogenase Catalytic Domain From Brucella Melitensis Length = 416 | Back alignment and structure |
|
| >pdb|2DBQ|A Chain A, Crystal Structure Of Glyoxylate Reductase (Ph0597) From Pyrococcus Horikoshii Ot3, Complexed With Nadp (I41) Length = 334 | Back alignment and structure |
|
| >pdb|2D0I|A Chain A, Crystal Structure Ph0520 Protein From Pyrococcus Horikoshii Ot3 Length = 333 | Back alignment and structure |
|
| >pdb|2P9G|A Chain A, Crystal Structure Of Serine Bound G336v,G337v Double Mutant Of E.Coli Phosphoglycerate Dehydrogenase Length = 410 | Back alignment and structure |
|
| >pdb|2P9C|A Chain A, Crystal Structure Of Serine Bound G336v Mutant Of E.Coli Phosphoglycerate Dehydrogenase Length = 410 | Back alignment and structure |
|
| >pdb|1PSD|A Chain A, The Allosteric Ligand Site In The Vmax-Type Cooperative Enzyme Phosphoglycerate Dehydrogenase Length = 409 | Back alignment and structure |
|
| >pdb|2OME|A Chain A, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed With Nad(H) Length = 336 | Back alignment and structure |
|
| >pdb|1MX3|A Chain A, Crystal Structure Of Ctbp Dehydrogenase Core Holo Form Length = 347 | Back alignment and structure |
|
| >pdb|1HKU|A Chain A, CtbpBARS: A DUAL-Function Protein Involved In Transcription Corepression And Golgi Membrane Fission Length = 358 | Back alignment and structure |
|
| >pdb|1GDH|A Chain A, Crystal Structure Of A Nad-Dependent D-Glycerate Dehydrogenase At 2.4 Angstroms Resolution Length = 320 | Back alignment and structure |
|
| >pdb|1HL3|A Chain A, CtbpBARS IN TERNARY COMPLEX WITH NAD(H) AND PIDLSKK PEPTIDE Length = 358 | Back alignment and structure |
|
| >pdb|3GA0|A Chain A, Ctbp1BARS GLY172->glu Mutant Structure: Impairing Nad(H) Binding And Dimerization Length = 358 | Back alignment and structure |
|
| >pdb|1YBA|A Chain A, The Active Form Of Phosphoglycerate Dehydrogenase Length = 410 | Back alignment and structure |
|
| >pdb|2GCG|A Chain A, Ternary Crystal Structure Of Human Glyoxylate ReductaseHYDROXYPYRUVATE REDUCTASE Length = 330 | Back alignment and structure |
|
| >pdb|1SC6|A Chain A, Crystal Structure Of W139g D-3-Phosphoglycerate Dehydrogenase Complexed With Nad+ Length = 404 | Back alignment and structure |
|
| >pdb|4E5K|A Chain A, Thermostable Phosphite Dehydrogenase In Complex With Nad And Sulfite Length = 329 | Back alignment and structure |
|
| >pdb|4E5N|A Chain A, Thermostable Phosphite Dehydrogenase In Complex With Nad Length = 330 | Back alignment and structure |
|
| >pdb|3GG9|A Chain A, Crystal Structure Of Putative D-3-Phosphoglycerate Dehydrogenase Oxidoreductase From Ralstonia Solanacearum Length = 352 | Back alignment and structure |
|
| >pdb|2H1S|A Chain A, Crystal Structure Of A GlyoxylateHYDROXYPYRUVATE REDUCTASE FROM HOMO Sapiens Length = 328 | Back alignment and structure |
|
| >pdb|4E5M|A Chain A, Thermostable Phosphite Dehydrogenase E175aA176R IN COMPLEX WITH NADP Length = 329 | Back alignment and structure |
|
| >pdb|4E5P|A Chain A, Thermostable Phosphite Dehydrogenase A176r Variant In Complex With Nad Length = 332 | Back alignment and structure |
|
| >pdb|4EBF|A Chain A, Semet Thermostable Phosphite Dehydrogenase Glu175-Ala Mutant Length = 334 | Back alignment and structure |
|
| >pdb|4G2N|A Chain A, Crystal Structure Of Putative D-Isomer Specific 2-Hydroxyacid Dehydrogenase, Nad-Binding From Polaromonas Sp. Js6 66 Length = 345 | Back alignment and structure |
|
| >pdb|1J49|A Chain A, Insights Into Domain Closure, Substrate Specificity And Catalysis Of D-Lactate Dehydrogenase From Lactobacillus Bulgaricus Length = 333 | Back alignment and structure |
|
| >pdb|2DLD|A Chain A, D-Lactate Dehydrogenase Complexed With Nadh And Oxamate Length = 337 | Back alignment and structure |
|
| >pdb|3N7U|A Chain A, Nad-Dependent Formate Dehydrogenase From Higher-Plant Arabid Thaliana In Complex With Nad And Azide Length = 351 | Back alignment and structure |
|
| >pdb|3NAQ|A Chain A, Apo-Form Of Nad-Dependent Formate Dehydrogenase From Higher-Plant Arabidopsis Thaliana Length = 357 | Back alignment and structure |
|
| >pdb|1J4A|A Chain A, Insights Into Domain Closure, Substrate Specificity And Catalysis Of D-Lactate Dehydrogenase From Lactobacillus Bulgaricus Length = 333 | Back alignment and structure |
|
| >pdb|3KB6|A Chain A, Crystal Structure Of D-lactate Dehydrogenase From Aquifex Aeolicus Complexed With Nad And Lactic Acid Length = 334 | Back alignment and structure |
|
| >pdb|2CUK|A Chain A, Crystal Structure Of Tt0316 Protein From Thermus Thermophilus Hb8 Length = 311 | Back alignment and structure |
|
| >pdb|2W2L|D Chain D, Crystal Structure Of The Holo Forms Of Rhodotorula Graminis D-Mandelate Dehydrogenase At 2.5a Length = 348 | Back alignment and structure |
|
| >pdb|2W2K|A Chain A, Crystal Structure Of The Apo Forms Of Rhodotorula Graminis D-Mandelate Dehydrogenase At 1.8a. Length = 348 | Back alignment and structure |
|
| >pdb|1DXY|A Chain A, Structure Of D-2-Hydroxyisocaproate Dehydrogenase Length = 333 | Back alignment and structure |
|
| >pdb|2W2K|B Chain B, Crystal Structure Of The Apo Forms Of Rhodotorula Graminis D-Mandelate Dehydrogenase At 1.8a Length = 348 | Back alignment and structure |
|
| >pdb|2NAC|A Chain A, High Resolution Structures Of Holo And Apo Formate Dehydrogenase Length = 393 | Back alignment and structure |
|
| >pdb|2GO1|A Chain A, Nad-Dependent Formate Dehydrogenase From Pseudomonas Sp.101 Length = 401 | Back alignment and structure |
|
| >pdb|2GUG|A Chain A, Nad-dependent Formate Dehydrogenase From Pseudomonas Sp.101 In Complex With Formate Length = 401 | Back alignment and structure |
|
| >pdb|3BA1|A Chain A, Structure Of Hydroxyphenylpyruvate Reductase From Coleus Blu Length = 333 | Back alignment and structure |
|
| >pdb|3EVT|A Chain A, Crystal Structure Of Phosphoglycerate Dehydrogenase From Lactobacillus Plantarum Length = 324 | Back alignment and structure |
|
| >pdb|3FN4|A Chain A, Apo-form Of Nad-dependent Formate Dehydrogenase From Bacterium Moraxella Sp.c-1 In Closed Conformation Length = 401 | Back alignment and structure |
|
| >pdb|2GSD|A Chain A, Nad-dependent Formate Dehydrogenase From Bacterium Moraxella Sp.c2 In Complex With Nad And Azide Length = 402 | Back alignment and structure |
|
| >pdb|2O4C|A Chain A, Crystal Structure Of D-erythronate-4-phosphate Dehydrogenase Complexed With Nad Length = 380 | Back alignment and structure |
|
| >pdb|2YQ4|A Chain A, Crystal Structure Of D-isomer Specific 2-hydroxyacid Dehydrogenase From Lactobacillus Delbrueckii Ssp. Bulgaricus Length = 343 | Back alignment and structure |
|
| >pdb|4DGS|A Chain A, The Crystals Structure Of Dehydrogenase From Rhizobium Meliloti Length = 340 | Back alignment and structure |
|
| >pdb|2FSS|A Chain A, Candida Boidinii Formate Dehydrogenase (Fdh) K47e Mutant Length = 365 | Back alignment and structure |
|
| >pdb|2J6I|A Chain A, Candida Boidinii Formate Dehydrogenase (Fdh) C-Terminal Mutant Length = 364 | Back alignment and structure |
|
| >pdb|3OET|A Chain A, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad Length = 381 | Back alignment and structure |
|
| >pdb|3HG7|A Chain A, Crystal Structure Of D-Isomer Specific 2-Hydroxyacid Dehydrogenase Family Protein From Aeromonas Salmonicida Subsp. Salmonicida A449 Length = 324 | Back alignment and structure |
|
| >pdb|1XDW|A Chain A, Nad+-Dependent (R)-2-Hydroxyglutarate Dehydrogenase From Acidaminococcus Fermentans Length = 331 | Back alignment and structure |
|
| >pdb|4HY3|A Chain A, Crystal Structure Of A Phosphoglycerate Oxidoreductase From Rhizobium Etli Length = 365 | Back alignment and structure |
|
| >pdb|3GVX|A Chain A, Crystal Structure Of Glycerate Dehydrogenase Related Protein From Thermoplasma Acidophilum Length = 290 | Back alignment and structure |
|
| >pdb|3KBO|A Chain A, 2.14 Angstrom Crystal Structure Of Putative Oxidoreductase (ycdw) From Salmonella Typhimurium In Complex With Nadp Length = 315 | Back alignment and structure |
|
| >pdb|1QP8|A Chain A, Crystal Structure Of A Putative Formate Dehydrogenase From Pyrobaculum Aerophilum Length = 303 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 628 | |||
| 1ygy_A | 529 | PGDH, D-3-phosphoglycerate dehydrogenase; oxidored | 0.0 | |
| 1wwk_A | 307 | Phosphoglycerate dehydrogenase; riken structural g | 1e-173 | |
| 2g76_A | 335 | 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor | 1e-172 | |
| 3k5p_A | 416 | D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, | 1e-168 | |
| 2d0i_A | 333 | Dehydrogenase; structural genomics, NPPSFA, nation | 1e-162 | |
| 2ekl_A | 313 | D-3-phosphoglycerate dehydrogenase; structural gen | 1e-161 | |
| 1sc6_A | 404 | PGDH, D-3-phosphoglycerate dehydrogenase; alloster | 1e-155 | |
| 1mx3_A | 347 | CTBP1, C-terminal binding protein 1; nuclear prote | 1e-154 | |
| 3jtm_A | 351 | Formate dehydrogenase, mitochondrial; mitochondrio | 1e-143 | |
| 2j6i_A | 364 | Formate dehydrogenase; oxidoreductase, D-specific- | 1e-143 | |
| 2o4c_A | 380 | Erythronate-4-phosphate dehydrogenase; erythronate | 1e-136 | |
| 3gg9_A | 352 | D-3-phosphoglycerate dehydrogenase oxidoreductase; | 1e-136 | |
| 2nac_A | 393 | NAD-dependent formate dehydrogenase; oxidoreductas | 1e-135 | |
| 3gvx_A | 290 | Glycerate dehydrogenase related protein; NYSGXRC, | 1e-133 | |
| 3oet_A | 381 | Erythronate-4-phosphate dehydrogenase; structural | 1e-129 | |
| 4e5n_A | 330 | Thermostable phosphite dehydrogenase; D-2-hydroxya | 1e-125 | |
| 2dbq_A | 334 | Glyoxylate reductase; D-3-phosphoglycerate dehydro | 1e-120 | |
| 2pi1_A | 334 | D-lactate dehydrogenase; oxidoreductase, D-LDH, NA | 1e-114 | |
| 1j4a_A | 333 | D-LDH, D-lactate dehydrogenase; NAD-dependent dehy | 1e-113 | |
| 1dxy_A | 333 | D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxyc | 1e-112 | |
| 1xdw_A | 331 | NAD+-dependent (R)-2-hydroxyglutarate dehydrogenas | 1e-107 | |
| 1gdh_A | 320 | D-glycerate dehydrogenase; oxidoreductase(CHOH (D) | 1e-106 | |
| 2cuk_A | 311 | Glycerate dehydrogenase/glyoxylate reductase; stru | 1e-105 | |
| 1qp8_A | 303 | Formate dehydrogenase; oxidoreductase; HET: NDP; 2 | 1e-103 | |
| 2gcg_A | 330 | Glyoxylate reductase/hydroxypyruvate reductase; NA | 1e-101 | |
| 4g2n_A | 345 | D-isomer specific 2-hydroxyacid dehydrogenase, Na; | 2e-94 | |
| 2w2k_A | 348 | D-mandelate dehydrogenase; 2-hydroxyacid dehydroge | 9e-94 | |
| 3evt_A | 324 | Phosphoglycerate dehydrogenase; structural genomic | 4e-90 | |
| 4dgs_A | 340 | Dehydrogenase; structural genomics, PSI-biology, N | 7e-82 | |
| 3ba1_A | 333 | HPPR, hydroxyphenylpyruvate reductase; two domain | 6e-81 | |
| 3hg7_A | 324 | D-isomer specific 2-hydroxyacid dehydrogenase FAM | 1e-58 | |
| 3pp8_A | 315 | Glyoxylate/hydroxypyruvate reductase A; structural | 1e-53 | |
| 3d4o_A | 293 | Dipicolinate synthase subunit A; NP_243269.1, stru | 3e-17 | |
| 2rir_A | 300 | Dipicolinate synthase, A chain; structural genomic | 5e-08 | |
| 3h9u_A | 436 | Adenosylhomocysteinase; NAD CO-factor complex, str | 8e-06 | |
| 3gvp_A | 435 | Adenosylhomocysteinase 3; protein CO-factor comple | 8e-06 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 2e-05 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 2e-05 | |
| 3c24_A | 286 | Putative oxidoreductase; YP_511008.1, structural g | 3e-05 | |
| 3n58_A | 464 | Adenosylhomocysteinase; ssgcid, hydrolase, structu | 4e-05 | |
| 1leh_A | 364 | Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi | 5e-05 | |
| 1c1d_A | 355 | L-phenylalanine dehydrogenase; amino acid dehydrog | 6e-05 | |
| 3d64_A | 494 | Adenosylhomocysteinase; structural genomics, ssgci | 2e-04 | |
| 3aoe_E | 419 | Glutamate dehydrogenase; rossmann fold, NADH, oxid | 2e-04 | |
| 3aog_A | 440 | Glutamate dehydrogenase; NAD(H), oxidoreducta; HET | 2e-04 | |
| 1v9l_A | 421 | Glutamate dehydrogenase; protein-NAD complex, oxid | 2e-04 | |
| 3k92_A | 424 | NAD-GDH, NAD-specific glutamate dehydrogenase; ROC | 2e-04 | |
| 2yfq_A | 421 | Padgh, NAD-GDH, NAD-specific glutamate dehydrogena | 2e-04 | |
| 3mw9_A | 501 | GDH 1, glutamate dehydrogenase 1; allostery, inhib | 6e-04 | |
| 1v8b_A | 479 | Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2 | 9e-04 |
| >1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A* Length = 529 | Back alignment and structure |
|---|
Score = 665 bits (1718), Expect = 0.0
Identities = 185/535 (34%), Positives = 276/535 (51%), Gaps = 22/535 (4%)
Query: 89 PKPTILVSEKLGEAGLAILRSFGNVECLYDLSPEALCEKISQCDALIVRSGTKVTRSVFE 148
P +L+++KL + +A L V + + L + + DAL+VRS T V V
Sbjct: 3 SLPVVLIADKLAPSTVAALGDQVEVRWVDGPDRDKLLAAVPEADALLVRSATTVDAEVLA 62
Query: 149 AANGKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQA 208
AA KLK+V RAGVG+DNVD+ AAT G LVVNAP +N +AAEH +ALL + +R + A
Sbjct: 63 AAP-KLKIVARAGVGLDNVDVDAATARGVLVVNAPTSNIHSAAEHALALLLAASRQIPAA 121
Query: 209 DASIKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKAR 268
DAS++ W RS + G + GKT+ V+G G++G VA+R G V+A+DPY +A
Sbjct: 122 DASLREHTWKRSSFSGTEIFGKTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPYVSPARAA 181
Query: 269 AVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEA 328
+G+EL+S D LA ADFIS+H+P P T+ + + E AK K GV IVN ARGG++DE A
Sbjct: 182 QLGIELLSLDDLLARADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAARGGLVDEAA 241
Query: 329 LVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKEAQEGVAIEIAEAV 388
L A+ G V A LDVF EP DS L + V VTPHLGAST EAQ+ ++AE+V
Sbjct: 242 LADAITGGHVRAAGLDVFATEPC-TDSPLFELAQVVVTPHLGASTAEAQDRAGTDVAESV 300
Query: 389 VGALRGELSATAINAPMVPSEVLSELAPYVVLAKKLGRLAVQLVSGGSGIKSVKLIYRSA 448
AL GE A+N V E+AP++ L +KLG LA L S+ + R
Sbjct: 301 RLALAGEFVPDAVNVGGG--VVNEEVAPWLDLVRKLGVLAGVLS--DELPVSLSVQVRG- 355
Query: 449 RDPDDLDTRILRAMITKGIIEPISASFINLVNADFTAKQKGLRISEERVVADSSPEFPID 508
+ + +LR +G+ + + VNA A ++G+ + SP
Sbjct: 356 -ELAAEEVEVLRLSALRGLFSAVIEDAVTFVNAPALAAERGVTAEICKA--SESPNHR-S 411
Query: 509 SIQVQLSNVDSKFAAAVSENGEISIEGKV--KFGIPHLTRVGSFGVDASLEGNLILCRQV 566
+ V+ ++ +++ G + + ++ D +G ++ V
Sbjct: 412 VVDVRAVG---------ADGSVVTVSGTLYGPQLSQKIVQINGRHFDLRAQGINLIIHYV 462
Query: 567 DQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDEEPNQDSLKEIGKV 621
D+PG +GK+G +LG VN+ + + + +D++ D I
Sbjct: 463 DRPGALGKIGTLLGTAGVNIQAAQLSEDAEGPGATILLRLDQDVPDDVRTAIAAA 517
|
| >1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii} Length = 307 | Back alignment and structure |
|---|
Score = 494 bits (1275), Expect = e-173
Identities = 129/307 (42%), Positives = 195/307 (63%), Gaps = 2/307 (0%)
Query: 89 PKPTILVSEKLGEAGLAILRSFG-NVECLYDLSPEALCEKISQCDALIVRSGTKVTRSVF 147
+ +LV+ L E + +L+ G V + L E + +A+IVRS KVTR V
Sbjct: 2 KRMKVLVAAPLHEKAIQVLKDAGLEVIYEEYPDEDRLVELVKDVEAIIVRSKPKVTRRVI 61
Query: 148 EAANGKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQ 207
E+A KLKV+ RAGVG+DN+D++AA E G VVNAP A++ + AE + L+ S+AR ++
Sbjct: 62 ESAP-KLKVIARAGVGLDNIDVEAAKEKGIEVVNAPAASSRSVAELAVGLMFSVARKIAF 120
Query: 208 ADASIKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKA 267
AD ++ G W + + +G+ L GKT+ ++GFG++G +VA+ A LGMN++ +DPY ++A
Sbjct: 121 ADRKMREGVWAKKEAMGIELEGKTIGIIGFGRIGYQVAKIANALGMNILLYDPYPNEERA 180
Query: 268 RAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEE 327
+ V + V + L +D +++H+PL +T + N+E MKK ++N +RG V+D
Sbjct: 181 KEVNGKFVDLETLLKESDVVTIHVPLVESTYHLINEERLKLMKKTAILINTSRGPVVDTN 240
Query: 328 ALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKEAQEGVAIEIAEA 387
ALV+AL G +A A LDVF EEP KD L + +NV +TPH+GAST EAQE +E+AE
Sbjct: 241 ALVKALKEGWIAGAGLDVFEEEPLPKDHPLTKFDNVVLTPHIGASTVEAQERAGVEVAEK 300
Query: 388 VVGALRG 394
VV L+G
Sbjct: 301 VVKILKG 307
|
| >2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens} Length = 335 | Back alignment and structure |
|---|
Score = 491 bits (1266), Expect = e-172
Identities = 152/315 (48%), Positives = 203/315 (64%), Gaps = 3/315 (0%)
Query: 82 LNVQAVTPKPTILVSEKLGEAGLAILRSFG-NVECLYDLSPEALCEKISQCDALIVRSGT 140
L Q++ +L+S+ L IL+ G V +LS E L ++ C+ LIVRS T
Sbjct: 18 LYFQSMANLRKVLISDSLDPCCRKILQDGGLQVVEKQNLSKEELIAELQDCEGLIVRSAT 77
Query: 141 KVTRSVFEAANGKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLAS 200
KVT V AA KL+VVGRAG G+DNVDL+AAT G LV+N P N+++AAE ++
Sbjct: 78 KVTADVINAA-EKLQVVGRAGTGVDNVDLEAATRKGILVMNTPNGNSLSAAELTCGMIMC 136
Query: 201 MARNVSQADASIKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDP 260
+AR + QA AS+K GKW R K++G L GKTL ++G G++G EVA R + GM I +DP
Sbjct: 137 LARQIPQATASMKDGKWERKKFMGTELNGKTLGILGLGRIGREVATRMQSFGMKTIGYDP 196
Query: 261 YAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVAR 320
+ + + GV+ + ++ DFI++H PL P+T+ + ND TFA+ KKGVR+VN AR
Sbjct: 197 IISPEVSASFGVQQLPLEEIWPLCDFITVHTPLLPSTTGLLNDNTFAQCKKGVRVVNCAR 256
Query: 321 GGVIDEEALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKEAQEGV 380
GG++DE AL+RAL SG A AALDVFTEEPP +D LV HENV PHLGASTKEAQ
Sbjct: 257 GGIVDEGALLRALQSGQCAGAALDVFTEEPP-RDRALVDHENVISCPHLGASTKEAQSRC 315
Query: 381 AIEIAEAVVGALRGE 395
EIA V ++G+
Sbjct: 316 GEEIAVQFVDMVKGK 330
|
| >3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus} Length = 416 | Back alignment and structure |
|---|
Score = 484 bits (1249), Expect = e-168
Identities = 114/370 (30%), Positives = 179/370 (48%), Gaps = 14/370 (3%)
Query: 88 TPKPTILVSEKLGEAGLAILRSFGNVECLY---DLSPEALCEKISQCDALIVRSGTKVTR 144
+ +L+ E + + + +S G + L L + IS + +RS T++T
Sbjct: 13 RDRINVLLLEGISQTAVEYFKSSGYTNVTHLPKALDKADLIKAISSAHIIGIRSRTQLTE 72
Query: 145 SVFEAANGKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARN 204
+F AAN +L VG VG + V+L+AA + G V NAP +NT + AE I + + R
Sbjct: 73 EIFAAAN-RLIAVGCFSVGTNQVELKAARKRGIPVFNAPFSNTRSVAELVIGEIIMLMRR 131
Query: 205 VSQADASIKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPA 264
+ S AG W ++ + GKTL ++G+G +GS+V A+ LGM V +D
Sbjct: 132 IFPRSVSAHAGGWEKTAIGSREVRGKTLGIVGYGNIGSQVGNLAESLGMTVRYYDTSDKL 191
Query: 265 DKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVI 324
S D+ L T+D +SLH+P + +TSK+ + KMKKG ++N ARG +
Sbjct: 192 QYGNV--KPAASLDELLKTSDVVSLHVPSSKSTSKLITEAKLRKMKKGAFLINNARGSDV 249
Query: 325 DEEALVRALDSGVVAQAALDVFTEEPPAK----DSKLVQHENVTVTPHLGASTKEAQEGV 380
D EAL + L G +A AA+DVF EP + + L ENV +TPH+G ST+EAQE +
Sbjct: 250 DLEALAKVLQEGHLAGAAIDVFPVEPASNGERFSTPLQGLENVILTPHIGGSTEEAQERI 309
Query: 381 AIEIAEAVVGALRGELSATAINAPMVPSEVLSELAPYVVLAKKLGRLAVQLVS----GGS 436
E+ +V + A+N P V ++ + + + L++
Sbjct: 310 GTEVTRKLVEYSDVGSTVGAVNFPQVQLPPRPTGTRFMHVHENRPGILNSLMNVFSHHHI 369
Query: 437 GIKSVKLIYR 446
I S L
Sbjct: 370 NIASQFLQTD 379
|
| >2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii} Length = 333 | Back alignment and structure |
|---|
Score = 465 bits (1200), Expect = e-162
Identities = 94/331 (28%), Positives = 156/331 (47%), Gaps = 8/331 (2%)
Query: 90 KPTILVSEKLGEAGLAILRSFGNVECLYDLSPEALCEKISQCDALIVRSGTKVTRSVFEA 149
+P + V K+ L L+ + +VE + S E L I + D +IV TK+TR V E
Sbjct: 2 RPKVGVLLKMKREALEELKKYADVEIILYPSGEELKGVIGRFDGIIVSPTTKITREVLEN 61
Query: 150 ANGKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQAD 209
A +LKV+ G DN+DL+ AT+ G V + A AE + L+ ++ R + AD
Sbjct: 62 AE-RLKVISCHSAGYDNIDLEEATKRGIYVTKVSGLLSEAVAEFTVGLIINLMRKIHYAD 120
Query: 210 ASIKAGKWLRSKYVGVS------LVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAP 263
I+ G+W + L GK + ++G G +G +ARR G+ + +
Sbjct: 121 KFIRRGEWESHAKIWTGFKRIESLYGKKVGILGMGAIGKAIARRLIPFGVKLYYWSRHRK 180
Query: 264 ADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGV 323
+ + + + D+ L +D + L +PL T I N+E K++ G +VN+ RG +
Sbjct: 181 VNVEKELKARYMDIDELLEKSDIVILALPLTRDTYHIINEERVKKLE-GKYLVNIGRGAL 239
Query: 324 IDEEALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKEAQEGVAIE 383
+DE+A+ A+ G + A DVF +EP + +TPH EAQE V
Sbjct: 240 VDEKAVTEAIKQGKLKGYATDVFEKEPVREHELFKYEWETVLTPHYAGLALEAQEDVGFR 299
Query: 384 IAEAVVGALRGELSATAINAPMVPSEVLSEL 414
E ++ LRGE+ +N ++ + +
Sbjct: 300 AVENLLKVLRGEVPEDLVNKEVLEVRPIENV 330
|
| >2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii} Length = 313 | Back alignment and structure |
|---|
Score = 462 bits (1191), Expect = e-161
Identities = 110/306 (35%), Positives = 176/306 (57%), Gaps = 6/306 (1%)
Query: 93 ILVSEKLGEAGLAILRSFG-NVECLYDLSPEALCEKISQCDALIVRSGTKVTRSVFEAAN 151
L+++ + E + LR G V+ + ++S E L I D ++VRS TKVT+ V E
Sbjct: 8 ALITDPIDEILIKTLREKGIQVDYMPEISKEELLNIIGNYDIIVVRSRTKVTKDVIEKG- 66
Query: 152 GKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADAS 211
KLK++ RAG+G+DN+D + A + VV AP A+T +A E I L+ + AR + + A
Sbjct: 67 KKLKIIARAGIGLDNIDTEEAEKRNIKVVYAPGASTDSAVELTIGLMIAAARKMYTSMAL 126
Query: 212 IKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVG 271
K+G + K G+ L GKT+ ++GFG++G++V A +GM V+A+D +KA +
Sbjct: 127 AKSGIF--KKIEGLELAGKTIGIVGFGRIGTKVGIIANAMGMKVLAYDILDIREKAEKIN 184
Query: 272 VELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVR 331
+ VS ++ L +D ISLH+ ++ I + F MK V IVN +R ++ +AL+
Sbjct: 185 AKAVSLEELLKNSDVISLHVTVSKDAKPIIDYPQFELMKDNVIIVNTSRAVAVNGKALLD 244
Query: 332 ALDSGVVAQAALDVFTEEPPAKD--SKLVQHENVTVTPHLGASTKEAQEGVAIEIAEAVV 389
+ G V A DVF EPP ++ +L++HE V VT H+GA TKEAQ+ VA + ++
Sbjct: 245 YIKKGKVYAYATDVFWNEPPKEEWELELLKHERVIVTTHIGAQTKEAQKRVAEMTTQNLL 304
Query: 390 GALRGE 395
A++
Sbjct: 305 NAMKEL 310
|
| >1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A* Length = 404 | Back alignment and structure |
|---|
Score = 450 bits (1161), Expect = e-155
Identities = 117/400 (29%), Positives = 187/400 (46%), Gaps = 26/400 (6%)
Query: 90 KPTILVSEKLGEAGLAILRSFGNVECLY---DLSPEALCEKISQCDALIVRSGTKVTRSV 146
K L+ E + + L LR+ G + L E L E I + +RS T +T V
Sbjct: 4 KIKFLLVEGVHQKALESLRAAGYTNIEFHKGALDDEQLKESIRDAHFIGLRSRTHLTEDV 63
Query: 147 FEAANGKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVS 206
AA KL +G +G + VDL AA + G V NAP +NT + AE I L + R V
Sbjct: 64 INAAE-KLVAIGAFAIGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGELLLLLRGVP 122
Query: 207 QADASIKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADK 266
+A+A G + GK L ++G+G +G+++ A+ LGM V +D
Sbjct: 123 EANAKAHRGVGNKLAAGSFEARGKKLGIIGYGHIGTQLGILAESLGMYVYFYDIE--NKL 180
Query: 267 ARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDE 326
++ L +D +SLH+P NP+T + + + MK G ++N +RG V+D
Sbjct: 181 PLGNATQVQHLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVVDI 240
Query: 327 EALVRALDSGVVAQAALDVFTEEPPAKD----SKLVQHENVTVTPHLGASTKEAQEGVAI 382
AL AL S +A AA+DVF EP S L + +NV +TPH+G ST+EAQE + +
Sbjct: 241 PALADALASKHLAGAAIDVFPTEPATNSDPFTSPLAEFDNVLLTPHIGGSTQEAQENIGL 300
Query: 383 EIAEAVVGALRGELSATAINAPMVPSE--------VLSELAPYV------VLAKKLGRLA 428
E+A ++ + +A+N P V + E P V + A++ +A
Sbjct: 301 EVAGKLIKYSDNGSTLSAVNFPEVSLPLHGGRRLMHIHENRPGVLTALNKIFAEQGVNIA 360
Query: 429 VQLVSGGSGIKSVKLIYRSARDPDDLDTRILRAMITKGII 468
Q + + + V + + D + + ++A+ G I
Sbjct: 361 AQYLQTSAQMGYVVIDIEADEDVAEKALQAMKAI--PGTI 398
|
| >1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A* Length = 347 | Back alignment and structure |
|---|
Score = 447 bits (1153), Expect = e-154
Identities = 92/327 (28%), Positives = 158/327 (48%), Gaps = 12/327 (3%)
Query: 88 TPKPTILVSEKL-GEAGLAILRSFGNVECLYDLSPEALCEKI-SQCDALIVRSGTKVTRS 145
+ P + + + + IL+ V S + + EK+ ++ ++ +TR
Sbjct: 19 SHMPLVALLDGRDCTVEMPILKDVATVAFCDAQSTQEIHEKVLNEAVGALMYHTITLTRE 78
Query: 146 VFEAANGKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNV 205
E L+++ R G G DN+D+++A + G V N P A+ A+ + + ++ R
Sbjct: 79 DLEKFK-ALRIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASVEETADSTLCHILNLYRRA 137
Query: 206 SQADASIKAGKWLRS-------KYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAH 258
+ +++ G ++S + G+TL ++G G+VG VA RAK G NV+ +
Sbjct: 138 TWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLGRVGQAVALRAKAFGFNVLFY 197
Query: 259 DPYAPADKARAVGVELVS-FDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVN 317
DPY RA+G++ VS L +D ++LH LN + ND T +M++G +VN
Sbjct: 198 DPYLSDGVERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVN 257
Query: 318 VARGGVIDEEALVRALDSGVVAQAALDVFTEEPP-AKDSKLVQHENVTVTPHLGASTKEA 376
ARGG++DE+AL +AL G + AALDV EP L N+ TPH +++A
Sbjct: 258 TARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFSQGPLKDAPNLICTPHAAWYSEQA 317
Query: 377 QEGVAIEIAEAVVGALRGELSATAINA 403
+ E A + A+ G + + N
Sbjct: 318 SIEMREEAAREIRRAITGRIPDSLKNC 344
|
| >3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A Length = 351 | Back alignment and structure |
|---|
Score = 419 bits (1079), Expect = e-143
Identities = 94/339 (27%), Positives = 151/339 (44%), Gaps = 15/339 (4%)
Query: 85 QAVTPKPTILVSEKLGEAGLA-ILRSFGN---VECLYDLSPEALCEKISQCDALIVRSG- 139
+ T P L + G+ L S G+ V + L + I LI
Sbjct: 14 EYATKNPNFLGCVE-NALGIRDWLESQGHQYIVTDDKEGPDCELEKHIPDLHVLISTPFH 72
Query: 140 -TKVTRSVFEAANGKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALL 198
VT + A LK++ AG+G D++DLQAA G V +N V+ AE + +
Sbjct: 73 PAYVTAERIKKA-KNLKLLLTAGIGSDHIDLQAAAAAGLTVAEVTGSNVVSVAEDELMRI 131
Query: 199 ASMARNVSQADASIKAGKWLRS--KYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVI 256
+ RN + G+W + Y L GKT+ +G G++G + +R K G N++
Sbjct: 132 LILMRNFVPGYNQVVKGEWNVAGIAYRAYDLEGKTIGTVGAGRIGKLLLQRLKPFGCNLL 191
Query: 257 AHDPYA-PADKARAVGVELV-SFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVR 314
HD + + G + V ++ L D I ++MPL T +FN E K+KKGV
Sbjct: 192 YHDRLQMAPELEKETGAKFVEDLNEMLPKCDVIVINMPLTEKTRGMFNKELIGKLKKGVL 251
Query: 315 IVNVARGGVIDEEALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTK 374
IVN ARG +++ +A+V A++SG + + DV+ +P KD N +TPH +T
Sbjct: 252 IVNNARGAIMERQAVVDAVESGHIGGYSGDVWDPQPAPKDHPWRYMPNQAMTPHTSGTTI 311
Query: 375 EAQEGVAIEIAEAVVGALRGELSATA---INAPMVPSEV 410
+AQ A + + +GE T + + +
Sbjct: 312 DAQLRYAAGTKDMLERYFKGEDFPTENYIVKDGELAPQY 350
|
| >2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A Length = 364 | Back alignment and structure |
|---|
Score = 418 bits (1076), Expect = e-143
Identities = 86/350 (24%), Positives = 145/350 (41%), Gaps = 22/350 (6%)
Query: 88 TPKPTILVSEKLGEAGLAILRSFGNVECLYDLSPEALCEKISQCDALIVRS--GTKVTRS 145
+ + ++ L + G ++ + L + I D +I +T+
Sbjct: 23 CTENKLGIANWLKDQGHELI-----TTSDKEGGNSVLDQHIPDADIIITTPFHPAYITKE 77
Query: 146 VFEAANGKLKVVGRAGVGIDNVDLQAATEFGC--LVVNAPIANTVAAAEHGIALLASMAR 203
+ A KLK+V AGVG D++DL + G V+ +N V+ AEH + + + R
Sbjct: 78 RIDKAK-KLKLVVVAGVGSDHIDLDYINQTGKKISVLEVTGSNVVSVAEHVVMTMLVLVR 136
Query: 204 NVSQADASIKAGKWLRSKYV--GVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPY 261
N A I W + + GKT+A +G G++G V R + + Y
Sbjct: 137 NFVPAHEQIINHDWEVAAIAKDAYDIEGKTIATIGAGRIGYRVLERLVPFNPKELLYYDY 196
Query: 262 A--PADKARAVGVELV-SFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNV 318
P D VG V + ++ +A AD ++++ PL+ T + N E +K KKG +VN
Sbjct: 197 QALPKDAEEKVGARRVENIEELVAQADIVTVNAPLHAGTKGLINKELLSKFKKGAWLVNT 256
Query: 319 ARGGVIDEEALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVT-----VTPHLGAST 373
ARG + E + AL+SG + DV+ +P KD N +TPH +T
Sbjct: 257 ARGAICVAEDVAAALESGQLRGYGGDVWFPQPAPKDHPWRDMRNKYGAGNAMTPHYSGTT 316
Query: 374 KEAQEGVAIEIAEAVVGALRGELSATAINAPMVPSEVLSELAPYVVLAKK 423
+AQ A + G+ + ++ E ++ Y KK
Sbjct: 317 LDAQTRYAQGTVNILESFFTGKFDYRPQDIILLNGEYGTK--AYGKHDKK 364
|
| >2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa} Length = 380 | Back alignment and structure |
|---|
Score = 401 bits (1032), Expect = e-136
Identities = 93/389 (23%), Positives = 153/389 (39%), Gaps = 50/389 (12%)
Query: 94 LVSEKLGEAGLAILRSFGNVECLYDLSPEALCEKISQCDALIVRSGTKVTRSVFEAANGK 153
+++++ A G++ L +++ D L+VRS T+V+R+ +
Sbjct: 3 ILADENIPVVDAFFADQGSIRRLPGR--AIDRAALAEVDVLLVRSVTEVSRAALAGS--P 58
Query: 154 LKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIK 213
++ VG +G D++DL E G +AP N ++ + L +MA
Sbjct: 59 VRFVGTCTIGTDHLDLDYFAEAGIAWSSAPGCNARGVVDYVLGCLLAMAE---------- 108
Query: 214 AGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVE 273
G L +T V+G G+VG + +GLG V+ DP +AR E
Sbjct: 109 --------VRGADLAERTYGVVGAGQVGGRLVEVLRGLGWKVLVCDPPR---QAREPDGE 157
Query: 274 LVSFDQALATADFISLHMPLNPT----TSKIFNDETFAKMKKGVRIVNVARGGVIDEEAL 329
VS ++ LA AD ISLH PLN T + ++ A ++ G +VN +RG V+D +AL
Sbjct: 158 FVSLERLLAEADVISLHTPLNRDGEHPTRHLLDEPRLAALRPGTWLVNASRGAVVDNQAL 217
Query: 330 VRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKEAQEGVAIEIAEAVV 389
R L+ G + ALDV+ EP + + TPH+ + E + +I +A
Sbjct: 218 RRLLEGGADLEVALDVWEGEPQ--ADPELAARCLIATPHIAGYSLEGKLRGTAQIYQAYC 275
Query: 390 GALRGELSATAINAPMVPSEVLSELAPYVVLAKKLGRLAVQLVSGGSGIKSVKLIYRSAR 449
+ + +L P A L L +Y
Sbjct: 276 AWRGIAERVSLQDVLPETWLAGLQLNPGCDPAWALATLCRA-------------VYDPRS 322
Query: 450 DPDDLDTRILRAMITKGIIEPISASFINL 478
D D R++ A+F L
Sbjct: 323 D----DAAFRRSLTGDSATRR--AAFDAL 345
|
| >3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum} Length = 352 | Back alignment and structure |
|---|
Score = 399 bits (1028), Expect = e-136
Identities = 93/348 (26%), Positives = 160/348 (45%), Gaps = 25/348 (7%)
Query: 93 ILVS----EKLGEAGLAILRSFGNVECLYD--LSPEALCEKISQCDALI-VRSGTKVTRS 145
I V + + + L V+ + L +++ +AL+ +R T+VTR
Sbjct: 5 IAVLDDYQDAVRKLDCFSLLQDHEVKVFNNTVKGVGQLAARVADVEALVLIRERTRVTRQ 64
Query: 146 VFEAANGKLKVVGRAGV----GIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASM 201
+ + KLK++ + G ++DL+A T+ G +V+ + VA AE AL+ +
Sbjct: 65 LLDRLP-KLKIISQTGRVSRDAGGHIDLEACTDKGVVVLEGK-GSPVAPAELTWALVMAA 122
Query: 202 ARNVSQADASIKAGKWLRSKY----------VGVSLVGKTLAVMGFGKVGSEVARRAKGL 251
R + Q AS+K G W +S +G L G+TL + G+GK+G VA +
Sbjct: 123 QRRIPQYVASLKHGAWQQSGLKSTTMPPNFGIGRVLKGQTLGIFGYGKIGQLVAGYGRAF 182
Query: 252 GMNVIAHDPYAPADKARAVGVELV-SFDQALATADFISLHMPLNPTTSKIFNDETFAKMK 310
GMNV+ ++ARA G + S D +D +S+H+ LN T I +MK
Sbjct: 183 GMNVLVWGRENSKERARADGFAVAESKDALFEQSDVLSVHLRLNDETRSIITVADLTRMK 242
Query: 311 KGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLG 370
VN +R +++E +V AL+ G AA+DVF EP + L++ EN TPH+G
Sbjct: 243 PTALFVNTSRAELVEENGMVTALNRGRPGMAAIDVFETEPILQGHTLLRMENCICTPHIG 302
Query: 371 ASTKEAQEGVAIEIAEAVVGALRGELSATAINAPMVPSEVLSELAPYV 418
+E+ E + ++ L+G + + N + ++ +
Sbjct: 303 YVERESYEMYFGIAFQNILDILQGNVD-SVANPTALAPALIRAEGHHH 349
|
| >2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A Length = 393 | Back alignment and structure |
|---|
Score = 400 bits (1030), Expect = e-135
Identities = 89/343 (25%), Positives = 145/343 (42%), Gaps = 13/343 (3%)
Query: 83 NVQAVTPKPTILVSEKLGEAGLA-ILRSFGN---VECLYDLSPEALCEKISQCDALIVRS 138
+A+ P L+ GE GL L S G+ V D ++ D +I +
Sbjct: 38 TPKAIDFTPGQLLGSVSGELGLRKYLESNGHTLVVTSDKDGPDSVFERELVDADVVISQP 97
Query: 139 G--TKVTRSVFEAANGKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIA 196
+T A LK+ AG+G D+VDLQ+A + V N+++ AEH +
Sbjct: 98 FWPAYLTPERIAKAK-NLKLALTAGIGSDHVDLQSAIDRNVTVAEVTYCNSISVAEHVVM 156
Query: 197 LLASMARNVSQADASIKAGKWLRSKYV--GVSLVGKTLAVMGFGKVGSEVARRAKGLGMN 254
++ S+ RN + + G W + V L + + G++G V RR ++
Sbjct: 157 MILSLVRNYLPSHEWARKGGWNIADCVSHAYDLEAMHVGTVAAGRIGLAVLRRLAPFDVH 216
Query: 255 VIAHDPY-APADKARAVGVEL-VSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKG 312
+ D + P + + + + + D ++L+ PL+P T + NDET K+G
Sbjct: 217 LHYTDRHRLPESVEKELNLTWHATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKRG 276
Query: 313 VRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGAS 372
IVN ARG + D +A+ RAL+SG +A A DV+ +P KD +TPH+ +
Sbjct: 277 AYIVNTARGKLCDRDAVARALESGRLAGYAGDVWFPQPAPKDHPWRTMPYNGMTPHISGT 336
Query: 373 TKEAQEGVAIEIAEAVVGALRGELSATAINAPMVPSEVLSELA 415
T AQ A E + G +V L+
Sbjct: 337 TLTAQARYAAGTREILECFFEGRPIRDEYL--IVQGGALAGTG 377
|
| >3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum} Length = 290 | Back alignment and structure |
|---|
Score = 391 bits (1006), Expect = e-133
Identities = 73/279 (26%), Positives = 122/279 (43%), Gaps = 15/279 (5%)
Query: 122 EALCEKISQCDALIVR----SGTKVTRSVFEAANGKLKVVGRAGVGIDNVDLQAATEFGC 177
E + D + +V + + + K++ G+D++D+ E
Sbjct: 15 EIAKTVLDGFDLHWYPDYYDAEAQVIKDRYVLGK-RTKMIQAISAGVDHIDVNGIPENVV 73
Query: 178 LVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGKTLAVMGF 237
L NA A +++ AEH ALL + A+N+ + + +KAG + +S L GK L ++G+
Sbjct: 74 LCSNAG-AYSISVAEHAFALLLAHAKNILENNELMKAGIFRQSP--TTLLYGKALGILGY 130
Query: 238 GKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTT 297
G +G VA AK GM VIA+ + V S +DF+ + +PL T
Sbjct: 131 GGIGRRVAHLAKAFGMRVIAYTRSSVDQNV---DVISESPADLFRQSDFVLIAIPLTDKT 187
Query: 298 SKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEEPPAKDSKL 357
+ N A +K + IVNVAR V+ + ++ L DV+ EP ++ L
Sbjct: 188 RGMVNSRLLANARKNLTIVNVARADVVSKPDMIGFLKERSDVWYLSDVWWNEPEITETNL 247
Query: 358 VQHENVTVTPHLGASTKEAQEGVAIEIA-EAVVGALRGE 395
N ++PH+ +AI++A E V GE
Sbjct: 248 ---RNAILSPHVAGGMSGEIMDIAIQLAFENVRNFFEGE 283
|
| >3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp} Length = 381 | Back alignment and structure |
|---|
Score = 383 bits (986), Expect = e-129
Identities = 87/366 (23%), Positives = 145/366 (39%), Gaps = 46/366 (12%)
Query: 93 ILVSEKLGEAGLAILRSFGNVECLYDLSPEALCEKISQCDALIVRSGTKVTRSVFEAANG 152
ILV E + + G V+ E+++ DAL+VRS TKV S+
Sbjct: 6 ILVDENM-PYARELFSRLGEVK--AVPGRPIPVEELNHADALMVRSVTKVNESLLSGTP- 61
Query: 153 KLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASI 212
+ VG A G D+VD + G AP N +A E+ + L +A
Sbjct: 62 -INFVGTATAGTDHVDEAWLKQAGIGFSAAPGCNAIAVVEYVFSALLMLAERD------- 113
Query: 213 KAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGV 272
G SL +T+ ++G G VGS + R + LG+ + DP AR
Sbjct: 114 -----------GFSLRDRTIGIVGVGNVGSRLQTRLEALGIRTLLCDPPR---AARGDEG 159
Query: 273 ELVSFDQALATADFISLHMPLNPT----TSKIFNDETFAKMKKGVRIVNVARGGVIDEEA 328
+ + D+ + AD ++ H PL T + ++ ++K G ++N RG V+D A
Sbjct: 160 DFRTLDELVQEADVLTFHTPLYKDGPYKTLHLADETLIRRLKPGAILINACRGPVVDNAA 219
Query: 329 LVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKEAQEGVAIEIAEAV 388
L+ L++G LDV+ EP + L++ ++ T H+ T E + ++ EA
Sbjct: 220 LLARLNAGQPLSVVLDVWEGEPD-LNVALLEAVDI-GTSHIAGYTLEGKARGTTQVFEAY 277
Query: 389 VGALRGELSATAINAPMVPSEVLSELAPYVVLAKKLGRLAVQLVSGGSGIKSVKLIYRSA 448
+ E ++P+ + + L + + LV Y
Sbjct: 278 SAFIGREQRVALET--LLPAPEFGRITLHGPLDQPTLKRLAHLV------------YDVR 323
Query: 449 RDPDDL 454
RD L
Sbjct: 324 RDDAPL 329
|
| >4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A* Length = 330 | Back alignment and structure |
|---|
Score = 371 bits (956), Expect = e-125
Identities = 92/328 (28%), Positives = 157/328 (47%), Gaps = 14/328 (4%)
Query: 90 KPTILVSEKLGEAGLAILRSFGNVECLYD---LSPEALCEKISQCDALIVRSGTKVTRSV 146
P ++++ ++ E L +L + L+ E + + A++ +V
Sbjct: 2 LPKLVITHRVHEEILQLLAPHCELITNQTDSTLTREEILRRCRDAQAMMAFMPDRVDADF 61
Query: 147 FEAANGKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVS 206
+A +L+V+G A G DN D+ A T G + P TV AE I L + R++
Sbjct: 62 LQAC-PELRVIGCALKGFDNFDVDACTARGVWLTFVPDLLTVPTAELAIGLAVGLGRHLR 120
Query: 207 QADASIKAGKW--LRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA-P 263
ADA +++GK+ + ++ G L T+ +G G +G +A R +G G + H+ A
Sbjct: 121 AADAFVRSGKFRGWQPRFYGTGLDNATVGFLGMGAIGLAMADRLQGWGATLQYHEAKALD 180
Query: 264 ADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGV 323
+ +G+ V+ + A++DFI L +PLN T + N E A ++ G +VN RG V
Sbjct: 181 TQTEQRLGLRQVACSELFASSDFILLALPLNADTLHLVNAELLALVRPGALLVNPCRGSV 240
Query: 324 IDEEALVRALDSGVVAQAALDVFTEE-------PPAKDSKLVQHENVTVTPHLGASTKEA 376
+DE A++ AL+ G + A DVF E P D L+ H N TPH+G++ +
Sbjct: 241 VDEAAVLAALERGQLGGYAADVFEMEDWARADRPQQIDPALLAHPNTLFTPHIGSAVRAV 300
Query: 377 QEGVAIEIAEAVVGALRGELSATAINAP 404
+ + A+ ++ AL GE A+N
Sbjct: 301 RLEIERCAAQNILQALAGERPINAVNRL 328
|
| >2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A* Length = 334 | Back alignment and structure |
|---|
Score = 358 bits (922), Expect = e-120
Identities = 112/339 (33%), Positives = 187/339 (55%), Gaps = 17/339 (5%)
Query: 90 KPTILVSEKLGEAGLAILRSFGNVECLYD---LSPEALCEKISQCDALIVRSGTKVTRSV 146
KP + ++ ++ E G+ +L VE D + E L +K+ + DAL+ ++ + V
Sbjct: 2 KPKVFITREIPEVGIKMLEDEFEVEVWGDEKEIPREILLKKVKEVDALVTMLSERIDKEV 61
Query: 147 FEAANGKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVS 206
FE A KL++V VG DN+D++ AT+ G V N P T A A+ ALL + AR+V
Sbjct: 62 FENAP-KLRIVANYAVGYDNIDIEEATKRGIYVTNTPDVLTDATADLAFALLLATARHVV 120
Query: 207 QADASIKAGKWLRSK-------YVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHD 259
+ D +++G+W + ++G + GKT+ ++G G++G +A+RAKG M ++ +
Sbjct: 121 KGDRFVRSGEWKKRGVAWHPKWFLGYDVYGKTIGIIGLGRIGQAIAKRAKGFNMRILYYS 180
Query: 260 PYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVA 319
+ R + E + L +DF+ L +PL T + N+E MKK ++N+A
Sbjct: 181 RTRKEEVERELNAEFKPLEDLLRESDFVVLAVPLTRETYHLINEERLKLMKKTAILINIA 240
Query: 320 RGGVIDEEALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKEAQEG 379
RG V+D ALV+AL G +A A LDVF EEP + +L + +NV +TPH+G+++ A+EG
Sbjct: 241 RGKVVDTNALVKALKEGWIAGAGLDVFEEEPYY-NEELFKLDNVVLTPHIGSASFGAREG 299
Query: 380 VAIEIAEAVVGALRGELSATAINAPMVPSEVLSELAPYV 418
+A +A+ ++ RGE+ T +N EV+ P
Sbjct: 300 MAELVAKNLIAFKRGEIPPTLVNR-----EVIKIRKPGF 333
|
| >1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A* Length = 333 | Back alignment and structure |
|---|
Score = 340 bits (874), Expect = e-113
Identities = 81/304 (26%), Positives = 133/304 (43%), Gaps = 15/304 (4%)
Query: 113 VECLYDLSPEALCEKISQCDALIVRSGTKVTRSVFEA-ANGKLKVVGRAGVGIDNVDLQA 171
VE L D ++V +A A+ + + VG+DN+D+
Sbjct: 29 VEYTDKLLTPETVALAKGADGVVVYQQLDYIAETLQALADNGITKMSLRNVGVDNIDMAK 88
Query: 172 ATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGKT 231
A E G + N P+ + A AEH A + R D + + +G + +
Sbjct: 89 AKELGFQITNVPVYSPNAIAEHAAIQAARILRQDKAMDEKVARHDLRWAPTIGREVRDQV 148
Query: 232 LAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHM 291
+ V+G G +G + +G G VI +D + + G + S D AD ISLH+
Sbjct: 149 VGVVGTGHIGQVFMQIMEGFGAKVITYDIF-RNPELEKKGYYVDSLDDLYKQADVISLHV 207
Query: 292 PLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEEPP 351
P P + NDE+ AKMK+ V IVNV+RG ++D +A++R LDSG + A+DV+ E
Sbjct: 208 PDVPANVHMINDESIAKMKQDVVIVNVSRGPLVDTDAVIRGLDSGKIFGYAMDVYEGEVG 267
Query: 352 -------------AKDSKLVQHENVTVTPHLGASTKEAQEGVAIEIAEAVVGALRGELSA 398
A+ + L+ NV VTP T A + ++ + + + G+ +
Sbjct: 268 IFNEDWEGKEFPDARLADLIARPNVLVTPKTAFYTTHAVRNMVVKAFDNNLELVEGKEAE 327
Query: 399 TAIN 402
T +
Sbjct: 328 TPVK 331
|
| >1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1 Length = 333 | Back alignment and structure |
|---|
Score = 339 bits (872), Expect = e-112
Identities = 80/307 (26%), Positives = 132/307 (42%), Gaps = 17/307 (5%)
Query: 113 VECLYDLSPEALCEKISQCDALIVRSGTKVTRSVFEA-ANGKLKVVGRAGVGIDNVDLQA 171
+E + E E D + T VFE +K + VG DN+D+ A
Sbjct: 27 LEYHTEFLDENTVEWAKGFDGINSLQTTPYAAGVFEKMHAYGIKFLTIRNVGTDNIDMTA 86
Query: 172 ATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKW-LRSKYVGVSLVGK 230
++G + N P + A AE + + RN+ + A ++AG + ++G L +
Sbjct: 87 MKQYGIRLSNVPAYSPAAIAEFALTDTLYLLRNMGKVQAQLQAGDYEKAGTFIGKELGQQ 146
Query: 231 TLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLH 290
T+ VMG G +G + KG G VIA+DPY K + VS + +D I LH
Sbjct: 147 TVGVMGTGHIGQVAIKLFKGFGAKVIAYDPYP--MKGDHPDFDYVSLEDLFKQSDVIDLH 204
Query: 291 MPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEEP 350
+P + I N+ F MK G ++N AR +ID +A++ L SG +A +D + E
Sbjct: 205 VPGIEQNTHIINEAAFNLMKPGAIVINTARPNLIDTQAMLSNLKSGKLAGVGIDTYEYET 264
Query: 351 P-------------AKDSKLVQHENVTVTPHLGASTKEAQEGVAIEIAEAVVGALRGELS 397
+L+ NV ++PH+ T+ A + + +V L +
Sbjct: 265 EDLLNLAKHGSFKDPLWDELLGMPNVVLSPHIAYYTETAVHNMVYFSLQHLVDFLTKGET 324
Query: 398 ATAINAP 404
+T + P
Sbjct: 325 STEVTGP 331
|
| >1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans} Length = 331 | Back alignment and structure |
|---|
Score = 325 bits (835), Expect = e-107
Identities = 67/299 (22%), Positives = 119/299 (39%), Gaps = 18/299 (6%)
Query: 119 LSPEALCEKISQCDALIVRSGTKVTRSVFEA-ANGKLKVVGRAGVGIDNVDLQAATEFGC 177
L+ + E + DA+I+R + + +K + G D++D + A E G
Sbjct: 34 LNTKETAEMAAGFDAVILRGNCFANKQNLDIYKKLGVKYILTRTAGTDHIDKEYAKELGF 93
Query: 178 LVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSKY-VGVSLVGKTLAVMG 236
+ P + A AE + + R+ + + + + + T+ V+G
Sbjct: 94 PMAFVPRYSPNAIAELAVTQAMMLLRHTAYTTSRTAKKNFKVDAFMFSKEVRNCTVGVVG 153
Query: 237 FGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPT 296
G++G A+ G+G VI D + K VS D+ L +D I++H P
Sbjct: 154 LGRIGRVAAQIFHGMGATVIGEDVFE--IKGIEDYCTQVSLDEVLEKSDIITIHAPYIKE 211
Query: 297 TSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEEP------ 350
+ + KMK G +VN ARG ++D EA++ A++SG + DV E
Sbjct: 212 NGAVVTRDFLKKMKDGAILVNCARGQLVDTEAVIEAVESGKLGGYGCDVLDGEASVFGKD 271
Query: 351 --------PAKDSKLVQHENVTVTPHLGASTKEAQEGVAIEIAEAVVGALRGELSATAI 401
P + + + V +TPHLG+ T EA + + + + I
Sbjct: 272 LEGQKLENPLFEKLVDLYPRVLITPHLGSYTDEAVKNMVEVSYQNLKDLAETGDCPNKI 330
|
| >1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1 Length = 320 | Back alignment and structure |
|---|
Score = 322 bits (828), Expect = e-106
Identities = 95/314 (30%), Positives = 151/314 (48%), Gaps = 9/314 (2%)
Query: 90 KPTILVSEKLGEAGLAILRSFGNVECLYD---LSPEALCEKISQCDALIVRSGTKVTRSV 146
K IL++ L EA +A R +V D ++ + + E DAL++ K + V
Sbjct: 1 KKKILITWPLPEAAMARARESYDVIAHGDDPKITIDEMIETAKSVDALLITLNEKCRKEV 60
Query: 147 FEAANGKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVS 206
+ +K + +G D++DL A G V NAP TVA AE + LL AR
Sbjct: 61 IDRIPENIKCISTYSIGFDHIDLDACKARGIKVGNAPHGVTVATAEIAMLLLLGSARRAG 120
Query: 207 QADASIKAGKWLRSK---YVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPY-- 261
+ + I+ W + VG L KTL + GFG +G +A+RA+G M++ D +
Sbjct: 121 EGEKMIRTRSWPGWEPLELVGEKLDNKTLGIYGFGSIGQALAKRAQGFDMDIDYFDTHRA 180
Query: 262 APADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARG 321
+ +D+A S D L+ + F SL+ P P T FN T + +G +VN ARG
Sbjct: 181 SSSDEASYQATFHDSLDSLLSVSQFFSLNAPSTPETRYFFNKATIKSLPQGAIVVNTARG 240
Query: 322 GVIDEEALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKEAQEGVA 381
++D E +V AL++G +A A DVF EP + N + PH+G++ +A+E +A
Sbjct: 241 DLVDNELVVAALEAGRLAYAGFDVFAGEPNI-NEGYYDLPNTFLFPHIGSAATQAREDMA 299
Query: 382 IEIAEAVVGALRGE 395
+ + + G
Sbjct: 300 HQANDLIDALFGGA 313
|
| >2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus} Length = 311 | Back alignment and structure |
|---|
Score = 319 bits (821), Expect = e-105
Identities = 101/309 (32%), Positives = 153/309 (49%), Gaps = 13/309 (4%)
Query: 93 ILVSEKLGEAGLAILRSFGNVECLYD---LSPEALCEKISQCDALIVRSGTKVTRSVFEA 149
+LV+ L L LR G ++ L L +++ LI ++ V +
Sbjct: 3 VLVTRTLPGKALDRLRERGLEVEVHRGLFLPKAELLKRVEGAVGLIPTVEDRIDAEVMDR 62
Query: 150 ANGKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQAD 209
A LKV+ VG+D+VDL+AA E G V + P T A A+ +ALL ++AR V +
Sbjct: 63 A-KGLKVIACYSVGVDHVDLEAARERGIRVTHTPGVLTEATADLTLALLLAVARRVVEGA 121
Query: 210 ASIKAGKWLRSK---YVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADK 266
A + G W +G+ L G TL ++G G++G VA+RA GM V+ H
Sbjct: 122 AYARDGLWKAWHPELLLGLDLQGLTLGLVGMGRIGQAVAKRALAFGMRVVYHAR-----T 176
Query: 267 ARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDE 326
+ + +S ++ L AD +SLH PL P T ++ N E MK+G ++N ARG ++D
Sbjct: 177 PKPLPYPFLSLEELLKEADVVSLHTPLTPETHRLLNRERLFAMKRGAILLNTARGALVDT 236
Query: 327 EALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKEAQEGVAIEIAE 386
EALV AL G + A LDV EP L N +TPH+G++ + +E +A E
Sbjct: 237 EALVEAL-RGHLFGAGLDVTDPEPLPPGHPLYALPNAVITPHIGSAGRTTRERMAEVAVE 295
Query: 387 AVVGALRGE 395
++ L G
Sbjct: 296 NLLAVLEGR 304
|
| >1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1 Length = 303 | Back alignment and structure |
|---|
Score = 315 bits (810), Expect = e-103
Identities = 63/313 (20%), Positives = 113/313 (36%), Gaps = 22/313 (7%)
Query: 93 ILVSEKLGEAGLAILRSFGNVECLYDLSPEALCEKISQCDALIVRSGTKVTRSVFEAANG 152
+ V+ +L LR + + DL + +++T
Sbjct: 3 LYVNFELPPEAEEELRKYFKIVRGGDL------------GNVEAALVSRITAEELAKMP- 49
Query: 153 KLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASI 212
+LK + G+D++ ++ V +N A AE +ALL + + + Q +
Sbjct: 50 RLKFIQVVTAGLDHLPWESIPP-HVTVAGNAGSNADAVAEFALALLLAPYKRIIQYGEKM 108
Query: 213 KAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGV 272
K G + R + G+ +AV+G G++G+ V + LG V
Sbjct: 109 KRGDYGRDVE-IPLIQGEKVAVLGLGEIGTRVGKILAALGAQVRGFSRTPKEG----PWR 163
Query: 273 ELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRA 332
S ++AL A +PLN T + + A M + VNV R V+D + ++R
Sbjct: 164 FTNSLEEALREARAAVCALPLNKHTRGLVKYQHLALMAEDAVFVNVGRAEVLDRDGVLRI 223
Query: 333 LDSGVVAQAALDVFT-EEPPAKDSKLVQHENVTVTPHLGAST--KEAQEGVAIEIAEAVV 389
L A DV+ AKD++ NV TP + + + +E ++
Sbjct: 224 LKERPQFIFASDVWWGRNDFAKDAEFFSLPNVVATPWVAGGYGNERVWRQMVMEAVRNLI 283
Query: 390 GALRGELSATAIN 402
G
Sbjct: 284 TYATGGRPRNIAK 296
|
| >2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A Length = 330 | Back alignment and structure |
|---|
Score = 309 bits (794), Expect = e-101
Identities = 86/324 (26%), Positives = 150/324 (46%), Gaps = 9/324 (2%)
Query: 88 TPKPTILVSEKLGEAGLAILRSFGNVECLYD-----LSPEALCEKISQCDALIVRSGTKV 142
+ V+ ++ G L + E + + L ++ L+ V
Sbjct: 6 VRLMKVFVTRRIPAEGRVALARAADCEVEQWDSDEPIPAKELERGVAGAHGLLCLLSDHV 65
Query: 143 TRSVFEAANGKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMA 202
+ + +AA LKV+ VGID++ L + G V P T AE ++LL +
Sbjct: 66 DKRILDAAGANLKVISTMSVGIDHLALDEIKKRGIRVGYTPDVLTDTTAELAVSLLLTTC 125
Query: 203 RNVSQADASIKAGKWLRSK---YVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHD 259
R + +A +K G W K G L T+ ++G G++G +ARR K G+ +
Sbjct: 126 RRLPEAIEEVKNGGWTSWKPLWLCGYGLTQSTVGIIGLGRIGQAIARRLKPFGVQRFLYT 185
Query: 260 PYAP-ADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNV 318
P ++A E VS + A +DFI + L P T + N + F KMK+ +N+
Sbjct: 186 GRQPRPEEAAEFQAEFVSTPELAAQSDFIVVACSLTPATEGLCNKDFFQKMKETAVFINI 245
Query: 319 ARGGVIDEEALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKEAQE 378
+RG V++++ L +AL SG +A A LDV + EP + L+ +N + PH+G++T +
Sbjct: 246 SRGDVVNQDDLYQALASGKIAAAGLDVTSPEPLPTNHPLLTLKNCVILPHIGSATHRTRN 305
Query: 379 GVAIEIAEAVVGALRGELSATAIN 402
+++ A ++ LRGE + +
Sbjct: 306 TMSLLAANNLLAGLRGEPMPSELK 329
|
| >4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP} Length = 345 | Back alignment and structure |
|---|
Score = 293 bits (752), Expect = 2e-94
Identities = 78/320 (24%), Positives = 150/320 (46%), Gaps = 7/320 (2%)
Query: 89 PKPTILVSEKLGEAGLAILRSFGNVECLYD---LSPEALCEKISQCDALIVRSGTKVTRS 145
P + + A A LR ++E + L+P + + + L V + +T
Sbjct: 27 PIQKAFLCRRFTPAIEAELRQRFDLEVNLEDTVLTPSGIASRAHGAEVLFVTATEAITAE 86
Query: 146 VFEAANGKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNV 205
V LK + VG D++D+ AA G V++ P + A AE + L+ + R
Sbjct: 87 VIRKLQPGLKTIATLSVGYDHIDMAAARSLGIKVLHTPDVLSDACAEIAMLLVLNACRRG 146
Query: 206 SQADASIKAGKWLRSK---YVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA 262
+AD +++G W +G+ L G+ L + G G++G +A RA+G G+ + H+
Sbjct: 147 YEADRMVRSGSWPGWGPTQLLGMGLTGRRLGIFGMGRIGRAIATRARGFGLAIHYHNRTR 206
Query: 263 PADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGG 322
+ + + D L +D + P P + + AK+ +G ++N++RG
Sbjct: 207 LSHALEEGAIYHDTLDSLLGASDIFLIAAPGRPELKGFLDHDRIAKIPEGAVVINISRGD 266
Query: 323 VIDEEALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKEAQEGVAI 382
+I+++AL+ AL S + A LDVF EP D + +N+ +TPH+G++T E ++ +
Sbjct: 267 LINDDALIEALRSKHLFAAGLDVFANEPAI-DPRYRSLDNIFLTPHIGSATHETRDAMGW 325
Query: 383 EIAEAVVGALRGELSATAIN 402
+ + + + ++ I+
Sbjct: 326 LLIQGIEALNQSDVPDNLIS 345
|
| >2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B Length = 348 | Back alignment and structure |
|---|
Score = 291 bits (748), Expect = 9e-94
Identities = 91/345 (26%), Positives = 150/345 (43%), Gaps = 26/345 (7%)
Query: 89 PKPTILVS---EKLGEAGLAILRSFGNVECLYDLSPEALCE-----KISQCDALIVRSGT 140
P+P +L+ + + + + V + + + + +A+I +
Sbjct: 2 PRPRVLLLGDPARHLDDLWSDFQQKFEVIPANLTTHDGFKQALREKRYGDFEAIIKLAVE 61
Query: 141 KVTRS------VFEAANGKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHG 194
T S + LKV AG G D +DL A E G N+ A A ++
Sbjct: 62 NGTESYPWNADLISHLPSSLKVFAAAGAGFDWLDLDALNERGVAFANSRGAGDTATSDLA 121
Query: 195 IALLASMARNVSQADASIKAGKW-------LRSKYVGVSLVGKTLAVMGFGKVGSEVARR 247
+ L+ S+ R S ++ + + G L + G L +G G + E+AR+
Sbjct: 122 LYLILSVFRLASYSERAARTGDPETFNRVHLEIGKSAHNPRGHVLGAVGLGAIQKEIARK 181
Query: 248 A-KGLGMNVIAHDPY-APADKARAVGVELV-SFDQALATADFISLHMPLNPTTSKIFNDE 304
A GLGM ++ +D A A+ +A+G E V S ++ +D +S+ +P T + ++
Sbjct: 182 AVHGLGMKLVYYDVAPADAETEKALGAERVDSLEELARRSDCVSVSVPYMKLTHHLIDEA 241
Query: 305 TFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVT 364
FA MK G RIVN ARG VI ++AL+ AL SG + A LDV EP +L++ ++VT
Sbjct: 242 FFAAMKPGSRIVNTARGPVISQDALIAALKSGKLLSAGLDVHEFEPQV-SKELIEMKHVT 300
Query: 365 VTPHLGASTKEAQEGVAIEIAEAVVGALR-GELSATAINAPMVPS 408
+T H+G E + L G+ T PS
Sbjct: 301 LTTHIGGVAIETFHEFERLTMTNIDRFLLQGKPLLTPAGKVFAPS 345
|
| >3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum} Length = 324 | Back alignment and structure |
|---|
Score = 281 bits (721), Expect = 4e-90
Identities = 76/303 (25%), Positives = 133/303 (43%), Gaps = 3/303 (0%)
Query: 93 ILVSEKLGEAGLAILRSFGNVECLYDLSPEALCEKISQCDALIVRSGTKVTRSVFEAANG 152
+L+++ L L++ + + + Q + + + + + N
Sbjct: 4 VLMAQATKPEQLQQLQTTY-PDWTFKDAAAVTAADYDQIEVMYG-NHPLLKTILARPTN- 60
Query: 153 KLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASI 212
+LK V G+D + L+A G +V N + A +E +A + S+ R A +
Sbjct: 61 QLKFVQVISAGVDYLPLKALQAAGVVVANTSGIHADAISESVLAAMLSVVRGYHAAWLNQ 120
Query: 213 KAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGV 272
+ + +L G+ L + G G++G +A +A LGM+VI + V
Sbjct: 121 RGARQWALPMTTSTLTGQQLLIYGTGQIGQSLAAKASALGMHVIGVNTTGHPADHFHETV 180
Query: 273 ELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRA 332
+ ALATA+FI +PL PTT +F+ E F + K+ ++N+ RG +D AL+ A
Sbjct: 181 AFTATADALATANFIVNALPLTPTTHHLFSTELFQQTKQQPMLINIGRGPAVDTTALMTA 240
Query: 333 LDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKEAQEGVAIEIAEAVVGAL 392
LD ++ AALDV EP D L Q ++V +TPH+ + V A +
Sbjct: 241 LDHHQLSMAALDVTEPEPLPTDHPLWQRDDVLITPHISGQIAHFRATVFPIFAANFAQFV 300
Query: 393 RGE 395
+
Sbjct: 301 KDG 303
|
| >4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti} Length = 340 | Back alignment and structure |
|---|
Score = 260 bits (667), Expect = 7e-82
Identities = 85/316 (26%), Positives = 140/316 (44%), Gaps = 8/316 (2%)
Query: 90 KPTILVSEKLGEAGLAILRSFGNVECLYD-LSPEALCEKISQCDALIVRSGTKVTRSVFE 148
KP +L+ E + + L+ +V LY AL + A+ G ++ E
Sbjct: 30 KPDLLLVEPMMPFVMDELQRNYSVHRLYQAADRPALEAALPSIRAVATGGGAGLSNEWME 89
Query: 149 AANGKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQA 208
L ++ GVG D VDL A V P A+ GIAL+ ++ R V
Sbjct: 90 KLP-SLGIIAINGVGTDKVDLARARRRNIDVTTTPGVLADDVADLGIALMLAVLRRVGDG 148
Query: 209 DASIKAGKWLRSKY--VGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADK 266
D ++ G+W + +G S GK + V+G G++G +A RA+ GM+V + +
Sbjct: 149 DRLVREGRWAAGEQLPLGHSPKGKRIGVLGLGQIGRALASRAEAFGMSVRYWNR---STL 205
Query: 267 ARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDE 326
+ + S +D +++ + + T I + + +VNVARG V+DE
Sbjct: 206 SGVDWIAHQSPVDLARDSDVLAVCVAASAATQNIVDASLLQALGPEGIVVNVARGNVVDE 265
Query: 327 EALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKEAQEGVAIEIAE 386
+AL+ AL SG +A A LDVF EP S+ N + PH G++T E + + +
Sbjct: 266 DALIEALKSGTIAGAGLDVFVNEPAI-RSEFHTTPNTVLMPHQGSATVETRMAMGKLVLA 324
Query: 387 AVVGALRGELSATAIN 402
+ GE + +N
Sbjct: 325 NLAAHFAGEKAPNTVN 340
|
| >3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A* Length = 333 | Back alignment and structure |
|---|
Score = 257 bits (660), Expect = 6e-81
Identities = 75/310 (24%), Positives = 128/310 (41%), Gaps = 8/310 (2%)
Query: 89 PKPTILVSEKLGEAGLAILRSFGNVECLYD--LSPEALCEKISQCDALIVRSGTKVTRSV 146
+L+ + L + + + L + A++ S +
Sbjct: 22 EAIGVLMMCPMSTYLEQELDKRFKLFRYWTQPAQRDFLALQAESIRAVVGNSNAGADAEL 81
Query: 147 FEAANGKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVS 206
+A KL++V VG+D VDL E G V N P T A+ I L+ ++ R +
Sbjct: 82 IDALP-KLEIVSSFSVGLDKVDLIKCEEKGVRVTNTPDVLTDDVADLAIGLILAVLRRIC 140
Query: 207 QADASIKAGKWLRSKY-VGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPAD 265
+ D ++ G W + + GK + ++G G++G VA RA+ + +
Sbjct: 141 ECDKYVRRGAWKFGDFKLTTKFSGKRVGIIGLGRIGLAVAERAEAFDCPISYFSRSKKPN 200
Query: 266 KARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVID 325
S + + +D + + PL P T+ I N E + ++N+ RG +D
Sbjct: 201 TNYT---YYGSVVELASNSDILVVACPLTPETTHIINREVIDALGPKGVLINIGRGPHVD 257
Query: 326 EEALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKEAQEGVAIEIA 385
E LV AL G + A LDVF EP KL ENV + PH+G+ T E ++ +A +
Sbjct: 258 EPELVSALVEGRLGGAGLDVFEREPEV-PEKLFGLENVVLLPHVGSGTVETRKVMADLVV 316
Query: 386 EAVVGALRGE 395
+ G+
Sbjct: 317 GNLEAHFSGK 326
|
| >3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp} Length = 324 | Back alignment and structure |
|---|
Score = 199 bits (507), Expect = 1e-58
Identities = 71/288 (24%), Positives = 115/288 (39%), Gaps = 12/288 (4%)
Query: 90 KPTILVSEKLGEAGLAILRS--FGNVECLYDLSPEALCEKISQCDALIVRSGTKVTRSVF 147
+ T+L+ + +L++ ++ L + + I + L+ + +
Sbjct: 5 QRTLLLLSQDNAHYERLLKAAHLPHLRILRADNQSDAEKLIGEAHILMAE--PARAKPLL 62
Query: 148 EAANGKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQ 207
AN KL G+D + L A + N +E+ L S+ R +
Sbjct: 63 AKAN-KLSWFQSTYAGVDVL-LDARCRRDYQLTNVRGIFGPLMSEYVFGHLLSLMRQLPL 120
Query: 208 ADASIKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIA--HDPYAPAD 265
K W Y L G+TL ++G G +G +A K GM V+ A
Sbjct: 121 YREQQKQRLWQSHPYQ--GLKGRTLLILGTGSIGQHIAHTGKHFGMKVLGVSRSGRERAG 178
Query: 266 KARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVID 325
+ + + ++ LA AD I +P T +F F K G + NV RG I+
Sbjct: 179 FDQVYQLP--ALNKMLAQADVIVSVLPATRETHHLFTASRFEHCKPGAILFNVGRGNAIN 236
Query: 326 EEALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGAST 373
E L+ AL +G + A LDVF +EP DS L N+ +TPH A +
Sbjct: 237 EGDLLTALRTGKLGMAVLDVFEQEPLPADSPLWGQPNLIITPHNSAYS 284
|
| >3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A Length = 315 | Back alignment and structure |
|---|
Score = 185 bits (471), Expect = 1e-53
Identities = 60/255 (23%), Positives = 102/255 (40%), Gaps = 14/255 (5%)
Query: 149 AANGKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAA------AEHGIALLASMA 202
A +LK V G G+D + + L + P+ E+ ++ +
Sbjct: 55 LAGRRLKAVFVLGAGVDAILSKLNAHPEMLDASIPLFRLEDTGMGLQMQEYAVSQVLHWF 114
Query: 203 RNVSQADASIKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVI--AHDP 260
R A W + ++ +MG G +G++VA + G + +
Sbjct: 115 RRFDDYQALKNQALWKPLPEY--TREEFSVGIMGAGVLGAKVAESLQAWGFPLRCWSRSR 172
Query: 261 YAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVAR 320
+ VG E L + +P T I N E ++ G ++N+AR
Sbjct: 173 KSWPGVESYVGRE--ELRAFLNQTRVLINLLPNTAQTVGIINSELLDQLPDGAYVLNLAR 230
Query: 321 GGVIDEEALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKEAQEGV 380
G + E L+ ALDSG + A LDVF++EP ++S L +H V +TPH+ A T+
Sbjct: 231 GVHVQEADLLAALDSGKLKGAMLDVFSQEPLPQESPLWRHPRVAMTPHIAAVTRP--AEA 288
Query: 381 AIEIAEAVVGALRGE 395
I+ + +GE
Sbjct: 289 IDYISRTITQLEKGE 303
|
| >3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans} Length = 293 | Back alignment and structure |
|---|
Score = 81.9 bits (202), Expect = 3e-17
Identities = 40/264 (15%), Positives = 81/264 (30%), Gaps = 28/264 (10%)
Query: 95 VSEKLGEAGLAILRSFGNVECLYDLSPEALC----EKISQCDALIVRSGTKVTRSVFEAA 150
+ KL A + G + + DA+++
Sbjct: 20 IIRKLSTFD-AKISLVGFDQLDDGFIGVTKMRIDEVDWNTVDAILLPI-------SGTNE 71
Query: 151 NGKLKVVGRAGVGIDNVDLQAATEFGCLVV--NAPIANTVAAAEHGIALLASMARNVSQA 208
GK+ + + ++ T C+V + + L+ M R+
Sbjct: 72 AGKVDTIFSNESIVLTEEMIEKTPNHCVVYSGISNTYLNQCMKKTNRTLVKLMERDDIAI 131
Query: 209 DASIKAGKW---LRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHD-PYAPA 264
SI + + ++ ++ G +AV+G G+VG VAR+ LG V
Sbjct: 132 YNSIPTAEGTIMMAIQHTDFTIHGANVAVLGLGRVGMSVARKFAALGAKVKVGARESDLL 191
Query: 265 DKARAVGVELVSFD---QALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARG 321
+ +G+E Q L D +P + + A+M ++++A
Sbjct: 192 ARIAEMGMEPFHISKAAQELRDVDVCINTIP-----ALVVTANVLAEMPSHTFVIDLASK 246
Query: 322 GVIDEEALVRALDSGVVAQAALDV 345
+ G+ A +
Sbjct: 247 PGGTDFRYAEKR--GIKALLVPGL 268
|
| >2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis} Length = 300 | Back alignment and structure |
|---|
Score = 54.0 bits (130), Expect = 5e-08
Identities = 41/229 (17%), Positives = 76/229 (33%), Gaps = 27/229 (11%)
Query: 126 EKISQCDALIVRSGTKVTRSVFEAANGKLKVVGRAGVGIDNVDLQAATEFGCLVV--NAP 183
Q D++I+ G + V + D T C++ +
Sbjct: 56 IPFQQIDSIILPV-------SATTGEGVVSTVFSNEEVVLKQDHLDRTPAHCVIFSGISN 108
Query: 184 IANTVAAAEHGIALLASMAR-NVSQADASIKAGKWLRS--KYVGVSLVGKTLAVMGFGKV 240
AA+ L+ R +++ ++ + ++ ++ G +AV+G G+
Sbjct: 109 AYLENIAAQAKRKLVKLFERDDIAIYNSIPTVEGTIMLAIQHTDYTIHGSQVAVLGLGRT 168
Query: 241 GSEVARRAKGLGMNV--IAHDPY--APADKARAVGVELVSFDQALATADFISLHMPLNPT 296
G +AR LG NV A A + V + + D +N
Sbjct: 169 GMTIARTFAALGANVKVGARSSAHLARITEMGLVPFHTDELKEHVKDIDIC-----INTI 223
Query: 297 TSKIFNDETFAKMKKGVRIVNVA--RGGVIDEEALVRALDSGVVAQAAL 343
S I N + M I+++A GG + A + G+ A A
Sbjct: 224 PSMILNQTVLSSMTPKTLILDLASRPGGTDFKYAEKQ----GIKALLAP 268
|
| >3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A* Length = 436 | Back alignment and structure |
|---|
Score = 47.6 bits (114), Expect = 8e-06
Identities = 27/99 (27%), Positives = 43/99 (43%), Gaps = 13/99 (13%)
Query: 225 VSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAH--DPYAPADKARAVGVELVSFDQALA 282
V + GKT V G+G VG A +G G V+ DP A +A G +++ + +
Sbjct: 207 VMIAGKTACVCGYGDVGKGCAAALRGFGARVVVTEVDPIN-ALQAAMEGYQVLLVEDVVE 265
Query: 283 TAD-FISLHMPLNPTT--SKIFNDETFAKMKKGVRIVNV 318
A F++ TT I E F +M+ + N+
Sbjct: 266 EAHIFVT-------TTGNDDIITSEHFPRMRDDAIVCNI 297
|
| >3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A* Length = 435 | Back alignment and structure |
|---|
Score = 47.6 bits (114), Expect = 8e-06
Identities = 24/99 (24%), Positives = 38/99 (38%), Gaps = 13/99 (13%)
Query: 225 VSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAH--DPYAPADKARAVGVELVSFDQALA 282
+ GK + V G+G+VG K +G V DP A +A G LV ++ +
Sbjct: 216 MMFGGKQVVVCGYGEVGKGCCAALKAMGSIVYVTEIDPIC-ALQACMDGFRLVKLNEVIR 274
Query: 283 TAD-FISLHMPLNPTT--SKIFNDETFAKMKKGVRIVNV 318
D I+ T + E +MK + N+
Sbjct: 275 QVDIVIT-------CTGNKNVVTREHLDRMKNSCIVCNM 306
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 46.8 bits (110), Expect = 2e-05
Identities = 39/227 (17%), Positives = 66/227 (29%), Gaps = 52/227 (22%)
Query: 326 EEALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKEAQEGVAIEIA 385
E+A V D V + ++E D ++ + V+ T L + QE + +
Sbjct: 26 EDAFVDNFDCKDVQDMPKSILSKE--EIDHIIMSKDAVSGTLRLFWTLLSKQEEM---VQ 80
Query: 386 EAVVGALRGELS--ATAI----NAPMVPSEVLSE-----------LAPYVV--------L 420
+ V LR + I P + + + E A Y V L
Sbjct: 81 KFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKL 140
Query: 421 AKKLGRLAVQ---LVSG--GSGIKSVKLIYRSARDPDDLDTRILRAM------ITKGIIE 469
+ L L L+ G GSG K+ + ++ M +
Sbjct: 141 RQALLELRPAKNVLIDGVLGSG-KTW-VALDVCL-----SYKVQCKMDFKIFWLNLKNCN 193
Query: 470 PISASFINLVNADFTAKQKGLRISEERVVADSSPEFPIDSIQVQLSN 516
L + R S+ + I SIQ +L
Sbjct: 194 SPETVLEMLQKLLYQIDPNW----TSRSDHSSNIKLRIHSIQAELRR 236
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 46.8 bits (110), Expect = 2e-05
Identities = 60/418 (14%), Positives = 110/418 (26%), Gaps = 138/418 (33%)
Query: 12 KPIFTTRSKSSNSSKSSLLSFLHNTKPKPISLKFSSHNSNYTTPPSFTISNSLQTALETS 71
K + TTR K + FL ISL S + T L
Sbjct: 267 KILLTTRFK-------QVTDFLSAATTTHISLDHHS--------MTLTPDEVKS--LLLK 309
Query: 72 ELHVSKFQDDLNVQAVTPKPTI--LVSEKLGEAGLAILRSFGNVECLYDLSPEALCEKIS 129
L DL + +T P +++E + + GLA ++ +V C + L I
Sbjct: 310 YLDCRP--QDLPREVLTTNPRRLSIIAESIRD-GLATWDNWKHVNC------DKLTTIIE 360
Query: 130 QC-DALIVRSGTKVTRSVFEAANGKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTV 188
+ L R +F+ +A I +
Sbjct: 361 SSLNVL----EPAEYRKMFD-------------------------RLSVFPPSAHIPTIL 391
Query: 189 AAAEHGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRA 248
++L+ W V +V L S V ++
Sbjct: 392 ------LSLI------------------WFDVIKSDVMVVVNKLHKY------SLVEKQP 421
Query: 249 KGLGMNVIAHDPY----APADKARAVGVELVSFDQALATAD---------------FISL 289
K +++ Y + A+ +V T D I
Sbjct: 422 KESTISI--PSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGH 479
Query: 290 HM-PLNPTT-----SKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAAL 343
H+ + +F D F + K +R + A ++ L
Sbjct: 480 HLKNIEHPERMTLFRMVFLDFRFLEQK--IRHDSTAWNASGSILNTLQQLKF------YK 531
Query: 344 DVFTEEPPAKDSK-------LVQHE-NVTVTPH-----LGASTKEAQEGVAIEIAEAV 388
+ P + L + E N+ + + + ++ E + E + V
Sbjct: 532 PYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAED--EAIFEEAHKQV 587
|
| >3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP} Length = 286 | Back alignment and structure |
|---|
Score = 45.1 bits (106), Expect = 3e-05
Identities = 26/186 (13%), Positives = 59/186 (31%), Gaps = 14/186 (7%)
Query: 229 GKTLAVMG-FGKVGSEVARRAKGLGMNVIAHDPY-APADKARAVGVELVSFDQALATADF 286
KT+A++G GK+G+ + R+ ++ A + D+ + +G+ L D + AD
Sbjct: 11 PKTVAILGAGGKMGARITRKIHDSAHHLAAIEIAPEGRDRLQGMGIPLTDGDGWIDEADV 70
Query: 287 ISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAA---- 342
+ L +P + ++ +++ G ++ + ++
Sbjct: 71 VVLALP--DNIIEKVAEDIVPRVRPGTIVLIL--DAAAPYAGVMPERADITYFIGHPCHP 126
Query: 343 ---LDVFTEEPPAKDSKLVQHENVTVTPHLGASTKEAQ-EGVAIEIAEAVVGALRGELSA 398
D + + + G A + + V R
Sbjct: 127 PLFNDETDPAARTDYHGGIAKQAIVCALMQGPEEHYAIGADICETMWSPVTRTHRVTTEQ 186
Query: 399 TAINAP 404
AI P
Sbjct: 187 LAILEP 192
|
| >3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus} Length = 464 | Back alignment and structure |
|---|
Score = 45.4 bits (108), Expect = 4e-05
Identities = 30/99 (30%), Positives = 43/99 (43%), Gaps = 13/99 (13%)
Query: 225 VSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAH--DPYAPADKARAVGVELVSFDQALA 282
V + GK V G+G VG A+ G G V DP A +A G E+V+ D A +
Sbjct: 243 VMMAGKVAVVCGYGDVGKGSAQSLAGAGARVKVTEVDPIC-ALQAAMDGFEVVTLDDAAS 301
Query: 283 TAD-FISLHMPLNPTT--SKIFNDETFAKMKKGVRIVNV 318
TAD ++ TT + + KMK + N+
Sbjct: 302 TADIVVT-------TTGNKDVITIDHMRKMKDMCIVGNI 333
|
| >1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1 Length = 364 | Back alignment and structure |
|---|
Score = 44.8 bits (107), Expect = 5e-05
Identities = 14/75 (18%), Positives = 27/75 (36%), Gaps = 4/75 (5%)
Query: 211 SIKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADK--AR 268
+KA + + SL G ++V G G V + ++ G ++ D A
Sbjct: 157 GMKA--AAKEAFGSDSLEGLAVSVQGLGNVAKALCKKLNTEGAKLVVTDVNKAAVSAAVA 214
Query: 269 AVGVELVSFDQALAT 283
G + V+ +
Sbjct: 215 EEGADAVAPNAIYGV 229
|
| >1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB: 1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A* Length = 355 | Back alignment and structure |
|---|
Score = 44.5 bits (106), Expect = 6e-05
Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Query: 226 SLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPA-DKARAVGVELVSFDQALAT 283
SL G T+ V G G VG +A A G ++ D A A+G V+ + L+T
Sbjct: 172 SLDGLTVLVQGLGAVGGSLASLAAEAGAQLLVADTDTERVAHAVALGHTAVALEDVLST 230
|
| >3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydro NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei} PDB: 3glq_A* Length = 494 | Back alignment and structure |
|---|
Score = 43.2 bits (102), Expect = 2e-04
Identities = 27/99 (27%), Positives = 42/99 (42%), Gaps = 13/99 (13%)
Query: 225 VSLVGKTLAVMGFGKVGSEVARRAKGLGMNVI--AHDPYAPADKARAVGVELVSFDQALA 282
V + GK V G+G VG A+ +GLG V DP A +A G +V+ + A
Sbjct: 273 VMIAGKIAVVAGYGDVGKGCAQSLRGLGATVWVTEIDPIC-ALQAAMEGYRVVTMEYAAD 331
Query: 283 TAD-FISLHMPLNPTT--SKIFNDETFAKMKKGVRIVNV 318
AD F++ T + N + M+ + N+
Sbjct: 332 KADIFVT-------ATGNYHVINHDHMKAMRHNAIVCNI 363
|
| >3aoe_E Glutamate dehydrogenase; rossmann fold, NADH, oxidoreductase; 2.60A {Thermus thermophilus} Length = 419 | Back alignment and structure |
|---|
Score = 43.3 bits (103), Expect = 2e-04
Identities = 17/37 (45%), Positives = 23/37 (62%)
Query: 221 KYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIA 257
K G+ L G + V G G+VG+ VA A+ LGM V+A
Sbjct: 210 KRRGLDLRGARVVVQGLGQVGAAVALHAERLGMRVVA 246
|
| >3aog_A Glutamate dehydrogenase; NAD(H), oxidoreducta; HET: GLU; 2.10A {Thermus thermophilus HB27} PDB: 3aoe_A Length = 440 | Back alignment and structure |
|---|
Score = 42.9 bits (102), Expect = 2e-04
Identities = 13/37 (35%), Positives = 21/37 (56%)
Query: 221 KYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIA 257
+ +G+ + G +A+ GFG VG+ AR G V+A
Sbjct: 227 EKIGLQVEGARVAIQGFGNVGNAAARAFHDHGARVVA 263
|
| >1v9l_A Glutamate dehydrogenase; protein-NAD complex, oxidoreductase; HET: NAD; 2.80A {Pyrobaculum islandicum} SCOP: c.2.1.7 c.58.1.1 Length = 421 | Back alignment and structure |
|---|
Score = 42.9 bits (102), Expect = 2e-04
Identities = 14/37 (37%), Positives = 20/37 (54%)
Query: 221 KYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIA 257
K + + GKT+A+ G G VG A + +G VIA
Sbjct: 202 KKLWGGIEGKTVAIQGMGNVGRWTAYWLEKMGAKVIA 238
|
| >3k92_A NAD-GDH, NAD-specific glutamate dehydrogenase; ROCG, oxidoreductase; 2.30A {Bacillus subtilis} PDB: 3k8z_A Length = 424 | Back alignment and structure |
|---|
Score = 42.9 bits (102), Expect = 2e-04
Identities = 12/37 (32%), Positives = 17/37 (45%)
Query: 221 KYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIA 257
K G+ L + + GFG GS +A+ G VI
Sbjct: 213 KKKGIKLQNARIIIQGFGNAGSFLAKFMHDAGAKVIG 249
|
| >2yfq_A Padgh, NAD-GDH, NAD-specific glutamate dehydrogenase; oxidoreductase; 2.94A {Peptoniphilus asaccharolyticus} Length = 421 | Back alignment and structure |
|---|
Score = 42.9 bits (102), Expect = 2e-04
Identities = 12/37 (32%), Positives = 18/37 (48%)
Query: 221 KYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIA 257
K G+ + +AV GFG VG+ + + G V A
Sbjct: 204 KRFGIKMEDAKIAVQGFGNVGTFTVKNIERQGGKVCA 240
|
| >3mw9_A GDH 1, glutamate dehydrogenase 1; allostery, inhibition, oxidoreducta; HET: GLU GTP NAD; 2.40A {Bos taurus} PDB: 3mvo_A* 3mvq_A* 3qmu_A* 3etd_A* 3ete_A* 3etg_A* 1l1f_A 1nr1_A 1nr7_A 1nqt_A 1hwx_A* 1hwy_A* 1hwz_A* Length = 501 | Back alignment and structure |
|---|
Score = 41.6 bits (98), Expect = 6e-04
Identities = 12/46 (26%), Positives = 15/46 (32%)
Query: 212 IKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIA 257
I ++ + KT V GFG VG R G I
Sbjct: 227 INEASYMSILGMTPGFGDKTFVVQGFGNVGLHSMRYLHRFGAKCIT 272
|
| >1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum} SCOP: c.2.1.4 c.23.12.3 Length = 479 | Back alignment and structure |
|---|
Score = 41.3 bits (97), Expect = 9e-04
Identities = 28/99 (28%), Positives = 41/99 (41%), Gaps = 13/99 (13%)
Query: 225 VSLVGKTLAVMGFGKVGSEVARRAKGLGMNVI--AHDPYAPADKARAVGVELVSFDQALA 282
+ GK + + G+G VG A KGLG V DP A +A G +V+ D+ +
Sbjct: 253 FLISGKIVVICGYGDVGKGCASSMKGLGARVYITEIDPI-CAIQAVMEGFNVVTLDEIVD 311
Query: 283 TAD-FISLHMPLNPTT--SKIFNDETFAKMKKGVRIVNV 318
D FI+ T + E KMK + N+
Sbjct: 312 KGDFFIT-------CTGNVDVIKLEHLLKMKNNAVVGNI 343
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 628 | |||
| 1ygy_A | 529 | PGDH, D-3-phosphoglycerate dehydrogenase; oxidored | 100.0 | |
| 1sc6_A | 404 | PGDH, D-3-phosphoglycerate dehydrogenase; alloster | 100.0 | |
| 3k5p_A | 416 | D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, | 100.0 | |
| 4g2n_A | 345 | D-isomer specific 2-hydroxyacid dehydrogenase, Na; | 100.0 | |
| 4e5n_A | 330 | Thermostable phosphite dehydrogenase; D-2-hydroxya | 100.0 | |
| 4dgs_A | 340 | Dehydrogenase; structural genomics, PSI-biology, N | 100.0 | |
| 3kb6_A | 334 | D-lactate dehydrogenase; oxidoreductase, D-LDH, NA | 100.0 | |
| 2pi1_A | 334 | D-lactate dehydrogenase; oxidoreductase, D-LDH, NA | 100.0 | |
| 3gg9_A | 352 | D-3-phosphoglycerate dehydrogenase oxidoreductase; | 100.0 | |
| 2g76_A | 335 | 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor | 100.0 | |
| 4hy3_A | 365 | Phosphoglycerate oxidoreductase; PSI-biology, stru | 100.0 | |
| 3hg7_A | 324 | D-isomer specific 2-hydroxyacid dehydrogenase FAM | 100.0 | |
| 2yq5_A | 343 | D-isomer specific 2-hydroxyacid dehydrogenase; oxi | 100.0 | |
| 3jtm_A | 351 | Formate dehydrogenase, mitochondrial; mitochondrio | 100.0 | |
| 3evt_A | 324 | Phosphoglycerate dehydrogenase; structural genomic | 100.0 | |
| 1wwk_A | 307 | Phosphoglycerate dehydrogenase; riken structural g | 100.0 | |
| 1j4a_A | 333 | D-LDH, D-lactate dehydrogenase; NAD-dependent dehy | 100.0 | |
| 1dxy_A | 333 | D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxyc | 100.0 | |
| 2ekl_A | 313 | D-3-phosphoglycerate dehydrogenase; structural gen | 100.0 | |
| 1gdh_A | 320 | D-glycerate dehydrogenase; oxidoreductase(CHOH (D) | 100.0 | |
| 1xdw_A | 331 | NAD+-dependent (R)-2-hydroxyglutarate dehydrogenas | 100.0 | |
| 2cuk_A | 311 | Glycerate dehydrogenase/glyoxylate reductase; stru | 100.0 | |
| 2j6i_A | 364 | Formate dehydrogenase; oxidoreductase, D-specific- | 100.0 | |
| 2w2k_A | 348 | D-mandelate dehydrogenase; 2-hydroxyacid dehydroge | 100.0 | |
| 3ba1_A | 333 | HPPR, hydroxyphenylpyruvate reductase; two domain | 100.0 | |
| 2nac_A | 393 | NAD-dependent formate dehydrogenase; oxidoreductas | 100.0 | |
| 1mx3_A | 347 | CTBP1, C-terminal binding protein 1; nuclear prote | 100.0 | |
| 2d0i_A | 333 | Dehydrogenase; structural genomics, NPPSFA, nation | 100.0 | |
| 2dbq_A | 334 | Glyoxylate reductase; D-3-phosphoglycerate dehydro | 100.0 | |
| 2gcg_A | 330 | Glyoxylate reductase/hydroxypyruvate reductase; NA | 100.0 | |
| 3pp8_A | 315 | Glyoxylate/hydroxypyruvate reductase A; structural | 100.0 | |
| 1qp8_A | 303 | Formate dehydrogenase; oxidoreductase; HET: NDP; 2 | 100.0 | |
| 3oet_A | 381 | Erythronate-4-phosphate dehydrogenase; structural | 100.0 | |
| 3gvx_A | 290 | Glycerate dehydrogenase related protein; NYSGXRC, | 100.0 | |
| 2o4c_A | 380 | Erythronate-4-phosphate dehydrogenase; erythronate | 100.0 | |
| 1v8b_A | 479 | Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2 | 100.0 | |
| 3d64_A | 494 | Adenosylhomocysteinase; structural genomics, ssgci | 100.0 | |
| 3d4o_A | 293 | Dipicolinate synthase subunit A; NP_243269.1, stru | 99.95 | |
| 3ce6_A | 494 | Adenosylhomocysteinase; protein-substrate complex, | 99.94 | |
| 2rir_A | 300 | Dipicolinate synthase, A chain; structural genomic | 99.93 | |
| 2vhw_A | 377 | Alanine dehydrogenase; NAD, secreted, oxidoreducta | 99.91 | |
| 2eez_A | 369 | Alanine dehydrogenase; TTHA0216, structural genomi | 99.81 | |
| 1gtm_A | 419 | Glutamate dehydrogenase; oxidoreductase, NAD, NADP | 99.8 | |
| 1x13_A | 401 | NAD(P) transhydrogenase subunit alpha; NAD(H)-bind | 99.79 | |
| 1l7d_A | 384 | Nicotinamide nucleotide transhydrogenase, subunit | 99.75 | |
| 3h9u_A | 436 | Adenosylhomocysteinase; NAD CO-factor complex, str | 99.72 | |
| 3n58_A | 464 | Adenosylhomocysteinase; ssgcid, hydrolase, structu | 99.68 | |
| 1gpj_A | 404 | Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro | 99.65 | |
| 3gvp_A | 435 | Adenosylhomocysteinase 3; protein CO-factor comple | 99.6 | |
| 3ggo_A | 314 | Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b | 99.51 | |
| 3ktd_A | 341 | Prephenate dehydrogenase; structural genomics, joi | 99.44 | |
| 2g5c_A | 281 | Prephenate dehydrogenase; TYRA, oxidoreductase; HE | 99.3 | |
| 1c1d_A | 355 | L-phenylalanine dehydrogenase; amino acid dehydrog | 99.24 | |
| 3p2y_A | 381 | Alanine dehydrogenase/pyridine nucleotide transhy; | 99.24 | |
| 4dll_A | 320 | 2-hydroxy-3-oxopropionate reductase; structural ge | 99.22 | |
| 3l6d_A | 306 | Putative oxidoreductase; structural genomics, prot | 99.2 | |
| 4dio_A | 405 | NAD(P) transhydrogenase subunit alpha PART 1; stru | 99.19 | |
| 3obb_A | 300 | Probable 3-hydroxyisobutyrate dehydrogenase; struc | 99.18 | |
| 3doj_A | 310 | AT3G25530, dehydrogenase-like protein; gamma-hydro | 99.17 | |
| 2d5c_A | 263 | AROE, shikimate 5-dehydrogenase; substrate, dimer, | 99.16 | |
| 4ezb_A | 317 | Uncharacterized conserved protein; structural geno | 99.16 | |
| 3qsg_A | 312 | NAD-binding phosphogluconate dehydrogenase-like P; | 99.15 | |
| 4gbj_A | 297 | 6-phosphogluconate dehydrogenase NAD-binding; stru | 99.15 | |
| 3qha_A | 296 | Putative oxidoreductase; seattle structural genomi | 99.14 | |
| 4e21_A | 358 | 6-phosphogluconate dehydrogenase (decarboxylating; | 99.12 | |
| 3b1f_A | 290 | Putative prephenate dehydrogenase; enzyme, 4-hydro | 99.12 | |
| 3pef_A | 287 | 6-phosphogluconate dehydrogenase, NAD-binding; gam | 99.11 | |
| 1np3_A | 338 | Ketol-acid reductoisomerase; A DEEP figure-OF-eigh | 99.1 | |
| 3ond_A | 488 | Adenosylhomocysteinase; plant protein, enzyme-subs | 99.09 | |
| 2h78_A | 302 | Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601 | 99.08 | |
| 3pdu_A | 287 | 3-hydroxyisobutyrate dehydrogenase family protein; | 99.08 | |
| 2pv7_A | 298 | T-protein [includes: chorismate mutase (EC 5.4.99 | 99.07 | |
| 3g0o_A | 303 | 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine | 99.07 | |
| 4e12_A | 283 | Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1 | 99.05 | |
| 2iaf_A | 151 | Hypothetical protein SDHL; MCSG, PSI2, MAD, struct | 99.04 | |
| 2hk9_A | 275 | Shikimate dehydrogenase; shikimate pathway, drug d | 99.02 | |
| 2f1k_A | 279 | Prephenate dehydrogenase; tyrosine synthesis, X-RA | 98.97 | |
| 1vpd_A | 299 | Tartronate semialdehyde reductase; structural geno | 98.9 | |
| 4gwg_A | 484 | 6-phosphogluconate dehydrogenase, decarboxylating; | 98.89 | |
| 2yjz_A | 201 | Metalloreductase steap4; oxidoreductase, metabolic | 98.36 | |
| 3dtt_A | 245 | NADP oxidoreductase; structural genomics, joint ce | 98.85 | |
| 3fr7_A | 525 | Putative ketol-acid reductoisomerase (OS05G057370 | 98.85 | |
| 3cky_A | 301 | 2-hydroxymethyl glutarate dehydrogenase; rossmann | 98.85 | |
| 1yb4_A | 295 | Tartronic semialdehyde reductase; structural genom | 98.84 | |
| 2gf2_A | 296 | Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct | 98.84 | |
| 2cvz_A | 289 | Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; | 98.84 | |
| 2zyd_A | 480 | 6-phosphogluconate dehydrogenase, decarboxylating; | 98.82 | |
| 2uyy_A | 316 | N-PAC protein; long-chain dehydrogenase, cytokine; | 98.8 | |
| 1i36_A | 264 | Conserved hypothetical protein MTH1747; NADP bindi | 98.77 | |
| 2p4q_A | 497 | 6-phosphogluconate dehydrogenase, decarboxylating; | 98.76 | |
| 1zej_A | 293 | HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural | 98.75 | |
| 1leh_A | 364 | Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi | 98.74 | |
| 1pjc_A | 361 | Protein (L-alanine dehydrogenase); oxidoreductase, | 98.71 | |
| 3k6j_A | 460 | Protein F01G10.3, confirmed by transcript evidenc; | 98.71 | |
| 2iz1_A | 474 | 6-phosphogluconate dehydrogenase, decarboxylating; | 98.7 | |
| 2dpo_A | 319 | L-gulonate 3-dehydrogenase; structural genomics, N | 98.7 | |
| 2pgd_A | 482 | 6-phosphogluconate dehydrogenase; oxidoreductase ( | 98.69 | |
| 2q3e_A | 467 | UDP-glucose 6-dehydrogenase; hexamer, structural g | 98.65 | |
| 2vns_A | 215 | Metalloreductase steap3; metal-binding, transmembr | 98.65 | |
| 1pgj_A | 478 | 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o | 98.63 | |
| 2raf_A | 209 | Putative dinucleotide-binding oxidoreductase; NP_7 | 98.59 | |
| 3d1l_A | 266 | Putative NADP oxidoreductase BF3122; structural ge | 98.58 | |
| 3c24_A | 286 | Putative oxidoreductase; YP_511008.1, structural g | 98.56 | |
| 3gt0_A | 247 | Pyrroline-5-carboxylate reductase; structural geno | 98.56 | |
| 3oj0_A | 144 | Glutr, glutamyl-tRNA reductase; structural genomic | 98.55 | |
| 3pid_A | 432 | UDP-glucose 6-dehydrogenase; rossmann fold, oxidor | 98.5 | |
| 1f0y_A | 302 | HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive | 98.49 | |
| 2ahr_A | 259 | Putative pyrroline carboxylate reductase; pyrrolin | 98.42 | |
| 2izz_A | 322 | Pyrroline-5-carboxylate reductase 1; amino-acid bi | 98.42 | |
| 3tri_A | 280 | Pyrroline-5-carboxylate reductase; amino acid bios | 98.4 | |
| 1mv8_A | 436 | GMD, GDP-mannose 6-dehydrogenase; rossman fold, do | 98.39 | |
| 1yqg_A | 263 | Pyrroline-5-carboxylate reductase; structural geno | 98.34 | |
| 3mog_A | 483 | Probable 3-hydroxybutyryl-COA dehydrogenase; struc | 98.32 | |
| 2i99_A | 312 | MU-crystallin homolog; thyroid hormine binding pro | 98.31 | |
| 3dfu_A | 232 | Uncharacterized protein from 6-phosphogluconate de | 98.29 | |
| 3p2o_A | 285 | Bifunctional protein fold; structural genomics, ce | 98.29 | |
| 4a7p_A | 446 | UDP-glucose dehydrogenase; oxidoreductase, carbohy | 98.25 | |
| 2rcy_A | 262 | Pyrroline carboxylate reductase; malaria, structur | 98.23 | |
| 1zcj_A | 463 | Peroxisomal bifunctional enzyme; peroxisomal multi | 98.23 | |
| 3gg2_A | 450 | Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd | 98.22 | |
| 1jay_A | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma | 98.2 | |
| 1bg6_A | 359 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L | 98.19 | |
| 2ew2_A | 316 | 2-dehydropantoate 2-reductase, putative; alpha-str | 98.13 | |
| 4huj_A | 220 | Uncharacterized protein; PSI-biology, nysgrc, stru | 98.11 | |
| 1dlj_A | 402 | UDP-glucose dehydrogenase; rossmann fold, ternary | 98.09 | |
| 2o3j_A | 481 | UDP-glucose 6-dehydrogenase; structural genomics, | 98.09 | |
| 1txg_A | 335 | Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid | 98.06 | |
| 2y0c_A | 478 | BCEC, UDP-glucose dehydrogenase; oxidoreductase, c | 98.03 | |
| 3k96_A | 356 | Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA | 98.02 | |
| 1y7p_A | 223 | Hypothetical protein AF1403; structural genomics, | 98.02 | |
| 1wdk_A | 715 | Fatty oxidation complex alpha subunit; alpha2BETA2 | 98.0 | |
| 1b0a_A | 288 | Protein (fold bifunctional protein); folate, dehyd | 98.0 | |
| 3ojo_A | 431 | CAP5O; rossmann fold, complex with cofactor NAD an | 97.99 | |
| 1x0v_A | 354 | GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase | 97.99 | |
| 4a26_A | 300 | Putative C-1-tetrahydrofolate synthase, cytoplasm; | 97.99 | |
| 4a5o_A | 286 | Bifunctional protein fold; oxidoreductase, hydrola | 97.98 | |
| 3ulk_A | 491 | Ketol-acid reductoisomerase; branched-chain amino | 97.98 | |
| 3g79_A | 478 | NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; | 97.98 | |
| 3l07_A | 285 | Bifunctional protein fold; structural genomics, ID | 97.97 | |
| 1evy_A | 366 | Glycerol-3-phosphate dehydrogenase; rossmann fold, | 97.96 | |
| 2dc1_A | 236 | L-aspartate dehydrogenase; NAD, oxidoreductase; HE | 97.96 | |
| 2c2x_A | 281 | Methylenetetrahydrofolate dehydrogenase- methenylt | 97.95 | |
| 3ngx_A | 276 | Bifunctional protein fold; methylenetetrahydrofola | 97.95 | |
| 2wtb_A | 725 | MFP2, fatty acid multifunctional protein (ATMFP2); | 97.93 | |
| 1a4i_A | 301 | Methylenetetrahydrofolate dehydrogenase / methenyl | 97.93 | |
| 3phh_A | 269 | Shikimate dehydrogenase; shikimate pathway, helico | 97.93 | |
| 1edz_A | 320 | 5,10-methylenetetrahydrofolate dehydrogenase; nucl | 97.92 | |
| 1ks9_A | 291 | KPA reductase;, 2-dehydropantoate 2-reductase; PAN | 97.91 | |
| 2qyt_A | 317 | 2-dehydropantoate 2-reductase; APC81190, porphyrom | 97.9 | |
| 1y81_A | 138 | Conserved hypothetical protein; hyperthermophIle, | 97.89 | |
| 1z82_A | 335 | Glycerol-3-phosphate dehydrogenase; TM0378, struct | 97.89 | |
| 3don_A | 277 | Shikimate dehydrogenase; alpha-beta structure, ros | 97.88 | |
| 1yj8_A | 375 | Glycerol-3-phosphate dehydrogenase; SGPP, structur | 97.87 | |
| 2egg_A | 297 | AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff | 97.87 | |
| 3c85_A | 183 | Putative glutathione-regulated potassium-efflux S | 97.86 | |
| 3ghy_A | 335 | Ketopantoate reductase protein; oxidoreductase, NA | 97.83 | |
| 3hdj_A | 313 | Probable ornithine cyclodeaminase; APC62486, borde | 97.81 | |
| 3u62_A | 253 | Shikimate dehydrogenase; shikimate pathway, oxidor | 97.76 | |
| 3i83_A | 320 | 2-dehydropantoate 2-reductase; structural genomics | 97.75 | |
| 2g1u_A | 155 | Hypothetical protein TM1088A; structural genomics, | 97.75 | |
| 2duw_A | 145 | Putative COA-binding protein; ligand binding prote | 97.73 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 97.64 | |
| 2i76_A | 276 | Hypothetical protein; NADP, dehydrogenase, TM1727, | 97.64 | |
| 3hn2_A | 312 | 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str | 97.63 | |
| 2ko1_A | 88 | CTR148A, GTP pyrophosphokinase; homodimer, alpha+b | 97.61 | |
| 1lss_A | 140 | TRK system potassium uptake protein TRKA homolog; | 97.61 | |
| 3ic5_A | 118 | Putative saccharopine dehydrogenase; structural ge | 97.59 | |
| 3ado_A | 319 | Lambda-crystallin; L-gulonate 3-dehydrogenase, str | 97.59 | |
| 1x7d_A | 350 | Ornithine cyclodeaminase; binds NAD+, binds L-orni | 97.55 | |
| 3llv_A | 141 | Exopolyphosphatase-related protein; NAD(P)-binding | 97.48 | |
| 3o8q_A | 281 | Shikimate 5-dehydrogenase I alpha; structural geno | 97.44 | |
| 2z2v_A | 365 | Hypothetical protein PH1688; L-lysine dehydrogenas | 97.44 | |
| 3hwr_A | 318 | 2-dehydropantoate 2-reductase; YP_299159.1, PANE/A | 97.43 | |
| 1p77_A | 272 | Shikimate 5-dehydrogenase; NADPH, oxidoreductase; | 97.36 | |
| 1nyt_A | 271 | Shikimate 5-dehydrogenase; alpha/beta domains, WID | 97.35 | |
| 2qrj_A | 394 | Saccharopine dehydrogenase, NAD+, L-lysine- formin | 97.35 | |
| 2hmt_A | 144 | YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane | 97.34 | |
| 3pwz_A | 272 | Shikimate dehydrogenase 3; alpha-beta, oxidoreduct | 97.34 | |
| 3vtf_A | 444 | UDP-glucose 6-dehydrogenase; two discrete alpha/be | 97.33 | |
| 1omo_A | 322 | Alanine dehydrogenase; two-domain, beta-sandwich-d | 97.31 | |
| 3ego_A | 307 | Probable 2-dehydropantoate 2-reductase; structural | 97.31 | |
| 1vl6_A | 388 | Malate oxidoreductase; TM0542, NAD-dependent malic | 97.29 | |
| 2ewd_A | 317 | Lactate dehydrogenase,; protein-substrate_cofactor | 97.28 | |
| 4hkt_A | 331 | Inositol 2-dehydrogenase; structural genomics, nys | 97.23 | |
| 3c7a_A | 404 | Octopine dehydrogenase; L) stereospecific opine de | 97.21 | |
| 1guz_A | 310 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 97.19 | |
| 1a5z_A | 319 | L-lactate dehydrogenase; oxidoreductase, glycolysi | 97.18 | |
| 3uuw_A | 308 | Putative oxidoreductase with NAD(P)-binding rossm | 97.15 | |
| 4b4u_A | 303 | Bifunctional protein fold; oxidoreductase; HET: NA | 97.15 | |
| 2f1f_A | 164 | Acetolactate synthase isozyme III small subunit; f | 97.14 | |
| 1id1_A | 153 | Putative potassium channel protein; RCK domain, E. | 97.14 | |
| 3euw_A | 344 | MYO-inositol dehydrogenase; protein structure init | 97.13 | |
| 1hyh_A | 309 | L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2 | 97.12 | |
| 3db2_A | 354 | Putative NADPH-dependent oxidoreductase; two domai | 97.1 | |
| 1tlt_A | 319 | Putative oxidoreductase (virulence factor MVIM HO; | 97.09 | |
| 3fbt_A | 282 | Chorismate mutase and shikimate 5-dehydrogenase fu | 97.08 | |
| 1nvt_A | 287 | Shikimate 5'-dehydrogenase; structural genomics, P | 97.08 | |
| 1zpv_A | 91 | ACT domain protein; structural genomics, PSI, prot | 97.03 | |
| 2ho3_A | 325 | Oxidoreductase, GFO/IDH/MOCA family; streptococcus | 97.02 | |
| 3jyo_A | 283 | Quinate/shikimate dehydrogenase; enzyme-cofactor c | 97.02 | |
| 3e9m_A | 330 | Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, | 97.0 | |
| 1xea_A | 323 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 97.0 | |
| 2glx_A | 332 | 1,5-anhydro-D-fructose reductase; NADP(H) dependen | 97.0 | |
| 2ef0_A | 301 | Ornithine carbamoyltransferase; TTHA1199, thermus | 96.98 | |
| 2v6b_A | 304 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ra | 96.97 | |
| 3tnl_A | 315 | Shikimate dehydrogenase; structural genomics, cent | 96.95 | |
| 1pzg_A | 331 | LDH, lactate dehydrogenase; apicomplexa, APAD, tet | 96.94 | |
| 2pc6_A | 165 | Probable acetolactate synthase isozyme III (small; | 96.94 | |
| 3q2i_A | 354 | Dehydrogenase; rossmann fold, UDP-sugar binding, N | 96.89 | |
| 2f06_A | 144 | Conserved hypothetical protein; structural genomic | 96.89 | |
| 3rc1_A | 350 | Sugar 3-ketoreductase; sugar biosynthesis, TDP bin | 96.88 | |
| 3cea_A | 346 | MYO-inositol 2-dehydrogenase; NP_786804.1, oxidore | 96.83 | |
| 2i6u_A | 307 | Otcase, ornithine carbamoyltransferase; X-RAY crys | 96.81 | |
| 1iuk_A | 140 | Hypothetical protein TT1466; structural genomics, | 96.8 | |
| 2hjr_A | 328 | Malate dehydrogenase; malaria, structural genomics | 96.79 | |
| 1ldn_A | 316 | L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA | 96.79 | |
| 1t2d_A | 322 | LDH-P, L-lactate dehydrogenase; ternary complex, o | 96.78 | |
| 3evn_A | 329 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 96.78 | |
| 3e18_A | 359 | Oxidoreductase; dehydrogenase, NAD-binding, struct | 96.76 | |
| 1pg5_A | 299 | Aspartate carbamoyltransferase; 2.60A {Sulfolobus | 96.76 | |
| 2a9f_A | 398 | Putative malic enzyme ((S)-malate:NAD+ oxidoreduct | 96.76 | |
| 4a7p_A | 446 | UDP-glucose dehydrogenase; oxidoreductase, carbohy | 96.76 | |
| 2d59_A | 144 | Hypothetical protein PH1109; COA binding, structur | 96.75 | |
| 3ezy_A | 344 | Dehydrogenase; structural genomics, unknown functi | 96.75 | |
| 3q2o_A | 389 | Phosphoribosylaminoimidazole carboxylase, ATPase; | 96.69 | |
| 3r7f_A | 304 | Aspartate carbamoyltransferase; aspartate transcar | 96.67 | |
| 3bio_A | 304 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 96.67 | |
| 3l4b_C | 218 | TRKA K+ channel protien TM1088B; potassium channel | 96.67 | |
| 1vlv_A | 325 | Otcase, ornithine carbamoyltransferase; TM1097, st | 96.64 | |
| 3c1a_A | 315 | Putative oxidoreductase; ZP_00056571.1, oxidoreduc | 96.63 | |
| 3e82_A | 364 | Putative oxidoreductase; NAD, GFO/IDH/MOCA family, | 96.63 | |
| 1dxh_A | 335 | Ornithine carbamoyltransferase; transcarbamylase; | 96.62 | |
| 1f06_A | 320 | MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH | 96.6 | |
| 3g17_A | 294 | Similar to 2-dehydropantoate 2-reductase; structur | 96.6 | |
| 1pvv_A | 315 | Otcase, ornithine carbamoyltransferase; dodecamer; | 96.57 | |
| 1j5p_A | 253 | Aspartate dehydrogenase; TM1643, structural genomi | 96.56 | |
| 4fcc_A | 450 | Glutamate dehydrogenase; protein complex, rossmann | 96.55 | |
| 3t4e_A | 312 | Quinate/shikimate dehydrogenase; structural genomi | 96.54 | |
| 3l9w_A | 413 | Glutathione-regulated potassium-efflux system Pro | 96.53 | |
| 3ohs_X | 334 | Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; d | 96.5 | |
| 2fgc_A | 193 | Acetolactate synthase, small subunit; regulatory s | 96.5 | |
| 4amu_A | 365 | Ornithine carbamoyltransferase, catabolic; ornithi | 96.49 | |
| 1duv_G | 333 | Octase-1, ornithine transcarbamoylase; enzyme-inhi | 96.49 | |
| 3gg2_A | 450 | Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd | 96.48 | |
| 1ydw_A | 362 | AX110P-like protein; structural genomics, protein | 96.47 | |
| 3mz0_A | 344 | Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; | 96.43 | |
| 1jw9_B | 249 | Molybdopterin biosynthesis MOEB protein; MOEB: mod | 96.43 | |
| 3dfz_A | 223 | SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase | 96.43 | |
| 2aef_A | 234 | Calcium-gated potassium channel MTHK; rossmann fol | 96.42 | |
| 4f2g_A | 309 | Otcase 1, ornithine carbamoyltransferase 1; struct | 96.41 | |
| 4ep1_A | 340 | Otcase, ornithine carbamoyltransferase; structural | 96.4 | |
| 1oth_A | 321 | Protein (ornithine transcarbamoylase); transferase | 96.39 | |
| 3ec7_A | 357 | Putative dehydrogenase; alpha-beta, structural gen | 96.38 | |
| 2p2s_A | 336 | Putative oxidoreductase; YP_050235.1, structural g | 96.37 | |
| 1y6j_A | 318 | L-lactate dehydrogenase; southeast collaboratory f | 96.33 | |
| 4a8t_A | 339 | Putrescine carbamoyltransferase; trabnsferase PALO | 96.31 | |
| 3zwc_A | 742 | Peroxisomal bifunctional enzyme; beta oxidation pa | 96.31 | |
| 2dvm_A | 439 | Malic enzyme, 439AA long hypothetical malate oxido | 96.27 | |
| 3fef_A | 450 | Putative glucosidase LPLD; gulosidase, structural | 96.25 | |
| 1h6d_A | 433 | Precursor form of glucose-fructose oxidoreductase; | 96.25 | |
| 3grf_A | 328 | Ornithine carbamoyltransferase; ornithine transcar | 96.25 | |
| 3qy9_A | 243 | DHPR, dihydrodipicolinate reductase; rossmann fold | 96.22 | |
| 1yqd_A | 366 | Sinapyl alcohol dehydrogenase; lignin, monolignol, | 96.22 | |
| 1ml4_A | 308 | Aspartate transcarbamoylase; beta pleated sheet, p | 96.21 | |
| 3p7m_A | 321 | Malate dehydrogenase; putative dehydrogenase, enzy | 96.19 | |
| 1ur5_A | 309 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 96.19 | |
| 1lld_A | 319 | L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N | 96.18 | |
| 3tpf_A | 307 | Otcase, ornithine carbamoyltransferase; structural | 96.18 | |
| 2q3e_A | 467 | UDP-glucose 6-dehydrogenase; hexamer, structural g | 96.16 | |
| 3pqe_A | 326 | L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas | 96.15 | |
| 2axq_A | 467 | Saccharopine dehydrogenase; rossmann fold variant, | 96.14 | |
| 4a8p_A | 355 | Putrescine carbamoyltransferase; ornithine agmatin | 96.1 | |
| 2w37_A | 359 | Ornithine carbamoyltransferase, catabolic; transca | 96.1 | |
| 3m2t_A | 359 | Probable dehydrogenase; PSI, SGXNY, structural gen | 96.03 | |
| 3nep_X | 314 | Malate dehydrogenase; halophIle, molecular adpatat | 96.02 | |
| 4had_A | 350 | Probable oxidoreductase protein; structural genomi | 96.02 | |
| 1ez4_A | 318 | Lactate dehydrogenase; rossmann fold, oxidoreducta | 96.0 | |
| 3aog_A | 440 | Glutamate dehydrogenase; NAD(H), oxidoreducta; HET | 95.97 | |
| 3csu_A | 310 | Protein (aspartate carbamoyltransferase); transfer | 95.94 | |
| 1npy_A | 271 | Hypothetical shikimate 5-dehydrogenase-like protei | 95.94 | |
| 2zqz_A | 326 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ro | 95.93 | |
| 3ojo_A | 431 | CAP5O; rossmann fold, complex with cofactor NAD an | 95.92 | |
| 3tl2_A | 315 | Malate dehydrogenase; center for structural genomi | 95.91 | |
| 2i6t_A | 303 | Ubiquitin-conjugating enzyme E2-like isoform A; L- | 95.91 | |
| 1ff9_A | 450 | Saccharopine reductase; lysine biosynthesis, alpha | 95.89 | |
| 3gd5_A | 323 | Otcase, ornithine carbamoyltransferase; structural | 95.88 | |
| 3gvi_A | 324 | Malate dehydrogenase; NAD, oxidoreductase, tricarb | 95.87 | |
| 3d0o_A | 317 | L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly | 95.86 | |
| 3i23_A | 349 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 95.86 | |
| 3kux_A | 352 | Putative oxidoreductase; oxidoreductase family, cs | 95.85 | |
| 1b7g_O | 340 | Protein (glyceraldehyde 3-phosphate dehydrogenase; | 95.84 | |
| 3orq_A | 377 | N5-carboxyaminoimidazole ribonucleotide synthetas; | 95.82 | |
| 4fb5_A | 393 | Probable oxidoreductase protein; PSI-biology, nysg | 95.81 | |
| 3sds_A | 353 | Ornithine carbamoyltransferase, mitochondrial; str | 95.79 | |
| 3g79_A | 478 | NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; | 95.78 | |
| 2nu8_A | 288 | Succinyl-COA ligase [ADP-forming] subunit alpha; c | 95.77 | |
| 4fgw_A | 391 | Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxi | 95.76 | |
| 3lk7_A | 451 | UDP-N-acetylmuramoylalanine--D-glutamate ligase; a | 95.72 | |
| 3two_A | 348 | Mannitol dehydrogenase; cinnamyl-alcohol dehydroge | 95.71 | |
| 2vt3_A | 215 | REX, redox-sensing transcriptional repressor REX; | 95.69 | |
| 3vku_A | 326 | L-LDH, L-lactate dehydrogenase; rossmann fold, NAD | 95.68 | |
| 3d6n_B | 291 | Aspartate carbamoyltransferase; reactor, chamber, | 95.67 | |
| 3k92_A | 424 | NAD-GDH, NAD-specific glutamate dehydrogenase; ROC | 95.66 | |
| 3f4l_A | 345 | Putative oxidoreductase YHHX; structural genomics, | 95.66 | |
| 2y0c_A | 478 | BCEC, UDP-glucose dehydrogenase; oxidoreductase, c | 95.57 | |
| 3ew7_A | 221 | LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend | 95.57 | |
| 1xyg_A | 359 | Putative N-acetyl-gamma-glutamyl-phosphate reduct; | 95.55 | |
| 2cdc_A | 366 | Glucose dehydrogenase glucose 1-dehydrogenase, DHG | 95.53 | |
| 1piw_A | 360 | Hypothetical zinc-type alcohol dehydrogenase- like | 95.5 | |
| 4gqa_A | 412 | NAD binding oxidoreductase; structural genomics, P | 95.5 | |
| 3gdo_A | 358 | Uncharacterized oxidoreductase YVAA; structural ge | 95.48 | |
| 3tum_A | 269 | Shikimate dehydrogenase family protein; rossmann-f | 95.48 | |
| 2nvw_A | 479 | Galactose/lactose metabolism regulatory protein GA | 95.47 | |
| 3moi_A | 387 | Probable dehydrogenase; structural genomics, PSI2, | 95.46 | |
| 2tmg_A | 415 | Protein (glutamate dehydrogenase); metabolic role, | 95.42 | |
| 3o9z_A | 312 | Lipopolysaccaride biosynthesis protein WBPB; oxido | 95.41 | |
| 1obb_A | 480 | Maltase, alpha-glucosidase; glycosidase, sulfinic | 95.4 | |
| 3e8x_A | 236 | Putative NAD-dependent epimerase/dehydratase; stru | 95.39 | |
| 3abi_A | 365 | Putative uncharacterized protein PH1688; L-lysine | 95.39 | |
| 2o3j_A | 481 | UDP-glucose 6-dehydrogenase; structural genomics, | 95.38 | |
| 1js1_X | 324 | Transcarbamylase; alpha/beta topology, two domains | 95.34 | |
| 3oa2_A | 318 | WBPB; oxidoreductase, sugar biosynthesis, dehydrog | 95.33 | |
| 4h31_A | 358 | Otcase, ornithine carbamoyltransferase; structural | 95.32 | |
| 1zq6_A | 359 | Otcase, ornithine carbamoyltransferase; alpha/beta | 95.3 | |
| 3btv_A | 438 | Galactose/lactose metabolism regulatory protein GA | 95.3 | |
| 2yfq_A | 421 | Padgh, NAD-GDH, NAD-specific glutamate dehydrogena | 95.27 | |
| 3fhl_A | 362 | Putative oxidoreductase; NAD-binding domain, PSI-2 | 95.24 | |
| 3eag_A | 326 | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME | 95.23 | |
| 1zud_1 | 251 | Adenylyltransferase THIF; thiamin, thiazole, prote | 95.22 | |
| 1oju_A | 294 | MDH, malate dehydrogenase; hyperthermophilic, oxid | 95.19 | |
| 1cf2_P | 337 | Protein (glyceraldehyde-3-phosphate dehydrogenase) | 95.18 | |
| 3dty_A | 398 | Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetram | 95.18 | |
| 2ozp_A | 345 | N-acetyl-gamma-glutamyl-phosphate reductase; amino | 95.18 | |
| 3lou_A | 292 | Formyltetrahydrofolate deformylase; structural gen | 95.16 | |
| 1ys4_A | 354 | Aspartate-semialdehyde dehydrogenase; oxidoreducta | 95.15 | |
| 3obi_A | 288 | Formyltetrahydrofolate deformylase; structural gen | 95.13 | |
| 1oi7_A | 288 | Succinyl-COA synthetase alpha chain; SCS, ligase, | 95.13 | |
| 1cdo_A | 374 | Alcohol dehydrogenase; oxidoreductase, oxidoreduct | 95.12 | |
| 2czc_A | 334 | Glyceraldehyde-3-phosphate dehydrogenase; glycolys | 95.12 | |
| 1mld_A | 314 | Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D | 95.09 | |
| 1hdo_A | 206 | Biliverdin IX beta reductase; foetal metabolism, H | 95.07 | |
| 3v5n_A | 417 | Oxidoreductase; structural genomics, PSI-biology, | 95.04 | |
| 1rjw_A | 339 | ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD | 95.03 | |
| 2jhf_A | 374 | Alcohol dehydrogenase E chain; oxidoreductase, met | 95.02 | |
| 1zh8_A | 340 | Oxidoreductase; TM0312, structural genomics, JO ce | 94.98 | |
| 3ldh_A | 330 | Lactate dehydrogenase; oxidoreductase, CHOH donor, | 94.97 | |
| 1v9l_A | 421 | Glutamate dehydrogenase; protein-NAD complex, oxid | 94.96 | |
| 2xxj_A | 310 | L-LDH, L-lactate dehydrogenase; oxidoreductase, hy | 94.94 | |
| 4ew6_A | 330 | D-galactose-1-dehydrogenase protein; nysgrc, PSI-b | 94.91 | |
| 4e4t_A | 419 | Phosphoribosylaminoimidazole carboxylase, ATPase; | 94.91 | |
| 3u3x_A | 361 | Oxidoreductase; structural genomics, PSI-biology, | 94.91 | |
| 2dt5_A | 211 | AT-rich DNA-binding protein; REX, NADH, NAD, rossm | 94.88 | |
| 2d8a_A | 348 | PH0655, probable L-threonine 3-dehydrogenase; pyro | 94.88 | |
| 2ixa_A | 444 | Alpha-N-acetylgalactosaminidase; NAD, A-ECO conver | 94.87 | |
| 1p0f_A | 373 | NADP-dependent alcohol dehydrogenase; ADH topology | 94.87 | |
| 1uuf_A | 369 | YAHK, zinc-type alcohol dehydrogenase-like protein | 94.87 | |
| 1pjq_A | 457 | CYSG, siroheme synthase; rossman fold, nucleotide | 94.86 | |
| 1e3i_A | 376 | Alcohol dehydrogenase, class II; HET: NAD; 2.08A { | 94.85 | |
| 3ip1_A | 404 | Alcohol dehydrogenase, zinc-containing; structural | 94.83 | |
| 2bma_A | 470 | Glutamate dehydrogenase (NADP+); malaria, drug des | 94.83 | |
| 2nqt_A | 352 | N-acetyl-gamma-glutamyl-phosphate reductase; apopr | 94.83 | |
| 2d4a_B | 308 | Malate dehydrogenase; archaea, hyperthermophIle, o | 94.81 | |
| 3dhn_A | 227 | NAD-dependent epimerase/dehydratase; reductase, PF | 94.81 | |
| 3aoe_E | 419 | Glutamate dehydrogenase; rossmann fold, NADH, oxid | 94.8 | |
| 2fzw_A | 373 | Alcohol dehydrogenase class III CHI chain; S-nitro | 94.79 | |
| 2yfk_A | 418 | Aspartate/ornithine carbamoyltransferase; transcar | 94.79 | |
| 3n0v_A | 286 | Formyltetrahydrofolate deformylase; formyl transfe | 94.78 | |
| 3rui_A | 340 | Ubiquitin-like modifier-activating enzyme ATG7; au | 94.75 | |
| 2we8_A | 386 | Xanthine dehydrogenase; oxidoreductase; 2.30A {Myc | 94.73 | |
| 1pl8_A | 356 | Human sorbitol dehydrogenase; NAD, oxidoreductase; | 94.7 | |
| 4h3v_A | 390 | Oxidoreductase domain protein; structural genomics | 94.7 | |
| 4ekn_B | 306 | Aspartate carbamoyltransferase; atcase, aspartate | 94.68 | |
| 3h9e_O | 346 | Glyceraldehyde-3-phosphate dehydrogenase, testis-; | 94.67 | |
| 1bgv_A | 449 | Glutamate dehydrogenase; oxidoreductase; HET: GLU; | 94.67 | |
| 1lc0_A | 294 | Biliverdin reductase A; oxidoreductase, tetrapyrro | 94.66 | |
| 1pqw_A | 198 | Polyketide synthase; rossmann fold, dimer, structu | 94.64 | |
| 3r6d_A | 221 | NAD-dependent epimerase/dehydratase; structural ge | 94.64 | |
| 3o1l_A | 302 | Formyltetrahydrofolate deformylase; structural gen | 94.63 | |
| 4gmf_A | 372 | Yersiniabactin biosynthetic protein YBTU; rossmann | 94.61 | |
| 3s2e_A | 340 | Zinc-containing alcohol dehydrogenase superfamily; | 94.59 | |
| 4aj2_A | 331 | L-lactate dehydrogenase A chain; oxidoreductase-in | 94.52 | |
| 4ej6_A | 370 | Putative zinc-binding dehydrogenase; structural ge | 94.52 | |
| 3do5_A | 327 | HOM, homoserine dehydrogenase; NP_069768.1, putati | 94.51 | |
| 3r3j_A | 456 | Glutamate dehydrogenase; rossman fold, oxidoreduct | 94.47 | |
| 1kyq_A | 274 | Met8P, siroheme biosynthesis protein Met8; homodim | 94.45 | |
| 1u8f_O | 335 | GAPDH, glyceraldehyde-3-phosphate dehydrogenase, l | 94.42 | |
| 3h2s_A | 224 | Putative NADH-flavin reductase; Q03B84, NESG, LCR1 | 94.41 | |
| 2cf5_A | 357 | Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign | 94.41 | |
| 3qvo_A | 236 | NMRA family protein; structural genomics, PSI-biol | 94.41 | |
| 3q98_A | 399 | Transcarbamylase; rossmann fold, transferase; 2.00 | 94.38 | |
| 1smk_A | 326 | Malate dehydrogenase, glyoxysomal; tricarboxylic c | 94.37 | |
| 2nyi_A | 195 | Unknown protein; protein structure initiative, PSI | 94.37 | |
| 3nrb_A | 287 | Formyltetrahydrofolate deformylase; N-terminal ACT | 94.34 | |
| 1o6z_A | 303 | MDH, malate dehydrogenase; halophilic, ION-binding | 94.34 | |
| 1u8s_A | 192 | Glycine cleavage system transcriptional repressor, | 94.32 | |
| 1e3j_A | 352 | NADP(H)-dependent ketose reductase; oxidoreductase | 94.31 | |
| 1lu9_A | 287 | Methylene tetrahydromethanopterin dehydrogenase; a | 94.27 | |
| 3vtf_A | 444 | UDP-glucose 6-dehydrogenase; two discrete alpha/be | 94.26 | |
| 2fp4_A | 305 | Succinyl-COA ligase [GDP-forming] alpha-chain, mit | 94.25 | |
| 3cps_A | 354 | Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, g | 94.22 | |
| 3uog_A | 363 | Alcohol dehydrogenase; structural genomics, protei | 94.21 | |
| 1u8x_X | 472 | Maltose-6'-phosphate glucosidase; structural genom | 94.21 | |
| 3e5r_O | 337 | PP38, glyceraldehyde-3-phosphate dehydrogenase, cy | 94.2 | |
| 3tqh_A | 321 | Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella | 94.19 | |
| 1iz0_A | 302 | Quinone oxidoreductase; APO-enzyme, riken structur | 94.13 | |
| 3uko_A | 378 | Alcohol dehydrogenase class-3; alcohol dehydrogena | 94.11 | |
| 4eye_A | 342 | Probable oxidoreductase; structural genomics, niai | 94.11 | |
| 3keo_A | 212 | Redox-sensing transcriptional repressor REX; DNA b | 94.07 | |
| 1lnq_A | 336 | MTHK channels, potassium channel related protein; | 94.06 | |
| 3fi9_A | 343 | Malate dehydrogenase; structural genomics, oxidore | 94.05 | |
| 1nvm_B | 312 | Acetaldehyde dehydrogenase (acylating), 4-hydroxy- | 93.94 | |
| 3fpc_A | 352 | NADP-dependent alcohol dehydrogenase; oxydoreducta | 93.92 | |
| 2vn8_A | 375 | Reticulon-4-interacting protein 1; mitochondrion, | 93.81 | |
| 2hcy_A | 347 | Alcohol dehydrogenase 1; tetramer of asymmetric di | 93.75 | |
| 4dup_A | 353 | Quinone oxidoreductase; PSI-biology, structural ge | 93.73 | |
| 3ius_A | 286 | Uncharacterized conserved protein; APC63810, silic | 93.71 | |
| 1f8f_A | 371 | Benzyl alcohol dehydrogenase; rossmann fold, oxido | 93.69 | |
| 3fbg_A | 346 | Putative arginate lyase; structural genomics, unkn | 93.63 | |
| 2rir_A | 300 | Dipicolinate synthase, A chain; structural genomic | 93.62 | |
| 3oqb_A | 383 | Oxidoreductase; structural genomics, protein struc | 93.6 | |
| 2h6e_A | 344 | ADH-4, D-arabinose 1-dehydrogenase; rossman fold, | 93.54 | |
| 3mw9_A | 501 | GDH 1, glutamate dehydrogenase 1; allostery, inhib | 93.52 | |
| 4gsl_A | 615 | Ubiquitin-like modifier-activating enzyme ATG7; ub | 93.5 | |
| 1xgk_A | 352 | Nitrogen metabolite repression regulator NMRA; ros | 93.48 | |
| 2yyy_A | 343 | Glyceraldehyde-3-phosphate dehydrogenase; glyceral | 93.37 | |
| 3kzn_A | 359 | Aotcase, N-acetylornithine carbamoyltransferase; t | 93.34 | |
| 3vh1_A | 598 | Ubiquitin-like modifier-activating enzyme ATG7; au | 93.34 | |
| 2c0c_A | 362 | Zinc binding alcohol dehydrogenase, domain contain | 93.34 | |
| 2ejw_A | 332 | HDH, homoserine dehydrogenase; NAD-dependent, oxid | 93.28 | |
| 3goh_A | 315 | Alcohol dehydrogenase, zinc-containing; NP_718042. | 93.28 | |
| 3dqp_A | 219 | Oxidoreductase YLBE; alpha-beta protein., structur | 93.27 | |
| 1v3u_A | 333 | Leukotriene B4 12- hydroxydehydrogenase/prostaglan | 93.27 | |
| 3ip3_A | 337 | Oxidoreductase, putative; structural genomics, PSI | 93.26 | |
| 3gms_A | 340 | Putative NADPH:quinone reductase; structural genom | 93.25 | |
| 4b7c_A | 336 | Probable oxidoreductase; NADP cofactor, rossmann f | 93.23 | |
| 4hv4_A | 494 | UDP-N-acetylmuramate--L-alanine ligase; MURC, yers | 93.23 | |
| 3qwb_A | 334 | Probable quinone oxidoreductase; rossmann fold, qu | 93.15 | |
| 1mv8_A | 436 | GMD, GDP-mannose 6-dehydrogenase; rossman fold, do | 93.15 | |
| 1hdg_O | 332 | Holo-D-glyceraldehyde-3-phosphate dehydrogenase; o | 93.12 | |
| 3on5_A | 362 | BH1974 protein; structural genomics, joint center | 93.09 | |
| 1vkn_A | 351 | N-acetyl-gamma-glutamyl-phosphate reductase; TM178 | 93.08 | |
| 3i6i_A | 346 | Putative leucoanthocyanidin reductase 1; rossmann | 93.06 | |
| 2gas_A | 307 | Isoflavone reductase; NADPH-dependent reductase, o | 93.05 | |
| 4f3y_A | 272 | DHPR, dihydrodipicolinate reductase; structural ge | 93.03 | |
| 1u8s_A | 192 | Glycine cleavage system transcriptional repressor, | 93.02 | |
| 3oig_A | 266 | Enoyl-[acyl-carrier-protein] reductase [NADH]; fat | 92.92 | |
| 3jv7_A | 345 | ADH-A; dehydrogenase, nucleotide binding, rossmann | 92.89 | |
| 1kol_A | 398 | Formaldehyde dehydrogenase; oxidoreductase; HET: N | 92.88 | |
| 3jyn_A | 325 | Quinone oxidoreductase; rossmann fold, protein-NAD | 92.84 | |
| 2ep5_A | 350 | 350AA long hypothetical aspartate-semialdehyde deh | 92.83 | |
| 1xq6_A | 253 | Unknown protein; structural genomics, protein stru | 92.81 | |
| 3upl_A | 446 | Oxidoreductase; rossmann fold, NADPH binding; 1.50 | 92.78 | |
| 4ina_A | 405 | Saccharopine dehydrogenase; structural genomics, P | 92.77 | |
| 4id9_A | 347 | Short-chain dehydrogenase/reductase; putative dehy | 92.77 | |
| 3gpi_A | 286 | NAD-dependent epimerase/dehydratase; structural ge | 92.73 | |
| 2x5o_A | 439 | UDP-N-acetylmuramoylalanine--D-glutamate ligase; A | 92.71 | |
| 2dq4_A | 343 | L-threonine 3-dehydrogenase; NAD-dependent, oxidor | 92.61 | |
| 3hn7_A | 524 | UDP-N-acetylmuramate-L-alanine ligase; ATP-binding | 92.54 | |
| 1s6y_A | 450 | 6-phospho-beta-glucosidase; hydrolase, structural | 92.48 | |
| 2yv1_A | 294 | Succinyl-COA ligase [ADP-forming] subunit alpha; C | 92.47 | |
| 3ijp_A | 288 | DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, | 92.47 | |
| 2bka_A | 242 | CC3, TAT-interacting protein TIP30; NADPH, PEG600, | 92.44 | |
| 3gqv_A | 371 | Enoyl reductase; medium-chain reductase (MDR super | 92.39 | |
| 1vj0_A | 380 | Alcohol dehydrogenase, zinc-containing; TM0436, st | 92.37 | |
| 1qyc_A | 308 | Phenylcoumaran benzylic ether reductase PT1; NADPH | 92.34 | |
| 1qor_A | 327 | Quinone oxidoreductase; HET: NAP; 2.20A {Escherich | 92.28 | |
| 3pi7_A | 349 | NADH oxidoreductase; groes-like fold, NAD(P)-bindi | 92.28 | |
| 3k5i_A | 403 | Phosphoribosyl-aminoimidazole carboxylase; purine | 92.26 | |
| 2nyi_A | 195 | Unknown protein; protein structure initiative, PSI | 92.21 | |
| 2j3h_A | 345 | NADP-dependent oxidoreductase P1; double bond redu | 92.21 | |
| 3hhp_A | 312 | Malate dehydrogenase; MDH, citric acid cycle, TCA | 92.18 | |
| 3dr3_A | 337 | N-acetyl-gamma-glutamyl-phosphate reductase; csgid | 92.17 | |
| 2b5w_A | 357 | Glucose dehydrogenase; nucleotide binding motif, o | 92.16 | |
| 3pid_A | 432 | UDP-glucose 6-dehydrogenase; rossmann fold, oxidor | 92.14 | |
| 3nv9_A | 487 | Malic enzyme; rossmann fold, oxidoreductase; 2.25A | 92.14 | |
| 3ff4_A | 122 | Uncharacterized protein; structural genomics, PSI- | 92.03 | |
| 2wm3_A | 299 | NMRA-like family domain containing protein 1; unkn | 91.99 | |
| 2eih_A | 343 | Alcohol dehydrogenase; zinc ION binding protein, s | 91.94 | |
| 2f06_A | 144 | Conserved hypothetical protein; structural genomic | 91.89 | |
| 3c8m_A | 331 | Homoserine dehydrogenase; structural genomics, APC | 91.82 | |
| 2dph_A | 398 | Formaldehyde dismutase; dismutation of aldehydes, | 91.8 | |
| 3ruf_A | 351 | WBGU; rossmann fold, UDP-hexose 4-epimerase, isome | 91.77 | |
| 2zcu_A | 286 | Uncharacterized oxidoreductase YTFG; alpha-beta sa | 91.76 | |
| 3mtj_A | 444 | Homoserine dehydrogenase; rossmann-fold, PSI, MCSG | 91.67 | |
| 3nkl_A | 141 | UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fo | 91.58 | |
| 2r6j_A | 318 | Eugenol synthase 1; phenylpropene, PIP reductase, | 91.57 | |
| 4g65_A | 461 | TRK system potassium uptake protein TRKA; structur | 91.57 | |
| 1gad_O | 330 | D-glyceraldehyde-3-phosphate dehydrogenase; oxidor | 91.52 | |
| 4a0s_A | 447 | Octenoyl-COA reductase/carboxylase; oxidoreductase | 91.48 | |
| 2j8z_A | 354 | Quinone oxidoreductase; medium-chain dehydrogenase | 91.44 | |
| 1qyd_A | 313 | Pinoresinol-lariciresinol reductase; NADPH-depende | 91.44 | |
| 4dvj_A | 363 | Putative zinc-dependent alcohol dehydrogenase Pro; | 91.28 | |
| 1wly_A | 333 | CAAR, 2-haloacrylate reductase; NADPH-dependent ox | 91.27 | |
| 3orf_A | 251 | Dihydropteridine reductase; alpha-beta-alpha sandw | 91.27 | |
| 3cmc_O | 334 | GAPDH, glyceraldehyde-3-phosphate dehydrogenase; m | 91.25 | |
| 3h8v_A | 292 | Ubiquitin-like modifier-activating enzyme 5; rossm | 91.25 | |
| 2r00_A | 336 | Aspartate-semialdehyde dehydrogenase; conformation | 91.2 | |
| 1dlj_A | 402 | UDP-glucose dehydrogenase; rossmann fold, ternary | 91.08 | |
| 3ijr_A | 291 | Oxidoreductase, short chain dehydrogenase/reducta; | 91.07 | |
| 1ebf_A | 358 | Homoserine dehydrogenase; dinucleotide, NAD, dimer | 91.06 |
| >1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-101 Score=867.87 Aligned_cols=520 Identities=35% Similarity=0.532 Sum_probs=492.1
Q ss_pred CCCCeEEEeCCCCHhHHHHhhcCCcEEEecCCCHhHHHhhcCCCeEEEEcCCCCCCHHHHHhcCCcceeEEecccccCcc
Q 006864 88 TPKPTILVSEKLGEAGLAILRSFGNVECLYDLSPEALCEKISQCDALIVRSGTKVTRSVFEAANGKLKVVGRAGVGIDNV 167 (628)
Q Consensus 88 ~~~~~vlv~~~l~~~~~~~l~~~~~v~~~~~~~~~el~~~~~~~d~liv~~~~~v~~~~l~~~~~~Lk~I~~~g~G~D~i 167 (628)
|.++|||+++++.++.++.|++..++++....+.+++.+.+++||++++++.+++++++++++ |+||||+++|+|||||
T Consensus 2 m~~~~vl~~~~~~~~~~~~l~~~~~v~~~~~~~~~~~~~~~~~~d~li~~~~~~~~~~~l~~~-~~Lk~i~~~~~G~d~i 80 (529)
T 1ygy_A 2 VSLPVVLIADKLAPSTVAALGDQVEVRWVDGPDRDKLLAAVPEADALLVRSATTVDAEVLAAA-PKLKIVARAGVGLDNV 80 (529)
T ss_dssp -CCCEEEECSSCCGGGGTTSCSSSEEEECCTTSHHHHHHHGGGCSEEEECSSSCBCHHHHHTC-TTCCEEEESSSCCTTB
T ss_pred CCCcEEEEeCCCCHHHHHHHhcCceEEEcCCCCHHHHHHHhcCCEEEEEcCCCCCCHHHHhhC-CCCcEEEECCcCcCcc
Confidence 457899999999999888887766777766678899999999999999998889999999987 5999999999999999
Q ss_pred cHhHHHhcCceEEcCCCCChhhHHHHHHHHHHHHHHchhHHHHHHHcCcccccccceeeecCCeEEEEecChhHHHHHHH
Q 006864 168 DLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARR 247 (628)
Q Consensus 168 Dl~aa~~~GI~V~n~p~~~~~avAE~~l~l~L~~~R~i~~~~~~~~~g~W~~~~~~g~~l~GktiGIIGlG~IG~~vA~~ 247 (628)
|+++|+++||.|+|+|++|+.+||||++++||+++|+++++++.+++|+|.+..+.|.+++|||+||||+|+||+++|++
T Consensus 81 d~~~~~~~gi~v~n~p~~~~~~vAE~~~~~~l~~~R~~~~~~~~~~~g~w~~~~~~~~~l~g~~vgIIG~G~IG~~vA~~ 160 (529)
T 1ygy_A 81 DVDAATARGVLVVNAPTSNIHSAAEHALALLLAASRQIPAADASLREHTWKRSSFSGTEIFGKTVGVVGLGRIGQLVAQR 160 (529)
T ss_dssp CHHHHHHTTCEEECCTTSSHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCGGGCCBCCCTTCEEEEECCSHHHHHHHHH
T ss_pred CHhHHHhCCeEEEECCCcchHHHHHHHHHHHHHHHhhhHHHHHHHHhCCCcccCcCccccCCCEEEEEeeCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999987778999999999999999999999999
Q ss_pred HHcCCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEcCCCCccccccccHHHHhcCCCCcEEEEcCCCchhcHH
Q 006864 248 AKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEE 327 (628)
Q Consensus 248 l~~~G~~V~~~d~~~~~~~a~~~g~~~~sl~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~~vde~ 327 (628)
|+++||+|++|||+...+.+.+.|+..+++++++++||+|++|+|++++|+++++++.+++||+|++|||++||+++|++
T Consensus 161 l~~~G~~V~~~d~~~~~~~a~~~g~~~~~l~e~~~~aDvV~l~~P~~~~t~~~i~~~~~~~~k~g~ilin~arg~iv~~~ 240 (529)
T 1ygy_A 161 IAAFGAYVVAYDPYVSPARAAQLGIELLSLDDLLARADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAARGGLVDEA 240 (529)
T ss_dssp HHTTTCEEEEECTTSCHHHHHHHTCEECCHHHHHHHCSEEEECCCCSTTTTTCBCHHHHTTSCTTEEEEECSCTTSBCHH
T ss_pred HHhCCCEEEEECCCCChhHHHhcCcEEcCHHHHHhcCCEEEECCCCchHHHHHhCHHHHhCCCCCCEEEECCCCchhhHH
Confidence 99999999999998866667778888789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCeeEEEeeccCCCCCCCCCccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCcccCCCCC
Q 006864 328 ALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKEAQEGVAIEIAEAVVGALRGELSATAINAPMVP 407 (628)
Q Consensus 328 aL~~aL~~g~i~ga~lDV~~~EP~~~~~~L~~~~nvilTPHig~~T~ea~~~~~~~~~~~i~~~l~g~~~~~~vn~p~~~ 407 (628)
+|+++|++|+++||++|||+.||+ +++|||+++|||+|||++++|.|++++++..+++++.+++.|+.+.+.||.|.
T Consensus 241 aL~~al~~g~i~ga~lDv~~~eP~-~~~~L~~~~~vilTPh~~~~t~ea~~~~~~~~~~~l~~~l~~~~~~~~v~~~~-- 317 (529)
T 1ygy_A 241 ALADAITGGHVRAAGLDVFATEPC-TDSPLFELAQVVVTPHLGASTAEAQDRAGTDVAESVRLALAGEFVPDAVNVGG-- 317 (529)
T ss_dssp HHHHHHHTSSEEEEEESSCSSSSC-SCCGGGGCTTEEECSSCSSCBHHHHHHHHHHHHHHHHHHHTTCCCTTBCSCCS--
T ss_pred HHHHHHHcCCccEEEEeeccCCCC-CCchHHhCCCEEEccccCCCCHHHHHHHHHHHHHHHHHHHcCCCCCcccCCcc--
Confidence 999999999999999999999997 68999999999999999999999999999999999999999999999999875
Q ss_pred cccccccccHHHHHHHHhHHHHHHhcCCCCceEEEEEEeecCCCCCCCcccchHHHHHhhccccccCcccccchHhHHhh
Q 006864 408 SEVLSELAPYVVLAKKLGRLAVQLVSGGSGIKSVKLIYRSARDPDDLDTRILRAMITKGIIEPISASFINLVNADFTAKQ 487 (628)
Q Consensus 408 ~~~~~~~~p~~~lAerlG~la~qL~~g~~~~~~v~i~~~Gs~a~~~~~~~~~~~a~l~GlL~~~~~~~vnlvNA~~iAke 487 (628)
++.++++.||+.||+++|+++.||++| +|++++++|+|+++ + .+++++++++++|+|+.+.++.+|++||+.+|++
T Consensus 318 ~~~hd~i~P~l~La~~lg~~~~qla~g--~~~ditria~G~~~-~-~~i~~~n~a~l~g~L~~~~~~~~~~vnA~~iA~e 393 (529)
T 1ygy_A 318 GVVNEEVAPWLDLVRKLGVLAGVLSDE--LPVSLSVQVRGELA-A-EEVEVLRLSALRGLFSAVIEDAVTFVNAPALAAE 393 (529)
T ss_dssp TTSCTTTTTHHHHHHHHHHHHHHTSSS--CCSEEEEEEEEGGG-G-SCCHHHHHHHHHHHTGGGSCTTCCCCCHHHHHHH
T ss_pred cccchhhhhHHHHHHHHHHHHHHHhCC--CceEEEEEEEeecc-c-cCCcHHHHHHHHHhcCCCCCCCccccCHHHHHHH
Confidence 889999999999999999999999998 89999999999998 6 6799999999999999999888999999999999
Q ss_pred cCceEEEEEeecCCCCCCCCceEEEEEEecccccceeeCCCcEEEEEEEEEC--CeeEEEEECceeEEeecCCcEEEEec
Q 006864 488 KGLRISEERVVADSSPEFPIDSIQVQLSNVDSKFAAAVSENGEISIEGKVKF--GIPHLTRVGSFGVDASLEGNLILCRQ 565 (628)
Q Consensus 488 ~GI~i~~~~~~~~~~~~~~~ntv~v~l~~~~~~~~~~~~~~~~~~v~Gt~~g--G~~~I~~Idgf~Vd~~~~~~~Llv~~ 565 (628)
+||++.|.+.+... .|+|+++++++ +.++++++|.|+|+| |.++|++||||++++.|++|+|++.|
T Consensus 394 ~Gi~i~~~~~~~~~---~~~n~v~v~~~---------~~~~~~~~v~Gt~~gg~g~~~i~~i~g~~v~~~~~~~~l~v~~ 461 (529)
T 1ygy_A 394 RGVTAEICKASESP---NHRSVVDVRAV---------GADGSVVTVSGTLYGPQLSQKIVQINGRHFDLRAQGINLIIHY 461 (529)
T ss_dssp HSCEEEEEEESCCS---SSSEEEEEEEE---------CTTSCEEEEEEEEETTTTEEEEEEETTEEEEEESCSEEEEEEE
T ss_pred cCCEEEEEEccCCC---CCCCEEEEEEE---------ECCCCEEEEEEEEeCCCCcEEEEEECCEEEEecCCccEEEEEc
Confidence 99999998866443 79999999997 347889999999997 49999999999999999999999999
Q ss_pred cCCCCchhhHHhhhhcCCccccceEEeeeecCccEEEEEEeCCCCCHHHHHHHhcccCcccc
Q 006864 566 VDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDEEPNQDSLKEIGKVHFVARI 627 (628)
Q Consensus 566 ~D~PGvIa~V~~iL~~~~INIa~m~v~R~~~gg~Al~~i~vD~~~~~~~l~~L~~l~~v~~v 627 (628)
.|+||+|++|+++|++++|||++|+++|..+++.|+|+|++|++++++++++|+++++|.++
T Consensus 462 ~D~PG~I~~v~~~Lg~~~INIa~m~v~r~~~~~~a~~~i~vd~~~~~~~l~~l~~~~~i~~v 523 (529)
T 1ygy_A 462 VDRPGALGKIGTLLGTAGVNIQAAQLSEDAEGPGATILLRLDQDVPDDVRTAIAAAVDAYKL 523 (529)
T ss_dssp SCCTTHHHHHHHHHHHTTCCEEEEEEEECSSSSCEEEEEEESSCCCHHHHHHHHHHHTEEEE
T ss_pred CCCCchHHHHHHHHHhcCCCeeeEEEecCCCCCEEEEEEEECCCCCHHHHHHHhcCCCccEE
Confidence 99999999999999999999999999999999999999999999999999999999999875
|
| >1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-79 Score=666.02 Aligned_cols=389 Identities=31% Similarity=0.440 Sum_probs=345.7
Q ss_pred CCCeEEEeCCCCHhHHHHhhcCC--cEEEec-CCCHhHHHhhcCCCeEEEEcCCCCCCHHHHHhcCCcceeEEecccccC
Q 006864 89 PKPTILVSEKLGEAGLAILRSFG--NVECLY-DLSPEALCEKISQCDALIVRSGTKVTRSVFEAANGKLKVVGRAGVGID 165 (628)
Q Consensus 89 ~~~~vlv~~~l~~~~~~~l~~~~--~v~~~~-~~~~~el~~~~~~~d~liv~~~~~v~~~~l~~~~~~Lk~I~~~g~G~D 165 (628)
.|+|||+++++++.+++.|++.+ ++++.. .++++++.+.++++|++++++.+++++++++++ |+||+|+++|+|+|
T Consensus 3 ~~~kil~~~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~l~~~~~~~d~l~~~~~~~~~~~~l~~~-~~Lk~I~~~~~G~d 81 (404)
T 1sc6_A 3 DKIKFLLVEGVHQKALESLRAAGYTNIEFHKGALDDEQLKESIRDAHFIGLRSRTHLTEDVINAA-EKLVAIGAFAIGTN 81 (404)
T ss_dssp SSCCEEECSCCCHHHHHHHHHTTCCCEEECSSCCCHHHHHHHTTSCSEEEECSSCCBCHHHHHHC-SSCCEEEECSSCCT
T ss_pred CceEEEEeCCCCHHHHHHHHhCCCcEEEEcCCCCCHHHHHHHhcCCeEEEEcCCCCCCHHHHhhC-CCCcEEEECCcccC
Confidence 46789999999999999998763 676643 568899999999999999999889999999998 59999999999999
Q ss_pred cccHhHHHhcCceEEcCCCCChhhHHHHHHHHHHHHHHchhHHHHHHHcCcccccccceeeecCCeEEEEecChhHHHHH
Q 006864 166 NVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVA 245 (628)
Q Consensus 166 ~iDl~aa~~~GI~V~n~p~~~~~avAE~~l~l~L~~~R~i~~~~~~~~~g~W~~~~~~g~~l~GktiGIIGlG~IG~~vA 245 (628)
|||+++|+++||.|+|+|++|+.+||||++++||+++|+++++++.+++|+|.+..+.|.+++|||+||||+|+||+.+|
T Consensus 82 ~iD~~~a~~~GI~V~n~p~~n~~~vAE~~~~~~L~~~R~i~~~~~~~~~g~W~~~~~~~~el~gktlGiIGlG~IG~~vA 161 (404)
T 1sc6_A 82 QVDLDAAAKRGIPVFNAPFSNTRSVAELVIGELLLLLRGVPEANAKAHRGVGNKLAAGSFEARGKKLGIIGYGHIGTQLG 161 (404)
T ss_dssp TBCHHHHHHTTCCEECCTTTTHHHHHHHHHHHHHHHHHTHHHHHHHHHHTCCC-----CCCSTTCEEEEECCSHHHHHHH
T ss_pred ccCHHHHHhCCCEEEecCcccHHHHHHHHHHHHHHHHhChHHHHHHHHcCCccccCCCccccCCCEEEEEeECHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999998766778999999999999999999999
Q ss_pred HHHHcCCCEEEEECCCCChhHHHHcCCccc-CHHHHhccCCEEEEcCCCCccccccccHHHHhcCCCCcEEEEcCCCchh
Q 006864 246 RRAKGLGMNVIAHDPYAPADKARAVGVELV-SFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVI 324 (628)
Q Consensus 246 ~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~-sl~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~~v 324 (628)
++|++|||+|++|||+.... ..++..+ ++++++++||+|++|+|++++|+++|+++.|++||+|++|||++||+++
T Consensus 162 ~~l~~~G~~V~~~d~~~~~~---~~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~ga~lIN~aRg~~v 238 (404)
T 1sc6_A 162 ILAESLGMYVYFYDIENKLP---LGNATQVQHLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVV 238 (404)
T ss_dssp HHHHHTTCEEEEECSSCCCC---CTTCEECSCHHHHHHHCSEEEECCCSSTTTTTCBCHHHHHHSCTTEEEEECSCSSSB
T ss_pred HHHHHCCCEEEEEcCCchhc---cCCceecCCHHHHHhcCCEEEEccCCChHHHHHhhHHHHhhcCCCeEEEECCCChHH
Confidence 99999999999999975321 1124444 8999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHhCCCeeEEEeeccCCCCCCC----CCccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCc
Q 006864 325 DEEALVRALDSGVVAQAALDVFTEEPPAK----DSKLVQHENVTVTPHLGASTKEAQEGVAIEIAEAVVGALRGELSATA 400 (628)
Q Consensus 325 de~aL~~aL~~g~i~ga~lDV~~~EP~~~----~~~L~~~~nvilTPHig~~T~ea~~~~~~~~~~~i~~~l~g~~~~~~ 400 (628)
|+++|+++|++|+++||+||||+.||++. ++|||++|||++|||+|++|.|++++++..+++|+.+|++|+.+.+.
T Consensus 239 d~~aL~~aL~~g~i~gA~lDVf~~EP~~~~~~~~~pL~~~~nvilTPHi~~~T~ea~~~~~~~~~~nl~~~l~g~~~~~~ 318 (404)
T 1sc6_A 239 DIPALADALASKHLAGAAIDVFPTEPATNSDPFTSPLAEFDNVLLTPHIGGSTQEAQENIGLEVAGKLIKYSDNGSTLSA 318 (404)
T ss_dssp CHHHHHHHHHTTSEEEEEEEC---------CTTTGGGTTCTTEEEECCCSCCSHHHHHHHHHHHHHHHHHHHHHCCCTTB
T ss_pred hHHHHHHHHHcCCccEEEEeecCCCCCCccccccchhhcCCCEEECCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCcce
Confidence 99999999999999999999999999864 57999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCcccccccccHHHHHHHHhHHHHHHhcCCCCceEEEEEEeecCCCCCCCcccchHHHHHhhccccccCcccccc
Q 006864 401 INAPMVPSEVLSELAPYVVLAKKLGRLAVQLVSGGSGIKSVKLIYRSARDPDDLDTRILRAMITKGIIEPISASFINLVN 480 (628)
Q Consensus 401 vn~p~~~~~~~~~~~p~~~lAerlG~la~qL~~g~~~~~~v~i~~~Gs~a~~~~~~~~~~~a~l~GlL~~~~~~~vnlvN 480 (628)
||+|.+.. +
T Consensus 319 vn~p~~~~----------------------------~------------------------------------------- 327 (404)
T 1sc6_A 319 VNFPEVSL----------------------------P------------------------------------------- 327 (404)
T ss_dssp SSSCCCCC----------------------------C-------------------------------------------
T ss_pred eccccccc----------------------------C-------------------------------------------
Confidence 99997650 0
Q ss_pred hHhHHhhcCceEEEEEeecCCCCCCCCceEEEEEEecccccceeeCCCcEEEEEEEEECCeeEEEEECceeEEeecCCcE
Q 006864 481 ADFTAKQKGLRISEERVVADSSPEFPIDSIQVQLSNVDSKFAAAVSENGEISIEGKVKFGIPHLTRVGSFGVDASLEGNL 560 (628)
Q Consensus 481 A~~iAke~GI~i~~~~~~~~~~~~~~~ntv~v~l~~~~~~~~~~~~~~~~~~v~Gt~~gG~~~I~~Idgf~Vd~~~~~~~ 560 (628)
. + | .+.
T Consensus 328 --------------------~----~-~-------------------------------------------------~~r 333 (404)
T 1sc6_A 328 --------------------L----H-G-------------------------------------------------GRR 333 (404)
T ss_dssp --------------------C----C-S-------------------------------------------------SEE
T ss_pred --------------------c----C-C-------------------------------------------------cce
Confidence 0 0 0 123
Q ss_pred EEEeccCCCCchhhHHhhhhcCCccccceEEeeeecCccEEEEEEeCCC--CCHHHHHHHhcccCccccC
Q 006864 561 ILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDEE--PNQDSLKEIGKVHFVARIL 628 (628)
Q Consensus 561 Llv~~~D~PGvIa~V~~iL~~~~INIa~m~v~R~~~gg~Al~~i~vD~~--~~~~~l~~L~~l~~v~~v~ 628 (628)
|++.|+|+||+|++|+++|+++||||+.|++.| +|+.|+|++++|++ ++++++++|++++++.+++
T Consensus 334 l~~~h~d~PGvi~~i~~iL~~~~iNIa~m~~~r--~g~~A~~vidvD~~~~~~~~~l~~l~~i~~v~~vr 401 (404)
T 1sc6_A 334 LMHIHENRPGVLTALNKIFAEQGVNIAAQYLQT--SAQMGYVVIDIEADEDVAEKALQAMKAIPGTIRAR 401 (404)
T ss_dssp EEEEEESCTTHHHHHHHHHHHTTCEEEEEEEEE--CSSEEEEEEEEECCHHHHHHHHHHHHTSTTEEEEE
T ss_pred EEEEeCCCCCHHHHHHHHHHHcCCCHHHhhccC--CCCEEEEEEEcCCCCCCCHHHHHHHhcCCCeeEEE
Confidence 678899999999999999999999999999998 88999999999999 9999999999999998764
|
| >3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-73 Score=614.35 Aligned_cols=392 Identities=32% Similarity=0.479 Sum_probs=347.3
Q ss_pred cCCCCeEEEeCCCCHhHHHHhhcCC--cEEEec-CCCHhHHHhhcCCCeEEEEcCCCCCCHHHHHhcCCcceeEEecccc
Q 006864 87 VTPKPTILVSEKLGEAGLAILRSFG--NVECLY-DLSPEALCEKISQCDALIVRSGTKVTRSVFEAANGKLKVVGRAGVG 163 (628)
Q Consensus 87 ~~~~~~vlv~~~l~~~~~~~l~~~~--~v~~~~-~~~~~el~~~~~~~d~liv~~~~~v~~~~l~~~~~~Lk~I~~~g~G 163 (628)
++.|+|||+++.+++.+.+.|++.+ ++++.. .++++++.+.++++|++++++.+++++++++++ |+||+|+++|+|
T Consensus 12 ~~~~~kIl~~~~i~~~~~~~l~~~g~~~v~~~~~~~~~~~l~~~~~~~d~l~v~~~~~i~~~~l~~~-p~Lk~I~~~~~G 90 (416)
T 3k5p_A 12 SRDRINVLLLEGISQTAVEYFKSSGYTNVTHLPKALDKADLIKAISSAHIIGIRSRTQLTEEIFAAA-NRLIAVGCFSVG 90 (416)
T ss_dssp CGGGSCEEECSCCCHHHHHHHHHTTCCCEEECSSCCCHHHHHHHHTTCSEEEECSSCCBCHHHHHHC-TTCCEEEECSSC
T ss_pred CCCCcEEEEECCCCHHHHHHHHHCCCcEEEECCCCCCHHHHHHHccCCEEEEEcCCCCCCHHHHHhC-CCcEEEEECccc
Confidence 4457899999999999999998764 666543 468899999999999999998889999999998 599999999999
Q ss_pred cCcccHhHHHhcCceEEcCCCCChhhHHHHHHHHHHHHHHchhHHHHHHHcCcccccccceeeecCCeEEEEecChhHHH
Q 006864 164 IDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSE 243 (628)
Q Consensus 164 ~D~iDl~aa~~~GI~V~n~p~~~~~avAE~~l~l~L~~~R~i~~~~~~~~~g~W~~~~~~g~~l~GktiGIIGlG~IG~~ 243 (628)
+||||+++|+++||.|+|+|++|+.+||||++++||+++|+++++++.+++|+|.+..+.+.+++|||+||||+|+||+.
T Consensus 91 ~d~IDl~~a~~~GI~V~n~p~~n~~aVAE~~l~l~L~l~R~i~~~~~~~~~g~W~~~~~~~~el~gktvGIIGlG~IG~~ 170 (416)
T 3k5p_A 91 TNQVELKAARKRGIPVFNAPFSNTRSVAELVIGEIIMLMRRIFPRSVSAHAGGWEKTAIGSREVRGKTLGIVGYGNIGSQ 170 (416)
T ss_dssp CTTBCHHHHHHTTCCEECCSSTTHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCCTTCCCSTTCEEEEECCSHHHHH
T ss_pred cCccCHHHHHhcCcEEEeCCCcccHHHHHHHHHHHHHHhcccHHHHHhhhcccccccCCCCccCCCCEEEEEeeCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999998777789999999999999999999
Q ss_pred HHHHHHcCCCEEEEECCCCChhHHHHcCC-cccCHHHHhccCCEEEEcCCCCccccccccHHHHhcCCCCcEEEEcCCCc
Q 006864 244 VARRAKGLGMNVIAHDPYAPADKARAVGV-ELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGG 322 (628)
Q Consensus 244 vA~~l~~~G~~V~~~d~~~~~~~a~~~g~-~~~sl~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~ 322 (628)
+|+++++|||+|++||++..... .+. ...++++++++||+|++|+|++++|+++|+++.|++||+|++|||++||+
T Consensus 171 vA~~l~~~G~~V~~yd~~~~~~~---~~~~~~~sl~ell~~aDvV~lhvPlt~~T~~li~~~~l~~mk~gailIN~aRG~ 247 (416)
T 3k5p_A 171 VGNLAESLGMTVRYYDTSDKLQY---GNVKPAASLDELLKTSDVVSLHVPSSKSTSKLITEAKLRKMKKGAFLINNARGS 247 (416)
T ss_dssp HHHHHHHTTCEEEEECTTCCCCB---TTBEECSSHHHHHHHCSEEEECCCC-----CCBCHHHHHHSCTTEEEEECSCTT
T ss_pred HHHHHHHCCCEEEEECCcchhcc---cCcEecCCHHHHHhhCCEEEEeCCCCHHHhhhcCHHHHhhCCCCcEEEECCCCh
Confidence 99999999999999998743211 122 23589999999999999999999999999999999999999999999999
Q ss_pred hhcHHHHHHHHhCCCeeEEEeeccCCCCCCCC----CccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCC
Q 006864 323 VIDEEALVRALDSGVVAQAALDVFTEEPPAKD----SKLVQHENVTVTPHLGASTKEAQEGVAIEIAEAVVGALRGELSA 398 (628)
Q Consensus 323 ~vde~aL~~aL~~g~i~ga~lDV~~~EP~~~~----~~L~~~~nvilTPHig~~T~ea~~~~~~~~~~~i~~~l~g~~~~ 398 (628)
++|++||+++|++|+|+||+||||+.||++.+ +|||++|||++|||+|++|.|++++++..+++|+.+|++++.+.
T Consensus 248 vvd~~aL~~aL~~g~i~gAalDVf~~EP~~~~~~~~~pL~~~~nvilTPHig~~T~ea~~~~~~~~~~nl~~~l~~g~~~ 327 (416)
T 3k5p_A 248 DVDLEALAKVLQEGHLAGAAIDVFPVEPASNGERFSTPLQGLENVILTPHIGGSTEEAQERIGTEVTRKLVEYSDVGSTV 327 (416)
T ss_dssp SBCHHHHHHHHHTTSEEEEEECCCSSCCSSTTSCCCCTTTTCTTEEECCSCTTCCHHHHHHHHHHHHHHHHHHHHHCCCT
T ss_pred hhhHHHHHHHHHcCCccEEEeCCCCCCCCCcccccchhHhcCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHHHhhCCCC
Confidence 99999999999999999999999999998765 79999999999999999999999999999999999999999999
Q ss_pred CcccCCCCCcccccccccHHHHHHHHhHHHHHHhcCCCCceEEEEEEeecCCCCCCCcccchHHHHHhhccccccCcccc
Q 006864 399 TAINAPMVPSEVLSELAPYVVLAKKLGRLAVQLVSGGSGIKSVKLIYRSARDPDDLDTRILRAMITKGIIEPISASFINL 478 (628)
Q Consensus 399 ~~vn~p~~~~~~~~~~~p~~~lAerlG~la~qL~~g~~~~~~v~i~~~Gs~a~~~~~~~~~~~a~l~GlL~~~~~~~vnl 478 (628)
+.||+|.+. + | . ..
T Consensus 328 ~~Vn~p~~~---~----~-----------------~-------------------------------------~~----- 341 (416)
T 3k5p_A 328 GAVNFPQVQ---L----P-----------------P-------------------------------------RP----- 341 (416)
T ss_dssp TBSSSCCCC---C----C-----------------C-------------------------------------CS-----
T ss_pred ceeeCCCcC---C----C-----------------C-------------------------------------CC-----
Confidence 999986432 1 0 0 00
Q ss_pred cchHhHHhhcCceEEEEEeecCCCCCCCCceEEEEEEecccccceeeCCCcEEEEEEEEECCeeEEEEECceeEEeecCC
Q 006864 479 VNADFTAKQKGLRISEERVVADSSPEFPIDSIQVQLSNVDSKFAAAVSENGEISIEGKVKFGIPHLTRVGSFGVDASLEG 558 (628)
Q Consensus 479 vNA~~iAke~GI~i~~~~~~~~~~~~~~~ntv~v~l~~~~~~~~~~~~~~~~~~v~Gt~~gG~~~I~~Idgf~Vd~~~~~ 558 (628)
+..+
T Consensus 342 -----------------------------~~~r----------------------------------------------- 345 (416)
T 3k5p_A 342 -----------------------------TGTR----------------------------------------------- 345 (416)
T ss_dssp -----------------------------SSEE-----------------------------------------------
T ss_pred -----------------------------CceE-----------------------------------------------
Confidence 0011
Q ss_pred cEEEEeccCCCCchhhHHhhhhcCCccccceEEeeeecCccEEEEEEeC--CCCCHHHHHHHhcccCccccC
Q 006864 559 NLILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVD--EEPNQDSLKEIGKVHFVARIL 628 (628)
Q Consensus 559 ~~Llv~~~D~PGvIa~V~~iL~~~~INIa~m~v~R~~~gg~Al~~i~vD--~~~~~~~l~~L~~l~~v~~v~ 628 (628)
+++.|+++|||+++|.++|+++||||.+|... .+|+.|..++.+| ++.+++++++|++++++.++|
T Consensus 346 --~~~~h~n~p~~~~~i~~~~~~~~~ni~~~~~~--~~~~~~y~~~d~~~~~~~~~~~~~~l~~~~~~~~~r 413 (416)
T 3k5p_A 346 --FMHVHENRPGILNSLMNVFSHHHINIASQFLQ--TDGEVGYLVMEADGVGEASDAVLQEIREIPGTIRAR 413 (416)
T ss_dssp --EEEEECCCTTHHHHHHHHHHHTTCCEEEEEEE--ECSSCEEEEEEECCCHHHHHHHHHHHHTSTTEEEEE
T ss_pred --EEEEecCCccHHHHHHHHHHHcCCCHHHHhcc--CCCceEEEEEEecCCCCCcHHHHHHHHhCCCEEEEE
Confidence 23569999999999999999999999999874 6788999999999 788889999999999998864
|
| >4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-70 Score=579.68 Aligned_cols=316 Identities=25% Similarity=0.460 Sum_probs=291.3
Q ss_pred cccCCCCeEEEeCCCCHhHHHHhhcCCcEEEec---CCCHhHHHhhcCCCeEEEEcCCCCCCHHHHHhcCCcceeEEecc
Q 006864 85 QAVTPKPTILVSEKLGEAGLAILRSFGNVECLY---DLSPEALCEKISQCDALIVRSGTKVTRSVFEAANGKLKVVGRAG 161 (628)
Q Consensus 85 ~~~~~~~~vlv~~~l~~~~~~~l~~~~~v~~~~---~~~~~el~~~~~~~d~liv~~~~~v~~~~l~~~~~~Lk~I~~~g 161 (628)
+..+.|||||++++++++.++.|++.+++.+.. ..+++++.+.++++|++++++.++++++++++++|+||+|+++|
T Consensus 23 ~~~~~~~kvlv~~~~~~~~~~~l~~~~~v~~~~~~~~~~~~~l~~~~~~~d~li~~~~~~i~~~~l~~~~~~Lk~I~~~~ 102 (345)
T 4g2n_A 23 MSTHPIQKAFLCRRFTPAIEAELRQRFDLEVNLEDTVLTPSGIASRAHGAEVLFVTATEAITAEVIRKLQPGLKTIATLS 102 (345)
T ss_dssp ----CCCEEEESSCCCHHHHHHHHHHSEEEECTTCCCCCHHHHHHHTTTCSEEEECTTSCBCHHHHHHTTTTCCEEEESS
T ss_pred cccCCCCEEEEeCCCCHHHHHHHHccCCEEEecCCCCCCHHHHHHHhcCCeEEEEeCCCCCCHHHHHhhcCCceEEEEcC
Confidence 345679999999999999999999888877643 35789999999999999999878999999998756999999999
Q ss_pred cccCcccHhHHHhcCceEEcCCCCChhhHHHHHHHHHHHHHHchhHHHHHHHcCccccc---ccceeeecCCeEEEEecC
Q 006864 162 VGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRS---KYVGVSLVGKTLAVMGFG 238 (628)
Q Consensus 162 ~G~D~iDl~aa~~~GI~V~n~p~~~~~avAE~~l~l~L~~~R~i~~~~~~~~~g~W~~~---~~~g~~l~GktiGIIGlG 238 (628)
+||||||+++|+++||.|+|+||+|+.+||||++++||+++|+++++++.+|+|+|.+. .+.|.+++|||+||||+|
T Consensus 103 ~G~D~id~~~a~~~gI~V~n~pg~~~~~vAE~a~~l~L~~~R~~~~~~~~~r~g~W~~~~~~~~~g~~l~gktvGIIGlG 182 (345)
T 4g2n_A 103 VGYDHIDMAAARSLGIKVLHTPDVLSDACAEIAMLLVLNACRRGYEADRMVRSGSWPGWGPTQLLGMGLTGRRLGIFGMG 182 (345)
T ss_dssp SCCTTBCHHHHHHTTCEEECCCSCCHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCCCCTTTTCBCCCTTCEEEEESCS
T ss_pred CcccccCHHHHHhCCEEEEECCcccchHHHHHHHHHHHHHHhCHHHHHHHHHcCCCcccCcccccccccCCCEEEEEEeC
Confidence 99999999999999999999999999999999999999999999999999999999853 346899999999999999
Q ss_pred hhHHHHHHHHHcCCCEEEEECCCCChhHHHHcCCccc-CHHHHhccCCEEEEcCCCCccccccccHHHHhcCCCCcEEEE
Q 006864 239 KVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELV-SFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVN 317 (628)
Q Consensus 239 ~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~-sl~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN 317 (628)
+||+.+|++|++|||+|++|||+...... ..++..+ ++++++++||+|++|+|++++|+++|+++.|++||+|++|||
T Consensus 183 ~IG~~vA~~l~~~G~~V~~~dr~~~~~~~-~~g~~~~~~l~ell~~sDvV~l~~Plt~~T~~li~~~~l~~mk~gailIN 261 (345)
T 4g2n_A 183 RIGRAIATRARGFGLAIHYHNRTRLSHAL-EEGAIYHDTLDSLLGASDIFLIAAPGRPELKGFLDHDRIAKIPEGAVVIN 261 (345)
T ss_dssp HHHHHHHHHHHTTTCEEEEECSSCCCHHH-HTTCEECSSHHHHHHTCSEEEECSCCCGGGTTCBCHHHHHHSCTTEEEEE
T ss_pred hhHHHHHHHHHHCCCEEEEECCCCcchhh-hcCCeEeCCHHHHHhhCCEEEEecCCCHHHHHHhCHHHHhhCCCCcEEEE
Confidence 99999999999999999999998632222 2277776 999999999999999999999999999999999999999999
Q ss_pred cCCCchhcHHHHHHHHhCCCeeEEEeeccCCCCCCCCCccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCC
Q 006864 318 VARGGVIDEEALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKEAQEGVAIEIAEAVVGALRGELS 397 (628)
Q Consensus 318 ~aRg~~vde~aL~~aL~~g~i~ga~lDV~~~EP~~~~~~L~~~~nvilTPHig~~T~ea~~~~~~~~~~~i~~~l~g~~~ 397 (628)
++||+++|++||+++|++|+|+||+||||+.|| +.++|||++|||++|||+|++|.|++++++..+++||.+|++|+++
T Consensus 262 ~aRG~~vde~aL~~aL~~g~i~gA~LDVf~~EP-~~~~pL~~~~nvilTPHia~~t~e~~~~~~~~~~~ni~~~l~g~~~ 340 (345)
T 4g2n_A 262 ISRGDLINDDALIEALRSKHLFAAGLDVFANEP-AIDPRYRSLDNIFLTPHIGSATHETRDAMGWLLIQGIEALNQSDVP 340 (345)
T ss_dssp CSCGGGBCHHHHHHHHHHTSEEEEEESCCTTTT-SCCTTGGGCTTEEECCSCTTCBHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred CCCCchhCHHHHHHHHHhCCceEEEecCCCCCC-CCCchHHhCCCEEEcCccCcCCHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 999999999999999999999999999999999 6899999999999999999999999999999999999999999999
Q ss_pred CCccc
Q 006864 398 ATAIN 402 (628)
Q Consensus 398 ~~~vn 402 (628)
.|.|+
T Consensus 341 ~~~V~ 345 (345)
T 4g2n_A 341 DNLIS 345 (345)
T ss_dssp TTBCC
T ss_pred CCCcC
Confidence 88874
|
| >4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-68 Score=565.71 Aligned_cols=314 Identities=29% Similarity=0.469 Sum_probs=297.0
Q ss_pred CCeEEEeCCCCHhHHHHhhcCCcEEEec---CCCHhHHHhhcCCCeEEEEcCCCCCCHHHHHhcCCcceeEEecccccCc
Q 006864 90 KPTILVSEKLGEAGLAILRSFGNVECLY---DLSPEALCEKISQCDALIVRSGTKVTRSVFEAANGKLKVVGRAGVGIDN 166 (628)
Q Consensus 90 ~~~vlv~~~l~~~~~~~l~~~~~v~~~~---~~~~~el~~~~~~~d~liv~~~~~v~~~~l~~~~~~Lk~I~~~g~G~D~ 166 (628)
|||||++++++++.++.|++.+++.+.. .++.+++.+.++++|++++++.+++++++++++ |+||+|+++|+||||
T Consensus 2 ~~kvlv~~~~~~~~~~~l~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~i~~~~l~~~-~~Lk~I~~~~~G~d~ 80 (330)
T 4e5n_A 2 LPKLVITHRVHEEILQLLAPHCELITNQTDSTLTREEILRRCRDAQAMMAFMPDRVDADFLQAC-PELRVIGCALKGFDN 80 (330)
T ss_dssp CCEEEECSCCCHHHHHHHTTTCEEECCCSSSCCCHHHHHHHHTTCSEEEECTTCCBCHHHHHHC-TTCCEEEESSSCCTT
T ss_pred CCEEEEecCCCHHHHHHHHhCCeEEEecCCCCCCHHHHHHHhCCCeEEEEeCCCCCCHHHHhhC-CCCcEEEECCCcccc
Confidence 6899999999999999999988776542 357899999999999999987789999999998 599999999999999
Q ss_pred ccHhHHHhcCceEEcCCCCChhhHHHHHHHHHHHHHHchhHHHHHHHcCccccc--ccceeeecCCeEEEEecChhHHHH
Q 006864 167 VDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRS--KYVGVSLVGKTLAVMGFGKVGSEV 244 (628)
Q Consensus 167 iDl~aa~~~GI~V~n~p~~~~~avAE~~l~l~L~~~R~i~~~~~~~~~g~W~~~--~~~g~~l~GktiGIIGlG~IG~~v 244 (628)
||+++|+++||.|+|+||+|+.+||||++++||+++|+++++++.+++|+|... .+.|.+++|||+||||+|+||+.+
T Consensus 81 id~~~~~~~gI~v~n~~~~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~l~g~tvGIIG~G~IG~~v 160 (330)
T 4e5n_A 81 FDVDACTARGVWLTFVPDLLTVPTAELAIGLAVGLGRHLRAADAFVRSGKFRGWQPRFYGTGLDNATVGFLGMGAIGLAM 160 (330)
T ss_dssp BCHHHHHHTTCEEECCSSTTHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCSCCSCCCCCCSTTCEEEEECCSHHHHHH
T ss_pred cCHHHHHhcCcEEEeCCCCCchHHHHHHHHHHHHHHhChHHHHHHHHhCCccccCccccCCccCCCEEEEEeeCHHHHHH
Confidence 999999999999999999999999999999999999999999999999999732 346889999999999999999999
Q ss_pred HHHHHcCCCEEEEECCCC-ChhHHHHcCCcccCHHHHhccCCEEEEcCCCCccccccccHHHHhcCCCCcEEEEcCCCch
Q 006864 245 ARRAKGLGMNVIAHDPYA-PADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGV 323 (628)
Q Consensus 245 A~~l~~~G~~V~~~d~~~-~~~~a~~~g~~~~sl~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~~ 323 (628)
|++|++|||+|++||++. ..+.+...|+...++++++++||+|++|+|++++|+++++++.|++||+|++|||++||++
T Consensus 161 A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~arg~~ 240 (330)
T 4e5n_A 161 ADRLQGWGATLQYHEAKALDTQTEQRLGLRQVACSELFASSDFILLALPLNADTLHLVNAELLALVRPGALLVNPCRGSV 240 (330)
T ss_dssp HHHTTTSCCEEEEECSSCCCHHHHHHHTEEECCHHHHHHHCSEEEECCCCSTTTTTCBCHHHHTTSCTTEEEEECSCGGG
T ss_pred HHHHHHCCCEEEEECCCCCcHhHHHhcCceeCCHHHHHhhCCEEEEcCCCCHHHHHHhCHHHHhhCCCCcEEEECCCCch
Confidence 999999999999999987 5566667788888999999999999999999999999999999999999999999999999
Q ss_pred hcHHHHHHHHhCCCeeEEEeeccCCC-------CCCCCCccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCC
Q 006864 324 IDEEALVRALDSGVVAQAALDVFTEE-------PPAKDSKLVQHENVTVTPHLGASTKEAQEGVAIEIAEAVVGALRGEL 396 (628)
Q Consensus 324 vde~aL~~aL~~g~i~ga~lDV~~~E-------P~~~~~~L~~~~nvilTPHig~~T~ea~~~~~~~~~~~i~~~l~g~~ 396 (628)
+|+++|+++|++|+|+||+||||+.| |++.++|||++|||++|||+|++|.|++++++..+++||.+|++|+.
T Consensus 241 vd~~aL~~aL~~g~i~gA~lDV~~~E~~~~~~~Pl~~~~~L~~~~nvilTPHia~~t~e~~~~~~~~~~~ni~~~~~g~~ 320 (330)
T 4e5n_A 241 VDEAAVLAALERGQLGGYAADVFEMEDWARADRPQQIDPALLAHPNTLFTPHIGSAVRAVRLEIERCAAQNILQALAGER 320 (330)
T ss_dssp BCHHHHHHHHHHTSEEEEEESCCGGGCTTCTTCCSSCCHHHHTCSSEEECSSCTTCCHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred hCHHHHHHHHHhCCccEEEecccccccccccCCCCCCCchHHcCCCEEECCcCCCChHHHHHHHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999 98889999999999999999999999999999999999999999999
Q ss_pred CCCcccCC
Q 006864 397 SATAINAP 404 (628)
Q Consensus 397 ~~~~vn~p 404 (628)
+.+.||.|
T Consensus 321 ~~~~vn~~ 328 (330)
T 4e5n_A 321 PINAVNRL 328 (330)
T ss_dssp CTTBSSCC
T ss_pred CCCccCCC
Confidence 99999976
|
| >4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-68 Score=562.57 Aligned_cols=315 Identities=27% Similarity=0.402 Sum_probs=256.0
Q ss_pred ccccccCCCCeEEEeCCCCHhHHHHhhcCCcEEEecC-CCHhHHHhhcCCCeEEEEcCCCCCCHHHHHhcCCcceeEEec
Q 006864 82 LNVQAVTPKPTILVSEKLGEAGLAILRSFGNVECLYD-LSPEALCEKISQCDALIVRSGTKVTRSVFEAANGKLKVVGRA 160 (628)
Q Consensus 82 ~~~~~~~~~~~vlv~~~l~~~~~~~l~~~~~v~~~~~-~~~~el~~~~~~~d~liv~~~~~v~~~~l~~~~~~Lk~I~~~ 160 (628)
+.+...|.||+||++++++++.++.|++.+++...+. .+++++.+.++++|++++++.+++++++++++ |+||+|+++
T Consensus 22 ~~~~~~~~~~~vl~~~~~~~~~~~~L~~~~~v~~~~~~~~~~~~~~~~~~~d~li~~~~~~i~~~~l~~~-p~Lk~I~~~ 100 (340)
T 4dgs_A 22 SMLEFRNVKPDLLLVEPMMPFVMDELQRNYSVHRLYQAADRPALEAALPSIRAVATGGGAGLSNEWMEKL-PSLGIIAIN 100 (340)
T ss_dssp -----------CEECSCCCHHHHHTHHHHSCCEETTCGGGHHHHHHHGGGCCEEEEETTTCBCHHHHHHC-SSCCEEEEE
T ss_pred hhhccCCCCCEEEEECCCCHHHHHHHhcCCcEEEeCCCCCHHHHHHHhCCcEEEEEcCCCCCCHHHHhhC-CCCEEEEEC
Confidence 3344556799999999999999999988777765432 46778888889999999998889999999998 599999999
Q ss_pred ccccCcccHhHHHhcCceEEcCCCCChhhHHHHHHHHHHHHHHchhHHHHHHHcCccccc-c-cceeeecCCeEEEEecC
Q 006864 161 GVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRS-K-YVGVSLVGKTLAVMGFG 238 (628)
Q Consensus 161 g~G~D~iDl~aa~~~GI~V~n~p~~~~~avAE~~l~l~L~~~R~i~~~~~~~~~g~W~~~-~-~~g~~l~GktiGIIGlG 238 (628)
|+||||||+++|+++||.|+|+||+++.+||||++++||+++|+++++++.+|+|+|.+. . ..|.+++|||+||||+|
T Consensus 101 g~G~d~id~~~a~~~gI~V~n~pg~~~~~vAE~a~~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~l~gktiGIIGlG 180 (340)
T 4dgs_A 101 GVGTDKVDLARARRRNIDVTTTPGVLADDVADLGIALMLAVLRRVGDGDRLVREGRWAAGEQLPLGHSPKGKRIGVLGLG 180 (340)
T ss_dssp SSCCTTBCHHHHHHTTCEEECCCSSSHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCC------CCCCCCTTCEEEEECCS
T ss_pred CCCccccCHHHHHhCCEEEEECCCCCcchHHHHHHHHHHHHHhChHHHHHHHhcCCcccccCcCccccccCCEEEEECCC
Confidence 999999999999999999999999999999999999999999999999999999999874 2 25789999999999999
Q ss_pred hhHHHHHHHHHcCCCEEEEECCCCChhHHHHcCCc-ccCHHHHhccCCEEEEcCCCCccccccccHHHHhcCCCCcEEEE
Q 006864 239 KVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVE-LVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVN 317 (628)
Q Consensus 239 ~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~-~~sl~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN 317 (628)
+||+.+|++|++|||+|++||++... ..++. ..++++++++||+|++|+|++++|+++++++.|+.||+|++|||
T Consensus 181 ~IG~~vA~~l~~~G~~V~~~dr~~~~----~~~~~~~~sl~ell~~aDvVil~vP~t~~t~~li~~~~l~~mk~gailIN 256 (340)
T 4dgs_A 181 QIGRALASRAEAFGMSVRYWNRSTLS----GVDWIAHQSPVDLARDSDVLAVCVAASAATQNIVDASLLQALGPEGIVVN 256 (340)
T ss_dssp HHHHHHHHHHHTTTCEEEEECSSCCT----TSCCEECSSHHHHHHTCSEEEECC----------CHHHHHHTTTTCEEEE
T ss_pred HHHHHHHHHHHHCCCEEEEEcCCccc----ccCceecCCHHHHHhcCCEEEEeCCCCHHHHHHhhHHHHhcCCCCCEEEE
Confidence 99999999999999999999998643 12333 34899999999999999999999999999999999999999999
Q ss_pred cCCCchhcHHHHHHHHhCCCeeEEEeeccCCCCCCCCCccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCC
Q 006864 318 VARGGVIDEEALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKEAQEGVAIEIAEAVVGALRGELS 397 (628)
Q Consensus 318 ~aRg~~vde~aL~~aL~~g~i~ga~lDV~~~EP~~~~~~L~~~~nvilTPHig~~T~ea~~~~~~~~~~~i~~~l~g~~~ 397 (628)
++||+++|+++|+++|++|+|+||+||||++||++. +|||++|||++|||+|++|.|++++++..+++||.+|++|+++
T Consensus 257 ~aRG~vvde~aL~~aL~~g~i~gA~LDVf~~EP~~~-~~L~~~~nvilTPHia~~t~e~~~~~~~~~~~nl~~~~~g~~~ 335 (340)
T 4dgs_A 257 VARGNVVDEDALIEALKSGTIAGAGLDVFVNEPAIR-SEFHTTPNTVLMPHQGSATVETRMAMGKLVLANLAAHFAGEKA 335 (340)
T ss_dssp CSCC--------------CCSSEEEESCCSSSSSCC-SHHHHSSSEEECSSCSSCCHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred CCCCcccCHHHHHHHHHcCCceEEEeCCcCCCCCCc-cchhhCCCEEEcCcCCcCCHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 999999999999999999999999999999999864 6999999999999999999999999999999999999999999
Q ss_pred CCccc
Q 006864 398 ATAIN 402 (628)
Q Consensus 398 ~~~vn 402 (628)
.+.||
T Consensus 336 ~~~Vn 340 (340)
T 4dgs_A 336 PNTVN 340 (340)
T ss_dssp TTBC-
T ss_pred CCCcC
Confidence 99987
|
| >3kb6_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; HET: MSE NAD 1PE; 2.12A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-67 Score=559.55 Aligned_cols=275 Identities=29% Similarity=0.451 Sum_probs=258.1
Q ss_pred hcCCCeEEEEcCCCCCCHHHHHhcCCcceeEEecccccCcccHhHHHhcCceEEcCCCCChhhHHHHHHHHHHHHHHchh
Q 006864 127 KISQCDALIVRSGTKVTRSVFEAANGKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVS 206 (628)
Q Consensus 127 ~~~~~d~liv~~~~~v~~~~l~~~~~~Lk~I~~~g~G~D~iDl~aa~~~GI~V~n~p~~~~~avAE~~l~l~L~~~R~i~ 206 (628)
.++++|++++++.+++++++|+++ |+||+|+++|+||||||+++|+++||.|+|+||+++.+||||++++||++.|++.
T Consensus 39 ~l~~ad~i~v~~~~~i~~~~l~~~-p~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~p~~~~~~vAE~~~~l~L~~~r~~~ 117 (334)
T 3kb6_A 39 ELKKAELISVFVYDKLTEELLSKM-PRLKLIHTRSVGFDHIDLDYCKKKGILVTHIPAYSPESVAEHTFAMILTLVKRLK 117 (334)
T ss_dssp HHHHCSEEEECTTSCBCHHHHHTC-TTCCEEEESSSCCTTBCHHHHHHHTCEEECCTTSCHHHHHHHHHHHHHHHHTTHH
T ss_pred HhcCCCEEEEeCCCCCCHHHHhcC-CCCcEEEECCcccchhcHHHHHHCCCEEEECCCcCcHHHHHHHHHHHHHHhhccc
Confidence 457899999999899999999998 5999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCccccc-ccceeeecCCeEEEEecChhHHHHHHHHHcCCCEEEEECCCCChhHHHHcCCcccCHHHHhccCC
Q 006864 207 QADASIKAGKWLRS-KYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATAD 285 (628)
Q Consensus 207 ~~~~~~~~g~W~~~-~~~g~~l~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~sl~ell~~aD 285 (628)
++++.+++|.|.+. ...|.+++|||+||||+|+||+.+|+++++|||+|++|||+... ...+.++.++++++++++||
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~l~g~tvGIiG~G~IG~~va~~~~~fg~~v~~~d~~~~~-~~~~~~~~~~~l~ell~~sD 196 (334)
T 3kb6_A 118 RIEDRVKKLNFSQDSEILARELNRLTLGVIGTGRIGSRVAMYGLAFGMKVLCYDVVKRE-DLKEKGCVYTSLDELLKESD 196 (334)
T ss_dssp HHHHHHHTTCCCCCGGGCBCCGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCH-HHHHTTCEECCHHHHHHHCS
T ss_pred cccccccccccccccccccceecCcEEEEECcchHHHHHHHhhcccCceeeecCCccch-hhhhcCceecCHHHHHhhCC
Confidence 99999999998754 45689999999999999999999999999999999999998644 34566788889999999999
Q ss_pred EEEEcCCCCccccccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhCCCeeEEEeeccCCCCCCCCC----------
Q 006864 286 FISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEEPPAKDS---------- 355 (628)
Q Consensus 286 vV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~ga~lDV~~~EP~~~~~---------- 355 (628)
+|++|||+|++|++|||++.|++||+|++|||+|||++|||+||++||++|+|+||+||||++||++.++
T Consensus 197 ivslh~Plt~~T~~li~~~~l~~mk~~a~lIN~aRG~iVde~aL~~aL~~g~i~gA~LDV~~~EPl~~~~~~~~~~~~~~ 276 (334)
T 3kb6_A 197 VISLHVPYTKETHHMINEERISLMKDGVYLINTARGKVVDTDALYRAYQRGKFSGLGLDVFEDEEILILKKYTEGKATDK 276 (334)
T ss_dssp EEEECCCCCTTTTTCBCHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHTTCEEEEEESCCTTHHHHHTTGGGGTCCCHH
T ss_pred EEEEcCCCChhhccCcCHHHHhhcCCCeEEEecCccccccHHHHHHHHHhCCceEEEEeCCCCCCCcccccccccccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999986555
Q ss_pred -----ccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCcccC
Q 006864 356 -----KLVQHENVTVTPHLGASTKEAQEGVAIEIAEAVVGALRGELSATAINA 403 (628)
Q Consensus 356 -----~L~~~~nvilTPHig~~T~ea~~~~~~~~~~~i~~~l~g~~~~~~vn~ 403 (628)
|||.+|||++|||+|++|.|++++++..+++||.+|++|+++...+|.
T Consensus 277 ~~~~~~L~~~~nvilTPHia~~T~ea~~~~~~~~~~ni~~~l~Ge~~~~~~n~ 329 (334)
T 3kb6_A 277 NLKILELACKDNVIITPHIAYYTDKSLERIREETVKVVKAFVKGDLEQIKGNF 329 (334)
T ss_dssp HHHHHHHHTSTTEEECCSCTTCBHHHHHHHHHHHHHHHHHHHHTCGGGGGGGE
T ss_pred cccchhhccCCCEEECCchhhChHHHHHHHHHHHHHHHHHHHcCCCCcCCCCc
Confidence 688999999999999999999999999999999999999987666664
|
| >3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-65 Score=546.01 Aligned_cols=315 Identities=30% Similarity=0.473 Sum_probs=285.9
Q ss_pred CeEEEeCCCCHh-----HHHHhhcCCcEEEecC--CCHhHHHhhcCCCeEEEE-cCCCCCCHHHHHhcCCcceeEEeccc
Q 006864 91 PTILVSEKLGEA-----GLAILRSFGNVECLYD--LSPEALCEKISQCDALIV-RSGTKVTRSVFEAANGKLKVVGRAGV 162 (628)
Q Consensus 91 ~~vlv~~~l~~~-----~~~~l~~~~~v~~~~~--~~~~el~~~~~~~d~liv-~~~~~v~~~~l~~~~~~Lk~I~~~g~ 162 (628)
+||++++..... .++.|+. .++++... .+++++.+.++++|++++ ++.+++++++++++ |+||+|++.|+
T Consensus 3 mki~~~d~~~~~~~~~~~~~~l~~-~~v~~~~~~~~~~~~l~~~~~~ad~li~~~~~~~~~~~~l~~~-~~Lk~I~~~g~ 80 (352)
T 3gg9_A 3 LKIAVLDDYQDAVRKLDCFSLLQD-HEVKVFNNTVKGVGQLAARVADVEALVLIRERTRVTRQLLDRL-PKLKIISQTGR 80 (352)
T ss_dssp CEEEECCCTTCCGGGSGGGGGGTT-SEEEECCSCCCSHHHHHHHTTTCSEEEECTTSSCBCHHHHTTC-TTCCEEEESSC
T ss_pred eEEEEEcCccccchhhhhhhhhcC-ceEEEecCCCCCHHHHHHHhcCCeEEEEeCCCCCCCHHHHhhC-CCCeEEEEeCc
Confidence 689999877543 2344543 56665443 367889999999999998 66689999999998 59999999999
Q ss_pred cc----CcccHhHHHhcCceEEcCCCCChhhHHHHHHHHHHHHHHchhHHHHHHHcCcccccc----------cceeeec
Q 006864 163 GI----DNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSK----------YVGVSLV 228 (628)
Q Consensus 163 G~----D~iDl~aa~~~GI~V~n~p~~~~~avAE~~l~l~L~~~R~i~~~~~~~~~g~W~~~~----------~~g~~l~ 228 (628)
|+ ||||+++|+++||.|+|+||+ +.+||||++++||+++|+++.+++.+++|+|.+.. ..|.+++
T Consensus 81 G~~~~~d~id~~~a~~~gI~V~n~pg~-~~~vAE~al~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~~~~~~~~~l~ 159 (352)
T 3gg9_A 81 VSRDAGGHIDLEACTDKGVVVLEGKGS-PVAPAELTWALVMAAQRRIPQYVASLKHGAWQQSGLKSTTMPPNFGIGRVLK 159 (352)
T ss_dssp CCCSSSCSBCHHHHHHHTCEEECCCCC-SHHHHHHHHHHHHHHHTTHHHHHHHHHTTCTTCCCCCCTTSCTTTTSBCCCT
T ss_pred ccCCccCcccHHHHHhCCeEEEECCCC-cHHHHHHHHHHHHHHHhhHHHHHHHHHcCCCCcccccccccccccccCccCC
Confidence 99 999999999999999999999 99999999999999999999999999999998742 3588999
Q ss_pred CCeEEEEecChhHHHHHHHHHcCCCEEEEECCCCChhHHHHcCCccc-CHHHHhccCCEEEEcCCCCccccccccHHHHh
Q 006864 229 GKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELV-SFDQALATADFISLHMPLNPTTSKIFNDETFA 307 (628)
Q Consensus 229 GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~-sl~ell~~aDvV~l~~Plt~~t~~li~~~~l~ 307 (628)
|||+||||+|.||+.+|++|++|||+|++||++...+.+.+.|++.+ ++++++++||+|++|+|++++|+++++++.|+
T Consensus 160 g~tvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~g~~~~~~l~ell~~aDiV~l~~Plt~~t~~li~~~~l~ 239 (352)
T 3gg9_A 160 GQTLGIFGYGKIGQLVAGYGRAFGMNVLVWGRENSKERARADGFAVAESKDALFEQSDVLSVHLRLNDETRSIITVADLT 239 (352)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSHHHHHHHHHTTCEECSSHHHHHHHCSEEEECCCCSTTTTTCBCHHHHT
T ss_pred CCEEEEEeECHHHHHHHHHHHhCCCEEEEECCCCCHHHHHhcCceEeCCHHHHHhhCCEEEEeccCcHHHHHhhCHHHHh
Confidence 99999999999999999999999999999999864455667788877 99999999999999999999999999999999
Q ss_pred cCCCCcEEEEcCCCchhcHHHHHHHHhCCCeeEEEeeccCCCCCCCCCccccCCcEEEcCCCCCCcHHHHHHHHHHHHHH
Q 006864 308 KMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKEAQEGVAIEIAEA 387 (628)
Q Consensus 308 ~mk~gailIN~aRg~~vde~aL~~aL~~g~i~ga~lDV~~~EP~~~~~~L~~~~nvilTPHig~~T~ea~~~~~~~~~~~ 387 (628)
+||+|++|||++||+++|++||+++|++|+|+||+||||+.||++.++|||++|||++|||+|++|.|+++++...+++|
T Consensus 240 ~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gA~lDV~~~EPl~~~~pL~~~~nvilTPHia~~t~e~~~~~~~~~~~n 319 (352)
T 3gg9_A 240 RMKPTALFVNTSRAELVEENGMVTALNRGRPGMAAIDVFETEPILQGHTLLRMENCICTPHIGYVERESYEMYFGIAFQN 319 (352)
T ss_dssp TSCTTCEEEECSCGGGBCTTHHHHHHHHTSSSEEEECCCSSSCCCSCCGGGGCTTEEECCSCTTCBHHHHHHHHHHHHHH
T ss_pred hCCCCcEEEECCCchhhcHHHHHHHHHhCCccEEEecccCCCCCCCCChhhcCCCEEECCCCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCCCcccCCCCCcc
Q 006864 388 VVGALRGELSATAINAPMVPSE 409 (628)
Q Consensus 388 i~~~l~g~~~~~~vn~p~~~~~ 409 (628)
|.+|++|++ .|.||...+.+.
T Consensus 320 i~~~~~G~p-~~~Vn~~~~~~~ 340 (352)
T 3gg9_A 320 ILDILQGNV-DSVANPTALAPA 340 (352)
T ss_dssp HHHHHTTCC-TTBSCGGGSSCT
T ss_pred HHHHHcCCC-CcccCHHHHHHH
Confidence 999999975 699997655443
|
| >2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-65 Score=538.76 Aligned_cols=310 Identities=48% Similarity=0.736 Sum_probs=283.0
Q ss_pred CCCCeEEEeCCCCHhHHHHhhcC-CcEEEecCCCHhHHHhhcCCCeEEEEcCCCCCCHHHHHhcCCcceeEEecccccCc
Q 006864 88 TPKPTILVSEKLGEAGLAILRSF-GNVECLYDLSPEALCEKISQCDALIVRSGTKVTRSVFEAANGKLKVVGRAGVGIDN 166 (628)
Q Consensus 88 ~~~~~vlv~~~l~~~~~~~l~~~-~~v~~~~~~~~~el~~~~~~~d~liv~~~~~v~~~~l~~~~~~Lk~I~~~g~G~D~ 166 (628)
+.+++||+++.+.+...+.|++. .++......+.+++.+.++++|++++++.+++++++++++ |+||||+++|+||||
T Consensus 24 ~~~~~vli~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~~~~~~d~li~~~~~~~~~~~l~~~-~~Lk~I~~~~~G~d~ 102 (335)
T 2g76_A 24 ANLRKVLISDSLDPCCRKILQDGGLQVVEKQNLSKEELIAELQDCEGLIVRSATKVTADVINAA-EKLQVVGRAGTGVDN 102 (335)
T ss_dssp --CCEEEECSCCCHHHHHHHHHHTCEEEECCSCCHHHHHHHGGGCSEEEECSSSCBCHHHHHHC-SSCCEEEESSSSCTT
T ss_pred ccceEEEEcCCCCHHHHHHHHhCCCEEEECCCCCHHHHHHHhcCceEEEEcCCCCCCHHHHhhC-CCCcEEEECCCCcch
Confidence 44678999999999988888875 3665555568889999999999999988778999999998 599999999999999
Q ss_pred ccHhHHHhcCceEEcCCCCChhhHHHHHHHHHHHHHHchhHHHHHHHcCcccccccceeeecCCeEEEEecChhHHHHHH
Q 006864 167 VDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVAR 246 (628)
Q Consensus 167 iDl~aa~~~GI~V~n~p~~~~~avAE~~l~l~L~~~R~i~~~~~~~~~g~W~~~~~~g~~l~GktiGIIGlG~IG~~vA~ 246 (628)
||+++|+++||.|+|+|++|+.+||||++++||++.|+++++++.+++|.|.+..+.+.+++|||+||||+|+||+.+|+
T Consensus 103 id~~~~~~~gI~v~n~p~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~l~g~tvgIIGlG~IG~~vA~ 182 (335)
T 2g76_A 103 VDLEAATRKGILVMNTPNGNSLSAAELTCGMIMCLARQIPQATASMKDGKWERKKFMGTELNGKTLGILGLGRIGREVAT 182 (335)
T ss_dssp BCHHHHHHHTCEEECCSSTTHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCTGGGCBCCCTTCEEEEECCSHHHHHHHH
T ss_pred hChHHHHhCCeEEEECCCccchHHHHHHHHHHHHHHhchHHHHHHHHcCCCCccCCCCcCCCcCEEEEEeECHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999987556788999999999999999999999
Q ss_pred HHHcCCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEcCCCCccccccccHHHHhcCCCCcEEEEcCCCchhcH
Q 006864 247 RAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDE 326 (628)
Q Consensus 247 ~l~~~G~~V~~~d~~~~~~~a~~~g~~~~sl~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~~vde 326 (628)
+|++|||+|++||++.....+...|+...++++++++||+|++|+|++++|+++++++.|++||+|++|||++||+++|+
T Consensus 183 ~l~~~G~~V~~~d~~~~~~~~~~~g~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~arg~vvd~ 262 (335)
T 2g76_A 183 RMQSFGMKTIGYDPIISPEVSASFGVQQLPLEEIWPLCDFITVHTPLLPSTTGLLNDNTFAQCKKGVRVVNCARGGIVDE 262 (335)
T ss_dssp HHHTTTCEEEEECSSSCHHHHHHTTCEECCHHHHGGGCSEEEECCCCCTTTTTSBCHHHHTTSCTTEEEEECSCTTSBCH
T ss_pred HHHHCCCEEEEECCCcchhhhhhcCceeCCHHHHHhcCCEEEEecCCCHHHHHhhCHHHHhhCCCCcEEEECCCccccCH
Confidence 99999999999999876656667788778999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCeeEEEeeccCCCCCCCCCccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCC
Q 006864 327 EALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKEAQEGVAIEIAEAVVGALRGELSAT 399 (628)
Q Consensus 327 ~aL~~aL~~g~i~ga~lDV~~~EP~~~~~~L~~~~nvilTPHig~~T~ea~~~~~~~~~~~i~~~l~g~~~~~ 399 (628)
++|+++|++|+|+||+||||+.||+ +++|||++||+|+|||++++|.|++++++..+++|+.+|++|+++.|
T Consensus 263 ~aL~~aL~~g~i~gA~lDV~~~EP~-~~~~L~~~~nvilTPH~~~~t~e~~~~~~~~~~~nl~~~~~g~~~~n 334 (335)
T 2g76_A 263 GALLRALQSGQCAGAALDVFTEEPP-RDRALVDHENVISCPHLGASTKEAQSRCGEEIAVQFVDMVKGKSLTG 334 (335)
T ss_dssp HHHHHHHHHTSEEEEEESCCSSSSC-SCCHHHHSTTEEECSSCTTCBHHHHHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHhCCccEEEEeecCCCCC-CCchHHhCCCEEECCcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 9999999999999999999999994 68999999999999999999999999999999999999999987754
|
| >4hy3_A Phosphoglycerate oxidoreductase; PSI-biology, structural genomics, protein structure initiati acid transport and metabolism, NAD binding domain.; 2.80A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-65 Score=547.54 Aligned_cols=310 Identities=20% Similarity=0.290 Sum_probs=276.7
Q ss_pred CCeEEEeCCC--------CHhHHHHhhcCCcEEEecCCCHhHHHh-hcCCCeEEEEcCCCCCCHHHHHhcCCcceeEEec
Q 006864 90 KPTILVSEKL--------GEAGLAILRSFGNVECLYDLSPEALCE-KISQCDALIVRSGTKVTRSVFEAANGKLKVVGRA 160 (628)
Q Consensus 90 ~~~vlv~~~l--------~~~~~~~l~~~~~v~~~~~~~~~el~~-~~~~~d~liv~~~~~v~~~~l~~~~~~Lk~I~~~ 160 (628)
.+++++.++. .++.++.|++.+++......+.+|+.+ .+.++|+++. .+++++++++++ |+||+|++.
T Consensus 27 ~r~ivll~~~~~~~~~~~~~~~~~~L~~~~~v~~~~~~~~~e~~~~~~~~~~~i~~--~~~i~~~~l~~~-p~Lk~I~~~ 103 (365)
T 4hy3_A 27 ERPLAISAPEPRSLDLIFSDEARAALHSKYEIVEADPENIAGLGDDILGRARYIIG--QPPLSAETLARM-PALRSILNV 103 (365)
T ss_dssp -CCEEEEECTTSCHHHHCCHHHHHHHHHHSEEEECCGGGGGGSCTTHHHHEEEEEE--CCCCCHHHHTTC-TTCCEEECC
T ss_pred CCCEEEEcCCcccccccCCHHHHHHHhCCcEEEECCCCChHHHHHHhhCCeEEEEe--CCCCCHHHHhhC-CCCeEEEEe
Confidence 3345555554 566888898888876544445566554 4467888774 368999999998 599999975
Q ss_pred -ccccCcccHhHHHhcCceEEcCCCCChhhHHHHHHHHHHHHHHchhHHHHHHHcCcc--ccc-ccceeeecCCeEEEEe
Q 006864 161 -GVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKW--LRS-KYVGVSLVGKTLAVMG 236 (628)
Q Consensus 161 -g~G~D~iDl~aa~~~GI~V~n~p~~~~~avAE~~l~l~L~~~R~i~~~~~~~~~g~W--~~~-~~~g~~l~GktiGIIG 236 (628)
|+||||||+++|+++||.|+|+|++|+.+||||++++||+++|+++++++.+|+|+| .+. .+.+.+++|||+||||
T Consensus 104 ~~~G~d~iD~~~a~~~GI~V~n~~~~~~~~vAE~~l~l~L~~~R~~~~~~~~~r~g~~~w~~~~~~~~~~l~gktvGIIG 183 (365)
T 4hy3_A 104 ESNLLNNMPYEVLFQRGIHVVTTGQVFAEPVAEIGLGFALALARGIVDADIAFQEGTELWGGEGNASARLIAGSEIGIVG 183 (365)
T ss_dssp SSSCCSCSCTTHHHHSCCEEEECGGGGHHHHHHHHHHHHHHHHHTTTHHHHHHHHTCCCCSSSSTTSCCCSSSSEEEEEC
T ss_pred cccccCcccHHHHhcCCeEEEeCCCccchHHHHHHHHHHHHHHhchhHHHHHHHcCCccccccccccccccCCCEEEEec
Confidence 899999999999999999999999999999999999999999999999999999995 432 3468899999999999
Q ss_pred cChhHHHHHHHHHcCCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEcCCCCccccccccHHHHhcCCCCcEEE
Q 006864 237 FGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIV 316 (628)
Q Consensus 237 lG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~sl~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailI 316 (628)
+|+||+.+|+++++|||+|++|||+...+.+...|+...++++++++||+|++|+|++++|+++++++.|++||+|++||
T Consensus 184 lG~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~~g~~~~~l~ell~~aDvV~l~~Plt~~T~~li~~~~l~~mk~gailI 263 (365)
T 4hy3_A 184 FGDLGKALRRVLSGFRARIRVFDPWLPRSMLEENGVEPASLEDVLTKSDFIFVVAAVTSENKRFLGAEAFSSMRRGAAFI 263 (365)
T ss_dssp CSHHHHHHHHHHTTSCCEEEEECSSSCHHHHHHTTCEECCHHHHHHSCSEEEECSCSSCC---CCCHHHHHTSCTTCEEE
T ss_pred CCcccHHHHHhhhhCCCEEEEECCCCCHHHHhhcCeeeCCHHHHHhcCCEEEEcCcCCHHHHhhcCHHHHhcCCCCcEEE
Confidence 99999999999999999999999997666667788888899999999999999999999999999999999999999999
Q ss_pred EcCCCchhcHHHHHHHHhCCCeeEEEeeccCCCCCCCCCccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCC
Q 006864 317 NVARGGVIDEEALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKEAQEGVAIEIAEAVVGALRGEL 396 (628)
Q Consensus 317 N~aRg~~vde~aL~~aL~~g~i~ga~lDV~~~EP~~~~~~L~~~~nvilTPHig~~T~ea~~~~~~~~~~~i~~~l~g~~ 396 (628)
|++||+++|++||+++|++|+|+ |+||||+.||++.++|||++|||++|||+|++|.|++++++..+++||.+|++|++
T Consensus 264 N~aRG~~vde~aL~~aL~~g~i~-aaLDV~~~EPl~~~~pL~~~~nvilTPHia~~t~e~~~~~~~~~~~ni~~~~~G~~ 342 (365)
T 4hy3_A 264 LLSRADVVDFDALMAAVSSGHIV-AASDVYPEEPLPLDHPVRSLKGFIRSAHRAGALDSAFKKMGDMVLEDMDLMDRGLP 342 (365)
T ss_dssp ECSCGGGSCHHHHHHHHHTTSSE-EEESCCSSSSCCTTCGGGTCTTEEECCSCSSCCHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred ECcCCchhCHHHHHHHHHcCCce-EEeeCCCCCCCCCCChhhcCCCEEECCccccCHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999998 99999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccC
Q 006864 397 SATAINA 403 (628)
Q Consensus 397 ~~~~vn~ 403 (628)
+.++||.
T Consensus 343 ~~~~vn~ 349 (365)
T 4hy3_A 343 PMRCKRA 349 (365)
T ss_dssp CCSSEEC
T ss_pred ccccccc
Confidence 9999996
|
| >3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-66 Score=544.11 Aligned_cols=313 Identities=23% Similarity=0.275 Sum_probs=279.7
Q ss_pred cCCCCeEEEeCCCCHhHHHHh-hcC-CcEEEecCCCHhHHHhhcCCCeEEEEcCCCCCCHHHHHhcCCcceeEEeccccc
Q 006864 87 VTPKPTILVSEKLGEAGLAIL-RSF-GNVECLYDLSPEALCEKISQCDALIVRSGTKVTRSVFEAANGKLKVVGRAGVGI 164 (628)
Q Consensus 87 ~~~~~~vlv~~~l~~~~~~~l-~~~-~~v~~~~~~~~~el~~~~~~~d~liv~~~~~v~~~~l~~~~~~Lk~I~~~g~G~ 164 (628)
+++|+|||+++++.+...+.| ++. .++++....+.+++.+.++++|+++++. ++++++++++ |+||||++.|+||
T Consensus 2 ~~~~mkili~~~~~~~~~~~L~~~~~p~~~~~~~~~~~~~~~~~~~ad~li~~~--~~~~~~l~~~-~~Lk~I~~~~~G~ 78 (324)
T 3hg7_A 2 SLSQRTLLLLSQDNAHYERLLKAAHLPHLRILRADNQSDAEKLIGEAHILMAEP--ARAKPLLAKA-NKLSWFQSTYAGV 78 (324)
T ss_dssp --CCEEEEEESTTHHHHHHHHHHSCCTTEEEEECSSHHHHHHHGGGCSEEEECH--HHHGGGGGGC-TTCCEEEESSSCC
T ss_pred CccccEEEEecCCCHHHHHHHhhccCCCeEEEeCCChhHHHHHhCCCEEEEECC--CCCHHHHhhC-CCceEEEECCCCC
Confidence 456789999999999999999 654 4777766567888889999999999853 5667888887 5999999999999
Q ss_pred CcccHhHHHhcCceEEcCCCCChhhHHHHHHHHHHHHHHchhHHHHHHHcCcccccccceeeecCCeEEEEecChhHHHH
Q 006864 165 DNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEV 244 (628)
Q Consensus 165 D~iDl~aa~~~GI~V~n~p~~~~~avAE~~l~l~L~~~R~i~~~~~~~~~g~W~~~~~~g~~l~GktiGIIGlG~IG~~v 244 (628)
||||+++|.+ ||.|+|+||+++.+||||++++||+++|+++++++.+++|+|.+ ..+.+++|||+||||+|+||+++
T Consensus 79 d~id~~~~~~-gI~v~n~~g~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~--~~~~~l~g~tvGIIGlG~IG~~v 155 (324)
T 3hg7_A 79 DVLLDARCRR-DYQLTNVRGIFGPLMSEYVFGHLLSLMRQLPLYREQQKQRLWQS--HPYQGLKGRTLLILGTGSIGQHI 155 (324)
T ss_dssp GGGSCTTSCC-SSEEECCCSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCC--CCCCCSTTCEEEEECCSHHHHHH
T ss_pred CccChHHHhC-CEEEEECCCcChHHHHHHHHHHHHHHHhChHHHHHHHhhCCCcC--CCCcccccceEEEEEECHHHHHH
Confidence 9999998865 99999999999999999999999999999999999999999986 35789999999999999999999
Q ss_pred HHHHHcCCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEcCCCCccccccccHHHHhcCCCCcEEEEcCCCchh
Q 006864 245 ARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVI 324 (628)
Q Consensus 245 A~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~sl~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~~v 324 (628)
|++|++|||+|++||++..............++++++++||+|++|+|++++|+++++++.|++||+|++|||++||+++
T Consensus 156 A~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~gailIN~aRG~~v 235 (324)
T 3hg7_A 156 AHTGKHFGMKVLGVSRSGRERAGFDQVYQLPALNKMLAQADVIVSVLPATRETHHLFTASRFEHCKPGAILFNVGRGNAI 235 (324)
T ss_dssp HHHHHHTTCEEEEECSSCCCCTTCSEEECGGGHHHHHHTCSEEEECCCCCSSSTTSBCTTTTTCSCTTCEEEECSCGGGB
T ss_pred HHHHHhCCCEEEEEcCChHHhhhhhcccccCCHHHHHhhCCEEEEeCCCCHHHHHHhHHHHHhcCCCCcEEEECCCchhh
Confidence 99999999999999987632211111233468999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHhCCCeeEEEeeccCCCCCCCCCccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCcccCC
Q 006864 325 DEEALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKEAQEGVAIEIAEAVVGALRGELSATAINAP 404 (628)
Q Consensus 325 de~aL~~aL~~g~i~ga~lDV~~~EP~~~~~~L~~~~nvilTPHig~~T~ea~~~~~~~~~~~i~~~l~g~~~~~~vn~p 404 (628)
|++||+++|++|+|+||+||||++||++.++|||++|||++|||+|++|.+ .+++..+++|+.+|++|+++.|.||.+
T Consensus 236 de~aL~~aL~~g~i~ga~lDV~~~EPl~~~~pL~~~~nvilTPHia~~t~~--~~~~~~~~~nl~~~~~G~~~~~~V~~~ 313 (324)
T 3hg7_A 236 NEGDLLTALRTGKLGMAVLDVFEQEPLPADSPLWGQPNLIITPHNSAYSFP--DDVAQIFVRNYIRFIDGQPLDGKIDFD 313 (324)
T ss_dssp CHHHHHHHHHTTSSSEEEESCCSSSSCCTTCTTTTCTTEEECCSCSSCCCH--HHHHHHHHHHHHHHHTTCCCTTBCCCC
T ss_pred CHHHHHHHHHcCCceEEEeccCCCCCCCCCChhhcCCCEEEeCCCccccHH--HHHHHHHHHHHHHHHcCCCCcceEChh
Confidence 999999999999999999999999999999999999999999999999987 478899999999999999999999987
Q ss_pred CCC
Q 006864 405 MVP 407 (628)
Q Consensus 405 ~~~ 407 (628)
...
T Consensus 314 ~~~ 316 (324)
T 3hg7_A 314 KGY 316 (324)
T ss_dssp ---
T ss_pred hhc
Confidence 544
|
| >2yq5_A D-isomer specific 2-hydroxyacid dehydrogenase; oxidoreductase; HET: NAD; 2.75A {Lactobacillus delbrueckii subsp} PDB: 2yq4_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-65 Score=542.45 Aligned_cols=312 Identities=22% Similarity=0.329 Sum_probs=273.8
Q ss_pred CCeEEEeCCCC--HhHHHHh-hcC-CcEEEecCCCHhHHHhhcCCCeEEEEcCCCCCCHH-HHHhcC-CcceeEEecccc
Q 006864 90 KPTILVSEKLG--EAGLAIL-RSF-GNVECLYDLSPEALCEKISQCDALIVRSGTKVTRS-VFEAAN-GKLKVVGRAGVG 163 (628)
Q Consensus 90 ~~~vlv~~~l~--~~~~~~l-~~~-~~v~~~~~~~~~el~~~~~~~d~liv~~~~~v~~~-~l~~~~-~~Lk~I~~~g~G 163 (628)
|+||++.+..+ ...++.+ ++. .++.+......+|+.+.++++|++++++.++++++ +|++++ ++||+|+++|+|
T Consensus 1 Mmki~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~li~~~~~~~~~~~~l~~~~~~~Lk~I~~~~~G 80 (343)
T 2yq5_A 1 MTKIAMYNVSPIEVPYIEDWAKKNDVEIKTTDQALTSATVDLAEGCSSVSLKPLGPVDEEVVYQKLSEYGVKCIGLRIVG 80 (343)
T ss_dssp -CEEEEESCCGGGHHHHHHHHHHHTCEEEEESSCCSTTGGGGGTTCSEEEECCSSCBCCHHHHHHHHHTTCCEEEESSSC
T ss_pred CceEEEEecCcccHHHHHHHHHhCCeEEEECCCCCCHHHHHHhcCCcEEEEcCCCCcCHHHHHHhccccCceEEEECcee
Confidence 47899877322 2233333 333 35655544344678899999999999988899999 999874 369999999999
Q ss_pred cCcccHhHHHhcCceEEcCCCCChhhHHHHHHHHHHHHHHchhHHHHHHH-cCcccc-cccceeeecCCeEEEEecChhH
Q 006864 164 IDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIK-AGKWLR-SKYVGVSLVGKTLAVMGFGKVG 241 (628)
Q Consensus 164 ~D~iDl~aa~~~GI~V~n~p~~~~~avAE~~l~l~L~~~R~i~~~~~~~~-~g~W~~-~~~~g~~l~GktiGIIGlG~IG 241 (628)
|||||+++|+++||.|+|+|++++.+||||++++||+++|+++.+++.++ +|+|.+ ..+.+.+++|||+||||+|+||
T Consensus 81 ~d~id~~~~~~~gI~v~n~p~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~~g~~~w~~~~~~~~l~gktvgIiGlG~IG 160 (343)
T 2yq5_A 81 FNTINFDWTKKYNLLVTNVPVYSPRAIAEMTVTQAMYLLRKIGEFRYRMDHDHDFTWPSNLISNEIYNLTVGLIGVGHIG 160 (343)
T ss_dssp CTTBCSSTTCC--CEEECCSCSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHCCCCCCGGGCBCCGGGSEEEEECCSHHH
T ss_pred ecccchhHHHhCCEEEEECCCCCcHHHHHHHHHHHHHHHhchHHHHHHHHHcCCcccccCCCccccCCCeEEEEecCHHH
Confidence 99999999999999999999999999999999999999999999999999 998765 3467899999999999999999
Q ss_pred HHHHHHHHcCCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEcCCCCccccccccHHHHhcCCCCcEEEEcCCC
Q 006864 242 SEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARG 321 (628)
Q Consensus 242 ~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~sl~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg 321 (628)
+.+|++|++|||+|++||++.... .+.++..+++++++++||+|++|+|++++|+++++++.|++||+|++|||+|||
T Consensus 161 ~~vA~~l~~~G~~V~~~d~~~~~~--~~~~~~~~~l~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg 238 (343)
T 2yq5_A 161 SAVAEIFSAMGAKVIAYDVAYNPE--FEPFLTYTDFDTVLKEADIVSLHTPLFPSTENMIGEKQLKEMKKSAYLINCARG 238 (343)
T ss_dssp HHHHHHHHHTTCEEEEECSSCCGG--GTTTCEECCHHHHHHHCSEEEECCCCCTTTTTCBCHHHHHHSCTTCEEEECSCG
T ss_pred HHHHHHHhhCCCEEEEECCChhhh--hhccccccCHHHHHhcCCEEEEcCCCCHHHHHHhhHHHHhhCCCCcEEEECCCC
Confidence 999999999999999999987542 233466779999999999999999999999999999999999999999999999
Q ss_pred chhcHHHHHHHHhCCCeeEEEeeccCCCC--CCCC-----------CccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHH
Q 006864 322 GVIDEEALVRALDSGVVAQAALDVFTEEP--PAKD-----------SKLVQHENVTVTPHLGASTKEAQEGVAIEIAEAV 388 (628)
Q Consensus 322 ~~vde~aL~~aL~~g~i~ga~lDV~~~EP--~~~~-----------~~L~~~~nvilTPHig~~T~ea~~~~~~~~~~~i 388 (628)
+++|++||+++|++|+|+||+||||++|| ++.+ +|||++|||++|||+|++|.|++++++..+++||
T Consensus 239 ~~vd~~aL~~aL~~g~i~gA~LDV~~~EP~~~~~~~~~~~~l~~~~~pL~~~~nvilTPHia~~t~ea~~~~~~~~~~ni 318 (343)
T 2yq5_A 239 ELVDTGALIKALQDGEIAGAGLDTLAGESSYFGHTGLTDSEIPEDYKTLAKMPNVVITPHSAFYTETSIRNMVQICLTDQ 318 (343)
T ss_dssp GGBCHHHHHHHHHHTSSSCEEESCCTTGGGTTTCCSCCTTTSCHHHHHHTTCTTEEECSSCTTCBHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHcCCCcEEEecccccCCCccccccccccccccchhHHhcCCCEEECCccccchHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999 4455 4899999999999999999999999999999999
Q ss_pred HHHHcCCCCCCcccC
Q 006864 389 VGALRGELSATAINA 403 (628)
Q Consensus 389 ~~~l~g~~~~~~vn~ 403 (628)
.+|++|+.+.|.||.
T Consensus 319 ~~~l~g~~~~~~v~~ 333 (343)
T 2yq5_A 319 LTIAKGGRPRSIVNL 333 (343)
T ss_dssp HHHHTTCCCTTBC--
T ss_pred HHHHcCCCCCceECC
Confidence 999999999999985
|
| >3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-65 Score=544.44 Aligned_cols=314 Identities=30% Similarity=0.410 Sum_probs=285.9
Q ss_pred CCCCeEEEeCCCCHhHHHHhhcCC-cEEEecC--CCHhHHHhhcCCCeEEEEcCC--CCCCHHHHHhcCCcceeEEeccc
Q 006864 88 TPKPTILVSEKLGEAGLAILRSFG-NVECLYD--LSPEALCEKISQCDALIVRSG--TKVTRSVFEAANGKLKVVGRAGV 162 (628)
Q Consensus 88 ~~~~~vlv~~~l~~~~~~~l~~~~-~v~~~~~--~~~~el~~~~~~~d~liv~~~--~~v~~~~l~~~~~~Lk~I~~~g~ 162 (628)
+.+|++|-.+.......++|++.+ ++.+... .+.+++.+.++++|++|+++. .++++++++++ |+||+|+++|+
T Consensus 17 ~~~~~~lg~~~~~l~~~~~L~~~g~ev~~~~~~~~~~~~~~~~~~~ad~li~~~~~~~~~~~~~l~~~-p~Lk~i~~~g~ 95 (351)
T 3jtm_A 17 TKNPNFLGCVENALGIRDWLESQGHQYIVTDDKEGPDCELEKHIPDLHVLISTPFHPAYVTAERIKKA-KNLKLLLTAGI 95 (351)
T ss_dssp HHCTTCCSSTTTGGGCHHHHHHTTCEEEEESCCSSTTSHHHHHTTTCSEEEECTTSCCCBCHHHHHHC-SSCCEEEESSS
T ss_pred ccCCCEEEeccchHHHHHHHHHCCCEEEEeCCCCCCHHHHHHHhCCCEEEEEccCCCCCCCHHHHhhC-CCCeEEEEeCe
Confidence 346778877776667788888774 6665432 256789999999999998753 46999999998 59999999999
Q ss_pred ccCcccHhHHHhcCceEEcCCCCChhhHHHHHHHHHHHHHHchhHHHHHHHcCcccccc--cceeeecCCeEEEEecChh
Q 006864 163 GIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSK--YVGVSLVGKTLAVMGFGKV 240 (628)
Q Consensus 163 G~D~iDl~aa~~~GI~V~n~p~~~~~avAE~~l~l~L~~~R~i~~~~~~~~~g~W~~~~--~~g~~l~GktiGIIGlG~I 240 (628)
|+||||+++|+++||.|+|+||+|+.+||||++++||+++|++.++++.+++|.|.+.. ..+.+|+|||+||||+|+|
T Consensus 96 G~d~id~~~a~~~gI~V~n~~g~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~l~gktvGIIG~G~I 175 (351)
T 3jtm_A 96 GSDHIDLQAAAAAGLTVAEVTGSNVVSVAEDELMRILILMRNFVPGYNQVVKGEWNVAGIAYRAYDLEGKTIGTVGAGRI 175 (351)
T ss_dssp CCTTBCHHHHHHTTCEEEECTTTTHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCHHHHHTTCCCSTTCEEEEECCSHH
T ss_pred eecccCHHHHHhcCeeEEECCCcCchHHHHHHHHHHHHHhhCcHHHHHHHHcCCCccccccCCcccccCCEEeEEEeCHH
Confidence 99999999999999999999999999999999999999999999999999999998642 3478999999999999999
Q ss_pred HHHHHHHHHcCCCEEEEECCCC-ChhHHHHcCCccc-CHHHHhccCCEEEEcCCCCccccccccHHHHhcCCCCcEEEEc
Q 006864 241 GSEVARRAKGLGMNVIAHDPYA-PADKARAVGVELV-SFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNV 318 (628)
Q Consensus 241 G~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~g~~~~-sl~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~ 318 (628)
|+.+|++|++|||+|++||++. +.+.+.+.|+..+ ++++++++||+|++|+|++++|+++|+++.|++||+|++|||+
T Consensus 176 G~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~ 255 (351)
T 3jtm_A 176 GKLLLQRLKPFGCNLLYHDRLQMAPELEKETGAKFVEDLNEMLPKCDVIVINMPLTEKTRGMFNKELIGKLKKGVLIVNN 255 (351)
T ss_dssp HHHHHHHHGGGCCEEEEECSSCCCHHHHHHHCCEECSCHHHHGGGCSEEEECSCCCTTTTTCBSHHHHHHSCTTEEEEEC
T ss_pred HHHHHHHHHHCCCEEEEeCCCccCHHHHHhCCCeEcCCHHHHHhcCCEEEECCCCCHHHHHhhcHHHHhcCCCCCEEEEC
Confidence 9999999999999999999885 5566677888776 8999999999999999999999999999999999999999999
Q ss_pred CCCchhcHHHHHHHHhCCCeeEEEeeccCCCCCCCCCccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCC--
Q 006864 319 ARGGVIDEEALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKEAQEGVAIEIAEAVVGALRGEL-- 396 (628)
Q Consensus 319 aRg~~vde~aL~~aL~~g~i~ga~lDV~~~EP~~~~~~L~~~~nvilTPHig~~T~ea~~~~~~~~~~~i~~~l~g~~-- 396 (628)
|||+++|++||+++|++|+|+||+||||+.||++.++|||++||+++|||+|+.|.|++.+++..+++|+.+|++|++
T Consensus 256 aRG~~vde~aL~~aL~~g~i~ga~lDV~~~EP~~~~~pL~~~~nvilTPHia~~t~ea~~~~~~~~~~nl~~~~~g~~~~ 335 (351)
T 3jtm_A 256 ARGAIMERQAVVDAVESGHIGGYSGDVWDPQPAPKDHPWRYMPNQAMTPHTSGTTIDAQLRYAAGTKDMLERYFKGEDFP 335 (351)
T ss_dssp SCGGGBCHHHHHHHHHHTSEEEEEESCCSSSSCCTTCGGGTSTTBCCCCSCGGGSHHHHHHHHHHHHHHHHHHHHTCCCC
T ss_pred cCchhhCHHHHHHHHHhCCccEEEeCCCCCCCCCCCChhhcCCCEEECCcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999995
Q ss_pred CCCccc
Q 006864 397 SATAIN 402 (628)
Q Consensus 397 ~~~~vn 402 (628)
+.|.|+
T Consensus 336 ~~~~i~ 341 (351)
T 3jtm_A 336 TENYIV 341 (351)
T ss_dssp GGGEEE
T ss_pred CceEEe
Confidence 555554
|
| >3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-65 Score=541.13 Aligned_cols=311 Identities=25% Similarity=0.347 Sum_probs=272.4
Q ss_pred CCeEEEeCCCCHhHHHHhhcCC-cEEEecCCCHhHHHhhcCCCeEEEEcCCCCCCHHHH-HhcCCcceeEEecccccCcc
Q 006864 90 KPTILVSEKLGEAGLAILRSFG-NVECLYDLSPEALCEKISQCDALIVRSGTKVTRSVF-EAANGKLKVVGRAGVGIDNV 167 (628)
Q Consensus 90 ~~~vlv~~~l~~~~~~~l~~~~-~v~~~~~~~~~el~~~~~~~d~liv~~~~~v~~~~l-~~~~~~Lk~I~~~g~G~D~i 167 (628)
|+|||++++++++.++.|++.+ ++++.... +...+.+.++|+++++. .++ ++++ +++ |+||||+++|+|||||
T Consensus 1 m~kil~~~~~~~~~~~~L~~~~~~~~~~~~~--~~~~~~~~~ad~l~~~~-~~~-~~~l~~~~-~~Lk~I~~~~~G~d~i 75 (324)
T 3evt_A 1 MSLVLMAQATKPEQLQQLQTTYPDWTFKDAA--AVTAADYDQIEVMYGNH-PLL-KTILARPT-NQLKFVQVISAGVDYL 75 (324)
T ss_dssp -CEEEECSCCCHHHHHHHHHHCTTCEEEETT--SCCTTTGGGEEEEESCC-THH-HHHHHSTT-CCCCEEECSSSCCTTS
T ss_pred CcEEEEecCCCHHHHHHHHhhCCCeEEecCC--ccChHHhCCcEEEEECC-cCh-HHHHHhhC-CCceEEEECCcccccc
Confidence 4689999999999999998754 44332211 11223567899988764 457 8999 566 5999999999999999
Q ss_pred cHhHHHhcCceEEcCCCCChhhHHHHHHHHHHHHHHchhHH-HHHHHcCcccccccceeeecCCeEEEEecChhHHHHHH
Q 006864 168 DLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQA-DASIKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVAR 246 (628)
Q Consensus 168 Dl~aa~~~GI~V~n~p~~~~~avAE~~l~l~L~~~R~i~~~-~~~~~~g~W~~~~~~g~~l~GktiGIIGlG~IG~~vA~ 246 (628)
|+++|+++||.|+|+||+++.+||||++++||+++|+++++ ++.+++|+|.+.. .+.+++|||+||||+|+||+.+|+
T Consensus 76 d~~~~~~~gI~v~n~~g~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~~~~W~~~~-~~~~l~gktvGIiGlG~IG~~vA~ 154 (324)
T 3evt_A 76 PLKALQAAGVVVANTSGIHADAISESVLAAMLSVVRGYHAAWLNQRGARQWALPM-TTSTLTGQQLLIYGTGQIGQSLAA 154 (324)
T ss_dssp CHHHHHHTTCEEECCTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTTCCSSCSS-CCCCSTTCEEEEECCSHHHHHHHH
T ss_pred CHHHHHHCCcEEEECCCcCchHHHHHHHHHHHHHHhChhHHHHHHHhcCCcccCC-CCccccCCeEEEECcCHHHHHHHH
Confidence 99999999999999999999999999999999999999999 9999999998753 588999999999999999999999
Q ss_pred HHHcCCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEcCCCCccccccccHHHHhcCCCCcEEEEcCCCchhcH
Q 006864 247 RAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDE 326 (628)
Q Consensus 247 ~l~~~G~~V~~~d~~~~~~~a~~~g~~~~sl~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~~vde 326 (628)
+|++|||+|++||++..........+...++++++++||+|++|+|++++|+++++++.|++||+|++|||+|||+++|+
T Consensus 155 ~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~l~ell~~aDvV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~ 234 (324)
T 3evt_A 155 KASALGMHVIGVNTTGHPADHFHETVAFTATADALATANFIVNALPLTPTTHHLFSTELFQQTKQQPMLINIGRGPAVDT 234 (324)
T ss_dssp HHHHTTCEEEEEESSCCCCTTCSEEEEGGGCHHHHHHCSEEEECCCCCGGGTTCBSHHHHHTCCSCCEEEECSCGGGBCH
T ss_pred HHHhCCCEEEEECCCcchhHhHhhccccCCHHHHHhhCCEEEEcCCCchHHHHhcCHHHHhcCCCCCEEEEcCCChhhhH
Confidence 99999999999998753221111123345899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCeeEEEeeccCCCCCCCCCccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCC-CCCCcccCCC
Q 006864 327 EALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKEAQEGVAIEIAEAVVGALRGE-LSATAINAPM 405 (628)
Q Consensus 327 ~aL~~aL~~g~i~ga~lDV~~~EP~~~~~~L~~~~nvilTPHig~~T~ea~~~~~~~~~~~i~~~l~g~-~~~~~vn~p~ 405 (628)
+||+++|++|+|+||+||||+.||++.++|||++|||++|||+|++|.|++++++..+++|+.+|++|+ ++.|.||.+.
T Consensus 235 ~aL~~aL~~g~i~gA~lDV~~~EPl~~~~pL~~~~nvilTPHia~~t~~~~~~~~~~~~~nl~~~l~~~~~~~n~V~~~~ 314 (324)
T 3evt_A 235 TALMTALDHHQLSMAALDVTEPEPLPTDHPLWQRDDVLITPHISGQIAHFRATVFPIFAANFAQFVKDGTLVRNQVDLNR 314 (324)
T ss_dssp HHHHHHHHTTSCSEEEESSCSSSSCCTTCGGGGCSSEEECCSCTTCCCCHHHHHHHHHHHHHHHHHHHSCCCSCBCC---
T ss_pred HHHHHHHHhCCceEEEeCCCCCCCCCCCChhhcCCCEEEcCccccChHHHHHHHHHHHHHHHHHHHhCCCCCCceECccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999755 6789999764
Q ss_pred C
Q 006864 406 V 406 (628)
Q Consensus 406 ~ 406 (628)
.
T Consensus 315 ~ 315 (324)
T 3evt_A 315 G 315 (324)
T ss_dssp -
T ss_pred c
Confidence 4
|
| >1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.3e-64 Score=524.99 Aligned_cols=305 Identities=42% Similarity=0.684 Sum_probs=283.3
Q ss_pred CCCeEEEeCCCCHhHHHHhhcCC-cEEEecCCCHhHHHhhcCCCeEEEEcCCCCCCHHHHHhcCCcceeEEecccccCcc
Q 006864 89 PKPTILVSEKLGEAGLAILRSFG-NVECLYDLSPEALCEKISQCDALIVRSGTKVTRSVFEAANGKLKVVGRAGVGIDNV 167 (628)
Q Consensus 89 ~~~~vlv~~~l~~~~~~~l~~~~-~v~~~~~~~~~el~~~~~~~d~liv~~~~~v~~~~l~~~~~~Lk~I~~~g~G~D~i 167 (628)
.|+||++++.+.++..+.|++.+ ++......+.+++.+.+.++|++++++.+++++++++++ |+||||++.|+|||||
T Consensus 2 ~~~~il~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~l~~~-~~Lk~I~~~~~G~d~i 80 (307)
T 1wwk_A 2 KRMKVLVAAPLHEKAIQVLKDAGLEVIYEEYPDEDRLVELVKDVEAIIVRSKPKVTRRVIESA-PKLKVIARAGVGLDNI 80 (307)
T ss_dssp --CEEEECSCCCHHHHHHHHHTTCEEEECSSCCHHHHHHHSTTCSEEEESSCSCBCHHHHTTC-TTCCEEEESSSCCTTB
T ss_pred CceEEEEeCCCCHHHHHHHHhCCeEEEeCCCCCHHHHHHHhcCCEEEEEcCCCCCCHHHHhhC-CCCeEEEECCcccccc
Confidence 36789999999988888888743 454433457889999999999999987667999999988 5999999999999999
Q ss_pred cHhHHHhcCceEEcCCCCChhhHHHHHHHHHHHHHHchhHHHHHHHcCcccccccceeeecCCeEEEEecChhHHHHHHH
Q 006864 168 DLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARR 247 (628)
Q Consensus 168 Dl~aa~~~GI~V~n~p~~~~~avAE~~l~l~L~~~R~i~~~~~~~~~g~W~~~~~~g~~l~GktiGIIGlG~IG~~vA~~ 247 (628)
|+++|+++||.|+|+||+|+.+||||++++||+++|+++++++.+++|.|.+..+.+.++.|+|+||||+|+||+.+|++
T Consensus 81 d~~~~~~~gi~v~n~~g~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~~~~~~~~l~g~~vgIiG~G~IG~~~A~~ 160 (307)
T 1wwk_A 81 DVEAAKEKGIEVVNAPAASSRSVAELAVGLMFSVARKIAFADRKMREGVWAKKEAMGIELEGKTIGIIGFGRIGYQVAKI 160 (307)
T ss_dssp CHHHHHHHTCEEECCGGGGHHHHHHHHHHHHHHHHTTHHHHHHHHTTTCCCTTTCCBCCCTTCEEEEECCSHHHHHHHHH
T ss_pred CHHHHHhCCcEEEECCCCChHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCccCcCCcccCCceEEEEccCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999864567889999999999999999999999
Q ss_pred HHcCCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEcCCCCccccccccHHHHhcCCCCcEEEEcCCCchhcHH
Q 006864 248 AKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEE 327 (628)
Q Consensus 248 l~~~G~~V~~~d~~~~~~~a~~~g~~~~sl~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~~vde~ 327 (628)
|++|||+|++||++...+.+.+.|+...++++++++||+|++|+|++++|+++++++.|+.||+|++|||++||+++|++
T Consensus 161 l~~~G~~V~~~d~~~~~~~~~~~g~~~~~l~ell~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lin~arg~~vd~~ 240 (307)
T 1wwk_A 161 ANALGMNILLYDPYPNEERAKEVNGKFVDLETLLKESDVVTIHVPLVESTYHLINEERLKLMKKTAILINTSRGPVVDTN 240 (307)
T ss_dssp HHHTTCEEEEECSSCCHHHHHHTTCEECCHHHHHHHCSEEEECCCCSTTTTTCBCHHHHHHSCTTCEEEECSCGGGBCHH
T ss_pred HHHCCCEEEEECCCCChhhHhhcCccccCHHHHHhhCCEEEEecCCChHHhhhcCHHHHhcCCCCeEEEECCCCcccCHH
Confidence 99999999999998766556677888789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCeeEEEeeccCCCCCCCCCccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcC
Q 006864 328 ALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKEAQEGVAIEIAEAVVGALRG 394 (628)
Q Consensus 328 aL~~aL~~g~i~ga~lDV~~~EP~~~~~~L~~~~nvilTPHig~~T~ea~~~~~~~~~~~i~~~l~g 394 (628)
+|+++|++|+|+||++|||+.||+++++|||++||+++|||++++|.|++.++...+++|+.+|++|
T Consensus 241 aL~~aL~~g~i~ga~lDv~~~eP~~~~~~L~~~~nviltPh~~~~t~~~~~~~~~~~~~nl~~~~~g 307 (307)
T 1wwk_A 241 ALVKALKEGWIAGAGLDVFEEEPLPKDHPLTKFDNVVLTPHIGASTVEAQERAGVEVAEKVVKILKG 307 (307)
T ss_dssp HHHHHHHHTSSSEEEESCCSSSSCCTTCGGGGCTTEEECSSCTTCBHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhCCCcEEEEecCCCCCCCCCChHHhCCCEEECCccccCcHHHHHHHHHHHHHHHHHHHcC
Confidence 9999999999999999999999998899999999999999999999999999999999999999976
|
| >1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-63 Score=525.26 Aligned_cols=310 Identities=26% Similarity=0.370 Sum_probs=277.0
Q ss_pred CeEEEeCC--CCHhHHHHhhcCC---cEEEecCCCHhHHHhhcCCCeEEEEcCCCCCCHHHHHhcCCc--ceeEEecccc
Q 006864 91 PTILVSEK--LGEAGLAILRSFG---NVECLYDLSPEALCEKISQCDALIVRSGTKVTRSVFEAANGK--LKVVGRAGVG 163 (628)
Q Consensus 91 ~~vlv~~~--l~~~~~~~l~~~~---~v~~~~~~~~~el~~~~~~~d~liv~~~~~v~~~~l~~~~~~--Lk~I~~~g~G 163 (628)
+||++... ..+..++.|++.. ++.+......+++.+.++++|++++++.++++++++++++ + ||+|+++|+|
T Consensus 2 mkil~~~~~~~~~~~~~~l~~~~p~~~v~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~l~~~~-~~~Lk~I~~~~~G 80 (333)
T 1j4a_A 2 TKIFAYAIREDEKPFLKEWEDAHKDVEVEYTDKLLTPETVALAKGADGVVVYQQLDYIAETLQALA-DNGITKMSLRNVG 80 (333)
T ss_dssp CEEEECSCCGGGHHHHHHHHHTCTTSEEEECSSCCCTTTGGGGTTCSEEEECCSSCBCHHHHHHHH-HTTCCEEEESSSC
T ss_pred cEEEEEecCccCHHHHHHHHhhCCCcEEEECCCCCcHHHHHHhcCCcEEEEcCCCCCCHHHHHhcc-ccCCeEEEECCcc
Confidence 47887643 3445566676533 4544433334678888999999999877789999999884 6 9999999999
Q ss_pred cCcccHhHHHhcCceEEcCCCCChhhHHHHHHHHHHHHHHchhHHHHHHHcCcccccccceeeecCCeEEEEecChhHHH
Q 006864 164 IDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSE 243 (628)
Q Consensus 164 ~D~iDl~aa~~~GI~V~n~p~~~~~avAE~~l~l~L~~~R~i~~~~~~~~~g~W~~~~~~g~~l~GktiGIIGlG~IG~~ 243 (628)
|||||+++|+++||.|+|+||+++.+||||++++||++.|+++++++.+++|.|.+....+.+++|+|+||||+|+||+.
T Consensus 81 ~d~id~~~~~~~gi~v~n~p~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~l~g~~vgIiG~G~IG~~ 160 (333)
T 1j4a_A 81 VDNIDMAKAKELGFQITNVPVYSPNAIAEHAAIQAARILRQDKAMDEKVARHDLRWAPTIGREVRDQVVGVVGTGHIGQV 160 (333)
T ss_dssp CTTBCHHHHHHTTCEEECCCCSCHHHHHHHHHHHHHHHHHTHHHHHHHHHTTBCCCTTCCBCCGGGSEEEEECCSHHHHH
T ss_pred cccccHHHHHhCCCEEEeCCCCCchHHHHHHHHHHHHHHcCHHHHHHHHHcCCCccCCcccccCCCCEEEEEccCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999976556788999999999999999999
Q ss_pred HHHHHHcCCCEEEEECCCCChhHHHHcCCccc-CHHHHhccCCEEEEcCCCCccccccccHHHHhcCCCCcEEEEcCCCc
Q 006864 244 VARRAKGLGMNVIAHDPYAPADKARAVGVELV-SFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGG 322 (628)
Q Consensus 244 vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~-sl~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~ 322 (628)
+|++|++|||+|++||++.... +.. .+..+ ++++++++||+|++|+|++++|+++++++.|+.||+|++|||++||+
T Consensus 161 ~A~~l~~~G~~V~~~d~~~~~~-~~~-~~~~~~~l~ell~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lIn~arg~ 238 (333)
T 1j4a_A 161 FMQIMEGFGAKVITYDIFRNPE-LEK-KGYYVDSLDDLYKQADVISLHVPDVPANVHMINDESIAKMKQDVVIVNVSRGP 238 (333)
T ss_dssp HHHHHHHTTCEEEEECSSCCHH-HHH-TTCBCSCHHHHHHHCSEEEECSCCCGGGTTCBSHHHHHHSCTTEEEEECSCGG
T ss_pred HHHHHHHCCCEEEEECCCcchh-HHh-hCeecCCHHHHHhhCCEEEEcCCCcHHHHHHHhHHHHhhCCCCcEEEECCCCc
Confidence 9999999999999999987544 333 35666 89999999999999999999999999999999999999999999999
Q ss_pred hhcHHHHHHHHhCCCeeEEEeeccCCCC--CCCCC-----------ccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHHH
Q 006864 323 VIDEEALVRALDSGVVAQAALDVFTEEP--PAKDS-----------KLVQHENVTVTPHLGASTKEAQEGVAIEIAEAVV 389 (628)
Q Consensus 323 ~vde~aL~~aL~~g~i~ga~lDV~~~EP--~~~~~-----------~L~~~~nvilTPHig~~T~ea~~~~~~~~~~~i~ 389 (628)
++|+++|+++|++|+|+||+||||++|| ++.++ |||++|||++|||+|++|.|++++++..+++|+.
T Consensus 239 ~vd~~aL~~aL~~g~i~gA~LDV~~~EP~~l~~~~~~~~~~~p~~~~L~~~~nvilTPHia~~t~~~~~~~~~~~~~nl~ 318 (333)
T 1j4a_A 239 LVDTDAVIRGLDSGKIFGYAMDVYEGEVGIFNEDWEGKEFPDARLADLIARPNVLVTPKTAFYTTHAVRNMVVKAFDNNL 318 (333)
T ss_dssp GBCHHHHHHHHHHTSEEEEEESCCTTCTTTTTSBCTTSCCSCHHHHHHHHCTTEEECSSCTTCBHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHhCCceEEEEecCCCCCCccccccccccCCccchhhHHhCCCEEECCccccCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999 34443 6999999999999999999999999999999999
Q ss_pred HHHcCCCCCCcccC
Q 006864 390 GALRGELSATAINA 403 (628)
Q Consensus 390 ~~l~g~~~~~~vn~ 403 (628)
+|++|+++.+.||.
T Consensus 319 ~~~~g~~~~~~v~~ 332 (333)
T 1j4a_A 319 ELVEGKEAETPVKV 332 (333)
T ss_dssp HHHTTCCCSSBCCC
T ss_pred HHHcCCCCCccccC
Confidence 99999999999884
|
| >1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-63 Score=526.23 Aligned_cols=311 Identities=27% Similarity=0.406 Sum_probs=275.3
Q ss_pred eEEEeC--CCCHhHHHHhhc-CC-cEEEecCCCHhHHHhhcCCCeEEEEcCCCCCCHHHHHhcCCc--ceeEEecccccC
Q 006864 92 TILVSE--KLGEAGLAILRS-FG-NVECLYDLSPEALCEKISQCDALIVRSGTKVTRSVFEAANGK--LKVVGRAGVGID 165 (628)
Q Consensus 92 ~vlv~~--~l~~~~~~~l~~-~~-~v~~~~~~~~~el~~~~~~~d~liv~~~~~v~~~~l~~~~~~--Lk~I~~~g~G~D 165 (628)
||++.+ +.....++.+.+ .+ ++.+......+++.+.++++|++++++.++++++++++++ + ||+|+++|+|||
T Consensus 2 kil~~~~~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~l~~~~-~~~Lk~I~~~~~G~d 80 (333)
T 1dxy_A 2 KIIAYGARVDEIQYFKQWAKDTGNTLEYHTEFLDENTVEWAKGFDGINSLQTTPYAAGVFEKMH-AYGIKFLTIRNVGTD 80 (333)
T ss_dssp EEEECSCCTTTHHHHHHHHHHHCCEEEECSSCCCTTGGGGGTTCSEEEECCSSCBCHHHHHHHH-HTTCCEEEESSSCCT
T ss_pred EEEEEeccccCHHHHHHHHHhCCeEEEEcCCCChHHHHHHhcCCeEEEEcCCCCCCHHHHHhCc-ccCceEEEEcCcccC
Confidence 677754 445556666644 22 4554443345677888999999999877789999999884 6 999999999999
Q ss_pred cccHhHHHhcCceEEcCCCCChhhHHHHHHHHHHHHHHchhHHHHHHHcCcccc-cccceeeecCCeEEEEecChhHHHH
Q 006864 166 NVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLR-SKYVGVSLVGKTLAVMGFGKVGSEV 244 (628)
Q Consensus 166 ~iDl~aa~~~GI~V~n~p~~~~~avAE~~l~l~L~~~R~i~~~~~~~~~g~W~~-~~~~g~~l~GktiGIIGlG~IG~~v 244 (628)
|||+++|+++||.|+|+||+++.+||||++++||++.|+++++++.+|+|.|.+ ....+.++.|+|+||||+|+||+.+
T Consensus 81 ~id~~~~~~~gI~v~n~p~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~l~g~~vgIiG~G~IG~~~ 160 (333)
T 1dxy_A 81 NIDMTAMKQYGIRLSNVPAYSPAAIAEFALTDTLYLLRNMGKVQAQLQAGDYEKAGTFIGKELGQQTVGVMGTGHIGQVA 160 (333)
T ss_dssp TBCHHHHHHTTCEEECCTTSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCHHHHTCCCCCCGGGSEEEEECCSHHHHHH
T ss_pred ccCHHHHHhCCCEEEeCCCCCchHHHHHHHHHHHHHhhhHHHHHHHHHcCCcccccCCCccCCCCCEEEEECcCHHHHHH
Confidence 999999999999999999999999999999999999999999999999999964 4457889999999999999999999
Q ss_pred HHHHHcCCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEcCCCCccccccccHHHHhcCCCCcEEEEcCCCchh
Q 006864 245 ARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVI 324 (628)
Q Consensus 245 A~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~sl~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~~v 324 (628)
|++|++|||+|++||++.... +.. .+...++++++++||+|++|+|++++|+++++++.|+.||+|++|||++||+++
T Consensus 161 A~~l~~~G~~V~~~d~~~~~~-~~~-~~~~~~l~ell~~aDvV~~~~P~~~~t~~li~~~~l~~mk~ga~lIn~srg~~v 238 (333)
T 1dxy_A 161 IKLFKGFGAKVIAYDPYPMKG-DHP-DFDYVSLEDLFKQSDVIDLHVPGIEQNTHIINEAAFNLMKPGAIVINTARPNLI 238 (333)
T ss_dssp HHHHHHTTCEEEEECSSCCSS-CCT-TCEECCHHHHHHHCSEEEECCCCCGGGTTSBCHHHHHHSCTTEEEEECSCTTSB
T ss_pred HHHHHHCCCEEEEECCCcchh-hHh-ccccCCHHHHHhcCCEEEEcCCCchhHHHHhCHHHHhhCCCCcEEEECCCCccc
Confidence 999999999999999986433 221 245669999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHhCCCeeEEEeeccCCCCC--C--------CC---CccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHH
Q 006864 325 DEEALVRALDSGVVAQAALDVFTEEPP--A--------KD---SKLVQHENVTVTPHLGASTKEAQEGVAIEIAEAVVGA 391 (628)
Q Consensus 325 de~aL~~aL~~g~i~ga~lDV~~~EP~--~--------~~---~~L~~~~nvilTPHig~~T~ea~~~~~~~~~~~i~~~ 391 (628)
|+++|+++|++|+|+||+||||++||+ + .+ +|||++|||++|||+|++|.|++++++..+++|+.+|
T Consensus 239 d~~aL~~aL~~g~i~gA~LDV~~~EP~~~~~~~~~~~~~~~~~~pL~~~~nvi~TPHia~~t~e~~~~~~~~~~~nl~~~ 318 (333)
T 1dxy_A 239 DTQAMLSNLKSGKLAGVGIDTYEYETEDLLNLAKHGSFKDPLWDELLGMPNVVLSPHIAYYTETAVHNMVYFSLQHLVDF 318 (333)
T ss_dssp CHHHHHHHHHTTSEEEEEESSCTTHHHHHHHHHHHSSCCCHHHHHHHTCTTEEECSSCTTCSHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCccEEEEecCCCCCCcccccccccccCccchhHHhcCCCEEECCccccChHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999983 1 12 5899999999999999999999999999999999999
Q ss_pred HcCCCCCCcccCCC
Q 006864 392 LRGELSATAINAPM 405 (628)
Q Consensus 392 l~g~~~~~~vn~p~ 405 (628)
++|+.+.+.||.|.
T Consensus 319 ~~g~~~~~~v~~~~ 332 (333)
T 1dxy_A 319 LTKGETSTEVTGPA 332 (333)
T ss_dssp HHHSCCTTEECC--
T ss_pred HcCCCCCceeCCCC
Confidence 99999999999873
|
| >2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-62 Score=513.89 Aligned_cols=304 Identities=36% Similarity=0.531 Sum_probs=283.1
Q ss_pred CCeEEEeCCCCHhHHHHhhcCC-cEEEecCCCHhHHHhhcCCCeEEEEcCCCCCCHHHHHhcCCcceeEEecccccCccc
Q 006864 90 KPTILVSEKLGEAGLAILRSFG-NVECLYDLSPEALCEKISQCDALIVRSGTKVTRSVFEAANGKLKVVGRAGVGIDNVD 168 (628)
Q Consensus 90 ~~~vlv~~~l~~~~~~~l~~~~-~v~~~~~~~~~el~~~~~~~d~liv~~~~~v~~~~l~~~~~~Lk~I~~~g~G~D~iD 168 (628)
++|||+++++.+...+.|++.+ ++.+....+.+++.+.++++|++++++.+++++++++++ |+||+|++.|+||||||
T Consensus 5 ~mkil~~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~l~~~-~~Lk~I~~~~~G~d~id 83 (313)
T 2ekl_A 5 TVKALITDPIDEILIKTLREKGIQVDYMPEISKEELLNIIGNYDIIVVRSRTKVTKDVIEKG-KKLKIIARAGIGLDNID 83 (313)
T ss_dssp CCEEEECSCCCHHHHHHHHHTTCEEEECTTCCHHHHHHHGGGCSEEEECSSSCBCHHHHHHC-TTCCEEEECSSCCTTBC
T ss_pred ceEEEEECCCCHHHHHHHHhCCcEEEeCCCCCHHHHHHHhcCCeEEEEcCCCCCCHHHHhhC-CCCeEEEEcCCCCCccC
Confidence 4589999999998888888763 554434467889999999999999987778999999998 59999999999999999
Q ss_pred HhHHHhcCceEEcCCCCChhhHHHHHHHHHHHHHHchhHHHHHHHcCcccccccceeeecCCeEEEEecChhHHHHHHHH
Q 006864 169 LQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRA 248 (628)
Q Consensus 169 l~aa~~~GI~V~n~p~~~~~avAE~~l~l~L~~~R~i~~~~~~~~~g~W~~~~~~g~~l~GktiGIIGlG~IG~~vA~~l 248 (628)
+++|+++||.|+|+||+|+.+||||++++||++.|+++++++.+++|.|. .+.+.++.|+|+||||+|+||+.+|++|
T Consensus 84 ~~~~~~~gi~v~n~~g~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~--~~~~~~l~g~~vgIIG~G~IG~~~A~~l 161 (313)
T 2ekl_A 84 TEEAEKRNIKVVYAPGASTDSAVELTIGLMIAAARKMYTSMALAKSGIFK--KIEGLELAGKTIGIVGFGRIGTKVGIIA 161 (313)
T ss_dssp HHHHHHTTCEEECCTTTTHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCC--CCCCCCCTTCEEEEESCSHHHHHHHHHH
T ss_pred HHHHHhCCeEEEeCCCCCchHHHHHHHHHHHHHHhCHHHHHHHHHcCCCC--CCCCCCCCCCEEEEEeeCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999996 3568899999999999999999999999
Q ss_pred HcCCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEcCCCCccccccccHHHHhcCCCCcEEEEcCCCchhcHHH
Q 006864 249 KGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEA 328 (628)
Q Consensus 249 ~~~G~~V~~~d~~~~~~~a~~~g~~~~sl~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~~vde~a 328 (628)
++|||+|++||++.....+.+.|+...++++++++||+|++|+|++++|+++++++.|+.||+|++|||++||+++|+++
T Consensus 162 ~~~G~~V~~~d~~~~~~~~~~~g~~~~~l~ell~~aDvVvl~~P~~~~t~~li~~~~l~~mk~ga~lIn~arg~~vd~~a 241 (313)
T 2ekl_A 162 NAMGMKVLAYDILDIREKAEKINAKAVSLEELLKNSDVISLHVTVSKDAKPIIDYPQFELMKDNVIIVNTSRAVAVNGKA 241 (313)
T ss_dssp HHTTCEEEEECSSCCHHHHHHTTCEECCHHHHHHHCSEEEECCCCCTTSCCSBCHHHHHHSCTTEEEEESSCGGGBCHHH
T ss_pred HHCCCEEEEECCCcchhHHHhcCceecCHHHHHhhCCEEEEeccCChHHHHhhCHHHHhcCCCCCEEEECCCCcccCHHH
Confidence 99999999999987665566778877799999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCeeEEEeeccCCCCCCCCC---ccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCC
Q 006864 329 LVRALDSGVVAQAALDVFTEEPPAKDS---KLVQHENVTVTPHLGASTKEAQEGVAIEIAEAVVGALRGELS 397 (628)
Q Consensus 329 L~~aL~~g~i~ga~lDV~~~EP~~~~~---~L~~~~nvilTPHig~~T~ea~~~~~~~~~~~i~~~l~g~~~ 397 (628)
|+++|++|+++||++|||+.||++ ++ |||++||+++|||++++|.|++++++..+++|+.+|++|++.
T Consensus 242 L~~aL~~g~i~ga~lDv~~~eP~~-~~~~~~L~~~~nviltPH~~~~t~~~~~~~~~~~~~n~~~~~~g~~l 312 (313)
T 2ekl_A 242 LLDYIKKGKVYAYATDVFWNEPPK-EEWELELLKHERVIVTTHIGAQTKEAQKRVAEMTTQNLLNAMKELGM 312 (313)
T ss_dssp HHHHHHTTCEEEEEESCCSSSSCC-SHHHHHHHHSTTEEECCSCTTCSHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcCCCcEEEEecCCCCCCC-CcccchHhhCCCEEECCccCcCcHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 999999999999999999999987 66 999999999999999999999999999999999999999864
|
| >1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-62 Score=513.46 Aligned_cols=306 Identities=31% Similarity=0.483 Sum_probs=283.5
Q ss_pred CCeEEEeCCCCHhHHHHhhcCCcEEEec---CCCHhHHHhhcCCCeEEEEcCCCCCCHHHHHhcCCc-ceeEEecccccC
Q 006864 90 KPTILVSEKLGEAGLAILRSFGNVECLY---DLSPEALCEKISQCDALIVRSGTKVTRSVFEAANGK-LKVVGRAGVGID 165 (628)
Q Consensus 90 ~~~vlv~~~l~~~~~~~l~~~~~v~~~~---~~~~~el~~~~~~~d~liv~~~~~v~~~~l~~~~~~-Lk~I~~~g~G~D 165 (628)
|++|++++.+.++.++.|++.+++++.. ..+.+++.+.++++|++++++.++++++++++++ + ||||++.|+|||
T Consensus 1 m~~vl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~l~~~~-~~Lk~I~~~~~G~d 79 (320)
T 1gdh_A 1 KKKILITWPLPEAAMARARESYDVIAHGDDPKITIDEMIETAKSVDALLITLNEKCRKEVIDRIP-ENIKCISTYSIGFD 79 (320)
T ss_dssp CCEEEESSCCCHHHHHHHHTTSEEEECCSTTCCCHHHHHHHHTTCSEEEEETTSCBCHHHHHHSC-TTCCEEEEESSCCT
T ss_pred CcEEEEcCCCCHHHHHHHHhcCCEEEecCCCCCCHHHHHHHhcCCEEEEECCCCCCCHHHHHhCC-ccceEEEECCcccc
Confidence 3689999999999899998766766543 2577899999999999999877789999999985 8 999999999999
Q ss_pred cccHhHHHhcCceEEcCCCCChhhHHHHHHHHHHHHHHchhHHHHHHHcCccccc---ccceeeecCCeEEEEecChhHH
Q 006864 166 NVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRS---KYVGVSLVGKTLAVMGFGKVGS 242 (628)
Q Consensus 166 ~iDl~aa~~~GI~V~n~p~~~~~avAE~~l~l~L~~~R~i~~~~~~~~~g~W~~~---~~~g~~l~GktiGIIGlG~IG~ 242 (628)
|||+++|+++||.|+|+||+|+.+||||++++||++.|+++++++.+++|.|... .+.+.++.|+||||||+|+||+
T Consensus 80 ~id~~~~~~~gi~v~n~p~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~l~g~~vgIIG~G~IG~ 159 (320)
T 1gdh_A 80 HIDLDACKARGIKVGNAPHGVTVATAEIAMLLLLGSARRAGEGEKMIRTRSWPGWEPLELVGEKLDNKTLGIYGFGSIGQ 159 (320)
T ss_dssp TBCHHHHHHTTCEEECCCCSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCCTTTTCBCCCTTCEEEEECCSHHHH
T ss_pred cccHHHHHhCCcEEEEcCCCCHHHHHHHHHHHHHHHHccHHHHHHHHHcCCCCccccccccCcCCCCCEEEEECcCHHHH
Confidence 9999999999999999999999999999999999999999999999999999731 3467899999999999999999
Q ss_pred HHHHHHHcCCCEEEEECC-CCChhHHHHcCCccc-CHHHHhccCCEEEEcCCCCccccccccHHHHhcCCCCcEEEEcCC
Q 006864 243 EVARRAKGLGMNVIAHDP-YAPADKARAVGVELV-SFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVAR 320 (628)
Q Consensus 243 ~vA~~l~~~G~~V~~~d~-~~~~~~a~~~g~~~~-sl~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aR 320 (628)
.+|++|++|||+|++||+ +.....+.+.|+..+ ++++++++||+|++|+|++++|+++++++.|+.||+|++|||++|
T Consensus 160 ~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVil~~p~~~~t~~~i~~~~l~~mk~gailIn~ar 239 (320)
T 1gdh_A 160 ALAKRAQGFDMDIDYFDTHRASSSDEASYQATFHDSLDSLLSVSQFFSLNAPSTPETRYFFNKATIKSLPQGAIVVNTAR 239 (320)
T ss_dssp HHHHHHHTTTCEEEEECSSCCCHHHHHHHTCEECSSHHHHHHHCSEEEECCCCCTTTTTCBSHHHHTTSCTTEEEEECSC
T ss_pred HHHHHHHHCCCEEEEECCCCcChhhhhhcCcEEcCCHHHHHhhCCEEEEeccCchHHHhhcCHHHHhhCCCCcEEEECCC
Confidence 999999999999999999 876555666788777 899999999999999999999999999999999999999999999
Q ss_pred CchhcHHHHHHHHhCCCeeEEEeeccCCCCCCCCCccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCC
Q 006864 321 GGVIDEEALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKEAQEGVAIEIAEAVVGALRGELSA 398 (628)
Q Consensus 321 g~~vde~aL~~aL~~g~i~ga~lDV~~~EP~~~~~~L~~~~nvilTPHig~~T~ea~~~~~~~~~~~i~~~l~g~~~~ 398 (628)
|+++|+++|.++|++|+|+||++|||+.|| +.++|||++||+|+|||++++|.|++++++..+ +|+.+|++|+++.
T Consensus 240 g~~vd~~aL~~aL~~g~i~gA~lDv~~~eP-~~~~~L~~~~nviltPH~~~~t~~~~~~~~~~~-~nl~~~~~g~~~~ 315 (320)
T 1gdh_A 240 GDLVDNELVVAALEAGRLAYAGFDVFAGEP-NINEGYYDLPNTFLFPHIGSAATQAREDMAHQA-NDLIDALFGGADM 315 (320)
T ss_dssp GGGBCHHHHHHHHHHTSEEEEEESCCTTTT-SCCTTGGGCTTEEECSSCTTCBHHHHHHHHHHH-HHHHHHHHTTSCC
T ss_pred CcccCHHHHHHHHHhCCCcEEEEeCCCCCC-CCCChhhhCCCEEECCcCCcCcHHHHHHHHHHH-HHHHHHHcCCCCc
Confidence 999999999999999999999999999999 789999999999999999999999999999999 9999999998753
|
| >1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-62 Score=520.30 Aligned_cols=308 Identities=24% Similarity=0.343 Sum_probs=275.2
Q ss_pred eEEEeC--CCCHhHHHHhhcCC--cEEEecC-CCHhHHHhhcCCCeEEEEcCCCCCCHHHHHhcCCc--ceeEEeccccc
Q 006864 92 TILVSE--KLGEAGLAILRSFG--NVECLYD-LSPEALCEKISQCDALIVRSGTKVTRSVFEAANGK--LKVVGRAGVGI 164 (628)
Q Consensus 92 ~vlv~~--~l~~~~~~~l~~~~--~v~~~~~-~~~~el~~~~~~~d~liv~~~~~v~~~~l~~~~~~--Lk~I~~~g~G~ 164 (628)
||++.+ +..++.++.|.+.. ++..... .+.+++.+.++++|++++++.++++++++++++ + ||+|++.|+||
T Consensus 2 ki~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~l~~~~-~~~Lk~I~~~~~G~ 80 (331)
T 1xdw_A 2 KVLCYGVRDVELPIFEACNKEFGYDIKCVPDYLNTKETAEMAAGFDAVILRGNCFANKQNLDIYK-KLGVKYILTRTAGT 80 (331)
T ss_dssp EEEECSCCTTTHHHHHHHGGGTCCEEEECSCCSCSHHHHHTTTTCSEEEECTTCCBCHHHHHHHH-HHTCCEEEESSSCC
T ss_pred EEEEEecCccCHHHHHHHHHhcCeEEEECCCCCCHHHHHHHhcCCeEEEEeCCCCCCHHHHhhCc-ccCceEEEEccccc
Confidence 688854 55566777775533 3444332 355888899999999999877889999999884 7 99999999999
Q ss_pred CcccHhHHHhcCceEEcCCCCChhhHHHHHHHHHHHHHHchhHHHHHHHcCcccc-cccceeeecCCeEEEEecChhHHH
Q 006864 165 DNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLR-SKYVGVSLVGKTLAVMGFGKVGSE 243 (628)
Q Consensus 165 D~iDl~aa~~~GI~V~n~p~~~~~avAE~~l~l~L~~~R~i~~~~~~~~~g~W~~-~~~~g~~l~GktiGIIGlG~IG~~ 243 (628)
||||+++|+++||.|+|+||+++.+||||++++||++.|+++++++.+++|.|.+ ....+.++.|||+||||+|+||+.
T Consensus 81 d~id~~~~~~~gI~v~n~p~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~l~g~~vgIiG~G~IG~~ 160 (331)
T 1xdw_A 81 DHIDKEYAKELGFPMAFVPRYSPNAIAELAVTQAMMLLRHTAYTTSRTAKKNFKVDAFMFSKEVRNCTVGVVGLGRIGRV 160 (331)
T ss_dssp TTBCHHHHHHTTCCEECCCCCCHHHHHHHHHHHHHHHHTTHHHHHHHHTTTCCCCCSTTCCCCGGGSEEEEECCSHHHHH
T ss_pred cccCHHHHHhCCcEEEeCCCCCcHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCccccCcCccCCCCCEEEEECcCHHHHH
Confidence 9999999999999999999999999999999999999999999999999999964 445688999999999999999999
Q ss_pred HHHHHHcCCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEcCCCCccccccccHHHHhcCCCCcEEEEcCCCch
Q 006864 244 VARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGV 323 (628)
Q Consensus 244 vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~sl~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~~ 323 (628)
+|++|++|||+|++||++.... +. ..+...++++++++||+|++|+|++++|+++++++.|++||+|++|||++||++
T Consensus 161 ~A~~l~~~G~~V~~~d~~~~~~-~~-~~~~~~~l~ell~~aDvV~~~~p~t~~t~~li~~~~l~~mk~ga~lin~srg~~ 238 (331)
T 1xdw_A 161 AAQIFHGMGATVIGEDVFEIKG-IE-DYCTQVSLDEVLEKSDIITIHAPYIKENGAVVTRDFLKKMKDGAILVNCARGQL 238 (331)
T ss_dssp HHHHHHHTTCEEEEECSSCCCS-CT-TTCEECCHHHHHHHCSEEEECCCCCTTTCCSBCHHHHHTSCTTEEEEECSCGGG
T ss_pred HHHHHHHCCCEEEEECCCccHH-HH-hccccCCHHHHHhhCCEEEEecCCchHHHHHhCHHHHhhCCCCcEEEECCCccc
Confidence 9999999999999999986433 22 225566999999999999999999999999999999999999999999999999
Q ss_pred hcHHHHHHHHhCCCeeEEEeeccCCCCC--CCC-------C----ccccC-CcEEEcCCCCCCcHHHHHHHHHHHHHHHH
Q 006864 324 IDEEALVRALDSGVVAQAALDVFTEEPP--AKD-------S----KLVQH-ENVTVTPHLGASTKEAQEGVAIEIAEAVV 389 (628)
Q Consensus 324 vde~aL~~aL~~g~i~ga~lDV~~~EP~--~~~-------~----~L~~~-~nvilTPHig~~T~ea~~~~~~~~~~~i~ 389 (628)
+|+++|+++|++|+|+||+||||++||+ +.+ + |||++ |||++|||+|++|.|++++++..+++|+.
T Consensus 239 vd~~aL~~aL~~g~i~gA~LDV~~~EP~~~~~~~~~~~~~~~~~~~L~~~~~nvilTPHia~~t~~~~~~~~~~~~~nl~ 318 (331)
T 1xdw_A 239 VDTEAVIEAVESGKLGGYGCDVLDGEASVFGKDLEGQKLENPLFEKLVDLYPRVLITPHLGSYTDEAVKNMVEVSYQNLK 318 (331)
T ss_dssp BCHHHHHHHHHHTSEEEEEESCCTTGGGTTTCCCTTSCCSSHHHHHHHHTTTTEEECCSCTTCSHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHhCCceEEEEecCCCCCCcccccccccccCccchHHHHhCCCCEEEcCccccChHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999994 222 3 79999 99999999999999999999999999999
Q ss_pred HHHcCCCCCCccc
Q 006864 390 GALRGELSATAIN 402 (628)
Q Consensus 390 ~~l~g~~~~~~vn 402 (628)
+|++|+++.|.||
T Consensus 319 ~~~~g~~~~~~v~ 331 (331)
T 1xdw_A 319 DLAETGDCPNKIK 331 (331)
T ss_dssp HHHHHSCCTTBCC
T ss_pred HHHcCCCCCCCCC
Confidence 9999999888886
|
| >2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-61 Score=509.69 Aligned_cols=304 Identities=34% Similarity=0.493 Sum_probs=280.3
Q ss_pred CeEEEeCCCCHhHHHHhhcC-CcEEEec--CCCHhHHHhhcCCCeEEEEcCCCCCCHHHHHhcCCcceeEEecccccCcc
Q 006864 91 PTILVSEKLGEAGLAILRSF-GNVECLY--DLSPEALCEKISQCDALIVRSGTKVTRSVFEAANGKLKVVGRAGVGIDNV 167 (628)
Q Consensus 91 ~~vlv~~~l~~~~~~~l~~~-~~v~~~~--~~~~~el~~~~~~~d~liv~~~~~v~~~~l~~~~~~Lk~I~~~g~G~D~i 167 (628)
||||+++.++++.++.|++. +++.+.. ..+.+++.+.++++|++++++.+++++++++++ |+||||+++|+|||||
T Consensus 1 ~~vl~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~l~~~-~~Lk~i~~~~~G~d~i 79 (311)
T 2cuk_A 1 MRVLVTRTLPGKALDRLRERGLEVEVHRGLFLPKAELLKRVEGAVGLIPTVEDRIDAEVMDRA-KGLKVIACYSVGVDHV 79 (311)
T ss_dssp CEEEESSCCSSSTTHHHHHTTCEEEECCSSCCCHHHHHHHHTTCSEEECCTTSCBCHHHHHHS-TTCCEEECSSSCCTTB
T ss_pred CEEEEeCCCCHHHHHHHHhcCCeEEEecCCCCCHHHHHHHhcCCeEEEEcCCCCCCHHHHhhC-CCCeEEEECCcCcccc
Confidence 57899998888888888887 5766542 347789999999999999987778999999998 5999999999999999
Q ss_pred cHhHHHhcCceEEcCCCCChhhHHHHHHHHHHHHHHchhHHHHHHHcCccccc---ccceeeecCCeEEEEecChhHHHH
Q 006864 168 DLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRS---KYVGVSLVGKTLAVMGFGKVGSEV 244 (628)
Q Consensus 168 Dl~aa~~~GI~V~n~p~~~~~avAE~~l~l~L~~~R~i~~~~~~~~~g~W~~~---~~~g~~l~GktiGIIGlG~IG~~v 244 (628)
|+++|+++||.|+|+||+|+.+||||++++||++.|+++++++.+++|.|.+. .+.+.++.|+|+||||+|+||+.+
T Consensus 80 d~~~~~~~gi~v~n~~~~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~l~g~~vgIIG~G~IG~~~ 159 (311)
T 2cuk_A 80 DLEAARERGIRVTHTPGVLTEATADLTLALLLAVARRVVEGAAYARDGLWKAWHPELLLGLDLQGLTLGLVGMGRIGQAV 159 (311)
T ss_dssp CHHHHHTTTCEEECCCSTTHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCCTTTTCBCCCTTCEEEEECCSHHHHHH
T ss_pred CHHHHHhCCcEEEECCCCChHHHHHHHHHHHHHHHcChHHHHHHHHcCCCCccccccccCcCCCCCEEEEEEECHHHHHH
Confidence 99999999999999999999999999999999999999999999999999642 235789999999999999999999
Q ss_pred HHHHHcCCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEcCCCCccccccccHHHHhcCCCCcEEEEcCCCchh
Q 006864 245 ARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVI 324 (628)
Q Consensus 245 A~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~sl~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~~v 324 (628)
|++|++|||+|++||++..... +...++++++++||+|++|+|++++|+++++++.|+.||+|+++||++||+++
T Consensus 160 A~~l~~~G~~V~~~d~~~~~~~-----~~~~~l~ell~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lin~srg~~v 234 (311)
T 2cuk_A 160 AKRALAFGMRVVYHARTPKPLP-----YPFLSLEELLKEADVVSLHTPLTPETHRLLNRERLFAMKRGAILLNTARGALV 234 (311)
T ss_dssp HHHHHHTTCEEEEECSSCCSSS-----SCBCCHHHHHHHCSEEEECCCCCTTTTTCBCHHHHTTSCTTCEEEECSCGGGB
T ss_pred HHHHHHCCCEEEEECCCCcccc-----cccCCHHHHHhhCCEEEEeCCCChHHHhhcCHHHHhhCCCCcEEEECCCCCcc
Confidence 9999999999999999864322 34568999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHhCCCeeEEEeeccCCCCCCCCCccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCcc
Q 006864 325 DEEALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKEAQEGVAIEIAEAVVGALRGELSATAI 401 (628)
Q Consensus 325 de~aL~~aL~~g~i~ga~lDV~~~EP~~~~~~L~~~~nvilTPHig~~T~ea~~~~~~~~~~~i~~~l~g~~~~~~v 401 (628)
|+++|.++|+ |+|+||++|||+.||++.++|||++||+|+|||++++|.|++++++..+++|+.+|++|+.+.|.|
T Consensus 235 d~~aL~~aL~-g~i~ga~lDv~~~eP~~~~~~L~~~~nviltPh~~~~t~~~~~~~~~~~~~nl~~~~~g~~~~~~v 310 (311)
T 2cuk_A 235 DTEALVEALR-GHLFGAGLDVTDPEPLPPGHPLYALPNAVITPHIGSAGRTTRERMAEVAVENLLAVLEGREPPNPV 310 (311)
T ss_dssp CHHHHHHHHT-TTSSEEEESSCSSSSCCTTSGGGGCTTEEECCSCTTCBHHHHHHHHHHHHHHHHHHHTTCCCSSBC
T ss_pred CHHHHHHHHh-CcCCEEEEeeCCCCCCCCCChhhhCCCEEECCcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCCcc
Confidence 9999999999 999999999999999888999999999999999999999999999999999999999999887765
|
| >2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-62 Score=526.74 Aligned_cols=314 Identities=26% Similarity=0.355 Sum_probs=283.5
Q ss_pred CCCCeEEEeCCCCHhHHHHhhcCC-cEEEecC--CCHhHHHhhcCCCeEEEEcCC--CCCCHHHHHhcCCcceeEEeccc
Q 006864 88 TPKPTILVSEKLGEAGLAILRSFG-NVECLYD--LSPEALCEKISQCDALIVRSG--TKVTRSVFEAANGKLKVVGRAGV 162 (628)
Q Consensus 88 ~~~~~vlv~~~l~~~~~~~l~~~~-~v~~~~~--~~~~el~~~~~~~d~liv~~~--~~v~~~~l~~~~~~Lk~I~~~g~ 162 (628)
..+|+||+.+...+...+.|++.+ ++.+... .+.+++.+.++++|+++++.. .++++++++++ |+||+|+++|+
T Consensus 15 ~~~~~vl~~d~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~l~~~-~~Lk~I~~~~~ 93 (364)
T 2j6i_A 15 ADEEKLYGCTENKLGIANWLKDQGHELITTSDKEGGNSVLDQHIPDADIIITTPFHPAYITKERIDKA-KKLKLVVVAGV 93 (364)
T ss_dssp HHCTTCTTBTTTGGGCHHHHHHTTCEEEEESCCSSTTSHHHHHGGGCSEEEECTTSCCCBCHHHHHHC-TTCCEEEESSS
T ss_pred ccCceEEEecCccHHHHHHHHhCCCEEEEcCCCCCCHHHHHHHhhCCeEEEecCcCCCCCCHHHHhhC-CCCeEEEECCc
Confidence 357889999988888788888754 6655432 246788899999999998652 46999999998 59999999999
Q ss_pred ccCcccHhHHHhc--CceEEcCCCCChhhHHHHHHHHHHHHHHchhHHHHHHHcCcccccc--cceeeecCCeEEEEecC
Q 006864 163 GIDNVDLQAATEF--GCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSK--YVGVSLVGKTLAVMGFG 238 (628)
Q Consensus 163 G~D~iDl~aa~~~--GI~V~n~p~~~~~avAE~~l~l~L~~~R~i~~~~~~~~~g~W~~~~--~~g~~l~GktiGIIGlG 238 (628)
|+||||+++|+++ ||.|+|+||+|+.+||||++++||++.|+++++++.+++|.|.+.. ..+.+++|+|+||||+|
T Consensus 94 G~d~id~~~~~~~~~gI~V~n~pg~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~l~g~tvgIIG~G 173 (364)
T 2j6i_A 94 GSDHIDLDYINQTGKKISVLEVTGSNVVSVAEHVVMTMLVLVRNFVPAHEQIINHDWEVAAIAKDAYDIEGKTIATIGAG 173 (364)
T ss_dssp CCTTBCHHHHHHHTCCCEEEECTTSSHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHTTCCCSTTCEEEEECCS
T ss_pred ccccccHHHHHhcCCCEEEEECCCcCcHHHHHHHHHHHHHHHhChHHHHHHHHhCCCCcCcccCCcccCCCCEEEEECcC
Confidence 9999999999999 9999999999999999999999999999999999999999997532 35789999999999999
Q ss_pred hhHHHHHHHHHcCCCE-EEEECCCC-ChhHHHHcCCccc-CHHHHhccCCEEEEcCCCCccccccccHHHHhcCCCCcEE
Q 006864 239 KVGSEVARRAKGLGMN-VIAHDPYA-PADKARAVGVELV-SFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRI 315 (628)
Q Consensus 239 ~IG~~vA~~l~~~G~~-V~~~d~~~-~~~~a~~~g~~~~-sl~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gail 315 (628)
+||+.+|++|++|||+ |++||++. ..+.+.+.|+..+ ++++++++||+|++|+|++++|+++++++.|++||+|++|
T Consensus 174 ~IG~~vA~~l~~~G~~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~ga~l 253 (364)
T 2j6i_A 174 RIGYRVLERLVPFNPKELLYYDYQALPKDAEEKVGARRVENIEELVAQADIVTVNAPLHAGTKGLINKELLSKFKKGAWL 253 (364)
T ss_dssp HHHHHHHHHHGGGCCSEEEEECSSCCCHHHHHHTTEEECSSHHHHHHTCSEEEECCCCSTTTTTCBCHHHHTTSCTTEEE
T ss_pred HHHHHHHHHHHhCCCcEEEEECCCccchhHHHhcCcEecCCHHHHHhcCCEEEECCCCChHHHHHhCHHHHhhCCCCCEE
Confidence 9999999999999997 99999876 4455667787665 8999999999999999999999999999999999999999
Q ss_pred EEcCCCchhcHHHHHHHHhCCCeeEEEeeccCCCCCCCCCccccC--C---cEEEcCCCCCCcHHHHHHHHHHHHHHHHH
Q 006864 316 VNVARGGVIDEEALVRALDSGVVAQAALDVFTEEPPAKDSKLVQH--E---NVTVTPHLGASTKEAQEGVAIEIAEAVVG 390 (628)
Q Consensus 316 IN~aRg~~vde~aL~~aL~~g~i~ga~lDV~~~EP~~~~~~L~~~--~---nvilTPHig~~T~ea~~~~~~~~~~~i~~ 390 (628)
||++||+++|+++|+++|++|+|+||+||||++||++.++|||.+ | ||++|||+|++|.|++.+++..+++|+.+
T Consensus 254 In~arG~~vd~~aL~~aL~~g~i~gA~LDVf~~EP~~~~~pL~~~~~~~~~nvilTPHia~~t~e~~~~~~~~~~~nl~~ 333 (364)
T 2j6i_A 254 VNTARGAICVAEDVAAALESGQLRGYGGDVWFPQPAPKDHPWRDMRNKYGAGNAMTPHYSGTTLDAQTRYAQGTVNILES 333 (364)
T ss_dssp EECSCGGGBCHHHHHHHHHHTSEEEEEESCCSSSSCCTTCHHHHCCCTTSCCEEECCSCGGGSHHHHHHHHHHHHHHHHH
T ss_pred EECCCCchhCHHHHHHHHHcCCCcEEEEecCCCCCCCCCChHHhccCCccCcEEECCccCcCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999 9 99999999999999999999999999999
Q ss_pred HHcCCCCCCccc
Q 006864 391 ALRGELSATAIN 402 (628)
Q Consensus 391 ~l~g~~~~~~vn 402 (628)
|++|+.+...+|
T Consensus 334 ~~~g~~~~~~~n 345 (364)
T 2j6i_A 334 FFTGKFDYRPQD 345 (364)
T ss_dssp HHTTCCCCCGGG
T ss_pred HHcCCCCCCCCc
Confidence 999995444444
|
| >2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-61 Score=516.02 Aligned_cols=321 Identities=26% Similarity=0.356 Sum_probs=290.1
Q ss_pred CCCCeEEEeCC-C--CHhHHHHhhcCCcEEEecCCCHhHHHhhcC-----CCeEEEEcC------CCCCCHHHHHhcCCc
Q 006864 88 TPKPTILVSEK-L--GEAGLAILRSFGNVECLYDLSPEALCEKIS-----QCDALIVRS------GTKVTRSVFEAANGK 153 (628)
Q Consensus 88 ~~~~~vlv~~~-l--~~~~~~~l~~~~~v~~~~~~~~~el~~~~~-----~~d~liv~~------~~~v~~~~l~~~~~~ 153 (628)
|.||+||++++ + .+..++.|++.+++......+.+++.+.++ ++|++++++ .+++++++|++++++
T Consensus 1 m~~~~vl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~ 80 (348)
T 2w2k_A 1 MPRPRVLLLGDPARHLDDLWSDFQQKFEVIPANLTTHDGFKQALREKRYGDFEAIIKLAVENGTESYPWNADLISHLPSS 80 (348)
T ss_dssp -CCCEEEECSSCCSSCHHHHHHHHHHSEEEECCCCCHHHHHHHHHTTTTCCCSEEEECSTTTTGGGCCBCHHHHTTSCTT
T ss_pred CCCcEEEEECCccccChHHHHHHHhcceEEecCCCCHHHHHHHhhhcccCCeEEEEEcccccccccCCCCHHHHHhcccC
Confidence 45789999987 5 367788887766776655568899988887 899988752 358999999988546
Q ss_pred ceeEEecccccCcccHhHHHhcCceEEcCCCCChhhHHHHHHHHHHHHHHchhHHHHHHHcCc---ccccc----cceee
Q 006864 154 LKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGK---WLRSK----YVGVS 226 (628)
Q Consensus 154 Lk~I~~~g~G~D~iDl~aa~~~GI~V~n~p~~~~~avAE~~l~l~L~~~R~i~~~~~~~~~g~---W~~~~----~~g~~ 226 (628)
||+|+++|+||||||+++|+++||.|+|+||+|+.+||||++++||+++|+++++++.+++|. |.+.. ..|.+
T Consensus 81 Lk~I~~~~~G~d~id~~~~~~~gI~v~n~p~~~~~~vAe~~~~l~L~~~R~~~~~~~~~~~g~~~~w~~~~~~~~~~~~~ 160 (348)
T 2w2k_A 81 LKVFAAAGAGFDWLDLDALNERGVAFANSRGAGDTATSDLALYLILSVFRLASYSERAARTGDPETFNRVHLEIGKSAHN 160 (348)
T ss_dssp CCEEEESSSCCTTBCHHHHHHTTCEEECCTTTTHHHHHHHHHHHHHHHHHTHHHHHHHHTTCCHHHHHHHHHHHHTTCCC
T ss_pred ceEEEECCccccccCHHHHHhCCcEEEECCCCCcHHHHHHHHHHHHHHHhChHHHHHHHHcCCCcccccccccccccCcC
Confidence 999999999999999999999999999999999999999999999999999999999999999 95321 35789
Q ss_pred ecCCeEEEEecChhHHHHHHHHH-cCCCEEEEECCCC-ChhHHHHcCCccc-CHHHHhccCCEEEEcCCCCccccccccH
Q 006864 227 LVGKTLAVMGFGKVGSEVARRAK-GLGMNVIAHDPYA-PADKARAVGVELV-SFDQALATADFISLHMPLNPTTSKIFND 303 (628)
Q Consensus 227 l~GktiGIIGlG~IG~~vA~~l~-~~G~~V~~~d~~~-~~~~a~~~g~~~~-sl~ell~~aDvV~l~~Plt~~t~~li~~ 303 (628)
++||||||||+|+||+.+|++++ +|||+|++||++. ..+.+.+.|+..+ ++++++++||+|++|+|++++|++++++
T Consensus 161 l~g~~vgIIG~G~IG~~vA~~l~~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVil~vp~~~~t~~li~~ 240 (348)
T 2w2k_A 161 PRGHVLGAVGLGAIQKEIARKAVHGLGMKLVYYDVAPADAETEKALGAERVDSLEELARRSDCVSVSVPYMKLTHHLIDE 240 (348)
T ss_dssp STTCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSCCCHHHHHHHTCEECSSHHHHHHHCSEEEECCCCSGGGTTCBCH
T ss_pred CCCCEEEEEEECHHHHHHHHHHHHhcCCEEEEECCCCcchhhHhhcCcEEeCCHHHHhccCCEEEEeCCCChHHHHHhhH
Confidence 99999999999999999999999 9999999999986 4444556687776 8999999999999999999999999999
Q ss_pred HHHhcCCCCcEEEEcCCCchhcHHHHHHHHhCCCeeEEEeeccCCCCCCCCCccccCCcEEEcCCCCCCcHHHHHHHHHH
Q 006864 304 ETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKEAQEGVAIE 383 (628)
Q Consensus 304 ~~l~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~ga~lDV~~~EP~~~~~~L~~~~nvilTPHig~~T~ea~~~~~~~ 383 (628)
+.++.||+|++|||++||+++|+++|.++|++|+|+||++|||+.|| +.+++||.+||||+|||+|+.|.|++.+++..
T Consensus 241 ~~l~~mk~gailin~srg~~vd~~aL~~aL~~~~i~gaglDv~~~EP-~~~~~L~~~~nviltPH~~~~t~e~~~~~~~~ 319 (348)
T 2w2k_A 241 AFFAAMKPGSRIVNTARGPVISQDALIAALKSGKLLSAGLDVHEFEP-QVSKELIEMKHVTLTTHIGGVAIETFHEFERL 319 (348)
T ss_dssp HHHHHSCTTEEEEECSCGGGBCHHHHHHHHHTTSEEEEEESSCTTTT-SCCHHHHTSSSEEECCSCTTCSHHHHHHHHHH
T ss_pred HHHhcCCCCCEEEECCCCchhCHHHHHHHHHhCCceEEEeccCCCCC-CCCchhhcCCCEEEcCcCCCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999 56889999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCCcccCCCCCcc
Q 006864 384 IAEAVVGALRGELSATAINAPMVPSE 409 (628)
Q Consensus 384 ~~~~i~~~l~g~~~~~~vn~p~~~~~ 409 (628)
+++||.+|++|+.+.+.||.|.+.++
T Consensus 320 ~~~ni~~~~~g~~~~~~v~~~~~~~~ 345 (348)
T 2w2k_A 320 TMTNIDRFLLQGKPLLTPAGKVFAPS 345 (348)
T ss_dssp HHHHHHHHHHTCCCCSSBCSCCCCCC
T ss_pred HHHHHHHHHcCCCCcceecccccCcc
Confidence 99999999999999999999887664
|
| >3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-61 Score=511.27 Aligned_cols=309 Identities=25% Similarity=0.352 Sum_probs=282.2
Q ss_pred CCCCeEEEeCCCCHhHHHHhhcCCcEEEec-CCCHhH-HHhhcCCCeEEEEcCCCCCCHHHHHhcCCcceeEEecccccC
Q 006864 88 TPKPTILVSEKLGEAGLAILRSFGNVECLY-DLSPEA-LCEKISQCDALIVRSGTKVTRSVFEAANGKLKVVGRAGVGID 165 (628)
Q Consensus 88 ~~~~~vlv~~~l~~~~~~~l~~~~~v~~~~-~~~~~e-l~~~~~~~d~liv~~~~~v~~~~l~~~~~~Lk~I~~~g~G~D 165 (628)
|.||+||+++++.+..++.|++.+++.... ..+.++ +.+.++++|++++++.+++++++++++ |+||+|+++|+|||
T Consensus 21 m~~~~vl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~l~~~-p~Lk~I~~~~~G~d 99 (333)
T 3ba1_A 21 MEAIGVLMMCPMSTYLEQELDKRFKLFRYWTQPAQRDFLALQAESIRAVVGNSNAGADAELIDAL-PKLEIVSSFSVGLD 99 (333)
T ss_dssp -CCCEEEECSCCCHHHHHHHHHHSEEEEGGGCSSHHHHHHHHTTTEEEEEECSSSCBCHHHHHHC-TTCCEEEESSSCCT
T ss_pred CCCCEEEEeCCCCHHHHHHHHhcCCEEEecCCCChHHHHHHHhCCCEEEEEcCCCCCCHHHHhhC-CCCcEEEEcCcccc
Confidence 667899999999999999998766766543 234445 666789999999987778999999998 59999999999999
Q ss_pred cccHhHHHhcCceEEcCCCCChhhHHHHHHHHHHHHHHchhHHHHHHHcCcccccc-cceeeecCCeEEEEecChhHHHH
Q 006864 166 NVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSK-YVGVSLVGKTLAVMGFGKVGSEV 244 (628)
Q Consensus 166 ~iDl~aa~~~GI~V~n~p~~~~~avAE~~l~l~L~~~R~i~~~~~~~~~g~W~~~~-~~g~~l~GktiGIIGlG~IG~~v 244 (628)
|||+++|+++||.|+|+||+|+.+||||++++||+++|++.++++.+|+|.|.+.. ..|.+++||+|||||+|+||+.+
T Consensus 100 ~id~~~~~~~gI~v~n~pg~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~l~g~~vgIIG~G~iG~~v 179 (333)
T 3ba1_A 100 KVDLIKCEEKGVRVTNTPDVLTDDVADLAIGLILAVLRRICECDKYVRRGAWKFGDFKLTTKFSGKRVGIIGLGRIGLAV 179 (333)
T ss_dssp TBCHHHHHHHTCEEECCCSTTHHHHHHHHHHHHHHHHTTHHHHHHHHHTTGGGGCCCCCCCCCTTCCEEEECCSHHHHHH
T ss_pred ccCHHHHHhCCcEEEECCCcchHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCccccccccccCCCEEEEECCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999997533 35789999999999999999999
Q ss_pred HHHHHcCCCEEEEECCCCChhHHHHcCCc-ccCHHHHhccCCEEEEcCCCCccccccccHHHHhcCCCCcEEEEcCCCch
Q 006864 245 ARRAKGLGMNVIAHDPYAPADKARAVGVE-LVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGV 323 (628)
Q Consensus 245 A~~l~~~G~~V~~~d~~~~~~~a~~~g~~-~~sl~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~~ 323 (628)
|++|++|||+|++||++.... .|+. ..++++++++||+|++|+|++++|+++++++.|+.||+|++|||++||.+
T Consensus 180 A~~l~~~G~~V~~~dr~~~~~----~g~~~~~~l~ell~~aDvVil~vP~~~~t~~li~~~~l~~mk~gailIn~srG~~ 255 (333)
T 3ba1_A 180 AERAEAFDCPISYFSRSKKPN----TNYTYYGSVVELASNSDILVVACPLTPETTHIINREVIDALGPKGVLINIGRGPH 255 (333)
T ss_dssp HHHHHTTTCCEEEECSSCCTT----CCSEEESCHHHHHHTCSEEEECSCCCGGGTTCBCHHHHHHHCTTCEEEECSCGGG
T ss_pred HHHHHHCCCEEEEECCCchhc----cCceecCCHHHHHhcCCEEEEecCCChHHHHHhhHHHHhcCCCCCEEEECCCCch
Confidence 999999999999999886432 2544 34899999999999999999999999999999999999999999999999
Q ss_pred hcHHHHHHHHhCCCeeEEEeeccCCCCCCCCCccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCccc
Q 006864 324 IDEEALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKEAQEGVAIEIAEAVVGALRGELSATAIN 402 (628)
Q Consensus 324 vde~aL~~aL~~g~i~ga~lDV~~~EP~~~~~~L~~~~nvilTPHig~~T~ea~~~~~~~~~~~i~~~l~g~~~~~~vn 402 (628)
+|+++|+++|++|+++||++|||+.||++. +|||++||||+|||+|+.|.|++++++..+++|+.+|++|+++.+.||
T Consensus 256 vd~~aL~~aL~~g~i~ga~lDv~~~EP~~~-~~L~~~~nviltPH~~~~t~e~~~~~~~~~~~nl~~~~~g~~~~~~Vn 333 (333)
T 3ba1_A 256 VDEPELVSALVEGRLGGAGLDVFEREPEVP-EKLFGLENVVLLPHVGSGTVETRKVMADLVVGNLEAHFSGKPLLTPVV 333 (333)
T ss_dssp BCHHHHHHHHHHTSSCEEEESCCTTTTCCC-GGGGGCTTEEECSSCTTCSHHHHHHHHHHHHHHHHHHHHTCCCSSBCC
T ss_pred hCHHHHHHHHHcCCCeEEEEecCCCCCCCc-chhhcCCCEEECCcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCCCCC
Confidence 999999999999999999999999999865 999999999999999999999999999999999999999999988886
|
| >2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-61 Score=521.82 Aligned_cols=298 Identities=26% Similarity=0.369 Sum_probs=272.0
Q ss_pred HHhhcCC-cEEEecC--CCHhHHHhhcCCCeEEEEcC--CCCCCHHHHHhcCCcceeEEecccccCcccHhHHHhcCceE
Q 006864 105 AILRSFG-NVECLYD--LSPEALCEKISQCDALIVRS--GTKVTRSVFEAANGKLKVVGRAGVGIDNVDLQAATEFGCLV 179 (628)
Q Consensus 105 ~~l~~~~-~v~~~~~--~~~~el~~~~~~~d~liv~~--~~~v~~~~l~~~~~~Lk~I~~~g~G~D~iDl~aa~~~GI~V 179 (628)
+.|++.+ ++.+.++ .+.+++.+.++++|+++++. .+++++++|+++ |+||+|+++|+|+||||+++|+++||.|
T Consensus 61 ~~l~~~g~~v~~~~~~~~~~~~l~~~l~~ad~li~~~~~~~~i~~~~l~~~-p~Lk~I~~~g~G~d~iD~~aa~~~gI~V 139 (393)
T 2nac_A 61 KYLESNGHTLVVTSDKDGPDSVFERELVDADVVISQPFWPAYLTPERIAKA-KNLKLALTAGIGSDHVDLQSAIDRNVTV 139 (393)
T ss_dssp HHHHHTTCEEEEESCCSSTTSHHHHHHTTCSEEEEBTTBCCCBCHHHHHHC-TTCCEEEESSSCCTTBCHHHHHHTTCEE
T ss_pred HHHHhCCCEEEEecCCCCCHHHHHHhccCCCEEEEcCccCCCCCHHHHhhC-CCCcEEEEcCccccccCHHHHhcCCEEE
Confidence 4666654 6655333 24567889999999999874 357999999998 5999999999999999999999999999
Q ss_pred EcCCCCChhhHHHHHHHHHHHHHHchhHHHHHHHcCcccccc--cceeeecCCeEEEEecChhHHHHHHHHHcCCCEEEE
Q 006864 180 VNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSK--YVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIA 257 (628)
Q Consensus 180 ~n~p~~~~~avAE~~l~l~L~~~R~i~~~~~~~~~g~W~~~~--~~g~~l~GktiGIIGlG~IG~~vA~~l~~~G~~V~~ 257 (628)
+|+|++|+.+||||++++||++.|++.++++.+++|+|+... ..+.+|+|||+||||+|+||+.+|++|++|||+|++
T Consensus 140 ~n~~g~~~~~VAE~al~liL~~~R~~~~~~~~~~~g~W~~~~~~~~~~~l~gktvGIIGlG~IG~~vA~~l~a~G~~V~~ 219 (393)
T 2nac_A 140 AEVTYCNSISVAEHVVMMILSLVRNYLPSHEWARKGGWNIADCVSHAYDLEAMHVGTVAAGRIGLAVLRRLAPFDVHLHY 219 (393)
T ss_dssp EECTTTTHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHTTCCCCTTCEEEEECCSHHHHHHHHHHGGGTCEEEE
T ss_pred EeCCCcccHHHHHHHHHHHHHHHhccHHHHHHHHcCCCCccccccCCccCCCCEEEEEeECHHHHHHHHHHHhCCCEEEE
Confidence 999999999999999999999999999999999999997532 247899999999999999999999999999999999
Q ss_pred ECCCC-ChhHHHHcCCcc-cCHHHHhccCCEEEEcCCCCccccccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhC
Q 006864 258 HDPYA-PADKARAVGVEL-VSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDS 335 (628)
Q Consensus 258 ~d~~~-~~~~a~~~g~~~-~sl~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~~vde~aL~~aL~~ 335 (628)
||++. ..+.+...|+.. .++++++++||+|++|+|++++|+++|+++.|++||+|++|||++||+++|+++|+++|++
T Consensus 220 ~d~~~~~~~~~~~~G~~~~~~l~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~ 299 (393)
T 2nac_A 220 TDRHRLPESVEKELNLTWHATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTARGKLCDRDAVARALES 299 (393)
T ss_dssp ECSSCCCHHHHHHHTCEECSSHHHHGGGCSEEEECSCCCTTTTTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHT
T ss_pred EcCCccchhhHhhcCceecCCHHHHHhcCCEEEEecCCchHHHHHhhHHHHhhCCCCCEEEECCCchHhhHHHHHHHHHc
Confidence 99986 445566678775 4899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeeEEEeeccCCCCCCCCCccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCcccC
Q 006864 336 GVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKEAQEGVAIEIAEAVVGALRGELSATAINA 403 (628)
Q Consensus 336 g~i~ga~lDV~~~EP~~~~~~L~~~~nvilTPHig~~T~ea~~~~~~~~~~~i~~~l~g~~~~~~vn~ 403 (628)
|+|+||+||||+.||++.++|||++|||++|||+|+.|.|++++++..+++||.+|++|+++.|.++.
T Consensus 300 g~i~gA~lDV~~~EP~~~~~pL~~~~nvilTPHia~~T~e~~~~~~~~~~~nl~~~~~G~~~~~~~~~ 367 (393)
T 2nac_A 300 GRLAGYAGDVWFPQPAPKDHPWRTMPYNGMTPHISGTTLTAQARYAAGTREILECFFEGRPIRDEYLI 367 (393)
T ss_dssp TSEEEEEESCCSSSSCCTTCGGGTSTTBCCCCSCTTCSHHHHHHHHHHHHHHHHHHHHTCCCCGGGEE
T ss_pred CCeeEEEEEecCCCCCCCCChhHcCCCEEECCCCCcCcHHHHHHHHHHHHHHHHHHHcCCCCcceeEe
Confidence 99999999999999998999999999999999999999999999999999999999999999887763
|
| >1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-61 Score=510.38 Aligned_cols=315 Identities=29% Similarity=0.480 Sum_probs=279.2
Q ss_pred cCCCCeEEEeCCCC-HhHHHHhhcCCcEEEecCCCHhHHHhhc-CCCeEEEEcCCCCCCHHHHHhcCCcceeEEeccccc
Q 006864 87 VTPKPTILVSEKLG-EAGLAILRSFGNVECLYDLSPEALCEKI-SQCDALIVRSGTKVTRSVFEAANGKLKVVGRAGVGI 164 (628)
Q Consensus 87 ~~~~~~vlv~~~l~-~~~~~~l~~~~~v~~~~~~~~~el~~~~-~~~d~liv~~~~~v~~~~l~~~~~~Lk~I~~~g~G~ 164 (628)
.+.||+|++.+... +..++.++...++......+.+|+.+.+ .++|+++++..+++++++++++ ++||+|+++|+||
T Consensus 18 ~~~kp~i~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~Lk~I~~~~~G~ 96 (347)
T 1mx3_A 18 GSHMPLVALLDGRDCTVEMPILKDVATVAFCDAQSTQEIHEKVLNEAVGALMYHTITLTREDLEKF-KALRIIVRIGSGF 96 (347)
T ss_dssp ---CCEEEESSCSCCTTTHHHHTTTCEEEECCCSSGGGSCHHHHHHEEEEEECSSSCBCHHHHTTC-SSCCEEEESSSCC
T ss_pred CCCCCEEEEEcCCcchhhHHHhhccceEEecCCCCHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhC-CCCCEEEEccccc
Confidence 35589999887432 2236777776677665556677777764 7899988887778999999988 5999999999999
Q ss_pred CcccHhHHHhcCceEEcCCCCChhhHHHHHHHHHHHHHHchhHHHHHHHcCcccccc------cce-eeecCCeEEEEec
Q 006864 165 DNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSK------YVG-VSLVGKTLAVMGF 237 (628)
Q Consensus 165 D~iDl~aa~~~GI~V~n~p~~~~~avAE~~l~l~L~~~R~i~~~~~~~~~g~W~~~~------~~g-~~l~GktiGIIGl 237 (628)
||||+++|+++||.|+|+||+++.+||||++++||+++|++..+++.+++|.|.... ..| .+++|+|+||||+
T Consensus 97 d~id~~~~~~~gI~V~n~~~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~~~~l~g~tvGIIG~ 176 (347)
T 1mx3_A 97 DNIDIKSAGDLGIAVCNVPAASVEETADSTLCHILNLYRRATWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGL 176 (347)
T ss_dssp TTBCHHHHHHTTCEEECCCSTTHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCCCSHHHHHHHTTTCCCCTTCEEEEECC
T ss_pred CcccHHHHHhCCceEEECCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCcccccccccccccCccCCCCCEEEEEeE
Confidence 999999999999999999999999999999999999999999999999999996421 113 6899999999999
Q ss_pred ChhHHHHHHHHHcCCCEEEEECCCCChhHHHHcCCccc-CHHHHhccCCEEEEcCCCCccccccccHHHHhcCCCCcEEE
Q 006864 238 GKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELV-SFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIV 316 (628)
Q Consensus 238 G~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~-sl~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailI 316 (628)
|+||+.+|++|++|||+|++||++.....+...|+..+ ++++++++||+|++|+|++++|+++++++.|++||+|++||
T Consensus 177 G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailI 256 (347)
T 1mx3_A 177 GRVGQAVALRAKAFGFNVLFYDPYLSDGVERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLV 256 (347)
T ss_dssp SHHHHHHHHHHHTTTCEEEEECTTSCTTHHHHHTCEECSSHHHHHHHCSEEEECCCCCTTCTTSBSHHHHTTSCTTEEEE
T ss_pred CHHHHHHHHHHHHCCCEEEEECCCcchhhHhhcCCeecCCHHHHHhcCCEEEEcCCCCHHHHHHhHHHHHhcCCCCCEEE
Confidence 99999999999999999999999875545566777655 89999999999999999999999999999999999999999
Q ss_pred EcCCCchhcHHHHHHHHhCCCeeEEEeeccCCCCCC-CCCccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCC
Q 006864 317 NVARGGVIDEEALVRALDSGVVAQAALDVFTEEPPA-KDSKLVQHENVTVTPHLGASTKEAQEGVAIEIAEAVVGALRGE 395 (628)
Q Consensus 317 N~aRg~~vde~aL~~aL~~g~i~ga~lDV~~~EP~~-~~~~L~~~~nvilTPHig~~T~ea~~~~~~~~~~~i~~~l~g~ 395 (628)
|++||+++|+++|+++|++|+|+||++|||+.||++ .++||+.+||+++|||++++|+++++++...+++|+.+|++|+
T Consensus 257 N~arg~~vd~~aL~~aL~~g~i~gA~lDV~~~EP~~~~~~~L~~~~nvi~tPHia~~t~~~~~~~~~~~~~ni~~~~~g~ 336 (347)
T 1mx3_A 257 NTARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFSQGPLKDAPNLICTPHAAWYSEQASIEMREEAAREIRRAITGR 336 (347)
T ss_dssp ECSCTTSBCHHHHHHHHHHTSEEEEEESCCSSSSCCTTSSTTTTCSSEEECSSCTTCCHHHHHHHHHHHHHHHHHHHHSC
T ss_pred ECCCChHHhHHHHHHHHHhCCCcEEEEeecccCCCCCCCchHHhCCCEEEEchHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 999999999999999999999999999999999986 4789999999999999999999999999999999999999998
Q ss_pred CCC---Cccc
Q 006864 396 LSA---TAIN 402 (628)
Q Consensus 396 ~~~---~~vn 402 (628)
.+. |+||
T Consensus 337 ~~~~l~~~v~ 346 (347)
T 1mx3_A 337 IPDSLKNCVN 346 (347)
T ss_dssp TTTTCSSBCC
T ss_pred CCcccCCCCC
Confidence 765 5554
|
| >2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.9e-61 Score=507.35 Aligned_cols=312 Identities=31% Similarity=0.502 Sum_probs=289.1
Q ss_pred CCeEEEeCCCCHhHHHHhhcCCcEEEecCCCHhHHHhhcCCCeEEEEcCCCCCCHHHHHhcCCcceeEEecccccCcccH
Q 006864 90 KPTILVSEKLGEAGLAILRSFGNVECLYDLSPEALCEKISQCDALIVRSGTKVTRSVFEAANGKLKVVGRAGVGIDNVDL 169 (628)
Q Consensus 90 ~~~vlv~~~l~~~~~~~l~~~~~v~~~~~~~~~el~~~~~~~d~liv~~~~~v~~~~l~~~~~~Lk~I~~~g~G~D~iDl 169 (628)
|+|||+++.+.++.++.|++.+++++....+.+++.+.++++|++++++.+++++++++++ |+||+|++.|+|+||||+
T Consensus 2 ~~~il~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~l~~~-~~Lk~I~~~~~G~d~id~ 80 (333)
T 2d0i_A 2 RPKVGVLLKMKREALEELKKYADVEIILYPSGEELKGVIGRFDGIIVSPTTKITREVLENA-ERLKVISCHSAGYDNIDL 80 (333)
T ss_dssp CSEEEECSCCCHHHHHHHHTTSEEEECCSCCHHHHHHHGGGCSEEEECTTSCBCHHHHTTC-TTCCEEEESSSCCTTBCH
T ss_pred CcEEEEECCCCHHHHHHHHhcCCEEEeCCCCHHHHHHHhcCCEEEEECCCCCCCHHHHhhC-CCceEEEECCcccccccH
Confidence 5799999999999999998876766543357888999999999999888788999999988 599999999999999999
Q ss_pred hHHHhcCceEEcCCCCChhhHHHHHHHHHHHHHHchhHHHHHHHcCccccc--ccce----eeecCCeEEEEecChhHHH
Q 006864 170 QAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRS--KYVG----VSLVGKTLAVMGFGKVGSE 243 (628)
Q Consensus 170 ~aa~~~GI~V~n~p~~~~~avAE~~l~l~L~~~R~i~~~~~~~~~g~W~~~--~~~g----~~l~GktiGIIGlG~IG~~ 243 (628)
++|+++||.|+|+||+++.+||||++++||+++|+++++++.+|+|.|.+. .+.| .++.|++|||||+|.||+.
T Consensus 81 ~~~~~~gi~v~n~~~~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~~~l~g~~vgIIG~G~iG~~ 160 (333)
T 2d0i_A 81 EEATKRGIYVTKVSGLLSEAVAEFTVGLIINLMRKIHYADKFIRRGEWESHAKIWTGFKRIESLYGKKVGILGMGAIGKA 160 (333)
T ss_dssp HHHHHTTCEEECCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCCCHHHHHTTSCCCCCSTTCEEEEECCSHHHHH
T ss_pred HHHHhCCcEEEeCCCcChHHHHHHHHHHHHHHHhHHHHHHHHHHcCCCCcCcccccCCcccCCCCcCEEEEEccCHHHHH
Confidence 999999999999999999999999999999999999999999999999641 1346 7999999999999999999
Q ss_pred HHHHHHcCCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEcCCCCccccccccHHHHhcCCCCcEEEEcCCCch
Q 006864 244 VARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGV 323 (628)
Q Consensus 244 vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~sl~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~~ 323 (628)
+|++++++||+|++||++...+.+...|+...++++++++||+|++|+|++++|+++++++.++.||+| +|||++||.+
T Consensus 161 vA~~l~~~G~~V~~~d~~~~~~~~~~~g~~~~~l~e~l~~aDiVil~vp~~~~t~~~i~~~~~~~mk~g-ilin~srg~~ 239 (333)
T 2d0i_A 161 IARRLIPFGVKLYYWSRHRKVNVEKELKARYMDIDELLEKSDIVILALPLTRDTYHIINEERVKKLEGK-YLVNIGRGAL 239 (333)
T ss_dssp HHHHHGGGTCEEEEECSSCCHHHHHHHTEEECCHHHHHHHCSEEEECCCCCTTTTTSBCHHHHHHTBTC-EEEECSCGGG
T ss_pred HHHHHHHCCCEEEEECCCcchhhhhhcCceecCHHHHHhhCCEEEEcCCCChHHHHHhCHHHHhhCCCC-EEEECCCCcc
Confidence 999999999999999998765555566777779999999999999999999999999999999999999 9999999999
Q ss_pred hcHHHHHHHHhCCCeeEEEeeccCCCCCCCCCccccCC-cEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCccc
Q 006864 324 IDEEALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHE-NVTVTPHLGASTKEAQEGVAIEIAEAVVGALRGELSATAIN 402 (628)
Q Consensus 324 vde~aL~~aL~~g~i~ga~lDV~~~EP~~~~~~L~~~~-nvilTPHig~~T~ea~~~~~~~~~~~i~~~l~g~~~~~~vn 402 (628)
+|+++|+++|++|+++||++|||+.||++ ++|||++| |||+|||+++.|.|++++++..+++|+.+|++|+.+.+.||
T Consensus 240 vd~~aL~~aL~~~~i~gaglDv~~~EP~~-~~~L~~~~~nviltPh~~~~t~~~~~~~~~~~~~n~~~~~~g~~~~~~v~ 318 (333)
T 2d0i_A 240 VDEKAVTEAIKQGKLKGYATDVFEKEPVR-EHELFKYEWETVLTPHYAGLALEAQEDVGFRAVENLLKVLRGEVPEDLVN 318 (333)
T ss_dssp BCHHHHHHHHHTTCBCEEEESCCSSSSCS-CCGGGGCTTTEEECCSCTTCCHHHHHHHHHHHHHHHHHHHTTCCCTTBSC
T ss_pred cCHHHHHHHHHcCCceEEEecCCCCCCCC-CchHHcCCCCEEEcCccCCCcHHHHHHHHHHHHHHHHHHHcCCCCcCccC
Confidence 99999999999999999999999999987 89999999 99999999999999999999999999999999999999998
Q ss_pred CC
Q 006864 403 AP 404 (628)
Q Consensus 403 ~p 404 (628)
..
T Consensus 319 ~~ 320 (333)
T 2d0i_A 319 KE 320 (333)
T ss_dssp TT
T ss_pred HH
Confidence 53
|
| >2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-60 Score=501.22 Aligned_cols=311 Identities=35% Similarity=0.604 Sum_probs=288.4
Q ss_pred CCeEEEeCCCCHhHHHHhhcCCcEEEecC---CCHhHHHhhcCCCeEEEEcCCCCCCHHHHHhcCCcceeEEecccccCc
Q 006864 90 KPTILVSEKLGEAGLAILRSFGNVECLYD---LSPEALCEKISQCDALIVRSGTKVTRSVFEAANGKLKVVGRAGVGIDN 166 (628)
Q Consensus 90 ~~~vlv~~~l~~~~~~~l~~~~~v~~~~~---~~~~el~~~~~~~d~liv~~~~~v~~~~l~~~~~~Lk~I~~~g~G~D~ 166 (628)
|++||+++.+.+..++.|++.+++.+... .+.+++.+.++++|++++++.+++++++++++ |+||||++.|+||||
T Consensus 2 ~~~il~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~~-~~Lk~I~~~~~G~d~ 80 (334)
T 2dbq_A 2 KPKVFITREIPEVGIKMLEDEFEVEVWGDEKEIPREILLKKVKEVDALVTMLSERIDKEVFENA-PKLRIVANYAVGYDN 80 (334)
T ss_dssp CCEEEESSCCCHHHHHHHHTTSEEEECCCSSCCCHHHHHHHTTSCSEEEECTTSCBCHHHHHTC-TTCCEEEESSSCCTT
T ss_pred CcEEEEecCCCHHHHHHHHhcCCEEEecCCCCCCHHHHHHHhcCcEEEEEcCCCCCCHHHHhhC-CCceEEEECCccccc
Confidence 57899999999988998987667765432 46788999999999999987778999999988 599999999999999
Q ss_pred ccHhHHHhcCceEEcCCCCChhhHHHHHHHHHHHHHHchhHHHHHHHcCccc----c---cccceeeecCCeEEEEecCh
Q 006864 167 VDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWL----R---SKYVGVSLVGKTLAVMGFGK 239 (628)
Q Consensus 167 iDl~aa~~~GI~V~n~p~~~~~avAE~~l~l~L~~~R~i~~~~~~~~~g~W~----~---~~~~g~~l~GktiGIIGlG~ 239 (628)
||+++|+++||.|+|+||+++.+||||++++||++.|+++++++.+++|.|. + ..+.|.++.|++|||||+|.
T Consensus 81 id~~~~~~~gi~v~n~~~~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~l~g~~vgIIG~G~ 160 (334)
T 2dbq_A 81 IDIEEATKRGIYVTNTPDVLTDATADLAFALLLATARHVVKGDRFVRSGEWKKRGVAWHPKWFLGYDVYGKTIGIIGLGR 160 (334)
T ss_dssp BCHHHHHHTTCEEECCCSTTHHHHHHHHHHHHHHHHHTHHHHHHHHHTSHHHHTTCCCCTTTTCCCCCTTCEEEEECCSH
T ss_pred ccHHHHHhCCCEEEeCCCcCHHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCcccccccccccccccCCCCCEEEEEccCH
Confidence 9999999999999999999999999999999999999999999999999996 2 12347899999999999999
Q ss_pred hHHHHHHHHHcCCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEcCCCCccccccccHHHHhcCCCCcEEEEcC
Q 006864 240 VGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVA 319 (628)
Q Consensus 240 IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~sl~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~a 319 (628)
||+.+|++|+++||+|++||++...+.+...|+...++++++++||+|++|+|++++|+++++++.++.||+|++|||++
T Consensus 161 iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~g~~~~~l~~~l~~aDvVil~vp~~~~t~~~i~~~~~~~mk~~ailIn~s 240 (334)
T 2dbq_A 161 IGQAIAKRAKGFNMRILYYSRTRKEEVERELNAEFKPLEDLLRESDFVVLAVPLTRETYHLINEERLKLMKKTAILINIA 240 (334)
T ss_dssp HHHHHHHHHHHTTCEEEEECSSCCHHHHHHHCCEECCHHHHHHHCSEEEECCCCCTTTTTCBCHHHHHHSCTTCEEEECS
T ss_pred HHHHHHHHHHhCCCEEEEECCCcchhhHhhcCcccCCHHHHHhhCCEEEECCCCChHHHHhhCHHHHhcCCCCcEEEECC
Confidence 99999999999999999999987655455667777799999999999999999999999999999999999999999999
Q ss_pred CCchhcHHHHHHHHhCCCeeEEEeeccCCCCCCCCCccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCC
Q 006864 320 RGGVIDEEALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKEAQEGVAIEIAEAVVGALRGELSAT 399 (628)
Q Consensus 320 Rg~~vde~aL~~aL~~g~i~ga~lDV~~~EP~~~~~~L~~~~nvilTPHig~~T~ea~~~~~~~~~~~i~~~l~g~~~~~ 399 (628)
||.++|+++|.++|++|+|+||++|||+.|| +.++|||.+||||+|||+|+.|.+++++++..+++|+.+|++|+.+.+
T Consensus 241 rg~~v~~~aL~~aL~~~~i~ga~lDv~~~EP-~~~~~L~~~~~vi~tPh~~~~t~~~~~~~~~~~~~n~~~~~~g~~~~~ 319 (334)
T 2dbq_A 241 RGKVVDTNALVKALKEGWIAGAGLDVFEEEP-YYNEELFKLDNVVLTPHIGSASFGAREGMAELVAKNLIAFKRGEIPPT 319 (334)
T ss_dssp CGGGBCHHHHHHHHHHTSSSEEEESCCSSSS-CCCHHHHHCTTEEECSSCTTCSHHHHHHHHHHHHHHHHHHHTTCCCTT
T ss_pred CCcccCHHHHHHHHHhCCeeEEEecCCCCCC-CCCchhhcCCCEEECCccCCCcHHHHHHHHHHHHHHHHHHHcCCCCcc
Confidence 9999999999999999999999999999999 678999999999999999999999999999999999999999999999
Q ss_pred ccc
Q 006864 400 AIN 402 (628)
Q Consensus 400 ~vn 402 (628)
.||
T Consensus 320 ~v~ 322 (334)
T 2dbq_A 320 LVN 322 (334)
T ss_dssp BSC
T ss_pred ccC
Confidence 998
|
| >2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-60 Score=500.66 Aligned_cols=318 Identities=27% Similarity=0.435 Sum_probs=289.2
Q ss_pred ccCCCCeEEEeCCCCHhHHHHhhcC--CcEEEec---CCCHhHHHhhcCCCeEEEEcCCCCCCHHHHHhcCCcceeEEec
Q 006864 86 AVTPKPTILVSEKLGEAGLAILRSF--GNVECLY---DLSPEALCEKISQCDALIVRSGTKVTRSVFEAANGKLKVVGRA 160 (628)
Q Consensus 86 ~~~~~~~vlv~~~l~~~~~~~l~~~--~~v~~~~---~~~~~el~~~~~~~d~liv~~~~~v~~~~l~~~~~~Lk~I~~~ 160 (628)
.++.|++||+++.+.+..++.|++. .++.... ..+.+++.+.++++|++++++.++++++++++++|+||||++.
T Consensus 4 ~~~~~~~il~~~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~~~~~Lk~I~~~ 83 (330)
T 2gcg_A 4 RPVRLMKVFVTRRIPAEGRVALARAADCEVEQWDSDEPIPAKELERGVAGAHGLLCLLSDHVDKRILDAAGANLKVISTM 83 (330)
T ss_dssp ---CCEEEEESSCCCHHHHHHHHHCTTEEEEECCSSSCCCHHHHHHHHTTCSEEEECTTSCBCHHHHHHHCTTCCEEEES
T ss_pred CCCCCCEEEEECCCCHHHHHHHHhcCCceEEEecCCCCCCHHHHHHHhcCCeEEEECCCCCCCHHHHHhcCCCceEEEEC
Confidence 3445789999999998889988876 4555432 2467899999999999999877789999999873599999999
Q ss_pred ccccCcccHhHHHhcCceEEcCCCCChhhHHHHHHHHHHHHHHchhHHHHHHHcCccccc---ccceeeecCCeEEEEec
Q 006864 161 GVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRS---KYVGVSLVGKTLAVMGF 237 (628)
Q Consensus 161 g~G~D~iDl~aa~~~GI~V~n~p~~~~~avAE~~l~l~L~~~R~i~~~~~~~~~g~W~~~---~~~g~~l~GktiGIIGl 237 (628)
|+||||||+++|+++||.|+|+||+++.+||||++++||++.|+++++++.+++|.|.+. .+.|.++.|++|||||+
T Consensus 84 ~~G~d~id~~~~~~~gi~v~n~~~~~~~~vAe~~~~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~l~g~~vgIIG~ 163 (330)
T 2gcg_A 84 SVGIDHLALDEIKKRGIRVGYTPDVLTDTTAELAVSLLLTTCRRLPEAIEEVKNGGWTSWKPLWLCGYGLTQSTVGIIGL 163 (330)
T ss_dssp SSCCTTBCHHHHHHTTCEEECCCSTTHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCSCCTTSSCBCCCTTCEEEEECC
T ss_pred CcccccccHHHHHhCCceEEeCCCCChHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCcccCcccccCcCCCCCEEEEECc
Confidence 999999999999999999999999999999999999999999999999999999999742 24578999999999999
Q ss_pred ChhHHHHHHHHHcCCCEEEEECCCC-ChhHHHHcCCcccCHHHHhccCCEEEEcCCCCccccccccHHHHhcCCCCcEEE
Q 006864 238 GKVGSEVARRAKGLGMNVIAHDPYA-PADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIV 316 (628)
Q Consensus 238 G~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~g~~~~sl~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailI 316 (628)
|.||+.+|++++++||+|++||++. ..+.....|+..+++++++++||+|++|+|.+++|+++++++.++.||+|++||
T Consensus 164 G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~l~e~l~~aDvVi~~vp~~~~t~~~i~~~~~~~mk~gailI 243 (330)
T 2gcg_A 164 GRIGQAIARRLKPFGVQRFLYTGRQPRPEEAAEFQAEFVSTPELAAQSDFIVVACSLTPATEGLCNKDFFQKMKETAVFI 243 (330)
T ss_dssp SHHHHHHHHHHGGGTCCEEEEESSSCCHHHHHTTTCEECCHHHHHHHCSEEEECCCCCTTTTTCBSHHHHHHSCTTCEEE
T ss_pred CHHHHHHHHHHHHCCCEEEEECCCCcchhHHHhcCceeCCHHHHHhhCCEEEEeCCCChHHHHhhCHHHHhcCCCCcEEE
Confidence 9999999999999999999999876 344455567766699999999999999999999999999999999999999999
Q ss_pred EcCCCchhcHHHHHHHHhCCCeeEEEeeccCCCCCCCCCccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCC
Q 006864 317 NVARGGVIDEEALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKEAQEGVAIEIAEAVVGALRGEL 396 (628)
Q Consensus 317 N~aRg~~vde~aL~~aL~~g~i~ga~lDV~~~EP~~~~~~L~~~~nvilTPHig~~T~ea~~~~~~~~~~~i~~~l~g~~ 396 (628)
|++||+++|+++|.++|++|++.||++|||+.||++.++|||+++||++|||+|+.|.|++++++..+++|+.+|++|++
T Consensus 244 n~srg~~v~~~aL~~aL~~~~i~ga~lDv~~~epl~~~~~l~~~~nvi~tPh~~~~t~~~~~~~~~~~~~n~~~~~~g~~ 323 (330)
T 2gcg_A 244 NISRGDVVNQDDLYQALASGKIAAAGLDVTSPEPLPTNHPLLTLKNCVILPHIGSATHRTRNTMSLLAANNLLAGLRGEP 323 (330)
T ss_dssp ECSCGGGBCHHHHHHHHHHTSSSEEEESCCSSSSCCTTCGGGGCTTEEECCSCTTCBHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred ECCCCcccCHHHHHHHHHcCCccEEEeCCCCCCCCCCCChhhcCCCEEECCCCCCCcHHHHHHHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999899999999999999999999999999999999999999999999
Q ss_pred CCCcccC
Q 006864 397 SATAINA 403 (628)
Q Consensus 397 ~~~~vn~ 403 (628)
+.+.||.
T Consensus 324 ~~~~v~~ 330 (330)
T 2gcg_A 324 MPSELKL 330 (330)
T ss_dssp CTTEECC
T ss_pred CCCCCCC
Confidence 9998874
|
| >3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-60 Score=501.17 Aligned_cols=299 Identities=20% Similarity=0.238 Sum_probs=258.8
Q ss_pred CeEEEeCCCC--HhHHHHhhcC-CcEEEecCCCHhHHHhhcCCCeEEEEcCCCCCCHHHHHhcCCcceeEEecccccCcc
Q 006864 91 PTILVSEKLG--EAGLAILRSF-GNVECLYDLSPEALCEKISQCDALIVRSGTKVTRSVFEAANGKLKVVGRAGVGIDNV 167 (628)
Q Consensus 91 ~~vlv~~~l~--~~~~~~l~~~-~~v~~~~~~~~~el~~~~~~~d~liv~~~~~v~~~~l~~~~~~Lk~I~~~g~G~D~i 167 (628)
+||++..+.. +...+.|++. .++++... +.+ ...++|+++++. ++++++++ |+||||++.|+|||||
T Consensus 4 mkil~~~~~~~~~~~~~~l~~~~p~~~~~~~-~~~----~~~~ad~~i~~~---~~~~~l~~--~~Lk~I~~~~aG~d~i 73 (315)
T 3pp8_A 4 MEIIFYHPTFNAAWWVNALEKALPHARVREW-KVG----DNNPADYALVWQ---PPVEMLAG--RRLKAVFVLGAGVDAI 73 (315)
T ss_dssp EEEEEECSSSCHHHHHHHHHHHSTTEEEEEC-CTT----CCSCCSEEEESS---CCHHHHTT--CCCSEEEESSSCCHHH
T ss_pred eEEEEEcCCCchHHHHHHHHHHCCCCEEEec-CCC----CccCcEEEEECC---CCHHHhCC--CCceEEEECCEecccc
Confidence 6788877654 4455666653 46655432 111 356999999864 57999987 5999999999999999
Q ss_pred -c-HhH---HHhcCceEEcCCCCC-hhhHHHHHHHHHHHHHHchhHHHHHHHcCcccccccceeeecCCeEEEEecChhH
Q 006864 168 -D-LQA---ATEFGCLVVNAPIAN-TVAAAEHGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGKTLAVMGFGKVG 241 (628)
Q Consensus 168 -D-l~a---a~~~GI~V~n~p~~~-~~avAE~~l~l~L~~~R~i~~~~~~~~~g~W~~~~~~g~~l~GktiGIIGlG~IG 241 (628)
| +++ |.++||.|+|+|+++ +.+||||++++||++.|+++++++.+++|+|.+. .+.+++|||+||||+|+||
T Consensus 74 ~d~~~a~~~~~~~gi~v~~~~~~~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~--~~~~l~g~tvGIiG~G~IG 151 (315)
T 3pp8_A 74 LSKLNAHPEMLDASIPLFRLEDTGMGLQMQEYAVSQVLHWFRRFDDYQALKNQALWKPL--PEYTREEFSVGIMGAGVLG 151 (315)
T ss_dssp HHHHHHCTTSSCTTSCEEEC--CCCHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCC--CCCCSTTCCEEEECCSHHH
T ss_pred cchhhhhhhhhcCCCEEEEcCCCCccHHHHHHHHHHHHHHHhCChHHHHHHHhcccCCC--CCCCcCCCEEEEEeeCHHH
Confidence 7 987 789999999999875 8999999999999999999999999999999864 5789999999999999999
Q ss_pred HHHHHHHHcCCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEcCCCCccccccccHHHHhcCCCCcEEEEcCCC
Q 006864 242 SEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARG 321 (628)
Q Consensus 242 ~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~sl~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg 321 (628)
+.+|++|++|||+|++||++..............++++++++||+|++|+|++++|+++|+++.|++||+|++|||++||
T Consensus 152 ~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG 231 (315)
T 3pp8_A 152 AKVAESLQAWGFPLRCWSRSRKSWPGVESYVGREELRAFLNQTRVLINLLPNTAQTVGIINSELLDQLPDGAYVLNLARG 231 (315)
T ss_dssp HHHHHHHHTTTCCEEEEESSCCCCTTCEEEESHHHHHHHHHTCSEEEECCCCCGGGTTCBSHHHHTTSCTTEEEEECSCG
T ss_pred HHHHHHHHHCCCEEEEEcCCchhhhhhhhhcccCCHHHHHhhCCEEEEecCCchhhhhhccHHHHhhCCCCCEEEECCCC
Confidence 99999999999999999987532110000011247999999999999999999999999999999999999999999999
Q ss_pred chhcHHHHHHHHhCCCeeEEEeeccCCCCCCCCCccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCcc
Q 006864 322 GVIDEEALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKEAQEGVAIEIAEAVVGALRGELSATAI 401 (628)
Q Consensus 322 ~~vde~aL~~aL~~g~i~ga~lDV~~~EP~~~~~~L~~~~nvilTPHig~~T~ea~~~~~~~~~~~i~~~l~g~~~~~~v 401 (628)
+++|++||+++|++|+|+||+||||++||++.++|||++|||++|||+|++|.+ +++...+++||.+|++|+++.|.|
T Consensus 232 ~~vd~~aL~~aL~~g~i~gA~lDV~~~EPl~~~~pL~~~~nvilTPHia~~t~~--~~~~~~~~~ni~~~~~G~~~~~~V 309 (315)
T 3pp8_A 232 VHVQEADLLAALDSGKLKGAMLDVFSQEPLPQESPLWRHPRVAMTPHIAAVTRP--AEAIDYISRTITQLEKGEPVTGQV 309 (315)
T ss_dssp GGBCHHHHHHHHHHTSEEEEEESCCSSSSCCTTCGGGGCTTEEECSSCSSCCCH--HHHHHHHHHHHHHHHHTCCCCCBC
T ss_pred hhhhHHHHHHHHHhCCccEEEcCCCCCCCCCCCChhhcCCCEEECCCCCcccHH--HHHHHHHHHHHHHHHcCCCCCceE
Confidence 999999999999999999999999999999999999999999999999999986 578999999999999999999999
Q ss_pred cC
Q 006864 402 NA 403 (628)
Q Consensus 402 n~ 403 (628)
|.
T Consensus 310 ~~ 311 (315)
T 3pp8_A 310 DR 311 (315)
T ss_dssp CC
T ss_pred Cc
Confidence 85
|
| >1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-59 Score=487.26 Aligned_cols=292 Identities=22% Similarity=0.270 Sum_probs=265.7
Q ss_pred eEEEeCCCCHhHHHHhhcCCcEEEecCCCHhHHHhhcCCCeEEEEcCCCCCCHHHHHhcCCcceeEEecccccCcccHhH
Q 006864 92 TILVSEKLGEAGLAILRSFGNVECLYDLSPEALCEKISQCDALIVRSGTKVTRSVFEAANGKLKVVGRAGVGIDNVDLQA 171 (628)
Q Consensus 92 ~vlv~~~l~~~~~~~l~~~~~v~~~~~~~~~el~~~~~~~d~liv~~~~~v~~~~l~~~~~~Lk~I~~~g~G~D~iDl~a 171 (628)
|||++++++++.++.|++.+ .++. .+.+.++|+++++. .+.++++++ |+||||+++|+||||||+++
T Consensus 2 ~il~~~~~~~~~~~~l~~~~-~~v~--------~~~~~~~d~~i~~~---~~~~~l~~~-~~Lk~I~~~~~G~d~id~~~ 68 (303)
T 1qp8_A 2 ELYVNFELPPEAEEELRKYF-KIVR--------GGDLGNVEAALVSR---ITAEELAKM-PRLKFIQVVTAGLDHLPWES 68 (303)
T ss_dssp EEECCSCCCHHHHHHHHTTC-EEEC--------SSCCTTBCCCCBSC---CCHHHHHHC-TTCCCEEBSSSCCTTSCCTT
T ss_pred EEEEccCCCHHHHHHHHhcC-Cccc--------hhhhCCCEEEEECC---CCHHHHhhC-CCCcEEEECCcCcccccHHH
Confidence 78999999999999888752 2221 25678999999864 457999988 59999999999999999998
Q ss_pred HHhcCceEEcCCCCChhhHHHHHHHHHHHHHHchhHHHHHHHcCcccccccceeeecCCeEEEEecChhHHHHHHHHHcC
Q 006864 172 ATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGL 251 (628)
Q Consensus 172 a~~~GI~V~n~p~~~~~avAE~~l~l~L~~~R~i~~~~~~~~~g~W~~~~~~g~~l~GktiGIIGlG~IG~~vA~~l~~~ 251 (628)
+ ++||.|+|+||+++.+||||++++||+++|+++++++.+++|.|.+. ..+.++.|||+||||+|+||+.+|++|++|
T Consensus 69 ~-~~gi~v~~~~~~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~~-~~~~~l~g~~vgIIG~G~IG~~~A~~l~~~ 146 (303)
T 1qp8_A 69 I-PPHVTVAGNAGSNADAVAEFALALLLAPYKRIIQYGEKMKRGDYGRD-VEIPLIQGEKVAVLGLGEIGTRVGKILAAL 146 (303)
T ss_dssp S-CTTSCEECCCSSSHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCC-SCCCCCTTCEEEEESCSTHHHHHHHHHHHT
T ss_pred H-hcCCEEEECCCCCchHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCCC-CCCCCCCCCEEEEEccCHHHHHHHHHHHHC
Confidence 5 79999999999999999999999999999999999999999999753 234589999999999999999999999999
Q ss_pred CCEEEEECCCCChhHHHHcCC-cccCHHHHhccCCEEEEcCCCCccccccccHHHHhcCCCCcEEEEcCCCchhcHHHHH
Q 006864 252 GMNVIAHDPYAPADKARAVGV-ELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALV 330 (628)
Q Consensus 252 G~~V~~~d~~~~~~~a~~~g~-~~~sl~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~~vde~aL~ 330 (628)
||+|++||++.. +. +. ...++++++++||+|++|+|++++|+++++++.|++||+|++|||++||+++|+++|+
T Consensus 147 G~~V~~~dr~~~-~~----~~~~~~~l~ell~~aDvV~l~~P~~~~t~~~i~~~~l~~mk~gailin~srg~~vd~~aL~ 221 (303)
T 1qp8_A 147 GAQVRGFSRTPK-EG----PWRFTNSLEEALREARAAVCALPLNKHTRGLVKYQHLALMAEDAVFVNVGRAEVLDRDGVL 221 (303)
T ss_dssp TCEEEEECSSCC-CS----SSCCBSCSHHHHTTCSEEEECCCCSTTTTTCBCHHHHTTSCTTCEEEECSCGGGBCHHHHH
T ss_pred CCEEEEECCCcc-cc----CcccCCCHHHHHhhCCEEEEeCcCchHHHHHhCHHHHhhCCCCCEEEECCCCcccCHHHHH
Confidence 999999998765 21 33 3458999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCeeEEEeecc-CCCCCCCCCccccCCcEEEcCCCCCC--cHHHHHHHHHHHHHHHHHHHcCCCCCCcccC
Q 006864 331 RALDSGVVAQAALDVF-TEEPPAKDSKLVQHENVTVTPHLGAS--TKEAQEGVAIEIAEAVVGALRGELSATAINA 403 (628)
Q Consensus 331 ~aL~~g~i~ga~lDV~-~~EP~~~~~~L~~~~nvilTPHig~~--T~ea~~~~~~~~~~~i~~~l~g~~~~~~vn~ 403 (628)
++|++|+|+||++||| ++||+++++|||++||+++|||++++ |.|++++++..+++|+.+|++|+++.+.||.
T Consensus 222 ~aL~~g~i~gA~lDv~~~~ep~~~~~~L~~~~nviltPH~~~~~~t~e~~~~~~~~~~~nl~~~~~g~~~~~~v~~ 297 (303)
T 1qp8_A 222 RILKERPQFIFASDVWWGRNDFAKDAEFFSLPNVVATPWVAGGYGNERVWRQMVMEAVRNLITYATGGRPRNIAKR 297 (303)
T ss_dssp HHHHHCTTCEEEESCCTTTTCCGGGHHHHTSTTEEECCSCSSSSSCHHHHHHHHHHHHHHHHHHHTTSCCSCBCCG
T ss_pred HHHHhCCceEEEeccCCCCCCCCCCChhhcCCCEEECCCcCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCceeCH
Confidence 9999999999999999 88999889999999999999999998 9999999999999999999999999999884
|
| >3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-57 Score=486.17 Aligned_cols=281 Identities=28% Similarity=0.422 Sum_probs=250.9
Q ss_pred CCCeEEEeCCCCHhHHHHhhcCCcEEEecC--CCHhHHHhhcCCCeEEEEcCCCCCCHHHHHhcCCcceeEEecccccCc
Q 006864 89 PKPTILVSEKLGEAGLAILRSFGNVECLYD--LSPEALCEKISQCDALIVRSGTKVTRSVFEAANGKLKVVGRAGVGIDN 166 (628)
Q Consensus 89 ~~~~vlv~~~l~~~~~~~l~~~~~v~~~~~--~~~~el~~~~~~~d~liv~~~~~v~~~~l~~~~~~Lk~I~~~g~G~D~ 166 (628)
.|+|||+.+.++ ...+.+++.+++.+... ++. +.++++|++++++.+++++++++ ++ +||||+++|+|+||
T Consensus 2 ~mmkIl~~~~~p-~~~~~~~~~~~v~~~~~~~~~~----~~l~~ad~li~~~~~~v~~~ll~-~~-~Lk~I~~~~~G~D~ 74 (381)
T 3oet_A 2 NAMKILVDENMP-YARELFSRLGEVKAVPGRPIPV----EELNHADALMVRSVTKVNESLLS-GT-PINFVGTATAGTDH 74 (381)
T ss_dssp CCCEEEEETTST-THHHHHTTSSEEEEECC---CH----HHHTTCSEEEECTTSCBSHHHHT-TS-CCCEEEESSSCCTT
T ss_pred CceEEEECCCCc-HHHHHHhhCCcEEEeCCCCCCH----HHHCCCEEEEECCCCCCCHHHHc-CC-CCEEEEEccccccc
Confidence 357999998875 46788888888776532 233 34789999999988899999998 43 69999999999999
Q ss_pred ccHhHHHhcCceEEcCCCCChhhHHHHHHHHHHHHHHchhHHHHHHHcCcccccccceeeecCCeEEEEecChhHHHHHH
Q 006864 167 VDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVAR 246 (628)
Q Consensus 167 iDl~aa~~~GI~V~n~p~~~~~avAE~~l~l~L~~~R~i~~~~~~~~~g~W~~~~~~g~~l~GktiGIIGlG~IG~~vA~ 246 (628)
||+++|+++||.|+|+||+|+.+||||++++||+++|+. |.+++|||+||||+|+||+.+|+
T Consensus 75 iD~~~~~~~gI~v~n~pg~~~~~VAE~~l~~lL~l~r~~------------------g~~l~gktvGIIGlG~IG~~vA~ 136 (381)
T 3oet_A 75 VDEAWLKQAGIGFSAAPGCNAIAVVEYVFSALLMLAERD------------------GFSLRDRTIGIVGVGNVGSRLQT 136 (381)
T ss_dssp BCHHHHHHTTCEEECCTTTTHHHHHHHHHHHHHHHHHHT------------------TCCGGGCEEEEECCSHHHHHHHH
T ss_pred cCHHHHHhCCEEEEECCCcCcchhHHHHHHHHHHHHHhc------------------CCccCCCEEEEEeECHHHHHHHH
Confidence 999999999999999999999999999999999999863 46899999999999999999999
Q ss_pred HHHcCCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEcCCCCcc----ccccccHHHHhcCCCCcEEEEcCCCc
Q 006864 247 RAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPT----TSKIFNDETFAKMKKGVRIVNVARGG 322 (628)
Q Consensus 247 ~l~~~G~~V~~~d~~~~~~~a~~~g~~~~sl~ell~~aDvV~l~~Plt~~----t~~li~~~~l~~mk~gailIN~aRg~ 322 (628)
+|++|||+|++|||+.. ....+....++++++++||+|++|+|++++ |+++++++.|++||+|++|||++||+
T Consensus 137 ~l~a~G~~V~~~d~~~~---~~~~~~~~~sl~ell~~aDiV~l~~Plt~~g~~~T~~li~~~~l~~mk~gailIN~aRG~ 213 (381)
T 3oet_A 137 RLEALGIRTLLCDPPRA---ARGDEGDFRTLDELVQEADVLTFHTPLYKDGPYKTLHLADETLIRRLKPGAILINACRGP 213 (381)
T ss_dssp HHHHTTCEEEEECHHHH---HTTCCSCBCCHHHHHHHCSEEEECCCCCCSSTTCCTTSBCHHHHHHSCTTEEEEECSCGG
T ss_pred HHHHCCCEEEEECCChH---HhccCcccCCHHHHHhhCCEEEEcCcCCccccccchhhcCHHHHhcCCCCcEEEECCCCc
Confidence 99999999999998531 112345677999999999999999999999 99999999999999999999999999
Q ss_pred hhcHHHHHHHHhCCCeeEEEeeccCCCCCCCCCccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCC
Q 006864 323 VIDEEALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKEAQEGVAIEIAEAVVGALRGELSAT 399 (628)
Q Consensus 323 ~vde~aL~~aL~~g~i~ga~lDV~~~EP~~~~~~L~~~~nvilTPHig~~T~ea~~~~~~~~~~~i~~~l~g~~~~~ 399 (628)
++|++||+++|++|+++||+||||++||++ +++||.++ +++|||+||+|.|++.++..++++|+.+|+++.....
T Consensus 214 vvde~aL~~aL~~g~i~gA~LDV~e~EP~~-~~~L~~~~-~i~TPHiag~t~e~~~~~~~~~~~~l~~~l~~~~~~~ 288 (381)
T 3oet_A 214 VVDNAALLARLNAGQPLSVVLDVWEGEPDL-NVALLEAV-DIGTSHIAGYTLEGKARGTTQVFEAYSAFIGREQRVA 288 (381)
T ss_dssp GBCHHHHHHHHHTTCCEEEEESCCTTTTSC-CHHHHHHS-SEECSSCTTCCHHHHHHHHHHHHHHHHHHTTCCCCCC
T ss_pred ccCHHHHHHHHHhCCCeEEEeeccccCCCC-cchhhhCC-EEECCccCcCcHHHHHHHHHHHHHHHHHHHcCCcccc
Confidence 999999999999999999999999999986 56798875 8999999999999999999999999999998865433
|
| >3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-56 Score=466.25 Aligned_cols=278 Identities=26% Similarity=0.363 Sum_probs=240.9
Q ss_pred eEEEeCCCC----HhHHHHhhcCCcEEEecCCCHhHHHhhcCCCeEEEEcCCCCCCHHHHHhcCCcceeEEecccccCcc
Q 006864 92 TILVSEKLG----EAGLAILRSFGNVECLYDLSPEALCEKISQCDALIVRSGTKVTRSVFEAANGKLKVVGRAGVGIDNV 167 (628)
Q Consensus 92 ~vlv~~~l~----~~~~~~l~~~~~v~~~~~~~~~el~~~~~~~d~liv~~~~~v~~~~l~~~~~~Lk~I~~~g~G~D~i 167 (628)
+|++..++. +.+.+.|+.+. ++. .+.++++|++|++ ..++ ++ |+||||+++|+|||||
T Consensus 2 ~~~~~~~~~~~~~~~~~~~l~~~~-~~~---------~~~~~~ad~li~~-~~~~------~~-~~Lk~I~~~~~G~d~i 63 (290)
T 3gvx_A 2 DVYVNFPADGHVREIAKTVLDGFD-LHW---------YPDYYDAEAQVIK-DRYV------LG-KRTKMIQAISAGVDHI 63 (290)
T ss_dssp CEEECSCCCHHHHHHHHHHTTTSC-EEE---------TTSCCCCSEEEES-SCCC------CC-SSCCEEEECSSCCTTS
T ss_pred ceEEecCCcchHHHHHHHHhcccc-ccc---------Ccchhhhhhhhhh-hhhh------hh-hhhHHHHHHhcCCcee
Confidence 455566654 44455555432 222 1678999999983 4443 45 6999999999999999
Q ss_pred cHhHHHhcCceEEcCCCCChhhHHHHHHHHHHHHHHchhHHHHHHHcCcccccccceeeecCCeEEEEecChhHHHHHHH
Q 006864 168 DLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARR 247 (628)
Q Consensus 168 Dl~aa~~~GI~V~n~p~~~~~avAE~~l~l~L~~~R~i~~~~~~~~~g~W~~~~~~g~~l~GktiGIIGlG~IG~~vA~~ 247 (628)
|+++|+++||.+.| ++.|+.+||||++++||++.|+++.+++.+++|+|.+.. ..+++|||+||||+|.||+.+|++
T Consensus 64 d~~~~~~~~~~~~~-~~~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~~~--~~~l~g~tvGIIGlG~IG~~vA~~ 140 (290)
T 3gvx_A 64 DVNGIPENVVLCSN-AGAYSISVAEHAFALLLAHAKNILENNELMKAGIFRQSP--TTLLYGKALGILGYGGIGRRVAHL 140 (290)
T ss_dssp CGGGSCTTSEEECC-HHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCC--CCCCTTCEEEEECCSHHHHHHHHH
T ss_pred ecCCCccceEEeec-CCcceeeHHHHHHHHHHHHHHhhhhhhhHhhhcccccCC--ceeeecchheeeccCchhHHHHHH
Confidence 99999987765555 689999999999999999999999999999999998753 378999999999999999999999
Q ss_pred HHcCCCEEEEECCCCChhHHHHcCCccc-CHHHHhccCCEEEEcCCCCccccccccHHHHhcCCCCcEEEEcCCCchhcH
Q 006864 248 AKGLGMNVIAHDPYAPADKARAVGVELV-SFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDE 326 (628)
Q Consensus 248 l~~~G~~V~~~d~~~~~~~a~~~g~~~~-sl~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~~vde 326 (628)
|++|||+|++||++..... .+..+ ++++++++||+|++|+|++++|+++++++.|+.||+|++|||++||+++|+
T Consensus 141 l~~~G~~V~~~dr~~~~~~----~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l~~mk~gailIN~aRG~~vd~ 216 (290)
T 3gvx_A 141 AKAFGMRVIAYTRSSVDQN----VDVISESPADLFRQSDFVLIAIPLTDKTRGMVNSRLLANARKNLTIVNVARADVVSK 216 (290)
T ss_dssp HHHHTCEEEEECSSCCCTT----CSEECSSHHHHHHHCSEEEECCCCCTTTTTCBSHHHHTTCCTTCEEEECSCGGGBCH
T ss_pred HHhhCcEEEEEeccccccc----cccccCChHHHhhccCeEEEEeeccccchhhhhHHHHhhhhcCceEEEeehhcccCC
Confidence 9999999999999863321 13444 899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCeeEEEeeccCCCCCCCCCccccCCcEEEcCCCC-CCcHHHHHHHHHHHHHHHHHHHcCCCC
Q 006864 327 EALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLG-ASTKEAQEGVAIEIAEAVVGALRGELS 397 (628)
Q Consensus 327 ~aL~~aL~~g~i~ga~lDV~~~EP~~~~~~L~~~~nvilTPHig-~~T~ea~~~~~~~~~~~i~~~l~g~~~ 397 (628)
++|+++|++|++.||++|||+.||+ +|||++||+++|||+| ++|.|+++++...+++||.+|++|+.-
T Consensus 217 ~aL~~aL~~g~i~ga~lDV~~~EP~---~pL~~~~nvilTPHiag~~t~e~~~~~~~~~~~ni~~~~~~~~~ 285 (290)
T 3gvx_A 217 PDMIGFLKERSDVWYLSDVWWNEPE---ITETNLRNAILSPHVAGGMSGEIMDIAIQLAFENVRNFFEGEGH 285 (290)
T ss_dssp HHHHHHHHHCTTCEEEESCCTTTTS---CCSCCCSSEEECCSCSSCBTTBCCHHHHHHHHHHHHHHTC----
T ss_pred cchhhhhhhccceEEeeccccCCcc---cchhhhhhhhcCccccCCccchHHHHHHHHHHHHHHhhhcCCCc
Confidence 9999999999999999999999997 8999999999999999 999999999999999999999999864
|
| >2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-54 Score=465.37 Aligned_cols=282 Identities=31% Similarity=0.441 Sum_probs=249.3
Q ss_pred eEEEeCCCCHhHHHHhhcCCcEEEecCCCHhHHHhhcCCCeEEEEcCCCCCCHHHHHhcCCcceeEEecccccCcccHhH
Q 006864 92 TILVSEKLGEAGLAILRSFGNVECLYDLSPEALCEKISQCDALIVRSGTKVTRSVFEAANGKLKVVGRAGVGIDNVDLQA 171 (628)
Q Consensus 92 ~vlv~~~l~~~~~~~l~~~~~v~~~~~~~~~el~~~~~~~d~liv~~~~~v~~~~l~~~~~~Lk~I~~~g~G~D~iDl~a 171 (628)
||++.+.++. ..+.+++.+++.+... .+...+.+.++|++++++.+++++++++ + ++||+|+++|+|+||||+++
T Consensus 2 kil~~~~~~~-~~~~~~~~~~v~~~~~--~~~~~~~l~~ad~li~~~~~~~~~~~l~-~-~~Lk~I~~~~~G~D~iD~~~ 76 (380)
T 2o4c_A 2 RILADENIPV-VDAFFADQGSIRRLPG--RAIDRAALAEVDVLLVRSVTEVSRAALA-G-SPVRFVGTCTIGTDHLDLDY 76 (380)
T ss_dssp EEEEETTCTT-HHHHHGGGSEEEEECG--GGCSTTTTTTCSEEEECTTSCBCHHHHT-T-SCCCEEEECSSCSTTBCHHH
T ss_pred EEEEecCchH-HHHHHHhCCcEEEecC--CcCChHHHCCcEEEEEcCCCCCCHHHhc-C-CCceEEEEcCcccchhhHHH
Confidence 7888877654 4677777677655331 1112234689999999988899999998 6 59999999999999999999
Q ss_pred HHhcCceEEcCCCCChhhHHHHHHHHHHHHHHchhHHHHHHHcCcccccccceeeecCCeEEEEecChhHHHHHHHHHcC
Q 006864 172 ATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGL 251 (628)
Q Consensus 172 a~~~GI~V~n~p~~~~~avAE~~l~l~L~~~R~i~~~~~~~~~g~W~~~~~~g~~l~GktiGIIGlG~IG~~vA~~l~~~ 251 (628)
|+++||.|+|+||+|+.+||||++++||++.|++ |.+++||||||||+|+||+.+|++|++|
T Consensus 77 ~~~~gI~v~n~pg~~~~~vAE~~l~~lL~l~r~~------------------~~~l~g~tvGIIGlG~IG~~vA~~l~~~ 138 (380)
T 2o4c_A 77 FAEAGIAWSSAPGCNARGVVDYVLGCLLAMAEVR------------------GADLAERTYGVVGAGQVGGRLVEVLRGL 138 (380)
T ss_dssp HHHHTCEEECCTTTTHHHHHHHHHHHHHHHHHHH------------------TCCGGGCEEEEECCSHHHHHHHHHHHHT
T ss_pred HHhCCCEEEeCCCcChHHHHHHHHHHHHHHHhhh------------------hcccCCCEEEEEeCCHHHHHHHHHHHHC
Confidence 9999999999999999999999999999999962 3589999999999999999999999999
Q ss_pred CCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEcCCCCcc----ccccccHHHHhcCCCCcEEEEcCCCchhcHH
Q 006864 252 GMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPT----TSKIFNDETFAKMKKGVRIVNVARGGVIDEE 327 (628)
Q Consensus 252 G~~V~~~d~~~~~~~a~~~g~~~~sl~ell~~aDvV~l~~Plt~~----t~~li~~~~l~~mk~gailIN~aRg~~vde~ 327 (628)
||+|++|||+... ...+....++++++++||+|++|+|++++ |+++++++.|++||+|++|||++||+++|++
T Consensus 139 G~~V~~~d~~~~~---~~~g~~~~~l~ell~~aDvV~l~~Plt~~g~~~T~~li~~~~l~~mk~gailIN~sRG~vvd~~ 215 (380)
T 2o4c_A 139 GWKVLVCDPPRQA---REPDGEFVSLERLLAEADVISLHTPLNRDGEHPTRHLLDEPRLAALRPGTWLVNASRGAVVDNQ 215 (380)
T ss_dssp TCEEEEECHHHHH---HSTTSCCCCHHHHHHHCSEEEECCCCCSSSSSCCTTSBCHHHHHTSCTTEEEEECSCGGGBCHH
T ss_pred CCEEEEEcCChhh---hccCcccCCHHHHHHhCCEEEEeccCccccccchhhhcCHHHHhhCCCCcEEEECCCCcccCHH
Confidence 9999999986321 12455667999999999999999999999 9999999999999999999999999999999
Q ss_pred HHHHHHhCCCeeEEEeeccCCCCCCCCCccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCcc
Q 006864 328 ALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKEAQEGVAIEIAEAVVGALRGELSATAI 401 (628)
Q Consensus 328 aL~~aL~~g~i~ga~lDV~~~EP~~~~~~L~~~~nvilTPHig~~T~ea~~~~~~~~~~~i~~~l~g~~~~~~v 401 (628)
+|+++|++|+|.||+||||++||++ +++|+. +|+++|||+|++|.|++.++...+++|+.+|++|+...+.-
T Consensus 216 aL~~aL~~g~i~~A~LDV~~~EP~~-~~~l~~-~nvi~TPHiag~t~e~~~~~~~~~~~nl~~~l~g~~~~~~~ 287 (380)
T 2o4c_A 216 ALRRLLEGGADLEVALDVWEGEPQA-DPELAA-RCLIATPHIAGYSLEGKLRGTAQIYQAYCAWRGIAERVSLQ 287 (380)
T ss_dssp HHHHHHHTTCCEEEEESCCTTTTSC-CHHHHT-TCSEECSSCTTCCHHHHHHHHHHHHHHHHHHHTCCCCCCGG
T ss_pred HHHHHHHhCCCceEEeeeeccCCCC-chhhcc-CCEEEccccCcCCHHHHHHHHHHHHHHHHHHHcCCCccchh
Confidence 9999999999999999999999974 678887 59999999999999999999999999999999998755443
|
| >1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum} SCOP: c.2.1.4 c.23.12.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-39 Score=357.79 Aligned_cols=275 Identities=17% Similarity=0.180 Sum_probs=234.6
Q ss_pred CcceeEE-ecccccCcccHhHHHhcCceEEcCCCCChhhHHHHHHHHHHHHHHchhHHHHHHHcCcccccccceeeecCC
Q 006864 152 GKLKVVG-RAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGK 230 (628)
Q Consensus 152 ~~Lk~I~-~~g~G~D~iDl~aa~~~GI~V~n~p~~~~~avAE~~l~l~L~~~R~i~~~~~~~~~g~W~~~~~~g~~l~Gk 230 (628)
++++.|+ .+++|+|++ ++|+++||.|+|+|++|. ++|| +++|++....+.++.| |.+ +.+.++.||
T Consensus 192 ~~l~gi~eet~~Gvd~l--~a~~~~Gilv~p~~~vn~-sVae-------~l~r~~~~~~~~l~~g-w~r--~~~~~l~Gk 258 (479)
T 1v8b_A 192 KKIIGVSEETTTGVLRL--KKMDKQNELLFTAINVND-AVTK-------QKYDNVYGCRHSLPDG-LMR--ATDFLISGK 258 (479)
T ss_dssp TTCCEEEECSHHHHHHH--HHHHHTTCCCSEEEECTT-SHHH-------HTTHHHHHHHHHHHHH-HHH--HHCCCCTTS
T ss_pred cCeEEEEEeeCccHhHH--HHHHHcCCEEeccCCccH-HHHH-------HHHhchHhHHHHHhhh-hhh--ccccccCCC
Confidence 4899998 889999998 899999999999999999 9999 4578999899999988 975 467899999
Q ss_pred eEEEEecChhHHHHHHHHHcCCCEEEEECCCCCh-hHHHHcCCcccCHHHHhccCCEEEEcCCCCccccccccHHHHhcC
Q 006864 231 TLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPA-DKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKM 309 (628)
Q Consensus 231 tiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~~g~~~~sl~ell~~aDvV~l~~Plt~~t~~li~~~~l~~m 309 (628)
|+||||+|.||+.+|++|++|||+|++||++... ..+...|+...++++++++||+|++|+ +|+++|+++.|++|
T Consensus 259 tVgIIG~G~IG~~vA~~l~~~G~~Viv~d~~~~~~~~a~~~g~~~~~l~ell~~aDiVi~~~----~t~~lI~~~~l~~M 334 (479)
T 1v8b_A 259 IVVICGYGDVGKGCASSMKGLGARVYITEIDPICAIQAVMEGFNVVTLDEIVDKGDFFITCT----GNVDVIKLEHLLKM 334 (479)
T ss_dssp EEEEECCSHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHTTTCEECCHHHHTTTCSEEEECC----SSSSSBCHHHHTTC
T ss_pred EEEEEeeCHHHHHHHHHHHhCcCEEEEEeCChhhHHHHHHcCCEecCHHHHHhcCCEEEECC----ChhhhcCHHHHhhc
Confidence 9999999999999999999999999999998643 245566887789999999999999995 68999999999999
Q ss_pred CCCcEEEEcCCCch-hcHHHHHH--HHhCCCeeEEEeeccCCCCCCCCCccccC--CcEEEcCCCC-CCcHH-HHHHHHH
Q 006864 310 KKGVRIVNVARGGV-IDEEALVR--ALDSGVVAQAALDVFTEEPPAKDSKLVQH--ENVTVTPHLG-ASTKE-AQEGVAI 382 (628)
Q Consensus 310 k~gailIN~aRg~~-vde~aL~~--aL~~g~i~ga~lDV~~~EP~~~~~~L~~~--~nvilTPHig-~~T~e-a~~~~~~ 382 (628)
|+|++|||++||++ ||+++|.+ +|++|+|+ +++||| |++.++|||.+ ||+++| |+| +++.+ ++.+++.
T Consensus 335 K~gailiNvgrg~~EId~~aL~~~~AL~~g~I~-a~lDv~---plp~~~~l~~l~~~nvv~t-H~atghp~e~~~~s~a~ 409 (479)
T 1v8b_A 335 KNNAVVGNIGHFDDEIQVNELFNYKGIHIENVK-PQVDRI---TLPNGNKIIVLARGRLLNL-GCATGHPAFVMSFSFCN 409 (479)
T ss_dssp CTTCEEEECSSTTTSBCHHHHHTSTTCEEEEEE-TTEEEE---ECTTSCEEEEEGGGSBHHH-HSSCCSCHHHHHHHHHH
T ss_pred CCCcEEEEeCCCCccccchhhhccccceeeeEe-eeEEEE---ECCCCCeeeEecCCCEEEE-eccCCCCchhHHHHHHH
Confidence 99999999999999 99999999 99999998 999998 44457899988 999999 999 67766 7889999
Q ss_pred HHHHHHHHHHcCC--CCCCcccCCCCCcccccccccHHHHHHHHhHHHHHHhcCCCCceEEEEEEeecCCCCCC
Q 006864 383 EIAEAVVGALRGE--LSATAINAPMVPSEVLSELAPYVVLAKKLGRLAVQLVSGGSGIKSVKLIYRSARDPDDL 454 (628)
Q Consensus 383 ~~~~~i~~~l~g~--~~~~~vn~p~~~~~~~~~~~p~~~lAerlG~la~qL~~g~~~~~~v~i~~~Gs~a~~~~ 454 (628)
.+++|+..|++|+ .+.|.|+. ++....+++.+ +.| +++|....||..+ ..+.+.|.+.|.+.+..|
T Consensus 410 ~~~~ni~~~~~g~~~~l~n~V~~--lp~~~de~va~-l~L-~~lG~~l~~lt~~--q~~yi~v~~~g~~~~~~~ 477 (479)
T 1v8b_A 410 QTFAQLDLWQNKDTNKYENKVYL--LPKHLDEKVAL-YHL-KKLNASLTELDDN--QCQFLGVNKSGPFKSNEY 477 (479)
T ss_dssp HHHHHHHHHHTTTSSSCCSSEEC--CCHHHHHHHHH-HHH-GGGTCCCCCCCHH--HHHHHTCCTTSCCSCTTC
T ss_pred HHHHHHHHHHcCCCCcCCcceEe--CChhhHHHHHH-HHH-HHcCChHhhcChh--hhhhEeeeeCCCCCcccC
Confidence 9999999999999 88887762 33444444555 456 7777777777665 566677778887764444
|
| >3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydro NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei} PDB: 3glq_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-40 Score=361.35 Aligned_cols=274 Identities=17% Similarity=0.209 Sum_probs=231.0
Q ss_pred CcceeEE-ecccccCcccHhHHHhcCceEEcCCCCChhhHHHHHHHHHHHHHHchhHHHHHHHcCcccccccceeeecCC
Q 006864 152 GKLKVVG-RAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGK 230 (628)
Q Consensus 152 ~~Lk~I~-~~g~G~D~iDl~aa~~~GI~V~n~p~~~~~avAE~~l~l~L~~~R~i~~~~~~~~~g~W~~~~~~g~~l~Gk 230 (628)
+++|.|+ .+++|+|++ ++|+++||.|+|+|++|. +|||+ ++|++....+.++.| |.+ ..|.++.||
T Consensus 212 ~~l~gi~eet~~Gvd~l--~a~~~~Gilv~n~~~vn~-sVae~-------l~r~~~~~~~~l~~g-w~~--~~g~~L~Gk 278 (494)
T 3d64_A 212 AHIKGVTEETTTGVHRL--YQMEKDGRLPFPAFNVND-SVTKS-------KFDNLYGCRESLVDG-IKR--ATDVMIAGK 278 (494)
T ss_dssp TTCCCEEECSHHHHHHH--HHHHHTTCCCSCEEECTT-SHHHH-------HHHHHHHHHTTHHHH-HHH--HHCCCCTTC
T ss_pred hCcEEEEEEcccCHhhH--HHHHHCCCEEEECCCccH-HHHHH-------HHhhhHhhhhhhhhh-hhh--ccccccCCC
Confidence 4899998 889999998 899999999999999999 99994 458888887788877 865 467899999
Q ss_pred eEEEEecChhHHHHHHHHHcCCCEEEEECCCCChh-HHHHcCCcccCHHHHhccCCEEEEcCCCCccccccccHHHHhcC
Q 006864 231 TLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPAD-KARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKM 309 (628)
Q Consensus 231 tiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~-~a~~~g~~~~sl~ell~~aDvV~l~~Plt~~t~~li~~~~l~~m 309 (628)
|+||||+|+||+.+|++|++|||+|++||++.... .+...|+...++++++++||+|++|+ +|+++|+++.|++|
T Consensus 279 tVgIIG~G~IG~~vA~~l~~~G~~V~v~d~~~~~~~~a~~~G~~~~~l~ell~~aDiVi~~~----~t~~lI~~~~l~~M 354 (494)
T 3d64_A 279 IAVVAGYGDVGKGCAQSLRGLGATVWVTEIDPICALQAAMEGYRVVTMEYAADKADIFVTAT----GNYHVINHDHMKAM 354 (494)
T ss_dssp EEEEECCSHHHHHHHHHHHTTTCEEEEECSCHHHHHHHHTTTCEECCHHHHTTTCSEEEECS----SSSCSBCHHHHHHC
T ss_pred EEEEEccCHHHHHHHHHHHHCCCEEEEEeCChHhHHHHHHcCCEeCCHHHHHhcCCEEEECC----CcccccCHHHHhhC
Confidence 99999999999999999999999999999986432 34456788889999999999999997 68999999999999
Q ss_pred CCCcEEEEcCCCch-hcHHHHHHHHhCCCeeEEEeeccCCCCCCCCCccccC--CcEEEcCCCC-CCcHH-HHHHHHHHH
Q 006864 310 KKGVRIVNVARGGV-IDEEALVRALDSGVVAQAALDVFTEEPPAKDSKLVQH--ENVTVTPHLG-ASTKE-AQEGVAIEI 384 (628)
Q Consensus 310 k~gailIN~aRg~~-vde~aL~~aL~~g~i~ga~lDV~~~EP~~~~~~L~~~--~nvilTPHig-~~T~e-a~~~~~~~~ 384 (628)
|+|++|||++||++ ||+++| ++|++|+|+ +++|+ +|++.++|||.+ ||+++| |+| +++.+ ++.+++..+
T Consensus 355 K~gAilINvgrg~veID~~aL-~AL~~g~I~-~~~Dv---~plp~~~pL~~l~~~nvv~t-H~atg~~~~~~~~~~a~~~ 428 (494)
T 3d64_A 355 RHNAIVCNIGHFDSEIDVAST-RQYQWENIK-PQVDH---IIFPDGKRVILLAEGRLVNL-GCATGHPSFVMSNSFTNQT 428 (494)
T ss_dssp CTTEEEEECSSSSCSBCCGGG-TTSEEEEEE-TTEEE---EECTTSCEEEEEGGGSBHHH-HTSCCSCHHHHHHHHHHHH
T ss_pred CCCcEEEEcCCCcchhchHHH-HhhhcCccc-eeEEE---EECCCCCchhhcCCCCEEEE-eCcCCCCHHHHHHHHHHHH
Confidence 99999999999999 699999 999999997 55555 577778999998 999999 999 66754 888999999
Q ss_pred HHHHHHHHcCCCCCCcccCCCCCcccccccccHHHHHHHHhHHHHHHhcCCCCceEEEEEEeecCCCCCC
Q 006864 385 AEAVVGALRGELSATAINAPMVPSEVLSELAPYVVLAKKLGRLAVQLVSGGSGIKSVKLIYRSARDPDDL 454 (628)
Q Consensus 385 ~~~i~~~l~g~~~~~~vn~p~~~~~~~~~~~p~~~lAerlG~la~qL~~g~~~~~~v~i~~~Gs~a~~~~ 454 (628)
++|+..|++|+.+.+.|+. ++.+.-+++.+ +.| +++|....||..+ ..+.+.|.+.|.+.+..|
T Consensus 429 ~~ni~~~~~g~~~~n~V~~--lp~~~d~~va~-l~L-~~~g~~~~~l~~~--q~~y~~v~~~g~~~~~~~ 492 (494)
T 3d64_A 429 LAQIELFTRGGEYANKVYV--LPKHLDEKVAR-LHL-ARIGAQLSELSDD--QAAYIGVSKAGPFKPDHY 492 (494)
T ss_dssp HHHHHHHHHGGGSCSSEEE--CCHHHHHHHHH-HHH-TTTTCCCCCCCHH--HHHHHTCCTTSCCSCTTC
T ss_pred HHHHHHHHcCCCCCCceee--CChhHHHHHHH-HHH-HHcCChHHhhChh--hHHhEeeccCCCCCcccC
Confidence 9999999999999999862 23343334544 667 7778777777766 566677778888774444
|
| >3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.1e-28 Score=254.56 Aligned_cols=206 Identities=20% Similarity=0.226 Sum_probs=167.3
Q ss_pred CCCCeEEEeCC--CCHhHHHHhhcCC-cEEEecC----------CCHhHHHhhcCCCeEEEEc----------------C
Q 006864 88 TPKPTILVSEK--LGEAGLAILRSFG-NVECLYD----------LSPEALCEKISQCDALIVR----------------S 138 (628)
Q Consensus 88 ~~~~~vlv~~~--l~~~~~~~l~~~~-~v~~~~~----------~~~~el~~~~~~~d~liv~----------------~ 138 (628)
|.+++|++... ...+..+.|.+.+ ++..... ...+++.+.++++|+++++ .
T Consensus 3 ~~~m~i~v~~~~~~~~~~~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~~~~~~~~~~i~~~~~~~ 82 (293)
T 3d4o_A 3 LTGKHVVIIGGDARQLEIIRKLSTFDAKISLVGFDQLDDGFIGVTKMRIDEVDWNTVDAILLPISGTNEAGKVDTIFSNE 82 (293)
T ss_dssp CTTCEEEEECBCHHHHHHHHHHHHTTCEEEEESCTTCC--CTTCEEECGGGCCGGGCSEEECCTTCCCTTCBCCBSSCSC
T ss_pred ccCcEEEEECCCHHHHHHHHHHHhCCCEEEEeccccccccccccccccchHHHHhcCCEEEeccccccCCceeecccccC
Confidence 44567888753 3345566676654 6654321 0125667778899999985 2
Q ss_pred CCCCCHHHHHhcCCcceeEEecccccCcccH-hHHHhcCceEEcCC------CCChhhHHHHHHHHHHHHHHchhHHHHH
Q 006864 139 GTKVTRSVFEAANGKLKVVGRAGVGIDNVDL-QAATEFGCLVVNAP------IANTVAAAEHGIALLASMARNVSQADAS 211 (628)
Q Consensus 139 ~~~v~~~~l~~~~~~Lk~I~~~g~G~D~iDl-~aa~~~GI~V~n~p------~~~~~avAE~~l~l~L~~~R~i~~~~~~ 211 (628)
.+++++++++++ |+||+|+ +|+||+|+ ++|+++||.|+|+| ++|+.+|||++++++|..
T Consensus 83 ~~~~~~~~l~~~-~~l~~i~---~G~d~id~~~~~~~~gi~v~~~~~~~~~~~~~~~svae~a~~~~l~~---------- 148 (293)
T 3d4o_A 83 SIVLTEEMIEKT-PNHCVVY---SGISNTYLNQCMKKTNRTLVKLMERDDIAIYNSIPTAEGTIMMAIQH---------- 148 (293)
T ss_dssp CCBCCHHHHHTS-CTTCEEE---ESSCCHHHHHHHHHHTCEEEEGGGCHHHHHHHHHHHHHHHHHHHHHH----------
T ss_pred CccchHHHHHhC-CCCCEEE---ecCCCHHHHHHHHHcCCeEEEecCCceeeeeccHhHHHHHHHHHHHh----------
Confidence 346899999988 5899997 89999998 89999999999998 899999999999998852
Q ss_pred HHcCcccccccceeeecCCeEEEEecChhHHHHHHHHHcCCCEEEEECCCCCh-hHHHHcCCcc---cCHHHHhccCCEE
Q 006864 212 IKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPA-DKARAVGVEL---VSFDQALATADFI 287 (628)
Q Consensus 212 ~~~g~W~~~~~~g~~l~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~~g~~~---~sl~ell~~aDvV 287 (628)
.+.++.|+|+||||+|.||+.+|++|++|||+|++||++... +.+.+.|+.. .++++++++||+|
T Consensus 149 -----------~~~~l~g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~l~~~l~~aDvV 217 (293)
T 3d4o_A 149 -----------TDFTIHGANVAVLGLGRVGMSVARKFAALGAKVKVGARESDLLARIAEMGMEPFHISKAAQELRDVDVC 217 (293)
T ss_dssp -----------CSSCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTSEEEEGGGHHHHTTTCSEE
T ss_pred -----------cCCCCCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHCCCeecChhhHHHHhcCCCEE
Confidence 256799999999999999999999999999999999998532 3344567654 3789999999999
Q ss_pred EEcCCCCccccccccHHHHhcCCCCcEEEEcCCCch
Q 006864 288 SLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGV 323 (628)
Q Consensus 288 ~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~~ 323 (628)
++|+|+ ++++++.|+.||+++++||++||..
T Consensus 218 i~~~p~-----~~i~~~~l~~mk~~~~lin~ar~~~ 248 (293)
T 3d4o_A 218 INTIPA-----LVVTANVLAEMPSHTFVIDLASKPG 248 (293)
T ss_dssp EECCSS-----CCBCHHHHHHSCTTCEEEECSSTTC
T ss_pred EECCCh-----HHhCHHHHHhcCCCCEEEEecCCCC
Confidence 999995 7889999999999999999999754
|
| >3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=5.3e-29 Score=275.47 Aligned_cols=273 Identities=18% Similarity=0.180 Sum_probs=218.4
Q ss_pred cceeE-EecccccCcccHhHHHhcCceEEcCCCCChhhHHHHHHHHHHHHHHchhHHHHHHHcCcccccccceeeecCCe
Q 006864 153 KLKVV-GRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGKT 231 (628)
Q Consensus 153 ~Lk~I-~~~g~G~D~iDl~aa~~~GI~V~n~p~~~~~avAE~~l~l~L~~~R~i~~~~~~~~~g~W~~~~~~g~~l~Gkt 231 (628)
+++-| ...|+|||++ .++.++||.++|++++|. ++||+ ++|++....+.+..+ |.+ ..+..+.|++
T Consensus 210 ~i~GvveetgtGVd~l--~a~~~~Gilv~~~~~vn~-sVae~-------~~r~l~~~~~s~~~g-~~r--~~~~~l~Gkt 276 (494)
T 3ce6_A 210 SVKGVTEETTTGVLRL--YQFAAAGDLAFPAINVND-SVTKS-------KFDNKYGTRHSLIDG-INR--GTDALIGGKK 276 (494)
T ss_dssp HCCCEEECSHHHHHHH--HHHHHTTCCCSCEEECTT-SHHHH-------TTHHHHHHHHHHHHH-HHH--HHCCCCTTCE
T ss_pred CeEEEEEEeCCChhHH--HHHHHcCCEEEecCCccH-HHHHH-------HHhhhhhhhhhhhHH-HHh--ccCCCCCcCE
Confidence 45545 4789999998 788999999999999999 99994 346666665555555 654 2355789999
Q ss_pred EEEEecChhHHHHHHHHHcCCCEEEEECCCCCh-hHHHHcCCcccCHHHHhccCCEEEEcCCCCccccccccHHHHhcCC
Q 006864 232 LAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPA-DKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMK 310 (628)
Q Consensus 232 iGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~~g~~~~sl~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk 310 (628)
++|+|+|.||+.+|++++++|++|+++|++... +.+.+.|+...+++++++++|+|+.|++ +.++++.+.|+.||
T Consensus 277 V~IiG~G~IG~~~A~~lka~Ga~Viv~d~~~~~~~~A~~~Ga~~~~l~e~l~~aDvVi~atg----t~~~i~~~~l~~mk 352 (494)
T 3ce6_A 277 VLICGYGDVGKGCAEAMKGQGARVSVTEIDPINALQAMMEGFDVVTVEEAIGDADIVVTATG----NKDIIMLEHIKAMK 352 (494)
T ss_dssp EEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECCHHHHGGGCSEEEECSS----SSCSBCHHHHHHSC
T ss_pred EEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCEEecHHHHHhCCCEEEECCC----CHHHHHHHHHHhcC
Confidence 999999999999999999999999999998633 4567788887899999999999999975 56788989999999
Q ss_pred CCcEEEEcCCCch-hcHHHHHH-HHhCCCeeEEEeeccCCCCCCCCCc--cccCCcEE----EcCCCCCCcHHHHHHHHH
Q 006864 311 KGVRIVNVARGGV-IDEEALVR-ALDSGVVAQAALDVFTEEPPAKDSK--LVQHENVT----VTPHLGASTKEAQEGVAI 382 (628)
Q Consensus 311 ~gailIN~aRg~~-vde~aL~~-aL~~g~i~ga~lDV~~~EP~~~~~~--L~~~~nvi----lTPHig~~T~ea~~~~~~ 382 (628)
+|++++|++|++. +|+++|.+ +|++++|. +++|+|+.++. +++ |+..+|++ +|||+++.+.+++ ..
T Consensus 353 ~ggilvnvG~~~~eId~~aL~~~aL~~~~I~-~~ldv~~~~~~--~~~l~LL~~grlvnL~~~TPH~a~~~~~s~---~~ 426 (494)
T 3ce6_A 353 DHAILGNIGHFDNEIDMAGLERSGATRVNVK-PQVDLWTFGDT--GRSIIVLSEGRLLNLGNATGHPSFVMSNSF---AN 426 (494)
T ss_dssp TTCEEEECSSSGGGBCHHHHHHTTCEEEEEE-TTEEEEECTTT--CCEEEEEGGGSCHHHHHSCCSCHHHHHHHH---HH
T ss_pred CCcEEEEeCCCCCccCHHHHHHhhhccceEE-EEEEEeecCCc--chHHHHHhCCCEEeccCCCCCccccchHHH---HH
Confidence 9999999999999 99999998 88888886 67899876432 344 67788998 9999999888764 67
Q ss_pred HHHHHHHHHHcCCCCCCcccCCCCCcccccccccHHHHHHHHhHHHHHHhcCCCCceEEEEEEeecCCCCCC
Q 006864 383 EIAEAVVGALRGELSATAINAPMVPSEVLSELAPYVVLAKKLGRLAVQLVSGGSGIKSVKLIYRSARDPDDL 454 (628)
Q Consensus 383 ~~~~~i~~~l~g~~~~~~vn~p~~~~~~~~~~~p~~~lAerlG~la~qL~~g~~~~~~v~i~~~Gs~a~~~~ 454 (628)
++.+++..+++|+...+.| .+.++.+|+...+++| .++|....+|..+ ..+-+.+.+.|.|.+..|
T Consensus 427 qa~~ai~~~~~g~~~~~~V---~~~P~~~De~vA~lhL-~~lg~~l~~lt~~--q~~y~~v~~~G~~k~~~~ 492 (494)
T 3ce6_A 427 QTIAQIELWTKNDEYDNEV---YRLPKHLDEKVARIHV-EALGGHLTKLTKE--QAEYLGVDVEGPYKPDHY 492 (494)
T ss_dssp HHHHHHHHHHTGGGCCSSE---ECCCHHHHHHHHHHHH-HHHTCCCCCCCHH--HHHHHTCCTTSCCSCTTC
T ss_pred HHHHHHHHHHcCCCCCCEE---EECHHHHHHHHHHhhH-HHHHHHHHHhChh--HHHHcccccCCCCCcccC
Confidence 8899999999988777776 3457778776666777 6667666666655 445556667777764443
|
| >2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.93 E-value=3.9e-26 Score=238.11 Aligned_cols=210 Identities=16% Similarity=0.188 Sum_probs=162.4
Q ss_pred CCCCeEEEeCC--CCHhHHHHhhcCC-cEEEecCCCH-----------hHHHhhcCCCeEEEE----cC----------C
Q 006864 88 TPKPTILVSEK--LGEAGLAILRSFG-NVECLYDLSP-----------EALCEKISQCDALIV----RS----------G 139 (628)
Q Consensus 88 ~~~~~vlv~~~--l~~~~~~~l~~~~-~v~~~~~~~~-----------~el~~~~~~~d~liv----~~----------~ 139 (628)
|+.+||++... ......+.|.+.+ ++... .++. +++.+.++++|++++ .. .
T Consensus 5 ~~~mki~v~~~~~~~~~~~~~L~~~g~~v~~~-~~~~~~~~~~g~~~~~~~~~~~~~~d~ii~~~~~~~~~~~i~s~~a~ 83 (300)
T 2rir_A 5 LTGLKIAVIGGDARQLEIIRKLTEQQADIYLV-GFDQLDHGFTGAVKCNIDEIPFQQIDSIILPVSATTGEGVVSTVFSN 83 (300)
T ss_dssp CCSCEEEEESBCHHHHHHHHHHHHTTCEEEEE-SCTTSSCCCTTEEECCGGGSCGGGCSEEECCSSCEETTTEECBSSCS
T ss_pred ccCCEEEEECCCHHHHHHHHHHHhCCCEEEEE-eccccccccccceeccchHHHHhcCCEEEeccccccCCccccccccc
Confidence 44568888854 3345566676654 55543 2222 235667889999997 21 3
Q ss_pred CC--CCHHHHHhcCCcceeEEecccccCccc-HhHHHhcCceEEcCCCCChhhHHHHHHHHHHHHHHchhHHHHHHHcCc
Q 006864 140 TK--VTRSVFEAANGKLKVVGRAGVGIDNVD-LQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGK 216 (628)
Q Consensus 140 ~~--v~~~~l~~~~~~Lk~I~~~g~G~D~iD-l~aa~~~GI~V~n~p~~~~~avAE~~l~l~L~~~R~i~~~~~~~~~g~ 216 (628)
.+ +++++++++ ++||+|+ +|+||+| +++|+++||.|+|+|++++ + ++.|+++.+ +|.
T Consensus 84 ~~~~~~~~~l~~~-~~l~~i~---~g~~~~d~~~~~~~~gi~v~~~~~~~~--v---------~~~r~~~~~-----~g~ 143 (300)
T 2rir_A 84 EEVVLKQDHLDRT-PAHCVIF---SGISNAYLENIAAQAKRKLVKLFERDD--I---------AIYNSIPTV-----EGT 143 (300)
T ss_dssp SCEECCHHHHHTS-CTTCEEE---ESSCCHHHHHHHHHTTCCEEEGGGSHH--H---------HHHHHHHHH-----HHH
T ss_pred CCccchHHHHhhc-CCCCEEE---EecCCHHHHHHHHHCCCEEEeecCCCc--e---------EEEcCccHH-----HHH
Confidence 56 899999988 4899998 8999999 9999999999999999853 2 345666554 456
Q ss_pred cccc-ccceeeecCCeEEEEecChhHHHHHHHHHcCCCEEEEECCCCCh-hHHHHcCCc---ccCHHHHhccCCEEEEcC
Q 006864 217 WLRS-KYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPA-DKARAVGVE---LVSFDQALATADFISLHM 291 (628)
Q Consensus 217 W~~~-~~~g~~l~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~~g~~---~~sl~ell~~aDvV~l~~ 291 (628)
|... ...+.++.|+|+||||+|.||+.+|++|++|||+|++||++... +...+.|+. ..++++++++||+|++|+
T Consensus 144 ~~~~~~~~~~~l~g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~~~l~~~l~~aDvVi~~~ 223 (300)
T 2rir_A 144 IMLAIQHTDYTIHGSQVAVLGLGRTGMTIARTFAALGANVKVGARSSAHLARITEMGLVPFHTDELKEHVKDIDICINTI 223 (300)
T ss_dssp HHHHHHTCSSCSTTSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCEEEEGGGHHHHSTTCSEEEECC
T ss_pred HHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCeEEchhhHHHHhhCCCEEEECC
Confidence 7532 23578999999999999999999999999999999999997532 223345664 247999999999999999
Q ss_pred CCCccccccccHHHHhcCCCCcEEEEcCCCch
Q 006864 292 PLNPTTSKIFNDETFAKMKKGVRIVNVARGGV 323 (628)
Q Consensus 292 Plt~~t~~li~~~~l~~mk~gailIN~aRg~~ 323 (628)
|+ ++++++.|+.||+|+++||++||+.
T Consensus 224 p~-----~~i~~~~~~~mk~g~~lin~a~g~~ 250 (300)
T 2rir_A 224 PS-----MILNQTVLSSMTPKTLILDLASRPG 250 (300)
T ss_dssp SS-----CCBCHHHHTTSCTTCEEEECSSTTC
T ss_pred Ch-----hhhCHHHHHhCCCCCEEEEEeCCCC
Confidence 96 6889999999999999999999854
|
| >2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=2.5e-23 Score=223.91 Aligned_cols=245 Identities=18% Similarity=0.220 Sum_probs=182.7
Q ss_pred CCHhHHHHhhcCC-cEEEe------cCCCHhHHH-----------hhcCCCeEEEEcCCCCCCHHHHHhcCCcceeEEec
Q 006864 99 LGEAGLAILRSFG-NVECL------YDLSPEALC-----------EKISQCDALIVRSGTKVTRSVFEAANGKLKVVGRA 160 (628)
Q Consensus 99 l~~~~~~~l~~~~-~v~~~------~~~~~~el~-----------~~~~~~d~liv~~~~~v~~~~l~~~~~~Lk~I~~~ 160 (628)
+.|+..+.|.+.+ +|.+. ..+++++.. +.+.++|+| +....++++++.... ++..+++..
T Consensus 18 ltP~~v~~L~~~G~~V~ve~~ag~~~~f~d~~y~~aGa~i~~~~~~~~~~adii-~~vk~p~~~e~~~l~-~~~~l~~~~ 95 (377)
T 2vhw_A 18 ITPAGVAELTRRGHEVLIQAGAGEGSAITDADFKAAGAQLVGTADQVWADADLL-LKVKEPIAAEYGRLR-HGQILFTFL 95 (377)
T ss_dssp CCHHHHHHHHHTTCEEEEETTTTGGGTCCHHHHHHHTCEEESCHHHHHHHCSEE-ECSSCCCGGGGGGCC-TTCEEEECC
T ss_pred cCHHHHHHHHhCCCEEEEeCCCCcCCCCCHHHHHHCCCEEecCHHHHhccCCEE-EEeCCCChHHHhhcC-CCCEEEEEe
Confidence 5567777776554 55442 244555554 234568976 455556666666544 578888888
Q ss_pred ccccCcccHhHHHhcCceEE----------cCCCCChhhHHHHHHHHHHHHH-HchhHHHHHHHcCcccccccceeeecC
Q 006864 161 GVGIDNVDLQAATEFGCLVV----------NAPIANTVAAAEHGIALLASMA-RNVSQADASIKAGKWLRSKYVGVSLVG 229 (628)
Q Consensus 161 g~G~D~iDl~aa~~~GI~V~----------n~p~~~~~avAE~~l~l~L~~~-R~i~~~~~~~~~g~W~~~~~~g~~l~G 229 (628)
..++|..+++++.++||.++ |.|.+++. ||++..+++.+. |++. ..+.|+|..... ..++.|
T Consensus 96 ~~~~~~~~l~~l~~~gi~~ia~e~v~~~~~~~p~~s~~--ae~ag~~a~~~a~r~l~----~~~~g~~~~~~~-~~~l~g 168 (377)
T 2vhw_A 96 HLAASRACTDALLDSGTTSIAYETVQTADGALPLLAPM--SEVAGRLAAQVGAYHLM----RTQGGRGVLMGG-VPGVEP 168 (377)
T ss_dssp CGGGCHHHHHHHHHHTCEEEEGGGCCCTTSCCTTTHHH--HHHHHHHHHHHHHHHTS----GGGTSCCCCTTC-BTTBCC
T ss_pred cccCCHHHHHHHHHcCCeEEEeeeccccCCCccccCch--HHHHHHHHHHHHHHHHH----HhcCCCcccccC-CCCCCC
Confidence 88999999999999999997 67776654 499985554444 7773 344555432111 136899
Q ss_pred CeEEEEecChhHHHHHHHHHcCCCEEEEECCCCCh-hHHHH-cCCc-------ccCHHHHhccCCEEEEcC--CCCcccc
Q 006864 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPA-DKARA-VGVE-------LVSFDQALATADFISLHM--PLNPTTS 298 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~-~g~~-------~~sl~ell~~aDvV~l~~--Plt~~t~ 298 (628)
++++|+|+|.||+.+|++++++|++|+++|++... +.+.+ .|.. ..+++++++++|+|+.++ |.+ ++.
T Consensus 169 ~~V~ViG~G~iG~~~a~~a~~~Ga~V~~~d~~~~~l~~~~~~~g~~~~~~~~~~~~l~~~l~~aDvVi~~~~~p~~-~t~ 247 (377)
T 2vhw_A 169 ADVVVIGAGTAGYNAARIANGMGATVTVLDINIDKLRQLDAEFCGRIHTRYSSAYELEGAVKRADLVIGAVLVPGA-KAP 247 (377)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTTTSSEEEECCHHHHHHHHHHCSEEEECCCCTTS-CCC
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHhcCCeeEeccCCHHHHHHHHcCCCEEEECCCcCCC-CCc
Confidence 99999999999999999999999999999987532 23333 4543 236788899999999966 655 789
Q ss_pred ccccHHHHhcCCCCcEEEEcC--CCchhcHHHHHHHHhCCCeeEEEeeccCC-CCCCCCCccccCCcEE--EcCCCCCCc
Q 006864 299 KIFNDETFAKMKKGVRIVNVA--RGGVIDEEALVRALDSGVVAQAALDVFTE-EPPAKDSKLVQHENVT--VTPHLGAST 373 (628)
Q Consensus 299 ~li~~~~l~~mk~gailIN~a--Rg~~vde~aL~~aL~~g~i~ga~lDV~~~-EP~~~~~~L~~~~nvi--lTPHig~~T 373 (628)
++++++.++.||+|++|||++ +|+ ||+. ||.+.++|+|..+|++ +|||+++.+
T Consensus 248 ~li~~~~l~~mk~g~~iV~va~~~Gg----------------------v~e~~ep~~~~~~~~~~~~v~i~~~phl~~~~ 305 (377)
T 2vhw_A 248 KLVSNSLVAHMKPGAVLVDIAIDQGG----------------------CFEGSRPTTYDHPTFAVHDTLFYCVANMPASV 305 (377)
T ss_dssp CCBCHHHHTTSCTTCEEEEGGGGTTC----------------------SBTTCCCBCSSSCEEEETTEEEECBTTGGGGS
T ss_pred ceecHHHHhcCCCCcEEEEEecCCCC----------------------ccccccCCCCCCCEEEECCEEEEecCCcchhh
Confidence 999999999999999999998 332 6887 8887789999999998 999999998
Q ss_pred HH
Q 006864 374 KE 375 (628)
Q Consensus 374 ~e 375 (628)
..
T Consensus 306 ~~ 307 (377)
T 2vhw_A 306 PK 307 (377)
T ss_dssp HH
T ss_pred HH
Confidence 66
|
| >2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.81 E-value=2e-19 Score=192.86 Aligned_cols=277 Identities=17% Similarity=0.199 Sum_probs=179.8
Q ss_pred CCHhHHHHhhcCC-cEEEe------cCCCHhHHHh----------hcCCCeEEEEcCCCCCCHHHHHhcCCcceeEEecc
Q 006864 99 LGEAGLAILRSFG-NVECL------YDLSPEALCE----------KISQCDALIVRSGTKVTRSVFEAANGKLKVVGRAG 161 (628)
Q Consensus 99 l~~~~~~~l~~~~-~v~~~------~~~~~~el~~----------~~~~~d~liv~~~~~v~~~~l~~~~~~Lk~I~~~g 161 (628)
+.|+..+.|.+.+ +|.+. ..+++++..+ .+ ++|+|+ ....++.++ ++.+++++++|+...
T Consensus 18 l~P~~v~~L~~~g~~v~ve~~ag~~~~~~d~~y~~aga~i~~~~~~~-~ad~il-~vk~p~~~~-~~~l~~~~~~~~~~~ 94 (369)
T 2eez_A 18 LTPGGVESLVRRGHTVLVERGAGEGSGLSDAEYARAGAELVGREEAW-GAEMVV-KVKEPLPEE-YGFLREGLILFTYLH 94 (369)
T ss_dssp SCHHHHHHHHHTTCEEEEETTTTGGGTCCHHHHHHHTCEEECHHHHT-TSSEEE-CSSCCCGGG-GGGCCTTCEEEECCC
T ss_pred cCHHHHHHHHhCCCEEEEeCCCCccCCCCHHHHHHCCCEEeccccee-cCCEEE-EECCCCHHH-HhhcCCCcEEEEEec
Confidence 5677777776654 55442 3456666554 45 899876 444455444 666656899999999
Q ss_pred cccCcccHhHHHhcCceEE---cCCCC-Ch----hhHHHHHH--HHHHHHHHchhHHHHHHHcCcccccccceeeecCCe
Q 006864 162 VGIDNVDLQAATEFGCLVV---NAPIA-NT----VAAAEHGI--ALLASMARNVSQADASIKAGKWLRSKYVGVSLVGKT 231 (628)
Q Consensus 162 ~G~D~iDl~aa~~~GI~V~---n~p~~-~~----~avAE~~l--~l~L~~~R~i~~~~~~~~~g~W~~~~~~g~~l~Gkt 231 (628)
.+.|+.+++++.++||.+. +.+.. .. .++++.+- +.++++ +.+..... ..+.|... ..++.|++
T Consensus 95 ~~~~~~~~~~l~~~gi~~ia~e~~~~~~~~~~~l~~~s~~ag~~av~~a~-~~l~~~~~--g~~~~~~~---~~~l~~~~ 168 (369)
T 2eez_A 95 LAADRGLTEAMLRSGVTGIAYETVQLPDGTLPLLVPMSEVAGRMAPQVGA-QFLEKPKG--GRGVLLGG---VPGVAPAS 168 (369)
T ss_dssp GGGCHHHHHHHHHHTCEEEEGGGCCCTTCCCTTTHHHHHHHHHHHHHHHH-HHTSGGGT--SCCCCTTC---BTBBCCCE
T ss_pred ccCCHHHHHHHHHCCCeEEEeeccccccCCeeecccchHHHHHHHHHHHH-HHHHHhcC--CCceecCC---CCCCCCCE
Confidence 9999999999999999998 55542 11 34444443 444333 22322210 11223221 13689999
Q ss_pred EEEEecChhHHHHHHHHHcCCCEEEEECCCCCh-hHHHH-cCCc-------ccCHHHHhccCCEEEEcCCCCc-cccccc
Q 006864 232 LAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPA-DKARA-VGVE-------LVSFDQALATADFISLHMPLNP-TTSKIF 301 (628)
Q Consensus 232 iGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~-~g~~-------~~sl~ell~~aDvV~l~~Plt~-~t~~li 301 (628)
++|+|.|.||+.+|+.++++|++|+++|++... +.+.+ .|.. ..+++++++++|+|+.|++... .+.+++
T Consensus 169 V~ViGaG~iG~~~a~~l~~~Ga~V~~~d~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~~~~~DvVi~~~g~~~~~~~~li 248 (369)
T 2eez_A 169 VVILGGGTVGTNAAKIALGMGAQVTILDVNHKRLQYLDDVFGGRVITLTATEANIKKSVQHADLLIGAVLVPGAKAPKLV 248 (369)
T ss_dssp EEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTTTSEEEEECCHHHHHHHHHHCSEEEECCC-------CCS
T ss_pred EEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHhcCceEEEecCCHHHHHHHHhCCCEEEECCCCCccccchhH
Confidence 999999999999999999999999999987532 22333 4442 2357788999999999999775 678889
Q ss_pred cHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhCCCeeEEEeeccCCCCCCCCCccccCCcEE---------EcCCCCCC
Q 006864 302 NDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVT---------VTPHLGAS 372 (628)
Q Consensus 302 ~~~~l~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~ga~lDV~~~EP~~~~~~L~~~~nvi---------lTPHig~~ 372 (628)
.++.++.||+|+++||++- ..| |+ +|++ ||.+.+.|++..+|+. +|||.++.
T Consensus 249 ~~~~l~~mk~gg~iV~v~~-------------~~g---g~-~d~~--ep~~~~~~~~~~~~v~~~~v~~lp~~~p~~as~ 309 (369)
T 2eez_A 249 TRDMLSLMKEGAVIVDVAV-------------DQG---GC-VETI--RPTTHAEPTYVVDGVVHYGVANMPGAVPRTSTF 309 (369)
T ss_dssp CHHHHTTSCTTCEEEECC--------------------------------------CEETTEEEECCSCSGGGSHHHHHH
T ss_pred HHHHHHhhcCCCEEEEEec-------------CCC---CC-CCcc--cCCCCCCCEEEECCEEEEeeCCcchhcHHHHHH
Confidence 9999999999999999982 122 44 8988 7766678899999999 88998875
Q ss_pred --cHHHHHHHHHHHHHHHHHHHcCCCCCCcccC
Q 006864 373 --TKEAQEGVAIEIAEAVVGALRGELSATAINA 403 (628)
Q Consensus 373 --T~ea~~~~~~~~~~~i~~~l~g~~~~~~vn~ 403 (628)
+.+.+..+...+.+++..++.++...+.+|.
T Consensus 310 ~~~~~~~~~l~~l~~~g~~~~~~~~~l~~~~~~ 342 (369)
T 2eez_A 310 ALTNQTLPYVLKLAEKGLDALLEDAALLKGLNT 342 (369)
T ss_dssp HHHHHHHHHHHHHHHHTTHHHHSCHHHHTTEEE
T ss_pred HHHHHHHHHHHHHHhcChhhhhcChHHhcCEEe
Confidence 5677778878888877667777666666653
|
| >1gtm_A Glutamate dehydrogenase; oxidoreductase, NAD, NADP; 2.20A {Pyrococcus furiosus} SCOP: c.2.1.7 c.58.1.1 PDB: 1bvu_A 1euz_A | Back alignment and structure |
|---|
Probab=99.80 E-value=8.3e-21 Score=206.33 Aligned_cols=155 Identities=21% Similarity=0.341 Sum_probs=128.0
Q ss_pred eee-ecCCeEEEEecChhHHHHHHHHHc-CCCEEEEE-CCCCChhHHHHcCCcccCHHHHhccCCE-EEEcCCCCccccc
Q 006864 224 GVS-LVGKTLAVMGFGKVGSEVARRAKG-LGMNVIAH-DPYAPADKARAVGVELVSFDQALATADF-ISLHMPLNPTTSK 299 (628)
Q Consensus 224 g~~-l~GktiGIIGlG~IG~~vA~~l~~-~G~~V~~~-d~~~~~~~a~~~g~~~~sl~ell~~aDv-V~l~~Plt~~t~~ 299 (628)
|.+ |+|||+||+|+|+||+.+|++|++ |||+|++| |++... .+...++++++++.+|. .++ +|+ ++|++
T Consensus 206 G~~~l~gktvgI~G~G~VG~~vA~~l~~~~G~kVv~~sD~~g~~-----~~~~gvdl~~L~~~~d~~~~l-~~l-~~t~~ 278 (419)
T 1gtm_A 206 GWDTLKGKTIAIQGYGNAGYYLAKIMSEDFGMKVVAVSDSKGGI-----YNPDGLNADEVLKWKNEHGSV-KDF-PGATN 278 (419)
T ss_dssp TCSCSTTCEEEEECCSHHHHHHHHHHHHTTCCEEEEEECSSCEE-----EEEEEECHHHHHHHHHHHSSS-TTC-TTSEE
T ss_pred CCcccCCCEEEEEcCCHHHHHHHHHHHHhcCCEEEEEeCCCccc-----cCccCCCHHHHHHHHHhcCEe-ecC-ccCee
Confidence 567 999999999999999999999999 99999999 554310 11123477777775553 333 577 67888
Q ss_pred cccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhCCCeeEEEeeccCCCCCCCC-CccccCCcEEEcCCC----C----
Q 006864 300 IFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEEPPAKD-SKLVQHENVTVTPHL----G---- 370 (628)
Q Consensus 300 li~~~~l~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~ga~lDV~~~EP~~~~-~~L~~~~nvilTPHi----g---- 370 (628)
++.+.|..||+ .++||||||++||+++ +++|+.+.|++++ +||++++ ++||..+||++|||+ |
T Consensus 279 -i~~~~l~~mk~-dilIn~ArG~~Vde~a-~~aL~~~~I~~aA-----neP~t~~a~~ll~~~~V~itPhiaaNaGGvt~ 350 (419)
T 1gtm_A 279 -ITNEELLELEV-DVLAPAAIEEVITKKN-ADNIKAKIVAEVA-----NGPVTPEADEILFEKGILQIPDFLCNAGGVTV 350 (419)
T ss_dssp -ECHHHHHHSCC-SEEEECSCSCCBCTTG-GGGCCCSEEECCS-----SSCBCHHHHHHHHHTTCEEECHHHHTTHHHHH
T ss_pred -eCHHHHHhCCC-CEEEECCCcccCCHHH-HHHhcCCEEEEee-----CCCCCcchHHHHhcCCEEEECchhhhCCccee
Confidence 79999999998 5999999999999999 6999999999887 8997644 689999999999999 6
Q ss_pred -------------CCcHHHHHHHHHHHHHHHHHHHc
Q 006864 371 -------------ASTKEAQEGVAIEIAEAVVGALR 393 (628)
Q Consensus 371 -------------~~T~ea~~~~~~~~~~~i~~~l~ 393 (628)
|.++|.++++...+.+++.++++
T Consensus 351 s~~E~~qn~~~~~w~~~ev~~~l~~~m~~~~~~~~~ 386 (419)
T 1gtm_A 351 SYFEWVQNITGYYWTIEEVRERLDKKMTKAFYDVYN 386 (419)
T ss_dssp HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeehhhhcccccccCHHHHHHHHHHHHHHHHHHHHH
Confidence 77888888888888888888773
|
| >1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=9.8e-19 Score=189.58 Aligned_cols=220 Identities=18% Similarity=0.204 Sum_probs=155.3
Q ss_pred CCHhHHHHhhcCC-cEEEe------cCCCHhHHHhh---------cCCCeEEEEcCCCCCCHHHHHhcCCcceeEEeccc
Q 006864 99 LGEAGLAILRSFG-NVECL------YDLSPEALCEK---------ISQCDALIVRSGTKVTRSVFEAANGKLKVVGRAGV 162 (628)
Q Consensus 99 l~~~~~~~l~~~~-~v~~~------~~~~~~el~~~---------~~~~d~liv~~~~~v~~~~l~~~~~~Lk~I~~~g~ 162 (628)
+.|+....|...+ +|.+. ..+++++..+. +-++|+|+.. .. ..++.++.+++++++|+..+.
T Consensus 25 ltP~~v~~L~~~G~~V~ve~~ag~~~gf~d~~y~~aGa~i~~~~~~~~adiil~v-k~-p~~~~i~~l~~~~~li~~~~~ 102 (401)
T 1x13_A 25 ATPKTVEQLLKLGFTVAVESGAGQLASFDDKAFVQAGAEIVEGNSVWQSEIILKV-NA-PLDDEIALLNPGTTLVSFIWP 102 (401)
T ss_dssp CCHHHHHHHHHTTCEEEEETTTTGGGTCCHHHHHHHTCEEECGGGGGSSSEEECS-SC-CCHHHHTTCCTTCEEEECCCG
T ss_pred CCHHHHHHHHHCCCEEEEEECCCcccCCChHHHHHCCCEEeccHHHhcCCeEEEe-CC-CCHHHHHHhcCCCcEEEEecC
Confidence 4455555554443 44432 23455554422 3338987743 22 457778877678999999999
Q ss_pred ccCcccHhHHHhcCceEEcCCCCChhhHHHHHHHHHHHHHHchhH--HHHHHHcCcccccc-ccee-----eecCCeEEE
Q 006864 163 GIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQ--ADASIKAGKWLRSK-YVGV-----SLVGKTLAV 234 (628)
Q Consensus 163 G~D~iDl~aa~~~GI~V~n~p~~~~~avAE~~l~l~L~~~R~i~~--~~~~~~~g~W~~~~-~~g~-----~l~GktiGI 234 (628)
|+|++|++++.++||.|+ +.++|+|++.++.|.+++.+.. .+..++.+.|.... +.+. ++.|++++|
T Consensus 103 ~~d~~~~~al~~~gI~v~-----~~e~v~~~~~a~~l~~l~~~a~~ag~~av~~~~~~~~~~~~~~~~~~g~l~g~~V~V 177 (401)
T 1x13_A 103 AQNPELMQKLAERNVTVM-----AMDSVPRISRAQSLDALSSMANIAGYRAIVEAAHEFGRFFTGQITAAGKVPPAKVMV 177 (401)
T ss_dssp GGCHHHHHHHHHTTCEEE-----EGGGCCCSGGGGGGCHHHHHHHHHHHHHHHHHHHHCSSCSSCEEETTEEECCCEEEE
T ss_pred CCCHHHHHHHHHCCCEEE-----EeehhhhhhhhcccchHHHHHHHHHHHHHHHHHHhcccccCCceeeccCcCCCEEEE
Confidence 999999999999999996 4566667666654333333322 23444444442111 1111 688999999
Q ss_pred EecChhHHHHHHHHHcCCCEEEEECCCCC-hhHHHHcCCccc----------------------------CHHHHhccCC
Q 006864 235 MGFGKVGSEVARRAKGLGMNVIAHDPYAP-ADKARAVGVELV----------------------------SFDQALATAD 285 (628)
Q Consensus 235 IGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~g~~~~----------------------------sl~ell~~aD 285 (628)
+|+|.||..+++.++++|++|+++|++.. .+.+.++|...+ +++++++.+|
T Consensus 178 iGaG~iG~~aa~~a~~~Ga~V~v~D~~~~~~~~~~~lGa~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~e~~~~aD 257 (401)
T 1x13_A 178 IGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSMGAEFLELDFKEEAGSGDGYAKVMSDAFIKAEMELFAAQAKEVD 257 (401)
T ss_dssp ECCSHHHHHHHHHHHHTTCEEEEECSCGGGHHHHHHTTCEECCC--------CCHHHHHHSHHHHHHHHHHHHHHHHHCS
T ss_pred ECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHcCCEEEEecccccccccccchhhccHHHHHHHHHHHHHHhCCCC
Confidence 99999999999999999999999999863 344566776543 2678889999
Q ss_pred EEEEc--CCCCccccccccHHHHhcCCCCcEEEEcC--CCchhcH
Q 006864 286 FISLH--MPLNPTTSKIFNDETFAKMKKGVRIVNVA--RGGVIDE 326 (628)
Q Consensus 286 vV~l~--~Plt~~t~~li~~~~l~~mk~gailIN~a--Rg~~vde 326 (628)
+|+.| +|.. .+..+++++.++.||+|++|||++ ||+.+++
T Consensus 258 vVI~~~~~pg~-~ap~li~~~~l~~mk~g~vIVdva~~~Gg~v~~ 301 (401)
T 1x13_A 258 IIVTTALIPGK-PAPKLITREMVDSMKAGSVIVDLAAQNGGNCEY 301 (401)
T ss_dssp EEEECCCCTTS-CCCCCBCHHHHHTSCTTCEEEETTGGGTCSBTT
T ss_pred EEEECCccCCC-CCCeeeCHHHHhcCCCCcEEEEEcCCCCCCcCc
Confidence 99999 5543 366889999999999999999999 7776654
|
| >1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=1.3e-17 Score=179.76 Aligned_cols=220 Identities=18% Similarity=0.232 Sum_probs=153.5
Q ss_pred CCHhHHHHhhcCC-cEEEe------cCCCHhHHH-----------hhcCCCeEEEEcCCCCC----CHHHHHhcCCccee
Q 006864 99 LGEAGLAILRSFG-NVECL------YDLSPEALC-----------EKISQCDALIVRSGTKV----TRSVFEAANGKLKV 156 (628)
Q Consensus 99 l~~~~~~~l~~~~-~v~~~------~~~~~~el~-----------~~~~~~d~liv~~~~~v----~~~~l~~~~~~Lk~ 156 (628)
+.|+..+.|.+.+ +|.+. ..++.++.. +.++++|+|+... .++ +++.++.+++.+++
T Consensus 18 l~P~~v~~L~~~G~~V~ve~~ag~~~~~~d~~y~~aGa~i~~~~~~~~~~adiil~v~-~p~~~~~~~~~i~~l~~~~~~ 96 (384)
T 1l7d_A 18 ISPEVVKKLVGLGFEVIVEQGAGVGASITDDALTAAGATIASTAAQALSQADVVWKVQ-RPMTAEEGTDEVALIKEGAVL 96 (384)
T ss_dssp CCHHHHHHHHHTTCEEEEETTTTGGGTCCHHHHHHTTCEEESSHHHHHSSCSEEEEEE-CCCCGGGSCCGGGGSCTTCEE
T ss_pred CCHHHHHHHHhCCCEEEEEcCCCccCCCCHHHHHHCCCEEecChhhhhcCCCEEEEec-CcccccCCHHHHHhhccCCEE
Confidence 4566666665554 44432 234555544 3567899988653 455 67888888768999
Q ss_pred EEecccccCcccHhHHHhcCceEEcCCCCChhhHHHHHHHHHHHHHHchhHHHHHHHcCcccccccc-----e-eeecCC
Q 006864 157 VGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSKYV-----G-VSLVGK 230 (628)
Q Consensus 157 I~~~g~G~D~iDl~aa~~~GI~V~n~p~~~~~avAE~~l~l~L~~~R~i~~~~~~~~~g~W~~~~~~-----g-~~l~Gk 230 (628)
|+....+.|+.|++++.++||.++|. ......++++.+. +|+..+.+ ..+..+..+.|....+. + .++.|+
T Consensus 97 i~~~~~~~~~~~~~~~~~~gi~~~~~-e~~~~~~~~~~l~-~l~~~a~~-ag~~av~~~~~~~~~~~~~~~~~~~~l~g~ 173 (384)
T 1l7d_A 97 MCHLGALTNRPVVEALTKRKITAYAM-ELMPRISRAQSMD-ILSSQSNL-AGYRAVIDGAYEFARAFPMMMTAAGTVPPA 173 (384)
T ss_dssp EEECCGGGCHHHHHHHHHTTCEEEEG-GGCCCSGGGGGGC-HHHHHHHH-HHHHHHHHHHHHCSSCSSCEEETTEEECCC
T ss_pred EEEecccCCHHHHHHHHHCCCEEEEe-ccccccccccccc-hhhHHHHH-HHHHHHHHHHHHhhhcccchhccCCCCCCC
Confidence 99999999999999999999999974 2222212222333 22222222 23344444444321111 1 478999
Q ss_pred eEEEEecChhHHHHHHHHHcCCCEEEEECCCC-ChhHHHHcCCccc---C---------------------------HHH
Q 006864 231 TLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA-PADKARAVGVELV---S---------------------------FDQ 279 (628)
Q Consensus 231 tiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~g~~~~---s---------------------------l~e 279 (628)
+++|+|+|.||+.+++.++++|++|+++|++. ..+.++++|...+ . +++
T Consensus 174 ~V~ViGaG~iG~~aa~~a~~~Ga~V~~~d~~~~~~~~~~~~Ga~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~~~~l~~ 253 (384)
T 1l7d_A 174 RVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQAEAVLK 253 (384)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHHHTTCEECCC-----------------------CCHHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEeecccccccccccccchhhcCHHHHhhhHHHHHH
Confidence 99999999999999999999999999999886 3455566776543 1 778
Q ss_pred HhccCCEEEEcC--CCCccccccccHHHHhcCCCCcEEEEcC--CCch
Q 006864 280 ALATADFISLHM--PLNPTTSKIFNDETFAKMKKGVRIVNVA--RGGV 323 (628)
Q Consensus 280 ll~~aDvV~l~~--Plt~~t~~li~~~~l~~mk~gailIN~a--Rg~~ 323 (628)
+++.+|+|+.|+ |..+ +.++++++.++.||+|++|||++ ||+.
T Consensus 254 ~~~~aDvVi~~~~~pg~~-~~~li~~~~l~~mk~g~vivdva~~~gg~ 300 (384)
T 1l7d_A 254 ELVKTDIAITTALIPGKP-APVLITEEMVTKMKPGSVIIDLAVEAGGN 300 (384)
T ss_dssp HHTTCSEEEECCCCTTSC-CCCCSCHHHHTTSCTTCEEEETTGGGTCS
T ss_pred HhCCCCEEEECCccCCCC-CCeeeCHHHHhcCCCCCEEEEEecCCCCC
Confidence 889999999877 4332 46788999999999999999998 6653
|
| >3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=1.9e-17 Score=179.51 Aligned_cols=183 Identities=20% Similarity=0.291 Sum_probs=133.3
Q ss_pred CeEEEEcCCCCCCHHHHHhcC---CcceeEE-ecccccCccc-HhHHHhcCceEEcCCCCChhhHHHHHHHHHHHHHHch
Q 006864 131 CDALIVRSGTKVTRSVFEAAN---GKLKVVG-RAGVGIDNVD-LQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNV 205 (628)
Q Consensus 131 ~d~liv~~~~~v~~~~l~~~~---~~Lk~I~-~~g~G~D~iD-l~aa~~~GI~V~n~p~~~~~avAE~~l~l~L~~~R~i 205 (628)
.+.|+ ..+..++.-+....+ ++++-+. -.++|+.... +.++.+.+|+|+|++...+....+...+..-++.+.+
T Consensus 123 p~~il-DdGgdl~~~~h~~~~~~~~~i~G~~EeTttGv~rL~~~~~~g~L~iPVinvndsvtk~~~Dn~~Gt~~slldgi 201 (436)
T 3h9u_A 123 PNMLL-DDGGDLTNYVLDECKELDGKIYGVSEETTTGVKNLYKRLQRGKLTIPAMNVNDSVTKSKFDNLYGCRESLVDGI 201 (436)
T ss_dssp CSEEE-ESSSHHHHHHHHHC-CCTTTCCCEEECSHHHHHHHHHHHHHTCCCSCEEECTTSHHHHTTHHHHHHHHHHHHHH
T ss_pred CceEe-ccccHHHHHHHHHhHHHHhhccceeeccCcChHHHHHHHHcCCCCCceEeechhhhhhhhhccccchHHHHHHH
Confidence 45444 444445554444432 2334443 3577877643 4566789999999987555554443333222222211
Q ss_pred hHHHHHHHcCcccccccceeeecCCeEEEEecChhHHHHHHHHHcCCCEEEEECCCCC-hhHHHHcCCcccCHHHHhccC
Q 006864 206 SQADASIKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAP-ADKARAVGVELVSFDQALATA 284 (628)
Q Consensus 206 ~~~~~~~~~g~W~~~~~~g~~l~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~g~~~~sl~ell~~a 284 (628)
. + ..+.++.||++||+|+|.||+.+|++|++|||+|++||++.. ...+...|+..+++++++++|
T Consensus 202 ~------r--------atg~~L~GktVgIiG~G~IG~~vA~~Lka~Ga~Viv~D~~p~~a~~A~~~G~~~~sL~eal~~A 267 (436)
T 3h9u_A 202 K------R--------ATDVMIAGKTACVCGYGDVGKGCAAALRGFGARVVVTEVDPINALQAAMEGYQVLLVEDVVEEA 267 (436)
T ss_dssp H------H--------HHCCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECCHHHHTTTC
T ss_pred H------H--------hcCCcccCCEEEEEeeCHHHHHHHHHHHHCCCEEEEECCChhhhHHHHHhCCeecCHHHHHhhC
Confidence 1 1 136789999999999999999999999999999999999752 234566788888999999999
Q ss_pred CEEEEcCCCCccccccccHHHHhcCCCCcEEEEcCCCch-hcHHHHHHH
Q 006864 285 DFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGV-IDEEALVRA 332 (628)
Q Consensus 285 DvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~~-vde~aL~~a 332 (628)
|+|++ ++.|+++|+++.|++||+|++|||++||.+ ||.++|.+.
T Consensus 268 DVVil----t~gt~~iI~~e~l~~MK~gAIVINvgRg~vEID~~~L~~~ 312 (436)
T 3h9u_A 268 HIFVT----TTGNDDIITSEHFPRMRDDAIVCNIGHFDTEIQVAWLKAN 312 (436)
T ss_dssp SEEEE----CSSCSCSBCTTTGGGCCTTEEEEECSSSGGGBCHHHHHHH
T ss_pred CEEEE----CCCCcCccCHHHHhhcCCCcEEEEeCCCCCccCHHHHHhh
Confidence 99997 456899999999999999999999999997 899998764
|
| >3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=99.68 E-value=9.8e-17 Score=173.70 Aligned_cols=155 Identities=21% Similarity=0.236 Sum_probs=117.8
Q ss_pred ecccccCccc-HhHHHhcCceEEcCCCCChhhHHHHHHHHHHHHHHchhHHHHHHHcCcccccccceeeecCCeEEEEec
Q 006864 159 RAGVGIDNVD-LQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGKTLAVMGF 237 (628)
Q Consensus 159 ~~g~G~D~iD-l~aa~~~GI~V~n~p~~~~~avAE~~l~l~L~~~R~i~~~~~~~~~g~W~~~~~~g~~l~GktiGIIGl 237 (628)
-.++|+-.+- +...-...++++|+.+ ++..+-+-......+.+..+... ..+.++.|||+||+|+
T Consensus 190 eTtTGv~rL~~m~~~g~L~~PvinVnd----s~tK~~fDn~yG~~eslvdgI~R----------atg~~L~GKTVgVIG~ 255 (464)
T 3n58_A 190 ETTTGVNRLYQLQKKGLLPFPAINVND----SVTKSKFDNKYGCKESLVDGIRR----------GTDVMMAGKVAVVCGY 255 (464)
T ss_dssp CSHHHHHHHHHHHHHTCCCSCEEECTT----SHHHHTTHHHHHHHHHHHHHHHH----------HHCCCCTTCEEEEECC
T ss_pred ccccchHHHHHHHHcCCCCCCEEeecc----HhhhhhhhhhhcchHHHHHHHHH----------hcCCcccCCEEEEECc
Confidence 3577776642 2333345678888754 45555554444444433322211 1367899999999999
Q ss_pred ChhHHHHHHHHHcCCCEEEEECCCCC-hhHHHHcCCcccCHHHHhccCCEEEEcCCCCccccccccHHHHhcCCCCcEEE
Q 006864 238 GKVGSEVARRAKGLGMNVIAHDPYAP-ADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIV 316 (628)
Q Consensus 238 G~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~g~~~~sl~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailI 316 (628)
|.||+.+|++|++|||+|+++|+... ...+...|++.+++++++++||+|+++. .|+++|+++.|++||+|++||
T Consensus 256 G~IGr~vA~~lrafGa~Viv~d~dp~~a~~A~~~G~~vv~LeElL~~ADIVv~at----gt~~lI~~e~l~~MK~GAILI 331 (464)
T 3n58_A 256 GDVGKGSAQSLAGAGARVKVTEVDPICALQAAMDGFEVVTLDDAASTADIVVTTT----GNKDVITIDHMRKMKDMCIVG 331 (464)
T ss_dssp SHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHTTCEECCHHHHGGGCSEEEECC----SSSSSBCHHHHHHSCTTEEEE
T ss_pred CHHHHHHHHHHHHCCCEEEEEeCCcchhhHHHhcCceeccHHHHHhhCCEEEECC----CCccccCHHHHhcCCCCeEEE
Confidence 99999999999999999999987642 2344567888889999999999999864 478999999999999999999
Q ss_pred EcCCCch-hcHHHHHH
Q 006864 317 NVARGGV-IDEEALVR 331 (628)
Q Consensus 317 N~aRg~~-vde~aL~~ 331 (628)
|++||.+ +|.++|.+
T Consensus 332 NvGRgdvEID~~aL~~ 347 (464)
T 3n58_A 332 NIGHFDNEIQVAALRN 347 (464)
T ss_dssp ECSSSTTTBTCGGGTT
T ss_pred EcCCCCcccCHHHHHh
Confidence 9999998 89988764
|
| >1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1 | Back alignment and structure |
|---|
Probab=99.65 E-value=8.7e-18 Score=182.25 Aligned_cols=210 Identities=17% Similarity=0.172 Sum_probs=164.6
Q ss_pred cceeEEecccccCcccHhHHH-----hcCceEEcCCCCChhhHHHHHHHHHHHHHHchhHHHHHHHcCccccc----ccc
Q 006864 153 KLKVVGRAGVGIDNVDLQAAT-----EFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRS----KYV 223 (628)
Q Consensus 153 ~Lk~I~~~g~G~D~iDl~aa~-----~~GI~V~n~p~~~~~avAE~~l~l~L~~~R~i~~~~~~~~~g~W~~~----~~~ 223 (628)
.+++|.+.|+|+|++++.++. ++++.++|.+|+ ...++++.+.+++.+.|++...... ..+.|.-. ...
T Consensus 81 a~~~i~~v~~Glds~~vGe~~Il~qvk~~~~~~~~~G~-~~~~~~~~~~~a~~~~k~v~~~~~~-~~~~~s~a~~av~~a 158 (404)
T 1gpj_A 81 AVRHLFRVASGLESMMVGEQEILRQVKKAYDRAARLGT-LDEALKIVFRRAINLGKRAREETRI-SEGAVSIGSAAVELA 158 (404)
T ss_dssp HHHHHHHHHTTTTSSSTTCHHHHHHHHHHHHHHHHHTC-CCHHHHHHHHHHHHHHHHHHHHSST-TCSCCSHHHHHHHHH
T ss_pred HhhhheeeccCCCCCcCCcchhHHHHHHHHHHHHHcCC-chHHHHHHHHHHhhhhccCcchhhh-cCCCccHHHHHHHHH
Confidence 688999999999999999998 899999999988 5789999999999999998766433 34555321 011
Q ss_pred e---eeecCCeEEEEecChhHHHHHHHHHcCCC-EEEEECCCCCh--hHHHHcCCcc---cCHHHHhccCCEEEEcCCCC
Q 006864 224 G---VSLVGKTLAVMGFGKVGSEVARRAKGLGM-NVIAHDPYAPA--DKARAVGVEL---VSFDQALATADFISLHMPLN 294 (628)
Q Consensus 224 g---~~l~GktiGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~~~--~~a~~~g~~~---~sl~ell~~aDvV~l~~Plt 294 (628)
. .++.|++++|||+|.||+.+++.|+++|+ +|+++|+.... +.+..+|... .++.+++.++|+|+.|+|.
T Consensus 159 ~~~~~~l~g~~VlIiGaG~iG~~~a~~l~~~G~~~V~v~~r~~~ra~~la~~~g~~~~~~~~l~~~l~~aDvVi~at~~- 237 (404)
T 1gpj_A 159 ERELGSLHDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDLGGEAVRFDELVDHLARSDVVVSATAA- 237 (404)
T ss_dssp HHHHSCCTTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHHTCEECCGGGHHHHHHTCSEEEECCSS-
T ss_pred HHHhccccCCEEEEEChHHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCceecHHhHHHHhcCCCEEEEccCC-
Confidence 1 14789999999999999999999999999 99999997532 3445567543 3678888999999999874
Q ss_pred ccccccccHHHHhc--CC----CCcEEEEcCCCchhcHHHHHHHHhCCCeeEEEeeccCCCCCCCCCccccCCcEEE--c
Q 006864 295 PTTSKIFNDETFAK--MK----KGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTV--T 366 (628)
Q Consensus 295 ~~t~~li~~~~l~~--mk----~gailIN~aRg~~vde~aL~~aL~~g~i~ga~lDV~~~EP~~~~~~L~~~~nvil--T 366 (628)
+..+++++.++. || ++.++||++ +|.+.+++++++|||++ +
T Consensus 238 --~~~~~~~~~l~~~~lk~r~~~~~v~vdia-----------------------------~P~~i~~~l~~l~~v~l~d~ 286 (404)
T 1gpj_A 238 --PHPVIHVDDVREALRKRDRRSPILIIDIA-----------------------------NPRDVEEGVENIEDVEVRTI 286 (404)
T ss_dssp --SSCCBCHHHHHHHHHHCSSCCCEEEEECC-----------------------------SSCSBCTTGGGSTTEEEEEH
T ss_pred --CCceecHHHHHHHHHhccCCCCEEEEEcc-----------------------------CCCCCCccccccCCeEEEeH
Confidence 356778888876 43 556677665 36555788999999999 9
Q ss_pred CCCCCCcHHHHH----------HHHHHHHHHHHHHHcCCC
Q 006864 367 PHLGASTKEAQE----------GVAIEIAEAVVGALRGEL 396 (628)
Q Consensus 367 PHig~~T~ea~~----------~~~~~~~~~i~~~l~g~~ 396 (628)
||+++.+.++++ .+..+.++++..|+.+..
T Consensus 287 d~l~~~~~~~~~~r~~~~~~~~~li~q~~~~f~~w~~~~~ 326 (404)
T 1gpj_A 287 DDLRVIARENLERRRKEIPKVEKLIEEELSTVEEELEKLK 326 (404)
T ss_dssp HHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999998765 555666778888887654
|
| >3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=2.6e-15 Score=162.38 Aligned_cols=159 Identities=19% Similarity=0.273 Sum_probs=115.6
Q ss_pred cceeEE-ecccccCccc-HhHHHhcCceEEcCCCCChhhHHHHHHHHHHHHHHchhHHHHHHHcCcccccccceeeecCC
Q 006864 153 KLKVVG-RAGVGIDNVD-LQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGK 230 (628)
Q Consensus 153 ~Lk~I~-~~g~G~D~iD-l~aa~~~GI~V~n~p~~~~~avAE~~l~l~L~~~R~i~~~~~~~~~g~W~~~~~~g~~l~Gk 230 (628)
+++-+. -..+|+-.+- +...-+..++|+|+.+..+..--+. .......+..+.. + ..+..+.||
T Consensus 156 ~i~G~~EeTttGv~rl~~~~~~g~L~~Pvi~vnds~tK~~fDn----~yGt~~s~~~gi~--r--------at~~~L~Gk 221 (435)
T 3gvp_A 156 KIKGIVEESVTGVHRLYQLSKAGKLCVPAMNVNDSVTKQKFDN----LYCCRESILDGLK--R--------TTDMMFGGK 221 (435)
T ss_dssp TCCEEEECCHHHHHHHTCC--CCCCCSCEEECTTCHHHHHHHT----HHHHHHHHHHHHH--H--------HHCCCCTTC
T ss_pred hcceeEeccchhHHHHHHHHHcCCCCCCEEEecchhhhhhhhh----hhhhHHHHHHHHH--H--------hhCceecCC
Confidence 344442 3567776542 2334467799999987555443332 1111111111110 0 135789999
Q ss_pred eEEEEecChhHHHHHHHHHcCCCEEEEECCCC-ChhHHHHcCCcccCHHHHhccCCEEEEcCCCCccccccccHHHHhcC
Q 006864 231 TLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA-PADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKM 309 (628)
Q Consensus 231 tiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~g~~~~sl~ell~~aDvV~l~~Plt~~t~~li~~~~l~~m 309 (628)
+++|+|+|.||+.+|++|++|||+|+++|+.. ....+...|++..++++++++||+|++| +.|+++|+++.|+.|
T Consensus 222 tV~ViG~G~IGk~vA~~Lra~Ga~Viv~D~dp~ra~~A~~~G~~v~~Leeal~~ADIVi~a----tgt~~lI~~e~l~~M 297 (435)
T 3gvp_A 222 QVVVCGYGEVGKGCCAALKAMGSIVYVTEIDPICALQACMDGFRLVKLNEVIRQVDIVITC----TGNKNVVTREHLDRM 297 (435)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECCHHHHTTTCSEEEEC----SSCSCSBCHHHHHHS
T ss_pred EEEEEeeCHHHHHHHHHHHHCCCEEEEEeCChhhhHHHHHcCCEeccHHHHHhcCCEEEEC----CCCcccCCHHHHHhc
Confidence 99999999999999999999999999999864 2334566788788999999999999995 567899999999999
Q ss_pred CCCcEEEEcCCCch-hcHHHH
Q 006864 310 KKGVRIVNVARGGV-IDEEAL 329 (628)
Q Consensus 310 k~gailIN~aRg~~-vde~aL 329 (628)
|+|++|||++||.. +|.++|
T Consensus 298 K~gailINvgrg~~EId~~~L 318 (435)
T 3gvp_A 298 KNSCIVCNMGHSNTEIDVASL 318 (435)
T ss_dssp CTTEEEEECSSTTTTBTGGGG
T ss_pred CCCcEEEEecCCCccCCHHHH
Confidence 99999999999998 677665
|
| >3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=3.9e-15 Score=156.25 Aligned_cols=237 Identities=18% Similarity=0.133 Sum_probs=162.7
Q ss_pred eecCCeEEEEecChhHHHHHHHHHcCCC--EEEEECCCC-ChhHHHHcCC--c-ccCHHH-HhccCCEEEEcCCCCcccc
Q 006864 226 SLVGKTLAVMGFGKVGSEVARRAKGLGM--NVIAHDPYA-PADKARAVGV--E-LVSFDQ-ALATADFISLHMPLNPTTS 298 (628)
Q Consensus 226 ~l~GktiGIIGlG~IG~~vA~~l~~~G~--~V~~~d~~~-~~~~a~~~g~--~-~~sl~e-ll~~aDvV~l~~Plt~~t~ 298 (628)
++..++|||||+|.||+.+|+.|+..|+ +|++||+.. ..+.+.+.|+ . ..++++ ++++||+|++|+|... +.
T Consensus 30 ~~~~~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a~~~G~~~~~~~~~~~~~~~~aDvVilavp~~~-~~ 108 (314)
T 3ggo_A 30 SLSMQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLSSPVRT-FR 108 (314)
T ss_dssp CCSCSEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCTTGGGGGCCSEEEECSCGGG-HH
T ss_pred hcCCCEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHCCCcchhcCCHHHHhhccCCEEEEeCCHHH-HH
Confidence 3445899999999999999999999999 999999985 3345566776 2 247888 8999999999999553 34
Q ss_pred ccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhCCCeeEEEeeccCCC---CCCCCCccccCCcEEEcCCCCCCcHH
Q 006864 299 KIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEE---PPAKDSKLVQHENVTVTPHLGASTKE 375 (628)
Q Consensus 299 ~li~~~~l~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~ga~lDV~~~E---P~~~~~~L~~~~nvilTPHig~~T~e 375 (628)
.++ ++....++++++|++++..+....+++.+.+.. ++.+. --++..| |..+...||....+++||+-+.. .+
T Consensus 109 ~vl-~~l~~~l~~~~iv~d~~Svk~~~~~~~~~~l~~-~~v~~-hPm~G~e~sG~~~A~~~Lf~g~~~il~~~~~~~-~~ 184 (314)
T 3ggo_A 109 EIA-KKLSYILSEDATVTDQGSVKGKLVYDLENILGK-RFVGG-HPIAGTEKSGVEYSLDNLYEGKKVILTPTKKTD-KK 184 (314)
T ss_dssp HHH-HHHHHHSCTTCEEEECCSCCTHHHHHHHHHHGG-GEECE-EECCCCCCCSGGGCCTTTTTTCEEEECCCTTSC-HH
T ss_pred HHH-HHHhhccCCCcEEEECCCCcHHHHHHHHHhcCC-CEEec-CcccCCcccchhhhhhhhhcCCEEEEEeCCCCC-HH
Confidence 444 556667999999999998887667777777755 44321 1244433 32345678999999999996554 33
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCCcccCCCCCcccccccc------cHHHHHHHHhHH----------HHHHhcCCCCce
Q 006864 376 AQEGVAIEIAEAVVGALRGELSATAINAPMVPSEVLSELA------PYVVLAKKLGRL----------AVQLVSGGSGIK 439 (628)
Q Consensus 376 a~~~~~~~~~~~i~~~l~g~~~~~~vn~p~~~~~~~~~~~------p~~~lAerlG~l----------a~qL~~g~~~~~ 439 (628)
+ .+.+.++++.-.. .++ .+.++.++.+- |++. +.-++.. +.+++++ +|+
T Consensus 185 ~--------~~~v~~l~~~~G~-~v~---~~~~~~hD~~~a~~s~lph~~-a~~l~~~~~~~~~~~~~~~~~a~~--~fr 249 (314)
T 3ggo_A 185 R--------LKLVKRVWEDVGG-VVE---YMSPELHDYVFGVVSHLPHAV-AFALVDTLIHMSTPEVDLFKYPGG--GFK 249 (314)
T ss_dssp H--------HHHHHHHHHHTTC-EEE---ECCHHHHHHHHHHHTHHHHHH-HHHHHHHHHHHCCSSCCGGGCCTT--TTT
T ss_pred H--------HHHHHHHHHHcCC-EEE---EcCHHHHHHHHHHHHHHHHHH-HHHHHHHHHhcCcchHHHHhhccc--cHH
Confidence 2 2333333332121 111 35667776544 4332 2222222 2345666 899
Q ss_pred EEEEEEeecCCCCCCCcccchHHHHHhhccccccCcccccchHh
Q 006864 440 SVKLIYRSARDPDDLDTRILRAMITKGIIEPISASFINLVNADF 483 (628)
Q Consensus 440 ~v~i~~~Gs~a~~~~~~~~~~~a~l~GlL~~~~~~~vnlvNA~~ 483 (628)
++++++.+++. +|.+....|+..+...|+.+.++...+.++..
T Consensus 250 d~tRia~~~p~-~w~di~~~N~~~~~~~l~~~~~~l~~l~~~l~ 292 (314)
T 3ggo_A 250 DFTRIAKSDPI-MWRDIFLENKENVMKAIEGFEKSLNHLKELIV 292 (314)
T ss_dssp THHHHTTSCHH-HHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCHH-HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998 99999999998877778777766556665554
|
| >3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.44 E-value=4.7e-15 Score=157.33 Aligned_cols=242 Identities=12% Similarity=0.064 Sum_probs=156.6
Q ss_pred CCeEEEEecChhHHHHHHHHHcCCCEEEEECCCC-ChhHHHHcCCcc-cCHHHHhcc----CCEEEEcCCCCcccccccc
Q 006864 229 GKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA-PADKARAVGVEL-VSFDQALAT----ADFISLHMPLNPTTSKIFN 302 (628)
Q Consensus 229 GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~g~~~-~sl~ell~~----aDvV~l~~Plt~~t~~li~ 302 (628)
-++|||||+|.||+++|+.|+..|++|++||++. ..+.+.+.|+.. .++++++++ ||+|++|+|. ..+..++
T Consensus 8 ~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~~~~~~a~~~G~~~~~~~~e~~~~a~~~aDlVilavP~-~~~~~vl- 85 (341)
T 3ktd_A 8 SRPVCILGLGLIGGSLLRDLHAANHSVFGYNRSRSGAKSAVDEGFDVSADLEATLQRAAAEDALIVLAVPM-TAIDSLL- 85 (341)
T ss_dssp SSCEEEECCSHHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHTTCCEESCHHHHHHHHHHTTCEEEECSCH-HHHHHHH-
T ss_pred CCEEEEEeecHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeeeCCHHHHHHhcccCCCEEEEeCCH-HHHHHHH-
Confidence 3689999999999999999999999999999875 334566778754 478888765 6999999994 3455555
Q ss_pred HHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhCCCeeEEEeeccCCC---CCCCCCccccCCcEEEcCCCCCCcHHHHHH
Q 006864 303 DETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEE---PPAKDSKLVQHENVTVTPHLGASTKEAQEG 379 (628)
Q Consensus 303 ~~~l~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~ga~lDV~~~E---P~~~~~~L~~~~nvilTPHig~~T~ea~~~ 379 (628)
+.+..++++++|+|++..+....+++.+.+...++.+. --+++.| |..++..||...++++||+-+......+ .
T Consensus 86 -~~l~~~~~~~iv~Dv~Svk~~i~~~~~~~~~~~~~v~~-HPmaG~e~sG~~aa~~~Lf~g~~~iltp~~~~~~e~~~-~ 162 (341)
T 3ktd_A 86 -DAVHTHAPNNGFTDVVSVKTAVYDAVKARNMQHRYVGS-HPMAGTANSGWSASMDGLFKRAVWVVTFDQLFDGTDIN-S 162 (341)
T ss_dssp -HHHHHHCTTCCEEECCSCSHHHHHHHHHTTCGGGEECE-EECCSCC-CCGGGCCSSTTTTCEEEECCGGGTSSCCCC-H
T ss_pred -HHHHccCCCCEEEEcCCCChHHHHHHHHhCCCCcEecC-CccccccccchhhhhhHHhcCCeEEEEeCCCCChhhhc-c
Confidence 23444699999999998877655666655532223221 1234433 2234567999999999998654422000 0
Q ss_pred HHHHHHHHHHHHHcCCCCCCcccCCCCCcccccccc------cHHHHH---HH---HhHHHHHHhcCCCCceEEEEEEee
Q 006864 380 VAIEIAEAVVGALRGELSATAINAPMVPSEVLSELA------PYVVLA---KK---LGRLAVQLVSGGSGIKSVKLIYRS 447 (628)
Q Consensus 380 ~~~~~~~~i~~~l~g~~~~~~vn~p~~~~~~~~~~~------p~~~lA---er---lG~la~qL~~g~~~~~~v~i~~~G 447 (628)
......+.+..+++.-.. .++ .+.++.+|.+- |++... .. -...+.+|+++ +|++++++..+
T Consensus 163 ~~~~~~~~v~~l~~~~Ga-~v~---~~~~~~HD~~~A~vshlPh~ia~aL~~~~~~~~~~~~~laa~--gfrd~tRia~s 236 (341)
T 3ktd_A 163 TWISIWKDVVQMALAVGA-EVV---PSRVGPHDAAAARVSHLTHILAETLAIVGDNGGALSLSLAAG--SYRDSTRVAGT 236 (341)
T ss_dssp HHHHHHHHHHHHHHHTTC-EEE---ECCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTHHHHHHHCCH--HHHHHTGGGGS
T ss_pred chHHHHHHHHHHHHHcCC-EEE---EeCHHHHHHHHHHHhHHHHHHHHHHHHHhhcchHHHHHHccc--cHHHHHHHhcC
Confidence 011123334444432221 111 35666776654 433211 11 11234567777 89999999999
Q ss_pred cCCCCCCCcccchHHHHHhhccccccCcccccchH
Q 006864 448 ARDPDDLDTRILRAMITKGIIEPISASFINLVNAD 482 (628)
Q Consensus 448 s~a~~~~~~~~~~~a~l~GlL~~~~~~~vnlvNA~ 482 (628)
++. +|.+....|+..+...|+.+.++...+.++.
T Consensus 237 ~p~-lw~di~~~N~~~~~~~l~~~~~~L~~l~~~l 270 (341)
T 3ktd_A 237 DPG-LVRAMCESNAGPLVKALDEALAILHEAREGL 270 (341)
T ss_dssp CHH-HHHHHHHHTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHH-HHHHHHHhCHHHHHHHHHHHHHHHHHHHHHH
Confidence 998 9999999999777667766666544555444
|
| >2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.30 E-value=1.3e-11 Score=126.25 Aligned_cols=213 Identities=16% Similarity=0.143 Sum_probs=134.0
Q ss_pred CeEEEEecChhHHHHHHHHHcCCC--EEEEECCCCC-hhHHHHcCCc---ccCHHHHhc-cCCEEEEcCCCCcccccccc
Q 006864 230 KTLAVMGFGKVGSEVARRAKGLGM--NVIAHDPYAP-ADKARAVGVE---LVSFDQALA-TADFISLHMPLNPTTSKIFN 302 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~G~--~V~~~d~~~~-~~~a~~~g~~---~~sl~ell~-~aDvV~l~~Plt~~t~~li~ 302 (628)
++|||||+|.||+.+|+.|+..|+ +|++||+... .+.+.+.|+. ..+++++++ +||+|++|+|.. .+..++.
T Consensus 2 ~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~aDvVilavp~~-~~~~v~~ 80 (281)
T 2g5c_A 2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLSSPVR-TFREIAK 80 (281)
T ss_dssp CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCGGGGGGTCCSEEEECSCHH-HHHHHHH
T ss_pred cEEEEEecCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHCCCcccccCCHHHHhcCCCCEEEEcCCHH-HHHHHHH
Confidence 589999999999999999999998 9999998752 2344556764 237888999 999999999954 3455543
Q ss_pred HHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhCCCeeEEEeeccCCC---CCCCCCccccCCcEEEcCCCCCCcHHHHHH
Q 006864 303 DETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEE---PPAKDSKLVQHENVTVTPHLGASTKEAQEG 379 (628)
Q Consensus 303 ~~~l~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~ga~lDV~~~E---P~~~~~~L~~~~nvilTPHig~~T~ea~~~ 379 (628)
+....++++++|++++++.....+.+.+.+..+.+.+ .-++..| |..+...|+...+++++||.++.. +.
T Consensus 81 -~l~~~l~~~~iv~~~~~~~~~~~~~l~~~l~~~~v~~--~p~~~~~~~gp~~a~~~l~~g~~~~~~~~~~~~~-~~--- 153 (281)
T 2g5c_A 81 -KLSYILSEDATVTDQGSVKGKLVYDLENILGKRFVGG--HPIAGTEKSGVEYSLDNLYEGKKVILTPTKKTDK-KR--- 153 (281)
T ss_dssp -HHHHHSCTTCEEEECCSCCTHHHHHHHHHHGGGEECE--EEECCCSCCSGGGCCSSTTTTCEEEECCCSSSCH-HH---
T ss_pred -HHHhhCCCCcEEEECCCCcHHHHHHHHHhccccceee--ccccCCccCChhhhhhHHhCCCCEEEecCCCCCH-HH---
Confidence 4556789999999999988877788888887642211 2234433 333455788888999999987763 22
Q ss_pred HHHHHHHHHHHHHcCCCCCCcccCCCCCcccccccc------c-H--HHHHHHHhH------HHHHHhcCCCCceEEEEE
Q 006864 380 VAIEIAEAVVGALRGELSATAINAPMVPSEVLSELA------P-Y--VVLAKKLGR------LAVQLVSGGSGIKSVKLI 444 (628)
Q Consensus 380 ~~~~~~~~i~~~l~g~~~~~~vn~p~~~~~~~~~~~------p-~--~~lAerlG~------la~qL~~g~~~~~~v~i~ 444 (628)
.+.+.++++.-... ++ .+..+.++.+. | | ..+.+.++. .+..|+++ +++++...
T Consensus 154 -----~~~v~~l~~~~g~~-~~---~~~~~~~d~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~r~ 222 (281)
T 2g5c_A 154 -----LKLVKRVWEDVGGV-VE---YMSPELHDYVFGVVSHLPHAVAFALVDTLIHMSTPEVDLFKYPGG--GFKDFTRI 222 (281)
T ss_dssp -----HHHHHHHHHHTTCE-EE---ECCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCBTTBCGGGCCTT--TGGGC---
T ss_pred -----HHHHHHHHHHcCCE-EE---EcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHhhccc--cHHHHhHH
Confidence 23333444322211 11 12223332211 2 1 123333332 12345545 78777777
Q ss_pred EeecCCCCCCCcccchHH
Q 006864 445 YRSARDPDDLDTRILRAM 462 (628)
Q Consensus 445 ~~Gs~a~~~~~~~~~~~a 462 (628)
..+++. .|.+...++..
T Consensus 223 ~~~~p~-~~~~~~~sn~~ 239 (281)
T 2g5c_A 223 AKSDPI-MWRDIFLENKE 239 (281)
T ss_dssp CCSCHH-HHHHHHHHTHH
T ss_pred hcCCHH-HHHHHHHHCHH
Confidence 666665 66666666664
|
| >1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB: 1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=2.6e-11 Score=128.96 Aligned_cols=109 Identities=24% Similarity=0.336 Sum_probs=93.6
Q ss_pred ee-eecCCeEEEEecChhHHHHHHHHHcCCCEEEEECCCCC-hhHHHHcCCcccCHHHHhc-cCCEEEEcCCCCcccccc
Q 006864 224 GV-SLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAP-ADKARAVGVELVSFDQALA-TADFISLHMPLNPTTSKI 300 (628)
Q Consensus 224 g~-~l~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~g~~~~sl~ell~-~aDvV~l~~Plt~~t~~l 300 (628)
|. ++.|||++|+|+|+||+.+|++|+++||+|+++|++.. .+.+...+++.+++++++. +||+++-| .+.++
T Consensus 169 G~~~L~GktV~I~G~GnVG~~~A~~l~~~GakVvvsD~~~~~~~~a~~~ga~~v~~~ell~~~~DIliP~-----A~~~~ 243 (355)
T 1c1d_A 169 GLGSLDGLTVLVQGLGAVGGSLASLAAEAGAQLLVADTDTERVAHAVALGHTAVALEDVLSTPCDVFAPC-----AMGGV 243 (355)
T ss_dssp TCCCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECCGGGGGGCCCSEEEEC-----SCSCC
T ss_pred CCCCCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEEeCCccHHHHHHhcCCEEeChHHhhcCccceecHh-----HHHhh
Confidence 55 79999999999999999999999999999999998743 2334556777888899998 99999753 57899
Q ss_pred ccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhCCCee
Q 006864 301 FNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVA 339 (628)
Q Consensus 301 i~~~~l~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~ 339 (628)
|+++.++.|| ..+|+|++|+.+.++++ .++|+++.+.
T Consensus 244 I~~~~~~~lk-~~iVie~AN~p~t~~eA-~~~L~~~gIl 280 (355)
T 1c1d_A 244 ITTEVARTLD-CSVVAGAANNVIADEAA-SDILHARGIL 280 (355)
T ss_dssp BCHHHHHHCC-CSEECCSCTTCBCSHHH-HHHHHHTTCE
T ss_pred cCHHHHhhCC-CCEEEECCCCCCCCHHH-HHHHHhCCEE
Confidence 9999999998 78999999999999888 5888887764
|
| >3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str} | Back alignment and structure |
|---|
Probab=99.24 E-value=4.5e-10 Score=120.26 Aligned_cols=210 Identities=15% Similarity=0.136 Sum_probs=132.5
Q ss_pred CCHhHHHHhhcCC-cEEEec------CCCHhHHHhh---c---CCCeEEEEcCCCCCCHHHHHhcCCcceeEEecccccC
Q 006864 99 LGEAGLAILRSFG-NVECLY------DLSPEALCEK---I---SQCDALIVRSGTKVTRSVFEAANGKLKVVGRAGVGID 165 (628)
Q Consensus 99 l~~~~~~~l~~~~-~v~~~~------~~~~~el~~~---~---~~~d~liv~~~~~v~~~~l~~~~~~Lk~I~~~g~G~D 165 (628)
+.|+..+.|.+.+ +|.+.. .+++++..+. + -.+|.|+- - ...+.+.++...++-.+++..---.|
T Consensus 40 ltP~~v~~L~~~G~~V~VE~gaG~~~~f~D~~Y~~aGa~i~~~~~adiIlk-V-k~p~~~e~~~l~~g~~l~~~lh~~~~ 117 (381)
T 3p2y_A 40 LVPKVVEKLSARGLEVVVESAAGAGALFSDADYERAGATIGDPWPADVVVK-V-NPPTSDEISQLKPGSVLIGFLAPRTQ 117 (381)
T ss_dssp SCHHHHHHHHHTTCEEEECTTTTGGGTCCHHHHHHTTCEESCCTTSSEEEC-S-SCCCHHHHTTSCTTCEEEECCCTTTC
T ss_pred CCHHHHHHHHhCCCEEEEeCCCCccCCCChHHHHHCCCEEeeeecCCEEEE-e-CCCChhHHhhccCCCEEEEEeccccC
Confidence 4567777776554 555543 2455555331 1 12676652 1 23556667766666777766555445
Q ss_pred cccHhHHHhcCceEEcCCCCC----hh------hHHHHHHHHHHHHHHchhHHHHHHHcCcccccccce-eeecCCeEEE
Q 006864 166 NVDLQAATEFGCLVVNAPIAN----TV------AAAEHGIALLASMARNVSQADASIKAGKWLRSKYVG-VSLVGKTLAV 234 (628)
Q Consensus 166 ~iDl~aa~~~GI~V~n~p~~~----~~------avAE~~l~l~L~~~R~i~~~~~~~~~g~W~~~~~~g-~~l~GktiGI 234 (628)
.=-++++.++||...---... +. +++|.+= .+-+..+.+. -++.......+ ..+.+++++|
T Consensus 118 ~~l~~~l~~~~it~ia~E~i~~~~~~~~l~~l~~~s~iAG------y~Av~~aa~~--l~~~~~~l~~~~~~v~~~kV~V 189 (381)
T 3p2y_A 118 PELASRLRIADVTAFAMESIPRISRAQTMDALSSQANVAG------YKAVLLGASL--STRFVPMLTTAAGTVKPASALV 189 (381)
T ss_dssp HHHHHHHHHTTCEEEEGGGCCSSGGGGGGCHHHHHHHHHH------HHHHHHHHHH--CSSCSSCEECSSCEECCCEEEE
T ss_pred HHHHHHHHHCCCeEEEeeccccccccccceeecchhHHHH------HHHHHHHHHH--hhhhhhhhhcccCCcCCCEEEE
Confidence 444688899999885322221 11 2222221 1111111111 11111100011 2578999999
Q ss_pred EecChhHHHHHHHHHcCCCEEEEECCCCC-hhHHHHcCCccc--------------------------CHHHHhccCCEE
Q 006864 235 MGFGKVGSEVARRAKGLGMNVIAHDPYAP-ADKARAVGVELV--------------------------SFDQALATADFI 287 (628)
Q Consensus 235 IGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~g~~~~--------------------------sl~ell~~aDvV 287 (628)
||+|.||..+|+.++++|++|++||++.. .+.+.++|.+++ ++++++++||+|
T Consensus 190 iG~G~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~~~lGa~~~~l~~~~~~~~gya~~~~~~~~~~~~~~l~e~l~~aDIV 269 (381)
T 3p2y_A 190 LGVGVAGLQALATAKRLGAKTTGYDVRPEVAEQVRSVGAQWLDLGIDAAGEGGYARELSEAERAQQQQALEDAITKFDIV 269 (381)
T ss_dssp ESCSHHHHHHHHHHHHHTCEEEEECSSGGGHHHHHHTTCEECCCC-------------CHHHHHHHHHHHHHHHTTCSEE
T ss_pred ECchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEeccccccccccchhhhhHHHHhhhHHHHHHHHhcCCEE
Confidence 99999999999999999999999999863 345566665432 467899999999
Q ss_pred EEcC--CCCccccccccHHHHhcCCCCcEEEEcC
Q 006864 288 SLHM--PLNPTTSKIFNDETFAKMKKGVRIVNVA 319 (628)
Q Consensus 288 ~l~~--Plt~~t~~li~~~~l~~mk~gailIN~a 319 (628)
+.++ |.. .+..+++++.++.||+|++|||++
T Consensus 270 I~tv~iPg~-~ap~Lvt~emv~~MkpGsVIVDvA 302 (381)
T 3p2y_A 270 ITTALVPGR-PAPRLVTAAAATGMQPGSVVVDLA 302 (381)
T ss_dssp EECCCCTTS-CCCCCBCHHHHHTSCTTCEEEETT
T ss_pred EECCCCCCc-ccceeecHHHHhcCCCCcEEEEEe
Confidence 9875 542 356789999999999999999997
|
| >4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=99.22 E-value=1.2e-11 Score=129.61 Aligned_cols=131 Identities=17% Similarity=0.163 Sum_probs=93.6
Q ss_pred HHHHHcCcccccccc-----eeeecCCeEEEEecChhHHHHHHHHHcCCCEEEEECCCCC-hhHHHHcCCccc-CHHHHh
Q 006864 209 DASIKAGKWLRSKYV-----GVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAP-ADKARAVGVELV-SFDQAL 281 (628)
Q Consensus 209 ~~~~~~g~W~~~~~~-----g~~l~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~g~~~~-sl~ell 281 (628)
++.++...|..+.+. ......++|||||+|.||+.+|+.|...|++|.+||+... .+...+.|+... ++++++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~~~~e~~ 85 (320)
T 4dll_A 6 HHSSGVDLGTENLYFQSMTVESDPYARKITFLGTGSMGLPMARRLCEAGYALQVWNRTPARAASLAALGATIHEQARAAA 85 (320)
T ss_dssp -----------------------CCCSEEEEECCTTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTTCEEESSHHHHH
T ss_pred cccccccccccccceechhhccccCCCEEEEECccHHHHHHHHHHHhCCCeEEEEcCCHHHHHHHHHCCCEeeCCHHHHH
Confidence 345566666554321 1234567999999999999999999999999999998753 233444576654 899999
Q ss_pred ccCCEEEEcCCCCccccccccH-HHHhcCCCCcEEEEcCCCchhcHHHHHHHHhCCCee
Q 006864 282 ATADFISLHMPLNPTTSKIFND-ETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVA 339 (628)
Q Consensus 282 ~~aDvV~l~~Plt~~t~~li~~-~~l~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~ 339 (628)
++||+|++|+|....++.++.. +.+..++++.++||++++...+.+.+.+.+++..+.
T Consensus 86 ~~aDvVi~~vp~~~~~~~v~~~~~~~~~l~~~~~vi~~st~~~~~~~~~~~~~~~~g~~ 144 (320)
T 4dll_A 86 RDADIVVSMLENGAVVQDVLFAQGVAAAMKPGSLFLDMASITPREARDHAARLGALGIA 144 (320)
T ss_dssp TTCSEEEECCSSHHHHHHHHTTTCHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCE
T ss_pred hcCCEEEEECCCHHHHHHHHcchhHHhhCCCCCEEEecCCCCHHHHHHHHHHHHHcCCE
Confidence 9999999999976666666543 566779999999999999999999999998876553
|
| >3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=99.20 E-value=1.7e-11 Score=127.79 Aligned_cols=126 Identities=17% Similarity=0.105 Sum_probs=99.2
Q ss_pred eeecCCeEEEEecChhHHHHHHHHHcCCCEEEEECCCCC-hhHHHHcCCccc-CHHHHhccCCEEEEcCCCCcccccccc
Q 006864 225 VSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAP-ADKARAVGVELV-SFDQALATADFISLHMPLNPTTSKIFN 302 (628)
Q Consensus 225 ~~l~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~g~~~~-sl~ell~~aDvV~l~~Plt~~t~~li~ 302 (628)
.++..++|||||+|.||+.+|++|...|++|.+||+... .+...+.|+... ++++++++||+|++++|....++.++.
T Consensus 5 ~~~~~~~IgiIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~aDvVi~~vp~~~~~~~v~~ 84 (306)
T 3l6d_A 5 DESFEFDVSVIGLGAMGTIMAQVLLKQGKRVAIWNRSPGKAAALVAAGAHLCESVKAALSASPATIFVLLDNHATHEVLG 84 (306)
T ss_dssp CCCCSCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTCEECSSHHHHHHHSSEEEECCSSHHHHHHHHT
T ss_pred cccCCCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCCCeecCCHHHHHhcCCEEEEEeCCHHHHHHHhc
Confidence 345678999999999999999999999999999998752 233445576554 899999999999999997766777775
Q ss_pred HHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhCCCeeEEEeeccCCCC
Q 006864 303 DETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEEP 350 (628)
Q Consensus 303 ~~~l~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~ga~lDV~~~EP 350 (628)
.+.+..+++|.++||++++...+.+.+.+.+++..+....--|+...|
T Consensus 85 ~~~l~~~~~g~ivid~st~~~~~~~~l~~~~~~~g~~~vdapv~g~~~ 132 (306)
T 3l6d_A 85 MPGVARALAHRTIVDYTTNAQDEGLALQGLVNQAGGHYVKGMIVAYPR 132 (306)
T ss_dssp STTHHHHTTTCEEEECCCCCTTHHHHHHHHHHHTTCEEEEEEEESCGG
T ss_pred ccchhhccCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEecccccCcc
Confidence 334666889999999999999999999999877555322223444433
|
| >4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.19 E-value=6.3e-10 Score=120.04 Aligned_cols=180 Identities=17% Similarity=0.200 Sum_probs=113.7
Q ss_pred CCCeEEEEcCCCCCCHHHHHhcCCcceeEEecccccCcccHhHHHhcCceEEcCCCCC------h----hhHHHHHHHHH
Q 006864 129 SQCDALIVRSGTKVTRSVFEAANGKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIAN------T----VAAAEHGIALL 198 (628)
Q Consensus 129 ~~~d~liv~~~~~v~~~~l~~~~~~Lk~I~~~g~G~D~iDl~aa~~~GI~V~n~p~~~------~----~avAE~~l~l~ 198 (628)
.++|+|+-- ...+.+-++...++-.+++..--.-|.--++++.++||...---... . .+++|.+=
T Consensus 89 ~~adiIlkV--k~p~~~e~~~l~~g~~l~~~lh~~~~~~l~~~l~~~~it~ia~E~i~r~~ra~~l~~ls~~s~iAG--- 163 (405)
T 4dio_A 89 KTADVILKV--RRPSAQEISGYRSGAVVIAIMDPYGNEEAISAMAGAGLTTFAMELMPRITRAQSMDVLSSQANLAG--- 163 (405)
T ss_dssp GGCSEEEEE--ECCCTTTGGGSCTTCEEEEECCCTTCHHHHHHHHHTTCEEEEGGGSCCSGGGGGGCHHHHHHHHHH---
T ss_pred ccCCEEEEe--CCCChhHHhhcCCCcEEEEEeccccCHHHHHHHHHCCCeEEEeeccccccccCccceecchhHHHH---
Confidence 457877631 12333444555556666665444334444688889999885332221 1 12222221
Q ss_pred HHHHHchhHHHHHHHcCcccccccce-eeecCCeEEEEecChhHHHHHHHHHcCCCEEEEECCCCCh-hHHHHcCCcc--
Q 006864 199 ASMARNVSQADASIKAGKWLRSKYVG-VSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPA-DKARAVGVEL-- 274 (628)
Q Consensus 199 L~~~R~i~~~~~~~~~g~W~~~~~~g-~~l~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~~g~~~-- 274 (628)
.+-+..+.+.+ ++.......+ ..+.+.+++|+|+|.||..+|+.++++|++|++||++... +.+.++|..+
T Consensus 164 ---y~Av~~aa~~l--~~~~~~l~t~~g~v~~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~~~~G~~~~~ 238 (405)
T 4dio_A 164 ---YQAVIDAAYEY--DRALPMMMTAAGTVPAAKIFVMGAGVAGLQAIATARRLGAVVSATDVRPAAKEQVASLGAKFIA 238 (405)
T ss_dssp ---HHHHHHHHHHC--SSCSSCEEETTEEECCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSTTHHHHHHHTTCEECC
T ss_pred ---HHHHHHHHHHh--HhhhchhhccCCCcCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHcCCceee
Confidence 11111111111 1111100111 2578999999999999999999999999999999998743 4455566532
Q ss_pred ----------------------------cCHHHHhccCCEEEEcC--CCCccccccccHHHHhcCCCCcEEEEcC
Q 006864 275 ----------------------------VSFDQALATADFISLHM--PLNPTTSKIFNDETFAKMKKGVRIVNVA 319 (628)
Q Consensus 275 ----------------------------~sl~ell~~aDvV~l~~--Plt~~t~~li~~~~l~~mk~gailIN~a 319 (628)
.++.+++++||+|+.++ |.. ....+++++.++.||+|++|||++
T Consensus 239 ~~~~~~~d~~~~~~ya~e~s~~~~~~~~~~l~e~l~~aDVVI~tvlipg~-~ap~Lvt~emv~~Mk~GsVIVDvA 312 (405)
T 4dio_A 239 VEDEEFKAAETAGGYAKEMSGEYQVKQAALVAEHIAKQDIVITTALIPGR-PAPRLVTREMLDSMKPGSVVVDLA 312 (405)
T ss_dssp CCC-----------------CHHHHHHHHHHHHHHHTCSEEEECCCCSSS-CCCCCBCHHHHTTSCTTCEEEETT
T ss_pred cccccccccccccchhhhcchhhhhhhHhHHHHHhcCCCEEEECCcCCCC-CCCEEecHHHHhcCCCCCEEEEEe
Confidence 14788899999998875 533 357889999999999999999997
|
| >3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=3.1e-11 Score=125.79 Aligned_cols=113 Identities=20% Similarity=0.274 Sum_probs=96.1
Q ss_pred CeEEEEecChhHHHHHHHHHcCCCEEEEECCCCC-hhHHHHcCCccc-CHHHHhccCCEEEEcCCCCcccccccc--HHH
Q 006864 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAP-ADKARAVGVELV-SFDQALATADFISLHMPLNPTTSKIFN--DET 305 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~g~~~~-sl~ell~~aDvV~l~~Plt~~t~~li~--~~~ 305 (628)
|+|||||+|.||..+|++|...|++|.+||+... .+...+.|.... ++.|+++.||+|++|+|..+..+.++. ...
T Consensus 4 ~kIgfIGlG~MG~~mA~~L~~~G~~v~v~dr~~~~~~~l~~~Ga~~a~s~~e~~~~~dvv~~~l~~~~~v~~V~~~~~g~ 83 (300)
T 3obb_A 4 KQIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQSAVDGLVAAGASAARSARDAVQGADVVISMLPASQHVEGLYLDDDGL 83 (300)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTCEEEEECSSHHHHHHHHHTTCEECSSHHHHHTTCSEEEECCSCHHHHHHHHHSSSSS
T ss_pred CEEEEeeehHHHHHHHHHHHhCCCeEEEEcCCHHHHHHHHHcCCEEcCCHHHHHhcCCceeecCCchHHHHHHHhchhhh
Confidence 6899999999999999999999999999999852 344556677655 899999999999999998887777663 346
Q ss_pred HhcCCCCcEEEEcCCCchhcHHHHHHHHhCCCeeEEEee
Q 006864 306 FAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALD 344 (628)
Q Consensus 306 l~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~ga~lD 344 (628)
++.+++|.++||++....-+...+.+.+++..+ ..+|
T Consensus 84 ~~~~~~g~iiId~sT~~p~~~~~~a~~~~~~G~--~~lD 120 (300)
T 3obb_A 84 LAHIAPGTLVLECSTIAPTSARKIHAAARERGL--AMLD 120 (300)
T ss_dssp TTSCCC-CEEEECSCCCHHHHHHHHHHHHTTTC--EEEE
T ss_pred hhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCC--EEEe
Confidence 788999999999999999999999999998877 4456
|
| >3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.17 E-value=4.4e-11 Score=124.77 Aligned_cols=115 Identities=9% Similarity=0.103 Sum_probs=93.9
Q ss_pred eeeecCCeEEEEecChhHHHHHHHHHcCCCEEEEECCCCC-hhHHHHcCCccc-CHHHHhccCCEEEEcCCCCccccccc
Q 006864 224 GVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAP-ADKARAVGVELV-SFDQALATADFISLHMPLNPTTSKIF 301 (628)
Q Consensus 224 g~~l~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~g~~~~-sl~ell~~aDvV~l~~Plt~~t~~li 301 (628)
.....-++|||||+|.||..+|++|...|++|.+||+... .+...+.|+... ++++++++||+|++|+|....++.++
T Consensus 16 ~~~~~m~~I~iIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~~~~~~~~~aDvvi~~vp~~~~~~~v~ 95 (310)
T 3doj_A 16 PRGSHMMEVGFLGLGIMGKAMSMNLLKNGFKVTVWNRTLSKCDELVEHGASVCESPAEVIKKCKYTIAMLSDPCAALSVV 95 (310)
T ss_dssp --CCCSCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSGGGGHHHHHTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHH
T ss_pred cccccCCEEEEECccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHCCCeEcCCHHHHHHhCCEEEEEcCCHHHHHHHH
Confidence 3455568999999999999999999999999999999863 344556677654 89999999999999999766666655
Q ss_pred --cHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhCCCe
Q 006864 302 --NDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVV 338 (628)
Q Consensus 302 --~~~~l~~mk~gailIN~aRg~~vde~aL~~aL~~g~i 338 (628)
.++.+..+++|.+|||+++......+.+.+.+.+..+
T Consensus 96 ~~~~~l~~~l~~g~~vv~~st~~~~~~~~~~~~~~~~g~ 134 (310)
T 3doj_A 96 FDKGGVLEQICEGKGYIDMSTVDAETSLKINEAITGKGG 134 (310)
T ss_dssp HSTTCGGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTC
T ss_pred hCchhhhhccCCCCEEEECCCCCHHHHHHHHHHHHHcCC
Confidence 2455677999999999999999999999988877544
|
| >2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=8.8e-12 Score=126.98 Aligned_cols=176 Identities=16% Similarity=0.154 Sum_probs=124.0
Q ss_pred CCCHhHHHhhcCC----CeEEEEcCCCCCCHHHHHhcCCcceeEEecccccCcccHhHHHhcCceEEcCCCCChhhHHHH
Q 006864 118 DLSPEALCEKISQ----CDALIVRSGTKVTRSVFEAANGKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEH 193 (628)
Q Consensus 118 ~~~~~el~~~~~~----~d~liv~~~~~v~~~~l~~~~~~Lk~I~~~g~G~D~iDl~aa~~~GI~V~n~p~~~~~avAE~ 193 (628)
+.+++++.+.+.+ ++++.+. .++.+++++.+ ++|.-+++...|+|.++. +.| +..|+|++.
T Consensus 37 ~~~~~~l~~~i~~l~~~~~G~~vt--~P~k~~i~~~~-~~l~~~a~~~gavn~i~~----~~g----~~~g~ntd~---- 101 (263)
T 2d5c_A 37 DTPLEALPGRLKEVRRAFRGVNLT--LPLKEAALAHL-DWVSPEAQRIGAVNTVLQ----VEG----RLFGFNTDA---- 101 (263)
T ss_dssp ECCGGGHHHHHHHHHHHCSEEEEC--TTCTTGGGGGC-SEECHHHHHHTCCCEEEE----ETT----EEEEECCHH----
T ss_pred eCCHHHHHHHHHhccccCceEEEc--ccCHHHHHHHH-HHHhHHHHHhCCCCcEEc----cCC----eEEEeCCCH----
Confidence 4566677665544 4455543 46778888887 489999999999999976 344 234566654
Q ss_pred HHHHHHHHHHchhHHHHHHHcCcccccccceeeecCCeEEEEecChhHHHHHHHHHcCCCEEEEECCCCCh--hHHHHcC
Q 006864 194 GIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPA--DKARAVG 271 (628)
Q Consensus 194 ~l~l~L~~~R~i~~~~~~~~~g~W~~~~~~g~~l~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~--~~a~~~g 271 (628)
.+++.++.| .+.++.| +++|||+|.+|+.+|+.|..+|++|.++|+.... ..+...+
T Consensus 102 -~g~~~~l~~-------------------~~~~l~~-~v~iiG~G~~g~~~a~~l~~~g~~v~v~~r~~~~~~~l~~~~~ 160 (263)
T 2d5c_A 102 -PGFLEALKA-------------------GGIPLKG-PALVLGAGGAGRAVAFALREAGLEVWVWNRTPQRALALAEEFG 160 (263)
T ss_dssp -HHHHHHHHH-------------------TTCCCCS-CEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHT
T ss_pred -HHHHHHHHH-------------------hCCCCCC-eEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhc
Confidence 244444433 1346889 9999999999999999999999999999987522 2233445
Q ss_pred CcccCHHHHhccCCEEEEcCCCCc--cccccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhC
Q 006864 272 VELVSFDQALATADFISLHMPLNP--TTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDS 335 (628)
Q Consensus 272 ~~~~sl~ell~~aDvV~l~~Plt~--~t~~li~~~~l~~mk~gailIN~aRg~~vde~aL~~aL~~ 335 (628)
....+++++ +++|+|++|+|... ++...+. .+.+++|.+++|++.+.. +. .|.+++++
T Consensus 161 ~~~~~~~~~-~~~Divi~~tp~~~~~~~~~~l~---~~~l~~g~~viD~~~~p~-~t-~l~~~a~~ 220 (263)
T 2d5c_A 161 LRAVPLEKA-REARLLVNATRVGLEDPSASPLP---AELFPEEGAAVDLVYRPL-WT-RFLREAKA 220 (263)
T ss_dssp CEECCGGGG-GGCSEEEECSSTTTTCTTCCSSC---GGGSCSSSEEEESCCSSS-SC-HHHHHHHH
T ss_pred cchhhHhhc-cCCCEEEEccCCCCCCCCCCCCC---HHHcCCCCEEEEeecCCc-cc-HHHHHHHH
Confidence 544578888 99999999999762 3334443 466899999999998743 33 36666554
|
| >4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.16 E-value=7e-11 Score=123.87 Aligned_cols=138 Identities=17% Similarity=0.141 Sum_probs=97.3
Q ss_pred HHHHHHcCcccccccceeeecCCeEEEEecChhHHHHHHHHHcCC-CEEEEECCCCC--------hhHHHHcCCccc-CH
Q 006864 208 ADASIKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLG-MNVIAHDPYAP--------ADKARAVGVELV-SF 277 (628)
Q Consensus 208 ~~~~~~~g~W~~~~~~g~~l~GktiGIIGlG~IG~~vA~~l~~~G-~~V~~~d~~~~--------~~~a~~~g~~~~-sl 277 (628)
++.+.+-+.|.+..++.. --++|||||+|.||..+|+.|...| ++|++||+... .+...+.|+ .. ++
T Consensus 5 ~~~~~~~~~~~~~~~~~~--M~m~IgvIG~G~mG~~lA~~L~~~G~~~V~~~dr~~~~~~~~~~~~~~~~~~g~-~~~s~ 81 (317)
T 4ezb_A 5 HHHSSGVDLGTENLYFQS--MMTTIAFIGFGEAAQSIAGGLGGRNAARLAAYDLRFNDPAASGALRARAAELGV-EPLDD 81 (317)
T ss_dssp ----------CCCHHHHT--SCCEEEEECCSHHHHHHHHHHHTTTCSEEEEECGGGGCTTTHHHHHHHHHHTTC-EEESS
T ss_pred cccccccccCcccCcccc--cCCeEEEECccHHHHHHHHHHHHcCCCeEEEEeCCCccccchHHHHHHHHHCCC-CCCCH
Confidence 344555566776543221 1368999999999999999999999 99999998741 122334566 56 88
Q ss_pred HHHhccCCEEEEcCCCCccccccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhCCCeeEEEeeccCCCC
Q 006864 278 DQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEEP 350 (628)
Q Consensus 278 ~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~ga~lDV~~~EP 350 (628)
++++++||+|++|+|.......+ ++.+..++++.+|||+++......+.+.+.+++..+....--|+..+|
T Consensus 82 ~e~~~~aDvVi~avp~~~~~~~~--~~i~~~l~~~~ivv~~st~~p~~~~~~~~~l~~~g~~~~d~pv~g~~~ 152 (317)
T 4ezb_A 82 VAGIACADVVLSLVVGAATKAVA--ASAAPHLSDEAVFIDLNSVGPDTKALAAGAIATGKGSFVEGAVMARVP 152 (317)
T ss_dssp GGGGGGCSEEEECCCGGGHHHHH--HHHGGGCCTTCEEEECCSCCHHHHHHHHHHHHTSSCEEEEEEECSCST
T ss_pred HHHHhcCCEEEEecCCHHHHHHH--HHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEeccCCCCch
Confidence 99999999999999966554433 566778999999999999999999999999987654333223666443
|
| >3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=99.15 E-value=9.4e-11 Score=122.49 Aligned_cols=140 Identities=14% Similarity=0.141 Sum_probs=93.7
Q ss_pred HHHHHcCccccccc--ceeeecCCeEEEEecChhHHHHHHHHHcCCC-EEEEECCCC---ChhHHHHcCCccc-CHHHHh
Q 006864 209 DASIKAGKWLRSKY--VGVSLVGKTLAVMGFGKVGSEVARRAKGLGM-NVIAHDPYA---PADKARAVGVELV-SFDQAL 281 (628)
Q Consensus 209 ~~~~~~g~W~~~~~--~g~~l~GktiGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~---~~~~a~~~g~~~~-sl~ell 281 (628)
++.++.+.|.+... .......++|||||+|.||+.+|+.|...|+ +|.+||+.. ..+...+.|+... ++.+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~I~iIG~G~mG~~~A~~L~~~G~~~V~~~dr~~~~~~~~~~~~~g~~~~~~~~e~~ 81 (312)
T 3qsg_A 2 HHHHHHSSGVDLGTENLYFQSNAMKLGFIGFGEAASAIASGLRQAGAIDMAAYDAASAESWRPRAEELGVSCKASVAEVA 81 (312)
T ss_dssp -----------------------CEEEEECCSHHHHHHHHHHHHHSCCEEEEECSSCHHHHHHHHHHTTCEECSCHHHHH
T ss_pred CcccccccccccCcccccccCCCCEEEEECccHHHHHHHHHHHHCCCCeEEEEcCCCCHHHHHHHHHCCCEEeCCHHHHH
Confidence 35567777875421 1223445799999999999999999999999 999999962 2334456677654 899999
Q ss_pred ccCCEEEEcCCCCccccccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhCC--CeeEEEeeccCCCC
Q 006864 282 ATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSG--VVAQAALDVFTEEP 350 (628)
Q Consensus 282 ~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~~vde~aL~~aL~~g--~i~ga~lDV~~~EP 350 (628)
++||+|++|+|...... .+ .+....++++.+|||+++.......++.+.+.+. .+....--|+..+|
T Consensus 82 ~~aDvVi~~vp~~~~~~-~~-~~l~~~l~~~~ivvd~st~~~~~~~~~~~~~~~~~~g~~~vd~pv~g~~~ 150 (312)
T 3qsg_A 82 GECDVIFSLVTAQAALE-VA-QQAGPHLCEGALYADFTSCSPAVKRAIGDVISRHRPSAQYAAVAVMSAVK 150 (312)
T ss_dssp HHCSEEEECSCTTTHHH-HH-HHHGGGCCTTCEEEECCCCCHHHHHHHHHHHHHHCTTCEEEEEEECSCST
T ss_pred hcCCEEEEecCchhHHH-HH-HhhHhhcCCCCEEEEcCCCCHHHHHHHHHHHHhhcCCCeEEeccccCCch
Confidence 99999999999665443 32 5667789999999999999999999999888764 33222223666544
|
| >4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans} | Back alignment and structure |
|---|
Probab=99.15 E-value=4.6e-11 Score=124.24 Aligned_cols=120 Identities=15% Similarity=0.219 Sum_probs=95.9
Q ss_pred CeEEEEecChhHHHHHHHHHcCCCEEEEECCCCC-hhHHHHcCCccc-CHHHHhccCCEEEEcCCCCccccccccHHHHh
Q 006864 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAP-ADKARAVGVELV-SFDQALATADFISLHMPLNPTTSKIFNDETFA 307 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~g~~~~-sl~ell~~aDvV~l~~Plt~~t~~li~~~~l~ 307 (628)
++|||||+|.||..+|++|...|++|++||+... .+...+.|+..+ ++.|++++||+|++++|-.+..+..+....+.
T Consensus 6 ~kIgfIGLG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~~dvvi~~l~~~~~~~~v~~~~~~~ 85 (297)
T 4gbj_A 6 EKIAFLGLGNLGTPIAEILLEAGYELVVWNRTASKAEPLTKLGATVVENAIDAITPGGIVFSVLADDAAVEELFSMELVE 85 (297)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTCEEEEC-------CTTTTTTCEECSSGGGGCCTTCEEEECCSSHHHHHHHSCHHHHH
T ss_pred CcEEEEecHHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCCeEeCCHHHHHhcCCceeeeccchhhHHHHHHHHHHh
Confidence 5799999999999999999999999999998763 233455676655 89999999999999999777777778888899
Q ss_pred cCCCCcEEEEcCCCchhcHHHHHHHHhCCCeeEEEeeccCCC
Q 006864 308 KMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEE 349 (628)
Q Consensus 308 ~mk~gailIN~aRg~~vde~aL~~aL~~g~i~ga~lDV~~~E 349 (628)
.++++.++||++....-..+.+.+.+++..+...---|+..+
T Consensus 86 ~~~~~~iiid~sT~~p~~~~~~~~~~~~~g~~~ldapVsGg~ 127 (297)
T 4gbj_A 86 KLGKDGVHVSMSTISPETSRQLAQVHEWYGAHYVGAPIFARP 127 (297)
T ss_dssp HHCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEECCEECCH
T ss_pred hcCCCeEEEECCCCChHHHHHHHHHHHhcCCceecCCcCCCc
Confidence 999999999999999999999999998877743322244433
|
| >3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=99.14 E-value=8.5e-11 Score=121.82 Aligned_cols=117 Identities=20% Similarity=0.187 Sum_probs=95.8
Q ss_pred CCeEEEEecChhHHHHHHHHHcCCCEEEEECCCCC-hhHHHHcCCccc-CHHHHhccCCEEEEcCCCCccccccccHHHH
Q 006864 229 GKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAP-ADKARAVGVELV-SFDQALATADFISLHMPLNPTTSKIFNDETF 306 (628)
Q Consensus 229 GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~g~~~~-sl~ell~~aDvV~l~~Plt~~t~~li~~~~l 306 (628)
.++|||||+|.||+.+|++|...|++|.+||+... .+...+.|+... +++++++ ||+|++|+|....++..+ ++.+
T Consensus 15 ~~~I~vIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~-aDvvi~~vp~~~~~~~v~-~~l~ 92 (296)
T 3qha_A 15 QLKLGYIGLGNMGAPMATRMTEWPGGVTVYDIRIEAMTPLAEAGATLADSVADVAA-ADLIHITVLDDAQVREVV-GELA 92 (296)
T ss_dssp CCCEEEECCSTTHHHHHHHHTTSTTCEEEECSSTTTSHHHHHTTCEECSSHHHHTT-SSEEEECCSSHHHHHHHH-HHHH
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHCCCEEcCCHHHHHh-CCEEEEECCChHHHHHHH-HHHH
Confidence 36899999999999999999999999999998863 345566677654 8999999 999999999766667666 6777
Q ss_pred hcCCCCcEEEEcCCCchhcHHHHHHHHhCCCeeEEEeeccC
Q 006864 307 AKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFT 347 (628)
Q Consensus 307 ~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~ga~lDV~~ 347 (628)
..++++.++||+++......+.+.+.+.+..+......|+.
T Consensus 93 ~~l~~g~ivv~~st~~~~~~~~~~~~~~~~g~~~~~~pv~g 133 (296)
T 3qha_A 93 GHAKPGTVIAIHSTISDTTAVELARDLKARDIHIVDAPVSG 133 (296)
T ss_dssp TTCCTTCEEEECSCCCHHHHHHHHHHHGGGTCEEEECCEES
T ss_pred HhcCCCCEEEEeCCCCHHHHHHHHHHHHHcCCEEEeCCCcC
Confidence 78999999999999999999999999987655333223443
|
| >4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=99.12 E-value=1.5e-10 Score=123.49 Aligned_cols=121 Identities=11% Similarity=0.186 Sum_probs=99.0
Q ss_pred ecCCeEEEEecChhHHHHHHHHHcCCCEEEEECCCCC-hhHHHHcCCccc-CHHHHhccC---CEEEEcCCCCccccccc
Q 006864 227 LVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAP-ADKARAVGVELV-SFDQALATA---DFISLHMPLNPTTSKIF 301 (628)
Q Consensus 227 l~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~g~~~~-sl~ell~~a---DvV~l~~Plt~~t~~li 301 (628)
+.+++|||||+|.||+.+|++|...|++|.+||+... .+...+.|+... +++++++.+ |+|++++|.. .++.++
T Consensus 20 m~~mkIgiIGlG~mG~~~A~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~a~~~DvVi~~vp~~-~v~~vl 98 (358)
T 4e21_A 20 FQSMQIGMIGLGRMGADMVRRLRKGGHECVVYDLNVNAVQALEREGIAGARSIEEFCAKLVKPRVVWLMVPAA-VVDSML 98 (358)
T ss_dssp --CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTTCBCCSSHHHHHHHSCSSCEEEECSCGG-GHHHHH
T ss_pred hcCCEEEEECchHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHCCCEEeCCHHHHHhcCCCCCEEEEeCCHH-HHHHHH
Confidence 5678999999999999999999999999999998752 233444566554 899999999 9999999966 666666
Q ss_pred cHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhCCCeeEEEeeccCCC
Q 006864 302 NDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEE 349 (628)
Q Consensus 302 ~~~~l~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~ga~lDV~~~E 349 (628)
.+.+..+++|.+|||++++...+...+.+.+++..+......|+..+
T Consensus 99 -~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~vdapVsGg~ 145 (358)
T 4e21_A 99 -QRMTPLLAANDIVIDGGNSHYQDDIRRADQMRAQGITYVDVGTSGGI 145 (358)
T ss_dssp -HHHGGGCCTTCEEEECSSCCHHHHHHHHHHHHTTTCEEEEEEEECGG
T ss_pred -HHHHhhCCCCCEEEeCCCCChHHHHHHHHHHHHCCCEEEeCCCCCCH
Confidence 56777899999999999999999999999998877755555566654
|
| >3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A | Back alignment and structure |
|---|
Probab=99.12 E-value=2.4e-10 Score=117.40 Aligned_cols=139 Identities=19% Similarity=0.170 Sum_probs=100.0
Q ss_pred CeEEEEecChhHHHHHHHHHcC--CCEEEEECCCCC-hhHHHHcCCc---ccCHHHHhccCCEEEEcCCCCccccccccH
Q 006864 230 KTLAVMGFGKVGSEVARRAKGL--GMNVIAHDPYAP-ADKARAVGVE---LVSFDQALATADFISLHMPLNPTTSKIFND 303 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~--G~~V~~~d~~~~-~~~a~~~g~~---~~sl~ell~~aDvV~l~~Plt~~t~~li~~ 303 (628)
++|||||+|.||+.+|+.|... |++|++||+... .+...+.|.. ..++++++++||+|++++|... ...++ +
T Consensus 7 ~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~aDvVilavp~~~-~~~v~-~ 84 (290)
T 3b1f_A 7 KTIYIAGLGLIGASLALGIKRDHPHYKIVGYNRSDRSRDIALERGIVDEATADFKVFAALADVIILAVPIKK-TIDFI-K 84 (290)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSHHHHHHHHHTTSCSEEESCTTTTGGGCSEEEECSCHHH-HHHHH-H
T ss_pred ceEEEEeeCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHHcCCcccccCCHHHhhcCCCEEEEcCCHHH-HHHHH-H
Confidence 6899999999999999999865 789999998752 2334455652 2478888999999999999443 34444 3
Q ss_pred HHHhc-CCCCcEEEEcCCCchhcHHHHHHHHhC-C-CeeE----EEeeccCCCCCCCCCccccCCcEEEcCCCCCC
Q 006864 304 ETFAK-MKKGVRIVNVARGGVIDEEALVRALDS-G-VVAQ----AALDVFTEEPPAKDSKLVQHENVTVTPHLGAS 372 (628)
Q Consensus 304 ~~l~~-mk~gailIN~aRg~~vde~aL~~aL~~-g-~i~g----a~lDV~~~EP~~~~~~L~~~~nvilTPHig~~ 372 (628)
+.... ++++++|++++++.....+.+.+.+.. + ++.+ ++.+.. .|......++...+++++||.++.
T Consensus 85 ~l~~~~l~~~~ivi~~~~~~~~~~~~l~~~l~~~~~~~v~~~P~~g~~~~--g~~~a~~~l~~g~~~~~~~~~~~~ 158 (290)
T 3b1f_A 85 ILADLDLKEDVIITDAGSTKYEIVRAAEYYLKDKPVQFVGSHPMAGSHKS--GAVAANVNLFENAYYIFSPSCLTK 158 (290)
T ss_dssp HHHTSCCCTTCEEECCCSCHHHHHHHHHHHHTTSSCEEEEEEEC-----C--CTTSCCTTTTTTSEEEEEECTTCC
T ss_pred HHHhcCCCCCCEEEECCCCchHHHHHHHHhccccCCEEEEeCCcCCCCcc--hHHHhhHHHhCCCeEEEecCCCCC
Confidence 34556 899999999999887777888888875 2 2222 111221 233345578888899999998776
|
| >3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=99.11 E-value=1.1e-10 Score=119.97 Aligned_cols=109 Identities=13% Similarity=0.160 Sum_probs=91.6
Q ss_pred CeEEEEecChhHHHHHHHHHcCCCEEEEECCCCC-hhHHHHcCCccc-CHHHHhccCCEEEEcCCCCcccccccc--HHH
Q 006864 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAP-ADKARAVGVELV-SFDQALATADFISLHMPLNPTTSKIFN--DET 305 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~g~~~~-sl~ell~~aDvV~l~~Plt~~t~~li~--~~~ 305 (628)
++|||||+|.||+.+|+.|...|++|.+||+... .+...+.|+... ++++++++||+|++|+|....++..+. ++.
T Consensus 2 ~~i~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~aDvvi~~vp~~~~~~~v~~~~~~l 81 (287)
T 3pef_A 2 QKFGFIGLGIMGSAMAKNLVKAGCSVTIWNRSPEKAEELAALGAERAATPCEVVESCPVTFAMLADPAAAEEVCFGKHGV 81 (287)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSGGGGHHHHHTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTCH
T ss_pred CEEEEEeecHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCeecCCHHHHHhcCCEEEEEcCCHHHHHHHHcCcchH
Confidence 6899999999999999999999999999999863 344555677654 899999999999999996666666652 456
Q ss_pred HhcCCCCcEEEEcCCCchhcHHHHHHHHhCCCe
Q 006864 306 FAKMKKGVRIVNVARGGVIDEEALVRALDSGVV 338 (628)
Q Consensus 306 l~~mk~gailIN~aRg~~vde~aL~~aL~~g~i 338 (628)
+..+++|.++||+++....+.+.+.+.+++..+
T Consensus 82 ~~~l~~~~~vi~~st~~~~~~~~~~~~~~~~g~ 114 (287)
T 3pef_A 82 LEGIGEGRGYVDMSTVDPATSQRIGVAVVAKGG 114 (287)
T ss_dssp HHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTC
T ss_pred hhcCCCCCEEEeCCCCCHHHHHHHHHHHHHhCC
Confidence 677999999999999999999999998877654
|
| >1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.10 E-value=3.8e-11 Score=127.05 Aligned_cols=138 Identities=24% Similarity=0.306 Sum_probs=100.6
Q ss_pred eeecCCeEEEEecChhHHHHHHHHHcCCCEEEEECCCCCh--hHHHHcCCcccCHHHHhccCCEEEEcCCCCcccccccc
Q 006864 225 VSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPA--DKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFN 302 (628)
Q Consensus 225 ~~l~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~--~~a~~~g~~~~sl~ell~~aDvV~l~~Plt~~t~~li~ 302 (628)
..+.+++|||||+|.||+++|+.|+..|++|++||+.... +.+.+.|+...++++++++||+|++|+|... ...++.
T Consensus 12 ~~l~~~~I~IIG~G~mG~alA~~L~~~G~~V~~~~~~~~~~~~~a~~~G~~~~~~~e~~~~aDvVilavp~~~-~~~v~~ 90 (338)
T 1np3_A 12 SIIQGKKVAIIGYGSQGHAHACNLKDSGVDVTVGLRSGSATVAKAEAHGLKVADVKTAVAAADVVMILTPDEF-QGRLYK 90 (338)
T ss_dssp HHHHTSCEEEECCSHHHHHHHHHHHHTTCCEEEECCTTCHHHHHHHHTTCEEECHHHHHHTCSEEEECSCHHH-HHHHHH
T ss_pred chhcCCEEEEECchHHHHHHHHHHHHCcCEEEEEECChHHHHHHHHHCCCEEccHHHHHhcCCEEEEeCCcHH-HHHHHH
Confidence 4588999999999999999999999999999999987643 4556678766689999999999999999554 355554
Q ss_pred HHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhCCCeeEEEeeccCCCCCCCCC---cccc---CCcEEEcCCCCCC
Q 006864 303 DETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEEPPAKDS---KLVQ---HENVTVTPHLGAS 372 (628)
Q Consensus 303 ~~~l~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~ga~lDV~~~EP~~~~~---~L~~---~~nvilTPHig~~ 372 (628)
++....|++|++|++++ + +.. ..+.+. .+.++||+..+|..+.+ .|++ ..++++|||....
T Consensus 91 ~~i~~~l~~~~ivi~~~--g-v~~--~~~~~~----~~~~~~vv~~~P~gp~~a~~~l~~~G~g~~~ii~~~~~~~ 157 (338)
T 1np3_A 91 EEIEPNLKKGATLAFAH--G-FSI--HYNQVV----PRADLDVIMIAPKAPGHTVRSEFVKGGGIPDLIAIYQDAS 157 (338)
T ss_dssp HHTGGGCCTTCEEEESC--C-HHH--HTTSSC----CCTTCEEEEEEESSCSHHHHHHHHTTCCCCEEEEEEECSS
T ss_pred HHHHhhCCCCCEEEEcC--C-chh--HHHhhc----CCCCcEEEeccCCCCchhHHHHHhccCCCeEEEEecCCCC
Confidence 35556799999999884 3 332 222222 12345666666643333 3555 7789999996543
|
| >3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=3.5e-10 Score=124.43 Aligned_cols=152 Identities=20% Similarity=0.255 Sum_probs=109.3
Q ss_pred cceeEE-ecccccCccc-HhHHHhcCceEEcCCCCChhhHHHHHHHHHHHHHHchhHHHHHHHcCcccccccceeeecCC
Q 006864 153 KLKVVG-RAGVGIDNVD-LQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGK 230 (628)
Q Consensus 153 ~Lk~I~-~~g~G~D~iD-l~aa~~~GI~V~n~p~~~~~avAE~~l~l~L~~~R~i~~~~~~~~~g~W~~~~~~g~~l~Gk 230 (628)
+++-+. -..+|+..+. +.+..+..|+|+|+.+..+...-+...+ . .+.+..+-|. ..+..+.||
T Consensus 201 ~i~G~~EeTttGv~rL~~~~~~g~L~iPvinvnDs~tK~~fDn~yG----t-------~~sl~dgi~r---~tg~~L~GK 266 (488)
T 3ond_A 201 RVVGVSEETTTGVKRLYQMQANGTLLFPAINVNDSVTKSKFDNLYG----C-------RHSLPDGLMR---ATDVMIAGK 266 (488)
T ss_dssp HCCEEEECSHHHHHHHHHHHHTTCCCSCEEECTTSHHHHTTHHHHH----H-------HHHHHHHHHH---HHCCCCTTC
T ss_pred hcceeEecccccHHHHHHHHHcCCCCCceecccchhhhhHhhhhcc----c-------cHHHHHHHHH---HcCCcccCC
Confidence 344443 3578887752 2333457799999977554432222111 1 1112222221 235679999
Q ss_pred eEEEEecChhHHHHHHHHHcCCCEEEEECCCCC-hhHHHHcCCcccCHHHHhccCCEEEEcCCCCccccccccHHHHhcC
Q 006864 231 TLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAP-ADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKM 309 (628)
Q Consensus 231 tiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~g~~~~sl~ell~~aDvV~l~~Plt~~t~~li~~~~l~~m 309 (628)
+++|+|+|.||+.+|++|+++|++|+++|+... ...+...++...++++++..+|+|+.+. .+.++++.+.|+.|
T Consensus 267 tVvVtGaGgIG~aiA~~Laa~GA~Viv~D~~~~~a~~Aa~~g~dv~~lee~~~~aDvVi~at----G~~~vl~~e~l~~m 342 (488)
T 3ond_A 267 VAVVAGYGDVGKGCAAALKQAGARVIVTEIDPICALQATMEGLQVLTLEDVVSEADIFVTTT----GNKDIIMLDHMKKM 342 (488)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECCGGGTTTTCSEEEECS----SCSCSBCHHHHTTS
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHhCCccCCHHHHHHhcCEEEeCC----CChhhhhHHHHHhc
Confidence 999999999999999999999999999998752 2345566777778999999999999754 46788999999999
Q ss_pred CCCcEEEEcCCCc
Q 006864 310 KKGVRIVNVARGG 322 (628)
Q Consensus 310 k~gailIN~aRg~ 322 (628)
|++++|+|++++.
T Consensus 343 k~gaiVvNaG~~~ 355 (488)
T 3ond_A 343 KNNAIVCNIGHFD 355 (488)
T ss_dssp CTTEEEEESSSTT
T ss_pred CCCeEEEEcCCCC
Confidence 9999999999983
|
| >3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens} | Back alignment and structure |
|---|
Probab=99.08 E-value=1.1e-10 Score=119.94 Aligned_cols=109 Identities=14% Similarity=0.159 Sum_probs=90.7
Q ss_pred CeEEEEecChhHHHHHHHHHcCCCEEEEECCCCC-hhHHHHcCCccc-CHHHHhccCCEEEEcCCCCcccccccc--HHH
Q 006864 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAP-ADKARAVGVELV-SFDQALATADFISLHMPLNPTTSKIFN--DET 305 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~g~~~~-sl~ell~~aDvV~l~~Plt~~t~~li~--~~~ 305 (628)
++|||||+|.||+.+|++|...|++|.+||+... .+...+.|+... ++++++++||+|++|+|..+.++..+. ++.
T Consensus 2 ~~I~iiG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~advvi~~v~~~~~~~~v~~~~~~l 81 (287)
T 3pdu_A 2 TTYGFLGLGIMGGPMAANLVRAGFDVTVWNRNPAKCAPLVALGARQASSPAEVCAACDITIAMLADPAAAREVCFGANGV 81 (287)
T ss_dssp CCEEEECCSTTHHHHHHHHHHHTCCEEEECSSGGGGHHHHHHTCEECSCHHHHHHHCSEEEECCSSHHHHHHHHHSTTCG
T ss_pred CeEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCeecCCHHHHHHcCCEEEEEcCCHHHHHHHHcCchhh
Confidence 5899999999999999999999999999999863 344455677654 899999999999999997656666552 455
Q ss_pred HhcCCCCcEEEEcCCCchhcHHHHHHHHhCCCe
Q 006864 306 FAKMKKGVRIVNVARGGVIDEEALVRALDSGVV 338 (628)
Q Consensus 306 l~~mk~gailIN~aRg~~vde~aL~~aL~~g~i 338 (628)
+..+++|.++||++++.....+.+.+.+.+..+
T Consensus 82 ~~~l~~g~~vv~~st~~~~~~~~~~~~~~~~g~ 114 (287)
T 3pdu_A 82 LEGIGGGRGYIDMSTVDDETSTAIGAAVTARGG 114 (287)
T ss_dssp GGTCCTTCEEEECSCCCHHHHHHHHHHHHHTTC
T ss_pred hhcccCCCEEEECCCCCHHHHHHHHHHHHHcCC
Confidence 677999999999999999999999988877544
|
| >2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.07 E-value=3.9e-10 Score=117.01 Aligned_cols=137 Identities=15% Similarity=0.162 Sum_probs=93.6
Q ss_pred HHHHHHHcCcccccccceeeecCCeEEEEe-cChhHHHHHHHHHcCCCEEEEECCCCChhHHHHcCCcccCHHHHhccCC
Q 006864 207 QADASIKAGKWLRSKYVGVSLVGKTLAVMG-FGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATAD 285 (628)
Q Consensus 207 ~~~~~~~~g~W~~~~~~g~~l~GktiGIIG-lG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~sl~ell~~aD 285 (628)
+.+.+++...|..... ..++||||| +|.||+.+|+.|+..|++|.+||+... .++++++++||
T Consensus 4 ~~~~~~~~~~~~~~~~-----~~~~I~iIGg~G~mG~~la~~l~~~G~~V~~~~~~~~-----------~~~~~~~~~aD 67 (298)
T 2pv7_A 4 ESYANENQFGFKTINS-----DIHKIVIVGGYGKLGGLFARYLRASGYPISILDREDW-----------AVAESILANAD 67 (298)
T ss_dssp ---------CCCCSCT-----TCCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCG-----------GGHHHHHTTCS
T ss_pred hHHhhhhccCccccCC-----CCCEEEEEcCCCHHHHHHHHHHHhCCCeEEEEECCcc-----------cCHHHHhcCCC
Confidence 4556667778964322 357899999 999999999999999999999998642 15678889999
Q ss_pred EEEEcCCCCccccccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhCCCeeEEEeeccCCCCCC-CCCccccCCcEE
Q 006864 286 FISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEEPPA-KDSKLVQHENVT 364 (628)
Q Consensus 286 vV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~ga~lDV~~~EP~~-~~~~L~~~~nvi 364 (628)
+|++|+|... +..++ ++....++++++|+|+++.+....+++.+.+. . ++....|.. +..+++...+++
T Consensus 68 vVilavp~~~-~~~vl-~~l~~~l~~~~iv~~~~svk~~~~~~~~~~~~-~-------~~v~~hP~~g~~~~~~~g~~~~ 137 (298)
T 2pv7_A 68 VVIVSVPINL-TLETI-ERLKPYLTENMLLADLTSVKREPLAKMLEVHT-G-------AVLGLHPMFGADIASMAKQVVV 137 (298)
T ss_dssp EEEECSCGGG-HHHHH-HHHGGGCCTTSEEEECCSCCHHHHHHHHHHCS-S-------EEEEEEECSCTTCSCCTTCEEE
T ss_pred EEEEeCCHHH-HHHHH-HHHHhhcCCCcEEEECCCCCcHHHHHHHHhcC-C-------CEEeeCCCCCCCchhhcCCeEE
Confidence 9999999554 55555 34455689999999999888766666665542 1 223333421 123567777899
Q ss_pred EcCCC
Q 006864 365 VTPHL 369 (628)
Q Consensus 365 lTPHi 369 (628)
+|||-
T Consensus 138 l~~~~ 142 (298)
T 2pv7_A 138 RCDGR 142 (298)
T ss_dssp EEEEE
T ss_pred EecCC
Confidence 99974
|
| >3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.07 E-value=1.3e-10 Score=120.73 Aligned_cols=110 Identities=16% Similarity=0.174 Sum_probs=90.8
Q ss_pred CCeEEEEecChhHHHHHHHHHcCCCEEEEECCCCC-hhHHHHcCCcc--cCHHHHhccCCEEEEcCCCCcccccccc--H
Q 006864 229 GKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAP-ADKARAVGVEL--VSFDQALATADFISLHMPLNPTTSKIFN--D 303 (628)
Q Consensus 229 GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~g~~~--~sl~ell~~aDvV~l~~Plt~~t~~li~--~ 303 (628)
.++|||||+|.||+.+|+.|...|++|.+||+... .+...+.|... .++++++++||+|++++|....++.++. +
T Consensus 7 ~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~e~~~~aDvvi~~vp~~~~~~~v~~~~~ 86 (303)
T 3g0o_A 7 DFHVGIVGLGSMGMGAARSCLRAGLSTWGADLNPQACANLLAEGACGAAASAREFAGVVDALVILVVNAAQVRQVLFGED 86 (303)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCSEEESSSTTTTTTCSEEEECCSSHHHHHHHHC--C
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHcCCccccCCHHHHHhcCCEEEEECCCHHHHHHHHhChh
Confidence 46899999999999999999999999999998752 23445557654 4889999999999999997656666542 4
Q ss_pred HHHhcCCCCcEEEEcCCCchhcHHHHHHHHhCCCe
Q 006864 304 ETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVV 338 (628)
Q Consensus 304 ~~l~~mk~gailIN~aRg~~vde~aL~~aL~~g~i 338 (628)
+.+..++++.++||+++......+.+.+.+++..+
T Consensus 87 ~l~~~l~~g~ivv~~st~~~~~~~~~~~~~~~~g~ 121 (303)
T 3g0o_A 87 GVAHLMKPGSAVMVSSTISSADAQEIAAALTALNL 121 (303)
T ss_dssp CCGGGSCTTCEEEECSCCCHHHHHHHHHHHHTTTC
T ss_pred hHHhhCCCCCEEEecCCCCHHHHHHHHHHHHHcCC
Confidence 45677999999999999999999999999887654
|
| >4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=1.4e-09 Score=111.86 Aligned_cols=131 Identities=18% Similarity=0.133 Sum_probs=97.2
Q ss_pred CeEEEEecChhHHHHHHHHHcCCCEEEEECCCCCh-hHHHHc-----------C--------------Cc-ccCHHHHhc
Q 006864 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPA-DKARAV-----------G--------------VE-LVSFDQALA 282 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~~-----------g--------------~~-~~sl~ell~ 282 (628)
++|||||.|.||+.+|+.+...|++|++||+.... +.+.+. + +. ..+++++++
T Consensus 5 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~ 84 (283)
T 4e12_A 5 TNVTVLGTGVLGSQIAFQTAFHGFAVTAYDINTDALDAAKKRFEGLAAVYEKEVAGAADGAAQKALGGIRYSDDLAQAVK 84 (283)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHSTTCTTTHHHHHHHHCEEESCHHHHTT
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHcCeEEeCCHHHHhc
Confidence 68999999999999999999999999999987522 222211 1 12 237889999
Q ss_pred cCCEEEEcCCCCccccccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhCC-CeeEEEeeccCCCCCCCCCccccCC
Q 006864 283 TADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSG-VVAQAALDVFTEEPPAKDSKLVQHE 361 (628)
Q Consensus 283 ~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~~vde~aL~~aL~~g-~i~ga~lDV~~~EP~~~~~~L~~~~ 361 (628)
+||+|+.++|.+.+.+..+-++....+++++++++.+.+- ....+.+++..+ ++ .++..|. |.+..+
T Consensus 85 ~aDlVi~av~~~~~~~~~v~~~l~~~~~~~~il~s~tS~~--~~~~la~~~~~~~~~--ig~h~~~--------p~~~~~ 152 (283)
T 4e12_A 85 DADLVIEAVPESLDLKRDIYTKLGELAPAKTIFATNSSTL--LPSDLVGYTGRGDKF--LALHFAN--------HVWVNN 152 (283)
T ss_dssp TCSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSSS--CHHHHHHHHSCGGGE--EEEEECS--------STTTSC
T ss_pred cCCEEEEeccCcHHHHHHHHHHHHhhCCCCcEEEECCCCC--CHHHHHhhcCCCcce--EEEccCC--------CcccCc
Confidence 9999999999887677766677778899999999765553 456777777543 44 5555543 345667
Q ss_pred cEEEcCCCCCC
Q 006864 362 NVTVTPHLGAS 372 (628)
Q Consensus 362 nvilTPHig~~ 372 (628)
.+.++||-..+
T Consensus 153 lvevv~~~~t~ 163 (283)
T 4e12_A 153 TAEVMGTTKTD 163 (283)
T ss_dssp EEEEEECTTSC
T ss_pred eEEEEeCCCCC
Confidence 88999995443
|
| >2iaf_A Hypothetical protein SDHL; MCSG, PSI2, MAD, structural genomics, L-serine dehydratase, structure initiative; 2.05A {Legionella pneumophila} SCOP: d.81.2.1 PDB: 2iqq_A | Back alignment and structure |
|---|
Probab=99.04 E-value=1.5e-10 Score=108.33 Aligned_cols=112 Identities=9% Similarity=-0.064 Sum_probs=80.0
Q ss_pred HHHHhHHHHHHhcCC---CCceEEEEEEeecCCCCCCCcccchHHHHHhhccccccCccc----------ccch--HhHH
Q 006864 421 AKKLGRLAVQLVSGG---SGIKSVKLIYRSARDPDDLDTRILRAMITKGIIEPISASFIN----------LVNA--DFTA 485 (628)
Q Consensus 421 AerlG~la~qL~~g~---~~~~~v~i~~~Gs~a~~~~~~~~~~~a~l~GlL~~~~~~~vn----------lvNA--~~iA 485 (628)
+-|+|+++++++... ..++++++.++|||+ .|+++|++|+|++.||+ ++.+++++ +.++ +.+|
T Consensus 13 pmraa~~f~~~l~~~~~l~~~~~v~v~LyGSla-~TgkGHgTD~Aii~GL~-G~~pd~~~~~~~~~~~~~i~~~~~l~la 90 (151)
T 2iaf_A 13 PMLAANAFLQLLEQKNLFDKTQRVKVELYGSLA-LTGKGHGTDKAILNGLE-NKAPETVDPASMIPRMHEILDSNLLNLA 90 (151)
T ss_dssp HHHHHHHHHHHHHHTTCTTTCCEEEEEEEHHHH-HTCTTSSHHHHHHHHTT-TCCCC-----CHHHHHHHHHHHTEEEET
T ss_pred HHHHHHHHHHHHhhccccCCCcEEEEEEEchHH-hhCCCccccHHHHhhhc-CCCCCccChhhhHHHHHHHHhcCccccC
Confidence 457899899988521 158999999999999 99999999999999999 55666676 4444 4578
Q ss_pred hhcCceEE----EEEeecCCCCCCCCceEEEEEEecccccceeeCCCcE-EEEEEEEEC-CeeEE
Q 006864 486 KQKGLRIS----EERVVADSSPEFPIDSIQVQLSNVDSKFAAAVSENGE-ISIEGKVKF-GIPHL 544 (628)
Q Consensus 486 ke~GI~i~----~~~~~~~~~~~~~~ntv~v~l~~~~~~~~~~~~~~~~-~~v~Gt~~g-G~~~I 544 (628)
++++|.+. +...+.. ....|||++++++. ..++.. .++.+.|+| |.++.
T Consensus 91 ~~~~i~f~~~~di~f~~~~-~lp~HpN~m~~~a~---------~~~g~~l~~~~~ySIGGGfI~~ 145 (151)
T 2iaf_A 91 GKKEIPFHEATDFLFLQKE-LLPKHSNGMRFSAF---------DGNANLLIEQVYYSIGGGFITT 145 (151)
T ss_dssp TTEEEECCHHHHEEEETTC-CCSSCSSEEEEEEE---------CTTSCEEEEEEEEECSSSCEEE
T ss_pred CcceeEEccccceeEcCCC-CCCCCCCeeEEEEE---------eCCCCEEEEEEEEEeCCceEEE
Confidence 88887765 1111111 11269999999998 344554 589999997 66543
|
| >2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A | Back alignment and structure |
|---|
Probab=99.02 E-value=2.1e-10 Score=117.81 Aligned_cols=165 Identities=18% Similarity=0.214 Sum_probs=116.6
Q ss_pred CCCHhHHHhhcC-----CCeEEEEcCCCCCCHHHHHhcCCcceeEEecccccCcccHhHHHhcCceEEcCCCCChhhHHH
Q 006864 118 DLSPEALCEKIS-----QCDALIVRSGTKVTRSVFEAANGKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAE 192 (628)
Q Consensus 118 ~~~~~el~~~~~-----~~d~liv~~~~~v~~~~l~~~~~~Lk~I~~~g~G~D~iDl~aa~~~GI~V~n~p~~~~~avAE 192 (628)
+.+++++.+.+. +++++.+. .+..++++..+ +.|.-.++...+++.++. +.|-. .|+|++..
T Consensus 48 ~~~~~~l~~~i~~l~~~~~~G~nvt--iP~k~~i~~~l-d~l~~~A~~~gavnti~~----~~g~~----~g~nTd~~-- 114 (275)
T 2hk9_A 48 EINPEELKKAFEGFKALKVKGINVT--VPFKEEIIPLL-DYVEDTAKEIGAVNTVKF----ENGKA----YGYNTDWI-- 114 (275)
T ss_dssp ECCGGGHHHHHHHHHHHTCCEEEEC--TTSTTTTGGGC-SEECHHHHHHTCCCEEEE----ETTEE----EEECCHHH--
T ss_pred ECCHHHHHHHHHHHHhCCCCEEEEC--ccCHHHHHHHH-HHhhHHHHHhCCcceEEe----eCCEE----EeecCCHH--
Confidence 456666655442 57788875 46777788776 478888888888998865 34522 35666443
Q ss_pred HHHHHHHHHHHchhHHHHHHHcCcccccccceeeecCCeEEEEecChhHHHHHHHHHcCCCEEEEECCCCCh--hHHHHc
Q 006864 193 HGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPA--DKARAV 270 (628)
Q Consensus 193 ~~l~l~L~~~R~i~~~~~~~~~g~W~~~~~~g~~l~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~--~~a~~~ 270 (628)
+++.++.| .+.++.|++++|||.|.+|+.+|+.|...|++|.+||+.... ..+...
T Consensus 115 ---G~~~~l~~-------------------~~~~~~~~~v~iiGaG~~g~aia~~L~~~g~~V~v~~r~~~~~~~l~~~~ 172 (275)
T 2hk9_A 115 ---GFLKSLKS-------------------LIPEVKEKSILVLGAGGASRAVIYALVKEGAKVFLWNRTKEKAIKLAQKF 172 (275)
T ss_dssp ---HHHHHHHH-------------------HCTTGGGSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSHHHHHHHTTTS
T ss_pred ---HHHHHHHH-------------------hCCCcCCCEEEEECchHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHc
Confidence 44444432 133578899999999999999999999999999999987422 112233
Q ss_pred CCccc-CHHHHhccCCEEEEcCCCCc--cccccccHHHHhcCCCCcEEEEcCC
Q 006864 271 GVELV-SFDQALATADFISLHMPLNP--TTSKIFNDETFAKMKKGVRIVNVAR 320 (628)
Q Consensus 271 g~~~~-sl~ell~~aDvV~l~~Plt~--~t~~li~~~~l~~mk~gailIN~aR 320 (628)
++... +++++++++|+|++++|... ++...+. +..++++.+++|++.
T Consensus 173 g~~~~~~~~~~~~~aDiVi~atp~~~~~~~~~~i~---~~~l~~g~~viDv~~ 222 (275)
T 2hk9_A 173 PLEVVNSPEEVIDKVQVIVNTTSVGLKDEDPEIFN---YDLIKKDHVVVDIIY 222 (275)
T ss_dssp CEEECSCGGGTGGGCSEEEECSSTTSSTTCCCSSC---GGGCCTTSEEEESSS
T ss_pred CCeeehhHHhhhcCCCEEEEeCCCCCCCCCCCCCC---HHHcCCCCEEEEcCC
Confidence 44444 78889999999999999764 2223443 456899999999987
|
| >2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=98.97 E-value=4.5e-09 Score=107.11 Aligned_cols=137 Identities=15% Similarity=0.147 Sum_probs=97.3
Q ss_pred CeEEEEecChhHHHHHHHHHcCCCEEEEECCCCC-hhHHHHcCCc---ccCHHHHhccCCEEEEcCCCCccccccccHHH
Q 006864 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAP-ADKARAVGVE---LVSFDQALATADFISLHMPLNPTTSKIFNDET 305 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~g~~---~~sl~ell~~aDvV~l~~Plt~~t~~li~~~~ 305 (628)
++|+|||+|.||+.+|+.|...|++|.+||+... .+...+.|+. ..+++++ ++||+|++++|. ..+..++ ++.
T Consensus 1 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~D~vi~av~~-~~~~~~~-~~l 77 (279)
T 2f1k_A 1 MKIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTCEKAVERQLVDEAGQDLSLL-QTAKIIFLCTPI-QLILPTL-EKL 77 (279)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTSCSEEESCGGGG-TTCSEEEECSCH-HHHHHHH-HHH
T ss_pred CEEEEEcCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHhCCCCccccCCHHHh-CCCCEEEEECCH-HHHHHHH-HHH
Confidence 4799999999999999999999999999998752 2334455653 2378888 999999999993 3344444 345
Q ss_pred HhcCCCCcEEEEcCCCchhcHHHHHHHHhCCCeeEEEeeccCCC---CCCCCCccccCCcEEEcCCCCCC
Q 006864 306 FAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEE---PPAKDSKLVQHENVTVTPHLGAS 372 (628)
Q Consensus 306 l~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~ga~lDV~~~E---P~~~~~~L~~~~nvilTPHig~~ 372 (628)
...++++++|||++..+....+.+.+.+. ++.+. .-++..+ |......++....++++|+-+..
T Consensus 78 ~~~~~~~~~vv~~~~~~~~~~~~~~~~~~--~~~~~-~p~~g~~~~gp~~a~~~~~~g~~~~~~~~~~~~ 144 (279)
T 2f1k_A 78 IPHLSPTAIVTDVASVKTAIAEPASQLWS--GFIGG-HPMAGTAAQGIDGAEENLFVNAPYVLTPTEYTD 144 (279)
T ss_dssp GGGSCTTCEEEECCSCCHHHHHHHHHHST--TCEEE-EECCCCSCSSGGGCCTTTTTTCEEEEEECTTCC
T ss_pred HhhCCCCCEEEECCCCcHHHHHHHHHHhC--CEeec-CcccCCccCCHHHHhHHHhCCCcEEEecCCCCC
Confidence 56689999999998887777777766654 34332 2333222 32233456777789999986654
|
| >1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6 | Back alignment and structure |
|---|
Probab=98.90 E-value=1.5e-09 Score=111.62 Aligned_cols=109 Identities=16% Similarity=0.272 Sum_probs=87.8
Q ss_pred CeEEEEecChhHHHHHHHHHcCCCEEEEECCCCC-hhHHHHcCCccc-CHHHHhccCCEEEEcCCCCcccccccc--HHH
Q 006864 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAP-ADKARAVGVELV-SFDQALATADFISLHMPLNPTTSKIFN--DET 305 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~g~~~~-sl~ell~~aDvV~l~~Plt~~t~~li~--~~~ 305 (628)
++|+|||+|.||+.+|+.|...|++|.+||+... .+...+.|+... +++++++++|+|++++|....++.++. ++.
T Consensus 6 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~D~vi~~v~~~~~~~~~~~~~~~l 85 (299)
T 1vpd_A 6 MKVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPEAIADVIAAGAETASTAKAIAEQCDVIITMLPNSPHVKEVALGENGI 85 (299)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTCH
T ss_pred ceEEEECchHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHCCCeecCCHHHHHhCCCEEEEECCCHHHHHHHHhCcchH
Confidence 4899999999999999999999999999998752 233344466543 789999999999999996666666653 344
Q ss_pred HhcCCCCcEEEEcCCCchhcHHHHHHHHhCCCe
Q 006864 306 FAKMKKGVRIVNVARGGVIDEEALVRALDSGVV 338 (628)
Q Consensus 306 l~~mk~gailIN~aRg~~vde~aL~~aL~~g~i 338 (628)
...++++.+|||++.|...+.+.|.+.+....+
T Consensus 86 ~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~g~ 118 (299)
T 1vpd_A 86 IEGAKPGTVLIDMSSIAPLASREISDALKAKGV 118 (299)
T ss_dssp HHHCCTTCEEEECSCCCHHHHHHHHHHHHTTTC
T ss_pred hhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCC
Confidence 567899999999999988888889998877433
|
| >4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A | Back alignment and structure |
|---|
Probab=98.89 E-value=3.4e-09 Score=117.19 Aligned_cols=120 Identities=16% Similarity=0.190 Sum_probs=95.5
Q ss_pred CCeEEEEecChhHHHHHHHHHcCCCEEEEECCCCCh-hHHHHc---CCc---ccCHHHHhc---cCCEEEEcCCCCcccc
Q 006864 229 GKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPA-DKARAV---GVE---LVSFDQALA---TADFISLHMPLNPTTS 298 (628)
Q Consensus 229 GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~~---g~~---~~sl~ell~---~aDvV~l~~Plt~~t~ 298 (628)
.++|||||+|.||+.+|++|...|++|.+||+.... +...+. +.. ..+++++++ ++|+|++++|..+.++
T Consensus 4 ~~kIgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~g~~i~~~~s~~e~v~~l~~aDvVil~Vp~~~~v~ 83 (484)
T 4gwg_A 4 QADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTKVVGAQSLKEMVSKLKKPRRIILLVKAGQAVD 83 (484)
T ss_dssp CBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHHTTTTTSSCEECSSHHHHHHTBCSSCEEEECSCSSHHHH
T ss_pred CCEEEEEChhHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhcccCCCceeccCCHHHHHhhccCCCEEEEecCChHHHH
Confidence 368999999999999999999999999999998632 223332 222 247888887 5999999999876777
Q ss_pred ccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhCCCeeEEEeeccCCC
Q 006864 299 KIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEE 349 (628)
Q Consensus 299 ~li~~~~l~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~ga~lDV~~~E 349 (628)
.++ ++.+..|++|.+|||++++...+...+.+.+++..+.....-|++.+
T Consensus 84 ~vl-~~l~~~L~~g~iIId~st~~~~~t~~~~~~l~~~Gi~fvd~pVsGg~ 133 (484)
T 4gwg_A 84 DFI-EKLVPLLDTGDIIIDGGNSEYRDTTRRCRDLKAKGILFVGSGVSGGE 133 (484)
T ss_dssp HHH-HHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEEEEESHH
T ss_pred HHH-HHHHHhcCCCCEEEEcCCCCchHHHHHHHHHHhhccccccCCccCCH
Confidence 776 56778899999999999999999999999998776654444566554
|
| >2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET: NAP; 2.20A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.36 E-value=2.7e-10 Score=111.84 Aligned_cols=94 Identities=16% Similarity=0.253 Sum_probs=75.9
Q ss_pred ecCCeEEEEecChhHHHHHHHHHcCCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEcCCCCccccccccHHHH
Q 006864 227 LVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETF 306 (628)
Q Consensus 227 l~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~sl~ell~~aDvV~l~~Plt~~t~~li~~~~l 306 (628)
+.+++|||||+|.||+.+|++|...|++|.+||+....+.....|+...++++++++||+|++++|.. .++.++ .+
T Consensus 17 ~~~~~I~iIG~G~mG~~la~~L~~~G~~V~~~~r~~~~~~~~~~g~~~~~~~~~~~~aDvVilav~~~-~~~~v~---~l 92 (201)
T 2yjz_A 17 EKQGVVCIFGTGDFGKSLGLKMLQCGYSVVFGSRNPQVSSLLPRGAEVLCYSEAASRSDVIVLAVHRE-HYDFLA---EL 92 (201)
Confidence 67889999999999999999999999999999987542222334555557889999999999999964 566666 24
Q ss_pred hcCCCCcEEEEcCCCchh
Q 006864 307 AKMKKGVRIVNVARGGVI 324 (628)
Q Consensus 307 ~~mk~gailIN~aRg~~v 324 (628)
..++++.+|||+++|-..
T Consensus 93 ~~~~~~~ivI~~~~G~~~ 110 (201)
T 2yjz_A 93 ADSLKGRVLIDVSNNQKM 110 (201)
Confidence 557789999999998754
|
| >3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP} | Back alignment and structure |
|---|
Probab=98.85 E-value=2e-09 Score=108.45 Aligned_cols=102 Identities=20% Similarity=0.244 Sum_probs=66.4
Q ss_pred cccccccceeeecCCeEEEEecChhHHHHHHHHHcCCCEEEEECCCCCh---------------hH-HHHcC-CcccCHH
Q 006864 216 KWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPA---------------DK-ARAVG-VELVSFD 278 (628)
Q Consensus 216 ~W~~~~~~g~~l~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~---------------~~-a~~~g-~~~~sl~ 278 (628)
+|....+...++.+++|||||+|.||+.+|+.|...|++|++||+.... .. ....+ ....++.
T Consensus 6 ~~~~~~~~~~~~~~~kIgiIG~G~mG~alA~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (245)
T 3dtt_A 6 IHHHHHHENLYFQGMKIAVLGTGTVGRTMAGALADLGHEVTIGTRDPKATLARAEPDAMGAPPFSQWLPEHPHVHLAAFA 85 (245)
T ss_dssp -------------CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHTCC-------CCHHHHGGGSTTCEEEEHH
T ss_pred ccccccccccccCCCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCChhhhhhhhhhhhhcchhhhHHHhhcCceeccCHH
Confidence 4444456678999999999999999999999999999999999987432 11 11223 2345799
Q ss_pred HHhccCCEEEEcCCCCccccccccHHH-HhcCCCCcEEEEcCC
Q 006864 279 QALATADFISLHMPLNPTTSKIFNDET-FAKMKKGVRIVNVAR 320 (628)
Q Consensus 279 ell~~aDvV~l~~Plt~~t~~li~~~~-l~~mk~gailIN~aR 320 (628)
+++++||+|++++|..... ..+. +. ...+ ++.+|||++-
T Consensus 86 e~~~~aDvVilavp~~~~~-~~~~-~i~~~~l-~g~ivi~~s~ 125 (245)
T 3dtt_A 86 DVAAGAELVVNATEGASSI-AALT-AAGAENL-AGKILVDIAN 125 (245)
T ss_dssp HHHHHCSEEEECSCGGGHH-HHHH-HHCHHHH-TTSEEEECCC
T ss_pred HHHhcCCEEEEccCcHHHH-HHHH-Hhhhhhc-CCCEEEECCC
Confidence 9999999999999955432 2222 22 2234 8999999993
|
| >3fr7_A Putative ketol-acid reductoisomerase (OS05G057370 protein); rossmann fold, NADPH, knotted protein, branched-chain amino biosynthesis; 1.55A {Oryza sativa japonica group} PDB: 3fr8_A* 1qmg_A* 1yve_I* | Back alignment and structure |
|---|
Probab=98.85 E-value=1.7e-09 Score=118.28 Aligned_cols=104 Identities=20% Similarity=0.320 Sum_probs=80.2
Q ss_pred cCcccccccceeeecC-CeEEEEecChhHHHHHHHHHcC------CCEEEEECCC-C-ChhHHHHcCCcc-----cCHHH
Q 006864 214 AGKWLRSKYVGVSLVG-KTLAVMGFGKVGSEVARRAKGL------GMNVIAHDPY-A-PADKARAVGVEL-----VSFDQ 279 (628)
Q Consensus 214 ~g~W~~~~~~g~~l~G-ktiGIIGlG~IG~~vA~~l~~~------G~~V~~~d~~-~-~~~~a~~~g~~~-----~sl~e 279 (628)
.|+|... .....|+| |+|||||+|.||.++|+.|+.. |++|++.++. . ..+.+.+.|+.. .++.+
T Consensus 39 ~~~w~~~-~~~~~L~GiKkIgIIGlGsMG~AmA~nLr~s~~~~g~G~~ViVg~r~~sks~e~A~e~G~~v~d~ta~s~aE 117 (525)
T 3fr7_A 39 GGRNLFP-LLPEAFKGIKQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKIGLRKGSKSFDEARAAGFTEESGTLGDIWE 117 (525)
T ss_dssp CCGGGGG-GHHHHTTTCSEEEEECCTTHHHHHHHHHHHHHHHTTCCCEEEEEECTTCSCHHHHHHTTCCTTTTCEEEHHH
T ss_pred ccccccc-cChHHhcCCCEEEEEeEhHHHHHHHHHHHhcccccCCCCEEEEEeCCchhhHHHHHHCCCEEecCCCCCHHH
Confidence 3456542 22457899 9999999999999999999987 9998765443 2 455677788864 58999
Q ss_pred HhccCCEEEEcCCCCccccccccHHHHhcCCCCcEEEEcCCC
Q 006864 280 ALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARG 321 (628)
Q Consensus 280 ll~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg 321 (628)
++++||+|++++|..... .++. +.+..||+|++| -.+-|
T Consensus 118 Aa~~ADVVILaVP~~~~~-eVl~-eI~p~LK~GaIL-s~AaG 156 (525)
T 3fr7_A 118 TVSGSDLVLLLISDAAQA-DNYE-KIFSHMKPNSIL-GLSHG 156 (525)
T ss_dssp HHHHCSEEEECSCHHHHH-HHHH-HHHHHSCTTCEE-EESSS
T ss_pred HHhcCCEEEECCChHHHH-HHHH-HHHHhcCCCCeE-EEeCC
Confidence 999999999999976553 4565 688899999995 44445
|
| >3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri} | Back alignment and structure |
|---|
Probab=98.85 E-value=3.1e-09 Score=109.41 Aligned_cols=107 Identities=18% Similarity=0.251 Sum_probs=86.4
Q ss_pred CeEEEEecChhHHHHHHHHHcCCCEEEEECCCCC-hhHHHHcCCccc-CHHHHhccCCEEEEcCCCCcccccccc--HHH
Q 006864 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAP-ADKARAVGVELV-SFDQALATADFISLHMPLNPTTSKIFN--DET 305 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~g~~~~-sl~ell~~aDvV~l~~Plt~~t~~li~--~~~ 305 (628)
++|||||+|.||+.+|+.|...|++|.+||+... .+...+.|+... +++++++++|+|++++|....++.++. ++.
T Consensus 5 ~~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~D~vi~~vp~~~~~~~v~~~~~~l 84 (301)
T 3cky_A 5 IKIGFIGLGAMGKPMAINLLKEGVTVYAFDLMEANVAAVVAQGAQACENNQKVAAASDIIFTSLPNAGIVETVMNGPGGV 84 (301)
T ss_dssp CEEEEECCCTTHHHHHHHHHHTTCEEEEECSSHHHHHHHHTTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTCH
T ss_pred CEEEEECccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHCCCeecCCHHHHHhCCCEEEEECCCHHHHHHHHcCcchH
Confidence 6899999999999999999999999999998742 222333466543 789999999999999997666666664 255
Q ss_pred HhcCCCCcEEEEcCCCchhcHHHHHHHHhCC
Q 006864 306 FAKMKKGVRIVNVARGGVIDEEALVRALDSG 336 (628)
Q Consensus 306 l~~mk~gailIN~aRg~~vde~aL~~aL~~g 336 (628)
...++++.+||++++|...+.+.+.+.+...
T Consensus 85 ~~~l~~~~~vv~~~~~~~~~~~~l~~~~~~~ 115 (301)
T 3cky_A 85 LSACKAGTVIVDMSSVSPSSTLKMAKVAAEK 115 (301)
T ss_dssp HHHSCTTCEEEECCCCCHHHHHHHHHHHHHT
T ss_pred hhcCCCCCEEEECCCCCHHHHHHHHHHHHHc
Confidence 5678999999999999877888888888764
|
| >1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=98.84 E-value=3e-09 Score=109.14 Aligned_cols=106 Identities=19% Similarity=0.250 Sum_probs=85.4
Q ss_pred CeEEEEecChhHHHHHHHHHcCCCEEEEECCCC-ChhHHHHcCCcc-cCHHHHhccCCEEEEcCCCCccccccccH--HH
Q 006864 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA-PADKARAVGVEL-VSFDQALATADFISLHMPLNPTTSKIFND--ET 305 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~g~~~-~sl~ell~~aDvV~l~~Plt~~t~~li~~--~~ 305 (628)
++|||||+|.||+.+|+.|...|++|.+|| +. ..+...+.|+.. .+++++++++|+|++++|....++.++.. +.
T Consensus 4 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~D~vi~~vp~~~~~~~v~~~~~~l 82 (295)
T 1yb4_A 4 MKLGFIGLGIMGSPMAINLARAGHQLHVTT-IGPVADELLSLGAVNVETARQVTEFADIIFIMVPDTPQVEDVLFGEHGC 82 (295)
T ss_dssp CEEEECCCSTTHHHHHHHHHHTTCEEEECC-SSCCCHHHHTTTCBCCSSHHHHHHTCSEEEECCSSHHHHHHHHHSTTSS
T ss_pred CEEEEEccCHHHHHHHHHHHhCCCEEEEEc-CHHHHHHHHHcCCcccCCHHHHHhcCCEEEEECCCHHHHHHHHhCchhH
Confidence 589999999999999999999999999999 65 333344446654 37899999999999999966655555532 44
Q ss_pred HhcCCCCcEEEEcCCCchhcHHHHHHHHhCC
Q 006864 306 FAKMKKGVRIVNVARGGVIDEEALVRALDSG 336 (628)
Q Consensus 306 l~~mk~gailIN~aRg~~vde~aL~~aL~~g 336 (628)
...++++.+||+++.|...+.+.+.+.+.+.
T Consensus 83 ~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~ 113 (295)
T 1yb4_A 83 AKTSLQGKTIVDMSSISPIETKRFAQRVNEM 113 (295)
T ss_dssp TTSCCTTEEEEECSCCCHHHHHHHHHHHHTT
T ss_pred hhcCCCCCEEEECCCCCHHHHHHHHHHHHHc
Confidence 4568999999999999888888899988874
|
| >2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A* | Back alignment and structure |
|---|
Probab=98.84 E-value=3.5e-09 Score=108.74 Aligned_cols=106 Identities=18% Similarity=0.312 Sum_probs=84.0
Q ss_pred CeEEEEecChhHHHHHHHHHcCCCEEEEECCCCC-hhHHHHcCCccc-CHHHHhccCCEEEEcCCCCccccccccH--HH
Q 006864 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAP-ADKARAVGVELV-SFDQALATADFISLHMPLNPTTSKIFND--ET 305 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~g~~~~-sl~ell~~aDvV~l~~Plt~~t~~li~~--~~ 305 (628)
++|||||+|.||+.+|+.|...|++|.+||+... .+...+.|+... +++++++++|+|++|+|....++.++.. ..
T Consensus 1 m~i~iiG~G~mG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Dvvi~~vp~~~~~~~v~~~~~~~ 80 (296)
T 2gf2_A 1 MPVGFIGLGNMGNPMAKNLMKHGYPLIIYDVFPDACKEFQDAGEQVVSSPADVAEKADRIITMLPTSINAIEAYSGANGI 80 (296)
T ss_dssp CCEEEECCSTTHHHHHHHHHHTTCCEEEECSSTHHHHHHHTTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTSG
T ss_pred CeEEEEeccHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEeCCCHHHHHHHHhCchhH
Confidence 4799999999999999999999999999998753 233444566543 7899999999999999977666665543 24
Q ss_pred HhcCCCCcEEEEcCCCchhcHHHHHHHHhC
Q 006864 306 FAKMKKGVRIVNVARGGVIDEEALVRALDS 335 (628)
Q Consensus 306 l~~mk~gailIN~aRg~~vde~aL~~aL~~ 335 (628)
+..++++.++|+++.....+.+.+.+.+.+
T Consensus 81 ~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~ 110 (296)
T 2gf2_A 81 LKKVKKGSLLIDSSTIDPAVSKELAKEVEK 110 (296)
T ss_dssp GGTCCTTCEEEECSCCCHHHHHHHHHHHHH
T ss_pred HhcCCCCCEEEECCCCCHHHHHHHHHHHHH
Confidence 556899999999888777777777777764
|
| >2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A* | Back alignment and structure |
|---|
Probab=98.84 E-value=3.8e-09 Score=107.91 Aligned_cols=106 Identities=13% Similarity=0.144 Sum_probs=84.6
Q ss_pred CeEEEEecChhHHHHHHHHHcCCCEEEEECCCCCh-hHHHHcCCcccCHHHHhccCCEEEEcCCCCccccccccHHHHhc
Q 006864 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPA-DKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAK 308 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~~g~~~~sl~ell~~aDvV~l~~Plt~~t~~li~~~~l~~ 308 (628)
++|||||+|.||+.+|+.|.. |++|.+||+.... +...+.|+...+++++++++|+|++|+|....++.++ ++....
T Consensus 2 ~~i~iiG~G~~G~~~a~~l~~-g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~D~vi~~v~~~~~~~~v~-~~l~~~ 79 (289)
T 2cvz_A 2 EKVAFIGLGAMGYPMAGHLAR-RFPTLVWNRTFEKALRHQEEFGSEAVPLERVAEARVIFTCLPTTREVYEVA-EALYPY 79 (289)
T ss_dssp CCEEEECCSTTHHHHHHHHHT-TSCEEEECSSTHHHHHHHHHHCCEECCGGGGGGCSEEEECCSSHHHHHHHH-HHHTTT
T ss_pred CeEEEEcccHHHHHHHHHHhC-CCeEEEEeCCHHHHHHHHHCCCcccCHHHHHhCCCEEEEeCCChHHHHHHH-HHHHhh
Confidence 479999999999999999999 9999999987532 3333345544447788899999999999665566555 445567
Q ss_pred CCCCcEEEEcCCCchhcHHHHHHHHhCCC
Q 006864 309 MKKGVRIVNVARGGVIDEEALVRALDSGV 337 (628)
Q Consensus 309 mk~gailIN~aRg~~vde~aL~~aL~~g~ 337 (628)
++++.++|+++.+...+.+.+.+.+.+..
T Consensus 80 l~~~~~vv~~s~~~~~~~~~l~~~~~~~g 108 (289)
T 2cvz_A 80 LREGTYWVDATSGEPEASRRLAERLREKG 108 (289)
T ss_dssp CCTTEEEEECSCCCHHHHHHHHHHHHTTT
T ss_pred CCCCCEEEECCCCCHHHHHHHHHHHHHcC
Confidence 89999999999998888889999988743
|
| >2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A* | Back alignment and structure |
|---|
Probab=98.82 E-value=8.7e-09 Score=114.03 Aligned_cols=112 Identities=15% Similarity=0.141 Sum_probs=88.9
Q ss_pred eecCCeEEEEecChhHHHHHHHHHcCCCEEEEECCCCCh-hHHHHc----CCcc-cCHHHHhcc---CCEEEEcCCCCcc
Q 006864 226 SLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPA-DKARAV----GVEL-VSFDQALAT---ADFISLHMPLNPT 296 (628)
Q Consensus 226 ~l~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~~----g~~~-~sl~ell~~---aDvV~l~~Plt~~ 296 (628)
-+..++|||||+|.||+.+|++|...|++|.+||+.... +...+. |+.. .+++++++. ||+|++++|..+.
T Consensus 12 ~~~~~~IgvIGlG~MG~~lA~~La~~G~~V~v~~r~~~~~~~l~~~~~~~gi~~~~s~~e~v~~l~~aDvVil~Vp~~~~ 91 (480)
T 2zyd_A 12 HMSKQQIGVVGMAVMGRNLALNIESRGYTVSIFNRSREKTEEVIAENPGKKLVPYYTVKEFVESLETPRRILLMVKAGAG 91 (480)
T ss_dssp ---CBSEEEECCSHHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHSTTSCEEECSSHHHHHHTBCSSCEEEECSCSSSH
T ss_pred ccCCCeEEEEccHHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHhhCCCCCeEEeCCHHHHHhCCCCCCEEEEECCCHHH
Confidence 355679999999999999999999999999999987522 222222 5543 378898887 9999999997667
Q ss_pred ccccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhCCCe
Q 006864 297 TSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVV 338 (628)
Q Consensus 297 t~~li~~~~l~~mk~gailIN~aRg~~vde~aL~~aL~~g~i 338 (628)
++.++ ++....+++|.+|||++.|...+.+.+.+.+++..+
T Consensus 92 v~~vl-~~l~~~l~~g~iIId~s~g~~~~t~~l~~~l~~~g~ 132 (480)
T 2zyd_A 92 TDAAI-DSLKPYLDKGDIIIDGGNTFFQDTIRRNRELSAEGF 132 (480)
T ss_dssp HHHHH-HHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHH-HHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHCCC
Confidence 77777 456677999999999999998888888888876444
|
| >2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.80 E-value=7.4e-09 Score=107.64 Aligned_cols=107 Identities=16% Similarity=0.198 Sum_probs=85.6
Q ss_pred CeEEEEecChhHHHHHHHHHcCCCEEEEECCCCC-hhHHHHcCCccc-CHHHHhccCCEEEEcCCCCccccccccH--HH
Q 006864 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAP-ADKARAVGVELV-SFDQALATADFISLHMPLNPTTSKIFND--ET 305 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~g~~~~-sl~ell~~aDvV~l~~Plt~~t~~li~~--~~ 305 (628)
++|||||+|.||+.+|+.|...|++|.+||+... .+...+.|+... +++++++++|+|++++|....++.++.. ..
T Consensus 31 ~~I~iIG~G~mG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~DvVi~av~~~~~~~~v~~~~~~~ 110 (316)
T 2uyy_A 31 KKIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFIQEGARLGRTPAEVVSTCDITFACVSDPKAAKDLVLGPSGV 110 (316)
T ss_dssp SCEEEECCSHHHHHHHHHHHHTTCCEEEECSSGGGGHHHHHTTCEECSCHHHHHHHCSEEEECCSSHHHHHHHHHSTTCG
T ss_pred CeEEEEcccHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHcCCEEcCCHHHHHhcCCEEEEeCCCHHHHHHHHcCchhH
Confidence 6899999999999999999999999999998753 233445566543 7889999999999999966556555433 23
Q ss_pred HhcCCCCcEEEEcCCCchhcHHHHHHHHhCC
Q 006864 306 FAKMKKGVRIVNVARGGVIDEEALVRALDSG 336 (628)
Q Consensus 306 l~~mk~gailIN~aRg~~vde~aL~~aL~~g 336 (628)
+..++++.++|+++++.....+.+.+.+...
T Consensus 111 ~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~ 141 (316)
T 2uyy_A 111 LQGIRPGKCYVDMSTVDADTVTELAQVIVSR 141 (316)
T ss_dssp GGGCCTTCEEEECSCCCHHHHHHHHHHHHHT
T ss_pred hhcCCCCCEEEECCCCCHHHHHHHHHHHHHc
Confidence 4678999999999998887788888888643
|
| >1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6 | Back alignment and structure |
|---|
Probab=98.77 E-value=9.8e-09 Score=103.78 Aligned_cols=102 Identities=15% Similarity=0.228 Sum_probs=80.5
Q ss_pred CeEEEEecChhHHHHHHHHHcCCCEEEEECCCCCh---hHHHHcCCcccCHHHHhccCCEEEEcCCCCccccccccHHHH
Q 006864 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPA---DKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETF 306 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~---~~a~~~g~~~~sl~ell~~aDvV~l~~Plt~~t~~li~~~~l 306 (628)
++|||||+|.||+.+|+.|...|++|++||+.... +...+.|+. .++++++++||+|++++|.....+.+ .+..
T Consensus 1 M~I~iIG~G~mG~~la~~l~~~g~~V~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~aDvvi~~v~~~~~~~~~--~~~~ 77 (264)
T 1i36_A 1 LRVGFIGFGEVAQTLASRLRSRGVEVVTSLEGRSPSTIERARTVGVT-ETSEEDVYSCPVVISAVTPGVALGAA--RRAG 77 (264)
T ss_dssp CEEEEESCSHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHTCE-ECCHHHHHTSSEEEECSCGGGHHHHH--HHHH
T ss_pred CeEEEEechHHHHHHHHHHHHCCCeEEEeCCccCHHHHHHHHHCCCc-CCHHHHHhcCCEEEEECCCHHHHHHH--HHHH
Confidence 47999999999999999999999999999884222 223345766 77889999999999999965544443 4555
Q ss_pred hcCCCCcEEEEcCCCchhcHHHHHHHHhCC
Q 006864 307 AKMKKGVRIVNVARGGVIDEEALVRALDSG 336 (628)
Q Consensus 307 ~~mk~gailIN~aRg~~vde~aL~~aL~~g 336 (628)
..+++ ++||++.+...+.+.+.+.+...
T Consensus 78 ~~~~~--~vi~~s~~~~~~~~~l~~~~~~~ 105 (264)
T 1i36_A 78 RHVRG--IYVDINNISPETVRMASSLIEKG 105 (264)
T ss_dssp TTCCS--EEEECSCCCHHHHHHHHHHCSSS
T ss_pred HhcCc--EEEEccCCCHHHHHHHHHHHhhC
Confidence 66776 99999988888888888888663
|
| >2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.76 E-value=2.1e-08 Score=111.33 Aligned_cols=109 Identities=14% Similarity=0.196 Sum_probs=88.5
Q ss_pred CCeEEEEecChhHHHHHHHHHcCCCEEEEECCCCCh-hHHHH-----cCCcc-cCHHHHhcc---CCEEEEcCCCCcccc
Q 006864 229 GKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPA-DKARA-----VGVEL-VSFDQALAT---ADFISLHMPLNPTTS 298 (628)
Q Consensus 229 GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~-----~g~~~-~sl~ell~~---aDvV~l~~Plt~~t~ 298 (628)
.++|||||+|.||+.+|+.|...|++|.+||+.... +...+ .|+.. .+++++++. ||+|++++|-...++
T Consensus 10 ~~~IgvIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~~gi~~~~s~~e~v~~l~~aDvVil~Vp~~~~v~ 89 (497)
T 2p4q_A 10 SADFGLIGLAVMGQNLILNAADHGFTVCAYNRTQSKVDHFLANEAKGKSIIGATSIEDFISKLKRPRKVMLLVKAGAPVD 89 (497)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSHHHHHHHHTTTTTSSEECCSSHHHHHHTSCSSCEEEECCCSSHHHH
T ss_pred CCCEEEEeeHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHcccccCCCeEEeCCHHHHHhcCCCCCEEEEEcCChHHHH
Confidence 358999999999999999999999999999998632 23333 35543 378898877 999999999766777
Q ss_pred ccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhCCCe
Q 006864 299 KIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVV 338 (628)
Q Consensus 299 ~li~~~~l~~mk~gailIN~aRg~~vde~aL~~aL~~g~i 338 (628)
.++ ++....+++|.+|||++.+...+...+.+.+.+..+
T Consensus 90 ~vl-~~l~~~l~~g~iIId~s~~~~~~~~~l~~~l~~~g~ 128 (497)
T 2p4q_A 90 ALI-NQIVPLLEKGDIIIDGGNSHFPDSNRRYEELKKKGI 128 (497)
T ss_dssp HHH-HHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTC
T ss_pred HHH-HHHHHhCCCCCEEEECCCCChhHHHHHHHHHHHcCC
Confidence 777 556678999999999999998888888888876433
|
| >1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=98.75 E-value=2e-08 Score=104.22 Aligned_cols=130 Identities=16% Similarity=0.176 Sum_probs=88.1
Q ss_pred ecCCeEEEEecChhHHHHHHHHHcCCCEEEEECCCCC-hhHHHHc-------CCccc-CHHHHhccCCEEEEcCCCCccc
Q 006864 227 LVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAP-ADKARAV-------GVELV-SFDQALATADFISLHMPLNPTT 297 (628)
Q Consensus 227 l~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~-------g~~~~-sl~ell~~aDvV~l~~Plt~~t 297 (628)
-+.|+|||||+|.||..+|+.+. .|++|++||+... .+.+.+. ++... ++++ +++||+|+.++|-..+.
T Consensus 10 ~~~~~V~vIG~G~MG~~iA~~la-aG~~V~v~d~~~~~~~~~~~~l~~~~~~~i~~~~~~~~-~~~aDlVieavpe~~~v 87 (293)
T 1zej_A 10 HHHMKVFVIGAGLMGRGIAIAIA-SKHEVVLQDVSEKALEAAREQIPEELLSKIEFTTTLEK-VKDCDIVMEAVFEDLNT 87 (293)
T ss_dssp --CCEEEEECCSHHHHHHHHHHH-TTSEEEEECSCHHHHHHHHHHSCGGGGGGEEEESSCTT-GGGCSEEEECCCSCHHH
T ss_pred cCCCeEEEEeeCHHHHHHHHHHH-cCCEEEEEECCHHHHHHHHHHHHHHHhCCeEEeCCHHH-HcCCCEEEEcCcCCHHH
Confidence 35699999999999999999999 9999999998752 2333333 34333 5666 89999999999988876
Q ss_pred cccccHHHHhcCCCCcEEE-EcCCCchhcHHHHHHHHhCCCeeEEEeeccCCCCCCCCCccccCCcEEEcCCCCCC
Q 006864 298 SKIFNDETFAKMKKGVRIV-NVARGGVIDEEALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGAS 372 (628)
Q Consensus 298 ~~li~~~~l~~mk~gailI-N~aRg~~vde~aL~~aL~~g~i~ga~lDV~~~EP~~~~~~L~~~~nvilTPHig~~ 372 (628)
+..+-.+ ++.+ ++++++ |++.-.+ ..+.+.++. .....++..|. |.+ ..+-+.++|+-.++
T Consensus 88 k~~l~~~-l~~~-~~~IlasntSti~~---~~~a~~~~~-~~r~~G~Hf~~--Pv~------~~~lveiv~g~~t~ 149 (293)
T 1zej_A 88 KVEVLRE-VERL-TNAPLCSNTSVISV---DDIAERLDS-PSRFLGVHWMN--PPH------VMPLVEIVISRFTD 149 (293)
T ss_dssp HHHHHHH-HHTT-CCSCEEECCSSSCH---HHHHTTSSC-GGGEEEEEECS--STT------TCCEEEEEECTTCC
T ss_pred HHHHHHH-HhcC-CCCEEEEECCCcCH---HHHHHHhhc-ccceEeEEecC--ccc------cCCEEEEECCCCCC
Confidence 6555333 6667 998885 7776443 344444432 22235666665 432 24566677765544
|
| >1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1 | Back alignment and structure |
|---|
Probab=98.74 E-value=1.5e-08 Score=108.11 Aligned_cols=106 Identities=21% Similarity=0.283 Sum_probs=86.0
Q ss_pred eecCCeEEEEecChhHHHHHHHHHcCCCEEEEECCCCCh--hHHHHcCCcccCHHHHhc-cCCEEEEcCCCCcccccccc
Q 006864 226 SLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPA--DKARAVGVELVSFDQALA-TADFISLHMPLNPTTSKIFN 302 (628)
Q Consensus 226 ~l~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~--~~a~~~g~~~~sl~ell~-~aDvV~l~~Plt~~t~~li~ 302 (628)
+|.|||++|+|+|+||+.+|++|.++|++|+++|+.... +.+.+.+.+.++.++++. +||+++.|. +.++|+
T Consensus 170 ~L~GktV~V~G~G~VG~~~A~~L~~~GakVvv~D~~~~~l~~~a~~~ga~~v~~~~ll~~~~DIvip~a-----~~~~I~ 244 (364)
T 1leh_A 170 SLEGLAVSVQGLGNVAKALCKKLNTEGAKLVVTDVNKAAVSAAVAEEGADAVAPNAIYGVTCDIFAPCA-----LGAVLN 244 (364)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHCCEECCGGGTTTCCCSEEEECS-----CSCCBS
T ss_pred CCCcCEEEEECchHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHcCCEEEChHHHhccCCcEeeccc-----hHHHhC
Confidence 699999999999999999999999999999999987532 223445777778888887 899998874 577888
Q ss_pred HHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhCCCe
Q 006864 303 DETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVV 338 (628)
Q Consensus 303 ~~~l~~mk~gailIN~aRg~~vde~aL~~aL~~g~i 338 (628)
.+.++.|+ ..+|++.+++.+.++++ .+.|+++.+
T Consensus 245 ~~~~~~lg-~~iV~e~An~p~t~~ea-~~~L~~~Gi 278 (364)
T 1leh_A 245 DFTIPQLK-AKVIAGSADNQLKDPRH-GKYLHELGI 278 (364)
T ss_dssp TTHHHHCC-CSEECCSCSCCBSSHHH-HHHHHHHTC
T ss_pred HHHHHhCC-CcEEEeCCCCCcccHHH-HHHHHhCCC
Confidence 88888885 57899999999888664 456666555
|
| >1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A | Back alignment and structure |
|---|
Probab=98.71 E-value=3.3e-07 Score=97.59 Aligned_cols=180 Identities=14% Similarity=0.151 Sum_probs=114.7
Q ss_pred CCeEEEEcCCCCCCHHHHHhcCCcceeEEecccccCcccHhHHHhcCceEEcC---CCCC-----hhhHHHHH--HHHHH
Q 006864 130 QCDALIVRSGTKVTRSVFEAANGKLKVVGRAGVGIDNVDLQAATEFGCLVVNA---PIAN-----TVAAAEHG--IALLA 199 (628)
Q Consensus 130 ~~d~liv~~~~~v~~~~l~~~~~~Lk~I~~~g~G~D~iDl~aa~~~GI~V~n~---p~~~-----~~avAE~~--l~l~L 199 (628)
++|+|+- ...+...+. ....+++.++...-..++.-.++++.++||...|. |.-. -.++++.+ ++.++
T Consensus 66 ~ad~i~~-vksP~~~~~-~~~~~g~~~~~y~~~~~~~~l~~~l~~~gi~~~~~etvp~k~~~~~~l~~~s~~Ag~~a~~~ 143 (361)
T 1pjc_A 66 SREMVVK-VKEPLPAEY-DLMQKDQLLFTYLHLAAARELTEQLMRVGLTAIAYETVELPNRSLPLLTPMSIIAGRLSVQF 143 (361)
T ss_dssp TSSEEEC-SSCCCGGGG-GGCCTTCEEEECCCGGGCHHHHHHHHHHTCEEEEGGGCCCTTSCCTTTHHHHHHHHHHHHHH
T ss_pred cCCeEEE-ECCCCHHHH-HhhcCCCEEEEEeccccCHHHHHHHHHcCCeEEEEeeeEcccCCccccCcchHHHHHHHHHH
Confidence 6898663 333443332 22234666666656666665678888999988754 5321 13344433 34454
Q ss_pred HHHHchhHHHHHHHcC--cccccccceeeecCCeEEEEecChhHHHHHHHHHcCCCEEEEECCCCCh-hHHHHcCCcc--
Q 006864 200 SMARNVSQADASIKAG--KWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPA-DKARAVGVEL-- 274 (628)
Q Consensus 200 ~~~R~i~~~~~~~~~g--~W~~~~~~g~~l~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~~g~~~-- 274 (628)
++. ++... ..| -+.. .. ..+.+++++|+|.|.+|+.+++.++.+|++|+++|++... +...+.+...
T Consensus 144 gA~-nt~~~----~~g~G~~l~-~l--~~l~~~~VlViGaGgvG~~aa~~a~~~Ga~V~v~dr~~~r~~~~~~~~~~~~~ 215 (361)
T 1pjc_A 144 GAR-FLERQ----QGGRGVLLG-GV--PGVKPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGSRVE 215 (361)
T ss_dssp HHH-HTSGG----GTSCCCCTT-CB--TTBCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGGSE
T ss_pred HHH-HHhhc----cCCCceecc-CC--CCCCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHhhCceeE
Confidence 432 22211 112 1111 01 2377899999999999999999999999999999987522 2333333221
Q ss_pred ------cCHHHHhccCCEEEEcCCCCc-cccccccHHHHhcCCCCcEEEEcC
Q 006864 275 ------VSFDQALATADFISLHMPLNP-TTSKIFNDETFAKMKKGVRIVNVA 319 (628)
Q Consensus 275 ------~sl~ell~~aDvV~l~~Plt~-~t~~li~~~~l~~mk~gailIN~a 319 (628)
.++.+.+..+|+|+.+++... .+..++.+..++.||++.+++|++
T Consensus 216 ~~~~~~~~~~~~~~~~DvVI~~~~~~~~~~~~li~~~~~~~~~~g~~ivdv~ 267 (361)
T 1pjc_A 216 LLYSNSAEIETAVAEADLLIGAVLVPGRRAPILVPASLVEQMRTGSVIVDVA 267 (361)
T ss_dssp EEECCHHHHHHHHHTCSEEEECCCCTTSSCCCCBCHHHHTTSCTTCEEEETT
T ss_pred eeeCCHHHHHHHHcCCCEEEECCCcCCCCCCeecCHHHHhhCCCCCEEEEEe
Confidence 245677789999999997543 234567888999999999999997
|
| >3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.71 E-value=6.7e-08 Score=106.07 Aligned_cols=169 Identities=14% Similarity=0.110 Sum_probs=107.9
Q ss_pred CCCChhhHHHHHHHHHHHHHHchhHHHHHHHcCcccccc----cceee-ecCCeEEEEecChhHHHHHHHHHcCCCEEEE
Q 006864 183 PIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSK----YVGVS-LVGKTLAVMGFGKVGSEVARRAKGLGMNVIA 257 (628)
Q Consensus 183 p~~~~~avAE~~l~l~L~~~R~i~~~~~~~~~g~W~~~~----~~g~~-l~GktiGIIGlG~IG~~vA~~l~~~G~~V~~ 257 (628)
.|-|-..|.|.+.+.+|. +....++|.... +.... ..=++|||||+|.||..+|..+...|++|++
T Consensus 12 ~~~~~~~~~~~~~~~~~~---------a~~~~~~w~~p~~~~~~~~~~~~~i~kVaVIGaG~MG~~IA~~la~aG~~V~l 82 (460)
T 3k6j_A 12 TGENLYFQGSEVRSYLME---------AHSLAGQWSLPNDRGDHTNSEAYDVNSVAIIGGGTMGKAMAICFGLAGIETFL 82 (460)
T ss_dssp TSGGGGGCBCHHHHHHHH---------TTCCTTSCBCSTTSCBTTSCCCCCCCEEEEECCSHHHHHHHHHHHHTTCEEEE
T ss_pred cccchhhhhHHHHHHHHh---------HHHhhccccCCCCccccccCCcccCCEEEEECCCHHHHHHHHHHHHCCCeEEE
Confidence 355566666777777765 233346686542 11111 1227899999999999999999999999999
Q ss_pred ECCCCCh---------hHHHHcCC-------------cc-cCHHHHhccCCEEEEcCCCCccccccccHHHHhcCCCCcE
Q 006864 258 HDPYAPA---------DKARAVGV-------------EL-VSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVR 314 (628)
Q Consensus 258 ~d~~~~~---------~~a~~~g~-------------~~-~sl~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gai 314 (628)
||+.... +...+.|. .. .+++ .+++||+|+.++|-..+.+.-+-++..+.++++++
T Consensus 83 ~D~~~e~a~~~i~~~l~~~~~~G~l~~~~~~~~~~~i~~t~dl~-al~~aDlVIeAVpe~~~vk~~v~~~l~~~~~~~aI 161 (460)
T 3k6j_A 83 VVRNEQRCKQELEVMYAREKSFKRLNDKRIEKINANLKITSDFH-KLSNCDLIVESVIEDMKLKKELFANLENICKSTCI 161 (460)
T ss_dssp ECSCHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHTTEEEESCGG-GCTTCSEEEECCCSCHHHHHHHHHHHHTTSCTTCE
T ss_pred EECcHHHHHHHHHHHHHHHHHcCCCCHHHHHHHhcceEEeCCHH-HHccCCEEEEcCCCCHHHHHHHHHHHHhhCCCCCE
Confidence 9987531 11122232 11 2564 68999999999997766655444566677999999
Q ss_pred EEEcCCCchhcHHHHHHHHhCCCeeEEEeeccCCCCCCCCCccccCCcEEEcCCCCCC
Q 006864 315 IVNVARGGVIDEEALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGAS 372 (628)
Q Consensus 315 lIN~aRg~~vde~aL~~aL~~g~i~ga~lDV~~~EP~~~~~~L~~~~nvilTPHig~~ 372 (628)
|++.+++ +....+.+.+... -...++..|. |.+ . .+-+.+.|+-..+
T Consensus 162 lasnTSs--l~i~~ia~~~~~p-~r~iG~Hffn--Pv~-~-----m~LvEIv~g~~Ts 208 (460)
T 3k6j_A 162 FGTNTSS--LDLNEISSVLRDP-SNLVGIHFFN--PAN-V-----IRLVEIIYGSHTS 208 (460)
T ss_dssp EEECCSS--SCHHHHHTTSSSG-GGEEEEECCS--STT-T-----CCEEEEECCSSCC
T ss_pred EEecCCC--hhHHHHHHhccCC-cceEEEEecc--hhh-h-----CCEEEEEeCCCCC
Confidence 9755444 3345666666542 2336667676 432 2 3345677764433
|
| >2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A* | Back alignment and structure |
|---|
Probab=98.70 E-value=3.4e-08 Score=109.04 Aligned_cols=117 Identities=11% Similarity=0.134 Sum_probs=89.6
Q ss_pred CeEEEEecChhHHHHHHHHHcCCCEEEEECCCCCh-hHHHHc----CCcc-cCHHHHhcc---CCEEEEcCCCCcccccc
Q 006864 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPA-DKARAV----GVEL-VSFDQALAT---ADFISLHMPLNPTTSKI 300 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~~----g~~~-~sl~ell~~---aDvV~l~~Plt~~t~~l 300 (628)
++|||||+|.||+.+|+.|...|++|.+||+.... +...+. |+.. .+++++++. +|+|++++|....+...
T Consensus 6 ~~IgvIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~gi~~~~s~~e~v~~l~~aDvVilavp~~~~v~~v 85 (474)
T 2iz1_A 6 ANFGVVGMAVMGKNLALNVESRGYTVAIYNRTTSKTEEVFKEHQDKNLVFTKTLEEFVGSLEKPRRIMLMVQAGAATDAT 85 (474)
T ss_dssp BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTTSCEEECSSHHHHHHTBCSSCEEEECCCTTHHHHHH
T ss_pred CcEEEEeeHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHHHhCcCCCeEEeCCHHHHHhhccCCCEEEEEccCchHHHHH
Confidence 58999999999999999999999999999987422 222222 5543 378898876 99999999976666766
Q ss_pred ccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhCCCeeEEEeeccC
Q 006864 301 FNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFT 347 (628)
Q Consensus 301 i~~~~l~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~ga~lDV~~ 347 (628)
+ ++....+++|.+||+++.|...+.+.+.+.+.+..+.....-|+.
T Consensus 86 l-~~l~~~l~~g~iiId~s~~~~~~~~~l~~~l~~~g~~~v~~pv~g 131 (474)
T 2iz1_A 86 I-KSLLPLLDIGDILIDGGNTHFPDTMRRNAELADSGINFIGTGVSG 131 (474)
T ss_dssp H-HHHGGGCCTTCEEEECSCCCHHHHHHHHHHTTTSSCEEEEEEECS
T ss_pred H-HHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHCCCeEECCCCCC
Confidence 6 455667899999999999988888888888876544333333443
|
| >2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A* | Back alignment and structure |
|---|
Probab=98.69 E-value=3.4e-08 Score=109.33 Aligned_cols=117 Identities=15% Similarity=0.156 Sum_probs=89.8
Q ss_pred CeEEEEecChhHHHHHHHHHcCCCEEEEECCCCCh-hHHHH-----cCCcc-cCHHHHhc---cCCEEEEcCCCCccccc
Q 006864 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPA-DKARA-----VGVEL-VSFDQALA---TADFISLHMPLNPTTSK 299 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~-----~g~~~-~sl~ell~---~aDvV~l~~Plt~~t~~ 299 (628)
++|||||+|.||+.+|..|...|++|.+||+.... +...+ .++.. .+++++++ ++|+|++++|....++.
T Consensus 3 m~IgvIG~G~mG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~g~gi~~~~~~~e~v~~l~~aDvVilaVp~~~~v~~ 82 (482)
T 2pgd_A 3 ADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTKVLGAHSLEEMVSKLKKPRRIILLVKAGQAVDN 82 (482)
T ss_dssp BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHHTTTTTSSCEECSSHHHHHHHBCSSCEEEECSCTTHHHHH
T ss_pred CeEEEEChHHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHhccccCCCeEEeCCHHHHHhhccCCCEEEEeCCChHHHHH
Confidence 47999999999999999999999999999987532 23333 45543 37888874 89999999997666777
Q ss_pred cccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhCCCeeEEEeeccC
Q 006864 300 IFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFT 347 (628)
Q Consensus 300 li~~~~l~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~ga~lDV~~ 347 (628)
++ ++....+++|.+||+++.|...+...+.+.+.+..+.....-|+.
T Consensus 83 vl-~~l~~~l~~g~iII~~s~~~~~~~~~l~~~l~~~g~~~v~~pv~g 129 (482)
T 2pgd_A 83 FI-EKLVPLLDIGDIIIDGGNSEYRDTMRRCRDLKDKGILFVGSGVSG 129 (482)
T ss_dssp HH-HHHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEEEEES
T ss_pred HH-HHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEeCCCCCC
Confidence 66 355667999999999999988888888888876444333334444
|
| >2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A | Back alignment and structure |
|---|
Probab=98.65 E-value=8.3e-08 Score=105.71 Aligned_cols=134 Identities=16% Similarity=0.179 Sum_probs=92.3
Q ss_pred CeEEEEecChhHHHHHHHHHcC--CCEEEEECCCCChhHH----------------HH----cCCcc-cCHHHHhccCCE
Q 006864 230 KTLAVMGFGKVGSEVARRAKGL--GMNVIAHDPYAPADKA----------------RA----VGVEL-VSFDQALATADF 286 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~--G~~V~~~d~~~~~~~a----------------~~----~g~~~-~sl~ell~~aDv 286 (628)
++|+|||+|.||..+|..|... |++|++||+....... .. .++.. .++++.+++||+
T Consensus 6 mkI~VIG~G~mG~~lA~~La~~g~G~~V~~~d~~~~~~~~l~~g~~~i~e~~l~~~~~~~~~~~~~~t~~~~e~~~~aDv 85 (467)
T 2q3e_A 6 KKICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVNESRINAWNSPTLPIYEPGLKEVVESCRGKNLFFSTNIDDAIKEADL 85 (467)
T ss_dssp CEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCHHHHHHHTSSSCSSCCTTHHHHHHHHBTTTEEEESCHHHHHHHCSE
T ss_pred cEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHhCCCCCcCCCCHHHHHHHhhcCCEEEECCHHHHHhcCCE
Confidence 5899999999999999999877 8999999986421111 00 13333 368889999999
Q ss_pred EEEcCCCCcccccc-----------c--cHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhCCCeeEEEee---ccCCCC
Q 006864 287 ISLHMPLNPTTSKI-----------F--NDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALD---VFTEEP 350 (628)
Q Consensus 287 V~l~~Plt~~t~~l-----------i--~~~~l~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~ga~lD---V~~~EP 350 (628)
|++|+|......+. . -+.....|++|+++|++++..+-..+.+.+.+++... .++| ++..|+
T Consensus 86 ViiaVptp~~~~~v~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~~g~~~~l~~~l~~~~~--~~~d~~V~~~Pe~ 163 (467)
T 2q3e_A 86 VFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNSNGYKIVTEKSTVPVRAAESIRRIFDANTK--PNLNLQVLSNPEF 163 (467)
T ss_dssp EEECCCCCBCCSSTTTTTSBCCHHHHHHHHHHHHTCCSEEEEEECSCCCTTHHHHHHHHHHHTCC--TTCEEEEEECCCC
T ss_pred EEEEcCCchhhccccccCCCcHHHHHHHHHHHHhhCCCCCEEEECCcCCchHHHHHHHHHHHhCC--CCCCeEEEeCHHH
Confidence 99999954433321 1 1234557899999999999888888888888876532 1223 355665
Q ss_pred CCCCC---ccccCCcEEE
Q 006864 351 PAKDS---KLVQHENVTV 365 (628)
Q Consensus 351 ~~~~~---~L~~~~nvil 365 (628)
..... .++..+++++
T Consensus 164 ~~~G~~~~d~~~~~rivv 181 (467)
T 2q3e_A 164 LAEGTAIKDLKNPDRVLI 181 (467)
T ss_dssp CCTTSHHHHHHSCSCEEE
T ss_pred hhcccchhhccCCCEEEE
Confidence 54333 2456667764
|
| >2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A* | Back alignment and structure |
|---|
Probab=98.65 E-value=3.3e-08 Score=97.57 Aligned_cols=94 Identities=14% Similarity=0.222 Sum_probs=71.6
Q ss_pred cCCeEEEEecChhHHHHHHHHHcCCCEEEEECCCCCh-hHHHHcCCcccCHHHHhccCCEEEEcCCCCccccccccHHHH
Q 006864 228 VGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPA-DKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETF 306 (628)
Q Consensus 228 ~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~~g~~~~sl~ell~~aDvV~l~~Plt~~t~~li~~~~l 306 (628)
.+++|+|||+|.||+.+|+.|...|++|.++|+.... +...+.|+...+++++++++|+|++++|. .....++. +
T Consensus 27 ~~~~I~iiG~G~~G~~la~~l~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~DvVi~av~~-~~~~~v~~---l 102 (215)
T 2vns_A 27 EAPKVGILGSGDFARSLATRLVGSGFKVVVGSRNPKRTARLFPSAAQVTFQEEAVSSPEVIFVAVFR-EHYSSLCS---L 102 (215)
T ss_dssp --CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSHHHHHHHSBTTSEEEEHHHHTTSCSEEEECSCG-GGSGGGGG---G
T ss_pred CCCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCceecHHHHHhCCCEEEECCCh-HHHHHHHH---H
Confidence 4579999999999999999999999999999987421 22222366556888999999999999994 44555553 4
Q ss_pred hcCCCCcEEEEcCCCchhc
Q 006864 307 AKMKKGVRIVNVARGGVID 325 (628)
Q Consensus 307 ~~mk~gailIN~aRg~~vd 325 (628)
+.+.+++++|++++|.-.+
T Consensus 103 ~~~~~~~~vv~~s~g~~~~ 121 (215)
T 2vns_A 103 SDQLAGKILVDVSNPTEQE 121 (215)
T ss_dssp HHHHTTCEEEECCCCCHHH
T ss_pred HHhcCCCEEEEeCCCcccc
Confidence 3334899999999987654
|
| >1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6 | Back alignment and structure |
|---|
Probab=98.63 E-value=7.3e-08 Score=106.53 Aligned_cols=117 Identities=13% Similarity=0.182 Sum_probs=88.9
Q ss_pred CeEEEEecChhHHHHHHHHHcCCCEEEEECCCCCh-hHHH-HcC-------Ccc-cCHHHHhcc---CCEEEEcCCCCcc
Q 006864 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPA-DKAR-AVG-------VEL-VSFDQALAT---ADFISLHMPLNPT 296 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~-~~g-------~~~-~sl~ell~~---aDvV~l~~Plt~~ 296 (628)
++|||||+|.||+.+|..|...|++|.+||+.... +... ..| +.. .+++++++. +|+|++++|....
T Consensus 2 MkIgVIG~G~mG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~g~~~~~~~i~~~~~~~e~v~~l~~aDvVilaVp~~~~ 81 (478)
T 1pgj_A 2 MDVGVVGLGVMGANLALNIAEKGFKVAVFNRTYSKSEEFMKANASAPFAGNLKAFETMEAFAASLKKPRKALILVQAGAA 81 (478)
T ss_dssp BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTTSTTGGGEEECSCHHHHHHHBCSSCEEEECCCCSHH
T ss_pred CEEEEEChHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcCCCCCCCCeEEECCHHHHHhcccCCCEEEEecCChHH
Confidence 47999999999999999999999999999987422 2222 224 332 378888874 9999999997666
Q ss_pred ccccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhCCCeeEEEeeccC
Q 006864 297 TSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFT 347 (628)
Q Consensus 297 t~~li~~~~l~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~ga~lDV~~ 347 (628)
++..+ ++....+++|.+||+++.|...+.+.+.+.+.+..+.....-|+.
T Consensus 82 v~~vl-~~l~~~l~~g~iIId~sng~~~~~~~l~~~l~~~g~~~v~~pv~g 131 (478)
T 1pgj_A 82 TDSTI-EQLKKVFEKGDILVDTGNAHFKDQGRRAQQLEAAGLRFLGMGISG 131 (478)
T ss_dssp HHHHH-HHHHHHCCTTCEEEECCCCCHHHHHHHHHHHHTTTCEEEEEEEES
T ss_pred HHHHH-HHHHhhCCCCCEEEECCCCChHHHHHHHHHHHHCCCeEEEeeccC
Confidence 66666 455667899999999999988888888888887544333334443
|
| >2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1} | Back alignment and structure |
|---|
Probab=98.59 E-value=6.4e-08 Score=95.19 Aligned_cols=81 Identities=15% Similarity=0.292 Sum_probs=62.4
Q ss_pred eeeecCCeEEEEecChhHHHHHHHHHcCCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEcCCCCccccccccH
Q 006864 224 GVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFND 303 (628)
Q Consensus 224 g~~l~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~sl~ell~~aDvV~l~~Plt~~t~~li~~ 303 (628)
..++.+++|+|||+|.||+.+|+.|...|++|.+||+... .+++||+|++++| .+.++.++.
T Consensus 14 ~~~~~~~~I~iiG~G~mG~~la~~l~~~g~~V~~~~~~~~----------------~~~~aD~vi~av~-~~~~~~v~~- 75 (209)
T 2raf_A 14 NLYFQGMEITIFGKGNMGQAIGHNFEIAGHEVTYYGSKDQ----------------ATTLGEIVIMAVP-YPALAALAK- 75 (209)
T ss_dssp ------CEEEEECCSHHHHHHHHHHHHTTCEEEEECTTCC----------------CSSCCSEEEECSC-HHHHHHHHH-
T ss_pred ccccCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHH----------------HhccCCEEEEcCC-cHHHHHHHH-
Confidence 3578899999999999999999999999999999998643 4578999999999 555665553
Q ss_pred HHHhcCCCCcEEEEcCCCch
Q 006864 304 ETFAKMKKGVRIVNVARGGV 323 (628)
Q Consensus 304 ~~l~~mk~gailIN~aRg~~ 323 (628)
+....++ ++++|++++|--
T Consensus 76 ~l~~~~~-~~~vi~~~~g~~ 94 (209)
T 2raf_A 76 QYATQLK-GKIVVDITNPLN 94 (209)
T ss_dssp HTHHHHT-TSEEEECCCCBC
T ss_pred HHHHhcC-CCEEEEECCCCC
Confidence 3344577 999999998654
|
| >3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.58 E-value=3.3e-08 Score=100.12 Aligned_cols=108 Identities=10% Similarity=0.147 Sum_probs=77.9
Q ss_pred ceeeecCCeEEEEecChhHHHHHHHHHcCCCE-EEEECCCCCh-hHH-HHcCCccc-CHHHHhccCCEEEEcCCCCcccc
Q 006864 223 VGVSLVGKTLAVMGFGKVGSEVARRAKGLGMN-VIAHDPYAPA-DKA-RAVGVELV-SFDQALATADFISLHMPLNPTTS 298 (628)
Q Consensus 223 ~g~~l~GktiGIIGlG~IG~~vA~~l~~~G~~-V~~~d~~~~~-~~a-~~~g~~~~-sl~ell~~aDvV~l~~Plt~~t~ 298 (628)
+..++.+++|||||+|.||+.+|+.|...|++ |.+||+.... +.. ...|+... ++++++++||+|++++|.. ...
T Consensus 4 m~~~~~~m~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Dvvi~av~~~-~~~ 82 (266)
T 3d1l_A 4 MKRSIEDTPIVLIGAGNLATNLAKALYRKGFRIVQVYSRTEESARELAQKVEAEYTTDLAEVNPYAKLYIVSLKDS-AFA 82 (266)
T ss_dssp ---CGGGCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSHHHHHHHHHHTTCEEESCGGGSCSCCSEEEECCCHH-HHH
T ss_pred hhcCCCCCeEEEEcCCHHHHHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHcCCceeCCHHHHhcCCCEEEEecCHH-HHH
Confidence 34456678999999999999999999988998 8999987422 222 23366543 7889999999999999944 334
Q ss_pred ccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHh
Q 006864 299 KIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALD 334 (628)
Q Consensus 299 ~li~~~~l~~mk~gailIN~aRg~~vde~aL~~aL~ 334 (628)
.++ ++....+++++++|+++.|...+. +.+.+.
T Consensus 83 ~v~-~~l~~~~~~~~ivv~~s~~~~~~~--l~~~~~ 115 (266)
T 3d1l_A 83 ELL-QGIVEGKREEALMVHTAGSIPMNV--WEGHVP 115 (266)
T ss_dssp HHH-HHHHTTCCTTCEEEECCTTSCGGG--STTTCS
T ss_pred HHH-HHHHhhcCCCcEEEECCCCCchHH--HHHHHH
Confidence 444 344456889999999998876543 444443
|
| >3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP} | Back alignment and structure |
|---|
Probab=98.56 E-value=4.2e-08 Score=100.65 Aligned_cols=91 Identities=22% Similarity=0.410 Sum_probs=72.2
Q ss_pred CeEEEEec-ChhHHHHHHHHHcCCCEEEEECCCCC-hhHHHHcCCcccCHHHHhccCCEEEEcCCCCccccccccHHHHh
Q 006864 230 KTLAVMGF-GKVGSEVARRAKGLGMNVIAHDPYAP-ADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFA 307 (628)
Q Consensus 230 ktiGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~g~~~~sl~ell~~aDvV~l~~Plt~~t~~li~~~~l~ 307 (628)
++|||||+ |.||+.+|+.|...|++|++||+... .+...+.|+...++.+++++||+|++++|... +..++ ++...
T Consensus 12 m~I~iIG~tG~mG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~aDvVi~av~~~~-~~~v~-~~l~~ 89 (286)
T 3c24_A 12 KTVAILGAGGKMGARITRKIHDSAHHLAAIEIAPEGRDRLQGMGIPLTDGDGWIDEADVVVLALPDNI-IEKVA-EDIVP 89 (286)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHSSSEEEEECCSHHHHHHHHHTTCCCCCSSGGGGTCSEEEECSCHHH-HHHHH-HHHGG
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHhcCCCcCCHHHHhcCCCEEEEcCCchH-HHHHH-HHHHH
Confidence 58999999 99999999999999999999998742 23334456655577889999999999999543 44444 34555
Q ss_pred cCCCCcEEEEcCCCc
Q 006864 308 KMKKGVRIVNVARGG 322 (628)
Q Consensus 308 ~mk~gailIN~aRg~ 322 (628)
.++++++||+++.|.
T Consensus 90 ~l~~~~ivv~~s~~~ 104 (286)
T 3c24_A 90 RVRPGTIVLILDAAA 104 (286)
T ss_dssp GSCTTCEEEESCSHH
T ss_pred hCCCCCEEEECCCCc
Confidence 689999999988765
|
| >3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579} | Back alignment and structure |
|---|
Probab=98.56 E-value=3.7e-07 Score=91.65 Aligned_cols=103 Identities=19% Similarity=0.297 Sum_probs=75.1
Q ss_pred CeEEEEecChhHHHHHHHHHcCCC----EEEEECCCCCh-hHH-HHcCCccc-CHHHHhccCCEEEEcCCCCcccccccc
Q 006864 230 KTLAVMGFGKVGSEVARRAKGLGM----NVIAHDPYAPA-DKA-RAVGVELV-SFDQALATADFISLHMPLNPTTSKIFN 302 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~G~----~V~~~d~~~~~-~~a-~~~g~~~~-sl~ell~~aDvV~l~~Plt~~t~~li~ 302 (628)
++|||||+|+||+.+|+.|...|+ +|.+||+.... +.. ...|+... ++++++++||+|++++|.. ....++
T Consensus 3 ~~i~iIG~G~mG~~~a~~l~~~g~~~~~~V~~~~r~~~~~~~~~~~~g~~~~~~~~e~~~~aDvVilav~~~-~~~~v~- 80 (247)
T 3gt0_A 3 KQIGFIGCGNMGMAMIGGMINKNIVSSNQIICSDLNTANLKNASEKYGLTTTTDNNEVAKNADILILSIKPD-LYASII- 80 (247)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTSSCGGGEEEECSCHHHHHHHHHHHCCEECSCHHHHHHHCSEEEECSCTT-THHHHC-
T ss_pred CeEEEECccHHHHHHHHHHHhCCCCCCCeEEEEeCCHHHHHHHHHHhCCEEeCChHHHHHhCCEEEEEeCHH-HHHHHH-
Confidence 689999999999999999999998 99999987522 222 34577654 8899999999999999732 334444
Q ss_pred HHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhCC
Q 006864 303 DETFAKMKKGVRIVNVARGGVIDEEALVRALDSG 336 (628)
Q Consensus 303 ~~~l~~mk~gailIN~aRg~~vde~aL~~aL~~g 336 (628)
++....++++.++|.+.-|- ..+.+.+.+..+
T Consensus 81 ~~l~~~l~~~~~vvs~~~gi--~~~~l~~~~~~~ 112 (247)
T 3gt0_A 81 NEIKEIIKNDAIIVTIAAGK--SIESTENAFNKK 112 (247)
T ss_dssp ---CCSSCTTCEEEECSCCS--CHHHHHHHHCSC
T ss_pred HHHHhhcCCCCEEEEecCCC--CHHHHHHHhCCC
Confidence 34445678999999776543 345666666543
|
| >3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium} | Back alignment and structure |
|---|
Probab=98.55 E-value=1.1e-07 Score=87.56 Aligned_cols=87 Identities=16% Similarity=0.197 Sum_probs=69.1
Q ss_pred CCeEEEEecChhHHHHHHHHHcCCCEEEEECCCCCh--hHHHHcCCc---ccCHHHHhccCCEEEEcCCCCccccccccH
Q 006864 229 GKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPA--DKARAVGVE---LVSFDQALATADFISLHMPLNPTTSKIFND 303 (628)
Q Consensus 229 GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~--~~a~~~g~~---~~sl~ell~~aDvV~l~~Plt~~t~~li~~ 303 (628)
|++++|||.|.||+.+++.|+.+|++|.++|+.... ..+...+.. ..+++++++++|+|+.++|.. ..++..
T Consensus 21 ~~~v~iiG~G~iG~~~a~~l~~~g~~v~v~~r~~~~~~~~a~~~~~~~~~~~~~~~~~~~~Divi~at~~~---~~~~~~ 97 (144)
T 3oj0_A 21 GNKILLVGNGMLASEIAPYFSYPQYKVTVAGRNIDHVRAFAEKYEYEYVLINDIDSLIKNNDVIITATSSK---TPIVEE 97 (144)
T ss_dssp CCEEEEECCSHHHHHHGGGCCTTTCEEEEEESCHHHHHHHHHHHTCEEEECSCHHHHHHTCSEEEECSCCS---SCSBCG
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHHHHhCCceEeecCHHHHhcCCCEEEEeCCCC---CcEeeH
Confidence 899999999999999999999999999999987532 224455553 237899999999999999965 334444
Q ss_pred HHHhcCCCCcEEEEcCCC
Q 006864 304 ETFAKMKKGVRIVNVARG 321 (628)
Q Consensus 304 ~~l~~mk~gailIN~aRg 321 (628)
+.+++|.+++|++..
T Consensus 98 ---~~l~~g~~vid~~~p 112 (144)
T 3oj0_A 98 ---RSLMPGKLFIDLGNP 112 (144)
T ss_dssp ---GGCCTTCEEEECCSS
T ss_pred ---HHcCCCCEEEEccCC
Confidence 457889999999864
|
| >3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A* | Back alignment and structure |
|---|
Probab=98.50 E-value=3.4e-07 Score=99.83 Aligned_cols=115 Identities=15% Similarity=0.113 Sum_probs=81.8
Q ss_pred cceeeecCCeEEEEecChhHHHHHHHHHcCCCEEEEECCCCCh-hHHHH------------------cCCcc-cCHHHHh
Q 006864 222 YVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPA-DKARA------------------VGVEL-VSFDQAL 281 (628)
Q Consensus 222 ~~g~~l~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~------------------~g~~~-~sl~ell 281 (628)
.++++..-++|+|||+|.+|..+|..|.. |++|++||+.... +...+ .++.. .++++.+
T Consensus 29 ~~~r~~~~mkIaVIGlG~mG~~lA~~La~-G~~V~~~D~~~~~v~~l~~g~~~i~e~~l~~ll~~~~~~l~~ttd~~ea~ 107 (432)
T 3pid_A 29 QMGRGSEFMKITISGTGYVGLSNGVLIAQ-NHEVVALDIVQAKVDMLNQKISPIVDKEIQEYLAEKPLNFRATTDKHDAY 107 (432)
T ss_dssp ------CCCEEEEECCSHHHHHHHHHHHT-TSEEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEESCHHHHH
T ss_pred ccccccCCCEEEEECcCHHHHHHHHHHHc-CCeEEEEecCHHHhhHHhccCCccccccHHHHHhhccCCeEEEcCHHHHH
Confidence 34666777899999999999999999988 9999999987422 11111 12333 3788999
Q ss_pred ccCCEEEEcCCCCccc-------ccccc--HHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhCCCe
Q 006864 282 ATADFISLHMPLNPTT-------SKIFN--DETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVV 338 (628)
Q Consensus 282 ~~aDvV~l~~Plt~~t-------~~li~--~~~l~~mk~gailIN~aRg~~vde~aL~~aL~~g~i 338 (628)
++||+|++++|...+. ..+.. +.... |++|+++|+.+.-.+-..+.+.+.+.+..+
T Consensus 108 ~~aDvViiaVPt~~~~~~~~~Dl~~V~~v~~~i~~-l~~g~iVV~~STv~pgtt~~l~~~l~~~~v 172 (432)
T 3pid_A 108 RNADYVIIATPTDYDPKTNYFNTSTVEAVIRDVTE-INPNAVMIIKSTIPVGFTRDIKERLGIDNV 172 (432)
T ss_dssp TTCSEEEECCCCEEETTTTEEECHHHHHHHHHHHH-HCTTSEEEECSCCCTTHHHHHHHHHTCCCE
T ss_pred hCCCEEEEeCCCccccccccccHHHHHHHHHHHHh-cCCCcEEEEeCCCChHHHHHHHHHHhhccE
Confidence 9999999999954321 12221 34455 999999999999888888888888877544
|
| >1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A* | Back alignment and structure |
|---|
Probab=98.49 E-value=6.9e-07 Score=92.37 Aligned_cols=130 Identities=15% Similarity=0.123 Sum_probs=84.2
Q ss_pred CeEEEEecChhHHHHHHHHHcCCCEEEEECCCCCh-hHH-----------HHcC------------------Cc-ccCHH
Q 006864 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPA-DKA-----------RAVG------------------VE-LVSFD 278 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a-----------~~~g------------------~~-~~sl~ 278 (628)
++|+|||+|.||..+|..|...|++|++||+.... +.+ .+.| +. ..+++
T Consensus 16 ~~I~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~ 95 (302)
T 1f0y_A 16 KHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATSTDAA 95 (302)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEEESCHH
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCccccchhhHHHHHhceEEecCHH
Confidence 68999999999999999999999999999987421 111 0112 12 23688
Q ss_pred HHhccCCEEEEcCCCCccccccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhCC-CeeEEEeeccCCCCCCCCCcc
Q 006864 279 QALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSG-VVAQAALDVFTEEPPAKDSKL 357 (628)
Q Consensus 279 ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~~vde~aL~~aL~~g-~i~ga~lDV~~~EP~~~~~~L 357 (628)
+.+++||+|++++|-..+.+.-+-++....++++++|+....|- ....+.+.+... ++ .+.+.+. |..
T Consensus 96 ~~~~~aD~Vi~avp~~~~~~~~v~~~l~~~~~~~~iv~s~ts~i--~~~~l~~~~~~~~~~--~g~h~~~--P~~----- 164 (302)
T 1f0y_A 96 SVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTSSL--QITSIANATTRQDRF--AGLHFFN--PVP----- 164 (302)
T ss_dssp HHTTSCSEEEECCCSCHHHHHHHHHHHTTTSCTTCEEEECCSSS--CHHHHHTTSSCGGGE--EEEEECS--STT-----
T ss_pred HhhcCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCCC--CHHHHHHhcCCcccE--EEEecCC--Ccc-----
Confidence 88999999999999665443333344445688999998655553 334566655432 34 4445444 321
Q ss_pred ccCCcEEEcCCCCC
Q 006864 358 VQHENVTVTPHLGA 371 (628)
Q Consensus 358 ~~~~nvilTPHig~ 371 (628)
..+.+.+.++...
T Consensus 165 -~~~~~~i~~g~~~ 177 (302)
T 1f0y_A 165 -VMKLVEVIKTPMT 177 (302)
T ss_dssp -TCCEEEEECCTTC
T ss_pred -cCceEEEeCCCCC
Confidence 2345556665443
|
| >2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A | Back alignment and structure |
|---|
Probab=98.42 E-value=7.7e-07 Score=89.59 Aligned_cols=101 Identities=13% Similarity=0.213 Sum_probs=75.8
Q ss_pred CeEEEEecChhHHHHHHHHHcCCCEEEEECCCCCh-hHH-HHcCCccc-CHHHHhccCCEEEEcCCCCccccccccHHHH
Q 006864 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPA-DKA-RAVGVELV-SFDQALATADFISLHMPLNPTTSKIFNDETF 306 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a-~~~g~~~~-sl~ell~~aDvV~l~~Plt~~t~~li~~~~l 306 (628)
++|||||+|.||+.+++.|...|.+|.+||+.... +.. ...|+... +++++++++|+|++++| .... .+.+
T Consensus 4 m~i~iiG~G~mG~~~a~~l~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~D~Vi~~v~-~~~~-----~~v~ 77 (259)
T 2ahr_A 4 MKIGIIGVGKMASAIIKGLKQTPHELIISGSSLERSKEIAEQLALPYAMSHQDLIDQVDLVILGIK-PQLF-----ETVL 77 (259)
T ss_dssp CEEEEECCSHHHHHHHHHHTTSSCEEEEECSSHHHHHHHHHHHTCCBCSSHHHHHHTCSEEEECSC-GGGH-----HHHH
T ss_pred cEEEEECCCHHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHHcCCEeeCCHHHHHhcCCEEEEEeC-cHhH-----HHHH
Confidence 58999999999999999999999999999987422 222 23476544 78999999999999999 3332 3445
Q ss_pred hcCCCCcEEEEcCCCchhcHHHHHHHHhCC-Ce
Q 006864 307 AKMKKGVRIVNVARGGVIDEEALVRALDSG-VV 338 (628)
Q Consensus 307 ~~mk~gailIN~aRg~~vde~aL~~aL~~g-~i 338 (628)
..+++|.++|++..|-- .+.+.+.+..+ ++
T Consensus 78 ~~l~~~~~vv~~~~~~~--~~~l~~~~~~~~~~ 108 (259)
T 2ahr_A 78 KPLHFKQPIISMAAGIS--LQRLATFVGQDLPL 108 (259)
T ss_dssp TTSCCCSCEEECCTTCC--HHHHHHHHCTTSCE
T ss_pred HHhccCCEEEEeCCCCC--HHHHHHhcCCCCCE
Confidence 55778999999976543 34567777654 44
|
| >2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A* | Back alignment and structure |
|---|
Probab=98.42 E-value=3.2e-07 Score=96.02 Aligned_cols=104 Identities=19% Similarity=0.295 Sum_probs=78.1
Q ss_pred cCCeEEEEecChhHHHHHHHHHcCC----CEEEEECCCCC---hhHHHHcCCccc-CHHHHhccCCEEEEcCCCCccccc
Q 006864 228 VGKTLAVMGFGKVGSEVARRAKGLG----MNVIAHDPYAP---ADKARAVGVELV-SFDQALATADFISLHMPLNPTTSK 299 (628)
Q Consensus 228 ~GktiGIIGlG~IG~~vA~~l~~~G----~~V~~~d~~~~---~~~a~~~g~~~~-sl~ell~~aDvV~l~~Plt~~t~~ 299 (628)
..++|||||+|.||..+|..|...| .+|.+||+... .+...+.|+... +..+++++||+|++++| ......
T Consensus 21 ~~mkI~iIG~G~mG~ala~~L~~~G~~~~~~V~v~~r~~~~~~~~~l~~~G~~~~~~~~e~~~~aDvVilav~-~~~~~~ 99 (322)
T 2izz_A 21 QSMSVGFIGAGQLAFALAKGFTAAGVLAAHKIMASSPDMDLATVSALRKMGVKLTPHNKETVQHSDVLFLAVK-PHIIPF 99 (322)
T ss_dssp -CCCEEEESCSHHHHHHHHHHHHTTSSCGGGEEEECSCTTSHHHHHHHHHTCEEESCHHHHHHHCSEEEECSC-GGGHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCCcceEEEECCCccHHHHHHHHHcCCEEeCChHHHhccCCEEEEEeC-HHHHHH
Confidence 3468999999999999999999888 79999998763 233445677655 78899999999999999 444444
Q ss_pred cccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhC
Q 006864 300 IFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDS 335 (628)
Q Consensus 300 li~~~~l~~mk~gailIN~aRg~~vde~aL~~aL~~ 335 (628)
++ .+....++++.+||+++-|-- .+.+.+.+.+
T Consensus 100 vl-~~l~~~l~~~~ivvs~s~gi~--~~~l~~~l~~ 132 (322)
T 2izz_A 100 IL-DEIGADIEDRHIVVSCAAGVT--ISSIEKKLSA 132 (322)
T ss_dssp HH-HHHGGGCCTTCEEEECCTTCC--HHHHHHHHHT
T ss_pred HH-HHHHhhcCCCCEEEEeCCCCC--HHHHHHHHhh
Confidence 44 344456889999999976543 3456666654
|
| >3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=98.40 E-value=9.8e-07 Score=90.64 Aligned_cols=109 Identities=14% Similarity=0.175 Sum_probs=79.7
Q ss_pred CCeEEEEecChhHHHHHHHHHcCCC---EEEEECCCCCh-hHHHH-cCCccc-CHHHHhccCCEEEEcCCCCcccccccc
Q 006864 229 GKTLAVMGFGKVGSEVARRAKGLGM---NVIAHDPYAPA-DKARA-VGVELV-SFDQALATADFISLHMPLNPTTSKIFN 302 (628)
Q Consensus 229 GktiGIIGlG~IG~~vA~~l~~~G~---~V~~~d~~~~~-~~a~~-~g~~~~-sl~ell~~aDvV~l~~Plt~~t~~li~ 302 (628)
.++|||||+|+||+.+|+.|...|+ +|.+||++... +...+ .|+... +..+++++||+|++++|- .....++
T Consensus 3 ~~~I~iIG~G~mG~aia~~l~~~g~~~~~V~v~dr~~~~~~~l~~~~gi~~~~~~~~~~~~aDvVilav~p-~~~~~vl- 80 (280)
T 3tri_A 3 TSNITFIGGGNMARNIVVGLIANGYDPNRICVTNRSLDKLDFFKEKCGVHTTQDNRQGALNADVVVLAVKP-HQIKMVC- 80 (280)
T ss_dssp CSCEEEESCSHHHHHHHHHHHHTTCCGGGEEEECSSSHHHHHHHHTTCCEEESCHHHHHSSCSEEEECSCG-GGHHHHH-
T ss_pred CCEEEEEcccHHHHHHHHHHHHCCCCCCeEEEEeCCHHHHHHHHHHcCCEEeCChHHHHhcCCeEEEEeCH-HHHHHHH-
Confidence 4789999999999999999999898 89999998632 22333 477655 789999999999999983 2333333
Q ss_pred HHHHhc-CCCCcEEEEcCCCchhcHHHHHHHHhCC-CeeEE
Q 006864 303 DETFAK-MKKGVRIVNVARGGVIDEEALVRALDSG-VVAQA 341 (628)
Q Consensus 303 ~~~l~~-mk~gailIN~aRg~~vde~aL~~aL~~g-~i~ga 341 (628)
++.-.. ++++.+||+++-|- ..+.|.+.+..+ ++.++
T Consensus 81 ~~l~~~~l~~~~iiiS~~agi--~~~~l~~~l~~~~~vvr~ 119 (280)
T 3tri_A 81 EELKDILSETKILVISLAVGV--TTPLIEKWLGKASRIVRA 119 (280)
T ss_dssp HHHHHHHHTTTCEEEECCTTC--CHHHHHHHHTCCSSEEEE
T ss_pred HHHHhhccCCCeEEEEecCCC--CHHHHHHHcCCCCeEEEE
Confidence 333334 68888999887554 346777788653 55444
|
| >1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A* | Back alignment and structure |
|---|
Probab=98.39 E-value=8.6e-07 Score=96.68 Aligned_cols=106 Identities=15% Similarity=0.183 Sum_probs=76.4
Q ss_pred CeEEEEecChhHHHHHHHHHcCCCEEEEECCCCCh-hHHHH-------------------cC-Ccc-cCHHHHhccCCEE
Q 006864 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPA-DKARA-------------------VG-VEL-VSFDQALATADFI 287 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~-------------------~g-~~~-~sl~ell~~aDvV 287 (628)
++|+|||+|.||..+|..|...|++|++||+.... +...+ .| +.. .++++++++||+|
T Consensus 1 mkI~VIG~G~vG~~~A~~la~~G~~V~~~d~~~~~~~~l~~~~~~i~e~~l~~~~~~~~~~g~l~~t~~~~~~~~~aDvv 80 (436)
T 1mv8_A 1 MRISIFGLGYVGAVCAGCLSARGHEVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQGRQTGRLSGTTDFKKAVLDSDVS 80 (436)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHHHHHTCSEE
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHhCCCCCcCCCCHHHHHHhhcccCceEEeCCHHHHhccCCEE
Confidence 47999999999999999999999999999986422 11111 22 222 3688889999999
Q ss_pred EEcCCCCcccccccc--------HHHHhcCCC---CcEEEEcCCCchhc-HHHHHHHHhC
Q 006864 288 SLHMPLNPTTSKIFN--------DETFAKMKK---GVRIVNVARGGVID-EEALVRALDS 335 (628)
Q Consensus 288 ~l~~Plt~~t~~li~--------~~~l~~mk~---gailIN~aRg~~vd-e~aL~~aL~~ 335 (628)
++|+|...+..+..+ ++....|++ +.++|+++...+-. .+.+.+.+++
T Consensus 81 iiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~~~~~~iVV~~Stv~~g~t~~~l~~~l~~ 140 (436)
T 1mv8_A 81 FICVGTPSKKNGDLDLGYIETVCREIGFAIREKSERHTVVVRSTVLPGTVNNVVIPLIED 140 (436)
T ss_dssp EECCCCCBCTTSSBCCHHHHHHHHHHHHHHTTCCSCCEEEECSCCCTTHHHHTHHHHHHH
T ss_pred EEEcCCCcccCCCcchHHHHHHHHHHHHHhcccCCCcEEEEeCCcCCCchHHHHHHHHHH
Confidence 999996554222221 334455888 99999998766655 6667777765
|
| >1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A* | Back alignment and structure |
|---|
Probab=98.34 E-value=3.3e-07 Score=92.36 Aligned_cols=101 Identities=18% Similarity=0.269 Sum_probs=72.8
Q ss_pred CeEEEEecChhHHHHHHHHHcCC-CEEEEECCCCCh-hHHH-HcCCccc-CHHHHhccCCEEEEcCCCCccccccccHHH
Q 006864 230 KTLAVMGFGKVGSEVARRAKGLG-MNVIAHDPYAPA-DKAR-AVGVELV-SFDQALATADFISLHMPLNPTTSKIFNDET 305 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~G-~~V~~~d~~~~~-~~a~-~~g~~~~-sl~ell~~aDvV~l~~Plt~~t~~li~~~~ 305 (628)
++|||||+|.||+.+|+.|...| .+|.+||+.... +... ..|+... ++++++ +||+|++++| ....+.++
T Consensus 1 m~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~~~~g~~~~~~~~~~~-~~D~vi~~v~-~~~~~~v~---- 74 (263)
T 1yqg_A 1 MNVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGAEKRERLEKELGVETSATLPELH-SDDVLILAVK-PQDMEAAC---- 74 (263)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCSCEEEEECSSHHHHHHHHHHTCCEEESSCCCCC-TTSEEEECSC-HHHHHHHH----
T ss_pred CEEEEECchHHHHHHHHHHHHCCCCeEEEECCCHHHHHHHHHhcCCEEeCCHHHHh-cCCEEEEEeC-chhHHHHH----
Confidence 47999999999999999999889 999999987422 2222 2476544 677788 9999999999 44443333
Q ss_pred HhcCC-CCcEEEEcCCCchhcHHHHHHHHhCC-Cee
Q 006864 306 FAKMK-KGVRIVNVARGGVIDEEALVRALDSG-VVA 339 (628)
Q Consensus 306 l~~mk-~gailIN~aRg~~vde~aL~~aL~~g-~i~ 339 (628)
..++ ++.++|+++.|--. +.+.+.+..+ ++.
T Consensus 75 -~~l~~~~~ivv~~~~g~~~--~~l~~~~~~~~~~v 107 (263)
T 1yqg_A 75 -KNIRTNGALVLSVAAGLSV--GTLSRYLGGTRRIV 107 (263)
T ss_dssp -TTCCCTTCEEEECCTTCCH--HHHHHHTTSCCCEE
T ss_pred -HHhccCCCEEEEecCCCCH--HHHHHHcCCCCcEE
Confidence 3332 28999999655433 6777777764 443
|
| >3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.32 E-value=1.6e-06 Score=96.00 Aligned_cols=130 Identities=23% Similarity=0.219 Sum_probs=86.3
Q ss_pred CCeEEEEecChhHHHHHHHHHcCCCEEEEECCCCCh-hHHHH-----------cCC-------------cc-cCHHHHhc
Q 006864 229 GKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPA-DKARA-----------VGV-------------EL-VSFDQALA 282 (628)
Q Consensus 229 GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~-----------~g~-------------~~-~sl~ell~ 282 (628)
-++|||||+|.||..+|..+...|++|++||+.... +.+.+ .|. .. .+++ .++
T Consensus 5 ~~kVgVIGaG~MG~~IA~~la~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~ 83 (483)
T 3mog_A 5 VQTVAVIGSGTMGAGIAEVAASHGHQVLLYDISAEALTRAIDGIHARLNSRVTRGKLTAETCERTLKRLIPVTDIH-ALA 83 (483)
T ss_dssp CCCEEEECCSHHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHTTTTTTSSCHHHHHHHHHTEEEECCGG-GGG
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceeEeCCHH-Hhc
Confidence 368999999999999999999999999999987522 22111 221 11 2454 689
Q ss_pred cCCEEEEcCCCCccccccccHHHHhcCCCCcEEE-EcCCCchhcHHHHHHHHhCCCeeEEEeeccCCCCCCCCCccccCC
Q 006864 283 TADFISLHMPLNPTTSKIFNDETFAKMKKGVRIV-NVARGGVIDEEALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHE 361 (628)
Q Consensus 283 ~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailI-N~aRg~~vde~aL~~aL~~g~i~ga~lDV~~~EP~~~~~~L~~~~ 361 (628)
+||+|+.++|-..+.+.-+-++..+.++++++|+ |++.-. ...+.+.+... -...++..|..-|. . +
T Consensus 84 ~aDlVIeAVpe~~~vk~~v~~~l~~~~~~~~IlasntSti~---i~~ia~~~~~p-~~~ig~hf~~Pa~v---~-----~ 151 (483)
T 3mog_A 84 AADLVIEAASERLEVKKALFAQLAEVCPPQTLLTTNTSSIS---ITAIAAEIKNP-ERVAGLHFFNPAPV---M-----K 151 (483)
T ss_dssp GCSEEEECCCCCHHHHHHHHHHHHHHSCTTCEEEECCSSSC---HHHHTTTSSSG-GGEEEEEECSSTTT---C-----C
T ss_pred CCCEEEEcCCCcHHHHHHHHHHHHHhhccCcEEEecCCCCC---HHHHHHHccCc-cceEEeeecChhhh---C-----C
Confidence 9999999999776555444455667799999994 666433 34556665432 22366676664432 1 4
Q ss_pred cEEEcCCCCC
Q 006864 362 NVTVTPHLGA 371 (628)
Q Consensus 362 nvilTPHig~ 371 (628)
-+.+.|+-..
T Consensus 152 Lvevv~g~~T 161 (483)
T 3mog_A 152 LVEVVSGLAT 161 (483)
T ss_dssp EEEEEECSSC
T ss_pred eEEEecCCCC
Confidence 4666666543
|
| >2i99_A MU-crystallin homolog; thyroid hormine binding protein, oxidoreductase; HET: NDP; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.31 E-value=7.5e-07 Score=92.98 Aligned_cols=90 Identities=21% Similarity=0.179 Sum_probs=69.3
Q ss_pred cCCeEEEEecChhHHHHHHHHHc-CCC-EEEEECCCCCh-h-HHHHcC--Ccc-cCHHHHhccCCEEEEcCCCCcccccc
Q 006864 228 VGKTLAVMGFGKVGSEVARRAKG-LGM-NVIAHDPYAPA-D-KARAVG--VEL-VSFDQALATADFISLHMPLNPTTSKI 300 (628)
Q Consensus 228 ~GktiGIIGlG~IG~~vA~~l~~-~G~-~V~~~d~~~~~-~-~a~~~g--~~~-~sl~ell~~aDvV~l~~Plt~~t~~l 300 (628)
.+++|||||+|.+|+.+++.+.. +|. +|.+||+.... + .....+ +.. .++++++++||+|++++|. +..+
T Consensus 134 ~~~~igiIG~G~~g~~~a~~l~~~~g~~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~e~v~~aDiVi~atp~---~~~v 210 (312)
T 2i99_A 134 SSEVLCILGAGVQAYSHYEIFTEQFSFKEVRIWNRTKENAEKFADTVQGEVRVCSSVQEAVAGADVIITVTLA---TEPI 210 (312)
T ss_dssp TCCEEEEECCSHHHHHHHHHHHHHCCCSEEEEECSSHHHHHHHHHHSSSCCEECSSHHHHHTTCSEEEECCCC---SSCC
T ss_pred CCcEEEEECCcHHHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHhhCCeEEeCCHHHHHhcCCEEEEEeCC---CCcc
Confidence 46799999999999999999865 487 89999987522 2 223335 443 3799999999999999994 3556
Q ss_pred ccHHHHhcCCCCcEEEEcCCCch
Q 006864 301 FNDETFAKMKKGVRIVNVARGGV 323 (628)
Q Consensus 301 i~~~~l~~mk~gailIN~aRg~~ 323 (628)
+.. +.+++|.+|++++....
T Consensus 211 ~~~---~~l~~g~~vi~~g~~~p 230 (312)
T 2i99_A 211 LFG---EWVKPGAHINAVGASRP 230 (312)
T ss_dssp BCG---GGSCTTCEEEECCCCST
T ss_pred cCH---HHcCCCcEEEeCCCCCC
Confidence 654 56899999999976554
|
| >3dfu_A Uncharacterized protein from 6-phosphogluconate dehydrogenase-like family; putative rossmann-like dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=98.29 E-value=1e-06 Score=88.27 Aligned_cols=133 Identities=13% Similarity=0.169 Sum_probs=84.8
Q ss_pred CCeEEEEecChhHHHHHHHHHcCCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEcCCCCccccccccHHHHhc
Q 006864 229 GKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAK 308 (628)
Q Consensus 229 GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~sl~ell~~aDvV~l~~Plt~~t~~li~~~~l~~ 308 (628)
-++|||||+|+||.++|+.|+..|++|.+||+. ++ +++|| ++++|.. ....++ .+....
T Consensus 6 ~mkI~IIG~G~~G~sLA~~L~~~G~~V~~~~~~----------------~~-~~~aD--ilavP~~-ai~~vl-~~l~~~ 64 (232)
T 3dfu_A 6 RLRVGIFDDGSSTVNMAEKLDSVGHYVTVLHAP----------------ED-IRDFE--LVVIDAH-GVEGYV-EKLSAF 64 (232)
T ss_dssp CCEEEEECCSCCCSCHHHHHHHTTCEEEECSSG----------------GG-GGGCS--EEEECSS-CHHHHH-HHHHTT
T ss_pred CcEEEEEeeCHHHHHHHHHHHHCCCEEEEecCH----------------HH-hccCC--EEEEcHH-HHHHHH-HHHHHh
Confidence 368999999999999999999999999999972 12 57899 8899965 455554 445556
Q ss_pred CCCCcEEEEcC-CCchhcHHHHHHHHhCCCeeEEEeeccCCCCCCCCCccccCCcEEEcCCCCCCcHHHHHHHHHHHHHH
Q 006864 309 MKKGVRIVNVA-RGGVIDEEALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKEAQEGVAIEIAEA 387 (628)
Q Consensus 309 mk~gailIN~a-Rg~~vde~aL~~aL~~g~i~ga~lDV~~~EP~~~~~~L~~~~nvilTPHig~~T~ea~~~~~~~~~~~ 387 (628)
+++|+++++|+ .-+.-..+ .+...|.. ..+ .||++..+.++.++ ..+ +...++.
T Consensus 65 l~~g~ivvd~sgs~~~~vl~---~~~~~g~~-fvg-----------~HPm~g~~~~i~a~-----d~~-----a~~~l~~ 119 (232)
T 3dfu_A 65 ARRGQMFLHTSLTHGITVMD---PLETSGGI-VMS-----------AHPIGQDRWVASAL-----DEL-----GETIVGL 119 (232)
T ss_dssp CCTTCEEEECCSSCCGGGGH---HHHHTTCE-EEE-----------EEEEETTEEEEEES-----SHH-----HHHHHHH
T ss_pred cCCCCEEEEECCcCHHHHHH---HHHhCCCc-EEE-----------eeeCCCCceeeeCC-----CHH-----HHHHHHH
Confidence 89999999974 32221111 22233321 111 24566666666655 222 2445566
Q ss_pred HHHHHcCCCCCCcccCCCCCccccccc
Q 006864 388 VVGALRGELSATAINAPMVPSEVLSEL 414 (628)
Q Consensus 388 i~~~l~g~~~~~~vn~p~~~~~~~~~~ 414 (628)
+...+.++.. .++++.++..
T Consensus 120 L~~~lG~~vv-------~~~~~~hd~~ 139 (232)
T 3dfu_A 120 LVGELGGSIV-------EIADDKRAQL 139 (232)
T ss_dssp HHHHTTCEEC-------CCCGGGHHHH
T ss_pred HHHHhCCEEE-------EeCHHHHhHH
Confidence 6666655544 4556665544
|
| >3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=98.29 E-value=6e-06 Score=84.88 Aligned_cols=81 Identities=21% Similarity=0.285 Sum_probs=68.4
Q ss_pred ceeeecCCeEEEEecCh-hHHHHHHHHHcCCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEcCCCCccccccc
Q 006864 223 VGVSLVGKTLAVMGFGK-VGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIF 301 (628)
Q Consensus 223 ~g~~l~GktiGIIGlG~-IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~sl~ell~~aDvV~l~~Plt~~t~~li 301 (628)
.+.+++||++.|||.|. +|+.+|..|.+.|+.|...+++. .+|++.+++||+|+.+++. .+++
T Consensus 154 ~~i~l~Gk~vvVvGrs~iVG~p~A~lL~~~gAtVtv~h~~t------------~~L~~~~~~ADIVI~Avg~----p~~I 217 (285)
T 3p2o_A 154 YEIDLEGKDAVIIGASNIVGRPMATMLLNAGATVSVCHIKT------------KDLSLYTRQADLIIVAAGC----VNLL 217 (285)
T ss_dssp TTCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC------------SCHHHHHTTCSEEEECSSC----TTCB
T ss_pred hCCCCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCc------------hhHHHHhhcCCEEEECCCC----CCcC
Confidence 35789999999999998 69999999999999999998642 2688999999999999983 3456
Q ss_pred cHHHHhcCCCCcEEEEcCCCc
Q 006864 302 NDETFAKMKKGVRIVNVARGG 322 (628)
Q Consensus 302 ~~~~l~~mk~gailIN~aRg~ 322 (628)
..+. +|+|+++||++.-.
T Consensus 218 ~~~~---vk~GavVIDVgi~~ 235 (285)
T 3p2o_A 218 RSDM---VKEGVIVVDVGINR 235 (285)
T ss_dssp CGGG---SCTTEEEEECCCEE
T ss_pred CHHH---cCCCeEEEEeccCc
Confidence 6644 59999999999655
|
| >4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea} | Back alignment and structure |
|---|
Probab=98.25 E-value=3.4e-06 Score=92.40 Aligned_cols=105 Identities=16% Similarity=0.146 Sum_probs=76.9
Q ss_pred CeEEEEecChhHHHHHHHHHcCCCEEEEECCCCChhHHHHcC---------------------Ccc-cCHHHHhccCCEE
Q 006864 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVG---------------------VEL-VSFDQALATADFI 287 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g---------------------~~~-~sl~ell~~aDvV 287 (628)
-+|+|||+|.+|..+|..|...|++|++||+....-.....+ +.. .++.+.+++||+|
T Consensus 9 ~~~~vIGlG~vG~~~A~~La~~G~~V~~~D~~~~kv~~l~~g~~~~~epgl~~~~~~~~~~g~l~~ttd~~ea~~~aDvv 88 (446)
T 4a7p_A 9 VRIAMIGTGYVGLVSGACFSDFGHEVVCVDKDARKIELLHQNVMPIYEPGLDALVASNVKAGRLSFTTDLAEGVKDADAV 88 (446)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHTTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHHHHTTCSEE
T ss_pred eEEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHhcCCCCccCCCHHHHHHhhcccCCEEEECCHHHHHhcCCEE
Confidence 479999999999999999999999999999875322111111 223 3788999999999
Q ss_pred EEcCCCCcc----------ccccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhC
Q 006864 288 SLHMPLNPT----------TSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDS 335 (628)
Q Consensus 288 ~l~~Plt~~----------t~~li~~~~l~~mk~gailIN~aRg~~vde~aL~~aL~~ 335 (628)
++|+|...+ .+..+ +.....|++|.++|+++.-.+-..+.+.+.+.+
T Consensus 89 ii~Vptp~~~~~~~~Dl~~v~~v~-~~i~~~l~~g~iVV~~STv~pgtt~~l~~~l~e 145 (446)
T 4a7p_A 89 FIAVGTPSRRGDGHADLSYVFAAA-REIAENLTKPSVIVTKSTVPVGTGDEVERIIAE 145 (446)
T ss_dssp EECCCCCBCTTTCCBCTHHHHHHH-HHHHHSCCSCCEEEECSCCCTTHHHHHHHHHHH
T ss_pred EEEcCCCCccccCCccHHHHHHHH-HHHHHhcCCCCEEEEeCCCCchHHHHHHHHHHH
Confidence 999985432 11121 455678999999999986665556666666654
|
| >2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=98.23 E-value=1.6e-06 Score=87.15 Aligned_cols=98 Identities=16% Similarity=0.264 Sum_probs=69.3
Q ss_pred CCeEEEEecChhHHHHHHHHHcCC----CEEEEECCCCChhHHHHcCCccc-CHHHHhccCCEEEEcCCCCccccccccH
Q 006864 229 GKTLAVMGFGKVGSEVARRAKGLG----MNVIAHDPYAPADKARAVGVELV-SFDQALATADFISLHMPLNPTTSKIFND 303 (628)
Q Consensus 229 GktiGIIGlG~IG~~vA~~l~~~G----~~V~~~d~~~~~~~a~~~g~~~~-sl~ell~~aDvV~l~~Plt~~t~~li~~ 303 (628)
.++|||||+|.||+.+|+.|...| .+|.+||+.... .|+... ++++++++||+|++++| ....+.++.
T Consensus 4 ~m~i~iiG~G~mG~~~a~~l~~~g~~~~~~v~~~~~~~~~-----~g~~~~~~~~~~~~~~D~vi~~v~-~~~~~~v~~- 76 (262)
T 2rcy_A 4 NIKLGFMGLGQMGSALAHGIANANIIKKENLFYYGPSKKN-----TTLNYMSSNEELARHCDIIVCAVK-PDIAGSVLN- 76 (262)
T ss_dssp SSCEEEECCSHHHHHHHHHHHHHTSSCGGGEEEECSSCCS-----SSSEECSCHHHHHHHCSEEEECSC-TTTHHHHHH-
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCCCCCeEEEEeCCccc-----CceEEeCCHHHHHhcCCEEEEEeC-HHHHHHHHH-
Confidence 468999999999999999998888 689999987543 466554 78899999999999999 444444442
Q ss_pred HHHhcCCCCcEEEEcCCCchhcHHHHHHHHhCC
Q 006864 304 ETFAKMKKGVRIVNVARGGVIDEEALVRALDSG 336 (628)
Q Consensus 304 ~~l~~mk~gailIN~aRg~~vde~aL~~aL~~g 336 (628)
+....++ +..+|.+..| ++.+.+.+.+..+
T Consensus 77 ~l~~~l~-~~~vv~~~~g--i~~~~l~~~~~~~ 106 (262)
T 2rcy_A 77 NIKPYLS-SKLLISICGG--LNIGKLEEMVGSE 106 (262)
T ss_dssp HSGGGCT-TCEEEECCSS--CCHHHHHHHHCTT
T ss_pred HHHHhcC-CCEEEEECCC--CCHHHHHHHhCCC
Confidence 3334454 4445554433 2334666666654
|
| >1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.23 E-value=4.1e-06 Score=92.13 Aligned_cols=131 Identities=20% Similarity=0.242 Sum_probs=84.6
Q ss_pred CCeEEEEecChhHHHHHHHHHcCCCEEEEECCCCCh-hHHHH-----------cC-----------Cc-ccCHHHHhccC
Q 006864 229 GKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPA-DKARA-----------VG-----------VE-LVSFDQALATA 284 (628)
Q Consensus 229 GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~-----------~g-----------~~-~~sl~ell~~a 284 (628)
=++|||||+|.||..+|..+...|++|++||+.... +.+.+ .| .. ..++ +.+++|
T Consensus 37 ~~kV~VIGaG~MG~~iA~~la~~G~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~-~~~~~a 115 (463)
T 1zcj_A 37 VSSVGVLGLGTMGRGIAISFARVGISVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRFSSST-KELSTV 115 (463)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCEEEESCG-GGGTTC
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhhcCCH-HHHCCC
Confidence 368999999999999999999999999999987421 11111 11 01 1255 568899
Q ss_pred CEEEEcCCCCccccccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhC-CCeeEEEeeccCCCCCCCCCccccCCcE
Q 006864 285 DFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDS-GVVAQAALDVFTEEPPAKDSKLVQHENV 363 (628)
Q Consensus 285 DvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~~vde~aL~~aL~~-g~i~ga~lDV~~~EP~~~~~~L~~~~nv 363 (628)
|+|+.++|-..+.+.-+-++....++++++|+....+- ....+.+.++. .++ .+.+.|. |.+ ..+.+
T Consensus 116 DlVIeaVpe~~~~k~~v~~~l~~~~~~~~ii~snTs~~--~~~~la~~~~~~~~~--ig~hf~~--P~~------~~~lv 183 (463)
T 1zcj_A 116 DLVVEAVFEDMNLKKKVFAELSALCKPGAFLCTNTSAL--NVDDIASSTDRPQLV--IGTHFFS--PAH------VMRLL 183 (463)
T ss_dssp SEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSSS--CHHHHHTTSSCGGGE--EEEEECS--STT------TCCEE
T ss_pred CEEEEcCCCCHHHHHHHHHHHHhhCCCCeEEEeCCCCc--CHHHHHHHhcCCcce--EEeecCC--Ccc------cceeE
Confidence 99999999654333333344556689999999744333 33466666643 244 5556663 321 23456
Q ss_pred EEcCCCCCC
Q 006864 364 TVTPHLGAS 372 (628)
Q Consensus 364 ilTPHig~~ 372 (628)
.+.++..++
T Consensus 184 evv~g~~t~ 192 (463)
T 1zcj_A 184 EVIPSRYSS 192 (463)
T ss_dssp EEEECSSCC
T ss_pred EEeCCCCCC
Confidence 666666554
|
| >3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=98.22 E-value=2.9e-06 Score=93.10 Aligned_cols=105 Identities=22% Similarity=0.223 Sum_probs=75.5
Q ss_pred CeEEEEecChhHHHHHHHHHcCCCEEEEECCCCCh-hHHHH-------------------cC-Ccc-cCHHHHhccCCEE
Q 006864 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPA-DKARA-------------------VG-VEL-VSFDQALATADFI 287 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~-------------------~g-~~~-~sl~ell~~aDvV 287 (628)
++|+|||+|.+|..+|..|...|++|++||+.... +...+ .+ +.. .++++++++||+|
T Consensus 3 mkI~VIG~G~vG~~lA~~La~~G~~V~~~D~~~~~v~~l~~g~~~i~e~gl~~~l~~~~~~~~l~~t~d~~ea~~~aDvV 82 (450)
T 3gg2_A 3 LDIAVVGIGYVGLVSATCFAELGANVRCIDTDRNKIEQLNSGTIPIYEPGLEKMIARNVKAGRLRFGTEIEQAVPEADII 82 (450)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTCSCCCSTTHHHHHHHHHHTTSEEEESCHHHHGGGCSEE
T ss_pred CEEEEECcCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHcCCCcccCCCHHHHHHhhcccCcEEEECCHHHHHhcCCEE
Confidence 58999999999999999999999999999987422 11111 11 222 3788899999999
Q ss_pred EEcCCCCcc---------ccccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhC
Q 006864 288 SLHMPLNPT---------TSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDS 335 (628)
Q Consensus 288 ~l~~Plt~~---------t~~li~~~~l~~mk~gailIN~aRg~~vde~aL~~aL~~ 335 (628)
++|+|...+ .+..+ +.....++++.++|+++.-.+-..+.+.+.+.+
T Consensus 83 iiaVptp~~~~~~~dl~~v~~v~-~~i~~~l~~g~iVV~~STv~pgt~~~l~~~l~~ 138 (450)
T 3gg2_A 83 FIAVGTPAGEDGSADMSYVLDAA-RSIGRAMSRYILIVTKSTVPVGSYRLIRKAIQE 138 (450)
T ss_dssp EECCCCCBCTTSSBCCHHHHHHH-HHHHHHCCSCEEEEECSCCCTTHHHHHHHHHHH
T ss_pred EEEcCCCcccCCCcChHHHHHHH-HHHHhhCCCCCEEEEeeeCCCcchHHHHHHHHH
Confidence 999995532 22222 445567899999999996555455556665544
|
| >1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A* | Back alignment and structure |
|---|
Probab=98.20 E-value=1.2e-06 Score=85.21 Aligned_cols=114 Identities=16% Similarity=0.213 Sum_probs=79.2
Q ss_pred CeEEEEe-cChhHHHHHHHHHcCCCEEEEECCCCCh-hHH-HHcC-------CcccCHHHHhccCCEEEEcCCCCccccc
Q 006864 230 KTLAVMG-FGKVGSEVARRAKGLGMNVIAHDPYAPA-DKA-RAVG-------VELVSFDQALATADFISLHMPLNPTTSK 299 (628)
Q Consensus 230 ktiGIIG-lG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a-~~~g-------~~~~sl~ell~~aDvV~l~~Plt~~t~~ 299 (628)
++|+|+| .|.||+.+++.|...|++|.++|+.... +.. ...+ +...+++++++++|+|++++|. ..++.
T Consensus 1 m~i~iiGa~G~~G~~ia~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~Vi~~~~~-~~~~~ 79 (212)
T 1jay_A 1 MRVALLGGTGNLGKGLALRLATLGHEIVVGSRREEKAEAKAAEYRRIAGDASITGMKNEDAAEACDIAVLTIPW-EHAID 79 (212)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSHHHHHHHHHHHHHHHSSCCEEEEEHHHHHHHCSEEEECSCH-HHHHH
T ss_pred CeEEEEcCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccccccCCCChhhHHHHHhcCCEEEEeCCh-hhHHH
Confidence 4799999 9999999999999999999999986422 111 1112 3334788899999999999993 33443
Q ss_pred cccHHHHhcCCCCcEEEEcCCCchhc------------HHHHHHHHhCCCeeEEEeeccCCCC
Q 006864 300 IFNDETFAKMKKGVRIVNVARGGVID------------EEALVRALDSGVVAQAALDVFTEEP 350 (628)
Q Consensus 300 li~~~~l~~mk~gailIN~aRg~~vd------------e~aL~~aL~~g~i~ga~lDV~~~EP 350 (628)
++. +....++ +.++|+++.|--.+ .+.+.+.+...++ ++.+.+.|
T Consensus 80 ~~~-~l~~~~~-~~~vi~~~~g~~~~~~~~~~~~g~~~~~~l~~~~~~~~~----v~~~~~~~ 136 (212)
T 1jay_A 80 TAR-DLKNILR-EKIVVSPLVPVSRGAKGFTYSSERSAAEIVAEVLESEKV----VSALHTIP 136 (212)
T ss_dssp HHH-HTHHHHT-TSEEEECCCCEECCTTCCEECCSSCHHHHHHHHHTCSCE----EECCTTCC
T ss_pred HHH-HHHHHcC-CCEEEEcCCCcCcCCceeecCCCCcHHHHHHHhCCCCeE----EEEccchH
Confidence 332 2333454 89999999865432 5677777764343 46666655
|
| >1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6 | Back alignment and structure |
|---|
Probab=98.19 E-value=3.6e-06 Score=88.30 Aligned_cols=103 Identities=22% Similarity=0.227 Sum_probs=72.7
Q ss_pred CeEEEEecChhHHHHHHHHHcCCCEEEEECCCCC-hhHHHHc-CC--------------c-ccCHHHHhccCCEEEEcCC
Q 006864 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAP-ADKARAV-GV--------------E-LVSFDQALATADFISLHMP 292 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~-g~--------------~-~~sl~ell~~aDvV~l~~P 292 (628)
++|+|||+|.||..+|..|...|++|.+||++.. .+...+. +. . ..+++++++.+|+|++++|
T Consensus 5 mki~iiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~v~ 84 (359)
T 1bg6_A 5 KTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKDADVILIVVP 84 (359)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHTTCSEEEECSC
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHhcCCeEEeccccccccccceecCCHHHHHhcCCEEEEeCC
Confidence 6899999999999999999999999999998742 2222222 21 1 2378888999999999999
Q ss_pred CCccccccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhC
Q 006864 293 LNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDS 335 (628)
Q Consensus 293 lt~~t~~li~~~~l~~mk~gailIN~aRg~~vde~aL~~aL~~ 335 (628)
... +..++ +.....+++++++|++ -|.......+.+.+..
T Consensus 85 ~~~-~~~~~-~~l~~~l~~~~~vv~~-~~~~~~~~~~~~~l~~ 124 (359)
T 1bg6_A 85 AIH-HASIA-ANIASYISEGQLIILN-PGATGGALEFRKILRE 124 (359)
T ss_dssp GGG-HHHHH-HHHGGGCCTTCEEEES-SCCSSHHHHHHHHHHH
T ss_pred chH-HHHHH-HHHHHhCCCCCEEEEc-CCCchHHHHHHHHHHh
Confidence 554 34443 4455668999999999 4412233334555543
|
| >2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=98.13 E-value=2.2e-06 Score=87.95 Aligned_cols=107 Identities=16% Similarity=0.207 Sum_probs=74.5
Q ss_pred CeEEEEecChhHHHHHHHHHcCCCEEEEECCCCC-hhHHHHcCCcc-------------cCHHHHhc---cCCEEEEcCC
Q 006864 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAP-ADKARAVGVEL-------------VSFDQALA---TADFISLHMP 292 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~g~~~-------------~sl~ell~---~aDvV~l~~P 292 (628)
++|+|||+|.||+.+|..|...|.+|.+||+... .+...+.|... .+.+++.+ ++|+|++++|
T Consensus 4 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~v~ 83 (316)
T 2ew2_A 4 MKIAIAGAGAMGSRLGIMLHQGGNDVTLIDQWPAHIEAIRKNGLIADFNGEEVVANLPIFSPEEIDHQNEQVDLIIALTK 83 (316)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHCEEEEETTEEEEECCCEECGGGCCTTSCCCSEEEECSC
T ss_pred CeEEEECcCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhCCEEEEeCCCeeEecceeecchhhcccCCCCCEEEEEec
Confidence 5899999999999999999999999999998642 22233334321 23445544 8999999999
Q ss_pred CCccccccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhCCCee
Q 006864 293 LNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVA 339 (628)
Q Consensus 293 lt~~t~~li~~~~l~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~ 339 (628)
- ..+..++ ++....++++.++|++..| +-..+.+.+.+...++.
T Consensus 84 ~-~~~~~v~-~~l~~~l~~~~~iv~~~~g-~~~~~~l~~~~~~~~vi 127 (316)
T 2ew2_A 84 A-QQLDAMF-KAIQPMITEKTYVLCLLNG-LGHEDVLEKYVPKENIL 127 (316)
T ss_dssp H-HHHHHHH-HHHGGGCCTTCEEEECCSS-SCTHHHHTTTSCGGGEE
T ss_pred c-ccHHHHH-HHHHHhcCCCCEEEEecCC-CCcHHHHHHHcCCccEE
Confidence 3 3444443 3344568899999999764 33456666667655554
|
| >4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=98.11 E-value=4.1e-06 Score=82.72 Aligned_cols=108 Identities=18% Similarity=0.249 Sum_probs=73.2
Q ss_pred CCeEEEEecChhHHHHHHHHHcCCCEEEE-ECCCCCh-h-HHHHcCCcc-cCHHHHhccCCEEEEcCCCCccccccccHH
Q 006864 229 GKTLAVMGFGKVGSEVARRAKGLGMNVIA-HDPYAPA-D-KARAVGVEL-VSFDQALATADFISLHMPLNPTTSKIFNDE 304 (628)
Q Consensus 229 GktiGIIGlG~IG~~vA~~l~~~G~~V~~-~d~~~~~-~-~a~~~g~~~-~sl~ell~~aDvV~l~~Plt~~t~~li~~~ 304 (628)
-++|||||+|.||+.+|+.|...|++|.+ ||+.... + .+...|+.. .+..+.++++|+|++++|.. ....++.
T Consensus 23 mmkI~IIG~G~mG~~la~~l~~~g~~V~~v~~r~~~~~~~l~~~~g~~~~~~~~~~~~~aDvVilavp~~-~~~~v~~-- 99 (220)
T 4huj_A 23 MTTYAIIGAGAIGSALAERFTAAQIPAIIANSRGPASLSSVTDRFGASVKAVELKDALQADVVILAVPYD-SIADIVT-- 99 (220)
T ss_dssp SCCEEEEECHHHHHHHHHHHHHTTCCEEEECTTCGGGGHHHHHHHTTTEEECCHHHHTTSSEEEEESCGG-GHHHHHT--
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCCHHHHHHHHHHhCCCcccChHHHHhcCCEEEEeCChH-HHHHHHH--
Confidence 36899999999999999999999999999 9987532 2 233456543 35556689999999999932 2222221
Q ss_pred HHhcCCCCcEEEEcCCCch------------hcHHHHHHHHhCCCeeE
Q 006864 305 TFAKMKKGVRIVNVARGGV------------IDEEALVRALDSGVVAQ 340 (628)
Q Consensus 305 ~l~~mk~gailIN~aRg~~------------vde~aL~~aL~~g~i~g 340 (628)
.+.. .++.++|+++-|-- ...+.+.+.+...++..
T Consensus 100 ~l~~-~~~~ivi~~~~g~~~~~~~~~~~~~~~~~~~l~~~l~~~~vv~ 146 (220)
T 4huj_A 100 QVSD-WGGQIVVDASNAIDFPAFKPRDLGGRLSTEIVSELVPGAKVVK 146 (220)
T ss_dssp TCSC-CTTCEEEECCCCBCTTTCCBCCCTTCCHHHHHHHHSTTCEEEE
T ss_pred Hhhc-cCCCEEEEcCCCCCcccccccccCCCcHHHHHHHHCCCCCEEE
Confidence 1122 35889999985431 14566777776545543
|
| >1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A* | Back alignment and structure |
|---|
Probab=98.09 E-value=7.9e-06 Score=88.20 Aligned_cols=106 Identities=14% Similarity=0.130 Sum_probs=76.4
Q ss_pred CeEEEEecChhHHHHHHHHHcCCCEEEEECCCCCh-hHHHHcCC------------------cc-cCHHHHhccCCEEEE
Q 006864 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPA-DKARAVGV------------------EL-VSFDQALATADFISL 289 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~~g~------------------~~-~sl~ell~~aDvV~l 289 (628)
++|+|||+|.||..+|..|.. |++|++||+.... +...+.+. .. .++.+.+++||+|++
T Consensus 1 MkI~VIG~G~vG~~~A~~La~-G~~V~~~d~~~~~~~~l~~~~~~i~e~~l~~~~~~~~~~l~~t~~~~~~~~~aDvvii 79 (402)
T 1dlj_A 1 MKIAVAGSGYVGLSLGVLLSL-QNEVTIVDILPSKVDKINNGLSPIQDEYIEYYLKSKQLSIKATLDSKAAYKEAELVII 79 (402)
T ss_dssp CEEEEECCSHHHHHHHHHHTT-TSEEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEESCHHHHHHHCSEEEE
T ss_pred CEEEEECCCHHHHHHHHHHhC-CCEEEEEECCHHHHHHHHcCCCCcCCCCHHHHHHhccCcEEEeCCHHHHhcCCCEEEE
Confidence 479999999999999999998 9999999986422 22222222 22 257788899999999
Q ss_pred cCCCCcc----------ccccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhCCCe
Q 006864 290 HMPLNPT----------TSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVV 338 (628)
Q Consensus 290 ~~Plt~~----------t~~li~~~~l~~mk~gailIN~aRg~~vde~aL~~aL~~g~i 338 (628)
++|.... ....+ +.... ++++.++|+.+.-++-..+.+.+.+....+
T Consensus 80 avpt~~~~~~~~~dl~~v~~v~-~~i~~-l~~~~iVV~~ST~~~g~~~~l~~~~~~~~v 136 (402)
T 1dlj_A 80 ATPTNYNSRINYFDTQHVETVI-KEVLS-VNSHATLIIKSTIPIGFITEMRQKFQTDRI 136 (402)
T ss_dssp CCCCCEETTTTEECCHHHHHHH-HHHHH-HCSSCEEEECSCCCTTHHHHHHHHTTCSCE
T ss_pred ecCCCcccCCCCccHHHHHHHH-HHHHh-hCCCCEEEEeCCCCccHHHHHHHHhCCCeE
Confidence 9996531 22222 33445 899999999877777777788887766544
|
| >2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.09 E-value=8.6e-06 Score=89.99 Aligned_cols=106 Identities=14% Similarity=0.079 Sum_probs=74.1
Q ss_pred CeEEEEecChhHHHHHHHHHcC--CCEEEEECCCCChhHHHHc--------------------CCcc-cCHHHHhccCCE
Q 006864 230 KTLAVMGFGKVGSEVARRAKGL--GMNVIAHDPYAPADKARAV--------------------GVEL-VSFDQALATADF 286 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~--G~~V~~~d~~~~~~~a~~~--------------------g~~~-~sl~ell~~aDv 286 (628)
++|+|||+|.||..+|..|... |++|++||+.......... ++.. .++.+.+++||+
T Consensus 10 mkI~VIG~G~vG~~~A~~La~~g~g~~V~~~D~~~~~v~~l~~g~~~i~e~gl~~~~~~~~~~~l~~t~~~~~~~~~aDv 89 (481)
T 2o3j_A 10 SKVVCVGAGYVGGPTCAMIAHKCPHITVTVVDMNTAKIAEWNSDKLPIYEPGLDEIVFAARGRNLFFSSDIPKAIAEADL 89 (481)
T ss_dssp CEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCHHHHHHHTSSSCSSCCTTHHHHHHHHBTTTEEEESCHHHHHHHCSE
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHHhhcCCEEEECCHHHHhhcCCE
Confidence 5899999999999999999876 7999999976421111111 1222 256788899999
Q ss_pred EEEcCCCCccc-----------cccc--cHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhC
Q 006864 287 ISLHMPLNPTT-----------SKIF--NDETFAKMKKGVRIVNVARGGVIDEEALVRALDS 335 (628)
Q Consensus 287 V~l~~Plt~~t-----------~~li--~~~~l~~mk~gailIN~aRg~~vde~aL~~aL~~ 335 (628)
|++|+|..... ..+. -+.....++++.+||+++.-.+-..+.+.+.+.+
T Consensus 90 vii~Vptp~~~~g~~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~~gt~~~l~~~l~~ 151 (481)
T 2o3j_A 90 IFISVNTPTKMYGRGKGMAPDLKYVESVSRTIAQYAGGPKIVVEKSTVPVKAAESIGCILRE 151 (481)
T ss_dssp EEECCCCCBCCSSTTTTTSBCCHHHHHHHHHHHHHCCSCEEEEECSCCCTTHHHHHHHHHHH
T ss_pred EEEecCCccccccccccCCCcHHHHHHHHHHHHHhCCCCCEEEECCCCCCCHHHHHHHHHHH
Confidence 99999854321 0111 1344567999999999886666556667777765
|
| >1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6 | Back alignment and structure |
|---|
Probab=98.06 E-value=4.9e-06 Score=86.50 Aligned_cols=103 Identities=15% Similarity=0.147 Sum_probs=71.9
Q ss_pred CeEEEEecChhHHHHHHHHHcCCCEEEEECC--CCC-hhHHHHcCC-----------ccc---CHHHHhccCCEEEEcCC
Q 006864 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDP--YAP-ADKARAVGV-----------ELV---SFDQALATADFISLHMP 292 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~--~~~-~~~a~~~g~-----------~~~---sl~ell~~aDvV~l~~P 292 (628)
++|+|||+|.||+.+|..|...|++|.+||+ ... .+...+.+. ... ++.+.++++|+|++++|
T Consensus 1 m~I~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~D~vi~~v~ 80 (335)
T 1txg_A 1 MIVSILGAGAMGSALSVPLVDNGNEVRIWGTEFDTEILKSISAGREHPRLGVKLNGVEIFWPEQLEKCLENAEVVLLGVS 80 (335)
T ss_dssp CEEEEESCCHHHHHHHHHHHHHCCEEEEECCGGGHHHHHHHHTTCCBTTTTBCCCSEEEECGGGHHHHHTTCSEEEECSC
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEEccCCHHHHHHHHHhCcCcccCccccceEEecHHhHHHHHhcCCEEEEcCC
Confidence 4799999999999999999988999999998 532 222233332 222 57788899999999999
Q ss_pred CCccccccccHHHHhcCCCCcEEEEcCCCc---h-hcHHHHHHHHhC
Q 006864 293 LNPTTSKIFNDETFAKMKKGVRIVNVARGG---V-IDEEALVRALDS 335 (628)
Q Consensus 293 lt~~t~~li~~~~l~~mk~gailIN~aRg~---~-vde~aL~~aL~~ 335 (628)
-. .+..++ ..... ++++.++|++..|- - -..+.+.+.+.+
T Consensus 81 ~~-~~~~v~-~~i~~-l~~~~~vv~~~ng~~~~~~~~~~~l~~~~~~ 124 (335)
T 1txg_A 81 TD-GVLPVM-SRILP-YLKDQYIVLISKGLIDFDNSVLTVPEAVWRL 124 (335)
T ss_dssp GG-GHHHHH-HHHTT-TCCSCEEEECCCSEEEETTEEEEHHHHHHTT
T ss_pred hH-HHHHHH-HHHhc-CCCCCEEEEEcCcCccCCCCcCccHHHHHHH
Confidence 44 344443 33445 78899999998764 1 122345555554
|
| >2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A* | Back alignment and structure |
|---|
Probab=98.03 E-value=9.6e-06 Score=89.58 Aligned_cols=104 Identities=19% Similarity=0.163 Sum_probs=70.6
Q ss_pred CeEEEEecChhHHHHHHHHHcCCCEEEEECCCCCh-hHHHHc-------C-------------Ccc-cCHHHHhccCCEE
Q 006864 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPA-DKARAV-------G-------------VEL-VSFDQALATADFI 287 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~~-------g-------------~~~-~sl~ell~~aDvV 287 (628)
++|+|||+|.||..+|..|...|++|++||+.... +...+. | +.. .++++.+++||+|
T Consensus 9 ~~I~VIG~G~vG~~lA~~la~~G~~V~~~d~~~~~v~~l~~~~~~i~e~gl~~~l~~~~~~~~l~~ttd~~~a~~~aDvv 88 (478)
T 2y0c_A 9 MNLTIIGSGSVGLVTGACLADIGHDVFCLDVDQAKIDILNNGGVPIHEPGLKEVIARNRSAGRLRFSTDIEAAVAHGDVQ 88 (478)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEECCHHHHHHHCSEE
T ss_pred ceEEEECcCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHHhcccCCEEEECCHHHHhhcCCEE
Confidence 69999999999999999999999999999986421 111111 1 122 2677888999999
Q ss_pred EEcCCCCc---------cccccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHh
Q 006864 288 SLHMPLNP---------TTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALD 334 (628)
Q Consensus 288 ~l~~Plt~---------~t~~li~~~~l~~mk~gailIN~aRg~~vde~aL~~aL~ 334 (628)
++|+|... ..+..+ +.....+++++++|+.+.-.+=..+.+.+.+.
T Consensus 89 iiaVptp~~~~~~~dl~~v~~v~-~~i~~~l~~~~iVV~~STv~~gt~~~l~~~l~ 143 (478)
T 2y0c_A 89 FIAVGTPPDEDGSADLQYVLAAA-RNIGRYMTGFKVIVDKSTVPVGTAERVRAAVA 143 (478)
T ss_dssp EECCCCCBCTTSSBCCHHHHHHH-HHHHHHCCSCEEEEECSCCCTTHHHHHHHHHH
T ss_pred EEEeCCCcccCCCccHHHHHHHH-HHHHHhcCCCCEEEEeCCcCCCchHHHHHHHH
Confidence 99999531 122222 33455699999999998433333344444443
|
| >3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=98.02 E-value=1.2e-05 Score=85.54 Aligned_cols=104 Identities=17% Similarity=0.203 Sum_probs=75.0
Q ss_pred CCeEEEEecChhHHHHHHHHHcCCCEEEEECCCCC-hhHHHHcC--------------Ccc-cCHHHHhccCCEEEEcCC
Q 006864 229 GKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAP-ADKARAVG--------------VEL-VSFDQALATADFISLHMP 292 (628)
Q Consensus 229 GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~g--------------~~~-~sl~ell~~aDvV~l~~P 292 (628)
-++|+|||.|.+|..+|..|...|.+|.+||+... .+...+.+ +.. .++++.++.||+|++++|
T Consensus 29 ~mkI~VIGaG~mG~alA~~La~~G~~V~l~~r~~~~~~~i~~~~~~~~~l~g~~l~~~i~~t~d~~ea~~~aDvVilaVp 108 (356)
T 3k96_A 29 KHPIAILGAGSWGTALALVLARKGQKVRLWSYESDHVDEMQAEGVNNRYLPNYPFPETLKAYCDLKASLEGVTDILIVVP 108 (356)
T ss_dssp CSCEEEECCSHHHHHHHHHHHTTTCCEEEECSCHHHHHHHHHHSSBTTTBTTCCCCTTEEEESCHHHHHTTCCEEEECCC
T ss_pred CCeEEEECccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCCCcccCCCCccCCCeEEECCHHHHHhcCCEEEECCC
Confidence 46899999999999999999999999999998642 22222222 112 378899999999999999
Q ss_pred CCccccccccHHHHhcCCCCcEEEEcCCCchhcH----HHHHHHHh
Q 006864 293 LNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDE----EALVRALD 334 (628)
Q Consensus 293 lt~~t~~li~~~~l~~mk~gailIN~aRg~~vde----~aL~~aL~ 334 (628)
-. ..+.++ ++....+++++++|++..|=..+. +.+.+.+.
T Consensus 109 ~~-~~~~vl-~~i~~~l~~~~ivvs~~kGi~~~t~~~se~i~~~l~ 152 (356)
T 3k96_A 109 SF-AFHEVI-TRMKPLIDAKTRIAWGTKGLAKGSRLLHEVVATELG 152 (356)
T ss_dssp HH-HHHHHH-HHHGGGCCTTCEEEECCCSCBTTTBCHHHHHHHHHC
T ss_pred HH-HHHHHH-HHHHHhcCCCCEEEEEeCCCCcCccCHHHHHHHHcC
Confidence 33 334333 444556889999999987655442 44555554
|
| >1y7p_A Hypothetical protein AF1403; structural genomics, protein structure initiative, PSI, alpha-beta-alpha sandwich; HET: RIP; 1.90A {Archaeoglobus fulgidus} SCOP: c.23.1.7 d.58.18.12 | Back alignment and structure |
|---|
Probab=98.02 E-value=5.1e-06 Score=81.64 Aligned_cols=68 Identities=10% Similarity=0.196 Sum_probs=57.3
Q ss_pred EEEEeccCCCCchhhHHhhhhcCCccccceEEeeeecC---ccEEEEEEeCCCCCHHHHHHHhcccCcccc
Q 006864 560 LILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRR---NHGIMAIGVDEEPNQDSLKEIGKVHFVARI 627 (628)
Q Consensus 560 ~Llv~~~D~PGvIa~V~~iL~~~~INIa~m~v~R~~~g---g~Al~~i~vD~~~~~~~l~~L~~l~~v~~v 627 (628)
.|.+.+.|+||+++.|+++|+++++||.+|+..+..+| +.|.+.+++++...++++++|+++++|.+|
T Consensus 6 tL~I~a~DRpGLLsDIt~vLAe~kiNIltIn~~~~~kG~~ng~A~I~IEV~d~~Le~LL~kLrkI~gV~~V 76 (223)
T 1y7p_A 6 GLRIIAENKIGVLRDLTTIIAEEGGNITFAQTFLIKHGEHEGKALIYFEIEGGDFEKILERVKTFDYIIEI 76 (223)
T ss_dssp EEEEEEECCTTHHHHHHHHCC----CEEEEEEEECCSSTTTTEEEEEEEECSSCHHHHHHHHHTCTTEEEE
T ss_pred EEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEEccccCCcCCEEEEEEEECCCCHHHHHHHHhCCCCeeEE
Confidence 57788999999999999999999999999999887643 479999999999666999999999999886
|
| >1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A* | Back alignment and structure |
|---|
Probab=98.00 E-value=1.2e-05 Score=93.13 Aligned_cols=113 Identities=18% Similarity=0.270 Sum_probs=77.4
Q ss_pred CeEEEEecChhHHHHHHHHHcCCCEEEEECCCCCh-hHH-----------HHcCC-------------cc-cCHHHHhcc
Q 006864 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPA-DKA-----------RAVGV-------------EL-VSFDQALAT 283 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a-----------~~~g~-------------~~-~sl~ell~~ 283 (628)
++|||||+|.||..+|..+...|++|++||+.... +.. .+.|. .. .++ +.+++
T Consensus 315 ~kV~VIGaG~MG~~iA~~la~aG~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~d~-~~~~~ 393 (715)
T 1wdk_A 315 KQAAVLGAGIMGGGIAYQSASKGTPILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRPTLSY-GDFGN 393 (715)
T ss_dssp SSEEEECCHHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEEESSS-TTGGG
T ss_pred CEEEEECCChhhHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcCeEEECCH-HHHCC
Confidence 68999999999999999999999999999987421 111 11221 11 245 67899
Q ss_pred CCEEEEcCCCCccccccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhCC-CeeEEEeeccC
Q 006864 284 ADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSG-VVAQAALDVFT 347 (628)
Q Consensus 284 aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~~vde~aL~~aL~~g-~i~ga~lDV~~ 347 (628)
||+|+.++|-..+.+.-+-.+..+.++++++|+..+.+-.+ ..+.+.++.. ++ .+++.|.
T Consensus 394 aDlVIeaV~e~~~vk~~v~~~l~~~~~~~~IlasntStl~i--~~la~~~~~~~~~--ig~hf~~ 454 (715)
T 1wdk_A 394 VDLVVEAVVENPKVKQAVLAEVENHVREDAILASNTSTISI--SLLAKALKRPENF--VGMHFFN 454 (715)
T ss_dssp CSEEEECCCSCHHHHHHHHHHHHTTSCTTCEEEECCSSSCH--HHHGGGCSCGGGE--EEEECCS
T ss_pred CCEEEEcCCCCHHHHHHHHHHHHhhCCCCeEEEeCCCCCCH--HHHHHHhcCccce--EEEEccC
Confidence 99999999977665544445556678999999855444333 4555655432 34 5566665
|
| >1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2 | Back alignment and structure |
|---|
Probab=98.00 E-value=1.2e-05 Score=82.79 Aligned_cols=82 Identities=13% Similarity=0.262 Sum_probs=68.9
Q ss_pred ceeeecCCeEEEEecCh-hHHHHHHHHHcCCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEcCCCCccccccc
Q 006864 223 VGVSLVGKTLAVMGFGK-VGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIF 301 (628)
Q Consensus 223 ~g~~l~GktiGIIGlG~-IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~sl~ell~~aDvV~l~~Plt~~t~~li 301 (628)
.+.++.||++.|||.|. +|+.+|+.|.+.|+.|..++++. .+|.+.+++||+|+.+++. .+++
T Consensus 153 ~~i~l~gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t------------~~L~~~~~~ADIVI~Avg~----p~lI 216 (288)
T 1b0a_A 153 YNIDTFGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFT------------KNLRHHVENADLLIVAVGK----PGFI 216 (288)
T ss_dssp TTCCCTTCEEEEECCCTTTHHHHHHHHHTTTCEEEEECSSC------------SCHHHHHHHCSEEEECSCC----TTCB
T ss_pred cCCCCCCCEEEEECCChHHHHHHHHHHHHCCCeEEEEeCCc------------hhHHHHhccCCEEEECCCC----cCcC
Confidence 35789999999999997 59999999999999999998543 3688999999999999982 3367
Q ss_pred cHHHHhcCCCCcEEEEcCCCch
Q 006864 302 NDETFAKMKKGVRIVNVARGGV 323 (628)
Q Consensus 302 ~~~~l~~mk~gailIN~aRg~~ 323 (628)
..+. +|+|+++||+|.-.+
T Consensus 217 ~~~~---vk~GavVIDVgi~r~ 235 (288)
T 1b0a_A 217 PGDW---IKEGAIVIDVGINRL 235 (288)
T ss_dssp CTTT---SCTTCEEEECCCEEC
T ss_pred CHHH---cCCCcEEEEccCCcc
Confidence 6655 499999999997553
|
| >3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A* | Back alignment and structure |
|---|
Probab=97.99 E-value=1.6e-05 Score=86.59 Aligned_cols=107 Identities=17% Similarity=0.230 Sum_probs=74.1
Q ss_pred ecCCeEEEEecChhHHHHHHHHHcCCCEEEEECCCCChhHHHHcCCc---ccCHHHH---------------hccCCEEE
Q 006864 227 LVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVE---LVSFDQA---------------LATADFIS 288 (628)
Q Consensus 227 l~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~---~~sl~el---------------l~~aDvV~ 288 (628)
-+|.++-|||+|.+|..+|..|...|++|++||+....-.....|.. ...++++ +++||+|+
T Consensus 9 ~~~~~~~ViGlGyvGlp~A~~La~~G~~V~~~D~~~~kv~~L~~g~~pi~epgl~~ll~~~~~~g~l~~ttd~~~aDvvi 88 (431)
T 3ojo_A 9 HHGSKLTVVGLGYIGLPTSIMFAKHGVDVLGVDINQQTIDKLQNGQISIEEPGLQEVYEEVLSSGKLKVSTTPEASDVFI 88 (431)
T ss_dssp ---CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEESSCCCCSEEE
T ss_pred ccCCccEEEeeCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHhhcccCceEEeCchhhCCEEE
Confidence 46889999999999999999999999999999987532222222211 1134433 35799999
Q ss_pred EcCCCCcccc--------cccc--HHHHhcCCCCcEEEEcCCCchhcHHHHHHHH
Q 006864 289 LHMPLNPTTS--------KIFN--DETFAKMKKGVRIVNVARGGVIDEEALVRAL 333 (628)
Q Consensus 289 l~~Plt~~t~--------~li~--~~~l~~mk~gailIN~aRg~~vde~aL~~aL 333 (628)
+|+|...... .+.. +...+.|++|.++|+.+.-.+-..+.+.+.+
T Consensus 89 i~VpTp~~~~~~~~~Dl~~V~~~~~~i~~~l~~g~iVV~~STV~pgtt~~v~~~i 143 (431)
T 3ojo_A 89 IAVPTPNNDDQYRSCDISLVMRALDSILPFLKKGNTIIVESTIAPKTMDDFVKPV 143 (431)
T ss_dssp ECCCCCBCSSSSCBBCCHHHHHHHHHHGGGCCTTEEEEECSCCCTTHHHHTHHHH
T ss_pred EEeCCCccccccCCccHHHHHHHHHHHHHhCCCCCEEEEecCCChhHHHHHHHHH
Confidence 9999544221 2222 4556679999999999977776677776654
|
| >1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A* | Back alignment and structure |
|---|
Probab=97.99 E-value=7.6e-06 Score=86.02 Aligned_cols=92 Identities=21% Similarity=0.208 Sum_probs=67.3
Q ss_pred CeEEEEecChhHHHHHHHHHcCC-------CEEEEECCCCC-----h-hHHHHc--------------CCcc-cCHHHHh
Q 006864 230 KTLAVMGFGKVGSEVARRAKGLG-------MNVIAHDPYAP-----A-DKARAV--------------GVEL-VSFDQAL 281 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~G-------~~V~~~d~~~~-----~-~~a~~~--------------g~~~-~sl~ell 281 (628)
++|+|||+|.||..+|..|...| .+|.+||+... . +...+. ++.. .++++++
T Consensus 9 mkI~iIG~G~mG~~~a~~l~~~g~~~~~~~~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (354)
T 1x0v_A 9 KKVCIVGSGNWGSAIAKIVGGNAAQLAQFDPRVTMWVFEEDIGGKKLTEIINTQHENVKYLPGHKLPPNVVAVPDVVQAA 88 (354)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHHHCTTEEEEEEEECCCCBSSSSBHHHHHHHHSCCTTTSTTCCCCTTEEEESSHHHHH
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEcChhhhhhHHHHHHHhcCcccccCCcccCccCeEEEcCHHHHH
Confidence 58999999999999999998878 89999998754 2 111211 1222 3688889
Q ss_pred ccCCEEEEcCCCCccccccccHHHHhcCCCCcEEEEcCCCch
Q 006864 282 ATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGV 323 (628)
Q Consensus 282 ~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~~ 323 (628)
++||+|++++|- ..+..++ ++....+++++++|++..|-.
T Consensus 89 ~~aD~Vilav~~-~~~~~v~-~~i~~~l~~~~ivv~~~~Gi~ 128 (354)
T 1x0v_A 89 EDADILIFVVPH-QFIGKIC-DQLKGHLKANATGISLIKGVD 128 (354)
T ss_dssp TTCSEEEECCCG-GGHHHHH-HHHTTCSCTTCEEEECCCCBC
T ss_pred cCCCEEEEeCCH-HHHHHHH-HHHHhhCCCCCEEEEECCccC
Confidence 999999999994 3334433 334456788999999987654
|
| >4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major} | Back alignment and structure |
|---|
Probab=97.99 E-value=1.2e-05 Score=83.30 Aligned_cols=81 Identities=26% Similarity=0.310 Sum_probs=67.4
Q ss_pred ceeeecCCeEEEEecCh-hHHHHHHHHHcCCCEEEEECCCCChhHHHHcCCcccCHH--HHhccCCEEEEcCCCCccccc
Q 006864 223 VGVSLVGKTLAVMGFGK-VGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFD--QALATADFISLHMPLNPTTSK 299 (628)
Q Consensus 223 ~g~~l~GktiGIIGlG~-IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~sl~--ell~~aDvV~l~~Plt~~t~~ 299 (628)
.+.++.||++.|||.|. +|+.+|..|.+.|+.|..++++.. +++ +.+++||+|+.++|. .+
T Consensus 159 ~~i~l~Gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~~~~T~------------~l~l~~~~~~ADIVI~Avg~----p~ 222 (300)
T 4a26_A 159 CGIEMAGKRAVVLGRSNIVGAPVAALLMKENATVTIVHSGTS------------TEDMIDYLRTADIVIAAMGQ----PG 222 (300)
T ss_dssp HTCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTSC------------HHHHHHHHHTCSEEEECSCC----TT
T ss_pred cCCCCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCCC------------CchhhhhhccCCEEEECCCC----CC
Confidence 35789999999999998 699999999999999999987532 344 889999999999994 34
Q ss_pred cccHHHHhcCCCCcEEEEcCCCc
Q 006864 300 IFNDETFAKMKKGVRIVNVARGG 322 (628)
Q Consensus 300 li~~~~l~~mk~gailIN~aRg~ 322 (628)
++..+. +|+|+++||++.-.
T Consensus 223 ~I~~~~---vk~GavVIDvgi~~ 242 (300)
T 4a26_A 223 YVKGEW---IKEGAAVVDVGTTP 242 (300)
T ss_dssp CBCGGG---SCTTCEEEECCCEE
T ss_pred CCcHHh---cCCCcEEEEEeccC
Confidence 566644 59999999998544
|
| >4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1} | Back alignment and structure |
|---|
Probab=97.98 E-value=1.4e-05 Score=82.04 Aligned_cols=81 Identities=20% Similarity=0.300 Sum_probs=68.3
Q ss_pred ceeeecCCeEEEEecCh-hHHHHHHHHHcCCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEcCCCCccccccc
Q 006864 223 VGVSLVGKTLAVMGFGK-VGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIF 301 (628)
Q Consensus 223 ~g~~l~GktiGIIGlG~-IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~sl~ell~~aDvV~l~~Plt~~t~~li 301 (628)
.+.++.||++.|||.|. +|+.+|..|.+.|+.|...+++. .+|++.+++||+|+.++|. .+++
T Consensus 155 ~~i~l~Gk~vvVvGrs~iVG~plA~lL~~~gAtVtv~hs~T------------~~L~~~~~~ADIVI~Avg~----p~~I 218 (286)
T 4a5o_A 155 TGADLYGMDAVVVGASNIVGRPMALELLLGGCTVTVTHRFT------------RDLADHVSRADLVVVAAGK----PGLV 218 (286)
T ss_dssp TTCCCTTCEEEEECTTSTTHHHHHHHHHHTTCEEEEECTTC------------SCHHHHHHTCSEEEECCCC----TTCB
T ss_pred hCCCCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCC------------cCHHHHhccCCEEEECCCC----CCCC
Confidence 46789999999999987 79999999999999999987642 2688999999999999983 3467
Q ss_pred cHHHHhcCCCCcEEEEcCCCc
Q 006864 302 NDETFAKMKKGVRIVNVARGG 322 (628)
Q Consensus 302 ~~~~l~~mk~gailIN~aRg~ 322 (628)
..+. +|+|+++||++.-.
T Consensus 219 ~~~~---vk~GavVIDvgi~~ 236 (286)
T 4a5o_A 219 KGEW---IKEGAIVIDVGINR 236 (286)
T ss_dssp CGGG---SCTTCEEEECCSCS
T ss_pred CHHH---cCCCeEEEEecccc
Confidence 6654 59999999998654
|
| >3ulk_A Ketol-acid reductoisomerase; branched-chain amino acid biosynthesis, rossmann fold, acetolactate, oxidoreductase; HET: CSX NDP; 2.30A {Escherichia coli} PDB: 1yrl_A* | Back alignment and structure |
|---|
Probab=97.98 E-value=1.1e-05 Score=87.00 Aligned_cols=94 Identities=20% Similarity=0.286 Sum_probs=76.2
Q ss_pred eecCCeEEEEecChhHHHHHHHHHcCCCEEEEECC-------CCChhHHHHcCCcccCHHHHhccCCEEEEcCCCCcccc
Q 006864 226 SLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDP-------YAPADKARAVGVELVSFDQALATADFISLHMPLNPTTS 298 (628)
Q Consensus 226 ~l~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~-------~~~~~~a~~~g~~~~sl~ell~~aDvV~l~~Plt~~t~ 298 (628)
-|+||||+|||||.-|.+-|..|+.-|.+|++--+ +.+...+.+.|++..+..|+.++||+|.+.+|-..+ .
T Consensus 34 ~lkgK~IaVIGyGsQG~AqAlNLRDSGv~V~Vglr~~s~~e~~~S~~~A~~~Gf~v~~~~eA~~~ADvV~~L~PD~~q-~ 112 (491)
T 3ulk_A 34 YLQGKKVVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATENGFKVGTYEELIPQADLVINLTPDKQH-S 112 (491)
T ss_dssp GGTTSEEEEESCSHHHHHHHHHHHHTTCEEEEEECHHHHHTTCHHHHHHHHTTCEEEEHHHHGGGCSEEEECSCGGGH-H
T ss_pred HHcCCEEEEeCCChHhHHHHhHHHhcCCcEEEEeCCCCcccccchHHHHHHCCCEecCHHHHHHhCCEEEEeCChhhH-H
Confidence 48999999999999999999999999999887532 123456788899989999999999999999994432 3
Q ss_pred ccccHHHHhcCCCCcEEEEcCCCc
Q 006864 299 KIFNDETFAKMKKGVRIVNVARGG 322 (628)
Q Consensus 299 ~li~~~~l~~mk~gailIN~aRg~ 322 (628)
.++ +.....||+|+.|. .+.|=
T Consensus 113 ~vy-~~I~p~lk~G~~L~-faHGF 134 (491)
T 3ulk_A 113 DVV-RTVQPLMKDGAALG-YSHGF 134 (491)
T ss_dssp HHH-HHHGGGSCTTCEEE-ESSCH
T ss_pred HHH-HHHHhhCCCCCEEE-ecCcc
Confidence 344 46888999999887 45553
|
| >3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1} | Back alignment and structure |
|---|
Probab=97.98 E-value=1.3e-05 Score=88.59 Aligned_cols=102 Identities=17% Similarity=0.155 Sum_probs=73.2
Q ss_pred CeEEEEecChhHHHHHHHHHcC-CC-EEEEECCCCC----hhHHHH----------------------cC-CcccCHHHH
Q 006864 230 KTLAVMGFGKVGSEVARRAKGL-GM-NVIAHDPYAP----ADKARA----------------------VG-VELVSFDQA 280 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~-G~-~V~~~d~~~~----~~~a~~----------------------~g-~~~~sl~el 280 (628)
++|+|||+|.+|..+|..|... |+ +|++||+... .-.... .+ +...+-.+.
T Consensus 19 mkIaVIGlG~mG~~lA~~la~~~G~~~V~~~D~~~~~~~~kv~~l~~g~~~i~~~e~gl~~l~~~~~~~g~l~~ttd~ea 98 (478)
T 3g79_A 19 KKIGVLGMGYVGIPAAVLFADAPCFEKVLGFQRNSKSSGYKIEMLNRGESPLKGEEPGLEELIGKVVKAGKFECTPDFSR 98 (478)
T ss_dssp CEEEEECCSTTHHHHHHHHHHSTTCCEEEEECCCCTTTTTHHHHHTTTCCCSSCCGGGHHHHHHHHHHTTCEEEESCGGG
T ss_pred CEEEEECcCHHHHHHHHHHHHhCCCCeEEEEECChhHhHHHHHHHHhcCCCccccCCCHHHHHHhhcccCCeEEeCcHHH
Confidence 6899999999999999999999 99 9999998765 221111 11 122222678
Q ss_pred hccCCEEEEcCCCCc--------ccccccc--HHHHhcCCCCcEEEEcCCCchhcHHHHHH
Q 006864 281 LATADFISLHMPLNP--------TTSKIFN--DETFAKMKKGVRIVNVARGGVIDEEALVR 331 (628)
Q Consensus 281 l~~aDvV~l~~Plt~--------~t~~li~--~~~l~~mk~gailIN~aRg~~vde~aL~~ 331 (628)
+++||+|++++|... +...+.. +.....|++|.++|+++.-.+-..+.+.+
T Consensus 99 ~~~aDvViiaVptp~~~~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~pgtt~~v~~ 159 (478)
T 3g79_A 99 ISELDAVTLAIQTPFANPKDLEPDFSALIDGIRNVGKYLKPGMLVVLESTITPGTTEGMAK 159 (478)
T ss_dssp GGGCSEEEECCCCCCCSSCCSSCCCHHHHHHHHHHHHHCCTTCEEEECSCCCTTTTTTHHH
T ss_pred HhcCCEEEEecCCchhccCCccccHHHHHHHHHHHHhhcCCCcEEEEeCCCChHHHHHHHH
Confidence 899999999999653 2222322 45667799999999998766655555554
|
| >3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis} | Back alignment and structure |
|---|
Probab=97.97 E-value=1.8e-05 Score=81.43 Aligned_cols=81 Identities=16% Similarity=0.287 Sum_probs=67.9
Q ss_pred ceeeecCCeEEEEecCh-hHHHHHHHHHcCCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEcCCCCccccccc
Q 006864 223 VGVSLVGKTLAVMGFGK-VGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIF 301 (628)
Q Consensus 223 ~g~~l~GktiGIIGlG~-IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~sl~ell~~aDvV~l~~Plt~~t~~li 301 (628)
.+.++.||++.|||.|. +|+.+|..|.+.|+.|...+++. .+|++.+++||+|+.+++. .+++
T Consensus 155 ~~i~l~Gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t------------~~L~~~~~~ADIVI~Avg~----p~~I 218 (285)
T 3l07_A 155 YGIKTEGAYAVVVGASNVVGKPVSQLLLNAKATVTTCHRFT------------TDLKSHTTKADILIVAVGK----PNFI 218 (285)
T ss_dssp TTCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC------------SSHHHHHTTCSEEEECCCC----TTCB
T ss_pred hCCCCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCc------------hhHHHhcccCCEEEECCCC----CCCC
Confidence 45689999999999998 69999999999999999987642 2688999999999999983 3456
Q ss_pred cHHHHhcCCCCcEEEEcCCCc
Q 006864 302 NDETFAKMKKGVRIVNVARGG 322 (628)
Q Consensus 302 ~~~~l~~mk~gailIN~aRg~ 322 (628)
..+. +|+|+++||++.-.
T Consensus 219 ~~~~---vk~GavVIDvgi~~ 236 (285)
T 3l07_A 219 TADM---VKEGAVVIDVGINH 236 (285)
T ss_dssp CGGG---SCTTCEEEECCCEE
T ss_pred CHHH---cCCCcEEEEecccC
Confidence 6644 59999999998544
|
| >1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A* | Back alignment and structure |
|---|
Probab=97.96 E-value=2.3e-06 Score=90.67 Aligned_cols=92 Identities=16% Similarity=0.188 Sum_probs=67.1
Q ss_pred eEEEEecChhHHHHHHHHHcCCCEEEEECCCCC-hhHHHHcC--------------Ccc-cCHHHHhccCCEEEEcCCCC
Q 006864 231 TLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAP-ADKARAVG--------------VEL-VSFDQALATADFISLHMPLN 294 (628)
Q Consensus 231 tiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~g--------------~~~-~sl~ell~~aDvV~l~~Plt 294 (628)
+|+|||+|.||..+|..|...|++|.+||+... .+...+.+ +.. .+++++++.||+|++++|-
T Consensus 17 kI~iIG~G~mG~~la~~L~~~G~~V~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aDvVilav~~- 95 (366)
T 1evy_A 17 KAVVFGSGAFGTALAMVLSKKCREVCVWHMNEEEVRLVNEKRENVLFLKGVQLASNITFTSDVEKAYNGAEIILFVIPT- 95 (366)
T ss_dssp EEEEECCSHHHHHHHHHHTTTEEEEEEECSCHHHHHHHHHHTBCTTTSTTCBCCTTEEEESCHHHHHTTCSSEEECCCH-
T ss_pred eEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCcccccccccccccceeeeCCHHHHHcCCCEEEECCCh-
Confidence 899999999999999999999999999998742 22222222 222 3688889999999999993
Q ss_pred ccccccccHH---HHhcCCC-CcEEEEcCCCch
Q 006864 295 PTTSKIFNDE---TFAKMKK-GVRIVNVARGGV 323 (628)
Q Consensus 295 ~~t~~li~~~---~l~~mk~-gailIN~aRg~~ 323 (628)
..+..++... ....+++ ++++|++..|-.
T Consensus 96 ~~~~~v~~~~~~gl~~~l~~~~~ivv~~~~gi~ 128 (366)
T 1evy_A 96 QFLRGFFEKSGGNLIAYAKEKQVPVLVCTKGIE 128 (366)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHTCCEEECCCSCC
T ss_pred HHHHHHHHHhHHHHHHhcCccCCEEEEECCcCC
Confidence 4444444320 3445678 899999987643
|
| >2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=97.96 E-value=1.4e-05 Score=79.55 Aligned_cols=95 Identities=15% Similarity=0.249 Sum_probs=70.4
Q ss_pred CeEEEEecChhHHHHHHHHHcCCCEE-EEECCCCChhHHHHcCCcccCHHHHh-ccCCEEEEcCCCCccccccccHHHHh
Q 006864 230 KTLAVMGFGKVGSEVARRAKGLGMNV-IAHDPYAPADKARAVGVELVSFDQAL-ATADFISLHMPLNPTTSKIFNDETFA 307 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~G~~V-~~~d~~~~~~~a~~~g~~~~sl~ell-~~aDvV~l~~Plt~~t~~li~~~~l~ 307 (628)
.+|||||+|.||+.+++.+...|+++ .+||+....+ . ...++++++ .++|+|++++|-.. .-+....
T Consensus 1 m~vgiIG~G~mG~~~~~~l~~~g~~lv~v~d~~~~~~---~---~~~~~~~l~~~~~DvVv~~~~~~~-----~~~~~~~ 69 (236)
T 2dc1_A 1 MLVGLIGYGAIGKFLAEWLERNGFEIAAILDVRGEHE---K---MVRGIDEFLQREMDVAVEAASQQA-----VKDYAEK 69 (236)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEECSSCCCT---T---EESSHHHHTTSCCSEEEECSCHHH-----HHHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHhcCCCEEEEEEecCcchh---h---hcCCHHHHhcCCCCEEEECCCHHH-----HHHHHHH
Confidence 37999999999999999998889997 6889864211 1 344799999 69999999998321 1122345
Q ss_pred cCCCCcEEEEcCCCchhcH---HHHHHHHhC
Q 006864 308 KMKKGVRIVNVARGGVIDE---EALVRALDS 335 (628)
Q Consensus 308 ~mk~gailIN~aRg~~vde---~aL~~aL~~ 335 (628)
.++.|..+|+..-+..-+. +.|.++.++
T Consensus 70 ~l~~G~~vv~~~~~~~~~~~~~~~l~~~a~~ 100 (236)
T 2dc1_A 70 ILKAGIDLIVLSTGAFADRDFLSRVREVCRK 100 (236)
T ss_dssp HHHTTCEEEESCGGGGGSHHHHHHHHHHHHH
T ss_pred HHHCCCcEEEECcccCChHHHHHHHHHHHHh
Confidence 5788999999987776555 566666654
|
| >2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis} PDB: 2c2y_A | Back alignment and structure |
|---|
Probab=97.95 E-value=1.9e-05 Score=80.88 Aligned_cols=81 Identities=14% Similarity=0.258 Sum_probs=68.2
Q ss_pred eeeecCCeEEEEecChh-HHHHHHHHHcC--CCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEcCCCCcccccc
Q 006864 224 GVSLVGKTLAVMGFGKV-GSEVARRAKGL--GMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKI 300 (628)
Q Consensus 224 g~~l~GktiGIIGlG~I-G~~vA~~l~~~--G~~V~~~d~~~~~~~a~~~g~~~~sl~ell~~aDvV~l~~Plt~~t~~l 300 (628)
+.++.||++.|||.|.| |+.+|+.|.+. |+.|...++.. .+|.+.+++||+|+.+++. .++
T Consensus 153 ~i~l~gk~vvVvG~s~iVG~p~A~lL~~~g~~atVtv~h~~t------------~~L~~~~~~ADIVI~Avg~----p~~ 216 (281)
T 2c2x_A 153 DISIAGAHVVVIGRGVTVGRPLGLLLTRRSENATVTLCHTGT------------RDLPALTRQADIVVAAVGV----AHL 216 (281)
T ss_dssp TCCCTTCEEEEECCCTTTHHHHHHHHTSTTTCCEEEEECTTC------------SCHHHHHTTCSEEEECSCC----TTC
T ss_pred CCCCCCCEEEEECCCcHHHHHHHHHHhcCCCCCEEEEEECch------------hHHHHHHhhCCEEEECCCC----Ccc
Confidence 67899999999999985 99999999999 89999987653 3688999999999999982 335
Q ss_pred ccHHHHhcCCCCcEEEEcCCCch
Q 006864 301 FNDETFAKMKKGVRIVNVARGGV 323 (628)
Q Consensus 301 i~~~~l~~mk~gailIN~aRg~~ 323 (628)
+..+. +|+|+++||++.-.+
T Consensus 217 I~~~~---vk~GavVIDVgi~r~ 236 (281)
T 2c2x_A 217 LTADM---VRPGAAVIDVGVSRT 236 (281)
T ss_dssp BCGGG---SCTTCEEEECCEEEE
T ss_pred cCHHH---cCCCcEEEEccCCCC
Confidence 77665 489999999996553
|
| >3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A | Back alignment and structure |
|---|
Probab=97.95 E-value=2e-05 Score=80.58 Aligned_cols=77 Identities=10% Similarity=0.136 Sum_probs=65.5
Q ss_pred ecCCeEEEEecCh-hHHHHHHHHHcCCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEcCCCCccccccccHHH
Q 006864 227 LVGKTLAVMGFGK-VGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDET 305 (628)
Q Consensus 227 l~GktiGIIGlG~-IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~sl~ell~~aDvV~l~~Plt~~t~~li~~~~ 305 (628)
+.||++.|||.|. +|+.+|+.|.+.|++|..++++. .++++.+++||+|+.++|. .+++..+.
T Consensus 148 l~Gk~vvVvG~s~iVG~plA~lL~~~gAtVtv~~~~t------------~~L~~~~~~ADIVI~Avg~----p~~I~~~~ 211 (276)
T 3ngx_A 148 YHENTVTIVNRSPVVGRPLSMMLLNRNYTVSVCHSKT------------KDIGSMTRSSKIVVVAVGR----PGFLNREM 211 (276)
T ss_dssp CCSCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC------------SCHHHHHHHSSEEEECSSC----TTCBCGGG
T ss_pred cCCCEEEEEcCChHHHHHHHHHHHHCCCeEEEEeCCc------------ccHHHhhccCCEEEECCCC----CccccHhh
Confidence 8999999999986 79999999999999999998642 3688999999999999984 34666654
Q ss_pred HhcCCCCcEEEEcCCCc
Q 006864 306 FAKMKKGVRIVNVARGG 322 (628)
Q Consensus 306 l~~mk~gailIN~aRg~ 322 (628)
+|+|+++||++.-.
T Consensus 212 ---vk~GavVIDvgi~~ 225 (276)
T 3ngx_A 212 ---VTPGSVVIDVGINY 225 (276)
T ss_dssp ---CCTTCEEEECCCEE
T ss_pred ---ccCCcEEEEeccCc
Confidence 59999999998644
|
| >2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.93 E-value=2.7e-05 Score=90.19 Aligned_cols=113 Identities=12% Similarity=0.110 Sum_probs=76.4
Q ss_pred CeEEEEecChhHHHHHHHHHcCCCEEEEECCCCCh-hHHHH-----------cCC-------------cc-cCHHHHhcc
Q 006864 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPA-DKARA-----------VGV-------------EL-VSFDQALAT 283 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~-----------~g~-------------~~-~sl~ell~~ 283 (628)
++|||||+|.||..+|..+...|++|++||+.... +.... .|. .. .++ +.+++
T Consensus 313 ~kV~VIGaG~MG~~iA~~la~aG~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~d~-~~~~~ 391 (725)
T 2wtb_A 313 KKVAIIGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVKANLQSRVRKGSMSQEKFEKTMSLLKGSLDY-ESFRD 391 (725)
T ss_dssp CCEEEECCSHHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHHHHHHHHTTC----CTTHHHHTTTSEEEESSS-GGGTT
T ss_pred cEEEEEcCCHhhHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcceEEeCCH-HHHCC
Confidence 68999999999999999999999999999987421 11110 121 11 245 57899
Q ss_pred CCEEEEcCCCCccccccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhC-CCeeEEEeeccC
Q 006864 284 ADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDS-GVVAQAALDVFT 347 (628)
Q Consensus 284 aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~~vde~aL~~aL~~-g~i~ga~lDV~~ 347 (628)
||+|+.++|-..+.+.-+-.+..+.++++++|+....+-.+ ..+.+.++. .++ .+.+.|.
T Consensus 392 aDlVIeaVpe~~~vk~~v~~~l~~~~~~~~IlasntStl~i--~~la~~~~~p~~~--iG~hf~~ 452 (725)
T 2wtb_A 392 VDMVIEAVIENISLKQQIFADLEKYCPQHCILASNTSTIDL--NKIGERTKSQDRI--VGAHFFS 452 (725)
T ss_dssp CSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSSSCH--HHHTTTCSCTTTE--EEEEECS
T ss_pred CCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEeCCCCCCH--HHHHHHhcCCCCE--EEecCCC
Confidence 99999999977655544445566679999999655444333 345555533 244 5556665
|
| >1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A* | Back alignment and structure |
|---|
Probab=97.93 E-value=2.1e-05 Score=81.34 Aligned_cols=83 Identities=18% Similarity=0.270 Sum_probs=68.9
Q ss_pred ceeeecCCeEEEEecCh-hHHHHHHHHHcCCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEcCCCCccccccc
Q 006864 223 VGVSLVGKTLAVMGFGK-VGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIF 301 (628)
Q Consensus 223 ~g~~l~GktiGIIGlG~-IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~sl~ell~~aDvV~l~~Plt~~t~~li 301 (628)
.+.++.||++.|||.|. +|+.+|+.|.+.|++|..+++.. .+|.+.+++||+|+.+++. .+++
T Consensus 159 ~~i~l~gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t------------~~L~~~~~~ADIVI~Avg~----p~~I 222 (301)
T 1a4i_A 159 TGVPIAGRHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSKT------------AHLDEEVNKGDILVVATGQ----PEMV 222 (301)
T ss_dssp TTCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC------------SSHHHHHTTCSEEEECCCC----TTCB
T ss_pred cCCCCCCCEEEEECCCchHHHHHHHHHHhCCCeEEEEECCc------------ccHHHHhccCCEEEECCCC----cccC
Confidence 46789999999999997 69999999999999999997542 3688999999999999984 3457
Q ss_pred cHHHHhcCCCCcEEEEcCCCchh
Q 006864 302 NDETFAKMKKGVRIVNVARGGVI 324 (628)
Q Consensus 302 ~~~~l~~mk~gailIN~aRg~~v 324 (628)
..+. +|+|+++||++.-.+-
T Consensus 223 ~~~~---vk~GavVIDVgi~~~~ 242 (301)
T 1a4i_A 223 KGEW---IKPGAIVIDCGINYVP 242 (301)
T ss_dssp CGGG---SCTTCEEEECCCBC--
T ss_pred CHHH---cCCCcEEEEccCCCcc
Confidence 6655 5899999999976543
|
| >3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A* | Back alignment and structure |
|---|
Probab=97.93 E-value=2e-05 Score=80.75 Aligned_cols=105 Identities=16% Similarity=0.088 Sum_probs=75.2
Q ss_pred CCeEEEEecChhHHHHHHHHHcCCCEEEEECCCCChh-HHHHcCCcccCHHHHhccCCEEEEcCCCCccccccccHHHHh
Q 006864 229 GKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPAD-KARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFA 307 (628)
Q Consensus 229 GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~-~a~~~g~~~~sl~ell~~aDvV~l~~Plt~~t~~li~~~~l~ 307 (628)
||++.|||.|.+|++++..|...|.+|.+++|..... ...+.++...+++++- ++|+|+.++|..-.....+..+.+.
T Consensus 118 ~k~vlvlGaGGaaraia~~L~~~G~~v~V~nRt~~ka~~la~~~~~~~~~~~l~-~~DiVInaTp~Gm~~~~~l~~~~l~ 196 (269)
T 3phh_A 118 YQNALILGAGGSAKALACELKKQGLQVSVLNRSSRGLDFFQRLGCDCFMEPPKS-AFDLIINATSASLHNELPLNKEVLK 196 (269)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTHHHHHHHTCEEESSCCSS-CCSEEEECCTTCCCCSCSSCHHHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCCCeEecHHHhc-cCCEEEEcccCCCCCCCCCChHHHH
Confidence 8999999999999999999999999999999986432 2225566555665543 8999999999764322345555333
Q ss_pred -cCCCCcEEEEcCCCchhcHHHHHHHHhCC
Q 006864 308 -KMKKGVRIVNVARGGVIDEEALVRALDSG 336 (628)
Q Consensus 308 -~mk~gailIN~aRg~~vde~aL~~aL~~g 336 (628)
.++++.+++|+.... ...-+.+|-+.|
T Consensus 197 ~~l~~~~~v~D~vY~P--~T~ll~~A~~~G 224 (269)
T 3phh_A 197 GYFKEGKLAYDLAYGF--LTPFLSLAKELK 224 (269)
T ss_dssp HHHHHCSEEEESCCSS--CCHHHHHHHHTT
T ss_pred hhCCCCCEEEEeCCCC--chHHHHHHHHCc
Confidence 567888888888765 444444444444
|
| >1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A* | Back alignment and structure |
|---|
Probab=97.92 E-value=7e-06 Score=85.92 Aligned_cols=93 Identities=19% Similarity=0.247 Sum_probs=69.7
Q ss_pred ceeeecCCeEEEEecChh-HHHHHHHHHcCCCEEEEECCCCCh--hHHHHcCC---cc--------cCHHHHhccCCEEE
Q 006864 223 VGVSLVGKTLAVMGFGKV-GSEVARRAKGLGMNVIAHDPYAPA--DKARAVGV---EL--------VSFDQALATADFIS 288 (628)
Q Consensus 223 ~g~~l~GktiGIIGlG~I-G~~vA~~l~~~G~~V~~~d~~~~~--~~a~~~g~---~~--------~sl~ell~~aDvV~ 288 (628)
.|.++.|+++.|||.|.| |+.+|+.|.+.|++|..+|+.... .++..++. .. .++.+.+++||+|+
T Consensus 171 ~g~~l~gk~vvVIG~G~iVG~~~A~~L~~~gAtVtv~nR~~~~l~~ra~~la~~~~~~t~~~~t~~~~L~e~l~~ADIVI 250 (320)
T 1edz_A 171 EGNRLYGKKCIVINRSEIVGRPLAALLANDGATVYSVDVNNIQKFTRGESLKLNKHHVEDLGEYSEDLLKKCSLDSDVVI 250 (320)
T ss_dssp TTCTTTTCEEEEECCCTTTHHHHHHHHHTTSCEEEEECSSEEEEEESCCCSSCCCCEEEEEEECCHHHHHHHHHHCSEEE
T ss_pred cCCCCCCCEEEEECCCcchHHHHHHHHHHCCCEEEEEeCchHHHHhHHHHHhhhcccccccccccHhHHHHHhccCCEEE
Confidence 577899999999999976 999999999999999999875211 11111111 11 35889999999999
Q ss_pred EcCCCCccccccccHHHHhcCCCCcEEEEcCCC
Q 006864 289 LHMPLNPTTSKIFNDETFAKMKKGVRIVNVARG 321 (628)
Q Consensus 289 l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg 321 (628)
.+++.. ..+|..+. +|+|+++||+|..
T Consensus 251 sAtg~p---~~vI~~e~---vk~GavVIDVgi~ 277 (320)
T 1edz_A 251 TGVPSE---NYKFPTEY---IKEGAVCINFACT 277 (320)
T ss_dssp ECCCCT---TCCBCTTT---SCTTEEEEECSSS
T ss_pred ECCCCC---cceeCHHH---cCCCeEEEEcCCC
Confidence 999842 22366655 4899999999854
|
| >1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A* | Back alignment and structure |
|---|
Probab=97.91 E-value=9.1e-06 Score=82.40 Aligned_cols=102 Identities=17% Similarity=0.137 Sum_probs=68.8
Q ss_pred CeEEEEecChhHHHHHHHHHcCCCEEEEECCCCCh-hHHHHc---CC----c-ccCHHHHhccCCEEEEcCCCCcccccc
Q 006864 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPA-DKARAV---GV----E-LVSFDQALATADFISLHMPLNPTTSKI 300 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~~---g~----~-~~sl~ell~~aDvV~l~~Plt~~t~~l 300 (628)
++|+|||+|.||..+|..|...|++|.+||+.... +..... +. . ..+..+.++.+|+|++++|-. .+...
T Consensus 1 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~v~~~-~~~~v 79 (291)
T 1ks9_A 1 MKITVLGCGALGQLWLTALCKQGHEVQGWLRVPQPYCSVNLVETDGSIFNESLTANDPDFLATSDLLLVTLKAW-QVSDA 79 (291)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSEEEEEEECTTSCEEEEEEEESCHHHHHTCSEEEECSCGG-GHHHH
T ss_pred CeEEEECcCHHHHHHHHHHHhCCCCEEEEEcCccceeeEEEEcCCCceeeeeeeecCccccCCCCEEEEEecHH-hHHHH
Confidence 47999999999999999999999999999987532 111111 11 0 123346778999999999954 34444
Q ss_pred ccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHh
Q 006864 301 FNDETFAKMKKGVRIVNVARGGVIDEEALVRALD 334 (628)
Q Consensus 301 i~~~~l~~mk~gailIN~aRg~~vde~aL~~aL~ 334 (628)
+ ++....+++++++|++..| +-..+.+.+.+.
T Consensus 80 ~-~~l~~~l~~~~~vv~~~~g-~~~~~~l~~~~~ 111 (291)
T 1ks9_A 80 V-KSLASTLPVTTPILLIHNG-MGTIEELQNIQQ 111 (291)
T ss_dssp H-HHHHTTSCTTSCEEEECSS-SCTTGGGTTCCS
T ss_pred H-HHHHhhCCCCCEEEEecCC-CCcHHHHHHhcC
Confidence 3 3445568889999998654 322234444443
|
| >2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=97.90 E-value=4.2e-06 Score=86.22 Aligned_cols=106 Identities=22% Similarity=0.203 Sum_probs=72.6
Q ss_pred CeEEEEecChhHHHHHHHHHcC-----C-CEEEEECCCCChhHHHH-cCCccc--------------CHHHHhccCCEEE
Q 006864 230 KTLAVMGFGKVGSEVARRAKGL-----G-MNVIAHDPYAPADKARA-VGVELV--------------SFDQALATADFIS 288 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~-----G-~~V~~~d~~~~~~~a~~-~g~~~~--------------sl~ell~~aDvV~ 288 (628)
++|+|||+|.||..+|..|... | .+|.+||+....+...+ .|+... +..+.+..+|+|+
T Consensus 9 m~I~iiG~G~mG~~~a~~L~~~~~~~~g~~~V~~~~r~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi 88 (317)
T 2qyt_A 9 IKIAVFGLGGVGGYYGAMLALRAAATDGLLEVSWIARGAHLEAIRAAGGLRVVTPSRDFLARPTCVTDNPAEVGTVDYIL 88 (317)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHHHTTSSEEEEEECCHHHHHHHHHHTSEEEECSSCEEEECCSEEESCHHHHCCEEEEE
T ss_pred CEEEEECcCHHHHHHHHHHHhCccccCCCCCEEEEEcHHHHHHHHhcCCeEEEeCCCCeEEecceEecCccccCCCCEEE
Confidence 4799999999999999999887 8 99999998212233334 454322 2335678999999
Q ss_pred EcCCCCccccccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhCCCe
Q 006864 289 LHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVV 338 (628)
Q Consensus 289 l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~~vde~aL~~aL~~g~i 338 (628)
+++|-.. +...+ +.....++++.+||++.-| +-.++.+.+.+...++
T Consensus 89 l~vk~~~-~~~v~-~~i~~~l~~~~~iv~~~nG-~~~~~~l~~~l~~~~v 135 (317)
T 2qyt_A 89 FCTKDYD-MERGV-AEIRPMIGQNTKILPLLNG-ADIAERMRTYLPDTVV 135 (317)
T ss_dssp ECCSSSC-HHHHH-HHHGGGEEEEEEEEECSCS-SSHHHHHTTTSCTTTB
T ss_pred EecCccc-HHHHH-HHHHhhcCCCCEEEEccCC-CCcHHHHHHHCCCCcE
Confidence 9999543 33333 2333456788999998765 3334666666655443
|
| >1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8 | Back alignment and structure |
|---|
Probab=97.89 E-value=1e-05 Score=74.50 Aligned_cols=101 Identities=17% Similarity=0.183 Sum_probs=74.5
Q ss_pred ecCCeEEEEec----ChhHHHHHHHHHcCCCEEEEECCCCChhHHHHcCCccc-CHHHHhccCCEEEEcCCCCccccccc
Q 006864 227 LVGKTLAVMGF----GKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELV-SFDQALATADFISLHMPLNPTTSKIF 301 (628)
Q Consensus 227 l~GktiGIIGl----G~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~-sl~ell~~aDvV~l~~Plt~~t~~li 301 (628)
++-++|+|||. |++|..+++.|+..|++|+.+||.... -.|+... +++|+.+..|++++++| .+....++
T Consensus 12 ~~p~~IavIGaS~~~g~~G~~~~~~L~~~G~~V~~vnp~~~~----i~G~~~~~s~~el~~~vDlvii~vp-~~~v~~v~ 86 (138)
T 1y81_A 12 KEFRKIALVGASKNPAKYGNIILKDLLSKGFEVLPVNPNYDE----IEGLKCYRSVRELPKDVDVIVFVVP-PKVGLQVA 86 (138)
T ss_dssp --CCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSE----ETTEECBSSGGGSCTTCCEEEECSC-HHHHHHHH
T ss_pred cCCCeEEEEeecCCCCCHHHHHHHHHHHCCCEEEEeCCCCCe----ECCeeecCCHHHhCCCCCEEEEEeC-HHHHHHHH
Confidence 35579999999 999999999999999999999987421 1466554 79999999999999999 45555555
Q ss_pred cHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhCCCe
Q 006864 302 NDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVV 338 (628)
Q Consensus 302 ~~~~l~~mk~gailIN~aRg~~vde~aL~~aL~~g~i 338 (628)
. +..+ +..++++++++. . .+.+.++.++..+
T Consensus 87 ~-~~~~-~g~~~i~~~~~~---~-~~~l~~~a~~~Gi 117 (138)
T 1y81_A 87 K-EAVE-AGFKKLWFQPGA---E-SEEIRRFLEKAGV 117 (138)
T ss_dssp H-HHHH-TTCCEEEECTTS---C-CHHHHHHHHHHTC
T ss_pred H-HHHH-cCCCEEEEcCcc---H-HHHHHHHHHHCCC
Confidence 3 3444 666777777743 2 4666676666544
|
| >1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.89 E-value=1e-05 Score=84.72 Aligned_cols=86 Identities=17% Similarity=0.280 Sum_probs=64.1
Q ss_pred CCeEEEEecChhHHHHHHHHHcCCCEEEEECCCCC-hhHHHHcC-----------Ccc-cCHHHHhccCCEEEEcCCCCc
Q 006864 229 GKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAP-ADKARAVG-----------VEL-VSFDQALATADFISLHMPLNP 295 (628)
Q Consensus 229 GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~g-----------~~~-~sl~ell~~aDvV~l~~Plt~ 295 (628)
-.+|+|||+|.||..+|.+|...|.+|.+||+... .+...+.| +.. .++++ ++.+|+|++++| ..
T Consensus 14 ~~kI~iIG~G~mG~ala~~L~~~G~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~-~~~aDvVil~vk-~~ 91 (335)
T 1z82_A 14 EMRFFVLGAGSWGTVFAQMLHENGEEVILWARRKEIVDLINVSHTSPYVEESKITVRATNDLEE-IKKEDILVIAIP-VQ 91 (335)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHSCBTTBTTCCCCSEEESCGGG-CCTTEEEEECSC-GG
T ss_pred CCcEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHhCCcccCCCCeeeEEEeCCHHH-hcCCCEEEEECC-HH
Confidence 36899999999999999999999999999998742 22223333 232 26778 899999999999 34
Q ss_pred cccccccHHHHhcCC-CCcEEEEcCCC
Q 006864 296 TTSKIFNDETFAKMK-KGVRIVNVARG 321 (628)
Q Consensus 296 ~t~~li~~~~l~~mk-~gailIN~aRg 321 (628)
.++..+ ..++ ++.++|++..|
T Consensus 92 ~~~~v~-----~~l~~~~~~vv~~~nG 113 (335)
T 1z82_A 92 YIREHL-----LRLPVKPSMVLNLSKG 113 (335)
T ss_dssp GHHHHH-----TTCSSCCSEEEECCCC
T ss_pred HHHHHH-----HHhCcCCCEEEEEeCC
Confidence 444333 3344 78999999876
|
| >3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A* | Back alignment and structure |
|---|
Probab=97.88 E-value=1.8e-05 Score=81.36 Aligned_cols=108 Identities=10% Similarity=0.172 Sum_probs=71.8
Q ss_pred eeecCCeEEEEecChhHHHHHHHHHcCCC-EEEEECCCCChhHHHHcCCccc---CHHHHhccCCEEEEcCCCC--cccc
Q 006864 225 VSLVGKTLAVMGFGKVGSEVARRAKGLGM-NVIAHDPYAPADKARAVGVELV---SFDQALATADFISLHMPLN--PTTS 298 (628)
Q Consensus 225 ~~l~GktiGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~~~~~a~~~g~~~~---sl~ell~~aDvV~l~~Plt--~~t~ 298 (628)
.++.||++.|+|.|.+|+.++..|...|+ +|.+++|...........+... ++.++++++|+|+.++|.. ++..
T Consensus 113 ~~l~~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~aDiVInaTp~Gm~~~~~ 192 (277)
T 3don_A 113 EGIEDAYILILGAGGASKGIANELYKIVRPTLTVANRTMSRFNNWSLNINKINLSHAESHLDEFDIIINTTPAGMNGNTD 192 (277)
T ss_dssp TTGGGCCEEEECCSHHHHHHHHHHHTTCCSCCEEECSCGGGGTTCCSCCEEECHHHHHHTGGGCSEEEECCC-------C
T ss_pred CCcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhcccccHhhHHHHhcCCCEEEECccCCCCCCCc
Confidence 35789999999999999999999999998 8999998753221111122222 4566788999999999964 3222
Q ss_pred ccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhCC
Q 006864 299 KIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSG 336 (628)
Q Consensus 299 ~li~~~~l~~mk~gailIN~aRg~~vde~aL~~aL~~g 336 (628)
..+. .+.++++.+++|+..... ...-+.+|-+.|
T Consensus 193 ~~l~---~~~l~~~~~V~D~vY~P~-~T~ll~~A~~~G 226 (277)
T 3don_A 193 SVIS---LNRLASHTLVSDIVYNPY-KTPILIEAEQRG 226 (277)
T ss_dssp CSSC---CTTCCSSCEEEESCCSSS-SCHHHHHHHHTT
T ss_pred CCCC---HHHcCCCCEEEEecCCCC-CCHHHHHHHHCc
Confidence 2232 455789999999986643 233333444444
|
| >1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=97.87 E-value=1.1e-05 Score=85.88 Aligned_cols=90 Identities=10% Similarity=0.149 Sum_probs=65.5
Q ss_pred CeEEEEecChhHHHHHHHHHcCC-------CEEEEECCCCC-----hh-HHHHc--------------CCcc-cCHHHHh
Q 006864 230 KTLAVMGFGKVGSEVARRAKGLG-------MNVIAHDPYAP-----AD-KARAV--------------GVEL-VSFDQAL 281 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~G-------~~V~~~d~~~~-----~~-~a~~~--------------g~~~-~sl~ell 281 (628)
++|+|||.|.||..+|..|...| .+|.+||+... .. ...+. ++.. .++++++
T Consensus 22 ~kI~iIGaG~mG~alA~~L~~~G~~~~~~~~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~ea~ 101 (375)
T 1yj8_A 22 LKISILGSGNWASAISKVVGTNAKNNYLFENEVRMWIRDEFVNGERMVDIINNKHENTKYLKGVPLPHNIVAHSDLASVI 101 (375)
T ss_dssp BCEEEECCSHHHHHHHHHHHHHHHHCTTBCSCEEEECCSCC---CCHHHHHHHHCBCTTTSTTCBCCTTEEEESSTHHHH
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCccCCCCCeEEEEECChhhhhHHHHHHHHhcCcccccCCcccCcCCeEEECCHHHHH
Confidence 47999999999999999998777 89999998754 22 12221 1222 2678889
Q ss_pred ccCCEEEEcCCCCccccccccHHHHh----cCCCCcEEEEcCCC
Q 006864 282 ATADFISLHMPLNPTTSKIFNDETFA----KMKKGVRIVNVARG 321 (628)
Q Consensus 282 ~~aDvV~l~~Plt~~t~~li~~~~l~----~mk~gailIN~aRg 321 (628)
++||+|++++|- ...+.++ .+... .+++++++|++..|
T Consensus 102 ~~aDvVilav~~-~~~~~vl-~~i~~~~~~~l~~~~ivvs~~~G 143 (375)
T 1yj8_A 102 NDADLLIFIVPC-QYLESVL-ASIKESESIKIASHAKAISLTKG 143 (375)
T ss_dssp TTCSEEEECCCH-HHHHHHH-HHHTC---CCCCTTCEEEECCCS
T ss_pred cCCCEEEEcCCH-HHHHHHH-HHHhhhhhccCCCCCEEEEeCCc
Confidence 999999999993 4444443 22333 57889999999876
|
| >2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus} | Back alignment and structure |
|---|
Probab=97.87 E-value=3.8e-05 Score=79.55 Aligned_cols=106 Identities=12% Similarity=0.172 Sum_probs=73.7
Q ss_pred eeecCCeEEEEecChhHHHHHHHHHcCCC-EEEEECCCCCh--hHHHHcCC---ccc---CHHHHhccCCEEEEcCCCCc
Q 006864 225 VSLVGKTLAVMGFGKVGSEVARRAKGLGM-NVIAHDPYAPA--DKARAVGV---ELV---SFDQALATADFISLHMPLNP 295 (628)
Q Consensus 225 ~~l~GktiGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~~~--~~a~~~g~---~~~---sl~ell~~aDvV~l~~Plt~ 295 (628)
.++.|++++|+|.|.+|+.++..|...|+ +|.++|+.... ..+...+. ... ++.+.+.++|+|+.++|...
T Consensus 137 ~~l~~~~vlVlGaGg~g~aia~~L~~~G~~~V~v~nR~~~ka~~la~~~~~~~~~~~~~~~~~~~~~~aDivIn~t~~~~ 216 (297)
T 2egg_A 137 ITLDGKRILVIGAGGGARGIYFSLLSTAAERIDMANRTVEKAERLVREGDERRSAYFSLAEAETRLAEYDIIINTTSVGM 216 (297)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHSCSSSCCEECHHHHHHTGGGCSEEEECSCTTC
T ss_pred CCCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhhhccCceeeHHHHHhhhccCCEEEECCCCCC
Confidence 35789999999999999999999999998 99999987422 22333333 233 45667889999999999764
Q ss_pred ccc--c-cccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhC
Q 006864 296 TTS--K-IFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDS 335 (628)
Q Consensus 296 ~t~--~-li~~~~l~~mk~gailIN~aRg~~vde~aL~~aL~~ 335 (628)
... . .+. .+.++++.+++|+.-.. .... |.+..++
T Consensus 217 ~~~~~~~~i~---~~~l~~~~~v~D~~y~P-~~T~-ll~~A~~ 254 (297)
T 2egg_A 217 HPRVEVQPLS---LERLRPGVIVSDIIYNP-LETK-WLKEAKA 254 (297)
T ss_dssp SSCCSCCSSC---CTTCCTTCEEEECCCSS-SSCH-HHHHHHH
T ss_pred CCCCCCCCCC---HHHcCCCCEEEEcCCCC-CCCH-HHHHHHH
Confidence 211 1 233 24578899999998743 2333 4444444
|
| >3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.86 E-value=8.5e-06 Score=77.54 Aligned_cols=95 Identities=14% Similarity=0.261 Sum_probs=65.7
Q ss_pred eeeecCCeEEEEecChhHHHHHHHHHcC-CCEEEEECCCCC-hhHHHHcCCccc-----C---HHHH--hccCCEEEEcC
Q 006864 224 GVSLVGKTLAVMGFGKVGSEVARRAKGL-GMNVIAHDPYAP-ADKARAVGVELV-----S---FDQA--LATADFISLHM 291 (628)
Q Consensus 224 g~~l~GktiGIIGlG~IG~~vA~~l~~~-G~~V~~~d~~~~-~~~a~~~g~~~~-----s---l~el--l~~aDvV~l~~ 291 (628)
+.++.+++++|+|+|.+|+.+|+.|+.. |++|+++|+... .+...+.|+..+ + +.++ +.++|+|++++
T Consensus 34 ~~~~~~~~v~IiG~G~~G~~~a~~L~~~~g~~V~vid~~~~~~~~~~~~g~~~~~gd~~~~~~l~~~~~~~~ad~vi~~~ 113 (183)
T 3c85_A 34 LINPGHAQVLILGMGRIGTGAYDELRARYGKISLGIEIREEAAQQHRSEGRNVISGDATDPDFWERILDTGHVKLVLLAM 113 (183)
T ss_dssp CBCCTTCSEEEECCSHHHHHHHHHHHHHHCSCEEEEESCHHHHHHHHHTTCCEEECCTTCHHHHHTBCSCCCCCEEEECC
T ss_pred CcCCCCCcEEEECCCHHHHHHHHHHHhccCCeEEEEECCHHHHHHHHHCCCCEEEcCCCCHHHHHhccCCCCCCEEEEeC
Confidence 3467789999999999999999999998 999999998752 233445565432 2 3444 67899999999
Q ss_pred CCCccccccccHHHHhcCCCCcEEEEcCC
Q 006864 292 PLNPTTSKIFNDETFAKMKKGVRIVNVAR 320 (628)
Q Consensus 292 Plt~~t~~li~~~~l~~mk~gailIN~aR 320 (628)
|-.+.+... ...+..+.+...++..+.
T Consensus 114 ~~~~~~~~~--~~~~~~~~~~~~ii~~~~ 140 (183)
T 3c85_A 114 PHHQGNQTA--LEQLQRRNYKGQIAAIAE 140 (183)
T ss_dssp SSHHHHHHH--HHHHHHTTCCSEEEEEES
T ss_pred CChHHHHHH--HHHHHHHCCCCEEEEEEC
Confidence 854333222 234555666666665443
|
| >3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum} | Back alignment and structure |
|---|
Probab=97.83 E-value=1.4e-05 Score=83.87 Aligned_cols=109 Identities=17% Similarity=0.192 Sum_probs=76.6
Q ss_pred CCeEEEEecChhHHHHHHHHHcCCCEEEEECCCCChhHHHHcCCcc--------------cCHHHHhccCCEEEEcCCCC
Q 006864 229 GKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVEL--------------VSFDQALATADFISLHMPLN 294 (628)
Q Consensus 229 GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~--------------~sl~ell~~aDvV~l~~Plt 294 (628)
.++|+|||.|.||..+|.+|...|.+|.+||+....+...+.|... .++++ +..+|+|++++|-
T Consensus 3 ~mkI~IiGaG~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~D~Vilavk~- 80 (335)
T 3ghy_A 3 LTRICIVGAGAVGGYLGARLALAGEAINVLARGATLQALQTAGLRLTEDGATHTLPVRATHDAAA-LGEQDVVIVAVKA- 80 (335)
T ss_dssp CCCEEEESCCHHHHHHHHHHHHTTCCEEEECCHHHHHHHHHTCEEEEETTEEEEECCEEESCHHH-HCCCSEEEECCCH-
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCEEEEEEChHHHHHHHHCCCEEecCCCeEEEeeeEECCHHH-cCCCCEEEEeCCc-
Confidence 4689999999999999999999999999999852223334445421 25666 5899999999994
Q ss_pred ccccccccHHHHhcCCCCcEEEEcCCCc------------------hhcHHHHHHHHhCCCeeE
Q 006864 295 PTTSKIFNDETFAKMKKGVRIVNVARGG------------------VIDEEALVRALDSGVVAQ 340 (628)
Q Consensus 295 ~~t~~li~~~~l~~mk~gailIN~aRg~------------------~vde~aL~~aL~~g~i~g 340 (628)
..++..+ +..-..++++++||.+.-|= +-.++.+.+.+...++.+
T Consensus 81 ~~~~~~~-~~l~~~l~~~~~iv~~~nGi~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~v~~ 143 (335)
T 3ghy_A 81 PALESVA-AGIAPLIGPGTCVVVAMNGVPWWFFDRPGPLQGQRLQAVDPHGRIAQAIPTRHVLG 143 (335)
T ss_dssp HHHHHHH-GGGSSSCCTTCEEEECCSSSCTTTTCSSSTTTTCCCTTTCTTSHHHHHSCGGGEEE
T ss_pred hhHHHHH-HHHHhhCCCCCEEEEECCCCccccccccccccccccccCCcHHHHHHhcCcccEEE
Confidence 3444333 22333467899999998882 234556777776666543
|
| >3hdj_A Probable ornithine cyclodeaminase; APC62486, bordetella pertussis TOH structural genomics, PSI-2, protein structure initiative; 1.70A {Bordetella pertussis} | Back alignment and structure |
|---|
Probab=97.81 E-value=7.5e-05 Score=78.03 Aligned_cols=88 Identities=20% Similarity=0.371 Sum_probs=67.3
Q ss_pred CCeEEEEecChhHHHHHHHHHc-CC-CEEEEECCCCChhHHHH----cCCc--ccCHHHHhccCCEEEEcCCCCcccccc
Q 006864 229 GKTLAVMGFGKVGSEVARRAKG-LG-MNVIAHDPYAPADKARA----VGVE--LVSFDQALATADFISLHMPLNPTTSKI 300 (628)
Q Consensus 229 GktiGIIGlG~IG~~vA~~l~~-~G-~~V~~~d~~~~~~~a~~----~g~~--~~sl~ell~~aDvV~l~~Plt~~t~~l 300 (628)
.++++|||.|.+|+.+++.+.. ++ -+|.+||+......+.+ .|+. .+++++++++||+|++|+|.. ..+
T Consensus 121 ~~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r~~a~~la~~l~~~~g~~~~~~~~~eav~~aDIVi~aT~s~---~pv 197 (313)
T 3hdj_A 121 SSVLGLFGAGTQGAEHAAQLSARFALEAILVHDPYASPEILERIGRRCGVPARMAAPADIAAQADIVVTATRST---TPL 197 (313)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECTTCCHHHHHHHHHHHTSCEEECCHHHHHHHCSEEEECCCCS---SCS
T ss_pred CcEEEEECccHHHHHHHHHHHHhCCCcEEEEECCcHHHHHHHHHHHhcCCeEEEeCHHHHHhhCCEEEEccCCC---Ccc
Confidence 5899999999999999999875 44 58999999832222222 3553 349999999999999999864 355
Q ss_pred ccHHHHhcCCCCcEEEEcCCCc
Q 006864 301 FNDETFAKMKKGVRIVNVARGG 322 (628)
Q Consensus 301 i~~~~l~~mk~gailIN~aRg~ 322 (628)
+.. +.+|+|+.+++++...
T Consensus 198 l~~---~~l~~G~~V~~vGs~~ 216 (313)
T 3hdj_A 198 FAG---QALRAGAFVGAIGSSL 216 (313)
T ss_dssp SCG---GGCCTTCEEEECCCSS
T ss_pred cCH---HHcCCCcEEEECCCCC
Confidence 553 3589999999998643
|
| >3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.76 E-value=3.8e-05 Score=77.88 Aligned_cols=100 Identities=17% Similarity=0.227 Sum_probs=74.1
Q ss_pred ecCCeEEEEecChhHHHHHHHHHcCCC-EEEEECCCCChhHHHHcCC-----cccCHHHHhccCCEEEEcCCCC--cccc
Q 006864 227 LVGKTLAVMGFGKVGSEVARRAKGLGM-NVIAHDPYAPADKARAVGV-----ELVSFDQALATADFISLHMPLN--PTTS 298 (628)
Q Consensus 227 l~GktiGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~~~~~a~~~g~-----~~~sl~ell~~aDvV~l~~Plt--~~t~ 298 (628)
+.| +++|||.|.+|++++..|...|. +|.++||.. ++++++-- ...++.+.++++|+|+.++|.. ++ .
T Consensus 107 ~~~-~vliiGaGg~a~ai~~~L~~~G~~~I~v~nR~~--~ka~~la~~~~~~~~~~~~~~~~~aDiVInatp~gm~p~-~ 182 (253)
T 3u62_A 107 VKE-PVVVVGAGGAARAVIYALLQMGVKDIWVVNRTI--ERAKALDFPVKIFSLDQLDEVVKKAKSLFNTTSVGMKGE-E 182 (253)
T ss_dssp CCS-SEEEECCSHHHHHHHHHHHHTTCCCEEEEESCH--HHHHTCCSSCEEEEGGGHHHHHHTCSEEEECSSTTTTSC-C
T ss_pred CCC-eEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCH--HHHHHHHHHcccCCHHHHHhhhcCCCEEEECCCCCCCCC-C
Confidence 578 99999999999999999999998 899999864 33333211 2336778899999999999964 32 2
Q ss_pred ccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhCC
Q 006864 299 KIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSG 336 (628)
Q Consensus 299 ~li~~~~l~~mk~gailIN~aRg~~vde~aL~~aL~~g 336 (628)
..+..+. ++++.+++|+.-+ ...-|.++.+.|
T Consensus 183 ~~i~~~~---l~~~~~V~Divy~---~T~ll~~A~~~G 214 (253)
T 3u62_A 183 LPVSDDS---LKNLSLVYDVIYF---DTPLVVKARKLG 214 (253)
T ss_dssp CSCCHHH---HTTCSEEEECSSS---CCHHHHHHHHHT
T ss_pred CCCCHHH---hCcCCEEEEeeCC---CcHHHHHHHHCC
Confidence 2344333 5789999999988 555555666555
|
| >3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus} | Back alignment and structure |
|---|
Probab=97.75 E-value=7.5e-05 Score=77.74 Aligned_cols=107 Identities=17% Similarity=0.145 Sum_probs=76.5
Q ss_pred CeEEEEecChhHHHHHHHHHcCCCEEEEECCCCChhHHHHcCCc---------------c-cCHHHHhccCCEEEEcCCC
Q 006864 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVE---------------L-VSFDQALATADFISLHMPL 293 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~---------------~-~sl~ell~~aDvV~l~~Pl 293 (628)
++|+|||.|.||..+|..|...|.+|.+|++.. .+..++.|+. . .+++++.+.+|+|++++|-
T Consensus 3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~-~~~i~~~Gl~~~~~~~g~~~~~~~~~~~~~~~~~~~~DlVilavK~ 81 (320)
T 3i83_A 3 LNILVIGTGAIGSFYGALLAKTGHCVSVVSRSD-YETVKAKGIRIRSATLGDYTFRPAAVVRSAAELETKPDCTLLCIKV 81 (320)
T ss_dssp CEEEEESCCHHHHHHHHHHHHTTCEEEEECSTT-HHHHHHHCEEEEETTTCCEEECCSCEESCGGGCSSCCSEEEECCCC
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCh-HHHHHhCCcEEeecCCCcEEEeeeeeECCHHHcCCCCCEEEEecCC
Confidence 589999999999999999999999999999875 3333333321 1 2466666689999999995
Q ss_pred CccccccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhCCCeeE
Q 006864 294 NPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQ 340 (628)
Q Consensus 294 t~~t~~li~~~~l~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~g 340 (628)
.. +...+ +..-..++++..||.+.-| +-.++.+.+.+...++.+
T Consensus 82 ~~-~~~~l-~~l~~~l~~~t~Iv~~~nG-i~~~~~l~~~~~~~~vl~ 125 (320)
T 3i83_A 82 VE-GADRV-GLLRDAVAPDTGIVLISNG-IDIEPEVAAAFPDNEVIS 125 (320)
T ss_dssp CT-TCCHH-HHHTTSCCTTCEEEEECSS-SSCSHHHHHHSTTSCEEE
T ss_pred CC-hHHHH-HHHHhhcCCCCEEEEeCCC-CChHHHHHHHCCCCcEEE
Confidence 54 44433 3334457888999988755 334577777776655543
|
| >2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A* | Back alignment and structure |
|---|
Probab=97.75 E-value=4e-05 Score=71.04 Aligned_cols=99 Identities=17% Similarity=0.186 Sum_probs=61.9
Q ss_pred cceeeecCCeEEEEecChhHHHHHHHHHcCCCEEEEECCCCCh-hHHH-HcCCccc-----C---HHHH-hccCCEEEEc
Q 006864 222 YVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPA-DKAR-AVGVELV-----S---FDQA-LATADFISLH 290 (628)
Q Consensus 222 ~~g~~l~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~-~~g~~~~-----s---l~el-l~~aDvV~l~ 290 (628)
.+.....++++.|+|+|.+|+.+|+.|+..|.+|+++|+.... +... ..|+..+ + +.+. +..+|+|+++
T Consensus 12 ~~~~~~~~~~v~IiG~G~iG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~g~~~~~~d~~~~~~l~~~~~~~ad~Vi~~ 91 (155)
T 2g1u_A 12 HMSKKQKSKYIVIFGCGRLGSLIANLASSSGHSVVVVDKNEYAFHRLNSEFSGFTVVGDAAEFETLKECGMEKADMVFAF 91 (155)
T ss_dssp -----CCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGGGGGGSCTTCCSEEEESCTTSHHHHHTTTGGGCSEEEEC
T ss_pred hhhcccCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHhcCCCcEEEecCCCHHHHHHcCcccCCEEEEE
Confidence 3556778899999999999999999999999999999986422 2222 3444322 2 3333 6789999999
Q ss_pred CCCCccccccccHHHHhcCCCCcEEEEcCCCc
Q 006864 291 MPLNPTTSKIFNDETFAKMKKGVRIVNVARGG 322 (628)
Q Consensus 291 ~Plt~~t~~li~~~~l~~mk~gailIN~aRg~ 322 (628)
+|.... . ..-......+.+...++-..++.
T Consensus 92 ~~~~~~-~-~~~~~~~~~~~~~~~iv~~~~~~ 121 (155)
T 2g1u_A 92 TNDDST-N-FFISMNARYMFNVENVIARVYDP 121 (155)
T ss_dssp SSCHHH-H-HHHHHHHHHTSCCSEEEEECSSG
T ss_pred eCCcHH-H-HHHHHHHHHHCCCCeEEEEECCH
Confidence 984322 1 11122334445555666555544
|
| >2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae} | Back alignment and structure |
|---|
Probab=97.73 E-value=1.6e-05 Score=73.75 Aligned_cols=102 Identities=13% Similarity=0.181 Sum_probs=74.8
Q ss_pred CCeEEEEec----ChhHHHHHHHHHcCCCEEEEECCCCChhHHHHcCCccc-CHHHHhccCCEEEEcCCCCccccccccH
Q 006864 229 GKTLAVMGF----GKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELV-SFDQALATADFISLHMPLNPTTSKIFND 303 (628)
Q Consensus 229 GktiGIIGl----G~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~-sl~ell~~aDvV~l~~Plt~~t~~li~~ 303 (628)
-++|+|||+ |++|..+++.|+..|++|+.+||....+ .-.|+... +++++....|++++++| .+....++.
T Consensus 13 p~~IavIGas~~~g~~G~~~~~~L~~~G~~v~~vnp~~~g~--~i~G~~~~~sl~el~~~~Dlvii~vp-~~~v~~v~~- 88 (145)
T 2duw_A 13 TRTIALVGASDKPDRPSYRVMKYLLDQGYHVIPVSPKVAGK--TLLGQQGYATLADVPEKVDMVDVFRN-SEAAWGVAQ- 88 (145)
T ss_dssp CCCEEEESCCSCTTSHHHHHHHHHHHHTCCEEEECSSSTTS--EETTEECCSSTTTCSSCCSEEECCSC-STHHHHHHH-
T ss_pred CCEEEEECcCCCCCChHHHHHHHHHHCCCEEEEeCCccccc--ccCCeeccCCHHHcCCCCCEEEEEeC-HHHHHHHHH-
Confidence 478999999 8999999999999999999999875101 11466554 78898889999999999 455555553
Q ss_pred HHHhcCCCCcEEEEcCCCchhcHHHHHHHHhCCCee
Q 006864 304 ETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVA 339 (628)
Q Consensus 304 ~~l~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~ 339 (628)
+..+ ...+.++++.+ .. ++.+.+++++..+.
T Consensus 89 ~~~~-~g~~~i~i~~~--~~--~~~l~~~a~~~Gi~ 119 (145)
T 2duw_A 89 EAIA-IGAKTLWLQLG--VI--NEQAAVLAREAGLS 119 (145)
T ss_dssp HHHH-HTCCEEECCTT--CC--CHHHHHHHHTTTCE
T ss_pred HHHH-cCCCEEEEcCC--hH--HHHHHHHHHHcCCE
Confidence 3333 56677777753 22 66777777776553
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=97.64 E-value=5e-05 Score=69.33 Aligned_cols=89 Identities=20% Similarity=0.347 Sum_probs=61.5
Q ss_pred CeEEEEecChhHHHHHHHHHcCCCEEEEECCCCC-hhHHHHcCCccc-----C---HHHH-hccCCEEEEcCCCCccccc
Q 006864 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAP-ADKARAVGVELV-----S---FDQA-LATADFISLHMPLNPTTSK 299 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~g~~~~-----s---l~el-l~~aDvV~l~~Plt~~t~~ 299 (628)
+++.|+|+|++|+.+|+.|+..|++|+++|+... .+...+.|+..+ + |+++ +.++|+|++++|-..++..
T Consensus 8 ~~viIiG~G~~G~~la~~L~~~g~~v~vid~~~~~~~~~~~~g~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~~~~n~~ 87 (140)
T 3fwz_A 8 NHALLVGYGRVGSLLGEKLLASDIPLVVIETSRTRVDELRERGVRAVLGNAANEEIMQLAHLECAKWLILTIPNGYEAGE 87 (140)
T ss_dssp SCEEEECCSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHTTCEEEESCTTSHHHHHHTTGGGCSEEEECCSCHHHHHH
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHcCCCEEECCCCCHHHHHhcCcccCCEEEEECCChHHHHH
Confidence 5799999999999999999999999999998752 233445566432 2 2222 5689999999995544332
Q ss_pred cccHHHHhcCCCCcEEEEcCC
Q 006864 300 IFNDETFAKMKKGVRIVNVAR 320 (628)
Q Consensus 300 li~~~~l~~mk~gailIN~aR 320 (628)
+ ...+..+.++..+|--++
T Consensus 88 ~--~~~a~~~~~~~~iiar~~ 106 (140)
T 3fwz_A 88 I--VASARAKNPDIEIIARAH 106 (140)
T ss_dssp H--HHHHHHHCSSSEEEEEES
T ss_pred H--HHHHHHHCCCCeEEEEEC
Confidence 2 234455666666665443
|
| >2i76_A Hypothetical protein; NADP, dehydrogenase, TM1727, structural genomics, PSI-2, protein structure initiative; HET: NDP; 3.00A {Thermotoga maritima} SCOP: a.100.1.10 c.2.1.6 | Back alignment and structure |
|---|
Probab=97.64 E-value=7.8e-06 Score=83.42 Aligned_cols=85 Identities=8% Similarity=0.040 Sum_probs=55.1
Q ss_pred CeEEEEecChhHHHHHHHHHcCCCEE-EEECCCCCh-hHH-HHcCCcccCHHHHhccCCEEEEcCCCCccccccccHHHH
Q 006864 230 KTLAVMGFGKVGSEVARRAKGLGMNV-IAHDPYAPA-DKA-RAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETF 306 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~G~~V-~~~d~~~~~-~~a-~~~g~~~~sl~ell~~aDvV~l~~Plt~~t~~li~~~~l 306 (628)
++|||||+|+||+.+|+.|... ++| .+||+.... +.. ...+....++++++++||+|++++|-.. . .+.+
T Consensus 3 m~I~iIG~G~mG~~la~~l~~~-~~v~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~DvVilav~~~~-~-----~~v~ 75 (276)
T 2i76_A 3 LVLNFVGTGTLTRFFLECLKDR-YEIGYILSRSIDRARNLAEVYGGKAATLEKHPELNGVVFVIVPDRY-I-----KTVA 75 (276)
T ss_dssp -CCEEESCCHHHHHHHHTTC-----CCCEECSSHHHHHHHHHHTCCCCCSSCCCCC---CEEECSCTTT-H-----HHHH
T ss_pred ceEEEEeCCHHHHHHHHHHHHc-CcEEEEEeCCHHHHHHHHHHcCCccCCHHHHHhcCCEEEEeCChHH-H-----HHHH
Confidence 4799999999999999999877 888 489987422 222 2345522367788899999999999542 2 3334
Q ss_pred hcC-CCCcEEEEcCCC
Q 006864 307 AKM-KKGVRIVNVARG 321 (628)
Q Consensus 307 ~~m-k~gailIN~aRg 321 (628)
..+ +++.+|||++-+
T Consensus 76 ~~l~~~~~ivi~~s~~ 91 (276)
T 2i76_A 76 NHLNLGDAVLVHCSGF 91 (276)
T ss_dssp TTTCCSSCCEEECCSS
T ss_pred HHhccCCCEEEECCCC
Confidence 444 688999999844
|
| >3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=97.63 E-value=0.00016 Score=74.87 Aligned_cols=107 Identities=15% Similarity=0.186 Sum_probs=75.6
Q ss_pred CeEEEEecChhHHHHHHHHHcCCCEEEEECCCCChhHHHHcCCc--------------c-cCHHHHhccCCEEEEcCCCC
Q 006864 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVE--------------L-VSFDQALATADFISLHMPLN 294 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~--------------~-~sl~ell~~aDvV~l~~Plt 294 (628)
++|+|||.|.||..+|..|...|.+|.+|++.. .+...+.|+. . .+.++ +..+|+|++++|-.
T Consensus 3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~-~~~i~~~g~~~~~~~g~~~~~~~~~~~~~~~-~~~~D~vilavk~~ 80 (312)
T 3hn2_A 3 LRIAIVGAGALGLYYGALLQRSGEDVHFLLRRD-YEAIAGNGLKVFSINGDFTLPHVKGYRAPEE-IGPMDLVLVGLKTF 80 (312)
T ss_dssp -CEEEECCSTTHHHHHHHHHHTSCCEEEECSTT-HHHHHHTCEEEEETTCCEEESCCCEESCHHH-HCCCSEEEECCCGG
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCeEEEEEcCc-HHHHHhCCCEEEcCCCeEEEeeceeecCHHH-cCCCCEEEEecCCC
Confidence 589999999999999999999999999999875 3444444431 1 14444 68999999999944
Q ss_pred ccccccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhCCCeeEE
Q 006864 295 PTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQA 341 (628)
Q Consensus 295 ~~t~~li~~~~l~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~ga 341 (628)
. ++..+ +..-..++++++||.+.-| +-.++.+.+.+...++.++
T Consensus 81 ~-~~~~l-~~l~~~l~~~~~iv~l~nG-i~~~~~l~~~~~~~~v~~~ 124 (312)
T 3hn2_A 81 A-NSRYE-ELIRPLVEEGTQILTLQNG-LGNEEALATLFGAERIIGG 124 (312)
T ss_dssp G-GGGHH-HHHGGGCCTTCEEEECCSS-SSHHHHHHHHTCGGGEEEE
T ss_pred C-cHHHH-HHHHhhcCCCCEEEEecCC-CCcHHHHHHHCCCCcEEEE
Confidence 3 34333 3333457889999998765 3346677777766665543
|
| >2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A | Back alignment and structure |
|---|
Probab=97.61 E-value=6.8e-05 Score=62.49 Aligned_cols=65 Identities=12% Similarity=0.121 Sum_probs=50.7
Q ss_pred EEEeccCCCCchhhHHhhhhcCCccccceEEeeeecCccEEEEEEeCCC---CCHHHHHHHhcccCcccc
Q 006864 561 ILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDEE---PNQDSLKEIGKVHFVARI 627 (628)
Q Consensus 561 Llv~~~D~PGvIa~V~~iL~~~~INIa~m~v~R~~~gg~Al~~i~vD~~---~~~~~l~~L~~l~~v~~v 627 (628)
|-+...|+||+++.|+++|+++|+||.++...+.. + .+.+.+.++-. .-++++++|+++++|.++
T Consensus 8 l~v~~~Dr~G~L~~I~~~la~~~inI~~i~~~~~~-~-~~~~~i~v~~~~~~~l~~l~~~L~~~~~V~~v 75 (88)
T 2ko1_A 8 IRIVGEDKNGMTNQITGVISKFDTNIRTIVLNAKD-G-IFTCNLMIFVKNTDKLTTLMDKLRKVQGVFTV 75 (88)
T ss_dssp EEEEEECCTTHHHHHHHHHTTSSSCEEEEEEEECS-S-EEEEEEEEEESSHHHHHHHHHHHTTCTTEEEE
T ss_pred EEEEEECCCcHHHHHHHHHHHCCCCeEEEEEEEcC-C-EEEEEEEEEECCHHHHHHHHHHHhcCCCceEE
Confidence 44567899999999999999999999999997643 2 66666554422 234789999999998765
|
| >1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=97.61 E-value=0.00013 Score=65.14 Aligned_cols=88 Identities=16% Similarity=0.239 Sum_probs=57.3
Q ss_pred CCeEEEEecChhHHHHHHHHHcCCCEEEEECCCCCh-hHHH-HcCCccc-----CHHH---H-hccCCEEEEcCCCCccc
Q 006864 229 GKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPA-DKAR-AVGVELV-----SFDQ---A-LATADFISLHMPLNPTT 297 (628)
Q Consensus 229 GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~-~~g~~~~-----sl~e---l-l~~aDvV~l~~Plt~~t 297 (628)
+++++|+|+|.+|+.+|+.|...|.+|.++|+.... +... ..++... +.+. . +.++|+|++++|....
T Consensus 4 ~m~i~IiG~G~iG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~d~vi~~~~~~~~- 82 (140)
T 1lss_A 4 GMYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEIDALVINGDCTKIKTLEDAGIEDADMYIAVTGKEEV- 82 (140)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCSSEEEESCTTSHHHHHHTTTTTCSEEEECCSCHHH-
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHhcCcEEEEcCCCCHHHHHHcCcccCCEEEEeeCCchH-
Confidence 578999999999999999999999999999986422 2222 2354321 2222 2 6789999999984322
Q ss_pred cccccHHHHhcCCCCcEEEEc
Q 006864 298 SKIFNDETFAKMKKGVRIVNV 318 (628)
Q Consensus 298 ~~li~~~~l~~mk~gailIN~ 318 (628)
+..-......++++.+++-+
T Consensus 83 -~~~~~~~~~~~~~~~ii~~~ 102 (140)
T 1lss_A 83 -NLMSSLLAKSYGINKTIARI 102 (140)
T ss_dssp -HHHHHHHHHHTTCCCEEEEC
T ss_pred -HHHHHHHHHHcCCCEEEEEe
Confidence 12222344456666665544
|
| >3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi} | Back alignment and structure |
|---|
Probab=97.59 E-value=0.00012 Score=63.48 Aligned_cols=98 Identities=22% Similarity=0.231 Sum_probs=64.1
Q ss_pred cCCeEEEEecChhHHHHHHHHHcCC-CEEEEECCCCCh-hHHHHcCCcc--------cCHHHHhccCCEEEEcCCCCccc
Q 006864 228 VGKTLAVMGFGKVGSEVARRAKGLG-MNVIAHDPYAPA-DKARAVGVEL--------VSFDQALATADFISLHMPLNPTT 297 (628)
Q Consensus 228 ~GktiGIIGlG~IG~~vA~~l~~~G-~~V~~~d~~~~~-~~a~~~g~~~--------~sl~ell~~aDvV~l~~Plt~~t 297 (628)
.+++++|+|.|.||+.+++.|...| .+|+++|+.... +.....++.. .++.++++++|+|+.++|... +
T Consensus 4 ~~~~v~I~G~G~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~d~vi~~~~~~~-~ 82 (118)
T 3ic5_A 4 MRWNICVVGAGKIGQMIAALLKTSSNYSVTVADHDLAALAVLNRMGVATKQVDAKDEAGLAKALGGFDAVISAAPFFL-T 82 (118)
T ss_dssp TCEEEEEECCSHHHHHHHHHHHHCSSEEEEEEESCHHHHHHHHTTTCEEEECCTTCHHHHHHHTTTCSEEEECSCGGG-H
T ss_pred CcCeEEEECCCHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhCCCcEEEecCCCHHHHHHHHcCCCEEEECCCchh-h
Confidence 3578999999999999999999999 899999986422 2222334322 135677889999999997432 1
Q ss_pred cccccHHHHhcCCCCcEEEEcCCCchhcHHHHHH
Q 006864 298 SKIFNDETFAKMKKGVRIVNVARGGVIDEEALVR 331 (628)
Q Consensus 298 ~~li~~~~l~~mk~gailIN~aRg~~vde~aL~~ 331 (628)
..++ -...+.|...++.+ +.+-..+.+.+
T Consensus 83 ~~~~----~~~~~~g~~~~~~~-~~~~~~~~~~~ 111 (118)
T 3ic5_A 83 PIIA----KAAKAAGAHYFDLT-EDVAATNAVRA 111 (118)
T ss_dssp HHHH----HHHHHTTCEEECCC-SCHHHHHHHHH
T ss_pred HHHH----HHHHHhCCCEEEec-CcHHHHHHHHH
Confidence 1111 11235677777765 33333444433
|
| >3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A* | Back alignment and structure |
|---|
Probab=97.59 E-value=0.00022 Score=74.67 Aligned_cols=130 Identities=15% Similarity=0.097 Sum_probs=88.9
Q ss_pred CCeEEEEecChhHHHHHHHHHcCCCEEEEECCCCCh-hHH-----------HHcCC--------------c-ccCHHHHh
Q 006864 229 GKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPA-DKA-----------RAVGV--------------E-LVSFDQAL 281 (628)
Q Consensus 229 GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a-----------~~~g~--------------~-~~sl~ell 281 (628)
-++|+|||.|.||+.+|..+...|++|+.||+.... +.+ .+.|. . ..++++.+
T Consensus 6 ~~~VaViGaG~MG~giA~~~a~~G~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~l~~i~~~~~l~~a~ 85 (319)
T 3ado_A 6 AGDVLIVGSGLVGRSWAMLFASGGFRVKLYDIEPRQITGALENIRKEMKSLQQSGSLKGSLSAEEQLSLISSCTNLAEAV 85 (319)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHTTCCCSSSCHHHHHHTEEEECCHHHHT
T ss_pred CCeEEEECCcHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCCccCHHHHHhhcccccchHhHh
Confidence 468999999999999999999999999999986421 110 11110 1 13688999
Q ss_pred ccCCEEEEcCCCCccccccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhCC-CeeEEEeeccCCCCCCCCCccccC
Q 006864 282 ATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSG-VVAQAALDVFTEEPPAKDSKLVQH 360 (628)
Q Consensus 282 ~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~~vde~aL~~aL~~g-~i~ga~lDV~~~EP~~~~~~L~~~ 360 (628)
+.||+|+=++|-+-+.+.-+-++.=+.++++++|-...++ +.-..|.+.++.. ++ .++..|.+-|. -||.+
T Consensus 86 ~~ad~ViEav~E~l~iK~~lf~~l~~~~~~~aIlaSNTSs--l~is~ia~~~~~p~r~--ig~HffNP~~~---m~LVE- 157 (319)
T 3ado_A 86 EGVVHIQECVPENLDLKRKIFAQLDSIVDDRVVLSSSSSC--LLPSKLFTGLAHVKQC--IVAHPVNPPYY---IPLVE- 157 (319)
T ss_dssp TTEEEEEECCCSCHHHHHHHHHHHHTTCCSSSEEEECCSS--CCHHHHHTTCTTGGGE--EEEEECSSTTT---CCEEE-
T ss_pred ccCcEEeeccccHHHHHHHHHHHHHHHhhhcceeehhhhh--ccchhhhhhccCCCcE--EEecCCCCccc---cchHH-
Confidence 9999999999987777766656666668999998766555 3445566666542 55 44555554332 34544
Q ss_pred CcEEEcCC
Q 006864 361 ENVTVTPH 368 (628)
Q Consensus 361 ~nvilTPH 368 (628)
||-+|+
T Consensus 158 --iv~g~~ 163 (319)
T 3ado_A 158 --LVPHPE 163 (319)
T ss_dssp --EEECTT
T ss_pred --hcCCCC
Confidence 555554
|
| >1x7d_A Ornithine cyclodeaminase; binds NAD+, binds L-ornithine, binds L-proline, 2 bundle, beta barrel, rossmann fold, lyase; HET: NAD ORN MES; 1.60A {Pseudomonas putida} SCOP: c.2.1.13 PDB: 1u7h_A* | Back alignment and structure |
|---|
Probab=97.55 E-value=0.00018 Score=76.31 Aligned_cols=90 Identities=19% Similarity=0.232 Sum_probs=65.8
Q ss_pred cCCeEEEEecChhHHHHHHHHH-cCC-CEEEEECCCCCh-h-HHHHc----CC--c-ccCHHHHhccCCEEEEcCCCCcc
Q 006864 228 VGKTLAVMGFGKVGSEVARRAK-GLG-MNVIAHDPYAPA-D-KARAV----GV--E-LVSFDQALATADFISLHMPLNPT 296 (628)
Q Consensus 228 ~GktiGIIGlG~IG~~vA~~l~-~~G-~~V~~~d~~~~~-~-~a~~~----g~--~-~~sl~ell~~aDvV~l~~Plt~~ 296 (628)
.++++||||.|.+|+.+++.+. .++ .+|.+||+.... + .+..+ |+ . ..++++++++||+|++|+|...
T Consensus 128 ~~~~v~iIGaG~~a~~~a~al~~~~~~~~V~V~~r~~~~a~~la~~~~~~~g~~~~~~~~~~eav~~aDiVi~aTps~~- 206 (350)
T 1x7d_A 128 NARKMALIGNGAQSEFQALAFHKHLGIEEIVAYDTDPLATAKLIANLKEYSGLTIRRASSVAEAVKGVDIITTVTADKA- 206 (350)
T ss_dssp TCCEEEEECCSTTHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHTTCTTCEEEECSSHHHHHTTCSEEEECCCCSS-
T ss_pred cCCeEEEECCcHHHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHhccCceEEEeCCHHHHHhcCCEEEEeccCCC-
Confidence 4579999999999999998875 344 589999987522 2 22222 43 2 2379999999999999999652
Q ss_pred ccccccHHHHhcCCCCcEEEEcCCC
Q 006864 297 TSKIFNDETFAKMKKGVRIVNVARG 321 (628)
Q Consensus 297 t~~li~~~~l~~mk~gailIN~aRg 321 (628)
...++.. +.+++|..+++++..
T Consensus 207 ~~pvl~~---~~l~~G~~V~~vgs~ 228 (350)
T 1x7d_A 207 YATIITP---DMLEPGMHLNAVGGD 228 (350)
T ss_dssp EEEEECG---GGCCTTCEEEECSCC
T ss_pred CCceecH---HHcCCCCEEEECCCC
Confidence 2345543 457999999999864
|
| >3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=97.48 E-value=0.00013 Score=66.12 Aligned_cols=65 Identities=17% Similarity=0.204 Sum_probs=48.0
Q ss_pred cCCeEEEEecChhHHHHHHHHHcCCCEEEEECCCCC-hhHHHHcCCccc-----C---HHHH-hccCCEEEEcCC
Q 006864 228 VGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAP-ADKARAVGVELV-----S---FDQA-LATADFISLHMP 292 (628)
Q Consensus 228 ~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~g~~~~-----s---l~el-l~~aDvV~l~~P 292 (628)
.++++.|+|+|.+|+.+|+.|...|++|+++|+... .+...+.++..+ + ++++ +.++|+|++++|
T Consensus 5 ~~~~v~I~G~G~iG~~la~~L~~~g~~V~~id~~~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~~d~vi~~~~ 79 (141)
T 3llv_A 5 GRYEYIVIGSEAAGVGLVRELTAAGKKVLAVDKSKEKIELLEDEGFDAVIADPTDESFYRSLDLEGVSAVLITGS 79 (141)
T ss_dssp -CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHTTCEEEECCTTCHHHHHHSCCTTCSEEEECCS
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHCCCcEEECCCCCHHHHHhCCcccCCEEEEecC
Confidence 357899999999999999999999999999998642 223344455321 2 2222 467999999998
|
| >3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B* | Back alignment and structure |
|---|
Probab=97.44 E-value=8.8e-05 Score=76.33 Aligned_cols=96 Identities=16% Similarity=0.140 Sum_probs=66.2
Q ss_pred eeeecCCeEEEEecChhHHHHHHHHHcCCC-EEEEECCCCCh--hHHHHcC----CcccCHHHHhccCCEEEEcCCCCcc
Q 006864 224 GVSLVGKTLAVMGFGKVGSEVARRAKGLGM-NVIAHDPYAPA--DKARAVG----VELVSFDQALATADFISLHMPLNPT 296 (628)
Q Consensus 224 g~~l~GktiGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~~~--~~a~~~g----~~~~sl~ell~~aDvV~l~~Plt~~ 296 (628)
+.++.||++.|+|.|.+|+.++..|...|+ +|.++++.... ..+...+ +...+++++..++|+|+.++|..-.
T Consensus 121 ~~~l~~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~~~a~~la~~~~~~~~~~~~~~~~l~~~aDiIInaTp~gm~ 200 (281)
T 3o8q_A 121 QVLLKGATILLIGAGGAARGVLKPLLDQQPASITVTNRTFAKAEQLAELVAAYGEVKAQAFEQLKQSYDVIINSTSASLD 200 (281)
T ss_dssp TCCCTTCEEEEECCSHHHHHHHHHHHTTCCSEEEEEESSHHHHHHHHHHHGGGSCEEEEEGGGCCSCEEEEEECSCCCC-
T ss_pred CCCccCCEEEEECchHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhccCCeeEeeHHHhcCCCCEEEEcCcCCCC
Confidence 346889999999999999999999999996 99999987422 1222222 3344677776899999999996532
Q ss_pred cc-ccccHHHHhcCCCCcEEEEcCCCc
Q 006864 297 TS-KIFNDETFAKMKKGVRIVNVARGG 322 (628)
Q Consensus 297 t~-~li~~~~l~~mk~gailIN~aRg~ 322 (628)
.. ..+.. +.++++.+++|+.-..
T Consensus 201 ~~~~~l~~---~~l~~~~~V~DlvY~P 224 (281)
T 3o8q_A 201 GELPAIDP---VIFSSRSVCYDMMYGK 224 (281)
T ss_dssp ---CSCCG---GGEEEEEEEEESCCCS
T ss_pred CCCCCCCH---HHhCcCCEEEEecCCC
Confidence 11 12322 3356677777776543
|
| >3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=97.43 E-value=0.00017 Score=75.07 Aligned_cols=107 Identities=21% Similarity=0.249 Sum_probs=71.2
Q ss_pred ecCCeEEEEecChhHHHHHHHHHcCCCEEEEECCCC-ChhHHHHcCCc-------------c-cCHHHHhccCCEEEEcC
Q 006864 227 LVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA-PADKARAVGVE-------------L-VSFDQALATADFISLHM 291 (628)
Q Consensus 227 l~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~g~~-------------~-~sl~ell~~aDvV~l~~ 291 (628)
...++|+|||.|.||..+|..|...|.+|..| ++. ..+...+.|.. . .++++ +..+|+|++++
T Consensus 17 ~~~~kI~IiGaGa~G~~~a~~L~~~G~~V~l~-~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~D~vilav 94 (318)
T 3hwr_A 17 FQGMKVAIMGAGAVGCYYGGMLARAGHEVILI-ARPQHVQAIEATGLRLETQSFDEQVKVSASSDPSA-VQGADLVLFCV 94 (318)
T ss_dssp ---CEEEEESCSHHHHHHHHHHHHTTCEEEEE-CCHHHHHHHHHHCEEEECSSCEEEECCEEESCGGG-GTTCSEEEECC
T ss_pred ccCCcEEEECcCHHHHHHHHHHHHCCCeEEEE-EcHhHHHHHHhCCeEEEcCCCcEEEeeeeeCCHHH-cCCCCEEEEEc
Confidence 34579999999999999999999999999999 553 22333333321 1 23444 58999999999
Q ss_pred CCCccccccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhCCCee
Q 006864 292 PLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVA 339 (628)
Q Consensus 292 Plt~~t~~li~~~~l~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~ 339 (628)
|-. .++..+ +..-..+++++++|.+.-| +-.++.+.+.+. .++.
T Consensus 95 k~~-~~~~~l-~~l~~~l~~~~~iv~~~nG-i~~~~~l~~~~~-~~vl 138 (318)
T 3hwr_A 95 KST-DTQSAA-LAMKPALAKSALVLSLQNG-VENADTLRSLLE-QEVA 138 (318)
T ss_dssp CGG-GHHHHH-HHHTTTSCTTCEEEEECSS-SSHHHHHHHHCC-SEEE
T ss_pred ccc-cHHHHH-HHHHHhcCCCCEEEEeCCC-CCcHHHHHHHcC-CcEE
Confidence 954 444433 3333457889999998765 333456667665 4443
|
| >1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A* | Back alignment and structure |
|---|
Probab=97.36 E-value=0.0002 Score=72.99 Aligned_cols=71 Identities=14% Similarity=0.090 Sum_probs=51.5
Q ss_pred eeecCCeEEEEecChhHHHHHHHHHcCCCEEEEECCCCCh--hHHHHcC----CcccCHHHHhc-cCCEEEEcCCCCc
Q 006864 225 VSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPA--DKARAVG----VELVSFDQALA-TADFISLHMPLNP 295 (628)
Q Consensus 225 ~~l~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~--~~a~~~g----~~~~sl~ell~-~aDvV~l~~Plt~ 295 (628)
..+.||+++|+|.|.+|++++..|...|.+|.++|+.... ..+...+ +...+++++.+ ++|+|+.++|...
T Consensus 115 ~~~~~~~vlvlGaGg~g~a~a~~L~~~G~~v~v~~R~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~DivIn~t~~~~ 192 (272)
T 1p77_A 115 WLRPNQHVLILGAGGATKGVLLPLLQAQQNIVLANRTFSKTKELAERFQPYGNIQAVSMDSIPLQTYDLVINATSAGL 192 (272)
T ss_dssp CCCTTCEEEEECCSHHHHTTHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGSCEEEEEGGGCCCSCCSEEEECCCC--
T ss_pred CCcCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHccccCCeEEeeHHHhccCCCCEEEECCCCCC
Confidence 4578999999999999999999999999999999987422 1222221 22234555444 8999999999653
|
| >1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=97.35 E-value=0.00037 Score=70.95 Aligned_cols=95 Identities=13% Similarity=0.118 Sum_probs=64.6
Q ss_pred eeecCCeEEEEecChhHHHHHHHHHcCCCEEEEECCCCCh--hHHHHcC----CcccCHHHHh-ccCCEEEEcCCCCccc
Q 006864 225 VSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPA--DKARAVG----VELVSFDQAL-ATADFISLHMPLNPTT 297 (628)
Q Consensus 225 ~~l~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~--~~a~~~g----~~~~sl~ell-~~aDvV~l~~Plt~~t 297 (628)
..+.||++.|+|.|.+|+.+|+.|...|.+|.++|+.... +.+...+ +...+++++. .++|+|+.++|.....
T Consensus 115 ~~l~~k~vlViGaGg~g~a~a~~L~~~G~~V~v~~R~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~DivVn~t~~~~~~ 194 (271)
T 1nyt_A 115 FIRPGLRILLIGAGGASRGVLLPLLSLDCAVTITNRTVSRAEELAKLFAHTGSIQALSMDELEGHEFDLIINATSSGISG 194 (271)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHTGGGSSEEECCSGGGTTCCCSEEEECCSCGGGT
T ss_pred cCcCCCEEEEECCcHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHhhccCCeeEecHHHhccCCCCEEEECCCCCCCC
Confidence 3578999999999999999999999999999999987422 1222222 1223444444 5899999999965421
Q ss_pred c-ccccHHHHhcCCCCcEEEEcCCCc
Q 006864 298 S-KIFNDETFAKMKKGVRIVNVARGG 322 (628)
Q Consensus 298 ~-~li~~~~l~~mk~gailIN~aRg~ 322 (628)
. .-+.. ..++++.+++|+.-..
T Consensus 195 ~~~~i~~---~~l~~~~~v~D~~y~p 217 (271)
T 1nyt_A 195 DIPAIPS---SLIHPGIYCYDMFYQK 217 (271)
T ss_dssp CCCCCCG---GGCCTTCEEEESCCCS
T ss_pred CCCCCCH---HHcCCCCEEEEeccCC
Confidence 0 01222 2256788888877654
|
| >2qrj_A Saccharopine dehydrogenase, NAD+, L-lysine- forming; sulfate, rossmann fold, alpha-aminoadipate pathway, fungal lysine biosynthesis; 1.60A {Saccharomyces cerevisiae} PDB: 2qrk_A* 2qrl_A* 2q99_A 3ugk_A 3uh1_A* 3uha_A* | Back alignment and structure |
|---|
Probab=97.35 E-value=0.00015 Score=77.75 Aligned_cols=83 Identities=20% Similarity=0.307 Sum_probs=69.1
Q ss_pred cCCeEEEEec-ChhHHHHHHHHHcCCC---EEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEcCCCCccccccccH
Q 006864 228 VGKTLAVMGF-GKVGSEVARRAKGLGM---NVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFND 303 (628)
Q Consensus 228 ~GktiGIIGl-G~IG~~vA~~l~~~G~---~V~~~d~~~~~~~a~~~g~~~~sl~ell~~aDvV~l~~Plt~~t~~li~~ 303 (628)
...++.|||. |+.|+.-++.++++|. .|.++|.... ..|-. + +.+.++|+|+.++......-.++.+
T Consensus 213 ~~~kV~ViG~~G~vG~~A~~~a~~lGa~~~~V~v~D~~~~-----~~g~~---~-~~i~~aDivIn~vlig~~aP~Lvt~ 283 (394)
T 2qrj_A 213 RKPTVLIIGALGRCGSGAIDLLHKVGIPDANILKWDIKET-----SRGGP---F-DEIPQADIFINCIYLSKPIAPFTNM 283 (394)
T ss_dssp CCCCEEEETTTSHHHHHHHHHHHHTTCCGGGEEEECHHHH-----TTCSC---C-THHHHSSEEEECCCCCSSCCCSCCH
T ss_pred CCCeEEEEcCCCHHHHHHHHHHHhCCCCcCceEEeecccc-----ccCCc---h-hhHhhCCEEEECcCcCCCCCcccCH
Confidence 3568999999 9999999999999998 8999997531 11322 2 3456999999999997667789999
Q ss_pred HHHhcC-CCCcEEEEcC
Q 006864 304 ETFAKM-KKGVRIVNVA 319 (628)
Q Consensus 304 ~~l~~m-k~gailIN~a 319 (628)
+.++.| |||++|||++
T Consensus 284 e~v~~m~k~gsVIVDVA 300 (394)
T 2qrj_A 284 EKLNNPNRRLRTVVDVS 300 (394)
T ss_dssp HHHCCTTCCCCEEEETT
T ss_pred HHHhcCcCCCeEEEEEe
Confidence 999999 9999999996
|
| >2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A* | Back alignment and structure |
|---|
Probab=97.34 E-value=0.00015 Score=65.05 Aligned_cols=94 Identities=14% Similarity=0.238 Sum_probs=58.0
Q ss_pred ecCCeEEEEecChhHHHHHHHHHcCCCEEEEECCCCCh-hHHHHcCCcc-----cC---HHHH-hccCCEEEEcCCCCcc
Q 006864 227 LVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPA-DKARAVGVEL-----VS---FDQA-LATADFISLHMPLNPT 296 (628)
Q Consensus 227 l~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~~g~~~-----~s---l~el-l~~aDvV~l~~Plt~~ 296 (628)
+.+++++|+|+|.+|+.+++.|...|++|+++|+.... +.....+... .+ ++++ +.++|+|++++|...+
T Consensus 4 ~~~~~v~I~G~G~iG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~d~vi~~~~~~~~ 83 (144)
T 2hmt_A 4 IKNKQFAVIGLGRFGGSIVKELHRMGHEVLAVDINEEKVNAYASYATHAVIANATEENELLSLGIRNFEYVIVAIGANIQ 83 (144)
T ss_dssp --CCSEEEECCSHHHHHHHHHHHHTTCCCEEEESCHHHHHTTTTTCSEEEECCTTCHHHHHTTTGGGCSEEEECCCSCHH
T ss_pred CcCCcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhCCEEEEeCCCCHHHHHhcCCCCCCEEEECCCCchH
Confidence 56789999999999999999999999999999976321 1122223321 12 2233 5789999999885422
Q ss_pred ccccccHHHHhcCCCCcEEEEcCCCc
Q 006864 297 TSKIFNDETFAKMKKGVRIVNVARGG 322 (628)
Q Consensus 297 t~~li~~~~l~~mk~gailIN~aRg~ 322 (628)
+ ++.-......+.+. .+|-...+.
T Consensus 84 ~-~~~~~~~~~~~~~~-~ii~~~~~~ 107 (144)
T 2hmt_A 84 A-STLTTLLLKELDIP-NIWVKAQNY 107 (144)
T ss_dssp H-HHHHHHHHHHTTCS-EEEEECCSH
T ss_pred H-HHHHHHHHHHcCCC-eEEEEeCCH
Confidence 1 11222334445565 555544443
|
| >3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=97.34 E-value=0.00032 Score=71.84 Aligned_cols=95 Identities=9% Similarity=0.112 Sum_probs=65.5
Q ss_pred eeeecCCeEEEEecChhHHHHHHHHHcCCC-EEEEECCCCCh--hHHHHcC---CcccCHHHHh-ccCCEEEEcCCCCcc
Q 006864 224 GVSLVGKTLAVMGFGKVGSEVARRAKGLGM-NVIAHDPYAPA--DKARAVG---VELVSFDQAL-ATADFISLHMPLNPT 296 (628)
Q Consensus 224 g~~l~GktiGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~~~--~~a~~~g---~~~~sl~ell-~~aDvV~l~~Plt~~ 296 (628)
+.++.||++.|+|.|.+|+.++..|...|. +|.+++|.... +.+...+ +...+++++- .++|+|+.++|..-.
T Consensus 115 ~~~l~~k~~lvlGaGg~~~aia~~L~~~G~~~v~i~~R~~~~a~~la~~~~~~~~~~~~~~~l~~~~~DivInaTp~gm~ 194 (272)
T 3pwz_A 115 GEPLRNRRVLLLGAGGAVRGALLPFLQAGPSELVIANRDMAKALALRNELDHSRLRISRYEALEGQSFDIVVNATSASLT 194 (272)
T ss_dssp CCCCTTSEEEEECCSHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHCCTTEEEECSGGGTTCCCSEEEECSSGGGG
T ss_pred CCCccCCEEEEECccHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhccCCeeEeeHHHhcccCCCEEEECCCCCCC
Confidence 456889999999999999999999999996 99999987522 1222332 2334556654 789999999996422
Q ss_pred cc-ccccHHHHhcCCCCcEEEEcCCC
Q 006864 297 TS-KIFNDETFAKMKKGVRIVNVARG 321 (628)
Q Consensus 297 t~-~li~~~~l~~mk~gailIN~aRg 321 (628)
.. ..+.. +.++++.+++|+.-.
T Consensus 195 ~~~~~i~~---~~l~~~~~V~DlvY~ 217 (272)
T 3pwz_A 195 ADLPPLPA---DVLGEAALAYELAYG 217 (272)
T ss_dssp TCCCCCCG---GGGTTCSEEEESSCS
T ss_pred CCCCCCCH---HHhCcCCEEEEeecC
Confidence 11 12332 235677777777544
|
| >3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum} | Back alignment and structure |
|---|
Probab=97.33 E-value=0.00064 Score=74.18 Aligned_cols=135 Identities=18% Similarity=0.180 Sum_probs=79.3
Q ss_pred CeEEEEecChhHHHHHHHHHcCCCEEEEECCCCChhHH--------------------HHcC-Ccc-cCHHHHhccCCEE
Q 006864 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKA--------------------RAVG-VEL-VSFDQALATADFI 287 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a--------------------~~~g-~~~-~sl~ell~~aDvV 287 (628)
++|+|||+|-+|..+|..+...|++|++||.....-.. .+.| ..+ .+.++.++.||++
T Consensus 22 ~~IaViGlGYVGLp~A~~~A~~G~~V~g~Did~~kV~~ln~G~~pi~Epgl~ell~~~~~~g~l~~tt~~~~ai~~ad~~ 101 (444)
T 3vtf_A 22 ASLSVLGLGYVGVVHAVGFALLGHRVVGYDVNPSIVERLRAGRPHIYEPGLEEALGRALSSGRLSFAESAEEAVAATDAT 101 (444)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEECSSHHHHHHTSSEE
T ss_pred CEEEEEccCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHCCCCCCCCCCHHHHHHHHHHcCCeeEEcCHHHHHhcCCce
Confidence 68999999999999999999999999999965321101 1112 122 2678889999999
Q ss_pred EEcCCCCcccccccc--------HHHHhcCC---CCcEEEEcCCCchhcHHHH-HHHHhCCCeeEEEee-ccCCCCCCCC
Q 006864 288 SLHMPLNPTTSKIFN--------DETFAKMK---KGVRIVNVARGGVIDEEAL-VRALDSGVVAQAALD-VFTEEPPAKD 354 (628)
Q Consensus 288 ~l~~Plt~~t~~li~--------~~~l~~mk---~gailIN~aRg~~vde~aL-~~aL~~g~i~ga~lD-V~~~EP~~~~ 354 (628)
++|+|......+-.| +..-..|+ +|.++|.-+.-.+=-.+.+ ...+.+.. .|.-++ +|.+|-+.+.
T Consensus 102 ~I~VpTP~~~d~~~Dl~~v~~a~~~I~~~l~~~~~g~lVV~eSTVppGtte~~~~~~l~~~~-~~~~f~v~~~PErl~eG 180 (444)
T 3vtf_A 102 FIAVGTPPAPDGSADLRYVEAAARAVGRGIRAKGRWHLVVVKSTVPPGTTEGLVARAVAEEA-GGVKFSVASNPEFLREG 180 (444)
T ss_dssp EECCCCCBCTTSSBCCHHHHHHHHHHHHHHHHHCSCCEEEECSCCCTTTTTTHHHHHHHTTT-TTCCCEEEECCCCCCTT
T ss_pred EEEecCCCCCCCCCCcHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCCchHHHHHHHHHHHhC-CCCCceeecCcccccCC
Confidence 999984222111111 12222343 6789999877555333333 23333321 011111 3456655433
Q ss_pred C---ccccCCcEEE
Q 006864 355 S---KLVQHENVTV 365 (628)
Q Consensus 355 ~---~L~~~~nvil 365 (628)
. .++..+++++
T Consensus 181 ~a~~d~~~~~riVi 194 (444)
T 3vtf_A 181 SALEDFFKPDRIVI 194 (444)
T ss_dssp SHHHHHHSCSCEEE
T ss_pred ccccccccCCcEEE
Confidence 3 3456677763
|
| >1omo_A Alanine dehydrogenase; two-domain, beta-sandwich-dimer, rossmann-fold NAD domain, human MU crystallin homolog; HET: NAD; 2.32A {Archaeoglobus fulgidus} SCOP: c.2.1.13 PDB: 1vll_A | Back alignment and structure |
|---|
Probab=97.31 E-value=0.0005 Score=71.94 Aligned_cols=86 Identities=13% Similarity=0.139 Sum_probs=62.7
Q ss_pred cCCeEEEEecChhHHHHHHHHHc-CC-CEEEEECCCCCh-h-HHHHc-----CCcccCHHHHhccCCEEEEcCCCCcccc
Q 006864 228 VGKTLAVMGFGKVGSEVARRAKG-LG-MNVIAHDPYAPA-D-KARAV-----GVELVSFDQALATADFISLHMPLNPTTS 298 (628)
Q Consensus 228 ~GktiGIIGlG~IG~~vA~~l~~-~G-~~V~~~d~~~~~-~-~a~~~-----g~~~~sl~ell~~aDvV~l~~Plt~~t~ 298 (628)
..+++||||.|.+|+.+++.+.. ++ -+|.+||+.... + .+... .+...++++++ ++|+|++++|.. .
T Consensus 124 ~~~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r~~~~a~~la~~~~~~~~~~~~~~~~e~v-~aDvVi~aTp~~---~ 199 (322)
T 1omo_A 124 NSSVFGFIGCGTQAYFQLEALRRVFDIGEVKAYDVREKAAKKFVSYCEDRGISASVQPAEEAS-RCDVLVTTTPSR---K 199 (322)
T ss_dssp TCCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHHHTTCCEEECCHHHHT-SSSEEEECCCCS---S
T ss_pred CCCEEEEEcCcHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhcCceEEECCHHHHh-CCCEEEEeeCCC---C
Confidence 35799999999999999999876 44 589999987522 1 12221 12334789999 999999999954 3
Q ss_pred ccccHHHHhcCCCCcEEEEcCC
Q 006864 299 KIFNDETFAKMKKGVRIVNVAR 320 (628)
Q Consensus 299 ~li~~~~l~~mk~gailIN~aR 320 (628)
.++.. +.+++|..+++++.
T Consensus 200 pv~~~---~~l~~G~~V~~ig~ 218 (322)
T 1omo_A 200 PVVKA---EWVEEGTHINAIGA 218 (322)
T ss_dssp CCBCG---GGCCTTCEEEECSC
T ss_pred ceecH---HHcCCCeEEEECCC
Confidence 44543 45789998888853
|
| >3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=97.31 E-value=0.00021 Score=74.07 Aligned_cols=105 Identities=15% Similarity=0.155 Sum_probs=69.1
Q ss_pred CeEEEEecChhHHHHHHHHHcCCCEEEEECCCCC-hhHHHHcCCcccC----------H-HHHhccCCEEEEcCCCCccc
Q 006864 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAP-ADKARAVGVELVS----------F-DQALATADFISLHMPLNPTT 297 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~g~~~~s----------l-~ell~~aDvV~l~~Plt~~t 297 (628)
++|+|||.|.||..+|..|. .|.+|.++++... .+..++.|+...+ . .+....+|+|++++|-. ++
T Consensus 3 mkI~IiGaGa~G~~~a~~L~-~g~~V~~~~r~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~D~vilavK~~-~~ 80 (307)
T 3ego_A 3 LKIGIIGGGSVGLLCAYYLS-LYHDVTVVTRRQEQAAAIQSEGIRLYKGGEEFRADCSADTSINSDFDLLVVTVKQH-QL 80 (307)
T ss_dssp CEEEEECCSHHHHHHHHHHH-TTSEEEEECSCHHHHHHHHHHCEEEEETTEEEEECCEEESSCCSCCSEEEECCCGG-GH
T ss_pred CEEEEECCCHHHHHHHHHHh-cCCceEEEECCHHHHHHHHhCCceEecCCCeecccccccccccCCCCEEEEEeCHH-HH
Confidence 68999999999999999999 8999999998752 2334444543221 1 24567899999999833 23
Q ss_pred cccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhCCCeeE
Q 006864 298 SKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQ 340 (628)
Q Consensus 298 ~~li~~~~l~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~g 340 (628)
...+ +.++.+.++. ||.+.-| +-.++.+.+.+...++.+
T Consensus 81 ~~~l--~~l~~~~~~~-ivs~~nG-i~~~e~l~~~~~~~~vl~ 119 (307)
T 3ego_A 81 QSVF--SSLERIGKTN-ILFLQNG-MGHIHDLKDWHVGHSIYV 119 (307)
T ss_dssp HHHH--HHTTSSCCCE-EEECCSS-SHHHHHHHTCCCSCEEEE
T ss_pred HHHH--HHhhcCCCCe-EEEecCC-ccHHHHHHHhCCCCcEEE
Confidence 3332 2334445666 8887655 334455666555555543
|
| >1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A* | Back alignment and structure |
|---|
Probab=97.29 E-value=0.0015 Score=69.77 Aligned_cols=94 Identities=24% Similarity=0.255 Sum_probs=75.2
Q ss_pred eeeecCCeEEEEecChhHHHHHHHHHcCCC-EEEEECCC----CCh----------hHHHHcCC--cccCHHHHhccCCE
Q 006864 224 GVSLVGKTLAVMGFGKVGSEVARRAKGLGM-NVIAHDPY----APA----------DKARAVGV--ELVSFDQALATADF 286 (628)
Q Consensus 224 g~~l~GktiGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~----~~~----------~~a~~~g~--~~~sl~ell~~aDv 286 (628)
|..+...++.|+|.|..|..+|+.|.+.|. +|+.+|+. ... ..+..... ...+|.|.++.+|+
T Consensus 187 g~~l~~~kVVv~GAGaAG~~iAkll~~~G~~~I~v~Dr~Gli~~~R~~~~L~~~k~~~A~~~~~~~~~~~L~eav~~ADV 266 (388)
T 1vl6_A 187 EKKIEEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRKGILNENDPETCLNEYHLEIARITNPERLSGDLETALEGADF 266 (388)
T ss_dssp TCCTTTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTEECCTTSGGGCSSHHHHHHHHTSCTTCCCSCHHHHHTTCSE
T ss_pred CCCCCCcEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCCcccCCCcccccCHHHHHHHHhhhccCchhhHHHHHccCCE
Confidence 557889999999999999999999999998 89999987 211 11222111 13479999999999
Q ss_pred EEEcCCCCccccccccHHHHhcCCCCcEEEEcCCCc
Q 006864 287 ISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGG 322 (628)
Q Consensus 287 V~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~ 322 (628)
++-+. +-+++.++.++.|+++++|+.+++..
T Consensus 267 lIG~S-----ap~l~t~emVk~Ma~~pIIfalSNPt 297 (388)
T 1vl6_A 267 FIGVS-----RGNILKPEWIKKMSRKPVIFALANPV 297 (388)
T ss_dssp EEECS-----CSSCSCHHHHTTSCSSCEEEECCSSS
T ss_pred EEEeC-----CCCccCHHHHHhcCCCCEEEEcCCCC
Confidence 98763 24899999999999999999999755
|
| >2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A | Back alignment and structure |
|---|
Probab=97.28 E-value=0.00034 Score=72.79 Aligned_cols=103 Identities=15% Similarity=0.176 Sum_probs=67.1
Q ss_pred CCeEEEEecChhHHHHHHHHHcCCC-EEEEECCCCChhHHH--H-------c--C--Ccc-cCHHHHhccCCEEEEcCCC
Q 006864 229 GKTLAVMGFGKVGSEVARRAKGLGM-NVIAHDPYAPADKAR--A-------V--G--VEL-VSFDQALATADFISLHMPL 293 (628)
Q Consensus 229 GktiGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~~~~~a~--~-------~--g--~~~-~sl~ell~~aDvV~l~~Pl 293 (628)
.++|+|||.|.||..+|..|...|+ +|..||+........ + . . +.. .++ +.++.||+|+++++.
T Consensus 4 ~~kI~VIGaG~~G~~ia~~la~~g~~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~-~a~~~aDiVi~avg~ 82 (317)
T 2ewd_A 4 RRKIAVIGSGQIGGNIAYIVGKDNLADVVLFDIAEGIPQGKALDITHSMVMFGSTSKVIGTDDY-ADISGSDVVIITASI 82 (317)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEEESCG-GGGTTCSEEEECCCC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCCchHHHHHHHHHHhhhhhcCCCcEEEECCCH-HHhCCCCEEEEeCCC
Confidence 4689999999999999999988888 999999875322110 0 0 1 222 356 778999999999953
Q ss_pred Cccccccc-------c----H---HHHhcCCCCcEEEEcCCCchhcHHHHHHHH
Q 006864 294 NPTTSKIF-------N----D---ETFAKMKKGVRIVNVARGGVIDEEALVRAL 333 (628)
Q Consensus 294 t~~t~~li-------~----~---~~l~~mk~gailIN~aRg~~vde~aL~~aL 333 (628)
.. ..++- + + +.+....+++++++++.+.-+....+.+..
T Consensus 83 p~-~~g~~r~d~~~~~~~i~~~i~~~i~~~~~~~iii~~sNp~~~~~~~~~~~~ 135 (317)
T 2ewd_A 83 PG-RPKDDRSELLFGNARILDSVAEGVKKYCPNAFVICITNPLDVMVSHFQKVS 135 (317)
T ss_dssp SS-CCSSCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECCSSHHHHHHHHHHHH
T ss_pred CC-CCCCcHHHHHHhhHHHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHhh
Confidence 21 11110 0 1 122333569999999876555555555543
|
| >4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=97.23 E-value=0.00054 Score=71.27 Aligned_cols=64 Identities=23% Similarity=0.402 Sum_probs=51.4
Q ss_pred CeEEEEecChhHHHHHHHHHcC-CCEEE-EECCCCCh--hHHHHcCCcccCHHHHhc--cCCEEEEcCCC
Q 006864 230 KTLAVMGFGKVGSEVARRAKGL-GMNVI-AHDPYAPA--DKARAVGVELVSFDQALA--TADFISLHMPL 293 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~-G~~V~-~~d~~~~~--~~a~~~g~~~~sl~ell~--~aDvV~l~~Pl 293 (628)
.+|||||+|.||+..++.++.. ++++. ++|+.... ..+...|+.+.+++++++ ++|+|++++|-
T Consensus 4 ~~vgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~tp~ 73 (331)
T 4hkt_A 4 VRFGLLGAGRIGKVHAKAVSGNADARLVAVADAFPAAAEAIAGAYGCEVRTIDAIEAAADIDAVVICTPT 73 (331)
T ss_dssp EEEEEECCSHHHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHTTCEECCHHHHHHCTTCCEEEECSCG
T ss_pred eEEEEECCCHHHHHHHHHHhhCCCcEEEEEECCCHHHHHHHHHHhCCCcCCHHHHhcCCCCCEEEEeCCc
Confidence 4799999999999999999875 78877 58887522 234556777558999998 89999999984
|
| >3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B* | Back alignment and structure |
|---|
Probab=97.21 E-value=0.00076 Score=72.21 Aligned_cols=87 Identities=20% Similarity=0.220 Sum_probs=60.1
Q ss_pred CeEEEEecChhHHHHHHHHHc-CCCEEEEECCCCC-hhHH----HHcC------------C------c-c-cCHHHHhcc
Q 006864 230 KTLAVMGFGKVGSEVARRAKG-LGMNVIAHDPYAP-ADKA----RAVG------------V------E-L-VSFDQALAT 283 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~-~G~~V~~~d~~~~-~~~a----~~~g------------~------~-~-~sl~ell~~ 283 (628)
++|+|||.|.||..+|..|.. .|.+|.+||++.. .+.. ...+ . . . .+++++++.
T Consensus 3 mkI~ViGaG~~G~~~a~~La~~~G~~V~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (404)
T 3c7a_A 3 VKVCVCGGGNGAHTLSGLAASRDGVEVRVLTLFADEAERWTKALGADELTVIVNEKDGTQTEVKSRPKVITKDPEIAISG 82 (404)
T ss_dssp EEEEEECCSHHHHHHHHHHTTSTTEEEEEECCSTTHHHHHHHHHTTSCEEEEEECSSSCEEEEEECCSEEESCHHHHHTT
T ss_pred ceEEEECCCHHHHHHHHHHHhCCCCEEEEEeCCCCcHHHHHHHHhhccceeeeecCCCccceeeccceEEeCCHHHHhCC
Confidence 479999999999999999977 5999999993321 1111 1111 1 1 1 268888999
Q ss_pred CCEEEEcCCCCccccccccHHHHhcCCCCcEEEEc
Q 006864 284 ADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNV 318 (628)
Q Consensus 284 aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~ 318 (628)
||+|++++|-.. .+.++ ++.-..++++++|+..
T Consensus 83 aD~Vilav~~~~-~~~v~-~~l~~~l~~~~ivv~~ 115 (404)
T 3c7a_A 83 ADVVILTVPAFA-HEGYF-QAMAPYVQDSALIVGL 115 (404)
T ss_dssp CSEEEECSCGGG-HHHHH-HHHTTTCCTTCEEEET
T ss_pred CCEEEEeCchHH-HHHHH-HHHHhhCCCCcEEEEc
Confidence 999999999443 33332 2333457789999985
|
| >1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A* | Back alignment and structure |
|---|
Probab=97.19 E-value=0.00092 Score=69.43 Aligned_cols=109 Identities=20% Similarity=0.217 Sum_probs=67.4
Q ss_pred CeEEEEecChhHHHHHHHHHc--CCCEEEEECCCCChhHHH----Hc-------C--Ccc-cCHHHHhccCCEEEEcCCC
Q 006864 230 KTLAVMGFGKVGSEVARRAKG--LGMNVIAHDPYAPADKAR----AV-------G--VEL-VSFDQALATADFISLHMPL 293 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~--~G~~V~~~d~~~~~~~a~----~~-------g--~~~-~sl~ell~~aDvV~l~~Pl 293 (628)
++|+|||.|.+|..+|..|.. +|.+|..||+........ .. . +.. .++++ ++.||+|++++|.
T Consensus 1 mkI~VIGaG~vG~~la~~la~~~~g~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~~~-l~~aDvViiav~~ 79 (310)
T 1guz_A 1 MKITVIGAGNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGSNDYAD-TANSDIVIITAGL 79 (310)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEEESCGGG-GTTCSEEEECCSC
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHhHHhhhhcccCCcEEEECCCHHH-HCCCCEEEEeCCC
Confidence 479999999999999999976 589999999875322211 11 1 112 35666 8999999999984
Q ss_pred Ccccccc-------ccH-------HHHhcCCCCcEEEEcCCCchhcH--HHHHHH--HhCCCeeEEE
Q 006864 294 NPTTSKI-------FND-------ETFAKMKKGVRIVNVARGGVIDE--EALVRA--LDSGVVAQAA 342 (628)
Q Consensus 294 t~~t~~l-------i~~-------~~l~~mk~gailIN~aRg~~vde--~aL~~a--L~~g~i~ga~ 342 (628)
. ...++ .|. +.+....+++++++++- .+|. ..+.+. +...++.|.|
T Consensus 80 p-~~~g~~r~dl~~~n~~i~~~i~~~i~~~~~~~~viv~tN--P~~~~~~~~~~~~~~~~~rviG~g 143 (310)
T 1guz_A 80 P-RKPGMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIVVSN--PLDIMTHVAWVRSGLPKERVIGMA 143 (310)
T ss_dssp C-CCTTCCHHHHHHHHHHHHHHHHHHHHHHCSSCEEEECCS--SHHHHHHHHHHHHCSCGGGEEEEC
T ss_pred C-CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEEcC--chHHHHHHHHHhcCCChHHEEECC
Confidence 3 22222 111 12222357889999843 3433 233332 3344666653
|
| >1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=97.18 E-value=0.00092 Score=69.71 Aligned_cols=110 Identities=15% Similarity=0.118 Sum_probs=67.4
Q ss_pred CeEEEEecChhHHHHHHHHHcCCC--EEEEECCCCCh-hH-HHHc--------C--CcccCHHHHhccCCEEEEcCCCCc
Q 006864 230 KTLAVMGFGKVGSEVARRAKGLGM--NVIAHDPYAPA-DK-ARAV--------G--VELVSFDQALATADFISLHMPLNP 295 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~G~--~V~~~d~~~~~-~~-a~~~--------g--~~~~sl~ell~~aDvV~l~~Plt~ 295 (628)
++|+|||.|.||..+|..|...|+ +|..||+.... +. ...+ . +...+ .+.++.||+|++++|...
T Consensus 1 mkI~VIGaG~~G~~la~~l~~~g~~~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~i~~~d-~~~~~~aDvViiav~~~~ 79 (319)
T 1a5z_A 1 MKIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYAGD-YADLKGSDVVIVAAGVPQ 79 (319)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEEECC-GGGGTTCSEEEECCCCCC
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHHHHHhhhhhcCCcEEEeCC-HHHhCCCCEEEEccCCCC
Confidence 479999999999999999988888 99999986421 11 1111 1 11124 356789999999999543
Q ss_pred cccccc-----------cHHH---HhcCCCCcEEEEcCCCchhcHHHHHHHH--hCCCeeEE
Q 006864 296 TTSKIF-----------NDET---FAKMKKGVRIVNVARGGVIDEEALVRAL--DSGVVAQA 341 (628)
Q Consensus 296 ~t~~li-----------~~~~---l~~mk~gailIN~aRg~~vde~aL~~aL--~~g~i~ga 341 (628)
. .++- -++. +....+++++|+++-+--+....+.+.. ...++.|.
T Consensus 80 ~-~g~~r~dl~~~n~~i~~~i~~~i~~~~~~~~ii~~tNp~~~~~~~~~~~~~~~~~rviG~ 140 (319)
T 1a5z_A 80 K-PGETRLQLLGRNARVMKEIARNVSKYAPDSIVIVVTNPVDVLTYFFLKESGMDPRKVFGS 140 (319)
T ss_dssp C-SSCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECSSSHHHHHHHHHHHHTCCTTTEEEC
T ss_pred C-CCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeCCcHHHHHHHHHHHhCCChhhEEee
Confidence 2 1110 0222 2233578899988654433333333332 34456554
|
| >3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=97.15 E-value=0.00083 Score=69.14 Aligned_cols=103 Identities=15% Similarity=0.163 Sum_probs=65.6
Q ss_pred CCeEEEEecChhHHH-HHHHHHc-CCCEEE-EECCCCCh--hHHHHcCCc-ccCHHHHhccCCEEEEcCCCCcccccccc
Q 006864 229 GKTLAVMGFGKVGSE-VARRAKG-LGMNVI-AHDPYAPA--DKARAVGVE-LVSFDQALATADFISLHMPLNPTTSKIFN 302 (628)
Q Consensus 229 GktiGIIGlG~IG~~-vA~~l~~-~G~~V~-~~d~~~~~--~~a~~~g~~-~~sl~ell~~aDvV~l~~Plt~~t~~li~ 302 (628)
-.++||||+|.||+. +++.++. -++++. ++|+.... ..+...|+. +.++++++++.|+|++++|-.. ..
T Consensus 6 ~~~igiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~~~~~~~~~~~ll~~~D~V~i~tp~~~--h~--- 80 (308)
T 3uuw_A 6 NIKMGMIGLGSIAQKAYLPILTKSERFEFVGAFTPNKVKREKICSDYRIMPFDSIESLAKKCDCIFLHSSTET--HY--- 80 (308)
T ss_dssp CCEEEEECCSHHHHHHTHHHHTSCSSSEEEEEECSCHHHHHHHHHHHTCCBCSCHHHHHTTCSEEEECCCGGG--HH---
T ss_pred cCcEEEEecCHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHHcCCCCcCCHHHHHhcCCEEEEeCCcHh--HH---
Confidence 368999999999996 8888876 468887 58887522 233455664 4589999999999999999332 21
Q ss_pred HHHHhcCCCCc-EEEE-cCCCchhcHHHHHHHHhCC
Q 006864 303 DETFAKMKKGV-RIVN-VARGGVIDEEALVRALDSG 336 (628)
Q Consensus 303 ~~~l~~mk~ga-ilIN-~aRg~~vde~aL~~aL~~g 336 (628)
+-....++.|. +++. ..--.+-+.+.|.++.++.
T Consensus 81 ~~~~~al~~gk~vl~EKP~~~~~~~~~~l~~~a~~~ 116 (308)
T 3uuw_A 81 EIIKILLNLGVHVYVDKPLASTVSQGEELIELSTKK 116 (308)
T ss_dssp HHHHHHHHTTCEEEECSSSSSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCcEEEcCCCCCCHHHHHHHHHHHHHc
Confidence 11122234443 3332 2223444555666666553
|
| >4b4u_A Bifunctional protein fold; oxidoreductase; HET: NAP; 1.45A {Acinetobacter baumannii atcc 19606} PDB: 4b4v_A* 4b4w_A* | Back alignment and structure |
|---|
Probab=97.15 E-value=0.00091 Score=69.11 Aligned_cols=79 Identities=16% Similarity=0.242 Sum_probs=65.5
Q ss_pred ceeeecCCeEEEEecChh-HHHHHHHHHcCCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEcCCCCccccccc
Q 006864 223 VGVSLVGKTLAVMGFGKV-GSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIF 301 (628)
Q Consensus 223 ~g~~l~GktiGIIGlG~I-G~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~sl~ell~~aDvV~l~~Plt~~t~~li 301 (628)
.+.++.||++.|||-+.| |+.+|..|...++.|..+.... .+|.+.+++||+|+.++.. .+++
T Consensus 173 ~~i~l~Gk~vvViGRS~iVGkPla~LL~~~~ATVTi~Hs~T------------~dl~~~~~~ADIvV~A~G~----p~~i 236 (303)
T 4b4u_A 173 NNIEIAGKHAVVVGRSAILGKPMAMMLLQANATVTICHSRT------------QNLPELVKQADIIVGAVGK----AELI 236 (303)
T ss_dssp TTCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC------------SSHHHHHHTCSEEEECSCS----TTCB
T ss_pred HCCCCCCCEEEEEeccccccchHHHHHHhcCCEEEEecCCC------------CCHHHHhhcCCeEEeccCC----CCcc
Confidence 467899999999998865 9999999999999999886542 2588899999999998762 3567
Q ss_pred cHHHHhcCCCCcEEEEcCC
Q 006864 302 NDETFAKMKKGVRIVNVAR 320 (628)
Q Consensus 302 ~~~~l~~mk~gailIN~aR 320 (628)
..+. .|+|+++||++-
T Consensus 237 ~~d~---vk~GavVIDVGi 252 (303)
T 4b4u_A 237 QKDW---IKQGAVVVDAGF 252 (303)
T ss_dssp CGGG---SCTTCEEEECCC
T ss_pred cccc---ccCCCEEEEece
Confidence 6654 599999999983
|
| >2f1f_A Acetolactate synthase isozyme III small subunit; ferredoxin fold, ACT domain, transferase; HET: P33 1PE; 1.75A {Escherichia coli} SCOP: d.58.18.6 d.58.18.6 | Back alignment and structure |
|---|
Probab=97.14 E-value=0.00045 Score=65.47 Aligned_cols=70 Identities=16% Similarity=0.192 Sum_probs=57.7
Q ss_pred CcEEEEeccCCCCchhhHHhhhhcCCccccceEEeeeecCccEEEEEEeCCC--CCHHHHHHHhcccCcccc
Q 006864 558 GNLILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDEE--PNQDSLKEIGKVHFVARI 627 (628)
Q Consensus 558 ~~~Llv~~~D~PGvIa~V~~iL~~~~INIa~m~v~R~~~gg~Al~~i~vD~~--~~~~~l~~L~~l~~v~~v 627 (628)
.|.|-+...|+||++++|+.+|++.|+||.++.++..+..+.+.+.|.++.. .-+.+.++|+++++|.+|
T Consensus 3 ~~~IsV~v~NrpGvLarIt~lfs~rg~NI~Sl~v~~t~d~~~sriti~V~~d~~~leqI~kqL~Kl~dV~~V 74 (164)
T 2f1f_A 3 RRILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTVGDEKVLEQIEKQLHKLVDVLRV 74 (164)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHTTTCCCSEEEEEECSCSSEEEEEEEEESCHHHHHHHHHHHHHSTTEEEE
T ss_pred EEEEEEEEeCCCcHHHHHHHHHHHCCCCeeeceeeecCCCCEEEEEEEEeccHHHHHHHHHHHcCCCCEEEE
Confidence 3677778899999999999999999999999999876666788888788743 223678888888888775
|
| >1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=97.14 E-value=0.00054 Score=63.08 Aligned_cols=90 Identities=12% Similarity=0.094 Sum_probs=58.0
Q ss_pred cCCeEEEEecChhHHHHHHHHHcCCCEEEEECCCCCh---hHH--HHcCCccc--------CHHHH-hccCCEEEEcCCC
Q 006864 228 VGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPA---DKA--RAVGVELV--------SFDQA-LATADFISLHMPL 293 (628)
Q Consensus 228 ~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~---~~a--~~~g~~~~--------sl~el-l~~aDvV~l~~Pl 293 (628)
..+++.|+|+|.+|+.+++.|...|++|.+.|+.... ... ...|+..+ .++++ +..+|+|+++++-
T Consensus 2 ~~~~vlI~G~G~vG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~ 81 (153)
T 1id1_A 2 RKDHFIVCGHSILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLGDNADVIPGDSNDSSVLKKAGIDRCRAILALSDN 81 (153)
T ss_dssp CCSCEEEECCSHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHCTTCEEEESCTTSHHHHHHHTTTTCSEEEECSSC
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEECCChHHHHHHHHhhcCCCeEEEcCCCCHHHHHHcChhhCCEEEEecCC
Confidence 3578999999999999999999999999999986311 111 12244321 24454 7899999999984
Q ss_pred CccccccccHHHHhcCCCCcEEEEcC
Q 006864 294 NPTTSKIFNDETFAKMKKGVRIVNVA 319 (628)
Q Consensus 294 t~~t~~li~~~~l~~mk~gailIN~a 319 (628)
.+ .++.-......+.+...+|...
T Consensus 82 d~--~n~~~~~~a~~~~~~~~ii~~~ 105 (153)
T 1id1_A 82 DA--DNAFVVLSAKDMSSDVKTVLAV 105 (153)
T ss_dssp HH--HHHHHHHHHHHHTSSSCEEEEC
T ss_pred hH--HHHHHHHHHHHHCCCCEEEEEE
Confidence 32 2333233444454444444433
|
| >3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=97.13 E-value=0.00074 Score=70.61 Aligned_cols=64 Identities=27% Similarity=0.390 Sum_probs=50.1
Q ss_pred CeEEEEecChhHHHHHHHHHcC-CCEEE-EECCCCCh--hHHHHcCCcc-cCHHHHhc--cCCEEEEcCCC
Q 006864 230 KTLAVMGFGKVGSEVARRAKGL-GMNVI-AHDPYAPA--DKARAVGVEL-VSFDQALA--TADFISLHMPL 293 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~-G~~V~-~~d~~~~~--~~a~~~g~~~-~sl~ell~--~aDvV~l~~Pl 293 (628)
.+|||||+|.||+..++.++.. +++++ ++|+.... ..+...|+.. .+++++++ ++|+|++++|-
T Consensus 5 ~rvgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~g~~~~~~~~~~l~~~~~D~V~i~tp~ 75 (344)
T 3euw_A 5 LRIALFGAGRIGHVHAANIAANPDLELVVIADPFIEGAQRLAEANGAEAVASPDEVFARDDIDGIVIGSPT 75 (344)
T ss_dssp EEEEEECCSHHHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHTTTCEEESSHHHHTTCSCCCEEEECSCG
T ss_pred eEEEEECCcHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHcCCceeCCHHHHhcCCCCCEEEEeCCc
Confidence 4799999999999999999876 68877 57886522 2234456543 48999998 89999999994
|
| >1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=97.12 E-value=0.00054 Score=70.95 Aligned_cols=64 Identities=20% Similarity=0.277 Sum_probs=47.5
Q ss_pred CeEEEEecChhHHHHHHHHHcCC--CEEEEECCCCChh--HHHHcC---------Ccc--cCHHHHhccCCEEEEcCCCC
Q 006864 230 KTLAVMGFGKVGSEVARRAKGLG--MNVIAHDPYAPAD--KARAVG---------VEL--VSFDQALATADFISLHMPLN 294 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~G--~~V~~~d~~~~~~--~a~~~g---------~~~--~sl~ell~~aDvV~l~~Plt 294 (628)
++|+|||.|.||..+|..|...| .+|..||+..... .+..++ +.. .++ +.++.||+|++++|..
T Consensus 2 ~kI~VIGaG~~G~~la~~L~~~g~~~~V~l~d~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~-~~~~~aDvViiav~~~ 80 (309)
T 1hyh_A 2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVINDW-AALADADVVISTLGNI 80 (309)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEEESCG-GGGTTCSEEEECCSCG
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHHHHhhhhhcCCCeEEEeCCH-HHhCCCCEEEEecCCc
Confidence 58999999999999999998777 6999999864211 111111 222 356 7789999999999953
|
| >3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2} | Back alignment and structure |
|---|
Probab=97.10 E-value=0.0008 Score=70.73 Aligned_cols=65 Identities=9% Similarity=0.186 Sum_probs=50.9
Q ss_pred CeEEEEecChhHHHHHHHHHcC-CCEEE-EECCCCCh--hHHHHcCCcc-cCHHHHh--ccCCEEEEcCCCC
Q 006864 230 KTLAVMGFGKVGSEVARRAKGL-GMNVI-AHDPYAPA--DKARAVGVEL-VSFDQAL--ATADFISLHMPLN 294 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~-G~~V~-~~d~~~~~--~~a~~~g~~~-~sl~ell--~~aDvV~l~~Plt 294 (628)
.+|||||+|.||+..++.++.. ++++. ++|+.... ..+...|+.. .++++++ .+.|+|++++|-.
T Consensus 6 ~~vgiiG~G~~g~~~~~~l~~~~~~~lvav~d~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~D~V~i~tp~~ 77 (354)
T 3db2_A 6 VGVAAIGLGRWAYVMADAYTKSEKLKLVTCYSRTEDKREKFGKRYNCAGDATMEALLAREDVEMVIITVPND 77 (354)
T ss_dssp EEEEEECCSHHHHHHHHHHTTCSSEEEEEEECSSHHHHHHHHHHHTCCCCSSHHHHHHCSSCCEEEECSCTT
T ss_pred ceEEEEccCHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHcCCCCcCCHHHHhcCCCCCEEEEeCChH
Confidence 4799999999999999999887 78866 57887522 2234557654 4899999 5699999999954
|
| >1tlt_A Putative oxidoreductase (virulence factor MVIM HO; structural genomics, NYSGXRC, PSI, protein structure initiative; 2.70A {Escherichia coli} SCOP: c.2.1.3 d.81.1.5 | Back alignment and structure |
|---|
Probab=97.09 E-value=0.0015 Score=67.52 Aligned_cols=103 Identities=17% Similarity=0.162 Sum_probs=67.4
Q ss_pred CeEEEEecChhHHH-HHHHHHcC-CCEEE-EECCCCCh--hHHHHcCCcc-cCHHHHhccCCEEEEcCCCCccccccccH
Q 006864 230 KTLAVMGFGKVGSE-VARRAKGL-GMNVI-AHDPYAPA--DKARAVGVEL-VSFDQALATADFISLHMPLNPTTSKIFND 303 (628)
Q Consensus 230 ktiGIIGlG~IG~~-vA~~l~~~-G~~V~-~~d~~~~~--~~a~~~g~~~-~sl~ell~~aDvV~l~~Plt~~t~~li~~ 303 (628)
.+|||||+|.||+. +++.++.. ++++. ++|+.... ..++..|+.. .+++++..++|+|++++|-... -+
T Consensus 6 ~~vgiiG~G~~g~~~~~~~l~~~~~~~lvav~d~~~~~~~~~~~~~g~~~~~~~~~l~~~~D~V~i~tp~~~h-----~~ 80 (319)
T 1tlt_A 6 LRIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSPTRAKALPICESWRIPYADSLSSLAASCDAVFVHSSTASH-----FD 80 (319)
T ss_dssp EEEEEECCSTHHHHTHHHHHHSCSSEEEEEEECSSCTTHHHHHHHHTCCBCSSHHHHHTTCSEEEECSCTTHH-----HH
T ss_pred ceEEEECCCHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHHcCCCccCcHHHhhcCCCEEEEeCCchhH-----HH
Confidence 47999999999997 88888764 67876 78887633 2344456653 3677776789999999994321 12
Q ss_pred HHHhcCCCCc-EEEEc-CCCchhcHHHHHHHHhCCC
Q 006864 304 ETFAKMKKGV-RIVNV-ARGGVIDEEALVRALDSGV 337 (628)
Q Consensus 304 ~~l~~mk~ga-ilIN~-aRg~~vde~aL~~aL~~g~ 337 (628)
-....++.|. +++.- .-..+-+.+.|.++.++..
T Consensus 81 ~~~~al~~G~~v~~eKP~~~~~~~~~~l~~~a~~~g 116 (319)
T 1tlt_A 81 VVSTLLNAGVHVCVDKPLAENLRDAERLVELAARKK 116 (319)
T ss_dssp HHHHHHHTTCEEEEESSSCSSHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcC
Confidence 2223355665 55542 2234456667777776643
|
| >3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=97.08 E-value=0.0011 Score=68.14 Aligned_cols=91 Identities=19% Similarity=0.252 Sum_probs=61.5
Q ss_pred eeeecCCeEEEEecChhHHHHHHHHHcCCC-EEEEECCCCChhHHHHc--CCcccCHHHH--hccCCEEEEcCCCC--cc
Q 006864 224 GVSLVGKTLAVMGFGKVGSEVARRAKGLGM-NVIAHDPYAPADKARAV--GVELVSFDQA--LATADFISLHMPLN--PT 296 (628)
Q Consensus 224 g~~l~GktiGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~~~~~a~~~--g~~~~sl~el--l~~aDvV~l~~Plt--~~ 296 (628)
+.++.||++.|+|.|.+|++++..|...|. +|.+++|.. ++++++ .+...+++++ + ++|+|+.++|.. ++
T Consensus 117 ~~~~~~k~vlvlGaGGaaraia~~L~~~G~~~v~v~nRt~--~ka~~La~~~~~~~~~~l~~l-~~DivInaTp~Gm~~~ 193 (282)
T 3fbt_A 117 RVEIKNNICVVLGSGGAARAVLQYLKDNFAKDIYVVTRNP--EKTSEIYGEFKVISYDELSNL-KGDVIINCTPKGMYPK 193 (282)
T ss_dssp TCCCTTSEEEEECSSTTHHHHHHHHHHTTCSEEEEEESCH--HHHHHHCTTSEEEEHHHHTTC-CCSEEEECSSTTSTTS
T ss_pred CCCccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCH--HHHHHHHHhcCcccHHHHHhc-cCCEEEECCccCccCC
Confidence 345789999999999999999999999998 999999864 333332 2222333333 4 899999999963 22
Q ss_pred cc-ccccHHHHhcCCCCcEEEEcCC
Q 006864 297 TS-KIFNDETFAKMKKGVRIVNVAR 320 (628)
Q Consensus 297 t~-~li~~~~l~~mk~gailIN~aR 320 (628)
.. -.+..+. ++++.+++|+.-
T Consensus 194 ~~~~pi~~~~---l~~~~~v~DlvY 215 (282)
T 3fbt_A 194 EGESPVDKEV---VAKFSSAVDLIY 215 (282)
T ss_dssp TTCCSSCHHH---HTTCSEEEESCC
T ss_pred CccCCCCHHH---cCCCCEEEEEee
Confidence 11 1233333 356666677653
|
| >1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=97.08 E-value=0.0007 Score=69.41 Aligned_cols=94 Identities=16% Similarity=0.226 Sum_probs=65.1
Q ss_pred eeecCCeEEEEecChhHHHHHHHHHcCCCEEEEECCCCCh--hHHHHcC----------CcccCHHHHhccCCEEEEcCC
Q 006864 225 VSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPA--DKARAVG----------VELVSFDQALATADFISLHMP 292 (628)
Q Consensus 225 ~~l~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~--~~a~~~g----------~~~~sl~ell~~aDvV~l~~P 292 (628)
.++.||++.|+|.|.||+++|+.|...| +|+++|+.... ..+.+.+ +...++.+.+.++|+|+.++|
T Consensus 124 ~~l~~k~vlV~GaGgiG~aia~~L~~~G-~V~v~~r~~~~~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~~DilVn~ag 202 (287)
T 1nvt_A 124 GRVKDKNIVIYGAGGAARAVAFELAKDN-NIIIANRTVEKAEALAKEIAEKLNKKFGEEVKFSGLDVDLDGVDIIINATP 202 (287)
T ss_dssp CCCCSCEEEEECCSHHHHHHHHHHTSSS-EEEEECSSHHHHHHHHHHHHHHHTCCHHHHEEEECTTCCCTTCCEEEECSC
T ss_pred CCcCCCEEEEECchHHHHHHHHHHHHCC-CEEEEECCHHHHHHHHHHHhhhcccccceeEEEeeHHHhhCCCCEEEECCC
Confidence 3578999999999999999999999999 99999986421 1111111 112233566788999999998
Q ss_pred CCcccc---ccccHHHHhcCCCCcEEEEcCCC
Q 006864 293 LNPTTS---KIFNDETFAKMKKGVRIVNVARG 321 (628)
Q Consensus 293 lt~~t~---~li~~~~l~~mk~gailIN~aRg 321 (628)
...... ..+. ..+.++++.+++|+...
T Consensus 203 ~~~~~~~~~~~~~--~~~~l~~~~~v~Dv~y~ 232 (287)
T 1nvt_A 203 IGMYPNIDVEPIV--KAEKLREDMVVMDLIYN 232 (287)
T ss_dssp TTCTTCCSSCCSS--CSTTCCSSSEEEECCCS
T ss_pred CCCCCCCCCCCCC--CHHHcCCCCEEEEeeeC
Confidence 654211 0120 13457889999998764
|
| >1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7 | Back alignment and structure |
|---|
Probab=97.03 E-value=0.00099 Score=55.91 Aligned_cols=62 Identities=18% Similarity=0.112 Sum_probs=47.6
Q ss_pred cEEEEeccCCCCchhhHHhhhhcCCccccceEEeeeecCccEEEEEEeC--CCC-CHHHHHHHhccc
Q 006864 559 NLILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVD--EEP-NQDSLKEIGKVH 622 (628)
Q Consensus 559 ~~Llv~~~D~PGvIa~V~~iL~~~~INIa~m~v~R~~~gg~Al~~i~vD--~~~-~~~~l~~L~~l~ 622 (628)
..|.+..+|+||+++.|+++|+++|+||.+++..+.. +...+.+.++ ... -++++++|+++.
T Consensus 6 ~~l~v~~~DrpGila~vt~~la~~~~NI~~i~~~~~~--~~~~~~i~v~~~~~~~l~~l~~~L~~~~ 70 (91)
T 1zpv_A 6 AIITVVGKDKSGIVAGVSGKIAELGLNIDDISQTVLD--EYFTMMAVVSSDEKQDFTYLRNEFEAFG 70 (91)
T ss_dssp EEEEEEESCCTTHHHHHHHHHHHTTCEEEEEEEEEET--TEEEEEEEEEESSCCCHHHHHHHHHHHH
T ss_pred EEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEeEEEc--CEEEEEEEEEeCCCCCHHHHHHHHHHHH
Confidence 4566778999999999999999999999999998764 6777766663 322 246777777653
|
| >3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A | Back alignment and structure |
|---|
Probab=97.02 E-value=0.00078 Score=69.26 Aligned_cols=92 Identities=17% Similarity=0.189 Sum_probs=63.3
Q ss_pred eecCCeEEEEecChhHHHHHHHHHcCCC-EEEEECCCCChh--HHHHcC-----Cc--c---cCHHHHhccCCEEEEcCC
Q 006864 226 SLVGKTLAVMGFGKVGSEVARRAKGLGM-NVIAHDPYAPAD--KARAVG-----VE--L---VSFDQALATADFISLHMP 292 (628)
Q Consensus 226 ~l~GktiGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~~~~--~a~~~g-----~~--~---~sl~ell~~aDvV~l~~P 292 (628)
.+.||++.|+|.|.+|+.++..|...|. +|.++++..... .++..+ +. . .++++.++++|+|+.++|
T Consensus 124 ~l~~k~vlVlGaGG~g~aia~~L~~~G~~~v~i~~R~~~~a~~la~~~~~~~~~~~i~~~~~~~l~~~l~~~DiVInaTp 203 (283)
T 3jyo_A 124 NAKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVINNAVGREAVVGVDARGIEDVIAAADGVVNATP 203 (283)
T ss_dssp TCCCSEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHHTSCCEEEECSTTHHHHHHHSSEEEECSS
T ss_pred CcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhhcCCceEEEcCHHHHHHHHhcCCEEEECCC
Confidence 5789999999999999999999999998 799999875321 111111 11 1 267788899999999999
Q ss_pred CCcccc--ccccHHHHhcCCCCcEEEEcCC
Q 006864 293 LNPTTS--KIFNDETFAKMKKGVRIVNVAR 320 (628)
Q Consensus 293 lt~~t~--~li~~~~l~~mk~gailIN~aR 320 (628)
..-... -.+. .+.++++.+++|+.-
T Consensus 204 ~Gm~~~~~~pi~---~~~l~~~~~v~DlvY 230 (283)
T 3jyo_A 204 MGMPAHPGTAFD---VSCLTKDHWVGDVVY 230 (283)
T ss_dssp TTSTTSCSCSSC---GGGCCTTCEEEECCC
T ss_pred CCCCCCCCCCCC---HHHhCCCCEEEEecC
Confidence 642111 1122 233566666666654
|
| >3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=97.00 E-value=0.0012 Score=68.89 Aligned_cols=65 Identities=11% Similarity=0.092 Sum_probs=50.7
Q ss_pred CeEEEEecChhHHHHHHHHHcC-CCEEE-EECCCCCh--hHHHHcCCc--ccCHHHHhc--cCCEEEEcCCCC
Q 006864 230 KTLAVMGFGKVGSEVARRAKGL-GMNVI-AHDPYAPA--DKARAVGVE--LVSFDQALA--TADFISLHMPLN 294 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~-G~~V~-~~d~~~~~--~~a~~~g~~--~~sl~ell~--~aDvV~l~~Plt 294 (628)
.++||||+|.||+.+++.++.. ++++. ++|+.... ..+...|+. +.++++++. ++|+|++++|-.
T Consensus 6 ~~igiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~ 78 (330)
T 3e9m_A 6 IRYGIMSTAQIVPRFVAGLRESAQAEVRGIASRRLENAQKMAKELAIPVAYGSYEELCKDETIDIIYIPTYNQ 78 (330)
T ss_dssp EEEEECSCCTTHHHHHHHHHHSSSEEEEEEBCSSSHHHHHHHHHTTCCCCBSSHHHHHHCTTCSEEEECCCGG
T ss_pred EEEEEECchHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHHHcCCCceeCCHHHHhcCCCCCEEEEcCCCH
Confidence 4899999999999999999875 67877 57887532 234455663 458999998 799999999943
|
| >1xea_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, protein structure initiative, NYSGXRC, VCA1048, GFO/IDH/MOCA family oxidoreductase; 2.65A {Vibrio cholerae} SCOP: c.2.1.3 d.81.1.5 | Back alignment and structure |
|---|
Probab=97.00 E-value=0.0013 Score=68.18 Aligned_cols=103 Identities=12% Similarity=0.157 Sum_probs=64.3
Q ss_pred CeEEEEecChhHH-HHHHHHHcC-CCEEEEECCCCCh--hHHHHcCCc--ccCHHHHh-ccCCEEEEcCCCCcccccccc
Q 006864 230 KTLAVMGFGKVGS-EVARRAKGL-GMNVIAHDPYAPA--DKARAVGVE--LVSFDQAL-ATADFISLHMPLNPTTSKIFN 302 (628)
Q Consensus 230 ktiGIIGlG~IG~-~vA~~l~~~-G~~V~~~d~~~~~--~~a~~~g~~--~~sl~ell-~~aDvV~l~~Plt~~t~~li~ 302 (628)
.++||||+|.||+ .+++.++.. +.++.++|+.... ..+...|+. ..+..+++ .++|+|++++|-. ...
T Consensus 3 ~~igiIG~G~ig~~~~~~~l~~~~~~~l~v~d~~~~~~~~~a~~~g~~~~~~~~~~~l~~~~D~V~i~tp~~--~h~--- 77 (323)
T 1xea_A 3 LKIAMIGLGDIAQKAYLPVLAQWPDIELVLCTRNPKVLGTLATRYRVSATCTDYRDVLQYGVDAVMIHAATD--VHS--- 77 (323)
T ss_dssp EEEEEECCCHHHHHTHHHHHTTSTTEEEEEECSCHHHHHHHHHHTTCCCCCSSTTGGGGGCCSEEEECSCGG--GHH---
T ss_pred cEEEEECCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHcCCCccccCHHHHhhcCCCEEEEECCch--hHH---
Confidence 3799999999999 499988765 6788889987522 233455665 34555666 7899999999932 221
Q ss_pred HHHHhcCCCCc-EEEEc-CCCchhcHHHHHHHHhCCC
Q 006864 303 DETFAKMKKGV-RIVNV-ARGGVIDEEALVRALDSGV 337 (628)
Q Consensus 303 ~~~l~~mk~ga-ilIN~-aRg~~vde~aL~~aL~~g~ 337 (628)
+-..+.++.|. +++.- .--.+-+.+.|.++.++..
T Consensus 78 ~~~~~al~~Gk~V~~EKP~~~~~~~~~~l~~~a~~~g 114 (323)
T 1xea_A 78 TLAAFFLHLGIPTFVDKPLAASAQECENLYELAEKHH 114 (323)
T ss_dssp HHHHHHHHTTCCEEEESCSCSSHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCeEEEeCCCcCCHHHHHHHHHHHHhcC
Confidence 12223345554 55542 1223345556777665543
|
| >2glx_A 1,5-anhydro-D-fructose reductase; NADP(H) dependent reductase, rossmann-fold, sugar metabolism, 1,5-anhydro-D-mannitol, oxidoreductase; HET: NDP; 2.20A {Ensifer adhaerens} | Back alignment and structure |
|---|
Probab=97.00 E-value=0.0013 Score=68.14 Aligned_cols=100 Identities=15% Similarity=0.207 Sum_probs=63.0
Q ss_pred eEEEEecChhHHHH-HHHHHcCCCEEE-EECCCCCh--hHHHHcCCc--ccCHHHHhc--cCCEEEEcCCCCcccccccc
Q 006864 231 TLAVMGFGKVGSEV-ARRAKGLGMNVI-AHDPYAPA--DKARAVGVE--LVSFDQALA--TADFISLHMPLNPTTSKIFN 302 (628)
Q Consensus 231 tiGIIGlG~IG~~v-A~~l~~~G~~V~-~~d~~~~~--~~a~~~g~~--~~sl~ell~--~aDvV~l~~Plt~~t~~li~ 302 (628)
++||||+|.||+.+ ++.++..+++++ ++|+.... ..+...|+. +.+++++++ ++|+|++++|-. .. -
T Consensus 2 ~vgiiG~G~~g~~~~~~~l~~~~~~~vav~d~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~D~V~i~tp~~--~h---~ 76 (332)
T 2glx_A 2 RWGLIGASTIAREWVIGAIRATGGEVVSMMSTSAERGAAYATENGIGKSVTSVEELVGDPDVDAVYVSTTNE--LH---R 76 (332)
T ss_dssp EEEEESCCHHHHHTHHHHHHHTTCEEEEEECSCHHHHHHHHHHTTCSCCBSCHHHHHTCTTCCEEEECSCGG--GH---H
T ss_pred eEEEEcccHHHHHhhhHHhhcCCCeEEEEECCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEeCChh--Hh---H
Confidence 79999999999998 777766778876 57887522 223455663 348999997 499999999932 21 1
Q ss_pred HHHHhcCCCCc-EEEEc-CCCchhcHHHHHHHHhC
Q 006864 303 DETFAKMKKGV-RIVNV-ARGGVIDEEALVRALDS 335 (628)
Q Consensus 303 ~~~l~~mk~ga-ilIN~-aRg~~vde~aL~~aL~~ 335 (628)
+-....++.|. +++.- .-...-+.+.|.++.++
T Consensus 77 ~~~~~al~~Gk~v~~ekP~~~~~~~~~~l~~~a~~ 111 (332)
T 2glx_A 77 EQTLAAIRAGKHVLCEKPLAMTLEDAREMVVAARE 111 (332)
T ss_dssp HHHHHHHHTTCEEEECSSSCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCeEEEeCCCcCCHHHHHHHHHHHHH
Confidence 22223355565 33331 12233444556666554
|
| >2ef0_A Ornithine carbamoyltransferase; TTHA1199, thermus thermophil structural genomics, NPPSFA; 2.00A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.98 E-value=0.01 Score=61.50 Aligned_cols=135 Identities=19% Similarity=0.129 Sum_probs=91.0
Q ss_pred HHhcCceEEcCCCCChhhHHHHHHHHHHHHHHchhHHHHHHHcCcccccccceeeecCCeEEEEec-ChhHHHHHHHHHc
Q 006864 172 ATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGKTLAVMGF-GKVGSEVARRAKG 250 (628)
Q Consensus 172 a~~~GI~V~n~p~~~~~avAE~~l~l~L~~~R~i~~~~~~~~~g~W~~~~~~g~~l~GktiGIIGl-G~IG~~vA~~l~~ 250 (628)
|...+|+|+|+-+....++- +++=++.+.+++ | .+.|.+|+++|= +++..+.+..+..
T Consensus 118 a~~~~vPVINa~~~~~HPtQ--aLaDl~Ti~e~~------------------g-~l~gl~ia~vGD~~rva~Sl~~~~~~ 176 (301)
T 2ef0_A 118 ARHAKVPVVNALSDRAHPLQ--ALADLLTLKEVF------------------G-GLAGLEVAWVGDGNNVLNSLLEVAPL 176 (301)
T ss_dssp HHHCSSCEEEEECSSCCHHH--HHHHHHHHHHHH------------------S-CCTTCEEEEESCCCHHHHHHHHHHHH
T ss_pred HHHCCCCEEeCCCCccCchH--HHHHHHHHHHHh------------------C-CcCCcEEEEECCCchhHHHHHHHHHH
Confidence 33457899997665544432 333333333311 2 478999999997 8999999999999
Q ss_pred CCCEEEEECCCC--Ch-hHHHHcCCcc-cCHHHHhccCCEEEEcCCCC------cc------ccccccHHHHhcCCCCcE
Q 006864 251 LGMNVIAHDPYA--PA-DKARAVGVEL-VSFDQALATADFISLHMPLN------PT------TSKIFNDETFAKMKKGVR 314 (628)
Q Consensus 251 ~G~~V~~~d~~~--~~-~~a~~~g~~~-~sl~ell~~aDvV~l~~Plt------~~------t~~li~~~~l~~mk~gai 314 (628)
||++|....|.. +. +......+.. .++++.++.||+|..-.=.. .. ....++.+.++++|++++
T Consensus 177 ~g~~v~~~~P~~~~~~~~~~~~~~~~~~~d~~eav~~aDvvy~~~~~smg~~~~~~~~~~~~~~y~v~~e~l~~a~~~ai 256 (301)
T 2ef0_A 177 AGLKVRVATPKGYEPDPGLLKRANAFFTHDPKEAALGAHALYTDVWTSMGQEAEREKRLRDFQGFQVNGELLKLLRPEGV 256 (301)
T ss_dssp HTCEEEEECCTTCCCCHHHHHHHTCEEESCHHHHHTTCSEEEECCCC--------CHHHHHTTTCCBCHHHHTTSCTTCE
T ss_pred cCCEEEEECCchhcCCHHHHhhceeEEECCHHHHhcCCCEEEecCcccCCcccchhHHHHHhhccccCHHHHHhcCCCcE
Confidence 999999998854 22 2222223543 48999999999998833210 01 135578999999999999
Q ss_pred EEEcC---CCchhcHH
Q 006864 315 IVNVA---RGGVIDEE 327 (628)
Q Consensus 315 lIN~a---Rg~~vde~ 327 (628)
|.-|. ||.=|+.+
T Consensus 257 ~mHplP~~Rg~EI~~e 272 (301)
T 2ef0_A 257 FLHCLPAHYGEETTEE 272 (301)
T ss_dssp EEECSCCCBTTTBCHH
T ss_pred EECCCCCCCCCccCHH
Confidence 99996 55544443
|
| >2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=96.97 E-value=0.0008 Score=69.72 Aligned_cols=110 Identities=15% Similarity=0.125 Sum_probs=65.9
Q ss_pred CeEEEEecChhHHHHHHHHHcCCC--EEEEECCCCChh--HHHHcC--------Ccc--cCHHHHhccCCEEEEcCCCCc
Q 006864 230 KTLAVMGFGKVGSEVARRAKGLGM--NVIAHDPYAPAD--KARAVG--------VEL--VSFDQALATADFISLHMPLNP 295 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~G~--~V~~~d~~~~~~--~a~~~g--------~~~--~sl~ell~~aDvV~l~~Plt~ 295 (628)
++|+|||.|.+|..+|..|...|+ +|..||...... .+.++. ... .+ .+.++.||+|+++++...
T Consensus 1 mkI~VIGaG~vG~~la~~la~~g~~~eV~L~D~~~~~~~~~~~~l~~~~~~~~~~~i~~~~-~~a~~~aDvVIi~~~~~~ 79 (304)
T 2v6b_A 1 MKVGVVGTGFVGSTAAFALVLRGSCSELVLVDRDEDRAQAEAEDIAHAAPVSHGTRVWHGG-HSELADAQVVILTAGANQ 79 (304)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHTTSCCTTSCCEEEEEC-GGGGTTCSEEEECC----
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHhhhhhhhhcCCeEEEECC-HHHhCCCCEEEEcCCCCC
Confidence 479999999999999999998898 999999864211 111111 111 13 357899999999995332
Q ss_pred ccccc-----c--c----H---HHHhcCCCCcEEEEcCCCchhcHHHHHHHHhCCCeeEE
Q 006864 296 TTSKI-----F--N----D---ETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQA 341 (628)
Q Consensus 296 ~t~~l-----i--~----~---~~l~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~ga 341 (628)
..++ + | + +.+....|++++++++-+-=+....+.+.....++.|.
T Consensus 80 -~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~~~vi~~tNP~~~~~~~~~~~~~~~rviG~ 138 (304)
T 2v6b_A 80 -KPGESRLDLLEKNADIFRELVPQITRAAPDAVLLVTSNPVDLLTDLATQLAPGQPVIGS 138 (304)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHHCSSSEEEECSSSHHHHHHHHHHHSCSSCEEEC
T ss_pred -CCCCcHHHHHHhHHHHHHHHHHHHHHhCCCeEEEEecCchHHHHHHHHHhCChhcEEeC
Confidence 1111 0 0 1 23333468899999765444444444444434445443
|
| >3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A* | Back alignment and structure |
|---|
Probab=96.95 E-value=0.002 Score=67.33 Aligned_cols=97 Identities=12% Similarity=0.241 Sum_probs=65.2
Q ss_pred eeeecCCeEEEEecChhHHHHHHHHHcCCC-EEEEECCCCC-hhHHHH--------cCC--ccc---C---HHHHhccCC
Q 006864 224 GVSLVGKTLAVMGFGKVGSEVARRAKGLGM-NVIAHDPYAP-ADKARA--------VGV--ELV---S---FDQALATAD 285 (628)
Q Consensus 224 g~~l~GktiGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~~-~~~a~~--------~g~--~~~---s---l~ell~~aD 285 (628)
+.++.||++.|+|.|.+|++++..|...|. +|.+++|... .+++++ .++ ... + +.+.+.++|
T Consensus 149 ~~~l~gk~~lVlGaGG~g~aia~~L~~~Ga~~V~i~nR~~~~~~~a~~la~~~~~~~~~~~~~~~~~~~~~l~~~l~~aD 228 (315)
T 3tnl_A 149 GHDIIGKKMTICGAGGAATAICIQAALDGVKEISIFNRKDDFYANAEKTVEKINSKTDCKAQLFDIEDHEQLRKEIAESV 228 (315)
T ss_dssp TCCCTTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHHHTCS
T ss_pred CCCccCCEEEEECCChHHHHHHHHHHHCCCCEEEEEECCCchHHHHHHHHHHhhhhcCCceEEeccchHHHHHhhhcCCC
Confidence 456889999999999999999999999998 8999998732 222221 121 122 2 456678999
Q ss_pred EEEEcCCCC--ccc-cccccHHHHhcCCCCcEEEEcCCCc
Q 006864 286 FISLHMPLN--PTT-SKIFNDETFAKMKKGVRIVNVARGG 322 (628)
Q Consensus 286 vV~l~~Plt--~~t-~~li~~~~l~~mk~gailIN~aRg~ 322 (628)
+|+.++|.. +.. ...+. ....++++.+++|+.-..
T Consensus 229 iIINaTp~Gm~~~~~~~p~~--~~~~l~~~~~V~DlvY~P 266 (315)
T 3tnl_A 229 IFTNATGVGMKPFEGETLLP--SADMLRPELIVSDVVYKP 266 (315)
T ss_dssp EEEECSSTTSTTSTTCCSCC--CGGGCCTTCEEEESCCSS
T ss_pred EEEECccCCCCCCCCCCCCC--cHHHcCCCCEEEEeccCC
Confidence 999999964 211 11121 223467777777776443
|
| >1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A* | Back alignment and structure |
|---|
Probab=96.94 E-value=0.002 Score=67.59 Aligned_cols=113 Identities=19% Similarity=0.195 Sum_probs=70.4
Q ss_pred CeEEEEecChhHHHHHHHHHcCCC-EEEEECCCCChhHH--H-------HcC----Ccc-cCHHHHhccCCEEEEcC--C
Q 006864 230 KTLAVMGFGKVGSEVARRAKGLGM-NVIAHDPYAPADKA--R-------AVG----VEL-VSFDQALATADFISLHM--P 292 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~~~~~a--~-------~~g----~~~-~sl~ell~~aDvV~l~~--P 292 (628)
++|+|||.|.+|..+|..|...|+ +|..||........ . ..+ +.. .++++.++.||+|++++ |
T Consensus 10 ~kI~VIGaG~vG~~lA~~la~~g~~~V~L~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~~ea~~~aDiVi~a~g~p 89 (331)
T 1pzg_A 10 KKVAMIGSGMIGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRAEYSYEAALTGADCVIVTAGLT 89 (331)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEEECSHHHHHTTCSEEEECCSCS
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCeEEEEECChhHHHHHHHHHHhhhhccCCCCEEEEeCCHHHHhCCCCEEEEccCCC
Confidence 689999999999999999988887 99999987532111 1 011 122 37888899999999999 6
Q ss_pred CCccc------cccc---c----H---HHHhcCCCCcEEEEcCCCchhcHHHHHHHH--hCCCeeEEE
Q 006864 293 LNPTT------SKIF---N----D---ETFAKMKKGVRIVNVARGGVIDEEALVRAL--DSGVVAQAA 342 (628)
Q Consensus 293 lt~~t------~~li---~----~---~~l~~mk~gailIN~aRg~~vde~aL~~aL--~~g~i~ga~ 342 (628)
..+.. +..+ | + +.+....|.+++++++-.-=+....+.+.- ...++.|.+
T Consensus 90 ~~~g~~~~~~~r~dl~~~n~~i~~~i~~~i~~~~p~a~vi~~tNP~~~~t~~~~~~~~~~~~rviG~g 157 (331)
T 1pzg_A 90 KVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPKTFIIVVTNPLDCMVKVMCEASGVPTNMICGMA 157 (331)
T ss_dssp SCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECCSSHHHHHHHHHHHHCCCGGGEEECC
T ss_pred CCCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEEcCchHHHHHHHHHhcCCChhcEEecc
Confidence 54432 1110 0 1 223334588999988543323333333322 333565553
|
| >2pc6_A Probable acetolactate synthase isozyme III (small; regulatory subunit, structural genomi protein structure initiative; HET: MSE; 2.50A {Nitrosomonas europaea atcc 19718} SCOP: d.58.18.6 d.58.18.6 | Back alignment and structure |
|---|
Probab=96.94 E-value=0.00063 Score=64.53 Aligned_cols=69 Identities=16% Similarity=0.232 Sum_probs=56.9
Q ss_pred cEEEEeccCCCCchhhHHhhhhcCCccccceEEeeeecCccEEEEEEeCCC--CCHHHHHHHhcccCcccc
Q 006864 559 NLILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDEE--PNQDSLKEIGKVHFVARI 627 (628)
Q Consensus 559 ~~Llv~~~D~PGvIa~V~~iL~~~~INIa~m~v~R~~~gg~Al~~i~vD~~--~~~~~l~~L~~l~~v~~v 627 (628)
|.|-+...|+||++++|+.++.+.|+||.++.++.....+.+.|.|.++.. .-+.+.++|.++.+|.+|
T Consensus 5 ~~IsV~veNrpGvL~rI~~lfs~rg~NI~Sl~v~~t~d~g~sritivV~~d~~~leql~kQL~Kl~dV~~V 75 (165)
T 2pc6_A 5 HIISLLMENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVTNGPDEIVEQITKQLNKLIEVVKL 75 (165)
T ss_dssp EEEEEEEECSTTHHHHHHHHHHHHTCCCCEEEEEECSSTTEEEEEEEEEECHHHHHHHHHHHHHSTTEEEE
T ss_pred EEEEEEEeCCCcHHHHHHHHHHHCCCcEEEEEEEecCCCCEEEEEEEEeccHHHHHHHHHHhcCCCCEEEE
Confidence 677778899999999999999999999999999877666788887777633 333677788888888765
|
| >3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A* | Back alignment and structure |
|---|
Probab=96.89 E-value=0.00097 Score=70.08 Aligned_cols=63 Identities=22% Similarity=0.298 Sum_probs=50.2
Q ss_pred CeEEEEecChhHHHHHHHHHcC--CCEEE-EECCCCCh--hHHHHcCCcc-cCHHHHhc--cCCEEEEcCC
Q 006864 230 KTLAVMGFGKVGSEVARRAKGL--GMNVI-AHDPYAPA--DKARAVGVEL-VSFDQALA--TADFISLHMP 292 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~--G~~V~-~~d~~~~~--~~a~~~g~~~-~sl~ell~--~aDvV~l~~P 292 (628)
.++||||+|.||+..++.++.. +++++ ++|+.... ..++..|+.. .+++++++ +.|+|++++|
T Consensus 14 ~rvgiiG~G~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp 84 (354)
T 3q2i_A 14 IRFALVGCGRIANNHFGALEKHADRAELIDVCDIDPAALKAAVERTGARGHASLTDMLAQTDADIVILTTP 84 (354)
T ss_dssp EEEEEECCSTTHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHHCCEEESCHHHHHHHCCCSEEEECSC
T ss_pred ceEEEEcCcHHHHHHHHHHHhCCCCeEEEEEEcCCHHHHHHHHHHcCCceeCCHHHHhcCCCCCEEEECCC
Confidence 4899999999999999999876 78866 67887522 2344567754 48999997 7999999999
|
| >2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11 | Back alignment and structure |
|---|
Probab=96.89 E-value=0.0015 Score=59.90 Aligned_cols=58 Identities=16% Similarity=0.216 Sum_probs=46.5
Q ss_pred cEEEEeccCCCCchhhHHhhhhcCCccccceEEeeeecCccEEEEEEeCCCCCHHHHHHHhc
Q 006864 559 NLILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDEEPNQDSLKEIGK 620 (628)
Q Consensus 559 ~~Llv~~~D~PGvIa~V~~iL~~~~INIa~m~v~R~~~gg~Al~~i~vD~~~~~~~l~~L~~ 620 (628)
+.+.+..+|+||+++++.+.|+++||||.+|...+ .++.+.+++.+++ .+.+.+.|.+
T Consensus 73 svv~v~~~d~pGvla~i~~~L~~~~InI~~~~~~~--~~~~~~~~i~~~d--~~~A~~~L~~ 130 (144)
T 2f06_A 73 DVVGISCPNVPGALAKVLGFLSAEGVFIEYMYSFA--NNNVANVVIRPSN--MDKCIEVLKE 130 (144)
T ss_dssp EEEEEEEESSTTHHHHHHHHHHHTTCCEEEEEEEE--ETTEEEEEEEESC--HHHHHHHHHH
T ss_pred eEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEEEEc--cCCcEEEEEEeCC--HHHHHHHHHH
Confidence 44556789999999999999999999999988875 4567888888863 4566666655
|
| >3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A* | Back alignment and structure |
|---|
Probab=96.88 E-value=0.0018 Score=68.20 Aligned_cols=105 Identities=10% Similarity=0.041 Sum_probs=66.1
Q ss_pred ecCCeEEEEecChhHH-HHHHHHHcC-CCEEE-EECCCCC--hhHHHHcCCcc-cCHHHHhc--cCCEEEEcCCCCcccc
Q 006864 227 LVGKTLAVMGFGKVGS-EVARRAKGL-GMNVI-AHDPYAP--ADKARAVGVEL-VSFDQALA--TADFISLHMPLNPTTS 298 (628)
Q Consensus 227 l~GktiGIIGlG~IG~-~vA~~l~~~-G~~V~-~~d~~~~--~~~a~~~g~~~-~sl~ell~--~aDvV~l~~Plt~~t~ 298 (628)
..-.++||||+|.||+ .+++.++.. +++|. ++|+... ...++..|+.. .+++++++ +.|+|++++|-.. .
T Consensus 25 m~~~rigiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~g~~~~~~~~~ll~~~~~D~V~i~tp~~~--h 102 (350)
T 3rc1_A 25 ANPIRVGVIGCADIAWRRALPALEAEPLTEVTAIASRRWDRAKRFTERFGGEPVEGYPALLERDDVDAVYVPLPAVL--H 102 (350)
T ss_dssp -CCEEEEEESCCHHHHHTHHHHHHHCTTEEEEEEEESSHHHHHHHHHHHCSEEEESHHHHHTCTTCSEEEECCCGGG--H
T ss_pred CCceEEEEEcCcHHHHHHHHHHHHhCCCeEEEEEEcCCHHHHHHHHHHcCCCCcCCHHHHhcCCCCCEEEECCCcHH--H
Confidence 3345899999999999 789988876 78876 5687642 22344567754 48999997 5899999999332 2
Q ss_pred ccccHHHHhcCCCCc-EEEEc-CCCchhcHHHHHHHHhCC
Q 006864 299 KIFNDETFAKMKKGV-RIVNV-ARGGVIDEEALVRALDSG 336 (628)
Q Consensus 299 ~li~~~~l~~mk~ga-ilIN~-aRg~~vde~aL~~aL~~g 336 (628)
.-+ ....++.|. +++.- ---.+-+.+.|.++.++.
T Consensus 103 ~~~---~~~al~aGk~Vl~EKP~a~~~~ea~~l~~~a~~~ 139 (350)
T 3rc1_A 103 AEW---IDRALRAGKHVLAEKPLTTDRPQAERLFAVARER 139 (350)
T ss_dssp HHH---HHHHHHTTCEEEEESSSCSSHHHHHHHHHHHHHT
T ss_pred HHH---HHHHHHCCCcEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 111 222234443 33332 223445566666666554
|
| >3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1} | Back alignment and structure |
|---|
Probab=96.83 E-value=0.003 Score=65.77 Aligned_cols=64 Identities=20% Similarity=0.345 Sum_probs=48.4
Q ss_pred CeEEEEecChhHHHHHHHHH-c-CCCEEE-EECCCCCh--hHHHHcCC-c-ccCHHHHhc--cCCEEEEcCCC
Q 006864 230 KTLAVMGFGKVGSEVARRAK-G-LGMNVI-AHDPYAPA--DKARAVGV-E-LVSFDQALA--TADFISLHMPL 293 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~-~-~G~~V~-~~d~~~~~--~~a~~~g~-~-~~sl~ell~--~aDvV~l~~Pl 293 (628)
.+|||||+|.||+..++.++ . -+++++ ++|+.... ..++..|+ . +.+++++++ ++|+|++++|-
T Consensus 9 ~~v~iiG~G~ig~~~~~~l~~~~~~~~~vav~d~~~~~~~~~a~~~g~~~~~~~~~~~l~~~~~D~V~i~tp~ 81 (346)
T 3cea_A 9 LRAAIIGLGRLGERHARHLVNKIQGVKLVAACALDSNQLEWAKNELGVETTYTNYKDMIDTENIDAIFIVAPT 81 (346)
T ss_dssp EEEEEECCSTTHHHHHHHHHHTCSSEEEEEEECSCHHHHHHHHHTTCCSEEESCHHHHHTTSCCSEEEECSCG
T ss_pred ceEEEEcCCHHHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHHHhCCCcccCCHHHHhcCCCCCEEEEeCCh
Confidence 48999999999999999988 5 478865 57887532 22344566 3 348999997 69999999983
|
| >2i6u_A Otcase, ornithine carbamoyltransferase; X-RAY crystallography, ornithine carbamyoltransferase, carbamoyl phosphate, L- norvaline; 2.20A {Mycobacterium tuberculosis} PDB: 2p2g_A | Back alignment and structure |
|---|
Probab=96.81 E-value=0.022 Score=59.11 Aligned_cols=127 Identities=20% Similarity=0.189 Sum_probs=87.1
Q ss_pred HHhcCceEEcCCCCChhhHHHHHHHHHHHHHHchhHHHHHHHcCcccccccceeeecCCeEEEEecC--hhHHHHHHHHH
Q 006864 172 ATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGKTLAVMGFG--KVGSEVARRAK 249 (628)
Q Consensus 172 a~~~GI~V~n~p~~~~~avAE~~l~l~L~~~R~i~~~~~~~~~g~W~~~~~~g~~l~GktiGIIGlG--~IG~~vA~~l~ 249 (628)
|...+|+|+|+-+....++- +++=++.+.+++ | .+.|.+|+++|=| ++..+.+..+.
T Consensus 112 A~~~~vPVINa~~~~~HPtQ--aLaDl~Ti~e~~------------------g-~l~gl~va~vGD~~~rva~Sl~~~~~ 170 (307)
T 2i6u_A 112 ASVATVPVINALSDEFHPCQ--VLADLQTIAERK------------------G-ALRGLRLSYFGDGANNMAHSLLLGGV 170 (307)
T ss_dssp HHHCSSCEEESCCSSCCHHH--HHHHHHHHHHHH------------------S-CCTTCEEEEESCTTSHHHHHHHHHHH
T ss_pred HhhCCCCEEcCCCCCcCccH--HHHHHHHHHHHh------------------C-CcCCeEEEEECCCCcCcHHHHHHHHH
Confidence 34457999998765544442 333333333311 2 4789999999986 99999999999
Q ss_pred cCCCEEEEECCCC--Chh-H---H----HHcCCc---ccCHHHHhccCCEEEEcCCC-------Ccc-----ccccccHH
Q 006864 250 GLGMNVIAHDPYA--PAD-K---A----RAVGVE---LVSFDQALATADFISLHMPL-------NPT-----TSKIFNDE 304 (628)
Q Consensus 250 ~~G~~V~~~d~~~--~~~-~---a----~~~g~~---~~sl~ell~~aDvV~l~~Pl-------t~~-----t~~li~~~ 304 (628)
.||++|....|.. +.. . + ++.|.. ..++++.++.||+|..-.=. .++ ....++.+
T Consensus 171 ~~g~~v~~~~P~~~~~~~~~~~~~~~~a~~~G~~~~~~~d~~eav~~aDvvy~~~w~smg~~~~~~~~~~~~~~y~v~~~ 250 (307)
T 2i6u_A 171 TAGIHVTVAAPEGFLPDPSVRAAAERRAQDTGASVTVTADAHAAAAGADVLVTDTWTSMGQENDGLDRVKPFRPFQLNSR 250 (307)
T ss_dssp HTTCEEEEECCTTSCCCHHHHHHHHHHHHHHTCCEEEESCHHHHHTTCSEEEECCSSCTTCTTSCCCSSGGGGGGCBCHH
T ss_pred HCCCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEECHHHHhcCCCEEEecceecCCcccchHHHHHHHhhcCCCHH
Confidence 9999999998753 221 1 1 245633 23899999999999983320 011 12456888
Q ss_pred HHhcCCCCcEEEEcC
Q 006864 305 TFAKMKKGVRIVNVA 319 (628)
Q Consensus 305 ~l~~mk~gailIN~a 319 (628)
.++++|++++|.-|.
T Consensus 251 ~l~~a~~~ai~mH~l 265 (307)
T 2i6u_A 251 LLALADSDAIVLHCL 265 (307)
T ss_dssp HHHHSCTTCEEEECS
T ss_pred HHhhcCCCcEEECCC
Confidence 999999999999985
|
| >1iuk_A Hypothetical protein TT1466; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.70A {Thermus thermophilus} SCOP: c.2.1.8 PDB: 1iul_A | Back alignment and structure |
|---|
Probab=96.80 E-value=0.0019 Score=59.39 Aligned_cols=101 Identities=21% Similarity=0.302 Sum_probs=69.5
Q ss_pred CCeEEEEec----ChhHHHHHHHHHcCCCEEEEECCCCChhHHHHcCCccc-CHHHHhccCCEEEEcCCCCccccccccH
Q 006864 229 GKTLAVMGF----GKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELV-SFDQALATADFISLHMPLNPTTSKIFND 303 (628)
Q Consensus 229 GktiGIIGl----G~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~-sl~ell~~aDvV~l~~Plt~~t~~li~~ 303 (628)
-++|+|||. |++|..+++.|+..|++|+..+|..... .-.|+... +++|+-...|++++++|- +.....+.
T Consensus 13 p~~vaVvGas~~~g~~G~~~~~~l~~~G~~v~~vnp~~~~~--~i~G~~~~~sl~el~~~vDlavi~vp~-~~~~~v~~- 88 (140)
T 1iuk_A 13 AKTIAVLGAHKDPSRPAHYVPRYLREQGYRVLPVNPRFQGE--ELFGEEAVASLLDLKEPVDILDVFRPP-SALMDHLP- 88 (140)
T ss_dssp CCEEEEETCCSSTTSHHHHHHHHHHHTTCEEEEECGGGTTS--EETTEECBSSGGGCCSCCSEEEECSCH-HHHTTTHH-
T ss_pred CCEEEEECCCCCCCChHHHHHHHHHHCCCEEEEeCCCcccC--cCCCEEecCCHHHCCCCCCEEEEEeCH-HHHHHHHH-
Confidence 478999999 8999999999999999988888762111 11365544 799988899999999995 44555553
Q ss_pred HHHhcCCCCcEEEEcCCCchhcHHHHHHHHhCCCe
Q 006864 304 ETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVV 338 (628)
Q Consensus 304 ~~l~~mk~gailIN~aRg~~vde~aL~~aL~~g~i 338 (628)
+..+ .....++++.+- . ++.+.+..++..+
T Consensus 89 ~~~~-~gi~~i~~~~g~---~-~~~~~~~a~~~Gi 118 (140)
T 1iuk_A 89 EVLA-LRPGLVWLQSGI---R-HPEFEKALKEAGI 118 (140)
T ss_dssp HHHH-HCCSCEEECTTC---C-CHHHHHHHHHTTC
T ss_pred HHHH-cCCCEEEEcCCc---C-HHHHHHHHHHcCC
Confidence 3333 333456665432 2 4566666665433
|
| >2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum} | Back alignment and structure |
|---|
Probab=96.79 E-value=0.0027 Score=66.57 Aligned_cols=111 Identities=15% Similarity=0.213 Sum_probs=67.1
Q ss_pred CeEEEEecChhHHHHHHHHHcCCC-EEEEECCCCChhHH------HH---c--C--Ccc-cCHHHHhccCCEEEEcC--C
Q 006864 230 KTLAVMGFGKVGSEVARRAKGLGM-NVIAHDPYAPADKA------RA---V--G--VEL-VSFDQALATADFISLHM--P 292 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~~~~~a------~~---~--g--~~~-~sl~ell~~aDvV~l~~--P 292 (628)
++|+|||.|.+|..+|..+...|+ +|..||........ .. . . +.. .++ +.++.||+|++++ |
T Consensus 15 ~kI~ViGaG~vG~~iA~~la~~g~~~V~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~t~d~-~al~~aD~VI~avg~p 93 (328)
T 2hjr_A 15 KKISIIGAGQIGSTIALLLGQKDLGDVYMFDIIEGVPQGKALDLNHCMALIGSPAKIFGENNY-EYLQNSDVVIITAGVP 93 (328)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSTTHHHHHHHHHHHHHHHHTCCCCEEEESCG-GGGTTCSEEEECCSCC
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhHhhccCCCCEEEECCCH-HHHCCCCEEEEcCCCC
Confidence 689999999999999999998888 99999987532111 00 0 1 222 356 7889999999998 4
Q ss_pred CCcc-ccc-cc--c----H---HHHhcCCCCcEEEEcCCCchhcHHHHHHHH--hCCCeeEE
Q 006864 293 LNPT-TSK-IF--N----D---ETFAKMKKGVRIVNVARGGVIDEEALVRAL--DSGVVAQA 341 (628)
Q Consensus 293 lt~~-t~~-li--~----~---~~l~~mk~gailIN~aRg~~vde~aL~~aL--~~g~i~ga 341 (628)
..+. |+. ++ | + +.+....|++++++++-.-=+....+.+.- ...++.|.
T Consensus 94 ~k~g~tr~dl~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~~t~~~~~~~~~~~~rviG~ 155 (328)
T 2hjr_A 94 RKPNMTRSDLLTVNAKIVGSVAENVGKYCPNAFVICITNPLDAMVYYFKEKSGIPANKVCGM 155 (328)
T ss_dssp CCTTCCSGGGHHHHHHHHHHHHHHHHHHCTTCEEEECCSSHHHHHHHHHHHHCCCGGGEEES
T ss_pred CCCCCchhhHHhhhHHHHHHHHHHHHHHCCCeEEEEecCchHHHHHHHHHhcCCChhhEEEe
Confidence 4322 111 10 1 1 122333488999887542222222222221 34466665
|
| >1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A* | Back alignment and structure |
|---|
Probab=96.79 E-value=0.00095 Score=69.57 Aligned_cols=90 Identities=14% Similarity=0.117 Sum_probs=57.9
Q ss_pred CeEEEEecChhHHHHHHHHHcCCC--EEEEECCCCChhHHHHcC----Cc-------c-cCHHHHhccCCEEEEcCCCCc
Q 006864 230 KTLAVMGFGKVGSEVARRAKGLGM--NVIAHDPYAPADKARAVG----VE-------L-VSFDQALATADFISLHMPLNP 295 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~G~--~V~~~d~~~~~~~a~~~g----~~-------~-~sl~ell~~aDvV~l~~Plt~ 295 (628)
++|+|||.|.||.++|..++..|. +|..||...........+ .. . .+..+.++.||+|++++|...
T Consensus 7 ~kI~IIGaG~vG~sla~~l~~~~~~~ev~l~Di~~~~~~~~~~dl~~~~~~~~~~~~i~~~~~~al~~aDvViia~~~~~ 86 (316)
T 1ldn_A 7 ARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWHGDYDDCRDADLVVICAGANQ 86 (316)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEECCGGGTTTCSEEEECCSCCC
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCCcchHHHHHhhHHHHhhhcCCCeEEEcCcHHHhCCCCEEEEcCCCCC
Confidence 689999999999999999986564 899999864221111111 11 0 134567899999999988543
Q ss_pred ccccc-----c--c----H---HHHhcCCCCcEEEEcCC
Q 006864 296 TTSKI-----F--N----D---ETFAKMKKGVRIVNVAR 320 (628)
Q Consensus 296 ~t~~l-----i--~----~---~~l~~mk~gailIN~aR 320 (628)
. .++ + | . +.+....|++++++++-
T Consensus 87 ~-~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~~iv~tN 124 (316)
T 1ldn_A 87 K-PGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVATN 124 (316)
T ss_dssp C-TTTCSGGGHHHHHHHHHHHHHHHHHHTCCSEEEECSS
T ss_pred C-CCCCHHHHHHcChHHHHHHHHHHHHHCCCCEEEEeCC
Confidence 1 211 1 0 1 12233357888888754
|
| >1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A* | Back alignment and structure |
|---|
Probab=96.78 E-value=0.0029 Score=66.15 Aligned_cols=65 Identities=18% Similarity=0.265 Sum_probs=48.0
Q ss_pred CeEEEEecChhHHHHHHHHHcCCC-EEEEECCCCChhHH--HH-------c--C--Ccc-cCHHHHhccCCEEEEcC--C
Q 006864 230 KTLAVMGFGKVGSEVARRAKGLGM-NVIAHDPYAPADKA--RA-------V--G--VEL-VSFDQALATADFISLHM--P 292 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~~~~~a--~~-------~--g--~~~-~sl~ell~~aDvV~l~~--P 292 (628)
++|+|||.|.+|..+|..+...|+ +|..||........ .. . . +.. .++ +.++.||+|++++ |
T Consensus 5 ~kI~VIGaG~vG~~ia~~la~~g~~~v~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~t~d~-~al~~aD~Vi~a~g~p 83 (322)
T 1t2d_A 5 AKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGSNTY-DDLAGADVVIVTAGFT 83 (322)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEEECCG-GGGTTCSEEEECCSCS
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhhhhcCCCcEEEECCCH-HHhCCCCEEEEeCCCC
Confidence 589999999999999999998887 99999976532110 00 1 1 122 356 7799999999998 5
Q ss_pred CCc
Q 006864 293 LNP 295 (628)
Q Consensus 293 lt~ 295 (628)
..+
T Consensus 84 ~k~ 86 (322)
T 1t2d_A 84 KAP 86 (322)
T ss_dssp SCT
T ss_pred CCC
Confidence 443
|
| >3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics; 2.00A {Streptococcus agalactiae serogroup V} | Back alignment and structure |
|---|
Probab=96.78 E-value=0.0023 Score=66.54 Aligned_cols=102 Identities=14% Similarity=0.053 Sum_probs=62.4
Q ss_pred CeEEEEecChhHHHHHHHHHcC-CCEEE-EECCCCCh--hHHHHcCCc--ccCHHHHhc--cCCEEEEcCCCCccccccc
Q 006864 230 KTLAVMGFGKVGSEVARRAKGL-GMNVI-AHDPYAPA--DKARAVGVE--LVSFDQALA--TADFISLHMPLNPTTSKIF 301 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~-G~~V~-~~d~~~~~--~~a~~~g~~--~~sl~ell~--~aDvV~l~~Plt~~t~~li 301 (628)
.++||||+|.||+..++.++.. ++++. ++|+.... ..+...|+. +.+++++++ +.|+|++++|-.. ..
T Consensus 6 ~rigiiG~G~ig~~~~~~l~~~~~~~~~av~d~~~~~~~~~a~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~--h~-- 81 (329)
T 3evn_A 6 VRYGVVSTAKVAPRFIEGVRLAGNGEVVAVSSRTLESAQAFANKYHLPKAYDKLEDMLADESIDVIYVATINQD--HY-- 81 (329)
T ss_dssp EEEEEEBCCTTHHHHHHHHHHHCSEEEEEEECSCSSTTCC---CCCCSCEESCHHHHHTCTTCCEEEECSCGGG--HH--
T ss_pred eEEEEEechHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEECCCcHH--HH--
Confidence 4899999999999999998765 56666 56876532 334455663 458999998 7999999999432 21
Q ss_pred cHHHHhcCCCCcE-EEEc-CCCchhcHHHHHHHHhCC
Q 006864 302 NDETFAKMKKGVR-IVNV-ARGGVIDEEALVRALDSG 336 (628)
Q Consensus 302 ~~~~l~~mk~gai-lIN~-aRg~~vde~aL~~aL~~g 336 (628)
+-....++.|.- ++.- ---.+-+.+.|.++.++.
T Consensus 82 -~~~~~al~aGk~Vl~EKP~a~~~~e~~~l~~~a~~~ 117 (329)
T 3evn_A 82 -KVAKAALLAGKHVLVEKPFTLTYDQANELFALAESC 117 (329)
T ss_dssp -HHHHHHHHTTCEEEEESSCCSSHHHHHHHHHHHHHT
T ss_pred -HHHHHHHHCCCeEEEccCCcCCHHHHHHHHHHHHHc
Confidence 112223444433 3221 122344555666665554
|
| >3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom protein structure initiative, PSI, NEW YORK structural GENO research consortium; HET: NAD; 1.95A {Listeria innocua} | Back alignment and structure |
|---|
Probab=96.76 E-value=0.0015 Score=68.97 Aligned_cols=64 Identities=25% Similarity=0.402 Sum_probs=50.2
Q ss_pred CeEEEEecChhHHHHHHHHHcC-CCEEEE-ECCCCCh-hHHHHcCCcc-cCHHHHhc--cCCEEEEcCCC
Q 006864 230 KTLAVMGFGKVGSEVARRAKGL-GMNVIA-HDPYAPA-DKARAVGVEL-VSFDQALA--TADFISLHMPL 293 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~-G~~V~~-~d~~~~~-~~a~~~g~~~-~sl~ell~--~aDvV~l~~Pl 293 (628)
.++||||+|.||+..++.++.. ++++.+ +|+.... +.+...|+.. .+++++++ +.|+|++++|-
T Consensus 6 ~~vgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~a~~~g~~~~~~~~~ll~~~~~D~V~i~tp~ 75 (359)
T 3e18_A 6 YQLVIVGYGGMGSYHVTLASAADNLEVHGVFDILAEKREAAAQKGLKIYESYEAVLADEKVDAVLIATPN 75 (359)
T ss_dssp EEEEEECCSHHHHHHHHHHHTSTTEEEEEEECSSHHHHHHHHTTTCCBCSCHHHHHHCTTCCEEEECSCG
T ss_pred CcEEEECcCHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHHhcCCceeCCHHHHhcCCCCCEEEEcCCc
Confidence 4799999999999999999877 788765 6876422 2344556654 48999998 79999999993
|
| >1pg5_A Aspartate carbamoyltransferase; 2.60A {Sulfolobus acidocaldarius} SCOP: c.78.1.1 c.78.1.1 PDB: 2be9_A* | Back alignment and structure |
|---|
Probab=96.76 E-value=0.01 Score=61.46 Aligned_cols=94 Identities=15% Similarity=0.102 Sum_probs=71.2
Q ss_pred eecCCeEEEEec---ChhHHHHHHHHHcC-CCEEEEECCCC---ChhHHHHcCCcc---cCHHHHhccCCEEEEcCCCCc
Q 006864 226 SLVGKTLAVMGF---GKVGSEVARRAKGL-GMNVIAHDPYA---PADKARAVGVEL---VSFDQALATADFISLHMPLNP 295 (628)
Q Consensus 226 ~l~GktiGIIGl---G~IG~~vA~~l~~~-G~~V~~~d~~~---~~~~a~~~g~~~---~sl~ell~~aDvV~l~~Plt~ 295 (628)
.+.|++|+++|= |++..+++..+..| |++|....|.. +....++.|... .+++++++.||+|..-.=-.+
T Consensus 146 ~l~gl~va~vGD~~~~rva~Sl~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~g~~~~~~~d~~eav~~aDvvyt~~~q~e 225 (299)
T 1pg5_A 146 TIDGLVFALLGDLKYARTVNSLLRILTRFRPKLVYLISPQLLRARKEILDELNYPVKEVENPFEVINEVDVLYVTRIQKE 225 (299)
T ss_dssp CSTTCEEEEEECCSSCHHHHHHHHHGGGSCCSEEEEECCGGGCCCHHHHTTCCSCEEEESCGGGTGGGCSEEEEECCCST
T ss_pred CcCCcEEEEECCCCCCchHHHHHHHHHhCCCCEEEEECCchhcCCHHHHHHcCCeEEEeCCHHHHhcCCCEEEeCCcccc
Confidence 478999999998 59999999999999 99999998753 222234456542 379999999999988654321
Q ss_pred cc-----------cccccHHHHhcCCCCcEEEEcC
Q 006864 296 TT-----------SKIFNDETFAKMKKGVRIVNVA 319 (628)
Q Consensus 296 ~t-----------~~li~~~~l~~mk~gailIN~a 319 (628)
.- ...++.+.++++|++++|.-|.
T Consensus 226 r~~~~~~~~~~~~~y~v~~~~l~~a~~~ai~mH~l 260 (299)
T 1pg5_A 226 RFVDEMEYEKIKGSYIVSLDLANKMKKDSIILHPL 260 (299)
T ss_dssp TSSCHHHHHHHGGGGSBCHHHHHTSCTTCEEECCS
T ss_pred cccCHHHHHHhhcCcccCHHHHHhcCCCCEEECCC
Confidence 10 2456888888888898888885
|
| >2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes} | Back alignment and structure |
|---|
Probab=96.76 E-value=0.0023 Score=68.45 Aligned_cols=96 Identities=22% Similarity=0.229 Sum_probs=75.4
Q ss_pred ceeeecCCeEEEEecChhHHHHHHHHHcCCC-EEEEECCCC--Ch-----------hHHHHcCC--cccCHHHHhccCCE
Q 006864 223 VGVSLVGKTLAVMGFGKVGSEVARRAKGLGM-NVIAHDPYA--PA-----------DKARAVGV--ELVSFDQALATADF 286 (628)
Q Consensus 223 ~g~~l~GktiGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~--~~-----------~~a~~~g~--~~~sl~ell~~aDv 286 (628)
.|..+...+|.|+|.|..|..+|+.+.++|. +|+.+|+.. .. ..+..... ...+|.|.++.+|+
T Consensus 182 ~g~~l~d~kVVi~GAGaAG~~iA~ll~~~Ga~~I~v~D~~Gli~~~R~~~L~~~k~~fa~~~~~~~~~~~L~eav~~ADV 261 (398)
T 2a9f_A 182 LKKSLDEVSIVVNGGGSAGLSITRKLLAAGATKVTVVDKFGIINEQEAAQLAPHHLDIAKVTNREFKSGTLEDALEGADI 261 (398)
T ss_dssp TTCCTTSCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTEECCTTCCCSCCC---CHHHHHSCTTCCCSCSHHHHTTCS
T ss_pred hCCCCCccEEEEECCCHHHHHHHHHHHHcCCCeEEEEECCCcccCCccccchHHHHHHhhccCcccchhhHHHHhccCCE
Confidence 4667888999999999999999999999999 999998751 11 11111110 12369999999999
Q ss_pred EEEcCCCCccccccccHHHHhcCCCCcEEEEcCCCch
Q 006864 287 ISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGV 323 (628)
Q Consensus 287 V~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~~ 323 (628)
++=.- +-+++.++.++.|+++++|+.+++...
T Consensus 262 ~IG~S-----apgl~T~EmVk~Ma~~pIIfalsNPt~ 293 (398)
T 2a9f_A 262 FIGVS-----APGVLKAEWISKMAARPVIFAMANPIP 293 (398)
T ss_dssp EEECC-----STTCCCHHHHHTSCSSCEEEECCSSSC
T ss_pred EEecC-----CCCCCCHHHHHhhCCCCEEEECCCCCc
Confidence 87652 358999999999999999999998653
|
| >4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea} | Back alignment and structure |
|---|
Probab=96.76 E-value=0.003 Score=69.07 Aligned_cols=101 Identities=20% Similarity=0.284 Sum_probs=73.1
Q ss_pred eeeecCCeEEEEecC----------hhHHHHHHHHHcCCCEEEEECCCCChhHHHHc-CCccc-CHHHHhccCCEEEEcC
Q 006864 224 GVSLVGKTLAVMGFG----------KVGSEVARRAKGLGMNVIAHDPYAPADKARAV-GVELV-SFDQALATADFISLHM 291 (628)
Q Consensus 224 g~~l~GktiGIIGlG----------~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~-g~~~~-sl~ell~~aDvV~l~~ 291 (628)
+..+.|++|+|+|+. .-...+++.|...|++|.+|||+...+....+ ++.++ ++++.++.||+|++++
T Consensus 317 ~~~~~~~~v~vlGlafK~~~dD~ReSp~~~i~~~L~~~g~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~ad~vvi~t 396 (446)
T 4a7p_A 317 GGDVRGKTVGILGLTFKPNTDDMRDAPSLSIIAALQDAGATVKAYDPEGVEQASKMLTDVEFVENPYAAADGADALVIVT 396 (446)
T ss_dssp TSCCTTCEEEEECCSSSTTSCCCTTCSHHHHHHHHHHTSCEEEEECSSCHHHHGGGCSSCCBCSCHHHHHTTBSEEEECS
T ss_pred cccCCCCEEEEEEEEeCCCCcccccChHHHHHHHHHHCCCEEEEECCCCCHhHHHhcCCceEecChhHHhcCCCEEEEee
Confidence 557899999999997 56789999999999999999999753322233 45554 7899999999999998
Q ss_pred CCCccccccccHHHHh-cCCCCcEEEEcCCCchhcHHHH
Q 006864 292 PLNPTTSKIFNDETFA-KMKKGVRIVNVARGGVIDEEAL 329 (628)
Q Consensus 292 Plt~~t~~li~~~~l~-~mk~gailIN~aRg~~vde~aL 329 (628)
+-. +-+. ++-+.+. .|+ +.+|+|+ |+ +.|.+.+
T Consensus 397 ~~~-~f~~-~d~~~~~~~~~-~~~i~D~-r~-~~~~~~~ 430 (446)
T 4a7p_A 397 EWD-AFRA-LDLTRIKNSLK-SPVLVDL-RN-IYPPAEL 430 (446)
T ss_dssp CCT-TTTS-CCHHHHHTTBS-SCBEECS-SC-CSCHHHH
T ss_pred CCH-Hhhc-CCHHHHHHhcC-CCEEEEC-CC-CCCHHHH
Confidence 733 2222 4555544 465 4678885 43 4565544
|
| >2d59_A Hypothetical protein PH1109; COA binding, structural genomics; 1.65A {Pyrococcus horikoshii} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* 3qa9_A 3q9n_A* 3q9u_A* | Back alignment and structure |
|---|
Probab=96.75 E-value=0.0022 Score=59.16 Aligned_cols=99 Identities=13% Similarity=0.113 Sum_probs=69.2
Q ss_pred CCeEEEEec----ChhHHHHHHHHHcCCCEEEEECCCCChhHHHHcCCccc-CHHHHhccCCEEEEcCCCCccccccccH
Q 006864 229 GKTLAVMGF----GKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELV-SFDQALATADFISLHMPLNPTTSKIFND 303 (628)
Q Consensus 229 GktiGIIGl----G~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~-sl~ell~~aDvV~l~~Plt~~t~~li~~ 303 (628)
-++|+|||. |++|..+++.|+..|++|+..+|... .-.|+... +++++....|++++++|- +....++ +
T Consensus 22 p~~iaVVGas~~~g~~G~~~~~~l~~~G~~v~~Vnp~~~----~i~G~~~y~sl~~l~~~vDlvvi~vp~-~~~~~vv-~ 95 (144)
T 2d59_A 22 YKKIALVGASPKPERDANIVMKYLLEHGYDVYPVNPKYE----EVLGRKCYPSVLDIPDKIEVVDLFVKP-KLTMEYV-E 95 (144)
T ss_dssp CCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCS----EETTEECBSSGGGCSSCCSEEEECSCH-HHHHHHH-H
T ss_pred CCEEEEEccCCCCCchHHHHHHHHHHCCCEEEEECCCCC----eECCeeccCCHHHcCCCCCEEEEEeCH-HHHHHHH-H
Confidence 579999999 79999999999999999888888642 11366544 799998899999999994 4444444 2
Q ss_pred HHHhcCCCCcEEEEcCCCchhcHHHHHHHHhCCCe
Q 006864 304 ETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVV 338 (628)
Q Consensus 304 ~~l~~mk~gailIN~aRg~~vde~aL~~aL~~g~i 338 (628)
+..+ ....++++.. |. .++.+.++.++..+
T Consensus 96 ~~~~-~gi~~i~~~~--g~--~~~~l~~~a~~~Gi 125 (144)
T 2d59_A 96 QAIK-KGAKVVWFQY--NT--YNREASKKADEAGL 125 (144)
T ss_dssp HHHH-HTCSEEEECT--TC--CCHHHHHHHHHTTC
T ss_pred HHHH-cCCCEEEECC--Cc--hHHHHHHHHHHcCC
Confidence 3333 3334565543 32 25667777766544
|
| >3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.04A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=96.75 E-value=0.0016 Score=68.23 Aligned_cols=64 Identities=17% Similarity=0.259 Sum_probs=50.0
Q ss_pred CeEEEEecChhHHHHHHHHHcC-CCEEE-EECCCCCh--hHHHHcCCc--ccCHHHHhc--cCCEEEEcCCC
Q 006864 230 KTLAVMGFGKVGSEVARRAKGL-GMNVI-AHDPYAPA--DKARAVGVE--LVSFDQALA--TADFISLHMPL 293 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~-G~~V~-~~d~~~~~--~~a~~~g~~--~~sl~ell~--~aDvV~l~~Pl 293 (628)
.+|||||+|.||+..++.++.. +++++ ++|+.... ..+...++. +.+++++++ ++|+|++++|-
T Consensus 3 ~rvgiIG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~ 74 (344)
T 3ezy_A 3 LRIGVIGLGRIGTIHAENLKMIDDAILYAISDVREDRLREMKEKLGVEKAYKDPHELIEDPNVDAVLVCSST 74 (344)
T ss_dssp EEEEEECCSHHHHHHHHHGGGSTTEEEEEEECSCHHHHHHHHHHHTCSEEESSHHHHHHCTTCCEEEECSCG
T ss_pred eEEEEEcCCHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHhCCCceeCCHHHHhcCCCCCEEEEcCCC
Confidence 3799999999999999999875 67877 57886422 234455653 458999998 89999999993
|
| >3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A* | Back alignment and structure |
|---|
Probab=96.69 E-value=0.0016 Score=69.35 Aligned_cols=65 Identities=23% Similarity=0.393 Sum_probs=47.5
Q ss_pred eeecCCeEEEEecChhHHHHHHHHHcCCCEEEEECCCCChhHHHHcC----CcccC---HHHHhccCCEEEE
Q 006864 225 VSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVG----VELVS---FDQALATADFISL 289 (628)
Q Consensus 225 ~~l~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g----~~~~s---l~ell~~aDvV~l 289 (628)
.-+.||||+|+|.|.+|+.+++.++.+|++|+++|++.......... ..+.+ +.++++++|+|+.
T Consensus 10 ~~~~~k~IlIlG~G~~g~~la~aa~~~G~~vi~~d~~~~~~~~~~ad~~~~~~~~d~~~l~~~~~~~dvI~~ 81 (389)
T 3q2o_A 10 IILPGKTIGIIGGGQLGRMMALAAKEMGYKIAVLDPTKNSPCAQVADIEIVASYDDLKAIQHLAEISDVVTY 81 (389)
T ss_dssp CCCTTSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSTTCTTTTTCSEEEECCTTCHHHHHHHHHTCSEEEE
T ss_pred cCCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCCCchHHhCCceEecCcCCHHHHHHHHHhCCEeee
Confidence 34789999999999999999999999999999999865221111000 11222 6678888998854
|
| >3r7f_A Aspartate carbamoyltransferase; aspartate transcarbamoylase, carbamoyl phosphate, transferas catalytic cycle; 2.10A {Bacillus subtilis} PDB: 3r7d_A 3r7l_A* 2at2_A | Back alignment and structure |
|---|
Probab=96.67 E-value=0.0079 Score=62.37 Aligned_cols=92 Identities=24% Similarity=0.300 Sum_probs=67.8
Q ss_pred eecCCeEEEEecC---hhHHHHHHHHHcCCCEEEEECCCC-ChhHHHHcCCcccCHHHHhccCCEEEEcCCCCcc-----
Q 006864 226 SLVGKTLAVMGFG---KVGSEVARRAKGLGMNVIAHDPYA-PADKARAVGVELVSFDQALATADFISLHMPLNPT----- 296 (628)
Q Consensus 226 ~l~GktiGIIGlG---~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~g~~~~sl~ell~~aDvV~l~~Plt~~----- 296 (628)
.+.|++|+++|=| ++..+.+..+..||++|.+..|.. ..+. ...| ...++++.++.||+|..-.--.+.
T Consensus 144 ~l~glkva~vGD~~~~rva~Sl~~~~~~~G~~v~~~~P~~~~~~~-~~~g-~~~d~~eav~~aDvvyt~~~q~er~~~~~ 221 (304)
T 3r7f_A 144 TFKGLTVSIHGDIKHSRVARSNAEVLTRLGARVLFSGPSEWQDEE-NTFG-TYVSMDEAVESSDVVMLLRIQNERHQSAV 221 (304)
T ss_dssp CCTTCEEEEESCCTTCHHHHHHHHHHHHTTCEEEEESCGGGSCTT-CSSC-EECCHHHHHHHCSEEEECCCCTTTCCSSC
T ss_pred CCCCCEEEEEcCCCCcchHHHHHHHHHHcCCEEEEECCCccCcch-hhcC-ccCCHHHHhCCCCEEEeccchhhccccch
Confidence 4789999999975 699999999999999999988743 1111 1223 345899999999999884311110
Q ss_pred ------ccccccHHHHhcCCCCcEEEEcC
Q 006864 297 ------TSKIFNDETFAKMKKGVRIVNVA 319 (628)
Q Consensus 297 ------t~~li~~~~l~~mk~gailIN~a 319 (628)
....++.+.++++|++++|.-|.
T Consensus 222 ~~~~~~~~y~v~~~~l~~a~~~ai~mHcl 250 (304)
T 3r7f_A 222 SQEGYLNKYGLTVERAERMKRHAIIMHPA 250 (304)
T ss_dssp CSTTHHHHHSBCHHHHTTSCTTCEEECCS
T ss_pred hHHHHhCCCccCHHHHhhcCCCCEEECCC
Confidence 12347888888899999998885
|
| >3bio_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, MCSG, PSI-2, GFO/IDH/MO family, protein structure initiative; HET: MSE EPE; 1.80A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=96.67 E-value=0.0015 Score=67.53 Aligned_cols=99 Identities=12% Similarity=0.145 Sum_probs=60.8
Q ss_pred CeEEEEecChhHHHHHHHHHc-CCCEEE-EECCCCChhHHHHcCCcc---cCHHHHhccCCEEEEcCCCCccccccccHH
Q 006864 230 KTLAVMGFGKVGSEVARRAKG-LGMNVI-AHDPYAPADKARAVGVEL---VSFDQALATADFISLHMPLNPTTSKIFNDE 304 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~-~G~~V~-~~d~~~~~~~a~~~g~~~---~sl~ell~~aDvV~l~~Plt~~t~~li~~~ 304 (628)
.+|||||+|+||+.+++.++. -++++. ++|+.... ++..|+.. .++.++ .++|+|++|+|-.. . -+.
T Consensus 10 irv~IIG~G~iG~~~~~~l~~~~~~elvav~d~~~~~--~~~~g~~~~~~~~l~~~-~~~DvViiatp~~~--h---~~~ 81 (304)
T 3bio_A 10 IRAAIVGYGNIGRYALQALREAPDFEIAGIVRRNPAE--VPFELQPFRVVSDIEQL-ESVDVALVCSPSRE--V---ERT 81 (304)
T ss_dssp EEEEEECCSHHHHHHHHHHHHCTTEEEEEEECC---------CCTTSCEESSGGGS-SSCCEEEECSCHHH--H---HHH
T ss_pred CEEEEECChHHHHHHHHHHhcCCCCEEEEEEcCCHHH--HHHcCCCcCCHHHHHhC-CCCCEEEECCCchh--h---HHH
Confidence 489999999999999999986 468887 58876432 22256542 244444 68999999998332 1 122
Q ss_pred HHhcCCCCcEEEEcCC--C-chhcHHHHHHHHhCC
Q 006864 305 TFAKMKKGVRIVNVAR--G-GVIDEEALVRALDSG 336 (628)
Q Consensus 305 ~l~~mk~gailIN~aR--g-~~vde~aL~~aL~~g 336 (628)
....++.|.-+++..- + ...+.+.|.++.++.
T Consensus 82 ~~~al~aG~~Vi~ekP~~a~~~~~~~~l~~~a~~~ 116 (304)
T 3bio_A 82 ALEILKKGICTADSFDIHDGILALRRSLGDAAGKS 116 (304)
T ss_dssp HHHHHTTTCEEEECCCCGGGHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCeEEECCCCCCCCHHHHHHHHHHHHhC
Confidence 3344677877776432 1 223345666666553
|
| >3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=96.67 E-value=0.002 Score=62.87 Aligned_cols=87 Identities=14% Similarity=0.205 Sum_probs=56.5
Q ss_pred CeEEEEecChhHHHHHHHHHcCCCEEEEECCCCCh-hH-HHHcCCccc-----C---HHHH-hccCCEEEEcCCCCcccc
Q 006864 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPA-DK-ARAVGVELV-----S---FDQA-LATADFISLHMPLNPTTS 298 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~-a~~~g~~~~-----s---l~el-l~~aDvV~l~~Plt~~t~ 298 (628)
+++.|+|+|.+|+.+|+.|...|.+|+++|+.... +. ....++..+ + |+++ +.+||+|++++|-.. .
T Consensus 1 M~iiIiG~G~~G~~la~~L~~~g~~v~vid~~~~~~~~l~~~~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~d~--~ 78 (218)
T 3l4b_C 1 MKVIIIGGETTAYYLARSMLSRKYGVVIINKDRELCEEFAKKLKATIIHGDGSHKEILRDAEVSKNDVVVILTPRDE--V 78 (218)
T ss_dssp CCEEEECCHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHSSSEEEESCTTSHHHHHHHTCCTTCEEEECCSCHH--H
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHcCCeEEEcCCCCHHHHHhcCcccCCEEEEecCCcH--H
Confidence 47899999999999999999999999999986422 11 223454321 2 4444 678999999998443 2
Q ss_pred ccccHHHHhcCCCCcEEEEc
Q 006864 299 KIFNDETFAKMKKGVRIVNV 318 (628)
Q Consensus 299 ~li~~~~l~~mk~gailIN~ 318 (628)
+++-......+.+...+|-.
T Consensus 79 n~~~~~~a~~~~~~~~iia~ 98 (218)
T 3l4b_C 79 NLFIAQLVMKDFGVKRVVSL 98 (218)
T ss_dssp HHHHHHHHHHTSCCCEEEEC
T ss_pred HHHHHHHHHHHcCCCeEEEE
Confidence 22223333333344455543
|
| >1vlv_A Otcase, ornithine carbamoyltransferase; TM1097, structural genomics, protein structure initiative, PSI, joint center for structu genomics; 2.25A {Thermotoga maritima} SCOP: c.78.1.1 c.78.1.1 | Back alignment and structure |
|---|
Probab=96.64 E-value=0.02 Score=59.93 Aligned_cols=127 Identities=20% Similarity=0.242 Sum_probs=86.4
Q ss_pred HHhcCceEEcCCCCChhhHHHHHHHHHHHHHHchhHHHHHHHcCcccccccceeeecCCeEEEEecC--hhHHHHHHHHH
Q 006864 172 ATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGKTLAVMGFG--KVGSEVARRAK 249 (628)
Q Consensus 172 a~~~GI~V~n~p~~~~~avAE~~l~l~L~~~R~i~~~~~~~~~g~W~~~~~~g~~l~GktiGIIGlG--~IG~~vA~~l~ 249 (628)
|...+|+|+|+-+....++- +++=++.+.++ .| .+.|.+|+++|=| ++..+.+..+.
T Consensus 131 A~~~~vPVINa~~~~~HPtQ--aLaDl~Ti~e~------------------~g-~l~gl~va~vGD~~~rva~Sl~~~~~ 189 (325)
T 1vlv_A 131 AEYSGVPVYNGLTDEFHPTQ--ALADLMTIEEN------------------FG-RLKGVKVVFMGDTRNNVATSLMIACA 189 (325)
T ss_dssp HHHHCSCEEESCCSSCCHHH--HHHHHHHHHHH------------------HS-CSTTCEEEEESCTTSHHHHHHHHHHH
T ss_pred HHhCCCCEEeCCCCCCCcHH--HHHHHHHHHHH------------------hC-CcCCcEEEEECCCCcCcHHHHHHHHH
Confidence 33447999998665444432 23333333331 12 4789999999996 99999999999
Q ss_pred cCCCEEEEECCCC---ChhH---H----HHcCCc---ccCHHHHhccCCEEEEcCCC-------Ccc-----ccccccHH
Q 006864 250 GLGMNVIAHDPYA---PADK---A----RAVGVE---LVSFDQALATADFISLHMPL-------NPT-----TSKIFNDE 304 (628)
Q Consensus 250 ~~G~~V~~~d~~~---~~~~---a----~~~g~~---~~sl~ell~~aDvV~l~~Pl-------t~~-----t~~li~~~ 304 (628)
.||++|.+..|.. +.+. + ++.|.. ..++++++++||+|..-.=. .++ ....++.+
T Consensus 190 ~~G~~v~~~~P~~~~p~~~~~~~~~~~a~~~G~~v~~~~d~~eav~~aDvvyt~~w~smg~~~~~~~~~~~~~~y~v~~e 269 (325)
T 1vlv_A 190 KMGMNFVACGPEELKPRSDVFKRCQEIVKETDGSVSFTSNLEEALAGADVVYTDVWASMGEEDKEKERMALLKPYQVNER 269 (325)
T ss_dssp HTTCEEEEESCGGGCCCHHHHHHHHHHHHHHCCEEEEESCHHHHHTTCSEEEECCCC----------CHHHHGGGCBCHH
T ss_pred HCCCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEcCHHHHHccCCEEEeccccccccccchHhHHHHHhhcCCCHH
Confidence 9999999988753 2211 1 255643 23899999999999883321 011 13557889
Q ss_pred HHhcC-CCCcEEEEcC
Q 006864 305 TFAKM-KKGVRIVNVA 319 (628)
Q Consensus 305 ~l~~m-k~gailIN~a 319 (628)
.++++ |++++|.-|.
T Consensus 270 ll~~a~k~dai~mH~L 285 (325)
T 1vlv_A 270 VMEMTGKSETIFMHCL 285 (325)
T ss_dssp HHHTTCCTTCEEEECS
T ss_pred HHHhccCCCeEEECCC
Confidence 99999 9999999985
|
| >3c1a_A Putative oxidoreductase; ZP_00056571.1, oxidoreductase FAM binding rossmann fold, structural genomics; HET: MSE PG4 PGE; 1.85A {Magnetospirillum magnetotacticum} | Back alignment and structure |
|---|
Probab=96.63 E-value=0.0013 Score=68.08 Aligned_cols=99 Identities=19% Similarity=0.291 Sum_probs=61.0
Q ss_pred CeEEEEecChhHHHHHHHHHcC-CCEEE-EECCCCChhHHHHcC--Cc-ccCHHHHhc--cCCEEEEcCCCCcccccccc
Q 006864 230 KTLAVMGFGKVGSEVARRAKGL-GMNVI-AHDPYAPADKARAVG--VE-LVSFDQALA--TADFISLHMPLNPTTSKIFN 302 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~-G~~V~-~~d~~~~~~~a~~~g--~~-~~sl~ell~--~aDvV~l~~Plt~~t~~li~ 302 (628)
.+|||||+|.||+.+++.++.. +++++ ++|+.. +.++... +. +.+++++++ ++|+|++++|-.. . -
T Consensus 11 ~~igiIG~G~~g~~~~~~l~~~~~~~~v~v~d~~~--~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~tp~~~--h---~ 83 (315)
T 3c1a_A 11 VRLALIGAGRWGKNYIRTIAGLPGAALVRLASSNP--DNLALVPPGCVIESDWRSVVSAPEVEAVIIATPPAT--H---A 83 (315)
T ss_dssp EEEEEEECTTTTTTHHHHHHHCTTEEEEEEEESCH--HHHTTCCTTCEEESSTHHHHTCTTCCEEEEESCGGG--H---H
T ss_pred ceEEEECCcHHHHHHHHHHHhCCCcEEEEEEeCCH--HHHHHHHhhCcccCCHHHHhhCCCCCEEEEeCChHH--H---H
Confidence 4799999999999999999876 67755 678763 2221111 32 347899996 7999999999322 1 1
Q ss_pred HHHHhcCCCCc-EEEEc-CCCchhcHHHHHHHHhC
Q 006864 303 DETFAKMKKGV-RIVNV-ARGGVIDEEALVRALDS 335 (628)
Q Consensus 303 ~~~l~~mk~ga-ilIN~-aRg~~vde~aL~~aL~~ 335 (628)
+-..+.++.|. +++.- .--.+-+.+.|.++.++
T Consensus 84 ~~~~~al~~Gk~v~~eKP~~~~~~~~~~l~~~a~~ 118 (315)
T 3c1a_A 84 EITLAAIASGKAVLVEKPLTLDLAEAEAVAAAAKA 118 (315)
T ss_dssp HHHHHHHHTTCEEEEESSSCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCcEEEcCCCcCCHHHHHHHHHHHHH
Confidence 22223355564 44441 22233444556666544
|
| >3e82_A Putative oxidoreductase; NAD, GFO/IDH/MOCA family, PSI-2, NYSGXRC, 11136F, structural genomics, protein structure initiative; 2.04A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=96.63 E-value=0.0044 Score=65.48 Aligned_cols=63 Identities=22% Similarity=0.382 Sum_probs=46.6
Q ss_pred CeEEEEecChhHHH-HHHHHHcC-CCEEE-EECCCCChhHHHHc-CCc-ccCHHHHhc--cCCEEEEcCCC
Q 006864 230 KTLAVMGFGKVGSE-VARRAKGL-GMNVI-AHDPYAPADKARAV-GVE-LVSFDQALA--TADFISLHMPL 293 (628)
Q Consensus 230 ktiGIIGlG~IG~~-vA~~l~~~-G~~V~-~~d~~~~~~~a~~~-g~~-~~sl~ell~--~aDvV~l~~Pl 293 (628)
.++||||+|.||+. .+..++.. +++|. ++|+..... .... ++. +.+++++++ +.|+|++++|-
T Consensus 8 ~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~-~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~ 77 (364)
T 3e82_A 8 INIALIGYGFVGKTFHAPLIRSVPGLNLAFVASRDEEKV-KRDLPDVTVIASPEAAVQHPDVDLVVIASPN 77 (364)
T ss_dssp EEEEEECCSHHHHHTHHHHHHTSTTEEEEEEECSCHHHH-HHHCTTSEEESCHHHHHTCTTCSEEEECSCG
T ss_pred ceEEEECCCHHHHHHHHHHHhhCCCeEEEEEEcCCHHHH-HhhCCCCcEECCHHHHhcCCCCCEEEEeCCh
Confidence 47999999999997 77777766 78876 568764222 2233 344 348999998 79999999983
|
| >1dxh_A Ornithine carbamoyltransferase; transcarbamylase; 2.50A {Pseudomonas aeruginosa} SCOP: c.78.1.1 c.78.1.1 PDB: 1ort_A | Back alignment and structure |
|---|
Probab=96.62 E-value=0.016 Score=60.92 Aligned_cols=128 Identities=17% Similarity=0.164 Sum_probs=87.4
Q ss_pred HHhcCceEEcCCCCChhhHHHHHHHHHHHHHHchhHHHHHHHcCcccccccceeeecCCeEEEEecC--hhHHHHHHHHH
Q 006864 172 ATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGKTLAVMGFG--KVGSEVARRAK 249 (628)
Q Consensus 172 a~~~GI~V~n~p~~~~~avAE~~l~l~L~~~R~i~~~~~~~~~g~W~~~~~~g~~l~GktiGIIGlG--~IG~~vA~~l~ 249 (628)
|...+|+|.|.-+....++- +++=++.+.++ .|..+.|.+|+++|=| ++..+++..+.
T Consensus 118 A~~s~vPVINa~~~~~HPtQ--~LaDl~Ti~e~------------------~g~~l~gl~va~vGD~~~~va~Sl~~~~~ 177 (335)
T 1dxh_A 118 AKFAGVPVFNGLTDEYHPTQ--MLADVLTMREH------------------SDKPLHDISYAYLGDARNNMGNSLLLIGA 177 (335)
T ss_dssp HHHSSSCEEEEECSSCCHHH--HHHHHHHHHHT------------------CSSCGGGCEEEEESCCSSHHHHHHHHHHH
T ss_pred HHhCCCCEEcCCCCCCCcHH--HHHHHHHHHHH------------------cCCCcCCeEEEEecCCccchHHHHHHHHH
Confidence 34457999997665444432 23333333331 1325889999999996 99999999999
Q ss_pred cCCCEEEEECCCC---ChhH---H----HHcCCc---ccCHHHHhccCCEEEEcCCC--C------cc-----ccccccH
Q 006864 250 GLGMNVIAHDPYA---PADK---A----RAVGVE---LVSFDQALATADFISLHMPL--N------PT-----TSKIFND 303 (628)
Q Consensus 250 ~~G~~V~~~d~~~---~~~~---a----~~~g~~---~~sl~ell~~aDvV~l~~Pl--t------~~-----t~~li~~ 303 (628)
.|||+|....|.. +.+. + ++.|.. ..++++.++.||+|..-.=. . .+ ...-++.
T Consensus 178 ~~G~~v~~~~P~~~~p~~~~~~~~~~~a~~~G~~v~~~~d~~eav~~aDvvytd~w~smg~~~e~~~er~~~~~~y~v~~ 257 (335)
T 1dxh_A 178 KLGMDVRIAAPKALWPHDEFVAQCKKFAEESGAKLTLTEDPKEAVKGVDFVHTDVWVSMGEPVEAWGERIKELLPYQVNM 257 (335)
T ss_dssp HTTCEEEEECCGGGSCCHHHHHHHHHHHHHHTCEEEEESCHHHHTTTCSEEEECCCSCSSSCGGGCHHHHHHHGGGCBCH
T ss_pred HcCCEEEEECCcccCCCHHHHHHHHHHHHHcCCeEEEEeCHHHHhCCCCEEEeCCccccCccchhhHHHHHHhhcceeCH
Confidence 9999999988753 2211 1 245643 23899999999999883321 0 00 1246788
Q ss_pred HHHhcC-CCCcEEEEcC
Q 006864 304 ETFAKM-KKGVRIVNVA 319 (628)
Q Consensus 304 ~~l~~m-k~gailIN~a 319 (628)
+.++++ ||+++|.-|.
T Consensus 258 ~ll~~a~~~~ai~mHcL 274 (335)
T 1dxh_A 258 EIMKATGNPRAKFMHCL 274 (335)
T ss_dssp HHHHTTCCSSCEEEECS
T ss_pred HHHHhccCCCeEEECCC
Confidence 999999 9999999985
|
| >1f06_A MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH-inhibitor ternary complex, oxidoreductase; HET: NDP 2NP; 2.10A {Corynebacterium glutamicum} SCOP: c.2.1.3 d.81.1.3 PDB: 1dap_A* 2dap_A* 3dap_A* | Back alignment and structure |
|---|
Probab=96.60 E-value=0.0024 Score=66.52 Aligned_cols=101 Identities=17% Similarity=0.177 Sum_probs=65.5
Q ss_pred CeEEEEecChhHHHHHHHHHcC-CCEEE-EECCCCChhHHHHcCCcc-cCHHHHhccCCEEEEcCCCCccccccccHHHH
Q 006864 230 KTLAVMGFGKVGSEVARRAKGL-GMNVI-AHDPYAPADKARAVGVEL-VSFDQALATADFISLHMPLNPTTSKIFNDETF 306 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~-G~~V~-~~d~~~~~~~a~~~g~~~-~sl~ell~~aDvV~l~~Plt~~t~~li~~~~l 306 (628)
.+|||||+|+||+.+++.+... +++++ ++|+..... .. .|+.. .++++++.++|+|++++|-... -+...
T Consensus 4 irV~IiG~G~mG~~~~~~l~~~~~~elvav~d~~~~~~-~~-~gv~~~~d~~~ll~~~DvViiatp~~~h-----~~~~~ 76 (320)
T 1f06_A 4 IRVAIVGYGNLGRSVEKLIAKQPDMDLVGIFSRRATLD-TK-TPVFDVADVDKHADDVDVLFLCMGSATD-----IPEQA 76 (320)
T ss_dssp EEEEEECCSHHHHHHHHHHTTCSSEEEEEEEESSSCCS-SS-SCEEEGGGGGGTTTTCSEEEECSCTTTH-----HHHHH
T ss_pred CEEEEEeecHHHHHHHHHHhcCCCCEEEEEEcCCHHHh-hc-CCCceeCCHHHHhcCCCEEEEcCCcHHH-----HHHHH
Confidence 3799999999999999999876 67765 578764321 11 34432 3678888889999999984321 12334
Q ss_pred hcCCCCcEEEEcCCCchh--cH-HHHHHHHhCCC
Q 006864 307 AKMKKGVRIVNVARGGVI--DE-EALVRALDSGV 337 (628)
Q Consensus 307 ~~mk~gailIN~aRg~~v--de-~aL~~aL~~g~ 337 (628)
..++.|.-++...-..+- +. +.|.++.+++.
T Consensus 77 ~al~aG~~Vv~ekp~~~~~~~~~~~l~~~a~~~~ 110 (320)
T 1f06_A 77 PKFAQFACTVDTYDNHRDIPRHRQVMNEAATAAG 110 (320)
T ss_dssp HHHTTTSEEECCCCCGGGHHHHHHHHHHHHHHHT
T ss_pred HHHHCCCEEEECCCCcCCHHHHHHHHHHHHHhCC
Confidence 456778777765444322 22 45566555443
|
| >3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=96.60 E-value=0.00028 Score=72.47 Aligned_cols=94 Identities=14% Similarity=0.057 Sum_probs=63.3
Q ss_pred CeEEEEecChhHHHHHHHHHcCCCEEEEECCCCCh-hHHHHcCCc---c-cCHHHHh-ccCCEEEEcCCCCccccccccH
Q 006864 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPA-DKARAVGVE---L-VSFDQAL-ATADFISLHMPLNPTTSKIFND 303 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~~g~~---~-~sl~ell-~~aDvV~l~~Plt~~t~~li~~ 303 (628)
++|+|||.|.||..+|..|...|.+|.+|++.... +.....|.. . .+..+.+ ..+|+|++++|-. ++...+ +
T Consensus 3 mkI~iiGaGa~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~D~vilavk~~-~~~~~l-~ 80 (294)
T 3g17_A 3 LSVAIIGPGAVGTTIAYELQQSLPHTTLIGRHAKTITYYTVPHAPAQDIVVKGYEDVTNTFDVIIIAVKTH-QLDAVI-P 80 (294)
T ss_dssp CCEEEECCSHHHHHHHHHHHHHCTTCEEEESSCEEEEEESSTTSCCEEEEEEEGGGCCSCEEEEEECSCGG-GHHHHG-G
T ss_pred cEEEEECCCHHHHHHHHHHHHCCCeEEEEEeccCcEEEEecCCeeccceecCchHhcCCCCCEEEEeCCcc-CHHHHH-H
Confidence 58999999999999999999889999999887421 111112321 1 1333444 8899999999944 344433 2
Q ss_pred HHHhcCCCCcEEEEcCCCchhc
Q 006864 304 ETFAKMKKGVRIVNVARGGVID 325 (628)
Q Consensus 304 ~~l~~mk~gailIN~aRg~~vd 325 (628)
..-..++++.+||.+.-|=-..
T Consensus 81 ~l~~~l~~~~~iv~~~nGi~~~ 102 (294)
T 3g17_A 81 HLTYLAHEDTLIILAQNGYGQL 102 (294)
T ss_dssp GHHHHEEEEEEEEECCSSCCCG
T ss_pred HHHHhhCCCCEEEEeccCcccH
Confidence 2333467888999998764443
|
| >1pvv_A Otcase, ornithine carbamoyltransferase; dodecamer; 1.87A {Pyrococcus furiosus} SCOP: c.78.1.1 c.78.1.1 PDB: 1a1s_A | Back alignment and structure |
|---|
Probab=96.57 E-value=0.029 Score=58.46 Aligned_cols=127 Identities=17% Similarity=0.166 Sum_probs=86.6
Q ss_pred HHhcCceEEcCCCCChhhHHHHHHHHHHHHHHchhHHHHHHHcCcccccccceeeecCCeEEEEec-ChhHHHHHHHHHc
Q 006864 172 ATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGKTLAVMGF-GKVGSEVARRAKG 250 (628)
Q Consensus 172 a~~~GI~V~n~p~~~~~avAE~~l~l~L~~~R~i~~~~~~~~~g~W~~~~~~g~~l~GktiGIIGl-G~IG~~vA~~l~~ 250 (628)
|...+|+|+|+-+....++- +++=++.+.+++ | .+.|.+|+++|= +++..+++..+..
T Consensus 119 A~~~~vPVINa~~~~~HPtQ--aLaDl~Ti~e~~------------------g-~l~gl~va~vGD~~rva~Sl~~~~~~ 177 (315)
T 1pvv_A 119 AKYATVPVINGLSDFSHPCQ--ALADYMTIWEKK------------------G-TIKGVKVVYVGDGNNVAHSLMIAGTK 177 (315)
T ss_dssp HHHCSSCEEEEECSSCCHHH--HHHHHHHHHHHH------------------S-CCTTCEEEEESCCCHHHHHHHHHHHH
T ss_pred HHhCCCCEEcCCCCCCCcHH--HHHHHHHHHHHh------------------C-CcCCcEEEEECCCcchHHHHHHHHHH
Confidence 34456899997665444432 333333333321 2 478999999997 8999999999999
Q ss_pred CCCEEEEECCCC--Chh-H---H----HHcCCc---ccCHHHHhccCCEEEEcCCC-------Ccc-----ccccccHHH
Q 006864 251 LGMNVIAHDPYA--PAD-K---A----RAVGVE---LVSFDQALATADFISLHMPL-------NPT-----TSKIFNDET 305 (628)
Q Consensus 251 ~G~~V~~~d~~~--~~~-~---a----~~~g~~---~~sl~ell~~aDvV~l~~Pl-------t~~-----t~~li~~~~ 305 (628)
||++|.+..|.. +.. . + ++.|.. ..++++.++.||+|..-.=. .++ ....++.+.
T Consensus 178 ~g~~v~~~~P~~~~~~~~~~~~~~~~a~~~g~~~~~~~d~~eav~~aDvvy~~~w~smg~~~~~~~~~~~~~~y~v~~el 257 (315)
T 1pvv_A 178 LGADVVVATPEGYEPDEKVIKWAEQNAAESGGSFELLHDPVKAVKDADVIYTDVWASMGQEAEAEERRKIFRPFQVNKDL 257 (315)
T ss_dssp TTCEEEEECCTTCCCCHHHHHHHHHHHHHHTCEEEEESCHHHHTTTCSEEEECCCCCSSTTSSSSHHHHHHGGGCBCHHH
T ss_pred CCCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEeCHHHHhCCCCEEEEcceeccCcccchHHHHHHHHhcCCCHHH
Confidence 999999988753 221 1 1 245633 23899999999999884321 011 125578899
Q ss_pred HhcCCCCcEEEEcC
Q 006864 306 FAKMKKGVRIVNVA 319 (628)
Q Consensus 306 l~~mk~gailIN~a 319 (628)
++++|++++|.-|.
T Consensus 258 l~~a~~~ai~mH~l 271 (315)
T 1pvv_A 258 VKHAKPDYMFMHCL 271 (315)
T ss_dssp HHTSCTTCEEEECS
T ss_pred HhhcCCCcEEECCC
Confidence 99999999999985
|
| >1j5p_A Aspartate dehydrogenase; TM1643, structural genomics, JCSG, protein structure initiative, joint center for structural G oxidoreductase; HET: NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3 PDB: 1h2h_A* | Back alignment and structure |
|---|
Probab=96.56 E-value=0.0023 Score=64.76 Aligned_cols=97 Identities=14% Similarity=0.205 Sum_probs=69.3
Q ss_pred cCCeEEEEecChhHHHHHHHHHcCCCEE-EEECCCCChhHHHHcCCccc-CHHHHhccCCEEEEcCCCCccccccccHHH
Q 006864 228 VGKTLAVMGFGKVGSEVARRAKGLGMNV-IAHDPYAPADKARAVGVELV-SFDQALATADFISLHMPLNPTTSKIFNDET 305 (628)
Q Consensus 228 ~GktiGIIGlG~IG~~vA~~l~~~G~~V-~~~d~~~~~~~a~~~g~~~~-sl~ell~~aDvV~l~~Plt~~t~~li~~~~ 305 (628)
+.++|+++|+|.||+.+++. . ++++ .+|+ .. ..++|+..+ +++++++++|+|+=|.+ .+ -+.+..
T Consensus 11 ~~~rV~i~G~GaIG~~v~~~--~-~leLv~v~~-~k----~gelgv~a~~d~d~lla~pD~VVe~A~-~~----av~e~~ 77 (253)
T 1j5p_A 11 HHMTVLIIGMGNIGKKLVEL--G-NFEKIYAYD-RI----SKDIPGVVRLDEFQVPSDVSTVVECAS-PE----AVKEYS 77 (253)
T ss_dssp CCCEEEEECCSHHHHHHHHH--S-CCSEEEEEC-SS----CCCCSSSEECSSCCCCTTCCEEEECSC-HH----HHHHHH
T ss_pred ccceEEEECcCHHHHHHHhc--C-CcEEEEEEe-cc----ccccCceeeCCHHHHhhCCCEEEECCC-HH----HHHHHH
Confidence 45799999999999999998 4 7876 4567 21 112266543 69999999999977664 21 233334
Q ss_pred HhcCCCCcEEEEcCCCchhcH---HHHHHHHhCCC
Q 006864 306 FAKMKKGVRIVNVARGGVIDE---EALVRALDSGV 337 (628)
Q Consensus 306 l~~mk~gailIN~aRg~~vde---~aL~~aL~~g~ 337 (628)
..-|+.|.-+|-++-|.+.|. +.|.++.+.|.
T Consensus 78 ~~iL~aG~dvv~~S~gaLad~~l~~~L~~aA~~gg 112 (253)
T 1j5p_A 78 LQILKNPVNYIIISTSAFADEVFRERFFSELKNSP 112 (253)
T ss_dssp HHHTTSSSEEEECCGGGGGSHHHHHHHHHHHHTCS
T ss_pred HHHHHCCCCEEEcChhhhcCHHHHHHHHHHHHHCC
Confidence 556899999999998888887 45566666654
|
| >4fcc_A Glutamate dehydrogenase; protein complex, rossmann fold, metabolic role, NAD, NADP, oxidoreductase; 2.00A {Escherichia coli O157} PDB: 4fhn_X 2yfg_A 3sbo_A 2yfg_E | Back alignment and structure |
|---|
Probab=96.55 E-value=0.0075 Score=65.63 Aligned_cols=108 Identities=19% Similarity=0.223 Sum_probs=72.1
Q ss_pred eeeecCCeEEEEecChhHHHHHHHHHcCCCEEEE--------ECCCC-ChhH------------------HHHcCCcccC
Q 006864 224 GVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIA--------HDPYA-PADK------------------ARAVGVELVS 276 (628)
Q Consensus 224 g~~l~GktiGIIGlG~IG~~vA~~l~~~G~~V~~--------~d~~~-~~~~------------------a~~~g~~~~s 276 (628)
+.++.|||+.|=|+|++|+.+|+.|...|++|++ |||.- +.+. +...|.+.++
T Consensus 230 ~~~l~Gk~vaVQG~GnVG~~aa~~L~e~GakvVavsD~~G~i~d~~Gid~e~l~~l~e~k~~~~g~v~~~~~~~g~~~~~ 309 (450)
T 4fcc_A 230 GMGFEGMRVSVSGSGNVAQYAIEKAMEFGARVITASDSSGTVVDESGFTKEKLARLIEIKSSRDGRVADYAKEFGLVYLE 309 (450)
T ss_dssp TCCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEEETTEEEECTTCCCHHHHHHHHHHHTSTTCCHHHHHHHHTCEEEE
T ss_pred CCCcCCCEEEEeCCChHHHHHHHHHHhcCCeEEEEecCCceEEeCCCCCHHHHHHHHHHhcccCCccccccccCCcEEec
Confidence 4568999999999999999999999999999986 44442 2211 1122444444
Q ss_pred HHHHhc-cCCEEEEcCCCCccccccccHHHHhcCCCC--cEEEEcCCCchhcHHHHHHHHhCCCe
Q 006864 277 FDQALA-TADFISLHMPLNPTTSKIFNDETFAKMKKG--VRIVNVARGGVIDEEALVRALDSGVV 338 (628)
Q Consensus 277 l~ell~-~aDvV~l~~Plt~~t~~li~~~~l~~mk~g--ailIN~aRg~~vde~aL~~aL~~g~i 338 (628)
-++++. .||+.+=|. +.+.|+.+...+++.. .++++-|-+.+-.+ +- +.|.+..|
T Consensus 310 ~~~i~~~~~DI~iPcA-----l~~~I~~~~a~~L~a~g~k~IaEgAN~p~t~e-A~-~iL~~rGI 367 (450)
T 4fcc_A 310 GQQPWSVPVDIALPCA-----TQNELDVDAAHQLIANGVKAVAEGANMPTTIE-AT-ELFQQAGV 367 (450)
T ss_dssp TCCGGGSCCSEEEECS-----CTTCBCHHHHHHHHHTTCCEEECCSSSCBCHH-HH-HHHHHTTC
T ss_pred CcccccCCccEEeecc-----ccccccHHHHHHHHhcCceEEecCCCCCCCHH-HH-HHHHHCCC
Confidence 444443 689887765 4667888888777653 47777777665433 32 44555444
|
| >3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A* | Back alignment and structure |
|---|
Probab=96.54 E-value=0.0029 Score=65.95 Aligned_cols=71 Identities=24% Similarity=0.359 Sum_probs=53.0
Q ss_pred eeeecCCeEEEEecChhHHHHHHHHHcCCC-EEEEECCCCC-hhHHHH--------cCC--c---ccCH---HHHhccCC
Q 006864 224 GVSLVGKTLAVMGFGKVGSEVARRAKGLGM-NVIAHDPYAP-ADKARA--------VGV--E---LVSF---DQALATAD 285 (628)
Q Consensus 224 g~~l~GktiGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~~-~~~a~~--------~g~--~---~~sl---~ell~~aD 285 (628)
+.++.||++.|+|.|.+|++++..|...|. +|.+++|... .+++++ .+. . ..++ .+.+.++|
T Consensus 143 ~~~l~gk~~lVlGAGGaaraia~~L~~~G~~~v~v~nRt~~~~~~a~~la~~~~~~~~~~v~~~~~~~l~~~~~~l~~~D 222 (312)
T 3t4e_A 143 GFDMRGKTMVLLGAGGAATAIGAQAAIEGIKEIKLFNRKDDFFEKAVAFAKRVNENTDCVVTVTDLADQHAFTEALASAD 222 (312)
T ss_dssp TCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTHHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHHHHCS
T ss_pred CCCcCCCEEEEECcCHHHHHHHHHHHHcCCCEEEEEECCCchHHHHHHHHHHhhhccCcceEEechHhhhhhHhhccCce
Confidence 356889999999999999999999999998 8999998732 222221 121 1 1233 55688999
Q ss_pred EEEEcCCCC
Q 006864 286 FISLHMPLN 294 (628)
Q Consensus 286 vV~l~~Plt 294 (628)
+|+.++|..
T Consensus 223 iIINaTp~G 231 (312)
T 3t4e_A 223 ILTNGTKVG 231 (312)
T ss_dssp EEEECSSTT
T ss_pred EEEECCcCC
Confidence 999999964
|
| >3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A* | Back alignment and structure |
|---|
Probab=96.53 E-value=0.0022 Score=69.41 Aligned_cols=90 Identities=19% Similarity=0.304 Sum_probs=64.0
Q ss_pred CCeEEEEecChhHHHHHHHHHcCCCEEEEECCCCC-hhHHHHcCCccc-----C---HHHH-hccCCEEEEcCCCCcccc
Q 006864 229 GKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAP-ADKARAVGVELV-----S---FDQA-LATADFISLHMPLNPTTS 298 (628)
Q Consensus 229 GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~g~~~~-----s---l~el-l~~aDvV~l~~Plt~~t~ 298 (628)
+.++.|+|+|++|+.+|+.|+..|.+|++.|.... .+..+..|+..+ + |+++ +.+||+|++++|-.. .
T Consensus 4 ~~~viIiG~Gr~G~~va~~L~~~g~~vvvId~d~~~v~~~~~~g~~vi~GDat~~~~L~~agi~~A~~viv~~~~~~--~ 81 (413)
T 3l9w_A 4 GMRVIIAGFGRFGQITGRLLLSSGVKMVVLDHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAIDDPQ--T 81 (413)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCCEEEEECCHHHHHHHHHTTCCCEESCTTCHHHHHHTTTTTCSEEEECCSSHH--H
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHhCCCeEEEcCCCCHHHHHhcCCCccCEEEECCCChH--H
Confidence 45799999999999999999999999999998752 234455666432 2 3444 688999999998433 3
Q ss_pred ccccHHHHhcCCCCcEEEEcCC
Q 006864 299 KIFNDETFAKMKKGVRIVNVAR 320 (628)
Q Consensus 299 ~li~~~~l~~mk~gailIN~aR 320 (628)
++.-......+.+...+|--++
T Consensus 82 n~~i~~~ar~~~p~~~Iiara~ 103 (413)
T 3l9w_A 82 NLQLTEMVKEHFPHLQIIARAR 103 (413)
T ss_dssp HHHHHHHHHHHCTTCEEEEEES
T ss_pred HHHHHHHHHHhCCCCeEEEEEC
Confidence 3333445566777766665544
|
| >3ohs_X Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; dimeric dihydrodiol dehydrogenase, MDD, oxidoreductase; 1.90A {Macaca fascicularis} PDB: 2o48_X 2poq_X* 2o4u_X | Back alignment and structure |
|---|
Probab=96.50 E-value=0.0044 Score=64.46 Aligned_cols=64 Identities=11% Similarity=0.133 Sum_probs=48.6
Q ss_pred CeEEEEecChhHHHHHHHHHcCC---CEEEE-ECCCCC--hhHHHHcCCc--ccCHHHHhc--cCCEEEEcCCC
Q 006864 230 KTLAVMGFGKVGSEVARRAKGLG---MNVIA-HDPYAP--ADKARAVGVE--LVSFDQALA--TADFISLHMPL 293 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~G---~~V~~-~d~~~~--~~~a~~~g~~--~~sl~ell~--~aDvV~l~~Pl 293 (628)
.++||||+|.||+..++.++..+ +++.+ +|+... ...++..|+. +.+++++++ +.|+|++++|-
T Consensus 3 ~rigiiG~G~ig~~~~~~l~~~~~~~~~l~av~d~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~ 76 (334)
T 3ohs_X 3 LRWGIVSVGLISSDFTAVLQTLPRSEHQVVAVAARDLSRAKEFAQKHDIPKAYGSYEELAKDPNVEVAYVGTQH 76 (334)
T ss_dssp EEEEEECCSHHHHHHHHHHTTSCTTTEEEEEEECSSHHHHHHHHHHHTCSCEESSHHHHHHCTTCCEEEECCCG
T ss_pred cEEEEECchHHHHHHHHHHHhCCCCCeEEEEEEcCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEECCCc
Confidence 37999999999999999998664 46554 687642 2334556763 458999997 69999999983
|
| >2fgc_A Acetolactate synthase, small subunit; regulatory subunit, structural genomi protein structure initiative; 2.30A {Thermotoga maritima} SCOP: d.58.18.6 d.58.18.6 | Back alignment and structure |
|---|
Probab=96.50 E-value=0.0031 Score=61.07 Aligned_cols=70 Identities=20% Similarity=0.311 Sum_probs=56.6
Q ss_pred CcEEEEeccCCCCchhhHHhhhhcCCccccceEEeeeecCccEEEEEEeC--CCCCHHHHHHHhcccCcccc
Q 006864 558 GNLILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVD--EEPNQDSLKEIGKVHFVARI 627 (628)
Q Consensus 558 ~~~Llv~~~D~PGvIa~V~~iL~~~~INIa~m~v~R~~~gg~Al~~i~vD--~~~~~~~l~~L~~l~~v~~v 627 (628)
.+.|-+...|+||++++|+.++.+.|+||..+.++.....+..-|.|.++ +..-+.+.++|.++.+|.+|
T Consensus 29 ~~~LsVlVeN~pGvLaRItglfsrRG~NI~SLtV~~ted~gisRitIvV~g~e~~ieqL~kQL~KLidVikV 100 (193)
T 2fgc_A 29 EHLVSMLVHNKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMVKGDDKTIEQIEKQAYKLVEVVKV 100 (193)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHTTTCEEEEEEEEECSSTTEEEEEEEEEECTTHHHHHHHHHTTSTTEEEE
T ss_pred EEEEEEEECCCChHHHHHHHHHHHCCceEEEEEeeccCCCCEEEEEEEEECCHHHHHHHHHHhcCcCceEEE
Confidence 47787888999999999999999999999999999777767777766665 34455777888887777664
|
| >4amu_A Ornithine carbamoyltransferase, catabolic; ornithine transcarbamoylase, hydrolase; 2.50A {Mycoplasma penetrans} PDB: 4anf_A | Back alignment and structure |
|---|
Probab=96.49 E-value=0.019 Score=60.85 Aligned_cols=128 Identities=20% Similarity=0.144 Sum_probs=85.4
Q ss_pred HHHhcCceEEcCCCCChhhHHHHHHHHHHHHHHchhHHHHHHHcCcccccccceeeecCCeEEEEecC--hhHHHHHHHH
Q 006864 171 AATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGKTLAVMGFG--KVGSEVARRA 248 (628)
Q Consensus 171 aa~~~GI~V~n~p~~~~~avAE~~l~l~L~~~R~i~~~~~~~~~g~W~~~~~~g~~l~GktiGIIGlG--~IG~~vA~~l 248 (628)
.|..-+|+|.|+-+...-++- +++=++.+.++ .| .+.|++|+++|=| ++..+++..+
T Consensus 143 lA~~s~vPVINa~~~~~HPtQ--aLaDl~Ti~E~------------------~G-~l~glkva~vGD~~nnva~Sl~~~~ 201 (365)
T 4amu_A 143 LVKYSGVPVWNGLTDDEHPTQ--IIADFMTMKEK------------------FG-NLKNKKIVFIGDYKNNVGVSTMIGA 201 (365)
T ss_dssp HHHHHCSCEEEEECSSCCHHH--HHHHHHHHHHH------------------HS-SCTTCEEEEESSTTSHHHHHHHHHH
T ss_pred HHHhCCCCEEeCCCCCCCcHH--HHHHHHHHHHH------------------hC-CCCCCEEEEECCCCcchHHHHHHHH
Confidence 344568999998654433331 22222322221 12 2789999999988 7899999999
Q ss_pred HcCCCEEEEECCCC--C---hhH-------HHHcCCc--c-cCHHHHhccCCEEEEcC--CCCccc-----------ccc
Q 006864 249 KGLGMNVIAHDPYA--P---ADK-------ARAVGVE--L-VSFDQALATADFISLHM--PLNPTT-----------SKI 300 (628)
Q Consensus 249 ~~~G~~V~~~d~~~--~---~~~-------a~~~g~~--~-~sl~ell~~aDvV~l~~--Plt~~t-----------~~l 300 (628)
..+||+|.+..|.. + .+. +.+.|.. . .++++.++.||+|..-+ ...++. ..-
T Consensus 202 ~~lG~~v~~~~P~~~~p~~~~~~~~~~~~~~~~~g~~i~~~~d~~eav~~aDVVytd~W~smg~~~~~~~er~~~~~~y~ 281 (365)
T 4amu_A 202 AFNGMHVVMCGPDNYKNEIDKNVLAKCIELFKRNGGSLRFSTDKILAAQDADVIYTDVWVSLGEPFELFDKRIGELKNFQ 281 (365)
T ss_dssp HHTTCEEEEESCGGGGGGSCHHHHHHHHHHHHHHSCEEEEESCHHHHTTTCSEEEECCSCCTTCCHHHHHHHHHHHTTCC
T ss_pred HHcCCEEEEECCccccCCCcHHHHHHHHHHHHHcCCEEEEECCHHHHhcCCCEEEecccccCCchhhhHHHHHHHhcccc
Confidence 99999999988743 2 111 2334533 2 38999999999998732 222211 245
Q ss_pred ccHHHHhcCCCCcEEEEcC
Q 006864 301 FNDETFAKMKKGVRIVNVA 319 (628)
Q Consensus 301 i~~~~l~~mk~gailIN~a 319 (628)
++.+.++.+|++++|.-|.
T Consensus 282 vt~ell~~a~~dai~MHcL 300 (365)
T 4amu_A 282 VDMNMIKAAKNDVIFLHCL 300 (365)
T ss_dssp BCHHHHHHSCTTCEEEECS
T ss_pred cCHHHHHhcCCCcEEECCC
Confidence 7888888899999999885
|
| >1duv_G Octase-1, ornithine transcarbamoylase; enzyme-inhibitor complex, transferase; HET: PSQ; 1.70A {Escherichia coli} SCOP: c.78.1.1 c.78.1.1 PDB: 1akm_A* 2otc_A* | Back alignment and structure |
|---|
Probab=96.49 E-value=0.016 Score=60.85 Aligned_cols=129 Identities=19% Similarity=0.161 Sum_probs=87.8
Q ss_pred HHhcCceEEcCCCCChhhHHHHHHHHHHHHHHchhHHHHHHHcCcccccccceeeecCCeEEEEecC--hhHHHHHHHHH
Q 006864 172 ATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGKTLAVMGFG--KVGSEVARRAK 249 (628)
Q Consensus 172 a~~~GI~V~n~p~~~~~avAE~~l~l~L~~~R~i~~~~~~~~~g~W~~~~~~g~~l~GktiGIIGlG--~IG~~vA~~l~ 249 (628)
|...+|+|.|.-+....++- +++=++.+.+++ .|..+.|.+|+++|=| ++..+++..+.
T Consensus 117 A~~~~vPVINa~~~~~HPtQ--~LaDl~Ti~e~~-----------------~g~~l~gl~ia~vGD~~~~va~Sl~~~~~ 177 (333)
T 1duv_G 117 AEYASVPVWNGLTNEFHPTQ--LLADLLTMQEHL-----------------PGKAFNEMTLVYAGDARNNMGNSMLEAAA 177 (333)
T ss_dssp HHHHSSCEEESCCSSCCHHH--HHHHHHHHHHHS-----------------TTCCGGGCEEEEESCTTSHHHHHHHHHHH
T ss_pred HHhCCCCeEcCCCCCCCchH--HHHHHHHHHHHh-----------------cCCCCCCcEEEEECCCccchHHHHHHHHH
Confidence 33447999998765544442 333333333320 1325789999999986 99999999999
Q ss_pred cCCCEEEEECCCC---ChhH-------HHHcCCc---ccCHHHHhccCCEEEEcCCC--Cc------c-----ccccccH
Q 006864 250 GLGMNVIAHDPYA---PADK-------ARAVGVE---LVSFDQALATADFISLHMPL--NP------T-----TSKIFND 303 (628)
Q Consensus 250 ~~G~~V~~~d~~~---~~~~-------a~~~g~~---~~sl~ell~~aDvV~l~~Pl--t~------~-----t~~li~~ 303 (628)
.|||+|.+..|.. +.+. +++.|.. ..++++.++.||+|..-.=. .. + ....++.
T Consensus 178 ~~G~~v~~~~P~~~~p~~~~~~~~~~~a~~~G~~v~~~~d~~eav~~aDvvytd~w~smg~~~~~~~er~~~~~~y~v~~ 257 (333)
T 1duv_G 178 LTGLDLRLVAPQACWPEAALVTECRALAQQNGGNITLTEDVAKGVEGADFIYTDVWVSMGEAKEKWAERIALLREYQVNS 257 (333)
T ss_dssp HHCCEEEEECCGGGCCCHHHHHHHHHHHHHTTCEEEEESCHHHHHTTCSEEEECCSSCTTSCTTHHHHHHHHHGGGCBCH
T ss_pred HcCCEEEEECCcccCCCHHHHHHHHHHHHHcCCeEEEEECHHHHhCCCCEEEeCCccccCccccchHHHHHHhhccccCH
Confidence 9999999988753 2211 1255643 23899999999999883321 10 0 1256788
Q ss_pred HHHhcC-CCCcEEEEcC
Q 006864 304 ETFAKM-KKGVRIVNVA 319 (628)
Q Consensus 304 ~~l~~m-k~gailIN~a 319 (628)
+.++++ |++++|.-|.
T Consensus 258 ~ll~~a~~~~ai~mHcL 274 (333)
T 1duv_G 258 KMMQLTGNPEVKFLHCL 274 (333)
T ss_dssp HHHHTTCCTTCEEEECS
T ss_pred HHHHhccCCCcEEECCC
Confidence 999999 9999999985
|
| >3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=96.48 E-value=0.0064 Score=66.47 Aligned_cols=94 Identities=16% Similarity=0.194 Sum_probs=68.2
Q ss_pred eeeecCCeEEEEecC----------hhHHHHHHHHHcCCCEEEEECCCCChhHHHHcC--Cccc-CHHHHhccCCEEEEc
Q 006864 224 GVSLVGKTLAVMGFG----------KVGSEVARRAKGLGMNVIAHDPYAPADKARAVG--VELV-SFDQALATADFISLH 290 (628)
Q Consensus 224 g~~l~GktiGIIGlG----------~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g--~~~~-sl~ell~~aDvV~l~ 290 (628)
+..+.|++|+|+|+- .=...+++.|...|.+|.+|||+...+.....+ +.++ ++++.++.||.|+++
T Consensus 313 ~~~~~~~~v~vlGlafK~~~dD~R~sp~~~i~~~L~~~g~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~ad~~vi~ 392 (450)
T 3gg2_A 313 KGNVQGRCVAIWGLSFKPGTDDMREAPSLVLIEKLLEVGCRVRVYDPVAMKEAQKRLGDKVEYTTDMYDAVRGAEALFHV 392 (450)
T ss_dssp TTCCTTCEEEEECCSSSTTCCCCTTCHHHHHHHHHHHTTCEEEEECSSCHHHHHHHHGGGSEECSSHHHHTTTCSCEEEC
T ss_pred cccCCCCEEEEEeeeeCCCCcccccChHHHHHHHHHHCCCEEEEECCCCcHHHHHhcCccceecCCHHHHhcCCCEEEEc
Confidence 456899999999984 236889999999999999999998543323333 4444 788999999999999
Q ss_pred CCCCccccccccHHHH-hcCCCCcEEEEcCCC
Q 006864 291 MPLNPTTSKIFNDETF-AKMKKGVRIVNVARG 321 (628)
Q Consensus 291 ~Plt~~t~~li~~~~l-~~mk~gailIN~aRg 321 (628)
++- ++-+. ++-+.+ +.|+ +.+|+|+ |+
T Consensus 393 t~~-~~f~~-~~~~~~~~~~~-~~~i~D~-r~ 420 (450)
T 3gg2_A 393 TEW-KEFRM-PDWSALSQAMA-ASLVIDG-RN 420 (450)
T ss_dssp SCC-GGGSS-CCHHHHHHHSS-SCEEEES-SC
T ss_pred cCC-HHHhh-cCHHHHHHhcC-CCEEEEC-CC
Confidence 873 33333 354444 4465 6689995 44
|
| >1ydw_A AX110P-like protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT4G09670; 2.49A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.5 PDB: 2q4e_A | Back alignment and structure |
|---|
Probab=96.47 E-value=0.009 Score=62.83 Aligned_cols=104 Identities=17% Similarity=0.196 Sum_probs=66.8
Q ss_pred CeEEEEecChhHHHHHHHHHcC-CCEEE-EECCCCCh--hHHHHcCC----c-ccCHHHHhc--cCCEEEEcCCCCcccc
Q 006864 230 KTLAVMGFGKVGSEVARRAKGL-GMNVI-AHDPYAPA--DKARAVGV----E-LVSFDQALA--TADFISLHMPLNPTTS 298 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~-G~~V~-~~d~~~~~--~~a~~~g~----~-~~sl~ell~--~aDvV~l~~Plt~~t~ 298 (628)
.++||||+|.||+.+++.++.. ++++. ++|+.... ..+...|+ . +.+++++++ ++|+|++++|-. ..
T Consensus 7 ~~vgiiG~G~ig~~~~~~l~~~~~~~lv~v~d~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~--~h 84 (362)
T 1ydw_A 7 IRIGVMGCADIARKVSRAIHLAPNATISGVASRSLEKAKAFATANNYPESTKIHGSYESLLEDPEIDALYVPLPTS--LH 84 (362)
T ss_dssp EEEEEESCCTTHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHTTCCTTCEEESSHHHHHHCTTCCEEEECCCGG--GH
T ss_pred eEEEEECchHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHHhCCCCCCeeeCCHHHHhcCCCCCEEEEcCChH--HH
Confidence 4799999999999999998875 57765 57876422 23344553 2 348999996 599999999832 22
Q ss_pred ccccHHHHhcCCCCcEEE-Ec-CCCchhcHHHHHHHHhCCCe
Q 006864 299 KIFNDETFAKMKKGVRIV-NV-ARGGVIDEEALVRALDSGVV 338 (628)
Q Consensus 299 ~li~~~~l~~mk~gailI-N~-aRg~~vde~aL~~aL~~g~i 338 (628)
-+-....++.|.-++ .- ---.+-+.+.|.++.++..+
T Consensus 85 ---~~~~~~al~aGk~V~~EKP~a~~~~e~~~l~~~a~~~g~ 123 (362)
T 1ydw_A 85 ---VEWAIKAAEKGKHILLEKPVAMNVTEFDKIVDACEANGV 123 (362)
T ss_dssp ---HHHHHHHHTTTCEEEECSSCSSSHHHHHHHHHHHHTTTC
T ss_pred ---HHHHHHHHHCCCeEEEecCCcCCHHHHHHHHHHHHHcCC
Confidence 122333466676444 32 12233455677777766543
|
| >3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A* | Back alignment and structure |
|---|
Probab=96.43 E-value=0.0035 Score=65.51 Aligned_cols=63 Identities=21% Similarity=0.242 Sum_probs=48.6
Q ss_pred CeEEEEecChhHHHHHHHHH-c-CCCEEE-EECCCCCh--hHHHHcC--Cc-ccCHHHHhcc--CCEEEEcCC
Q 006864 230 KTLAVMGFGKVGSEVARRAK-G-LGMNVI-AHDPYAPA--DKARAVG--VE-LVSFDQALAT--ADFISLHMP 292 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~-~-~G~~V~-~~d~~~~~--~~a~~~g--~~-~~sl~ell~~--aDvV~l~~P 292 (628)
.+|||||+|.||+..++.++ . -++++. ++|+.... ..++..| .. +.++++++++ .|+|++++|
T Consensus 3 ~rigiIG~G~~g~~~~~~l~~~~~~~~l~av~d~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~D~V~i~tp 75 (344)
T 3mz0_A 3 LRIGVIGTGAIGKEHINRITNKLSGAEIVAVTDVNQEAAQKVVEQYQLNATVYPNDDSLLADENVDAVLVTSW 75 (344)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTCSSEEEEEEECSSHHHHHHHHHHTTCCCEEESSHHHHHHCTTCCEEEECSC
T ss_pred EEEEEECccHHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHHhCCCCeeeCCHHHHhcCCCCCEEEECCC
Confidence 37999999999999999998 5 468876 57886422 2344556 33 3489999986 999999998
|
| >1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B* | Back alignment and structure |
|---|
Probab=96.43 E-value=0.0012 Score=66.49 Aligned_cols=105 Identities=16% Similarity=0.195 Sum_probs=66.8
Q ss_pred HHHHHHcCcccccccceeeecCCeEEEEecChhHHHHHHHHHcCCC-EEEEECCCC-------------------ChhH-
Q 006864 208 ADASIKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGM-NVIAHDPYA-------------------PADK- 266 (628)
Q Consensus 208 ~~~~~~~g~W~~~~~~g~~l~GktiGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~-------------------~~~~- 266 (628)
+.++++-.+|... .-..|.+++|.|||+|.+|..+|+.|...|. ++..+|+.. +...
T Consensus 12 y~Rq~~l~~~g~~--~q~~l~~~~VlVvG~Gg~G~~va~~La~~Gv~~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~ 89 (249)
T 1jw9_B 12 YNRQIILRGFDFD--GQEALKDSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVES 89 (249)
T ss_dssp THHHHTSTTTHHH--HHHHHHHCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHH
T ss_pred hhheecccccCHH--HHHHHhCCeEEEEeeCHHHHHHHHHHHHcCCCeEEEEcCCCcccccCCcccccChhhcCcHHHHH
Confidence 3344444446431 1235889999999999999999999999997 899998764 1111
Q ss_pred ----HHHc--CCc--c----c---CHHHHhccCCEEEEcCCCCccccccccHHHHhcCCCCcEEEEc
Q 006864 267 ----ARAV--GVE--L----V---SFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNV 318 (628)
Q Consensus 267 ----a~~~--g~~--~----~---sl~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~ 318 (628)
..+. +++ . . +++++++++|+|+.+++ +.+++.++++...+. +..+|+.
T Consensus 90 ~~~~l~~~np~~~v~~~~~~~~~~~~~~~~~~~DvVi~~~d-~~~~~~~l~~~~~~~---~~p~i~~ 152 (249)
T 1jw9_B 90 ARDALTRINPHIAITPVNALLDDAELAALIAEHDLVLDCTD-NVAVRNQLNAGCFAA---KVPLVSG 152 (249)
T ss_dssp HHHHHHHHCTTSEEEEECSCCCHHHHHHHHHTSSEEEECCS-SHHHHHHHHHHHHHH---TCCEEEE
T ss_pred HHHHHHHHCCCcEEEEEeccCCHhHHHHHHhCCCEEEEeCC-CHHHHHHHHHHHHHc---CCCEEEe
Confidence 0111 111 1 1 24567788888888876 456777776655543 3345554
|
| >3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium} | Back alignment and structure |
|---|
Probab=96.43 E-value=0.0053 Score=60.97 Aligned_cols=90 Identities=18% Similarity=0.224 Sum_probs=63.7
Q ss_pred eeeecCCeEEEEecChhHHHHHHHHHcCCCEEEEECCCCChhHH---HHcCCccc--C-HHHHhccCCEEEEcCCCCccc
Q 006864 224 GVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKA---RAVGVELV--S-FDQALATADFISLHMPLNPTT 297 (628)
Q Consensus 224 g~~l~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a---~~~g~~~~--s-l~ell~~aDvV~l~~Plt~~t 297 (628)
..++.||++.|||.|.+|...++.|...|.+|.+++|....+.. ...++... . -++.+..+|+|+.++. .++
T Consensus 26 fl~L~gk~VLVVGgG~va~~ka~~Ll~~GA~VtVvap~~~~~l~~l~~~~~i~~i~~~~~~~dL~~adLVIaAT~-d~~- 103 (223)
T 3dfz_A 26 MLDLKGRSVLVVGGGTIATRRIKGFLQEGAAITVVAPTVSAEINEWEAKGQLRVKRKKVGEEDLLNVFFIVVATN-DQA- 103 (223)
T ss_dssp EECCTTCCEEEECCSHHHHHHHHHHGGGCCCEEEECSSCCHHHHHHHHTTSCEEECSCCCGGGSSSCSEEEECCC-CTH-
T ss_pred EEEcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHcCCcEEEECCCCHhHhCCCCEEEECCC-CHH-
Confidence 45899999999999999999999999999999999998754321 22234322 1 2356788999987653 322
Q ss_pred cccccHHHHhcCCCCcEEEEcC
Q 006864 298 SKIFNDETFAKMKKGVRIVNVA 319 (628)
Q Consensus 298 ~~li~~~~l~~mk~gailIN~a 319 (628)
+|.......+ -.++||++
T Consensus 104 ---~N~~I~~~ak-~gi~VNvv 121 (223)
T 3dfz_A 104 ---VNKFVKQHIK-NDQLVNMA 121 (223)
T ss_dssp ---HHHHHHHHSC-TTCEEEC-
T ss_pred ---HHHHHHHHHh-CCCEEEEe
Confidence 3555555566 55778875
|
| >2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A | Back alignment and structure |
|---|
Probab=96.42 E-value=0.0031 Score=62.06 Aligned_cols=86 Identities=16% Similarity=0.278 Sum_probs=57.5
Q ss_pred CCeEEEEecChhHHHHHHHHHcCCCEEEEECCCCCh-hHHHHcCCccc-----C---HHHH-hccCCEEEEcCCCCcccc
Q 006864 229 GKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPA-DKARAVGVELV-----S---FDQA-LATADFISLHMPLNPTTS 298 (628)
Q Consensus 229 GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~~g~~~~-----s---l~el-l~~aDvV~l~~Plt~~t~ 298 (628)
.+++.|+|+|.+|+.+|+.|...|. |+++|+.... +... .++..+ + |+++ +.+||.|++++|-.. .
T Consensus 9 ~~~viI~G~G~~G~~la~~L~~~g~-v~vid~~~~~~~~~~-~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~d~--~ 84 (234)
T 2aef_A 9 SRHVVICGWSESTLECLRELRGSEV-FVLAEDENVRKKVLR-SGANFVHGDPTRVSDLEKANVRGARAVIVDLESDS--E 84 (234)
T ss_dssp -CEEEEESCCHHHHHHHHHSTTSEE-EEEESCGGGHHHHHH-TTCEEEESCTTCHHHHHHTTCTTCSEEEECCSCHH--H
T ss_pred CCEEEEECCChHHHHHHHHHHhCCe-EEEEECCHHHHHHHh-cCCeEEEcCCCCHHHHHhcCcchhcEEEEcCCCcH--H
Confidence 4689999999999999999999999 9999987532 2222 454322 2 3344 778999999988432 3
Q ss_pred ccccHHHHhcCCCCcEEEEc
Q 006864 299 KIFNDETFAKMKKGVRIVNV 318 (628)
Q Consensus 299 ~li~~~~l~~mk~gailIN~ 318 (628)
++.-......+.+...+|--
T Consensus 85 n~~~~~~a~~~~~~~~iia~ 104 (234)
T 2aef_A 85 TIHCILGIRKIDESVRIIAE 104 (234)
T ss_dssp HHHHHHHHHHHCSSSEEEEE
T ss_pred HHHHHHHHHHHCCCCeEEEE
Confidence 33334445556676444443
|
| >4f2g_A Otcase 1, ornithine carbamoyltransferase 1; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=96.41 E-value=0.028 Score=58.34 Aligned_cols=127 Identities=14% Similarity=0.128 Sum_probs=83.3
Q ss_pred HHhcCceEEcCCCCChhhHHHHHHHHHHHHHHchhHHHHHHHcCcccccccceeeecCCeEEEEec-ChhHHHHHHHHHc
Q 006864 172 ATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGKTLAVMGF-GKVGSEVARRAKG 250 (628)
Q Consensus 172 a~~~GI~V~n~p~~~~~avAE~~l~l~L~~~R~i~~~~~~~~~g~W~~~~~~g~~l~GktiGIIGl-G~IG~~vA~~l~~ 250 (628)
|...+|+|+|+-+....++- +++=++.+.++ .| .+.|++|+++|= +++..+.+..+..
T Consensus 118 A~~~~vPVINag~~~~HPtQ--aLaDl~Ti~e~------------------~g-~l~glkva~vGD~~~va~Sl~~~~~~ 176 (309)
T 4f2g_A 118 AENSRVPVINGLTNEYHPCQ--VLADIFTYYEH------------------RG-PIRGKTVAWVGDANNMLYTWIQAARI 176 (309)
T ss_dssp HHTCSSCEEEEECSSCCHHH--HHHHHHHHHHH------------------HS-CCTTCEEEEESCCCHHHHHHHHHHHH
T ss_pred HHhCCCCEEECCCCccCcHH--HHHHHHHHHHH------------------hC-CCCCCEEEEECCCcchHHHHHHHHHH
Confidence 44467899998765544432 22222322221 12 478999999986 5788888889999
Q ss_pred CCCEEEEECCCC--C-hhH-HHHcCC--c-ccCHHHHhccCCEEEEcC--CCCcc----------ccccccHHHHhcCCC
Q 006864 251 LGMNVIAHDPYA--P-ADK-ARAVGV--E-LVSFDQALATADFISLHM--PLNPT----------TSKIFNDETFAKMKK 311 (628)
Q Consensus 251 ~G~~V~~~d~~~--~-~~~-a~~~g~--~-~~sl~ell~~aDvV~l~~--Plt~~----------t~~li~~~~l~~mk~ 311 (628)
||++|....|.. + .+. +++.|. . ..++++.++.||+|..-. ....+ ....++.+.++++|+
T Consensus 177 ~G~~v~~~~P~~~~~~~~~~~~~~g~~v~~~~d~~eav~~aDvvyt~~w~smg~e~~~~~r~~~~~~y~v~~~~l~~a~~ 256 (309)
T 4f2g_A 177 LDFKLQLSTPPGYALDAKLVDAESAPFYQVFDDPNEACKGADLVTTDVWTSMGFEAENEARKRAFADWCVDEEMMSHANS 256 (309)
T ss_dssp HTCEEEEECCGGGCCCGGGSCGGGGGGEEECSSHHHHTTTCSEEEECCC------------CCSGGGGCBCHHHHTTSCT
T ss_pred cCCEEEEECCcccCCCHHHHHHHcCCeEEEEcCHHHHhcCCCEEEecccccCcchhhHHHHHHHhcCceeCHHHHHhcCC
Confidence 999999988742 2 221 122332 2 238999999999998743 00010 124578999999999
Q ss_pred CcEEEEcC
Q 006864 312 GVRIVNVA 319 (628)
Q Consensus 312 gailIN~a 319 (628)
+++|.-|.
T Consensus 257 ~ai~mH~l 264 (309)
T 4f2g_A 257 DALFMHCL 264 (309)
T ss_dssp TCEEEECS
T ss_pred CeEEECCC
Confidence 99999985
|
| >4ep1_A Otcase, ornithine carbamoyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; 3.25A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=96.40 E-value=0.038 Score=58.10 Aligned_cols=128 Identities=20% Similarity=0.269 Sum_probs=84.8
Q ss_pred HHHhcCceEEcCCCCChhhHHHHHHHHHHHHHHchhHHHHHHHcCcccccccceeeecCCeEEEEec-ChhHHHHHHHHH
Q 006864 171 AATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGKTLAVMGF-GKVGSEVARRAK 249 (628)
Q Consensus 171 aa~~~GI~V~n~p~~~~~avAE~~l~l~L~~~R~i~~~~~~~~~g~W~~~~~~g~~l~GktiGIIGl-G~IG~~vA~~l~ 249 (628)
.|...+|+|+|+-+....++ .+++=++.+.++ .| .+.|++|+++|= +++..+.+..+.
T Consensus 142 lA~~~~vPVINag~~~~HPt--QaLaDl~TI~E~------------------~G-~l~glkva~vGD~~nva~Sl~~~~~ 200 (340)
T 4ep1_A 142 LAKESSIPVINGLTDDHHPC--QALADLMTIYEE------------------TN-TFKGIKLAYVGDGNNVCHSLLLASA 200 (340)
T ss_dssp HHHHCSSCEEEEECSSCCHH--HHHHHHHHHHHH------------------HS-CCTTCEEEEESCCCHHHHHHHHHHH
T ss_pred HHHhCCCCEEeCCCCCCCcH--HHHHHHHHHHHH------------------hC-CCCCCEEEEECCCchhHHHHHHHHH
Confidence 34556799999765443333 122223333331 12 378999999986 578888999999
Q ss_pred cCCCEEEEECCCC--C-hhH-------HHHcCCc--c-cCHHHHhccCCEEEEcCCCCc----c-------ccccccHHH
Q 006864 250 GLGMNVIAHDPYA--P-ADK-------ARAVGVE--L-VSFDQALATADFISLHMPLNP----T-------TSKIFNDET 305 (628)
Q Consensus 250 ~~G~~V~~~d~~~--~-~~~-------a~~~g~~--~-~sl~ell~~aDvV~l~~Plt~----~-------t~~li~~~~ 305 (628)
.||++|.+..|.. + .+. +++.|.. . .+++++++.||+|..-.=... + ....++.+.
T Consensus 201 ~~G~~v~~~~P~~~~~~~~~~~~~~~~a~~~G~~v~~~~d~~eav~~aDVvyt~~w~smg~e~~~~~~~~~~~y~vt~el 280 (340)
T 4ep1_A 201 KVGMHMTVATPVGYRPNEEIVKKALAIAKETGAEIEILHNPELAVNEADFIYTDVWMSMGQEGEEEKYTLFQPYQINKEL 280 (340)
T ss_dssp HHTCEEEEECCTTCCCCHHHHHHHHHHHHHHCCCEEEESCHHHHHTTCSEEEECCC------CHHHHHHHHGGGCBCHHH
T ss_pred HcCCEEEEECCcccCCCHHHHHHHHHHHHHcCCeEEEECCHHHHhCCCCEEEecCccCCCCCchHHHHHHhccccCCHHH
Confidence 9999999988753 2 221 1245633 2 389999999999987442110 0 124578889
Q ss_pred HhcCCCCcEEEEcC
Q 006864 306 FAKMKKGVRIVNVA 319 (628)
Q Consensus 306 l~~mk~gailIN~a 319 (628)
++.+|++++|.-|.
T Consensus 281 l~~ak~dai~MHcL 294 (340)
T 4ep1_A 281 VKHAKQTYHFLHCL 294 (340)
T ss_dssp HTTSCTTCEEEECS
T ss_pred HHhcCCCcEEECCC
Confidence 99999999999986
|
| >1oth_A Protein (ornithine transcarbamoylase); transferase; HET: PAO; 1.85A {Homo sapiens} SCOP: c.78.1.1 c.78.1.1 PDB: 1ep9_A 1fvo_A 1c9y_A* 1fb5_A | Back alignment and structure |
|---|
Probab=96.39 E-value=0.035 Score=57.99 Aligned_cols=127 Identities=17% Similarity=0.099 Sum_probs=84.4
Q ss_pred HHhcCceEEcCCCCChhhHHHHHHHHHHHHHHchhHHHHHHHcCcccccccceeeecCCeEEEEecC-hhHHHHHHHHHc
Q 006864 172 ATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGKTLAVMGFG-KVGSEVARRAKG 250 (628)
Q Consensus 172 a~~~GI~V~n~p~~~~~avAE~~l~l~L~~~R~i~~~~~~~~~g~W~~~~~~g~~l~GktiGIIGlG-~IG~~vA~~l~~ 250 (628)
|...+|+|+|+-+....++- +++=++.+.+++ | .+.|.+|+++|=| ++..+.+..+..
T Consensus 119 A~~~~vPVINa~~~~~HPtQ--aLaDl~Ti~e~~------------------g-~l~gl~va~vGD~~~va~Sl~~~~~~ 177 (321)
T 1oth_A 119 AKEASIPIINGLSDLYHPIQ--ILADYLTLQEHY------------------S-SLKGLTLSWIGDGNNILHSIMMSAAK 177 (321)
T ss_dssp HHHCSSCEEESCCSSCCHHH--HHHHHHHHHHHH------------------S-CCTTCEEEEESCSSHHHHHHHTTTGG
T ss_pred HHhCCCCEEcCCCCCCCcHH--HHHHHHHHHHHh------------------C-CcCCcEEEEECCchhhHHHHHHHHHH
Confidence 34457999998765544442 333333333321 2 4789999999985 588888888889
Q ss_pred CCCEEEEECCCC---ChhH---H----HHcCC--c-ccCHHHHhccCCEEEEcCCC--Ccc----------ccccccHHH
Q 006864 251 LGMNVIAHDPYA---PADK---A----RAVGV--E-LVSFDQALATADFISLHMPL--NPT----------TSKIFNDET 305 (628)
Q Consensus 251 ~G~~V~~~d~~~---~~~~---a----~~~g~--~-~~sl~ell~~aDvV~l~~Pl--t~~----------t~~li~~~~ 305 (628)
||++|.+..|.. +.+. + ++.|. . ..++++.++.||+|..-+-. ..+ ....++.+.
T Consensus 178 ~G~~v~~~~P~~~~~~~~~~~~~~~~a~~~G~~~~~~~d~~eav~~aDvvy~d~w~s~g~e~~~~~~~~~~~~y~v~~~~ 257 (321)
T 1oth_A 178 FGMHLQAATPKGYEPDASVTKLAEQYAKENGTKLLLTNDPLEAAHGGNVLITDTWISMGREEEKKKRLQAFQGYQVTMKT 257 (321)
T ss_dssp GTCEEEEECCTTCCCCHHHHHHHHHHHHHHTCCEEEESCHHHHHTTCSEEEECCSSCTTCGGGHHHHHHHTTTCCBCHHH
T ss_pred cCCeEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEECHHHHhccCCEEEEeccccccchhhhHHHHHhccCceECHHH
Confidence 999999988753 2221 1 13453 3 23899999999999984311 111 114568888
Q ss_pred HhcCCCCcEEEEcC
Q 006864 306 FAKMKKGVRIVNVA 319 (628)
Q Consensus 306 l~~mk~gailIN~a 319 (628)
++++|++++|.-|.
T Consensus 258 l~~a~~dai~mH~l 271 (321)
T 1oth_A 258 AKVAASDWTFLHCL 271 (321)
T ss_dssp HHTSCTTCEEEECS
T ss_pred HhhcCCCCEEECCC
Confidence 88888888888885
|
| >3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=96.38 E-value=0.0047 Score=65.08 Aligned_cols=64 Identities=16% Similarity=0.292 Sum_probs=49.7
Q ss_pred CCeEEEEecChhHHHHHHHHH-c-CCCEEE-EECCCCCh--hHHHHcC--Cc-ccCHHHHhc--cCCEEEEcCC
Q 006864 229 GKTLAVMGFGKVGSEVARRAK-G-LGMNVI-AHDPYAPA--DKARAVG--VE-LVSFDQALA--TADFISLHMP 292 (628)
Q Consensus 229 GktiGIIGlG~IG~~vA~~l~-~-~G~~V~-~~d~~~~~--~~a~~~g--~~-~~sl~ell~--~aDvV~l~~P 292 (628)
-.+|||||+|.||+..++.++ . -++++. ++|+.... ..++..| +. +.+++++++ +.|+|++++|
T Consensus 23 ~~rvgiIG~G~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~~g~~~~~~~~~~~ll~~~~~D~V~i~tp 96 (357)
T 3ec7_A 23 TLKAGIVGIGMIGSDHLRRLANTVSGVEVVAVCDIVAGRAQAALDKYAIEAKDYNDYHDLINDKDVEVVIITAS 96 (357)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTCTTEEEEEEECSSTTHHHHHHHHHTCCCEEESSHHHHHHCTTCCEEEECSC
T ss_pred eeeEEEECCcHHHHHHHHHHHhhCCCcEEEEEEeCCHHHHHHHHHHhCCCCeeeCCHHHHhcCCCCCEEEEcCC
Confidence 358999999999999999998 5 378876 57887643 2345556 33 348999998 4899999998
|
| >2p2s_A Putative oxidoreductase; YP_050235.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.25A {Pectobacterium atrosepticum SCRI1043} | Back alignment and structure |
|---|
Probab=96.37 E-value=0.011 Score=61.37 Aligned_cols=101 Identities=12% Similarity=0.147 Sum_probs=63.1
Q ss_pred CeEEEEecChhHH-HHHHHHHcCCCEEE-EECCCCC--hhHHHHc-CCc-ccCHHHHhc--cCCEEEEcCCCCccccccc
Q 006864 230 KTLAVMGFGKVGS-EVARRAKGLGMNVI-AHDPYAP--ADKARAV-GVE-LVSFDQALA--TADFISLHMPLNPTTSKIF 301 (628)
Q Consensus 230 ktiGIIGlG~IG~-~vA~~l~~~G~~V~-~~d~~~~--~~~a~~~-g~~-~~sl~ell~--~aDvV~l~~Plt~~t~~li 301 (628)
.++||||+|.+|. .++..++.-++++. ++|+... ...++.. ++. +.+++++++ +.|+|++++|-. +.
T Consensus 5 ~rvgiiG~G~~~~~~~~~~l~~~~~~lvav~d~~~~~~~~~a~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~--~h--- 79 (336)
T 2p2s_A 5 IRFAAIGLAHNHIYDMCQQLIDAGAELAGVFESDSDNRAKFTSLFPSVPFAASAEQLITDASIDLIACAVIPC--DR--- 79 (336)
T ss_dssp CEEEEECCSSTHHHHHHHHHHHTTCEEEEEECSCTTSCHHHHHHSTTCCBCSCHHHHHTCTTCCEEEECSCGG--GH---
T ss_pred cEEEEECCChHHHHHhhhhhcCCCcEEEEEeCCCHHHHHHHHHhcCCCcccCCHHHHhhCCCCCEEEEeCChh--hH---
Confidence 4899999999996 67777776789965 6787753 2334455 343 348999997 699999999933 22
Q ss_pred cHHHHhcCCCCc-EEEEc-CCCchhcHHHHHHHHhC
Q 006864 302 NDETFAKMKKGV-RIVNV-ARGGVIDEEALVRALDS 335 (628)
Q Consensus 302 ~~~~l~~mk~ga-ilIN~-aRg~~vde~aL~~aL~~ 335 (628)
-+-..+.|+.|. +++.- ---.+-+.+.|.++.++
T Consensus 80 ~~~~~~al~aGkhVl~EKP~a~~~~e~~~l~~~a~~ 115 (336)
T 2p2s_A 80 AELALRTLDAGKDFFTAKPPLTTLEQLDAVQRRVAE 115 (336)
T ss_dssp HHHHHHHHHTTCEEEECSSCCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCcEEEeCCCCCCHHHHHHHHHHHHH
Confidence 122233345554 44442 12233344556665544
|
| >1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=96.33 E-value=0.0056 Score=63.82 Aligned_cols=112 Identities=18% Similarity=0.133 Sum_probs=67.5
Q ss_pred CCeEEEEecChhHHHHHHHHHcCCC--EEEEECCCCCh--hHHHHcC--C------cc-cCHHHHhccCCEEEEcCCCCc
Q 006864 229 GKTLAVMGFGKVGSEVARRAKGLGM--NVIAHDPYAPA--DKARAVG--V------EL-VSFDQALATADFISLHMPLNP 295 (628)
Q Consensus 229 GktiGIIGlG~IG~~vA~~l~~~G~--~V~~~d~~~~~--~~a~~~g--~------~~-~sl~ell~~aDvV~l~~Plt~ 295 (628)
.++|+|||.|.+|..+|..+...|. +|..||..... ..+.++. . .. .+-.+.++.||+|+++.+...
T Consensus 7 ~~KI~IiGaG~vG~~~a~~l~~~~~~~ev~L~Di~~~~~~g~~~dl~~~~~~~~~~~i~~~~~~a~~~aDvVii~~g~p~ 86 (318)
T 1y6j_A 7 RSKVAIIGAGFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYAGDYSDVKDCDVIVVTAGANR 86 (318)
T ss_dssp CCCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC--CGGGGTTCSEEEECCCC--
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHhHHhcCCeEEEECCHHHhCCCCEEEEcCCCCC
Confidence 3689999999999999999998887 99999976421 1122211 1 11 123567899999999998533
Q ss_pred ccccc-------cc-------HHHHhcCCCCcEEEEcCCCchhcHHHHHHH--HhCCCeeEE
Q 006864 296 TTSKI-------FN-------DETFAKMKKGVRIVNVARGGVIDEEALVRA--LDSGVVAQA 341 (628)
Q Consensus 296 ~t~~l-------i~-------~~~l~~mk~gailIN~aRg~~vde~aL~~a--L~~g~i~ga 341 (628)
..++ .| .+.+....|++++++++-.-=+....+.+. +...++.|.
T Consensus 87 -k~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~tNPv~~~~~~~~k~s~~p~~rviG~ 147 (318)
T 1y6j_A 87 -KPGETRLDLAKKNVMIAKEVTQNIMKYYNHGVILVVSNPVDIITYMIQKWSGLPVGKVIGS 147 (318)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHCCSCEEEECSSSHHHHHHHHHHHHTCCTTTEEEC
T ss_pred -CCCcCHHHHHHhhHHHHHHHHHHHHHhCCCcEEEEecCcHHHHHHHHHHHcCCCHHHEecc
Confidence 2222 01 122333468999999753322334444444 345578776
|
| >4a8t_A Putrescine carbamoyltransferase; trabnsferase PALO, delta-N-(phosphonoacetyl)-L- ornithine, agmatine deiminase route, agmatine catabolism; HET: PAO PGE; 1.59A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=96.31 E-value=0.057 Score=56.76 Aligned_cols=130 Identities=15% Similarity=0.186 Sum_probs=83.6
Q ss_pred HHHhcCceEEcCCCCChhhHHHHHHHHHHHHHHchhHHHHHHHcCcccccccceeeecCCeEEEEec-ChhHHHHHHHHH
Q 006864 171 AATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGKTLAVMGF-GKVGSEVARRAK 249 (628)
Q Consensus 171 aa~~~GI~V~n~p~~~~~avAE~~l~l~L~~~R~i~~~~~~~~~g~W~~~~~~g~~l~GktiGIIGl-G~IG~~vA~~l~ 249 (628)
.|...+|+|+|+-+....++ .+++=++.+.++++ .|..+.|++|+++|= +++..+.+..+.
T Consensus 135 lA~~~~vPVINag~~~~HPt--QaLaDl~Ti~e~~~----------------~G~~l~glkva~vGD~~rva~Sl~~~~~ 196 (339)
T 4a8t_A 135 LANCATIPVINGMSDYNHPT--QELGDLCTMVEHLP----------------EGKKLEDCKVVFVGDATQVCFSLGLITT 196 (339)
T ss_dssp HHHHCSSCEEECCCSSCCHH--HHHHHHHHHHHTCC----------------TTCCGGGCEEEEESSCCHHHHHHHHHHH
T ss_pred HHHhCCCCEEECCCCCcCcH--HHHHHHHHHHHHhh----------------cCCCCCCCEEEEECCCchhHHHHHHHHH
Confidence 34456799999876543333 12222333333210 032588999999986 688899999999
Q ss_pred cCCCEEEEECCCC--Ch-hH-------HHHcCCc--c-cCHHHHhccCCEEEEcC--CCCc--cc----------ccccc
Q 006864 250 GLGMNVIAHDPYA--PA-DK-------ARAVGVE--L-VSFDQALATADFISLHM--PLNP--TT----------SKIFN 302 (628)
Q Consensus 250 ~~G~~V~~~d~~~--~~-~~-------a~~~g~~--~-~sl~ell~~aDvV~l~~--Plt~--~t----------~~li~ 302 (628)
.||++|....|.. +. .. ++..|.. . .+++ .++.||+|..-+ ...+ +. ...++
T Consensus 197 ~~G~~v~~~~P~~~~~~~~~~~~~~~~a~~~g~~v~~~~d~~-av~~aDvvytd~w~smg~~~~~~~er~~~~~~~y~vt 275 (339)
T 4a8t_A 197 KMGMNFVHFGPEGFQLNEEHQAKLAKNCEVSGGSFLVTDDAS-SVEGADFLYTDVWYGLYEAELSEEERMKVFYPKYQVN 275 (339)
T ss_dssp HTTCEEEEECCTTSSCCHHHHHHHHHHHHHHCCEEEEECCGG-GGTTCSEEEECCSSCCTTSCCCHHHHHHHHTTTTCBC
T ss_pred HcCCEEEEECCcccCCCHHHHHHHHHHHHHcCCEEEEECChh-HHcCCCEEEecCcccCCchhhhhHHHHHHhccccccC
Confidence 9999999988753 22 11 2334533 2 3788 999999998732 1111 10 14567
Q ss_pred HHHHhcCCCCcEEEEcC
Q 006864 303 DETFAKMKKGVRIVNVA 319 (628)
Q Consensus 303 ~~~l~~mk~gailIN~a 319 (628)
.+.++++|++++|.-|.
T Consensus 276 ~ell~~ak~dai~mHcL 292 (339)
T 4a8t_A 276 QEMMDRAGANCKFMHCL 292 (339)
T ss_dssp HHHHHHHCTTCEEEECS
T ss_pred HHHHHhcCCCcEEECCC
Confidence 88888888888888885
|
| >3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A* | Back alignment and structure |
|---|
Probab=96.31 E-value=0.017 Score=66.96 Aligned_cols=130 Identities=19% Similarity=0.262 Sum_probs=88.8
Q ss_pred CeEEEEecChhHHHHHHHHHcCCCEEEEECCCCCh-hHHHH---------------cCC-------cccCHHHHhccCCE
Q 006864 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPA-DKARA---------------VGV-------ELVSFDQALATADF 286 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~---------------~g~-------~~~sl~ell~~aDv 286 (628)
+++||||.|.||+.+|..+...|++|+.+|+.... +.+.. ... ...+-.+.+++||+
T Consensus 317 ~~v~ViGaG~MG~gIA~~~a~aG~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aDl 396 (742)
T 3zwc_A 317 SSVGVLGLGTMGRGIAISFARVGISVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRFSSSTKELSTVDL 396 (742)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCCEEEESCGGGGGSCSE
T ss_pred cEEEEEcccHHHHHHHHHHHhCCCchhcccchHhhhhhHHHHHHHHHHHHHHhccccchhhhhhhhcccCcHHHHhhCCE
Confidence 79999999999999999999999999999986421 11100 000 11222345789999
Q ss_pred EEEcCCCCccccccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhCC-CeeEEEeeccCCCCCCCCCccccCCcEEE
Q 006864 287 ISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSG-VVAQAALDVFTEEPPAKDSKLVQHENVTV 365 (628)
Q Consensus 287 V~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~~vde~aL~~aL~~g-~i~ga~lDV~~~EP~~~~~~L~~~~nvil 365 (628)
|+=++|-+-+.+.-+-++.=+.++++++|-...++ +.-..|.++++.. ++ +++..|.+-| --||.+ ||-
T Consensus 397 VIEAV~E~l~iK~~vf~~le~~~~~~aIlASNTSs--l~i~~ia~~~~~p~r~--ig~HFfnP~~---~m~LVE---vi~ 466 (742)
T 3zwc_A 397 VVEAVFEDMNLKKKVFAELSALCKPGAFLCTNTSA--LNVDDIASSTDRPQLV--IGTHFFSPAH---VMRLLE---VIP 466 (742)
T ss_dssp EEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSS--SCHHHHHTTSSCGGGE--EEEECCSSTT---TCCEEE---EEE
T ss_pred EEEeccccHHHHHHHHHHHhhcCCCCceEEecCCc--CChHHHHhhcCCcccc--ccccccCCCC---CCceEE---Eec
Confidence 99999988877776666666679999998876555 4444566666432 44 6677665332 235555 676
Q ss_pred cCCC
Q 006864 366 TPHL 369 (628)
Q Consensus 366 TPHi 369 (628)
+++.
T Consensus 467 g~~T 470 (742)
T 3zwc_A 467 SRYS 470 (742)
T ss_dssp CSSC
T ss_pred CCCC
Confidence 6653
|
| >2dvm_A Malic enzyme, 439AA long hypothetical malate oxidoreductase; NAD, structural genomics, NPPSFA; HET: NAD MES; 1.60A {Pyrococcus horikoshii} PDB: 1ww8_A* | Back alignment and structure |
|---|
Probab=96.27 E-value=0.0063 Score=66.26 Aligned_cols=109 Identities=21% Similarity=0.170 Sum_probs=77.8
Q ss_pred eeeecCCeEEEEecChhHHHHHHHHHcCCC---EEEEEC----CC--CChh-H---HH----H----cCC--cccCHHHH
Q 006864 224 GVSLVGKTLAVMGFGKVGSEVARRAKGLGM---NVIAHD----PY--APAD-K---AR----A----VGV--ELVSFDQA 280 (628)
Q Consensus 224 g~~l~GktiGIIGlG~IG~~vA~~l~~~G~---~V~~~d----~~--~~~~-~---a~----~----~g~--~~~sl~el 280 (628)
|..+.++++.|+|.|..|+.+++.|...|. +|+.+| +. .... . .. . .+. ...++.+.
T Consensus 181 g~~l~~~rvlvlGAGgAg~aia~~L~~~G~~~~~I~vvd~~~~R~G~~~~a~~~~~L~~~~~~~a~~~~~~~~~~~L~e~ 260 (439)
T 2dvm_A 181 GKKISEITLALFGAGAAGFATLRILTEAGVKPENVRVVELVNGKPRILTSDLDLEKLFPYRGWLLKKTNGENIEGGPQEA 260 (439)
T ss_dssp TCCTTTCCEEEECCSHHHHHHHHHHHHTTCCGGGEEEEEEETTEEEECCTTSCHHHHSTTCHHHHTTSCTTCCCSSHHHH
T ss_pred CCCccCCEEEEECccHHHHHHHHHHHHcCCCcCeEEEEEccCCCcCccccccchhHHHHHHHHHhhccccccccccHHHH
Confidence 456788999999999999999999999998 799999 65 2111 1 10 1 111 13468899
Q ss_pred hccCCEEEEcCCCCccccccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhCCC
Q 006864 281 LATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGV 337 (628)
Q Consensus 281 l~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~~vde~aL~~aL~~g~ 337 (628)
++++|+++.+.|..+ +++.++.++.|+++.++++++... .+.-+.+|.+.|.
T Consensus 261 l~~aDVlInaT~~~~---G~~~~e~v~~m~~~~iVfDLynP~--~t~~~~~A~~~G~ 312 (439)
T 2dvm_A 261 LKDADVLISFTRPGP---GVIKPQWIEKMNEDAIVFPLANPV--PEILPEEAKKAGA 312 (439)
T ss_dssp HTTCSEEEECSCCCS---SSSCHHHHTTSCTTCEEEECCSSS--CSSCHHHHHHHTC
T ss_pred hccCCEEEEcCCCcc---CCCChHHHHhcCCCCEEEECCCCC--CcchHHHHHHcCC
Confidence 999999999998532 566667788899999999995433 3333444444453
|
| >3fef_A Putative glucosidase LPLD; gulosidase, structural genomics, unknown function, glycosidase, hydrolase, manganese, metal-binding, NAD, PSI- 2; 2.20A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=96.25 E-value=0.0078 Score=65.77 Aligned_cols=112 Identities=15% Similarity=0.163 Sum_probs=74.2
Q ss_pred cCCeEEEEecChh--HHHHHHHHHc----CCCEEEEECCCCCh-hHHHHc---------CCcc-cCHHHHhccCCEEEEc
Q 006864 228 VGKTLAVMGFGKV--GSEVARRAKG----LGMNVIAHDPYAPA-DKARAV---------GVEL-VSFDQALATADFISLH 290 (628)
Q Consensus 228 ~GktiGIIGlG~I--G~~vA~~l~~----~G~~V~~~d~~~~~-~~a~~~---------g~~~-~sl~ell~~aDvV~l~ 290 (628)
..++|+|||.|.+ |..++..+.. .| +|..||..... +..... .+.. .+++++++.||||+++
T Consensus 4 ~~~KIaVIGaGs~g~g~~la~~l~~~~~~~g-eV~L~Di~~e~le~~~~~~~~l~~~~~~I~~TtD~~eAl~dADfVI~a 82 (450)
T 3fef_A 4 DQIKIAYIGGGSQGWARSLMSDLSIDERMSG-TVALYDLDFEAAQKNEVIGNHSGNGRWRYEAVSTLKKALSAADIVIIS 82 (450)
T ss_dssp CCEEEEEETTTCSSHHHHHHHHHHHCSSCCE-EEEEECSSHHHHHHHHHHHTTSTTSCEEEEEESSHHHHHTTCSEEEEC
T ss_pred CCCEEEEECCChhHhHHHHHHHHHhccccCC-eEEEEeCCHHHHHHHHHHHHHHhccCCeEEEECCHHHHhcCCCEEEec
Confidence 4569999999998 5788877653 46 99999986421 111111 1222 3799999999999999
Q ss_pred CCCC-----------ccccccccH------------------------HHHhcCCCCcEEEEcCCCchhcHHHHHHHHhC
Q 006864 291 MPLN-----------PTTSKIFND------------------------ETFAKMKKGVRIVNVARGGVIDEEALVRALDS 335 (628)
Q Consensus 291 ~Plt-----------~~t~~li~~------------------------~~l~~mk~gailIN~aRg~~vde~aL~~aL~~ 335 (628)
++.. |.-.++... ..+....|++++||.+..-=+-..++.+.+..
T Consensus 83 irvG~~~~~~~De~ip~k~G~~~~vget~g~GGi~~alr~~~i~~~i~~~i~~~~p~a~~i~~tNPvdi~t~~~~k~~p~ 162 (450)
T 3fef_A 83 ILPGSLDDMEVDVHLPERCGIYQSVGDTVGPGGIIRGLRAVPIFAEIARAIRDYAPESWVINYTNPMSVCTRVLYKVFPG 162 (450)
T ss_dssp CCSSCHHHHHHHHHGGGGGTCCCSSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECCSSHHHHHHHHHHHCTT
T ss_pred cccCCcccchhhhhhhhccCccccchhhcCCchhhcccccHHHHHHHHHHHHHHCCCeEEEEecCchHHHHHHHHHHCCC
Confidence 9642 223333211 23444568999999987666666676665555
Q ss_pred CCeeE
Q 006864 336 GVVAQ 340 (628)
Q Consensus 336 g~i~g 340 (628)
.++.|
T Consensus 163 ~rviG 167 (450)
T 3fef_A 163 IKAIG 167 (450)
T ss_dssp CEEEE
T ss_pred CCEEE
Confidence 56666
|
| >1h6d_A Precursor form of glucose-fructose oxidoreductase; protein translocation, periplasmic oxidoreductase, signal peptide, ligand binding,; HET: NDP; 2.05A {Zymomonas mobilis} SCOP: c.2.1.3 d.81.1.5 PDB: 1h6b_A* 1h6a_A* 1h6c_A* 1ryd_A* 1rye_A* 1ofg_A* 1evj_A* | Back alignment and structure |
|---|
Probab=96.25 E-value=0.0046 Score=67.05 Aligned_cols=64 Identities=20% Similarity=0.240 Sum_probs=48.2
Q ss_pred CeEEEEecChhHH-HHHHHHHcC-CCEEE-EECCCCCh--hHHHHcCCc------ccCHHHHhc--cCCEEEEcCCC
Q 006864 230 KTLAVMGFGKVGS-EVARRAKGL-GMNVI-AHDPYAPA--DKARAVGVE------LVSFDQALA--TADFISLHMPL 293 (628)
Q Consensus 230 ktiGIIGlG~IG~-~vA~~l~~~-G~~V~-~~d~~~~~--~~a~~~g~~------~~sl~ell~--~aDvV~l~~Pl 293 (628)
.+|||||+|.||+ .+++.++.. ++++. ++|+.... ..++..|+. +.+++++++ +.|+|++++|-
T Consensus 84 irigiIG~G~~g~~~~~~~l~~~~~~~lvav~d~~~~~~~~~a~~~g~~~~~~~~~~~~~~ll~~~~vD~V~iatp~ 160 (433)
T 1h6d_A 84 FGYAIVGLGKYALNQILPGFAGCQHSRIEALVSGNAEKAKIVAAEYGVDPRKIYDYSNFDKIAKDPKIDAVYIILPN 160 (433)
T ss_dssp EEEEEECCSHHHHHTHHHHTTTCSSEEEEEEECSCHHHHHHHHHHTTCCGGGEECSSSGGGGGGCTTCCEEEECSCG
T ss_pred eEEEEECCcHHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHHhCCCcccccccCCHHHHhcCCCCCEEEEcCCc
Confidence 4899999999997 899988865 57764 67876422 223445653 348999997 79999999983
|
| >3grf_A Ornithine carbamoyltransferase; ornithine transcarbamoylase, arginine degradation pathway, giardia lamblia, drug target; 2.00A {Giardia intestinalis} | Back alignment and structure |
|---|
Probab=96.25 E-value=0.045 Score=57.29 Aligned_cols=134 Identities=15% Similarity=0.124 Sum_probs=85.5
Q ss_pred HHhcCceEEcCCCCChhhHHHHHHHHHHHHHHchhHHHHHHHcCcccccccceeeecCCeEEEEecC--hhHHHHHHHHH
Q 006864 172 ATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGKTLAVMGFG--KVGSEVARRAK 249 (628)
Q Consensus 172 a~~~GI~V~n~p~~~~~avAE~~l~l~L~~~R~i~~~~~~~~~g~W~~~~~~g~~l~GktiGIIGlG--~IG~~vA~~l~ 249 (628)
|...+|+|+|+-.....++ .+++=++.+.+++. |.. .....+.|++|+++|=| ++..+.+..+.
T Consensus 118 A~~~~vPVINag~~~~HPt--QaLaDl~Ti~e~~g----------~~~--~~~~~l~gl~va~vGD~~~~va~Sl~~~~~ 183 (328)
T 3grf_A 118 AQHASVPCINALDDFGHPL--QMVCDFMTIKEKFT----------AAG--EFSNGFKGIKFAYCGDSMNNVTYDLMRGCA 183 (328)
T ss_dssp HHHCSSCEEESSCSSCCHH--HHHHHHHHHHHHHH----------HTT--CCTTTGGGCCEEEESCCSSHHHHHHHHHHH
T ss_pred HHhCCCCEEeCCCCCCCcH--HHHHHHHHHHHHhC----------Ccc--ccccccCCcEEEEeCCCCcchHHHHHHHHH
Confidence 4445789999876554333 22333333333221 100 01124889999999986 88999999999
Q ss_pred cCCCEEEEECCCC----Ch-h---HHH----H--cCCc--c-cCHHHHhccCCEEEEc----CCCCcc---------ccc
Q 006864 250 GLGMNVIAHDPYA----PA-D---KAR----A--VGVE--L-VSFDQALATADFISLH----MPLNPT---------TSK 299 (628)
Q Consensus 250 ~~G~~V~~~d~~~----~~-~---~a~----~--~g~~--~-~sl~ell~~aDvV~l~----~Plt~~---------t~~ 299 (628)
.||++|.+..|.. +. + .++ + .|.. . .++++.++.||+|..- +-..++ ...
T Consensus 184 ~~G~~v~~~~P~~~~~~p~~~~~~~~~~~~~~~~~g~~v~~~~d~~eav~~aDvvytd~W~sm~iq~er~~~~~~~~~~y 263 (328)
T 3grf_A 184 LLGMECHVCCPDHKDFKPIKEVIDECEEIIAKHGTGGSIKIFHDCKKGCEGVDVVYTDSWMSYHITKEQKEARLKVLTPF 263 (328)
T ss_dssp HHTCEEEEECCSSGGGSCCHHHHHHHHHHHHHHTCCCEEEEESSHHHHHTTCSEEEECCCC--------CCTHHHHHGGG
T ss_pred HcCCEEEEECChHhhhCCCHHHHHHHHHHHhhccCCCeEEEEcCHHHHhcCCCEEEecCccccCCcHHHHHHHHHHhcCC
Confidence 9999999988743 11 1 112 2 3532 2 3899999999999863 221111 124
Q ss_pred cccHHHHhcCCCCcEEEEcC
Q 006864 300 IFNDETFAKMKKGVRIVNVA 319 (628)
Q Consensus 300 li~~~~l~~mk~gailIN~a 319 (628)
.++.+.++++|++++|.-|.
T Consensus 264 ~vt~~~l~~a~~~ai~mH~l 283 (328)
T 3grf_A 264 QVDDAVMAVTSKRSIFMNCL 283 (328)
T ss_dssp CBCHHHHTTSCTTCEEEECS
T ss_pred CCCHHHHHhcCCCCEEECCC
Confidence 57889999999999999985
|
| >3qy9_A DHPR, dihydrodipicolinate reductase; rossmann fold, NADH, NADPH, oxidoreductase; 1.80A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=96.22 E-value=0.0074 Score=60.65 Aligned_cols=80 Identities=16% Similarity=0.194 Sum_probs=54.9
Q ss_pred CeEEEEecChhHHHHHHHHHcCCCEEEE-ECCCCChhHHHHcCCccc-CHHHHhccCCEEEEcCCCCccccccccHHHHh
Q 006864 230 KTLAVMGFGKVGSEVARRAKGLGMNVIA-HDPYAPADKARAVGVELV-SFDQALATADFISLHMPLNPTTSKIFNDETFA 307 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~G~~V~~-~d~~~~~~~a~~~g~~~~-sl~ell~~aDvV~l~~Plt~~t~~li~~~~l~ 307 (628)
.+|+|+|+|+||+.+++.+...+.++.+ +|+.... ..|+... ++++++ ++|+|+-..+ |+.. .+.+.
T Consensus 4 mkI~ViGaGrMG~~i~~~l~~~~~eLva~~d~~~~~----~~gv~v~~dl~~l~-~~DVvIDft~--p~a~----~~~~~ 72 (243)
T 3qy9_A 4 MKILLIGYGAMNQRVARLAEEKGHEIVGVIENTPKA----TTPYQQYQHIADVK-GADVAIDFSN--PNLL----FPLLD 72 (243)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEECSSCC------CCSCBCSCTTTCT-TCSEEEECSC--HHHH----HHHHT
T ss_pred eEEEEECcCHHHHHHHHHHHhCCCEEEEEEecCccc----cCCCceeCCHHHHh-CCCEEEEeCC--hHHH----HHHHH
Confidence 5899999999999999999877657665 7876532 3566544 788888 9999874442 2211 12333
Q ss_pred cCCCCcEEEEcCCC
Q 006864 308 KMKKGVRIVNVARG 321 (628)
Q Consensus 308 ~mk~gailIN~aRg 321 (628)
++.|.-+|....|
T Consensus 73 -l~~g~~vVigTTG 85 (243)
T 3qy9_A 73 -EDFHLPLVVATTG 85 (243)
T ss_dssp -SCCCCCEEECCCS
T ss_pred -HhcCCceEeCCCC
Confidence 7778777765554
|
| >1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A* | Back alignment and structure |
|---|
Probab=96.22 E-value=0.0056 Score=64.65 Aligned_cols=88 Identities=20% Similarity=0.262 Sum_probs=64.1
Q ss_pred cCCeEEEEecChhHHHHHHHHHcCCCEEEEECCCCC-hhHHH-HcCCccc----C---HHHHhccCCEEEEcCCCCcccc
Q 006864 228 VGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAP-ADKAR-AVGVELV----S---FDQALATADFISLHMPLNPTTS 298 (628)
Q Consensus 228 ~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~-~~g~~~~----s---l~ell~~aDvV~l~~Plt~~t~ 298 (628)
.|+++.|+|.|.||..+++.++.+|++|++.++... .+.+. ++|...+ + +.++....|+|+-++.....
T Consensus 187 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~lGa~~v~~~~~~~~~~~~~~~~D~vid~~g~~~~-- 264 (366)
T 1yqd_A 187 PGKHIGIVGLGGLGHVAVKFAKAFGSKVTVISTSPSKKEEALKNFGADSFLVSRDQEQMQAAAGTLDGIIDTVSAVHP-- 264 (366)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGGGHHHHHHTSCCSEEEETTCHHHHHHTTTCEEEEEECCSSCCC--
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcCCceEEeccCHHHHHHhhCCCCEEEECCCcHHH--
Confidence 588999999999999999999999999999987653 23334 6675422 2 33344567888888764321
Q ss_pred ccccHHHHhcCCCCcEEEEcCC
Q 006864 299 KIFNDETFAKMKKGVRIVNVAR 320 (628)
Q Consensus 299 ~li~~~~l~~mk~gailIN~aR 320 (628)
-...++.|+++..+++++.
T Consensus 265 ---~~~~~~~l~~~G~iv~~g~ 283 (366)
T 1yqd_A 265 ---LLPLFGLLKSHGKLILVGA 283 (366)
T ss_dssp ---SHHHHHHEEEEEEEEECCC
T ss_pred ---HHHHHHHHhcCCEEEEEcc
Confidence 2456777888888888874
|
| >1ml4_A Aspartate transcarbamoylase; beta pleated sheet, protein inhibitor complex, transferase; HET: PAL; 1.80A {Pyrococcus abyssi} SCOP: c.78.1.1 c.78.1.1 | Back alignment and structure |
|---|
Probab=96.21 E-value=0.017 Score=59.99 Aligned_cols=94 Identities=15% Similarity=0.218 Sum_probs=68.8
Q ss_pred eecCCeEEEEec---ChhHHHHHHHHHcCCCEEEEECCCC--Chh----HHHHcCCcc---cCHHHHhccCCEEEEcCCC
Q 006864 226 SLVGKTLAVMGF---GKVGSEVARRAKGLGMNVIAHDPYA--PAD----KARAVGVEL---VSFDQALATADFISLHMPL 293 (628)
Q Consensus 226 ~l~GktiGIIGl---G~IG~~vA~~l~~~G~~V~~~d~~~--~~~----~a~~~g~~~---~sl~ell~~aDvV~l~~Pl 293 (628)
.+.|++|+++|= |++..+++..+..||++|....|.. +.. .+++.|... .+++++++.||+|..-.=-
T Consensus 152 ~l~gl~va~vGD~~~~rva~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~d~~eav~~aDvvyt~~~q 231 (308)
T 1ml4_A 152 RIDGLKIGLLGDLKYGRTVHSLAEALTFYDVELYLISPELLRMPRHIVEELREKGMKVVETTTLEDVIGKLDVLYVTRIQ 231 (308)
T ss_dssp CSSSEEEEEESCTTTCHHHHHHHHHGGGSCEEEEEECCGGGCCCHHHHHHHHHTTCCEEEESCTHHHHTTCSEEEECCCC
T ss_pred CCCCeEEEEeCCCCcCchHHHHHHHHHHCCCEEEEECCccccCCHHHHHHHHHcCCeEEEEcCHHHHhcCCCEEEECCcc
Confidence 478999999998 4899999999999999999988753 221 233446542 3799999999999885421
Q ss_pred Cc------c-----ccccccHHHHhcCCCCcEEEEcC
Q 006864 294 NP------T-----TSKIFNDETFAKMKKGVRIVNVA 319 (628)
Q Consensus 294 t~------~-----t~~li~~~~l~~mk~gailIN~a 319 (628)
.+ + ....++.+.++++|++++|.-|.
T Consensus 232 ~er~~~~~~~~~~~~~y~v~~~ll~~a~~~ai~mH~l 268 (308)
T 1ml4_A 232 KERFPDEQEYLKVKGSYQVNLKVLEKAKDELRIMHPL 268 (308)
T ss_dssp GGGSSSHHHHHTTTTCCCBCTTGGGGSCTTCEEECCS
T ss_pred ccccCCHHHHHHHhcCcccCHHHHhhcCCCCEEECCC
Confidence 11 0 02456777888888888888875
|
| >3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis} | Back alignment and structure |
|---|
Probab=96.19 E-value=0.019 Score=60.05 Aligned_cols=112 Identities=14% Similarity=0.182 Sum_probs=69.2
Q ss_pred cCCeEEEEecChhHHHHHHHHHcCCC-EEEEECCCCChhH--HHHc---------CCcc--cCHHHHhccCCEEEEcCCC
Q 006864 228 VGKTLAVMGFGKVGSEVARRAKGLGM-NVIAHDPYAPADK--ARAV---------GVEL--VSFDQALATADFISLHMPL 293 (628)
Q Consensus 228 ~GktiGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~~~~~--a~~~---------g~~~--~sl~ell~~aDvV~l~~Pl 293 (628)
..++|+|||.|.+|..+|..+...|+ +|..+|....... +.++ .... .+-.+.++.||+|+++.+.
T Consensus 4 ~~~kI~iiGaG~vG~~~a~~l~~~~~~~v~l~Di~~~~~~g~a~dL~~~~~~~~~~~~v~~t~d~~a~~~aDvVIi~ag~ 83 (321)
T 3p7m_A 4 ARKKITLVGAGNIGGTLAHLALIKQLGDVVLFDIAQGMPNGKALDLLQTCPIEGVDFKVRGTNDYKDLENSDVVIVTAGV 83 (321)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCGGGGTTCSEEEECCSC
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCChHHHHHHHHHHHhhhhhcCCCcEEEEcCCHHHHCCCCEEEEcCCc
Confidence 45799999999999999999987776 9999998754321 1111 1111 2335789999999999763
Q ss_pred Ccccccc-----c--cH-------HHHhcCCCCcEEEEcCCCchhcHH--HHHHH--HhCCCeeEEE
Q 006864 294 NPTTSKI-----F--ND-------ETFAKMKKGVRIVNVARGGVIDEE--ALVRA--LDSGVVAQAA 342 (628)
Q Consensus 294 t~~t~~l-----i--~~-------~~l~~mk~gailIN~aRg~~vde~--aL~~a--L~~g~i~ga~ 342 (628)
. ...++ + |. +.+....|++++++++ ..+|.- .+.+. +...++.|.+
T Consensus 84 p-~k~G~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vivvt--NPvd~~t~~~~k~sg~p~~rviG~~ 147 (321)
T 3p7m_A 84 P-RKPGMSRDDLLGINIKVMQTVGEGIKHNCPNAFVICIT--NPLDIMVNMLQKFSGVPDNKIVGMA 147 (321)
T ss_dssp C-CCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECC--SSHHHHHHHHHHHHCCCGGGEEEEC
T ss_pred C-CCCCCCHHHHHHHhHHHHHHHHHHHHHHCCCcEEEEec--CchHHHHHHHHHhcCCCHHHEEeec
Confidence 2 22222 1 11 1233345889999995 444443 33333 2224566654
|
| >1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A* | Back alignment and structure |
|---|
Probab=96.19 E-value=0.0051 Score=63.84 Aligned_cols=89 Identities=18% Similarity=0.229 Sum_probs=57.2
Q ss_pred CeEEEEecChhHHHHHHHHHcCCC-EEEEECCCCChhHH--HHc---------C--Ccc-cCHHHHhccCCEEEEcCCCC
Q 006864 230 KTLAVMGFGKVGSEVARRAKGLGM-NVIAHDPYAPADKA--RAV---------G--VEL-VSFDQALATADFISLHMPLN 294 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~~~~~a--~~~---------g--~~~-~sl~ell~~aDvV~l~~Plt 294 (628)
++|+|||.|.+|..+|..+...|+ +|..+|........ .++ . +.. .++ +.++.||+|+++++..
T Consensus 3 ~kI~VIGaG~vG~~~a~~la~~g~~~v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d~-~a~~~aD~Vi~a~g~p 81 (309)
T 1ur5_A 3 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGTNNY-ADTANSDVIVVTSGAP 81 (309)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCG-GGGTTCSEEEECCCC-
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCeEEEEeCCccHHHHHHHhHHHhHhhcCCCeEEEECCCH-HHHCCCCEEEEcCCCC
Confidence 589999999999999999998886 99999976532111 111 1 112 356 6789999999998643
Q ss_pred cccccc-------cc----H---HHHhcCCCCcEEEEcCC
Q 006864 295 PTTSKI-------FN----D---ETFAKMKKGVRIVNVAR 320 (628)
Q Consensus 295 ~~t~~l-------i~----~---~~l~~mk~gailIN~aR 320 (628)
. ..++ .| + +.+....|++++++++-
T Consensus 82 ~-~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~vi~~tN 120 (309)
T 1ur5_A 82 R-KPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVNN 120 (309)
T ss_dssp --------CHHHHHHHHHHHHHHHHHGGGCTTCEEEECCS
T ss_pred C-CCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEcCC
Confidence 2 2221 01 1 12333458889998743
|
| >1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T* | Back alignment and structure |
|---|
Probab=96.18 E-value=0.012 Score=60.61 Aligned_cols=112 Identities=16% Similarity=0.142 Sum_probs=67.0
Q ss_pred CCeEEEEecChhHHHHHHHHHcCCC--EEEEECCCCChhH--HH--HcCC------c--ccCHHHHhccCCEEEEcCCCC
Q 006864 229 GKTLAVMGFGKVGSEVARRAKGLGM--NVIAHDPYAPADK--AR--AVGV------E--LVSFDQALATADFISLHMPLN 294 (628)
Q Consensus 229 GktiGIIGlG~IG~~vA~~l~~~G~--~V~~~d~~~~~~~--a~--~~g~------~--~~sl~ell~~aDvV~l~~Plt 294 (628)
.++|+|||.|.+|..+|..|...|+ +|..+|+...... +. ..+. . ..+-.+.++.||+|+++++..
T Consensus 7 ~mkI~IiGaG~vG~~~a~~l~~~g~~~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~aD~Vii~v~~~ 86 (319)
T 1lld_A 7 PTKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGSDDPEICRDADMVVITAGPR 86 (319)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTGGGSTTCEEEEESCGGGGTTCSEEEECCCCC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHHHHhhhhhcCCeEEEeCCCHHHhCCCCEEEECCCCC
Confidence 3689999999999999999998898 9999998742111 11 1121 1 111235678999999999633
Q ss_pred cccccc------------cc--HHHHhcCCCCcEEEEcCCCchhcHHHHHH--HHhCCCeeEE
Q 006864 295 PTTSKI------------FN--DETFAKMKKGVRIVNVARGGVIDEEALVR--ALDSGVVAQA 341 (628)
Q Consensus 295 ~~t~~l------------i~--~~~l~~mk~gailIN~aRg~~vde~aL~~--aL~~g~i~ga 341 (628)
. ..+. +. ...+....++++++++.-|--+.+....+ .+...++.|.
T Consensus 87 ~-~~g~~r~~~~~~n~~~~~~~~~~i~~~~~~~~vi~~~Np~~~~~~~~~~~~~~~~~~vig~ 148 (319)
T 1lld_A 87 Q-KPGQSRLELVGATVNILKAIMPNLVKVAPNAIYMLITNPVDIATHVAQKLTGLPENQIFGS 148 (319)
T ss_dssp C-CTTCCHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECCSSHHHHHHHHHHHHTCCTTSEEEC
T ss_pred C-CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEecCchHHHHHHHHHhcCCCHHHEeec
Confidence 2 1211 00 11222346889999987554333322221 2334456553
|
| >3tpf_A Otcase, ornithine carbamoyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, rossman fold; 2.70A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=96.18 E-value=0.089 Score=54.56 Aligned_cols=127 Identities=14% Similarity=0.074 Sum_probs=84.4
Q ss_pred HHhcCceEEcCCCCChhhHHHHHHHHHHHHHHchhHHHHHHHcCcccccccceeeec-CCeEEEEec-ChhHHHHHHHHH
Q 006864 172 ATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSKYVGVSLV-GKTLAVMGF-GKVGSEVARRAK 249 (628)
Q Consensus 172 a~~~GI~V~n~p~~~~~avAE~~l~l~L~~~R~i~~~~~~~~~g~W~~~~~~g~~l~-GktiGIIGl-G~IG~~vA~~l~ 249 (628)
|...+|+|+|+-+....++- +++=++.+.++ .| .+. |++|+++|= +++..+.+..+.
T Consensus 109 A~~~~vPVINag~~~~HPtQ--aLaDl~Ti~e~------------------~g-~l~~gl~va~vGD~~~va~Sl~~~~~ 167 (307)
T 3tpf_A 109 ARYSKAPVINALSELYHPTQ--VLGDLFTIKEW------------------NK-MQNGIAKVAFIGDSNNMCNSWLITAA 167 (307)
T ss_dssp HHHCSSCEEEEECSSCCHHH--HHHHHHHHHHT------------------TC-CGGGCCEEEEESCSSHHHHHHHHHHH
T ss_pred HHhCCCCEEeCCCCCcCcHH--HHHHHHHHHHH------------------hC-CCCCCCEEEEEcCCCccHHHHHHHHH
Confidence 44567899998665443331 22223333321 12 467 999999996 578888888999
Q ss_pred cCCCEEEEECCCC--C-hhH---HH----HcCCc--c-cCHHHHhccCCEEEEcC--CCCcc----------ccccccHH
Q 006864 250 GLGMNVIAHDPYA--P-ADK---AR----AVGVE--L-VSFDQALATADFISLHM--PLNPT----------TSKIFNDE 304 (628)
Q Consensus 250 ~~G~~V~~~d~~~--~-~~~---a~----~~g~~--~-~sl~ell~~aDvV~l~~--Plt~~----------t~~li~~~ 304 (628)
.||++|....|.. + .+. ++ ..|.. . .++++.++.||+|..-. ....+ ....++.+
T Consensus 168 ~~G~~v~~~~P~~~~~~~~~~~~~~~~a~~~g~~~~~~~d~~eav~~aDvvyt~~w~smg~e~~~~~~~~~~~~y~v~~e 247 (307)
T 3tpf_A 168 ILGFEISIAMPKNYKISPEIWEFAMKQALISGAKISLGYDKFEALKDKDVVITDTWVSMGEENEKERKIKEFEGFMIDEK 247 (307)
T ss_dssp HHTCEEEEECCTTCCCCHHHHHHHHHHHHHHTCEEEEESCHHHHHTTCSEEEECCSSCTTGGGGHHHHHHHTGGGCBCHH
T ss_pred HcCCEEEEECCCccCCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhcCCCEEEecCcccCCchhhHHHHHHHhcccccCHH
Confidence 9999999988753 2 221 11 34543 2 38999999999998754 11111 12457888
Q ss_pred HHhcCCCCcEEEEcC
Q 006864 305 TFAKMKKGVRIVNVA 319 (628)
Q Consensus 305 ~l~~mk~gailIN~a 319 (628)
.++++|++++|.-|.
T Consensus 248 ~l~~a~~~ai~mH~l 262 (307)
T 3tpf_A 248 AMSVANKDAILLHCL 262 (307)
T ss_dssp HHHHSCTTCEEEECS
T ss_pred HHHhcCCCcEEECCC
Confidence 999999999999986
|
| >2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A | Back alignment and structure |
|---|
Probab=96.16 E-value=0.016 Score=63.39 Aligned_cols=93 Identities=18% Similarity=0.215 Sum_probs=67.9
Q ss_pred eecCCeEEEEecCh----------hHHHHHHHHHcCCCEEEEECCCCChhHHHH-c-------------CCccc-CHHHH
Q 006864 226 SLVGKTLAVMGFGK----------VGSEVARRAKGLGMNVIAHDPYAPADKARA-V-------------GVELV-SFDQA 280 (628)
Q Consensus 226 ~l~GktiGIIGlG~----------IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~-~-------------g~~~~-sl~el 280 (628)
.+.|++|+|+|+.- -...+++.|...|.+|.+|||+...+.... . ++.+. +..+.
T Consensus 326 ~~~~~~v~vlGlafK~~~dD~R~sp~~~i~~~L~~~g~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (467)
T 2q3e_A 326 TVTDKKIAILGFAFKKDTGDTRESSSIYISKYLMDEGAHLHIYDPKVPREQIVVDLSHPGVSEDDQVSRLVTISKDPYEA 405 (467)
T ss_dssp CCTTCEEEEECCSSSTTCCCCTTCHHHHHHHHHHHTTCEEEEECSSSCHHHHHHHHCC------CHHHHHEEECSSHHHH
T ss_pred ccCCCEEEEEeeccCCCCcchhhChHHHHHHHHHHCCCEEEEEcCccCHHHHhhhhccccccccccccCceeecCCHHHH
Confidence 48999999999874 678899999999999999999975543211 1 23333 67889
Q ss_pred hccCCEEEEcCCCCccccccccHHHH-hcCCCCcEEEEcCCC
Q 006864 281 LATADFISLHMPLNPTTSKIFNDETF-AKMKKGVRIVNVARG 321 (628)
Q Consensus 281 l~~aDvV~l~~Plt~~t~~li~~~~l-~~mk~gailIN~aRg 321 (628)
++.||+|++++.- ++-+. ++-+.+ ..|+...+|+|+ |+
T Consensus 406 ~~~ad~~vi~t~~-~~f~~-~~~~~~~~~~~~~~~i~D~-r~ 444 (467)
T 2q3e_A 406 CDGAHAVVICTEW-DMFKE-LDYERIHKKMLKPAFIFDG-RR 444 (467)
T ss_dssp HTTCSEEEECSCC-GGGGG-SCHHHHHHHSCSSCEEEES-SC
T ss_pred HhCCcEEEEecCC-hhhhc-CCHHHHHHhcCCCCEEEeC-CC
Confidence 9999999999874 33333 354444 567776668886 44
|
| >3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A* | Back alignment and structure |
|---|
Probab=96.15 E-value=0.0077 Score=63.11 Aligned_cols=91 Identities=16% Similarity=0.109 Sum_probs=60.3
Q ss_pred CCeEEEEecChhHHHHHHHHHcCCC--EEEEECCCCChhHH----HHcC-------Ccc-cCHHHHhccCCEEEEcCCCC
Q 006864 229 GKTLAVMGFGKVGSEVARRAKGLGM--NVIAHDPYAPADKA----RAVG-------VEL-VSFDQALATADFISLHMPLN 294 (628)
Q Consensus 229 GktiGIIGlG~IG~~vA~~l~~~G~--~V~~~d~~~~~~~a----~~~g-------~~~-~sl~ell~~aDvV~l~~Plt 294 (628)
.++|+|||.|.||..+|..|...|+ +|..+|........ ...+ +.. .+..+.++.||+|+++.+..
T Consensus 5 ~~kI~ViGaG~vG~~~a~~l~~~~~~~~l~l~D~~~~k~~g~a~DL~~~~~~~~~~v~i~~~~~~a~~~aDvVvi~ag~p 84 (326)
T 3pqe_A 5 VNKVALIGAGFVGSSYAFALINQGITDELVVIDVNKEKAMGDVMDLNHGKAFAPQPVKTSYGTYEDCKDADIVCICAGAN 84 (326)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHTGGGSSSCCEEEEECGGGGTTCSEEEECCSCC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCceEEEEecchHHHHHHHHHHHhccccccCCeEEEeCcHHHhCCCCEEEEecccC
Confidence 5789999999999999999987776 99999986321111 1111 111 12346889999999998642
Q ss_pred cccccc-----c--cH-------HHHhcCCCCcEEEEcCC
Q 006864 295 PTTSKI-----F--ND-------ETFAKMKKGVRIVNVAR 320 (628)
Q Consensus 295 ~~t~~l-----i--~~-------~~l~~mk~gailIN~aR 320 (628)
...++ + |. +.+....|++++++++-
T Consensus 85 -~kpG~~R~dL~~~N~~Iv~~i~~~I~~~~p~a~vlvvtN 123 (326)
T 3pqe_A 85 -QKPGETRLELVEKNLKIFKGIVSEVMASGFDGIFLVATN 123 (326)
T ss_dssp -CCTTCCHHHHHHHHHHHHHHHHHHHHHTTCCSEEEECSS
T ss_pred -CCCCccHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEcCC
Confidence 22222 1 21 22334568899999974
|
| >2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.14 E-value=0.0056 Score=67.26 Aligned_cols=93 Identities=17% Similarity=0.230 Sum_probs=58.3
Q ss_pred cceeeecCCeEEEEecChhHHHHHHHHHcC-CCEEEEECCCCChhH--HHHcCCcc-----c---CHHHHhccCCEEEEc
Q 006864 222 YVGVSLVGKTLAVMGFGKVGSEVARRAKGL-GMNVIAHDPYAPADK--ARAVGVEL-----V---SFDQALATADFISLH 290 (628)
Q Consensus 222 ~~g~~l~GktiGIIGlG~IG~~vA~~l~~~-G~~V~~~d~~~~~~~--a~~~g~~~-----~---sl~ell~~aDvV~l~ 290 (628)
+.+..+.+++++|+|.|.+|+.+++.|... |.+|.++|+...... +...++.. . ++.++++.+|+|+.+
T Consensus 16 ~~~~~l~~k~VlIiGAGgiG~aia~~L~~~~g~~V~v~~R~~~ka~~la~~~~~~~~~~D~~d~~~l~~~l~~~DvVIn~ 95 (467)
T 2axq_A 16 HIEGRHMGKNVLLLGSGFVAQPVIDTLAANDDINVTVACRTLANAQALAKPSGSKAISLDVTDDSALDKVLADNDVVISL 95 (467)
T ss_dssp -------CEEEEEECCSTTHHHHHHHHHTSTTEEEEEEESSHHHHHHHHGGGTCEEEECCTTCHHHHHHHHHTSSEEEEC
T ss_pred ccccCCCCCEEEEECChHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhcCCcEEEEecCCHHHHHHHHcCCCEEEEC
Confidence 456788999999999999999999999987 789999998742211 11123321 1 356778899999999
Q ss_pred CCCCccccccccHHHHhcCCCCcEEEEcC
Q 006864 291 MPLNPTTSKIFNDETFAKMKKGVRIVNVA 319 (628)
Q Consensus 291 ~Plt~~t~~li~~~~l~~mk~gailIN~a 319 (628)
+|.... .-+.. +.+++|..+++++
T Consensus 96 tp~~~~--~~v~~---a~l~~g~~vvd~~ 119 (467)
T 2axq_A 96 IPYTFH--PNVVK---SAIRTKTDVVTSS 119 (467)
T ss_dssp SCGGGH--HHHHH---HHHHHTCEEEECS
T ss_pred Cchhhh--HHHHH---HHHhcCCEEEEee
Confidence 995421 11111 2245566777764
|
| >4a8p_A Putrescine carbamoyltransferase; ornithine agmatine deiminase route; HET: PAO; 2.00A {Enterococcus faecalis} PDB: 4a8h_A* 3txx_A | Back alignment and structure |
|---|
Probab=96.10 E-value=0.071 Score=56.32 Aligned_cols=129 Identities=16% Similarity=0.190 Sum_probs=81.9
Q ss_pred HHhcCceEEcCCCCChhhHHHHHHHHHHHHHHchhHHHHHHHcCcccccccceeeecCCeEEEEec-ChhHHHHHHHHHc
Q 006864 172 ATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGKTLAVMGF-GKVGSEVARRAKG 250 (628)
Q Consensus 172 a~~~GI~V~n~p~~~~~avAE~~l~l~L~~~R~i~~~~~~~~~g~W~~~~~~g~~l~GktiGIIGl-G~IG~~vA~~l~~ 250 (628)
|...+|+|+|+-+....++ .+++=++.+.++++ .|..+.|++|+++|= +++..+.+..+..
T Consensus 114 A~~~~vPVINag~~~~HPt--QaLaDl~TI~E~~~----------------~G~~l~glkva~vGD~~rva~Sl~~~~~~ 175 (355)
T 4a8p_A 114 ANCATIPVINGMSDYNHPT--QELGDLCTMVEHLP----------------EGKKLEDCKVVFVGDATQVCFSLGLITTK 175 (355)
T ss_dssp HHHCSSCEEECCCSSCCHH--HHHHHHHHHHHTCC----------------TTCCGGGCEEEEESCCCHHHHHHHHHHHH
T ss_pred HHhCCCCEEeCCCCCCCcH--HHHHHHHHHHHHhh----------------cCCCCCCCEEEEECCCchhHHHHHHHHHH
Confidence 4456799999866443333 12222333333210 032578999999986 6888999999999
Q ss_pred CCCEEEEECCCC--Ch-hH-------HHHcCCc--c-cCHHHHhccCCEEEEcC--CCCc--cc----------cccccH
Q 006864 251 LGMNVIAHDPYA--PA-DK-------ARAVGVE--L-VSFDQALATADFISLHM--PLNP--TT----------SKIFND 303 (628)
Q Consensus 251 ~G~~V~~~d~~~--~~-~~-------a~~~g~~--~-~sl~ell~~aDvV~l~~--Plt~--~t----------~~li~~ 303 (628)
||++|.+..|.. +. .. +...|.. . .+++ .++.||+|..-+ ...+ +. ...++.
T Consensus 176 ~G~~v~~~~P~~~~p~~~~~~~~~~~a~~~G~~v~~~~d~~-av~~aDVVytd~w~smgq~~~~~~er~~~~~~~y~vt~ 254 (355)
T 4a8p_A 176 MGMNFVHFGPEGFQLNEEHQAKLAKNCEVSGGSFLVTDDAS-SVEGADFLYTDVWYGLYEAELSEEERMKVFYPKYQVNQ 254 (355)
T ss_dssp TTCEEEEECCTTSSCCHHHHHHHHHHHHHHSCEEEEECCGG-GGTTCSEEEECCSSEETTEECCHHHHHHHHTTTTCBCH
T ss_pred cCCEEEEECCCccCCCHHHHHHHHHHHHHcCCeEEEECCHH-HHcCCCEEEecccccCcchhhhhHHHHHHhccccccCH
Confidence 999999988753 22 11 2334543 2 3788 999999998632 1111 00 144677
Q ss_pred HHHhcCCCCcEEEEcC
Q 006864 304 ETFAKMKKGVRIVNVA 319 (628)
Q Consensus 304 ~~l~~mk~gailIN~a 319 (628)
+.++++|++++|.-|.
T Consensus 255 ell~~ak~dai~MHcL 270 (355)
T 4a8p_A 255 EMMDRAGANCKFMHCL 270 (355)
T ss_dssp HHHHHHCTTCEEEECS
T ss_pred HHHHhcCCCcEEECCC
Confidence 7777788888888775
|
| >2w37_A Ornithine carbamoyltransferase, catabolic; transcarbamylase, metal binding-site, hexamer, cytoplasm, arginine metabolism; 2.10A {Lactobacillus hilgardii} | Back alignment and structure |
|---|
Probab=96.10 E-value=0.043 Score=58.03 Aligned_cols=127 Identities=22% Similarity=0.268 Sum_probs=86.4
Q ss_pred HHhcCceEEcCCCCChhhHHHHHHHHHHHHHHchhHHHHHHHcCcccccccceeeecCCeEEEEecC--hhHHHHHHHHH
Q 006864 172 ATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGKTLAVMGFG--KVGSEVARRAK 249 (628)
Q Consensus 172 a~~~GI~V~n~p~~~~~avAE~~l~l~L~~~R~i~~~~~~~~~g~W~~~~~~g~~l~GktiGIIGlG--~IG~~vA~~l~ 249 (628)
|...+|+|+|+-+....++- +++=++.+.++ .| .+.|.+|+++|=| ++..+++..+.
T Consensus 140 A~~s~vPVINa~~~~~HPtQ--aLaDl~Ti~E~------------------~g-~l~gl~va~vGD~~~rva~Sl~~~~~ 198 (359)
T 2w37_A 140 ARDSGVPVWNGLTDEWHPTQ--MLADFMTVKEN------------------FG-KLQGLTLTFMGDGRNNVANSLLVTGA 198 (359)
T ss_dssp HHHSSSCEEEEECSSCCHHH--HHHHHHHHHHH------------------HS-CCTTCEEEEESCTTSHHHHHHHHHHH
T ss_pred HHhCCCCEEcCCCCCCCccH--HHHHHHHHHHH------------------hC-CcCCeEEEEECCCccchHHHHHHHHH
Confidence 44557999997665444432 33333333331 12 4789999999996 99999999999
Q ss_pred cCCCEEEEECCCC---ChhH-------HHHcCCc--c-cCHHHHhccCCEEEEcCCC--Ccc---------ccccccHHH
Q 006864 250 GLGMNVIAHDPYA---PADK-------ARAVGVE--L-VSFDQALATADFISLHMPL--NPT---------TSKIFNDET 305 (628)
Q Consensus 250 ~~G~~V~~~d~~~---~~~~-------a~~~g~~--~-~sl~ell~~aDvV~l~~Pl--t~~---------t~~li~~~~ 305 (628)
.||++|.+..|.. +.+. +++.|.. . .++++.++.||+|..-.=. ..+ ....++.+.
T Consensus 199 ~lG~~v~~~~P~~l~p~~~~~~~~~~~a~~~G~~v~~~~d~~eav~~aDvvytd~w~smg~ee~~er~~~~~~y~v~~el 278 (359)
T 2w37_A 199 ILGVNIHIVAPKALFPTEETQNIAKGFAEKSGAKLVITDDLDEGLKGSNVVYTDVWVSMGESNWEERVKELTPYQVNMEA 278 (359)
T ss_dssp HHTCEEEEECCGGGSCCHHHHHHHHHHHHHHTCCEEEESCHHHHHTTCSEEEECCSCCTTCTTHHHHHHHHGGGCBCHHH
T ss_pred HcCCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEeCHHHHhcCCCEEEEcccccccccchHHHHHHhhccccCHHH
Confidence 9999999988753 2211 1245633 2 3899999999999884321 110 135568888
Q ss_pred HhcCC---CCcEEEEcC
Q 006864 306 FAKMK---KGVRIVNVA 319 (628)
Q Consensus 306 l~~mk---~gailIN~a 319 (628)
++++| ++++|.-|.
T Consensus 279 l~~ak~~~~dai~MHcL 295 (359)
T 2w37_A 279 MKKTGTPDDQLIFMHCL 295 (359)
T ss_dssp HHTTCCCGGGCEEEECS
T ss_pred HHhhCCCCCCEEEECCC
Confidence 88888 899998885
|
| >3m2t_A Probable dehydrogenase; PSI, SGXNY, structural genomics, protein structure initiative; HET: NAD; 2.30A {Chromobacterium violaceum} | Back alignment and structure |
|---|
Probab=96.03 E-value=0.006 Score=64.33 Aligned_cols=63 Identities=16% Similarity=0.240 Sum_probs=46.6
Q ss_pred CeEEEEecChhHHH-HHHHHHcC-CCEEE-EECCCCCh--hHHHHcC-Cc-ccCHHHHhccC--CEEEEcCC
Q 006864 230 KTLAVMGFGKVGSE-VARRAKGL-GMNVI-AHDPYAPA--DKARAVG-VE-LVSFDQALATA--DFISLHMP 292 (628)
Q Consensus 230 ktiGIIGlG~IG~~-vA~~l~~~-G~~V~-~~d~~~~~--~~a~~~g-~~-~~sl~ell~~a--DvV~l~~P 292 (628)
.+|||||+|.||+. .++.++.. +.++. ++|+.... ..+...+ .. +.++++++++. |+|++++|
T Consensus 6 ~rigiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~~~~~~~~~~~~ll~~~~vD~V~i~tp 77 (359)
T 3m2t_A 6 IKVGLVGIGAQMQENLLPSLLQMQDIRIVAACDSDLERARRVHRFISDIPVLDNVPAMLNQVPLDAVVMAGP 77 (359)
T ss_dssp EEEEEECCSHHHHHTHHHHHHTCTTEEEEEEECSSHHHHGGGGGTSCSCCEESSHHHHHHHSCCSEEEECSC
T ss_pred ceEEEECCCHHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHHHhcCCCcccCCHHHHhcCCCCCEEEEcCC
Confidence 48999999999995 88988876 68876 67886422 1222332 33 34899999865 99999998
|
| >3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber} | Back alignment and structure |
|---|
Probab=96.02 E-value=0.011 Score=61.57 Aligned_cols=95 Identities=19% Similarity=0.211 Sum_probs=61.6
Q ss_pred CeEEEEecChhHHHHHHHHHcCCC--EEEEECCCCChhHH--HH-------c--CCcc--cCHHHHhccCCEEEEcCCCC
Q 006864 230 KTLAVMGFGKVGSEVARRAKGLGM--NVIAHDPYAPADKA--RA-------V--GVEL--VSFDQALATADFISLHMPLN 294 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~G~--~V~~~d~~~~~~~a--~~-------~--g~~~--~sl~ell~~aDvV~l~~Plt 294 (628)
++|+|||.|.||+.+|..+...|+ +|..+|........ .+ . .... .+..+.++.||+|+++.+..
T Consensus 1 Mkv~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~~v~~~~~~~a~~~aDvVii~ag~~ 80 (314)
T 3nep_X 1 MKVTVIGAGNVGATVAECVARQDVAKEVVMVDIKDGMPQGKALDMRESSPIHGFDTRVTGTNDYGPTEDSDVCIITAGLP 80 (314)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCSSEEEEECSSTTHHHHHHHHHHHHHHHHTCCCEEEEESSSGGGTTCSEEEECCCC-
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCchHHHHHHHHHHhccccccCCCcEEEECCCHHHhCCCCEEEECCCCC
Confidence 479999999999999999987776 99999987533211 01 1 1222 24678899999999998743
Q ss_pred cccccc-----c--cH-------HHHhcCCCCcEEEEcCCCchhcHH
Q 006864 295 PTTSKI-----F--ND-------ETFAKMKKGVRIVNVARGGVIDEE 327 (628)
Q Consensus 295 ~~t~~l-----i--~~-------~~l~~mk~gailIN~aRg~~vde~ 327 (628)
. ..++ + |. +.+....|.+++++++ ..+|.-
T Consensus 81 ~-kpG~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vivvt--NPvd~~ 124 (314)
T 3nep_X 81 R-SPGMSRDDLLAKNTEIVGGVTEQFVEGSPDSTIIVVA--NPLDVM 124 (314)
T ss_dssp -------CHHHHHHHHHHHHHHHHHHHTTCTTCEEEECC--SSHHHH
T ss_pred C-CCCCCHHHHHHhhHHHHHHHHHHHHHhCCCcEEEecC--CchhHH
Confidence 2 2222 1 11 2334457889999987 344443
|
| >4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=96.02 E-value=0.0073 Score=63.02 Aligned_cols=62 Identities=19% Similarity=0.311 Sum_probs=47.2
Q ss_pred eEEEEecChhHHH-HHHHHHcC-CCEEEE-ECCCCC--hhHHHHcCCc--ccCHHHHhc--cCCEEEEcCC
Q 006864 231 TLAVMGFGKVGSE-VARRAKGL-GMNVIA-HDPYAP--ADKARAVGVE--LVSFDQALA--TADFISLHMP 292 (628)
Q Consensus 231 tiGIIGlG~IG~~-vA~~l~~~-G~~V~~-~d~~~~--~~~a~~~g~~--~~sl~ell~--~aDvV~l~~P 292 (628)
++||||+|.||+. .+..++.. +++|.+ +|+... ...+++.|+. +.+++++++ +.|+|++++|
T Consensus 25 rigiIG~G~ig~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~g~~~~y~d~~ell~~~~iDaV~I~tP 95 (350)
T 4had_A 25 RFGIISTAKIGRDNVVPAIQDAENCVVTAIASRDLTRAREMADRFSVPHAFGSYEEMLASDVIDAVYIPLP 95 (350)
T ss_dssp EEEEESCCHHHHHTHHHHHHHCSSEEEEEEECSSHHHHHHHHHHHTCSEEESSHHHHHHCSSCSEEEECSC
T ss_pred EEEEEcChHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHHcCCCeeeCCHHHHhcCCCCCEEEEeCC
Confidence 8999999999986 56677665 678775 687642 2345667774 358999996 4799999999
|
| >1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=96.00 E-value=0.0063 Score=63.49 Aligned_cols=111 Identities=15% Similarity=0.045 Sum_probs=66.7
Q ss_pred CeEEEEecChhHHHHHHHHHcCCC--EEEEECCCCChhH--HHHc--------CCcc-cCHHHHhccCCEEEEcCCCCcc
Q 006864 230 KTLAVMGFGKVGSEVARRAKGLGM--NVIAHDPYAPADK--ARAV--------GVEL-VSFDQALATADFISLHMPLNPT 296 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~G~--~V~~~d~~~~~~~--a~~~--------g~~~-~sl~ell~~aDvV~l~~Plt~~ 296 (628)
++|+|||.|.+|.+++..+...++ ++..||....... +.++ .+.. .+..+.++.||+|+++.+....
T Consensus 6 ~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~v~~~~~~a~~~aDvVii~ag~~~~ 85 (318)
T 1ez4_A 6 QKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYSGEYSDCKDADLVVITAGAPQK 85 (318)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEEECCGGGGTTCSEEEECCCC---
T ss_pred CEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCCchHHHHHHHHHHHHHHhcCCeEEEECCHHHhCCCCEEEECCCCCCC
Confidence 689999999999999999986665 8999998532111 1111 1111 1456779999999999875432
Q ss_pred cccc-------ccH-------HHHhcCCCCcEEEEcCCCchhcHHHHHHH--HhCCCeeEE
Q 006864 297 TSKI-------FND-------ETFAKMKKGVRIVNVARGGVIDEEALVRA--LDSGVVAQA 341 (628)
Q Consensus 297 t~~l-------i~~-------~~l~~mk~gailIN~aRg~~vde~aL~~a--L~~g~i~ga 341 (628)
.++ .|. +.+....|++++++++-.-=+....+.+. +...++.|.
T Consensus 86 -~g~~R~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tNPv~~~t~~~~k~s~~p~~rviG~ 145 (318)
T 1ez4_A 86 -PGESRLDLVNKNLNILSSIVKPVVDSGFDGIFLVAANPVDILTYATWKFSGFPKERVIGS 145 (318)
T ss_dssp --------CHHHHHHHHHHHHHHHHHTTCCSEEEECSSSHHHHHHHHHHHHCCCGGGEEEC
T ss_pred -CCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeCCcHHHHHHHHHHHcCCCHHHEEec
Confidence 221 111 22333478999999843322333344443 333466665
|
| >3aog_A Glutamate dehydrogenase; NAD(H), oxidoreducta; HET: GLU; 2.10A {Thermus thermophilus HB27} PDB: 3aoe_A | Back alignment and structure |
|---|
Probab=95.97 E-value=0.085 Score=57.31 Aligned_cols=107 Identities=21% Similarity=0.294 Sum_probs=71.7
Q ss_pred eeeecCCeEEEEecChhHHHHHHHHHcCCCEEEE-EC-------CCC-ChhHH----HHcC-------CcccCHHHHhc-
Q 006864 224 GVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIA-HD-------PYA-PADKA----RAVG-------VELVSFDQALA- 282 (628)
Q Consensus 224 g~~l~GktiGIIGlG~IG~~vA~~l~~~G~~V~~-~d-------~~~-~~~~a----~~~g-------~~~~sl~ell~- 282 (628)
|.++.|+++.|.|+|++|+.+|+.|...|++|++ .| |.- +.+.. .+.| .+.++.++++.
T Consensus 230 g~~l~g~~vaVqGfGnVG~~~a~~L~e~GakvVavsD~~G~i~dp~Gld~~~l~~~~~~~g~i~~y~~a~~i~~~ei~~~ 309 (440)
T 3aog_A 230 GLQVEGARVAIQGFGNVGNAAARAFHDHGARVVAVQDHTGTVYNEAGIDPYDLLRHVQEFGGVRGYPKAEPLPAADFWGL 309 (440)
T ss_dssp TCCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEECSSCEEECTTCCCHHHHHHHHHHTSSSTTCTTSEECCHHHHTTC
T ss_pred CCCccCCEEEEeccCHHHHHHHHHHHHCCCEEEEEEcCCcEEECCCCCCHHHHHHHHHhcCCcccCCCceEcCchhhhcC
Confidence 4579999999999999999999999999999984 34 321 22211 1112 23446677765
Q ss_pred cCCEEEEcCCCCccccccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhCCCe
Q 006864 283 TADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVV 338 (628)
Q Consensus 283 ~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~~vde~aL~~aL~~g~i 338 (628)
.||+++-|.. .+.++.+....++ ..+|+-.|-+.+- .++- +.|.+..|
T Consensus 310 ~~DIlvPcA~-----~n~i~~~na~~l~-ak~VvEgAN~p~t-~eA~-~iL~~~GI 357 (440)
T 3aog_A 310 PVEFLVPAAL-----EKQITEQNAWRIR-ARIVAEGANGPTT-PAAD-DILLEKGV 357 (440)
T ss_dssp CCSEEEECSS-----SSCBCTTTGGGCC-CSEEECCSSSCBC-HHHH-HHHHHHTC
T ss_pred CCcEEEecCC-----cCccchhhHHHcC-CcEEEecCccccC-HHHH-HHHHHCCC
Confidence 7999998875 4556666666663 5577777877764 4443 44444333
|
| >3csu_A Protein (aspartate carbamoyltransferase); transferase (carbamoyl-P; 1.88A {Escherichia coli} SCOP: c.78.1.1 c.78.1.1 PDB: 1r0b_A* 1q95_A* 1raa_A* 1rab_A* 1rac_A* 1rad_A* 1rae_A* 1raf_A* 1rag_A* 1rah_A* 1rai_A* 1r0c_A* 1za2_A* 1za1_A* 2fzc_A* 2fzg_A* 2fzk_A* 2h3e_A* 2ipo_A* 2qg9_A ... | Back alignment and structure |
|---|
Probab=95.94 E-value=0.032 Score=58.00 Aligned_cols=94 Identities=14% Similarity=0.221 Sum_probs=68.4
Q ss_pred eecCCeEEEEec---ChhHHHHHHHHHcC-CCEEEEECCCC--C-h---hHHHHcCCcc---cCHHHHhccCCEEEEcCC
Q 006864 226 SLVGKTLAVMGF---GKVGSEVARRAKGL-GMNVIAHDPYA--P-A---DKARAVGVEL---VSFDQALATADFISLHMP 292 (628)
Q Consensus 226 ~l~GktiGIIGl---G~IG~~vA~~l~~~-G~~V~~~d~~~--~-~---~~a~~~g~~~---~sl~ell~~aDvV~l~~P 292 (628)
.+.|++|+++|= |++..+++..+..| |++|.+..|.. + . +.+++.|... .+++++++.||+|..-.=
T Consensus 151 ~l~gl~va~vGD~~~~rva~Sl~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~d~~eav~~aDvvyt~~~ 230 (310)
T 3csu_A 151 RLDNLHVAMVGDLKYGRTVHSLTQALAKFDGNRFYFIAPDALAMPQYILDMLDEKGIAWSLHSSIEEVMAEVDILYMTRV 230 (310)
T ss_dssp CSSSCEEEEESCTTTCHHHHHHHHHHHTSSSCEEEEECCGGGCCCHHHHHHHHHTTCCEEECSCGGGTTTTCSEEEECC-
T ss_pred CcCCcEEEEECCCCCCchHHHHHHHHHhCCCCEEEEECCcccccCHHHHHHHHHcCCeEEEEcCHHHHhcCCCEEEECCc
Confidence 478999999998 59999999999999 99999988753 2 2 1233446542 379999999999987542
Q ss_pred CCc----cc------cccccHHHHhcCCCCcEEEEcC
Q 006864 293 LNP----TT------SKIFNDETFAKMKKGVRIVNVA 319 (628)
Q Consensus 293 lt~----~t------~~li~~~~l~~mk~gailIN~a 319 (628)
-.+ +. ...++.+.++++|++++|.-|.
T Consensus 231 q~er~~~~~~~~~~~~y~v~~~ll~~a~~~ai~mH~l 267 (310)
T 3csu_A 231 QKERLDPSEYANVKAQFVLRASDLHNAKANMKVLHPL 267 (310)
T ss_dssp ----------------CCBCGGGGTTCCTTCEEECCS
T ss_pred cccccCHHHHHHHhhccCCCHHHHhhcCCCCEEECCC
Confidence 111 10 2456788888888888888885
|
| >1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=95.94 E-value=0.024 Score=57.78 Aligned_cols=66 Identities=17% Similarity=0.154 Sum_probs=49.2
Q ss_pred cCCeEEEEecChhHHHHHHHHHcCCC-EEEEECCCCCh--hHHHHcCCccc-CHHHHhccCCEEEEcCCCCc
Q 006864 228 VGKTLAVMGFGKVGSEVARRAKGLGM-NVIAHDPYAPA--DKARAVGVELV-SFDQALATADFISLHMPLNP 295 (628)
Q Consensus 228 ~GktiGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~~~--~~a~~~g~~~~-sl~ell~~aDvV~l~~Plt~ 295 (628)
.++++.|||.|.+|+.++..|...|. +|.+++|.... ..+...+.... ++. +.++|+|+.++|..-
T Consensus 118 ~~~~vlvlGaGgaarav~~~L~~~G~~~i~v~nRt~~ka~~la~~~~~~~~~~~~--~~~~DivInaTp~gm 187 (271)
T 1npy_A 118 KNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNVKTGQYLAALYGYAYINSLE--NQQADILVNVTSIGM 187 (271)
T ss_dssp TTSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCHHHHHHHHHHHTCEEESCCT--TCCCSEEEECSSTTC
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCccchhhh--cccCCEEEECCCCCc
Confidence 47899999999999999999999997 79999987422 22333343322 222 468999999999653
|
| >2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A* | Back alignment and structure |
|---|
Probab=95.93 E-value=0.0077 Score=63.04 Aligned_cols=112 Identities=15% Similarity=0.057 Sum_probs=66.7
Q ss_pred CCeEEEEecChhHHHHHHHHHcCCC--EEEEECCCCChhH--HHHc--C------Ccc-cCHHHHhccCCEEEEcCCCCc
Q 006864 229 GKTLAVMGFGKVGSEVARRAKGLGM--NVIAHDPYAPADK--ARAV--G------VEL-VSFDQALATADFISLHMPLNP 295 (628)
Q Consensus 229 GktiGIIGlG~IG~~vA~~l~~~G~--~V~~~d~~~~~~~--a~~~--g------~~~-~sl~ell~~aDvV~l~~Plt~ 295 (628)
.++|+|||.|.+|..++..+...++ ++..||....... +.++ . +.. .+..+.++.||+|+++.+...
T Consensus 9 ~~KI~IiGaG~vG~~la~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~i~~~~~~a~~~aDvVii~ag~~~ 88 (326)
T 2zqz_A 9 HQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLSNALPFTSPKKIYSAEYSDAKDADLVVITAGAPQ 88 (326)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCEEEECCGGGGGGCSEEEECCCCC-
T ss_pred CCEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCCchHhHHHHHHHHHHHHhcCCeEEEECCHHHhCCCCEEEEcCCCCC
Confidence 3699999999999999999986665 8999998532111 1111 1 111 145677999999999987543
Q ss_pred ccccc-------ccH-------HHHhcCCCCcEEEEcCCCchhcHHHHHHH--HhCCCeeEE
Q 006864 296 TTSKI-------FND-------ETFAKMKKGVRIVNVARGGVIDEEALVRA--LDSGVVAQA 341 (628)
Q Consensus 296 ~t~~l-------i~~-------~~l~~mk~gailIN~aRg~~vde~aL~~a--L~~g~i~ga 341 (628)
..++ .|. +.+....|++++++++-.-=+....+.+. +...++.|.
T Consensus 89 -k~g~~R~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tNPv~~~t~~~~k~s~~p~~rviG~ 149 (326)
T 2zqz_A 89 -KPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLVAANPVDILTYATWKLSGFPKNRVVGS 149 (326)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHTCCSEEEECSSSHHHHHHHHHHHHCCCGGGEEEC
T ss_pred -CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHHHcCCCHHHEEEc
Confidence 2222 111 12233468999999843322333343343 333466665
|
| >3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A* | Back alignment and structure |
|---|
Probab=95.92 E-value=0.019 Score=62.40 Aligned_cols=84 Identities=20% Similarity=0.272 Sum_probs=64.2
Q ss_pred eecCCeEEEEecC----------hhHHHHHHHHHcC-CCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEcCCCC
Q 006864 226 SLVGKTLAVMGFG----------KVGSEVARRAKGL-GMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLN 294 (628)
Q Consensus 226 ~l~GktiGIIGlG----------~IG~~vA~~l~~~-G~~V~~~d~~~~~~~a~~~g~~~~sl~ell~~aDvV~l~~Plt 294 (628)
.+.|++|+|+|+- .-...+++.|... |.+|.+|||+.... ....++++.++.||.|+++++-
T Consensus 312 ~~~~~~v~vlGlafK~~tdD~ReSpa~~i~~~L~~~~g~~V~~~DP~~~~~------~~~~~~~~~~~~ad~vvi~t~~- 384 (431)
T 3ojo_A 312 ALSGNKVTVFGLTYKGDVDDIRESPAFDIYELLNQEPDIEVCAYDPHVELD------FVEHDMSHAVKDASLVLILSDH- 384 (431)
T ss_dssp HSSCCEEEEECCCSSTTSCCCTTCHHHHHHHHHHHSTTCEEEEECSSCCCT------TBCSTTHHHHTTCSEEEECSCC-
T ss_pred hcCCCEEEEEeeeeCCCCcchhcChHHHHHHHHHhhcCCEEEEECCCcccc------cccCCHHHHHhCCCEEEEecCC-
Confidence 4789999999984 2368899999999 99999999997542 2334789999999999999873
Q ss_pred ccccccccHHHHhcCCCCcEEEEc
Q 006864 295 PTTSKIFNDETFAKMKKGVRIVNV 318 (628)
Q Consensus 295 ~~t~~li~~~~l~~mk~gailIN~ 318 (628)
++-+. ++-+.+..|+ +.+|+|+
T Consensus 385 ~~f~~-~d~~~~~~~~-~~~i~D~ 406 (431)
T 3ojo_A 385 SEFKN-LSDSHFDKMK-HKVIFDT 406 (431)
T ss_dssp GGGTS-CCGGGGTTCS-SCEEEES
T ss_pred HHHhc-cCHHHHHhCC-CCEEEEC
Confidence 33333 3445556676 6789996
|
| >3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=95.91 E-value=0.016 Score=60.46 Aligned_cols=93 Identities=19% Similarity=0.211 Sum_probs=60.6
Q ss_pred cCCeEEEEecChhHHHHHHHHHcCCC-EEEEECCCC--ChhHHH--H---------cC--CcccCHHHHhccCCEEEEcC
Q 006864 228 VGKTLAVMGFGKVGSEVARRAKGLGM-NVIAHDPYA--PADKAR--A---------VG--VELVSFDQALATADFISLHM 291 (628)
Q Consensus 228 ~GktiGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~--~~~~a~--~---------~g--~~~~sl~ell~~aDvV~l~~ 291 (628)
..++|+|||.|.+|..+|..+...|+ +|..||... ...... + .. +...+-.+.+++||+|+++.
T Consensus 7 ~~~kv~ViGaG~vG~~ia~~l~~~g~~~v~l~D~~~~~~~~~g~a~dl~~~~~~~~~~~~i~~t~d~~a~~~aDvVIiaa 86 (315)
T 3tl2_A 7 KRKKVSVIGAGFTGATTAFLLAQKELADVVLVDIPQLENPTKGKALDMLEASPVQGFDANIIGTSDYADTADSDVVVITA 86 (315)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCGGGHHHHHHHHHHHHHHHHHHTCCCCEEEESCGGGGTTCSEEEECC
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeccchHHHHHHhhhhHHHhhhhccCCCEEEEcCCHHHhCCCCEEEEeC
Confidence 46799999999999999999998898 999999872 111110 0 01 11122256789999999997
Q ss_pred CCC--c-ccc-ccc--cH-------HHHhcCCCCcEEEEcCC
Q 006864 292 PLN--P-TTS-KIF--ND-------ETFAKMKKGVRIVNVAR 320 (628)
Q Consensus 292 Plt--~-~t~-~li--~~-------~~l~~mk~gailIN~aR 320 (628)
... + +++ .++ |. +.+....|++++++++-
T Consensus 87 g~p~kpg~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vlvvsN 128 (315)
T 3tl2_A 87 GIARKPGMSRDDLVATNSKIMKSITRDIAKHSPNAIIVVLTN 128 (315)
T ss_dssp SCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCS
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEECCC
Confidence 532 2 111 112 11 22334468899999974
|
| >2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A | Back alignment and structure |
|---|
Probab=95.91 E-value=0.0074 Score=62.57 Aligned_cols=111 Identities=12% Similarity=0.134 Sum_probs=66.3
Q ss_pred CeEEEEecChhHHHHHHHHHcCCC--EEEEECCCCC-hhHHHH---c---CCcc-cCHHHHhccCCEEEEcCCCCc--cc
Q 006864 230 KTLAVMGFGKVGSEVARRAKGLGM--NVIAHDPYAP-ADKARA---V---GVEL-VSFDQALATADFISLHMPLNP--TT 297 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~G~--~V~~~d~~~~-~~~a~~---~---g~~~-~sl~ell~~aDvV~l~~Plt~--~t 297 (628)
++|+|||.|.+|..+|..+...|+ +|..+|.... ...+.+ . .+.. .++ +.++.||+|+++..... +|
T Consensus 15 ~kV~ViGaG~vG~~~a~~l~~~g~~~ev~L~Di~~~~~g~a~dl~~~~~~~i~~t~d~-~~l~~aD~Vi~aag~~~pG~t 93 (303)
T 2i6t_A 15 NKITVVGGGELGIACTLAISAKGIADRLVLLDLSEGTKGATMDLEIFNLPNVEISKDL-SASAHSKVVIFTVNSLGSSQS 93 (303)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECCC-----CHHHHHHHTCTTEEEESCG-GGGTTCSEEEECCCC----CC
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCcchHHHHHHHhhhcCCCeEEeCCH-HHHCCCCEEEEcCCCCCCCCC
Confidence 799999999999999999987777 9999998642 111111 1 1222 366 67899999999974311 11
Q ss_pred c--------cccc--HHHHhcCCCCcEEEEcCCCchhcHHHHHHH--HhCCCeeEE
Q 006864 298 S--------KIFN--DETFAKMKKGVRIVNVARGGVIDEEALVRA--LDSGVVAQA 341 (628)
Q Consensus 298 ~--------~li~--~~~l~~mk~gailIN~aRg~~vde~aL~~a--L~~g~i~ga 341 (628)
+ .++. ...+....|.+++++++-.-=+....+.+. +...++.|.
T Consensus 94 R~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~sNP~~~~t~~~~~~~~~p~~rviG~ 149 (303)
T 2i6t_A 94 YLDVVQSNVDMFRALVPALGHYSQHSVLLVASQPVEIMTYVTWKLSTFPANRVIGI 149 (303)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTCEEEECSSSHHHHHHHHHHHHCCCGGGEEEC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcCChHHHHHHHHHHhcCCCHHHeeCC
Confidence 1 0110 112233348999999876333334444333 224477776
|
| >1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A | Back alignment and structure |
|---|
Probab=95.89 E-value=0.011 Score=64.60 Aligned_cols=67 Identities=18% Similarity=0.234 Sum_probs=48.9
Q ss_pred cCCeEEEEecChhHHHHHHHHHcCCCEEEEECCCCChhH--HHHcC-Cc-----cc---CHHHHhccCCEEEEcCCCC
Q 006864 228 VGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADK--ARAVG-VE-----LV---SFDQALATADFISLHMPLN 294 (628)
Q Consensus 228 ~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~--a~~~g-~~-----~~---sl~ell~~aDvV~l~~Plt 294 (628)
.+|+++|+|.|.||+.+++.|...|.+|.++|+...... +...+ +. .. +++++++++|+|+.++|..
T Consensus 2 ~~k~VlViGaG~iG~~ia~~L~~~G~~V~v~~R~~~~a~~la~~~~~~~~~~~Dv~d~~~l~~~l~~~DvVIn~a~~~ 79 (450)
T 1ff9_A 2 ATKSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLESAKKLSAGVQHSTPISLDVNDDAALDAEVAKHDLVISLIPYT 79 (450)
T ss_dssp CCCEEEEECCSTTHHHHHHHHHTTTCEEEEEESSHHHHHHTTTTCTTEEEEECCTTCHHHHHHHHTTSSEEEECCC--
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCcCEEEEEECCHHHHHHHHHhcCCceEEEeecCCHHHHHHHHcCCcEEEECCccc
Confidence 478999999999999999999999999999998642111 11111 11 11 3557888999999999964
|
| >3gd5_A Otcase, ornithine carbamoyltransferase; structural genomics, NYSGXRC, target 9454P, operon, amino-acid biosynthesis, ARGI biosynthesis; 2.10A {Gloeobacter violaceus} | Back alignment and structure |
|---|
Probab=95.88 E-value=0.1 Score=54.43 Aligned_cols=127 Identities=19% Similarity=0.189 Sum_probs=83.2
Q ss_pred HHhcCceEEcCCCCChhhHHHHHHHHHHHHHHchhHHHHHHHcCcccccccceeeecCCeEEEEec-ChhHHHHHHHHHc
Q 006864 172 ATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGKTLAVMGF-GKVGSEVARRAKG 250 (628)
Q Consensus 172 a~~~GI~V~n~p~~~~~avAE~~l~l~L~~~R~i~~~~~~~~~g~W~~~~~~g~~l~GktiGIIGl-G~IG~~vA~~l~~ 250 (628)
|...+|+|+|+-+....++- +++=++.+.++ .| .+.|++|+++|= +++..+.+..+..
T Consensus 121 A~~~~vPVINag~~~~HPtQ--aLaDl~Ti~e~------------------~g-~l~glkva~vGD~~rva~Sl~~~~~~ 179 (323)
T 3gd5_A 121 AHYAGIPVINALTDHEHPCQ--VVADLLTIREN------------------FG-RLAGLKLAYVGDGNNVAHSLLLGCAK 179 (323)
T ss_dssp HHHHCSCEEEEECSSCCHHH--HHHHHHHHHHH------------------HS-CCTTCEEEEESCCCHHHHHHHHHHHH
T ss_pred HHhCCCCEEeCCCCCCCcHH--HHHHHHHHHHH------------------hC-CCCCCEEEEECCCCcHHHHHHHHHHH
Confidence 34457899998664433331 22223333321 12 378999999986 6888899999999
Q ss_pred CCCEEEEECCCC--Ch-hH-------HHHcCC--cc-cCHHHHhccCCEEEEcCCCC--cc----------ccccccHHH
Q 006864 251 LGMNVIAHDPYA--PA-DK-------ARAVGV--EL-VSFDQALATADFISLHMPLN--PT----------TSKIFNDET 305 (628)
Q Consensus 251 ~G~~V~~~d~~~--~~-~~-------a~~~g~--~~-~sl~ell~~aDvV~l~~Plt--~~----------t~~li~~~~ 305 (628)
+|++|.+..|.. +. +. ++..|. +. .++++.++.||+|..-.=.. .+ ....++.+.
T Consensus 180 ~G~~v~~~~P~~~~~~~~~~~~~~~~a~~~g~~v~~~~d~~eav~~aDvvyt~~wqs~g~~~~~~~~~~~~~~y~vt~el 259 (323)
T 3gd5_A 180 VGMSIAVATPEGFTPDPAVSARASEIAGRTGAEVQILRDPFEAARGAHILYTDVWTSMGQEAETQHRLQLFEQYQINAAL 259 (323)
T ss_dssp HTCEEEEECCTTCCCCHHHHHHHHHHHHHHTCCEEEESCHHHHHTTCSEEEECCCC---------CCHHHHTTCCBCHHH
T ss_pred cCCEEEEECCCcccCCHHHHHHHHHHHHHcCCeEEEECCHHHHhcCCCEEEEeceecCCCcccchHHHHHhhccCCCHHH
Confidence 999999988753 22 11 123453 22 38999999999998753111 00 124578889
Q ss_pred HhcCCCCcEEEEcC
Q 006864 306 FAKMKKGVRIVNVA 319 (628)
Q Consensus 306 l~~mk~gailIN~a 319 (628)
++.+|++++|.-|.
T Consensus 260 l~~ak~dai~mHcl 273 (323)
T 3gd5_A 260 LNCAAAEAIVLHCL 273 (323)
T ss_dssp HHTSCTTCEEEECS
T ss_pred HhhcCCCcEEECCC
Confidence 99999999999885
|
| >3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A* | Back alignment and structure |
|---|
Probab=95.87 E-value=0.017 Score=60.36 Aligned_cols=92 Identities=15% Similarity=0.234 Sum_probs=60.5
Q ss_pred ecCCeEEEEecChhHHHHHHHHHcCCC-EEEEECCCCChhH------HHH-----cCCc--c-cCHHHHhccCCEEEEcC
Q 006864 227 LVGKTLAVMGFGKVGSEVARRAKGLGM-NVIAHDPYAPADK------ARA-----VGVE--L-VSFDQALATADFISLHM 291 (628)
Q Consensus 227 l~GktiGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~~~~~------a~~-----~g~~--~-~sl~ell~~aDvV~l~~ 291 (628)
+..++|+|||.|.+|..+|..|...|+ +|..||....... ... .... . .+. +.++.||+|+++.
T Consensus 5 m~~~kI~viGaG~vG~~~a~~l~~~~~~~v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~t~d~-~a~~~aDiVIiaa 83 (324)
T 3gvi_A 5 MARNKIALIGSGMIGGTLAHLAGLKELGDVVLFDIAEGTPQGKGLDIAESSPVDGFDAKFTGANDY-AAIEGADVVIVTA 83 (324)
T ss_dssp -CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEEESSG-GGGTTCSEEEECC
T ss_pred CcCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCchhHHHHHHHHhchhhhcCCCCEEEEeCCH-HHHCCCCEEEEcc
Confidence 456799999999999999999988887 9999998754211 110 1222 1 244 7899999999997
Q ss_pred CCCcccccc-----c--cH-------HHHhcCCCCcEEEEcCC
Q 006864 292 PLNPTTSKI-----F--ND-------ETFAKMKKGVRIVNVAR 320 (628)
Q Consensus 292 Plt~~t~~l-----i--~~-------~~l~~mk~gailIN~aR 320 (628)
+.. ...++ + |. ..+....|++++++++-
T Consensus 84 g~p-~k~G~~R~dl~~~N~~i~~~i~~~i~~~~p~a~iivvtN 125 (324)
T 3gvi_A 84 GVP-RKPGMSRDDLLGINLKVMEQVGAGIKKYAPEAFVICITN 125 (324)
T ss_dssp SCC-CC-----CHHHHHHHHHHHHHHHHHHHHCTTCEEEECCS
T ss_pred CcC-CCCCCCHHHHHHhhHHHHHHHHHHHHHHCCCeEEEecCC
Confidence 632 22222 1 21 12333458899999874
|
| >3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A* | Back alignment and structure |
|---|
Probab=95.86 E-value=0.0085 Score=62.38 Aligned_cols=113 Identities=15% Similarity=0.039 Sum_probs=69.1
Q ss_pred cCCeEEEEecChhHHHHHHHHHcCCC--EEEEECCCCChh--HHHHc---------CCcc-cCHHHHhccCCEEEEcCCC
Q 006864 228 VGKTLAVMGFGKVGSEVARRAKGLGM--NVIAHDPYAPAD--KARAV---------GVEL-VSFDQALATADFISLHMPL 293 (628)
Q Consensus 228 ~GktiGIIGlG~IG~~vA~~l~~~G~--~V~~~d~~~~~~--~a~~~---------g~~~-~sl~ell~~aDvV~l~~Pl 293 (628)
..++|+|||.|.+|..+|..+...|. +|..||...... .+.++ .+.. .+..+.++.||+|+++.+.
T Consensus 5 ~~~KI~IIGaG~vG~~la~~l~~~~~~~ei~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~~~~~a~~~aDvVvi~ag~ 84 (317)
T 3d0o_A 5 KGNKVVLIGNGAVGSSYAFSLVNQSIVDELVIIDLDTEKVRGDVMDLKHATPYSPTTVRVKAGEYSDCHDADLVVICAGA 84 (317)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHHCSCSEEEEECSCHHHHHHHHHHHHHHGGGSSSCCEEEECCGGGGTTCSEEEECCCC
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHhhhhhhhHHhhhhhcCCCeEEEeCCHHHhCCCCEEEECCCC
Confidence 34699999999999999999986664 899999753111 11110 1111 1446779999999999975
Q ss_pred Ccccccc-------ccH-------HHHhcCCCCcEEEEcCCCchhcHHHHHHH--HhCCCeeEE
Q 006864 294 NPTTSKI-------FND-------ETFAKMKKGVRIVNVARGGVIDEEALVRA--LDSGVVAQA 341 (628)
Q Consensus 294 t~~t~~l-------i~~-------~~l~~mk~gailIN~aRg~~vde~aL~~a--L~~g~i~ga 341 (628)
... .++ .|. +.+....|++++++++-.-=+....+.+. +...++.|.
T Consensus 85 ~~~-~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~tNPv~~~t~~~~k~~~~p~~rviG~ 147 (317)
T 3d0o_A 85 AQK-PGETRLDLVSKNLKIFKSIVGEVMASKFDGIFLVATNPVDILAYATWKFSGLPKERVIGS 147 (317)
T ss_dssp CCC-TTCCHHHHHHHHHHHHHHHHHHHHHTTCCSEEEECSSSHHHHHHHHHHHHCCCGGGEEEC
T ss_pred CCC-CCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCcHHHHHHHHHHHhCCCHHHEEec
Confidence 432 221 111 22334478999999763332334444444 333466665
|
| >3i23_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Enterococcus faecalis} PDB: 3fd8_A* 3hnp_A | Back alignment and structure |
|---|
Probab=95.86 E-value=0.01 Score=62.13 Aligned_cols=63 Identities=19% Similarity=0.293 Sum_probs=46.9
Q ss_pred CeEEEEecChhHH-HHHHHHHcC-CCEEE-EECCCCChhHHHH---cCCcc-cCHHHHhcc--CCEEEEcCC
Q 006864 230 KTLAVMGFGKVGS-EVARRAKGL-GMNVI-AHDPYAPADKARA---VGVEL-VSFDQALAT--ADFISLHMP 292 (628)
Q Consensus 230 ktiGIIGlG~IG~-~vA~~l~~~-G~~V~-~~d~~~~~~~a~~---~g~~~-~sl~ell~~--aDvV~l~~P 292 (628)
.++||||+|.||+ ..+..++.. +++|. ++|+......+.. .++.. .++++++++ .|+|++++|
T Consensus 3 ~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~a~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp 74 (349)
T 3i23_A 3 VKMGFIGFGKSANRYHLPYVMIRETLEVKTIFDLHVNEKAAAPFKEKGVNFTADLNELLTDPEIELITICTP 74 (349)
T ss_dssp EEEEEECCSHHHHHTTHHHHTTCTTEEEEEEECTTCCHHHHHHHHTTTCEEESCTHHHHSCTTCCEEEECSC
T ss_pred eEEEEEccCHHHHHHHHHHHhhCCCeEEEEEECCCHHHHHHHhhCCCCCeEECCHHHHhcCCCCCEEEEeCC
Confidence 3799999999999 577777665 68876 5787743344444 34543 489999986 899999998
|
| >3kux_A Putative oxidoreductase; oxidoreductase family, csgid, structural genomics, center FO structural genomics of infectious diseases; HET: MSE; 2.75A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=95.85 E-value=0.0075 Score=63.26 Aligned_cols=65 Identities=15% Similarity=0.237 Sum_probs=46.4
Q ss_pred CeEEEEecChhHHH-HHHHHHcC-CCEEE-EECCCCChhHHHHcCCc-ccCHHHHhcc--CCEEEEcCCCC
Q 006864 230 KTLAVMGFGKVGSE-VARRAKGL-GMNVI-AHDPYAPADKARAVGVE-LVSFDQALAT--ADFISLHMPLN 294 (628)
Q Consensus 230 ktiGIIGlG~IG~~-vA~~l~~~-G~~V~-~~d~~~~~~~a~~~g~~-~~sl~ell~~--aDvV~l~~Plt 294 (628)
.++||||+|.||+. .+..++.. +++|. ++|+..........++. +.++++++++ .|+|++++|-.
T Consensus 8 ~rvgiiG~G~~g~~~~~~~~~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~ 78 (352)
T 3kux_A 8 IKVGLLGYGYASKTFHAPLIMGTPGLELAGVSSSDASKVHADWPAIPVVSDPQMLFNDPSIDLIVIPTPND 78 (352)
T ss_dssp EEEEEECCSHHHHHTHHHHHHTSTTEEEEEEECSCHHHHHTTCSSCCEESCHHHHHHCSSCCEEEECSCTT
T ss_pred ceEEEECCCHHHHHHHHHHHhhCCCcEEEEEECCCHHHHHhhCCCCceECCHHHHhcCCCCCEEEEeCChH
Confidence 47999999999997 78888766 68876 56876422111111333 3489999976 99999999843
|
| >1b7g_O Protein (glyceraldehyde 3-phosphate dehydrogenase; archaea, hyperthermophIle, GAPDH, hyperthermophilic dehydrog oxidoreductase; 2.05A {Sulfolobus solfataricus} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=95.84 E-value=0.015 Score=61.29 Aligned_cols=84 Identities=15% Similarity=0.225 Sum_probs=51.7
Q ss_pred eEEEEecChhHHHHHHHHHcC-CCEEEE-ECCCCCh--hHHHHcCCccc------------------CHHHHhccCCEEE
Q 006864 231 TLAVMGFGKVGSEVARRAKGL-GMNVIA-HDPYAPA--DKARAVGVELV------------------SFDQALATADFIS 288 (628)
Q Consensus 231 tiGIIGlG~IG~~vA~~l~~~-G~~V~~-~d~~~~~--~~a~~~g~~~~------------------sl~ell~~aDvV~ 288 (628)
++||+|+|+||+.+++.+... ++++.+ .|+.... ..+...|+... ++++++.++|+|+
T Consensus 3 kVgIiGaG~iG~~~~r~L~~~p~~elvav~d~~~~~~~~~a~~~g~~~~~~~~~~~~~~~~~v~v~~~~e~l~~~vDvV~ 82 (340)
T 1b7g_O 3 NVAVNGYGTIGKRVADAIIKQPDMKLVGVAKTSPNYEAFIAHRRGIRIYVPQQSIKKFEESGIPVAGTVEDLIKTSDIVV 82 (340)
T ss_dssp EEEEECCSHHHHHHHHHHHTCTTEEEEEEECSSCSHHHHHHHHTTCCEECCGGGHHHHHTTTCCCCCCHHHHHHHCSEEE
T ss_pred EEEEEecCHHHHHHHHHHHcCCCCEEEEEEcCChHHHHHHHHhcCcceecCcCHHHHhcccccccccCHhHhhcCCCEEE
Confidence 799999999999999999865 578765 4654321 12222233211 3446667899999
Q ss_pred EcCCCCccccccccHHHHhcCCCCcEEEEcC
Q 006864 289 LHMPLNPTTSKIFNDETFAKMKKGVRIVNVA 319 (628)
Q Consensus 289 l~~Plt~~t~~li~~~~l~~mk~gailIN~a 319 (628)
.|+|.... .. .... .++.|+.+|+.+
T Consensus 83 ~aTp~~~s-~~--~a~~--~~~aG~kvV~~s 108 (340)
T 1b7g_O 83 DTTPNGVG-AQ--YKPI--YLQLQRNAIFQG 108 (340)
T ss_dssp ECCSTTHH-HH--HHHH--HHHTTCEEEECT
T ss_pred ECCCCchh-HH--HHHH--HHHcCCeEEEeC
Confidence 99984421 11 1111 235577677654
|
| >3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A | Back alignment and structure |
|---|
Probab=95.82 E-value=0.0099 Score=63.08 Aligned_cols=64 Identities=22% Similarity=0.350 Sum_probs=46.6
Q ss_pred eecCCeEEEEecChhHHHHHHHHHcCCCEEEEECCCCChhHHHHcC-C---ccc---CHHHHhccCCEEEE
Q 006864 226 SLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVG-V---ELV---SFDQALATADFISL 289 (628)
Q Consensus 226 ~l~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g-~---~~~---sl~ell~~aDvV~l 289 (628)
.+.||+|||+|.|.+|+.+++.++.+|++|+++|++.......-.. . ... .+.++++++|+|+.
T Consensus 9 ~~~~~~IlIlG~G~lg~~la~aa~~lG~~viv~d~~~~~p~~~~ad~~~~~~~~d~~~l~~~~~~~dvi~~ 79 (377)
T 3orq_A 9 LKFGATIGIIGGGQLGKMMAQSAQKMGYKVVVLDPSEDCPCRYVAHEFIQAKYDDEKALNQLGQKCDVITY 79 (377)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCTTCTTGGGSSEEEECCTTCHHHHHHHHHHCSEEEE
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCChhhhhCCEEEECCCCCHHHHHHHHHhCCccee
Confidence 4679999999999999999999999999999999875321111000 0 111 26677888998854
|
| >4fb5_A Probable oxidoreductase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, GFO/IDH/MOCA family; 2.61A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=95.81 E-value=0.011 Score=62.06 Aligned_cols=63 Identities=19% Similarity=0.306 Sum_probs=46.3
Q ss_pred CeEEEEecChhHHHHHHHHHcC--------CCEEEE-ECCCCC--hhHHHHcCCc--ccCHHHHhc--cCCEEEEcCC
Q 006864 230 KTLAVMGFGKVGSEVARRAKGL--------GMNVIA-HDPYAP--ADKARAVGVE--LVSFDQALA--TADFISLHMP 292 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~--------G~~V~~-~d~~~~--~~~a~~~g~~--~~sl~ell~--~aDvV~l~~P 292 (628)
-+|||||+|.||+.-++.++.+ +++|.+ +|+... ...+++.|+. +.+++++++ +.|+|++++|
T Consensus 26 irvgiIG~G~ig~~H~~a~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~g~~~~y~d~~ell~~~~iDaV~IatP 103 (393)
T 4fb5_A 26 LGIGLIGTGYMGKCHALAWNAVKTVFGDVERPRLVHLAEANAGLAEARAGEFGFEKATADWRALIADPEVDVVSVTTP 103 (393)
T ss_dssp CEEEEECCSHHHHHHHHHHTTHHHHHCSSCCCEEEEEECC--TTHHHHHHHHTCSEEESCHHHHHHCTTCCEEEECSC
T ss_pred ccEEEEcCCHHHHHHHHHHHhhhhhhccCCCcEEEEEECCCHHHHHHHHHHhCCCeecCCHHHHhcCCCCcEEEECCC
Confidence 4899999999999877766543 567765 687653 3345667774 348999996 4799999999
|
| >3sds_A Ornithine carbamoyltransferase, mitochondrial; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.80A {Coccidioides immitis} | Back alignment and structure |
|---|
Probab=95.79 E-value=0.098 Score=55.26 Aligned_cols=138 Identities=17% Similarity=0.168 Sum_probs=83.2
Q ss_pred HHHhcCceEEcCCCCChhhHHHHHHHHHHHHHHchhHHHHHHHcCccc---ccccceeeecCCeEEEEecC-hhHHHHHH
Q 006864 171 AATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWL---RSKYVGVSLVGKTLAVMGFG-KVGSEVAR 246 (628)
Q Consensus 171 aa~~~GI~V~n~p~~~~~avAE~~l~l~L~~~R~i~~~~~~~~~g~W~---~~~~~g~~l~GktiGIIGlG-~IG~~vA~ 246 (628)
.|...+|+|+|+-+....++ .+++=++.+.+++ |.+. ........+.|++|++||=+ ++..+++.
T Consensus 138 lA~~s~vPVINag~d~~HPt--QaLaDl~TI~E~~---------G~~~~~~~~~~~~~~l~glkva~vGD~~nva~Sl~~ 206 (353)
T 3sds_A 138 LAKHSSVPVINALCDTFHPL--QAIADFLTIHESF---------ASQSATHGTHPSSLGLEGLKIAWVGDANNVLFDLAI 206 (353)
T ss_dssp HHHHCSSCEEEEECSSCCHH--HHHHHHHHHHHHT---------C--------CTTCCSCTTCEEEEESCCCHHHHHHHH
T ss_pred HHhhCCCCEEECCCCCCCcH--HHHHHHHHHHHHh---------CCCcccccccccccccCCCEEEEECCCchHHHHHHH
Confidence 34556899999854433222 1233333333322 2110 00112345799999999976 57788888
Q ss_pred HHHcCCCEEEEECCCC---ChhH---HHHc------C--Ccc-cCHHHHhccCCEEEEcC--CCCcc----------ccc
Q 006864 247 RAKGLGMNVIAHDPYA---PADK---ARAV------G--VEL-VSFDQALATADFISLHM--PLNPT----------TSK 299 (628)
Q Consensus 247 ~l~~~G~~V~~~d~~~---~~~~---a~~~------g--~~~-~sl~ell~~aDvV~l~~--Plt~~----------t~~ 299 (628)
.+..||++|.+..|.. +.+. +++. | +.. .+++|.++.||+|..-. +...+ ...
T Consensus 207 ~l~~lG~~v~~~~P~~~~~~~~i~~~~~~~a~~~~~g~~~~~~~d~~eav~~aDVvytd~w~smg~E~~~~~r~~~~~~y 286 (353)
T 3sds_A 207 AATKMGVNVAVATPRGYEIPSHIVELIQKAREGVQSPGNLTQTTVPEVAVKDADVIVTDTWISMGQETEKIKRLEAFKDF 286 (353)
T ss_dssp HHHHTTCEEEEECCTTCCCCHHHHHHHHHHHTTCSSCCCEEEESCHHHHTTTCSEEEECCC--------CHHHHHHTTTC
T ss_pred HHHHcCCEEEEECCcccCCCHHHHHHHHHhhhhccCCCeEEEECCHHHHhcCCCEEEeCCccCCchhhHHHHHHHHhhCc
Confidence 8899999999988753 2221 1221 2 222 38999999999998743 22221 124
Q ss_pred cccHHHHhc--CCCCcEEEEcC
Q 006864 300 IFNDETFAK--MKKGVRIVNVA 319 (628)
Q Consensus 300 li~~~~l~~--mk~gailIN~a 319 (628)
.++.+.+++ +|++++|.-|.
T Consensus 287 ~vt~ell~~~~ak~~ai~MHcL 308 (353)
T 3sds_A 287 KVTSELAKRGGAKENWKFMHCL 308 (353)
T ss_dssp CBCHHHHHHHTCCTTCEEEECS
T ss_pred eecHHHHhhcccCCCcEEECCC
Confidence 578888887 78888888885
|
| >3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1} | Back alignment and structure |
|---|
Probab=95.78 E-value=0.014 Score=64.31 Aligned_cols=97 Identities=22% Similarity=0.342 Sum_probs=69.5
Q ss_pred eeeecCCeEEEEecC----------hhHHHHHHHHHcCCCEEEEECCCCChhHHHHcCCcc-cCHHHHhccCCEEEEcCC
Q 006864 224 GVSLVGKTLAVMGFG----------KVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVEL-VSFDQALATADFISLHMP 292 (628)
Q Consensus 224 g~~l~GktiGIIGlG----------~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~-~sl~ell~~aDvV~l~~P 292 (628)
+..+.|++|+|+|+- .=...+++.|...|.+|.+|||+.... . .+.+ .++++.++.||+|+++++
T Consensus 348 ~~~~~~~~v~vlGlafK~~tdD~R~Sp~~~i~~~L~~~g~~V~~~DP~~~~~--~--~~~~~~~~~~~~~~ad~vvi~t~ 423 (478)
T 3g79_A 348 GKKMDGSKVAMLGWAFIKDSDDARNTPSEPYRDLCLKAGASVMVHDPYVVNY--P--GVEISDNLEEVVRNADAIVVLAG 423 (478)
T ss_dssp TCCSTTCEEEEECSSSSTTCSCCTTCTHHHHHHHHHHHTCEEEEECSSCCCB--T--TBCEESCHHHHHTTCSEEEECSC
T ss_pred ccCCCCCEEEEEeeecCCCCcchhcCcHHHHHHHHHHCCCEEEEECCCcccc--c--CcceecCHHHHHhcCCEEEEecC
Confidence 457899999999974 235889999999999999999997521 1 1222 378999999999999987
Q ss_pred CCccccccccHHH-HhcCC-CCcEEEEcCCCchhcHHH
Q 006864 293 LNPTTSKIFNDET-FAKMK-KGVRIVNVARGGVIDEEA 328 (628)
Q Consensus 293 lt~~t~~li~~~~-l~~mk-~gailIN~aRg~~vde~a 328 (628)
.++-+. ++-+. .+.|+ +..+|+|+ |+ +.|.+.
T Consensus 424 -~~~f~~-~d~~~~~~~~~~~~~~i~D~-rn-~~~~~~ 457 (478)
T 3g79_A 424 -HSAYSS-LKADWAKKVSAKANPVIIDG-RN-VIEPDE 457 (478)
T ss_dssp -CHHHHS-CCHHHHHHHHCCSSCEEEES-SS-CSCHHH
T ss_pred -CHHHHh-hhHHHHHHHhccCCCEEEEC-CC-CCCHHH
Confidence 333333 34443 44577 47899995 44 456554
|
| >2nu8_A Succinyl-COA ligase [ADP-forming] subunit alpha; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.2.1.8 c.23.4.1 PDB: 2nu9_A* 2nu7_A* 2nua_A* 2nu6_A* 2scu_A* 1jll_A* 1scu_A* 1jkj_A* 1cqj_A* 1cqi_A* | Back alignment and structure |
|---|
Probab=95.77 E-value=0.014 Score=60.07 Aligned_cols=104 Identities=18% Similarity=0.248 Sum_probs=66.3
Q ss_pred CCeEEEEec-ChhHHHHHHHHHcCCCEEE-EECCCCChhHHHHcCCccc-CHHHHhc--cCCEEEEcCCCCccccccccH
Q 006864 229 GKTLAVMGF-GKVGSEVARRAKGLGMNVI-AHDPYAPADKARAVGVELV-SFDQALA--TADFISLHMPLNPTTSKIFND 303 (628)
Q Consensus 229 GktiGIIGl-G~IG~~vA~~l~~~G~~V~-~~d~~~~~~~a~~~g~~~~-sl~ell~--~aDvV~l~~Plt~~t~~li~~ 303 (628)
..+|+|+|+ |++|+.+++.++..|++++ .+||..... ...|+... +++++.+ ..|++++++|-. .....+ .
T Consensus 7 ~~rVaViG~sG~~G~~~~~~l~~~g~~~V~~V~p~~~g~--~~~G~~vy~sl~el~~~~~~D~viI~tP~~-~~~~~~-~ 82 (288)
T 2nu8_A 7 NTKVICQGFTGSQGTFHSEQAIAYGTKMVGGVTPGKGGT--THLGLPVFNTVREAVAATGATASVIYVPAP-FCKDSI-L 82 (288)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECTTCTTC--EETTEEEESSHHHHHHHHCCCEEEECCCGG-GHHHHH-H
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCCCcccc--eeCCeeccCCHHHHhhcCCCCEEEEecCHH-HHHHHH-H
Confidence 368999999 9999999999998899855 578753201 13465544 7999998 899999999932 222222 2
Q ss_pred HHHhcCCCCcEEEEcCCCc-hhcHHHHHHHHhCCCe
Q 006864 304 ETFAKMKKGVRIVNVARGG-VIDEEALVRALDSGVV 338 (628)
Q Consensus 304 ~~l~~mk~gailIN~aRg~-~vde~aL~~aL~~g~i 338 (628)
+.++ .... .+|..+-|- .-+.+.|.++.++..+
T Consensus 83 ea~~-~Gi~-~iVi~t~G~~~~~~~~l~~~A~~~gv 116 (288)
T 2nu8_A 83 EAID-AGIK-LIITITEGIPTLDMLTVKVKLDEAGV 116 (288)
T ss_dssp HHHH-TTCS-EEEECCCCCCHHHHHHHHHHHHHHTC
T ss_pred HHHH-CCCC-EEEEECCCCCHHHHHHHHHHHHHcCC
Confidence 2232 2222 234444443 3345578887766443
|
| >4fgw_A Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxidoreductase; 2.45A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.76 E-value=0.0089 Score=64.17 Aligned_cols=89 Identities=16% Similarity=0.234 Sum_probs=61.1
Q ss_pred eEEEEecChhHHHHHHHHHcCC--------CEEEEECCCCC---hhHHHHc-----------CCc------c-cCHHHHh
Q 006864 231 TLAVMGFGKVGSEVARRAKGLG--------MNVIAHDPYAP---ADKARAV-----------GVE------L-VSFDQAL 281 (628)
Q Consensus 231 tiGIIGlG~IG~~vA~~l~~~G--------~~V~~~d~~~~---~~~a~~~-----------g~~------~-~sl~ell 281 (628)
+|+|||.|.-|.++|..|...| .+|..|.+... ....+.. |++ . .++++.+
T Consensus 36 KI~ViGaGsWGTALA~~la~ng~~~~~~~~~~V~lw~r~~e~~~~~~~e~in~~~~N~~YLpgv~Lp~~i~~t~dl~~al 115 (391)
T 4fgw_A 36 KVTVIGSGNWGTTIAKVVAENCKGYPEVFAPIVQMWVFEEEINGEKLTEIINTRHQNVKYLPGITLPDNLVANPDLIDSV 115 (391)
T ss_dssp EEEEECCSHHHHHHHHHHHHHHHHCTTTEEEEEEEECCCCBSSSCBHHHHHTTTCCBTTTBTTCCCCSSEEEESCHHHHH
T ss_pred eEEEECcCHHHHHHHHHHHHcCCCccccCCceEEEEEcchHhhhHHHHHHHHhcCcCcccCCCCcCCCCcEEeCCHHHHH
Confidence 8999999999999999997543 46888865431 1111110 121 1 2799999
Q ss_pred ccCCEEEEcCCCCccccccccHHHHhcCCCCcEEEEcCCC
Q 006864 282 ATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARG 321 (628)
Q Consensus 282 ~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg 321 (628)
+.||+|++++|. ...+.++ ++.-..++++..+|+++-|
T Consensus 116 ~~ad~ii~avPs-~~~r~~l-~~l~~~~~~~~~iv~~~KG 153 (391)
T 4fgw_A 116 KDVDIIVFNIPH-QFLPRIC-SQLKGHVDSHVRAISCLKG 153 (391)
T ss_dssp TTCSEEEECSCG-GGHHHHH-HHHTTTSCTTCEEEECCCS
T ss_pred hcCCEEEEECCh-hhhHHHH-HHhccccCCCceeEEeccc
Confidence 999999999993 2233332 3334457889999999877
|
| >3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=95.72 E-value=0.0063 Score=66.34 Aligned_cols=111 Identities=14% Similarity=0.173 Sum_probs=72.9
Q ss_pred eecCCeEEEEecChhHHHHHHHHHcCCCEEEEECCCCC---h--hHHHHcCCccc---CHHHHhcc-CCEEEEcCCCCcc
Q 006864 226 SLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAP---A--DKARAVGVELV---SFDQALAT-ADFISLHMPLNPT 296 (628)
Q Consensus 226 ~l~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~---~--~~a~~~g~~~~---sl~ell~~-aDvV~l~~Plt~~ 296 (628)
++.||++.|||+|..|.++|+.|+..|++|.++|.... . +..++.|++.. ..++++.. +|+|++.--..++
T Consensus 6 ~~~~k~v~viG~G~sG~s~A~~l~~~G~~V~~~D~~~~~~~~~~~~L~~~gi~~~~g~~~~~~~~~~~d~vv~spgi~~~ 85 (451)
T 3lk7_A 6 TFENKKVLVLGLARSGEAAARLLAKLGAIVTVNDGKPFDENPTAQSLLEEGIKVVCGSHPLELLDEDFCYMIKNPGIPYN 85 (451)
T ss_dssp TTTTCEEEEECCTTTHHHHHHHHHHTTCEEEEEESSCGGGCHHHHHHHHTTCEEEESCCCGGGGGSCEEEEEECTTSCTT
T ss_pred hcCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEeCCcccCChHHHHHHhCCCEEEECCChHHhhcCCCCEEEECCcCCCC
Confidence 46799999999999999999999999999999997541 1 23345677543 23456676 8999885322222
Q ss_pred c----------cccccHH-HHhc-CCCCcEEEEcCCCchhcHHHHHHHHhCC
Q 006864 297 T----------SKIFNDE-TFAK-MKKGVRIVNVARGGVIDEEALVRALDSG 336 (628)
Q Consensus 297 t----------~~li~~~-~l~~-mk~gailIN~aRg~~vde~aL~~aL~~g 336 (628)
. ..++.+- .+.. ++.-.+-|-=+.|+.--..-+...|+..
T Consensus 86 ~p~~~~a~~~gi~v~~~~e~~~~~~~~~~IaVTGTnGKTTTt~ml~~iL~~~ 137 (451)
T 3lk7_A 86 NPMVKKALEKQIPVLTEVELAYLVSESQLIGITGSNGKTTTTTMIAEVLNAG 137 (451)
T ss_dssp SHHHHHHHHTTCCEECHHHHHHHHCCSEEEEEECSSCHHHHHHHHHHHHHHT
T ss_pred ChhHHHHHHCCCcEEeHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHHhc
Confidence 1 1134432 3333 3333344444578888787777777653
|
| >3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=95.71 E-value=0.017 Score=60.34 Aligned_cols=88 Identities=22% Similarity=0.264 Sum_probs=63.9
Q ss_pred cCCeEEEEecChhHHHHHHHHHcCCCEEEEECCCC-ChhHHHHcCCccc--CHHHHhccCCEEEEcCCCCccccccccHH
Q 006864 228 VGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA-PADKARAVGVELV--SFDQALATADFISLHMPLNPTTSKIFNDE 304 (628)
Q Consensus 228 ~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~g~~~~--sl~ell~~aDvV~l~~Plt~~t~~li~~~ 304 (628)
.|.++.|+|.|.||...++.++.+|++|++.++.. ..+.++++|+..+ +.+++.+..|+|+-++.... .-..
T Consensus 176 ~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~v~~~~~~~~~~~D~vid~~g~~~-----~~~~ 250 (348)
T 3two_A 176 KGTKVGVAGFGGLGSMAVKYAVAMGAEVSVFARNEHKKQDALSMGVKHFYTDPKQCKEELDFIISTIPTHY-----DLKD 250 (348)
T ss_dssp TTCEEEEESCSHHHHHHHHHHHHTTCEEEEECSSSTTHHHHHHTTCSEEESSGGGCCSCEEEEEECCCSCC-----CHHH
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHhcCCCeecCCHHHHhcCCCEEEECCCcHH-----HHHH
Confidence 47899999999999999999999999999998765 4566777776432 22333335788877765321 1245
Q ss_pred HHhcCCCCcEEEEcCC
Q 006864 305 TFAKMKKGVRIVNVAR 320 (628)
Q Consensus 305 ~l~~mk~gailIN~aR 320 (628)
.++.++++..++.++.
T Consensus 251 ~~~~l~~~G~iv~~G~ 266 (348)
T 3two_A 251 YLKLLTYNGDLALVGL 266 (348)
T ss_dssp HHTTEEEEEEEEECCC
T ss_pred HHHHHhcCCEEEEECC
Confidence 6667788888888764
|
| >2vt3_A REX, redox-sensing transcriptional repressor REX; transcriptional regulation, redox poise; HET: ATP; 2.0A {Bacillus subtilis} PDB: 2vt2_A* | Back alignment and structure |
|---|
Probab=95.69 E-value=0.0065 Score=59.97 Aligned_cols=64 Identities=17% Similarity=0.271 Sum_probs=41.0
Q ss_pred CeEEEEecChhHHHHHHH--HHcCCCEEEE-ECCCCChhHHHHcCCc---ccCHHHHhccCCEEEEcCCC
Q 006864 230 KTLAVMGFGKVGSEVARR--AKGLGMNVIA-HDPYAPADKARAVGVE---LVSFDQALATADFISLHMPL 293 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~--l~~~G~~V~~-~d~~~~~~~a~~~g~~---~~sl~ell~~aDvV~l~~Pl 293 (628)
++++|||.|++|+.+++. ....|+++.+ +|...........|+. ..++++++++.|++++++|-
T Consensus 86 ~rV~IIGAG~~G~~La~~~~~~~~g~~iVg~~D~dp~k~g~~i~gv~V~~~~dl~eli~~~D~ViIAvPs 155 (215)
T 2vt3_A 86 TDVILIGVGNLGTAFLHYNFTKNNNTKISMAFDINESKIGTEVGGVPVYNLDDLEQHVKDESVAILTVPA 155 (215)
T ss_dssp -CEEEECCSHHHHHHHHCC------CCEEEEEESCTTTTTCEETTEEEEEGGGHHHHCSSCCEEEECSCH
T ss_pred CEEEEEccCHHHHHHHHHHhcccCCcEEEEEEeCCHHHHHhHhcCCeeechhhHHHHHHhCCEEEEecCc
Confidence 479999999999999993 4466888776 4654322111112222 33789999777999999993
|
| >3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A* | Back alignment and structure |
|---|
Probab=95.68 E-value=0.013 Score=61.43 Aligned_cols=98 Identities=16% Similarity=0.109 Sum_probs=61.3
Q ss_pred ecCCeEEEEecChhHHHHHHHHHcCCC--EEEEECCCCChhH--HHHc--------CCcc-cCHHHHhccCCEEEEcCCC
Q 006864 227 LVGKTLAVMGFGKVGSEVARRAKGLGM--NVIAHDPYAPADK--ARAV--------GVEL-VSFDQALATADFISLHMPL 293 (628)
Q Consensus 227 l~GktiGIIGlG~IG~~vA~~l~~~G~--~V~~~d~~~~~~~--a~~~--------g~~~-~sl~ell~~aDvV~l~~Pl 293 (628)
-.+++|+|||.|.||+.+|..+...|+ ++..||....... +.++ .+.. .+..+.++.||+|+++...
T Consensus 7 ~~~~kV~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~i~~~~~~a~~~aDiVvi~ag~ 86 (326)
T 3vku_A 7 KDHQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLEDALPFTSPKKIYSAEYSDAKDADLVVITAGA 86 (326)
T ss_dssp CCCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCEEEECCGGGGTTCSEEEECCCC
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHhhHhhhhhhcCCcEEEECcHHHhcCCCEEEECCCC
Confidence 356899999999999999999987776 9999998532111 1111 1111 2346789999999998753
Q ss_pred Cc---cccc-cc--cH-------HHHhcCCCCcEEEEcCCCchhcH
Q 006864 294 NP---TTSK-IF--ND-------ETFAKMKKGVRIVNVARGGVIDE 326 (628)
Q Consensus 294 t~---~t~~-li--~~-------~~l~~mk~gailIN~aRg~~vde 326 (628)
.. +++. ++ |. +.+....|++++++++ ..+|.
T Consensus 87 ~~kpG~tR~dL~~~N~~I~~~i~~~i~~~~p~a~ilvvt--NPvdi 130 (326)
T 3vku_A 87 PQKPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLVAA--NPVDI 130 (326)
T ss_dssp C----------------CHHHHHHHHHTTTCCSEEEECS--SSHHH
T ss_pred CCCCCchHHHHHHHHHHHHHHHHHHHHhcCCceEEEEcc--CchHH
Confidence 21 1221 22 11 2344456788999986 44443
|
| >3d6n_B Aspartate carbamoyltransferase; reactor, chamber, pores, internal cavity, hydrolase, metal-B pyrimidine biosynthesis, hydrolase-transferase; HET: FLC; 2.30A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=95.67 E-value=0.067 Score=55.07 Aligned_cols=67 Identities=18% Similarity=0.221 Sum_probs=54.0
Q ss_pred eecCCeEEEEec---ChhHHHHHHHHHcCCCEEEEECCCC--ChhHHHHcCCcc-cCHHHHhccCCEEEEcCCCC
Q 006864 226 SLVGKTLAVMGF---GKVGSEVARRAKGLGMNVIAHDPYA--PADKARAVGVEL-VSFDQALATADFISLHMPLN 294 (628)
Q Consensus 226 ~l~GktiGIIGl---G~IG~~vA~~l~~~G~~V~~~d~~~--~~~~a~~~g~~~-~sl~ell~~aDvV~l~~Plt 294 (628)
.+.|.+|+++|= +++..+.+..+..||++|....|.. +.. ..+.|++. .++++.++.||+|.. +-..
T Consensus 143 ~l~gl~va~vGDl~~~rva~Sl~~~~~~~g~~v~~~~P~~~~p~~-~~~~g~~~~~d~~eav~~aDvvy~-~~~q 215 (291)
T 3d6n_B 143 EVKDLRVLYVGDIKHSRVFRSGAPLLNMFGAKIGVCGPKTLIPRD-VEVFKVDVFDDVDKGIDWADVVIW-LRLQ 215 (291)
T ss_dssp CCTTCEEEEESCCTTCHHHHHHHHHHHHTTCEEEEESCGGGSCTT-GGGGCEEEESSHHHHHHHCSEEEE-CCCC
T ss_pred CcCCcEEEEECCCCCCchHHHHHHHHHHCCCEEEEECCchhCCch-HHHCCCEEEcCHHHHhCCCCEEEE-eCcc
Confidence 478999999997 8999999999999999999988753 222 23456553 389999999999998 6654
|
| >3k92_A NAD-GDH, NAD-specific glutamate dehydrogenase; ROCG, oxidoreductase; 2.30A {Bacillus subtilis} PDB: 3k8z_A | Back alignment and structure |
|---|
Probab=95.66 E-value=0.12 Score=55.79 Aligned_cols=107 Identities=21% Similarity=0.311 Sum_probs=73.3
Q ss_pred eeeecCCeEEEEecChhHHHHHHHHHcCCCEEEE-ECC-------CC-ChhHHHHc----C------CcccCHHHHhc-c
Q 006864 224 GVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIA-HDP-------YA-PADKARAV----G------VELVSFDQALA-T 283 (628)
Q Consensus 224 g~~l~GktiGIIGlG~IG~~vA~~l~~~G~~V~~-~d~-------~~-~~~~a~~~----g------~~~~sl~ell~-~ 283 (628)
|.++.|+|+.|-|+|++|+.+|+.|..+|.+|++ .|. .- +.+...+. | .+.++-++++. .
T Consensus 216 g~~l~g~~vaVqG~GnVG~~aa~~l~e~GakVVavsD~~G~iyd~~GlD~~~l~~~~~~~g~i~~~~a~~~~~~~i~~~~ 295 (424)
T 3k92_A 216 GIKLQNARIIIQGFGNAGSFLAKFMHDAGAKVIGISDANGGLYNPDGLDIPYLLDKRDSFGMVTNLFTDVITNEELLEKD 295 (424)
T ss_dssp TCCGGGCEEEEECCSHHHHHHHHHHHHHTCEEEEEECSSCEEECTTCCCHHHHHHHCCSSSCCGGGCSCCBCHHHHHHSC
T ss_pred CCCcccCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCcEECCCCCCHHHHHHHHHHhCCCCCCCcEEecCccceecc
Confidence 4579999999999999999999999999999864 343 31 22222211 2 23456677664 7
Q ss_pred CCEEEEcCCCCccccccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhCCCe
Q 006864 284 ADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVV 338 (628)
Q Consensus 284 aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~~vde~aL~~aL~~g~i 338 (628)
||+++-|.. .+.|+.+....++ -.+|+-.|-+.+ ..++ .+.|.+..|
T Consensus 296 ~DIliPcA~-----~n~I~~~~a~~l~-ak~V~EgAN~p~-t~eA-~~iL~~rGI 342 (424)
T 3k92_A 296 CDILVPAAI-----SNQITAKNAHNIQ-ASIVVERANGPT-TIDA-TKILNERGV 342 (424)
T ss_dssp CSEEEECSC-----SSCBCTTTGGGCC-CSEEECCSSSCB-CHHH-HHHHHHTTC
T ss_pred ccEEeecCc-----ccccChhhHhhcC-ceEEEcCCCCCC-CHHH-HHHHHHCCC
Confidence 999987764 4677777777774 567777788875 4444 355555444
|
| >3f4l_A Putative oxidoreductase YHHX; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.00A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=95.66 E-value=0.013 Score=61.26 Aligned_cols=64 Identities=16% Similarity=0.193 Sum_probs=44.7
Q ss_pred CeEEEEecChhHHH-HHH-HHHc-CCCEEE-EECCCCChh-HHHH-cCCcc-cCHHHHhcc--CCEEEEcCCC
Q 006864 230 KTLAVMGFGKVGSE-VAR-RAKG-LGMNVI-AHDPYAPAD-KARA-VGVEL-VSFDQALAT--ADFISLHMPL 293 (628)
Q Consensus 230 ktiGIIGlG~IG~~-vA~-~l~~-~G~~V~-~~d~~~~~~-~a~~-~g~~~-~sl~ell~~--aDvV~l~~Pl 293 (628)
.++||||+|.||+. .+. .++. -++++. ++|+..... .+.. .++.. .++++++++ .|+|++++|-
T Consensus 3 ~rvgiiG~G~~g~~~~~~~~~~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~ 75 (345)
T 3f4l_A 3 INCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPEEQAPIYSHIHFTSDLDEVLNDPDVKLVVVCTHA 75 (345)
T ss_dssp EEEEEECCSHHHHHHTHHHHTTCTTTEEEEEEECSSCCGGGGSGGGTTCEEESCTHHHHTCTTEEEEEECSCG
T ss_pred eEEEEEecCHHHHHHHHHHHHhcCCCeEEEEEEcCCHhHHHHHHhcCCCceECCHHHHhcCCCCCEEEEcCCh
Confidence 37999999999996 455 3343 478877 578875332 2222 24443 489999986 8999999983
|
| >2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A* | Back alignment and structure |
|---|
Probab=95.57 E-value=0.031 Score=61.51 Aligned_cols=100 Identities=22% Similarity=0.274 Sum_probs=69.7
Q ss_pred eeeecCCeEEEEecC----------hhHHHHHHHHHcCCCEEEEECCCCChhHHHHcC------------Cccc-CHHHH
Q 006864 224 GVSLVGKTLAVMGFG----------KVGSEVARRAKGLGMNVIAHDPYAPADKARAVG------------VELV-SFDQA 280 (628)
Q Consensus 224 g~~l~GktiGIIGlG----------~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g------------~~~~-sl~el 280 (628)
+..+.|++|+|+|+- .=...+++.|...|++|.+|||....+....++ +..+ ++++.
T Consensus 323 ~~~~~~~~v~vlGlafK~~~dD~R~Sp~~~i~~~L~~~g~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (478)
T 2y0c_A 323 GEDLTGRTFAIWGLAFKPNTDDMREAPSRELIAELLSRGARIAAYDPVAQEEARRVIALDLADHPSWLERLSFVDDEAQA 402 (478)
T ss_dssp CSCCTTCEEEEECCSSSSSCCCCTTCHHHHHHHHHHHTTCEEEEECTTTHHHHHHHHHHHTTTCHHHHTTEEECSSHHHH
T ss_pred cccCCCCEEEEEecccCCCCCccccChHHHHHHHHHHCCCEEEEECCCccHHHHHhhccccccccccccceeecCCHHHH
Confidence 456899999999984 256789999999999999999996432112222 3433 68899
Q ss_pred hccCCEEEEcCCCCccccccccHHHH-hcCCCCcEEEEcCCCchhcHHH
Q 006864 281 LATADFISLHMPLNPTTSKIFNDETF-AKMKKGVRIVNVARGGVIDEEA 328 (628)
Q Consensus 281 l~~aDvV~l~~Plt~~t~~li~~~~l-~~mk~gailIN~aRg~~vde~a 328 (628)
++.||+|++++.-. +-+. ++-+.+ +.|+ ..+|+|+ |+ +.|.+.
T Consensus 403 ~~~ad~~vi~t~~~-~f~~-~~~~~~~~~~~-~~~i~D~-r~-~~~~~~ 446 (478)
T 2y0c_A 403 ARDADALVIVTEWK-IFKS-PDFVALGRLWK-TPVIFDG-RN-LYEPET 446 (478)
T ss_dssp TTTCSEEEECSCCG-GGGS-CCHHHHHTTCS-SCEEEES-SC-CSCHHH
T ss_pred HhCCCEEEEecCCh-Hhhc-cCHHHHHhhcC-CCEEEEC-CC-CCCHHH
Confidence 99999999998743 3332 355544 4455 4789997 43 455543
|
| >3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=95.57 E-value=0.031 Score=53.26 Aligned_cols=93 Identities=16% Similarity=0.240 Sum_probs=57.8
Q ss_pred CeEEEEe-cChhHHHHHHHHHcCCCEEEEECCCCChhHHHHcCCccc--CHH----HHhccCCEEEEcCCCCccccc---
Q 006864 230 KTLAVMG-FGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELV--SFD----QALATADFISLHMPLNPTTSK--- 299 (628)
Q Consensus 230 ktiGIIG-lG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~--sl~----ell~~aDvV~l~~Plt~~t~~--- 299 (628)
++|.|.| .|.||+.+++.|...|++|++.++..........+++.+ ++. +.+..+|+|+.+.........
T Consensus 1 MkvlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~d~vi~~ag~~~~~~~~~~ 80 (221)
T 3ew7_A 1 MKIGIIGATGRAGSRILEEAKNRGHEVTAIVRNAGKITQTHKDINILQKDIFDLTLSDLSDQNVVVDAYGISPDEAEKHV 80 (221)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCSHHHHHHCSSSEEEECCGGGCCHHHHTTCSEEEECCCSSTTTTTSHH
T ss_pred CeEEEEcCCchhHHHHHHHHHhCCCEEEEEEcCchhhhhccCCCeEEeccccChhhhhhcCCCEEEECCcCCccccchHH
Confidence 4789999 599999999999999999999988753221111333322 221 678889999888865432211
Q ss_pred cccHHHHhcCCC--CcEEEEcCCCc
Q 006864 300 IFNDETFAKMKK--GVRIVNVARGG 322 (628)
Q Consensus 300 li~~~~l~~mk~--gailIN~aRg~ 322 (628)
......++.|++ ...+|.++...
T Consensus 81 ~~~~~l~~a~~~~~~~~~v~~SS~~ 105 (221)
T 3ew7_A 81 TSLDHLISVLNGTVSPRLLVVGGAA 105 (221)
T ss_dssp HHHHHHHHHHCSCCSSEEEEECCCC
T ss_pred HHHHHHHHHHHhcCCceEEEEecce
Confidence 011334444443 24666665543
|
| >1xyg_A Putative N-acetyl-gamma-glutamyl-phosphate reduct; structural genomics, protein structure initiative, CENT eukaryotic structural genomics; 2.19A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.1 PDB: 2q49_A 2cvo_A | Back alignment and structure |
|---|
Probab=95.55 E-value=0.027 Score=59.70 Aligned_cols=85 Identities=19% Similarity=0.286 Sum_probs=54.9
Q ss_pred CCeEEEEe-cChhHHHHHHHHHcCC-CEEEEECCCCCh--hHHHH----cC-----CcccCHHHHhccCCEEEEcCCCCc
Q 006864 229 GKTLAVMG-FGKVGSEVARRAKGLG-MNVIAHDPYAPA--DKARA----VG-----VELVSFDQALATADFISLHMPLNP 295 (628)
Q Consensus 229 GktiGIIG-lG~IG~~vA~~l~~~G-~~V~~~d~~~~~--~~a~~----~g-----~~~~sl~ell~~aDvV~l~~Plt~ 295 (628)
..++||+| +|.||+.+.+.|.... +++.+....... ..... .+ +...+ ++.+..+|+|++|+|...
T Consensus 16 ~~kV~IiGAtG~iG~~llr~L~~~p~~elvai~~~~~~g~~~~~~~~~~~~~v~~dl~~~~-~~~~~~vDvVf~atp~~~ 94 (359)
T 1xyg_A 16 DIRIGLLGASGYTGAEIVRLLANHPHFQVTLMTADRKAGQSMESVFPHLRAQKLPTLVSVK-DADFSTVDAVFCCLPHGT 94 (359)
T ss_dssp CEEEEEECCSSHHHHHHHHHHHTCSSEEEEEEBCSTTTTSCHHHHCGGGTTSCCCCCBCGG-GCCGGGCSEEEECCCTTT
T ss_pred CcEEEEECcCCHHHHHHHHHHHcCCCcEEEEEeCchhcCCCHHHhCchhcCcccccceecc-hhHhcCCCEEEEcCCchh
Confidence 45899999 9999999999998765 587776433211 11111 11 11123 556678999999998443
Q ss_pred cccccccHHHHhcCCCCcEEEEcCC
Q 006864 296 TTSKIFNDETFAKMKKGVRIVNVAR 320 (628)
Q Consensus 296 ~t~~li~~~~l~~mk~gailIN~aR 320 (628)
. .+.....+.|+.+|+.+.
T Consensus 95 s------~~~a~~~~aG~~VId~sa 113 (359)
T 1xyg_A 95 T------QEIIKELPTALKIVDLSA 113 (359)
T ss_dssp H------HHHHHTSCTTCEEEECSS
T ss_pred H------HHHHHHHhCCCEEEECCc
Confidence 1 222233377999999874
|
| >2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A* | Back alignment and structure |
|---|
Probab=95.53 E-value=0.0074 Score=63.58 Aligned_cols=91 Identities=11% Similarity=0.063 Sum_probs=62.1
Q ss_pred eecCCeEEEEecChhHHHHHHHHHcCCCEEEEECCCC---C-hhHHHHcCCcccC---HHHHh----ccCCEEEEcCCCC
Q 006864 226 SLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA---P-ADKARAVGVELVS---FDQAL----ATADFISLHMPLN 294 (628)
Q Consensus 226 ~l~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~---~-~~~a~~~g~~~~s---l~ell----~~aDvV~l~~Plt 294 (628)
.+.|+++.|+|.|.||..+++.++.+|++|++.++.. . .+.++++|+..++ +.+.+ ...|+|+-++...
T Consensus 178 ~~~g~~VlV~GaG~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~~~ga~~v~~~~~~~~~~~~~~~~d~vid~~g~~ 257 (366)
T 2cdc_A 178 TLNCRKVLVVGTGPIGVLFTLLFRTYGLEVWMANRREPTEVEQTVIEETKTNYYNSSNGYDKLKDSVGKFDVIIDATGAD 257 (366)
T ss_dssp SSTTCEEEEESCHHHHHHHHHHHHHHTCEEEEEESSCCCHHHHHHHHHHTCEEEECTTCSHHHHHHHCCEEEEEECCCCC
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCccchHHHHHHHHhCCceechHHHHHHHHHhCCCCCEEEECCCCh
Confidence 5679999999999999999999999999999998764 2 2345556654331 11111 2478887777632
Q ss_pred ccccccccHHHHhcCCCCcEEEEcCC
Q 006864 295 PTTSKIFNDETFAKMKKGVRIVNVAR 320 (628)
Q Consensus 295 ~~t~~li~~~~l~~mk~gailIN~aR 320 (628)
... + ...+..|+++..+++++-
T Consensus 258 ~~~---~-~~~~~~l~~~G~iv~~g~ 279 (366)
T 2cdc_A 258 VNI---L-GNVIPLLGRNGVLGLFGF 279 (366)
T ss_dssp THH---H-HHHGGGEEEEEEEEECSC
T ss_pred HHH---H-HHHHHHHhcCCEEEEEec
Confidence 211 0 445666777778887763
|
| >1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A | Back alignment and structure |
|---|
Probab=95.50 E-value=0.021 Score=59.96 Aligned_cols=89 Identities=21% Similarity=0.288 Sum_probs=65.2
Q ss_pred cCCeEEEEecChhHHHHHHHHHcCCCEEEEECCCC-ChhHHHHcCCccc-------CHHHHh-ccCCEEEEcCCCC-ccc
Q 006864 228 VGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA-PADKARAVGVELV-------SFDQAL-ATADFISLHMPLN-PTT 297 (628)
Q Consensus 228 ~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~g~~~~-------sl~ell-~~aDvV~l~~Plt-~~t 297 (628)
.|+++.|+|.|.||...++.++.+|++|++.++.. ..+.++++|+..+ ++.+.+ ...|+|+-++..+ +++
T Consensus 179 ~g~~VlV~GaG~vG~~~~qlak~~Ga~Vi~~~~~~~~~~~~~~lGa~~v~~~~~~~~~~~~~~~~~D~vid~~g~~~~~~ 258 (360)
T 1piw_A 179 PGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAMKMGADHYIATLEEGDWGEKYFDTFDLIVVCASSLTDID 258 (360)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHHTCSEEEEGGGTSCHHHHSCSCEEEEEECCSCSTTCC
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHcCCCEEEcCcCchHHHHHhhcCCCEEEECCCCCcHHH
Confidence 47899999999999999999999999999998765 4556677786432 222222 3689999888742 111
Q ss_pred cccccHHHHhcCCCCcEEEEcCC
Q 006864 298 SKIFNDETFAKMKKGVRIVNVAR 320 (628)
Q Consensus 298 ~~li~~~~l~~mk~gailIN~aR 320 (628)
-...++.|+++..++.++.
T Consensus 259 ----~~~~~~~l~~~G~iv~~g~ 277 (360)
T 1piw_A 259 ----FNIMPKAMKVGGRIVSISI 277 (360)
T ss_dssp ----TTTGGGGEEEEEEEEECCC
T ss_pred ----HHHHHHHhcCCCEEEEecC
Confidence 2345677889999998874
|
| >4gqa_A NAD binding oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: MSE; 2.42A {Klebsiella pneumoniae} | Back alignment and structure |
|---|
Probab=95.50 E-value=0.011 Score=63.37 Aligned_cols=62 Identities=18% Similarity=0.309 Sum_probs=47.1
Q ss_pred eEEEEecChhHHHHHHHHHcC---------CCEEEE-ECCCCC--hhHHHHcCCc--ccCHHHHhc--cCCEEEEcCC
Q 006864 231 TLAVMGFGKVGSEVARRAKGL---------GMNVIA-HDPYAP--ADKARAVGVE--LVSFDQALA--TADFISLHMP 292 (628)
Q Consensus 231 tiGIIGlG~IG~~vA~~l~~~---------G~~V~~-~d~~~~--~~~a~~~g~~--~~sl~ell~--~aDvV~l~~P 292 (628)
+|||||+|.||+.-++.++.. +.+|.+ +|+... ...+++.|+. +.+++++++ +.|+|++++|
T Consensus 28 rvgiIG~G~ig~~h~~~~~~~~~~~~~~~~~~elvav~d~~~~~a~~~a~~~~~~~~y~d~~~ll~~~~vD~V~I~tp 105 (412)
T 4gqa_A 28 NIGLIGSGFMGQAHADAYRRAAMFYPDLPKRPHLYALADQDQAMAERHAAKLGAEKAYGDWRELVNDPQVDVVDITSP 105 (412)
T ss_dssp EEEEECCSHHHHHHHHHHHHHHHHCTTSSSEEEEEEEECSSHHHHHHHHHHHTCSEEESSHHHHHHCTTCCEEEECSC
T ss_pred eEEEEcCcHHHHHHHHHHHhccccccccCCCeEEEEEEcCCHHHHHHHHHHcCCCeEECCHHHHhcCCCCCEEEECCC
Confidence 899999999999988888753 457665 687642 2334566764 348999996 5899999999
|
| >3gdo_A Uncharacterized oxidoreductase YVAA; structural genomics, putative oxidoreductase YVAA, oxidoredu PSI-2, protein structure initiative; 2.03A {Bacillus subtilis subsp} PDB: 3gfg_A | Back alignment and structure |
|---|
Probab=95.48 E-value=0.014 Score=61.42 Aligned_cols=64 Identities=13% Similarity=0.248 Sum_probs=47.3
Q ss_pred CeEEEEecChhHHH-HHHHHHcC-CCEEEE-ECCCCChhHHHHc-CCcc-cCHHHHhc--cCCEEEEcCCCC
Q 006864 230 KTLAVMGFGKVGSE-VARRAKGL-GMNVIA-HDPYAPADKARAV-GVEL-VSFDQALA--TADFISLHMPLN 294 (628)
Q Consensus 230 ktiGIIGlG~IG~~-vA~~l~~~-G~~V~~-~d~~~~~~~a~~~-g~~~-~sl~ell~--~aDvV~l~~Plt 294 (628)
.++||||+|.||+. .+..++.. +++|.+ +|+... ..+... ++.. .+++++++ +.|+|++++|-.
T Consensus 6 ~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~-~~~~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~ 76 (358)
T 3gdo_A 6 IKVGILGYGLSGSVFHGPLLDVLDEYQISKIMTSRTE-EVKRDFPDAEVVHELEEITNDPAIELVIVTTPSG 76 (358)
T ss_dssp EEEEEECCSHHHHHTTHHHHTTCTTEEEEEEECSCHH-HHHHHCTTSEEESSTHHHHTCTTCCEEEECSCTT
T ss_pred ceEEEEccCHHHHHHHHHHHhhCCCeEEEEEEcCCHH-HHHhhCCCCceECCHHHHhcCCCCCEEEEcCCcH
Confidence 48999999999997 67777766 688764 677642 233344 4443 48999998 789999999943
|
| >2nvw_A Galactose/lactose metabolism regulatory protein GAL80; transcription, galactose metabolism, repressor; 2.10A {Kluyveromyces lactis} SCOP: c.2.1.3 d.81.1.5 PDB: 3e1k_A | Back alignment and structure |
|---|
Probab=95.47 E-value=0.021 Score=62.80 Aligned_cols=102 Identities=11% Similarity=0.127 Sum_probs=66.0
Q ss_pred CeEEEEec----ChhHHHHHHHHHcC--CCEEE-EECCCCCh--hHHHHcCCc----ccCHHHHhc--cCCEEEEcCCCC
Q 006864 230 KTLAVMGF----GKVGSEVARRAKGL--GMNVI-AHDPYAPA--DKARAVGVE----LVSFDQALA--TADFISLHMPLN 294 (628)
Q Consensus 230 ktiGIIGl----G~IG~~vA~~l~~~--G~~V~-~~d~~~~~--~~a~~~g~~----~~sl~ell~--~aDvV~l~~Plt 294 (628)
.+|||||+ |.||+..++.++.. +++|. ++|+.... ..++..|+. +.+++++++ +.|+|++++|-.
T Consensus 40 irvgiIG~g~~GG~~g~~h~~~l~~~~~~~~lvav~d~~~~~a~~~a~~~g~~~~~~~~d~~ell~~~~vD~V~I~tp~~ 119 (479)
T 2nvw_A 40 IRVGFVGLTSGKSWVAKTHFLAIQQLSSQFQIVALYNPTLKSSLQTIEQLQLKHATGFDSLESFAQYKDIDMIVVSVKVP 119 (479)
T ss_dssp EEEEEECCCSTTSHHHHTHHHHHHHTTTTEEEEEEECSCHHHHHHHHHHTTCTTCEEESCHHHHHHCTTCSEEEECSCHH
T ss_pred CEEEEEcccCCCCHHHHHHHHHHHhcCCCeEEEEEEeCCHHHHHHHHHHcCCCcceeeCCHHHHhcCCCCCEEEEcCCcH
Confidence 48999999 99999999999876 67865 57876422 234455664 458999996 699999999932
Q ss_pred ccccccccHHHHhcCCCC-------cEEEEc-CCCchhcHHHHHHHHhCC
Q 006864 295 PTTSKIFNDETFAKMKKG-------VRIVNV-ARGGVIDEEALVRALDSG 336 (628)
Q Consensus 295 ~~t~~li~~~~l~~mk~g-------ailIN~-aRg~~vde~aL~~aL~~g 336 (628)
+.. +-..+.|+.| .+++.- ---.+-+.++|+++.++.
T Consensus 120 --~H~---~~~~~al~aG~~~~~~khVl~EKPla~~~~ea~~l~~~a~~~ 164 (479)
T 2nvw_A 120 --EHY---EVVKNILEHSSQNLNLRYLYVEWALAASVQQAEELYSISQQR 164 (479)
T ss_dssp --HHH---HHHHHHHHHSSSCSSCCEEEEESSSSSSHHHHHHHHHHHHTC
T ss_pred --HHH---HHHHHHHHCCCCcCCceeEEEeCCCcCCHHHHHHHHHHHHHc
Confidence 221 1222234444 366653 122344556666666553
|
| >3moi_A Probable dehydrogenase; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics; 2.50A {Bordetella bronchiseptica} | Back alignment and structure |
|---|
Probab=95.46 E-value=0.011 Score=62.83 Aligned_cols=63 Identities=14% Similarity=0.301 Sum_probs=48.9
Q ss_pred CeEEEEecC-hhHHHHHHHHHcC-CCEEE-EECCCCCh--hHHHHcCCcc-cCHHHHhcc--CCEEEEcCC
Q 006864 230 KTLAVMGFG-KVGSEVARRAKGL-GMNVI-AHDPYAPA--DKARAVGVEL-VSFDQALAT--ADFISLHMP 292 (628)
Q Consensus 230 ktiGIIGlG-~IG~~vA~~l~~~-G~~V~-~~d~~~~~--~~a~~~g~~~-~sl~ell~~--aDvV~l~~P 292 (628)
.+|||||+| .+|+..+..++.. ++++. ++|+.... ..+...|+.. .++++++++ .|+|++++|
T Consensus 3 ~rigiiG~G~~~~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~g~~~~~~~~ell~~~~vD~V~i~tp 73 (387)
T 3moi_A 3 IRFGICGLGFAGSVLMAPAMRHHPDAQIVAACDPNEDVRERFGKEYGIPVFATLAEMMQHVQMDAVYIASP 73 (387)
T ss_dssp EEEEEECCSHHHHTTHHHHHHHCTTEEEEEEECSCHHHHHHHHHHHTCCEESSHHHHHHHSCCSEEEECSC
T ss_pred eEEEEEeCCHHHHHHHHHHHHhCCCeEEEEEEeCCHHHHHHHHHHcCCCeECCHHHHHcCCCCCEEEEcCC
Confidence 479999999 9999999999875 57776 47876422 2345567754 489999985 999999999
|
| >2tmg_A Protein (glutamate dehydrogenase); metabolic role, mutant, oxidoreductase; 2.90A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.1 PDB: 1b26_A 1b3b_A | Back alignment and structure |
|---|
Probab=95.42 E-value=0.25 Score=53.32 Aligned_cols=108 Identities=25% Similarity=0.323 Sum_probs=71.4
Q ss_pred eeeecCCeEEEEecChhHHHHHHHHHc-CCCEEEE-EC-------CCC-ChhHH----HHcC-------CcccCHHHHhc
Q 006864 224 GVSLVGKTLAVMGFGKVGSEVARRAKG-LGMNVIA-HD-------PYA-PADKA----RAVG-------VELVSFDQALA 282 (628)
Q Consensus 224 g~~l~GktiGIIGlG~IG~~vA~~l~~-~G~~V~~-~d-------~~~-~~~~a----~~~g-------~~~~sl~ell~ 282 (628)
|.++.|+++.|.|+|++|+.+|+.|.. .|.+|++ .| |.- +.+.. ...+ .+.++.++++.
T Consensus 204 g~~l~g~~vaVqG~GnVG~~~a~~L~e~~GakvVavsD~~G~i~dp~Gld~~~l~~~~~~~g~l~~y~~a~~~~~~eil~ 283 (415)
T 2tmg_A 204 GIDPKKATVAVQGFGNVGQFAALLISQELGSKVVAVSDSRGGIYNPEGFDVEELIRYKKEHGTVVTYPKGERITNEELLE 283 (415)
T ss_dssp TCCTTTCEEEEECCSHHHHHHHHHHHHTTCCEEEEEECSSCEEECTTCCCHHHHHHHHHHSSCSTTCSSSEEECHHHHTT
T ss_pred CCCcCCCEEEEECCcHHHHHHHHHHHHhcCCEEEEEEeCCCeEECCCCCCHHHHHHHHHhhCCcccCCCceEcCchhhhc
Confidence 557999999999999999999999998 9999984 34 321 22211 1111 23446677764
Q ss_pred -cCCEEEEcCCCCccccccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhCCCe
Q 006864 283 -TADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVV 338 (628)
Q Consensus 283 -~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~~vde~aL~~aL~~g~i 338 (628)
.||+++-|.. .+.++.+....++ ..+|+-.+-+.+- .++-....+.|.+
T Consensus 284 ~~~DIliP~A~-----~n~i~~~~a~~l~-ak~V~EgAN~p~t-~~a~~~l~~~Gi~ 333 (415)
T 2tmg_A 284 LDVDILVPAAL-----EGAIHAGNAERIK-AKAVVEGANGPTT-PEADEILSRRGIL 333 (415)
T ss_dssp CSCSEEEECSS-----TTSBCHHHHTTCC-CSEEECCSSSCBC-HHHHHHHHHTTCE
T ss_pred CCCcEEEecCC-----cCccCcccHHHcC-CeEEEeCCCcccC-HHHHHHHHHCCCE
Confidence 7999988875 4556777777773 4577777777764 4443333334433
|
| >3o9z_A Lipopolysaccaride biosynthesis protein WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD AKG; 1.45A {Thermus thermophilus} PDB: 3oa0_A* | Back alignment and structure |
|---|
Probab=95.41 E-value=0.026 Score=58.30 Aligned_cols=63 Identities=19% Similarity=0.308 Sum_probs=47.4
Q ss_pred CeEEEEec-ChhHHHHHHHHHcCCCEEEE-ECCCCChhHH-HHc-CCc-ccCHHHHh----------ccCCEEEEcCC
Q 006864 230 KTLAVMGF-GKVGSEVARRAKGLGMNVIA-HDPYAPADKA-RAV-GVE-LVSFDQAL----------ATADFISLHMP 292 (628)
Q Consensus 230 ktiGIIGl-G~IG~~vA~~l~~~G~~V~~-~d~~~~~~~a-~~~-g~~-~~sl~ell----------~~aDvV~l~~P 292 (628)
.++||||+ |.||+..++.++..+.++.+ +|+......+ +.. +.. +.++++++ .+.|+|++++|
T Consensus 4 irvgiIG~gG~i~~~h~~~l~~~~~~lvav~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~l~~~~~~vD~V~I~tP 81 (312)
T 3o9z_A 4 TRFALTGLAGYIAPRHLKAIKEVGGVLVASLDPATNVGLVDSFFPEAEFFTEPEAFEAYLEDLRDRGEGVDYLSIASP 81 (312)
T ss_dssp CEEEEECTTSSSHHHHHHHHHHTTCEEEEEECSSCCCGGGGGTCTTCEEESCHHHHHHHHHHHHHTTCCCSEEEECSC
T ss_pred eEEEEECCChHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHHhhCCCCceeCCHHHHHHHhhhhcccCCCCcEEEECCC
Confidence 58999999 78999999999988988765 6877543222 222 233 34788887 67999999998
|
| >1obb_A Maltase, alpha-glucosidase; glycosidase, sulfinic acid, NAD+, maltose, hydrolase; HET: MAL NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2 | Back alignment and structure |
|---|
Probab=95.40 E-value=0.019 Score=63.21 Aligned_cols=113 Identities=17% Similarity=0.172 Sum_probs=73.2
Q ss_pred CCeEEEEecChhH--HHHHHHHH---cC-CCEEEEECCCCChh-----HHH----HcC----Ccc-cCHHHHhccCCEEE
Q 006864 229 GKTLAVMGFGKVG--SEVARRAK---GL-GMNVIAHDPYAPAD-----KAR----AVG----VEL-VSFDQALATADFIS 288 (628)
Q Consensus 229 GktiGIIGlG~IG--~~vA~~l~---~~-G~~V~~~d~~~~~~-----~a~----~~g----~~~-~sl~ell~~aDvV~ 288 (628)
.++|+|||.|.+| .++|..+. ++ |.+|..||...... ... ..+ +.. .++++.++.||+|+
T Consensus 3 ~~KIaVIGAGsVg~g~ala~~La~~~~l~~~eV~L~Di~~e~l~~~~~~~~~~l~~~~~~~~I~~ttD~~eal~dAD~VI 82 (480)
T 1obb_A 3 SVKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEVGADLKFEKTMNLDDVIIDADFVI 82 (480)
T ss_dssp CCEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTTCSEEE
T ss_pred CCEEEEECCCchHHHHHHHHHHHhcCcCCCCEEEEEeCCHHHHHHHHHHHHHHhccCCCCcEEEEECCHHHHhCCCCEEE
Confidence 4689999999975 55566663 34 88999999864211 001 111 112 27888999999999
Q ss_pred EcCCCC---------------------cccc-------ccc----c-------HHHHhcCCCCcEEEEcCCCchhcHHHH
Q 006864 289 LHMPLN---------------------PTTS-------KIF----N-------DETFAKMKKGVRIVNVARGGVIDEEAL 329 (628)
Q Consensus 289 l~~Plt---------------------~~t~-------~li----~-------~~~l~~mk~gailIN~aRg~~vde~aL 329 (628)
+++|.. .+|. +++ + .+.+....|++++||++-.-=+-..++
T Consensus 83 iaagv~~~~~~~~dE~ip~K~g~~~~l~dt~g~g~~~~G~~~~~rni~i~~~i~~~i~~~~P~A~ii~~TNPvdi~t~~~ 162 (480)
T 1obb_A 83 NTAMVGGHTYLEKVRQIGEKYGYYRGIDAQEFNMVSDYYTFSNYNQLKYFVDIARKIEKLSPKAWYLQAANPIFEGTTLV 162 (480)
T ss_dssp ECCCTTHHHHHHHHHHHHHHTTCTTCTTCBTTBCCTTCCSSSCHHHHHHHHHHHHHHHHHCTTCEEEECSSCHHHHHHHH
T ss_pred ECCCcccccccccccccccccccccchhhhcCCccchhhhHHhhhhHHHHHHHHHHHHHHCCCeEEEEeCCcHHHHHHHH
Confidence 999741 1110 111 0 133445678999999987666666777
Q ss_pred HHHHhCCCeeEEE
Q 006864 330 VRALDSGVVAQAA 342 (628)
Q Consensus 330 ~~aL~~g~i~ga~ 342 (628)
.+ +...++.|.+
T Consensus 163 ~k-~p~~rviG~c 174 (480)
T 1obb_A 163 TR-TVPIKAVGFC 174 (480)
T ss_dssp HH-HSCSEEEEEC
T ss_pred HH-CCCCcEEecC
Confidence 66 6667888864
|
| >3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=95.39 E-value=0.024 Score=55.26 Aligned_cols=71 Identities=21% Similarity=0.288 Sum_probs=48.5
Q ss_pred eeeecCCeEEEEec-ChhHHHHHHHHHcCCCEEEEECCCCCh-hHHHHcCC-cc------cCHHHHhccCCEEEEcCCCC
Q 006864 224 GVSLVGKTLAVMGF-GKVGSEVARRAKGLGMNVIAHDPYAPA-DKARAVGV-EL------VSFDQALATADFISLHMPLN 294 (628)
Q Consensus 224 g~~l~GktiGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~~g~-~~------~sl~ell~~aDvV~l~~Plt 294 (628)
-..+.||++.|.|. |.||+.+++.|...|++|++.++.... ......++ .. .++.+.+..+|+|+.+....
T Consensus 16 ~~~l~~~~ilVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~D~vi~~ag~~ 95 (236)
T 3e8x_A 16 NLYFQGMRVLVVGANGKVARYLLSELKNKGHEPVAMVRNEEQGPELRERGASDIVVANLEEDFSHAFASIDAVVFAAGSG 95 (236)
T ss_dssp -----CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHTTCSEEEECCTTSCCGGGGTTCSEEEECCCCC
T ss_pred ccCcCCCeEEEECCCChHHHHHHHHHHhCCCeEEEEECChHHHHHHHhCCCceEEEcccHHHHHHHHcCCCEEEECCCCC
Confidence 35689999999997 999999999999999999999887532 22222344 32 13456677788887766543
|
| >3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=95.39 E-value=0.015 Score=61.43 Aligned_cols=68 Identities=15% Similarity=0.212 Sum_probs=46.3
Q ss_pred eecCCeEEEEecChhHHHHHHHHHcCCCEEEEECCCCCh-hHHHHc----CCcc---cCHHHHhccCCEEEEcCCCC
Q 006864 226 SLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPA-DKARAV----GVEL---VSFDQALATADFISLHMPLN 294 (628)
Q Consensus 226 ~l~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~~----g~~~---~sl~ell~~aDvV~l~~Plt 294 (628)
+-+.++|+|+|.|.+|+.+|+.|.. ..+|.+.|+.... +...+. .+.. .+|.++++++|+|+.++|-.
T Consensus 13 ~g~~mkilvlGaG~vG~~~~~~L~~-~~~v~~~~~~~~~~~~~~~~~~~~~~d~~d~~~l~~~~~~~DvVi~~~p~~ 88 (365)
T 3abi_A 13 EGRHMKVLILGAGNIGRAIAWDLKD-EFDVYIGDVNNENLEKVKEFATPLKVDASNFDKLVEVMKEFELVIGALPGF 88 (365)
T ss_dssp ---CCEEEEECCSHHHHHHHHHHTT-TSEEEEEESCHHHHHHHTTTSEEEECCTTCHHHHHHHHTTCSEEEECCCGG
T ss_pred cCCccEEEEECCCHHHHHHHHHHhc-CCCeEEEEcCHHHHHHHhccCCcEEEecCCHHHHHHHHhCCCEEEEecCCc
Confidence 3344589999999999999999975 4788888876421 111111 1111 14778899999999999843
|
| >2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=95.38 E-value=0.05 Score=59.81 Aligned_cols=101 Identities=17% Similarity=0.189 Sum_probs=70.7
Q ss_pred eecCCeEEEEec----------ChhHHHHHHHHHcCCCEEEEECCCCChhHH----HH-c-------CCcc-cCHHHHhc
Q 006864 226 SLVGKTLAVMGF----------GKVGSEVARRAKGLGMNVIAHDPYAPADKA----RA-V-------GVEL-VSFDQALA 282 (628)
Q Consensus 226 ~l~GktiGIIGl----------G~IG~~vA~~l~~~G~~V~~~d~~~~~~~a----~~-~-------g~~~-~sl~ell~ 282 (628)
.+.|++|+|+|+ ..-...+++.|...|.+|.+|||+.+...+ .. + .+.. .++.+.++
T Consensus 332 ~~~~~~v~vlGlafK~~~dd~R~Spa~~i~~~L~~~g~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (481)
T 2o3j_A 332 TVTDKKIAIFGFAFKKNTGDTRESSAIHVIKHLMEEHAKLSVYDPKVQKSQMLNDLASVTSAQDVERLITVESDPYAAAR 411 (481)
T ss_dssp CCTTCEEEEECCSSSTTCCCCTTCHHHHHHHHHHHTTCEEEEECSSSCHHHHHHHHHHHSCHHHHHHHEEEESSHHHHHT
T ss_pred ccCCCeEEEEeeeeCCCCCccccChHHHHHHHHHHCCCEEEEECCCCCchhhHHHHHhhhccccccCceeecCCHHHHHc
Confidence 589999999997 346788999999999999999999754321 11 1 1233 36788999
Q ss_pred cCCEEEEcCCCCccccccccHHHH-hcCCCCcEEEEcCCCchhcHHHHH
Q 006864 283 TADFISLHMPLNPTTSKIFNDETF-AKMKKGVRIVNVARGGVIDEEALV 330 (628)
Q Consensus 283 ~aDvV~l~~Plt~~t~~li~~~~l-~~mk~gailIN~aRg~~vde~aL~ 330 (628)
.||+|++++.- ++-+. ++-+.+ +.|+...+|+|+ |+ ++|.+.+.
T Consensus 412 ~ad~~vi~t~~-~~f~~-~~~~~~~~~~~~~~~i~D~-r~-~~~~~~~~ 456 (481)
T 2o3j_A 412 GAHAIVVLTEW-DEFVE-LNYSQIHNDMQHPAAIFDG-RL-ILDQKALR 456 (481)
T ss_dssp TCSEEEECSCC-GGGTT-SCHHHHHHHSCSSCEEEES-SS-CSCHHHHH
T ss_pred CCCEEEEcCCc-HHhhc-cCHHHHHHhcCCCCEEEEC-CC-CCCHHHHH
Confidence 99999999874 33333 354444 467776689986 43 45655443
|
| >1js1_X Transcarbamylase; alpha/beta topology, two domains, transferase; 2.00A {Bacteroides fragilis} SCOP: c.78.1.1 c.78.1.1 PDB: 2fg6_X* 2fg7_X* 2g7m_X* | Back alignment and structure |
|---|
Probab=95.34 E-value=0.15 Score=53.11 Aligned_cols=126 Identities=13% Similarity=0.008 Sum_probs=80.5
Q ss_pred HHHhcCceEEcCCCCChhhHHHHHHHHHHHHHHchhHHHHHHHcCcccccccce-eeecCCeEEE-----EecChhHHHH
Q 006864 171 AATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSKYVG-VSLVGKTLAV-----MGFGKVGSEV 244 (628)
Q Consensus 171 aa~~~GI~V~n~p~~~~~avAE~~l~l~L~~~R~i~~~~~~~~~g~W~~~~~~g-~~l~GktiGI-----IGlG~IG~~v 244 (628)
.|...+|+|+|.-+....+.- +++=++.+.++ .| ..+. .+|++ +|=+++..+.
T Consensus 130 lA~~~~vPVINa~~~~~HPtQ--aLaDl~Ti~e~------------------~g~~~l~-l~ia~a~~~~vGD~rva~Sl 188 (324)
T 1js1_X 130 FIQHSGRPVFSMEAATRHPLQ--SFADLITIEEY------------------KKTARPK-VVMTWAPHPRPLPQAVPNSF 188 (324)
T ss_dssp HHHHSSSCEEESSCSSCCHHH--HHHHHHHHHHH------------------CSSSSCE-EEEECCCCSSCCCSHHHHHH
T ss_pred HHhhCCCCEEECCCCCCCcHH--HHHHHHHHHHH------------------cCCCCee-EEEEEEcccccCCcchHHHH
Confidence 344567999998765444442 33333333332 12 1356 78999 9999999999
Q ss_pred HHHHHcCCCEEEEECCCC--ChhHHHHcCCcc-cCHHHHhccCCEEEEcCCCC--c---------cccccccHHHHhcCC
Q 006864 245 ARRAKGLGMNVIAHDPYA--PADKARAVGVEL-VSFDQALATADFISLHMPLN--P---------TTSKIFNDETFAKMK 310 (628)
Q Consensus 245 A~~l~~~G~~V~~~d~~~--~~~~a~~~g~~~-~sl~ell~~aDvV~l~~Plt--~---------~t~~li~~~~l~~mk 310 (628)
+..+..||++|....|.. +..... .++.. .+++++++.||+|..-.=.. . .....++.+.++++|
T Consensus 189 ~~~~~~~G~~v~~~~P~~~~~~~~~~-~~~~~~~d~~eav~~aDvvy~~~w~s~g~~~~~~~~~r~~~y~vt~e~l~~a~ 267 (324)
T 1js1_X 189 AEWMNATDYEFVITHPEGYELDPKFV-GNARVEYDQMKAFEGADFIYAKNWAAYTGDNYGQILSTDRNWTVGDRQMAVTN 267 (324)
T ss_dssp HHHHHTSSSEEEEECCTTCCCCHHHH-TTCEEESCHHHHHTTCSEEEECCCCCCSTTCTTCCCCCCTTSSBCHHHHTTSS
T ss_pred HHHHHHCCCEEEEeCCcccCCChhhc-cceEEECCHHHHhCCCCEEEecCcccCCCccccchHHHhcCcccCHHHHHhcC
Confidence 999999999999998854 222111 24543 48999999999998833211 0 012445666666666
Q ss_pred CCcEEEEcC
Q 006864 311 KGVRIVNVA 319 (628)
Q Consensus 311 ~gailIN~a 319 (628)
+++|.-|.
T Consensus 268 -~ai~MHcL 275 (324)
T 1js1_X 268 -NAYFMHCL 275 (324)
T ss_dssp -SCEEECCS
T ss_pred -CcEEECCC
Confidence 66666663
|
| >3oa2_A WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD; 1.50A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=95.33 E-value=0.028 Score=58.28 Aligned_cols=63 Identities=22% Similarity=0.351 Sum_probs=47.0
Q ss_pred CeEEEEec-ChhHHHHHHHHHcCCCEEEE-ECCCCChhHH-HHc-CCc-ccCHHHHh-----------ccCCEEEEcCC
Q 006864 230 KTLAVMGF-GKVGSEVARRAKGLGMNVIA-HDPYAPADKA-RAV-GVE-LVSFDQAL-----------ATADFISLHMP 292 (628)
Q Consensus 230 ktiGIIGl-G~IG~~vA~~l~~~G~~V~~-~d~~~~~~~a-~~~-g~~-~~sl~ell-----------~~aDvV~l~~P 292 (628)
.++||||+ |.||+..++.++..+.++.+ +|+......+ ... +.. +.++++++ .+.|+|++++|
T Consensus 4 irvgiIG~gG~i~~~h~~~l~~~~~~lvav~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~l~~~~~~~vD~V~I~tP 82 (318)
T 3oa2_A 4 KNFALIGAAGYIAPRHMRAIKDTGNCLVSAYDINDSVGIIDSISPQSEFFTEFEFFLDHASNLKRDSATALDYVSICSP 82 (318)
T ss_dssp CEEEEETTTSSSHHHHHHHHHHTTCEEEEEECSSCCCGGGGGTCTTCEEESSHHHHHHHHHHHTTSTTTSCCEEEECSC
T ss_pred eEEEEECCCcHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHHhhCCCCcEECCHHHHHHhhhhhhhccCCCCcEEEECCC
Confidence 58999999 79999999999988988765 6876543222 222 233 34788887 57999999998
|
| >4h31_A Otcase, ornithine carbamoyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PE5; 1.70A {Vibrio vulnificus} PDB: 3upd_A* | Back alignment and structure |
|---|
Probab=95.32 E-value=0.26 Score=52.21 Aligned_cols=130 Identities=18% Similarity=0.225 Sum_probs=84.1
Q ss_pred HHHhcCceEEcCCCCChhhHHHHHHHHHHHHHHchhHHHHHHHcCcccccccceeeecCCeEEEEecC--hhHHHHHHHH
Q 006864 171 AATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGKTLAVMGFG--KVGSEVARRA 248 (628)
Q Consensus 171 aa~~~GI~V~n~p~~~~~avAE~~l~l~L~~~R~i~~~~~~~~~g~W~~~~~~g~~l~GktiGIIGlG--~IG~~vA~~l 248 (628)
.+..-+|+|.|.-|....++- +++=++.+.++ +.+..+.|++|+++|=| ++..+.+..+
T Consensus 142 la~~s~vPVING~g~~~HPtQ--aL~Dl~Ti~e~-----------------~~~~~l~gl~ia~vGD~~~~va~S~~~~~ 202 (358)
T 4h31_A 142 LGAFAGVPVWNGLTDEFHPTQ--ILADFLTMLEH-----------------SQGKALADIQFAYLGDARNNVGNSLMVGA 202 (358)
T ss_dssp HHHHSSSCEEESCCSSCCHHH--HHHHHHHHHHT-----------------TTTCCGGGCEEEEESCTTSHHHHHHHHHH
T ss_pred hhhhccCceECCCCcCCCchH--HHHHHHHHHHH-----------------hcCCCcCceEEEecCCCCcccchHHHHHH
Confidence 455667999996555443332 22223332221 12346889999999954 8999999999
Q ss_pred HcCCCEEEEECCCC---Chh-------HHHHcCCcc---cCHHHHhccCCEEEEcCCCC----cc---------cccccc
Q 006864 249 KGLGMNVIAHDPYA---PAD-------KARAVGVEL---VSFDQALATADFISLHMPLN----PT---------TSKIFN 302 (628)
Q Consensus 249 ~~~G~~V~~~d~~~---~~~-------~a~~~g~~~---~sl~ell~~aDvV~l~~Plt----~~---------t~~li~ 302 (628)
..||++|....|.. +.+ .+.+.|... .+++|.++.||+|..-.=.. ++ ...-++
T Consensus 203 ~~~g~~v~~~~P~~~~p~~~~~~~~~~~~~~~g~~v~~~~d~~eav~~aDvvyt~~w~s~~~~~~~~~~~~~~~~~y~v~ 282 (358)
T 4h31_A 203 AKMGMDIRLVGPQAYWPDEELVAACQAIAKQTGGKITLTENVAEGVQGCDFLYTDVWVSMGESPEAWDERVALMKPYQVN 282 (358)
T ss_dssp HHHTCEEEEESCGGGSCCHHHHHHHHHHHHHHTCEEEEESCHHHHHTTCSEEEECCSSCTTSCTTHHHHHHHHHGGGCBC
T ss_pred HhcCceEEEeCCcccCCCHHHHHHHHHHHHHcCCcceeccCHHHHhccCcEEEEEEEEEcccCchhHHHHHHHHhCcccC
Confidence 99999999998742 221 123345432 38999999999998532211 11 113467
Q ss_pred HHHHhc-CCCCcEEEEcC
Q 006864 303 DETFAK-MKKGVRIVNVA 319 (628)
Q Consensus 303 ~~~l~~-mk~gailIN~a 319 (628)
.+.+++ .||+++|.-|.
T Consensus 283 ~~~l~~~ak~~~i~mH~L 300 (358)
T 4h31_A 283 MNVLKQTGNPNVKFMHCL 300 (358)
T ss_dssp HHHHHHTTCTTCEEEECS
T ss_pred HHHHHhcCCCCcEEECCC
Confidence 788876 47889998885
|
| >3btv_A Galactose/lactose metabolism regulatory protein GAL80; eukaryotic transcription repressor, acetylation, carbohydrate metabolism; 2.10A {Saccharomyces cerevisiae} PDB: 3bts_A 3v2u_A* 3btu_A | Back alignment and structure |
|---|
Probab=95.30 E-value=0.017 Score=62.60 Aligned_cols=102 Identities=10% Similarity=0.125 Sum_probs=65.4
Q ss_pred CeEEEEec----ChhHHHHHHHHHcC--CCEEE-EECCCCCh--hHHHHcCCc----ccCHHHHhc--cCCEEEEcCCCC
Q 006864 230 KTLAVMGF----GKVGSEVARRAKGL--GMNVI-AHDPYAPA--DKARAVGVE----LVSFDQALA--TADFISLHMPLN 294 (628)
Q Consensus 230 ktiGIIGl----G~IG~~vA~~l~~~--G~~V~-~~d~~~~~--~~a~~~g~~----~~sl~ell~--~aDvV~l~~Plt 294 (628)
.+|||||+ |.||+..++.++.. ++++. ++|+.... ..++..|+. +.+++++++ +.|+|++++|-.
T Consensus 21 irvgiIG~g~~gG~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~~g~~~~~~~~~~~~ll~~~~vD~V~i~tp~~ 100 (438)
T 3btv_A 21 IRVGFVGLNAAKGWAIKTHYPAILQLSSQFQITALYSPKIETSIATIQRLKLSNATAFPTLESFASSSTIDMIVIAIQVA 100 (438)
T ss_dssp EEEEEESCCTTSSSTTTTHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTCTTCEEESSHHHHHHCSSCSEEEECSCHH
T ss_pred CEEEEEcccCCCChHHHHHHHHHHhcCCCeEEEEEEeCCHHHHHHHHHHcCCCcceeeCCHHHHhcCCCCCEEEEeCCcH
Confidence 48999999 99999999999887 67875 57876422 234455664 348999997 699999999832
Q ss_pred ccccccccHHHHhcCCCC-------cEEEEc-CCCchhcHHHHHHHHhCC
Q 006864 295 PTTSKIFNDETFAKMKKG-------VRIVNV-ARGGVIDEEALVRALDSG 336 (628)
Q Consensus 295 ~~t~~li~~~~l~~mk~g-------ailIN~-aRg~~vde~aL~~aL~~g 336 (628)
... +-..+.++.| .+++.- .--.+-+.+.|.++.++.
T Consensus 101 --~H~---~~~~~al~aG~~~~~~khVl~EKP~a~~~~e~~~l~~~a~~~ 145 (438)
T 3btv_A 101 --SHY---EVVMPLLEFSKNNPNLKYLFVEWALACSLDQAESIYKAAAER 145 (438)
T ss_dssp --HHH---HHHHHHHHHGGGCTTCCEEEEESSCCSSHHHHHHHHHHHHTT
T ss_pred --HHH---HHHHHHHHCCCCcccceeEEecCcccCCHHHHHHHHHHHHHc
Confidence 221 1122223344 355552 222344556666666554
|
| >2yfq_A Padgh, NAD-GDH, NAD-specific glutamate dehydrogenase; oxidoreductase; 2.94A {Peptoniphilus asaccharolyticus} | Back alignment and structure |
|---|
Probab=95.27 E-value=0.047 Score=59.11 Aligned_cols=95 Identities=19% Similarity=0.233 Sum_probs=58.7
Q ss_pred eeeecCCeEEEEecChhHHHHHHHHHcCCCEEEEE-CCCC-------------ChhH---H-HHcC-------CcccCHH
Q 006864 224 GVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAH-DPYA-------------PADK---A-RAVG-------VELVSFD 278 (628)
Q Consensus 224 g~~l~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~-d~~~-------------~~~~---a-~~~g-------~~~~sl~ 278 (628)
|.++.|+++.|.|+|++|+.+|+.|..+|++|++. |.+. +.+. . .+.| .+.++.+
T Consensus 207 g~~l~g~~vaVqG~GnVG~~~a~~L~~~GakvVavsD~~~~~~~G~i~d~~Gld~~~l~~~~~~~g~i~~~~~a~~i~~~ 286 (421)
T 2yfq_A 207 GIKMEDAKIAVQGFGNVGTFTVKNIERQGGKVCAIAEWDRNEGNYALYNENGIDFKELLAYKEANKTLIGFPGAERITDE 286 (421)
T ss_dssp TCCGGGSCEEEECCSHHHHHHHHHHHHTTCCEEECCBCCSSSCSBCCBCSSCCCHHHHHHHHHHHCC-------------
T ss_pred CCCccCCEEEEECcCHHHHHHHHHHHHCCCEEEEEEecCCCccceEEECCCCCCHHHHHHHHHhcCCcccCCCceEeCcc
Confidence 45789999999999999999999999999999953 4441 1111 1 1111 1233344
Q ss_pred HHhc-cCCEEEEcCCCCccccccccHHHHhcCCCCcEEEEcCCCchh
Q 006864 279 QALA-TADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVI 324 (628)
Q Consensus 279 ell~-~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~~v 324 (628)
+++. .||+++-|.+ .+.|+.+....+ ...+|+-.+-+.+-
T Consensus 287 ~~~~~~~DIliP~A~-----~n~i~~~~A~~l-~ak~VvEgAN~P~t 327 (421)
T 2yfq_A 287 EFWTKEYDIIVPAAL-----ENVITGERAKTI-NAKLVCEAANGPTT 327 (421)
T ss_dssp --------CEEECSC-----SSCSCHHHHTTC-CCSEEECCSSSCSC
T ss_pred chhcCCccEEEEcCC-----cCcCCcccHHHc-CCeEEEeCCccccC
Confidence 5544 6898888764 456778777777 35677777877764
|
| >3fhl_A Putative oxidoreductase; NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 1.93A {Bacteroides fragilis nctc 9343} | Back alignment and structure |
|---|
Probab=95.24 E-value=0.013 Score=61.80 Aligned_cols=62 Identities=15% Similarity=0.157 Sum_probs=46.8
Q ss_pred CeEEEEecChhHHH-HHHHHHcC-CCEEE-EECCCCChhHHHHc-CCc-ccCHHHHhcc--CCEEEEcCC
Q 006864 230 KTLAVMGFGKVGSE-VARRAKGL-GMNVI-AHDPYAPADKARAV-GVE-LVSFDQALAT--ADFISLHMP 292 (628)
Q Consensus 230 ktiGIIGlG~IG~~-vA~~l~~~-G~~V~-~~d~~~~~~~a~~~-g~~-~~sl~ell~~--aDvV~l~~P 292 (628)
.++||||+|.||+. .+..++.. ++++. ++|+.... .+... ++. +.++++++++ .|+|++|+|
T Consensus 6 ~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~-~~~~~~~~~~~~~~~~ll~~~~vD~V~i~tp 74 (362)
T 3fhl_A 6 IKTGLAAFGMSGQVFHAPFISTNPHFELYKIVERSKEL-SKERYPQASIVRSFKELTEDPEIDLIVVNTP 74 (362)
T ss_dssp EEEEESCCSHHHHHTTHHHHHHCTTEEEEEEECSSCCG-GGTTCTTSEEESCSHHHHTCTTCCEEEECSC
T ss_pred eEEEEECCCHHHHHHHHHHHhhCCCeEEEEEEcCCHHH-HHHhCCCCceECCHHHHhcCCCCCEEEEeCC
Confidence 47999999999997 77777766 68876 46877543 23334 444 3489999987 999999999
|
| >3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58} | Back alignment and structure |
|---|
Probab=95.23 E-value=0.029 Score=58.35 Aligned_cols=107 Identities=18% Similarity=0.151 Sum_probs=67.2
Q ss_pred CCeEEEEecChhHHH-HHHHHHcCCCEEEEECCCCCh---hHHHHcCCccc---CHHHHh-ccCCEEEEc--CCC-Cccc
Q 006864 229 GKTLAVMGFGKVGSE-VARRAKGLGMNVIAHDPYAPA---DKARAVGVELV---SFDQAL-ATADFISLH--MPL-NPTT 297 (628)
Q Consensus 229 GktiGIIGlG~IG~~-vA~~l~~~G~~V~~~d~~~~~---~~a~~~g~~~~---sl~ell-~~aDvV~l~--~Pl-t~~t 297 (628)
.|++.|||.|.+|.+ +|+.|+..|++|.++|..... +..++.|++.. +.+++. .++|+|+.. +|. +|+.
T Consensus 4 ~~~i~~iGiGg~Gms~~A~~L~~~G~~V~~~D~~~~~~~~~~L~~~gi~v~~g~~~~~l~~~~~d~vV~Spgi~~~~p~~ 83 (326)
T 3eag_A 4 MKHIHIIGIGGTFMGGLAAIAKEAGFEVSGCDAKMYPPMSTQLEALGIDVYEGFDAAQLDEFKADVYVIGNVAKRGMDVV 83 (326)
T ss_dssp CCEEEEESCCSHHHHHHHHHHHHTTCEEEEEESSCCTTHHHHHHHTTCEEEESCCGGGGGSCCCSEEEECTTCCTTCHHH
T ss_pred CcEEEEEEECHHHHHHHHHHHHhCCCEEEEEcCCCCcHHHHHHHhCCCEEECCCCHHHcCCCCCCEEEECCCcCCCCHHH
Confidence 478999999999996 999999999999999976422 23445677543 345555 579999885 332 1211
Q ss_pred c-------ccccHH-HHhc-CCCC--cEEEEcCCCchhcHHHHHHHHhC
Q 006864 298 S-------KIFNDE-TFAK-MKKG--VRIVNVARGGVIDEEALVRALDS 335 (628)
Q Consensus 298 ~-------~li~~~-~l~~-mk~g--ailIN~aRg~~vde~aL~~aL~~ 335 (628)
. .++.+- .|.. +.++ .+-|-=+.|+.--..-+...|+.
T Consensus 84 ~~a~~~gi~v~~~~e~~~~~~~~~~~~IaVTGTnGKTTTt~ll~~iL~~ 132 (326)
T 3eag_A 84 EAILNLGLPYISGPQWLSENVLHHHWVLGVAGTHGKTTTASMLAWVLEY 132 (326)
T ss_dssp HHHHHTTCCEEEHHHHHHHHTGGGSEEEEEESSSCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCcEEeHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHHH
Confidence 1 123332 2332 2222 33344456777777766677765
|
| >1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A | Back alignment and structure |
|---|
Probab=95.22 E-value=0.014 Score=58.69 Aligned_cols=104 Identities=17% Similarity=0.244 Sum_probs=65.2
Q ss_pred HHHHHcCcccccccceeeecCCeEEEEecChhHHHHHHHHHcCCC-EEEEECCCC-Ch----------------hHH---
Q 006864 209 DASIKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGM-NVIAHDPYA-PA----------------DKA--- 267 (628)
Q Consensus 209 ~~~~~~g~W~~~~~~g~~l~GktiGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~-~~----------------~~a--- 267 (628)
.++++-..|... .-..|++++|.|+|+|.+|..+|+.|...|. ++..+|+.. .. .++
T Consensus 10 ~Rq~~l~~~g~~--~q~~l~~~~VlvvG~GglG~~va~~La~~Gvg~i~lvD~d~v~~sNL~Rq~l~~~~diG~~Ka~~~ 87 (251)
T 1zud_1 10 SRQILLDDIALD--GQQKLLDSQVLIIGLGGLGTPAALYLAGAGVGTLVLADDDDVHLSNLQRQILFTTEDIDRPKSQVS 87 (251)
T ss_dssp HHHHTSTTTHHH--HHHHHHTCEEEEECCSTTHHHHHHHHHHTTCSEEEEECCCBCCGGGTTTCTTCCGGGTTSBHHHHH
T ss_pred hhhcchhhcCHH--HHHHHhcCcEEEEccCHHHHHHHHHHHHcCCCeEEEEeCCCcccccCCCCccCChhhCCCHHHHHH
Confidence 344444446431 1246899999999999999999999999996 788887642 00 011
Q ss_pred ----HHc--CCc--c----c---CHHHHhccCCEEEEcCCCCccccccccHHHHhcCCCCcEEEEc
Q 006864 268 ----RAV--GVE--L----V---SFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNV 318 (628)
Q Consensus 268 ----~~~--g~~--~----~---sl~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~ 318 (628)
.+. +++ . . +++++++++|+|+.++. +.+++.++++..... +.-+|..
T Consensus 88 ~~~l~~~np~~~v~~~~~~~~~~~~~~~~~~~DvVi~~~d-~~~~r~~l~~~~~~~---~~p~i~~ 149 (251)
T 1zud_1 88 QQRLTQLNPDIQLTALQQRLTGEALKDAVARADVVLDCTD-NMATRQEINAACVAL---NTPLITA 149 (251)
T ss_dssp HHHHHHHCTTSEEEEECSCCCHHHHHHHHHHCSEEEECCS-SHHHHHHHHHHHHHT---TCCEEEE
T ss_pred HHHHHHHCCCCEEEEEeccCCHHHHHHHHhcCCEEEECCC-CHHHHHHHHHHHHHh---CCCEEEE
Confidence 111 111 1 1 24567778888888876 556777777665542 3345554
|
| >1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A* | Back alignment and structure |
|---|
Probab=95.19 E-value=0.03 Score=57.72 Aligned_cols=111 Identities=18% Similarity=0.082 Sum_probs=70.7
Q ss_pred CeEEEEecChhHHHHHHHHHcCCC--EEEEECCCCChhH--H----H-H--c--CC--ccc-CHHHHhccCCEEEEcCCC
Q 006864 230 KTLAVMGFGKVGSEVARRAKGLGM--NVIAHDPYAPADK--A----R-A--V--GV--ELV-SFDQALATADFISLHMPL 293 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~G~--~V~~~d~~~~~~~--a----~-~--~--g~--~~~-sl~ell~~aDvV~l~~Pl 293 (628)
++|+|||.|.+|.++|..|...|. +|..||....... + . . . .. ... + .+.++.||+|+++.+.
T Consensus 1 MkI~ViGaG~vG~~la~~l~~~~~~~~v~L~D~~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d-~~a~~~aDiVViaag~ 79 (294)
T 1oju_A 1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGAD-YSLLKGSEIIVVTAGL 79 (294)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEEESC-GGGGTTCSEEEECCCC
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCeEEEEECChHHHHHHHHHHHhhhhhcCCCCEEEEeCC-HHHhCCCCEEEECCCC
Confidence 479999999999999999987777 9999998642211 1 1 1 1 11 112 5 7899999999999864
Q ss_pred Ccccccc-----c--cH-------HHHhcCCCCcEEEEcCCCchhcHHHHHHH----HhCCCeeEEE--ee
Q 006864 294 NPTTSKI-----F--ND-------ETFAKMKKGVRIVNVARGGVIDEEALVRA----LDSGVVAQAA--LD 344 (628)
Q Consensus 294 t~~t~~l-----i--~~-------~~l~~mk~gailIN~aRg~~vde~aL~~a----L~~g~i~ga~--lD 344 (628)
.. ..++ + |. +.+....|++++++++ ..+|.-..+-. +...++.|.+ ||
T Consensus 80 ~~-kpG~~R~dl~~~N~~i~~~i~~~i~~~~p~a~iivvs--NPvd~~t~~~~k~~g~p~~rviG~gt~LD 147 (294)
T 1oju_A 80 AR-KPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVT--NPMDVMTYIMWKESGKPRNEVFGMGNQLD 147 (294)
T ss_dssp CC-CSSCCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECS--SSHHHHHHHHHHHSCCCTTSEEECSHHHH
T ss_pred CC-CCCCcHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeC--CcchHHHHHHHHhcCCCHHHEeecccccH
Confidence 32 2222 1 21 2344567899999998 55554432221 1134666654 55
|
| >1cf2_P Protein (glyceraldehyde-3-phosphate dehydrogenase); oxydoreductase, oxidoreductase; HET: NAP; 2.10A {Methanothermus fervidus} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=95.18 E-value=0.011 Score=62.23 Aligned_cols=64 Identities=28% Similarity=0.353 Sum_probs=43.4
Q ss_pred eEEEEecChhHHHHHHHHHc-CCCEEEEE-CCCCCh--hHHHHc------------------CCcc-cCHHHHhccCCEE
Q 006864 231 TLAVMGFGKVGSEVARRAKG-LGMNVIAH-DPYAPA--DKARAV------------------GVEL-VSFDQALATADFI 287 (628)
Q Consensus 231 tiGIIGlG~IG~~vA~~l~~-~G~~V~~~-d~~~~~--~~a~~~------------------g~~~-~sl~ell~~aDvV 287 (628)
++||+|+|.||+.+++.|.. -++++.+. |+.... ..+... ++.. .+.++++..+|+|
T Consensus 3 kVgIiGaG~iG~~l~r~L~~~~~~elvav~d~~~~~~~~~~~~~g~~~~~~~~~~v~~~~~~~l~v~~~~~~~~~~vDvV 82 (337)
T 1cf2_P 3 AVAINGYGTVGKRVADAIAQQDDMKVIGVSKTRPDFEARMALKKGYDLYVAIPERVKLFEKAGIEVAGTVDDMLDEADIV 82 (337)
T ss_dssp EEEEECCSTTHHHHHHHHHTSSSEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHTTCCCCEEHHHHHHTCSEE
T ss_pred EEEEEeECHHHHHHHHHHHcCCCcEEEEEEcCChhHHHHhcCCcchhhccccccceeeecCCceEEcCCHHHHhcCCCEE
Confidence 79999999999999999986 56888665 443211 111111 1111 1567778899999
Q ss_pred EEcCCCC
Q 006864 288 SLHMPLN 294 (628)
Q Consensus 288 ~l~~Plt 294 (628)
+.|+|-.
T Consensus 83 ~~atp~~ 89 (337)
T 1cf2_P 83 IDCTPEG 89 (337)
T ss_dssp EECCSTT
T ss_pred EECCCch
Confidence 9999844
|
| >3dty_A Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetramer, PSI-2, 11131, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=95.18 E-value=0.017 Score=61.68 Aligned_cols=63 Identities=17% Similarity=0.201 Sum_probs=49.0
Q ss_pred CeEEEEecCh---hHHHHHHHHHcCC-CEEEE--ECCCCC--hhHHHHcCCc----ccCHHHHhcc-------CCEEEEc
Q 006864 230 KTLAVMGFGK---VGSEVARRAKGLG-MNVIA--HDPYAP--ADKARAVGVE----LVSFDQALAT-------ADFISLH 290 (628)
Q Consensus 230 ktiGIIGlG~---IG~~vA~~l~~~G-~~V~~--~d~~~~--~~~a~~~g~~----~~sl~ell~~-------aDvV~l~ 290 (628)
.+|||||+|. ||+..+..++..+ +++++ +|+... ...+++.|+. +.++++++++ .|+|+++
T Consensus 13 ~rvgiiG~G~~~~ig~~h~~~~~~~~~~~lva~v~d~~~~~a~~~a~~~g~~~~~~~~~~~~ll~~~~~~~~~vD~V~i~ 92 (398)
T 3dty_A 13 IRWAMVGGGSQSQIGYIHRCAALRDNTFVLVAGAFDIDPIRGSAFGEQLGVDSERCYADYLSMFEQEARRADGIQAVSIA 92 (398)
T ss_dssp EEEEEEECCTTCSSHHHHHHHHHGGGSEEEEEEECCSSHHHHHHHHHHTTCCGGGBCSSHHHHHHHHTTCTTCCSEEEEE
T ss_pred ceEEEEcCCccchhHHHHHHHHhhCCCeEEEEEEeCCCHHHHHHHHHHhCCCcceeeCCHHHHHhcccccCCCCCEEEEC
Confidence 5899999999 9999998887665 78764 688652 2334567773 3489999975 9999999
Q ss_pred CC
Q 006864 291 MP 292 (628)
Q Consensus 291 ~P 292 (628)
+|
T Consensus 93 tp 94 (398)
T 3dty_A 93 TP 94 (398)
T ss_dssp SC
T ss_pred CC
Confidence 99
|
| >2ozp_A N-acetyl-gamma-glutamyl-phosphate reductase; amino acid biosynthesis, structural genomics, riken structur genomics/proteomics initiative; 2.01A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=95.18 E-value=0.03 Score=59.04 Aligned_cols=85 Identities=22% Similarity=0.291 Sum_probs=53.2
Q ss_pred CeEEEEe-cChhHHHHHHHHHcCC-CEEEEECCCCChh-HHHH--------cCCcccCHHHHhccCCEEEEcCCCCcccc
Q 006864 230 KTLAVMG-FGKVGSEVARRAKGLG-MNVIAHDPYAPAD-KARA--------VGVELVSFDQALATADFISLHMPLNPTTS 298 (628)
Q Consensus 230 ktiGIIG-lG~IG~~vA~~l~~~G-~~V~~~d~~~~~~-~a~~--------~g~~~~sl~ell~~aDvV~l~~Plt~~t~ 298 (628)
.+|||+| .|.||+.+.+.|.... +++.+........ ...+ ......++++ +..+|+|++|+|.... +
T Consensus 5 ~kV~IiGAtG~iG~~llr~L~~~p~~elv~v~s~~~~g~~~~~~~~~~~g~~~~~~~~~~~-~~~vDvV~~a~g~~~s-~ 82 (345)
T 2ozp_A 5 KTLSIVGASGYAGGEFLRLALSHPYLEVKQVTSRRFAGEPVHFVHPNLRGRTNLKFVPPEK-LEPADILVLALPHGVF-A 82 (345)
T ss_dssp EEEEEETTTSHHHHHHHHHHHTCTTEEEEEEBCSTTTTSBGGGTCGGGTTTCCCBCBCGGG-CCCCSEEEECCCTTHH-H
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCcEEEEEECchhhCchhHHhCchhcCcccccccchhH-hcCCCEEEEcCCcHHH-H
Confidence 4899999 8999999999998665 5776653322111 1110 1122234444 5789999999995532 2
Q ss_pred ccccHHHHhcCCCCcEEEEcCC
Q 006864 299 KIFNDETFAKMKKGVRIVNVAR 320 (628)
Q Consensus 299 ~li~~~~l~~mk~gailIN~aR 320 (628)
... . ..++.|+.+|+.+-
T Consensus 83 ~~a--~--~~~~aG~~VId~Sa 100 (345)
T 2ozp_A 83 REF--D--RYSALAPVLVDLSA 100 (345)
T ss_dssp HTH--H--HHHTTCSEEEECSS
T ss_pred HHH--H--HHHHCCCEEEEcCc
Confidence 111 1 22477899999874
|
| >3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei} | Back alignment and structure |
|---|
Probab=95.16 E-value=0.022 Score=58.80 Aligned_cols=53 Identities=11% Similarity=0.040 Sum_probs=45.0
Q ss_pred CCcEEEEeccCCCCchhhHHhhhhcCCccccceEEeeeecCccEEEEEEeCCC
Q 006864 557 EGNLILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDEE 609 (628)
Q Consensus 557 ~~~~Llv~~~D~PGvIa~V~~iL~~~~INIa~m~v~R~~~gg~Al~~i~vD~~ 609 (628)
....|.+.-+|+||+|++|++.|+++|+||.+++-.-+...|.-.|.++++-+
T Consensus 9 ~~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~ 61 (292)
T 3lou_A 9 HQFVLTLSCPSAAGQVAAVVGLLDRHRCYVDELTVFDDDLSARFFVRCVFHAT 61 (292)
T ss_dssp CEEEEEEEEESCSCHHHHHHHHHHHTTEEEEEEEEEEETTTTEEEEEEEEEEC
T ss_pred CcEEEEEEcCCCCCHHHHHHHHHHHCCCCEEeeEEEecCCCCceEEEEEEEcc
Confidence 34567778899999999999999999999999998866667788888887654
|
| >1ys4_A Aspartate-semialdehyde dehydrogenase; oxidoreductase, asadh; HET: NAP; 2.29A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=95.15 E-value=0.018 Score=60.84 Aligned_cols=85 Identities=18% Similarity=0.138 Sum_probs=50.8
Q ss_pred CeEEEEe-cChhHHHHHHHHHcCC-CEEEEE--CCCCC-hhHHHHcC---------------CcccCHHHHhc-cCCEEE
Q 006864 230 KTLAVMG-FGKVGSEVARRAKGLG-MNVIAH--DPYAP-ADKARAVG---------------VELVSFDQALA-TADFIS 288 (628)
Q Consensus 230 ktiGIIG-lG~IG~~vA~~l~~~G-~~V~~~--d~~~~-~~~a~~~g---------------~~~~sl~ell~-~aDvV~ 288 (628)
.+|||+| +|.||+.+++.|.... ++|.+. ++... .......+ +...+++++++ .+|+|+
T Consensus 9 ~kV~IiGAtG~iG~~llr~L~~~p~~ev~~i~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvV~ 88 (354)
T 1ys4_A 9 IKVGVLGATGSVGQRFVQLLADHPMFELTALAASERSAGKKYKDACYWFQDRDIPENIKDMVVIPTDPKHEEFEDVDIVF 88 (354)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTCSSEEEEEEEECTTTTTSBHHHHSCCCCSSCCCHHHHTCBCEESCTTSGGGTTCCEEE
T ss_pred ceEEEECcCCHHHHHHHHHHhcCCCCEEEEEEcccccccccHHHhcccccccccccCceeeEEEeCCHHHHhcCCCCEEE
Confidence 4899999 9999999999998654 687665 33221 11111111 11124556556 899999
Q ss_pred EcCCCCccccccccHHHHhcCCCCcEEEEcC
Q 006864 289 LHMPLNPTTSKIFNDETFAKMKKGVRIVNVA 319 (628)
Q Consensus 289 l~~Plt~~t~~li~~~~l~~mk~gailIN~a 319 (628)
+|+|... ++.. .-..++.|+.+|+.+
T Consensus 89 ~atp~~~-~~~~----a~~~~~aG~~VId~s 114 (354)
T 1ys4_A 89 SALPSDL-AKKF----EPEFAKEGKLIFSNA 114 (354)
T ss_dssp ECCCHHH-HHHH----HHHHHHTTCEEEECC
T ss_pred ECCCchH-HHHH----HHHHHHCCCEEEECC
Confidence 9998332 1111 111235677777765
|
| >3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=95.13 E-value=0.012 Score=60.54 Aligned_cols=52 Identities=15% Similarity=0.141 Sum_probs=43.5
Q ss_pred CCcEEEEeccCCCCchhhHHhhhhcCCccccceEEeeeecCccEEEEEEeCC
Q 006864 557 EGNLILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDE 608 (628)
Q Consensus 557 ~~~~Llv~~~D~PGvIa~V~~iL~~~~INIa~m~v~R~~~gg~Al~~i~vD~ 608 (628)
....|.+.-+|+||+|++|++.|+++|+||.+++...+...|.-.|.+.++-
T Consensus 5 ~~~iLtv~g~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~ 56 (288)
T 3obi_A 5 HQYVLTLSCPDRAGIVSAVSTFLFENGQNILDAQQYNDTESGHFFMRVVFNA 56 (288)
T ss_dssp CEEEEEEEEECCTTHHHHHHHHHHHTTEEEEEEEEEEETTTTEEEEEEEEEE
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHCCCcEEeeeeeecCCCCceEEEEEEEc
Confidence 3456777889999999999999999999999999876666777788777753
|
| >1oi7_A Succinyl-COA synthetase alpha chain; SCS, ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.23A {Thermus thermophilus} SCOP: c.2.1.8 c.23.4.1 | Back alignment and structure |
|---|
Probab=95.13 E-value=0.031 Score=57.46 Aligned_cols=103 Identities=19% Similarity=0.296 Sum_probs=67.1
Q ss_pred CCeEEEEec-ChhHHHHHHHHHcCCCEEE-EECCCCChhHHHHcCCccc-CHHHHhc--cCCEEEEcCCCCccccccccH
Q 006864 229 GKTLAVMGF-GKVGSEVARRAKGLGMNVI-AHDPYAPADKARAVGVELV-SFDQALA--TADFISLHMPLNPTTSKIFND 303 (628)
Q Consensus 229 GktiGIIGl-G~IG~~vA~~l~~~G~~V~-~~d~~~~~~~a~~~g~~~~-sl~ell~--~aDvV~l~~Plt~~t~~li~~ 303 (628)
.++|+|+|. |++|+.+++.++..|++++ ..+|..... ...|+... +++++.+ .+|++++++|- +.+...+ +
T Consensus 7 ~~~VaVvGasG~~G~~~~~~l~~~g~~~v~~VnP~~~g~--~i~G~~vy~sl~el~~~~~~Dv~Ii~vp~-~~~~~~~-~ 82 (288)
T 1oi7_A 7 ETRVLVQGITGREGQFHTKQMLTYGTKIVAGVTPGKGGM--EVLGVPVYDTVKEAVAHHEVDASIIFVPA-PAAADAA-L 82 (288)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECTTCTTC--EETTEEEESSHHHHHHHSCCSEEEECCCH-HHHHHHH-H
T ss_pred CCEEEEECCCCCHHHHHHHHHHHcCCeEEEEECCCCCCc--eECCEEeeCCHHHHhhcCCCCEEEEecCH-HHHHHHH-H
Confidence 468999999 9999999999998899854 678764211 12466544 7999998 89999999982 2222222 2
Q ss_pred HHHhcCCCCcE-EEEcCCC-chhcHHHHHHHHhCCCe
Q 006864 304 ETFAKMKKGVR-IVNVARG-GVIDEEALVRALDSGVV 338 (628)
Q Consensus 304 ~~l~~mk~gai-lIN~aRg-~~vde~aL~~aL~~g~i 338 (628)
+.. +.|.- +|..+.| ...+++.+.++.++..+
T Consensus 83 ea~---~~Gi~~vVi~t~G~~~~~~~~l~~~a~~~gi 116 (288)
T 1oi7_A 83 EAA---HAGIPLIVLITEGIPTLDMVRAVEEIKALGS 116 (288)
T ss_dssp HHH---HTTCSEEEECCSCCCHHHHHHHHHHHHHHTC
T ss_pred HHH---HCCCCEEEEECCCCCHHHHHHHHHHHHHcCC
Confidence 222 23333 4555544 22345677777766444
|
| >1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=95.12 E-value=0.062 Score=56.57 Aligned_cols=87 Identities=26% Similarity=0.272 Sum_probs=60.0
Q ss_pred cCCeEEEEecChhHHHHHHHHHcCCC-EEEEECCCC-ChhHHHHcCCccc--------CHHHHhc-----cCCEEEEcCC
Q 006864 228 VGKTLAVMGFGKVGSEVARRAKGLGM-NVIAHDPYA-PADKARAVGVELV--------SFDQALA-----TADFISLHMP 292 (628)
Q Consensus 228 ~GktiGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~-~~~~a~~~g~~~~--------sl~ell~-----~aDvV~l~~P 292 (628)
.|+++.|+|.|.||...++.++.+|+ +|++.++.. ..+.++++|+..+ ++.+.+. ..|+|+-++.
T Consensus 192 ~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~~g~D~vid~~g 271 (374)
T 1cdo_A 192 PGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGATDFVNPNDHSEPISQVLSKMTNGGVDFSLECVG 271 (374)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCCEEECGGGCSSCHHHHHHHHHTSCBSEEEECSC
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhCCceEEeccccchhHHHHHHHHhCCCCCEEEECCC
Confidence 47899999999999999999999999 899998765 3455667775321 2333222 3677777665
Q ss_pred CCccccccccHHHHhcCCCC-cEEEEcC
Q 006864 293 LNPTTSKIFNDETFAKMKKG-VRIVNVA 319 (628)
Q Consensus 293 lt~~t~~li~~~~l~~mk~g-ailIN~a 319 (628)
..+ + -...++.++++ ..++.++
T Consensus 272 ~~~-~----~~~~~~~l~~~~G~iv~~G 294 (374)
T 1cdo_A 272 NVG-V----MRNALESCLKGWGVSVLVG 294 (374)
T ss_dssp CHH-H----HHHHHHTBCTTTCEEEECS
T ss_pred CHH-H----HHHHHHHhhcCCcEEEEEc
Confidence 211 1 24556667777 7777765
|
| >2czc_A Glyceraldehyde-3-phosphate dehydrogenase; glycolysis, NAD, oxidoreductase, structural genomics; HET: NAD; 2.00A {Pyrococcus horikoshii} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=95.12 E-value=0.027 Score=58.93 Aligned_cols=64 Identities=22% Similarity=0.357 Sum_probs=45.4
Q ss_pred eEEEEecChhHHHHHHHHHcC-CCEEEE-ECCCCCh--hHHHHcCCc-------------------ccCHHHHhccCCEE
Q 006864 231 TLAVMGFGKVGSEVARRAKGL-GMNVIA-HDPYAPA--DKARAVGVE-------------------LVSFDQALATADFI 287 (628)
Q Consensus 231 tiGIIGlG~IG~~vA~~l~~~-G~~V~~-~d~~~~~--~~a~~~g~~-------------------~~sl~ell~~aDvV 287 (628)
++||+|+|.||+.+++.+... ++++.+ .|+.... ..++..|+. ..++++++.++|+|
T Consensus 4 rVgIiG~G~iG~~~~r~l~~~~~~elvav~d~~~~~~~~~~~~~g~~~~~~~~~~v~~~~~~~~~v~~d~~~l~~~vDvV 83 (334)
T 2czc_A 4 KVGVNGYGTIGKRVAYAVTKQDDMELIGITKTKPDFEAYRAKELGIPVYAASEEFIPRFEKEGFEVAGTLNDLLEKVDII 83 (334)
T ss_dssp EEEEECCSHHHHHHHHHHHTCTTEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHHTCCCSCBHHHHHTTCSEE
T ss_pred EEEEEeEhHHHHHHHHHHhcCCCCEEEEEEcCCHHHHHHHHHhcCccccccccccceeccCCceEEcCcHHHhccCCCEE
Confidence 799999999999999999865 577765 4554321 122333321 12688888899999
Q ss_pred EEcCCCC
Q 006864 288 SLHMPLN 294 (628)
Q Consensus 288 ~l~~Plt 294 (628)
+.|+|-.
T Consensus 84 ~~aTp~~ 90 (334)
T 2czc_A 84 VDATPGG 90 (334)
T ss_dssp EECCSTT
T ss_pred EECCCcc
Confidence 9999843
|
| >1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A* | Back alignment and structure |
|---|
Probab=95.09 E-value=0.063 Score=55.68 Aligned_cols=97 Identities=15% Similarity=0.168 Sum_probs=62.7
Q ss_pred CeEEEEec-ChhHHHHHHHHHcCC--CEEEEECCCCChhHHHHcC-------Ccc----cCHHHHhccCCEEEEcCCCCc
Q 006864 230 KTLAVMGF-GKVGSEVARRAKGLG--MNVIAHDPYAPADKARAVG-------VEL----VSFDQALATADFISLHMPLNP 295 (628)
Q Consensus 230 ktiGIIGl-G~IG~~vA~~l~~~G--~~V~~~d~~~~~~~a~~~g-------~~~----~sl~ell~~aDvV~l~~Plt~ 295 (628)
++|+|||. |.+|+.++..|...| .+|..+|.......+.++. +.. .++++.++.||+|+++.....
T Consensus 1 mKI~IiGa~G~VG~~la~~L~~~~~~~ev~L~Di~~~~~~a~dL~~~~~~~~l~~~~~t~d~~~a~~~aDvVvi~ag~~~ 80 (314)
T 1mld_A 1 AKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGYLGPEQLPDCLKGCDVVVIPAGVPR 80 (314)
T ss_dssp CEEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSHHHHHHHHTTSSSSCEEEEEESGGGHHHHHTTCSEEEECCSCCC
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCcEEEEEeCCccHHHHHHHhccCcCceEEEecCCCCHHHHhCCCCEEEECCCcCC
Confidence 37999998 999999999998777 6899999765222222221 111 257888999999999986432
Q ss_pred c---ccc-c--ccH-------HHHhcCCCCcEEEEcCCCchhcHHH
Q 006864 296 T---TSK-I--FND-------ETFAKMKKGVRIVNVARGGVIDEEA 328 (628)
Q Consensus 296 ~---t~~-l--i~~-------~~l~~mk~gailIN~aRg~~vde~a 328 (628)
. ++. + .|. +.+....|++++++++ ..+|.-.
T Consensus 81 ~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~s--NPv~~~~ 124 (314)
T 1mld_A 81 KPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIIS--NPVNSTI 124 (314)
T ss_dssp CTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECS--SCHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEEC--CCcchhH
Confidence 1 111 1 011 1222335888999974 5666543
|
| >1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A* | Back alignment and structure |
|---|
Probab=95.07 E-value=0.033 Score=52.38 Aligned_cols=66 Identities=17% Similarity=0.192 Sum_probs=47.4
Q ss_pred CCeEEEEec-ChhHHHHHHHHHcCCCEEEEECCCCChhHHH-HcCCcc--------cCHHHHhccCCEEEEcCCCC
Q 006864 229 GKTLAVMGF-GKVGSEVARRAKGLGMNVIAHDPYAPADKAR-AVGVEL--------VSFDQALATADFISLHMPLN 294 (628)
Q Consensus 229 GktiGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~-~~g~~~--------~sl~ell~~aDvV~l~~Plt 294 (628)
+|++.|.|. |.||+.+++.|...|.+|++.++........ ..++.. .++.++++.+|+|+.+....
T Consensus 3 ~~~ilVtGatG~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~~~ 78 (206)
T 1hdo_A 3 VKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSEGPRPAHVVVGDVLQAADVDKTVAGQDAVIVLLGTR 78 (206)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGSCSSSCCCSEEEESCTTSHHHHHHHHTTCSEEEECCCCT
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHCCCeEEEEEeChhhcccccCCceEEEEecCCCHHHHHHHHcCCCEEEECccCC
Confidence 478999997 9999999999999999999998764221100 112221 13667788899998877643
|
| >3v5n_A Oxidoreductase; structural genomics, PSI-biology, protein structure initiati nysgrc, NEW YORK structural genomics research consortium; 2.80A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=95.04 E-value=0.03 Score=60.27 Aligned_cols=65 Identities=15% Similarity=0.268 Sum_probs=48.7
Q ss_pred CeEEEEecCh---hHHHHHHHHHcCC-CEEE--EECCCCC--hhHHHHcCCc----ccCHHHHhcc-------CCEEEEc
Q 006864 230 KTLAVMGFGK---VGSEVARRAKGLG-MNVI--AHDPYAP--ADKARAVGVE----LVSFDQALAT-------ADFISLH 290 (628)
Q Consensus 230 ktiGIIGlG~---IG~~vA~~l~~~G-~~V~--~~d~~~~--~~~a~~~g~~----~~sl~ell~~-------aDvV~l~ 290 (628)
.+|||||+|. ||+..+..++..+ ++++ ++|+... ...+++.|+. +.++++++++ .|+|+++
T Consensus 38 ~rvgiiG~G~~~~ig~~h~~~~~~~~~~~lva~v~d~~~~~a~~~a~~~g~~~~~~~~~~~~ll~~~~~~~~~vD~V~I~ 117 (417)
T 3v5n_A 38 IRLGMVGGGSGAFIGAVHRIAARLDDHYELVAGALSSTPEKAEASGRELGLDPSRVYSDFKEMAIREAKLKNGIEAVAIV 117 (417)
T ss_dssp EEEEEESCC--CHHHHHHHHHHHHTSCEEEEEEECCSSHHHHHHHHHHHTCCGGGBCSCHHHHHHHHHHCTTCCSEEEEC
T ss_pred ceEEEEcCCCchHHHHHHHHHHhhCCCcEEEEEEeCCCHHHHHHHHHHcCCCcccccCCHHHHHhcccccCCCCcEEEEC
Confidence 4899999999 9999988887665 6776 4687652 2334566773 3489999986 9999999
Q ss_pred CCCC
Q 006864 291 MPLN 294 (628)
Q Consensus 291 ~Plt 294 (628)
+|-.
T Consensus 118 tp~~ 121 (417)
T 3v5n_A 118 TPNH 121 (417)
T ss_dssp SCTT
T ss_pred CCcH
Confidence 9943
|
| >1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A | Back alignment and structure |
|---|
Probab=95.03 E-value=0.025 Score=58.78 Aligned_cols=88 Identities=23% Similarity=0.361 Sum_probs=59.0
Q ss_pred cCCeEEEEecChhHHHHHHHHHcCCCEEEEECCCC-ChhHHHHcCCccc------CHHHHh----ccCCEEEEcCCCCcc
Q 006864 228 VGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA-PADKARAVGVELV------SFDQAL----ATADFISLHMPLNPT 296 (628)
Q Consensus 228 ~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~g~~~~------sl~ell----~~aDvV~l~~Plt~~ 296 (628)
.|+++.|+|.|.||..+++.++.+|++|++.++.. ..+.++++|+..+ ++.+.+ ...|+|+-++...+
T Consensus 164 ~g~~VlV~GaG~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~lGa~~~~d~~~~~~~~~~~~~~~~~d~vid~~g~~~- 242 (339)
T 1rjw_A 164 PGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKELGADLVVNPLKEDAAKFMKEKVGGVHAAVVTAVSKP- 242 (339)
T ss_dssp TTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCSEEECTTTSCHHHHHHHHHSSEEEEEESSCCHH-
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHCCCCEEecCCCccHHHHHHHHhCCCCEEEECCCCHH-
Confidence 47899999999999999999999999999999764 2344556665321 222211 34677777664211
Q ss_pred ccccccHHHHhcCCCCcEEEEcCC
Q 006864 297 TSKIFNDETFAKMKKGVRIVNVAR 320 (628)
Q Consensus 297 t~~li~~~~l~~mk~gailIN~aR 320 (628)
+ -...++.|+++..++.++.
T Consensus 243 ~----~~~~~~~l~~~G~~v~~g~ 262 (339)
T 1rjw_A 243 A----FQSAYNSIRRGGACVLVGL 262 (339)
T ss_dssp H----HHHHHHHEEEEEEEEECCC
T ss_pred H----HHHHHHHhhcCCEEEEecc
Confidence 1 2445566777777777764
|
| >2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ... | Back alignment and structure |
|---|
Probab=95.02 E-value=0.065 Score=56.36 Aligned_cols=87 Identities=28% Similarity=0.272 Sum_probs=57.6
Q ss_pred cCCeEEEEecChhHHHHHHHHHcCCC-EEEEECCCC-ChhHHHHcCCcc-cC-------HHHHhc-----cCCEEEEcCC
Q 006864 228 VGKTLAVMGFGKVGSEVARRAKGLGM-NVIAHDPYA-PADKARAVGVEL-VS-------FDQALA-----TADFISLHMP 292 (628)
Q Consensus 228 ~GktiGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~-~~~~a~~~g~~~-~s-------l~ell~-----~aDvV~l~~P 292 (628)
.|+++.|+|.|.||...++.++.+|. +|++.++.. ..+.++++|+.. ++ +.+.+. ..|+|+-++.
T Consensus 191 ~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~~g~D~vid~~g 270 (374)
T 2jhf_A 191 QGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATECVNPQDYKKPIQEVLTEMSNGGVDFSFEVIG 270 (374)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEECSC
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCceEecccccchhHHHHHHHHhCCCCcEEEECCC
Confidence 47899999999999999999999999 899998765 345566677532 11 222222 3577766654
Q ss_pred CCccccccccHHHHhcCCCC-cEEEEcC
Q 006864 293 LNPTTSKIFNDETFAKMKKG-VRIVNVA 319 (628)
Q Consensus 293 lt~~t~~li~~~~l~~mk~g-ailIN~a 319 (628)
.. ++ -...++.++++ ..++.++
T Consensus 271 ~~-~~----~~~~~~~l~~~~G~iv~~G 293 (374)
T 2jhf_A 271 RL-DT----MVTALSCCQEAYGVSVIVG 293 (374)
T ss_dssp CH-HH----HHHHHHHBCTTTCEEEECS
T ss_pred CH-HH----HHHHHHHhhcCCcEEEEec
Confidence 21 11 13445566666 6666665
|
| >1zh8_A Oxidoreductase; TM0312, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI; HET: MSE NAP; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.5 | Back alignment and structure |
|---|
Probab=94.98 E-value=0.025 Score=59.01 Aligned_cols=63 Identities=21% Similarity=0.310 Sum_probs=48.0
Q ss_pred CeEEEEecC-hhHHHHHHHHHcC--CCEEE-EECCCCCh--hHHHHcCC-c-ccCHHHHhc--cCCEEEEcCC
Q 006864 230 KTLAVMGFG-KVGSEVARRAKGL--GMNVI-AHDPYAPA--DKARAVGV-E-LVSFDQALA--TADFISLHMP 292 (628)
Q Consensus 230 ktiGIIGlG-~IG~~vA~~l~~~--G~~V~-~~d~~~~~--~~a~~~g~-~-~~sl~ell~--~aDvV~l~~P 292 (628)
.++||||+| .+|+..+..++.. ++++. ++|+.... ..++..++ . +.+++++++ +.|+|++++|
T Consensus 19 irvgiIG~G~~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~~~~~~~~~~~~~ll~~~~vD~V~i~tp 91 (340)
T 1zh8_A 19 IRLGIVGCGIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAKMVGNPAVFDSYEELLESGLVDAVDLTLP 91 (340)
T ss_dssp EEEEEECCSHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHHHHHHHHSSCEEESCHHHHHHSSCCSEEEECCC
T ss_pred eeEEEEecCHHHHHHHHHHHHhCCCceEEEEEEcCCHHHHHHHHHHhCCCcccCCHHHHhcCCCCCEEEEeCC
Confidence 479999999 8999999999876 57775 57876422 23345565 3 348999996 5899999998
|
| >3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1 | Back alignment and structure |
|---|
Probab=94.97 E-value=0.0083 Score=62.98 Aligned_cols=92 Identities=12% Similarity=0.045 Sum_probs=60.5
Q ss_pred cCCeEEEEecChhHHHHHHHHHcCCC--EEEEECCCCChhHH------HHcC------Ccc-cCHHHHhccCCEEEEcCC
Q 006864 228 VGKTLAVMGFGKVGSEVARRAKGLGM--NVIAHDPYAPADKA------RAVG------VEL-VSFDQALATADFISLHMP 292 (628)
Q Consensus 228 ~GktiGIIGlG~IG~~vA~~l~~~G~--~V~~~d~~~~~~~a------~~~g------~~~-~sl~ell~~aDvV~l~~P 292 (628)
..++|+|||.|.||..+|..+...|+ +|..+|........ .... +.. .++++ +++||+|+++..
T Consensus 20 ~~~kV~ViGaG~vG~~~a~~la~~g~~~ev~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~~t~d~~~-~~daDiVIitaG 98 (330)
T 3ldh_A 20 SYNKITVVGCDAVGMADAISVLMKDLADEVALVDVMEDKLKGEMMDLEHGSLFLHTAKIVSGKDYSV-SAGSKLVVITAG 98 (330)
T ss_dssp CCCEEEEESTTHHHHHHHHHHHHHCCCSEEEEECSCHHHHHHHHHHHHHHGGGSCCSEEEEESSSCS-CSSCSEEEECCS
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhhhhcccCCeEEEcCCHHH-hCCCCEEEEeCC
Confidence 56899999999999999999987776 99999985421111 1000 111 15655 899999999865
Q ss_pred CCc---ccc-ccc--cH-------HHHhcCCCCcEEEEcCC
Q 006864 293 LNP---TTS-KIF--ND-------ETFAKMKKGVRIVNVAR 320 (628)
Q Consensus 293 lt~---~t~-~li--~~-------~~l~~mk~gailIN~aR 320 (628)
... +++ .++ |. +.+....|++++++++-
T Consensus 99 ~p~kpG~tR~dll~~N~~I~k~i~~~I~k~~P~a~ilvvtN 139 (330)
T 3ldh_A 99 ARQQEGESRLNLVQRNVNIFKFIIPNIVKHSPDCLKELHPE 139 (330)
T ss_dssp CCCCSSCCTTGGGHHHHHHHHHHHHHHHHHCTTCEEEECSS
T ss_pred CCCCCCCCHHHHHHhhHHHHHHHHHHHHhhCCCceEEeCCC
Confidence 322 122 122 11 23444588999999974
|
| >1v9l_A Glutamate dehydrogenase; protein-NAD complex, oxidoreductase; HET: NAD; 2.80A {Pyrobaculum islandicum} SCOP: c.2.1.7 c.58.1.1 | Back alignment and structure |
|---|
Probab=94.96 E-value=0.099 Score=56.52 Aligned_cols=107 Identities=25% Similarity=0.267 Sum_probs=66.0
Q ss_pred eeeecCCeEEEEecChhHHHHHHHHHcCCCEEEE-EC-------CCC-ChhHHHHcC----C------------ccc-CH
Q 006864 224 GVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIA-HD-------PYA-PADKARAVG----V------------ELV-SF 277 (628)
Q Consensus 224 g~~l~GktiGIIGlG~IG~~vA~~l~~~G~~V~~-~d-------~~~-~~~~a~~~g----~------------~~~-sl 277 (628)
|.++.|+++.|.|+|++|+.+|+.|..+|++|++ .| |.- +.+...+.. . +.+ +-
T Consensus 205 g~~l~gk~vaVqG~GnVG~~aa~~L~e~GakVVavsD~~G~i~dp~GlD~~~l~~~k~~~g~~~v~~y~~~~~~~~~~~~ 284 (421)
T 1v9l_A 205 WGGIEGKTVAIQGMGNVGRWTAYWLEKMGAKVIAVSDINGVAYRKEGLNVELIQKNKGLTGPALVELFTTKDNAEFVKNP 284 (421)
T ss_dssp HSCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEEECSSCEEECTTCCCTHHHHHTTTSCHHHHHHHHHHTSCCCCCSST
T ss_pred CCCcCCCEEEEECcCHHHHHHHHHHHHCCCEEEEEECCCcEEECCCCCCHHHHHHHHHhhCCccccccccccCceEeCCc
Confidence 5579999999999999999999999999999984 34 331 222111111 0 222 33
Q ss_pred HHHhc-cCCEEEEcCCCCccccccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhCCCe
Q 006864 278 DQALA-TADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVV 338 (628)
Q Consensus 278 ~ell~-~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~~vde~aL~~aL~~g~i 338 (628)
++++. .||+++-|. +.+.|+.+....++ -.+|+--|-+.+ ..++- +.|.+..|
T Consensus 285 ~~~~~~~~Dil~P~A-----~~~~I~~~~a~~l~-ak~V~EgAN~p~-t~~a~-~~l~~~Gi 338 (421)
T 1v9l_A 285 DAIFKLDVDIFVPAA-----IENVIRGDNAGLVK-ARLVVEGANGPT-TPEAE-RILYERGV 338 (421)
T ss_dssp TGGGGCCCSEEEECS-----CSSCBCTTTTTTCC-CSEEECCSSSCB-CHHHH-HHHHTTTC
T ss_pred hhhhcCCccEEEecC-----cCCccchhhHHHcC-ceEEEecCCCcC-CHHHH-HHHHHCCC
Confidence 45554 688887766 24455555555553 346666666665 34443 34444433
|
| >2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A | Back alignment and structure |
|---|
Probab=94.94 E-value=0.02 Score=59.35 Aligned_cols=111 Identities=17% Similarity=0.107 Sum_probs=66.1
Q ss_pred CeEEEEecChhHHHHHHHHHcCC--CEEEEECCCCChhH--HHHc--------CCcc-cCHHHHhccCCEEEEcCCCCcc
Q 006864 230 KTLAVMGFGKVGSEVARRAKGLG--MNVIAHDPYAPADK--ARAV--------GVEL-VSFDQALATADFISLHMPLNPT 296 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~G--~~V~~~d~~~~~~~--a~~~--------g~~~-~sl~ell~~aDvV~l~~Plt~~ 296 (628)
++|+|||.|.+|.+++..+...+ -++..+|....... +.++ .+.. .+-.+.++.||+|+++.+....
T Consensus 1 ~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di~~~k~~g~a~dl~~~~~~~~~~~v~~~~~~a~~~aD~Vii~ag~~~~ 80 (310)
T 2xxj_A 1 MKVGIVGSGMVGSATAYALALLGVAREVVLVDLDRKLAQAHAEDILHATPFAHPVWVWAGSYGDLEGARAVVLAAGVAQR 80 (310)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHTTGGGSCCCEEEECCGGGGTTEEEEEECCCCCCC
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHHHHHhHhhcCCeEEEECCHHHhCCCCEEEECCCCCCC
Confidence 48999999999999999998666 58999998632111 1111 1111 1336779999999999875432
Q ss_pred cccc-------ccH-------HHHhcCCCCcEEEEcCCCchhcHHHHHHH--HhCCCeeEE
Q 006864 297 TSKI-------FND-------ETFAKMKKGVRIVNVARGGVIDEEALVRA--LDSGVVAQA 341 (628)
Q Consensus 297 t~~l-------i~~-------~~l~~mk~gailIN~aRg~~vde~aL~~a--L~~g~i~ga 341 (628)
.++ .|. +.+....|.+++++++-.-=+....+.+. +...++.|.
T Consensus 81 -~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tNPv~~~t~~~~k~s~~p~~rviG~ 140 (310)
T 2xxj_A 81 -PGETRLQLLDRNAQVFAQVVPRVLEAAPEAVLLVATNPVDVMTQVAYALSGLPPGRVVGS 140 (310)
T ss_dssp -TTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECSSSHHHHHHHHHHHHTCCGGGEEEC
T ss_pred -CCcCHHHHHHhhHHHHHHHHHHHHHHCCCcEEEEecCchHHHHHHHHHHcCCCHHHEEec
Confidence 222 111 12233478899999853222233333333 333355554
|
| >4ew6_A D-galactose-1-dehydrogenase protein; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium, two domain; 2.30A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=94.91 E-value=0.03 Score=58.34 Aligned_cols=59 Identities=24% Similarity=0.355 Sum_probs=46.0
Q ss_pred CCeEEEEecChhHH-HHHHHHHcC-CCEEEE-ECCCCChhHHHHcCCc-ccCHHHHhcc---CCEEEEcCC
Q 006864 229 GKTLAVMGFGKVGS-EVARRAKGL-GMNVIA-HDPYAPADKARAVGVE-LVSFDQALAT---ADFISLHMP 292 (628)
Q Consensus 229 GktiGIIGlG~IG~-~vA~~l~~~-G~~V~~-~d~~~~~~~a~~~g~~-~~sl~ell~~---aDvV~l~~P 292 (628)
-.++||||+|.||+ ..++.++.. +++|.+ +|+... ..|+. +.++++++++ .|+|++++|
T Consensus 25 ~~rvgiiG~G~ig~~~~~~~l~~~~~~~lvav~d~~~~-----~~g~~~~~~~~~ll~~~~~vD~V~i~tp 90 (330)
T 4ew6_A 25 PINLAIVGVGKIVRDQHLPSIAKNANFKLVATASRHGT-----VEGVNSYTTIEAMLDAEPSIDAVSLCMP 90 (330)
T ss_dssp CEEEEEECCSHHHHHTHHHHHHHCTTEEEEEEECSSCC-----CTTSEEESSHHHHHHHCTTCCEEEECSC
T ss_pred CceEEEEecCHHHHHHHHHHHHhCCCeEEEEEEeCChh-----hcCCCccCCHHHHHhCCCCCCEEEEeCC
Confidence 35899999999999 688888876 678765 677642 13554 3489999876 999999998
|
| >4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A | Back alignment and structure |
|---|
Probab=94.91 E-value=0.033 Score=60.11 Aligned_cols=64 Identities=19% Similarity=0.270 Sum_probs=47.2
Q ss_pred eecCCeEEEEecChhHHHHHHHHHcCCCEEEEECCCCChhHHHHcC----Cccc---CHHHHhccCCEEEE
Q 006864 226 SLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVG----VELV---SFDQALATADFISL 289 (628)
Q Consensus 226 ~l~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g----~~~~---sl~ell~~aDvV~l 289 (628)
-+.||+|+|+|-|.+|+.+++.++.+|++|+++|++.......-.. ..+. .+.++++++|+|+.
T Consensus 32 ~~~~~~IlIlG~G~lg~~~~~aa~~lG~~v~v~d~~~~~p~~~~ad~~~~~~~~d~~~l~~~a~~~D~V~~ 102 (419)
T 4e4t_A 32 ILPGAWLGMVGGGQLGRMFCFAAQSMGYRVAVLDPDPASPAGAVADRHLRAAYDDEAALAELAGLCEAVST 102 (419)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCTTCHHHHHSSEEECCCTTCHHHHHHHHHHCSEEEE
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCcCchhhhCCEEEECCcCCHHHHHHHHhcCCEEEE
Confidence 4679999999999999999999999999999999875322111111 1111 25667788999973
|
| >3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.79A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=94.91 E-value=0.035 Score=58.52 Aligned_cols=64 Identities=9% Similarity=0.080 Sum_probs=47.6
Q ss_pred CCeEEEEecChhHH-HHHHHHHcCCCEEEE-ECCCCCh--hHHHHcCC-c-ccCHHHHhcc--CCEEEEcCC
Q 006864 229 GKTLAVMGFGKVGS-EVARRAKGLGMNVIA-HDPYAPA--DKARAVGV-E-LVSFDQALAT--ADFISLHMP 292 (628)
Q Consensus 229 GktiGIIGlG~IG~-~vA~~l~~~G~~V~~-~d~~~~~--~~a~~~g~-~-~~sl~ell~~--aDvV~l~~P 292 (628)
-.+|||||+|.+|. .++..++.-++++.+ +|+.... ..+++.+. . +.++++++++ .|+|++++|
T Consensus 26 ~irvgiiG~G~~~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~vD~V~I~tp 97 (361)
T 3u3x_A 26 ELRFAAVGLNHNHIYGQVNCLLRAGARLAGFHEKDDALAAEFSAVYADARRIATAEEILEDENIGLIVSAAV 97 (361)
T ss_dssp CCEEEEECCCSTTHHHHHHHHHHTTCEEEEEECSCHHHHHHHHHHSSSCCEESCHHHHHTCTTCCEEEECCC
T ss_pred CcEEEEECcCHHHHHHHHHHhhcCCcEEEEEEcCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEeCC
Confidence 35899999999995 567777777899764 6876422 23445553 3 3589999985 899999998
|
| >2dt5_A AT-rich DNA-binding protein; REX, NADH, NAD, rossmann fold, redox sensing, winged helix, themophilus; HET: NAD; 2.16A {Thermus thermophilus} SCOP: a.4.5.38 c.2.1.12 PDB: 1xcb_A* 3ikt_A* 3ikv_A 3il2_A* | Back alignment and structure |
|---|
Probab=94.88 E-value=0.012 Score=57.80 Aligned_cols=63 Identities=17% Similarity=0.211 Sum_probs=43.3
Q ss_pred CeEEEEecChhHHHHHHH--HHcCCCEEEEE-CCCCChhHHHHcCCc---ccCHHHHhc-cCCEEEEcCCC
Q 006864 230 KTLAVMGFGKVGSEVARR--AKGLGMNVIAH-DPYAPADKARAVGVE---LVSFDQALA-TADFISLHMPL 293 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~--l~~~G~~V~~~-d~~~~~~~a~~~g~~---~~sl~ell~-~aDvV~l~~Pl 293 (628)
++++|||.|.+|+.+++. ... |+++.++ |...........|+. ..+++++++ +.|.|++++|.
T Consensus 81 ~rV~IIGaG~~G~~la~~~~~~~-g~~iVg~~D~dp~k~g~~i~gv~V~~~~dl~ell~~~ID~ViIA~Ps 150 (211)
T 2dt5_A 81 WGLCIVGMGRLGSALADYPGFGE-SFELRGFFDVDPEKVGRPVRGGVIEHVDLLPQRVPGRIEIALLTVPR 150 (211)
T ss_dssp EEEEEECCSHHHHHHHHCSCCCS-SEEEEEEEESCTTTTTCEETTEEEEEGGGHHHHSTTTCCEEEECSCH
T ss_pred CEEEEECccHHHHHHHHhHhhcC-CcEEEEEEeCCHHHHhhhhcCCeeecHHhHHHHHHcCCCEEEEeCCc
Confidence 579999999999999995 335 8887764 654322111112322 347888887 59999999993
|
| >2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A* | Back alignment and structure |
|---|
Probab=94.88 E-value=0.021 Score=59.55 Aligned_cols=45 Identities=31% Similarity=0.437 Sum_probs=37.4
Q ss_pred cCCeEEEEecChhHHHHHHHHHcCCC-EEEEECCCC-ChhHHHHcCC
Q 006864 228 VGKTLAVMGFGKVGSEVARRAKGLGM-NVIAHDPYA-PADKARAVGV 272 (628)
Q Consensus 228 ~GktiGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~-~~~~a~~~g~ 272 (628)
.|+++.|+|.|.||..+++.++.+|+ +|++.++.. ..+.++++|+
T Consensus 167 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~~Ga 213 (348)
T 2d8a_A 167 SGKSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSDFRRELAKKVGA 213 (348)
T ss_dssp TTCCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHHHTC
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCC
Confidence 68999999999999999999999999 999999864 2234455564
|
| >2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion, hydrolase; HET: NAD; 2.3A {Flavobacterium meningosepticum} PDB: 2ixb_A* | Back alignment and structure |
|---|
Probab=94.87 E-value=0.039 Score=59.85 Aligned_cols=63 Identities=16% Similarity=0.274 Sum_probs=46.8
Q ss_pred CeEEEEecChhHHHHHHHHHcC-CCEEE-EECCCCCh-hHH-H---HcC---Cc-cc----CHHHHhc--cCCEEEEcCC
Q 006864 230 KTLAVMGFGKVGSEVARRAKGL-GMNVI-AHDPYAPA-DKA-R---AVG---VE-LV----SFDQALA--TADFISLHMP 292 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~-G~~V~-~~d~~~~~-~~a-~---~~g---~~-~~----sl~ell~--~aDvV~l~~P 292 (628)
.+|||||+|.||+..++.++.. ++++. ++|+.... +.+ + +.| .. +. +++++++ +.|+|++++|
T Consensus 21 ~rvgiIG~G~~g~~h~~~l~~~~~~~lvav~d~~~~~~~~~a~~~~~~g~~~~~~~~~~~~~~~~ll~~~~vD~V~i~tp 100 (444)
T 2ixa_A 21 VRIAFIAVGLRGQTHVENMARRDDVEIVAFADPDPYMVGRAQEILKKNGKKPAKVFGNGNDDYKNMLKDKNIDAVFVSSP 100 (444)
T ss_dssp EEEEEECCSHHHHHHHHHHHTCTTEEEEEEECSCHHHHHHHHHHHHHTTCCCCEEECSSTTTHHHHTTCTTCCEEEECCC
T ss_pred ceEEEEecCHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHHHHHhcCCCCCceeccCCCCHHHHhcCCCCCEEEEcCC
Confidence 4899999999999999999875 67865 57876422 111 1 234 23 34 8999997 5899999999
|
| >1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A* | Back alignment and structure |
|---|
Probab=94.87 E-value=0.064 Score=56.43 Aligned_cols=87 Identities=21% Similarity=0.183 Sum_probs=59.7
Q ss_pred cCCeEEEEecChhHHHHHHHHHcCCC-EEEEECCCC-ChhHHHHcCCccc--------CHHHHhc-----cCCEEEEcCC
Q 006864 228 VGKTLAVMGFGKVGSEVARRAKGLGM-NVIAHDPYA-PADKARAVGVELV--------SFDQALA-----TADFISLHMP 292 (628)
Q Consensus 228 ~GktiGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~-~~~~a~~~g~~~~--------sl~ell~-----~aDvV~l~~P 292 (628)
.|.++.|+|.|.||...++.++.+|. +|++.++.. ..+.++++|+..+ ++.+.+. ..|+|+-++.
T Consensus 191 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~i~~~t~gg~Dvvid~~g 270 (373)
T 1p0f_A 191 PGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGATECLNPKDYDKPIYEVICEKTNGGVDYAVECAG 270 (373)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEECSC
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCcEEEecccccchHHHHHHHHhCCCCCEEEECCC
Confidence 47899999999999999999999999 899998765 3455677776421 1322222 3677777664
Q ss_pred CCccccccccHHHHhcCCCC-cEEEEcC
Q 006864 293 LNPTTSKIFNDETFAKMKKG-VRIVNVA 319 (628)
Q Consensus 293 lt~~t~~li~~~~l~~mk~g-ailIN~a 319 (628)
.. ++ -...++.++++ ..++.++
T Consensus 271 ~~-~~----~~~~~~~l~~~~G~iv~~G 293 (373)
T 1p0f_A 271 RI-ET----MMNALQSTYCGSGVTVVLG 293 (373)
T ss_dssp CH-HH----HHHHHHTBCTTTCEEEECC
T ss_pred CH-HH----HHHHHHHHhcCCCEEEEEc
Confidence 21 11 24456667777 7777765
|
| >1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=94.87 E-value=0.029 Score=59.26 Aligned_cols=88 Identities=24% Similarity=0.350 Sum_probs=62.5
Q ss_pred cCCeEEEEecChhHHHHHHHHHcCCCEEEEECCCC-ChhHHHHcCCccc----C---HHHHhccCCEEEEcCCCCccccc
Q 006864 228 VGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA-PADKARAVGVELV----S---FDQALATADFISLHMPLNPTTSK 299 (628)
Q Consensus 228 ~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~g~~~~----s---l~ell~~aDvV~l~~Plt~~t~~ 299 (628)
.|.++.|+|.|.||...++.++.+|++|++.++.. ..+.++++|+..+ + ++++....|+|+-++.... +
T Consensus 194 ~g~~VlV~GaG~vG~~aiqlak~~Ga~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~g~Dvvid~~g~~~-~-- 270 (369)
T 1uuf_A 194 PGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKALGADEVVNSRNADEMAAHLKSFDFILNTVAAPH-N-- 270 (369)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHTCSEEEETTCHHHHHTTTTCEEEEEECCSSCC-C--
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCcEEeccccHHHHHHhhcCCCEEEECCCCHH-H--
Confidence 47899999999999999999999999999998764 3455667776422 1 2223345788887775321 1
Q ss_pred cccHHHHhcCCCCcEEEEcCC
Q 006864 300 IFNDETFAKMKKGVRIVNVAR 320 (628)
Q Consensus 300 li~~~~l~~mk~gailIN~aR 320 (628)
-...++.|+++..++.++.
T Consensus 271 --~~~~~~~l~~~G~iv~~G~ 289 (369)
T 1uuf_A 271 --LDDFTTLLKRDGTMTLVGA 289 (369)
T ss_dssp --HHHHHTTEEEEEEEEECCC
T ss_pred --HHHHHHHhccCCEEEEecc
Confidence 2455677788888888764
|
| >1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A* | Back alignment and structure |
|---|
Probab=94.86 E-value=0.023 Score=62.07 Aligned_cols=67 Identities=16% Similarity=0.072 Sum_probs=47.7
Q ss_pred eeeecCCeEEEEecChhHHHHHHHHHcCCCEEEEECCCCChhHHHH---cCCccc--CH-HHHhccCCEEEEc
Q 006864 224 GVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARA---VGVELV--SF-DQALATADFISLH 290 (628)
Q Consensus 224 g~~l~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~---~g~~~~--sl-~ell~~aDvV~l~ 290 (628)
..++.||++.|||.|.+|...++.|...|.+|.++|+....+...- .+++.. .+ ++.+..+|+|+.+
T Consensus 7 ~~~l~~~~vlVvGgG~va~~k~~~L~~~ga~V~vi~~~~~~~~~~l~~~~~i~~~~~~~~~~~l~~~~lVi~a 79 (457)
T 1pjq_A 7 FCQLRDRDCLIVGGGDVAERKARLLLEAGARLTVNALTFIPQFTVWANEGMLTLVEGPFDETLLDSCWLAIAA 79 (457)
T ss_dssp EECCBTCEEEEECCSHHHHHHHHHHHHTTBEEEEEESSCCHHHHHHHTTTSCEEEESSCCGGGGTTCSEEEEC
T ss_pred EEECCCCEEEEECCCHHHHHHHHHHHhCcCEEEEEcCCCCHHHHHHHhcCCEEEEECCCCccccCCccEEEEc
Confidence 4578999999999999999999999999999999999765432211 123221 11 2344567776653
|
| >1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A* | Back alignment and structure |
|---|
Probab=94.85 E-value=0.08 Score=55.74 Aligned_cols=87 Identities=24% Similarity=0.202 Sum_probs=58.4
Q ss_pred cCCeEEEEecChhHHHHHHHHHcCCC-EEEEECCCC-ChhHHHHcCCccc--------CHHHHhc-----cCCEEEEcCC
Q 006864 228 VGKTLAVMGFGKVGSEVARRAKGLGM-NVIAHDPYA-PADKARAVGVELV--------SFDQALA-----TADFISLHMP 292 (628)
Q Consensus 228 ~GktiGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~-~~~~a~~~g~~~~--------sl~ell~-----~aDvV~l~~P 292 (628)
.|.++.|+|.|.||...++.++.+|. +|++.|+.. ..+.++++|+..+ ++.+.+. ..|+|+-++.
T Consensus 195 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~v~~~~~~g~Dvvid~~G 274 (376)
T 1e3i_A 195 PGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGATDCLNPRELDKPVQDVITELTAGGVDYSLDCAG 274 (376)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHHTSCBSEEEESSC
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCcEEEccccccchHHHHHHHHhCCCccEEEECCC
Confidence 47899999999999999999999999 899998765 3455667775321 1222221 3677776654
Q ss_pred CCccccccccHHHHhcCCCC-cEEEEcC
Q 006864 293 LNPTTSKIFNDETFAKMKKG-VRIVNVA 319 (628)
Q Consensus 293 lt~~t~~li~~~~l~~mk~g-ailIN~a 319 (628)
.. ++ -...++.++++ ..++.++
T Consensus 275 ~~-~~----~~~~~~~l~~~~G~iv~~G 297 (376)
T 1e3i_A 275 TA-QT----LKAAVDCTVLGWGSCTVVG 297 (376)
T ss_dssp CH-HH----HHHHHHTBCTTTCEEEECC
T ss_pred CH-HH----HHHHHHHhhcCCCEEEEEC
Confidence 21 11 13455666776 6666665
|
| >3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=94.83 E-value=0.049 Score=58.15 Aligned_cols=88 Identities=18% Similarity=0.225 Sum_probs=57.6
Q ss_pred cCCeEEEEecChhHHHHHHHHHcCCC-EEEEECCCC-ChhHHHHcCCccc------CHHH----Hhc--cCCEEEEcCCC
Q 006864 228 VGKTLAVMGFGKVGSEVARRAKGLGM-NVIAHDPYA-PADKARAVGVELV------SFDQ----ALA--TADFISLHMPL 293 (628)
Q Consensus 228 ~GktiGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~-~~~~a~~~g~~~~------sl~e----ll~--~aDvV~l~~Pl 293 (628)
.|.++.|+|.|.+|...++.++.+|. +|++.|+.. ..+.++++|+..+ ++.+ +.. ..|+|+-++..
T Consensus 213 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~i~~~t~g~g~D~vid~~g~ 292 (404)
T 3ip1_A 213 PGDNVVILGGGPIGLAAVAILKHAGASKVILSEPSEVRRNLAKELGADHVIDPTKENFVEAVLDYTNGLGAKLFLEATGV 292 (404)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHHTCSEEECTTTSCHHHHHHHHTTTCCCSEEEECSSC
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCCEEEcCCCCCHHHHHHHHhCCCCCCEEEECCCC
Confidence 58899999999999999999999999 999998765 3355667776421 2222 111 36777766652
Q ss_pred CccccccccHHHHhcC----CCCcEEEEcC
Q 006864 294 NPTTSKIFNDETFAKM----KKGVRIVNVA 319 (628)
Q Consensus 294 t~~t~~li~~~~l~~m----k~gailIN~a 319 (628)
...+ -...++.+ +++..++.++
T Consensus 293 ~~~~----~~~~~~~l~~~~~~~G~iv~~G 318 (404)
T 3ip1_A 293 PQLV----WPQIEEVIWRARGINATVAIVA 318 (404)
T ss_dssp HHHH----HHHHHHHHHHCSCCCCEEEECS
T ss_pred cHHH----HHHHHHHHHhccCCCcEEEEeC
Confidence 2111 12223334 7777777765
|
| >2bma_A Glutamate dehydrogenase (NADP+); malaria, drug design, analysis, oligomer organization, oxidoreductase; 2.7A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=94.83 E-value=0.13 Score=56.21 Aligned_cols=34 Identities=21% Similarity=0.306 Sum_probs=31.6
Q ss_pred eeeecCCeEEEEecChhHHHHHHHHHcCCCEEEE
Q 006864 224 GVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIA 257 (628)
Q Consensus 224 g~~l~GktiGIIGlG~IG~~vA~~l~~~G~~V~~ 257 (628)
|.++.|+|+.|-|+|++|+..|+.|..+|.+|++
T Consensus 247 G~~l~g~~vaVqG~GnVG~~~a~~L~~~GakvVa 280 (470)
T 2bma_A 247 NIPVEKQTAVVSGSGNVALYCVQKLLHLNVKVLT 280 (470)
T ss_dssp TCCGGGCEEEEECSSHHHHHHHHHHHHTTCEECE
T ss_pred cCCcCCCEEEEECCcHHHHHHHHHHHHCCCEEEE
Confidence 5678999999999999999999999999999984
|
| >2nqt_A N-acetyl-gamma-glutamyl-phosphate reductase; apoprotein, dimer, rossmann fold, structural genomics, PSI, protein structure initiative; 1.58A {Mycobacterium tuberculosis} PDB: 2i3a_A* 2i3g_A | Back alignment and structure |
|---|
Probab=94.83 E-value=0.033 Score=58.95 Aligned_cols=95 Identities=19% Similarity=0.173 Sum_probs=59.2
Q ss_pred CeEEEEe-cChhHHHHHHHHHcCC------CEEEEEC-CC-CChhHH---------HHcCCcccCHHHHhccCCEEEEcC
Q 006864 230 KTLAVMG-FGKVGSEVARRAKGLG------MNVIAHD-PY-APADKA---------RAVGVELVSFDQALATADFISLHM 291 (628)
Q Consensus 230 ktiGIIG-lG~IG~~vA~~l~~~G------~~V~~~d-~~-~~~~~a---------~~~g~~~~sl~ell~~aDvV~l~~ 291 (628)
++|+|+| .|.+|+.+.++|...+ .++..+. +. ...... ....+...+. +.+..+|+|++|+
T Consensus 10 ~kVaIvGATG~vG~~llr~L~~~~~~~~~~~ei~~l~s~~~agk~~~~~~~~l~~~~~~~~~~~~~-~~~~~~DvVf~al 88 (352)
T 2nqt_A 10 TKVAVAGASGYAGGEILRLLLGHPAYADGRLRIGALTAATSAGSTLGEHHPHLTPLAHRVVEPTEA-AVLGGHDAVFLAL 88 (352)
T ss_dssp EEEEEETTTSHHHHHHHHHHHTCHHHHTTSEEEEEEEESSCTTSBGGGTCTTCGGGTTCBCEECCH-HHHTTCSEEEECC
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCCCCccEEEEEEECCCcCCCchhhhcccccccceeeeccCCH-HHhcCCCEEEECC
Confidence 5899999 9999999999998766 4776653 22 111110 0111111243 3456899999999
Q ss_pred CCCccccccccHHHHhcCCCCcEEEEcCCCchhcHHHHHH
Q 006864 292 PLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVR 331 (628)
Q Consensus 292 Plt~~t~~li~~~~l~~mk~gailIN~aRg~~vde~aL~~ 331 (628)
|-.. ..+....++.|+.+|+.+..--.+..+.++
T Consensus 89 g~~~------s~~~~~~~~~G~~vIDlSa~~R~~~~~~~~ 122 (352)
T 2nqt_A 89 PHGH------SAVLAQQLSPETLIIDCGADFRLTDAAVWE 122 (352)
T ss_dssp TTSC------CHHHHHHSCTTSEEEECSSTTTCSCHHHHH
T ss_pred CCcc------hHHHHHHHhCCCEEEEECCCccCCcchhhh
Confidence 9543 344444456789999997554444334443
|
| >2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=94.81 E-value=0.05 Score=56.32 Aligned_cols=92 Identities=15% Similarity=0.224 Sum_probs=59.1
Q ss_pred eEEEEecChhHHHHHHHHHcCCC-EEEEECCCCChhHH--HH-------c--C--Ccc-cCHHHHhccCCEEEEcCCCCc
Q 006864 231 TLAVMGFGKVGSEVARRAKGLGM-NVIAHDPYAPADKA--RA-------V--G--VEL-VSFDQALATADFISLHMPLNP 295 (628)
Q Consensus 231 tiGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~~~~~a--~~-------~--g--~~~-~sl~ell~~aDvV~l~~Plt~ 295 (628)
+|+|||.|.+|..+|..+...|+ +|..+|........ .+ . . +.. .+. +.++.||+|+++.+...
T Consensus 1 KI~IiGaG~vG~~~a~~l~~~~l~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d~-~a~~~aD~Vi~~ag~~~ 79 (308)
T 2d4a_B 1 MITILGAGKVGMATAVMLMMRGYDDLLLIARTPGKPQGEALDLAHAAAELGVDIRISGSNSY-EDMRGSDIVLVTAGIGR 79 (308)
T ss_dssp CEEEECCSHHHHHHHHHHHHHTCSCEEEECSSTTHHHHHHHHHHHHHHHHTCCCCEEEESCG-GGGTTCSEEEECCSCCC
T ss_pred CEEEECcCHHHHHHHHHHHhCCCCEEEEEcCChhhHHHHHHHHHHhhhhcCCCeEEEECCCH-HHhCCCCEEEEeCCCCC
Confidence 58999999999999999876676 79999987532111 11 1 2 122 244 67999999999977543
Q ss_pred cccccc-------c----H---HHHhcCCCCcEEEEcCCCchhcH
Q 006864 296 TTSKIF-------N----D---ETFAKMKKGVRIVNVARGGVIDE 326 (628)
Q Consensus 296 ~t~~li-------~----~---~~l~~mk~gailIN~aRg~~vde 326 (628)
..++- | + +.+....|++++|+++- .+|.
T Consensus 80 -k~G~~r~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tN--Pv~~ 121 (308)
T 2d4a_B 80 -KPGMTREQLLEANANTMADLAEKIKAYAKDAIVVITTN--PVDA 121 (308)
T ss_dssp -CSSCCTHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCS--SHHH
T ss_pred -CCCCcHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCC--chHH
Confidence 22221 1 1 12333358899999853 4443
|
| >3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=94.81 E-value=0.027 Score=54.27 Aligned_cols=65 Identities=20% Similarity=0.158 Sum_probs=46.7
Q ss_pred CeEEEEe-cChhHHHHHHHHHcCCCEEEEECCCCChhHHHHcCCc-----c---cCHHHHhccCCEEEEcCCCC
Q 006864 230 KTLAVMG-FGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVE-----L---VSFDQALATADFISLHMPLN 294 (628)
Q Consensus 230 ktiGIIG-lG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~-----~---~sl~ell~~aDvV~l~~Plt 294 (628)
++|.|.| .|.||+.+++.|...|++|++.++..........+++ . .+++++++.+|+|+.+....
T Consensus 5 ~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~a~~~ 78 (227)
T 3dhn_A 5 KKIVLIGASGFVGSALLNEALNRGFEVTAVVRHPEKIKIENEHLKVKKADVSSLDEVCEVCKGADAVISAFNPG 78 (227)
T ss_dssp CEEEEETCCHHHHHHHHHHHHTTTCEEEEECSCGGGCCCCCTTEEEECCCTTCHHHHHHHHTTCSEEEECCCC-
T ss_pred CEEEEEcCCchHHHHHHHHHHHCCCEEEEEEcCcccchhccCceEEEEecCCCHHHHHHHhcCCCEEEEeCcCC
Confidence 6899998 6999999999999999999999987422111001221 1 13677889999998876543
|
| >3aoe_E Glutamate dehydrogenase; rossmann fold, NADH, oxidoreductase; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=94.80 E-value=0.26 Score=53.27 Aligned_cols=107 Identities=26% Similarity=0.374 Sum_probs=70.5
Q ss_pred eeeecCCeEEEEecChhHHHHHHHHHcCCCEEEE--------ECCCC-ChhHH----HHcC-Cc--ccCHHHHhc-cCCE
Q 006864 224 GVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIA--------HDPYA-PADKA----RAVG-VE--LVSFDQALA-TADF 286 (628)
Q Consensus 224 g~~l~GktiGIIGlG~IG~~vA~~l~~~G~~V~~--------~d~~~-~~~~a----~~~g-~~--~~sl~ell~-~aDv 286 (628)
|.++.||++.|.|+|++|+.+|+.|...|++|++ |||.- +.+.. .+.+ +. ..+-++++. .||+
T Consensus 213 g~~l~gk~vaVqG~GnVG~~~a~~L~~~GakVVavsD~~G~i~dp~Gld~~~l~~~~~~~g~v~~~~~~~~e~~~~~~DV 292 (419)
T 3aoe_E 213 GLDLRGARVVVQGLGQVGAAVALHAERLGMRVVAVATSMGGMYAPEGLDVAEVLSAYEATGSLPRLDLAPEEVFGLEAEV 292 (419)
T ss_dssp TCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEEETTEEEECTTCCCHHHHHHHHHHHSSCSCCCBCTTTGGGSSCSE
T ss_pred CCCccCCEEEEECcCHHHHHHHHHHHHCCCEEEEEEcCCCeEECCCCCCHHHHHHHHHhhCCcceeeccchhhhccCceE
Confidence 4578999999999999999999999999999983 34432 22211 1122 11 122244443 7999
Q ss_pred EEEcCCCCccccccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhCCCe
Q 006864 287 ISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVV 338 (628)
Q Consensus 287 V~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~~vde~aL~~aL~~g~i 338 (628)
++-|.. .+.|+.+.-..++ -.+|+..|-+.+- .+|- +.|.+..|
T Consensus 293 liP~A~-----~n~i~~~~A~~l~-ak~V~EgAN~p~t-~~A~-~~L~~~Gi 336 (419)
T 3aoe_E 293 LVLAAR-----EGALDGDRARQVQ-AQAVVEVANFGLN-PEAE-AYLLGKGA 336 (419)
T ss_dssp EEECSC-----TTCBCHHHHTTCC-CSEEEECSTTCBC-HHHH-HHHHHHTC
T ss_pred EEeccc-----ccccccchHhhCC-ceEEEECCCCcCC-HHHH-HHHHHCCC
Confidence 988863 4566777777774 3588888888864 4443 44444433
|
| >2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A* | Back alignment and structure |
|---|
Probab=94.79 E-value=0.067 Score=56.22 Aligned_cols=87 Identities=23% Similarity=0.240 Sum_probs=59.4
Q ss_pred cCCeEEEEecChhHHHHHHHHHcCCC-EEEEECCCC-ChhHHHHcCCccc--------CHHHHhc-----cCCEEEEcCC
Q 006864 228 VGKTLAVMGFGKVGSEVARRAKGLGM-NVIAHDPYA-PADKARAVGVELV--------SFDQALA-----TADFISLHMP 292 (628)
Q Consensus 228 ~GktiGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~-~~~~a~~~g~~~~--------sl~ell~-----~aDvV~l~~P 292 (628)
.|.++.|+|.|.||...++.++.+|+ +|++.++.. ..+.++++|+..+ ++.+.+. ..|+|+-++.
T Consensus 190 ~g~~VlV~GaG~vG~~avqla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~v~~~~~~g~D~vid~~g 269 (373)
T 2fzw_A 190 PGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATECINPQDFSKPIQEVLIEMTDGGVDYSFECIG 269 (373)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEECSC
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCceEeccccccccHHHHHHHHhCCCCCEEEECCC
Confidence 47899999999999999999999999 899998765 3455666775321 1322222 3677777665
Q ss_pred CCccccccccHHHHhcCCCC-cEEEEcC
Q 006864 293 LNPTTSKIFNDETFAKMKKG-VRIVNVA 319 (628)
Q Consensus 293 lt~~t~~li~~~~l~~mk~g-ailIN~a 319 (628)
..+ + -...++.++++ ..++.++
T Consensus 270 ~~~-~----~~~~~~~l~~~~G~iv~~G 292 (373)
T 2fzw_A 270 NVK-V----MRAALEACHKGWGVSVVVG 292 (373)
T ss_dssp CHH-H----HHHHHHTBCTTTCEEEECS
T ss_pred cHH-H----HHHHHHhhccCCcEEEEEe
Confidence 211 1 24456667777 7777765
|
| >2yfk_A Aspartate/ornithine carbamoyltransferase; transcarbamylase; 2.55A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=94.79 E-value=0.097 Score=56.46 Aligned_cols=64 Identities=28% Similarity=0.371 Sum_probs=49.8
Q ss_pred ecCCeEEEEe-----cCh---hHHHHHHHHHcCCCEEEEECCCC---ChhH-------HHHcCC--cc-cCHHHHhccCC
Q 006864 227 LVGKTLAVMG-----FGK---VGSEVARRAKGLGMNVIAHDPYA---PADK-------ARAVGV--EL-VSFDQALATAD 285 (628)
Q Consensus 227 l~GktiGIIG-----lG~---IG~~vA~~l~~~G~~V~~~d~~~---~~~~-------a~~~g~--~~-~sl~ell~~aD 285 (628)
+.|++|+|+| +|+ +..+++..+..|||+|.+..|.. .++. +++.|. .. .+++++++.||
T Consensus 186 l~Glkva~vgd~~~s~Gd~nnVa~Sli~~l~~lG~~v~l~~P~~~~~~p~~~~~a~~~a~~~G~~v~~~~d~~eav~~AD 265 (418)
T 2yfk_A 186 LKGKKVAMTWAYSPSYGKPLSVPQGIVGLMTRLGMDVVLAHPEGYEIMPEVEEVAKKNAAEFGGNFTKTNSMAEAFKDAD 265 (418)
T ss_dssp GTTCEEEEECCCCSSSCCCSHHHHHHHHHHGGGTCEEEEECCTTCCCCHHHHHHHHHHHHHHSSEEEEESCHHHHHTTCS
T ss_pred cCCCEEEEEeccccccCccchHHHHHHHHHHHcCCEEEEECCccccCCHHHHHHHHHHHHHcCCEEEEEcCHHHHhcCCC
Confidence 7899999998 454 99999999999999999998853 2221 223564 32 37999999999
Q ss_pred EEEEc
Q 006864 286 FISLH 290 (628)
Q Consensus 286 vV~l~ 290 (628)
+|..-
T Consensus 266 VVytd 270 (418)
T 2yfk_A 266 VVYPK 270 (418)
T ss_dssp EEEEC
T ss_pred EEEEc
Confidence 99984
|
| >3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=94.78 E-value=0.042 Score=56.45 Aligned_cols=53 Identities=9% Similarity=-0.001 Sum_probs=44.8
Q ss_pred CCcEEEEeccCCCCchhhHHhhhhcCCccccceEEeeeecCccEEEEEEeCCC
Q 006864 557 EGNLILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDEE 609 (628)
Q Consensus 557 ~~~~Llv~~~D~PGvIa~V~~iL~~~~INIa~m~v~R~~~gg~Al~~i~vD~~ 609 (628)
....|.+.-+|+||+|++|++.|+++|+||.+++-.-+...|.-.|.+.++-+
T Consensus 7 ~~~vLtv~c~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~ 59 (286)
T 3n0v_A 7 DTWILTADCPSMLGTVDVVTRYLFEQRCYVTEHHSFDDRQSGRFFIRVEFRQP 59 (286)
T ss_dssp CCEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTTTEEEEEEEEECC
T ss_pred CcEEEEEEeCCCCCHHHHHHHHHHHCCCCeeeeeeeccCCCCeeEEEEEEecC
Confidence 34567778899999999999999999999999998866667777888888653
|
| >3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A* | Back alignment and structure |
|---|
Probab=94.75 E-value=0.067 Score=56.27 Aligned_cols=37 Identities=19% Similarity=0.282 Sum_probs=32.7
Q ss_pred eeecCCeEEEEecChhHHHHHHHHHcCCC-EEEEECCC
Q 006864 225 VSLVGKTLAVMGFGKVGSEVARRAKGLGM-NVIAHDPY 261 (628)
Q Consensus 225 ~~l~GktiGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~ 261 (628)
..|++++|.|||.|.+|..+|+.|...|. ++..+|+.
T Consensus 30 ~kL~~~~VlIvGaGGlGs~va~~La~aGVg~ItlvD~D 67 (340)
T 3rui_A 30 DIIKNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNG 67 (340)
T ss_dssp HHHHTCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred HHHhCCEEEEECCCHHHHHHHHHHHHcCCCEEEEecCC
Confidence 46899999999999999999999999996 77888753
|
| >2we8_A Xanthine dehydrogenase; oxidoreductase; 2.30A {Mycobacterium smegmatis} PDB: 2we7_A | Back alignment and structure |
|---|
Probab=94.73 E-value=0.1 Score=55.86 Aligned_cols=87 Identities=20% Similarity=0.184 Sum_probs=65.8
Q ss_pred CCeEEEEecChhHHHHHHHHHcCCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEcCCCCccccccccHHHHhc
Q 006864 229 GKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAK 308 (628)
Q Consensus 229 GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~sl~ell~~aDvV~l~~Plt~~t~~li~~~~l~~ 308 (628)
-.++-|+|.|.+|+++++.++.+|++|.++|++.... . .+-+..+|-++...| .+.+..
T Consensus 204 ~~rL~IfGAGhva~ala~~a~~lg~~V~v~D~R~~~~--~---------~~~fp~a~~~~~~~p----------~~~~~~ 262 (386)
T 2we8_A 204 RPRMLVFGAIDFAAAVAQQGAFLGYRVTVCDARPVFA--T---------TARFPTADEVVVDWP----------HRYLAA 262 (386)
T ss_dssp CCEEEEECCSTHHHHHHHHHHHTTCEEEEEESCTTTS--C---------TTTCSSSSEEEESCH----------HHHHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEECCchhhc--c---------cccCCCceEEEeCCh----------HHHHHh
Confidence 3589999999999999999999999999999875211 0 112355665555444 122222
Q ss_pred ------CCCCcEEEEcCCCchhcHHHHHHHHhCC
Q 006864 309 ------MKKGVRIVNVARGGVIDEEALVRALDSG 336 (628)
Q Consensus 309 ------mk~gailIN~aRg~~vde~aL~~aL~~g 336 (628)
+.++..+|=..++.-.|...|..+|+.+
T Consensus 263 ~~~~~~~~~~t~vvvlTh~~~~D~~~L~~aL~~~ 296 (386)
T 2we8_A 263 QAEAGAIDARTVVCVLTHDPKFDVPLLEVALRLP 296 (386)
T ss_dssp HHHHTCCCTTCEEEECCCCHHHHHHHHHHHTTSS
T ss_pred hccccCCCCCcEEEEEECChHhHHHHHHHHhcCC
Confidence 6788899999999999999999999887
|
| >1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A | Back alignment and structure |
|---|
Probab=94.70 E-value=0.071 Score=55.76 Aligned_cols=88 Identities=23% Similarity=0.289 Sum_probs=59.7
Q ss_pred cCCeEEEEecChhHHHHHHHHHcCCC-EEEEECCCCC-hhHHHHcCCccc---C---HH----HHh----ccCCEEEEcC
Q 006864 228 VGKTLAVMGFGKVGSEVARRAKGLGM-NVIAHDPYAP-ADKARAVGVELV---S---FD----QAL----ATADFISLHM 291 (628)
Q Consensus 228 ~GktiGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~~-~~~a~~~g~~~~---s---l~----ell----~~aDvV~l~~ 291 (628)
.|.++.|+|.|.+|...++.++.+|. +|++.|+... .+.++++|+..+ + -+ ++. ...|+|+-++
T Consensus 171 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~i~~~~~~g~D~vid~~ 250 (356)
T 1pl8_A 171 LGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADLVLQISKESPQEIARKVEGQLGCKPEVTIECT 250 (356)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEEEECSSCCHHHHHHHHHHHHTSCCSEEEECS
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEEcCcccccchHHHHHHHHhCCCCCEEEECC
Confidence 47899999999999999999999999 9999987642 345667776321 1 11 111 2378887766
Q ss_pred CCCccccccccHHHHhcCCCCcEEEEcCC
Q 006864 292 PLNPTTSKIFNDETFAKMKKGVRIVNVAR 320 (628)
Q Consensus 292 Plt~~t~~li~~~~l~~mk~gailIN~aR 320 (628)
.... + -...++.++++..++.++-
T Consensus 251 g~~~-~----~~~~~~~l~~~G~iv~~G~ 274 (356)
T 1pl8_A 251 GAEA-S----IQAGIYATRSGGTLVLVGL 274 (356)
T ss_dssp CCHH-H----HHHHHHHSCTTCEEEECSC
T ss_pred CChH-H----HHHHHHHhcCCCEEEEEec
Confidence 5211 1 1345666777777777753
|
| >4h3v_A Oxidoreductase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.68A {Kribbella flavida} | Back alignment and structure |
|---|
Probab=94.70 E-value=0.019 Score=60.11 Aligned_cols=63 Identities=11% Similarity=0.208 Sum_probs=45.8
Q ss_pred CeEEEEecChhHHHHHHHHHcC--------CCEEEE-ECCCCC--hhHHHHcCCc--ccCHHHHhc--cCCEEEEcCC
Q 006864 230 KTLAVMGFGKVGSEVARRAKGL--------GMNVIA-HDPYAP--ADKARAVGVE--LVSFDQALA--TADFISLHMP 292 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~--------G~~V~~-~d~~~~--~~~a~~~g~~--~~sl~ell~--~aDvV~l~~P 292 (628)
-+|||||+|.||+.-++.++.. +.+|.+ +|+... ...+++.|+. +.+++++++ +.|+|++++|
T Consensus 7 lrvgiIG~G~ig~~h~~~~~~~~~~~~~~~~~~l~av~d~~~~~a~~~a~~~g~~~~~~d~~~ll~~~~iDaV~I~tP 84 (390)
T 4h3v_A 7 LGIGLIGYAFMGAAHSQAWRSAPRFFDLPLHPDLNVLCGRDAEAVRAAAGKLGWSTTETDWRTLLERDDVQLVDVCTP 84 (390)
T ss_dssp EEEEEECHHHHHHHHHHHHHHHHHHSCCSSEEEEEEEECSSHHHHHHHHHHHTCSEEESCHHHHTTCTTCSEEEECSC
T ss_pred CcEEEEcCCHHHHHHHHHHHhCccccccccCceEEEEEcCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEeCC
Confidence 3799999999999888777643 236554 687642 2334566764 348999996 4899999999
|
| >4ekn_B Aspartate carbamoyltransferase; atcase, aspartate transcarbamoylase, pyrimidine biosynthesis thermostability, substrate channeling; 2.50A {Methanocaldococcus jannaschii} PDB: 3e2p_A 2rgw_A | Back alignment and structure |
|---|
Probab=94.68 E-value=0.23 Score=51.40 Aligned_cols=65 Identities=17% Similarity=0.263 Sum_probs=51.6
Q ss_pred eecCCeEEEEec---ChhHHHHHHHHHcC-CCEEEEECCCC---Chh---HHHHcCCcc---cCHHHHhccCCEEEEc
Q 006864 226 SLVGKTLAVMGF---GKVGSEVARRAKGL-GMNVIAHDPYA---PAD---KARAVGVEL---VSFDQALATADFISLH 290 (628)
Q Consensus 226 ~l~GktiGIIGl---G~IG~~vA~~l~~~-G~~V~~~d~~~---~~~---~a~~~g~~~---~sl~ell~~aDvV~l~ 290 (628)
.+.|++|++||= |++..+.+..+..| |++|.+..|.. +.+ .+++.|... .++++.++.||+|..-
T Consensus 148 ~l~glkva~vGD~~~~rva~Sl~~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~d~~eav~~aDvvy~~ 225 (306)
T 4ekn_B 148 RIDGIKIAFVGDLKYGRTVHSLVYALSLFENVEMYFVSPKELRLPKDIIEDLKAKNIKFYEKESLDDLDDDIDVLYVT 225 (306)
T ss_dssp CSTTCEEEEESCTTTCHHHHHHHHHHHTSSSCEEEEECCGGGCCCHHHHHHHHHTTCCEEEESCGGGCCTTCSEEEEC
T ss_pred CcCCCEEEEEcCCCCCcHHHHHHHHHHhcCCCEEEEECCcccccCHHHHHHHHHcCCEEEEEcCHHHHhcCCCEEEeC
Confidence 378999999998 58999999999999 99999988742 222 234556543 3899999999999874
|
| >3h9e_O Glyceraldehyde-3-phosphate dehydrogenase, testis-; oxidoreductase, structural genomics, structural genomics CON SGC, glycolysis, NAD; HET: NAD; 1.72A {Homo sapiens} PDB: 3pfw_O* 2vyn_D* 2vyv_D* | Back alignment and structure |
|---|
Probab=94.67 E-value=0.035 Score=58.43 Aligned_cols=36 Identities=33% Similarity=0.683 Sum_probs=31.6
Q ss_pred CeEEEEecChhHHHHHHHHHcCCCEEEE-ECCCCChh
Q 006864 230 KTLAVMGFGKVGSEVARRAKGLGMNVIA-HDPYAPAD 265 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~G~~V~~-~d~~~~~~ 265 (628)
.++||.|||+||+.+++++..+|++|++ +||+.+.+
T Consensus 8 ~kvgInGFGRIGrlv~R~~~~~~veivainDp~~d~~ 44 (346)
T 3h9e_O 8 LTVGINGFGRIGRLVLRACMEKGVKVVAVNDPFIDPE 44 (346)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEECTTCCHH
T ss_pred eEEEEECCChHHHHHHHHHHhCCCEEEEEeCCCCChh
Confidence 4899999999999999999999999888 78876544
|
| >1bgv_A Glutamate dehydrogenase; oxidoreductase; HET: GLU; 1.90A {Clostridium symbiosum} SCOP: c.2.1.7 c.58.1.1 PDB: 1hrd_A 1k89_A 1aup_A 2yfh_A | Back alignment and structure |
|---|
Probab=94.67 E-value=0.064 Score=58.43 Aligned_cols=34 Identities=38% Similarity=0.636 Sum_probs=31.9
Q ss_pred eeeecCCeEEEEecChhHHHHHHHHHcCCCEEEE
Q 006864 224 GVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIA 257 (628)
Q Consensus 224 g~~l~GktiGIIGlG~IG~~vA~~l~~~G~~V~~ 257 (628)
|.++.|+++.|.|+|++|+.+|+.|...|.+|++
T Consensus 225 G~~l~g~~v~VqG~GnVG~~~a~~L~~~GakvVa 258 (449)
T 1bgv_A 225 NDTLVGKTVALAGFGNVAWGAAKKLAELGAKAVT 258 (449)
T ss_dssp TCCSTTCEEEECCSSHHHHHHHHHHHHHTCEEEE
T ss_pred cCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEE
Confidence 5678999999999999999999999999999986
|
| >1lc0_A Biliverdin reductase A; oxidoreductase, tetrapyrrole, bIle pigment, heme, bilirubin, NADH; 1.20A {Rattus norvegicus} SCOP: c.2.1.3 d.81.1.4 PDB: 1lc3_A* 1gcu_A 2h63_A* | Back alignment and structure |
|---|
Probab=94.66 E-value=0.021 Score=58.45 Aligned_cols=60 Identities=23% Similarity=0.246 Sum_probs=45.6
Q ss_pred CeEEEEecChhHHHHHHHHHc----CCCEEEE-ECCCCChhHHHHcCCcccCHHHHhc--cCCEEEEcCC
Q 006864 230 KTLAVMGFGKVGSEVARRAKG----LGMNVIA-HDPYAPADKARAVGVELVSFDQALA--TADFISLHMP 292 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~----~G~~V~~-~d~~~~~~~a~~~g~~~~sl~ell~--~aDvV~l~~P 292 (628)
.+|||||+|.||+..++.+.. -++++.+ +|+... +...|+...+++++++ +.|+|++++|
T Consensus 8 ~rvgiIG~G~iG~~~~~~l~~~~~~~~~~lvav~d~~~~---a~~~g~~~~~~~ell~~~~vD~V~i~tp 74 (294)
T 1lc0_A 8 FGVVVVGVGRAGSVRLRDLKDPRSAAFLNLIGFVSRREL---GSLDEVRQISLEDALRSQEIDVAYICSE 74 (294)
T ss_dssp EEEEEECCSHHHHHHHHHHTSHHHHTTEEEEEEECSSCC---CEETTEEBCCHHHHHHCSSEEEEEECSC
T ss_pred ceEEEEEEcHHHHHHHHHHhccccCCCEEEEEEECchHH---HHHcCCCCCCHHHHhcCCCCCEEEEeCC
Confidence 379999999999999988865 3577664 676431 2234555568999997 6899999998
|
| >1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1 | Back alignment and structure |
|---|
Probab=94.64 E-value=0.019 Score=54.54 Aligned_cols=35 Identities=20% Similarity=0.266 Sum_probs=31.7
Q ss_pred cCCeEEEEe-cChhHHHHHHHHHcCCCEEEEECCCC
Q 006864 228 VGKTLAVMG-FGKVGSEVARRAKGLGMNVIAHDPYA 262 (628)
Q Consensus 228 ~GktiGIIG-lG~IG~~vA~~l~~~G~~V~~~d~~~ 262 (628)
.|+++.|+| .|.||+.+++.++..|++|++.++..
T Consensus 38 ~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~ 73 (198)
T 1pqw_A 38 PGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSD 73 (198)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSH
T ss_pred CCCEEEEeeCCChHHHHHHHHHHHcCCEEEEEeCCH
Confidence 578999999 69999999999999999999998753
|
| >3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A* | Back alignment and structure |
|---|
Probab=94.64 E-value=0.02 Score=55.16 Aligned_cols=64 Identities=11% Similarity=0.123 Sum_probs=44.3
Q ss_pred CeEEEEe-cChhHHHHHHHHH-cCCCEEEEECCCCC-hhHH---HHcCCcc--------cCHHHHhccCCEEEEcCCC
Q 006864 230 KTLAVMG-FGKVGSEVARRAK-GLGMNVIAHDPYAP-ADKA---RAVGVEL--------VSFDQALATADFISLHMPL 293 (628)
Q Consensus 230 ktiGIIG-lG~IG~~vA~~l~-~~G~~V~~~d~~~~-~~~a---~~~g~~~--------~sl~ell~~aDvV~l~~Pl 293 (628)
|++.|.| .|.||+.+++.|. ..|++|++.++... .... ...++.. .+++++++.+|+|+.++..
T Consensus 6 k~vlVtGasg~iG~~~~~~l~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vv~~ag~ 83 (221)
T 3r6d_A 6 XYITILGAAGQIAQXLTATLLTYTDMHITLYGRQLKTRIPPEIIDHERVTVIEGSFQNPGXLEQAVTNAEVVFVGAME 83 (221)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHHCCCEEEEEESSHHHHSCHHHHTSTTEEEEECCTTCHHHHHHHHTTCSEEEESCCC
T ss_pred EEEEEEeCCcHHHHHHHHHHHhcCCceEEEEecCccccchhhccCCCceEEEECCCCCHHHHHHHHcCCCEEEEcCCC
Confidence 6799999 6999999999999 89999999987632 1111 1111211 1356677788888777653
|
| >3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=94.63 E-value=0.019 Score=59.50 Aligned_cols=55 Identities=18% Similarity=0.093 Sum_probs=45.2
Q ss_pred eecCCc-EEEEeccCCCCchhhHHhhhhcCCccccceEEeeeecCccEEEEEEeCC
Q 006864 554 ASLEGN-LILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDE 608 (628)
Q Consensus 554 ~~~~~~-~Llv~~~D~PGvIa~V~~iL~~~~INIa~m~v~R~~~gg~Al~~i~vD~ 608 (628)
|.|... .|.+.-+|+||+|++|++.|+++|+||.+++..-....|.-.|.++++-
T Consensus 17 ~~~~~~~iLtv~c~DrpGIVa~VS~~La~~g~NI~d~~q~~d~~~g~FfMr~~~~~ 72 (302)
T 3o1l_A 17 FQGMRTFRLVIACPDRVGIVAKVSNFLASHNGWITEASHHSDNLSGWFFMRHEIRA 72 (302)
T ss_dssp TCCCCEEEEEEEEECCTTHHHHHHHHHHHTTCCEEEEEEEEETTTTEEEEEEEEEG
T ss_pred ecccceEEEEEECCCCCCHHHHHHHHHHHCCCCEEEeeEEecCCCCeEEEEEEEec
Confidence 344443 5666779999999999999999999999999886656788888888875
|
| >4gmf_A Yersiniabactin biosynthetic protein YBTU; rossmann fold, NADPH dependent thiazoline reductase, oxidore; HET: EPE; 1.85A {Yersinia enterocolitica subsp} PDB: 4gmg_A* | Back alignment and structure |
|---|
Probab=94.61 E-value=0.023 Score=60.59 Aligned_cols=63 Identities=16% Similarity=0.218 Sum_probs=49.2
Q ss_pred CeEEEEecChhHHHHHHHHHcC--CCEEEE-ECCCCC--hhHHHHcCCcc-cCHHHHhccCCEEEEcCCC
Q 006864 230 KTLAVMGFGKVGSEVARRAKGL--GMNVIA-HDPYAP--ADKARAVGVEL-VSFDQALATADFISLHMPL 293 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~--G~~V~~-~d~~~~--~~~a~~~g~~~-~sl~ell~~aDvV~l~~Pl 293 (628)
.+|||||.| +|+.-++.++.. ++++.+ +|+... ...+++.|+.. .++++++++.|++++++|.
T Consensus 8 ~rv~VvG~G-~g~~h~~a~~~~~~~~elvav~~~~~~~a~~~a~~~gv~~~~~~~~l~~~~D~v~i~~p~ 76 (372)
T 4gmf_A 8 QRVLIVGAK-FGEMYLNAFMQPPEGLELVGLLAQGSARSRELAHAFGIPLYTSPEQITGMPDIACIVVRS 76 (372)
T ss_dssp EEEEEECST-TTHHHHHTTSSCCTTEEEEEEECCSSHHHHHHHHHTTCCEESSGGGCCSCCSEEEECCC-
T ss_pred CEEEEEehH-HHHHHHHHHHhCCCCeEEEEEECCCHHHHHHHHHHhCCCEECCHHHHhcCCCEEEEECCC
Confidence 589999999 799888877765 578775 687752 34466778864 4899999999999999983
|
| >3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A* | Back alignment and structure |
|---|
Probab=94.59 E-value=0.032 Score=57.93 Aligned_cols=87 Identities=20% Similarity=0.252 Sum_probs=57.7
Q ss_pred cCCeEEEEecChhHHHHHHHHHcCCCEEEEECCCC-ChhHHHHcCCccc------CHHHHh----ccCCEEEEcCCCCcc
Q 006864 228 VGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA-PADKARAVGVELV------SFDQAL----ATADFISLHMPLNPT 296 (628)
Q Consensus 228 ~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~g~~~~------sl~ell----~~aDvV~l~~Plt~~ 296 (628)
.|+++.|+|.|.||...++.++.+|.+|++.|+.. ..+.++++|+..+ ++.+.+ ...|+|+.++... +
T Consensus 166 ~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~~~~g~~d~vid~~g~~-~ 244 (340)
T 3s2e_A 166 PGQWVVISGIGGLGHVAVQYARAMGLRVAAVDIDDAKLNLARRLGAEVAVNARDTDPAAWLQKEIGGAHGVLVTAVSP-K 244 (340)
T ss_dssp TTSEEEEECCSTTHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHSSEEEEEESSCCH-H
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCCCEEEeCCCcCHHHHHHHhCCCCCEEEEeCCCH-H
Confidence 47899999999999999999999999999998764 3345666775321 222222 1456666655411 1
Q ss_pred ccccccHHHHhcCCCCcEEEEcC
Q 006864 297 TSKIFNDETFAKMKKGVRIVNVA 319 (628)
Q Consensus 297 t~~li~~~~l~~mk~gailIN~a 319 (628)
+ -...+..++++..++.++
T Consensus 245 ~----~~~~~~~l~~~G~iv~~G 263 (340)
T 3s2e_A 245 A----FSQAIGMVRRGGTIALNG 263 (340)
T ss_dssp H----HHHHHHHEEEEEEEEECS
T ss_pred H----HHHHHHHhccCCEEEEeC
Confidence 1 234455666777776665
|
| >4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ... | Back alignment and structure |
|---|
Probab=94.52 E-value=0.046 Score=57.32 Aligned_cols=94 Identities=13% Similarity=0.193 Sum_probs=60.8
Q ss_pred eecCCeEEEEecChhHHHHHHHHHcCCC--EEEEECCCCChhH--HHHc--C-----C-cc---cCHHHHhccCCEEEEc
Q 006864 226 SLVGKTLAVMGFGKVGSEVARRAKGLGM--NVIAHDPYAPADK--ARAV--G-----V-EL---VSFDQALATADFISLH 290 (628)
Q Consensus 226 ~l~GktiGIIGlG~IG~~vA~~l~~~G~--~V~~~d~~~~~~~--a~~~--g-----~-~~---~sl~ell~~aDvV~l~ 290 (628)
....++|+|||.|.||..+|..+...|. ++..+|....... +.++ . . .. .+.+ .++.||+|+++
T Consensus 16 ~~~~~kV~ViGaG~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~~~~d~~-~~~~aDiVvi~ 94 (331)
T 4aj2_A 16 QVPQNKITVVGVGAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQHGSLFLKTPKIVSSKDYS-VTANSKLVIIT 94 (331)
T ss_dssp -CCSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCSCCEEEECSSGG-GGTTEEEEEEC
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHhCCCCceEEEEeCChHHHHHHHHhhhhhhhccCCCeEEEcCCHH-HhCCCCEEEEc
Confidence 4567899999999999999999887776 8999998642111 1111 1 0 11 1444 58999999998
Q ss_pred CCCCc---cccc-ccc--H-------HHHhcCCCCcEEEEcCC
Q 006864 291 MPLNP---TTSK-IFN--D-------ETFAKMKKGVRIVNVAR 320 (628)
Q Consensus 291 ~Plt~---~t~~-li~--~-------~~l~~mk~gailIN~aR 320 (628)
.-... +|+. ++. . +.+....|++++++++-
T Consensus 95 aG~~~kpG~tR~dL~~~N~~I~~~i~~~i~~~~p~a~vlvvtN 137 (331)
T 4aj2_A 95 AGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSPQCKLLIVSN 137 (331)
T ss_dssp CSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECSS
T ss_pred cCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 64322 2232 221 1 23344578999999974
|
| >4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A* | Back alignment and structure |
|---|
Probab=94.52 E-value=0.04 Score=58.17 Aligned_cols=87 Identities=24% Similarity=0.261 Sum_probs=57.3
Q ss_pred cCCeEEEEecChhHHHHHHHHHcCCC-EEEEECCCC-ChhHHHHcCCccc------CHHHHhc--------cCCEEEEcC
Q 006864 228 VGKTLAVMGFGKVGSEVARRAKGLGM-NVIAHDPYA-PADKARAVGVELV------SFDQALA--------TADFISLHM 291 (628)
Q Consensus 228 ~GktiGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~-~~~~a~~~g~~~~------sl~ell~--------~aDvV~l~~ 291 (628)
.|.++.|+|.|.+|...++.++.+|+ +|++.|+.. ..+.++++|+..+ ++.+.+. ..|+|+-++
T Consensus 182 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~i~~~~~~~~gg~Dvvid~~ 261 (370)
T 4ej6_A 182 AGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATKRRLAEEVGATATVDPSAGDVVEAIAGPVGLVPGGVDVVIECA 261 (370)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHHTCSEEECTTSSCHHHHHHSTTSSSTTCEEEEEECS
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCCEEECCCCcCHHHHHHhhhhccCCCCCEEEECC
Confidence 47899999999999999999999999 899998764 3345566776421 2333332 256666655
Q ss_pred CCCccccccccHHHHhcCCCCcEEEEcC
Q 006864 292 PLNPTTSKIFNDETFAKMKKGVRIVNVA 319 (628)
Q Consensus 292 Plt~~t~~li~~~~l~~mk~gailIN~a 319 (628)
.. +++ -...+..++++..++.++
T Consensus 262 G~-~~~----~~~~~~~l~~~G~vv~~G 284 (370)
T 4ej6_A 262 GV-AET----VKQSTRLAKAGGTVVILG 284 (370)
T ss_dssp CC-HHH----HHHHHHHEEEEEEEEECS
T ss_pred CC-HHH----HHHHHHHhccCCEEEEEe
Confidence 31 111 134455566666666665
|
| >3do5_A HOM, homoserine dehydrogenase; NP_069768.1, putative homoserine dehydrogenase, structural G joint center for structural genomics, JCSG; 2.20A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=94.51 E-value=0.12 Score=54.08 Aligned_cols=107 Identities=18% Similarity=0.193 Sum_probs=67.6
Q ss_pred eEEEEecChhHHHHHHHHHc---------CCCEEEE-ECCCCC------hhH--HH--HcCCcc--cCHHHHhc--cCCE
Q 006864 231 TLAVMGFGKVGSEVARRAKG---------LGMNVIA-HDPYAP------ADK--AR--AVGVEL--VSFDQALA--TADF 286 (628)
Q Consensus 231 tiGIIGlG~IG~~vA~~l~~---------~G~~V~~-~d~~~~------~~~--a~--~~g~~~--~sl~ell~--~aDv 286 (628)
+|||||+|.||+.+++.++. .+.+|.+ +|+... ... .. ..+... .++++++. +.|+
T Consensus 4 rvgIiG~G~VG~~~~~~l~~~~~~l~~~g~~~~lvaV~d~~~~~~~~id~~~~~~~~~~~~~~~~~~d~~~ll~~~~iDv 83 (327)
T 3do5_A 4 KIAIVGFGTVGQGVAELLIRKREEIEKAIGEFKVTAVADSKSSISGDFSLVEALRMKRETGMLRDDAKAIEVVRSADYDV 83 (327)
T ss_dssp EEEEECCSHHHHHHHHHHHHTHHHHHHHHCCEEEEEEECSSCEEESSCCHHHHHHHHHHHSSCSBCCCHHHHHHHSCCSE
T ss_pred EEEEEeccHHHHHHHHHHHhhHHHHHhcCCCEEEEEEEeCChHhccccCHHHHHhhhccCccccCCCCHHHHhcCCCCCE
Confidence 79999999999999999975 4677766 466531 111 11 112222 28999986 5899
Q ss_pred EEEcCCCCccccccccHHHHhcCCCCcEEEEcCCCchh-cHHHHHHHHhCCCe
Q 006864 287 ISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVI-DEEALVRALDSGVV 338 (628)
Q Consensus 287 V~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~~v-de~aL~~aL~~g~i 338 (628)
|+.++|-...+.. .-.-....|+.|.-++-..-+.+. ..+.|.++.++...
T Consensus 84 Vv~~tp~~~h~~~-a~~~~~~aL~aGkhVv~~NKkpla~~~~eL~~~A~~~g~ 135 (327)
T 3do5_A 84 LIEASVTRVDGGE-GVNYIREALKRGKHVVTSNKGPLVAEFHGLMSLAERNGV 135 (327)
T ss_dssp EEECCCCC----C-HHHHHHHHHTTTCEEEECCSHHHHHHHHHHHHHHHHTTC
T ss_pred EEECCCCcccchh-HHHHHHHHHHCCCeEEecCchhhHHHHHHHHHHHHhhCC
Confidence 9999995432111 123345568888888877544443 56677776665543
|
| >3r3j_A Glutamate dehydrogenase; rossman fold, oxidoreductase, apicoplast; 3.10A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=94.47 E-value=0.13 Score=55.85 Aligned_cols=36 Identities=25% Similarity=0.261 Sum_probs=32.1
Q ss_pred eeeecCCeEEEEecChhHHHHHHHHHcCCCEEE-EEC
Q 006864 224 GVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVI-AHD 259 (628)
Q Consensus 224 g~~l~GktiGIIGlG~IG~~vA~~l~~~G~~V~-~~d 259 (628)
|.++.|+|+.|-|+|++|+..|+.|...|++|+ +.|
T Consensus 234 g~~l~g~~VaVQG~GnVG~~aa~~L~e~GakvVavsD 270 (456)
T 3r3j_A 234 NDNLENKKCLVSGSGNVAQYLVEKLIEKGAIVLTMSD 270 (456)
T ss_dssp TCCSTTCCEEEECCSHHHHHHHHHHHHHTCCBCCEEC
T ss_pred CCCccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEC
Confidence 457999999999999999999999999999987 444
|
| >1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1 | Back alignment and structure |
|---|
Probab=94.45 E-value=0.013 Score=59.87 Aligned_cols=40 Identities=20% Similarity=0.224 Sum_probs=36.7
Q ss_pred eeeecCCeEEEEecChhHHHHHHHHHcCCCEEEEECCCCC
Q 006864 224 GVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAP 263 (628)
Q Consensus 224 g~~l~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~ 263 (628)
..++.||++.|||.|.+|...++.|...|++|.+++|...
T Consensus 8 ~~~l~~k~VLVVGgG~va~rka~~Ll~~Ga~VtViap~~~ 47 (274)
T 1kyq_A 8 AHQLKDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPDLH 47 (274)
T ss_dssp EECCTTCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEEEC
T ss_pred EEEcCCCEEEEECCcHHHHHHHHHHHhCCCEEEEEcCCCC
Confidence 4678999999999999999999999999999999998653
|
| >1u8f_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase, liver; rossmann fold, oxidoreductase, mammalian GAPDH; HET: NAD; 1.75A {Homo sapiens} SCOP: c.2.1.3 d.81.1.1 PDB: 1znq_O* 1j0x_O* 3gpd_R* 1dss_G* 1crw_G* 1szj_G* 1ihx_A* 1ihy_A* 1gpd_G* 4gpd_1 | Back alignment and structure |
|---|
Probab=94.42 E-value=0.051 Score=57.05 Aligned_cols=87 Identities=21% Similarity=0.329 Sum_probs=53.5
Q ss_pred CeEEEEecChhHHHHHHHHHc-CCCEEEEE-CCCCChhHHH---Hc----C-------------------Ccc---cCHH
Q 006864 230 KTLAVMGFGKVGSEVARRAKG-LGMNVIAH-DPYAPADKAR---AV----G-------------------VEL---VSFD 278 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~-~G~~V~~~-d~~~~~~~a~---~~----g-------------------~~~---~sl~ 278 (628)
.+|||+|+|+||+.+++.+.. -+++|.+. |+....+... +. | +.. .+.+
T Consensus 4 ikVgI~G~G~iGr~~~R~l~~~~~vevvaI~d~~~~~~~~a~l~~~ds~~g~~~~~~~~~~~~l~v~g~~i~v~~~~d~~ 83 (335)
T 1u8f_O 4 VKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLNYMVYMFQYDSTHGKFHGTVKAENGKLVINGNPITIFQERDPS 83 (335)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCSSEEEEEECSSSCHHHHHHHHHCCTTTCSCSSCEEEETTEEEETTEEEEEECCSSGG
T ss_pred eEEEEEccCHHHHHHHHHHHcCCCcEEEEecCCCCCHHHHHHHhhcccccCCCCCceEEcCCeEEECCeEEEEEecCCHH
Confidence 489999999999999999865 46888765 5422232211 10 0 000 1455
Q ss_pred HH-h--ccCCEEEEcCCCCccccccccHHHHhcCCCCcEEEEcCCC
Q 006864 279 QA-L--ATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARG 321 (628)
Q Consensus 279 el-l--~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg 321 (628)
++ + ..+|+|+.|+|.... + +..-..++.|+..|.++-.
T Consensus 84 ~l~~~~~~vDvV~eatg~~~~-~----e~a~~~l~aGak~V~iSap 124 (335)
T 1u8f_O 84 KIKWGDAGAEYVVESTGVFTT-M----EKAGAHLQGGAKRVIISAP 124 (335)
T ss_dssp GCCTTTTTCCEEEECSSSCCS-H----HHHGGGGGGTCSEEEESSC
T ss_pred HCccccCCCCEEEECCCchhh-H----HHHHHHHhCCCeEEEeccC
Confidence 55 2 578999999984432 1 2223446778777777644
|
| >3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334} | Back alignment and structure |
|---|
Probab=94.41 E-value=0.067 Score=51.19 Aligned_cols=64 Identities=20% Similarity=0.239 Sum_probs=45.3
Q ss_pred CeEEEEec-ChhHHHHHHHHHcCCCEEEEECCCCChhHH-HHcCCccc--CHH----HHhccCCEEEEcCCC
Q 006864 230 KTLAVMGF-GKVGSEVARRAKGLGMNVIAHDPYAPADKA-RAVGVELV--SFD----QALATADFISLHMPL 293 (628)
Q Consensus 230 ktiGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~~~~~a-~~~g~~~~--sl~----ell~~aDvV~l~~Pl 293 (628)
++|.|.|. |.||+.+++.|...|++|++.++....... ...+++.+ ++. +.+..+|+|+.++..
T Consensus 1 MkilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~d~vi~~ag~ 72 (224)
T 3h2s_A 1 MKIAVLGATGRAGSAIVAEARRRGHEVLAVVRDPQKAADRLGATVATLVKEPLVLTEADLDSVDAVVDALSV 72 (224)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHTCTTSEEEECCGGGCCHHHHTTCSEEEECCCC
T ss_pred CEEEEEcCCCHHHHHHHHHHHHCCCEEEEEEecccccccccCCCceEEecccccccHhhcccCCEEEECCcc
Confidence 46889987 999999999999999999999886422111 11233322 221 677889999887765
|
| >2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A* | Back alignment and structure |
|---|
Probab=94.41 E-value=0.037 Score=57.97 Aligned_cols=88 Identities=16% Similarity=0.275 Sum_probs=61.0
Q ss_pred cCCeEEEEecChhHHHHHHHHHcCCCEEEEECCCCCh-hHHH-HcCCccc----C---HHHHhccCCEEEEcCCCCcccc
Q 006864 228 VGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPA-DKAR-AVGVELV----S---FDQALATADFISLHMPLNPTTS 298 (628)
Q Consensus 228 ~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~-~~g~~~~----s---l~ell~~aDvV~l~~Plt~~t~ 298 (628)
.|.++.|+|.|.||...++.++.+|.+|++.++.... +.++ ++|+..+ + +.++....|+|+-++.....
T Consensus 180 ~g~~VlV~GaG~vG~~a~qlak~~Ga~Vi~~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~g~D~vid~~g~~~~-- 257 (357)
T 2cf5_A 180 PGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSNKKREEALQDLGADDYVIGSDQAKMSELADSLDYVIDTVPVHHA-- 257 (357)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSTTHHHHHHTTSCCSCEEETTCHHHHHHSTTTEEEEEECCCSCCC--
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHcCCceeeccccHHHHHHhcCCCCEEEECCCChHH--
Confidence 5789999999999999999999999999999877543 3344 6675422 2 22223356888777653211
Q ss_pred ccccHHHHhcCCCCcEEEEcCC
Q 006864 299 KIFNDETFAKMKKGVRIVNVAR 320 (628)
Q Consensus 299 ~li~~~~l~~mk~gailIN~aR 320 (628)
-...++.++++..++.++-
T Consensus 258 ---~~~~~~~l~~~G~iv~~G~ 276 (357)
T 2cf5_A 258 ---LEPYLSLLKLDGKLILMGV 276 (357)
T ss_dssp ---SHHHHTTEEEEEEEEECSC
T ss_pred ---HHHHHHHhccCCEEEEeCC
Confidence 2445666778878877763
|
| >3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=94.41 E-value=0.027 Score=55.10 Aligned_cols=67 Identities=10% Similarity=0.121 Sum_probs=46.7
Q ss_pred ecCCeEEEEe-cChhHHHHHHHHHcCC-CEEEEECCCCChhHH-HHcCCc-----c---cCHHHHhccCCEEEEcCCC
Q 006864 227 LVGKTLAVMG-FGKVGSEVARRAKGLG-MNVIAHDPYAPADKA-RAVGVE-----L---VSFDQALATADFISLHMPL 293 (628)
Q Consensus 227 l~GktiGIIG-lG~IG~~vA~~l~~~G-~~V~~~d~~~~~~~a-~~~g~~-----~---~sl~ell~~aDvV~l~~Pl 293 (628)
...|++.|.| .|.||+.+++.|...| ++|+++++....... ...++. . .+++++++.+|+|+.++..
T Consensus 21 ~~mk~vlVtGatG~iG~~l~~~L~~~G~~~V~~~~R~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~D~vv~~a~~ 98 (236)
T 3qvo_A 21 GHMKNVLILGAGGQIARHVINQLADKQTIKQTLFARQPAKIHKPYPTNSQIIMGDVLNHAALKQAMQGQDIVYANLTG 98 (236)
T ss_dssp -CCEEEEEETTTSHHHHHHHHHHTTCTTEEEEEEESSGGGSCSSCCTTEEEEECCTTCHHHHHHHHTTCSEEEEECCS
T ss_pred CcccEEEEEeCCcHHHHHHHHHHHhCCCceEEEEEcChhhhcccccCCcEEEEecCCCHHHHHHHhcCCCEEEEcCCC
Confidence 4458999999 7999999999999999 899999876421110 011221 1 1366788889999877653
|
| >3q98_A Transcarbamylase; rossmann fold, transferase; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=94.38 E-value=0.49 Score=50.73 Aligned_cols=66 Identities=27% Similarity=0.360 Sum_probs=49.9
Q ss_pred eecCCeEEEEec-----C---hhHHHHHHHHHcCCCEEEEECCCC---ChhH-------HHHcCCc---ccCHHHHhccC
Q 006864 226 SLVGKTLAVMGF-----G---KVGSEVARRAKGLGMNVIAHDPYA---PADK-------ARAVGVE---LVSFDQALATA 284 (628)
Q Consensus 226 ~l~GktiGIIGl-----G---~IG~~vA~~l~~~G~~V~~~d~~~---~~~~-------a~~~g~~---~~sl~ell~~a 284 (628)
.|.|++|+|+|- | ++..+.+..+..|||+|.+..|.. .++. ++..|.. ..++++.++.|
T Consensus 188 ~l~Glkva~vgd~~~~~G~~nnVa~Sli~~~~~lG~~v~~~~P~~~~~~~~~~~~a~~~a~~~G~~i~~~~d~~eav~~a 267 (399)
T 3q98_A 188 NLKGKKIAMTWAYSPSYGKPLSVPQGIIGLMTRFGMDVTLAHPEGYDLIPDVVEVAKNNAKASGGSFRQVTSMEEAFKDA 267 (399)
T ss_dssp GGTTCEEEEECCCCSSCCCCTHHHHHHHHHHGGGTCEEEEECCTTCCCCHHHHHHHHHHHHHHTCEEEEESCHHHHHTTC
T ss_pred ccCCCEEEEEEecccccCcchHHHHHHHHHHHHcCCEEEEECCcccCCCHHHHHHHHHHHHHcCCEEEEEcCHHHHhCCC
Confidence 378999999973 4 688999999999999999988752 2221 1244643 23899999999
Q ss_pred CEEEEcC
Q 006864 285 DFISLHM 291 (628)
Q Consensus 285 DvV~l~~ 291 (628)
|+|..-+
T Consensus 268 DvVytd~ 274 (399)
T 3q98_A 268 DIVYPKS 274 (399)
T ss_dssp SEEEECC
T ss_pred CEEEecC
Confidence 9998743
|
| >1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A | Back alignment and structure |
|---|
Probab=94.37 E-value=0.069 Score=55.67 Aligned_cols=94 Identities=16% Similarity=0.156 Sum_probs=60.6
Q ss_pred CeEEEEe-cChhHHHHHHHHHcCC--CEEEEECCCCChhHHHHc---CC----cc----cCHHHHhccCCEEEEcCCCCc
Q 006864 230 KTLAVMG-FGKVGSEVARRAKGLG--MNVIAHDPYAPADKARAV---GV----EL----VSFDQALATADFISLHMPLNP 295 (628)
Q Consensus 230 ktiGIIG-lG~IG~~vA~~l~~~G--~~V~~~d~~~~~~~a~~~---g~----~~----~sl~ell~~aDvV~l~~Plt~ 295 (628)
++|+|+| .|.+|+.++..|...| .+|..+|.......+.++ .. .. .++.+.++.||+|+++.+...
T Consensus 9 mKI~ViGAaG~VG~~la~~L~~~g~~~ev~l~Di~~~~~~~~dL~~~~~~~~v~~~~~t~d~~~al~gaDvVi~~ag~~~ 88 (326)
T 1smk_A 9 FKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVNAPGVTADISHMDTGAVVRGFLGQQQLEAALTGMDLIIVPAGVPR 88 (326)
T ss_dssp EEEEEETTTSTTHHHHHHHHHHCTTEEEEEEEESSSHHHHHHHHHTSCSSCEEEEEESHHHHHHHHTTCSEEEECCCCCC
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEeCCCcHhHHHHhhcccccceEEEEeCCCCHHHHcCCCCEEEEcCCcCC
Confidence 5899999 8999999999998777 789999865432121111 11 11 146788999999999987433
Q ss_pred ccccc-------cc----H---HHHhcCCCCcEEEEcCCCchhcH
Q 006864 296 TTSKI-------FN----D---ETFAKMKKGVRIVNVARGGVIDE 326 (628)
Q Consensus 296 ~t~~l-------i~----~---~~l~~mk~gailIN~aRg~~vde 326 (628)
..++ .| + +.+....+.+++++++ ..+|.
T Consensus 89 -~~g~~r~dl~~~N~~~~~~i~~~i~~~~p~~~viv~S--NPv~~ 130 (326)
T 1smk_A 89 -KPGMTRDDLFKINAGIVKTLCEGIAKCCPRAIVNLIS--NPVNS 130 (326)
T ss_dssp -CSSCCCSHHHHHHHHHHHHHHHHHHHHCTTSEEEECC--SSHHH
T ss_pred -CCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEEC--CchHH
Confidence 1221 11 1 1222335778999974 55555
|
| >2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria} | Back alignment and structure |
|---|
Probab=94.37 E-value=0.031 Score=53.91 Aligned_cols=51 Identities=14% Similarity=0.057 Sum_probs=40.0
Q ss_pred CcEEEEeccCCCCchhhHHhhhhcCCccccceEEeeee----cCccEEEEEEeCC
Q 006864 558 GNLILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTF----RRNHGIMAIGVDE 608 (628)
Q Consensus 558 ~~~Llv~~~D~PGvIa~V~~iL~~~~INIa~m~v~R~~----~gg~Al~~i~vD~ 608 (628)
.+.|.+.-+|+||+++.|+++|+++|+||..++..... ..+.-.|.+.++-
T Consensus 93 ~~iltv~g~DrpGiva~Vt~~La~~g~nI~~~~~~t~~~~~~~~~~F~m~~~~~~ 147 (195)
T 2nyi_A 93 EYELYVEGPDSEGIVEAVTAVLAKKGANIVELETETLPAPFAGFTLFRMGSRVAF 147 (195)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEEECSSTTCEEEEEEEEEEE
T ss_pred EEEEEEEeCCCcCHHHHHHHHHHHcCCCEEEceeeecccccCCCCeEEEEEEEEc
Confidence 45666677999999999999999999999999987554 3345566666653
|
| >3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=94.34 E-value=0.042 Score=56.47 Aligned_cols=51 Identities=16% Similarity=0.163 Sum_probs=44.1
Q ss_pred cEEEEeccCCCCchhhHHhhhhcCCccccceEEeeeecCccEEEEEEeCCC
Q 006864 559 NLILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDEE 609 (628)
Q Consensus 559 ~~Llv~~~D~PGvIa~V~~iL~~~~INIa~m~v~R~~~gg~Al~~i~vD~~ 609 (628)
..|.+.-+|+||+|++|++.|+++|+||.+++...+..+|.=.|.++++-+
T Consensus 8 ~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~ 58 (287)
T 3nrb_A 8 YVLSLACQDAPGIVSEVSTFLFNNGANIVEAEQFNDEDSSKFFMRVSVEIP 58 (287)
T ss_dssp EEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTTTEEEEEEEEECC
T ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCCEEeeeeeecCCCCeEEEEEEEEcC
Confidence 466677899999999999999999999999999866677888888888754
|
| >1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A | Back alignment and structure |
|---|
Probab=94.34 E-value=0.062 Score=55.41 Aligned_cols=111 Identities=13% Similarity=0.082 Sum_probs=65.2
Q ss_pred CeEEEEe-cChhHHHHHHHHHcCCC--EEEEECC--CCChhH--HHHc--------CCccc-CHHHHhccCCEEEEcCCC
Q 006864 230 KTLAVMG-FGKVGSEVARRAKGLGM--NVIAHDP--YAPADK--ARAV--------GVELV-SFDQALATADFISLHMPL 293 (628)
Q Consensus 230 ktiGIIG-lG~IG~~vA~~l~~~G~--~V~~~d~--~~~~~~--a~~~--------g~~~~-sl~ell~~aDvV~l~~Pl 293 (628)
++|+|+| .|.+|+.++..|...|. ++..+|. ...... +.++ .+... +-.+.++.||+|+++...
T Consensus 1 mKI~IiGAaG~vG~~l~~~L~~~~~~~el~L~Di~~~~~~~~~~~~dl~~~~~~~~~~~v~~~~~~a~~~aDvVi~~ag~ 80 (303)
T 1o6z_A 1 TKVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVRQGGYEDTAGSDVVVITAGI 80 (303)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHHTTTCCCEEEECCGGGGTTCSEEEECCCC
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEcCCCChhhHHHHHHHHHHHHhhCCCcEEEeCCHHHhCCCCEEEEcCCC
Confidence 4799999 99999999999986665 7888997 421110 1111 00110 225678999999998864
Q ss_pred Cccccccc-------c----H---HHHhcCCCCcEEEEcCCCchhcHHHHHHH--HhCCCeeEE
Q 006864 294 NPTTSKIF-------N----D---ETFAKMKKGVRIVNVARGGVIDEEALVRA--LDSGVVAQA 341 (628)
Q Consensus 294 t~~t~~li-------~----~---~~l~~mk~gailIN~aRg~~vde~aL~~a--L~~g~i~ga 341 (628)
.. ..++- | + +.+....+.+++++++-.-=+....+.+. +...++.|.
T Consensus 81 ~~-~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~~~viv~SNPv~~~~~~~~~~~~~p~~rviG~ 143 (303)
T 1o6z_A 81 PR-QPGQTRIDLAGDNAPIMEDIQSSLDEHNDDYISLTTSNPVDLLNRHLYEAGDRSREQVIGF 143 (303)
T ss_dssp CC-CTTCCHHHHHHHHHHHHHHHHHHHHTTCSCCEEEECCSSHHHHHHHHHHHSSSCGGGEEEC
T ss_pred CC-CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHcCCCHHHeeec
Confidence 32 12210 1 1 22333467899999754322333444444 444467665
|
| >1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5 | Back alignment and structure |
|---|
Probab=94.32 E-value=0.038 Score=52.94 Aligned_cols=48 Identities=13% Similarity=0.149 Sum_probs=38.6
Q ss_pred cEEEEeccCCCCchhhHHhhhhcCCccccceEEeeeecCccEEEEEEeCC
Q 006864 559 NLILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDE 608 (628)
Q Consensus 559 ~~Llv~~~D~PGvIa~V~~iL~~~~INIa~m~v~R~~~gg~Al~~i~vD~ 608 (628)
..|.+.-+|+||++++|+++|+++|+||...+... .++.-.|.+.++.
T Consensus 7 ~~itv~~~DrpGiva~vt~~La~~g~NI~d~~~~~--~~~~f~~~~~v~~ 54 (192)
T 1u8s_A 7 LVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAM--FGKEFTLLMLISG 54 (192)
T ss_dssp EEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEE--ETTEEEEEEEEEE
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHCCCCEEeeeeee--cCCceEEEEEEec
Confidence 45667789999999999999999999999999886 3345555666654
|
| >1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=94.31 E-value=0.087 Score=54.93 Aligned_cols=87 Identities=16% Similarity=0.179 Sum_probs=56.2
Q ss_pred cCCeEEEEecChhHHHHHHHHHcCCCEEEEECCCC-ChhHHHHcCCccc-------C-HHHH---h-----ccCCEEEEc
Q 006864 228 VGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA-PADKARAVGVELV-------S-FDQA---L-----ATADFISLH 290 (628)
Q Consensus 228 ~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~g~~~~-------s-l~el---l-----~~aDvV~l~ 290 (628)
.|+++.|+|.|.+|...++.++.+|.+|++.++.. ..+.++++|+..+ + .+++ . ...|+|+-+
T Consensus 168 ~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~~~~~~~~~~~~~~i~~~~~~~~g~g~D~vid~ 247 (352)
T 1e3j_A 168 LGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKNCGADVTLVVDPAKEEESSIIERIRSAIGDLPNVTIDC 247 (352)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCSEEEECCTTTSCHHHHHHHHHHHSSSCCSEEEEC
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhCCCEEEcCcccccHHHHHHHHhccccCCCCCEEEEC
Confidence 47899999999999999999999999999998764 2344556665311 1 1122 1 136777666
Q ss_pred CCCCccccccccHHHHhcCCCCcEEEEcC
Q 006864 291 MPLNPTTSKIFNDETFAKMKKGVRIVNVA 319 (628)
Q Consensus 291 ~Plt~~t~~li~~~~l~~mk~gailIN~a 319 (628)
+.... + -...+..++++..++.++
T Consensus 248 ~g~~~-~----~~~~~~~l~~~G~iv~~G 271 (352)
T 1e3j_A 248 SGNEK-C----ITIGINITRTGGTLMLVG 271 (352)
T ss_dssp SCCHH-H----HHHHHHHSCTTCEEEECS
T ss_pred CCCHH-H----HHHHHHHHhcCCEEEEEe
Confidence 54211 1 134455666666666665
|
| >1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A* | Back alignment and structure |
|---|
Probab=94.27 E-value=0.065 Score=54.47 Aligned_cols=38 Identities=29% Similarity=0.307 Sum_probs=34.1
Q ss_pred eeecCCeEEEEe-cChhHHHHHHHHHcCCCEEEEECCCC
Q 006864 225 VSLVGKTLAVMG-FGKVGSEVARRAKGLGMNVIAHDPYA 262 (628)
Q Consensus 225 ~~l~GktiGIIG-lG~IG~~vA~~l~~~G~~V~~~d~~~ 262 (628)
.++.||++.|+| .|.||+++++.|...|++|+++++..
T Consensus 115 ~~l~gk~vlVtGaaGGiG~aia~~L~~~G~~V~i~~R~~ 153 (287)
T 1lu9_A 115 GSVKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKL 153 (287)
T ss_dssp SCCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred cCCCCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEECCH
Confidence 346789999999 99999999999999999999998863
|
| >3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum} | Back alignment and structure |
|---|
Probab=94.26 E-value=0.043 Score=59.82 Aligned_cols=85 Identities=25% Similarity=0.350 Sum_probs=62.0
Q ss_pred eeecCCeEEEEecC---h-------hHHHHHHHHHcCCCEEEEECCCCChhHHHHcC--Cccc-CHHHHhccCCEEEEcC
Q 006864 225 VSLVGKTLAVMGFG---K-------VGSEVARRAKGLGMNVIAHDPYAPADKARAVG--VELV-SFDQALATADFISLHM 291 (628)
Q Consensus 225 ~~l~GktiGIIGlG---~-------IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g--~~~~-sl~ell~~aDvV~l~~ 291 (628)
..+.|++|+|+|+. . =...+++.|+..|++|.+|||+...+....++ +..+ ++++++++||.|++++
T Consensus 329 ~~l~g~~V~vlGlafK~~tdD~ReSpa~~ii~~L~~~Ga~V~~~DP~~~~~~~~~~~~~~~~~~~~~~a~~~aDavvi~t 408 (444)
T 3vtf_A 329 GGLRGRHVGVLGLAFKPNTDDVRESRGVEVARLLLERGARVYVHDPMAMEKARAVLGDSVTYVEDPQALLDQVEGVIIAT 408 (444)
T ss_dssp TCCTTCEEEEECCSSSSSCCCCTTCHHHHHHHHHHHTTCEEEEECSSTHHHHHHHHGGGSEECSCHHHHHHHCSEEEECS
T ss_pred cccCCCEEEEEeeecCCCCCccccCcHHHHHHHHHHCCCEEEEECCCCChHHHHhcCCCceecCCHHHHHhCCCEEEEcc
Confidence 35899999999986 1 27789999999999999999987443333333 4444 7899999999999998
Q ss_pred CCCccccccccHHHHhcCCCCcEEEEc
Q 006864 292 PLNPTTSKIFNDETFAKMKKGVRIVNV 318 (628)
Q Consensus 292 Plt~~t~~li~~~~l~~mk~gailIN~ 318 (628)
+-. +-+.+ + + ++.+++|+
T Consensus 409 ~h~-ef~~l-d------~-~~~vv~D~ 426 (444)
T 3vtf_A 409 AWP-QYEGL-D------Y-RGKVVVDG 426 (444)
T ss_dssp CCG-GGGGS-C------C-TTCEEEES
T ss_pred CCH-HHhCC-C------c-CCCEEEEC
Confidence 632 22222 1 2 46788885
|
| >2fp4_A Succinyl-COA ligase [GDP-forming] alpha-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.2.1.8 c.23.4.1 PDB: 2fpg_A* 2fpi_A* 2fpp_A* 1euc_A* 1eud_A* | Back alignment and structure |
|---|
Probab=94.25 E-value=0.043 Score=56.89 Aligned_cols=106 Identities=19% Similarity=0.233 Sum_probs=71.2
Q ss_pred eecCCeEEEE-ec-ChhHHHHHHHHHcCCCEEE-EECCCCChhHHHHcCCccc-CHHHHhc--cCCEEEEcCCCCccccc
Q 006864 226 SLVGKTLAVM-GF-GKVGSEVARRAKGLGMNVI-AHDPYAPADKARAVGVELV-SFDQALA--TADFISLHMPLNPTTSK 299 (628)
Q Consensus 226 ~l~GktiGII-Gl-G~IG~~vA~~l~~~G~~V~-~~d~~~~~~~a~~~g~~~~-sl~ell~--~aDvV~l~~Plt~~t~~ 299 (628)
-+..+++.|| |+ |+.|+.+++.++.+|++++ ..||..... .-.|+... +++|+.+ ..|++++++|-. ....
T Consensus 10 l~~~~siaVV~Gasg~~G~~~~~~l~~~G~~~v~~VnP~~~g~--~i~G~~vy~sl~el~~~~~vD~avI~vP~~-~~~~ 86 (305)
T 2fp4_A 10 YVDKNTKVICQGFTGKQGTFHSQQALEYGTNLVGGTTPGKGGK--THLGLPVFNTVKEAKEQTGATASVIYVPPP-FAAA 86 (305)
T ss_dssp CCCTTCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECTTCTTC--EETTEEEESSHHHHHHHHCCCEEEECCCHH-HHHH
T ss_pred HhCCCcEEEEECCCCCHHHHHHHHHHHCCCcEEEEeCCCcCcc--eECCeeeechHHHhhhcCCCCEEEEecCHH-HHHH
Confidence 4567899999 99 9999999999999999855 578864111 12466655 7999998 899999999922 2222
Q ss_pred cccHHHHhcCCCCc-EEEEcCCCc-hhcHHHHHHHHhCC-Ce
Q 006864 300 IFNDETFAKMKKGV-RIVNVARGG-VIDEEALVRALDSG-VV 338 (628)
Q Consensus 300 li~~~~l~~mk~ga-ilIN~aRg~-~vde~aL~~aL~~g-~i 338 (628)
.+ ++.++ .|. .+++.+-|- .-++..+.+..++. .+
T Consensus 87 ~~-~e~i~---~Gi~~iv~~t~G~~~~~~~~l~~~a~~~~gi 124 (305)
T 2fp4_A 87 AI-NEAID---AEVPLVVCITEGIPQQDMVRVKHRLLRQGKT 124 (305)
T ss_dssp HH-HHHHH---TTCSEEEECCCCCCHHHHHHHHHHHTTCSSC
T ss_pred HH-HHHHH---CCCCEEEEECCCCChHHHHHHHHHHHhcCCc
Confidence 22 22232 232 346666663 33455788888776 44
|
| >3cps_A Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, glycolysis, malaria, structural genomics; HET: NAD; 1.90A {Cryptosporidium parvum iowa II} PDB: 1vsv_A* 1vsu_A* 3chz_A 3cie_A* 3cif_A* 3sth_A* | Back alignment and structure |
|---|
Probab=94.22 E-value=0.071 Score=56.39 Aligned_cols=86 Identities=23% Similarity=0.374 Sum_probs=54.4
Q ss_pred CeEEEEecChhHHHHHHHHHcC-CCEEEEE-CCCCChhH-HH--Hc----C-------------------Cccc---CHH
Q 006864 230 KTLAVMGFGKVGSEVARRAKGL-GMNVIAH-DPYAPADK-AR--AV----G-------------------VELV---SFD 278 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~-G~~V~~~-d~~~~~~~-a~--~~----g-------------------~~~~---sl~ 278 (628)
.+|||+|+|+||+.+.+.|... +++|.+. ||....+. +. +. | +... +.+
T Consensus 18 ikVgI~G~G~iGr~llR~l~~~p~veivaindp~~~~~~~a~ll~~ds~hg~~~~~v~~~~~~l~v~g~~i~v~~~~dp~ 97 (354)
T 3cps_A 18 GTLGINGFGRIGRLVLRACMERNDITVVAINDPFMDVEYMAYLLKYDSVHGNFNGTVEVSGKDLCINGKVVKVFQAKDPA 97 (354)
T ss_dssp CEEEEECCSHHHHHHHHHHHTCSSCEEEEEECTTSCHHHHHHHHHCCTTTCSCSSCEEECC-CEEETTEEEEEECCSCGG
T ss_pred eEEEEECCCHHHHHHHHHHHcCCCeEEEEecCCCCChhHhhhhhcccccCCCCCCcEEEeCCEEEECCeEEEEEecCChH
Confidence 3899999999999999999866 6888776 44543321 01 00 0 0011 334
Q ss_pred HH-h--ccCCEEEEcCCCCccccccccHHHHhcCCCCc--EEEEcCC
Q 006864 279 QA-L--ATADFISLHMPLNPTTSKIFNDETFAKMKKGV--RIVNVAR 320 (628)
Q Consensus 279 el-l--~~aDvV~l~~Plt~~t~~li~~~~l~~mk~ga--ilIN~aR 320 (628)
++ + ..+|+|+.|+|.... + +..-..++.|+ ++|+.+.
T Consensus 98 ~i~w~~~~vDvV~eatg~~~s-~----e~a~~~l~~GakkvVId~pa 139 (354)
T 3cps_A 98 EIPWGASGAQIVCESTGVFTT-E----EKASLHLKGGAKKVIISAPP 139 (354)
T ss_dssp GCCHHHHTCCEEEECSSSCCS-H----HHHGGGGTTTCSEEEESSCC
T ss_pred HCCcccCCCCEEEECCCchhh-H----HHHHHHHHcCCcEEEEeCCC
Confidence 43 2 479999999985432 1 22223467888 9998863
|
| >3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021} | Back alignment and structure |
|---|
Probab=94.21 E-value=0.049 Score=57.23 Aligned_cols=45 Identities=31% Similarity=0.347 Sum_probs=37.4
Q ss_pred cCCeEEEEecChhHHHHHHHHHcCCCEEEEECCCC-ChhHHHHcCC
Q 006864 228 VGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA-PADKARAVGV 272 (628)
Q Consensus 228 ~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~g~ 272 (628)
.|+++.|+|.|.||...++.++.+|++|++.++.. ..+.++++|+
T Consensus 189 ~g~~VlV~G~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa 234 (363)
T 3uog_A 189 AGDRVVVQGTGGVALFGLQIAKATGAEVIVTSSSREKLDRAFALGA 234 (363)
T ss_dssp TTCEEEEESSBHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTC
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCEEEEEecCchhHHHHHHcCC
Confidence 47899999999999999999999999999998764 2344555665
|
| >1u8x_X Maltose-6'-phosphate glucosidase; structural genomics, PSI, protein structure initiative, MCSG glucosidase, NAD-dependent; HET: G6P NAD; 2.05A {Bacillus subtilis} SCOP: c.2.1.5 d.162.1.2 | Back alignment and structure |
|---|
Probab=94.21 E-value=0.064 Score=58.94 Aligned_cols=114 Identities=11% Similarity=0.065 Sum_probs=71.8
Q ss_pred CCeEEEEecChh-HHHHHHHHHcC-----CCEEEEECCCCChhH-----HH----HcCC----cc-cCHHHHhccCCEEE
Q 006864 229 GKTLAVMGFGKV-GSEVARRAKGL-----GMNVIAHDPYAPADK-----AR----AVGV----EL-VSFDQALATADFIS 288 (628)
Q Consensus 229 GktiGIIGlG~I-G~~vA~~l~~~-----G~~V~~~d~~~~~~~-----a~----~~g~----~~-~sl~ell~~aDvV~ 288 (628)
.++|+|||.|.. |.++|..|... +.+|..||....... .. ..+. .. .++++.++.||+|+
T Consensus 28 ~~KIaVIGaGsv~~~ala~~L~~~~~~l~~~eV~L~Di~~e~~~~~~~~~~~~l~~~~~~~~I~~t~D~~eal~~AD~VV 107 (472)
T 1u8x_X 28 SFSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIREKAPDIEFAATTDPEEAFTDVDFVM 107 (472)
T ss_dssp CEEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHHHHHHHHCTTSEEEEESCHHHHHSSCSEEE
T ss_pred CCEEEEECCCHHHHHHHHHHHHhCCCCCCCCEEEEEeCCHHHHHHHHHHHHHHhccCCCCCEEEEECCHHHHHcCCCEEE
Confidence 469999999998 66576555433 668999998642110 01 1111 12 27889999999999
Q ss_pred EcCCCCcc---cc--------c--------------------ccc--HHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhC
Q 006864 289 LHMPLNPT---TS--------K--------------------IFN--DETFAKMKKGVRIVNVARGGVIDEEALVRALDS 335 (628)
Q Consensus 289 l~~Plt~~---t~--------~--------------------li~--~~~l~~mk~gailIN~aRg~~vde~aL~~aL~~ 335 (628)
+++|.... ++ + ++- .+.+....|+++++|++-.-=+-..++.+....
T Consensus 108 iaag~~~~~g~~rd~~ip~k~g~~~~eT~G~ggl~~~~rni~i~~~i~~~i~~~~P~A~ii~~TNPvdi~T~~~~k~~p~ 187 (472)
T 1u8x_X 108 AHIRVGKYAMRALDEQIPLKYGVVGQETCGPGGIAYGMRSIGGVLEILDYMEKYSPDAWMLNYSNPAAIVAEATRRLRPN 187 (472)
T ss_dssp ECCCTTHHHHHHHHHHHHHTTTCCCCSSSHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCSCHHHHHHHHHHHSTT
T ss_pred EcCCCccccccchhhhhhhhcCcccccccCchhHHHHhhhHHHHHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHHhCCC
Confidence 99986321 11 0 010 123444568999999986655555666665545
Q ss_pred CCeeEEE
Q 006864 336 GVVAQAA 342 (628)
Q Consensus 336 g~i~ga~ 342 (628)
.++.|.+
T Consensus 188 ~rViG~c 194 (472)
T 1u8x_X 188 SKILNIC 194 (472)
T ss_dssp CCEEECC
T ss_pred CCEEEeC
Confidence 5777753
|
| >3e5r_O PP38, glyceraldehyde-3-phosphate dehydrogenase, cytosolic; GAPDH, RICE, oxidoreductase, cytoplasm, glycolysis, NAD; HET: NAD; 2.30A {Oryza sativa subsp} PDB: 3e6a_O | Back alignment and structure |
|---|
Probab=94.20 E-value=0.053 Score=57.01 Aligned_cols=85 Identities=22% Similarity=0.395 Sum_probs=52.0
Q ss_pred eEEEEecChhHHHHHHHHHcC-CCEEEEE-CCCCChhHH-HH------cCC---------------------ccc---CH
Q 006864 231 TLAVMGFGKVGSEVARRAKGL-GMNVIAH-DPYAPADKA-RA------VGV---------------------ELV---SF 277 (628)
Q Consensus 231 tiGIIGlG~IG~~vA~~l~~~-G~~V~~~-d~~~~~~~a-~~------~g~---------------------~~~---sl 277 (628)
+|||+|+|+||+.+++.|... +++|.+. |+....+.. .. .|. ... ++
T Consensus 5 kVgI~G~GrIGr~l~R~l~~~p~vevvaI~d~~~~~~~~~~ll~yds~~g~~~~~~v~~~~~~~l~~~g~~i~v~~~~dp 84 (337)
T 3e5r_O 5 KIGINGFGRIGRLVARVALQSEDVELVAVNDPFITTDYMTYMFKYDTVHGQWKHSDIKIKDSKTLLLGEKPVTVFGIRNP 84 (337)
T ss_dssp EEEEECCSHHHHHHHHHHHTCSSEEEEEEECSSSCHHHHHHHHHCCTTTCCCCSSCEEESSSSEEEETTEEEEEECCSCG
T ss_pred EEEEECcCHHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHhhcccccCCCCCCCcEEeecCCeeEECCeEEEEEecCCh
Confidence 799999999999999999865 6787765 543222211 10 010 011 44
Q ss_pred HHH-h--ccCCEEEEcCCCCccccccccHHHHhcCCCCc--EEEEcCC
Q 006864 278 DQA-L--ATADFISLHMPLNPTTSKIFNDETFAKMKKGV--RIVNVAR 320 (628)
Q Consensus 278 ~el-l--~~aDvV~l~~Plt~~t~~li~~~~l~~mk~ga--ilIN~aR 320 (628)
+++ + ..+|+|+.|+|.... + +..-..++.|+ ++|+...
T Consensus 85 ~~l~w~~~~vDvV~eaTg~~~~-~----e~a~~~l~aGak~VVIs~pa 127 (337)
T 3e5r_O 85 DEIPWAEAGAEYVVESTGVFTD-K----EKAAAHLKGGAKKVVISAPS 127 (337)
T ss_dssp GGCCHHHHTCSEEEECSSSCCS-H----HHHTHHHHTTCSEEEESSCC
T ss_pred HHccccccCCCEEEECCCchhh-H----HHHHHHHHcCCCEEEEecCC
Confidence 544 2 478999999984432 2 22223356687 8888753
|
| >3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=94.19 E-value=0.026 Score=58.16 Aligned_cols=87 Identities=20% Similarity=0.148 Sum_probs=66.0
Q ss_pred cCCeEEEEe-cChhHHHHHHHHHcCCCEEEEECCCCChhHHHHcCCccc------C-HHHHhccCCEEEEcCCCCccccc
Q 006864 228 VGKTLAVMG-FGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELV------S-FDQALATADFISLHMPLNPTTSK 299 (628)
Q Consensus 228 ~GktiGIIG-lG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~------s-l~ell~~aDvV~l~~Plt~~t~~ 299 (628)
.|.++.|+| .|.+|...++.++.+|++|++.+.....+.++++|+..+ + +.+.+...|+|+-++.. .
T Consensus 152 ~g~~vlV~Ga~G~vG~~a~q~a~~~Ga~vi~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~~g~D~v~d~~g~-----~ 226 (321)
T 3tqh_A 152 QGDVVLIHAGAGGVGHLAIQLAKQKGTTVITTASKRNHAFLKALGAEQCINYHEEDFLLAISTPVDAVIDLVGG-----D 226 (321)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEECHHHHHHHHHHTCSEEEETTTSCHHHHCCSCEEEEEESSCH-----H
T ss_pred CCCEEEEEcCCcHHHHHHHHHHHHcCCEEEEEeccchHHHHHHcCCCEEEeCCCcchhhhhccCCCEEEECCCc-----H
Confidence 478999997 999999999999999999998864433455677787522 3 56666778999887752 1
Q ss_pred cccHHHHhcCCCCcEEEEcCC
Q 006864 300 IFNDETFAKMKKGVRIVNVAR 320 (628)
Q Consensus 300 li~~~~l~~mk~gailIN~aR 320 (628)
.. ...++.++++..++.++.
T Consensus 227 ~~-~~~~~~l~~~G~iv~~g~ 246 (321)
T 3tqh_A 227 VG-IQSIDCLKETGCIVSVPT 246 (321)
T ss_dssp HH-HHHGGGEEEEEEEEECCS
T ss_pred HH-HHHHHhccCCCEEEEeCC
Confidence 12 567788999999998853
|
| >1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D | Back alignment and structure |
|---|
Probab=94.13 E-value=0.043 Score=55.90 Aligned_cols=85 Identities=20% Similarity=0.298 Sum_probs=57.5
Q ss_pred cCCeEEEEec-ChhHHHHHHHHHcCCCEEEEECCCC-ChhHHHHcCCccc-C------HHHHhccCCEEEEcCCCCcccc
Q 006864 228 VGKTLAVMGF-GKVGSEVARRAKGLGMNVIAHDPYA-PADKARAVGVELV-S------FDQALATADFISLHMPLNPTTS 298 (628)
Q Consensus 228 ~GktiGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~g~~~~-s------l~ell~~aDvV~l~~Plt~~t~ 298 (628)
.|+++.|+|. |.||..+++.++.+|++|++.++.. ..+.++++|+..+ + +.+.+...|+|+- +.. +
T Consensus 125 ~g~~vlV~Ga~G~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~ga~~~~~~~~~~~~~~~~~~~d~vid-~g~--~-- 199 (302)
T 1iz0_A 125 PGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPLALGAEEAATYAEVPERAKAWGGLDLVLE-VRG--K-- 199 (302)
T ss_dssp TTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHHHTTCSEEEEGGGHHHHHHHTTSEEEEEE-CSC--T--
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhcCCCEEEECCcchhHHHHhcCceEEEE-CCH--H--
Confidence 4789999998 9999999999999999999998754 3344566665421 1 1222245677776 542 1
Q ss_pred ccccHHHHhcCCCCcEEEEcC
Q 006864 299 KIFNDETFAKMKKGVRIVNVA 319 (628)
Q Consensus 299 ~li~~~~l~~mk~gailIN~a 319 (628)
.-...++.|+++..++.++
T Consensus 200 --~~~~~~~~l~~~G~~v~~g 218 (302)
T 1iz0_A 200 --EVEESLGLLAHGGRLVYIG 218 (302)
T ss_dssp --THHHHHTTEEEEEEEEEC-
T ss_pred --HHHHHHHhhccCCEEEEEe
Confidence 1245566677777777765
|
| >3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=94.11 E-value=0.091 Score=55.39 Aligned_cols=87 Identities=24% Similarity=0.313 Sum_probs=56.8
Q ss_pred cCCeEEEEecChhHHHHHHHHHcCCC-EEEEECCCC-ChhHHHHcCCccc--------CHHHHhc-----cCCEEEEcCC
Q 006864 228 VGKTLAVMGFGKVGSEVARRAKGLGM-NVIAHDPYA-PADKARAVGVELV--------SFDQALA-----TADFISLHMP 292 (628)
Q Consensus 228 ~GktiGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~-~~~~a~~~g~~~~--------sl~ell~-----~aDvV~l~~P 292 (628)
.|.+|.|+|.|.||...++.++.+|. +|++.|+.. ..+.++++|+..+ ++.+.+. ..|+|+-++.
T Consensus 193 ~g~~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~i~~~~~gg~D~vid~~g 272 (378)
T 3uko_A 193 PGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKYETAKKFGVNEFVNPKDHDKPIQEVIVDLTDGGVDYSFECIG 272 (378)
T ss_dssp TTCCEEEECCSHHHHHHHHHHHHHTCSCEEEECSCTTHHHHHHTTTCCEEECGGGCSSCHHHHHHHHTTSCBSEEEECSC
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCcEEEccccCchhHHHHHHHhcCCCCCEEEECCC
Confidence 57899999999999999999999999 899999765 3455666775321 1222221 2566666554
Q ss_pred CCccccccccHHHHhcCCCC-cEEEEcC
Q 006864 293 LNPTTSKIFNDETFAKMKKG-VRIVNVA 319 (628)
Q Consensus 293 lt~~t~~li~~~~l~~mk~g-ailIN~a 319 (628)
.. ++ -...++.++++ ..++.++
T Consensus 273 ~~-~~----~~~~~~~l~~g~G~iv~~G 295 (378)
T 3uko_A 273 NV-SV----MRAALECCHKGWGTSVIVG 295 (378)
T ss_dssp CH-HH----HHHHHHTBCTTTCEEEECS
T ss_pred CH-HH----HHHHHHHhhccCCEEEEEc
Confidence 21 11 13445556664 6666654
|
| >4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=94.11 E-value=0.052 Score=56.54 Aligned_cols=86 Identities=24% Similarity=0.391 Sum_probs=54.8
Q ss_pred cCCeEEEEec-ChhHHHHHHHHHcCCCEEEEECCCC-ChhHHHHcCCccc-----CHHH----Hhc--cCCEEEEcCCCC
Q 006864 228 VGKTLAVMGF-GKVGSEVARRAKGLGMNVIAHDPYA-PADKARAVGVELV-----SFDQ----ALA--TADFISLHMPLN 294 (628)
Q Consensus 228 ~GktiGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~g~~~~-----sl~e----ll~--~aDvV~l~~Plt 294 (628)
.|+++.|+|. |.||...++.++.+|++|++.++.. ..+.++++|...+ ++.+ +.. ..|+|+-++...
T Consensus 159 ~g~~VlV~Gasg~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~ga~~v~~~~~~~~~~v~~~~~~~g~Dvvid~~g~~ 238 (342)
T 4eye_A 159 AGETVLVLGAAGGIGTAAIQIAKGMGAKVIAVVNRTAATEFVKSVGADIVLPLEEGWAKAVREATGGAGVDMVVDPIGGP 238 (342)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHTCSEEEESSTTHHHHHHHHTTTSCEEEEEESCC--
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCcEEecCchhHHHHHHHHhCCCCceEEEECCchh
Confidence 5889999998 9999999999999999999998764 3345555665321 1211 111 356666555421
Q ss_pred ccccccccHHHHhcCCCCcEEEEcC
Q 006864 295 PTTSKIFNDETFAKMKKGVRIVNVA 319 (628)
Q Consensus 295 ~~t~~li~~~~l~~mk~gailIN~a 319 (628)
.-...+..|+++..++.++
T Consensus 239 ------~~~~~~~~l~~~G~iv~~G 257 (342)
T 4eye_A 239 ------AFDDAVRTLASEGRLLVVG 257 (342)
T ss_dssp ------CHHHHHHTEEEEEEEEEC-
T ss_pred ------HHHHHHHhhcCCCEEEEEE
Confidence 1234555566666666654
|
| >3keo_A Redox-sensing transcriptional repressor REX; DNA binding protein, winged helix, rossmann fold, NAD+; HET: NAD; 1.50A {Streptococcus agalactiae serogroup iiiorganism_taxid} PDB: 3keq_A* 3ket_A* | Back alignment and structure |
|---|
Probab=94.07 E-value=0.023 Score=55.89 Aligned_cols=64 Identities=14% Similarity=0.230 Sum_probs=44.3
Q ss_pred CeEEEEecChhHHHHHHHH--HcCCCEEEEE-CCCCC-hhHH-HHcCCcc---cCHHHHhcc--CCEEEEcCCC
Q 006864 230 KTLAVMGFGKVGSEVARRA--KGLGMNVIAH-DPYAP-ADKA-RAVGVEL---VSFDQALAT--ADFISLHMPL 293 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l--~~~G~~V~~~-d~~~~-~~~a-~~~g~~~---~sl~ell~~--aDvV~l~~Pl 293 (628)
++++|+|.|++|+.+++.+ ...|+++.++ |.... ..-. .-.|+.. .++++++++ .|.+++++|-
T Consensus 85 ~~V~IvGaG~lG~aLa~~~~~~~~g~~iVg~~D~dp~~kiG~~~i~GvpV~~~~dL~~~v~~~~Id~vIIAvPs 158 (212)
T 3keo_A 85 TNVMLVGCGNIGRALLHYRFHDRNKMQISMAFDLDSNDLVGKTTEDGIPVYGISTINDHLIDSDIETAILTVPS 158 (212)
T ss_dssp EEEEEECCSHHHHHHTTCCCCTTSSEEEEEEEECTTSTTTTCBCTTCCBEEEGGGHHHHC-CCSCCEEEECSCG
T ss_pred CEEEEECcCHHHHHHHHhhhcccCCeEEEEEEeCCchhccCceeECCeEEeCHHHHHHHHHHcCCCEEEEecCc
Confidence 5799999999999999973 4568998774 65433 2111 1235543 367888874 9999999994
|
| >1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A | Back alignment and structure |
|---|
Probab=94.06 E-value=0.041 Score=57.08 Aligned_cols=86 Identities=16% Similarity=0.285 Sum_probs=58.2
Q ss_pred CCeEEEEecChhHHHHHHHHHcCCCEEEEECCCCChhHHHHcCCccc-----C---HHHH-hccCCEEEEcCCCCccccc
Q 006864 229 GKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELV-----S---FDQA-LATADFISLHMPLNPTTSK 299 (628)
Q Consensus 229 GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~-----s---l~el-l~~aDvV~l~~Plt~~t~~ 299 (628)
.+++.|+|+|++|+.+++.|...|. |++.|+........+.++..+ + |+++ +++||.++++++-. ..+
T Consensus 115 ~~~viI~G~G~~g~~l~~~L~~~g~-v~vid~~~~~~~~~~~~~~~i~gd~~~~~~L~~a~i~~a~~vi~~~~~d--~~n 191 (336)
T 1lnq_A 115 SRHVVICGWSESTLECLRELRGSEV-FVLAEDENVRKKVLRSGANFVHGDPTRVSDLEKANVRGARAVIVDLESD--SET 191 (336)
T ss_dssp -CEEEEESCCHHHHHHHTTGGGSCE-EEEESCGGGHHHHHHTTCEEEESCTTSHHHHHHTCSTTEEEEEECCSSH--HHH
T ss_pred cCCEEEECCcHHHHHHHHHHHhCCc-EEEEeCChhhhhHHhCCcEEEEeCCCCHHHHHhcChhhccEEEEcCCcc--HHH
Confidence 5689999999999999999999999 999998753222334555322 2 4444 67899999988732 334
Q ss_pred cccHHHHhcCCCCcEEEE
Q 006864 300 IFNDETFAKMKKGVRIVN 317 (628)
Q Consensus 300 li~~~~l~~mk~gailIN 317 (628)
+.-....+.+.+...++-
T Consensus 192 ~~~~~~ar~~~~~~~iia 209 (336)
T 1lnq_A 192 IHCILGIRKIDESVRIIA 209 (336)
T ss_dssp HHHHHHHHTTCTTSEEEE
T ss_pred HHHHHHHHHHCCCCeEEE
Confidence 444455566666644443
|
| >3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=94.05 E-value=0.033 Score=58.74 Aligned_cols=66 Identities=26% Similarity=0.421 Sum_probs=47.7
Q ss_pred ecCCeEEEEec-ChhHHHHHHHHHcCCC--EEEEECCCCChhHH-----HHc-----CCcc-cCHHHHhccCCEEEEcCC
Q 006864 227 LVGKTLAVMGF-GKVGSEVARRAKGLGM--NVIAHDPYAPADKA-----RAV-----GVEL-VSFDQALATADFISLHMP 292 (628)
Q Consensus 227 l~GktiGIIGl-G~IG~~vA~~l~~~G~--~V~~~d~~~~~~~a-----~~~-----g~~~-~sl~ell~~aDvV~l~~P 292 (628)
+.+++|+|||. |.+|+.+|..+..+|. +|..+|........ ... .+.. .++.+.++.||+|+++.-
T Consensus 6 ~~~~KV~ViGaaG~VG~~~a~~l~~~g~~~evvLiDi~~~k~~g~a~DL~~~~~~~~~i~~t~d~~~al~dADvVvitaG 85 (343)
T 3fi9_A 6 LTEEKLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPFAVGLEGVAEEIRHCGFEGLNLTFTSDIKEALTDAKYIVSSGG 85 (343)
T ss_dssp SCSSEEEEETTTSHHHHHHHHHHHHTTCCSCEEEECSCHHHHHHHHHHHHHHCCTTCCCEEESCHHHHHTTEEEEEECCC
T ss_pred cCCCEEEEECCCChHHHHHHHHHHhcCCCCEEEEEeCCchhHHHHHHhhhhCcCCCCceEEcCCHHHHhCCCCEEEEccC
Confidence 34689999998 9999999998887774 89999975321111 111 1122 367888999999999864
|
| >1nvm_B Acetaldehyde dehydrogenase (acylating), 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=93.94 E-value=0.06 Score=55.90 Aligned_cols=63 Identities=16% Similarity=0.253 Sum_probs=46.1
Q ss_pred CeEEEEecChhHHHHHHHHHc--CCCEEE-EECCCCCh---hHHHHcCCcc--cCHHHHhc-----cCCEEEEcCC
Q 006864 230 KTLAVMGFGKVGSEVARRAKG--LGMNVI-AHDPYAPA---DKARAVGVEL--VSFDQALA-----TADFISLHMP 292 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~--~G~~V~-~~d~~~~~---~~a~~~g~~~--~sl~ell~-----~aDvV~l~~P 292 (628)
.++||||+|.||+.+++.+.. -++++. ++|+.... ..++..|+.. .+.+++++ +.|+|+.++|
T Consensus 5 irVaIIG~G~iG~~~~~~l~~~~~~~elvav~d~~~~~~~~~~a~~~g~~~~~~~~e~ll~~~~~~~iDvV~~atp 80 (312)
T 1nvm_B 5 LKVAIIGSGNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGLARAQRMGVTTTYAGVEGLIKLPEFADIDFVFDATS 80 (312)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHCSSEEEEEEECSCTTCHHHHHHHHTTCCEESSHHHHHHHSGGGGGEEEEEECSC
T ss_pred CEEEEEcCcHHHHHHHHHHHhhCcCeEEEEEEeCChhhhHHHHHHHcCCCcccCCHHHHHhccCCCCCcEEEECCC
Confidence 479999999999999999943 467655 46776432 3455667652 35777764 5899999999
|
| >3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A | Back alignment and structure |
|---|
Probab=93.92 E-value=0.052 Score=56.62 Aligned_cols=87 Identities=23% Similarity=0.239 Sum_probs=56.4
Q ss_pred cCCeEEEEecChhHHHHHHHHHcCCC-EEEEECCCCC-hhHHHHcCCccc------CHHHH----hc--cCCEEEEcCCC
Q 006864 228 VGKTLAVMGFGKVGSEVARRAKGLGM-NVIAHDPYAP-ADKARAVGVELV------SFDQA----LA--TADFISLHMPL 293 (628)
Q Consensus 228 ~GktiGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~~-~~~a~~~g~~~~------sl~el----l~--~aDvV~l~~Pl 293 (628)
.|.++.|+|.|.||...++.++.+|. +|++.|+... .+.++++|+..+ ++.+. .. ..|+|+-++..
T Consensus 166 ~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~v~~~t~g~g~D~v~d~~g~ 245 (352)
T 3fpc_A 166 LGDTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRKHCCDIALEYGATDIINYKNGDIVEQILKATDGKGVDKVVIAGGD 245 (352)
T ss_dssp TTCCEEEECCSHHHHHHHHHHHTTTCSSEEEECCCHHHHHHHHHHTCCEEECGGGSCHHHHHHHHTTTCCEEEEEECSSC
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCceEEcCCCcCHHHHHHHHcCCCCCCEEEECCCC
Confidence 47899999999999999999999999 8999998652 355667775421 22211 11 25666655542
Q ss_pred CccccccccHHHHhcCCCCcEEEEcC
Q 006864 294 NPTTSKIFNDETFAKMKKGVRIVNVA 319 (628)
Q Consensus 294 t~~t~~li~~~~l~~mk~gailIN~a 319 (628)
.. .-...++.++++..++.++
T Consensus 246 ~~-----~~~~~~~~l~~~G~~v~~G 266 (352)
T 3fpc_A 246 VH-----TFAQAVKMIKPGSDIGNVN 266 (352)
T ss_dssp TT-----HHHHHHHHEEEEEEEEECC
T ss_pred hH-----HHHHHHHHHhcCCEEEEec
Confidence 11 1234455566666666654
|
| >2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.81 E-value=0.13 Score=54.01 Aligned_cols=91 Identities=24% Similarity=0.266 Sum_probs=64.8
Q ss_pred cCCeEEEEe-cChhHHHHHHHHHcCCCEEEEECCCCChhHHHHcCCccc------CHHHHh---ccCCEEEEcCCCCccc
Q 006864 228 VGKTLAVMG-FGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELV------SFDQAL---ATADFISLHMPLNPTT 297 (628)
Q Consensus 228 ~GktiGIIG-lG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~------sl~ell---~~aDvV~l~~Plt~~t 297 (628)
.|+++.|+| .|.||...++.++.+|++|++.+.....+.++++|+..+ ++.+.+ ...|+|+-++.....+
T Consensus 183 ~g~~VlV~Ga~G~vG~~~~qla~~~Ga~Vi~~~~~~~~~~~~~lGa~~v~~~~~~~~~~~~~~~~g~D~vid~~g~~~~~ 262 (375)
T 2vn8_A 183 TGKRVLILGASGGVGTFAIQVMKAWDAHVTAVCSQDASELVRKLGADDVIDYKSGSVEEQLKSLKPFDFILDNVGGSTET 262 (375)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECGGGHHHHHHTTCSEEEETTSSCHHHHHHTSCCBSEEEESSCTTHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEeChHHHHHHHHcCCCEEEECCchHHHHHHhhcCCCCEEEECCCChhhh
Confidence 588999999 799999999999999999998874334455677776432 233322 3589999887633111
Q ss_pred cccccHHHHhcCCCCcEEEEcCCCc
Q 006864 298 SKIFNDETFAKMKKGVRIVNVARGG 322 (628)
Q Consensus 298 ~~li~~~~l~~mk~gailIN~aRg~ 322 (628)
-...+..++++..++.++...
T Consensus 263 ----~~~~~~~l~~~G~iv~~g~~~ 283 (375)
T 2vn8_A 263 ----WAPDFLKKWSGATYVTLVTPF 283 (375)
T ss_dssp ----HGGGGBCSSSCCEEEESCCSH
T ss_pred ----hHHHHHhhcCCcEEEEeCCCc
Confidence 134566789999999997543
|
| >2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.75 E-value=0.073 Score=55.40 Aligned_cols=88 Identities=20% Similarity=0.174 Sum_probs=56.8
Q ss_pred cCCeEEEEec-ChhHHHHHHHHHcCCCEEEEECCCCC-hhHHHHcCCcc-------cCHHHHhc-----cCCEEEEcCCC
Q 006864 228 VGKTLAVMGF-GKVGSEVARRAKGLGMNVIAHDPYAP-ADKARAVGVEL-------VSFDQALA-----TADFISLHMPL 293 (628)
Q Consensus 228 ~GktiGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~g~~~-------~sl~ell~-----~aDvV~l~~Pl 293 (628)
.|+++.|+|. |.||+.+++.++..|++|++.++... .+.++++|... .++.+.+. ..|+|+.++..
T Consensus 169 ~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~V~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~~~D~vi~~~g~ 248 (347)
T 2hcy_A 169 AGHWVAISGAAGGLGSLAVQYAKAMGYRVLGIDGGEGKEELFRSIGGEVFIDFTKEKDIVGAVLKATDGGAHGVINVSVS 248 (347)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECSTTHHHHHHHTTCCEEEETTTCSCHHHHHHHHHTSCEEEEEECSSC
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCcEEEEcCCHHHHHHHHHcCCceEEecCccHhHHHHHHHHhCCCCCEEEECCCc
Confidence 4789999999 89999999999999999999987653 23445555421 12333322 35676665542
Q ss_pred CccccccccHHHHhcCCCCcEEEEcCC
Q 006864 294 NPTTSKIFNDETFAKMKKGVRIVNVAR 320 (628)
Q Consensus 294 t~~t~~li~~~~l~~mk~gailIN~aR 320 (628)
.+ .-...+..|+++..+++++.
T Consensus 249 ~~-----~~~~~~~~l~~~G~iv~~g~ 270 (347)
T 2hcy_A 249 EA-----AIEASTRYVRANGTTVLVGM 270 (347)
T ss_dssp HH-----HHHHHTTSEEEEEEEEECCC
T ss_pred HH-----HHHHHHHHHhcCCEEEEEeC
Confidence 11 12344555666667776653
|
| >4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=93.73 E-value=0.047 Score=57.09 Aligned_cols=86 Identities=16% Similarity=0.276 Sum_probs=55.4
Q ss_pred cCCeEEEE-ecChhHHHHHHHHHcCCCEEEEECCCC-ChhHHHHcCCccc------CHHHHhc-----cCCEEEEcCCCC
Q 006864 228 VGKTLAVM-GFGKVGSEVARRAKGLGMNVIAHDPYA-PADKARAVGVELV------SFDQALA-----TADFISLHMPLN 294 (628)
Q Consensus 228 ~GktiGII-GlG~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~g~~~~------sl~ell~-----~aDvV~l~~Plt 294 (628)
.|+++.|+ |.|.||..+++.++..|++|++.++.. ..+.++++|...+ ++.+.+. ..|+++-++..
T Consensus 167 ~g~~VlV~Gg~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~lGa~~~~~~~~~~~~~~~~~~~~~g~Dvvid~~g~- 245 (353)
T 4dup_A 167 EGESVLIHGGTSGIGTTAIQLARAFGAEVYATAGSTGKCEACERLGAKRGINYRSEDFAAVIKAETGQGVDIILDMIGA- 245 (353)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHHSSCEEEEEESCCG-
T ss_pred CCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCCEEEeCCchHHHHHHHHHhCCCceEEEECCCH-
Confidence 57899999 689999999999999999999998764 2344555564321 2222221 35666665541
Q ss_pred ccccccccHHHHhcCCCCcEEEEcC
Q 006864 295 PTTSKIFNDETFAKMKKGVRIVNVA 319 (628)
Q Consensus 295 ~~t~~li~~~~l~~mk~gailIN~a 319 (628)
+ .-...+..|+++..++.++
T Consensus 246 -~----~~~~~~~~l~~~G~iv~~g 265 (353)
T 4dup_A 246 -A----YFERNIASLAKDGCLSIIA 265 (353)
T ss_dssp -G----GHHHHHHTEEEEEEEEECC
T ss_pred -H----HHHHHHHHhccCCEEEEEE
Confidence 1 1234455566666666654
|
| >3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=93.71 E-value=0.064 Score=53.52 Aligned_cols=64 Identities=19% Similarity=0.241 Sum_probs=47.1
Q ss_pred CCeEEEEecChhHHHHHHHHHcCCCEEEEECCCCCh-hHHHHcCCccc-----CHHHHhccCCEEEEcCCCC
Q 006864 229 GKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPA-DKARAVGVELV-----SFDQALATADFISLHMPLN 294 (628)
Q Consensus 229 GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~~g~~~~-----sl~ell~~aDvV~l~~Plt 294 (628)
.++|.|.|.|.||+.+++.|...|++|++.++.... ......+++.+ +++ +..+|+|+.+....
T Consensus 5 ~~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~d~~--~~~~d~vi~~a~~~ 74 (286)
T 3ius_A 5 TGTLLSFGHGYTARVLSRALAPQGWRIIGTSRNPDQMEAIRASGAEPLLWPGEEPS--LDGVTHLLISTAPD 74 (286)
T ss_dssp CCEEEEETCCHHHHHHHHHHGGGTCEEEEEESCGGGHHHHHHTTEEEEESSSSCCC--CTTCCEEEECCCCB
T ss_pred cCcEEEECCcHHHHHHHHHHHHCCCEEEEEEcChhhhhhHhhCCCeEEEecccccc--cCCCCEEEECCCcc
Confidence 378999999999999999999999999999887532 22223444322 333 77889988777643
|
| >1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=93.69 E-value=0.049 Score=57.29 Aligned_cols=45 Identities=27% Similarity=0.301 Sum_probs=36.4
Q ss_pred cCCeEEEEecChhHHHHHHHHHcCCC-EEEEECCCC-ChhHHHHcCC
Q 006864 228 VGKTLAVMGFGKVGSEVARRAKGLGM-NVIAHDPYA-PADKARAVGV 272 (628)
Q Consensus 228 ~GktiGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~-~~~~a~~~g~ 272 (628)
.|+++.|+|.|.||...++.++.+|. +|++.|+.. ..+.++++|+
T Consensus 190 ~g~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~~~~~~~~~a~~lGa 236 (371)
T 1f8f_A 190 PASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGA 236 (371)
T ss_dssp TTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTC
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCC
Confidence 47899999999999999999999999 799998764 2344555564
|
| >3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus} | Back alignment and structure |
|---|
Probab=93.63 E-value=0.066 Score=55.76 Aligned_cols=45 Identities=33% Similarity=0.513 Sum_probs=36.6
Q ss_pred cCCeEEEE-ecChhHHHHHHHHHcCCCEEEEECCCC-ChhHHHHcCC
Q 006864 228 VGKTLAVM-GFGKVGSEVARRAKGLGMNVIAHDPYA-PADKARAVGV 272 (628)
Q Consensus 228 ~GktiGII-GlG~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~g~ 272 (628)
.|+++.|+ |.|.||...++.++.+|++|++.++.. ..+.++++|+
T Consensus 150 ~g~~VlV~gg~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa 196 (346)
T 3fbg_A 150 EGKTLLIINGAGGVGSIATQIAKAYGLRVITTASRNETIEWTKKMGA 196 (346)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEECCSHHHHHHHHHHTC
T ss_pred CCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCC
Confidence 68999999 799999999999999999999999854 2334444553
|
| >2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=93.62 E-value=0.085 Score=54.03 Aligned_cols=105 Identities=14% Similarity=0.134 Sum_probs=70.9
Q ss_pred ecCCeEEEEecChhHHHHHHHHHcCCCEEEEECCCCChhHHHHcCCccc-CHHHHhccCCEEEEcCCCCc----------
Q 006864 227 LVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELV-SFDQALATADFISLHMPLNP---------- 295 (628)
Q Consensus 227 l~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~-sl~ell~~aDvV~l~~Plt~---------- 295 (628)
+.|++|.|+|........++.|...|++|..+.-. ..+ ....|.... ++.+.++++|+|++..|...
T Consensus 5 ~~~mki~v~~~~~~~~~~~~~L~~~g~~v~~~~~~-~~~-~~~~g~~~~~~~~~~~~~~d~ii~~~~~~~~~~~i~s~~a 82 (300)
T 2rir_A 5 LTGLKIAVIGGDARQLEIIRKLTEQQADIYLVGFD-QLD-HGFTGAVKCNIDEIPFQQIDSIILPVSATTGEGVVSTVFS 82 (300)
T ss_dssp CCSCEEEEESBCHHHHHHHHHHHHTTCEEEEESCT-TSS-CCCTTEEECCGGGSCGGGCSEEECCSSCEETTTEECBSSC
T ss_pred ccCCEEEEECCCHHHHHHHHHHHhCCCEEEEEecc-ccc-cccccceeccchHHHHhcCCEEEeccccccCCcccccccc
Confidence 56889999999999999999999999999877421 111 111233322 46677889999987554321
Q ss_pred cccccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhCCCe
Q 006864 296 TTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVV 338 (628)
Q Consensus 296 ~t~~li~~~~l~~mk~gailIN~aRg~~vde~aL~~aL~~g~i 338 (628)
.+...++++.++.++++.+|+ + ++ |..++.+++.+..+
T Consensus 83 ~~~~~~~~~~l~~~~~l~~i~-~---g~-~~~d~~~~~~~~gi 120 (300)
T 2rir_A 83 NEEVVLKQDHLDRTPAHCVIF-S---GI-SNAYLENIAAQAKR 120 (300)
T ss_dssp SSCEECCHHHHHTSCTTCEEE-E---SS-CCHHHHHHHHHTTC
T ss_pred cCCccchHHHHhhcCCCCEEE-E---ec-CCHHHHHHHHHCCC
Confidence 223347899999999998887 3 33 55664455555444
|
| >3oqb_A Oxidoreductase; structural genomics, protein structure INI NEW YORK structural genomix research consortium, NYSGXRC, PSI-2; 2.60A {Bradyrhizobium japonicum} | Back alignment and structure |
|---|
Probab=93.60 E-value=0.16 Score=53.53 Aligned_cols=101 Identities=15% Similarity=0.164 Sum_probs=61.7
Q ss_pred CeEEEEe-cChhHHH-HH----HHHHcCC-CEE----------EEECCCCCh--hHHHHcCCc--ccCHHHHhcc--CCE
Q 006864 230 KTLAVMG-FGKVGSE-VA----RRAKGLG-MNV----------IAHDPYAPA--DKARAVGVE--LVSFDQALAT--ADF 286 (628)
Q Consensus 230 ktiGIIG-lG~IG~~-vA----~~l~~~G-~~V----------~~~d~~~~~--~~a~~~g~~--~~sl~ell~~--aDv 286 (628)
.+||||| +|.||+. .+ +.++..+ ..+ .++|+.... ..++..|+. +.++++++++ .|+
T Consensus 7 irigiiG~~G~~g~~~h~~~~~~~~~~~~~~~l~~~~~~~~~~av~~~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~iD~ 86 (383)
T 3oqb_A 7 LGLIMNGVTGRMGLNQHLIRSIVAIRDQGGVRLKNGDRIMPDPILVGRSAEKVEALAKRFNIARWTTDLDAALADKNDTM 86 (383)
T ss_dssp EEEEEESTTSTHHHHTTTTTTHHHHHHHTSEECTTSCEEEEEEEEECSSSHHHHHHHHHTTCCCEESCHHHHHHCSSCCE
T ss_pred eEEEEEeccchhhhhhhHHHHHHHHhhcCceeecCCcccceeeEEEcCCHHHHHHHHHHhCCCcccCCHHHHhcCCCCCE
Confidence 4799999 9999998 66 6665443 332 378887532 334566774 3589999975 899
Q ss_pred EEEcCCCCccccccccHHHHhcCCCCcEEEEcCC---CchhcHHHHHHHHhCC
Q 006864 287 ISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVAR---GGVIDEEALVRALDSG 336 (628)
Q Consensus 287 V~l~~Plt~~t~~li~~~~l~~mk~gailIN~aR---g~~vde~aL~~aL~~g 336 (628)
|++++|-.. . -+-..+.|+.|.-++ |-- -.+-+.+.|.++.++.
T Consensus 87 V~i~tp~~~--h---~~~~~~al~~Gk~V~-~EKP~a~~~~~~~~l~~~a~~~ 133 (383)
T 3oqb_A 87 FFDAATTQA--R---PGLLTQAINAGKHVY-CEKPIATNFEEALEVVKLANSK 133 (383)
T ss_dssp EEECSCSSS--S---HHHHHHHHTTTCEEE-ECSCSCSSHHHHHHHHHHHHHT
T ss_pred EEECCCchH--H---HHHHHHHHHCCCeEE-EcCCCCCCHHHHHHHHHHHHHc
Confidence 999999432 2 122333455555444 321 2333455566555443
|
| >2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=93.54 E-value=0.065 Score=55.70 Aligned_cols=46 Identities=17% Similarity=0.246 Sum_probs=38.1
Q ss_pred cCCeEEEEecChhHHHHHHHHHcC--CCEEEEECCCC-ChhHHHHcCCc
Q 006864 228 VGKTLAVMGFGKVGSEVARRAKGL--GMNVIAHDPYA-PADKARAVGVE 273 (628)
Q Consensus 228 ~GktiGIIGlG~IG~~vA~~l~~~--G~~V~~~d~~~-~~~~a~~~g~~ 273 (628)
.|.++.|+|.|.||...++.++.+ |++|++.++.. ..+.++++|+.
T Consensus 170 ~g~~VlV~GaG~vG~~aiqlak~~~~Ga~Vi~~~~~~~~~~~~~~lGa~ 218 (344)
T 2h6e_A 170 AEPVVIVNGIGGLAVYTIQILKALMKNITIVGISRSKKHRDFALELGAD 218 (344)
T ss_dssp SSCEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHTCS
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHHhCCC
Confidence 689999999999999999999999 99999999764 33445566653
|
| >3mw9_A GDH 1, glutamate dehydrogenase 1; allostery, inhibition, oxidoreducta; HET: GLU GTP NAD; 2.40A {Bos taurus} SCOP: c.2.1.7 c.58.1.1 PDB: 3mvo_A* 3mvq_A* 3qmu_A* 3etd_A* 3ete_A* 3etg_A* 1l1f_A 1nr1_A 1nr7_A 1nqt_A 1hwx_A* 1hwy_A* 1hwz_A* | Back alignment and structure |
|---|
Probab=93.52 E-value=0.22 Score=54.73 Aligned_cols=104 Identities=21% Similarity=0.297 Sum_probs=67.6
Q ss_pred eecCCeEEEEecChhHHHHHHHHHcCCCEEEE--------ECCCC-ChhHHH----HcC-------CcccCHHHHh-ccC
Q 006864 226 SLVGKTLAVMGFGKVGSEVARRAKGLGMNVIA--------HDPYA-PADKAR----AVG-------VELVSFDQAL-ATA 284 (628)
Q Consensus 226 ~l~GktiGIIGlG~IG~~vA~~l~~~G~~V~~--------~d~~~-~~~~a~----~~g-------~~~~sl~ell-~~a 284 (628)
++.|+|+.|-|+|++|+..|+.|..+|++|++ |||.- +.+... +.| .+.++ ++++ ..|
T Consensus 241 ~l~g~tVaVQG~GNVG~~aa~~L~e~GakVVavsDs~G~iyd~~Gid~~~l~~~k~~~g~i~~~~~a~~~~-~~il~~~~ 319 (501)
T 3mw9_A 241 GFGDKTFVVQGFGNVGLHSMRYLHRFGAKCITVGESDGSIWNPDGIDPKELEDFKLQHGTILGFPKAKIYE-GSILEVDC 319 (501)
T ss_dssp SSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEECSSCEEECTTCCCHHHHHHHHHHHSSSTTCTTSEEEC-SCGGGSCC
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCceEECCCCCCHHHHHHHHHhcCCeecccCceeec-cccccccc
Confidence 58999999999999999999999999999987 44442 222211 111 11121 1334 468
Q ss_pred CEEEEcCCCCccccccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhCCCe
Q 006864 285 DFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVV 338 (628)
Q Consensus 285 DvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~~vde~aL~~aL~~g~i 338 (628)
|+.+-|. +.+.|+.+...+++ -.+|+-.|.+. ...+|- +.|.+..|
T Consensus 320 DIliPcA-----~~n~I~~~na~~l~-akiV~EgAN~p-~T~eA~-~iL~~rGI 365 (501)
T 3mw9_A 320 DILIPAA-----SEKQLTKSNAPRVK-AKIIAEGANGP-TTPEAD-KIFLERNI 365 (501)
T ss_dssp SEEEECS-----SSCCBCTTTGGGCC-CSEEECCSSSC-BCHHHH-HHHHHTTC
T ss_pred eEEeecc-----ccCccCHhHHHHcC-ceEEEeCCCCc-CCHHHH-HHHHHCCC
Confidence 9887765 35677777777775 45777777776 455543 44444333
|
| >4gsl_A Ubiquitin-like modifier-activating enzyme ATG7; ubiquitin-like protein activation enzyme, ubiquitin-like Pro transfer enzyme, protein transport; 2.70A {Saccharomyces cerevisiae} PDB: 3vh2_A 4gsk_A 3vh1_A | Back alignment and structure |
|---|
Probab=93.50 E-value=0.12 Score=58.16 Aligned_cols=74 Identities=16% Similarity=0.258 Sum_probs=50.6
Q ss_pred cCceEEcCCCC-ChhhHHHHHHHHHHHHHHchhHHHHHHHcCcccccccce-eeecCCeEEEEecChhHHHHHHHHHcCC
Q 006864 175 FGCLVVNAPIA-NTVAAAEHGIALLASMARNVSQADASIKAGKWLRSKYVG-VSLVGKTLAVMGFGKVGSEVARRAKGLG 252 (628)
Q Consensus 175 ~GI~V~n~p~~-~~~avAE~~l~l~L~~~R~i~~~~~~~~~g~W~~~~~~g-~~l~GktiGIIGlG~IG~~vA~~l~~~G 252 (628)
.+-..++-... +....||.+.-+-|-+.| |.--...| ..|++++|.|||+|.+|..+|+.|...|
T Consensus 283 l~~~~~~l~~~~dp~~la~~~~~Lnlklm~-------------wRllp~~g~ekL~~arVLIVGaGGLGs~vA~~La~aG 349 (615)
T 4gsl_A 283 LAPRVVDLSSLLDPLKIADQSVDLNLKLMK-------------WRILPDLNLDIIKNTKVLLLGAGTLGCYVSRALIAWG 349 (615)
T ss_dssp SCCEEEECHHHHCHHHHHHHHHHHHHHHHH-------------HHTCTTCCHHHHHTCEEEEECCSHHHHHHHHHHHHTT
T ss_pred cceeEEeccccCCHHHHHhhhhhhhhHHHH-------------HhhcchhhHHHHhCCeEEEECCCHHHHHHHHHHHHcC
Confidence 33455554433 556677777666554444 32111122 3689999999999999999999999999
Q ss_pred C-EEEEECCC
Q 006864 253 M-NVIAHDPY 261 (628)
Q Consensus 253 ~-~V~~~d~~ 261 (628)
. ++..+|..
T Consensus 350 VG~ItLvD~D 359 (615)
T 4gsl_A 350 VRKITFVDNG 359 (615)
T ss_dssp CCEEEEECCC
T ss_pred CCEEEEEcCC
Confidence 6 78888864
|
| >1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A* | Back alignment and structure |
|---|
Probab=93.48 E-value=0.089 Score=55.02 Aligned_cols=95 Identities=20% Similarity=0.224 Sum_probs=60.5
Q ss_pred cCCeEEEEe-cChhHHHHHHHHHcCCCEEEEECCCCChhH---HHHc-CCc------cc---CHHHHhccCCEEEEcCCC
Q 006864 228 VGKTLAVMG-FGKVGSEVARRAKGLGMNVIAHDPYAPADK---ARAV-GVE------LV---SFDQALATADFISLHMPL 293 (628)
Q Consensus 228 ~GktiGIIG-lG~IG~~vA~~l~~~G~~V~~~d~~~~~~~---a~~~-g~~------~~---sl~ell~~aDvV~l~~Pl 293 (628)
.++++.|.| .|.||+.+++.|...|++|++.++...... .... +++ .. ++.++++.+|+|+.++..
T Consensus 4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~l~~~~~v~~v~~D~l~d~~~l~~~~~~~d~Vi~~a~~ 83 (352)
T 1xgk_A 4 QKKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGLIAEELQAIPNVTLFQGPLLNNVPLMDTLFEGAHLAFINTTS 83 (352)
T ss_dssp CCCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCSCSHHHHHHHTSTTEEEEESCCTTCHHHHHHHHTTCSEEEECCCS
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCChhhHHHHhhcCCcEEEECCccCCHHHHHHHHhcCCEEEEcCCC
Confidence 368899998 599999999999989999999887653321 1111 221 11 266778999999876653
Q ss_pred CccccccccHHHHhcCCC-C--cEEEEcCCCc
Q 006864 294 NPTTSKIFNDETFAKMKK-G--VRIVNVARGG 322 (628)
Q Consensus 294 t~~t~~li~~~~l~~mk~-g--ailIN~aRg~ 322 (628)
.....+......++.+++ | ..||+++...
T Consensus 84 ~~~~~~~~~~~l~~aa~~~g~v~~~V~~SS~~ 115 (352)
T 1xgk_A 84 QAGDEIAIGKDLADAAKRAGTIQHYIYSSMPD 115 (352)
T ss_dssp TTSCHHHHHHHHHHHHHHHSCCSEEEEEECCC
T ss_pred CCcHHHHHHHHHHHHHHHcCCccEEEEeCCcc
Confidence 311112223444444432 3 4788887754
|
| >2yyy_A Glyceraldehyde-3-phosphate dehydrogenase; glyceraldehyde 3-phosphate binding, alpha and beta proteins (A/B) class, MJ1146; HET: NAP; 1.85A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=93.37 E-value=0.13 Score=54.14 Aligned_cols=28 Identities=29% Similarity=0.494 Sum_probs=24.5
Q ss_pred eEEEEecChhHHHHHHHHHcC-CCEEEEE
Q 006864 231 TLAVMGFGKVGSEVARRAKGL-GMNVIAH 258 (628)
Q Consensus 231 tiGIIGlG~IG~~vA~~l~~~-G~~V~~~ 258 (628)
++||+|+|+||+.+++.|... +++|.+.
T Consensus 4 kVgI~G~G~IGr~v~r~l~~~~~~evvaV 32 (343)
T 2yyy_A 4 KVLINGYGSIGKRVADAVSMQDDMEVIGV 32 (343)
T ss_dssp EEEEECCSHHHHHHHHHHHHSSSEEEEEE
T ss_pred EEEEECCCHHHHHHHHHHHhCCCceEEEE
Confidence 799999999999999998765 5887765
|
| >3kzn_A Aotcase, N-acetylornithine carbamoyltransferase; transcarbamylase, amino-acid biosynthesis, arginine biosynthesis, cytoplasm; HET: KCX AOR; 1.80A {Xanthomonas campestris PV} PDB: 3kzc_A* 3kzm_A* 3kzk_A* 3kzo_A* 3m4j_A* 3m5d_A* 3m5c_A* 3l05_A* 3l02_A* 3m4n_A* 3l06_A* 3l04_A* | Back alignment and structure |
|---|
Probab=93.34 E-value=1.1 Score=47.31 Aligned_cols=102 Identities=20% Similarity=0.132 Sum_probs=66.2
Q ss_pred hHHHhcCceEEcCCCCChhhHHHHHHHHHHHHHHchhHHHHHHHcCcccccccceeeecCCeEEEEec-------ChhHH
Q 006864 170 QAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGKTLAVMGF-------GKVGS 242 (628)
Q Consensus 170 ~aa~~~GI~V~n~p~~~~~avAE~~l~l~L~~~R~i~~~~~~~~~g~W~~~~~~g~~l~GktiGIIGl-------G~IG~ 242 (628)
..|....|+|.|. |.+..++- +++=++.+.+++ ...++.|++++++|. .++..
T Consensus 151 ~~a~~~~vPVIN~-g~~~HPtQ--aL~Dl~Ti~e~~-----------------G~~dl~g~kv~~~~~~~gd~~~~~Va~ 210 (359)
T 3kzn_A 151 SFAKYSPVPVINM-ETITHPCQ--ELAHALALQEHF-----------------GTPDLRGKKYVLTWTYHPKPLNTAVAN 210 (359)
T ss_dssp HHHHHCSSCEEES-SSSCCHHH--HHHHHHHHHHHH-----------------TSSCCTTCEEEEEECCCSSCCCSHHHH
T ss_pred HHHHhCCCcccCc-ccccCchH--HHHHHHHHHHHc-----------------CCccccCCeEEEEEeecCCccccchhh
Confidence 4456678999996 54443332 222233333211 123688999999976 36888
Q ss_pred HHHHHHHcCCCEEEEECCCC---C-hh-------HHHHcCCc--c-cCHHHHhccCCEEEEcC
Q 006864 243 EVARRAKGLGMNVIAHDPYA---P-AD-------KARAVGVE--L-VSFDQALATADFISLHM 291 (628)
Q Consensus 243 ~vA~~l~~~G~~V~~~d~~~---~-~~-------~a~~~g~~--~-~sl~ell~~aDvV~l~~ 291 (628)
+....+..||++|...-|.. + .. .+.+.|.. . .++++.++.||+|..-.
T Consensus 211 S~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~~g~~i~~~~d~~eav~~aDvvyt~r 273 (359)
T 3kzn_A 211 SALTIATRMGMDVTLLCPTPDYILDERYMDWAAQNVAESGGSLQVSHDIDSAYAGADVVYAKS 273 (359)
T ss_dssp HHHHHHHHTTCEEEEECSSGGGCCCHHHHHHHHHHHHHHSCEEEEECCHHHHHTTCSEEEEEC
T ss_pred hhHHHHHhccccEEEEecccccCCCHHHHHHHHHHHHhhCCCcccccCHHHHhcCCeEEEEEE
Confidence 99999999999999987741 1 11 12233432 2 38999999999998754
|
| >3vh1_A Ubiquitin-like modifier-activating enzyme ATG7; autophagy, zinc binding, metal binding protein; 3.00A {Saccharomyces cerevisiae} PDB: 3vh2_A | Back alignment and structure |
|---|
Probab=93.34 E-value=0.14 Score=57.69 Aligned_cols=91 Identities=14% Similarity=0.176 Sum_probs=62.3
Q ss_pred eeecCCeEEEEecChhHHHHHHHHHcCCC-EEEEECCCC-------------------Chh-----HHHHc--CCc--c-
Q 006864 225 VSLVGKTLAVMGFGKVGSEVARRAKGLGM-NVIAHDPYA-------------------PAD-----KARAV--GVE--L- 274 (628)
Q Consensus 225 ~~l~GktiGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~-------------------~~~-----~a~~~--g~~--~- 274 (628)
..|++++|.|||+|.+|..+|+.|...|. ++..+|... +.. ...+. +++ .
T Consensus 323 ~kL~~~kVLIVGaGGLGs~va~~La~aGVG~ItLvD~D~Ve~SNL~RQ~L~~~~DvG~~KAeaaa~~L~~iNP~v~v~~~ 402 (598)
T 3vh1_A 323 DIIKNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGTVSYSNPVRQALYNFEDCGKPKAELAAASLKRIFPLMDATGV 402 (598)
T ss_dssp HHHHTCEEEEECCSHHHHHHHHHHHTTTCCEEEEECCSBCCTTSTTTSTTCCSTTCSSBHHHHHHHHHHHHCTTCEEEEE
T ss_pred HHHhCCeEEEECCCHHHHHHHHHHHHcCCCEEEEECCCcccccccccccccchhhcCcHHHHHHHHHHHhHCCCcEEEEE
Confidence 57899999999999999999999999996 788887531 000 01111 111 0
Q ss_pred ---------------------cCHHHHhccCCEEEEcCCCCccccccccHHHHhcCCCCcEEEEcC
Q 006864 275 ---------------------VSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVA 319 (628)
Q Consensus 275 ---------------------~sl~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~a 319 (628)
..++++++++|+|+.++. +.+++.++++..... +..+|+.+
T Consensus 403 ~~~I~~pgh~i~~~~~~~l~~~~l~~li~~~DvVvdatD-n~~tR~lin~~c~~~---~~plI~aa 464 (598)
T 3vh1_A 403 KLSIPMIGHKLVNEEAQHKDFDRLRALIKEHDIIFLLVD-SRESRWLPSLLSNIE---NKTVINAA 464 (598)
T ss_dssp CCCCCCSSCCCCSHHHHHHHHHHHHHHHHHCSEEEECCS-BGGGTHHHHHHHHHT---TCEEEEEE
T ss_pred eccccccCcccccccccccCHHHHHHHHhcCCEEEECCC-CHHHHHHHHHHHHhc---CCCEEEEE
Confidence 013567889999998886 556788887766543 33566643
|
| >2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A* | Back alignment and structure |
|---|
Probab=93.34 E-value=0.05 Score=57.15 Aligned_cols=45 Identities=20% Similarity=0.212 Sum_probs=36.4
Q ss_pred cCCeEEEEe-cChhHHHHHHHHHcCCCEEEEECCCC-ChhHHHHcCC
Q 006864 228 VGKTLAVMG-FGKVGSEVARRAKGLGMNVIAHDPYA-PADKARAVGV 272 (628)
Q Consensus 228 ~GktiGIIG-lG~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~g~ 272 (628)
.|+++.|+| .|.||..+++.++.+|++|++.++.. ..+.++++|+
T Consensus 163 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~Ga 209 (362)
T 2c0c_A 163 EGKKVLVTAAAGGTGQFAMQLSKKAKCHVIGTCSSDEKSAFLKSLGC 209 (362)
T ss_dssp TTCEEEETTTTBTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTC
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCC
Confidence 478999999 79999999999999999999998763 2234455554
|
| >2ejw_A HDH, homoserine dehydrogenase; NAD-dependent, oxidoreductase; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=93.28 E-value=0.032 Score=58.59 Aligned_cols=99 Identities=16% Similarity=0.108 Sum_probs=58.7
Q ss_pred eEEEEecChhHHHHHHHHHcC---------CCEEEE-ECCCCChhHHHHcCC--cccCHHHHhccCCEEEEcCCCCcccc
Q 006864 231 TLAVMGFGKVGSEVARRAKGL---------GMNVIA-HDPYAPADKARAVGV--ELVSFDQALATADFISLHMPLNPTTS 298 (628)
Q Consensus 231 tiGIIGlG~IG~~vA~~l~~~---------G~~V~~-~d~~~~~~~a~~~g~--~~~sl~ell~~aDvV~l~~Plt~~t~ 298 (628)
++||||+|.||+.+++.++.. +++|.+ +|+..... +..+. ...++++++ +.|+|+.|+|-.. ..
T Consensus 5 rvgIiG~G~VG~~~~~~l~~~~~~l~~~g~~~~lvaV~d~~~~~~--~~~~~~~~~~d~~~ll-~iDvVve~t~~~~-~a 80 (332)
T 2ejw_A 5 KIALLGGGTVGSAFYNLVLERAEELSAFGVVPRFLGVLVRDPRKP--RAIPQELLRAEPFDLL-EADLVVEAMGGVE-AP 80 (332)
T ss_dssp EEEEECCSHHHHHHHHHHHHTGGGGGGGTEEEEEEEEECSCTTSC--CSSCGGGEESSCCCCT-TCSEEEECCCCSH-HH
T ss_pred EEEEEcCCHHHHHHHHHHHhChhhHhhcCCCEEEEEEEECCHHHh--hccCcccccCCHHHHh-CCCEEEECCCCcH-HH
Confidence 799999999999999998765 467655 56653211 11111 123778888 9999999988432 11
Q ss_pred ccccHHHHhcCCCCcEEEEcCCCch-hcHHHHHHHHhCC
Q 006864 299 KIFNDETFAKMKKGVRIVNVARGGV-IDEEALVRALDSG 336 (628)
Q Consensus 299 ~li~~~~l~~mk~gailIN~aRg~~-vde~aL~~aL~~g 336 (628)
. .-..+.|+.|.-+|...-..+ ...+.|.++.++.
T Consensus 81 ~---~~~~~AL~aGKhVVtaNkkpla~~~~eL~~~A~~~ 116 (332)
T 2ejw_A 81 L---RLVLPALEAGIPLITANKALLAEAWESLRPFAEEG 116 (332)
T ss_dssp H---HHHHHHHHTTCCEEECCHHHHHHSHHHHHHHHHTT
T ss_pred H---HHHHHHHHcCCeEEECCchhHHHHHHHHHHHHHhC
Confidence 1 112233555655555321122 2445666666665
|
| >3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=93.28 E-value=0.06 Score=55.17 Aligned_cols=86 Identities=15% Similarity=0.116 Sum_probs=56.2
Q ss_pred cCCeEEEEecChhHHHHHHHHHcCCCEEEEECCCCChhHHHHcCCccc--CHHHHhccCCEEEEcCCCCccccccccHHH
Q 006864 228 VGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELV--SFDQALATADFISLHMPLNPTTSKIFNDET 305 (628)
Q Consensus 228 ~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~--sl~ell~~aDvV~l~~Plt~~t~~li~~~~ 305 (628)
.|.++.|+|.|.+|...++.++.+|++|++.+.....+.++++|+..+ +.+++-...|+|+-++.. +.+ ...
T Consensus 142 ~g~~VlV~GaG~vG~~a~qlak~~Ga~Vi~~~~~~~~~~~~~lGa~~v~~d~~~v~~g~Dvv~d~~g~-~~~-----~~~ 215 (315)
T 3goh_A 142 KQREVLIVGFGAVNNLLTQMLNNAGYVVDLVSASLSQALAAKRGVRHLYREPSQVTQKYFAIFDAVNS-QNA-----AAL 215 (315)
T ss_dssp SCCEEEEECCSHHHHHHHHHHHHHTCEEEEECSSCCHHHHHHHTEEEEESSGGGCCSCEEEEECC-------------TT
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEChhhHHHHHHcCCCEEEcCHHHhCCCccEEEECCCc-hhH-----HHH
Confidence 478999999999999999999999999999993335566777776432 211222346666665542 111 234
Q ss_pred HhcCCCCcEEEEcC
Q 006864 306 FAKMKKGVRIVNVA 319 (628)
Q Consensus 306 l~~mk~gailIN~a 319 (628)
++.++++..++.++
T Consensus 216 ~~~l~~~G~~v~~g 229 (315)
T 3goh_A 216 VPSLKANGHIICIQ 229 (315)
T ss_dssp GGGEEEEEEEEEEC
T ss_pred HHHhcCCCEEEEEe
Confidence 55667777777663
|
| >3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=93.27 E-value=0.098 Score=50.16 Aligned_cols=65 Identities=14% Similarity=0.116 Sum_probs=46.3
Q ss_pred CeEEEEe-cChhHHHHHHHHHcCCCEEEEECCCCChhHHHHcCCc-----c----cCHHHHhccCCEEEEcCCCCc
Q 006864 230 KTLAVMG-FGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVE-----L----VSFDQALATADFISLHMPLNP 295 (628)
Q Consensus 230 ktiGIIG-lG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~-----~----~sl~ell~~aDvV~l~~Plt~ 295 (628)
++|.|.| .|.||+.+++.|...|++|++.++........ .+++ . .++.++++.+|+|+.+.....
T Consensus 1 M~ilItGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~-~~~~~~~~D~~d~~~~~~~~~~~~d~vi~~ag~~~ 75 (219)
T 3dqp_A 1 MKIFIVGSTGRVGKSLLKSLSTTDYQIYAGARKVEQVPQY-NNVKAVHFDVDWTPEEMAKQLHGMDAIINVSGSGG 75 (219)
T ss_dssp CEEEEESTTSHHHHHHHHHHTTSSCEEEEEESSGGGSCCC-TTEEEEECCTTSCHHHHHTTTTTCSEEEECCCCTT
T ss_pred CeEEEECCCCHHHHHHHHHHHHCCCEEEEEECCccchhhc-CCceEEEecccCCHHHHHHHHcCCCEEEECCcCCC
Confidence 3688998 89999999999999999999998764221100 1111 1 135567788999988876554
|
| >1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A* | Back alignment and structure |
|---|
Probab=93.27 E-value=0.074 Score=54.87 Aligned_cols=35 Identities=34% Similarity=0.335 Sum_probs=32.0
Q ss_pred cCCeEEEEec-ChhHHHHHHHHHcCCCEEEEECCCC
Q 006864 228 VGKTLAVMGF-GKVGSEVARRAKGLGMNVIAHDPYA 262 (628)
Q Consensus 228 ~GktiGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~ 262 (628)
.|+++.|.|. |.||..+++.++..|++|++.|+..
T Consensus 145 ~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~ 180 (333)
T 1v3u_A 145 GGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSD 180 (333)
T ss_dssp SSCEEEEESTTBHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred CCCEEEEecCCCcHHHHHHHHHHHCCCEEEEEeCCH
Confidence 5799999998 9999999999999999999998753
|
| >3ip3_A Oxidoreductase, putative; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.14A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=93.26 E-value=0.078 Score=55.06 Aligned_cols=62 Identities=8% Similarity=0.066 Sum_probs=44.8
Q ss_pred CeEEEEecChhHHHHHHHHHcCCCEEEE-ECCCC--ChhHHH----HcCC--c-ccCHHHHhcc--CCEEEEcCC
Q 006864 230 KTLAVMGFGKVGSEVARRAKGLGMNVIA-HDPYA--PADKAR----AVGV--E-LVSFDQALAT--ADFISLHMP 292 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~G~~V~~-~d~~~--~~~~a~----~~g~--~-~~sl~ell~~--aDvV~l~~P 292 (628)
.++||||+|.+|+..++.+ .-+++|.+ +|+.. ..+.+. +.|+ . +.++++++++ .|+|++++|
T Consensus 3 ~rvgiiG~G~~~~~~~~~l-~~~~~lvav~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~vD~V~I~tp 76 (337)
T 3ip3_A 3 LKICVIGSSGHFRYALEGL-DEECSITGIAPGVPEEDLSKLEKAISEMNIKPKKYNNWWEMLEKEKPDILVINTV 76 (337)
T ss_dssp EEEEEECSSSCHHHHHTTC-CTTEEEEEEECSSTTCCCHHHHHHHHTTTCCCEECSSHHHHHHHHCCSEEEECSS
T ss_pred eEEEEEccchhHHHHHHhc-CCCcEEEEEecCCchhhHHHHHHHHHHcCCCCcccCCHHHHhcCCCCCEEEEeCC
Confidence 4799999999999777777 56788775 68764 222222 2354 2 3489999975 899999998
|
| >3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=93.25 E-value=0.069 Score=55.41 Aligned_cols=45 Identities=20% Similarity=0.248 Sum_probs=37.5
Q ss_pred cCCeEEEEecC-hhHHHHHHHHHcCCCEEEEECCCC-ChhHHHHcCC
Q 006864 228 VGKTLAVMGFG-KVGSEVARRAKGLGMNVIAHDPYA-PADKARAVGV 272 (628)
Q Consensus 228 ~GktiGIIGlG-~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~g~ 272 (628)
.|+++.|+|.| .||...++.++.+|++|++.++.. ..+.++++|.
T Consensus 144 ~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~lga 190 (340)
T 3gms_A 144 RNDVLLVNACGSAIGHLFAQLSQILNFRLIAVTRNNKHTEELLRLGA 190 (340)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHHTC
T ss_pred CCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhCCC
Confidence 57899999998 999999999999999999998765 3455566665
|
| >4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A* | Back alignment and structure |
|---|
Probab=93.23 E-value=0.044 Score=56.66 Aligned_cols=45 Identities=27% Similarity=0.314 Sum_probs=36.2
Q ss_pred cCCeEEEEec-ChhHHHHHHHHHcCCCEEEEECCCCC-hhHH-HHcCC
Q 006864 228 VGKTLAVMGF-GKVGSEVARRAKGLGMNVIAHDPYAP-ADKA-RAVGV 272 (628)
Q Consensus 228 ~GktiGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a-~~~g~ 272 (628)
.|+++.|+|. |.||..+++.++.+|++|++.++... .+.+ +++|+
T Consensus 149 ~g~~vlI~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~ 196 (336)
T 4b7c_A 149 NGETVVISGAAGAVGSVAGQIARLKGCRVVGIAGGAEKCRFLVEELGF 196 (336)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcCC
Confidence 4789999999 99999999999999999999987642 2333 44554
|
| >4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A | Back alignment and structure |
|---|
Probab=93.23 E-value=0.092 Score=57.82 Aligned_cols=108 Identities=15% Similarity=0.241 Sum_probs=71.4
Q ss_pred CCeEEEEecChhHHH-HHHHHHcCCCEEEEECCCCCh--hHHHHcCCccc--CHHHHhccCCEEEEc--CCCC-ccc---
Q 006864 229 GKTLAVMGFGKVGSE-VARRAKGLGMNVIAHDPYAPA--DKARAVGVELV--SFDQALATADFISLH--MPLN-PTT--- 297 (628)
Q Consensus 229 GktiGIIGlG~IG~~-vA~~l~~~G~~V~~~d~~~~~--~~a~~~g~~~~--sl~ell~~aDvV~l~--~Plt-~~t--- 297 (628)
.|++.|||+|.+|.+ +|+.|+..|++|.++|..... +..++.|++.. .-.+.+..+|+|++. +|.+ |+.
T Consensus 22 ~~~v~viGiG~sG~s~~A~~l~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~g~~~~~~~~~d~vV~Spgi~~~~p~~~~a 101 (494)
T 4hv4_A 22 VRHIHFVGIGGAGMGGIAEVLANEGYQISGSDLAPNSVTQHLTALGAQIYFHHRPENVLDASVVVVSTAISADNPEIVAA 101 (494)
T ss_dssp CCEEEEETTTSTTHHHHHHHHHHTTCEEEEECSSCCHHHHHHHHTTCEEESSCCGGGGTTCSEEEECTTSCTTCHHHHHH
T ss_pred CCEEEEEEEcHhhHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHCCCEEECCCCHHHcCCCCEEEECCCCCCCCHHHHHH
Confidence 589999999999996 899999999999999976533 23455677543 122346789999885 4432 211
Q ss_pred --c--ccccH-HHHhc-CCCC-cEEEEcCCCchhcHHHHHHHHhCC
Q 006864 298 --S--KIFND-ETFAK-MKKG-VRIVNVARGGVIDEEALVRALDSG 336 (628)
Q Consensus 298 --~--~li~~-~~l~~-mk~g-ailIN~aRg~~vde~aL~~aL~~g 336 (628)
+ .++.+ +.|.. |+.. .+-|-=+.|+.--..-+...|+..
T Consensus 102 ~~~gi~v~~~~e~l~~~~~~~~~IaVTGTnGKTTTt~ml~~iL~~~ 147 (494)
T 4hv4_A 102 REARIPVIRRAEMLAELMRYRHGIAVAGTHGKTTTTAMLSSIYAEA 147 (494)
T ss_dssp HHTTCCEEEHHHHHHHHHTTSEEEEEECSSSHHHHHHHHHHHHHHT
T ss_pred HHCCCCEEcHHHHHHHHhcCCCEEEEecCCChHHHHHHHHHHHHhc
Confidence 1 12333 23333 3322 355555689988888888888753
|
| >3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A* | Back alignment and structure |
|---|
Probab=93.15 E-value=0.069 Score=55.21 Aligned_cols=45 Identities=22% Similarity=0.226 Sum_probs=36.9
Q ss_pred cCCeEEEEe-cChhHHHHHHHHHcCCCEEEEECCCC-ChhHHHHcCC
Q 006864 228 VGKTLAVMG-FGKVGSEVARRAKGLGMNVIAHDPYA-PADKARAVGV 272 (628)
Q Consensus 228 ~GktiGIIG-lG~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~g~ 272 (628)
.|+++.|+| .|.||...++.++.+|++|++.++.. ..+.++++|.
T Consensus 148 ~g~~vlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~ga 194 (334)
T 3qwb_A 148 KGDYVLLFAAAGGVGLILNQLLKMKGAHTIAVASTDEKLKIAKEYGA 194 (334)
T ss_dssp TTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCC
Confidence 578999999 89999999999999999999998754 2334555554
|
| >1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A* | Back alignment and structure |
|---|
Probab=93.15 E-value=0.13 Score=55.60 Aligned_cols=85 Identities=15% Similarity=0.179 Sum_probs=59.8
Q ss_pred cCCeEEEEecC----------hhHHHHHHHHHcCCCEEEEECCCCChhHH----HHcC--------Ccc-cCHHHHhccC
Q 006864 228 VGKTLAVMGFG----------KVGSEVARRAKGLGMNVIAHDPYAPADKA----RAVG--------VEL-VSFDQALATA 284 (628)
Q Consensus 228 ~GktiGIIGlG----------~IG~~vA~~l~~~G~~V~~~d~~~~~~~a----~~~g--------~~~-~sl~ell~~a 284 (628)
.|++|+|+|+. .-...+++.|...|++|.+|||+.+.... ..++ ..+ .++.+.++.|
T Consensus 312 ~~~~v~vlGlafK~~~~d~r~s~~~~i~~~L~~~g~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (436)
T 1mv8_A 312 DTRKVGLLGLSFKAGTDDLRESPLVELAEMLIGKGYELRIFDRNVEYARVHGANKEYIESKIPHVSSLLVSDLDEVVASS 391 (436)
T ss_dssp SCCEEEEECCSSSTTCCCCTTCHHHHHHHHHHHTTCEEEEECHHHHHHTTSSSCHHHHHHTSHHHHTTBCSCHHHHHHHC
T ss_pred cCCEEEEEccccCCCCCccccCcHHHHHHHHHHCCCEEEEECCCCChhhccchhhhhcccccccccccccCCHHHHHhCC
Confidence 79999999997 46789999999999999999998422110 1111 122 3688899999
Q ss_pred CEEEEcCCCCccccccccHHHHhcCCCCcEEEEc
Q 006864 285 DFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNV 318 (628)
Q Consensus 285 DvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~ 318 (628)
|+|++++.- ++-+.+ + .+.|+ +.+|+|+
T Consensus 392 d~~vi~~~~-~~~~~~-~---~~~~~-~~~i~D~ 419 (436)
T 1mv8_A 392 DVLVLGNGD-ELFVDL-V---NKTPS-GKKLVDL 419 (436)
T ss_dssp SEEEECSCC-GGGHHH-H---HSCCT-TCEEEES
T ss_pred cEEEEeCCc-HHHHhh-h---HHhcC-CCEEEEC
Confidence 999998874 332211 1 34455 6788887
|
| >1hdg_O Holo-D-glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase (aldehy(D)-NAD(A)); HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=93.12 E-value=0.073 Score=55.84 Aligned_cols=30 Identities=30% Similarity=0.491 Sum_probs=25.0
Q ss_pred CeEEEEecChhHHHHHHHHHcC---CCEEEEEC
Q 006864 230 KTLAVMGFGKVGSEVARRAKGL---GMNVIAHD 259 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~---G~~V~~~d 259 (628)
.+|||+|+|+||+.+.+.|... .++|.+.+
T Consensus 1 ~kVgI~G~G~iGr~llR~l~~~~~p~~eivain 33 (332)
T 1hdg_O 1 ARVAINGFGRIGRLVYRIIYERKNPDIEVVAIN 33 (332)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCTTCEEEEEE
T ss_pred CEEEEEccCHHHHHHHHHHHhCCCCCeEEEEEE
Confidence 4799999999999999998754 58988664
|
| >3on5_A BH1974 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, oxidoreductase; 2.80A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=93.09 E-value=0.16 Score=53.79 Aligned_cols=132 Identities=17% Similarity=0.248 Sum_probs=88.2
Q ss_pred CeEEEEecChhHHHHHHHHHcCCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEcCCCCccccccccHHHHhc-
Q 006864 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAK- 308 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~sl~ell~~aDvV~l~~Plt~~t~~li~~~~l~~- 308 (628)
.++-|+|.|.+|+++++.++.+|++|.++|++..... .+-+..+|-++..-| .+.+..
T Consensus 200 ~~L~I~GaGhva~aLa~la~~lgf~V~v~D~R~~~~~-----------~~~fp~a~~v~~~~p----------~~~~~~~ 258 (362)
T 3on5_A 200 ERLIIFGAGPDVPPLVTFASNVGFYTVVTDWRPNQCE-----------KHFFPDADEIIVDFP----------ADFLRKF 258 (362)
T ss_dssp EEEEEECCSTTHHHHHHHHHHHTEEEEEEESCGGGGC-----------GGGCTTCSEEEESCH----------HHHHHHS
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEECCCccccc-----------cccCCCceEEecCCH----------HHHHhhc
Confidence 4799999999999999999999999999998742110 112345665554333 223333
Q ss_pred -CCCCcEEEEcCCCchhcHHHHHHHHhCCCeeEEEe---e-----ccCCCCCCCCCccccCCcEEEcC---CCCCCcHHH
Q 006864 309 -MKKGVRIVNVARGGVIDEEALVRALDSGVVAQAAL---D-----VFTEEPPAKDSKLVQHENVTVTP---HLGASTKEA 376 (628)
Q Consensus 309 -mk~gailIN~aRg~~vde~aL~~aL~~g~i~ga~l---D-----V~~~EP~~~~~~L~~~~nvilTP---Hig~~T~ea 376 (628)
+.+++.+|=..++.-.|...|.++|+.. ....|+ - ..+..- ...+ |-+| .+|+.|.+
T Consensus 259 ~~~~~t~vvv~TH~h~~D~~~L~~aL~~~-~~YiG~iGSr~R~~rl~~~g~--------~~~r-i~~PIGL~Iga~tP~- 327 (362)
T 3on5_A 259 LIRPDDFVLIMTHHFQKDQEILHFLLEKE-LRYIGILGSKERTRRLLQNRK--------PPDH-LYSPVGLSIDAQGPE- 327 (362)
T ss_dssp CCCTTCEEEECCSCHHHHHHHHHHHSSSC-CSEEEESSCHHHHHHHHTSCC--------CCTT-EESSCSCCSCCCSHH-
T ss_pred CCCCCeEEEEEeCCchhhHHHHHHHhcCC-CCEEEEeCCHHHHHHHHhcCC--------cHhh-eECCCCCCCCCCCHH-
Confidence 6778888888899999999999999875 222222 1 111110 0112 3444 47888875
Q ss_pred HHHHHHHHHHHHHHHHcCC
Q 006864 377 QEGVAIEIAEAVVGALRGE 395 (628)
Q Consensus 377 ~~~~~~~~~~~i~~~l~g~ 395 (628)
.++.-++-+|....+|.
T Consensus 328 --EIAvSI~AEiia~~~~~ 344 (362)
T 3on5_A 328 --EIAISIVAQLIQLIRSR 344 (362)
T ss_dssp --HHHHHHHHHHHHHHHHS
T ss_pred --HHHHHHHHHHHHHHhCC
Confidence 56788888888888877
|
| >1vkn_A N-acetyl-gamma-glutamyl-phosphate reductase; TM1782, structu genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; 1.80A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=93.08 E-value=0.18 Score=53.26 Aligned_cols=85 Identities=14% Similarity=0.206 Sum_probs=56.5
Q ss_pred CeEEEEe-cChhHHHHHHHHHcCC-CEEEEECCCCC--hhHH-------HHcCCcccCHHHHhccCCEEEEcCCCCcccc
Q 006864 230 KTLAVMG-FGKVGSEVARRAKGLG-MNVIAHDPYAP--ADKA-------RAVGVELVSFDQALATADFISLHMPLNPTTS 298 (628)
Q Consensus 230 ktiGIIG-lG~IG~~vA~~l~~~G-~~V~~~d~~~~--~~~a-------~~~g~~~~sl~ell~~aDvV~l~~Plt~~t~ 298 (628)
.++|||| .|.+|+++.++|.... .++........ .... .++-++..+.++++.++|++++|+|-..
T Consensus 14 ~~V~IvGAtG~vG~ellrlL~~hP~~el~~l~S~~~aG~~~~~~~p~~~~~l~~~~~~~~~~~~~~Dvvf~alp~~~--- 90 (351)
T 1vkn_A 14 IRAGIIGATGYTGLELVRLLKNHPEAKITYLSSRTYAGKKLEEIFPSTLENSILSEFDPEKVSKNCDVLFTALPAGA--- 90 (351)
T ss_dssp EEEEEESTTSHHHHHHHHHHHHCTTEEEEEEECSTTTTSBHHHHCGGGCCCCBCBCCCHHHHHHHCSEEEECCSTTH---
T ss_pred eEEEEECCCCHHHHHHHHHHHcCCCcEEEEEeCcccccCChHHhChhhccCceEEeCCHHHhhcCCCEEEECCCcHH---
Confidence 5799996 7999999999998765 46665532211 1111 1122223356677788999999999432
Q ss_pred ccccHHHHhcCCCCcEEEEcCCC
Q 006864 299 KIFNDETFAKMKKGVRIVNVARG 321 (628)
Q Consensus 299 ~li~~~~l~~mk~gailIN~aRg 321 (628)
..+....+ .|+.+||.+.-
T Consensus 91 ---s~~~~~~~-~g~~VIDlSsd 109 (351)
T 1vkn_A 91 ---SYDLVREL-KGVKIIDLGAD 109 (351)
T ss_dssp ---HHHHHTTC-CSCEEEESSST
T ss_pred ---HHHHHHHh-CCCEEEECChh
Confidence 34555556 79999998743
|
| >3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A* | Back alignment and structure |
|---|
Probab=93.06 E-value=0.2 Score=51.57 Aligned_cols=66 Identities=17% Similarity=0.162 Sum_probs=45.9
Q ss_pred ecCCeEEEEec-ChhHHHHHHHHHcCCCEEEEECCCC--ChhHH------HHcCCccc--------CHHHHhc--cCCEE
Q 006864 227 LVGKTLAVMGF-GKVGSEVARRAKGLGMNVIAHDPYA--PADKA------RAVGVELV--------SFDQALA--TADFI 287 (628)
Q Consensus 227 l~GktiGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~--~~~~a------~~~g~~~~--------sl~ell~--~aDvV 287 (628)
+..++|.|.|. |.||+.+++.|...|.+|.+.++.. ..... ...+++.+ ++.++++ .+|+|
T Consensus 8 M~~~~IlVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~~~~l~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~V 87 (346)
T 3i6i_A 8 SPKGRVLIAGATGFIGQFVATASLDAHRPTYILARPGPRSPSKAKIFKALEDKGAIIVYGLINEQEAMEKILKEHEIDIV 87 (346)
T ss_dssp ---CCEEEECTTSHHHHHHHHHHHHTTCCEEEEECSSCCCHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHHHTTCCEE
T ss_pred CCCCeEEEECCCcHHHHHHHHHHHHCCCCEEEEECCCCCChhHHHHHHHHHhCCcEEEEeecCCHHHHHHHHhhCCCCEE
Confidence 34679999997 9999999999999999999998764 22221 12344321 3566777 88888
Q ss_pred EEcCC
Q 006864 288 SLHMP 292 (628)
Q Consensus 288 ~l~~P 292 (628)
+.+..
T Consensus 88 i~~a~ 92 (346)
T 3i6i_A 88 VSTVG 92 (346)
T ss_dssp EECCC
T ss_pred EECCc
Confidence 77665
|
| >2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa} | Back alignment and structure |
|---|
Probab=93.05 E-value=0.2 Score=50.32 Aligned_cols=65 Identities=17% Similarity=0.256 Sum_probs=46.0
Q ss_pred CCeEEEEec-ChhHHHHHHHHHcCCCEEEEECCCC----Ch-hHH------HHcCCccc--------CHHHHhccCCEEE
Q 006864 229 GKTLAVMGF-GKVGSEVARRAKGLGMNVIAHDPYA----PA-DKA------RAVGVELV--------SFDQALATADFIS 288 (628)
Q Consensus 229 GktiGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~----~~-~~a------~~~g~~~~--------sl~ell~~aDvV~ 288 (628)
+++|.|.|. |.||+.+++.|...|++|++.++.. .. +.. ...+++.+ ++.++++.+|+|+
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~l~~~~~~~d~vi 81 (307)
T 2gas_A 2 ENKILILGPTGAIGRHIVWASIKAGNPTYALVRKTITAANPETKEELIDNYQSLGVILLEGDINDHETLVKAIKQVDIVI 81 (307)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHHTCCEEEEECCSCCSSCHHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEEE
T ss_pred CcEEEEECCCchHHHHHHHHHHhCCCcEEEEECCCcccCChHHHHHHHHHHHhCCCEEEEeCCCCHHHHHHHHhCCCEEE
Confidence 578999995 9999999999998899999987764 11 111 12344321 3567777888887
Q ss_pred EcCCC
Q 006864 289 LHMPL 293 (628)
Q Consensus 289 l~~Pl 293 (628)
.+++.
T Consensus 82 ~~a~~ 86 (307)
T 2gas_A 82 CAAGR 86 (307)
T ss_dssp ECSSS
T ss_pred ECCcc
Confidence 76653
|
| >4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=93.03 E-value=0.13 Score=52.51 Aligned_cols=87 Identities=18% Similarity=0.271 Sum_probs=55.0
Q ss_pred CeEEEEe-cChhHHHHHHHHHc-CCCEEEE-ECCCCChhH----HH----HcCCcc-cCHHHHhccCCEEEEcCCCCccc
Q 006864 230 KTLAVMG-FGKVGSEVARRAKG-LGMNVIA-HDPYAPADK----AR----AVGVEL-VSFDQALATADFISLHMPLNPTT 297 (628)
Q Consensus 230 ktiGIIG-lG~IG~~vA~~l~~-~G~~V~~-~d~~~~~~~----a~----~~g~~~-~sl~ell~~aDvV~l~~Plt~~t 297 (628)
.+|+|+| +|+||+.+++.+.. -++++.+ +|+..+... .. ..|+.. .++++++.++|+|+-+.| ++.
T Consensus 8 ikV~V~Ga~G~MG~~i~~~l~~~~~~eLv~~~d~~~~~~~G~d~gel~g~~~gv~v~~dl~~ll~~~DVVIDfT~--p~a 85 (272)
T 4f3y_A 8 MKIAIAGASGRMGRMLIEAVLAAPDATLVGALDRTGSPQLGQDAGAFLGKQTGVALTDDIERVCAEADYLIDFTL--PEG 85 (272)
T ss_dssp EEEEESSTTSHHHHHHHHHHHHCTTEEEEEEBCCTTCTTTTSBTTTTTTCCCSCBCBCCHHHHHHHCSEEEECSC--HHH
T ss_pred cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEEecCcccccccHHHHhCCCCCceecCCHHHHhcCCCEEEEcCC--HHH
Confidence 5899999 99999999998874 5788877 687532111 00 013433 379999999999998875 332
Q ss_pred cccccHHHHhcCCCCcEEEEcCCC
Q 006864 298 SKIFNDETFAKMKKGVRIVNVARG 321 (628)
Q Consensus 298 ~~li~~~~l~~mk~gailIN~aRg 321 (628)
.. +..-..++.|.-+|-...|
T Consensus 86 ~~---~~~~~al~~G~~vVigTTG 106 (272)
T 4f3y_A 86 TL---VHLDAALRHDVKLVIGTTG 106 (272)
T ss_dssp HH---HHHHHHHHHTCEEEECCCC
T ss_pred HH---HHHHHHHHcCCCEEEECCC
Confidence 11 1111224556556654444
|
| >1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5 | Back alignment and structure |
|---|
Probab=93.02 E-value=0.17 Score=48.25 Aligned_cols=50 Identities=14% Similarity=0.183 Sum_probs=37.7
Q ss_pred CcEEEEeccCCCCchhhHHhhhhcCCccccceEEeeee------cCccEEEEEEeC
Q 006864 558 GNLILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTF------RRNHGIMAIGVD 607 (628)
Q Consensus 558 ~~~Llv~~~D~PGvIa~V~~iL~~~~INIa~m~v~R~~------~gg~Al~~i~vD 607 (628)
.+.|.+.-+|+||++++|+.+|+++++||.+++..... ..+.-.|.+.++
T Consensus 93 ~~~l~v~~~D~~Gil~~v~~~l~~~~~nI~~~~~~t~~~~~~~~~~~~F~~~~~~~ 148 (192)
T 1u8s_A 93 TVEVYVESDDKLGLTEKFTQFFAQRQIGMASLSAQTISKDKLHSEQNQFHIAISAR 148 (192)
T ss_dssp EEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEEEC--------CEEEEEEEEE
T ss_pred eEEEEEEeCCCccHHHHHHHHHHHcCCcHHHhhhhcccCCccCCCCCEEEEEEEEe
Confidence 34566677999999999999999999999999887543 334555666554
|
| >3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A* | Back alignment and structure |
|---|
Probab=92.92 E-value=0.39 Score=47.47 Aligned_cols=38 Identities=29% Similarity=0.395 Sum_probs=33.2
Q ss_pred eeecCCeEEEEec-Ch--hHHHHHHHHHcCCCEEEEECCCC
Q 006864 225 VSLVGKTLAVMGF-GK--VGSEVARRAKGLGMNVIAHDPYA 262 (628)
Q Consensus 225 ~~l~GktiGIIGl-G~--IG~~vA~~l~~~G~~V~~~d~~~ 262 (628)
.++.||++.|.|. |. ||+++|+.|...|++|++.++..
T Consensus 3 ~~l~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~ 43 (266)
T 3oig_A 3 FSLEGRNIVVMGVANKRSIAWGIARSLHEAGARLIFTYAGE 43 (266)
T ss_dssp SCCTTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSG
T ss_pred cccCCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEecCch
Confidence 3578999999997 45 99999999999999999987764
|
| >3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A* | Back alignment and structure |
|---|
Probab=92.89 E-value=0.17 Score=52.55 Aligned_cols=88 Identities=20% Similarity=0.148 Sum_probs=63.3
Q ss_pred cCCeEEEEecChhHHHHHHHHHcC-CCEEEEECCCC-ChhHHHHcCCccc-----CHH----HHhc--cCCEEEEcCCCC
Q 006864 228 VGKTLAVMGFGKVGSEVARRAKGL-GMNVIAHDPYA-PADKARAVGVELV-----SFD----QALA--TADFISLHMPLN 294 (628)
Q Consensus 228 ~GktiGIIGlG~IG~~vA~~l~~~-G~~V~~~d~~~-~~~~a~~~g~~~~-----sl~----ell~--~aDvV~l~~Plt 294 (628)
.|.++.|+|.|.+|...++.++.+ |.+|++.|+.. ..+.++++|+..+ ++. ++.. ..|+|+-++...
T Consensus 171 ~g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~v~~~t~g~g~d~v~d~~G~~ 250 (345)
T 3jv7_A 171 PGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDLDDDRLALAREVGADAAVKSGAGAADAIRELTGGQGATAVFDFVGAQ 250 (345)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHTTCSEEEECSTTHHHHHHHHHGGGCEEEEEESSCCH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCCEEEcCCCcHHHHHHHHhCCCCCeEEEECCCCH
Confidence 478999999999999999999988 78999998765 3456677886432 222 2222 589998887632
Q ss_pred ccccccccHHHHhcCCCCcEEEEcCC
Q 006864 295 PTTSKIFNDETFAKMKKGVRIVNVAR 320 (628)
Q Consensus 295 ~~t~~li~~~~l~~mk~gailIN~aR 320 (628)
. .-...++.++++..++.++-
T Consensus 251 ~-----~~~~~~~~l~~~G~iv~~G~ 271 (345)
T 3jv7_A 251 S-----TIDTAQQVVAVDGHISVVGI 271 (345)
T ss_dssp H-----HHHHHHHHEEEEEEEEECSC
T ss_pred H-----HHHHHHHHHhcCCEEEEECC
Confidence 1 12456677888888888763
|
| >1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=92.88 E-value=0.11 Score=55.22 Aligned_cols=46 Identities=39% Similarity=0.435 Sum_probs=37.9
Q ss_pred cCCeEEEEecChhHHHHHHHHHcCCC-EEEEECCCC-ChhHHHHcCCc
Q 006864 228 VGKTLAVMGFGKVGSEVARRAKGLGM-NVIAHDPYA-PADKARAVGVE 273 (628)
Q Consensus 228 ~GktiGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~-~~~~a~~~g~~ 273 (628)
.|.++.|+|.|.||...++.++.+|+ +|++.|+.. ..+.++++|+.
T Consensus 185 ~g~~VlV~GaG~vG~~aiqlAk~~Ga~~Vi~~~~~~~~~~~a~~lGa~ 232 (398)
T 1kol_A 185 PGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQGFE 232 (398)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCE
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHHcCCc
Confidence 47899999999999999999999999 799998764 33456667754
|
| >3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A* | Back alignment and structure |
|---|
Probab=92.84 E-value=0.076 Score=54.74 Aligned_cols=45 Identities=31% Similarity=0.417 Sum_probs=36.5
Q ss_pred cCCeEEEEe-cChhHHHHHHHHHcCCCEEEEECCCC-ChhHHHHcCC
Q 006864 228 VGKTLAVMG-FGKVGSEVARRAKGLGMNVIAHDPYA-PADKARAVGV 272 (628)
Q Consensus 228 ~GktiGIIG-lG~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~g~ 272 (628)
.|+++.|+| .|.||...++.++.+|++|++.++.. ..+.++++|.
T Consensus 140 ~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~Ga 186 (325)
T 3jyn_A 140 PGEIILFHAAAGGVGSLACQWAKALGAKLIGTVSSPEKAAHAKALGA 186 (325)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHTC
T ss_pred CCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCC
Confidence 578999999 89999999999999999999998754 2334455554
|
| >2ep5_A 350AA long hypothetical aspartate-semialdehyde dehydrogenase; oxidoreductase, structural genomics, NPPSFA; 2.40A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=92.83 E-value=0.079 Score=55.82 Aligned_cols=84 Identities=17% Similarity=0.284 Sum_probs=48.5
Q ss_pred CeEEEEe-cChhHHHHHHHHHcCC-CEEEEE-CCC--CChhHHHHc-------------CCccc--CHHHHhccCCEEEE
Q 006864 230 KTLAVMG-FGKVGSEVARRAKGLG-MNVIAH-DPY--APADKARAV-------------GVELV--SFDQALATADFISL 289 (628)
Q Consensus 230 ktiGIIG-lG~IG~~vA~~l~~~G-~~V~~~-d~~--~~~~~a~~~-------------g~~~~--sl~ell~~aDvV~l 289 (628)
.++||+| +|.||+.+.+.|.... +++.+. +.. ......... ..... +.++ +..+|+|++
T Consensus 5 ~kV~IiGAtG~iG~~llr~L~~~p~~elvai~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~~vDvVf~ 83 (350)
T 2ep5_A 5 IKVSLLGSTGMVGQKMVKMLAKHPYLELVKVSASPSKIGKKYKDAVKWIEQGDIPEEVQDLPIVSTNYED-HKDVDVVLS 83 (350)
T ss_dssp EEEEEESCSSHHHHHHHHHHTTCSSEEEEEEECCGGGTTSBHHHHCCCCSSSSCCHHHHTCBEECSSGGG-GTTCSEEEE
T ss_pred cEEEEECcCCHHHHHHHHHHHhCCCcEEEEEecChhhcCCCHHHhcCcccccccccCCceeEEeeCCHHH-hcCCCEEEE
Confidence 4799999 9999999999997654 677666 322 111111111 11122 3333 478999999
Q ss_pred cCCCCccccccccHHHHhcCCCCcEEEEcC
Q 006864 290 HMPLNPTTSKIFNDETFAKMKKGVRIVNVA 319 (628)
Q Consensus 290 ~~Plt~~t~~li~~~~l~~mk~gailIN~a 319 (628)
|+|-.. ++.+ .-..++.|+.+|+.+
T Consensus 84 atp~~~-s~~~----a~~~~~aG~~VId~s 108 (350)
T 2ep5_A 84 ALPNEL-AESI----ELELVKNGKIVVSNA 108 (350)
T ss_dssp CCCHHH-HHHH----HHHHHHTTCEEEECS
T ss_pred CCChHH-HHHH----HHHHHHCCCEEEECC
Confidence 998332 1111 111235577777765
|
| >1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A* | Back alignment and structure |
|---|
Probab=92.81 E-value=0.14 Score=49.61 Aligned_cols=68 Identities=16% Similarity=0.081 Sum_probs=47.6
Q ss_pred ecCCeEEEEe-cChhHHHHHHHHHcC--CCEEEEECCCCChhHHHHcCCcc--------cCHHHHhccCCEEEEcCCCC
Q 006864 227 LVGKTLAVMG-FGKVGSEVARRAKGL--GMNVIAHDPYAPADKARAVGVEL--------VSFDQALATADFISLHMPLN 294 (628)
Q Consensus 227 l~GktiGIIG-lG~IG~~vA~~l~~~--G~~V~~~d~~~~~~~a~~~g~~~--------~sl~ell~~aDvV~l~~Plt 294 (628)
..+|++.|.| .|.||+.+++.|... |++|++.++..........++.. .+++++++.+|+|+.+....
T Consensus 2 ~~~~~ilVtGasG~iG~~l~~~l~~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vi~~a~~~ 80 (253)
T 1xq6_A 2 ANLPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKIGGEADVFIGDITDADSINPAFQGIDALVILTSAV 80 (253)
T ss_dssp CSCCEEEEESTTSHHHHHHHHHHHHTTTTCEEEEEESCHHHHHHTTCCTTEEECCTTSHHHHHHHHTTCSEEEECCCCC
T ss_pred CCCCEEEEEcCCcHHHHHHHHHHHhcCCCcEEEEEEcCCCchhhcCCCeeEEEecCCCHHHHHHHHcCCCEEEEecccc
Confidence 3578999998 699999999999988 89999998763211111112221 13667788899988776543
|
| >3upl_A Oxidoreductase; rossmann fold, NADPH binding; 1.50A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} PDB: 3upy_A* | Back alignment and structure |
|---|
Probab=92.78 E-value=0.15 Score=55.63 Aligned_cols=101 Identities=21% Similarity=0.311 Sum_probs=60.2
Q ss_pred CeEEEEecChhHHHHHHHHHcC-CCEEEE-ECCCCChh--HHHHc-C----------------------Cc-ccCHHHHh
Q 006864 230 KTLAVMGFGKVGSEVARRAKGL-GMNVIA-HDPYAPAD--KARAV-G----------------------VE-LVSFDQAL 281 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~-G~~V~~-~d~~~~~~--~a~~~-g----------------------~~-~~sl~ell 281 (628)
-+|||||+|.||+.+++.++.. ++++.+ +|+..... .+.+. | +. ..++++++
T Consensus 24 IRVGIIGaG~iG~~~~~~l~~~~~veLvAV~D~~~era~~~a~~~yG~~~~~~~~~~~~~i~~a~~~g~~~v~~D~eeLL 103 (446)
T 3upl_A 24 IRIGLIGAGEMGTDIVTQVARMQGIEVGALSARRLPNTFKAIRTAYGDEENAREATTESAMTRAIEAGKIAVTDDNDLIL 103 (446)
T ss_dssp EEEEEECCSHHHHHHHHHHTTSSSEEEEEEECSSTHHHHHHHHHHHSSSTTEEECSSHHHHHHHHHTTCEEEESCHHHHH
T ss_pred eEEEEECChHHHHHHHHHHhhCCCcEEEEEEeCCHHHHHHHHHHhcCCccccccccchhhhhhhhccCCceEECCHHHHh
Confidence 3799999999999999988754 677665 57765221 12222 4 12 23899999
Q ss_pred c--cCCEEEEcCCCCccccccccHHHHhcCCCCcEEE--EcCCCchhcHHHHHHHHhC
Q 006864 282 A--TADFISLHMPLNPTTSKIFNDETFAKMKKGVRIV--NVARGGVIDEEALVRALDS 335 (628)
Q Consensus 282 ~--~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailI--N~aRg~~vde~aL~~aL~~ 335 (628)
+ +.|+|++++|.. +... +-.++.|+.|.-++ |.+- ....-+.|.++-++
T Consensus 104 ~d~dIDaVviaTp~p-~~H~---e~a~~AL~AGKHVv~~nk~l-~~~eg~eL~~~A~e 156 (446)
T 3upl_A 104 SNPLIDVIIDATGIP-EVGA---ETGIAAIRNGKHLVMMNVEA-DVTIGPYLKAQADK 156 (446)
T ss_dssp TCTTCCEEEECSCCH-HHHH---HHHHHHHHTTCEEEECCHHH-HHHHHHHHHHHHHH
T ss_pred cCCCCCEEEEcCCCh-HHHH---HHHHHHHHcCCcEEecCccc-CHHHHHHHHHHHHH
Confidence 7 589999999843 2111 22333455565555 4320 11123455555544
|
| >4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes} | Back alignment and structure |
|---|
Probab=92.77 E-value=0.065 Score=57.51 Aligned_cols=86 Identities=13% Similarity=0.144 Sum_probs=55.3
Q ss_pred CeEEEEecChhHHHHHHHHHcCC---CEEEEECCCCChh--HHHHc------CCc--------ccCHHHHhcc--CCEEE
Q 006864 230 KTLAVMGFGKVGSEVARRAKGLG---MNVIAHDPYAPAD--KARAV------GVE--------LVSFDQALAT--ADFIS 288 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~G---~~V~~~d~~~~~~--~a~~~------g~~--------~~sl~ell~~--aDvV~ 288 (628)
++++|+|.|.||+.+++.|...| .+|.++|+..... .+..+ .+. ..++++++++ +|+|+
T Consensus 2 ~kVlIiGaGgiG~~ia~~L~~~g~~~~~V~v~~r~~~~~~~la~~l~~~~~~~~~~~~~D~~d~~~l~~~l~~~~~DvVi 81 (405)
T 4ina_A 2 AKVLQIGAGGVGGVVAHKMAMNREVFSHITLASRTLSKCQEIAQSIKAKGYGEIDITTVDADSIEELVALINEVKPQIVL 81 (405)
T ss_dssp CEEEEECCSHHHHHHHHHHHTCTTTCCEEEEEESCHHHHHHHHHHHHHTTCCCCEEEECCTTCHHHHHHHHHHHCCSEEE
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCceEEEEEECCHHHHHHHHHHhhhhcCCceEEEEecCCCHHHHHHHHHhhCCCEEE
Confidence 58999999999999999999887 4999998874221 11211 121 1246778887 89999
Q ss_pred EcCCCCccccccccHHHHhcCCCCcEEEEcCC
Q 006864 289 LHMPLNPTTSKIFNDETFAKMKKGVRIVNVAR 320 (628)
Q Consensus 289 l~~Plt~~t~~li~~~~l~~mk~gailIN~aR 320 (628)
.++|... ..-+-+ ..++.|.-+++++.
T Consensus 82 n~ag~~~--~~~v~~---a~l~~g~~vvD~a~ 108 (405)
T 4ina_A 82 NIALPYQ--DLTIME---ACLRTGVPYLDTAN 108 (405)
T ss_dssp ECSCGGG--HHHHHH---HHHHHTCCEEESSC
T ss_pred ECCCccc--ChHHHH---HHHHhCCCEEEecC
Confidence 9987322 111111 22345666777643
|
| >4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A* | Back alignment and structure |
|---|
Probab=92.77 E-value=0.12 Score=52.98 Aligned_cols=66 Identities=20% Similarity=0.173 Sum_probs=46.0
Q ss_pred eeeecCCeEEEEec-ChhHHHHHHHHHcCCCEEEEECCCCChhHHHHcCCcc--------cCHHHHhccCCEEEEcCCCC
Q 006864 224 GVSLVGKTLAVMGF-GKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVEL--------VSFDQALATADFISLHMPLN 294 (628)
Q Consensus 224 g~~l~GktiGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~--------~sl~ell~~aDvV~l~~Plt 294 (628)
.....+|+|.|.|. |.||+.+++.|...|++|++.++.... .++.. .+++++++.+|+|+.+....
T Consensus 14 ~~~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~-----~~~~~~~~Dl~d~~~~~~~~~~~d~vih~A~~~ 88 (347)
T 4id9_A 14 LVPRGSHMILVTGSAGRVGRAVVAALRTQGRTVRGFDLRPSG-----TGGEEVVGSLEDGQALSDAIMGVSAVLHLGAFM 88 (347)
T ss_dssp -------CEEEETTTSHHHHHHHHHHHHTTCCEEEEESSCCS-----SCCSEEESCTTCHHHHHHHHTTCSEEEECCCCC
T ss_pred ccccCCCEEEEECCCChHHHHHHHHHHhCCCEEEEEeCCCCC-----CCccEEecCcCCHHHHHHHHhCCCEEEECCccc
Confidence 35688999999997 999999999999999999999876532 12211 13678888999998776543
|
| >3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT} | Back alignment and structure |
|---|
Probab=92.73 E-value=0.066 Score=53.59 Aligned_cols=62 Identities=19% Similarity=0.290 Sum_probs=45.1
Q ss_pred cCCeEEEEecChhHHHHHHHHHcCCCEEEEECCCCChhHHHHcCCcc--------cCHHHHhcc-CCEEEEcCC
Q 006864 228 VGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVEL--------VSFDQALAT-ADFISLHMP 292 (628)
Q Consensus 228 ~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~--------~sl~ell~~-aDvV~l~~P 292 (628)
.+++|.|.|.|.||+.+++.|...|++|++.++..... ..+++. .+++++++. +|+|+.+..
T Consensus 2 ~~~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~~~~---~~~~~~~~~Dl~d~~~~~~~~~~~~d~vih~a~ 72 (286)
T 3gpi_A 2 SLSKILIAGCGDLGLELARRLTAQGHEVTGLRRSAQPM---PAGVQTLIADVTRPDTLASIVHLRPEILVYCVA 72 (286)
T ss_dssp CCCCEEEECCSHHHHHHHHHHHHTTCCEEEEECTTSCC---CTTCCEEECCTTCGGGCTTGGGGCCSEEEECHH
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCcccc---ccCCceEEccCCChHHHHHhhcCCCCEEEEeCC
Confidence 46899999999999999999999999999998764321 112221 134556666 999876653
|
| >2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A* | Back alignment and structure |
|---|
Probab=92.71 E-value=0.085 Score=57.08 Aligned_cols=109 Identities=18% Similarity=0.180 Sum_probs=71.3
Q ss_pred eecCCeEEEEecChhHHHHHHHHHcCCCEEEEECCCCCh---hHHHHcCCccc---CHHHHhccCCEEEEcCCCCc---c
Q 006864 226 SLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPA---DKARAVGVELV---SFDQALATADFISLHMPLNP---T 296 (628)
Q Consensus 226 ~l~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~---~~a~~~g~~~~---sl~ell~~aDvV~l~~Plt~---~ 296 (628)
++.||++.|||+|..|.+.|+.|+..|++|.++|..... .... .|++.. ...+.+..+|+|++.-...+ +
T Consensus 2 ~~~~~~v~viG~G~~G~~~a~~l~~~G~~v~~~D~~~~~~~~~~l~-~G~~~~~g~~~~~~~~~~d~vV~s~gi~~~~p~ 80 (439)
T 2x5o_A 2 DYQGKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTPPGLDKLP-EAVERHTGSLNDEWLMAADLIVASPGIALAHPS 80 (439)
T ss_dssp CCTTCCEEEECCHHHHHHHHHHHHTTTCCCEEEESSSSCTTGGGSC-TTSCEEESSCCHHHHHTCSEEEECTTSCTTCHH
T ss_pred CCCCCEEEEEeecHHHHHHHHHHHhCCCEEEEEECCCCcchhHHhh-CCCEEEECCCcHHHhccCCEEEeCCCCCCCCHH
Confidence 357899999999999999999999999999999976422 2223 566542 12455668999988643322 1
Q ss_pred c-------cccccHH-HH-hcCCCCcEEEEcCCCchhcHHHHHHHHhC
Q 006864 297 T-------SKIFNDE-TF-AKMKKGVRIVNVARGGVIDEEALVRALDS 335 (628)
Q Consensus 297 t-------~~li~~~-~l-~~mk~gailIN~aRg~~vde~aL~~aL~~ 335 (628)
. ...+.+- .+ ..++...+-|-=+.|+---..-|...|+.
T Consensus 81 ~~~a~~~~~~v~~~~~~~~~~~~~~vI~VTGTnGKTTT~~ml~~iL~~ 128 (439)
T 2x5o_A 81 LSAAADAGIEIVGDIELFCREAQAPIVAITGSNGKSTVTTLVGEMAKA 128 (439)
T ss_dssp HHHHHHTTCEEECHHHHHHHHCCSCEEEEECSSSHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCcEEEHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHHh
Confidence 1 1223331 12 22454455565567888777777777765
|
| >2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A* | Back alignment and structure |
|---|
Probab=92.61 E-value=0.075 Score=55.20 Aligned_cols=35 Identities=26% Similarity=0.489 Sum_probs=32.5
Q ss_pred cCCeEEEEecChhHHHHHHHHHcCCC-EEEEECCCC
Q 006864 228 VGKTLAVMGFGKVGSEVARRAKGLGM-NVIAHDPYA 262 (628)
Q Consensus 228 ~GktiGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~ 262 (628)
.|+++.|+|.|.+|...++.++.+|+ +|++.++..
T Consensus 164 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~ 199 (343)
T 2dq4_A 164 SGKSVLITGAGPIGLMAAMVVRASGAGPILVSDPNP 199 (343)
T ss_dssp TTSCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCH
Confidence 68999999999999999999999999 999999763
|
| >3hn7_A UDP-N-acetylmuramate-L-alanine ligase; ATP-binding, nucleotide-binding, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.65A {Psychrobacter arcticus 273-4} | Back alignment and structure |
|---|
Probab=92.54 E-value=0.16 Score=56.33 Aligned_cols=110 Identities=15% Similarity=0.195 Sum_probs=71.9
Q ss_pred ecCCeEEEEecChhHHH-HHHHHHcCCCEEEEECCCCCh---hHHHHcCCccc---CHHHHhccCCEEEEc--CCCC-cc
Q 006864 227 LVGKTLAVMGFGKVGSE-VARRAKGLGMNVIAHDPYAPA---DKARAVGVELV---SFDQALATADFISLH--MPLN-PT 296 (628)
Q Consensus 227 l~GktiGIIGlG~IG~~-vA~~l~~~G~~V~~~d~~~~~---~~a~~~g~~~~---sl~ell~~aDvV~l~--~Plt-~~ 296 (628)
..++++-|||.|.+|.+ +|+.|+..|++|.++|..... +..++.|++.. ..+.+...+|+|+.. +|.+ |+
T Consensus 17 ~~~~~i~~iGiGg~Gms~lA~~l~~~G~~V~~sD~~~~~~~~~~L~~~gi~~~~G~~~~~~~~~~d~vV~Spgi~~~~p~ 96 (524)
T 3hn7_A 17 FQGMHIHILGICGTFMGSLALLARALGHTVTGSDANIYPPMSTQLEQAGVTIEEGYLIAHLQPAPDLVVVGNAMKRGMDV 96 (524)
T ss_dssp --CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCCTTHHHHHHHTTCEEEESCCGGGGCSCCSEEEECTTCCTTSHH
T ss_pred ecCCEEEEEEecHhhHHHHHHHHHhCCCEEEEECCCCCcHHHHHHHHCCCEEECCCCHHHcCCCCCEEEECCCcCCCCHH
Confidence 45789999999999997 799999999999999976422 23455677643 344555779999885 4422 22
Q ss_pred cc-------ccccHH-HHhc--CCC-CcEEEEcCCCchhcHHHHHHHHhCC
Q 006864 297 TS-------KIFNDE-TFAK--MKK-GVRIVNVARGGVIDEEALVRALDSG 336 (628)
Q Consensus 297 t~-------~li~~~-~l~~--mk~-gailIN~aRg~~vde~aL~~aL~~g 336 (628)
.. .++.+. .|.. ++. ..+-|-=+.|+.--..-+...|+..
T Consensus 97 l~~a~~~gi~v~~~~e~l~~~~~~~~~vIaVTGTnGKTTTt~li~~iL~~~ 147 (524)
T 3hn7_A 97 IEYMLDTGLRYTSGPQFLSEQVLQSRHVIAVAGTHGKTTTTTMLAWILHYA 147 (524)
T ss_dssp HHHHHHHTCCEEEHHHHHHHHTGGGSEEEEEECSSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHCCCcEEEHHHHHHHHHhccCcEEEEECCCCHHHHHHHHHHHHHHc
Confidence 11 133333 3333 332 2455555788888888777777653
|
| >1s6y_A 6-phospho-beta-glucosidase; hydrolase, structural genomics, PSI, protein structure initi midwest center for structural genomics; 2.31A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.2 | Back alignment and structure |
|---|
Probab=92.48 E-value=0.22 Score=54.33 Aligned_cols=113 Identities=18% Similarity=0.191 Sum_probs=72.9
Q ss_pred CeEEEEecChh-HHHHHHHHHc----C-CCEEEEECCCC--ChhH-----HH----HcCC----cc-cCHHHHhccCCEE
Q 006864 230 KTLAVMGFGKV-GSEVARRAKG----L-GMNVIAHDPYA--PADK-----AR----AVGV----EL-VSFDQALATADFI 287 (628)
Q Consensus 230 ktiGIIGlG~I-G~~vA~~l~~----~-G~~V~~~d~~~--~~~~-----a~----~~g~----~~-~sl~ell~~aDvV 287 (628)
++|+|||.|.. |..++..|.. + +.+|..||... .... .. ..+. .. .++++.++.||+|
T Consensus 8 ~KIaVIGaGsv~~~al~~~L~~~~~~l~~~ev~L~Di~~~~e~~~~~~~~~~~~~~~~~~~~~i~~t~D~~eal~gAD~V 87 (450)
T 1s6y_A 8 LKIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMVEKAGVPIEIHLTLDRRRALDGADFV 87 (450)
T ss_dssp EEEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTTCSEE
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCCCCCCEEEEEEcCCChHHHHHHHHHHHHHHhhcCCCcEEEEeCCHHHHhCCCCEE
Confidence 58999999998 8776655543 3 56899999865 2111 11 1121 12 3788999999999
Q ss_pred EEcCCCCcc---cc--------ccc---------------c-------HHHHhcCCCCcEEEEcCCCchhcHHHHHHHHh
Q 006864 288 SLHMPLNPT---TS--------KIF---------------N-------DETFAKMKKGVRIVNVARGGVIDEEALVRALD 334 (628)
Q Consensus 288 ~l~~Plt~~---t~--------~li---------------~-------~~~l~~mk~gailIN~aRg~~vde~aL~~aL~ 334 (628)
++++|.... ++ +++ + .+.+....|+++++|.+-.-=+-..++.+...
T Consensus 88 Vitagv~~~~~~~rd~~ip~~~g~~~~et~G~ggi~~~~rni~i~~~i~~~i~~~~P~a~ii~~tNPvdivT~a~~k~~p 167 (450)
T 1s6y_A 88 TTQFRVGGLEARAKDERIPLKYGVIGQETNGPGGLFKGLRTIPVILDIIRDMEELCPDAWLINFTNPAGMVTEAVLRYTK 167 (450)
T ss_dssp EECCCTTHHHHHHHHHHTGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECSSSHHHHHHHHHHHCC
T ss_pred EEcCCCCCCcchhhhhhhhhhcCcccccccccchHHHHhhhHHHHHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHHhCC
Confidence 999995321 11 110 0 12344457899999998766666677777654
Q ss_pred CCCeeEEE
Q 006864 335 SGVVAQAA 342 (628)
Q Consensus 335 ~g~i~ga~ 342 (628)
..++.|.+
T Consensus 168 ~~rViG~c 175 (450)
T 1s6y_A 168 QEKVVGLC 175 (450)
T ss_dssp CCCEEECC
T ss_pred CCCEEEeC
Confidence 45777753
|
| >2yv1_A Succinyl-COA ligase [ADP-forming] subunit alpha; COA-binding domain, structural genomics, NPPSFA; 1.70A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=92.47 E-value=0.086 Score=54.26 Aligned_cols=102 Identities=20% Similarity=0.244 Sum_probs=64.0
Q ss_pred CeEEEEec-ChhHHHHHHHHHcCCCEE-EEECCCCChhHHHHcCCccc-CHHHHhc--cCCEEEEcCCCCccccccccHH
Q 006864 230 KTLAVMGF-GKVGSEVARRAKGLGMNV-IAHDPYAPADKARAVGVELV-SFDQALA--TADFISLHMPLNPTTSKIFNDE 304 (628)
Q Consensus 230 ktiGIIGl-G~IG~~vA~~l~~~G~~V-~~~d~~~~~~~a~~~g~~~~-sl~ell~--~aDvV~l~~Plt~~t~~li~~~ 304 (628)
.++.|+|. |++|+.+++.++..|+++ ...+|..... .-.|+... +++++.+ .+|++++++|-. .+...+ ++
T Consensus 14 ~~v~V~Gasg~~G~~~~~~l~~~g~~~V~~VnP~~~g~--~i~G~~vy~sl~el~~~~~~Dv~ii~vp~~-~~~~~v-~e 89 (294)
T 2yv1_A 14 TKAIVQGITGRQGSFHTKKMLECGTKIVGGVTPGKGGQ--NVHGVPVFDTVKEAVKETDANASVIFVPAP-FAKDAV-FE 89 (294)
T ss_dssp CCEEEETTTSHHHHHHHHHHHHTTCCEEEEECTTCTTC--EETTEEEESSHHHHHHHHCCCEEEECCCHH-HHHHHH-HH
T ss_pred CEEEEECCCCCHHHHHHHHHHhCCCeEEEEeCCCCCCc--eECCEeeeCCHHHHhhcCCCCEEEEccCHH-HHHHHH-HH
Confidence 35778899 999999999999889873 3567753211 11465543 7999998 899999999822 222222 22
Q ss_pred HHhcCCCCcE-EEEcCCC-chhcHHHHHHHHhCCCe
Q 006864 305 TFAKMKKGVR-IVNVARG-GVIDEEALVRALDSGVV 338 (628)
Q Consensus 305 ~l~~mk~gai-lIN~aRg-~~vde~aL~~aL~~g~i 338 (628)
..+ .|.- +|..+.| ...+++.|.++.++..+
T Consensus 90 a~~---~Gi~~vVi~t~G~~~~~~~~l~~~A~~~gi 122 (294)
T 2yv1_A 90 AID---AGIELIVVITEHIPVHDTMEFVNYAEDVGV 122 (294)
T ss_dssp HHH---TTCSEEEECCSCCCHHHHHHHHHHHHHHTC
T ss_pred HHH---CCCCEEEEECCCCCHHHHHHHHHHHHHcCC
Confidence 232 3333 4444444 22456678887776444
|
| >3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae} | Back alignment and structure |
|---|
Probab=92.47 E-value=0.2 Score=51.43 Aligned_cols=87 Identities=18% Similarity=0.185 Sum_probs=55.7
Q ss_pred CeEEEEe-cChhHHHHHHHHH-cCCCEEEE-ECCCCCh----hHHH-----HcCCccc-CHHHHhccCCEEEEcCCCCcc
Q 006864 230 KTLAVMG-FGKVGSEVARRAK-GLGMNVIA-HDPYAPA----DKAR-----AVGVELV-SFDQALATADFISLHMPLNPT 296 (628)
Q Consensus 230 ktiGIIG-lG~IG~~vA~~l~-~~G~~V~~-~d~~~~~----~~a~-----~~g~~~~-sl~ell~~aDvV~l~~Plt~~ 296 (628)
.+|+|+| +|+||+.+++.+. .-++++.+ +|+..+. +... ..|+... ++++++.++|+|+-..+ ++
T Consensus 22 irV~V~Ga~GrMGr~i~~~v~~~~~~eLvg~vd~~~~~~~G~d~gel~G~~~~gv~v~~dl~~ll~~aDVvIDFT~--p~ 99 (288)
T 3ijp_A 22 MRLTVVGANGRMGRELITAIQRRKDVELCAVLVRKGSSFVDKDASILIGSDFLGVRITDDPESAFSNTEGILDFSQ--PQ 99 (288)
T ss_dssp EEEEESSTTSHHHHHHHHHHHTCSSEEEEEEBCCTTCTTTTSBGGGGTTCSCCSCBCBSCHHHHTTSCSEEEECSC--HH
T ss_pred eEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccccchHHhhccCcCCceeeCCHHHHhcCCCEEEEcCC--HH
Confidence 4899999 9999999999987 45788765 5765321 1111 2344443 89999999999987764 32
Q ss_pred ccccccHHHHhcCCCCcEEEEcCCC
Q 006864 297 TSKIFNDETFAKMKKGVRIVNVARG 321 (628)
Q Consensus 297 t~~li~~~~l~~mk~gailIN~aRg 321 (628)
.. .+..-..++.|.-+|-...|
T Consensus 100 a~---~~~~~~~l~~Gv~vViGTTG 121 (288)
T 3ijp_A 100 AS---VLYANYAAQKSLIHIIGTTG 121 (288)
T ss_dssp HH---HHHHHHHHHHTCEEEECCCC
T ss_pred HH---HHHHHHHHHcCCCEEEECCC
Confidence 21 11112224566667655555
|
| >2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A | Back alignment and structure |
|---|
Probab=92.44 E-value=0.12 Score=50.09 Aligned_cols=68 Identities=15% Similarity=0.159 Sum_probs=47.6
Q ss_pred ecCCeEEEEe-cChhHHHHHHHHHcCCC--EEEEECCCCChh-HHHHcCCc--------ccCHHHHhccCCEEEEcCCCC
Q 006864 227 LVGKTLAVMG-FGKVGSEVARRAKGLGM--NVIAHDPYAPAD-KARAVGVE--------LVSFDQALATADFISLHMPLN 294 (628)
Q Consensus 227 l~GktiGIIG-lG~IG~~vA~~l~~~G~--~V~~~d~~~~~~-~a~~~g~~--------~~sl~ell~~aDvV~l~~Plt 294 (628)
+.||++.|.| .|.||+.+++.|...|. +|++.++..... .....++. ..+++++++.+|+|+.+....
T Consensus 16 m~~~~vlVtGasg~iG~~l~~~L~~~G~~~~V~~~~r~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vi~~ag~~ 95 (242)
T 2bka_A 16 MQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEAYKNVNQEVVDFEKLDDYASAFQGHDVGFCCLGTT 95 (242)
T ss_dssp HTCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCSGGGGGCEEEECCGGGGGGGGGGGSSCSEEEECCCCC
T ss_pred hcCCeEEEECCCcHHHHHHHHHHHcCCCCCEEEEEEcCCCCccccccCCceEEecCcCCHHHHHHHhcCCCEEEECCCcc
Confidence 5679999999 69999999999999999 999988764211 10111221 113556777889888877643
|
| >3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A* | Back alignment and structure |
|---|
Probab=92.39 E-value=0.31 Score=51.24 Aligned_cols=47 Identities=19% Similarity=0.031 Sum_probs=37.3
Q ss_pred ecCCeEEEEec-ChhHHHHHHHHHcCCCEEEEECCCCChhHHHHcCCc
Q 006864 227 LVGKTLAVMGF-GKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVE 273 (628)
Q Consensus 227 l~GktiGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~ 273 (628)
-.|.++.|+|. |.+|...++.++.+|++|++.......+.++++|+.
T Consensus 163 ~~g~~VlV~Ga~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~lGa~ 210 (371)
T 3gqv_A 163 SKPVYVLVYGGSTATATVTMQMLRLSGYIPIATCSPHNFDLAKSRGAE 210 (371)
T ss_dssp SSCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECGGGHHHHHHTTCS
T ss_pred CCCcEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCHHHHHHHHHcCCc
Confidence 46899999999 899999999999999999887522234556677753
|
| >1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=92.37 E-value=0.15 Score=53.92 Aligned_cols=45 Identities=31% Similarity=0.372 Sum_probs=36.8
Q ss_pred cCCeEEEEecChhHHHHHHHHHcCC-CEEEEECCCC-ChhHHHHcCC
Q 006864 228 VGKTLAVMGFGKVGSEVARRAKGLG-MNVIAHDPYA-PADKARAVGV 272 (628)
Q Consensus 228 ~GktiGIIGlG~IG~~vA~~l~~~G-~~V~~~d~~~-~~~~a~~~g~ 272 (628)
.|+++.|+|.|.+|...++.++.+| .+|++.++.. ..+.++++|+
T Consensus 195 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~lGa 241 (380)
T 1vj0_A 195 AGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIGA 241 (380)
T ss_dssp BTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHTTC
T ss_pred CCCEEEEECcCHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHHHcCC
Confidence 4789999999999999999999999 6999998764 2344555664
|
| >1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=92.34 E-value=0.19 Score=50.58 Aligned_cols=64 Identities=23% Similarity=0.365 Sum_probs=46.8
Q ss_pred CCeEEEEec-ChhHHHHHHHHHcCCCEEEEECCCCC----hhHH------HHcCCccc--------CHHHHhccCCEEEE
Q 006864 229 GKTLAVMGF-GKVGSEVARRAKGLGMNVIAHDPYAP----ADKA------RAVGVELV--------SFDQALATADFISL 289 (628)
Q Consensus 229 GktiGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~~----~~~a------~~~g~~~~--------sl~ell~~aDvV~l 289 (628)
.++|.|.|. |.||+.+++.|...|++|++.++... .+.. ...+++.+ ++.++++.+|+|+.
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~l~~~~~~~d~vi~ 83 (308)
T 1qyc_A 4 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLESFKASGANIVHGSIDDHASLVEAVKNVDVVIS 83 (308)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCCTTTTHHHHHHHHHHHTTTCEEECCCTTCHHHHHHHHHTCSEEEE
T ss_pred CCEEEEEcCCcHHHHHHHHHHHhCCCCEEEEECCcccccCHHHHHHHHHHHhCCCEEEEeccCCHHHHHHHHcCCCEEEE
Confidence 478999995 99999999999999999999987642 1111 12344322 35677888998877
Q ss_pred cCC
Q 006864 290 HMP 292 (628)
Q Consensus 290 ~~P 292 (628)
+++
T Consensus 84 ~a~ 86 (308)
T 1qyc_A 84 TVG 86 (308)
T ss_dssp CCC
T ss_pred CCc
Confidence 765
|
| >1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=92.28 E-value=0.098 Score=53.82 Aligned_cols=35 Identities=26% Similarity=0.262 Sum_probs=31.9
Q ss_pred cCCeEEEEe-cChhHHHHHHHHHcCCCEEEEECCCC
Q 006864 228 VGKTLAVMG-FGKVGSEVARRAKGLGMNVIAHDPYA 262 (628)
Q Consensus 228 ~GktiGIIG-lG~IG~~vA~~l~~~G~~V~~~d~~~ 262 (628)
.|+++.|+| .|.||..+++.++..|++|++.++..
T Consensus 140 ~g~~vlV~Ga~ggiG~~~~~~a~~~G~~V~~~~~~~ 175 (327)
T 1qor_A 140 PDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTA 175 (327)
T ss_dssp TTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 478999999 79999999999999999999998763
|
| >3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=92.28 E-value=0.22 Score=51.73 Aligned_cols=84 Identities=18% Similarity=0.200 Sum_probs=54.5
Q ss_pred CeEEEE-ecChhHHHHHHHHHcCCCEEEEECCCC-ChhHHHHcCCccc------CHHHHh------ccCCEEEEcCCCCc
Q 006864 230 KTLAVM-GFGKVGSEVARRAKGLGMNVIAHDPYA-PADKARAVGVELV------SFDQAL------ATADFISLHMPLNP 295 (628)
Q Consensus 230 ktiGII-GlG~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~g~~~~------sl~ell------~~aDvV~l~~Plt~ 295 (628)
+++.|. |.|.||...++.++.+|++|++.++.. ..+.++++|+..+ ++.+.+ ...|+|+-++.. +
T Consensus 166 ~~vli~gg~g~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~v~~~~~~~g~D~vid~~g~-~ 244 (349)
T 3pi7_A 166 KAFVMTAGASQLCKLIIGLAKEEGFRPIVTVRRDEQIALLKDIGAAHVLNEKAPDFEATLREVMKAEQPRIFLDAVTG-P 244 (349)
T ss_dssp SEEEESSTTSHHHHHHHHHHHHHTCEEEEEESCGGGHHHHHHHTCSEEEETTSTTHHHHHHHHHHHHCCCEEEESSCH-H
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCCEEEECCcHHHHHHHHHHhcCCCCcEEEECCCC-h
Confidence 566665 999999999999999999999998764 3455666665321 222211 246777666541 1
Q ss_pred cccccccHHHHhcCCCCcEEEEcC
Q 006864 296 TTSKIFNDETFAKMKKGVRIVNVA 319 (628)
Q Consensus 296 ~t~~li~~~~l~~mk~gailIN~a 319 (628)
. + ...+..|+++..++.++
T Consensus 245 ---~-~-~~~~~~l~~~G~iv~~G 263 (349)
T 3pi7_A 245 ---L-A-SAIFNAMPKRARWIIYG 263 (349)
T ss_dssp ---H-H-HHHHHHSCTTCEEEECC
T ss_pred ---h-H-HHHHhhhcCCCEEEEEe
Confidence 1 1 44566677777777665
|
| >3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A* | Back alignment and structure |
|---|
Probab=92.26 E-value=0.17 Score=54.13 Aligned_cols=67 Identities=22% Similarity=0.321 Sum_probs=45.8
Q ss_pred cceeeecCCeEEEEecChhHHHHHHHHHcCCCEEEEECCCCC--hhHHHHc-CC---ccc---CHHHHhccCCEEEE
Q 006864 222 YVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAP--ADKARAV-GV---ELV---SFDQALATADFISL 289 (628)
Q Consensus 222 ~~g~~l~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~--~~~a~~~-g~---~~~---sl~ell~~aDvV~l 289 (628)
|++..+.+++|+|+|-|..|+.+++.++.+|++|+++| +.. ..+.... .. .+. .+.++++++|+|+.
T Consensus 17 ~~~~mm~~~~I~ilGgG~lg~~l~~aa~~lG~~v~~~d-~~~~p~~~~ad~~~~~~~~~~d~~~l~~~a~~~d~i~~ 92 (403)
T 3k5i_A 17 FQGHMWNSRKVGVLGGGQLGRMLVESANRLNIQVNVLD-ADNSPAKQISAHDGHVTGSFKEREAVRQLAKTCDVVTA 92 (403)
T ss_dssp ----CCSCCEEEEECCSHHHHHHHHHHHHHTCEEEEEE-STTCTTGGGCCSSCCEESCTTCHHHHHHHHTTCSEEEE
T ss_pred EeccCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEE-CCCCcHHHhccccceeecCCCCHHHHHHHHHhCCEEEE
Confidence 44555678999999999999999999999999999998 432 1111110 11 111 26678889998865
|
| >2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria} | Back alignment and structure |
|---|
Probab=92.21 E-value=0.21 Score=48.07 Aligned_cols=47 Identities=13% Similarity=0.158 Sum_probs=36.9
Q ss_pred cEEEEeccCCCCchhhHHhhhhcCCccccceEEeeeecCccEEEEEEeC
Q 006864 559 NLILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVD 607 (628)
Q Consensus 559 ~~Llv~~~D~PGvIa~V~~iL~~~~INIa~m~v~R~~~gg~Al~~i~vD 607 (628)
..|.+.-+|+||++++|++.|+++|.||-..+... ..++-++ .+.++
T Consensus 6 ~~ltv~~~DrpGiva~vs~~La~~g~NI~da~q~~-~~~~f~m-~~~v~ 52 (195)
T 2nyi_A 6 FVVSVAGSDRVGIVHDFSWALKNISANVESSRMAC-LGGDFAM-IVLVS 52 (195)
T ss_dssp EEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEE-ETTEEEE-EEEEE
T ss_pred EEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEEeEE-ECCeEEE-EEEEE
Confidence 35666789999999999999999999999999985 3444444 45554
|
| >2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A* | Back alignment and structure |
|---|
Probab=92.21 E-value=0.069 Score=55.36 Aligned_cols=35 Identities=31% Similarity=0.352 Sum_probs=32.0
Q ss_pred cCCeEEEEec-ChhHHHHHHHHHcCCCEEEEECCCC
Q 006864 228 VGKTLAVMGF-GKVGSEVARRAKGLGMNVIAHDPYA 262 (628)
Q Consensus 228 ~GktiGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~ 262 (628)
.|+++.|+|. |.||..+++.++.+|++|++.++..
T Consensus 155 ~g~~vlI~Ga~g~iG~~~~~~a~~~G~~V~~~~~~~ 190 (345)
T 2j3h_A 155 EGETVYVSAASGAVGQLVGQLAKMMGCYVVGSAGSK 190 (345)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 4789999997 9999999999999999999998763
|
| >3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A* | Back alignment and structure |
|---|
Probab=92.18 E-value=0.29 Score=50.76 Aligned_cols=99 Identities=19% Similarity=0.223 Sum_probs=62.4
Q ss_pred CeEEEEe-cChhHHHHHHHHHc---CCCEEEEECCCCC-hhHHHHc-CC----ccc-----CHHHHhccCCEEEEcCCCC
Q 006864 230 KTLAVMG-FGKVGSEVARRAKG---LGMNVIAHDPYAP-ADKARAV-GV----ELV-----SFDQALATADFISLHMPLN 294 (628)
Q Consensus 230 ktiGIIG-lG~IG~~vA~~l~~---~G~~V~~~d~~~~-~~~a~~~-g~----~~~-----sl~ell~~aDvV~l~~Plt 294 (628)
++|+||| .|.+|+++|..|.. +.-++..+|.... ...+.++ .. ... +..+.++.||+|+++.+..
T Consensus 1 mKV~IiGAaG~VG~~~a~~L~~~~~~~~el~L~Di~~~~~G~a~Dl~~~~~~~~v~~~~~~~~~~~~~~aDivii~ag~~ 80 (312)
T 3hhp_A 1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDATPALEGADVVLISAGVA 80 (312)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHSCTTEEEEEECSSTTHHHHHHHHHTSCSSEEEEEECSSCCHHHHTTCSEEEECCSCS
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCCceEEEEecCCCchhHHHHhhCCCCCceEEEecCCCcHHHhCCCCEEEEeCCCC
Confidence 4799999 99999999999964 5568999997641 1111111 11 111 3568899999999988643
Q ss_pred c---cccc-cc--cH-------HHHhcCCCCcEEEEcCCCchhcHHHHH
Q 006864 295 P---TTSK-IF--ND-------ETFAKMKKGVRIVNVARGGVIDEEALV 330 (628)
Q Consensus 295 ~---~t~~-li--~~-------~~l~~mk~gailIN~aRg~~vde~aL~ 330 (628)
. +++. ++ |. +.+....|.+++++++ ..+|.-..+
T Consensus 81 rkpG~~R~dll~~N~~I~~~i~~~i~~~~p~a~vlvvt--NPvd~~t~~ 127 (312)
T 3hhp_A 81 RKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIIT--NPVNTTVAI 127 (312)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECS--SCHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEec--CcchhHHHH
Confidence 2 1221 11 11 1233346788999995 566655444
|
| >3dr3_A N-acetyl-gamma-glutamyl-phosphate reductase; csgid target, ARGC, essential gene, amino-acid biosynthesis, arginine biosynthesis, cytoplasm; HET: MLT; 2.00A {Shigella flexneri} PDB: 2g17_A | Back alignment and structure |
|---|
Probab=92.17 E-value=0.083 Score=55.53 Aligned_cols=86 Identities=15% Similarity=0.173 Sum_probs=53.3
Q ss_pred CeEEEEe-cChhHHHHHHHHHc-CCCEEEEECCCC---C--hhHHH----HcC---Cccc---CHHHHhccCCEEEEcCC
Q 006864 230 KTLAVMG-FGKVGSEVARRAKG-LGMNVIAHDPYA---P--ADKAR----AVG---VELV---SFDQALATADFISLHMP 292 (628)
Q Consensus 230 ktiGIIG-lG~IG~~vA~~l~~-~G~~V~~~d~~~---~--~~~a~----~~g---~~~~---sl~ell~~aDvV~l~~P 292 (628)
.+++|+| .|.+|+++.++|.. -++++....... . ..... -.+ .... +.+++++++|+|++|+|
T Consensus 5 ~kv~IvGatG~vG~~l~~~L~~~p~~el~~l~s~~~~~saGk~~~~~~p~~~~~~~~~v~~~~~~~~~~~~~Dvvf~a~p 84 (337)
T 3dr3_A 5 LNTLIVGASGYAGAELVTYVNRHPHMNITALTVSAQSNDAGKLISDLHPQLKGIVELPLQPMSDISEFSPGVDVVFLATA 84 (337)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHCTTEEEEEEEEETTCTTTTSBHHHHCGGGTTTCCCBEEEESSGGGTCTTCSEEEECSC
T ss_pred eEEEEECCCChHHHHHHHHHHhCCCCcEEEEEecCchhhcCCchHHhCccccCccceeEeccCCHHHHhcCCCEEEECCC
Confidence 4799999 69999999999987 456776653221 1 11110 011 1211 44555589999999998
Q ss_pred CCccccccccHHHH-hcCCCCcEEEEcCCC
Q 006864 293 LNPTTSKIFNDETF-AKMKKGVRIVNVARG 321 (628)
Q Consensus 293 lt~~t~~li~~~~l-~~mk~gailIN~aRg 321 (628)
-.. ..+.. ..++.|+.+|+.+.-
T Consensus 85 ~~~------s~~~~~~~~~~g~~vIDlSa~ 108 (337)
T 3dr3_A 85 HEV------SHDLAPQFLEAGCVVFDLSGA 108 (337)
T ss_dssp HHH------HHHHHHHHHHTTCEEEECSST
T ss_pred hHH------HHHHHHHHHHCCCEEEEcCCc
Confidence 322 12221 125779999998743
|
| >2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A* | Back alignment and structure |
|---|
Probab=92.16 E-value=0.13 Score=53.82 Aligned_cols=46 Identities=15% Similarity=0.122 Sum_probs=37.5
Q ss_pred cCCeEEEEecChhHHHH-HHHH-HcCCCE-EEEECCCCC----hhHHHHcCCc
Q 006864 228 VGKTLAVMGFGKVGSEV-ARRA-KGLGMN-VIAHDPYAP----ADKARAVGVE 273 (628)
Q Consensus 228 ~GktiGIIGlG~IG~~v-A~~l-~~~G~~-V~~~d~~~~----~~~a~~~g~~ 273 (628)
.+.++.|+|.|.||... ++.+ +.+|.+ |++.++... .+.++++|+.
T Consensus 172 ~~~~VlV~GaG~vG~~a~iqla~k~~Ga~~Vi~~~~~~~~~~~~~~~~~lGa~ 224 (357)
T 2b5w_A 172 DPSSAFVLGNGSLGLLTLAMLKVDDKGYENLYCLGRRDRPDPTIDIIEELDAT 224 (357)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHCTTCCCEEEEEECCCSSCHHHHHHHHTTCE
T ss_pred CCCEEEEECCCHHHHHHHHHHHHHHcCCcEEEEEeCCcccHHHHHHHHHcCCc
Confidence 34899999999999999 9999 999997 999988654 3455666653
|
| >3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A* | Back alignment and structure |
|---|
Probab=92.14 E-value=0.13 Score=55.95 Aligned_cols=63 Identities=19% Similarity=0.187 Sum_probs=49.0
Q ss_pred cCCeEEEEecC----------hhHHHHHHHHHcCCCEEEEECCCCChhHHHHcCCcc-cCHHHHhccCCEEEEcCC
Q 006864 228 VGKTLAVMGFG----------KVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVEL-VSFDQALATADFISLHMP 292 (628)
Q Consensus 228 ~GktiGIIGlG----------~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~-~sl~ell~~aDvV~l~~P 292 (628)
.|++|+|+|+- .-...++++|++.|.+|.+|||..+... -.+... .++++.++.||+|++.-.
T Consensus 331 ~~~~v~vlGlafK~~tdD~R~Sp~~~i~~~L~~~G~~V~~~DP~~~~~~--~~~~~~~~~~~~~~~~aD~iv~~~~ 404 (432)
T 3pid_A 331 KPKVVGVYRLIMKSGSDNFRASSIQGIMKRIKAKGIPVIIYEPVMQEDE--FFNSRVVRDLNAFKQEADVIISNRM 404 (432)
T ss_dssp CCSSEEEECC-----------CHHHHHHHHHHHTTCCEEEECTTCCSSE--ETTEEECCCHHHHHHHCSEEECSSC
T ss_pred cCCEEEEEeeEeCCCCcchhcChHHHHHHHHHhcCCEEEEECCCCChhh--cCCceEECCHHHHHhcCCEEEECCC
Confidence 48999999985 2368899999999999999999985432 123333 389999999999987654
|
| >3nv9_A Malic enzyme; rossmann fold, oxidoreductase; 2.25A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=92.14 E-value=1.1 Score=48.86 Aligned_cols=177 Identities=15% Similarity=0.091 Sum_probs=115.4
Q ss_pred CceEEcCCCCChhhHHHHHHHHHHHHHHchhHHHHHHHcCcccccccceeeecCCeEEEEecChhHHHHHHHHHcCCC--
Q 006864 176 GCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGM-- 253 (628)
Q Consensus 176 GI~V~n~p~~~~~avAE~~l~l~L~~~R~i~~~~~~~~~g~W~~~~~~g~~l~GktiGIIGlG~IG~~vA~~l~~~G~-- 253 (628)
.|+|.|.- -.-+|=-+++-+++.+| ..|..|...++.|.|.|.-|-.+|+.+...|+
T Consensus 187 ~ipvFnDD---~qGTA~V~lAgllnAlk------------------i~gk~l~d~riV~~GAGaAGigia~ll~~~G~~~ 245 (487)
T 3nv9_A 187 DIPVWHDD---QQGTASVTLAGLLNALK------------------LVKKDIHECRMVFIGAGSSNTTCLRLIVTAGADP 245 (487)
T ss_dssp SSCEEETT---THHHHHHHHHHHHHHHH------------------HHTCCGGGCCEEEECCSHHHHHHHHHHHHTTCCG
T ss_pred cCCccccc---cchHHHHHHHHHHHHHH------------------HhCCChhhcEEEEECCCHHHHHHHHHHHHcCCCc
Confidence 79999985 33455556777777766 24677888999999999999999999999998
Q ss_pred -EEEEECCCC----C-hhH------------HHHcCC-cccCHHHHhccCCEEEEcCCCCccccccccHHHHhcCCCCcE
Q 006864 254 -NVIAHDPYA----P-ADK------------ARAVGV-ELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVR 314 (628)
Q Consensus 254 -~V~~~d~~~----~-~~~------------a~~~g~-~~~sl~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gai 314 (628)
+++.+|+.- . .+. +....- ...+|.|+++.+|+++=.- .. .-+.+.++.++.|.+..+
T Consensus 246 ~~i~l~D~~Gli~~~R~~l~~~~~~~~k~~~A~~~n~~~~~~L~eav~~adVlIG~S-~~--~pg~ft~e~V~~Ma~~PI 322 (487)
T 3nv9_A 246 KKIVMFDSKGSLHNGREDIKKDTRFYRKWEICETTNPSKFGSIAEACVGADVLISLS-TP--GPGVVKAEWIKSMGEKPI 322 (487)
T ss_dssp GGEEEEETTEECCTTCHHHHHCGGGHHHHHHHHHSCTTCCCSHHHHHTTCSEEEECC-CS--SCCCCCHHHHHTSCSSCE
T ss_pred ccEEEEeccccccCCcchhhhhcccHHHHHHHHhcccccCCCHHHHHhcCCEEEEec-cc--CCCCCCHHHHHhhcCCCE
Confidence 799988641 1 110 111111 2347999999999775432 11 147899999999999999
Q ss_pred EEEcCCCch-hcHHHHHHHHhCCC-eeEEEeeccCCCCCCCCCccccCCcEEEcCCCC---------CCcHHHHHHHHHH
Q 006864 315 IVNVARGGV-IDEEALVRALDSGV-VAQAALDVFTEEPPAKDSKLVQHENVTVTPHLG---------ASTKEAQEGVAIE 383 (628)
Q Consensus 315 lIN~aRg~~-vde~aL~~aL~~g~-i~ga~lDV~~~EP~~~~~~L~~~~nvilTPHig---------~~T~ea~~~~~~~ 383 (628)
|.-.+.... +..++ +.+.|+ |.+.|- -+.|. +..|+++-|-++ .-|++.+...+..
T Consensus 323 IFaLSNPtpEi~pe~---A~~~G~aIvATGr-----sd~Pn-----Q~NN~liFPGI~~Gal~~~A~~Itd~M~~AAA~A 389 (487)
T 3nv9_A 323 VFCCANPVPEIYPYE---AKEAGAYIVATGR-----GDFPN-----QVNNSVGFPGILKGALIVRARKITDNMAIAASRA 389 (487)
T ss_dssp EEECCSSSCSSCHHH---HHHTTCSEEEESC-----TTSSS-----BCCGGGTHHHHHHHHHHTTCSSCCHHHHHHHHHH
T ss_pred EEECCCCCccCCHHH---HHHhCCEEEEECC-----CCCcc-----cCcceeEcchhhHHHHHcCCcccCHHHHHHHHHH
Confidence 999987553 12222 233564 444431 12221 345676666544 3466766665555
Q ss_pred HHHHHH
Q 006864 384 IAEAVV 389 (628)
Q Consensus 384 ~~~~i~ 389 (628)
+++-+.
T Consensus 390 LA~~v~ 395 (487)
T 3nv9_A 390 LAEFAE 395 (487)
T ss_dssp HHHHHH
T ss_pred HHhhCC
Confidence 555443
|
| >3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406} | Back alignment and structure |
|---|
Probab=92.03 E-value=0.12 Score=46.26 Aligned_cols=97 Identities=18% Similarity=0.166 Sum_probs=64.3
Q ss_pred CeEEEEec----ChhHHHHHHHHHcCCCEEEEECCCCChhHHHHcCCcc-cCHHHHhccCCEEEEcCCCCccccccccHH
Q 006864 230 KTLAVMGF----GKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVEL-VSFDQALATADFISLHMPLNPTTSKIFNDE 304 (628)
Q Consensus 230 ktiGIIGl----G~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~-~sl~ell~~aDvV~l~~Plt~~t~~li~~~ 304 (628)
|+|+|||. |+.|..+.+.|+..|++|+-.+|.... -.|... -++.++-. -|++++++|- +.+..++. +
T Consensus 5 ~siAVVGaS~~~~~~g~~v~~~L~~~g~~V~pVnP~~~~----i~G~~~y~sl~dlp~-vDlavi~~p~-~~v~~~v~-e 77 (122)
T 3ff4_A 5 KKTLILGATPETNRYAYLAAERLKSHGHEFIPVGRKKGE----VLGKTIINERPVIEG-VDTVTLYINP-QNQLSEYN-Y 77 (122)
T ss_dssp CCEEEETCCSCTTSHHHHHHHHHHHHTCCEEEESSSCSE----ETTEECBCSCCCCTT-CCEEEECSCH-HHHGGGHH-H
T ss_pred CEEEEEccCCCCCCHHHHHHHHHHHCCCeEEEECCCCCc----CCCeeccCChHHCCC-CCEEEEEeCH-HHHHHHHH-H
Confidence 68999998 579999999999999999999987422 134443 36777777 8999999992 33444443 2
Q ss_pred HHhcCCCCcEEEEcCCCchhcHHHHHHHHhCCCe
Q 006864 305 TFAKMKKGVRIVNVARGGVIDEEALVRALDSGVV 338 (628)
Q Consensus 305 ~l~~mk~gailIN~aRg~~vde~aL~~aL~~g~i 338 (628)
.. .+...++++..+ ..+ +.+.+..++..+
T Consensus 78 ~~-~~g~k~v~~~~G---~~~-~e~~~~a~~~Gi 106 (122)
T 3ff4_A 78 IL-SLKPKRVIFNPG---TEN-EELEEILSENGI 106 (122)
T ss_dssp HH-HHCCSEEEECTT---CCC-HHHHHHHHHTTC
T ss_pred HH-hcCCCEEEECCC---CCh-HHHHHHHHHcCC
Confidence 22 234446666543 334 455555555444
|
| >2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A | Back alignment and structure |
|---|
Probab=91.99 E-value=0.22 Score=50.00 Aligned_cols=64 Identities=27% Similarity=0.228 Sum_probs=47.9
Q ss_pred CCeEEEEec-ChhHHHHHHHHHcCC-CEEEEECCCCChhH---HHHcCCccc--------CHHHHhccCCEEEEcCC
Q 006864 229 GKTLAVMGF-GKVGSEVARRAKGLG-MNVIAHDPYAPADK---ARAVGVELV--------SFDQALATADFISLHMP 292 (628)
Q Consensus 229 GktiGIIGl-G~IG~~vA~~l~~~G-~~V~~~d~~~~~~~---a~~~g~~~~--------sl~ell~~aDvV~l~~P 292 (628)
.|+|.|.|. |.||+.+++.|...| ++|.+.++...... ....+++.+ ++.++++.+|+|+.+.+
T Consensus 5 ~~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~R~~~~~~~~~l~~~~~~~~~~D~~d~~~l~~~~~~~d~vi~~a~ 81 (299)
T 2wm3_A 5 KKLVVVFGGTGAQGGSVARTLLEDGTFKVRVVTRNPRKKAAKELRLQGAEVVQGDQDDQVIMELALNGAYATFIVTN 81 (299)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHCSSEEEEEESCTTSHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEEEECCC
T ss_pred CCEEEEECCCchHHHHHHHHHHhcCCceEEEEEcCCCCHHHHHHHHCCCEEEEecCCCHHHHHHHHhcCCEEEEeCC
Confidence 578999987 999999999999888 99999887653321 123344321 36678899999988765
|
| >2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=91.94 E-value=0.17 Score=52.53 Aligned_cols=35 Identities=29% Similarity=0.263 Sum_probs=32.1
Q ss_pred cCCeEEEEec-ChhHHHHHHHHHcCCCEEEEECCCC
Q 006864 228 VGKTLAVMGF-GKVGSEVARRAKGLGMNVIAHDPYA 262 (628)
Q Consensus 228 ~GktiGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~ 262 (628)
.|+++.|+|. |.||..+++.++.+|++|++.++..
T Consensus 166 ~g~~vlV~Gasg~iG~~~~~~a~~~G~~Vi~~~~~~ 201 (343)
T 2eih_A 166 PGDDVLVMAAGSGVSVAAIQIAKLFGARVIATAGSE 201 (343)
T ss_dssp TTCEEEECSTTSTTHHHHHHHHHHTTCEEEEEESSH
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence 4789999999 9999999999999999999998763
|
| >2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11 | Back alignment and structure |
|---|
Probab=91.89 E-value=0.15 Score=46.31 Aligned_cols=59 Identities=15% Similarity=0.269 Sum_probs=41.6
Q ss_pred cEEEEeccCCCCchhhHHhhhhcCCccccceEEeeeecCccEEEEEEeCCCCCHHHHHHHhcc
Q 006864 559 NLILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDEEPNQDSLKEIGKV 621 (628)
Q Consensus 559 ~~Llv~~~D~PGvIa~V~~iL~~~~INIa~m~v~R~~~gg~Al~~i~vD~~~~~~~l~~L~~l 621 (628)
+.+.+.-+|+||++++|.+.|+++||||..+.+....+ .++..+..++ ++.+.+.|++.
T Consensus 7 ~~i~v~v~d~~G~l~~i~~~la~~~inI~~i~~~~~~~--~~~~~~~~~d--~~~a~~~L~~~ 65 (144)
T 2f06_A 7 KQLSIFLENKSGRLTEVTEVLAKENINLSALCIAENAD--FGILRGIVSD--PDKAYKALKDN 65 (144)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHTTCCEEEEEEEECSS--CEEEEEEESC--HHHHHHHHHHT
T ss_pred EEEEEEecCCCcHHHHHHHHHHHCCCCEEEEEEEecCC--CCEEEEEeCC--HHHHHHHHHHc
Confidence 45666778999999999999999999999998864322 2444444432 35556656543
|
| >3c8m_A Homoserine dehydrogenase; structural genomics, APC89447, PS protein structure initiative, midwest center for structural genomics; HET: MSE; 1.90A {Thermoplasma volcanium GSS1} PDB: 3jsa_A* | Back alignment and structure |
|---|
Probab=91.82 E-value=0.16 Score=52.98 Aligned_cols=106 Identities=19% Similarity=0.231 Sum_probs=63.0
Q ss_pred CeEEEEecChhHHHHHHHHHcC--------CCEEEE-ECCCCChhH--------HH---HcCCc-c-c---CHHHHh-cc
Q 006864 230 KTLAVMGFGKVGSEVARRAKGL--------GMNVIA-HDPYAPADK--------AR---AVGVE-L-V---SFDQAL-AT 283 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~--------G~~V~~-~d~~~~~~~--------a~---~~g~~-~-~---sl~ell-~~ 283 (628)
.++||||+|.||+.+++.++.. +++|.+ +|+...... .. ..++. . . ++++++ .+
T Consensus 7 irvgIiG~G~VG~~~~~~l~~~~~~~~~g~~~~vvaV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ll~~~ 86 (331)
T 3c8m_A 7 INLSIFGLGNVGLNLLRIIRSFNEENRLGLKFNVVFVADSLHSYYNERIDIGKVISYKEKGSLDSLEYESISASEALARD 86 (331)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHHHCSSSEEEEEEEEECSSCEEECTTCCHHHHHHHHHTTCGGGCCSEECCHHHHHHSS
T ss_pred EeEEEEecCHHHHHHHHHHHhChHHHhcCCcEEEEEEEECChHHhhcccChHHHhhhhccCCcccccCCCCCHHHHhCCC
Confidence 3799999999999999998653 367654 576531110 11 11221 1 2 788888 36
Q ss_pred CCEEEEcCCCCccccccccHHHHhcCCCCcEEEEcCCCchh-cHHHHHHHHhCC
Q 006864 284 ADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVI-DEEALVRALDSG 336 (628)
Q Consensus 284 aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~~v-de~aL~~aL~~g 336 (628)
.|+|+.++|-. .+.+.--+-..+.|+.|.-+|.+.-..+. ..+.|.++.++.
T Consensus 87 iDvVv~~t~~~-~~~~~~~~~~~~AL~aGkhVvtanK~pla~~~~eL~~~A~~~ 139 (331)
T 3c8m_A 87 FDIVVDATPAS-ADGKKELAFYKETFENGKDVVTANKSGLANFWPEIMEYARSN 139 (331)
T ss_dssp CSEEEECSCCC-SSSHHHHHHHHHHHHTTCEEEECCCHHHHHHHHHHHHHHHHH
T ss_pred CCEEEECCCCC-CccchHHHHHHHHHHCCCeEEecCchhhHHHHHHHHHHHHHc
Confidence 89999999964 22222122344456777777765333332 335666655543
|
| >2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=91.80 E-value=0.1 Score=55.46 Aligned_cols=46 Identities=30% Similarity=0.349 Sum_probs=37.6
Q ss_pred cCCeEEEEecChhHHHHHHHHHcCCC-EEEEECCCC-ChhHHHHcCCc
Q 006864 228 VGKTLAVMGFGKVGSEVARRAKGLGM-NVIAHDPYA-PADKARAVGVE 273 (628)
Q Consensus 228 ~GktiGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~-~~~~a~~~g~~ 273 (628)
.|.++.|+|.|.||...++.++.+|. +|++.|+.. ..+.++++|+.
T Consensus 185 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~ 232 (398)
T 2dph_A 185 PGSHVYIAGAGPVGRCAAAGARLLGAACVIVGDQNPERLKLLSDAGFE 232 (398)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHTTTCE
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCc
Confidence 47899999999999999999999999 999998764 23445566653
|
| >3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A* | Back alignment and structure |
|---|
Probab=91.77 E-value=0.21 Score=51.20 Aligned_cols=67 Identities=18% Similarity=0.254 Sum_probs=47.1
Q ss_pred eecCCeEEEEe-cChhHHHHHHHHHcCCCEEEEECCCCCh--hHHH---H-------cCCccc--------CHHHHhccC
Q 006864 226 SLVGKTLAVMG-FGKVGSEVARRAKGLGMNVIAHDPYAPA--DKAR---A-------VGVELV--------SFDQALATA 284 (628)
Q Consensus 226 ~l~GktiGIIG-lG~IG~~vA~~l~~~G~~V~~~d~~~~~--~~a~---~-------~g~~~~--------sl~ell~~a 284 (628)
.+.+|+|.|.| .|.||+.+++.|...|.+|++.++.... .... . .+++.+ +++++++.+
T Consensus 22 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~ 101 (351)
T 3ruf_A 22 IFSPKTWLITGVAGFIGSNLLEKLLKLNQVVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEGDIRDLTTCEQVMKGV 101 (351)
T ss_dssp HHSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHTSCHHHHTTEEEEECCTTCHHHHHHHTTTC
T ss_pred CCCCCeEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhhhhhhccccccCCceEEEEccCCCHHHHHHHhcCC
Confidence 35689999999 5999999999999999999999876421 1111 1 222211 256677788
Q ss_pred CEEEEcCC
Q 006864 285 DFISLHMP 292 (628)
Q Consensus 285 DvV~l~~P 292 (628)
|+|+-+..
T Consensus 102 d~Vih~A~ 109 (351)
T 3ruf_A 102 DHVLHQAA 109 (351)
T ss_dssp SEEEECCC
T ss_pred CEEEECCc
Confidence 88876654
|
| >2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A* | Back alignment and structure |
|---|
Probab=91.76 E-value=0.11 Score=51.51 Aligned_cols=62 Identities=18% Similarity=0.241 Sum_probs=43.6
Q ss_pred eEEEEec-ChhHHHHHHHHHcC--CCEEEEECCCCCh-hHHHHcCCcc--------cCHHHHhccCCEEEEcCC
Q 006864 231 TLAVMGF-GKVGSEVARRAKGL--GMNVIAHDPYAPA-DKARAVGVEL--------VSFDQALATADFISLHMP 292 (628)
Q Consensus 231 tiGIIGl-G~IG~~vA~~l~~~--G~~V~~~d~~~~~-~~a~~~g~~~--------~sl~ell~~aDvV~l~~P 292 (628)
+|.|.|. |.||+.+++.|... |++|++.++.... ......++.. .+++++++.+|+|+.+..
T Consensus 1 ~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vi~~a~ 74 (286)
T 2zcu_A 1 MIAITGATGQLGHYVIESLMKTVPASQIVAIVRNPAKAQALAAQGITVRQADYGDEAALTSALQGVEKLLLISS 74 (286)
T ss_dssp CEEEESTTSHHHHHHHHHHTTTSCGGGEEEEESCTTTCHHHHHTTCEEEECCTTCHHHHHHHTTTCSEEEECC-
T ss_pred CEEEEcCCchHHHHHHHHHHhhCCCceEEEEEcChHhhhhhhcCCCeEEEcCCCCHHHHHHHHhCCCEEEEeCC
Confidence 4678886 99999999999988 9999998876432 1112234322 136678889999977654
|
| >3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural genomics, midwest cente structural genomics; 2.15A {Thiobacillus denitrificans} | Back alignment and structure |
|---|
Probab=91.67 E-value=0.17 Score=55.10 Aligned_cols=62 Identities=16% Similarity=0.197 Sum_probs=0.0
Q ss_pred eEEEEecChhHHHHHHHHHc----------CCCEEEE-ECCCCChhHHHHcCCccc-CHHHHhc--cCCEEEEcCC
Q 006864 231 TLAVMGFGKVGSEVARRAKG----------LGMNVIA-HDPYAPADKARAVGVELV-SFDQALA--TADFISLHMP 292 (628)
Q Consensus 231 tiGIIGlG~IG~~vA~~l~~----------~G~~V~~-~d~~~~~~~a~~~g~~~~-sl~ell~--~aDvV~l~~P 292 (628)
+|||||+|.||+.+++.++. .+.+|.+ +|+..........+.... ++++++. +.|+|+.++|
T Consensus 12 rIgIIG~G~VG~~~~~~L~~~~~~l~~~~g~~i~lvaV~d~~~~~~~~~~~~~~~~~d~~ell~d~diDvVve~tp 87 (444)
T 3mtj_A 12 HVGLLGLGTVGGGTLTVLRRNAEEITRRAGREIRVVRAAVRNLDKAEALAGGLPLTTNPFDVVDDPEIDIVVELIG 87 (444)
T ss_dssp EEEEECCHHHHHHHHHHHHHTHHHHHHHHSSCEEEEEEECSCHHHHHHHHTTCCEESCTHHHHTCTTCCEEEECCC
T ss_pred cEEEECCCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEECCHHHhhhhcccCcccCCHHHHhcCCCCCEEEEcCC
|
| >3nkl_A UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; HET: MSE GOL; 1.90A {Vibrio fischeri} | Back alignment and structure |
|---|
Probab=91.58 E-value=0.14 Score=45.90 Aligned_cols=66 Identities=18% Similarity=0.277 Sum_probs=44.4
Q ss_pred CCeEEEEecChhHHHHHHHHHcC-CCEEEEE-CCCCChhHHHHcCCccc---CHHHHhc--cCCEEEEcCCCC
Q 006864 229 GKTLAVMGFGKVGSEVARRAKGL-GMNVIAH-DPYAPADKARAVGVELV---SFDQALA--TADFISLHMPLN 294 (628)
Q Consensus 229 GktiGIIGlG~IG~~vA~~l~~~-G~~V~~~-d~~~~~~~a~~~g~~~~---sl~ell~--~aDvV~l~~Plt 294 (628)
.+++.|+|.|..|+.+++.++.. |+++++| |.........-.|+... ++.++++ ..|.|++++|..
T Consensus 4 ~~~vlIiGaG~~g~~l~~~l~~~~g~~vvg~~d~~~~~~g~~i~g~pV~g~~~l~~~~~~~~id~viia~~~~ 76 (141)
T 3nkl_A 4 KKKVLIYGAGSAGLQLANMLRQGKEFHPIAFIDDDRKKHKTTMQGITIYRPKYLERLIKKHCISTVLLAVPSA 76 (141)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHSSSEEEEEEECSCGGGTTCEETTEEEECGGGHHHHHHHHTCCEEEECCTTS
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCcEEEEEEECCcccCCCEecCeEEECHHHHHHHHHHCCCCEEEEeCCCC
Confidence 56899999999999999999754 8998876 64421110011233322 4556554 578999999854
|
| >2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A* | Back alignment and structure |
|---|
Probab=91.57 E-value=0.21 Score=50.61 Aligned_cols=63 Identities=13% Similarity=0.277 Sum_probs=46.2
Q ss_pred CeEEEEe-cChhHHHHHHHHHcCCCEEEEECCCCC-hhH----HHHcCCccc--------CHHHHhccCCEEEEcCC
Q 006864 230 KTLAVMG-FGKVGSEVARRAKGLGMNVIAHDPYAP-ADK----ARAVGVELV--------SFDQALATADFISLHMP 292 (628)
Q Consensus 230 ktiGIIG-lG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~----a~~~g~~~~--------sl~ell~~aDvV~l~~P 292 (628)
++|.|.| .|.||+.+++.|...|++|.+.++... ... ....+++.+ ++.++++.+|+|+.+++
T Consensus 12 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~l~~~~v~~v~~Dl~d~~~l~~a~~~~d~vi~~a~ 88 (318)
T 2r6j_A 12 SKILIFGGTGYIGNHMVKGSLKLGHPTYVFTRPNSSKTTLLDEFQSLGAIIVKGELDEHEKLVELMKKVDVVISALA 88 (318)
T ss_dssp CCEEEETTTSTTHHHHHHHHHHTTCCEEEEECTTCSCHHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEEEECCC
T ss_pred CeEEEECCCchHHHHHHHHHHHCCCcEEEEECCCCchhhHHHHhhcCCCEEEEecCCCHHHHHHHHcCCCEEEECCc
Confidence 6899999 599999999999999999999887653 111 123354322 36677888999887765
|
| >4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=91.57 E-value=0.12 Score=56.62 Aligned_cols=64 Identities=17% Similarity=0.279 Sum_probs=47.8
Q ss_pred CCeEEEEecChhHHHHHHHHHcCCCEEEEECCCCCh-hH-HHHcCCccc-----C---HHHH-hccCCEEEEcCC
Q 006864 229 GKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPA-DK-ARAVGVELV-----S---FDQA-LATADFISLHMP 292 (628)
Q Consensus 229 GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~-a~~~g~~~~-----s---l~el-l~~aDvV~l~~P 292 (628)
.++|-|+|+|++|+.+|+.|...|++|.+.|..... +. ...+++..+ + |+++ +++||+++.+++
T Consensus 3 ~M~iiI~G~G~vG~~la~~L~~~~~~v~vId~d~~~~~~~~~~~~~~~i~Gd~~~~~~L~~Agi~~ad~~ia~t~ 77 (461)
T 4g65_A 3 AMKIIILGAGQVGGTLAENLVGENNDITIVDKDGDRLRELQDKYDLRVVNGHASHPDVLHEAGAQDADMLVAVTN 77 (461)
T ss_dssp CEEEEEECCSHHHHHHHHHTCSTTEEEEEEESCHHHHHHHHHHSSCEEEESCTTCHHHHHHHTTTTCSEEEECCS
T ss_pred cCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHhcCcEEEEEcCCCHHHHHhcCCCcCCEEEEEcC
Confidence 468999999999999999999999999999987422 22 234455322 2 4443 688999987776
|
| >1gad_O D-glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase (aldehyde(D)-NAD+(A)); HET: NAD; 1.80A {Escherichia coli} SCOP: c.2.1.3 d.81.1.1 PDB: 1dc4_A* 1dc3_A 1dc6_A* 1dc5_A* 1s7c_A* 1gae_O* 2vyn_A* 2vyv_A* | Back alignment and structure |
|---|
Probab=91.52 E-value=0.21 Score=52.28 Aligned_cols=31 Identities=26% Similarity=0.541 Sum_probs=25.4
Q ss_pred eEEEEecChhHHHHHHHHHcC-CCEEEEECCC
Q 006864 231 TLAVMGFGKVGSEVARRAKGL-GMNVIAHDPY 261 (628)
Q Consensus 231 tiGIIGlG~IG~~vA~~l~~~-G~~V~~~d~~ 261 (628)
++||+|+|+||+.+.+.|... .++|.+....
T Consensus 3 kVgI~G~G~iG~~l~R~l~~~~~veiv~i~~~ 34 (330)
T 1gad_O 3 KVGINGFGRIGRIVFRAAQKRSDIEIVAINDL 34 (330)
T ss_dssp EEEEECCSHHHHHHHHHHHTCSSEEEEEEECS
T ss_pred EEEEECcCHHHHHHHHHHHcCCCeEEEEEcCC
Confidence 799999999999999998754 5788776433
|
| >4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A | Back alignment and structure |
|---|
Probab=91.48 E-value=0.27 Score=52.91 Aligned_cols=87 Identities=21% Similarity=0.215 Sum_probs=60.8
Q ss_pred cCCeEEEEec-ChhHHHHHHHHHcCCCEEEEECCCC-ChhHHHHcCCccc-CH------------------------H--
Q 006864 228 VGKTLAVMGF-GKVGSEVARRAKGLGMNVIAHDPYA-PADKARAVGVELV-SF------------------------D-- 278 (628)
Q Consensus 228 ~GktiGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~g~~~~-sl------------------------~-- 278 (628)
.|+++.|+|. |.||...++.++.+|.+|++.++.. ..+.++++|+..+ +. +
T Consensus 220 ~g~~VlV~GasG~iG~~a~qla~~~Ga~vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 299 (447)
T 4a0s_A 220 QGDIVLIWGASGGLGSYAIQFVKNGGGIPVAVVSSAQKEAAVRALGCDLVINRAELGITDDIADDPRRVVETGRKLAKLV 299 (447)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCCCEEEHHHHTCCTTGGGCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCCEEEecccccccccccccccccchhhhHHHHHH
Confidence 5899999998 9999999999999999999987653 2344566776422 11 1
Q ss_pred -HHh-ccCCEEEEcCCCCccccccccHHHHhcCCCCcEEEEcCC
Q 006864 279 -QAL-ATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVAR 320 (628)
Q Consensus 279 -ell-~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aR 320 (628)
++. ...|+|+-++.. + .-...+..|+++..+++++.
T Consensus 300 ~~~~g~g~Dvvid~~G~--~----~~~~~~~~l~~~G~iv~~G~ 337 (447)
T 4a0s_A 300 VEKAGREPDIVFEHTGR--V----TFGLSVIVARRGGTVVTCGS 337 (447)
T ss_dssp HHHHSSCCSEEEECSCH--H----HHHHHHHHSCTTCEEEESCC
T ss_pred HHHhCCCceEEEECCCc--h----HHHHHHHHHhcCCEEEEEec
Confidence 111 247888877652 1 12456677888888888863
|
| >2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A* | Back alignment and structure |
|---|
Probab=91.44 E-value=0.17 Score=52.86 Aligned_cols=35 Identities=11% Similarity=0.174 Sum_probs=31.9
Q ss_pred cCCeEEEEe-cChhHHHHHHHHHcCCCEEEEECCCC
Q 006864 228 VGKTLAVMG-FGKVGSEVARRAKGLGMNVIAHDPYA 262 (628)
Q Consensus 228 ~GktiGIIG-lG~IG~~vA~~l~~~G~~V~~~d~~~ 262 (628)
.|+++.|+| .|.||..+++.++..|++|++.++..
T Consensus 162 ~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~Vi~~~~~~ 197 (354)
T 2j8z_A 162 AGDYVLIHAGLSGVGTAAIQLTRMAGAIPLVTAGSQ 197 (354)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CCCEEEEECCccHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 478999999 79999999999999999999998763
|
| >1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=91.44 E-value=0.49 Score=47.56 Aligned_cols=66 Identities=18% Similarity=0.283 Sum_probs=48.4
Q ss_pred CCeEEEEe-cChhHHHHHHHHHcCCCEEEEECCCCC---hhHH------HHcCCccc--------CHHHHhccCCEEEEc
Q 006864 229 GKTLAVMG-FGKVGSEVARRAKGLGMNVIAHDPYAP---ADKA------RAVGVELV--------SFDQALATADFISLH 290 (628)
Q Consensus 229 GktiGIIG-lG~IG~~vA~~l~~~G~~V~~~d~~~~---~~~a------~~~g~~~~--------sl~ell~~aDvV~l~ 290 (628)
.++|.|.| .|.||+.+++.|...|++|.+.++... .+.. ...+++.+ ++.++++.+|+|+.+
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~l~~~~~~~d~vi~~ 83 (313)
T 1qyd_A 4 KSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLIEASLDDHQRLVDALKQVDVVISA 83 (313)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCCSSCHHHHHHHHHHHTTTCEEECCCSSCHHHHHHHHTTCSEEEEC
T ss_pred CCEEEEEcCCcHHHHHHHHHHHhCCCcEEEEECCCcccchhHHHHHHHHHhCCeEEEeCCCCCHHHHHHHHhCCCEEEEC
Confidence 47899998 599999999999999999999988642 2221 12344322 366788899999887
Q ss_pred CCCC
Q 006864 291 MPLN 294 (628)
Q Consensus 291 ~Plt 294 (628)
+...
T Consensus 84 a~~~ 87 (313)
T 1qyd_A 84 LAGG 87 (313)
T ss_dssp CCCS
T ss_pred Cccc
Confidence 7643
|
| >4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=91.28 E-value=0.32 Score=50.96 Aligned_cols=45 Identities=22% Similarity=0.381 Sum_probs=36.5
Q ss_pred cCCeEEEEe-cChhHHHHHHHHHc-CCCEEEEECCCC-ChhHHHHcCC
Q 006864 228 VGKTLAVMG-FGKVGSEVARRAKG-LGMNVIAHDPYA-PADKARAVGV 272 (628)
Q Consensus 228 ~GktiGIIG-lG~IG~~vA~~l~~-~G~~V~~~d~~~-~~~~a~~~g~ 272 (628)
.|.++.|+| .|.||...++.++. .|.+|++.++.. ..+.++++|+
T Consensus 171 ~g~~VlV~Ga~G~vG~~a~qlak~~~g~~Vi~~~~~~~~~~~~~~lGa 218 (363)
T 4dvj_A 171 AAPAILIVGGAGGVGSIAVQIARQRTDLTVIATASRPETQEWVKSLGA 218 (363)
T ss_dssp SEEEEEEESTTSHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHTTC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHcCC
Confidence 578999999 99999999999998 589999999864 3344555664
|
| >1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP} | Back alignment and structure |
|---|
Probab=91.27 E-value=0.17 Score=52.24 Aligned_cols=35 Identities=23% Similarity=0.300 Sum_probs=31.7
Q ss_pred cCCeEEEEec-ChhHHHHHHHHHcCCCEEEEECCCC
Q 006864 228 VGKTLAVMGF-GKVGSEVARRAKGLGMNVIAHDPYA 262 (628)
Q Consensus 228 ~GktiGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~ 262 (628)
.|+++.|+|. |.||..+++.++..|++|++.++..
T Consensus 145 ~g~~vlV~Ga~ggiG~~~~~~a~~~G~~Vi~~~~~~ 180 (333)
T 1wly_A 145 PGDYVLIHAAAGGMGHIMVPWARHLGATVIGTVSTE 180 (333)
T ss_dssp TTCEEEETTTTSTTHHHHHHHHHHTTCEEEEEESSH
T ss_pred CCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 4789999995 9999999999999999999998763
|
| >3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum} | Back alignment and structure |
|---|
Probab=91.27 E-value=0.18 Score=49.86 Aligned_cols=37 Identities=30% Similarity=0.351 Sum_probs=31.2
Q ss_pred ecCCeEEEEec-ChhHHHHHHHHHcCCCEEEEECCCCC
Q 006864 227 LVGKTLAVMGF-GKVGSEVARRAKGLGMNVIAHDPYAP 263 (628)
Q Consensus 227 l~GktiGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~~ 263 (628)
-.||++.|.|. |.||+++|++|...|++|++.++...
T Consensus 20 ~m~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~ 57 (251)
T 3orf_A 20 HMSKNILVLGGSGALGAEVVKFFKSKSWNTISIDFREN 57 (251)
T ss_dssp --CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCC
T ss_pred ccCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCcc
Confidence 34789999985 68999999999999999999987753
|
| >3cmc_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase; microspectrophotometry, reaction intermediate, dehydrogenase phosphate binding site; HET: G3H NAD; 1.77A {Bacillus stearothermophilus} SCOP: c.2.1.3 d.81.1.1 PDB: 2gd1_O 1gd1_O* 1npt_O* 1nqa_O* 1nqo_O* 1nq5_O* 2dbv_O* 1dbv_O* 3dbv_O* 4dbv_O* | Back alignment and structure |
|---|
Probab=91.25 E-value=0.18 Score=52.89 Aligned_cols=29 Identities=31% Similarity=0.582 Sum_probs=24.7
Q ss_pred eEEEEecChhHHHHHHHHHcC-CCEEEEEC
Q 006864 231 TLAVMGFGKVGSEVARRAKGL-GMNVIAHD 259 (628)
Q Consensus 231 tiGIIGlG~IG~~vA~~l~~~-G~~V~~~d 259 (628)
+|||+|+|+||+.+.+.|... .++|.+.+
T Consensus 3 kVgI~G~G~iGr~l~R~l~~~~~veivain 32 (334)
T 3cmc_O 3 KVGINGFGRIGRNVFRAALKNPDIEVVAVN 32 (334)
T ss_dssp EEEEESCSHHHHHHHHHHTTCTTEEEEEEE
T ss_pred EEEEECCCHHHHHHHHHHhCCCCeEEEEEe
Confidence 799999999999999998765 57887654
|
| >3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A* | Back alignment and structure |
|---|
Probab=91.25 E-value=0.17 Score=52.17 Aligned_cols=38 Identities=24% Similarity=0.315 Sum_probs=33.2
Q ss_pred eeecCCeEEEEecChhHHHHHHHHHcCCC-EEEEECCCC
Q 006864 225 VSLVGKTLAVMGFGKVGSEVARRAKGLGM-NVIAHDPYA 262 (628)
Q Consensus 225 ~~l~GktiGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~ 262 (628)
..|++++|.|||+|.+|..+|+.|...|. ++..+|...
T Consensus 32 ~kL~~~~VlVvGaGGlGs~va~~La~aGVG~i~lvD~D~ 70 (292)
T 3h8v_A 32 EKIRTFAVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYDK 70 (292)
T ss_dssp CGGGGCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred HHHhCCeEEEECcCHHHHHHHHHHHHcCCCEEEEECCCc
Confidence 35899999999999999999999998885 788888653
|
| >2r00_A Aspartate-semialdehyde dehydrogenase; conformational change, half-OF-sites-reactivity, protein evolution, sequence homology; HET: HTI; 2.03A {Vibrio cholerae} PDB: 2qz9_A* 2r00_C* | Back alignment and structure |
|---|
Probab=91.20 E-value=0.078 Score=55.58 Aligned_cols=86 Identities=10% Similarity=0.081 Sum_probs=49.9
Q ss_pred CeEEEEe-cChhHHHHHHHHHcC---CCEEEEEC-CCCC-hhH-HHHcCCcccCHH-HHhccCCEEEEcCCCCccccccc
Q 006864 230 KTLAVMG-FGKVGSEVARRAKGL---GMNVIAHD-PYAP-ADK-ARAVGVELVSFD-QALATADFISLHMPLNPTTSKIF 301 (628)
Q Consensus 230 ktiGIIG-lG~IG~~vA~~l~~~---G~~V~~~d-~~~~-~~~-a~~~g~~~~sl~-ell~~aDvV~l~~Plt~~t~~li 301 (628)
.++||+| +|.||+.+.+.|... .+++.++. +... ... .....+...+++ +.+..+|+|+.|+|... ++..
T Consensus 4 ~kV~I~GAtG~iG~~llr~L~~~~~p~~elv~i~s~~~~G~~~~~~~~~i~~~~~~~~~~~~vDvVf~a~g~~~-s~~~- 81 (336)
T 2r00_A 4 FNVAIFGATGAVGETMLEVLQEREFPVDELFLLASERSEGKTYRFNGKTVRVQNVEEFDWSQVHIALFSAGGEL-SAKW- 81 (336)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTTCCEEEEEEEECTTTTTCEEEETTEEEEEEEGGGCCGGGCSEEEECSCHHH-HHHH-
T ss_pred cEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEEECCCCCCCceeecCceeEEecCChHHhcCCCEEEECCCchH-HHHH-
Confidence 5799999 999999999998765 36766654 3211 100 000011111221 24468999999998432 1111
Q ss_pred cHHHHhcCCCCcEEEEcCC
Q 006864 302 NDETFAKMKKGVRIVNVAR 320 (628)
Q Consensus 302 ~~~~l~~mk~gailIN~aR 320 (628)
.-..++.|+.+|+.+.
T Consensus 82 ---a~~~~~~G~~vId~s~ 97 (336)
T 2r00_A 82 ---APIAAEAGVVVIDNTS 97 (336)
T ss_dssp ---HHHHHHTTCEEEECSS
T ss_pred ---HHHHHHcCCEEEEcCC
Confidence 1112466888888763
|
| >1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A* | Back alignment and structure |
|---|
Probab=91.08 E-value=0.25 Score=52.81 Aligned_cols=66 Identities=15% Similarity=0.067 Sum_probs=51.5
Q ss_pred eecCCeEEEEecCh----------hHHHHHHHHHcCCCEEEEECCCCChhHHHHcCCccc-CHHHHhccCCEEEEcCC
Q 006864 226 SLVGKTLAVMGFGK----------VGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELV-SFDQALATADFISLHMP 292 (628)
Q Consensus 226 ~l~GktiGIIGlG~----------IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~-sl~ell~~aDvV~l~~P 292 (628)
.+.|++|+|+|+-- =...+++.|+..|.+|.+|||..+..+ ...+..++ +++++++.||+|+++..
T Consensus 306 ~~~~~~v~vlGlafK~~~~d~R~sp~~~i~~~L~~~g~~v~~~DP~~~~~~-~~~~~~~~~~~~~~~~~~d~~v~~~~ 382 (402)
T 1dlj_A 306 ESPVKVVGVYRLIMKSNSDNFRESAIKDVIDILKSKDIKIIIYEPMLNKLE-SEDQSVLVNDLENFKKQANIIVTNRY 382 (402)
T ss_dssp CCSSCEEEEECCCSSTTCSCCTTCHHHHHHHHHHTSSCEEEEECTTCSCCC-TTCCSEECCCHHHHHHHCSEEECSSC
T ss_pred CCCCCEEEEEeeeccCCCcccccChHHHHHHHHHHCCCEEEEECCCCChHH-HHcCCeecCCHHHHHhCCcEEEEecC
Confidence 58899999999842 467899999999999999999864321 11344433 68999999999999665
|
| >3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A* | Back alignment and structure |
|---|
Probab=91.07 E-value=0.63 Score=47.06 Aligned_cols=38 Identities=21% Similarity=0.190 Sum_probs=33.7
Q ss_pred eeecCCeEEEEec-ChhHHHHHHHHHcCCCEEEEECCCC
Q 006864 225 VSLVGKTLAVMGF-GKVGSEVARRAKGLGMNVIAHDPYA 262 (628)
Q Consensus 225 ~~l~GktiGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~ 262 (628)
.++.||++.|.|- |.||+++|++|...|++|++.++..
T Consensus 43 ~~l~gk~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~ 81 (291)
T 3ijr_A 43 EKLKGKNVLITGGDSGIGRAVSIAFAKEGANIAIAYLDE 81 (291)
T ss_dssp STTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 4688999999975 7899999999999999999988764
|
| >1ebf_A Homoserine dehydrogenase; dinucleotide, NAD, dimer, oxidoreductase; HET: NAD; 2.30A {Saccharomyces cerevisiae} SCOP: c.2.1.3 d.81.1.2 PDB: 1ebu_A* 1tve_A* 1q7g_A* | Back alignment and structure |
|---|
Probab=91.06 E-value=0.15 Score=54.00 Aligned_cols=30 Identities=27% Similarity=0.451 Sum_probs=24.2
Q ss_pred eEEEEecChhHHHHHHHHHcC----CCEEEE-ECC
Q 006864 231 TLAVMGFGKVGSEVARRAKGL----GMNVIA-HDP 260 (628)
Q Consensus 231 tiGIIGlG~IG~~vA~~l~~~----G~~V~~-~d~ 260 (628)
++||||+|.||+.+++.++.. +++|.+ +|+
T Consensus 6 ~vgIiG~G~VG~~~~~~l~~~~~g~~~~vvaV~d~ 40 (358)
T 1ebf_A 6 NVAVIGAGVVGSAFLDQLLAMKSTITYNLVLLAEA 40 (358)
T ss_dssp EEEEECCSHHHHHHHHHHHHCCCSSEEEEEEEECS
T ss_pred EEEEEecCHHHHHHHHHHHhcCCCCCEEEEEEEEC
Confidence 799999999999999999864 356654 464
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 628 | ||||
| d1ygya1 | 184 | c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase | 1e-43 | |
| d1gdha1 | 191 | c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyp | 6e-42 | |
| d2naca1 | 188 | c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudom | 6e-40 | |
| d1sc6a1 | 188 | c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase | 1e-37 | |
| d1mx3a1 | 193 | c.2.1.4 (A:126-318) Transcription corepressor CtbP | 7e-34 | |
| d1j4aa1 | 197 | c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lacto | 3e-28 | |
| d1ygya2 | 130 | c.23.12.1 (A:3-98,A:283-316) Phosphoglycerate dehy | 1e-24 | |
| d1qp8a1 | 181 | c.2.1.4 (A:83-263) Putative formate dehydrogenase | 1e-24 | |
| d1gdha2 | 129 | c.23.12.1 (A:2-100,A:292-321) D-glycerate dehydrog | 5e-23 | |
| d1dxya1 | 199 | c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydro | 3e-21 | |
| d1mx3a2 | 133 | c.23.12.1 (A:27-125,A:319-352) Transcription corep | 4e-21 | |
| d1sc6a2 | 132 | c.23.12.1 (A:7-107,A:296-326) Phosphoglycerate deh | 5e-20 | |
| d1dxya2 | 131 | c.23.12.1 (A:1-100,A:300-330) D-2-hydroxyisocaproa | 3e-18 | |
| d1j4aa2 | 134 | c.23.12.1 (A:2-103,A:301-332) D-lactate dehydrogen | 6e-18 | |
| d1ygya4 | 135 | d.81.2.2 (A:317-451) D-3-phosphoglycerate dehydrog | 3e-17 | |
| d2naca2 | 186 | c.23.12.1 (A:1-147,A:336-374) Formate dehydrogenas | 4e-16 | |
| d1li4a1 | 163 | c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolas | 1e-13 | |
| d1qp8a2 | 121 | c.23.12.1 (A:1-82,A:264-302) Putative formate dehy | 2e-12 | |
| d1ygya3 | 78 | d.58.18.1 (A:452-529) Phosphoglycerate dehydrogena | 2e-12 | |
| d1sc6a3 | 84 | d.58.18.1 (A:327-410) Phosphoglycerate dehydrogena | 9e-11 | |
| d1v8ba1 | 163 | c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolas | 2e-08 | |
| d1pjqa1 | 113 | c.2.1.11 (A:1-113) Siroheme synthase CysG, domain | 3e-05 | |
| d1hwxa1 | 293 | c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow ( | 7e-05 | |
| d1v9la1 | 242 | c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrob | 1e-04 | |
| d1leha1 | 230 | c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillu | 3e-04 | |
| d1c1da1 | 201 | c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {R | 0.002 | |
| d1bgva1 | 255 | c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clost | 0.004 |
| >d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 184 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 152 bits (385), Expect = 1e-43
Identities = 87/185 (47%), Positives = 116/185 (62%), Gaps = 1/185 (0%)
Query: 186 NTVAAAEHGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVA 245
N +AAEH +ALL + +R + ADAS++ W RS + G + GKT+ V+G G++G VA
Sbjct: 1 NIHSAAEHALALLLAASRQIPAADASLREHTWKRSSFSGTEIFGKTVGVVGLGRIGQLVA 60
Query: 246 RRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDET 305
+R G V+A+DPY +A +G+EL+S D LA ADFIS+H+P P T+ + + E
Sbjct: 61 QRIAAFGAYVVAYDPYVSPARAAQLGIELLSLDDLLARADFISVHLPKTPETAGLIDKEA 120
Query: 306 FAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTV 365
AK K GV IVN ARGG++DE AL A+ G V A LDVF EP DS L + V V
Sbjct: 121 LAKTKPGVIIVNAARGGLVDEAALADAITGGHVRAAGLDVFATEPC-TDSPLFELAQVVV 179
Query: 366 TPHLG 370
TPHLG
Sbjct: 180 TPHLG 184
|
| >d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]} Length = 191 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-glycerate dehydrogenase species: Hyphomicrobium methylovorum [TaxId: 84]
Score = 148 bits (373), Expect = 6e-42
Identities = 63/191 (32%), Positives = 94/191 (49%), Gaps = 6/191 (3%)
Query: 187 TVAAAEHGIALLASMARNVSQADASIKAGKWL---RSKYVGVSLVGKTLAVMGFGKVGSE 243
TVA AE + LL AR + + I+ W + VG L KTL + GFG +G
Sbjct: 2 TVATAEIAMLLLLGSARRAGEGEKMIRTRSWPGWEPLELVGEKLDNKTLGIYGFGSIGQA 61
Query: 244 VARRAKGLGMNVIAHDPYAPADKARA--VGVELVSFDQALATADFISLHMPLNPTTSKIF 301
+A+RA+G M++ D + + A S D L+ + F SL+ P P T F
Sbjct: 62 LAKRAQGFDMDIDYFDTHRASSSDEASYQATFHDSLDSLLSVSQFFSLNAPSTPETRYFF 121
Query: 302 NDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHE 361
N T + +G +VN ARG ++D E +V AL++G +A A DVF EP +
Sbjct: 122 NKATIKSLPQGAIVVNTARGDLVDNELVVAALEAGRLAYAGFDVFAGEPN-INEGYYDLP 180
Query: 362 NVTVTPHLGAS 372
N + PH+G++
Sbjct: 181 NTFLFPHIGSA 191
|
| >d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]} Length = 188 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Formate dehydrogenase species: Pseudomonas sp., strain 101 [TaxId: 306]
Score = 142 bits (358), Expect = 6e-40
Identities = 51/187 (27%), Positives = 86/187 (45%), Gaps = 4/187 (2%)
Query: 188 VAAAEHGIALLASMARNVSQADASIKAGKWLRSKYV--GVSLVGKTLAVMGFGKVGSEVA 245
++ AEH + ++ S+ RN + + G W + V L + + G++G V
Sbjct: 1 ISVAEHVVMMILSLVRNYLPSHEWARKGGWNIADCVSHAYDLEAMHVGTVAAGRIGLAVL 60
Query: 246 RRAKGLGMNVIAHDPYAPADKARAVG--VELVSFDQALATADFISLHMPLNPTTSKIFND 303
RR +++ D + + + + D ++L+ PL+P T + ND
Sbjct: 61 RRLAPFDVHLHYTDRHRLPESVEKELNLTWHATREDMYPVCDVVTLNCPLHPETEHMIND 120
Query: 304 ETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENV 363
ET K+G IVN ARG + D +A+ RAL+SG +A A DV+ +P KD
Sbjct: 121 ETLKLFKRGAYIVNTARGKLCDRDAVARALESGRLAGYAGDVWFPQPAPKDHPWRTMPYN 180
Query: 364 TVTPHLG 370
+TPH+
Sbjct: 181 GMTPHIS 187
|
| >d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]} Length = 188 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Escherichia coli [TaxId: 562]
Score = 135 bits (341), Expect = 1e-37
Identities = 63/189 (33%), Positives = 95/189 (50%), Gaps = 6/189 (3%)
Query: 186 NTVAAAEHGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVA 245
NT + AE I L + R V +A+A G + GK L ++G+G +G+++
Sbjct: 1 NTRSVAELVIGELLLLLRGVPEANAKAHRGVGNKLAAGSFEARGKKLGIIGYGHIGTQLG 60
Query: 246 RRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDET 305
A+ LGM V +D A V+ L +D +SLH+P NP+T + +
Sbjct: 61 ILAESLGMYVYFYDIENKLPLGNATQVQ--HLSDLLNMSDVVSLHVPENPSTKNMMGAKE 118
Query: 306 FAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEEPPAKD----SKLVQHE 361
+ MK G ++N +RG V+D AL AL S +A AA+DVF EP S L + +
Sbjct: 119 ISLMKPGSLLINASRGTVVDIPALADALASKHLAGAAIDVFPTEPATNSDPFTSPLAEFD 178
Query: 362 NVTVTPHLG 370
NV +TPH+G
Sbjct: 179 NVLLTPHIG 187
|
| >d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]} Length = 193 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Transcription corepressor CtbP species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]
Score = 125 bits (314), Expect = 7e-34
Identities = 61/187 (32%), Positives = 98/187 (52%), Gaps = 9/187 (4%)
Query: 191 AEHGIALLASMARNVSQADASIKAGKWLRSK-------YVGVSLVGKTLAVMGFGKVGSE 243
A+ + + ++ R + +++ G ++S + G+TL ++G G+VG
Sbjct: 4 ADSTLCHILNLYRRATWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLGRVGQA 63
Query: 244 VARRAKGLGMNVIAHDPYAPADKARAVGVE-LVSFDQALATADFISLHMPLNPTTSKIFN 302
VA RAK G NV+ +DPY RA+G++ + + L +D ++LH LN + N
Sbjct: 64 VALRAKAFGFNVLFYDPYLSDGVERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLIN 123
Query: 303 DETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEEP-PAKDSKLVQHE 361
D T +M++G +VN ARGG++DE+AL +AL G + AALDV EP L
Sbjct: 124 DFTVKQMRQGAFLVNTARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFSQGPLKDAP 183
Query: 362 NVTVTPH 368
N+ TPH
Sbjct: 184 NLICTPH 190
|
| >d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]} Length = 197 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-lactate dehydrogenase species: Lactobacillus helveticus [TaxId: 1587]
Score = 110 bits (274), Expect = 3e-28
Identities = 60/193 (31%), Positives = 91/193 (47%), Gaps = 14/193 (7%)
Query: 189 AAAEHGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRA 248
A AEH A + R D + + +G + + + V+G G +G +
Sbjct: 3 AIAEHAAIQAARILRQDKAMDEKVARHDLRWAPTIGREVRDQVVGVVGTGHIGQVFMQIM 62
Query: 249 KGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAK 308
+G G VI +D + + G + S D AD ISLH+P P + NDE+ AK
Sbjct: 63 EGFGAKVITYDIF-RNPELEKKGYYVDSLDDLYKQADVISLHVPDVPANVHMINDESIAK 121
Query: 309 MKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEEPP-------------AKDS 355
MK+ V IVNV+RG ++D +A++R LDSG + A+DV+ E A+ +
Sbjct: 122 MKQDVVIVNVSRGPLVDTDAVIRGLDSGKIFGYAMDVYEGEVGIFNEDWEGKEFPDARLA 181
Query: 356 KLVQHENVTVTPH 368
L+ NV VTP
Sbjct: 182 DLIARPNVLVTPK 194
|
| >d1ygya2 c.23.12.1 (A:3-98,A:283-316) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 130 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Formate/glycerate dehydrogenase catalytic domain-like family: Formate/glycerate dehydrogenases, substrate-binding domain domain: Phosphoglycerate dehydrogenase species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 97.5 bits (242), Expect = 1e-24
Identities = 45/129 (34%), Positives = 68/129 (52%), Gaps = 1/129 (0%)
Query: 90 KPTILVSEKLGEAGLAILRSFGNVECLYDLSPEALCEKISQCDALIVRSGTKVTRSVFEA 149
P +L+++KL + +A L V + + L + + DAL+VRS T V V A
Sbjct: 2 LPVVLIADKLAPSTVAALGDQVEVRWVDGPDRDKLLAAVPEADALLVRSATTVDAEVLAA 61
Query: 150 ANGKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQAD 209
A KLK+V RAGVG+DNVD+ AAT G LVVNAP + + A A+ + + ++ A
Sbjct: 62 AP-KLKIVARAGVGLDNVDVDAATARGVLVVNAPTSASTAEAQDRAGTDVAESVRLALAG 120
Query: 210 ASIKAGKWL 218
+ +
Sbjct: 121 EFVPDAVNV 129
|
| >d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Length = 181 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Putative formate dehydrogenase species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Score = 99.1 bits (245), Expect = 1e-24
Identities = 50/187 (26%), Positives = 80/187 (42%), Gaps = 8/187 (4%)
Query: 185 ANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEV 244
A+ VA E +ALL + + + Q +K G + R + + G+ +AV+G G++G+ V
Sbjct: 1 ADAVA--EFALALLLAPYKRIIQYGEKMKRGDYGRDVEIPLI-QGEKVAVLGLGEIGTRV 57
Query: 245 ARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDE 304
+ LG V R S ++AL A +PLN T + +
Sbjct: 58 GKILAALGAQVRGFSRTPKEGPWRFT----NSLEEALREARAAVCALPLNKHTRGLVKYQ 113
Query: 305 TFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFT-EEPPAKDSKLVQHENV 363
A M + VNV R V+D + ++R L A DV+ AKD++ NV
Sbjct: 114 HLALMAEDAVFVNVGRAEVLDRDGVLRILKERPQFIFASDVWWGRNDFAKDAEFFSLPNV 173
Query: 364 TVTPHLG 370
TP +
Sbjct: 174 VATPWVA 180
|
| >d1gdha2 c.23.12.1 (A:2-100,A:292-321) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]} Length = 129 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Formate/glycerate dehydrogenase catalytic domain-like family: Formate/glycerate dehydrogenases, substrate-binding domain domain: D-glycerate dehydrogenase species: Hyphomicrobium methylovorum [TaxId: 84]
Score = 92.8 bits (230), Expect = 5e-23
Identities = 32/125 (25%), Positives = 51/125 (40%), Gaps = 3/125 (2%)
Query: 90 KPTILVSEKLGEAGLAILRSFGNVECLYD---LSPEALCEKISQCDALIVRSGTKVTRSV 146
K IL++ L EA +A R +V D ++ + + E DAL++ K + V
Sbjct: 1 KKKILITWPLPEAAMARARESYDVIAHGDDPKITIDEMIETAKSVDALLITLNEKCRKEV 60
Query: 147 FEAANGKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVS 206
+ +K + +G D++DL A G V NAP T A + +
Sbjct: 61 IDRIPENIKCISTYSIGFDHIDLDACKARGIKVGNAPHGATQAREDMAHQANDLIDALFG 120
Query: 207 QADAS 211
AD S
Sbjct: 121 GADMS 125
|
| >d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]} Length = 199 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-2-hydroxyisocaproate dehydrogenase species: Lactobacillus casei [TaxId: 1582]
Score = 89.9 bits (221), Expect = 3e-21
Identities = 55/198 (27%), Positives = 90/198 (45%), Gaps = 16/198 (8%)
Query: 187 TVAAAEHGIALLASMARNVSQADASIKAGKWLRS-KYVGVSLVGKTLAVMGFGKVGSEVA 245
A AE + + RN+ + A ++AG + ++ ++G L +T+ VMG G +G
Sbjct: 2 PAAIAEFALTDTLYLLRNMGKVQAQLQAGDYEKAGTFIGKELGQQTVGVMGTGHIGQVAI 61
Query: 246 RRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDET 305
+ KG G VIA+DPY VS + +D I LH+P + I N+
Sbjct: 62 KLFKGFGAKVIAYDPYPMKGDHPDFDY--VSLEDLFKQSDVIDLHVPGIEQNTHIINEAA 119
Query: 306 FAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEEPPAKD----------- 354
F MK G ++N AR +ID +A++ L SG +A +D + E
Sbjct: 120 FNLMKPGAIVINTARPNLIDTQAMLSNLKSGKLAGVGIDTYEYETEDLLNLAKHGSFKDP 179
Query: 355 --SKLVQHENVTVTPHLG 370
+L+ NV ++PH+
Sbjct: 180 LWDELLGMPNVVLSPHIA 197
|
| >d1mx3a2 c.23.12.1 (A:27-125,A:319-352) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]} Length = 133 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Formate/glycerate dehydrogenase catalytic domain-like family: Formate/glycerate dehydrogenases, substrate-binding domain domain: Transcription corepressor CtbP species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]
Score = 87.3 bits (216), Expect = 4e-21
Identities = 27/129 (20%), Positives = 54/129 (41%), Gaps = 4/129 (3%)
Query: 91 PTILVSEKL-GEAGLAILRSFGNVECLYDLSPEALCEKI-SQCDALIVRSGTKVTRSVFE 148
P + + + + IL+ V S + + EK+ ++ ++ +TR E
Sbjct: 2 PLVALLDGRDCTVEMPILKDVATVAFCDAQSTQEIHEKVLNEAVGALMYHTITLTREDLE 61
Query: 149 AANGKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQA 208
L+++ R G G DN+D+++A + G V N P A+ + + I + AR + +A
Sbjct: 62 KFK-ALRIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASV-YSEQASIEMREEAAREIRRA 119
Query: 209 DASIKAGKW 217
Sbjct: 120 ITGRIPDSL 128
|
| >d1sc6a2 c.23.12.1 (A:7-107,A:296-326) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]} Length = 132 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Formate/glycerate dehydrogenase catalytic domain-like family: Formate/glycerate dehydrogenases, substrate-binding domain domain: Phosphoglycerate dehydrogenase species: Escherichia coli [TaxId: 562]
Score = 84.3 bits (208), Expect = 5e-20
Identities = 37/131 (28%), Positives = 56/131 (42%), Gaps = 6/131 (4%)
Query: 90 KPTILVSEKLGEAGLAILRSFGNVECLY---DLSPEALCEKISQCDALIVRSGTKVTRSV 146
K L+ E + + L LR+ G + L E L E I + +RS T +T V
Sbjct: 4 KIKFLLVEGVHQKALESLRAAGYTNIEFHKGALDDEQLKESIRDAHFIGLRSRTHLTEDV 63
Query: 147 FEAANGKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVS 206
A KL +G +G + VDL AA + G V NAP ++T A E+ +A + +
Sbjct: 64 INA-AEKLVAIGAFAIGTNQVDLDAAAKRGIPVFNAPFSSTQEAQENIGLEVA--GKLIK 120
Query: 207 QADASIKAGKW 217
+D
Sbjct: 121 YSDNGSTLSAV 131
|
| >d1dxya2 c.23.12.1 (A:1-100,A:300-330) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]} Length = 131 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Formate/glycerate dehydrogenase catalytic domain-like family: Formate/glycerate dehydrogenases, substrate-binding domain domain: D-2-hydroxyisocaproate dehydrogenase species: Lactobacillus casei [TaxId: 1582]
Score = 79.0 bits (194), Expect = 3e-18
Identities = 21/104 (20%), Positives = 37/104 (35%), Gaps = 1/104 (0%)
Query: 113 VECLYDLSPEALCEKISQCDALIVRSGTKVTRSVFEA-ANGKLKVVGRAGVGIDNVDLQA 171
+E + E E D + T VFE +K + VG DN+D+ A
Sbjct: 27 LEYHTEFLDENTVEWAKGFDGINSLQTTPYAAGVFEKMHAYGIKFLTIRNVGTDNIDMTA 86
Query: 172 ATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAG 215
++G + N P A L + +++ + S +
Sbjct: 87 MKQYGIRLSNVPAYTETAVHNMVYFSLQHLVDFLTKGETSTEVT 130
|
| >d1j4aa2 c.23.12.1 (A:2-103,A:301-332) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]} Length = 134 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Formate/glycerate dehydrogenase catalytic domain-like family: Formate/glycerate dehydrogenases, substrate-binding domain domain: D-lactate dehydrogenase species: Lactobacillus helveticus [TaxId: 1587]
Score = 78.0 bits (192), Expect = 6e-18
Identities = 21/114 (18%), Positives = 39/114 (34%), Gaps = 6/114 (5%)
Query: 107 LRSFGNVECLY--DLSPEALCEKISQCDALIVRSGTKVTRSVFEA-ANGKLKVVGRAGVG 163
+ +VE Y L D ++V +A A+ + + VG
Sbjct: 20 EDAHKDVEVEYTDKLLTPETVALAKGADGVVVYQQLDYIAETLQALADNGITKMSLRNVG 79
Query: 164 IDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKW 217
+DN+D+ A E G + N P + H + + A + + K +
Sbjct: 80 VDNIDMAKAKELGFQITNVP---VYSYTTHAVRNMVVKAFDNNLELVEGKEAET 130
|
| >d1ygya4 d.81.2.2 (A:317-451) D-3-phosphoglycerate dehydrogenase SerA {Mycobacterium tuberculosis [TaxId: 1773]} Length = 135 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: FwdE/GAPDH domain-like superfamily: Serine metabolism enzymes domain family: SerA intervening domain-like domain: D-3-phosphoglycerate dehydrogenase SerA species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 76.1 bits (187), Expect = 3e-17
Identities = 28/148 (18%), Positives = 57/148 (38%), Gaps = 20/148 (13%)
Query: 409 EVLSELAPYVVLAKKLGRLAVQLVSGGSGIKSVKLIYRSARDPDDLDTRILRAMITKGII 468
V E+AP++ L +KLG LA L S+ + R + + +LR +G+
Sbjct: 3 VVNEEVAPWLDLVRKLGVLAGVLS--DELPVSLSVQVRG--ELAAEEVEVLRLSALRGLF 58
Query: 469 EPISASFINLVNADFTAKQKGLRISEERVVADSSPEFPIDSIQVQLSNVDSKFAAAVSEN 528
+ + VNA A ++G+ + A SP + V+ ++
Sbjct: 59 SAVIEDAVTFVNAPALAAERGVTAEICK--ASESPNHR-SVVDVRAVG---------ADG 106
Query: 529 GEISIEGKVKFG---IPHLTRVGSFGVD 553
+++ G + +G + ++ D
Sbjct: 107 SVVTVSGTL-YGPQLSQKIVQINGRHFD 133
|
| >d2naca2 c.23.12.1 (A:1-147,A:336-374) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]} Length = 186 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Formate/glycerate dehydrogenase catalytic domain-like family: Formate/glycerate dehydrogenases, substrate-binding domain domain: Formate dehydrogenase species: Pseudomonas sp., strain 101 [TaxId: 306]
Score = 74.6 bits (183), Expect = 4e-16
Identities = 31/161 (19%), Positives = 52/161 (32%), Gaps = 18/161 (11%)
Query: 74 HVSKFQDD---LNVQAVTPKPTILVSEKLGEAGLA-ILRSFGN-VECLYDLSPEA--LCE 126
+ + +A+ P L+ GE GL L S G+ + D
Sbjct: 26 KIDHYPGGQTLPTPKAIDFTPGQLLGSVSGELGLRKYLESNGHTLVVTSDKDGPDSVFER 85
Query: 127 KISQCDALIVRS--GTKVTRSVFEAANGKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPI 184
++ D +I + +T A LK+ AG+G D+VDLQ+A + V
Sbjct: 86 ELVDADVVISQPFWPAYLTPERIAKAK-NLKLALTAGIGSDHVDLQSAIDRNVTVAEVTY 144
Query: 185 ANTVAAAEH--------GIALLASMARNVSQADASIKAGKW 217
N+ I R + ++ G
Sbjct: 145 CNSTTLTAQARYAAGTREILECFFEGRPIRDEYLIVQGGAL 185
|
| >d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]} Length = 163 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Human (Homo sapiens) [TaxId: 9606]
Score = 66.9 bits (163), Expect = 1e-13
Identities = 26/127 (20%), Positives = 41/127 (32%), Gaps = 4/127 (3%)
Query: 224 GVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALAT 283
V + GK V G+G VG A+ +G G VI + A+ V +
Sbjct: 19 DVMIAGKVAVVAGYGDVGKGCAQALRGFGARVIITEIDPINALQAAMEGYEV---TTMDE 75
Query: 284 ADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNV-ARGGVIDEEALVRALDSGVVAQAA 342
A I F +MK + N+ ID + L V +
Sbjct: 76 ACQEGNIFVTTTGCIDIILGRHFEQMKDDAIVCNIGHFDVEIDVKWLNENAVEKVNIKPQ 135
Query: 343 LDVFTEE 349
+D + +
Sbjct: 136 VDRYRLK 142
|
| >d1qp8a2 c.23.12.1 (A:1-82,A:264-302) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Length = 121 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Formate/glycerate dehydrogenase catalytic domain-like family: Formate/glycerate dehydrogenases, substrate-binding domain domain: Putative formate dehydrogenase species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Score = 62.3 bits (151), Expect = 2e-12
Identities = 19/160 (11%), Positives = 40/160 (25%), Gaps = 41/160 (25%)
Query: 93 ILVSEKLGEAGLAILRSFGNVECLYDLSPEALCEKISQCDALIVRSGTKVTRSVFEAANG 152
+ V+ +L LR + + DL +++T
Sbjct: 3 LYVNFELPPEAEEELRKYFKIVRGGDLGNV------------EAALVSRITAEELAKMP- 49
Query: 153 KLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASI 212
+LK + G+D++ ++ V +N ++ R
Sbjct: 50 RLKFIQVVTAGLDHLPWESIPP-HVTVAGNAGSNGYGNERVWRQMVMEAVR--------- 99
Query: 213 KAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLG 252
L G +A+R +G
Sbjct: 100 ------------------NLITYATGGRPRNIAKREDYIG 121
|
| >d1ygya3 d.58.18.1 (A:452-529) Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain {Mycobacterium tuberculosis [TaxId: 1773]} Length = 78 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: ACT-like family: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain domain: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 60.6 bits (147), Expect = 2e-12
Identities = 15/65 (23%), Positives = 29/65 (44%)
Query: 557 EGNLILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDEEPNQDSLK 616
+G ++ VD+PG +GK+G +LG VN+ + + + +D++ D
Sbjct: 2 QGINLIIHYVDRPGALGKIGTLLGTAGVNIQAAQLSEDAEGPGATILLRLDQDVPDDVRT 61
Query: 617 EIGKV 621
I
Sbjct: 62 AIAAA 66
|
| >d1sc6a3 d.58.18.1 (A:327-410) Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain {Escherichia coli [TaxId: 562]} Length = 84 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: ACT-like family: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain domain: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain species: Escherichia coli [TaxId: 562]
Score = 56.3 bits (136), Expect = 9e-11
Identities = 14/73 (19%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
Query: 558 GNLILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDEEPNQDSLKE 617
G ++ ++PG++ + I E VN+ + + + + ++ I DE+ + +L+
Sbjct: 11 GRRLMHIHENRPGVLTALNKIFAEQGVNIAAQYLQTSAQMGYVVIDIEADEDVAEKALQA 70
Query: 618 IGKVHFV--ARIL 628
+ + AR+L
Sbjct: 71 MKAIPGTIRARLL 83
|
| >d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]} Length = 163 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]
Score = 51.4 bits (123), Expect = 2e-08
Identities = 28/111 (25%), Positives = 42/111 (37%), Gaps = 8/111 (7%)
Query: 224 GVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA-PADKARAVGVELVSFDQALA 282
+ GK + + G+G VG A KGLG V + A +A G +V+ D+ +
Sbjct: 18 DFLISGKIVVICGYGDVGKGCASSMKGLGARVYITEIDPICAIQAVMEGFNVVTLDEIVD 77
Query: 283 TADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRAL 333
DF + E KMK + N+ D+E V L
Sbjct: 78 KGDFFITC----TGNVDVIKLEHLLKMKNNAVVGNIGHF---DDEIQVNEL 121
|
| >d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]} Length = 113 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Siroheme synthase CysG, domain 1 species: Salmonella typhimurium [TaxId: 90371]
Score = 41.6 bits (97), Expect = 3e-05
Identities = 15/96 (15%), Positives = 24/96 (25%), Gaps = 1/96 (1%)
Query: 225 VSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA-PADKARAVGVELVSFDQALAT 283
L + ++G G V AR G + + P A L +
Sbjct: 8 CQLRDRDCLIVGGGDVAERKARLLLEAGARLTVNALTFIPQFTVWANEGMLTLVEGPFDE 67
Query: 284 ADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVA 319
S + + T N + NV
Sbjct: 68 TLLDSCWLAIAATDDDTVNQRVSDAAESRRIFCNVV 103
|
| >d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]} Length = 293 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Cow (Bos taurus) [TaxId: 9913]
Score = 42.8 bits (100), Expect = 7e-05
Identities = 13/52 (25%), Positives = 19/52 (36%)
Query: 208 ADASIKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHD 259
+ I+ ++ + KT AV GFG VG R G +A
Sbjct: 15 IENFIENASYMSILGMTPGFGDKTFAVQGFGNVGLHSMRYLHRFGAKCVAVG 66
|
| >d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Pyrobaculum islandicum [TaxId: 2277]
Score = 41.7 bits (97), Expect = 1e-04
Identities = 28/148 (18%), Positives = 46/148 (31%), Gaps = 6/148 (4%)
Query: 221 KYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQA 280
K + + GKT+A+ G G VG A + +G VIA + +
Sbjct: 23 KKLWGGIEGKTVAIQGMGNVGRWTAYWLEKMGAKVIAVSDINGVAYRKEGLNVELIQKNK 82
Query: 281 LATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQ 340
T + + N + K+ + + A VI + VV
Sbjct: 83 GLTGPALVELFTTKDNAEFVKNPDAIFKLDVDIFVPA-AIENVIRGDNAGLVKARLVVEG 141
Query: 341 AALDVFTEEPPAKDSKLVQHENVTVTPH 368
A P A+ ++ V V P
Sbjct: 142 ANGPT---TPEAER--ILYERGVVVVPD 164
|
| >d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Leucine dehydrogenase species: Bacillus sphaericus [TaxId: 1421]
Score = 40.4 bits (94), Expect = 3e-04
Identities = 10/48 (20%), Positives = 19/48 (39%)
Query: 217 WLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPA 264
+ + SL G ++V G G V + ++ G ++ D A
Sbjct: 27 AAKEAFGSDSLEGLAVSVQGLGNVAKALCKKLNTEGAKLVVTDVNKAA 74
|
| >d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]} Length = 201 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Phenylalanine dehydrogenase species: Rhodococcus sp., M4 [TaxId: 1831]
Score = 37.4 bits (86), Expect = 0.002
Identities = 22/103 (21%), Positives = 34/103 (33%), Gaps = 4/103 (3%)
Query: 226 SLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATAD 285
SL G T+ V G G VG +A A G ++ A AV + + +
Sbjct: 24 SLDGLTVLVQGLGAVGGSLASLAAEAGAQLL-VADTDTERVAHAVALGHTAVALEDVLST 82
Query: 286 FISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEA 328
+ P + E + V + A + DE A
Sbjct: 83 PCDVFAPCAM--GGVITTEVARTLDCSV-VAGAANNVIADEAA 122
|
| >d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Clostridium symbiosum [TaxId: 1512]
Score = 37.0 bits (85), Expect = 0.004
Identities = 14/37 (37%), Positives = 21/37 (56%)
Query: 221 KYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIA 257
K+ +LVGKT+A+ GFG V A++ LG +
Sbjct: 28 KHENDTLVGKTVALAGFGNVAWGAAKKLAELGAKAVT 64
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 628 | |||
| d1ygya1 | 184 | Phosphoglycerate dehydrogenase {Mycobacterium tube | 100.0 | |
| d1mx3a1 | 193 | Transcription corepressor CtbP {Human (Homo sapien | 100.0 | |
| d1gdha1 | 191 | D-glycerate dehydrogenase {Hyphomicrobium methylov | 100.0 | |
| d1j4aa1 | 197 | D-lactate dehydrogenase {Lactobacillus helveticus | 100.0 | |
| d2naca1 | 188 | Formate dehydrogenase {Pseudomonas sp., strain 101 | 100.0 | |
| d1dxya1 | 199 | D-2-hydroxyisocaproate dehydrogenase {Lactobacillu | 100.0 | |
| d1sc6a1 | 188 | Phosphoglycerate dehydrogenase {Escherichia coli [ | 100.0 | |
| d1qp8a1 | 181 | Putative formate dehydrogenase {Archaeon Pyrobacul | 100.0 | |
| d1ygya2 | 130 | Phosphoglycerate dehydrogenase {Mycobacterium tube | 99.95 | |
| d1ygya4 | 135 | D-3-phosphoglycerate dehydrogenase SerA {Mycobacte | 99.94 | |
| d1sc6a2 | 132 | Phosphoglycerate dehydrogenase {Escherichia coli [ | 99.9 | |
| d1gdha2 | 129 | D-glycerate dehydrogenase {Hyphomicrobium methylov | 99.89 | |
| d1qp8a2 | 121 | Putative formate dehydrogenase {Archaeon Pyrobacul | 99.85 | |
| d1dxya2 | 131 | D-2-hydroxyisocaproate dehydrogenase {Lactobacillu | 99.84 | |
| d1mx3a2 | 133 | Transcription corepressor CtbP {Human (Homo sapien | 99.83 | |
| d2naca2 | 186 | Formate dehydrogenase {Pseudomonas sp., strain 101 | 99.8 | |
| d1j4aa2 | 134 | D-lactate dehydrogenase {Lactobacillus helveticus | 99.75 | |
| d1ygya3 | 78 | Phosphoglycerate dehydrogenase, regulatory (C-term | 99.62 | |
| d1li4a1 | 163 | S-adenosylhomocystein hydrolase {Human (Homo sapie | 99.61 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 99.43 | |
| d1sc6a3 | 84 | Phosphoglycerate dehydrogenase, regulatory (C-term | 99.38 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 99.34 | |
| d1v8ba1 | 163 | S-adenosylhomocystein hydrolase {Plasmodium falcip | 99.31 | |
| d1vpda2 | 161 | Hydroxyisobutyrate dehydrogenase {Salmonella typhi | 99.29 | |
| d3cuma2 | 162 | Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru | 99.17 | |
| d2pgda2 | 176 | 6-phosphogluconate dehydrogenase {Sheep (Ovis orie | 98.96 | |
| d2cvza2 | 156 | Hydroxyisobutyrate dehydrogenase {Thermus thermoph | 98.86 | |
| d1i36a2 | 152 | Conserved hypothetical protein MTH1747 {Archaeon M | 98.82 | |
| d2pv7a2 | 152 | Prephenate dehydrogenase TyrA {Haemophilus influen | 98.73 | |
| d2ahra2 | 152 | Pyrroline-5-carboxylate reductase ProC {Streptococ | 98.71 | |
| d1pgja2 | 178 | 6-phosphogluconate dehydrogenase {Trypanosoma bruc | 98.58 | |
| d2iafa1 | 145 | L-serine dehydratase SdhL, N-terminal domain {Legi | 98.53 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 98.43 | |
| d1c1da1 | 201 | Phenylalanine dehydrogenase {Rhodococcus sp., M4 [ | 98.4 | |
| d2i76a2 | 153 | Hypothetical protein TM1727 {Thermotoga maritima [ | 98.29 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 98.29 | |
| d1l7da1 | 183 | Nicotinamide nucleotide transhydrogenase dI compon | 98.28 | |
| d1np3a2 | 182 | Class I ketol-acid reductoisomerase (KARI) {Pseudo | 98.24 | |
| d1yqga2 | 152 | Pyrroline-5-carboxylate reductase ProC {Neisseria | 98.21 | |
| d1pjqa1 | 113 | Siroheme synthase CysG, domain 1 {Salmonella typhi | 98.15 | |
| d1gpja2 | 159 | Glutamyl tRNA-reductase middle domain {Archaeon Me | 98.14 | |
| d1qmga2 | 226 | Class II ketol-acid reductoisomerase (KARI) {Spina | 98.02 | |
| d1f0ya2 | 192 | Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum | 97.97 | |
| d1leha1 | 230 | Leucine dehydrogenase {Bacillus sphaericus [TaxId: | 97.83 | |
| d1mv8a2 | 202 | GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos | 97.8 | |
| d2jfga1 | 93 | UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase | 97.75 | |
| d1wdka3 | 186 | Fatty oxidation complex alpha subunit, middle doma | 97.75 | |
| d1dlja2 | 196 | UDP-glucose dehydrogenase (UDPGDH) {Streptococcus | 97.73 | |
| d1edza1 | 171 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 97.72 | |
| d1ks9a2 | 167 | Ketopantoate reductase PanE {Escherichia coli [Tax | 97.69 | |
| d1txga2 | 180 | Glycerol-3- phosphate dehydrogenase {Archaeoglobus | 97.67 | |
| d2pc6a2 | 77 | Acetolactate synthase small subunit, IlvH {Nitroso | 97.6 | |
| d1a4ia1 | 170 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 97.57 | |
| d1b0aa1 | 166 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 97.55 | |
| d2f1fa1 | 76 | Acetolactate synthase small subunit, IlvH {Escheri | 97.54 | |
| d2fgca2 | 78 | Acetolactate synthase small subunit, IlvH {Thermot | 97.53 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 97.53 | |
| d1j5pa4 | 132 | Hypothetical protein TM1643 {Thermotoga maritima [ | 97.31 | |
| d1n1ea2 | 189 | Glycerol-3- phosphate dehydrogenase {Trypanosome ( | 97.3 | |
| d2f06a1 | 71 | Hypothetical protein BT0572 {Bacteroides thetaiota | 97.29 | |
| d1y7pa2 | 77 | Hypothetical protein AF1403, N-terminal domain {Ar | 97.18 | |
| d1bgva1 | 255 | Glutamate dehydrogenase {Clostridium symbiosum [Ta | 97.11 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 97.05 | |
| d1v9la1 | 242 | Glutamate dehydrogenase {Pyrobaculum islandicum [T | 96.97 | |
| d1tlta1 | 164 | Virulence factor MviM {Escherichia coli [TaxId: 56 | 96.96 | |
| d1e5qa1 | 182 | Saccharopine reductase {Rice blast fungus (Magnapo | 96.93 | |
| d1b26a1 | 234 | Glutamate dehydrogenase {Thermotoga maritima [TaxI | 96.91 | |
| d1gtma1 | 239 | Glutamate dehydrogenase {Archaeon Pyrococcus furio | 96.91 | |
| d2f06a2 | 70 | Hypothetical protein BT0572 {Bacteroides thetaiota | 96.86 | |
| d1ldna1 | 148 | Lactate dehydrogenase {Bacillus stearothermophilus | 96.86 | |
| d1nyta1 | 170 | Shikimate 5-dehydrogenase AroE {Escherichia coli [ | 96.86 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 96.83 | |
| d1zpva1 | 83 | UPF0237 protein SP0238 {Streptococcus pneumoniae [ | 96.82 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 96.81 | |
| d1hyha1 | 146 | L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La | 96.81 | |
| d1pzga1 | 154 | Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5 | 96.76 | |
| d1guza1 | 142 | Malate dehydrogenase {Chlorobium vibrioforme [TaxI | 96.73 | |
| d1kjqa2 | 111 | Glycinamide ribonucleotide transformylase PurT, N- | 96.72 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 96.67 | |
| d1xeaa1 | 167 | Putative oxidoreductase VCA1048 {Vibrio cholerae [ | 96.66 | |
| d1y6ja1 | 142 | Lactate dehydrogenase {Clostridium thermocellum [T | 96.63 | |
| d1f06a1 | 170 | Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb | 96.62 | |
| d1mv8a3 | 136 | GDP-mannose 6-dehydrogenase, GDP-binding domain {P | 96.6 | |
| d1vi2a1 | 182 | Putative shikimate dehydrogenase YdiB {Escherichia | 96.59 | |
| d1a5za1 | 140 | Lactate dehydrogenase {Thermotoga maritima [TaxId: | 96.58 | |
| d1hwxa1 | 293 | Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: | 96.58 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 96.58 | |
| d1t2da1 | 150 | Lactate dehydrogenase {Malaria parasite (Plasmodiu | 96.51 | |
| d1u8sa1 | 86 | putative transcriptional repressor VC2159 {Vibrio | 96.5 | |
| d2b0ja2 | 242 | 5,10-methenyltetrahydromethanopterin hydrogenase, | 96.45 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 96.42 | |
| d1luaa1 | 191 | Methylene-tetrahydromethanopterin dehydrogenase {M | 96.3 | |
| d1nvmb1 | 157 | Acetaldehyde dehydrogenase (acylating) {Pseudomona | 96.28 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 96.18 | |
| d1nvta1 | 177 | Shikimate 5-dehydrogenase AroE {Archaeon Methanoco | 96.17 | |
| d1u8sa2 | 93 | putative transcriptional repressor VC2159 {Vibrio | 96.13 | |
| d1i0za1 | 160 | Lactate dehydrogenase {Human (Homo sapiens), heart | 96.1 | |
| d1hdoa_ | 205 | Biliverdin IX beta reductase {Human (Homo sapiens) | 96.02 | |
| d1ydwa1 | 184 | Probable oxidoreductase At4g09670 {Thale cress (Ar | 96.0 | |
| d3etja2 | 78 | N5-carboxyaminoimidazole ribonucleotide synthetase | 95.99 | |
| d1x7da_ | 340 | Ornithine cyclodeaminase {Pseudomonas putida [TaxI | 95.92 | |
| d1b7go1 | 178 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 95.91 | |
| d1ojua1 | 142 | Malate dehydrogenase {Archaeon Archaeoglobus fulgi | 95.89 | |
| d1ez4a1 | 146 | Lactate dehydrogenase {Lactobacillus pentosus [Tax | 95.84 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 95.78 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 95.75 | |
| d1p3da1 | 96 | UDP-N-acetylmuramate-alanine ligase MurC {Haemophi | 95.72 | |
| d1uxja1 | 142 | Malate dehydrogenase {Chloroflexus aurantiacus [Ta | 95.71 | |
| d1kyqa1 | 150 | Bifunctional dehydrogenase/ferrochelatase Met8p, N | 95.68 | |
| d1zh8a1 | 181 | Hypothetical protein TM0312 {Thermotoga maritima [ | 95.67 | |
| d1npya1 | 167 | Shikimate 5-dehydrogenase-like protein HI0607 {Hae | 95.65 | |
| d1cf2o1 | 171 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 95.42 | |
| d1omoa_ | 320 | Archaeal alanine dehydrogenase {Archaeon Archaeogl | 95.41 | |
| d1jaya_ | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae | 95.41 | |
| d1p77a1 | 171 | Shikimate 5-dehydrogenase AroE {Haemophilus influe | 95.35 | |
| d1mlda1 | 144 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 95.32 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 95.31 | |
| d2qmwa2 | 80 | Prephenate dehydratase C-terminal domain {Staphylo | 95.3 | |
| d1h6da1 | 221 | Glucose-fructose oxidoreductase, N-terminal domain | 95.19 | |
| d1llda1 | 143 | Lactate dehydrogenase {Bifidobacterium longum, str | 95.19 | |
| d2ldxa1 | 159 | Lactate dehydrogenase {Mouse (Mus musculus) [TaxId | 95.19 | |
| d1j6ua1 | 89 | UDP-N-acetylmuramate-alanine ligase MurC {Thermoto | 95.08 | |
| d1otha2 | 170 | Ornithine transcarbamoylase {Human (Homo sapiens) | 94.99 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 94.97 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 94.87 | |
| d1pvva2 | 163 | Ornithine transcarbamoylase {Archaeon Pyrococcus f | 94.86 | |
| d1lc0a1 | 172 | Biliverdin reductase {Rat (Rattus norvegicus) [Tax | 94.82 | |
| d1pg5a2 | 153 | Aspartate carbamoyltransferase catalytic subunit { | 94.75 | |
| d2czca2 | 172 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 94.73 | |
| d1iz0a2 | 171 | Quinone oxidoreductase {Thermus thermophilus [TaxI | 94.69 | |
| d1dlja3 | 108 | UDP-glucose dehydrogenase (UDPGDH), C-terminal (UD | 94.64 | |
| d1up7a1 | 162 | 6-phospho-beta-glucosidase {Thermotoga maritima [T | 94.26 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 94.24 | |
| d2fy8a1 | 129 | Potassium channel-related protein MthK {Archaeon M | 94.21 | |
| d1s6ya1 | 169 | 6-phospho-beta-glucosidase {Bacillus stearothermop | 94.2 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 94.06 | |
| d1id1a_ | 153 | Rck domain from putative potassium channel Kch {Es | 94.04 | |
| d1y81a1 | 116 | Hypothetical protein PF0725 {Pyrococcus furiosus [ | 93.68 | |
| d1vlva2 | 161 | Ornithine transcarbamoylase {Thermotoga maritima [ | 93.67 | |
| d1vjta1 | 193 | Putative alpha-glucosidase TM0752 {Thermotoga mari | 93.47 | |
| d1l7da2 | 194 | Nicotinamide nucleotide transhydrogenase dI compon | 93.44 | |
| d1gtea4 | 196 | Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su | 93.39 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 93.26 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 93.17 | |
| d1hyea1 | 145 | MJ0490, lactate/malate dehydrogenase {Archaeon Met | 93.07 | |
| d1iuka_ | 136 | Hypothetical protein TT1466 {Thermus thermophilus | 93.04 | |
| d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 92.96 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 92.86 | |
| d1ml4a2 | 157 | Aspartate carbamoyltransferase catalytic subunit { | 92.7 | |
| d1dxha2 | 185 | Ornithine transcarbamoylase {Pseudomonas aeruginos | 92.16 | |
| d2d59a1 | 139 | Hypothetical protein PH1109 {Pyrococcus horikoshii | 92.14 | |
| d2at2a2 | 151 | Aspartate carbamoyltransferase catalytic subunit { | 92.07 | |
| d1seza1 | 373 | Protoporphyrinogen oxidase {Tobacco (Nicotiana tab | 91.87 | |
| d1obba1 | 171 | Alpha-glucosidase AglA {Thermotoga maritima [TaxId | 91.83 | |
| d1ae1a_ | 258 | Tropinone reductase {Jimsonweed (Datura stramonium | 91.75 | |
| d2csua1 | 129 | Acetate-CoA ligase alpha chain, AcdA, N-terminal d | 91.4 | |
| d1onfa2 | 117 | Glutathione reductase {Plasmodium falciparum [TaxI | 91.38 | |
| d1o6za1 | 142 | Malate dehydrogenase {Archaeon Haloarcula marismor | 91.37 | |
| d2fzwa2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 91.26 | |
| d1v59a2 | 122 | Dihydrolipoamide dehydrogenase {Baker's yeast (Sac | 91.26 | |
| d2cmda1 | 145 | Malate dehydrogenase {Escherichia coli [TaxId: 562 | 91.23 | |
| d2o23a1 | 248 | Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho | 91.21 | |
| d2nvwa1 | 237 | Galactose/lactose metabolism regulatory protein GA | 90.98 | |
| d1gesa2 | 116 | Glutathione reductase {Escherichia coli [TaxId: 56 | 90.96 | |
| d1ekxa2 | 160 | Aspartate carbamoyltransferase catalytic subunit { | 90.86 | |
| d1ebda2 | 117 | Dihydrolipoamide dehydrogenase {Bacillus stearothe | 90.72 | |
| d2pd4a1 | 274 | Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2 | 90.59 | |
| d1mo9a2 | 121 | NADH-dependent 2-ketopropyl coenzyme M oxidoreduct | 90.46 | |
| d1fcda1 | 186 | Flavocytochrome c sulfide dehydrogenase, FCSD, fla | 90.41 | |
| d1h5qa_ | 260 | Mannitol dehydrogenase {Mushroom (Agaricus bisporu | 90.3 | |
| d1ydea1 | 250 | Retinal dehydrogenase/reductase 3 {Human (Homo sap | 90.22 | |
| d3grsa2 | 125 | Glutathione reductase {Human (Homo sapiens) [TaxId | 90.11 | |
| d1yb1a_ | 244 | 17-beta-hydroxysteroid dehydrogenase type XI {Huma | 90.08 | |
| d1cyda_ | 242 | Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1 | 89.98 | |
| d1hdca_ | 254 | 3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre | 89.8 | |
| d1ulua_ | 256 | Enoyl-ACP reductase {Thermus thermophilus [TaxId: | 89.68 | |
| d1vl8a_ | 251 | Gluconate 5-dehydrogenase {Thermotoga maritima [Ta | 89.48 | |
| d1t4ba1 | 146 | Aspartate beta-semialdehyde dehydrogenase {Escheri | 89.44 | |
| d1h6va2 | 122 | Mammalian thioredoxin reductase {Rat (Rattus norve | 89.32 | |
| d1qyda_ | 312 | Pinoresinol-lariciresinol reductase {Giant arborvi | 89.32 | |
| d1nhpa2 | 123 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 89.2 | |
| d1phza1 | 97 | Phenylalanine hydroxylase N-terminal domain {Rat ( | 89.18 | |
| d1xgka_ | 350 | Negative transcriptional regulator NmrA {Aspergill | 89.04 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 89.02 | |
| d3lada2 | 119 | Dihydrolipoamide dehydrogenase {Azotobacter vinela | 88.87 | |
| d2q46a1 | 252 | Hypothetical protein At5g02240 (T7H20_290) {Thale | 88.85 | |
| d1qora2 | 179 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 88.79 | |
| d1d7ya2 | 121 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 88.64 | |
| d1dxla2 | 123 | Dihydrolipoamide dehydrogenase {Garden pea (Pisum | 88.61 | |
| d1pr9a_ | 244 | Carbonyl reductase {Human (Homo sapiens) [TaxId: 9 | 88.55 | |
| d1q7ba_ | 243 | beta-keto acyl carrier protein reductase {Escheric | 88.5 | |
| d1ps9a3 | 179 | 2,4-dienoyl-CoA reductase, middle domain {Escheric | 88.21 | |
| d2a4ka1 | 241 | beta-keto acyl carrier protein reductase {Thermus | 88.18 | |
| d1v3va2 | 182 | Leukotriene b4 12-hydroxydehydrogenase/prostagland | 87.98 | |
| d1diha1 | 162 | Dihydrodipicolinate reductase {Escherichia coli [T | 87.93 | |
| d1xhca2 | 122 | NADH oxidase /nitrite reductase {Pyrococcus furios | 87.78 | |
| d1u8xx1 | 167 | Maltose-6'-phosphate glucosidase GlvA {Bacillus su | 87.75 | |
| d1ojta2 | 125 | Dihydrolipoamide dehydrogenase {Neisseria meningit | 87.7 | |
| d1pjca2 | 193 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 87.54 | |
| d1nffa_ | 244 | Putative oxidoreductase Rv2002 {Mycobacterium tube | 87.53 | |
| d1vl6a1 | 222 | Malate oxidoreductase (malic enzyme) {Thermotoga m | 87.48 | |
| d1vm6a3 | 128 | Dihydrodipicolinate reductase {Thermotoga maritima | 87.33 | |
| d1iy8a_ | 258 | Levodione reductase {Corynebacterium aquaticum [Ta | 87.22 | |
| d2ew8a1 | 247 | (s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb | 86.72 | |
| d1c0pa1 | 268 | D-aminoacid oxidase, N-terminal domain {Rhodotorul | 86.72 | |
| d1lvla2 | 115 | Dihydrolipoamide dehydrogenase {Pseudomonas putida | 86.64 | |
| d5mdha1 | 154 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 86.6 | |
| d1db3a_ | 357 | GDP-mannose 4,6-dehydratase {Escherichia coli [Tax | 86.52 | |
| d1ulsa_ | 242 | beta-keto acyl carrier protein reductase {Thermus | 86.47 | |
| d1q1ra2 | 133 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 86.44 | |
| d1o5ia_ | 234 | beta-keto acyl carrier protein reductase {Thermoto | 86.27 | |
| d2iida1 | 370 | L-aminoacid oxidase {Malayan pit viper (Calloselas | 86.25 | |
| d2hjsa1 | 144 | Usg-1 protein homolog PA3116 {Pseudomonas aerugino | 86.13 | |
| d1w6ua_ | 294 | 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H | 86.1 | |
| d2bgka1 | 268 | Rhizome secoisolariciresinol dehydrogenase {Mayapp | 85.96 | |
| d1xu9a_ | 269 | 11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom | 85.94 | |
| d1jw9b_ | 247 | Molybdenum cofactor biosynthesis protein MoeB {Esc | 85.88 | |
| d1dssg1 | 169 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 85.83 | |
| d1qsga_ | 258 | Enoyl-ACP reductase {Escherichia coli [TaxId: 562] | 85.72 | |
| d1duvg2 | 183 | Ornithine transcarbamoylase {Escherichia coli [Tax | 85.63 | |
| d1cdoa2 | 175 | Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI | 85.46 | |
| d1mb4a1 | 147 | Aspartate beta-semialdehyde dehydrogenase {Vibrio | 85.4 | |
| d1d7oa_ | 297 | Enoyl-ACP reductase {Oil seed rape (Brassica napus | 85.28 | |
| d1tt7a2 | 167 | Hypothetical protein YhfP {Bacillus subtilis [TaxI | 85.25 | |
| d1vkna1 | 176 | N-acetyl-gamma-glutamyl-phosphate reductase ArgC { | 85.11 | |
| d1yxma1 | 297 | Peroxisomal trans 2-enoyl CoA reductase {Human (Ho | 84.94 | |
| d1sbya1 | 254 | Drosophila alcohol dehydrogenase {Fly (Drosophila | 84.87 | |
| d1xq1a_ | 259 | Tropinone reductase {Thale cress (Arabidopsis thal | 84.69 | |
| d2gz1a1 | 154 | Aspartate beta-semialdehyde dehydrogenase {Strepto | 84.56 | |
| d1zk4a1 | 251 | R-specific alcohol dehydrogenase {Lactobacillus br | 84.53 | |
| d1qyca_ | 307 | Phenylcoumaran benzylic ether reductase {Loblolly | 84.12 | |
| d2g82a1 | 168 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 84.09 | |
| d2h7ma1 | 268 | Enoyl-ACP reductase {Mycobacterium tuberculosis, T | 84.0 | |
| d2dt5a2 | 126 | Transcriptional repressor Rex, C-terminal domain { | 83.96 | |
| d1yl7a1 | 135 | Dihydrodipicolinate reductase {Mycobacterium tuber | 83.78 | |
| d1gz6a_ | 302 | (3R)-hydroxyacyl-CoA dehydrogenase domain of estra | 83.72 | |
| d2voua1 | 265 | Dihydroxypyridine hydroxylase DhpH {Arthrobacter n | 83.64 | |
| d1hxha_ | 253 | 3beta/17beta hydroxysteroid dehydrogenase {Comamon | 83.42 | |
| d1xg5a_ | 257 | Putative dehydrogenase ARPG836 (MGC4172) {Human (H | 83.37 | |
| d1k2wa_ | 256 | Sorbitol dehydrogenase {Rhodobacter sphaeroides [T | 83.31 | |
| d1djqa3 | 233 | Trimethylamine dehydrogenase, middle domain {Methy | 83.21 | |
| d2bi7a1 | 314 | UDP-galactopyranose mutase, N-terminal domain {Kle | 83.09 | |
| d1bdba_ | 276 | Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps | 82.76 | |
| d1vj1a2 | 187 | Putative zinc-binding alcohol dehydrogenase {Mouse | 82.47 | |
| d1gu7a2 | 189 | 2,4-dienoyl-CoA reductase {Yeast (Candida tropical | 81.94 | |
| d1rkxa_ | 356 | CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc | 81.92 | |
| d1vl0a_ | 281 | DTDP-4-dehydrorhamnose reductase RfbD {Clostridium | 81.81 | |
| d2gdza1 | 254 | 15-hydroxyprostaglandin dehydrogenase, PGDH {Human | 81.62 | |
| d1hdgo1 | 169 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 81.6 | |
| d2ae2a_ | 259 | Tropinone reductase {Jimsonweed (Datura stramonium | 81.31 | |
| d1zema1 | 260 | Xylitol dehydrogenase {Gluconobacter oxydans [TaxI | 81.22 | |
| d1gado1 | 166 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 81.16 | |
| d1rm4a1 | 172 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 81.06 | |
| d2ivda1 | 347 | Protoporphyrinogen oxidase {Myxococcus xanthus [Ta | 81.06 | |
| d1geea_ | 261 | Glucose dehydrogenase {Bacillus megaterium [TaxId: | 80.81 | |
| d1fmca_ | 255 | 7-alpha-hydroxysteroid dehydrogenase {Escherichia | 80.78 | |
| d2g17a1 | 179 | N-acetyl-gamma-glutamyl-phosphate reductase ArgC { | 80.39 | |
| d1x1ta1 | 260 | D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas | 80.11 | |
| d2d1ya1 | 248 | Hypothetical protein TTHA0369 {Thermus thermophilu | 80.09 |
| >d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=100.00 E-value=6.3e-51 Score=395.27 Aligned_cols=184 Identities=47% Similarity=0.783 Sum_probs=178.1
Q ss_pred ChhhHHHHHHHHHHHHHHchhHHHHHHHcCcccccccceeeecCCeEEEEecChhHHHHHHHHHcCCCEEEEECCCCChh
Q 006864 186 NTVAAAEHGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPAD 265 (628)
Q Consensus 186 ~~~avAE~~l~l~L~~~R~i~~~~~~~~~g~W~~~~~~g~~l~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~ 265 (628)
|+.+||||+++|||++.|+++++++.+++|.|.+..+.+.++.||++||+|+|+||+.+|+++++|||+|++|||+....
T Consensus 1 N~~sVAE~~~~liL~~~R~i~~~~~~~~~~~W~~~~~~~~~l~~k~vgiiG~G~IG~~va~~~~~fg~~v~~~d~~~~~~ 80 (184)
T d1ygya1 1 NIHSAAEHALALLLAASRQIPAADASLREHTWKRSSFSGTEIFGKTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPYVSPA 80 (184)
T ss_dssp SHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCGGGCCBCCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECTTSCHH
T ss_pred CchHHHHHHHHHHHHHHcCHHHHHHHHHhCCCCccccccccccceeeeeccccchhHHHHHHhhhccceEEeecCCCChh
Confidence 67899999999999999999999999999999987788999999999999999999999999999999999999998877
Q ss_pred HHHHcCCcccCHHHHhccCCEEEEcCCCCccccccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhCCCeeEEEeec
Q 006864 266 KARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDV 345 (628)
Q Consensus 266 ~a~~~g~~~~sl~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~ga~lDV 345 (628)
.....+++..+++|++++||+|++|||+|++|++|||++.|++||+|++|||+|||++|||+||+++|++|+|+||+|||
T Consensus 81 ~~~~~~~~~~~l~ell~~sDiv~~~~Plt~~T~~lin~~~l~~mk~~a~lIN~sRG~iVde~aL~~aL~~~~i~~a~lDV 160 (184)
T d1ygya1 81 RAAQLGIELLSLDDLLARADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAARGGLVDEAALADAITGGHVRAAGLDV 160 (184)
T ss_dssp HHHHHTCEECCHHHHHHHCSEEEECCCCSTTTTTCBCHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHTSSEEEEEESS
T ss_pred HHhhcCceeccHHHHHhhCCEEEEcCCCCchhhhhhhHHHHhhhCCCceEEEecchhhhhhHHHHHHHhcCcEeEEEEeC
Confidence 77778888889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCccccCCcEEEcCCCC
Q 006864 346 FTEEPPAKDSKLVQHENVTVTPHLG 370 (628)
Q Consensus 346 ~~~EP~~~~~~L~~~~nvilTPHig 370 (628)
|++||++ ++|||++|||++|||+|
T Consensus 161 ~~~EP~~-~~~l~~~~nviiTPHIG 184 (184)
T d1ygya1 161 FATEPCT-DSPLFELAQVVVTPHLG 184 (184)
T ss_dssp CSSSSCS-CCGGGGCTTEEECSSCS
T ss_pred CCCCCCC-CchHhcCCCEEECCCCC
Confidence 9999985 89999999999999997
|
| >d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Transcription corepressor CtbP species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]
Probab=100.00 E-value=1.2e-48 Score=381.68 Aligned_cols=184 Identities=33% Similarity=0.544 Sum_probs=172.2
Q ss_pred hhHHHHHHHHHHHHHHchhHHHHHHHcCccccc-------ccceeeecCCeEEEEecChhHHHHHHHHHcCCCEEEEECC
Q 006864 188 VAAAEHGIALLASMARNVSQADASIKAGKWLRS-------KYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDP 260 (628)
Q Consensus 188 ~avAE~~l~l~L~~~R~i~~~~~~~~~g~W~~~-------~~~g~~l~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~ 260 (628)
++||||++++||+++|++...++.+|+|.|.+. ...|.+|+|||+||||+|+||+.+|++|++|||+|++|||
T Consensus 1 e~VAE~ai~liL~l~R~i~~~~~~~~~g~w~~~~~~~~~~~~~~~eL~gktvgIiG~G~IG~~va~~l~~fg~~v~~~d~ 80 (193)
T d1mx3a1 1 EETADSTLCHILNLYRRATWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLGRVGQAVALRAKAFGFNVLFYDP 80 (193)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHHTTCCCCSHHHHHHHTTTCCCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECT
T ss_pred CcHHHHHHHHHHHHHhCHHHHHHHHHcCCcccccccccccccCceeeeCceEEEeccccccccceeeeeccccceeeccC
Confidence 589999999999999999999999999999864 2458899999999999999999999999999999999999
Q ss_pred CCChhHHHHcCCcc-cCHHHHhccCCEEEEcCCCCccccccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhCCCee
Q 006864 261 YAPADKARAVGVEL-VSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVA 339 (628)
Q Consensus 261 ~~~~~~a~~~g~~~-~sl~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~ 339 (628)
+.........++.. .+|++++++||+|++|+|+|++|++|||++.|++||+|++|||+|||++||++||+++|++|+|.
T Consensus 81 ~~~~~~~~~~~~~~~~~l~~ll~~sD~i~~~~plt~~T~~li~~~~l~~mk~~a~lIN~sRG~ivde~aL~~aL~~~~i~ 160 (193)
T d1mx3a1 81 YLSDGVERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGGLVDEKALAQALKEGRIR 160 (193)
T ss_dssp TSCTTHHHHHTCEECSSHHHHHHHCSEEEECCCCCTTCTTSBSHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHHTSEE
T ss_pred cccccchhhhccccccchhhccccCCEEEEeecccccchhhhhHHHHhccCCCCeEEecCCceEEcHHHHHHHHHcCCce
Confidence 97666666667754 48999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeeccCCCCCC-CCCccccCCcEEEcCCCCC
Q 006864 340 QAALDVFTEEPPA-KDSKLVQHENVTVTPHLGA 371 (628)
Q Consensus 340 ga~lDV~~~EP~~-~~~~L~~~~nvilTPHig~ 371 (628)
||++|||+.||++ .++||+++|||++|||+|+
T Consensus 161 ~a~lDV~~~EP~~~~~~~l~~~~nvi~TPHiA~ 193 (193)
T d1mx3a1 161 GAALDVHESEPFSFSQGPLKDAPNLICTPHAAW 193 (193)
T ss_dssp EEEESCCSSSSCCTTSSTTTTCSSEEECSSCTT
T ss_pred EEEEEcCCCCCCCCCchhHHcCCCEEEcCCcCc
Confidence 9999999999986 5789999999999999986
|
| >d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-glycerate dehydrogenase species: Hyphomicrobium methylovorum [TaxId: 84]
Probab=100.00 E-value=2.2e-48 Score=379.30 Aligned_cols=185 Identities=34% Similarity=0.546 Sum_probs=169.9
Q ss_pred hhhHHHHHHHHHHHHHHchhHHHHHHHcCcccc---cccceeeecCCeEEEEecChhHHHHHHHHHcCCCEEEEECCCCC
Q 006864 187 TVAAAEHGIALLASMARNVSQADASIKAGKWLR---SKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAP 263 (628)
Q Consensus 187 ~~avAE~~l~l~L~~~R~i~~~~~~~~~g~W~~---~~~~g~~l~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~ 263 (628)
+.+||||+++|||+++|+++++++.+|+|.|.. ..+.|.+++|||+||||+|+||+.+|+++++|||+|++||++..
T Consensus 2 t~AvAE~ai~liL~~~R~i~~~~~~~r~g~w~~~~~~~~~~~~l~g~tvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~~ 81 (191)
T d1gdha1 2 TVATAEIAMLLLLGSARRAGEGEKMIRTRSWPGWEPLELVGEKLDNKTLGIYGFGSIGQALAKRAQGFDMDIDYFDTHRA 81 (191)
T ss_dssp HHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCCTTTTCBCCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSCC
T ss_pred CHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCcCCccccccceecccceEEeecccchHHHHHHHHhhcccccccccccc
Confidence 578999999999999999999999999999964 24578999999999999999999999999999999999999764
Q ss_pred -hhHHHH-cCCcccCHHHHhccCCEEEEcCCCCccccccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhCCCeeEE
Q 006864 264 -ADKARA-VGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQA 341 (628)
Q Consensus 264 -~~~a~~-~g~~~~sl~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~ga 341 (628)
...... .+....+|++++++||+|++|+|+|++|++|||++.|++||+|++|||+|||++|||+||+++|++|+|.||
T Consensus 82 ~~~~~~~~~~~~~~~l~~ll~~sD~v~l~~plt~~T~~li~~~~l~~mk~~a~lIN~sRG~ivde~aL~~aL~~g~i~~a 161 (191)
T d1gdha1 82 SSSDEASYQATFHDSLDSLLSVSQFFSLNAPSTPETRYFFNKATIKSLPQGAIVVNTARGDLVDNELVVAALEAGRLAYA 161 (191)
T ss_dssp CHHHHHHHTCEECSSHHHHHHHCSEEEECCCCCTTTTTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEE
T ss_pred ccchhhcccccccCCHHHHHhhCCeEEecCCCCchHhheecHHHhhCcCCccEEEecCCccchhhHHHHHHHHcCCceEE
Confidence 222223 334556899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeccCCCCCCCCCccccCCcEEEcCCCCCC
Q 006864 342 ALDVFTEEPPAKDSKLVQHENVTVTPHLGAS 372 (628)
Q Consensus 342 ~lDV~~~EP~~~~~~L~~~~nvilTPHig~~ 372 (628)
++|||+.||+ .++|||++|||++|||+|++
T Consensus 162 ~lDV~~~EP~-~~~~l~~~~nvi~TPHiasa 191 (191)
T d1gdha1 162 GFDVFAGEPN-INEGYYDLPNTFLFPHIGSA 191 (191)
T ss_dssp EESCCTTTTS-CCTTGGGCTTEEECSSCTTC
T ss_pred EEECCCCCCC-CCchHHcCCCEEECCccccC
Confidence 9999999995 58899999999999999985
|
| >d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-lactate dehydrogenase species: Lactobacillus helveticus [TaxId: 1587]
Probab=100.00 E-value=2e-47 Score=374.04 Aligned_cols=183 Identities=33% Similarity=0.476 Sum_probs=169.9
Q ss_pred hhHHHHHHHHHHHHHHchhHHHHHHHcCcccccccceeeecCCeEEEEecChhHHHHHHHHHcCCCEEEEECCCCChhHH
Q 006864 188 VAAAEHGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKA 267 (628)
Q Consensus 188 ~avAE~~l~l~L~~~R~i~~~~~~~~~g~W~~~~~~g~~l~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a 267 (628)
++||||++++||++.|+++..++.+++|+|.+..+.|.+|+|||+||||+|+||+.+|++|++|||+|++|||+.....
T Consensus 2 ~aVAE~~l~~~l~l~r~~~~~~~~~~~~~~~w~~~~g~el~gk~vgIiG~G~IG~~va~~l~~fg~~V~~~d~~~~~~~- 80 (197)
T d1j4aa1 2 NAIAEHAAIQAARILRQDKAMDEKVARHDLRWAPTIGREVRDQVVGVVGTGHIGQVFMQIMEGFGAKVITYDIFRNPEL- 80 (197)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHHTTBCCCTTCCBCCGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCHHH-
T ss_pred CHHHHHHHHHHHHHHhCcHHHHHHHHhCCCCcCCCcCccccCCeEEEecccccchhHHHhHhhhcccccccCccccccc-
Confidence 6899999999999999999999999999988777789999999999999999999999999999999999999876443
Q ss_pred HHcCCcccCHHHHhccCCEEEEcCCCCccccccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhCCCeeEEEeeccC
Q 006864 268 RAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFT 347 (628)
Q Consensus 268 ~~~g~~~~sl~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~ga~lDV~~ 347 (628)
...++...+|++++++||+|++|+|+|++|+++||++.|++||+|++|||+|||++||++||+++|++|++.||++|||+
T Consensus 81 ~~~~~~~~~l~~~l~~sDii~~~~plt~~T~~li~~~~l~~mk~~a~lIN~sRG~ivde~aL~~aL~~~~i~~a~lDV~~ 160 (197)
T d1j4aa1 81 EKKGYYVDSLDDLYKQADVISLHVPDVPANVHMINDESIAKMKQDVVIVNVSRGPLVDTDAVIRGLDSGKIFGYAMDVYE 160 (197)
T ss_dssp HHTTCBCSCHHHHHHHCSEEEECSCCCGGGTTCBSHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCT
T ss_pred ccceeeeccccccccccccccccCCccccccccccHHHHhhhCCccEEEecCchhhhhhHHHHHHHhcccchheeeeccc
Confidence 34466677999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCC-------------CCCCccccCCcEEEcCCCCC
Q 006864 348 EEPP-------------AKDSKLVQHENVTVTPHLGA 371 (628)
Q Consensus 348 ~EP~-------------~~~~~L~~~~nvilTPHig~ 371 (628)
.||. +.++||+.+|||++|||+|+
T Consensus 161 ~Ep~~~~~~~~~~~~p~~~~~~L~~~~nviiTPHiA~ 197 (197)
T d1j4aa1 161 GEVGIFNEDWEGKEFPDARLADLIARPNVLVTPKTAF 197 (197)
T ss_dssp TCTTTTTSBCTTSCCSCHHHHHHHHCTTEEECSSCTT
T ss_pred cCCcccccccccccCCccchhhhhcCCCEEeCcccCc
Confidence 9953 33467999999999999985
|
| >d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Formate dehydrogenase species: Pseudomonas sp., strain 101 [TaxId: 306]
Probab=100.00 E-value=3.6e-47 Score=369.91 Aligned_cols=184 Identities=28% Similarity=0.450 Sum_probs=170.9
Q ss_pred hhHHHHHHHHHHHHHHchhHHHHHHHcCcccccc--cceeeecCCeEEEEecChhHHHHHHHHHcCCCEEEEECCCC-Ch
Q 006864 188 VAAAEHGIALLASMARNVSQADASIKAGKWLRSK--YVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA-PA 264 (628)
Q Consensus 188 ~avAE~~l~l~L~~~R~i~~~~~~~~~g~W~~~~--~~g~~l~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~-~~ 264 (628)
.+||||+++++|+++|++.++++.+++|+|++.. ..+.++.|+++||||+|+||+.+|++|++|||+|.+||++. +.
T Consensus 1 isVAE~~l~~iL~~~R~~~~~~~~~~~g~w~~~~~~~~~~~l~~~~vgiiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~ 80 (188)
T d2naca1 1 ISVAEHVVMMILSLVRNYLPSHEWARKGGWNIADCVSHAYDLEAMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRLPE 80 (188)
T ss_dssp HHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHTTCCCCTTCEEEEECCSHHHHHHHHHHGGGTCEEEEECSSCCCH
T ss_pred CcHHHHHHHHHHHHHhCHHHHHHHHHhCCCCCcccCCcceeccccceeeccccccchhhhhhhhccCceEEEEeeccccc
Confidence 4799999999999999999999999999997642 24789999999999999999999999999999999999876 44
Q ss_pred hHHHHcCCc-ccCHHHHhccCCEEEEcCCCCccccccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhCCCeeEEEe
Q 006864 265 DKARAVGVE-LVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAAL 343 (628)
Q Consensus 265 ~~a~~~g~~-~~sl~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~ga~l 343 (628)
......++. ..++++++++||+|++|+|+|++|++|||++.|++||+|++|||+|||++||++||+++|++|++.||+|
T Consensus 81 ~~~~~~~~~~~~~l~~~l~~sD~v~~~~plt~~T~~li~~~~l~~mk~ga~lIN~aRG~ivd~~aL~~aL~~g~i~ga~l 160 (188)
T d2naca1 81 SVEKELNLTWHATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTARGKLCDRDAVARALESGRLAGYAG 160 (188)
T ss_dssp HHHHHHTCEECSSHHHHGGGCSEEEECSCCCTTTTTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHTTSEEEEEE
T ss_pred cccccccccccCCHHHHHHhccchhhcccccccchhhhHHHHHHhCCCCCEEEecCchhhhhHHHHHHHHhCCCceeEEE
Confidence 444555554 4589999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCCCCCCCCCccccCCcEEEcCCCCC
Q 006864 344 DVFTEEPPAKDSKLVQHENVTVTPHLGA 371 (628)
Q Consensus 344 DV~~~EP~~~~~~L~~~~nvilTPHig~ 371 (628)
|||++||++.++||+.+||+++|||+||
T Consensus 161 DV~~~EP~~~~~~l~~~~nv~~TPHiaG 188 (188)
T d2naca1 161 DVWFPQPAPKDHPWRTMPYNGMTPHISG 188 (188)
T ss_dssp SCCSSSSCCTTCGGGTSTTBCCCCSCTT
T ss_pred eCCCCCCCCCCChHHcCCCeEEccccCc
Confidence 9999999999999999999999999996
|
| >d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-2-hydroxyisocaproate dehydrogenase species: Lactobacillus casei [TaxId: 1582]
Probab=100.00 E-value=8.8e-48 Score=377.47 Aligned_cols=184 Identities=30% Similarity=0.498 Sum_probs=168.7
Q ss_pred hhhHHHHHHHHHHHHHHchhHHHHHHHcCccccc-ccceeeecCCeEEEEecChhHHHHHHHHHcCCCEEEEECCCCChh
Q 006864 187 TVAAAEHGIALLASMARNVSQADASIKAGKWLRS-KYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPAD 265 (628)
Q Consensus 187 ~~avAE~~l~l~L~~~R~i~~~~~~~~~g~W~~~-~~~g~~l~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~ 265 (628)
..+||||++++||++.|++.++++.+++|.|.+. .+.|.+|.|||+||||+|+||+.+|++|++|||+|++|||+....
T Consensus 2 p~aVAE~~l~~iL~l~R~~~~~~~~~~~g~w~~~~~~~~~~l~~ktvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~ 81 (199)
T d1dxya1 2 PAAIAEFALTDTLYLLRNMGKVQAQLQAGDYEKAGTFIGKELGQQTVGVMGTGHIGQVAIKLFKGFGAKVIAYDPYPMKG 81 (199)
T ss_dssp HHHHHHHHHHHHHHHHTTHHHHHHHHHTTCHHHHTCCCCCCGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSS
T ss_pred ChHHHHHHHHHHHHHHhCHHHHHHHHHhCCCCcccCcccccccceeeeeeecccccccccccccccceeeeccCCccchh
Confidence 4689999999999999999999999999999864 457899999999999999999999999999999999999986432
Q ss_pred HHHHcCCcccCHHHHhccCCEEEEcCCCCccccccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhCCCeeEEEeec
Q 006864 266 KARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDV 345 (628)
Q Consensus 266 ~a~~~g~~~~sl~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~ga~lDV 345 (628)
....+...++++++++||+|++|+|+|++|++|||++.|++||+|++|||+|||++||++||+++|++|+|.||+|||
T Consensus 82 --~~~~~~~~~l~~l~~~~D~v~~~~plt~~T~~li~~~~l~~mk~~a~lIN~aRG~vvde~aL~~aL~~g~i~ga~lDV 159 (199)
T d1dxya1 82 --DHPDFDYVSLEDLFKQSDVIDLHVPGIEQNTHIINEAAFNLMKPGAIVINTARPNLIDTQAMLSNLKSGKLAGVGIDT 159 (199)
T ss_dssp --CCTTCEECCHHHHHHHCSEEEECCCCCGGGTTSBCHHHHHHSCTTEEEEECSCTTSBCHHHHHHHHHTTSEEEEEESS
T ss_pred --hhcchhHHHHHHHHHhcccceeeecccccccccccHHHhhccCCceEEEecccHhhhhhHHHHHHHhcCCcceEeccc
Confidence 123456679999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCC-------------CCCccccCCcEEEcCCCCCC
Q 006864 346 FTEEPPA-------------KDSKLVQHENVTVTPHLGAS 372 (628)
Q Consensus 346 ~~~EP~~-------------~~~~L~~~~nvilTPHig~~ 372 (628)
|+.||++ ..++|+.+|||++|||+||+
T Consensus 160 ~~~EP~~~~~~~~~~~~~~p~~~~L~~~~nviiTPHiagy 199 (199)
T d1dxya1 160 YEYETEDLLNLAKHGSFKDPLWDELLGMPNVVLSPHIAYY 199 (199)
T ss_dssp CTTHHHHHHHHHHHSSCCCHHHHHHHTCTTEEECSSCTTC
T ss_pred cCCCCcchhhccccccccChhhHHHhcCCCEEECCccccC
Confidence 9999962 23578899999999999986
|
| >d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=8.1e-47 Score=367.38 Aligned_cols=184 Identities=33% Similarity=0.474 Sum_probs=160.2
Q ss_pred ChhhHHHHHHHHHHHHHHchhHHHHHHHcCcccccccceeeecCCeEEEEecChhHHHHHHHHHcCCCEEEEECCCCChh
Q 006864 186 NTVAAAEHGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPAD 265 (628)
Q Consensus 186 ~~~avAE~~l~l~L~~~R~i~~~~~~~~~g~W~~~~~~g~~l~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~ 265 (628)
|+++||||+++++|++.|++++.+..+++|.|.+....+.++.|+++||||+|+||+.+|+++++|||+|++||++....
T Consensus 1 Na~aVAE~~l~~il~l~R~~~~~~~~~~~~~w~~~~~~~~~l~~~~vgiiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~ 80 (188)
T d1sc6a1 1 NTRSVAELVIGELLLLLRGVPEANAKAHRGVGNKLAAGSFEARGKKLGIIGYGHIGTQLGILAESLGMYVYFYDIENKLP 80 (188)
T ss_dssp THHHHHHHHHHHHHHHHHTHHHHHHHHHHTCCC-----CCCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCC
T ss_pred CCHHHHHHHHHHHHHHHhChHHHHHHHHhCCCcccccccccccceEEEEeecccchhhhhhhcccccceEeeccccccch
Confidence 78999999999999999999999999999999987777889999999999999999999999999999999999875432
Q ss_pred HHHHcCCcccCHHHHhccCCEEEEcCCCCccccccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhCCCeeEEEeec
Q 006864 266 KARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDV 345 (628)
Q Consensus 266 ~a~~~g~~~~sl~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~ga~lDV 345 (628)
.. ......++++++++||+|++|+|+|++|+++||++.|++||++++|||+|||++||++||+++|++|++.||++||
T Consensus 81 ~~--~~~~~~~l~ell~~sDii~i~~plt~~T~~li~~~~l~~mk~~a~lIN~aRG~lvde~aL~~aL~~~~~~~a~lDV 158 (188)
T d1sc6a1 81 LG--NATQVQHLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVVDIPALADALASKHLAGAAIDV 158 (188)
T ss_dssp CT--TCEECSCHHHHHHHCSEEEECCCSSTTTTTCBCHHHHHHSCTTEEEEECSCSSSBCHHHHHHHHHTTSEEEEEEEC
T ss_pred hh--hhhhhhhHHHHHhhccceeecccCCcchhhhccHHHHhhCCCCCEEEEcCcHHhhhhHHHHHHHHcCCceEEEEec
Confidence 11 2234458999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCC----CCCccccCCcEEEcCCCCC
Q 006864 346 FTEEPPA----KDSKLVQHENVTVTPHLGA 371 (628)
Q Consensus 346 ~~~EP~~----~~~~L~~~~nvilTPHig~ 371 (628)
|+.||.. .++||+++|||++|||+||
T Consensus 159 ~~~EP~~~~~~~~~~l~~~~nv~~TPHiaG 188 (188)
T d1sc6a1 159 FPTEPATNSDPFTSPLAEFDNVLLTPHIGG 188 (188)
T ss_dssp ---------CTTTGGGTTCTTEEEECCCSC
T ss_pred CCCCCCCcCCccchhHhcCCCEEEcCCcCc
Confidence 9999973 4568999999999999997
|
| >d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Putative formate dehydrogenase species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=100.00 E-value=1.3e-45 Score=356.69 Aligned_cols=180 Identities=27% Similarity=0.327 Sum_probs=164.4
Q ss_pred hhhHHHHHHHHHHHHHHchhHHHHHHHcCcccccccceeeecCCeEEEEecChhHHHHHHHHHcCCCEEEEECCCCChhH
Q 006864 187 TVAAAEHGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADK 266 (628)
Q Consensus 187 ~~avAE~~l~l~L~~~R~i~~~~~~~~~g~W~~~~~~g~~l~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~ 266 (628)
+++||||+++|||+++|++.++++.+++|+|.+.. ...++.|||+||||+|+||+.+|+++++|||+|++|||+.....
T Consensus 1 A~aVAE~~~~liL~~~R~i~~~~~~~~~~~w~~~~-~~~~l~gk~vgIiG~G~IG~~va~~l~~~g~~v~~~d~~~~~~~ 79 (181)
T d1qp8a1 1 ADAVAEFALALLLAPYKRIIQYGEKMKRGDYGRDV-EIPLIQGEKVAVLGLGEIGTRVGKILAALGAQVRGFSRTPKEGP 79 (181)
T ss_dssp HHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCS-CCCCCTTCEEEEESCSTHHHHHHHHHHHTTCEEEEECSSCCCSS
T ss_pred CchHHHHHHHHHHHHHhCHHHHHHHHHcCCCCCCC-CCCcccCceEEEeccccccccceeeeeccccccccccccccccc
Confidence 57899999999999999999999999999998753 33479999999999999999999999999999999999864221
Q ss_pred HHHcCCcccCHHHHhccCCEEEEcCCCCccccccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhCCCeeEEEeecc
Q 006864 267 ARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVF 346 (628)
Q Consensus 267 a~~~g~~~~sl~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~ga~lDV~ 346 (628)
.....++++++++||+|++|+|+|++|+++||++.|++||+|++|||+|||++||++||+++|++|++.||++|||
T Consensus 80 ----~~~~~~l~ell~~sDiv~~~~pl~~~t~~li~~~~l~~mk~~ailIN~~RG~ivd~~aL~~aL~~~~i~~aalDV~ 155 (181)
T d1qp8a1 80 ----WRFTNSLEEALREARAAVCALPLNKHTRGLVKYQHLALMAEDAVFVNVGRAEVLDRDGVLRILKERPQFIFASDVW 155 (181)
T ss_dssp ----SCCBSCSHHHHTTCSEEEECCCCSTTTTTCBCHHHHTTSCTTCEEEECSCGGGBCHHHHHHHHHHCTTCEEEESCC
T ss_pred ----eeeeechhhhhhccchhhcccccccccccccccceeeeccccceEEeccccccccchhhhhhcccCcEEEEEEecC
Confidence 1123489999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCC-CCCCCCccccCCcEEEcCCCCC
Q 006864 347 TEE-PPAKDSKLVQHENVTVTPHLGA 371 (628)
Q Consensus 347 ~~E-P~~~~~~L~~~~nvilTPHig~ 371 (628)
+.| |++.++||+.+|||++|||+||
T Consensus 156 ~~e~p~~~~~~l~~~~nvi~TPHiaG 181 (181)
T d1qp8a1 156 WGRNDFAKDAEFFSLPNVVATPWVAG 181 (181)
T ss_dssp TTTTCCGGGHHHHTSTTEEECCSCSS
T ss_pred CCCCCCCCCChHHcCCCEEeccccCc
Confidence 765 5567889999999999999996
|
| >d1ygya2 c.23.12.1 (A:3-98,A:283-316) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Formate/glycerate dehydrogenase catalytic domain-like family: Formate/glycerate dehydrogenases, substrate-binding domain domain: Phosphoglycerate dehydrogenase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.95 E-value=1.5e-28 Score=224.31 Aligned_cols=129 Identities=35% Similarity=0.457 Sum_probs=122.7
Q ss_pred CCCeEEEeCCCCHhHHHHhhcCCcEEEecCCCHhHHHhhcCCCeEEEEcCCCCCCHHHHHhcCCcceeEEecccccCccc
Q 006864 89 PKPTILVSEKLGEAGLAILRSFGNVECLYDLSPEALCEKISQCDALIVRSGTKVTRSVFEAANGKLKVVGRAGVGIDNVD 168 (628)
Q Consensus 89 ~~~~vlv~~~l~~~~~~~l~~~~~v~~~~~~~~~el~~~~~~~d~liv~~~~~v~~~~l~~~~~~Lk~I~~~g~G~D~iD 168 (628)
+|||||+++++++++++.|++.+++.+....+++|+.+.++++|++++++.+++++++++++ |+||+|+++|+||||||
T Consensus 1 sMpkvli~~~~~~~~~~~L~~~~~v~~~~~~~~~el~~~~~~~d~ii~~~~~~i~~~~l~~~-p~Lk~I~~~g~G~d~ID 79 (130)
T d1ygya2 1 SLPVVLIADKLAPSTVAALGDQVEVRWVDGPDRDKLLAAVPEADALLVRSATTVDAEVLAAA-PKLKIVARAGVGLDNVD 79 (130)
T ss_dssp CCCEEEECSSCCGGGGTTSCSSSEEEECCTTSHHHHHHHGGGCSEEEECSSSCBCHHHHHTC-TTCCEEEESSSCCTTBC
T ss_pred CCCEEEEECCCCHHHHHHHhCCcEEEECCCCCHHHHHHHcCCCEEEEEcCcccchHHHHhhc-ccceEEeeecccccchh
Confidence 48999999999999999999989998888889999999999999999998889999999998 59999999999999999
Q ss_pred HhHHHhcCceEEcCCCCChhhHHHHHHHHHHHHHHchhHHHHHHHcCccc
Q 006864 169 LQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWL 218 (628)
Q Consensus 169 l~aa~~~GI~V~n~p~~~~~avAE~~l~l~L~~~R~i~~~~~~~~~g~W~ 218 (628)
+++|+++||.|+|+|++++.+||||+++|||+++|++..+++.+|+|+|.
T Consensus 80 l~~~~~~gI~V~n~p~~~~~~VAE~~~~l~L~l~R~i~~a~~~vr~g~~~ 129 (130)
T d1ygya2 80 VDAATARGVLVVNAPTSASTAEAQDRAGTDVAESVRLALAGEFVPDAVNV 129 (130)
T ss_dssp HHHHHHTTCEEECCTTSSCBHHHHHHHHHHHHHHHHHHHTTCCCTTBCSC
T ss_pred HHHHHHCCceEEecCCCCcHHHHHHHHHHHHHHHhhHHHHhhhcccCccC
Confidence 99999999999999999999999999999999999999998888888884
|
| >d1ygya4 d.81.2.2 (A:317-451) D-3-phosphoglycerate dehydrogenase SerA {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: FwdE/GAPDH domain-like superfamily: Serine metabolism enzymes domain family: SerA intervening domain-like domain: D-3-phosphoglycerate dehydrogenase SerA species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.94 E-value=4.8e-27 Score=215.54 Aligned_cols=131 Identities=18% Similarity=0.235 Sum_probs=119.5
Q ss_pred ccccccccHHHHHHHHhHHHHHHhcCCCCceEEEEEEeecCCCCCCCcccchHHHHHhhccccccCcccccchHhHHhhc
Q 006864 409 EVLSELAPYVVLAKKLGRLAVQLVSGGSGIKSVKLIYRSARDPDDLDTRILRAMITKGIIEPISASFINLVNADFTAKQK 488 (628)
Q Consensus 409 ~~~~~~~p~~~lAerlG~la~qL~~g~~~~~~v~i~~~Gs~a~~~~~~~~~~~a~l~GlL~~~~~~~vnlvNA~~iAke~ 488 (628)
+..++++||+.||||||+|+.||+++ .+++++|+|+|+++ .+++.++..++++|+|.++.+++||++||+.+|||+
T Consensus 3 ~~~~~l~Pyl~LaekLG~~~~ql~~~--~~~~i~I~~~G~~a--~~~~~~lt~a~l~G~L~~~~~~~VN~VNA~~iAker 78 (135)
T d1ygya4 3 VVNEEVAPWLDLVRKLGVLAGVLSDE--LPVSLSVQVRGELA--AEEVEVLRLSALRGLFSAVIEDAVTFVNAPALAAER 78 (135)
T ss_dssp TSCTTTTTHHHHHHHHHHHHHHTSSS--CCSEEEEEEEEGGG--GSCCHHHHHHHHHHHTGGGSCTTCCCCCHHHHHHHH
T ss_pred ccccchhhHHHHHHHHHHHHHHHcCC--CCcEEEEEEEeecc--cccccHHHHHHHHHHHhcccccccchhhHHHHHHHc
Confidence 45788999999999999999999998 89999999999997 788899999999999999999999999999999999
Q ss_pred CceEEEEEeecCCCCCCCCceEEEEEEecccccceeeCCCcEEEEEEEEEC-C-eeEEEEECceeEEee
Q 006864 489 GLRISEERVVADSSPEFPIDSIQVQLSNVDSKFAAAVSENGEISIEGKVKF-G-IPHLTRVGSFGVDAS 555 (628)
Q Consensus 489 GI~i~~~~~~~~~~~~~~~ntv~v~l~~~~~~~~~~~~~~~~~~v~Gt~~g-G-~~~I~~Idgf~Vd~~ 555 (628)
||++++.+.+... .|+|++++++. ..+++.++|.||++| + .+||++||||+||+.
T Consensus 79 GI~v~~~~~~~~~---~~~n~i~v~~~---------~~~~~~~~v~Gtv~g~~~~~RIv~Idg~~vdvk 135 (135)
T d1ygya4 79 GVTAEICKASESP---NHRSVVDVRAV---------GADGSVVTVSGTLYGPQLSQKIVQINGRHFDLR 135 (135)
T ss_dssp SCEEEEEEESCCS---SSSEEEEEEEE---------CTTSCEEEEEEEEETTTTEEEEEEETTEEEEEE
T ss_pred CCEEEEEECCCCC---CCcccEEEEEE---------eCCCcEEEEEEEEECCCCcEEEEEECCEEEeeC
Confidence 9999998876443 79999999876 467788999999997 4 589999999999984
|
| >d1sc6a2 c.23.12.1 (A:7-107,A:296-326) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Formate/glycerate dehydrogenase catalytic domain-like family: Formate/glycerate dehydrogenases, substrate-binding domain domain: Phosphoglycerate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=99.90 E-value=8.1e-24 Score=193.15 Aligned_cols=127 Identities=31% Similarity=0.343 Sum_probs=107.8
Q ss_pred CCCCeEEEeCCCCHhHHHHhhcCCc--EEEe-cCCCHhHHHhhcCCCeEEEEcCCCCCCHHHHHhcCCcceeEEeccccc
Q 006864 88 TPKPTILVSEKLGEAGLAILRSFGN--VECL-YDLSPEALCEKISQCDALIVRSGTKVTRSVFEAANGKLKVVGRAGVGI 164 (628)
Q Consensus 88 ~~~~~vlv~~~l~~~~~~~l~~~~~--v~~~-~~~~~~el~~~~~~~d~liv~~~~~v~~~~l~~~~~~Lk~I~~~g~G~ 164 (628)
..|+|||+++.+++++++.|++.+. +.+. ..++++++.+.++++|++++++.+++++++|+++ |+||+|+++|+||
T Consensus 2 k~kmKILv~d~i~~~a~~~L~~~g~~~v~~~~~~~~~~~l~~~~~~~d~ii~~~~~~i~~~~i~~~-p~Lk~I~~~gvG~ 80 (132)
T d1sc6a2 2 KDKIKFLLVEGVHQKALESLRAAGYTNIEFHKGALDDEQLKESIRDAHFIGLRSRTHLTEDVINAA-EKLVAIGAFAIGT 80 (132)
T ss_dssp CSSCCEEECSCCCHHHHHHHHHTTCCCEEECSSCCCHHHHHHHTTSCSEEEECSSCCBCHHHHHHC-SSCCEEEECSSCC
T ss_pred CCCCEEEEECCCCHHHHHHHHhCCCEEEEeCCCCCCHHHHHHhhcCCcEEEEecccccChhhhhcc-ccceeEEEecccc
Confidence 5689999999999999999998763 3333 3468999999999999999998889999999998 5999999999999
Q ss_pred CcccHhHHHhcCceEEcCCCCChhhHHHHHHHHHHHHHHchhHHHHHHHcCcc
Q 006864 165 DNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKW 217 (628)
Q Consensus 165 D~iDl~aa~~~GI~V~n~p~~~~~avAE~~l~l~L~~~R~i~~~~~~~~~g~W 217 (628)
||||+++|+++||.|+|+|++++.+||||+++||+ .|++..++...+-+.|
T Consensus 81 D~IDl~aa~~~gI~V~ntp~~~~~svAe~~~lml~--~~~~~~~d~~~~~~~~ 131 (132)
T d1sc6a2 81 NQVDLDAAAKRGIPVFNAPFSSTQEAQENIGLEVA--GKLIKYSDNGSTLSAV 131 (132)
T ss_dssp TTBCHHHHHHTTCCEECCTTTCSHHHHHHHHHHHH--HHHHHHHHHCCCTTBS
T ss_pred cccCHHHHHhCCCEEEECCCCchhHHHHHHHHHHH--HHhhHHHhCcCccccc
Confidence 99999999999999999999999999998665553 5666666665444433
|
| >d1gdha2 c.23.12.1 (A:2-100,A:292-321) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Formate/glycerate dehydrogenase catalytic domain-like family: Formate/glycerate dehydrogenases, substrate-binding domain domain: D-glycerate dehydrogenase species: Hyphomicrobium methylovorum [TaxId: 84]
Probab=99.89 E-value=3.5e-23 Score=188.18 Aligned_cols=114 Identities=25% Similarity=0.297 Sum_probs=102.6
Q ss_pred CCeEEEeCCCCHhHHHHhhcCCcEEEec---CCCHhHHHhhcCCCeEEEEcCCCCCCHHHHHhcCCcceeEEecccccCc
Q 006864 90 KPTILVSEKLGEAGLAILRSFGNVECLY---DLSPEALCEKISQCDALIVRSGTKVTRSVFEAANGKLKVVGRAGVGIDN 166 (628)
Q Consensus 90 ~~~vlv~~~l~~~~~~~l~~~~~v~~~~---~~~~~el~~~~~~~d~liv~~~~~v~~~~l~~~~~~Lk~I~~~g~G~D~ 166 (628)
|||||++.+++++.+++|++.+++.+.+ .++.+|+.+.++++|+|++++.++++++++++++++||+|+++|+||||
T Consensus 1 K~kVlit~~~~~~~~~~l~~~~~v~~~~~~~~~s~~el~~~~~~~d~ii~~~~~~i~~~~l~~~~~~LK~I~~~gvG~d~ 80 (129)
T d1gdha2 1 KKKILITWPLPEAAMARARESYDVIAHGDDPKITIDEMIETAKSVDALLITLNEKCRKEVIDRIPENIKCISTYSIGFDH 80 (129)
T ss_dssp CCEEEESSCCCHHHHHHHHTTSEEEECCSTTCCCHHHHHHHHTTCSEEEEETTSCBCHHHHHHSCTTCCEEEEESSCCTT
T ss_pred CCEEEEeCCCCHHHHHHHHcCCcEEEeCCCCCCCHHHHHHHhcCCCEEEEcCCchhhhHHHhhhhhcceeeeecccCCcc
Confidence 7999999999999999999988888754 3588999999999999999988899999999986589999999999999
Q ss_pred ccHhHHHhcCceEEcCCCCChhhHHHHHHHHHHHHHH
Q 006864 167 VDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMAR 203 (628)
Q Consensus 167 iDl~aa~~~GI~V~n~p~~~~~avAE~~l~l~L~~~R 203 (628)
||+++|+++||+|+|+||+++.+|||+++++|+.+.+
T Consensus 81 ID~~~a~~~gI~V~ntpg~~~~aVAE~A~~~~~l~~~ 117 (129)
T d1gdha2 81 IDLDACKARGIKVGNAPHGATQAREDMAHQANDLIDA 117 (129)
T ss_dssp BCHHHHHHTTCEEECCCCSBHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHhCCCEEEECCCCCchHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999976655544443
|
| >d1qp8a2 c.23.12.1 (A:1-82,A:264-302) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Formate/glycerate dehydrogenase catalytic domain-like family: Formate/glycerate dehydrogenases, substrate-binding domain domain: Putative formate dehydrogenase species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=99.85 E-value=3.7e-23 Score=185.95 Aligned_cols=121 Identities=17% Similarity=0.193 Sum_probs=106.8
Q ss_pred CeEEEeCCCCHhHHHHhhcCCcEEEecCCCHhHHHhhcCCCeEEEEcCCCCCCHHHHHhcCCcceeEEecccccCcccHh
Q 006864 91 PTILVSEKLGEAGLAILRSFGNVECLYDLSPEALCEKISQCDALIVRSGTKVTRSVFEAANGKLKVVGRAGVGIDNVDLQ 170 (628)
Q Consensus 91 ~~vlv~~~l~~~~~~~l~~~~~v~~~~~~~~~el~~~~~~~d~liv~~~~~v~~~~l~~~~~~Lk~I~~~g~G~D~iDl~ 170 (628)
+||+++.+++++..+.|++..++.... .+.++|++++ +++++++++++ |+||||++.|+|+||+|++
T Consensus 1 Mki~v~~~lp~e~~e~L~~~~~v~~~~---------d~~~~d~~l~---~~~~~~~l~~~-~~Lk~i~~~~aG~D~i~~~ 67 (121)
T d1qp8a2 1 MELYVNFELPPEAEEELRKYFKIVRGG---------DLGNVEAALV---SRITAEELAKM-PRLKFIQVVTAGLDHLPWE 67 (121)
T ss_dssp CEEECCSCCCHHHHHHHHTTCEEECSS---------CCTTBCCCCB---SCCCHHHHHHC-TTCCCEEBSSSCCTTSCCT
T ss_pred CEEEEeCCCCHHHHHHhhhcceEeecc---------cccccceeee---eccCHHHHhcC-CCceEEEecccCcCCCCHH
Confidence 589999999999999999876654322 2567888876 47999999998 5999999999999999999
Q ss_pred HHHhcCceEEcCCCCChhhHHHHHHHHHHHHHHchhHHHHHHHcCcccccccceeeecCCeEEEEecChhHHHHHHHHHc
Q 006864 171 AATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKG 250 (628)
Q Consensus 171 aa~~~GI~V~n~p~~~~~avAE~~l~l~L~~~R~i~~~~~~~~~g~W~~~~~~g~~l~GktiGIIGlG~IG~~vA~~l~~ 250 (628)
++. +||.|+|+||+|+.++|||++++||++.|+ ++|+|+|.||+++|+|+++
T Consensus 68 ~~~-~~i~v~n~~g~~~~~vae~~~~~il~~~r~---------------------------l~i~G~G~iG~~iA~r~~a 119 (121)
T d1qp8a2 68 SIP-PHVTVAGNAGSNGYGNERVWRQMVMEAVRN---------------------------LITYATGGRPRNIAKREDY 119 (121)
T ss_dssp TSC-TTSCEECCCSSSSSSCHHHHHHHHHHHHHH---------------------------HHHHHTTSCCSCBCCGGGT
T ss_pred Hhc-cCeEEEECCCCChHHHHHHHHHHHHHhcCC---------------------------EEEEcCCHHHHHHHHHHHh
Confidence 985 699999999999999999999999999984 5799999999999999999
Q ss_pred CC
Q 006864 251 LG 252 (628)
Q Consensus 251 ~G 252 (628)
||
T Consensus 120 ~G 121 (121)
T d1qp8a2 120 IG 121 (121)
T ss_dssp C-
T ss_pred cC
Confidence 97
|
| >d1dxya2 c.23.12.1 (A:1-100,A:300-330) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Formate/glycerate dehydrogenase catalytic domain-like family: Formate/glycerate dehydrogenases, substrate-binding domain domain: D-2-hydroxyisocaproate dehydrogenase species: Lactobacillus casei [TaxId: 1582]
Probab=99.84 E-value=1.9e-21 Score=176.97 Aligned_cols=123 Identities=18% Similarity=0.176 Sum_probs=101.7
Q ss_pred CeEEEeCCC--CHhHHHHhhc-C-CcEEEecCCCHhHHHhhcCCCeEEEEcCCCCCCHHHHHhcC-CcceeEEecccccC
Q 006864 91 PTILVSEKL--GEAGLAILRS-F-GNVECLYDLSPEALCEKISQCDALIVRSGTKVTRSVFEAAN-GKLKVVGRAGVGID 165 (628)
Q Consensus 91 ~~vlv~~~l--~~~~~~~l~~-~-~~v~~~~~~~~~el~~~~~~~d~liv~~~~~v~~~~l~~~~-~~Lk~I~~~g~G~D 165 (628)
+||++.+.. ..+.++.+.+ + .++.+......+++.+.++++|+|++++.+++++++|++++ ++||+|+++|+|||
T Consensus 1 MKIl~~~~~~~e~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~ii~~~~~~~~~~vl~~l~~~~Lk~I~~~~vG~d 80 (131)
T d1dxya2 1 MKIIAYGARVDEIQYFKQWAKDTGNTLEYHTEFLDENTVEWAKGFDGINSLQTTPYAAGVFEKMHAYGIKFLTIRNVGTD 80 (131)
T ss_dssp CEEEECSCCTTTHHHHHHHHHHHCCEEEECSSCCCTTGGGGGTTCSEEEECCSSCBCHHHHHHHHHTTCCEEEESSSCCT
T ss_pred CEEEEEecCcCcHHHHHHHHHHcCeEEEEcCCCCCHHHHHHhcCCCEEEEecCCCCCHHHHhhcccCCeEEEEEcccccc
Confidence 478886533 3444555443 3 36666666566788889999999999988899999999753 37999999999999
Q ss_pred cccHhHHHhcCceEEcCCCCChhhHHHHHHHHHHHHHHchhHHHHHHH
Q 006864 166 NVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIK 213 (628)
Q Consensus 166 ~iDl~aa~~~GI~V~n~p~~~~~avAE~~l~l~L~~~R~i~~~~~~~~ 213 (628)
|||+++|+++||.|+|+|++++.+||||++++||++.|++.+++++++
T Consensus 81 ~ID~~~a~~~gI~V~n~P~~~~~aVAE~~~~~~l~l~R~l~~~~~~~e 128 (131)
T d1dxya2 81 NIDMTAMKQYGIRLSNVPAYTETAVHNMVYFSLQHLVDFLTKGETSTE 128 (131)
T ss_dssp TBCHHHHHHTTCEEECCTTSSHHHHHHHHHHHHHHHHHHHHHSCCTTE
T ss_pred cccccccccceEEEEeCCCCCchhHHHHHHHHHHHHHcchHHHHhhcc
Confidence 999999999999999999999999999999999999999987665543
|
| >d1mx3a2 c.23.12.1 (A:27-125,A:319-352) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Formate/glycerate dehydrogenase catalytic domain-like family: Formate/glycerate dehydrogenases, substrate-binding domain domain: Transcription corepressor CtbP species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]
Probab=99.83 E-value=5.5e-21 Score=174.18 Aligned_cols=124 Identities=23% Similarity=0.370 Sum_probs=106.2
Q ss_pred CCeEEEeCCCC-HhHHHHhhcCCcEEEecCCCHhHHHhh-cCCCeEEEEcCCCCCCHHHHHhcCCcceeEEecccccCcc
Q 006864 90 KPTILVSEKLG-EAGLAILRSFGNVECLYDLSPEALCEK-ISQCDALIVRSGTKVTRSVFEAANGKLKVVGRAGVGIDNV 167 (628)
Q Consensus 90 ~~~vlv~~~l~-~~~~~~l~~~~~v~~~~~~~~~el~~~-~~~~d~liv~~~~~v~~~~l~~~~~~Lk~I~~~g~G~D~i 167 (628)
||+|++.|..+ ...+..|++.+++.+....+.+|+.+. +.++|++++++.+++++++|+++ |+||+|+++|+|+|||
T Consensus 1 mP~v~~ld~~d~~~e~~~L~~~~~v~~~~~~s~~e~~e~~~~~a~~vlv~~~~~i~~~~l~~~-~~Lk~I~~~g~G~d~i 79 (133)
T d1mx3a2 1 MPLVALLDGRDCTVEMPILKDVATVAFCDAQSTQEIHEKVLNEAVGALMYHTITLTREDLEKF-KALRIIVRIGSGFDNI 79 (133)
T ss_dssp CCEEEESSCSCCTTTHHHHTTTCEEEECCCSSGGGSCHHHHHHEEEEEECSSSCBCHHHHTTC-SSCCEEEESSSCCTTB
T ss_pred CCEEEEecCCcchhhHHHhcccceEEEecCCChHHHHHHHhccCcEEEEEeCCCcCHHHHhhC-CCCeEEEEcCCCcccE
Confidence 68899888654 344778888888887766677776654 56789999998899999999998 5999999999999999
Q ss_pred cHhHHHhcCceEEcCCCCChhhHHHHHHHHHHHHHHchhHHHHHHHcCcccc
Q 006864 168 DLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLR 219 (628)
Q Consensus 168 Dl~aa~~~GI~V~n~p~~~~~avAE~~l~l~L~~~R~i~~~~~~~~~g~W~~ 219 (628)
|+++|+++||.|+|+|++++ ++|||+++|||+++|+++++.+ |+|.+
T Consensus 80 D~~~~~~~gI~v~n~p~~~~-~vAE~a~~lil~~~R~i~~a~~----g~~~~ 126 (133)
T d1mx3a2 80 DIKSAGDLGIAVCNVPAASV-YSEQASIEMREEAAREIRRAIT----GRIPD 126 (133)
T ss_dssp CHHHHHHTTCEEECCCSTTH-CCHHHHHHHHHHHHHHHHHHHH----SCTTT
T ss_pred eeeeheeCCEEEEcCCCCCc-hhHHHHHHHHHHHHhhHHHHHh----ccccc
Confidence 99999999999999999998 5799999999999999998865 66654
|
| >d2naca2 c.23.12.1 (A:1-147,A:336-374) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Formate/glycerate dehydrogenase catalytic domain-like family: Formate/glycerate dehydrogenases, substrate-binding domain domain: Formate dehydrogenase species: Pseudomonas sp., strain 101 [TaxId: 306]
Probab=99.80 E-value=2.7e-20 Score=176.44 Aligned_cols=114 Identities=21% Similarity=0.223 Sum_probs=100.7
Q ss_pred HHHHhhcCC-cEEEecC--CCHhHHHhhcCCCeEEEEcC--CCCCCHHHHHhcCCcceeEEecccccCcccHhHHHhcCc
Q 006864 103 GLAILRSFG-NVECLYD--LSPEALCEKISQCDALIVRS--GTKVTRSVFEAANGKLKVVGRAGVGIDNVDLQAATEFGC 177 (628)
Q Consensus 103 ~~~~l~~~~-~v~~~~~--~~~~el~~~~~~~d~liv~~--~~~v~~~~l~~~~~~Lk~I~~~g~G~D~iDl~aa~~~GI 177 (628)
..++|++.+ ++....+ .+.+++.+.+.++|++|++. ..++++|+|+++ ||||+|+++|+|+||||+++|++|||
T Consensus 59 lr~~Le~~GhelV~~sd~~~~~~el~k~l~DADivI~~pf~~~~lt~e~i~~a-p~LKlI~~~g~G~D~VDl~aa~e~gI 137 (186)
T d2naca2 59 LRKYLESNGHTLVVTSDKDGPDSVFERELVDADVVISQPFWPAYLTPERIAKA-KNLKLALTAGIGSDHVDLQSAIDRNV 137 (186)
T ss_dssp CHHHHHHTTCEEEEESCCSSTTSHHHHHHTTCSEEEEBTTBCCCBCHHHHHHC-TTCCEEEESSSCCTTBCHHHHHHTTC
T ss_pred HHHHHHHCCCEEEEecCCCCChHHHHhhcccCCEEEEecccccccCHHHHhcC-ccceEEEEeccCCccccHHHHHhCCC
Confidence 357788876 5555443 35668889999999999984 568999999998 59999999999999999999999999
Q ss_pred eEEcCCCCChhhHHHHH--------HHHHHHHHHchhHHHHHHHcCcc
Q 006864 178 LVVNAPIANTVAAAEHG--------IALLASMARNVSQADASIKAGKW 217 (628)
Q Consensus 178 ~V~n~p~~~~~avAE~~--------l~l~L~~~R~i~~~~~~~~~g~W 217 (628)
.|+|+||+|+.+||||+ +.+++...|++...+..+++|+|
T Consensus 138 ~V~n~pg~n~~SVAEha~~~~~~~~i~~il~~~r~~~~~~~~v~~G~~ 185 (186)
T d2naca2 138 TVAEVTYCNSTTLTAQARYAAGTREILECFFEGRPIRDEYLIVQGGAL 185 (186)
T ss_dssp EEEECTTTTHCSHHHHHHHHHHHHHHHHHHHHTCCCCGGGEEEETTEE
T ss_pred EEEECCCcCcHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhhcccc
Confidence 99999999999999999 77888899999999999999998
|
| >d1j4aa2 c.23.12.1 (A:2-103,A:301-332) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Formate/glycerate dehydrogenase catalytic domain-like family: Formate/glycerate dehydrogenases, substrate-binding domain domain: D-lactate dehydrogenase species: Lactobacillus helveticus [TaxId: 1587]
Probab=99.75 E-value=1.3e-18 Score=158.80 Aligned_cols=116 Identities=17% Similarity=0.197 Sum_probs=90.7
Q ss_pred eEEEeCCCC--HhHHHH-hhcCCcE--EEecCCCHhHHHhhcCCCeEEEEcCCCCCCHHHHHhcC-CcceeEEecccccC
Q 006864 92 TILVSEKLG--EAGLAI-LRSFGNV--ECLYDLSPEALCEKISQCDALIVRSGTKVTRSVFEAAN-GKLKVVGRAGVGID 165 (628)
Q Consensus 92 ~vlv~~~l~--~~~~~~-l~~~~~v--~~~~~~~~~el~~~~~~~d~liv~~~~~v~~~~l~~~~-~~Lk~I~~~g~G~D 165 (628)
||++-.... ...++. +++..++ ........+++.+.++++|+++++..++++++++++++ ++||+|+++|+|||
T Consensus 2 KI~~f~~~~~e~~~~e~~~~~~~~v~v~~~~~~~~~e~~~~~~~~d~viv~~~~~i~~eil~~l~~~~LK~I~~~~vG~d 81 (134)
T d1j4aa2 2 KIFAYAIREDEKPFLKEWEDAHKDVEVEYTDKLLTPETVALAKGADGVVVYQQLDYIAETLQALADNGITKMSLRNVGVD 81 (134)
T ss_dssp EEEECSCCGGGHHHHHHHHHTCTTSEEEECSSCCCTTTGGGGTTCSEEEECCSSCBCHHHHHHHHHTTCCEEEESSSCCT
T ss_pred eEEEEecccccHHHHHHHHHhCCCEEEEECCCCCCHHHHHHhcCCCEEEEecCCCcCHHHHhhhcccCeeEEEEccCCcC
Confidence 677754332 233433 3444444 44444445778899999999999888899999998652 37999999999999
Q ss_pred cccHhHHHhcCceEEcCCCCChhhHHHHHHHHHHHHHHchhHHHH
Q 006864 166 NVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADA 210 (628)
Q Consensus 166 ~iDl~aa~~~GI~V~n~p~~~~~avAE~~l~l~L~~~R~i~~~~~ 210 (628)
|||+++|+++||.|+|+|++ ++|||++++||+++|++.....
T Consensus 82 ~ID~~aa~~~gI~V~N~P~~---svae~a~~~ml~l~r~~~~~~~ 123 (134)
T d1j4aa2 82 NIDMAKAKELGFQITNVPVY---SYTTHAVRNMVVKAFDNNLELV 123 (134)
T ss_dssp TBCHHHHHHTTCEEECCCCS---CCBHHHHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHhCCeEEEECCCC---cHHHHHHHHHHHHHHHHhHHHh
Confidence 99999999999999999987 5799999999999998755433
|
| >d1ygya3 d.58.18.1 (A:452-529) Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: ACT-like family: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain domain: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.62 E-value=2.3e-16 Score=130.31 Aligned_cols=72 Identities=21% Similarity=0.382 Sum_probs=69.7
Q ss_pred CCcEEEEeccCCCCchhhHHhhhhcCCccccceEEeeeecCccEEEEEEeCCCCCHHHHHHHhcccCccccC
Q 006864 557 EGNLILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDEEPNQDSLKEIGKVHFVARIL 628 (628)
Q Consensus 557 ~~~~Llv~~~D~PGvIa~V~~iL~~~~INIa~m~v~R~~~gg~Al~~i~vD~~~~~~~l~~L~~l~~v~~v~ 628 (628)
++|.|++.|.|+||+|++|+++|+++||||++|+++|..+||.|+|++++|++++++++++|+++++|.+++
T Consensus 2 eG~~L~i~~~D~PGvi~~I~~~l~~~~iNI~~m~~~~~~~g~~a~~vi~vD~~~~~~vl~~I~~~~~V~~v~ 73 (78)
T d1ygya3 2 QGINLIIHYVDRPGALGKIGTLLGTAGVNIQAAQLSEDAEGPGATILLRLDQDVPDDVRTAIAAAVDAYKLE 73 (78)
T ss_dssp CSEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEECSSSSCEEEEEEESSCCCHHHHHHHHHHHTEEEEE
T ss_pred CceEEEEEeCCcCCHHHHHHHHHHhcCcChhhheeeecCCCCeEEEEEEcCCCccHHHHHHHHcCCCeEEEE
Confidence 689999999999999999999999999999999999999999999999999999999999999999998864
|
| >d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.61 E-value=5.7e-16 Score=144.61 Aligned_cols=121 Identities=24% Similarity=0.324 Sum_probs=100.0
Q ss_pred ceeeecCCeEEEEecChhHHHHHHHHHcCCCEEEEECCCC-ChhHHHHcCCcccCHHHHhccCCEEEEcCCCCccccccc
Q 006864 223 VGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA-PADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIF 301 (628)
Q Consensus 223 ~g~~l~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~g~~~~sl~ell~~aDvV~l~~Plt~~t~~li 301 (628)
.+..|.||+++|+|||.||+.+|+++++|||+|++||+++ ...++...|++..++++++..+|++++++ .++++|
T Consensus 18 t~~~l~Gk~v~V~GyG~iG~g~A~~~rg~G~~V~v~e~dp~~al~A~~dG~~v~~~~~a~~~adivvtaT----Gn~~vI 93 (163)
T d1li4a1 18 TDVMIAGKVAVVAGYGDVGKGCAQALRGFGARVIITEIDPINALQAAMEGYEVTTMDEACQEGNIFVTTT----GCIDII 93 (163)
T ss_dssp HCCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECCHHHHTTTCSEEEECS----SCSCSB
T ss_pred hCceecCCEEEEeccccccHHHHHHHHhCCCeeEeeecccchhHHhhcCceEeeehhhhhhhccEEEecC----CCccch
Confidence 4678999999999999999999999999999999999886 33345566888889999999999998865 478999
Q ss_pred cHHHHhcCCCCcEEEEcC-CCchhcHHHHHHHHhCCCeeEEEeeccC
Q 006864 302 NDETFAKMKKGVRIVNVA-RGGVIDEEALVRALDSGVVAQAALDVFT 347 (628)
Q Consensus 302 ~~~~l~~mk~gailIN~a-Rg~~vde~aL~~aL~~g~i~ga~lDV~~ 347 (628)
+.+.|++||+|++|.|++ +..-+|.++|.+...+.+...-.+|.|.
T Consensus 94 ~~eh~~~MKdgaIL~N~Ghfd~EId~~~L~~~~~~~~~v~~~v~~y~ 140 (163)
T d1li4a1 94 LGRHFEQMKDDAIVCNIGHFDVEIDVKWLNENAVEKVNIKPQVDRYR 140 (163)
T ss_dssp CHHHHTTCCTTEEEEECSSSTTSBCHHHHHHHCSEEEEEETTEEEEE
T ss_pred hHHHHHhccCCeEEEEeccccceecHHHHhhccceeeeecCCeeEEE
Confidence 999999999999999986 6777899998775444333344445443
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=99.43 E-value=3.3e-13 Score=125.57 Aligned_cols=140 Identities=17% Similarity=0.176 Sum_probs=101.4
Q ss_pred CeEEEEecChhHHHHHHHHHcCCCEEEEECCCC-ChhHHHHcCCc--ccCHHHHhccCCEEEEcCCCCccccccccHHHH
Q 006864 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA-PADKARAVGVE--LVSFDQALATADFISLHMPLNPTTSKIFNDETF 306 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~g~~--~~sl~ell~~aDvV~l~~Plt~~t~~li~~~~l 306 (628)
++|||||+|+||+.+|+.|+..|.+|.+||++. ..+.+.+.+.. ..+..+.+++||+|++++|.. .+..++ ++..
T Consensus 1 MkI~iIG~G~mG~~lA~~l~~~g~~V~~~d~~~~~~~~a~~~~~~~~~~~~~~~~~~~DiIilavp~~-~~~~vl-~~l~ 78 (165)
T d2f1ka2 1 MKIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTCEKAVERQLVDEAGQDLSLLQTAKIIFLCTPIQ-LILPTL-EKLI 78 (165)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTSCSEEESCGGGGTTCSEEEECSCHH-HHHHHH-HHHG
T ss_pred CEEEEEeecHHHHHHHHHHHHCCCEEEEEECCchHHHHHHHhhccceeeeecccccccccccccCcHh-hhhhhh-hhhh
Confidence 479999999999999999999999999999975 33455666642 335557889999999999943 466666 4567
Q ss_pred hcCCCCcEEEEcCCCchhcHHHHHHHHhCCCeeEEEeeccCC-CCCCCCCccccCCcEEEcCCCCCC
Q 006864 307 AKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTE-EPPAKDSKLVQHENVTVTPHLGAS 372 (628)
Q Consensus 307 ~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~ga~lDV~~~-EP~~~~~~L~~~~nvilTPHig~~ 372 (628)
..+++++++++++..+........+ +..+.+..-.+...+. .|..+...||....+++||+-++.
T Consensus 79 ~~l~~~~iv~~~~s~~~~~~~~~~~-~~~~~~~~h~~~~~~~~g~~~a~~~l~~~~~~il~~~~~~~ 144 (165)
T d2f1ka2 79 PHLSPTAIVTDVASVKTAIAEPASQ-LWSGFIGGHPMAGTAAQGIDGAEENLFVNAPYVLTPTEYTD 144 (165)
T ss_dssp GGSCTTCEEEECCSCCHHHHHHHHH-HSTTCEEEEECCCCSCSSGGGCCTTTTTTCEEEEEECTTCC
T ss_pred hhcccccceeeccccchHHHHHHHH-hhcccccceeeecccccchhhhcccccCCCeEEEEeCCCCC
Confidence 7899999999998777655555444 4444443333222111 122345578888999999998877
|
| >d1sc6a3 d.58.18.1 (A:327-410) Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: ACT-like family: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain domain: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain species: Escherichia coli [TaxId: 562]
Probab=99.38 E-value=7.9e-14 Score=116.48 Aligned_cols=71 Identities=17% Similarity=0.310 Sum_probs=67.3
Q ss_pred CcEEEEeccCCCCchhhHHhhhhcCCccccceEEeeeecCccEEEEEEeCCCCCHHHHHHHhcccCccccC
Q 006864 558 GNLILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDEEPNQDSLKEIGKVHFVARIL 628 (628)
Q Consensus 558 ~~~Llv~~~D~PGvIa~V~~iL~~~~INIa~m~v~R~~~gg~Al~~i~vD~~~~~~~l~~L~~l~~v~~v~ 628 (628)
.+.|++.|+|+||++++|+++|+++|+||++|.+.|..+++.++|.+++|++++++++++|+++|+|.++|
T Consensus 11 ~~rl~i~~~d~PGvla~I~~~l~~~~iNI~~~~~~~~~~~~~a~~~i~~D~~~~~~v~~~i~~l~~Vi~vR 81 (84)
T d1sc6a3 11 GRRLMHIHENRPGVLTALNKIFAEQGVNIAAQYLQTSAQMGYVVIDIEADEDVAEKALQAMKAIPGTIRAR 81 (84)
T ss_dssp SEEEEEEEESCTTHHHHHHHHHHHTTCEEEEEEEEECSSEEEEEEEEECCHHHHHHHHHHHHTSTTEEEEE
T ss_pred CeEEEEEeCCcCCHHHHHHHHHHHcCCCHHHhccccCCCCcEEEEEEECCCCCHHHHHHHHHCCCCEEEEE
Confidence 47788899999999999999999999999999999999999999999999999999999999999998864
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=99.34 E-value=3.8e-12 Score=118.55 Aligned_cols=141 Identities=16% Similarity=0.173 Sum_probs=103.9
Q ss_pred CeEEEEecChhHHHHHHHHHcCC--CEEEEECCCC-ChhHHHHcCCc---ccCHHHH-hccCCEEEEcCCCCcccccccc
Q 006864 230 KTLAVMGFGKVGSEVARRAKGLG--MNVIAHDPYA-PADKARAVGVE---LVSFDQA-LATADFISLHMPLNPTTSKIFN 302 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~G--~~V~~~d~~~-~~~~a~~~g~~---~~sl~el-l~~aDvV~l~~Plt~~t~~li~ 302 (628)
|+|+|||+|.||.++|+.|+..| .+|++||+.. ..+.+++.+.. ..+.++. ...+|+|++|+|.. ++...+
T Consensus 2 k~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~dlIila~p~~-~~~~vl- 79 (171)
T d2g5ca2 2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLSSPVR-TFREIA- 79 (171)
T ss_dssp CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCGGGGGGTCCSEEEECSCHH-HHHHHH-
T ss_pred CEEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHhhcchhhhhhhhhhhccccccccccCCch-hhhhhh-
Confidence 57999999999999999999877 4899999985 34556666652 1244433 35799999999943 344444
Q ss_pred HHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhCCCeeEEEeeccCC-CCCCCCCccccCCcEEEcCCCCCC
Q 006864 303 DETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTE-EPPAKDSKLVQHENVTVTPHLGAS 372 (628)
Q Consensus 303 ~~~l~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~ga~lDV~~~-EP~~~~~~L~~~~nvilTPHig~~ 372 (628)
++....+++++++++++..+..-.+++.+.+....+.+.-+...+. .|..++..||+..++++|||-...
T Consensus 80 ~~l~~~~~~~~ii~d~~s~k~~~~~~~~~~~~~~~i~~hPm~G~e~sG~~~a~~~Lf~g~~~il~p~~~~~ 150 (171)
T d2g5ca2 80 KKLSYILSEDATVTDQGSVKGKLVYDLENILGKRFVGGHPIAGTEKSGVEYSLDNLYEGKKVILTPTKKTD 150 (171)
T ss_dssp HHHHHHSCTTCEEEECCSCCTHHHHHHHHHHGGGEECEEEECCCSCCSGGGCCSSTTTTCEEEECCCSSSC
T ss_pred hhhhccccccccccccccccHHHHHHHHHhhcccccccccccccccccHHHHHHHhhCCCeEEEecCCCCC
Confidence 4566679999999999998887788888878776555544433322 233456789999999999998865
|
| >d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]
Probab=99.31 E-value=2.9e-12 Score=118.77 Aligned_cols=103 Identities=25% Similarity=0.356 Sum_probs=87.6
Q ss_pred eeeecCCeEEEEecChhHHHHHHHHHcCCCEEEEECCCC-ChhHHHHcCCcccCHHHHhccCCEEEEcCCCCcccccccc
Q 006864 224 GVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA-PADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFN 302 (628)
Q Consensus 224 g~~l~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~g~~~~sl~ell~~aDvV~l~~Plt~~t~~li~ 302 (628)
..-+.||++.|+|||.+|+.+|++|+++|++|++++..+ ...++...|++..+++++++.+|+++.++. .+++|+
T Consensus 18 ~~~laGk~vvV~GYG~vGrG~A~~~rg~Ga~V~V~E~DPi~alqA~mdGf~v~~~~~a~~~aDi~vTaTG----n~~vI~ 93 (163)
T d1v8ba1 18 DFLISGKIVVICGYGDVGKGCASSMKGLGARVYITEIDPICAIQAVMEGFNVVTLDEIVDKGDFFITCTG----NVDVIK 93 (163)
T ss_dssp CCCCTTSEEEEECCSHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHTTTCEECCHHHHTTTCSEEEECCS----SSSSBC
T ss_pred CceecCCEEEEecccccchhHHHHHHhCCCEEEEEecCchhhHHHHhcCCccCchhHccccCcEEEEcCC----CCcccc
Confidence 467899999999999999999999999999999997664 334456678999999999999999999876 467899
Q ss_pred HHHHhcCCCCcEEEEcCCCch-hcHHHHH
Q 006864 303 DETFAKMKKGVRIVNVARGGV-IDEEALV 330 (628)
Q Consensus 303 ~~~l~~mk~gailIN~aRg~~-vde~aL~ 330 (628)
.+.|.+||+|++|-|++.-.. +|.++|.
T Consensus 94 ~~h~~~MKdgaIl~N~GHfd~EIdv~~L~ 122 (163)
T d1v8ba1 94 LEHLLKMKNNAVVGNIGHFDDEIQVNELF 122 (163)
T ss_dssp HHHHTTCCTTCEEEECSSTTTSBCHHHHH
T ss_pred HHHHHHhhCCeEEEeccccchhhhhHHHH
Confidence 999999999999999987654 3544443
|
| >d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Salmonella typhimurium [TaxId: 90371]
Probab=99.29 E-value=3.4e-12 Score=118.50 Aligned_cols=110 Identities=15% Similarity=0.266 Sum_probs=93.5
Q ss_pred CeEEEEecChhHHHHHHHHHcCCCEEEEECCCCC-hhHHHHcCCcc-cCHHHHhccCCEEEEcCCCCcccccccc--HHH
Q 006864 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAP-ADKARAVGVEL-VSFDQALATADFISLHMPLNPTTSKIFN--DET 305 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~g~~~-~sl~ell~~aDvV~l~~Plt~~t~~li~--~~~ 305 (628)
++|||||+|.||+.+|++|...|++|++||+... .+...+.+... .+.+|++++||+|++|+|..++.+.++. ...
T Consensus 1 MkIgiIGlG~MG~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~e~~~~~d~ii~~v~~~~~v~~v~~~~~~~ 80 (161)
T d1vpda2 1 MKVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPEAIADVIAAGAETASTAKAIAEQCDVIITMLPNSPHVKEVALGENGI 80 (161)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTCH
T ss_pred CEEEEEehhHHHHHHHHHHHHCCCeEEEEeCCcchhHHHHHhhhhhcccHHHHHhCCCeEEEEcCCHHHHHHHHhCCcch
Confidence 4799999999999999999999999999998753 23445556544 3899999999999999998888777652 457
Q ss_pred HhcCCCCcEEEEcCCCchhcHHHHHHHHhCCCee
Q 006864 306 FAKMKKGVRIVNVARGGVIDEEALVRALDSGVVA 339 (628)
Q Consensus 306 l~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~ 339 (628)
+..+++|.++||++....-....+.+.+++..+.
T Consensus 81 ~~~~~~g~iiid~sT~~p~~~~~~~~~~~~~g~~ 114 (161)
T d1vpda2 81 IEGAKPGTVLIDMSSIAPLASREISDALKAKGVE 114 (161)
T ss_dssp HHHCCTTCEEEECSCCCHHHHHHHHHHHHTTTCE
T ss_pred hhccCCCCEEEECCCCCHHHHHHHHHHHHHcCCc
Confidence 8889999999999999999999999999987774
|
| >d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.17 E-value=3e-11 Score=112.17 Aligned_cols=113 Identities=20% Similarity=0.268 Sum_probs=93.7
Q ss_pred CeEEEEecChhHHHHHHHHHcCCCEEEEECCCCC-hhHHHHcCCc-ccCHHHHhccCCEEEEcCCCCcccccccc--HHH
Q 006864 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAP-ADKARAVGVE-LVSFDQALATADFISLHMPLNPTTSKIFN--DET 305 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~g~~-~~sl~ell~~aDvV~l~~Plt~~t~~li~--~~~ 305 (628)
++|||||+|.||..+|++|...|++|.+||+... .+.....+.. ..++.+++.++|+|++++|..+..+.++. ...
T Consensus 2 ~kIg~IGlG~MG~~iA~~L~~~g~~v~~~d~~~~~~~~~~~~~~~~~~~~~e~~~~~diii~~v~~~~~~~~v~~~~~~~ 81 (162)
T d3cuma2 2 KQIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQSAVDGLVAAGASAARSARDAVQGADVVISMLPASQHVEGLYLDDDGL 81 (162)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTCEEEEECSSHHHHHHHHHTTCEECSSHHHHHTSCSEEEECCSCHHHHHHHHHSTTCH
T ss_pred CEEEEEEEHHHHHHHHHHHHHCCCeEEEEECchhhhhhhhhhhccccchhhhhccccCeeeecccchhhHHHHHhccccc
Confidence 5899999999999999999999999999998752 2334555554 34899999999999999998877666543 446
Q ss_pred HhcCCCCcEEEEcCCCchhcHHHHHHHHhCCCeeEEEee
Q 006864 306 FAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALD 344 (628)
Q Consensus 306 l~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~ga~lD 344 (628)
+..+++|.++||++....-+...+.+.+++..+ ..+|
T Consensus 82 ~~~l~~g~iiid~st~~p~~~~~~~~~~~~~gi--~~~d 118 (162)
T d3cuma2 82 LAHIAPGTLVLECSTIAPTSARKIHAAARERGL--AMLD 118 (162)
T ss_dssp HHHSCTTCEEEECSCCCHHHHHHHHHHHHHTTC--EEEE
T ss_pred cccCCCCCEEEECCCCCHHHHHHHHHHHHHCCC--cEEe
Confidence 778999999999999999999999999988776 4445
|
| >d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Sheep (Ovis orientalis aries) [TaxId: 9940]
Probab=98.96 E-value=7e-10 Score=104.05 Aligned_cols=112 Identities=15% Similarity=0.169 Sum_probs=90.3
Q ss_pred CeEEEEecChhHHHHHHHHHcCCCEEEEECCCCCh-hHHHHcCC--------c-ccCHHHHhccCCEEEEcCCCCccccc
Q 006864 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPA-DKARAVGV--------E-LVSFDQALATADFISLHMPLNPTTSK 299 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~~g~--------~-~~sl~ell~~aDvV~l~~Plt~~t~~ 299 (628)
++|||||+|.||..||++|...|++|.+||+.... +...+.+. . ..++.+.+..+|.+++++|..+.+..
T Consensus 3 ~nIg~IGlG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ii~~~~~~~~v~~ 82 (176)
T d2pgda2 3 ADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTKVLGAHSLEEMVSKLKKPRRIILLVKAGQAVDN 82 (176)
T ss_dssp BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHHTTTTTSSCEECSSHHHHHHHBCSSCEEEECSCTTHHHHH
T ss_pred CcEEEEeEhHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHhccccccccchhhhhhhhhhhcccceEEEecCchHHHHH
Confidence 68999999999999999999999999999988632 22223222 1 12566788899999999998877766
Q ss_pred cccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhCCCeeEEEee
Q 006864 300 IFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALD 344 (628)
Q Consensus 300 li~~~~l~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~ga~lD 344 (628)
.+ ...+..+++|.++||++....-+...+.+.+....+ ..+|
T Consensus 83 v~-~~l~~~~~~g~iiid~sT~~~~~~~~~~~~~~~~g~--~~ld 124 (176)
T d2pgda2 83 FI-EKLVPLLDIGDIIIDGGNSEYRDTMRRCRDLKDKGI--LFVG 124 (176)
T ss_dssp HH-HHHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTC--EEEE
T ss_pred HH-HHHHhccccCcEEEecCcchhHHHHHHHHHHHhcCC--ceec
Confidence 54 578888999999999999999999999999988777 3445
|
| >d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=98.86 E-value=1.7e-09 Score=99.40 Aligned_cols=116 Identities=16% Similarity=0.176 Sum_probs=86.3
Q ss_pred eEEEEecChhHHHHHHHHHcCCCEEEEECCCCChhH-HHHcCCcccCHHHHhccCCEEEEcCCCCccccccccHHHHhcC
Q 006864 231 TLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADK-ARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKM 309 (628)
Q Consensus 231 tiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~-a~~~g~~~~sl~ell~~aDvV~l~~Plt~~t~~li~~~~l~~m 309 (628)
+|||||+|+||..||++|...|..++++|....... ....+. ..+..+.+.++|++++++|..++.... ....+..+
T Consensus 2 kIg~IGlG~MG~~ma~~L~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~v~~~-~~~l~~~~ 79 (156)
T d2cvza2 2 KVAFIGLGAMGYPMAGHLARRFPTLVWNRTFEKALRHQEEFGS-EAVPLERVAEARVIFTCLPTTREVYEV-AEALYPYL 79 (156)
T ss_dssp CEEEECCSTTHHHHHHHHHTTSCEEEECSSTHHHHHHHHHHCC-EECCGGGGGGCSEEEECCSSHHHHHHH-HHHHTTTC
T ss_pred eEEEEeHHHHHHHHHHHHHhCCCEEEEeCCHHHHHHHHHHcCC-cccccccccceeEEEecccchhhhhhh-hccccccc
Confidence 699999999999999999988887754443322222 233333 334456777899999999977665544 46788899
Q ss_pred CCCcEEEEcCCCchhcHHHHHHHHhCCCeeEEEeeccCC
Q 006864 310 KKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTE 348 (628)
Q Consensus 310 k~gailIN~aRg~~vde~aL~~aL~~g~i~ga~lDV~~~ 348 (628)
+++.++||++....-....+.+.+++..+...-.-|++.
T Consensus 80 ~~~~~iid~sT~~p~~~~~~~~~~~~~gi~~ldapVsGg 118 (156)
T d2cvza2 80 REGTYWVDATSGEPEASRRLAERLREKGVTYLDAPVSGG 118 (156)
T ss_dssp CTTEEEEECSCCCHHHHHHHHHHHHTTTEEEEECCEESH
T ss_pred cccccccccccCCHHHHHHHHHHHHHcCCeEEeccccCc
Confidence 999999999999999999999999988874333334443
|
| >d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Conserved hypothetical protein MTH1747 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=98.82 E-value=4.7e-09 Score=95.86 Aligned_cols=104 Identities=13% Similarity=0.103 Sum_probs=77.0
Q ss_pred CeEEEEecChhHHHHHHHHHcCCCEEEEECCCCCh-hHHHHcCCcc-cCHHHHhccCCEEEEcCCCCccccccccHHHHh
Q 006864 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPA-DKARAVGVEL-VSFDQALATADFISLHMPLNPTTSKIFNDETFA 307 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~~g~~~-~sl~ell~~aDvV~l~~Plt~~t~~li~~~~l~ 307 (628)
++|||||+|+||+.+|++|...|++|++||+.... ......++.. .+.+|++++||+|++++|-.. ....+ ....
T Consensus 1 MkIgiIG~G~mG~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~diIi~~v~~~~-~~~~~-~~~~- 77 (152)
T d1i36a2 1 LRVGFIGFGEVAQTLASRLRSRGVEVVTSLEGRSPSTIERARTVGVTETSEEDVYSCPVVISAVTPGV-ALGAA-RRAG- 77 (152)
T ss_dssp CEEEEESCSHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHTCEECCHHHHHTSSEEEECSCGGG-HHHHH-HHHH-
T ss_pred CEEEEEcHHHHHHHHHHHHHHCCCeEEEEcCchhHHHHHhhhcccccccHHHHHhhcCeEEEEecCch-HHHHH-Hhhc-
Confidence 47999999999999999999999999999977533 2233233322 378999999999999999543 22222 1112
Q ss_pred cCCCCcEEEEcCCCchhcHHHHHHHHhCCC
Q 006864 308 KMKKGVRIVNVARGGVIDEEALVRALDSGV 337 (628)
Q Consensus 308 ~mk~gailIN~aRg~~vde~aL~~aL~~g~ 337 (628)
-..+..+|+++.........+.+.+++..
T Consensus 78 -~~~~~~~id~st~~p~~~~~l~~~~~~~~ 106 (152)
T d1i36a2 78 -RHVRGIYVDINNISPETVRMASSLIEKGG 106 (152)
T ss_dssp -TTCCSEEEECSCCCHHHHHHHHHHCSSSE
T ss_pred -ccCCceeeccCcCCHHHHHHHHHHHhccC
Confidence 23467999999988888888888887654
|
| >d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Haemophilus influenzae [TaxId: 727]
Probab=98.73 E-value=1.5e-08 Score=92.06 Aligned_cols=96 Identities=16% Similarity=0.187 Sum_probs=76.2
Q ss_pred ecCCeEEEEe-cChhHHHHHHHHHcCCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEcCCCCccccccccHHH
Q 006864 227 LVGKTLAVMG-FGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDET 305 (628)
Q Consensus 227 l~GktiGIIG-lG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~sl~ell~~aDvV~l~~Plt~~t~~li~~~~ 305 (628)
..-|+|+||| +|.||+.+|++|+..|++|.+||+.... ..++.+..+|++++++|... ...+-.+.
T Consensus 7 ~~~~kI~iIGg~G~mG~~la~~L~~~G~~V~~~d~~~~~-----------~~~~~~~~~~~v~~~~~~~~--~~~v~~~~ 73 (152)
T d2pv7a2 7 SDIHKIVIVGGYGKLGGLFARYLRASGYPISILDREDWA-----------VAESILANADVVIVSVPINL--TLETIERL 73 (152)
T ss_dssp TTCCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCGG-----------GHHHHHTTCSEEEECSCGGG--HHHHHHHH
T ss_pred CCCCeEEEEcCCCHHHHHHHHHHHHcCCCcEeccccccc-----------ccchhhhhccccccccchhh--heeeeecc
Confidence 3457999999 9999999999999999999999986422 23567789999999999543 23344677
Q ss_pred HhcCCCCcEEEEcCCCchhcHHHHHHHHhC
Q 006864 306 FAKMKKGVRIVNVARGGVIDEEALVRALDS 335 (628)
Q Consensus 306 l~~mk~gailIN~aRg~~vde~aL~~aL~~ 335 (628)
+..++++++++|++.-+..-.+++.+.+..
T Consensus 74 ~~~~~~~~iiiD~~Svk~~~~~~~~~~~~~ 103 (152)
T d2pv7a2 74 KPYLTENMLLADLTSVKREPLAKMLEVHTG 103 (152)
T ss_dssp GGGCCTTSEEEECCSCCHHHHHHHHHHCSS
T ss_pred cccccCCceEEEecccCHHHHHHHHHHccC
Confidence 888999999999998777666666665543
|
| >d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Streptococcus pyogenes [TaxId: 1314]
Probab=98.71 E-value=2.5e-08 Score=91.18 Aligned_cols=103 Identities=16% Similarity=0.274 Sum_probs=79.8
Q ss_pred CeEEEEecChhHHHHHHHHHcCCCEEEEECCCCCh--hHHHHcCCccc-CHHHHhccCCEEEEcCCCCccccccccHHHH
Q 006864 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPA--DKARAVGVELV-SFDQALATADFISLHMPLNPTTSKIFNDETF 306 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~--~~a~~~g~~~~-sl~ell~~aDvV~l~~Plt~~t~~li~~~~l 306 (628)
++|||||+|+||+++++.|...|.++++|++.... +..++.|+..+ +.++++++||+|+++++ |+. -++.+
T Consensus 1 MkIg~IG~G~mG~al~~~l~~~~~~i~v~~r~~~~~~~l~~~~g~~~~~~~~~~~~~~dvIilavk--p~~----~~~vl 74 (152)
T d2ahra2 1 MKIGIIGVGKMASAIIKGLKQTPHELIISGSSLERSKEIAEQLALPYAMSHQDLIDQVDLVILGIK--PQL----FETVL 74 (152)
T ss_dssp CEEEEECCSHHHHHHHHHHTTSSCEEEEECSSHHHHHHHHHHHTCCBCSSHHHHHHTCSEEEECSC--GGG----HHHHH
T ss_pred CEEEEEeccHHHHHHHHHHHhCCCeEEEEcChHHhHHhhccccceeeechhhhhhhccceeeeecc--hHh----HHHHh
Confidence 47999999999999999999999999999987422 22345677654 79999999999999996 432 15667
Q ss_pred hcCCCCcEEEEcCCCchhcHHHHHHHHhCC-CeeE
Q 006864 307 AKMKKGVRIVNVARGGVIDEEALVRALDSG-VVAQ 340 (628)
Q Consensus 307 ~~mk~gailIN~aRg~~vde~aL~~aL~~g-~i~g 340 (628)
+.++++..+|+++-| +..+.|.+.+..+ ++.-
T Consensus 75 ~~l~~~~~iis~~ag--i~~~~l~~~l~~~~~ivr 107 (152)
T d2ahra2 75 KPLHFKQPIISMAAG--ISLQRLATFVGQDLPLLR 107 (152)
T ss_dssp TTSCCCSCEEECCTT--CCHHHHHHHHCTTSCEEE
T ss_pred hhcccceeEeccccc--ccHHHHHhhhcccccchh
Confidence 889999999999876 4556677777544 4543
|
| >d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Trypanosoma brucei [TaxId: 5691]
Probab=98.58 E-value=9e-08 Score=89.14 Aligned_cols=119 Identities=13% Similarity=0.206 Sum_probs=89.2
Q ss_pred CeEEEEecChhHHHHHHHHHcCCCEEEEECCCCCh-hHHHHcCCc---------ccC---HHHHhccCCEEEEcCCCCcc
Q 006864 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPA-DKARAVGVE---------LVS---FDQALATADFISLHMPLNPT 296 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~~g~~---------~~s---l~ell~~aDvV~l~~Plt~~ 296 (628)
++|||||+|+||..+|++|...|++|.+||+.... +...+.+.. ..+ +-..+..++.+.+.++-...
T Consensus 2 MkIGvIGlG~MG~~ma~~L~~~G~~V~~~dr~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (178)
T d1pgja2 2 MDVGVVGLGVMGANLALNIAEKGFKVAVFNRTYSKSEEFMKANASAPFAGNLKAFETMEAFAASLKKPRKALILVQAGAA 81 (178)
T ss_dssp BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTTSTTGGGEEECSCHHHHHHHBCSSCEEEECCCCSHH
T ss_pred CEEEEEeehHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHcCCccccccchhhhhhhhHHHHhcccceEEEEeecCcch
Confidence 57999999999999999999999999999987532 222222321 112 34456788999999986655
Q ss_pred ccccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhCCCeeEEEeeccCCC
Q 006864 297 TSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEE 349 (628)
Q Consensus 297 t~~li~~~~l~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~ga~lDV~~~E 349 (628)
....+ ......++++.++||++....-+...+.+.|.+..+.....-|+..+
T Consensus 82 ~~~~~-~~~~~~~~~~~iii~~st~~~~~~~~~~~~l~~~~~~~ldapv~g~~ 133 (178)
T d1pgja2 82 TDSTI-EQLKKVFEKGDILVDTGNAHFKDQGRRAQQLEAAGLRFLGMGISGGE 133 (178)
T ss_dssp HHHHH-HHHHHHCCTTCEEEECCCCCHHHHHHHHHHHHTTTCEEEEEEEESHH
T ss_pred hhhhh-hhhhhhccccceecccCccchhHHHHHHHHHhhcceeEecccccCCc
Confidence 55554 45567799999999999999999999999998887755444455543
|
| >d2iafa1 d.81.2.1 (A:4-148) L-serine dehydratase SdhL, N-terminal domain {Legionella pneumophila [TaxId: 446]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: FwdE/GAPDH domain-like superfamily: Serine metabolism enzymes domain family: Serine dehydratase beta chain-like domain: L-serine dehydratase SdhL, N-terminal domain species: Legionella pneumophila [TaxId: 446]
Probab=98.53 E-value=5.1e-08 Score=88.52 Aligned_cols=111 Identities=8% Similarity=-0.102 Sum_probs=72.8
Q ss_pred cHHHHHHHHhHHHHHHhcCCCCceEEEEEEeecCCCCCCCcccchHHHHHhhccccccCcccccchHhHHhh--------
Q 006864 416 PYVVLAKKLGRLAVQLVSGGSGIKSVKLIYRSARDPDDLDTRILRAMITKGIIEPISASFINLVNADFTAKQ-------- 487 (628)
Q Consensus 416 p~~~lAerlG~la~qL~~g~~~~~~v~i~~~Gs~a~~~~~~~~~~~a~l~GlL~~~~~~~vnlvNA~~iAke-------- 487 (628)
|+..-..-+..|..+.+.. .+.+|+++++||++ .|.++|++|+|++.||+ ++.++.++..++..+.++
T Consensus 7 PmrAa~~F~~~l~~~~~~~--~~~~v~v~LyGSLa-~TG~GHgTD~Av~~GL~-G~~P~~~d~~~~~~~~~~i~~~~~l~ 82 (145)
T d2iafa1 7 PMLAANAFLQLLEQKNLFD--KTQRVKVELYGSLA-LTGKGHGTDKAILNGLE-NKAPETVDPASMIPRMHEILDSNLLN 82 (145)
T ss_dssp HHHHHHHHHHHHHHTTCTT--TCCEEEEEEEHHHH-HTCTTSSHHHHHHHHTT-TCCCC-----CHHHHHHHHHHHTEEE
T ss_pred HHHHHHHHHHHHHhCcccC--CccEEEEEEehhhh-hcCCccCccHHHHhhcc-CCCccccChhhhHHHHHHHHhcCccc
Confidence 4444333455565555444 68999999999999 99999999999999999 556665666655443322
Q ss_pred ----------cCceEEEEEeecCCCCCCCCceEEEEEEecccccceeeCCCcE-EEEEEEEEC-Cee
Q 006864 488 ----------KGLRISEERVVADSSPEFPIDSIQVQLSNVDSKFAAAVSENGE-ISIEGKVKF-GIP 542 (628)
Q Consensus 488 ----------~GI~i~~~~~~~~~~~~~~~ntv~v~l~~~~~~~~~~~~~~~~-~~v~Gt~~g-G~~ 542 (628)
.+.++.|...+. ...|||++++++. ..++.. .+.+..|+| |.+
T Consensus 83 l~~~~~i~f~~~~di~f~~~~~---lp~HpNgm~f~a~---------d~~g~~l~~~tyySIGGGFI 137 (145)
T d2iafa1 83 LAGKKEIPFHEATDFLFLQKEL---LPKHSNGMRFSAF---------DGNANLLIEQVYYSIGGGFI 137 (145)
T ss_dssp ETTTEEEECCHHHHEEEETTCC---CSSCSSEEEEEEE---------CTTSCEEEEEEEEECSSSCE
T ss_pred ccccccccccccccceeccccc---CCCCCCccEEEEE---------CCCCCEEEEEEEEEcCCeEE
Confidence 223455543322 2379999999997 244444 378899998 544
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=98.43 E-value=3.2e-07 Score=84.70 Aligned_cols=105 Identities=23% Similarity=0.237 Sum_probs=73.8
Q ss_pred CCeEEEEecChhHHHHHHHHHcCCCEEEEECCCCC-hhHHHHcCC---------------c-ccCHHHHhccCCEEEEcC
Q 006864 229 GKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAP-ADKARAVGV---------------E-LVSFDQALATADFISLHM 291 (628)
Q Consensus 229 GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~g~---------------~-~~sl~ell~~aDvV~l~~ 291 (628)
.||++|||.|.+|..+|..|...|++|.+||++.. .+...+.+. . ..++.|.+++||+|++++
T Consensus 1 sk~iaIiGaG~~G~~~A~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~aD~iii~v 80 (184)
T d1bg6a2 1 SKTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKDADVILIVV 80 (184)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHTTCSEEEECS
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHhHhcCCCEEEEEE
Confidence 38999999999999999999999999999998742 222223221 0 136899999999999999
Q ss_pred CCCccccccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhCC
Q 006864 292 PLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSG 336 (628)
Q Consensus 292 Plt~~t~~li~~~~l~~mk~gailIN~aRg~~vde~aL~~aL~~g 336 (628)
|-. .++..+ ++.-..++++.+++-+ -|.......+.+.+...
T Consensus 81 ~~~-~~~~~~-~~i~~~l~~~~~iv~~-~g~~~~~~~~~~~~~~~ 122 (184)
T d1bg6a2 81 PAI-HHASIA-ANIASYISEGQLIILN-PGATGGALEFRKILREN 122 (184)
T ss_dssp CGG-GHHHHH-HHHGGGCCTTCEEEES-SCCSSHHHHHHHHHHHT
T ss_pred chh-HHHHHH-HHhhhccCCCCEEEEe-CCCCccHHHHHHHHHHh
Confidence 833 334333 4455678999988854 34444444455555443
|
| >d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Phenylalanine dehydrogenase species: Rhodococcus sp., M4 [TaxId: 1831]
Probab=98.40 E-value=4.8e-07 Score=86.52 Aligned_cols=106 Identities=24% Similarity=0.315 Sum_probs=85.4
Q ss_pred eecCCeEEEEecChhHHHHHHHHHcCCCEEEEECCCC-ChhHHHHcCCcccCHHHHhc-cCCEEEEcCCCCccccccccH
Q 006864 226 SLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA-PADKARAVGVELVSFDQALA-TADFISLHMPLNPTTSKIFND 303 (628)
Q Consensus 226 ~l~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~g~~~~sl~ell~-~aDvV~l~~Plt~~t~~li~~ 303 (628)
.|.|||++|-|+|++|+.+|+.|..+|++|+++|... ........+.+.++.++++. +||+++-|. +.+.|++
T Consensus 24 ~L~gk~v~IqG~G~VG~~~A~~L~~~Gakvvv~d~d~~~~~~~~~~g~~~~~~~~~~~~~~DI~iPcA-----~~~~I~~ 98 (201)
T d1c1da1 24 SLDGLTVLVQGLGAVGGSLASLAAEAGAQLLVADTDTERVAHAVALGHTAVALEDVLSTPCDVFAPCA-----MGGVITT 98 (201)
T ss_dssp CSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECCGGGGGGCCCSEEEECS-----CSCCBCH
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEecchHHHHHHHHhhcccccCccccccccceeeeccc-----ccccccH
Confidence 5999999999999999999999999999999999875 23445667888888999887 799988664 4688999
Q ss_pred HHHhcCCCCcEEEEcCCCchhcHHHHHHHHhCCCe
Q 006864 304 ETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVV 338 (628)
Q Consensus 304 ~~l~~mk~gailIN~aRg~~vde~aL~~aL~~g~i 338 (628)
+...+++- -+++..+.+.+.++++ -+.|++..|
T Consensus 99 ~~a~~i~a-k~i~e~AN~p~~~~~~-~~~L~~rgI 131 (201)
T d1c1da1 99 EVARTLDC-SVVAGAANNVIADEAA-SDILHARGI 131 (201)
T ss_dssp HHHHHCCC-SEECCSCTTCBCSHHH-HHHHHHTTC
T ss_pred HHHhhhhh-heeeccCCCCcchhhH-HHHhcccce
Confidence 99999974 4777778888777754 445555444
|
| >d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hypothetical protein TM1727 species: Thermotoga maritima [TaxId: 2336]
Probab=98.29 E-value=8.7e-08 Score=86.83 Aligned_cols=87 Identities=9% Similarity=-0.025 Sum_probs=58.5
Q ss_pred EEEEecChhHHHHHHHHHcCCCEEEEECCCCCh--hHHHHcCCcccCHHHHhccCCEEEEcCCCCccccccccHHHHhcC
Q 006864 232 LAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPA--DKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKM 309 (628)
Q Consensus 232 iGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~--~~a~~~g~~~~sl~ell~~aDvV~l~~Plt~~t~~li~~~~l~~m 309 (628)
|||||+|+||+.+++.|+.-+..+.+|+|.... ..+...+....++++++++||+|++|+|-. .. .+.+..+
T Consensus 2 IgfIG~G~mg~~l~~~L~~~~~~~~v~~R~~~~~~~l~~~~~~~~~~~~~~~~~~DiVil~v~d~-~i-----~~v~~~l 75 (153)
T d2i76a2 2 LNFVGTGTLTRFFLECLKDRYEIGYILSRSIDRARNLAEVYGGKAATLEKHPELNGVVFVIVPDR-YI-----KTVANHL 75 (153)
T ss_dssp CEEESCCHHHHHHHHTTC----CCCEECSSHHHHHHHHHHTCCCCCSSCCCCC---CEEECSCTT-TH-----HHHHTTT
T ss_pred EEEEeCcHHHHHHHHHHHhCCCEEEEEeCChhhhcchhhcccccccchhhhhccCcEEEEeccch-hh-----hHHHhhh
Confidence 799999999999999998744434678887522 233444555668899999999999999932 22 3345555
Q ss_pred -CCCcEEEEcCCCchh
Q 006864 310 -KKGVRIVNVARGGVI 324 (628)
Q Consensus 310 -k~gailIN~aRg~~v 324 (628)
+++.++|+|+.+.-.
T Consensus 76 ~~~~~ivi~~s~~~~~ 91 (153)
T d2i76a2 76 NLGDAVLVHCSGFLSS 91 (153)
T ss_dssp CCSSCCEEECCSSSCG
T ss_pred cccceeeeecccchhh
Confidence 479999999876543
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=98.29 E-value=1.5e-06 Score=80.33 Aligned_cols=119 Identities=26% Similarity=0.318 Sum_probs=87.5
Q ss_pred ecCCeEEEEecChhHHHHHHHHHcCCCEEEEECCCCCh-hHHHHcC---Ccc-----cCHHHHhccCCEEEEcCCC-Ccc
Q 006864 227 LVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPA-DKARAVG---VEL-----VSFDQALATADFISLHMPL-NPT 296 (628)
Q Consensus 227 l~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~~g---~~~-----~sl~ell~~aDvV~l~~Pl-t~~ 296 (628)
+.-.++.|||.|..|..-++.++++|.+|.++|.+... ++.+... ++. ..+++.+++||+|+.++=. ...
T Consensus 30 v~pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~aDivI~aalipG~~ 109 (168)
T d1pjca1 30 VKPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGSRVELLYSNSAEIETAVAEADLLIGAVLVPGRR 109 (168)
T ss_dssp BCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGGSEEEECCHHHHHHHHHTCSEEEECCCCTTSS
T ss_pred CCCcEEEEECCChHHHHHHHHHhhCCCEEEEEeCcHHHHHHHHHhhcccceeehhhhhhHHHhhccCcEEEEeeecCCcc
Confidence 56789999999999999999999999999999987532 2222221 111 1478999999999887642 334
Q ss_pred ccccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhCCCeeEEEeeccCCCCCCCCCccccCCcEE
Q 006864 297 TSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVT 364 (628)
Q Consensus 297 t~~li~~~~l~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~ga~lDV~~~EP~~~~~~L~~~~nvi 364 (628)
.-.+|.++.++.||||+++||++ .+.|.. +...+|-.-++|.+...+|+
T Consensus 110 aP~lIt~~mv~~Mk~GSVIVDva-------------idqGG~------~Ets~ptt~~~p~~~~~gV~ 158 (168)
T d1pjca1 110 APILVPASLVEQMRTGSVIVDVA-------------VDQGGC------VETLHPTSHTQPTYEVFGVV 158 (168)
T ss_dssp CCCCBCHHHHTTSCTTCEEEETT-------------CTTCCS------BTTCCCCCSSSCEEEETTEE
T ss_pred cCeeecHHHHhhcCCCcEEEEee-------------cCCCCc------cccCCCCcccCCeEEECCEE
Confidence 67899999999999999999996 455544 13345654456777666664
|
| >d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=98.28 E-value=2.2e-06 Score=80.32 Aligned_cols=93 Identities=25% Similarity=0.387 Sum_probs=73.6
Q ss_pred eecCCeEEEEecChhHHHHHHHHHcCCCEEEEECCCC-ChhHHHHcCCccc-----------------------------
Q 006864 226 SLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA-PADKARAVGVELV----------------------------- 275 (628)
Q Consensus 226 ~l~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~g~~~~----------------------------- 275 (628)
.+.-.++.|||.|..|..-++.++++|.+|.+||.+. ..++.++++.+++
T Consensus 26 ~V~pa~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~~~~~~l~~l~~~~i~~~~~~~~~~~~~~gyA~~~s~~~~~~~~ 105 (183)
T d1l7da1 26 TVPPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQA 105 (183)
T ss_dssp EECCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHHHTTCEECCC-----------------------CCHH
T ss_pred CcCCcEEEEEcCcHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhhcceEEEeccccccccccccchhhcCHHHHHHHH
Confidence 3566799999999999999999999999999999876 4455555553322
Q ss_pred -CHHHHhccCCEEEEcC--CCCccccccccHHHHhcCCCCcEEEEcC
Q 006864 276 -SFDQALATADFISLHM--PLNPTTSKIFNDETFAKMKKGVRIVNVA 319 (628)
Q Consensus 276 -sl~ell~~aDvV~l~~--Plt~~t~~li~~~~l~~mk~gailIN~a 319 (628)
.+.+.+++||+|+.++ |-. ..-.++.++.++.||||+++||++
T Consensus 106 ~~l~~~l~~aDlVI~talipG~-~aP~lit~~mv~~Mk~GSVIVDva 151 (183)
T d1l7da1 106 EAVLKELVKTDIAITTALIPGK-PAPVLITEEMVTKMKPGSVIIDLA 151 (183)
T ss_dssp HHHHHHHTTCSEEEECCCCTTS-CCCCCSCHHHHTTSCTTCEEEETT
T ss_pred HHHHHHHHhhhhheeeeecCCc-ccceeehHHHHHhcCCCcEEEEEe
Confidence 1345588999998654 422 356789999999999999999996
|
| >d1np3a2 c.2.1.6 (A:1-182) Class I ketol-acid reductoisomerase (KARI) {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Class I ketol-acid reductoisomerase (KARI) species: Pseudomonas aeruginosa [TaxId: 287]
Probab=98.24 E-value=5.8e-07 Score=83.28 Aligned_cols=91 Identities=25% Similarity=0.420 Sum_probs=75.4
Q ss_pred eecCCeEEEEecChhHHHHHHHHHcCCCEEEEECCCC--ChhHHHHcCCcccCHHHHhccCCEEEEcCCCCccccccccH
Q 006864 226 SLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA--PADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFND 303 (628)
Q Consensus 226 ~l~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~--~~~~a~~~g~~~~sl~ell~~aDvV~l~~Plt~~t~~li~~ 303 (628)
-|++|+|+|||||.-|++=|..|+.-|++|++--+.- +.+.+++.|++..+++|+.++||+|.+.+|-. ....+..+
T Consensus 13 ~ik~k~IaViGYGsQG~AhAlNLrDSG~~V~VGLr~gs~s~~~A~~~Gf~v~~~~eA~~~aDiim~L~PD~-~q~~vy~~ 91 (182)
T d1np3a2 13 IIQGKKVAIIGYGSQGHAHACNLKDSGVDVTVGLRSGSATVAKAEAHGLKVADVKTAVAAADVVMILTPDE-FQGRLYKE 91 (182)
T ss_dssp HHHTSCEEEECCSHHHHHHHHHHHHTTCCEEEECCTTCHHHHHHHHTTCEEECHHHHHHTCSEEEECSCHH-HHHHHHHH
T ss_pred HHCCCEEEEEeeCcHhHHHHhhhhhcCCCEEEEcCCCCccHHHHhhhccccccHHHHhhhcCeeeeecchH-HHHHHHHH
Confidence 4789999999999999999999999999987754433 34677888999999999999999999999932 23455667
Q ss_pred HHHhcCCCCcEEEE
Q 006864 304 ETFAKMKKGVRIVN 317 (628)
Q Consensus 304 ~~l~~mk~gailIN 317 (628)
+....||+|+.+.=
T Consensus 92 ~I~p~lk~g~~L~F 105 (182)
T d1np3a2 92 EIEPNLKKGATLAF 105 (182)
T ss_dssp HTGGGCCTTCEEEE
T ss_pred hhhhhcCCCcEEEE
Confidence 78888999988753
|
| >d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Neisseria meningitidis, serogroup B [TaxId: 487]
Probab=98.21 E-value=5.3e-07 Score=81.88 Aligned_cols=104 Identities=19% Similarity=0.261 Sum_probs=71.9
Q ss_pred CeEEEEecChhHHHHHHHHHcCC-CEEEEECCCCCh--hHHHHcCCcccCHHHHhccCCEEEEcCCCCccccccccHHHH
Q 006864 230 KTLAVMGFGKVGSEVARRAKGLG-MNVIAHDPYAPA--DKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETF 306 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~G-~~V~~~d~~~~~--~~a~~~g~~~~sl~ell~~aDvV~l~~Plt~~t~~li~~~~l 306 (628)
++|||||+|+||+++++.|...| .+|.+|||.... ...++.|+...+-.+.+.+||+|+++++ |+.. .+.+
T Consensus 1 MkI~fIG~G~MG~ai~~~l~~~~~~~i~v~~r~~~~~~~l~~~~~~~~~~~~~~v~~~Div~lavk--P~~~----~~v~ 74 (152)
T d1yqga2 1 MNVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGAEKRERLEKELGVETSATLPELHSDDVLILAVK--PQDM----EAAC 74 (152)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCSCEEEEECSSHHHHHHHHHHTCCEEESSCCCCCTTSEEEECSC--HHHH----HHHH
T ss_pred CEEEEEcCcHHHHHHHHHHHHCCCCcEEEEeCChhHHHHhhhhcccccccccccccccceEEEecC--HHHH----HHhH
Confidence 47999999999999999876555 899999998532 2234567766644455788999999997 4211 2233
Q ss_pred hcC-CCCcEEEEcCCCchhcHHHHHHHHhC-CCeeEE
Q 006864 307 AKM-KKGVRIVNVARGGVIDEEALVRALDS-GVVAQA 341 (628)
Q Consensus 307 ~~m-k~gailIN~aRg~~vde~aL~~aL~~-g~i~ga 341 (628)
+.+ +.+.++|.+.-|- ..+.+.+.+.. .++..+
T Consensus 75 ~~l~~~~~~viS~~ag~--~~~~l~~~l~~~~~iir~ 109 (152)
T d1yqga2 75 KNIRTNGALVLSVAAGL--SVGTLSRYLGGTRRIVRV 109 (152)
T ss_dssp TTCCCTTCEEEECCTTC--CHHHHHHHTTSCCCEEEE
T ss_pred HHHhhcccEEeecccCC--CHHHHHHHhCcCcceEee
Confidence 333 3478999987665 45567777743 356544
|
| >d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Siroheme synthase CysG, domain 1 species: Salmonella typhimurium [TaxId: 90371]
Probab=98.15 E-value=9.4e-07 Score=76.30 Aligned_cols=91 Identities=14% Similarity=0.029 Sum_probs=69.8
Q ss_pred eeeecCCeEEEEecChhHHHHHHHHHcCCCEEEEECCCCChhHHH---HcCCccc---CHHHHhccCCEEEEcCCCCccc
Q 006864 224 GVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKAR---AVGVELV---SFDQALATADFISLHMPLNPTT 297 (628)
Q Consensus 224 g~~l~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~---~~g~~~~---sl~ell~~aDvV~l~~Plt~~t 297 (628)
-.+++||+++|||.|.+|.+-|+.|..+|++|+++++....+... ..+++.. --++.+..+|+|+.+..
T Consensus 7 ~l~l~~k~vlVvG~G~va~~ka~~ll~~ga~v~v~~~~~~~~~~~~~~~~~i~~~~~~~~~~dl~~~~lv~~at~----- 81 (113)
T d1pjqa1 7 FCQLRDRDCLIVGGGDVAERKARLLLEAGARLTVNALTFIPQFTVWANEGMLTLVEGPFDETLLDSCWLAIAATD----- 81 (113)
T ss_dssp EECCBTCEEEEECCSHHHHHHHHHHHHTTBEEEEEESSCCHHHHHHHTTTSCEEEESSCCGGGGTTCSEEEECCS-----
T ss_pred EEEeCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeccCChHHHHHHhcCCceeeccCCCHHHhCCCcEEeecCC-----
Confidence 358999999999999999999999999999999999987554322 1223221 12355778899887653
Q ss_pred cccccHHHHhcCCCCcEEEEcC
Q 006864 298 SKIFNDETFAKMKKGVRIVNVA 319 (628)
Q Consensus 298 ~~li~~~~l~~mk~gailIN~a 319 (628)
...+|++..+.+|+..++||++
T Consensus 82 d~~~n~~i~~~a~~~~ilVNv~ 103 (113)
T d1pjqa1 82 DDTVNQRVSDAAESRRIFCNVV 103 (113)
T ss_dssp CHHHHHHHHHHHHHTTCEEEET
T ss_pred CHHHHHHHHHHHHHcCCEEEeC
Confidence 3456888888899999999975
|
| >d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamyl tRNA-reductase middle domain species: Archaeon Methanopyrus kandleri [TaxId: 2320]
Probab=98.14 E-value=2.5e-06 Score=78.31 Aligned_cols=93 Identities=24% Similarity=0.349 Sum_probs=70.2
Q ss_pred eecCCeEEEEecChhHHHHHHHHHcCCC-EEEEECCCCC--hhHHHHcCCccc---CHHHHhccCCEEEEcCCCCccccc
Q 006864 226 SLVGKTLAVMGFGKVGSEVARRAKGLGM-NVIAHDPYAP--ADKARAVGVELV---SFDQALATADFISLHMPLNPTTSK 299 (628)
Q Consensus 226 ~l~GktiGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~~--~~~a~~~g~~~~---sl~ell~~aDvV~l~~Plt~~t~~ 299 (628)
.+.++++.|||.|.||+.+++.|...|. ++.+++|... ...+...+.... ++.+.+.++|+|+.|++. ...
T Consensus 21 ~l~~~~ilviGaG~~g~~v~~~L~~~g~~~i~v~nRt~~ka~~l~~~~~~~~~~~~~~~~~l~~~Divi~atss---~~~ 97 (159)
T d1gpja2 21 SLHDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDLGGEAVRFDELVDHLARSDVVVSATAA---PHP 97 (159)
T ss_dssp CCTTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHHTCEECCGGGHHHHHHTCSEEEECCSS---SSC
T ss_pred CcccCeEEEECCCHHHHHHHHHHHhcCCcEEEEEcCcHHHHHHHHHhhhcccccchhHHHHhccCCEEEEecCC---CCc
Confidence 5889999999999999999999999998 6999998742 234455565443 677788899999999863 356
Q ss_pred cccHHHHhcC------CCCcEEEEcCCC
Q 006864 300 IFNDETFAKM------KKGVRIVNVARG 321 (628)
Q Consensus 300 li~~~~l~~m------k~gailIN~aRg 321 (628)
+|+++.++.. ++..++||.+..
T Consensus 98 ii~~~~i~~~~~~r~~~~~~~iiDlavP 125 (159)
T d1gpja2 98 VIHVDDVREALRKRDRRSPILIIDIANP 125 (159)
T ss_dssp CBCHHHHHHHHHHCSSCCCEEEEECCSS
T ss_pred cccHhhhHHHHHhcccCCCeEEEeecCC
Confidence 7887776532 234577776643
|
| >d1qmga2 c.2.1.6 (A:82-307) Class II ketol-acid reductoisomerase (KARI) {Spinach (Spinacia oleracea) [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Class II ketol-acid reductoisomerase (KARI) species: Spinach (Spinacia oleracea) [TaxId: 3562]
Probab=98.02 E-value=4.7e-06 Score=79.64 Aligned_cols=89 Identities=20% Similarity=0.291 Sum_probs=70.6
Q ss_pred ecC-CeEEEEecChhHHHHHHHHHc------CCCEEEE-ECCC-CChhHHHHcCCc-----ccCHHHHhccCCEEEEcCC
Q 006864 227 LVG-KTLAVMGFGKVGSEVARRAKG------LGMNVIA-HDPY-APADKARAVGVE-----LVSFDQALATADFISLHMP 292 (628)
Q Consensus 227 l~G-ktiGIIGlG~IG~~vA~~l~~------~G~~V~~-~d~~-~~~~~a~~~g~~-----~~sl~ell~~aDvV~l~~P 292 (628)
+.| |+|+|||||.-|.+=|..|+. .|.+|++ ..+. .+.+++++.|++ ..+.+|+.++||+|.+.+|
T Consensus 41 ~kg~KkIaViGYGsQG~AhAlNLrDSG~~~~sgv~V~VGLr~gs~S~~kA~~dGf~v~~~~v~~v~EAv~~ADiVmiLlP 120 (226)
T d1qmga2 41 FKGIKQIGVIGWGSQAPAQAQNLKDSLTEAKSDVVVKIGLRKGSNSFAEARAAGFSEENGTLGDMWETISGSDLVLLLIS 120 (226)
T ss_dssp TTTCSEEEEECCSSHHHHHHHHHHHHHHHTTCCCEEEEEECTTCSCHHHHHHTTCCGGGTCEEEHHHHHHTCSEEEECSC
T ss_pred hcCCCEEEEEEeccHHHHHHHhChhhcccccCCceEEEEeCCCChhHHHHHHcCCccCCCcccCHHHHHhhCCEEEEecc
Confidence 678 999999999999999999997 5677654 4443 466788888986 4578999999999999999
Q ss_pred CCccccccccHHHHhcCCCCcEEEE
Q 006864 293 LNPTTSKIFNDETFAKMKKGVRIVN 317 (628)
Q Consensus 293 lt~~t~~li~~~~l~~mk~gailIN 317 (628)
-..+ ..+. ++....||+|+.+.=
T Consensus 121 De~Q-~~vy-~~I~p~Lk~G~~L~F 143 (226)
T d1qmga2 121 DSAQ-ADNY-EKVFSHMKPNSILGL 143 (226)
T ss_dssp HHHH-HHHH-HHHHHHSCTTCEEEE
T ss_pred hHHH-HHHH-HHHHHhcCCCceeee
Confidence 4333 3455 468889999988764
|
| >d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Short chain L-3-hydroxyacyl CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.97 E-value=1.9e-05 Score=74.34 Aligned_cols=131 Identities=18% Similarity=0.155 Sum_probs=88.8
Q ss_pred CeEEEEecChhHHHHHHHHHcCCCEEEEECCCCCh-hHH-----------HHcC------------------Cc-ccCHH
Q 006864 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPA-DKA-----------RAVG------------------VE-LVSFD 278 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a-----------~~~g------------------~~-~~sl~ 278 (628)
|+|+|||.|.||+.+|..+...|++|+.||+.... +.+ .+.+ +. ..++.
T Consensus 5 kkvaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~~l~~a~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~d~~ 84 (192)
T d1f0ya2 5 KHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATSTDAA 84 (192)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEEESCHH
T ss_pred EEEEEECcCHHHHHHHHHHHhCCCcEEEEECChHHHHHHHhhHHHHHHHHHHhhhhccchhhHHHHHHHHhhccccchhH
Confidence 79999999999999999999999999999987421 111 0011 11 22678
Q ss_pred HHhccCCEEEEcCCCCccccccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhCC-CeeEEEeeccCCCCCCCCCcc
Q 006864 279 QALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSG-VVAQAALDVFTEEPPAKDSKL 357 (628)
Q Consensus 279 ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~~vde~aL~~aL~~g-~i~ga~lDV~~~EP~~~~~~L 357 (628)
+.+++||+|+=++|-+-+.+.-+-++.=+.++++++|.....+-.+ ..|...+... ++ .++..|.+-+ -.||
T Consensus 85 ~a~~~ad~ViEav~E~l~~K~~v~~~l~~~~~~~~ilasnTS~l~i--~~la~~~~~p~r~--ig~HffnP~~---~~~l 157 (192)
T d1f0ya2 85 SVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTSSLQI--TSIANATTRQDRF--AGLHFFNPVP---VMKL 157 (192)
T ss_dssp HHTTSCSEEEECCCSCHHHHHHHHHHHTTTSCTTCEEEECCSSSCH--HHHHTTSSCGGGE--EEEEECSSTT---TCCE
T ss_pred hhhcccceehhhcccchhHHHHHHHHHhhhcccCceeeccCccccc--chhhhhccCHhHE--EeeccccccC---cccE
Confidence 8999999999999987777765555555568999998877655443 4455655543 55 4445443221 2344
Q ss_pred ccCCcEEEcCCCCCC
Q 006864 358 VQHENVTVTPHLGAS 372 (628)
Q Consensus 358 ~~~~nvilTPHig~~ 372 (628)
|=+.||-..+
T Consensus 158 -----VEIv~g~~T~ 167 (192)
T d1f0ya2 158 -----VEVIKTPMTS 167 (192)
T ss_dssp -----EEEECCTTCC
T ss_pred -----EEEcCCCCCC
Confidence 4466666555
|
| >d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Leucine dehydrogenase species: Bacillus sphaericus [TaxId: 1421]
Probab=97.83 E-value=4e-05 Score=74.27 Aligned_cols=109 Identities=21% Similarity=0.282 Sum_probs=85.0
Q ss_pred eeeecCCeEEEEecChhHHHHHHHHHcCCCEEEEECCCCCh--hHHHHcCCcccCHHHHhc-cCCEEEEcCCCCcccccc
Q 006864 224 GVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPA--DKARAVGVELVSFDQALA-TADFISLHMPLNPTTSKI 300 (628)
Q Consensus 224 g~~l~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~--~~a~~~g~~~~sl~ell~-~aDvV~l~~Plt~~t~~l 300 (628)
..+|.|||+.|-|+|++|+.+|+.|...|++|++.|..... ......|....+.++++. .||+++-|. ..+.
T Consensus 34 ~~~l~g~~v~IqG~GnVG~~~a~~L~~~Gakvv~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~cDIl~PcA-----~~~~ 108 (230)
T d1leha1 34 SDSLEGLAVSVQGLGNVAKALCKKLNTEGAKLVVTDVNKAAVSAAVAEEGADAVAPNAIYGVTCDIFAPCA-----LGAV 108 (230)
T ss_dssp SCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHCCEECCGGGTTTCCCSEEEECS-----CSCC
T ss_pred CCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEeecccHHHHHHHHHhcCCcccCCcccccccccEecccc-----cccc
Confidence 35699999999999999999999999999999999976421 223445677778888775 699999876 4788
Q ss_pred ccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhCCCe
Q 006864 301 FNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVV 338 (628)
Q Consensus 301 i~~~~l~~mk~gailIN~aRg~~vde~aL~~aL~~g~i 338 (628)
|+.+...+++- .+|+-.|..++.+.++.....+.|.+
T Consensus 109 I~~~~~~~l~a-k~Ive~ANn~~t~~ea~~~L~~rGI~ 145 (230)
T d1leha1 109 LNDFTIPQLKA-KVIAGSADNQLKDPRHGKYLHELGIV 145 (230)
T ss_dssp BSTTHHHHCCC-SEECCSCSCCBSSHHHHHHHHHHTCE
T ss_pred cChHHhhccCc-cEEEecccCCCCCchHHHHHHhhCcE
Confidence 89988888874 47888888888887775444444444
|
| >d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: GDP-mannose 6-dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.80 E-value=4e-05 Score=72.34 Aligned_cols=143 Identities=15% Similarity=0.146 Sum_probs=84.2
Q ss_pred CeEEEEecChhHHHHHHHHHcCCCEEEEECCCCChhHH--------------------HHcC-Cc-ccCHHHHhccCCEE
Q 006864 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKA--------------------RAVG-VE-LVSFDQALATADFI 287 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a--------------------~~~g-~~-~~sl~ell~~aDvV 287 (628)
++|+|||+|.+|..+|..+...|++|++||.....-.. ...+ .. ..++++.+..||++
T Consensus 1 MkI~ViGlG~vGl~~a~~la~~g~~V~g~D~n~~~i~~ln~g~~p~~e~~~~~~l~~~~~~~~~~~~~~~~~~i~~~d~i 80 (202)
T d1mv8a2 1 MRISIFGLGYVGAVCAGCLSARGHEVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQGRQTGRLSGTTDFKKAVLDSDVS 80 (202)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHHHHHTCSEE
T ss_pred CEEEEECCCHhHHHHHHHHHhCCCcEEEEeCCHHHHHHhcccCCcccchhhhhhhhhhhcccccccCCCHHHHHhhCCEE
Confidence 57999999999999999999999999999974211000 0111 11 23688999999999
Q ss_pred EEcCCCCccccc---------ccc--HHHHhcCCCCcEEEEcCCCchhcHHHHHHHH-hC--CCeeEEEee-ccCCCCCC
Q 006864 288 SLHMPLNPTTSK---------IFN--DETFAKMKKGVRIVNVARGGVIDEEALVRAL-DS--GVVAQAALD-VFTEEPPA 352 (628)
Q Consensus 288 ~l~~Plt~~t~~---------li~--~~~l~~mk~gailIN~aRg~~vde~aL~~aL-~~--g~i~ga~lD-V~~~EP~~ 352 (628)
++|+|......+ .++ ...+...+++.++|-.+...+=-.+.+...+ ++ +...+--+. +|.+|=+.
T Consensus 81 ~i~VpTP~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~liii~STv~pGtt~~~~~~~l~~~~~~~~~~~~~~~~~PE~~~ 160 (202)
T d1mv8a2 81 FICVGTPSKKNGDLDLGYIETVCREIGFAIREKSERHTVVVRSTVLPGTVNNVVIPLIEDCSGKKAGVDFGVGTNPEFLR 160 (202)
T ss_dssp EECCCCCBCTTSSBCCHHHHHHHHHHHHHHTTCCSCCEEEECSCCCTTHHHHTHHHHHHHHHSCCBTTTBEEEECCCCCC
T ss_pred EEecCccccccccccchhhhhhhhhhhheeecccCCcceeeccccCCcchhhhhhhhhhccccccccccccchhhhhhhc
Confidence 999995311111 111 1234456788999998876554444443322 11 111111011 25566544
Q ss_pred CCC---ccccCCcEEEcCCCCCCcHHH
Q 006864 353 KDS---KLVQHENVTVTPHLGASTKEA 376 (628)
Q Consensus 353 ~~~---~L~~~~nvilTPHig~~T~ea 376 (628)
... .+...|.+|+ |+.+.++
T Consensus 161 ~G~a~~d~~~~~~iVi----G~~~~~~ 183 (202)
T d1mv8a2 161 ESTAIKDYDFPPMTVI----GELDKQT 183 (202)
T ss_dssp TTSHHHHHHSCSCEEE----EESSHHH
T ss_pred ccchhhhhcCCCeEEE----EeCCHHH
Confidence 333 3456677665 4455443
|
| >d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD species: Escherichia coli [TaxId: 562]
Probab=97.75 E-value=9.9e-06 Score=67.25 Aligned_cols=65 Identities=23% Similarity=0.246 Sum_probs=48.0
Q ss_pred eecCCeEEEEecChhHHHHHHHHHcCCCEEEEECCCCChhHHHHc--CCcc--cC-HHHHhccCCEEEEc
Q 006864 226 SLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAV--GVEL--VS-FDQALATADFISLH 290 (628)
Q Consensus 226 ~l~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~--g~~~--~s-l~ell~~aDvV~l~ 290 (628)
+++||++.|+|+|..|+++|+.|...|++|++||.....+....+ +... .. -++.+.+.|+|++.
T Consensus 2 ~~~~K~v~ViGlG~sG~s~a~~L~~~g~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~S 71 (93)
T d2jfga1 2 DYQGKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTPPGLDKLPEAVERHTGSLNDEWLMAADLIVAS 71 (93)
T ss_dssp CCTTCCEEEECCSHHHHHHHHHHHHTTCCCEEEESSSSCTTGGGSCTTSCEEESBCCHHHHHHCSEEEEC
T ss_pred CcCCCEEEEEeECHHHHHHHHHHHHCCCEEEEeeCCcCchhHHHHhhccceeecccchhhhccCCEEEEC
Confidence 578999999999999999999999999999999976532221111 2221 11 24567889999874
|
| >d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Fatty oxidation complex alpha subunit, middle domain species: Pseudomonas fragi [TaxId: 296]
Probab=97.75 E-value=2e-05 Score=73.74 Aligned_cols=114 Identities=18% Similarity=0.239 Sum_probs=79.7
Q ss_pred CeEEEEecChhHHHHHHHHHcCCCEEEEECCCCCh-hHHHH-----------cC-C------------cccCHHHHhccC
Q 006864 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPA-DKARA-----------VG-V------------ELVSFDQALATA 284 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~-----------~g-~------------~~~sl~ell~~a 284 (628)
|+|+|||.|.||+.+|..+...|++|..||+.... +.+.+ .+ . ...+..+.+.+|
T Consensus 5 ~~vaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a 84 (186)
T d1wdka3 5 KQAAVLGAGIMGGGIAYQSASKGTPILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRPTLSYGDFGNV 84 (186)
T ss_dssp SSEEEECCHHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEEESSSTTGGGC
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEECCHHHHhhhhhhhhhhHHhhhcccccchhhhhhhhceeeccccccccccc
Confidence 68999999999999999999999999999987421 11100 01 0 111222447899
Q ss_pred CEEEEcCCCCccccccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhC-CCeeEEEeeccC
Q 006864 285 DFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDS-GVVAQAALDVFT 347 (628)
Q Consensus 285 DvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~~vde~aL~~aL~~-g~i~ga~lDV~~ 347 (628)
|+|+=++|-+.+.+.-+-++.-+.++++++|.....+-.+ ..|.+.+.. .++ .++..|.
T Consensus 85 dlViEav~E~l~~K~~lf~~l~~~~~~~~IiaSnTS~l~i--~~la~~~~~p~r~--~g~Hf~n 144 (186)
T d1wdka3 85 DLVVEAVVENPKVKQAVLAEVENHVREDAILASNTSTISI--SLLAKALKRPENF--VGMHFFN 144 (186)
T ss_dssp SEEEECCCSCHHHHHHHHHHHHTTSCTTCEEEECCSSSCH--HHHGGGCSCGGGE--EEEECCS
T ss_pred ceeeeeecchHHHHHHHHHHHHhhcCCCeeEEeccccccH--HHHHHhccCchhe--Eeecccc
Confidence 9999999988887776667777778999999887766544 445565543 255 4444443
|
| >d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: UDP-glucose dehydrogenase (UDPGDH) species: Streptococcus pyogenes [TaxId: 1314]
Probab=97.73 E-value=0.0006 Score=63.36 Aligned_cols=133 Identities=14% Similarity=0.121 Sum_probs=87.9
Q ss_pred CeEEEEecChhHHHHHHHHHcCCCEEEEECCCCChhHHHHcCC--------------------cccCHHHHhccCCEEEE
Q 006864 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGV--------------------ELVSFDQALATADFISL 289 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~--------------------~~~sl~ell~~aDvV~l 289 (628)
++|+|||+|.+|..+|..+ +.|++|++||.....-.....|. ...+......++|++++
T Consensus 1 MkI~ViGlG~vGl~~a~~~-a~g~~V~g~Din~~~v~~l~~g~~p~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~ii~v 79 (196)
T d1dlja2 1 MKIAVAGSGYVGLSLGVLL-SLQNEVTIVDILPSKVDKINNGLSPIQDEYIEYYLKSKQLSIKATLDSKAAYKEAELVII 79 (196)
T ss_dssp CEEEEECCSHHHHHHHHHH-TTTSEEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEESCHHHHHHHCSEEEE
T ss_pred CEEEEECCChhHHHHHHHH-HCCCcEEEEECCHHHHHHHhhcccccchhhHHHHhhhhhhhhhccchhhhhhhccccccc
Confidence 5799999999999999877 57999999997632111111111 11255666789999999
Q ss_pred cCCCCccccc-ccc-------HHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhCCCeeEEEeeccCCCCCCCCC---ccc
Q 006864 290 HMPLNPTTSK-IFN-------DETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEEPPAKDS---KLV 358 (628)
Q Consensus 290 ~~Plt~~t~~-li~-------~~~l~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~ga~lDV~~~EP~~~~~---~L~ 358 (628)
++|...+... ..+ .+.+...+++.++|--+.-.+=..+.+..-+.+.+++ |.+|-+...+ .+.
T Consensus 80 ~vpt~~~~~~~~~~~~~v~~~~~~~~~~~~~~~iii~Stv~pgt~~~~~~~~~~~~~~------~~PE~i~~G~ai~d~~ 153 (196)
T d1dlja2 80 ATPTNYNSRINYFDTQHVETVIKEVLSVNSHATLIIKSTIPIGFITEMRQKFQTDRII------FSPEFLRESKALYDNL 153 (196)
T ss_dssp CCCCCEETTTTEECCHHHHHHHHHHHHHCSSCEEEECSCCCTTHHHHHHHHTTCSCEE------ECCCCCCTTSTTHHHH
T ss_pred cCCccccccCCCcceeEEeehhhhhhhcccceeEEeeeecCceeeeeeeeccchhhhc------cchhhcchhhhHhhcc
Confidence 9996654332 211 1223345778888888877777777788888777663 5677665444 345
Q ss_pred cCCcEEEcCCC
Q 006864 359 QHENVTVTPHL 369 (628)
Q Consensus 359 ~~~nvilTPHi 369 (628)
..|++|+--+-
T Consensus 154 ~p~riv~G~~~ 164 (196)
T d1dlja2 154 YPSRIIVSCEE 164 (196)
T ss_dssp SCSCEEEECCT
T ss_pred CCCEEEEeCCH
Confidence 66787765543
|
| >d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.72 E-value=3.1e-05 Score=71.73 Aligned_cols=96 Identities=20% Similarity=0.181 Sum_probs=67.1
Q ss_pred ccceeeecCCeEEEEecChh-HHHHHHHHHcCCCEEEEECCCCChhHHHHcCC-------------cccCHHHHhccCCE
Q 006864 221 KYVGVSLVGKTLAVMGFGKV-GSEVARRAKGLGMNVIAHDPYAPADKARAVGV-------------ELVSFDQALATADF 286 (628)
Q Consensus 221 ~~~g~~l~GktiGIIGlG~I-G~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~-------------~~~sl~ell~~aDv 286 (628)
...|.+++||++.|||-++| |+.+|..|...|..|...+........+...+ ....+++.+.+||+
T Consensus 21 ~~~g~~l~GK~vvVIGrS~iVG~Pla~lL~~~gaTVt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~~~~~aDI 100 (171)
T d1edza1 21 LPEGNRLYGKKCIVINRSEIVGRPLAALLANDGATVYSVDVNNIQKFTRGESLKLNKHHVEDLGEYSEDLLKKCSLDSDV 100 (171)
T ss_dssp SCTTCTTTTCEEEEECCCTTTHHHHHHHHHTTSCEEEEECSSEEEEEESCCCSSCCCCEEEEEEECCHHHHHHHHHHCSE
T ss_pred ccccCCCCCCEEEEECCccccHHHHHHHHHHCCCEEEEeccccccccccccceeeeeeccccccccchhHHhhccccCCE
Confidence 34578999999999999875 99999999999999998875421111000000 01127788889999
Q ss_pred EEEcCCCCccccccccHHHHhcCCCCcEEEEcCCCc
Q 006864 287 ISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGG 322 (628)
Q Consensus 287 V~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~ 322 (628)
|+.++|... ..+..+ +.|+|+++||++-..
T Consensus 101 vIsavG~p~---~~i~~d---~ik~GavvIDvGi~~ 130 (171)
T d1edza1 101 VITGVPSEN---YKFPTE---YIKEGAVCINFACTK 130 (171)
T ss_dssp EEECCCCTT---CCBCTT---TSCTTEEEEECSSSC
T ss_pred EEEccCCCc---cccChh---hcccCceEeeccccc
Confidence 999998432 113333 359999999998543
|
| >d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Ketopantoate reductase PanE species: Escherichia coli [TaxId: 562]
Probab=97.69 E-value=1.8e-05 Score=71.29 Aligned_cols=90 Identities=16% Similarity=0.140 Sum_probs=64.0
Q ss_pred CeEEEEecChhHHHHHHHHHcCCCEEEEECCCCChh-HHHHcCCc--------ccCHHHHhccCCEEEEcCCCCcccccc
Q 006864 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPAD-KARAVGVE--------LVSFDQALATADFISLHMPLNPTTSKI 300 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~-~a~~~g~~--------~~sl~ell~~aDvV~l~~Plt~~t~~l 300 (628)
++|+|||.|.||..+|..|...|++|..+++..... .....+.. ..+..+.+..+|+|+++++- .++...
T Consensus 1 MkI~IiGaG~iG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~iii~vka-~~~~~~ 79 (167)
T d1ks9a2 1 MKITVLGCGALGQLWLTALCKQGHEVQGWLRVPQPYCSVNLVETDGSIFNESLTANDPDFLATSDLLLVTLKA-WQVSDA 79 (167)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSEEEEEEECTTSCEEEEEEEESCHHHHHTCSEEEECSCG-GGHHHH
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCceEEEEcCHHHhhhhccccCCccccccccccchhhhhcccceEEEeecc-cchHHH
Confidence 589999999999999999999999999999875321 11111111 12456777899999999983 344433
Q ss_pred ccHHHHhcCCCCcEEEEcCCC
Q 006864 301 FNDETFAKMKKGVRIVNVARG 321 (628)
Q Consensus 301 i~~~~l~~mk~gailIN~aRg 321 (628)
+ +.....+++++.++.+.-|
T Consensus 80 ~-~~l~~~~~~~~~Iv~~qNG 99 (167)
T d1ks9a2 80 V-KSLASTLPVTTPILLIHNG 99 (167)
T ss_dssp H-HHHHTTSCTTSCEEEECSS
T ss_pred H-HhhccccCcccEEeeccCc
Confidence 2 3334457788999988765
|
| >d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=97.67 E-value=3.3e-05 Score=71.76 Aligned_cols=91 Identities=16% Similarity=0.261 Sum_probs=63.4
Q ss_pred CeEEEEecChhHHHHHHHHHcCCCEEEEECCCCChhHHHHc---------CC--------cccCHHHHhccCCEEEEcCC
Q 006864 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAV---------GV--------ELVSFDQALATADFISLHMP 292 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~---------g~--------~~~sl~ell~~aDvV~l~~P 292 (628)
++|+|||.|.+|.++|..|...|.+|..|.+....+..... +. ...+++++++.||+|++++|
T Consensus 1 MkI~ViGaG~~GtalA~~la~~g~~V~l~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ad~Ii~avp 80 (180)
T d1txga2 1 MIVSILGAGAMGSALSVPLVDNGNEVRIWGTEFDTEILKSISAGREHPRLGVKLNGVEIFWPEQLEKCLENAEVVLLGVS 80 (180)
T ss_dssp CEEEEESCCHHHHHHHHHHHHHCCEEEEECCGGGHHHHHHHHTTCCBTTTTBCCCSEEEECGGGHHHHHTTCSEEEECSC
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEEecccHHHHHHHhhhhhhhhhcchhccccccccccHHHHHhccchhhcccc
Confidence 58999999999999999999999999999875433322221 00 02368999999999999999
Q ss_pred CCccccccccHHHHhcCCCCcEEEEcCCCch
Q 006864 293 LNPTTSKIFNDETFAKMKKGVRIVNVARGGV 323 (628)
Q Consensus 293 lt~~t~~li~~~~l~~mk~gailIN~aRg~~ 323 (628)
. ...+..+ ++....+++ ..+|.++.|..
T Consensus 81 s-~~~~~~~-~~l~~~l~~-~~ii~~tkg~~ 108 (180)
T d1txga2 81 T-DGVLPVM-SRILPYLKD-QYIVLISKGLI 108 (180)
T ss_dssp G-GGHHHHH-HHHTTTCCS-CEEEECCCSEE
T ss_pred h-hhhHHHH-Hhhcccccc-ceecccccCcc
Confidence 3 3344443 234444555 46666776654
|
| >d2pc6a2 d.58.18.6 (A:1-77) Acetolactate synthase small subunit, IlvH {Nitrosomonas europaea [TaxId: 915]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: ACT-like family: IlvH-like domain: Acetolactate synthase small subunit, IlvH species: Nitrosomonas europaea [TaxId: 915]
Probab=97.60 E-value=2.5e-05 Score=62.82 Aligned_cols=69 Identities=17% Similarity=0.252 Sum_probs=57.6
Q ss_pred cEEEEeccCCCCchhhHHhhhhcCCccccceEEeeeecCccEEEEEEeCC--CCCHHHHHHHhcccCcccc
Q 006864 559 NLILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDE--EPNQDSLKEIGKVHFVARI 627 (628)
Q Consensus 559 ~~Llv~~~D~PGvIa~V~~iL~~~~INIa~m~v~R~~~gg~Al~~i~vD~--~~~~~~l~~L~~l~~v~~v 627 (628)
|++.+...|+||++++|++++...|+||.++.++..+..|.+-|.|.++. +.-+.+.++|.++.+|.+|
T Consensus 3 ~tisv~veN~pGvL~Ris~lF~rRg~NI~Sltv~~te~~~iSRmtivv~~~~~~i~qi~kQL~KlvdVi~V 73 (77)
T d2pc6a2 3 HIISLLMENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVTNGPDEIVEQITKQLNKLIEVVKL 73 (77)
T ss_dssp EEEEEEEECSTTHHHHHHHHHHHHTCCCCEEEEEECSSTTEEEEEEEEEECHHHHHHHHHHHHHSTTEEEE
T ss_pred EEEEEEEECCccHHHHHHHHHhccCcceEEEEEeccCCCCeEEEEEEEECCHHHHHHHHHHHhCCcCEEEE
Confidence 67778889999999999999999999999999999988888877777654 3333577888888887765
|
| >d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.57 E-value=0.0001 Score=68.01 Aligned_cols=85 Identities=19% Similarity=0.293 Sum_probs=67.2
Q ss_pred ceeeecCCeEEEEecCh-hHHHHHHHHHcCCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEcCCCCccccccc
Q 006864 223 VGVSLVGKTLAVMGFGK-VGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIF 301 (628)
Q Consensus 223 ~g~~l~GktiGIIGlG~-IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~sl~ell~~aDvV~l~~Plt~~t~~li 301 (628)
.+.+++||++.|||-+. +|+.+|..|...|+.|..++.... ++.+.+++||+|+.+++. .+++
T Consensus 33 ~~i~l~Gk~vvVIGrS~iVGrPLa~lL~~~gatVt~~~~~t~------------~l~~~~~~aDivi~a~G~----~~~i 96 (170)
T d1a4ia1 33 TGVPIAGRHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSKTA------------HLDEEVNKGDILVVATGQ----PEMV 96 (170)
T ss_dssp TTCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCS------------SHHHHHTTCSEEEECCCC----TTCB
T ss_pred hCcccccceEEEEecCCccchHHHHHHHhccCceEEEecccc------------cHHHHHhhccchhhcccc----cccc
Confidence 47789999999999987 899999999999999999986532 356678899999999873 3556
Q ss_pred cHHHHhcCCCCcEEEEcCCCchhcH
Q 006864 302 NDETFAKMKKGVRIVNVARGGVIDE 326 (628)
Q Consensus 302 ~~~~l~~mk~gailIN~aRg~~vde 326 (628)
..+ +.|+|+++||++--.+.|.
T Consensus 97 ~~~---~vk~g~iviDvgi~~~~~~ 118 (170)
T d1a4ia1 97 KGE---WIKPGAIVIDCGINYVPDD 118 (170)
T ss_dssp CGG---GSCTTCEEEECCCBC----
T ss_pred ccc---cccCCCeEeccCccccccc
Confidence 654 4699999999985554443
|
| >d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Escherichia coli [TaxId: 562]
Probab=97.55 E-value=7.7e-05 Score=68.54 Aligned_cols=79 Identities=14% Similarity=0.267 Sum_probs=66.2
Q ss_pred ceeeecCCeEEEEecCh-hHHHHHHHHHcCCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEcCCCCccccccc
Q 006864 223 VGVSLVGKTLAVMGFGK-VGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIF 301 (628)
Q Consensus 223 ~g~~l~GktiGIIGlG~-IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~sl~ell~~aDvV~l~~Plt~~t~~li 301 (628)
.+.++.||++.|||-+. +|+.+|..|...|+.|...+.+. .++.+.+++||+|+.++.. .+++
T Consensus 31 y~i~l~GK~v~VIGrS~~VG~Pla~lL~~~gatVt~~h~~t------------~~l~~~~~~ADivI~a~G~----p~~i 94 (166)
T d1b0aa1 31 YNIDTFGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFT------------KNLRHHVENADLLIVAVGK----PGFI 94 (166)
T ss_dssp TTCCCTTCEEEEECCCTTTHHHHHHHHHTTTCEEEEECSSC------------SCHHHHHHHCSEEEECSCC----TTCB
T ss_pred cCcccccceEEEEeccccccHHHHHHHHHhhcccccccccc------------chhHHHHhhhhHhhhhccC----cccc
Confidence 46789999999999998 89999999999999999987653 2467778999999999872 4667
Q ss_pred cHHHHhcCCCCcEEEEcCC
Q 006864 302 NDETFAKMKKGVRIVNVAR 320 (628)
Q Consensus 302 ~~~~l~~mk~gailIN~aR 320 (628)
..+ ++|+|+++||++-
T Consensus 95 ~~~---~vk~g~vvIDvGi 110 (166)
T d1b0aa1 95 PGD---WIKEGAIVIDVGI 110 (166)
T ss_dssp CTT---TSCTTCEEEECCC
T ss_pred ccc---ccCCCcEEEecCc
Confidence 655 4599999999973
|
| >d2f1fa1 d.58.18.6 (A:2-77) Acetolactate synthase small subunit, IlvH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: ACT-like family: IlvH-like domain: Acetolactate synthase small subunit, IlvH species: Escherichia coli [TaxId: 562]
Probab=97.54 E-value=5.2e-05 Score=60.73 Aligned_cols=69 Identities=16% Similarity=0.199 Sum_probs=55.3
Q ss_pred cEEEEeccCCCCchhhHHhhhhcCCccccceEEeeeecCccEEEEEEeCCC--CCHHHHHHHhcccCcccc
Q 006864 559 NLILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDEE--PNQDSLKEIGKVHFVARI 627 (628)
Q Consensus 559 ~~Llv~~~D~PGvIa~V~~iL~~~~INIa~m~v~R~~~gg~Al~~i~vD~~--~~~~~l~~L~~l~~v~~v 627 (628)
|+|-+...|+||++++|+.++...++||.++.++..+..+.+-|.|-+... .-+.+.++|.++.+|.+|
T Consensus 2 htlsv~v~N~~GVL~RisglF~rRg~NI~Sl~v~~te~~~iSR~tivv~~~~~~i~qi~kQL~KlidV~~V 72 (76)
T d2f1fa1 2 RILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTVGDEKVLEQIEKQLHKLVDVLRV 72 (76)
T ss_dssp EEEEEEEECCTTHHHHHHHHHHTTTCCCSEEEEEECSCSSEEEEEEEEESCHHHHHHHHHHHHHSTTEEEE
T ss_pred EEEEEEEECCCcHHHHHHHHHHhcCcceEEEEEcccCCCCeeEEEEEEECCHHHHHHHHHHHhCCCCEEEE
Confidence 567777889999999999999999999999999988887777666665442 222467778888888765
|
| >d2fgca2 d.58.18.6 (A:27-104) Acetolactate synthase small subunit, IlvH {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: ACT-like family: IlvH-like domain: Acetolactate synthase small subunit, IlvH species: Thermotoga maritima [TaxId: 2336]
Probab=97.53 E-value=7e-05 Score=60.25 Aligned_cols=70 Identities=20% Similarity=0.311 Sum_probs=57.4
Q ss_pred CcEEEEeccCCCCchhhHHhhhhcCCccccceEEeeeecCccEEEEEEeC--CCCCHHHHHHHhcccCcccc
Q 006864 558 GNLILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVD--EEPNQDSLKEIGKVHFVARI 627 (628)
Q Consensus 558 ~~~Llv~~~D~PGvIa~V~~iL~~~~INIa~m~v~R~~~gg~Al~~i~vD--~~~~~~~l~~L~~l~~v~~v 627 (628)
.|+|-+...|+||++++|++++...|+||.++.++..+..|..=|.|-++ +..-+.+.++|.++.+|.+|
T Consensus 3 ~~tisvlv~n~pGvL~Ri~~lF~rRg~NI~SL~v~~te~~~iSR~tivv~g~~~~i~qi~kQl~KlidV~~V 74 (78)
T d2fgca2 3 EHLVSMLVHNKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMVKGDDKTIEQIEKQAYKLVEVVKV 74 (78)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHTTTCEEEEEEEEECSSTTEEEEEEEEEECTTHHHHHHHHHTTSTTEEEE
T ss_pred eEEEEEEEeCCCcHHHHHHHHHhhCCcceEEEEEeecCCCCeEEEEEEEEcCHHHHHHHHHHHhCCcCEEEE
Confidence 36777788899999999999999999999999999988888776655554 44344678888888888765
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=97.53 E-value=2.8e-05 Score=68.12 Aligned_cols=67 Identities=16% Similarity=0.319 Sum_probs=50.2
Q ss_pred CeEEEEecChhHHHHHHHHHcCCCEEEEECCCCCh-hHHHHcCCcc--------cCHHHH-hccCCEEEEcCCCCcc
Q 006864 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPA-DKARAVGVEL--------VSFDQA-LATADFISLHMPLNPT 296 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~~g~~~--------~sl~el-l~~aDvV~l~~Plt~~ 296 (628)
|++.|+|+|++|+.+|+.|...|.+|+++|..... +.....+... ..|+++ +.+||.+++++|-..+
T Consensus 1 k~~iIiG~G~~G~~la~~L~~~g~~vvvid~d~~~~~~~~~~~~~~~~gd~~~~~~l~~a~i~~a~~vi~~~~~~~~ 77 (134)
T d2hmva1 1 KQFAVIGLGRFGGSIVKELHRMGHEVLAVDINEEKVNAYASYATHAVIANATEENELLSLGIRNFEYVIVAIGANIQ 77 (134)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCCEEEESCHHHHHHTTTTCSEEEECCTTCTTHHHHHTGGGCSEEEECCCSCHH
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEecCcHHHHHHHHHhCCcceeeecccchhhhccCCccccEEEEEcCchHH
Confidence 67899999999999999999999999999986422 2233334321 125555 7899999999985544
|
| >d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Trypanosome (Leishmania mexicana) [TaxId: 5665]
Probab=97.30 E-value=3.8e-05 Score=72.08 Aligned_cols=91 Identities=18% Similarity=0.230 Sum_probs=62.2
Q ss_pred CeEEEEecChhHHHHHHHHHcCCCEEEEECCCCChh-HHHHc--------CCc------c-cCHHHHhccCCEEEEcCCC
Q 006864 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPAD-KARAV--------GVE------L-VSFDQALATADFISLHMPL 293 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~-~a~~~--------g~~------~-~sl~ell~~aDvV~l~~Pl 293 (628)
++|+|||.|..|.++|..|...|.+|..|++..... ..... ++. . .+++++++.||+|++++|
T Consensus 8 ~KI~ViGaG~wGtAlA~~La~~g~~V~l~~r~~~~~~~i~~~~~n~~yl~~~~l~~~i~~t~~l~~a~~~ad~iiiavP- 86 (189)
T d1n1ea2 8 NKAVVFGSGAFGTALAMVLSKKCREVCVWHMNEEEVRLVNEKRENVLFLKGVQLASNITFTSDVEKAYNGAEIILFVIP- 86 (189)
T ss_dssp EEEEEECCSHHHHHHHHHHHTTEEEEEEECSCHHHHHHHHHHTBCTTTSTTCBCCTTEEEESCHHHHHTTCSCEEECSC-
T ss_pred ceEEEECCCHHHHHHHHHHHHcCCeEEEEEecHHHHHHHhhcccccccccccccccccccchhhhhccCCCCEEEEcCc-
Confidence 579999999999999999999999999999753211 01110 121 1 268999999999999999
Q ss_pred CccccccccHH--H--HhcCCCCcEEEEcCCC
Q 006864 294 NPTTSKIFNDE--T--FAKMKKGVRIVNVARG 321 (628)
Q Consensus 294 t~~t~~li~~~--~--l~~mk~gailIN~aRg 321 (628)
+...+..+..- . ....+++..+++++-|
T Consensus 87 s~~~~~~~~~~~~~~~~~~~~~~~~ii~~tKG 118 (189)
T d1n1ea2 87 TQFLRGFFEKSGGNLIAYAKEKQVPVLVCTKG 118 (189)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHTCCEEECCCS
T ss_pred HHHHHHHHHHHHhhhhhhhccCCcEEEEEECC
Confidence 32333333221 0 1123567789998766
|
| >d2f06a1 d.58.18.11 (A:71-141) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: ACT-like family: BT0572-like domain: Hypothetical protein BT0572 species: Bacteroides thetaiotaomicron [TaxId: 818]
Probab=97.29 E-value=0.00017 Score=56.90 Aligned_cols=56 Identities=16% Similarity=0.201 Sum_probs=47.5
Q ss_pred EEEeccCCCCchhhHHhhhhcCCccccceEEeeeecCccEEEEEEeCCCCCHHHHHHHhc
Q 006864 561 ILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDEEPNQDSLKEIGK 620 (628)
Q Consensus 561 Llv~~~D~PGvIa~V~~iL~~~~INIa~m~v~R~~~gg~Al~~i~vD~~~~~~~l~~L~~ 620 (628)
+-+.-+|+||.+++++++|+++||||.+|-.+.. ++.+++++.+|. ++.+.+.|++
T Consensus 2 iaV~v~d~pG~L~~v~~~L~~~~InI~~~y~~~~--~~~~~~vl~vdd--~~~a~~~L~~ 57 (71)
T d2f06a1 2 VGISCPNVPGALAKVLGFLSAEGVFIEYMYSFAN--NNVANVVIRPSN--MDKCIEVLKE 57 (71)
T ss_dssp EEEEEESSTTHHHHHHHHHHHTTCCEEEEEEEEE--TTEEEEEEEESC--HHHHHHHHHH
T ss_pred EEEEecCCccHHHHHHHHHHHCCCCEEEEEEEcC--CCcEEEEEEECC--HHHHHHHHHH
Confidence 4467799999999999999999999999999854 478999999985 4667777765
|
| >d1y7pa2 d.58.18.12 (A:2-78) Hypothetical protein AF1403, N-terminal domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: ACT-like family: AF1403 N-terminal domain-like domain: Hypothetical protein AF1403, N-terminal domain species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=97.18 E-value=0.00028 Score=56.51 Aligned_cols=67 Identities=13% Similarity=0.203 Sum_probs=46.9
Q ss_pred EEEeccCCCCchhhHHhhhhcCCccccceEEeeeecC-ccEEEEEEe--CCCCCHHHHHHHhcccCcccc
Q 006864 561 ILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRR-NHGIMAIGV--DEEPNQDSLKEIGKVHFVARI 627 (628)
Q Consensus 561 Llv~~~D~PGvIa~V~~iL~~~~INIa~m~v~R~~~g-g~Al~~i~v--D~~~~~~~l~~L~~l~~v~~v 627 (628)
|-+...|+||+++.|+++++++++||-.++..-...| ....+.+++ .+..-+.++++|+++|+|.+|
T Consensus 4 i~i~~~Dr~GlL~di~~~ia~~~~NI~~i~~~~~~~g~~~~~~~i~v~~~~~~l~~ll~kL~~l~~V~~V 73 (77)
T d1y7pa2 4 LRIIAENKIGVLRDLTTIIAEEGGNITFAQTFLIKHGEHEGKALIYFEIEGGDFEKILERVKTFDYIIEI 73 (77)
T ss_dssp EEEEEECCTTHHHHHHHHCC----CEEEEEEEECCSSTTTTEEEEEEEECSSCHHHHHHHHHTCTTEEEE
T ss_pred EEEEEecCCChHHHHHHHHHHcCCCeEEEEeeccCCCeEEEEEEEEEEcCcccHHHHHHHHHcCCCeeEE
Confidence 4566789999999999999999999999987543332 233455555 332346899999999999886
|
| >d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Clostridium symbiosum [TaxId: 1512]
Probab=97.11 E-value=0.00057 Score=66.88 Aligned_cols=109 Identities=26% Similarity=0.335 Sum_probs=71.5
Q ss_pred eeeecCCeEEEEecChhHHHHHHHHHcCCCEEEE--------ECCCC-ChhH-------------------HHHcCCccc
Q 006864 224 GVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIA--------HDPYA-PADK-------------------ARAVGVELV 275 (628)
Q Consensus 224 g~~l~GktiGIIGlG~IG~~vA~~l~~~G~~V~~--------~d~~~-~~~~-------------------a~~~g~~~~ 275 (628)
+.+|.|||+.|=|+|++|+.+|+.|...|++|++ |||.- +.+. ....+.+..
T Consensus 31 ~~~l~g~~v~IQGfGnVG~~~a~~L~e~GakvvavsD~~G~i~~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (255)
T d1bgva1 31 NDTLVGKTVALAGFGNVAWGAAKKLAELGAKAVTLSGPDGYIYDPEGITTEEKINYMLEMRASGRNKVQDYADKFGVQFF 110 (255)
T ss_dssp TCCSTTCEEEECCSSHHHHHHHHHHHHHTCEEEEEEETTEEEECTTCSCSHHHHHHHHHHHHHCCCCTHHHHHHHTCEEE
T ss_pred CCCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCceEecCCCCCHHHHHHHHHHHhhhcCcchhhhhhhcCceee
Confidence 4578999999999999999999999999999986 44432 1111 111223333
Q ss_pred CHHHHh-ccCCEEEEcCCCCccccccccHHHHhcCCC-Cc-EEEEcCCCchhcHHHHHHHHhCCCe
Q 006864 276 SFDQAL-ATADFISLHMPLNPTTSKIFNDETFAKMKK-GV-RIVNVARGGVIDEEALVRALDSGVV 338 (628)
Q Consensus 276 sl~ell-~~aDvV~l~~Plt~~t~~li~~~~l~~mk~-ga-ilIN~aRg~~vde~aL~~aL~~g~i 338 (628)
+-++++ ..||+++-|. +.+.|+.+..++++. ++ +|+--|.+.+-++. ....|+++.|
T Consensus 111 ~~~~~~~~~~DiliPcA-----~~~~I~~~~a~~l~a~~ck~I~EgAN~p~t~ea-~~~ll~~~gI 170 (255)
T d1bgva1 111 PGEKPWGQKVDIIMPCA-----TQNDVDLEQAKKIVANNVKYYIEVANMPTTNEA-LRFLMQQPNM 170 (255)
T ss_dssp ETCCGGGSCCSEEECCS-----CTTCBCHHHHHHHHHTTCCEEECCSSSCBCHHH-HHHHHHCTTC
T ss_pred chhhcccccccEEeecc-----ccccccHHHHHhhhhcCceEEecCCCCCcchHH-HHHHHHhcCC
Confidence 444444 3699987553 567788887777754 34 66666766665553 3334565444
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.05 E-value=0.00032 Score=63.74 Aligned_cols=89 Identities=22% Similarity=0.277 Sum_probs=64.8
Q ss_pred cCCeEEEEecChhHHHHHHHHHcCCCEEEEECCCC-ChhHHHHcCCccc-------C-HHHHhccCCEEEEcCCCCcccc
Q 006864 228 VGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA-PADKARAVGVELV-------S-FDQALATADFISLHMPLNPTTS 298 (628)
Q Consensus 228 ~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~g~~~~-------s-l~ell~~aDvV~l~~Plt~~t~ 298 (628)
.|.++.|+|.|.+|...++.++.+|++|++.|++. ..+.++++|+..+ + .+......|+++.++.....
T Consensus 27 ~g~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~~k~~~a~~lGa~~~i~~~~~~~~~~~~~~~~d~vi~~~~~~~~-- 104 (168)
T d1piwa2 27 PGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAMKMGADHYIATLEEGDWGEKYFDTFDLIVVCASSLTD-- 104 (168)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHHTCSEEEEGGGTSCHHHHSCSCEEEEEECCSCSTT--
T ss_pred CCCEEEEECCCCcchhHHHHhhhccccccccccchhHHHHhhccCCcEEeeccchHHHHHhhhcccceEEEEecCCcc--
Confidence 47899999999999999999999999999999876 4567788886421 1 23444567888887653321
Q ss_pred ccccHHHHhcCCCCcEEEEcC
Q 006864 299 KIFNDETFAKMKKGVRIVNVA 319 (628)
Q Consensus 299 ~li~~~~l~~mk~gailIN~a 319 (628)
..-...++.++++..++.++
T Consensus 105 -~~~~~~~~~l~~~G~iv~~G 124 (168)
T d1piwa2 105 -IDFNIMPKAMKVGGRIVSIS 124 (168)
T ss_dssp -CCTTTGGGGEEEEEEEEECC
T ss_pred -chHHHHHHHhhccceEEEec
Confidence 11134566788888888875
|
| >d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Pyrobaculum islandicum [TaxId: 2277]
Probab=96.97 E-value=0.0016 Score=63.02 Aligned_cols=111 Identities=24% Similarity=0.266 Sum_probs=76.4
Q ss_pred eeecCCeEEEEecChhHHHHHHHHHcCCCEEEEECCC--------C-ChhHH----------------HHcCCccc-CHH
Q 006864 225 VSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPY--------A-PADKA----------------RAVGVELV-SFD 278 (628)
Q Consensus 225 ~~l~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~--------~-~~~~a----------------~~~g~~~~-sl~ 278 (628)
.+|.|||+.|=|+|++|+.+|+.|...|++|++.+.. - +.+.. ...+.+.+ +.+
T Consensus 27 ~~l~g~~v~IqGfGnVG~~~a~~L~~~Gakvv~vsD~~g~i~~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (242)
T d1v9la1 27 GGIEGKTVAIQGMGNVGRWTAYWLEKMGAKVIAVSDINGVAYRKEGLNVELIQKNKGLTGPALVELFTTKDNAEFVKNPD 106 (242)
T ss_dssp SCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEEECSSCEEECTTCCCTHHHHHTTTSCHHHHHHHHHHTSCCCCCSSTT
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEeecccccccccccccHHHHHHHhhcchhhHHHhhhhccCceEeeCcc
Confidence 4699999999999999999999999999999875422 1 11111 11122222 345
Q ss_pred HHhc-cCCEEEEcCCCCccccccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhCCCeeEEEee
Q 006864 279 QALA-TADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALD 344 (628)
Q Consensus 279 ell~-~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~ga~lD 344 (628)
+++. .||+++-|. ..+.|+.+...+|+- .+|+-.|-+.+ ..++- +.|.+..|. ..=|
T Consensus 107 ~i~~~~~DIliPcA-----~~~~I~~~~a~~i~a-k~IvegAN~p~-t~~a~-~~L~~rgI~-~~PD 164 (242)
T d1v9la1 107 AIFKLDVDIFVPAA-----IENVIRGDNAGLVKA-RLVVEGANGPT-TPEAE-RILYERGVV-VVPD 164 (242)
T ss_dssp GGGGCCCSEEEECS-----CSSCBCTTTTTTCCC-SEEECCSSSCB-CHHHH-HHHHTTTCE-EECH
T ss_pred hhccccccEEeecc-----hhccccHHHHHhccc-CEEEecCCCCC-ChhHH-HHHHhCCeE-EeCc
Confidence 5665 799999887 366788888888864 57778888886 55553 667666553 4444
|
| >d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Virulence factor MviM species: Escherichia coli [TaxId: 562]
Probab=96.96 E-value=0.00068 Score=61.20 Aligned_cols=63 Identities=13% Similarity=0.194 Sum_probs=47.8
Q ss_pred eEEEEecChhHHH-HHHHHHcC-CCEEEE-ECCCCCh--hHHHHcCCccc-CHHHHhccCCEEEEcCCC
Q 006864 231 TLAVMGFGKVGSE-VARRAKGL-GMNVIA-HDPYAPA--DKARAVGVELV-SFDQALATADFISLHMPL 293 (628)
Q Consensus 231 tiGIIGlG~IG~~-vA~~l~~~-G~~V~~-~d~~~~~--~~a~~~g~~~~-sl~ell~~aDvV~l~~Pl 293 (628)
++||||+|.+|+. ....++.. ++++++ +|+.... ..+...++... ++++++++.|+|++++|-
T Consensus 3 ri~iIG~G~~g~~~~~~~l~~~~~~~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~l~~~~D~V~I~tp~ 71 (164)
T d1tlta1 3 RIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSPTRAKALPICESWRIPYADSLSSLAASCDAVFVHSST 71 (164)
T ss_dssp EEEEECCSTHHHHTHHHHHHSCSSEEEEEEECSSCTTHHHHHHHHTCCBCSSHHHHHTTCSEEEECSCT
T ss_pred EEEEEcCCHHHHHHHHHHHHhCCCcEEEEEEechhHhhhhhhhcccccccccchhhhhhcccccccccc
Confidence 7999999999986 46667665 678764 6877532 33455676654 789999999999999993
|
| >d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Saccharopine reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=96.93 E-value=0.00048 Score=61.85 Aligned_cols=87 Identities=15% Similarity=0.171 Sum_probs=58.1
Q ss_pred cCCeEEEEecChhHHHHHHHHHcCCCEEEEECCCCChhHH--HHcCCc---------ccCHHHHhccCCEEEEcCCCCcc
Q 006864 228 VGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKA--RAVGVE---------LVSFDQALATADFISLHMPLNPT 296 (628)
Q Consensus 228 ~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a--~~~g~~---------~~sl~ell~~aDvV~l~~Plt~~ 296 (628)
.+|+|.|||.|.||+.+|+.|..-|.+|+++|+....... ...+.. ...+++.+...|+++.++|....
T Consensus 1 ~~K~IliiGaG~~G~~~a~~L~~~g~~V~v~dr~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~~~ 80 (182)
T d1e5qa1 1 ATKSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLESAKKLSAGVQHSTPISLDVNDDAALDAEVAKHDLVISLIPYTFH 80 (182)
T ss_dssp CCCEEEEECCSTTHHHHHHHHHTTTCEEEEEESCHHHHHHHHTTCTTEEEEECCTTCHHHHHHHHTTSSEEEECSCGGGH
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEECChHHHHHHHhcccccccccccccchhhhHhhhhccceeEeeccchhh
Confidence 4799999999999999999999999999999997532222 112211 11356778888999888874321
Q ss_pred ccccccHHHHhcCCCCcEEEEcC
Q 006864 297 TSKIFNDETFAKMKKGVRIVNVA 319 (628)
Q Consensus 297 t~~li~~~~l~~mk~gailIN~a 319 (628)
. ......++.+..+++.+
T Consensus 81 --~---~~~~~~~~~~~~~~~~~ 98 (182)
T d1e5qa1 81 --A---TVIKSAIRQKKHVVTTS 98 (182)
T ss_dssp --H---HHHHHHHHHTCEEECSS
T ss_pred --h---HHHHHHHhhccceeecc
Confidence 1 11122234556666665
|
| >d1b26a1 c.2.1.7 (A:179-412) Glutamate dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=96.91 E-value=0.0017 Score=62.66 Aligned_cols=113 Identities=23% Similarity=0.288 Sum_probs=79.3
Q ss_pred eeeecCCeEEEEecChhHHHHHHHH-HcCCCEEEEEC--------CCC-ChhHH----HH-------cCCcccCHHHHhc
Q 006864 224 GVSLVGKTLAVMGFGKVGSEVARRA-KGLGMNVIAHD--------PYA-PADKA----RA-------VGVELVSFDQALA 282 (628)
Q Consensus 224 g~~l~GktiGIIGlG~IG~~vA~~l-~~~G~~V~~~d--------~~~-~~~~a----~~-------~g~~~~sl~ell~ 282 (628)
+.++.|+|+.|=|+|++|+.+|+.| +.+|++|++.+ +.- +.... .. .+.+..+.++++.
T Consensus 26 ~~~l~g~~vaIqG~GnVG~~~a~~L~~e~Ga~vv~vsd~~G~i~~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (234)
T d1b26a1 26 GIDPKKATVAVQGFGNVGQFAALLISQELGSKVVAVSDSRGGIYNPEGFDVEELIRYKKEHGTVVTYPKGERITNEELLE 105 (234)
T ss_dssp TCCTTTCEEEEECCSHHHHHHHHHHHHHHCCEEEEEEETTEEEECTTCCCHHHHHHHHHHSSCSTTCSSCEEECHHHHHT
T ss_pred CCCcCCCEEEEECCCHHHHHHHHHHHHhcCCceEEeecCCCcEEeccccchHHHHHHHHhhcceeccccceeeccccccc
Confidence 5578999999999999999999999 57899998753 321 21111 11 1223457788887
Q ss_pred -cCCEEEEcCCCCccccccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhCCCeeEEEeec
Q 006864 283 -TADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDV 345 (628)
Q Consensus 283 -~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~ga~lDV 345 (628)
.||+++-|. ..+.|+.+...+++- .+|+-.+-+.+-. ++ .+.|.+..|. ..-|+
T Consensus 106 ~~~DI~~PcA-----~~~~I~~~~a~~l~~-~~I~e~AN~p~t~-~a-~~~L~~rgI~-~~PD~ 160 (234)
T d1b26a1 106 LDVDILVPAA-----LEGAIHAGNAERIKA-KAVVEGANGPTTP-EA-DEILSRRGIL-VVPDI 160 (234)
T ss_dssp SCCSEEEECS-----CTTCBCHHHHTTCCC-SEEECCSSSCBCH-HH-HHHHHHTTCE-EECHH
T ss_pred cccceeecch-----hcccccHHHHHHhhh-ceEeecCCCCCCH-HH-HHHHHHCCeE-EechH
Confidence 899998775 467899999999985 4788888888644 44 3556555442 44453
|
| >d1gtma1 c.2.1.7 (A:181-419) Glutamate dehydrogenase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=96.91 E-value=0.0025 Score=61.52 Aligned_cols=105 Identities=26% Similarity=0.386 Sum_probs=73.6
Q ss_pred eecCCeEEEEecChhHHHHHHHHH-cCCCEEEEE-CCCC--------ChhHH----HH-------cCCcccCHHHHhc-c
Q 006864 226 SLVGKTLAVMGFGKVGSEVARRAK-GLGMNVIAH-DPYA--------PADKA----RA-------VGVELVSFDQALA-T 283 (628)
Q Consensus 226 ~l~GktiGIIGlG~IG~~vA~~l~-~~G~~V~~~-d~~~--------~~~~a----~~-------~g~~~~sl~ell~-~ 283 (628)
.|.|||+.|-|+|++|+.+|+.|. .+|++|++. |... +.+.. .. .+.+.++.++++. .
T Consensus 29 ~l~g~~v~IqGfGnVG~~~a~~L~~~~G~kvv~vsD~~g~i~~~~G~d~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 108 (239)
T d1gtma1 29 TLKGKTIAIQGYGNAGYYLAKIMSEDFGMKVVAVSDSKGGIYNPDGLNADEVLKWKNEHGSVKDFPGATNITNEELLELE 108 (239)
T ss_dssp CSTTCEEEEECCSHHHHHHHHHHHHTTCCEEEEEECSSCEEEEEEEECHHHHHHHHHHHSSSTTCTTSEEECHHHHHHSC
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHhcCcceeeccccccceecCCcCCHHHHHHHHHhccccccCCCCeeeccccccccc
Confidence 489999999999999999999885 689999875 4321 11111 01 1234557777775 7
Q ss_pred CCEEEEcCCCCccccccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhCCCe
Q 006864 284 ADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVV 338 (628)
Q Consensus 284 aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~~vde~aL~~aL~~g~i 338 (628)
||+++-|. +.+.|+.+..++++- .+|+-.+-+.+-. ++ .+.|.+..|
T Consensus 109 ~DIl~PcA-----~~~~I~~~~a~~i~a-k~I~e~AN~p~t~-ea-~~~L~~rgI 155 (239)
T d1gtma1 109 VDVLAPAA-----IEEVITKKNADNIKA-KIVAEVANGPVTP-EA-DEILFEKGI 155 (239)
T ss_dssp CSEEEECS-----CSCCBCTTGGGGCCC-SEEECCSSSCBCH-HH-HHHHHHTTC
T ss_pred ccEEeecc-----ccccccHHHHHhccc-cEEEecCCCCCCH-HH-HHHHHHCCC
Confidence 99998876 367788888888864 4778888888754 44 355655544
|
| >d2f06a2 d.58.18.11 (A:1-70) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: ACT-like family: BT0572-like domain: Hypothetical protein BT0572 species: Bacteroides thetaiotaomicron [TaxId: 818]
Probab=96.86 E-value=0.00083 Score=52.68 Aligned_cols=59 Identities=17% Similarity=0.322 Sum_probs=48.4
Q ss_pred EEEEeccCCCCchhhHHhhhhcCCccccceEEeeeecCccEEEEEEeCCCCCHHHHHHHhccc
Q 006864 560 LILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDEEPNQDSLKEIGKVH 622 (628)
Q Consensus 560 ~Llv~~~D~PGvIa~V~~iL~~~~INIa~m~v~R~~~gg~Al~~i~vD~~~~~~~l~~L~~l~ 622 (628)
.|-+.-.|+||.+++|+++|+++||||..+.++.. .+.++..+-+|+ |+++.+.|++..
T Consensus 5 QisV~~eNkpG~L~~v~~~~~~~~inI~sl~v~~t--~~~~i~Riiv~~--~e~a~~~L~~~g 63 (70)
T d2f06a2 5 QLSIFLENKSGRLTEVTEVLAKENINLSALCIAEN--ADFGILRGIVSD--PDKAYKALKDNH 63 (70)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHTTCCEEEEEEEEC--SSCEEEEEEESC--HHHHHHHHHHTT
T ss_pred EEEEEEeCCCcHHHHHHHHHHHCCCCEEEEEEeec--CCCCEEEEEECC--hHHHHHHHHHCC
Confidence 35566789999999999999999999999999854 457888888875 578888887643
|
| >d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.86 E-value=0.00072 Score=60.60 Aligned_cols=92 Identities=17% Similarity=0.146 Sum_probs=59.0
Q ss_pred cCCeEEEEecChhHHHHHHHHHcCCC--EEEEECCCCChhH--HHHc----C-----Ccc-cCHHHHhccCCEEEEcCCC
Q 006864 228 VGKTLAVMGFGKVGSEVARRAKGLGM--NVIAHDPYAPADK--ARAV----G-----VEL-VSFDQALATADFISLHMPL 293 (628)
Q Consensus 228 ~GktiGIIGlG~IG~~vA~~l~~~G~--~V~~~d~~~~~~~--a~~~----g-----~~~-~sl~ell~~aDvV~l~~Pl 293 (628)
.+++|+|||.|.+|+.+|..+...|. ++..||....... +.++ . ... ..-.+.++.||+|+++.-.
T Consensus 5 ~~~KI~IiGaG~vG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~~~~~d~~~l~daDvvvitag~ 84 (148)
T d1ldna1 5 GGARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWHGDYDDCRDADLVVICAGA 84 (148)
T ss_dssp TSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEECCGGGTTTCSEEEECCSC
T ss_pred CCCeEEEECcCHHHHHHHHHHHhcCCCceEEEEeeccccccchhccHhhCccccCCCeEEEECCHHHhccceeEEEeccc
Confidence 47899999999999999999986664 8999997643211 1111 1 111 1334778999999997654
Q ss_pred Ccc---ccc-cc--cH-------HHHhcCCCCcEEEEcC
Q 006864 294 NPT---TSK-IF--ND-------ETFAKMKKGVRIVNVA 319 (628)
Q Consensus 294 t~~---t~~-li--~~-------~~l~~mk~gailIN~a 319 (628)
... ++. ++ |. +.+.+..|.+++++++
T Consensus 85 ~~~~~~~R~dl~~~N~~i~~~i~~~i~~~~p~a~~ivvt 123 (148)
T d1ldna1 85 NQKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVAT 123 (148)
T ss_dssp CCCTTTCSGGGHHHHHHHHHHHHHHHHHHTCCSEEEECS
T ss_pred ccccCcchhHHHHHHHHHHHHHHHHHHhhCCCceEEEec
Confidence 321 111 11 11 2344556788999985
|
| >d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Escherichia coli [TaxId: 562]
Probab=96.86 E-value=0.00077 Score=61.47 Aligned_cols=96 Identities=14% Similarity=0.122 Sum_probs=64.4
Q ss_pred eeeecCCeEEEEecChhHHHHHHHHHcCCCEEEEECCCCChhH--HHHc---C-CcccCHHHH-hccCCEEEEcCCCCcc
Q 006864 224 GVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADK--ARAV---G-VELVSFDQA-LATADFISLHMPLNPT 296 (628)
Q Consensus 224 g~~l~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~--a~~~---g-~~~~sl~el-l~~aDvV~l~~Plt~~ 296 (628)
+..+.||++.|+|.|..+++++..|...|.+|..++|...... +... + +...++++. ..++|+|+.++|+.-.
T Consensus 13 ~~~~~~k~vlIlGaGGaarai~~al~~~g~~i~I~nRt~~ka~~l~~~~~~~~~~~~~~~~~~~~~~~dliIN~Tp~G~~ 92 (170)
T d1nyta1 13 SFIRPGLRILLIGAGGASRGVLLPLLSLDCAVTITNRTVSRAEELAKLFAHTGSIQALSMDELEGHEFDLIINATSSGIS 92 (170)
T ss_dssp TCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHTGGGSSEEECCSGGGTTCCCSEEEECCSCGGG
T ss_pred CCCCCCCEEEEECCcHHHHHHHHHhcccceEEEeccchHHHHHHHHHHHhhcccccccccccccccccceeecccccCcc
Confidence 5678899999999999999999999999999999998753211 1111 1 223344443 4579999999997543
Q ss_pred ccccccHHHHhcCCCCcEEEEcCCC
Q 006864 297 TSKIFNDETFAKMKKGVRIVNVARG 321 (628)
Q Consensus 297 t~~li~~~~l~~mk~gailIN~aRg 321 (628)
.. .....+..++++.+++|+--.
T Consensus 93 ~~--~~~~~~~~~~~~~~v~D~vY~ 115 (170)
T d1nyta1 93 GD--IPAIPSSLIHPGIYCYDMFYQ 115 (170)
T ss_dssp TC--CCCCCGGGCCTTCEEEESCCC
T ss_pred cC--CCCCcHHHhccCcEEEEeecC
Confidence 21 112223446677776666533
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=96.83 E-value=0.0011 Score=57.65 Aligned_cols=85 Identities=15% Similarity=0.221 Sum_probs=55.9
Q ss_pred CeEEEEecChhHHHHHHHHHcCCCEEEEECCCCCh-hHH-HHcCCccc-----C---HHHH-hccCCEEEEcCCCCcccc
Q 006864 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPA-DKA-RAVGVELV-----S---FDQA-LATADFISLHMPLNPTTS 298 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a-~~~g~~~~-----s---l~el-l~~aDvV~l~~Plt~~t~ 298 (628)
++|.|+|+|++|+.+|+.|...|.+|++.|..... +.. .+.+...+ + |+++ ++++|.++..++-. ..
T Consensus 1 M~IvI~G~G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~~~~~vi~Gd~~~~~~l~~~~i~~a~~vv~~t~~d--~~ 78 (132)
T d1lssa_ 1 MYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEIDALVINGDCTKIKTLEDAGIEDADMYIAVTGKE--EV 78 (132)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCSSEEEESCTTSHHHHHHTTTTTCSEEEECCSCH--HH
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCcceecCChhhhhhhhhhhhhhhccCcccchhhhhhcChhhhhhhcccCCcH--HH
Confidence 47999999999999999999999999999876422 222 23354322 2 3343 67899998877632 23
Q ss_pred ccccHHHHhcCCCCcEEE
Q 006864 299 KIFNDETFAKMKKGVRIV 316 (628)
Q Consensus 299 ~li~~~~l~~mk~gailI 316 (628)
+++-....+.+.+..++.
T Consensus 79 N~~~~~~~k~~~~~~iI~ 96 (132)
T d1lssa_ 79 NLMSSLLAKSYGINKTIA 96 (132)
T ss_dssp HHHHHHHHHHTTCCCEEE
T ss_pred HHHHHHHHHHcCCceEEE
Confidence 344344444555554443
|
| >d1zpva1 d.58.18.7 (A:1-83) UPF0237 protein SP0238 {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: ACT-like family: SP0238-like domain: UPF0237 protein SP0238 species: Streptococcus pneumoniae [TaxId: 1313]
Probab=96.82 E-value=0.0011 Score=53.46 Aligned_cols=60 Identities=18% Similarity=0.209 Sum_probs=42.6
Q ss_pred EEEEeccCCCCchhhHHhhhhcCCccccceEEeeeecCccEEE--EEEeCCCCCH-HHHHHHhcc
Q 006864 560 LILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIM--AIGVDEEPNQ-DSLKEIGKV 621 (628)
Q Consensus 560 ~Llv~~~D~PGvIa~V~~iL~~~~INIa~m~v~R~~~gg~Al~--~i~vD~~~~~-~~l~~L~~l 621 (628)
.|-+.-+|+||+++.|++.|.++|+||.+++-... ++.-.| .+.++...+. ++.++|..+
T Consensus 4 vitv~g~DrpGiVa~vt~~l~~~g~NI~d~~q~~~--~~~f~~~~~v~~~~~~~~~~l~~~l~~l 66 (83)
T d1zpva1 4 IITVVGKDKSGIVAGVSGKIAELGLNIDDISQTVL--DEYFTMMAVVSSDEKQDFTYLRNEFEAF 66 (83)
T ss_dssp EEEEEESCCTTHHHHHHHHHHHTTCEEEEEEEEEE--TTEEEEEEEEEESSCCCHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHCCCeEEEEEeEEe--CCEEEEEEEEEEecCCCHHHHHHHHHHH
Confidence 44556799999999999999999999999988654 344444 4444455443 455555544
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.81 E-value=0.0015 Score=59.20 Aligned_cols=87 Identities=23% Similarity=0.297 Sum_probs=61.2
Q ss_pred cCCeEEEEecChhHHHHHHHHHcCCC-EEEEECCCC-ChhHHHHcCCccc------CHHHHh--------ccCCEEEEcC
Q 006864 228 VGKTLAVMGFGKVGSEVARRAKGLGM-NVIAHDPYA-PADKARAVGVELV------SFDQAL--------ATADFISLHM 291 (628)
Q Consensus 228 ~GktiGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~-~~~~a~~~g~~~~------sl~ell--------~~aDvV~l~~ 291 (628)
.|.++.|+|.|.||...++.++.+|. +|++.|+.. ..+.++++|+..+ +..+.. ..+|+|+-++
T Consensus 26 ~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~~Ga~~~~~~~~~~~~~~~~~~~~~~g~g~Dvvid~~ 105 (171)
T d1pl8a2 26 LGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADLVLQISKESPQEIARKVEGQLGCKPEVTIECT 105 (171)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEEEECSSCCHHHHHHHHHHHHTSCCSEEEECS
T ss_pred CCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHHhCCcccccccccccccccccccccCCCCceEEEecc
Confidence 36789999999999999999999998 899999875 3456777776421 232222 2468887777
Q ss_pred CCCccccccccHHHHhcCCCCcEEEEcC
Q 006864 292 PLNPTTSKIFNDETFAKMKKGVRIVNVA 319 (628)
Q Consensus 292 Plt~~t~~li~~~~l~~mk~gailIN~a 319 (628)
.. +.+ -+..++.++++..++.++
T Consensus 106 G~-~~~----~~~a~~~~~~gG~iv~~G 128 (171)
T d1pl8a2 106 GA-EAS----IQAGIYATRSGGTLVLVG 128 (171)
T ss_dssp CC-HHH----HHHHHHHSCTTCEEEECS
T ss_pred CC-chh----HHHHHHHhcCCCEEEEEe
Confidence 52 211 244566677877777765
|
| >d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH species: Lactobacillus confusus [TaxId: 1583]
Probab=96.81 E-value=0.00069 Score=60.71 Aligned_cols=91 Identities=18% Similarity=0.193 Sum_probs=57.9
Q ss_pred CeEEEEecChhHHHHHHHHHcCC--CEEEEECCCCChhHHHHc---------CCc---ccCHHHHhccCCEEEEcCCCCc
Q 006864 230 KTLAVMGFGKVGSEVARRAKGLG--MNVIAHDPYAPADKARAV---------GVE---LVSFDQALATADFISLHMPLNP 295 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~G--~~V~~~d~~~~~~~a~~~---------g~~---~~sl~ell~~aDvV~l~~Plt~ 295 (628)
|+|+|||.|.+|..+|..|...| -++..||..........+ ... ...-.+.++.||+|+++.....
T Consensus 2 kKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~~~Dl~~a~~~~~~~~~~~~~d~~~l~~adiVVitaG~~~ 81 (146)
T d1hyha1 2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVINDWAALADADVVISTLGNIK 81 (146)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEEESCGGGGTTCSEEEECCSCGG
T ss_pred CeEEEECcCHHHHHHHHHHHhcCCCceEEEEecccchhhhHHHhhhccccccCCccceeccCHHHhccccEEEEeccccc
Confidence 79999999999999999987666 489999976432111111 110 1122356899999999876422
Q ss_pred -------cccc-cc--cH-------HHHhcCCCCcEEEEcCC
Q 006864 296 -------TTSK-IF--ND-------ETFAKMKKGVRIVNVAR 320 (628)
Q Consensus 296 -------~t~~-li--~~-------~~l~~mk~gailIN~aR 320 (628)
+++. ++ |. ..+....|.+++++++-
T Consensus 82 ~~~~~~g~~R~~l~~~N~~i~~~i~~~i~~~~p~aivivvtN 123 (146)
T d1hyha1 82 LQQDNPTGDRFAELKFTSSMVQSVGTNLKESGFHGVLVVISN 123 (146)
T ss_dssp GTC-------CTTHHHHHHHHHHHHHHHHHTTCCSEEEECSS
T ss_pred cccccCCccHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEecC
Confidence 1221 11 11 23445678999999874
|
| >d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Toxoplasma gondii [TaxId: 5811]
Probab=96.76 E-value=0.0021 Score=57.87 Aligned_cols=93 Identities=20% Similarity=0.253 Sum_probs=61.2
Q ss_pred cCCeEEEEecChhHHHHHHHHHcCCC-EEEEECCCCChhHH--HH-------cCCc-----ccCHHHHhccCCEEEEcCC
Q 006864 228 VGKTLAVMGFGKVGSEVARRAKGLGM-NVIAHDPYAPADKA--RA-------VGVE-----LVSFDQALATADFISLHMP 292 (628)
Q Consensus 228 ~GktiGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~~~~~a--~~-------~g~~-----~~sl~ell~~aDvV~l~~P 292 (628)
+-++|+|||.|.+|+.+|..+...++ ++..||........ .+ .+.. ..+.++.++.||+|++++.
T Consensus 6 k~~KI~IIGaG~VG~~lA~~l~~~~~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~~~~~~~adiVvitag 85 (154)
T d1pzga1 6 RRKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRAEYSYEAALTGADCVIVTAG 85 (154)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEEECSHHHHHTTCSEEEECCS
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCceEEEEEeccccchhHHHHHhhhccccCCeeEEeccCchhhhhcCCCeEEEecc
Confidence 35799999999999999988876664 89999977543221 11 1111 1246788999999999884
Q ss_pred CC--cc------cccc-c--cH-------HHHhcCCCCcEEEEcCC
Q 006864 293 LN--PT------TSKI-F--ND-------ETFAKMKKGVRIVNVAR 320 (628)
Q Consensus 293 lt--~~------t~~l-i--~~-------~~l~~mk~gailIN~aR 320 (628)
.. +. ++.- + |. ..+....|.+++++++.
T Consensus 86 ~~~~~g~~~~~~tR~~l~~~n~~iv~~i~~~i~~~~p~aiviivsN 131 (154)
T d1pzga1 86 LTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPKTFIIVVTN 131 (154)
T ss_dssp CSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECCS
T ss_pred cccCCCCCCcccchhhhhhhhHHHHHHHHHHHHhcCCCcEEEEeCC
Confidence 32 11 3221 1 11 23445578899999864
|
| >d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chlorobium vibrioforme [TaxId: 1098]
Probab=96.73 E-value=0.0024 Score=56.44 Aligned_cols=91 Identities=21% Similarity=0.261 Sum_probs=59.6
Q ss_pred CeEEEEecChhHHHHHHHHHcCC--CEEEEECCCCChhHHHHc-----------CCc--ccCHHHHhccCCEEEEcC--C
Q 006864 230 KTLAVMGFGKVGSEVARRAKGLG--MNVIAHDPYAPADKARAV-----------GVE--LVSFDQALATADFISLHM--P 292 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~G--~~V~~~d~~~~~~~a~~~-----------g~~--~~sl~ell~~aDvV~l~~--P 292 (628)
++|+|||.|.+|+.+|..+...| -++..||........... ... ..+..+.+++||+|+++. |
T Consensus 1 mKI~IIGaG~VG~~la~~l~~~~l~~el~L~Di~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~dadvvvitag~~ 80 (142)
T d1guza1 1 MKITVIGAGNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGSNDYADTANSDIVIITAGLP 80 (142)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEEESCGGGGTTCSEEEECCSCC
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCceEEEeccccccchhhhhhhhcccchhcccceEEecCCHHHhcCCeEEEEEEecC
Confidence 47999999999999999998777 489999977643222111 111 124567889999999985 3
Q ss_pred CCcc-ccccc---cH-------HHHhcCCCCcEEEEcCC
Q 006864 293 LNPT-TSKIF---ND-------ETFAKMKKGVRIVNVAR 320 (628)
Q Consensus 293 lt~~-t~~li---~~-------~~l~~mk~gailIN~aR 320 (628)
..+. ++.-+ |. +.+....|.+++++++.
T Consensus 81 ~~~g~~r~~l~~~N~~i~~~i~~~i~~~~p~aivivvtN 119 (142)
T d1guza1 81 RKPGMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIVVSN 119 (142)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHHHHHHHHCSSCEEEECCS
T ss_pred CCCCCchHHHHHHHHHHHHHHHHHhhccCCCeEEEEecC
Confidence 3332 22111 11 23444568899999864
|
| >d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Glycinamide ribonucleotide transformylase PurT, N-domain species: Escherichia coli [TaxId: 562]
Probab=96.72 E-value=0.00099 Score=56.90 Aligned_cols=75 Identities=24% Similarity=0.392 Sum_probs=50.3
Q ss_pred ecCCeEEEEecChhHHHHHHHHHcCCCEEEEECCCCChhHHHHcCC-----cccCH---HHHhc--cCCEEEEcCCCCcc
Q 006864 227 LVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGV-----ELVSF---DQALA--TADFISLHMPLNPT 296 (628)
Q Consensus 227 l~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~-----~~~sl---~ell~--~aDvV~l~~Plt~~ 296 (628)
..+.||||+|-|..|+.+|..++.+|++++++||+.... +....- .+.+. .++.. ++|+|+. |
T Consensus 9 ~~~~kigIlGgGQL~rMla~aA~~lG~~v~v~d~~~~~P-A~~va~~~i~~~~~d~~~l~~~~~~~~~DviT~------E 81 (111)
T d1kjqa2 9 PAATRVMLLGSGELGKEVAIECQRLGVEVIAVDRYADAP-AMHVAHRSHVINMLDGDALRRVVELEKPHYIVP------E 81 (111)
T ss_dssp TTCCEEEEESCSHHHHHHHHHHHTTTCEEEEEESSTTCG-GGGGSSEEEECCTTCHHHHHHHHHHHCCSEEEE------C
T ss_pred CCCCEEEEEeCCHHHHHHHHHHHHCCCEEEEEcCCCCCc-hhhcCCeEEECCCCCHHHHHHHHHhhCCceEEE------E
Confidence 356789999999999999999999999999999986432 222211 12233 34443 4699966 3
Q ss_pred ccccccHHHHhcC
Q 006864 297 TSKIFNDETFAKM 309 (628)
Q Consensus 297 t~~li~~~~l~~m 309 (628)
.++ ++.+.++.+
T Consensus 82 ~En-I~~~~L~~l 93 (111)
T d1kjqa2 82 IEA-IATDMLIQL 93 (111)
T ss_dssp SSC-SCHHHHHHH
T ss_pred ecC-cCHHHHHHH
Confidence 333 355555555
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=96.67 E-value=0.0023 Score=57.62 Aligned_cols=45 Identities=27% Similarity=0.394 Sum_probs=37.4
Q ss_pred cCCeEEEEecChhHHHHHHHHHcCCCEEEEECCCC-ChhHHHHcCC
Q 006864 228 VGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA-PADKARAVGV 272 (628)
Q Consensus 228 ~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~g~ 272 (628)
.|.++.|+|.|.||...++.++.+|.+|+++|+.. ..+.++++|.
T Consensus 26 ~g~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~~r~~~a~~~ga 71 (170)
T d1e3ja2 26 LGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKNCGA 71 (170)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTC
T ss_pred CCCEEEEEcccccchhhHhhHhhhcccccccchHHHHHHHHHHcCC
Confidence 46799999999999999999999999999999875 3344566654
|
| >d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Putative oxidoreductase VCA1048 species: Vibrio cholerae [TaxId: 666]
Probab=96.66 E-value=0.002 Score=58.09 Aligned_cols=103 Identities=11% Similarity=0.135 Sum_probs=62.7
Q ss_pred CeEEEEecChhHHH-HHHHHHcC-CCEEEEECCCCCh--hHHHHcCCc--ccCHHHHhc-cCCEEEEcCCCCcccccccc
Q 006864 230 KTLAVMGFGKVGSE-VARRAKGL-GMNVIAHDPYAPA--DKARAVGVE--LVSFDQALA-TADFISLHMPLNPTTSKIFN 302 (628)
Q Consensus 230 ktiGIIGlG~IG~~-vA~~l~~~-G~~V~~~d~~~~~--~~a~~~g~~--~~sl~ell~-~aDvV~l~~Plt~~t~~li~ 302 (628)
.++||||+|.+|+. ....++.. +.++.++|+.... ..+...++. +.+++++++ +.|+|++++|-. +..-+-
T Consensus 2 irvgiiG~G~~~~~~~~~~l~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ll~~~iD~V~I~tp~~--~H~~~~ 79 (167)
T d1xeaa1 2 LKIAMIGLGDIAQKAYLPVLAQWPDIELVLCTRNPKVLGTLATRYRVSATCTDYRDVLQYGVDAVMIHAATD--VHSTLA 79 (167)
T ss_dssp EEEEEECCCHHHHHTHHHHHTTSTTEEEEEECSCHHHHHHHHHHTTCCCCCSSTTGGGGGCCSEEEECSCGG--GHHHHH
T ss_pred eEEEEEcCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHhcccccccccHHHhcccccceeccccccc--cccccc
Confidence 37999999999976 56677666 5688889886422 233445553 347888876 579999999833 333333
Q ss_pred HHHHhcCCCCcEEEEc-CCCchhcHHHHHHHHhCC
Q 006864 303 DETFAKMKKGVRIVNV-ARGGVIDEEALVRALDSG 336 (628)
Q Consensus 303 ~~~l~~mk~gailIN~-aRg~~vde~aL~~aL~~g 336 (628)
...++. +.. +++.- .--.+-+.+.|.++.++.
T Consensus 80 ~~al~~-gk~-V~~EKP~~~~~~e~~~l~~~a~~~ 112 (167)
T d1xeaa1 80 AFFLHL-GIP-TFVDKPLAASAQECENLYELAEKH 112 (167)
T ss_dssp HHHHHT-TCC-EEEESCSCSSHHHHHHHHHHHHHT
T ss_pred cccccc-ccc-cccCCCCcCCHHHHHHHHHHHHHc
Confidence 333332 222 44432 223344556677776554
|
| >d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Clostridium thermocellum [TaxId: 1515]
Probab=96.63 E-value=0.0018 Score=57.60 Aligned_cols=91 Identities=18% Similarity=0.168 Sum_probs=56.0
Q ss_pred CeEEEEecChhHHHHHHHHHcCCC--EEEEECCCCCh--hHHHHcC--Cc-------ccCHHHHhccCCEEEEcCCCCc-
Q 006864 230 KTLAVMGFGKVGSEVARRAKGLGM--NVIAHDPYAPA--DKARAVG--VE-------LVSFDQALATADFISLHMPLNP- 295 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~G~--~V~~~d~~~~~--~~a~~~g--~~-------~~sl~ell~~aDvV~l~~Plt~- 295 (628)
++|+|||.|.+|..+|..+...+. ++..||..... ..+.++. .. ...-.+.++.||+|+++.-...
T Consensus 2 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~~~~adivvitag~~~~ 81 (142)
T d1y6ja1 2 SKVAIIGAGFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYAGDYSDVKDCDVIVVTAGANRK 81 (142)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC--CGGGGTTCSEEEECCCC---
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeccCCccceeeeeeccCcccCCCeeEeeCcHHHhCCCceEEEecccccC
Confidence 589999999999999999886664 89999976532 2222221 11 1123466899999999854222
Q ss_pred --cccc-cc--cH-------HHHhcCCCCcEEEEcCC
Q 006864 296 --TTSK-IF--ND-------ETFAKMKKGVRIVNVAR 320 (628)
Q Consensus 296 --~t~~-li--~~-------~~l~~mk~gailIN~aR 320 (628)
+++. ++ |. +.+....|.+++++++.
T Consensus 82 ~~~~r~~l~~~N~~i~~~i~~~i~~~~p~ai~ivvtN 118 (142)
T d1y6ja1 82 PGETRLDLAKKNVMIAKEVTQNIMKYYNHGVILVVSN 118 (142)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHCCSCEEEECSS
T ss_pred cCcchhHHhhHHHHHHHHHHHHhhccCCCceEEEecC
Confidence 1221 11 11 22445678899999865
|
| >d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Diaminopimelic acid dehydrogenase (DAPDH) species: Corynebacterium glutamicum [TaxId: 1718]
Probab=96.62 E-value=0.0009 Score=60.98 Aligned_cols=82 Identities=18% Similarity=0.240 Sum_probs=54.6
Q ss_pred CeEEEEecChhHHHHHHHHHcC-CCEEEE-ECCCCChhHHHHcCCc-ccCHHHHhccCCEEEEcCCCCccccccccHHHH
Q 006864 230 KTLAVMGFGKVGSEVARRAKGL-GMNVIA-HDPYAPADKARAVGVE-LVSFDQALATADFISLHMPLNPTTSKIFNDETF 306 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~-G~~V~~-~d~~~~~~~a~~~g~~-~~sl~ell~~aDvV~l~~Plt~~t~~li~~~~l 306 (628)
.++||||+|.||+.+++.++.. ++++++ +|+.... ....++. ..++++++.+.|+|++++|... . -+-..
T Consensus 4 irvgiiG~G~ig~~~~~~l~~~~~~elvav~~~~~~~--~~~~~~~~~~~~~~~~~~~D~Vvi~tp~~~--h---~~~a~ 76 (170)
T d1f06a1 4 IRVAIVGYGNLGRSVEKLIAKQPDMDLVGIFSRRATL--DTKTPVFDVADVDKHADDVDVLFLCMGSAT--D---IPEQA 76 (170)
T ss_dssp EEEEEECCSHHHHHHHHHHTTCSSEEEEEEEESSSCC--SSSSCEEEGGGGGGTTTTCSEEEECSCTTT--H---HHHHH
T ss_pred ceEEEECChHHHHHHHHHHHhCCCcEEEEEEeccccc--ccccccccchhhhhhccccceEEEeCCCcc--c---HHHHH
Confidence 4799999999999999999976 577765 4655321 1112222 3367788889999999999543 2 12233
Q ss_pred hcCCCCcEEEEc
Q 006864 307 AKMKKGVRIVNV 318 (628)
Q Consensus 307 ~~mk~gailIN~ 318 (628)
..++.|.-+|.+
T Consensus 77 ~aL~aG~~vv~~ 88 (170)
T d1f06a1 77 PKFAQFACTVDT 88 (170)
T ss_dssp HHHTTTSEEECC
T ss_pred HHHHCCCcEEEe
Confidence 345677666644
|
| >d1mv8a3 c.26.3.1 (A:301-436) GDP-mannose 6-dehydrogenase, GDP-binding domain {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain family: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain domain: GDP-mannose 6-dehydrogenase, GDP-binding domain species: Pseudomonas aeruginosa [TaxId: 287]
Probab=96.60 E-value=0.0011 Score=58.19 Aligned_cols=87 Identities=16% Similarity=0.202 Sum_probs=63.3
Q ss_pred ecCCeEEEEec----------ChhHHHHHHHHHcCCCEEEEECCCCChhHH--------H----HcCCc-ccCHHHHhcc
Q 006864 227 LVGKTLAVMGF----------GKVGSEVARRAKGLGMNVIAHDPYAPADKA--------R----AVGVE-LVSFDQALAT 283 (628)
Q Consensus 227 l~GktiGIIGl----------G~IG~~vA~~l~~~G~~V~~~d~~~~~~~a--------~----~~g~~-~~sl~ell~~ 283 (628)
+.+++|||+|+ +.-...+++.|...|++|.+|||+.+.... . ..+.. ..++++++..
T Consensus 11 ~~~kkI~ilGlafK~~t~D~R~Sps~~li~~L~~~g~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~i~~ 90 (136)
T d1mv8a3 11 HDTRKVGLLGLSFKAGTDDLRESPLVELAEMLIGKGYELRIFDRNVEYARVHGANKEYIESKIPHVSSLLVSDLDEVVAS 90 (136)
T ss_dssp SSCCEEEEECCSSSTTCCCCTTCHHHHHHHHHHHTTCEEEEECHHHHHHTTSSSCHHHHHHTSHHHHTTBCSCHHHHHHH
T ss_pred cCCCEEEEEEEEECCCCcchhcCHHHHHHHHHhhhhccccccCCCCCHHHHhhhhhhhhhhccccccceeehhhhhhhhh
Confidence 56799999998 456788999999999999999996432110 0 11112 3489999999
Q ss_pred CCEEEEcCCCCccccccccHHHHhcCCCCcEEEEcC
Q 006864 284 ADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVA 319 (628)
Q Consensus 284 aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~a 319 (628)
||+|+++++- ++- .+....++++.+|+|+-
T Consensus 91 ~D~ivi~t~h-~~f-----~~l~~~~~~~~~I~D~~ 120 (136)
T d1mv8a3 91 SDVLVLGNGD-ELF-----VDLVNKTPSGKKLVDLV 120 (136)
T ss_dssp CSEEEECSCC-GGG-----HHHHHSCCTTCEEEESS
T ss_pred ceEEEEEeCC-HHH-----HHHHHHhcCCCEEEECC
Confidence 9999999872 222 33455677888999973
|
| >d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Putative shikimate dehydrogenase YdiB species: Escherichia coli [TaxId: 562]
Probab=96.59 E-value=0.003 Score=57.96 Aligned_cols=94 Identities=21% Similarity=0.370 Sum_probs=62.6
Q ss_pred eeeecCCeEEEEecChhHHHHHHHHHcCCC-EEEEECCCCC-hhHHH----HcC----C--c---c---cCHHHHhccCC
Q 006864 224 GVSLVGKTLAVMGFGKVGSEVARRAKGLGM-NVIAHDPYAP-ADKAR----AVG----V--E---L---VSFDQALATAD 285 (628)
Q Consensus 224 g~~l~GktiGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~~-~~~a~----~~g----~--~---~---~sl~ell~~aD 285 (628)
+.++.||++.|+|.|..|++++..|...|. ++..+++... .++.. ..+ . . . .++.+.+.++|
T Consensus 13 ~~~l~~k~vlIlGaGGaarai~~al~~~g~~~i~i~nR~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 92 (182)
T d1vi2a1 13 GFDIKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTVTDLADQQAFAEALASAD 92 (182)
T ss_dssp TCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHHHTCS
T ss_pred CCCcCCCEEEEECCcHHHHHHHHHHhhcCCceEeeeccchHHHHHHHHHHHHHHhhcCcceEeeecccccchhhhhcccc
Confidence 567899999999999999999999999997 6888888753 22221 111 1 1 1 12556678999
Q ss_pred EEEEcCCCCccc---cccccHHHHhcCCCCcEEEEcC
Q 006864 286 FISLHMPLNPTT---SKIFNDETFAKMKKGVRIVNVA 319 (628)
Q Consensus 286 vV~l~~Plt~~t---~~li~~~~l~~mk~gailIN~a 319 (628)
+|+.++|+.... ..++. .+..++++.+++|+.
T Consensus 93 iiIN~Tp~G~~~~~~~~~~~--~~~~~~~~~~v~Di~ 127 (182)
T d1vi2a1 93 ILTNGTKVGMKPLENESLVN--DISLLHPGLLVTECV 127 (182)
T ss_dssp EEEECSSTTSTTSCSCCSCC--CGGGSCTTCEEEECC
T ss_pred eeccccCCccccccchhhhh--HHHhhhcchhhHHhh
Confidence 999999965321 11111 133456666666654
|
| >d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=96.58 E-value=0.0029 Score=55.99 Aligned_cols=90 Identities=16% Similarity=0.179 Sum_probs=57.5
Q ss_pred CeEEEEecChhHHHHHHHHHcCC--CEEEEECCCCChhHHHHcC------C----c-ccCHHHHhccCCEEEEcCCCCcc
Q 006864 230 KTLAVMGFGKVGSEVARRAKGLG--MNVIAHDPYAPADKARAVG------V----E-LVSFDQALATADFISLHMPLNPT 296 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~G--~~V~~~d~~~~~~~a~~~g------~----~-~~sl~ell~~aDvV~l~~Plt~~ 296 (628)
.+|+|||.|.+|..+|..+...+ -++..||..........+. + . ..+..+.++.||+|+++.-.. .
T Consensus 1 mKI~IIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~~~Dl~~~~~~~~~~~~~~~~~~~~~~adivvitag~~-~ 79 (140)
T d1a5za1 1 MKIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYAGDYADLKGSDVVIVAAGVP-Q 79 (140)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEEECCGGGGTTCSEEEECCCCC-C
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCCEEEEEecccccccchhccccccccccccccccCCcHHHhcCCCEEEEecccc-c
Confidence 48999999999999999886444 6899999764222211111 1 1 113456689999999986421 1
Q ss_pred ccccc-------cH-------HHHhcCCCCcEEEEcCC
Q 006864 297 TSKIF-------ND-------ETFAKMKKGVRIVNVAR 320 (628)
Q Consensus 297 t~~li-------~~-------~~l~~mk~gailIN~aR 320 (628)
..++- |. +.+....|++++++++-
T Consensus 80 ~~g~~r~dl~~~N~~I~~~i~~~i~~~~p~aivivvtN 117 (140)
T d1a5za1 80 KPGETRLQLLGRNARVMKEIARNVSKYAPDSIVIVVTN 117 (140)
T ss_dssp CSSCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECSS
T ss_pred CCCcchhhhhccccchHHHHHHHHHhcCCCcEEEEeCC
Confidence 22221 11 23455678999999874
|
| >d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Cow (Bos taurus) [TaxId: 9913]
Probab=96.58 E-value=0.0029 Score=62.81 Aligned_cols=107 Identities=21% Similarity=0.255 Sum_probs=72.7
Q ss_pred eeeecCCeEEEEecChhHHHHHHHHHcCCCEEEEEC--------CCC-ChhHHHH----cC-C-----cccCHHHHhc-c
Q 006864 224 GVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHD--------PYA-PADKARA----VG-V-----ELVSFDQALA-T 283 (628)
Q Consensus 224 g~~l~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d--------~~~-~~~~a~~----~g-~-----~~~sl~ell~-~ 283 (628)
..+|.|||+.|=|+|++|+.+|+.|...|++|++.+ +.- +.+...+ .+ + ...+-++++. .
T Consensus 31 ~~~L~gktvaIqGfGnVG~~~A~~L~e~Gakvv~vsD~~G~i~~~~Gld~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (293)
T d1hwxa1 31 TPGFGDKTFAVQGFGNVGLHSMRYLHRFGAKCVAVGESDGSIWNPDGIDPKELEDFKLQHGTILGFPKAKIYEGSILEVD 110 (293)
T ss_dssp CSSSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEEETTEEECCTTCCCHHHHHHHHHTTSSSTTCTTSCBCCSCGGGCC
T ss_pred CCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEccchhhccccccchHHHHHHHHHcCCeecccccccCCcccccCC
Confidence 457999999999999999999999999999998763 221 2221111 01 0 1223345555 7
Q ss_pred CCEEEEcCCCCccccccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhCCCe
Q 006864 284 ADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVV 338 (628)
Q Consensus 284 aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~~vde~aL~~aL~~g~i 338 (628)
||+++-|. +.+.|+.+...+++- .+|+-.|.|.+- .+|. +.|.+..|
T Consensus 111 ~DIliPaA-----~~~~I~~~~a~~l~a-k~I~EgAN~P~t-~eA~-~~L~~~gI 157 (293)
T d1hwxa1 111 CDILIPAA-----SEKQLTKSNAPRVKA-KIIAEGANGPTT-PQAD-KIFLERNI 157 (293)
T ss_dssp CSEEEECS-----SSSCBCTTTGGGCCC-SEEECCSSSCBC-HHHH-HHHHHTTC
T ss_pred ccEEeecc-----ccccccHHHHHHHhh-CEEeccCCCCCC-cchH-HHHHHCCC
Confidence 99998875 567888888888864 477788888864 4443 45555444
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=96.58 E-value=0.0011 Score=60.72 Aligned_cols=45 Identities=31% Similarity=0.382 Sum_probs=37.0
Q ss_pred cCCeEEEEecChhHHHHHHHHHcCCC-EEEEECCCC-ChhHHHHcCC
Q 006864 228 VGKTLAVMGFGKVGSEVARRAKGLGM-NVIAHDPYA-PADKARAVGV 272 (628)
Q Consensus 228 ~GktiGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~-~~~~a~~~g~ 272 (628)
.|.+|.|+|.|.||...++.++.+|+ +|++.|+.. ..+.++++|+
T Consensus 28 ~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~lGa 74 (182)
T d1vj0a2 28 AGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIGA 74 (182)
T ss_dssp BTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHTTC
T ss_pred CCCEEEEECCCccchhheecccccccccccccccccccccccccccc
Confidence 58899999999999999999999997 899999865 2344555553
|
| >d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=96.51 E-value=0.003 Score=56.63 Aligned_cols=93 Identities=15% Similarity=0.133 Sum_probs=59.5
Q ss_pred CCeEEEEecChhHHHHHHHHHcCC-CEEEEECCCCChhHH--HHc-------CCc----ccCHHHHhccCCEEEEcCCCC
Q 006864 229 GKTLAVMGFGKVGSEVARRAKGLG-MNVIAHDPYAPADKA--RAV-------GVE----LVSFDQALATADFISLHMPLN 294 (628)
Q Consensus 229 GktiGIIGlG~IG~~vA~~l~~~G-~~V~~~d~~~~~~~a--~~~-------g~~----~~sl~ell~~aDvV~l~~Plt 294 (628)
..+|+|||.|.+|+.+|..+...+ .++..||........ .++ +.. ..+..+.++.||+|+++.-..
T Consensus 3 ~~KI~IIGaG~VG~~~a~~l~~~~l~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~v~~~~~~~~~~~advvvitag~~ 82 (150)
T d1t2da1 3 KAKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGSNTYDDLAGADVVIVTAGFT 82 (150)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEEECCGGGGTTCSEEEECCSCS
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCCeEEEEeccCCcceeeecchhhhccccCCCcEEEecccccccCCCcEEEEecccc
Confidence 368999999999999999887655 389999976533221 111 111 123457789999999987632
Q ss_pred cc---c-----cc-cc--cH-------HHHhcCCCCcEEEEcCCC
Q 006864 295 PT---T-----SK-IF--ND-------ETFAKMKKGVRIVNVARG 321 (628)
Q Consensus 295 ~~---t-----~~-li--~~-------~~l~~mk~gailIN~aRg 321 (628)
.. + +- ++ |. +.+....|++++++++..
T Consensus 83 ~~~g~~~~~~~R~~l~~~N~~iv~~i~~~i~~~~p~aivivvtNP 127 (150)
T d1t2da1 83 KAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFIIVVTNP 127 (150)
T ss_dssp SCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSSS
T ss_pred cCCCCCccccchhHHHHHHHHHHHHHHHHHHhcCCCeEEEEecCc
Confidence 21 1 21 11 21 124445689999998753
|
| >d1u8sa1 d.58.18.5 (A:2-87) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: ACT-like family: Glycine cleavage system transcriptional repressor domain: putative transcriptional repressor VC2159 species: Vibrio cholerae [TaxId: 666]
Probab=96.50 E-value=0.00061 Score=55.42 Aligned_cols=47 Identities=17% Similarity=0.173 Sum_probs=35.2
Q ss_pred EEEeccCCCCchhhHHhhhhcCCccccceEEeeeecCccEEEEEEeC
Q 006864 561 ILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVD 607 (628)
Q Consensus 561 Llv~~~D~PGvIa~V~~iL~~~~INIa~m~v~R~~~gg~Al~~i~vD 607 (628)
+-+.-+|+||+++.|++.|+++|+||.+++..+....-..+|.++.+
T Consensus 8 itv~G~DrpGiva~vt~~l~~~g~NI~d~~~~~~~~~~~~~~~v~~~ 54 (86)
T d1u8sa1 8 ITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLISGS 54 (86)
T ss_dssp EEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEEC
T ss_pred EEEEeCCCChHHHHHHHHHHHCCCeEEEeEeEEECCeeEEEEEEEcC
Confidence 34456999999999999999999999999887654333334444443
|
| >d2b0ja2 c.2.1.6 (A:1-242) 5,10-methenyltetrahydromethanopterin hydrogenase, HMD {Archaeon Methanocaldococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 5,10-methenyltetrahydromethanopterin hydrogenase, HMD species: Archaeon Methanocaldococcus jannaschii [TaxId: 2190]
Probab=96.45 E-value=0.0052 Score=59.35 Aligned_cols=69 Identities=13% Similarity=0.202 Sum_probs=58.5
Q ss_pred HcCCccc-CHHHHhccCCEEEEcCCCCccccccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhCCCe
Q 006864 269 AVGVELV-SFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVV 338 (628)
Q Consensus 269 ~~g~~~~-sl~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~~vde~aL~~aL~~g~i 338 (628)
+.|++.+ +..|++++||+|++++|..+.+..++ ++....+++|++|+|++.........+.+.++...+
T Consensus 126 e~Gv~v~~d~~Eav~~ADiII~~vP~~~~v~~Vi-~~I~~~l~~g~Iiid~STi~~~~~~~l~e~l~~kgi 195 (242)
T d2b0ja2 126 DVGLKVTSDDREAVEGADIVITWLPKGNKQPDII-KKFADAIPEGAIVTHACTIPTTKFAKIFKDLGREDL 195 (242)
T ss_dssp GGTCEEESCHHHHHTTCSEEEECCTTCTTHHHHH-HHHGGGSCTTCEEEECSSSCHHHHHHHHHHTTCTTS
T ss_pred HCCCEEECCHHHHHhcCCeEEEeeecHHHHHHHH-HHHHhhCCCCcEEEecCCCcHHHHHHHHHhcccCCC
Confidence 3577655 79999999999999999666666676 678889999999999999999888889998887665
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=96.42 E-value=0.0017 Score=58.66 Aligned_cols=87 Identities=24% Similarity=0.356 Sum_probs=59.3
Q ss_pred cCCeEEEEecChhHHHHHHHHHcCCCEEEEECCCC-ChhHHHHcCCccc----C---HHHHhccCCEEEEcCCCCccccc
Q 006864 228 VGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA-PADKARAVGVELV----S---FDQALATADFISLHMPLNPTTSK 299 (628)
Q Consensus 228 ~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~g~~~~----s---l~ell~~aDvV~l~~Plt~~t~~ 299 (628)
.|.++.|+|.|.||...++.++.+|+++++.|+.. ..+.++++|+..+ + ..+..+..|+++-++.... +
T Consensus 30 ~G~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~~~~~~a~~lGad~~i~~~~~~~~~~~~~~~D~vid~~g~~~-~-- 106 (168)
T d1uufa2 30 PGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKALGADEVVNSRNADEMAAHLKSFDFILNTVAAPH-N-- 106 (168)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHTCSEEEETTCHHHHHTTTTCEEEEEECCSSCC-C--
T ss_pred CCCEEEEeccchHHHHHHHHhhcccccchhhccchhHHHHHhccCCcEEEECchhhHHHHhcCCCceeeeeeecch-h--
Confidence 47899999999999999999999999999998765 3456677776422 1 1223345677777665321 1
Q ss_pred cccHHHHhcCCCCcEEEEcC
Q 006864 300 IFNDETFAKMKKGVRIVNVA 319 (628)
Q Consensus 300 li~~~~l~~mk~gailIN~a 319 (628)
-...+..++++..++.++
T Consensus 107 --~~~~~~~l~~~G~iv~~G 124 (168)
T d1uufa2 107 --LDDFTTLLKRDGTMTLVG 124 (168)
T ss_dssp --HHHHHTTEEEEEEEEECC
T ss_pred --HHHHHHHHhcCCEEEEec
Confidence 134455666666666654
|
| >d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylene-tetrahydromethanopterin dehydrogenase species: Methylobacterium extorquens [TaxId: 408]
Probab=96.30 E-value=0.0032 Score=58.14 Aligned_cols=41 Identities=29% Similarity=0.321 Sum_probs=37.5
Q ss_pred cceeeecCCeEEEEe-cChhHHHHHHHHHcCCCEEEEECCCC
Q 006864 222 YVGVSLVGKTLAVMG-FGKVGSEVARRAKGLGMNVIAHDPYA 262 (628)
Q Consensus 222 ~~g~~l~GktiGIIG-lG~IG~~vA~~l~~~G~~V~~~d~~~ 262 (628)
..|.+|.||++.|.| -|.||+.+|+.|...|++|+..++..
T Consensus 16 ~~~~~l~gK~vlItGasgGIG~~ia~~la~~G~~V~~~~r~~ 57 (191)
T d1luaa1 16 AAGGSVKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKL 57 (191)
T ss_dssp HTTSCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred HcCCCCCCCEEEEECCCHHHHHHHHHHHHhhccchhhcccch
Confidence 357889999999999 79999999999999999999999874
|
| >d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Acetaldehyde dehydrogenase (acylating) species: Pseudomonas sp. [TaxId: 306]
Probab=96.28 E-value=0.0028 Score=57.30 Aligned_cols=88 Identities=18% Similarity=0.364 Sum_probs=60.2
Q ss_pred CeEEEEecChhHHH-HHHHHHcCC-CEEEE-ECCCCC-h--hHHHHcCCccc--CHHHHh-----ccCCEEEEcCCCCcc
Q 006864 230 KTLAVMGFGKVGSE-VARRAKGLG-MNVIA-HDPYAP-A--DKARAVGVELV--SFDQAL-----ATADFISLHMPLNPT 296 (628)
Q Consensus 230 ktiGIIGlG~IG~~-vA~~l~~~G-~~V~~-~d~~~~-~--~~a~~~g~~~~--sl~ell-----~~aDvV~l~~Plt~~ 296 (628)
-++||||.|.||+. +.+.++.+. .++.+ .|++.. . .+++..|+... ++++++ .+.|+|++++|-..
T Consensus 5 irvaIIGaG~ig~~~~~~~l~~~~~~el~avas~~~~~~~~~~a~~~~i~~~~~~~d~l~~~~~~~~iDiVf~ATpag~- 83 (157)
T d1nvmb1 5 LKVAIIGSGNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGLARAQRMGVTTTYAGVEGLIKLPEFADIDFVFDATSASA- 83 (157)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHCSSEEEEEEECSCTTCHHHHHHHHTTCCEESSHHHHHHHSGGGGGEEEEEECSCHHH-
T ss_pred cEEEEEcCcHHHHHHHHHHHhhCCcceEEEEEecchhccchhhhhhcCCcccccceeeeeecccccccCEEEEcCCchh-
Confidence 37999999999986 567787665 46655 466542 2 45677777543 355554 46899999998322
Q ss_pred ccccccHHHHhcCCCCcEEEEcCC
Q 006864 297 TSKIFNDETFAKMKKGVRIVNVAR 320 (628)
Q Consensus 297 t~~li~~~~l~~mk~gailIN~aR 320 (628)
|.-.+..+...+.|+++||-+.
T Consensus 84 --h~~~~~~~~aa~~G~~VID~s~ 105 (157)
T d1nvmb1 84 --HVQNEALLRQAKPGIRLIDLTP 105 (157)
T ss_dssp --HHHHHHHHHHHCTTCEEEECST
T ss_pred --HHHhHHHHHHHHcCCEEEEccc
Confidence 2323445666899999999874
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=96.18 E-value=0.0025 Score=58.21 Aligned_cols=87 Identities=20% Similarity=0.258 Sum_probs=55.7
Q ss_pred cCCeEEEEecChhHHHHHHHHHcCCC-EEEEECCCC-ChhHHHHcCCccc------CHHH-Hhc-----cCCEEEEcCCC
Q 006864 228 VGKTLAVMGFGKVGSEVARRAKGLGM-NVIAHDPYA-PADKARAVGVELV------SFDQ-ALA-----TADFISLHMPL 293 (628)
Q Consensus 228 ~GktiGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~-~~~~a~~~g~~~~------sl~e-ll~-----~aDvV~l~~Pl 293 (628)
.|.++.|+|.|.||...++.++.+|. +|++.|+.. ..+.++++|+..+ ++.+ +.+ -.|+|+-++..
T Consensus 27 ~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~lGa~~~i~~~~~~~~~~v~~~t~g~G~D~vid~~g~ 106 (174)
T d1jqba2 27 MGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFYGATDILNYKNGHIEDQVMKLTNGKGVDRVIMAGGG 106 (174)
T ss_dssp TTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHHHTCSEEECGGGSCHHHHHHHHTTTSCEEEEEECSSC
T ss_pred CCCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHhhCccccccccchhHHHHHHHHhhccCcceEEEccCC
Confidence 47899999999999999999999997 799999875 3455677775321 1222 211 15666666542
Q ss_pred CccccccccHHHHhcCCCCcEEEEcC
Q 006864 294 NPTTSKIFNDETFAKMKKGVRIVNVA 319 (628)
Q Consensus 294 t~~t~~li~~~~l~~mk~gailIN~a 319 (628)
.. .+ +..+..++++..++-++
T Consensus 107 ~~----~~-~~a~~~~~~~G~iv~~G 127 (174)
T d1jqba2 107 SE----TL-SQAVKMVKPGGIISNIN 127 (174)
T ss_dssp TT----HH-HHHHHHEEEEEEEEECC
T ss_pred HH----HH-HHHHHHHhcCCEEEEEe
Confidence 21 11 33345556666666554
|
| >d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=96.17 E-value=0.0028 Score=57.90 Aligned_cols=95 Identities=16% Similarity=0.209 Sum_probs=61.9
Q ss_pred eeeecCCeEEEEecChhHHHHHHHHHcCCCEEEEECCCCChhH--HHHc----C------CcccCHHHHhccCCEEEEcC
Q 006864 224 GVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADK--ARAV----G------VELVSFDQALATADFISLHM 291 (628)
Q Consensus 224 g~~l~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~--a~~~----g------~~~~sl~ell~~aDvV~l~~ 291 (628)
+.+++||++.|+|.|..+++++..|...| +|..++|+..... +... . +...+++..+..+|+++.+.
T Consensus 13 ~~~~~~k~vlIlGaGG~arai~~aL~~~~-~i~I~nR~~~ka~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~dliIn~t 91 (177)
T d1nvta1 13 IGRVKDKNIVIYGAGGAARAVAFELAKDN-NIIIANRTVEKAEALAKEIAEKLNKKFGEEVKFSGLDVDLDGVDIIINAT 91 (177)
T ss_dssp HCCCCSCEEEEECCSHHHHHHHHHHTSSS-EEEEECSSHHHHHHHHHHHHHHHTCCHHHHEEEECTTCCCTTCCEEEECS
T ss_pred CCCcCCCEEEEECCcHHHHHHHHHHcccc-ceeeehhhhhHHHHHHHHHHHhhchhhhhhhhhhhhhhccchhhhhccCC
Confidence 45799999999999999999999998888 9999998742211 1111 1 12235666778899999999
Q ss_pred CCCcccc-ccccHHHHhcCCCCcEEEEcC
Q 006864 292 PLNPTTS-KIFNDETFAKMKKGVRIVNVA 319 (628)
Q Consensus 292 Plt~~t~-~li~~~~l~~mk~gailIN~a 319 (628)
|...... ..-..-.+..++++.+++++.
T Consensus 92 p~g~~~~~~~~~~~~~~~~~~~~~v~D~~ 120 (177)
T d1nvta1 92 PIGMYPNIDVEPIVKAEKLREDMVVMDLI 120 (177)
T ss_dssp CTTCTTCCSSCCSSCSTTCCSSSEEEECC
T ss_pred cccccccccccchhhhhccCcccceeeec
Confidence 9653211 110011233455666666654
|
| >d1u8sa2 d.58.18.5 (A:88-180) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: ACT-like family: Glycine cleavage system transcriptional repressor domain: putative transcriptional repressor VC2159 species: Vibrio cholerae [TaxId: 666]
Probab=96.13 E-value=0.0056 Score=50.19 Aligned_cols=32 Identities=13% Similarity=0.261 Sum_probs=28.8
Q ss_pred EEeccCCCCchhhHHhhhhcCCccccceEEee
Q 006864 562 LCRQVDQPGMIGKVGNILGEHNVNVNFMSVGR 593 (628)
Q Consensus 562 lv~~~D~PGvIa~V~~iL~~~~INIa~m~v~R 593 (628)
.+.-.|+||+++.|++.|+++|+||..++...
T Consensus 10 ~v~g~DrpGIV~~it~~la~~~~nI~~l~t~~ 41 (93)
T d1u8sa2 10 YVESDDKLGLTEKFTQFFAQRQIGMASLSAQT 41 (93)
T ss_dssp EEEESCCTTHHHHHHHHHHHTTCCEEEEEEEE
T ss_pred EEEECCCCCHHHHHHHHHHHcCCCchhhhccc
Confidence 45679999999999999999999999998754
|
| >d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]
Probab=96.10 E-value=0.0021 Score=58.33 Aligned_cols=95 Identities=15% Similarity=0.170 Sum_probs=60.9
Q ss_pred eecCCeEEEEecChhHHHHHHHHHcCCC--EEEEECCCCChhHHHHcCC---------c---ccCHHHHhccCCEEEEcC
Q 006864 226 SLVGKTLAVMGFGKVGSEVARRAKGLGM--NVIAHDPYAPADKARAVGV---------E---LVSFDQALATADFISLHM 291 (628)
Q Consensus 226 ~l~GktiGIIGlG~IG~~vA~~l~~~G~--~V~~~d~~~~~~~a~~~g~---------~---~~sl~ell~~aDvV~l~~ 291 (628)
.+..++|+|||.|++|..+|..+...|. ++..||......++..+.. . ...-.+.+++||+|+++.
T Consensus 17 ~~~~~KV~IIGaG~VG~~~A~~l~~~~l~~ElvLiD~~~~~a~g~alDl~h~~~~~~~~~~~~~~d~~~~~~adiVVitA 96 (160)
T d1i0za1 17 TVPNNKITVVGVGQVGMACAISILGKSLADELALVDVLEDKLKGEMMDLQHGSLFLQTPKIVADKDYSVTANSKIVVVTA 96 (160)
T ss_dssp CCCSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCCCSEEEECSSGGGGTTCSEEEECC
T ss_pred cCCCCeEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccchhHHHHHHHhccccccCCCeEEeccchhhcccccEEEEec
Confidence 3556899999999999999999998875 8999998643222211110 0 112346789999999976
Q ss_pred CCC--c-cccccc---cH-------HHHhcCCCCcEEEEcCC
Q 006864 292 PLN--P-TTSKIF---ND-------ETFAKMKKGVRIVNVAR 320 (628)
Q Consensus 292 Plt--~-~t~~li---~~-------~~l~~mk~gailIN~aR 320 (628)
-.. + +++--+ |. ..+....+.+++++++.
T Consensus 97 g~~~~~g~tR~~l~~~N~~i~~~i~~~i~~~~p~aiiivvtN 138 (160)
T d1i0za1 97 GVRQQEGESRLNLVQRNVNVFKFIIPQIVKYSPDCIIIVVSN 138 (160)
T ss_dssp SCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECSS
T ss_pred CCccccCcchHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeCC
Confidence 432 2 233211 11 22344577888998864
|
| >d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Biliverdin IX beta reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.02 E-value=0.0027 Score=58.84 Aligned_cols=66 Identities=17% Similarity=0.179 Sum_probs=49.0
Q ss_pred cCCeEEEEe-cChhHHHHHHHHHcCCCEEEEECCCCChhH-HHHcCCcc--------cCHHHHhccCCEEEEcCCC
Q 006864 228 VGKTLAVMG-FGKVGSEVARRAKGLGMNVIAHDPYAPADK-ARAVGVEL--------VSFDQALATADFISLHMPL 293 (628)
Q Consensus 228 ~GktiGIIG-lG~IG~~vA~~l~~~G~~V~~~d~~~~~~~-a~~~g~~~--------~sl~ell~~aDvV~l~~Pl 293 (628)
..|+|.|+| .|.||+.++++|...|++|.+++|...... ....+++. .+++++++.+|+|+.++..
T Consensus 2 ~~kkIlV~GatG~iG~~v~~~Ll~~g~~V~~~~R~~~~~~~~~~~~~~~~~gD~~d~~~l~~al~~~d~vi~~~g~ 77 (205)
T d1hdoa_ 2 AVKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSEGPRPAHVVVGDVLQAADVDKTVAGQDAVIVLLGT 77 (205)
T ss_dssp CCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGSCSSSCCCSEEEESCTTSHHHHHHHHTTCSEEEECCCC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEEcChhhcccccccccccccccccchhhHHHHhcCCCEEEEEecc
Confidence 468999999 799999999999999999999977542211 11223322 1467889999999988764
|
| >d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Probable oxidoreductase At4g09670 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=96.00 E-value=0.0046 Score=56.45 Aligned_cols=63 Identities=17% Similarity=0.219 Sum_probs=46.5
Q ss_pred eEEEEecChhHHHHHHHHHcC-CCEEEE-ECCCCCh--hHHHHcCC----c-ccCHHHHhc--cCCEEEEcCCC
Q 006864 231 TLAVMGFGKVGSEVARRAKGL-GMNVIA-HDPYAPA--DKARAVGV----E-LVSFDQALA--TADFISLHMPL 293 (628)
Q Consensus 231 tiGIIGlG~IG~~vA~~l~~~-G~~V~~-~d~~~~~--~~a~~~g~----~-~~sl~ell~--~aDvV~l~~Pl 293 (628)
++||||+|.+|+..++.++.. +++|.+ +|+.... ..+...++ . +.+++++++ +.|+|++++|-
T Consensus 3 ki~iIG~G~~g~~~~~~l~~~~~~~i~ai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~iD~v~I~tp~ 76 (184)
T d1ydwa1 3 RIGVMGCADIARKVSRAIHLAPNATISGVASRSLEKAKAFATANNYPESTKIHGSYESLLEDPEIDALYVPLPT 76 (184)
T ss_dssp EEEEESCCTTHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHTTCCTTCEEESSHHHHHHCTTCCEEEECCCG
T ss_pred EEEEEcCCHHHHHHHHHHHhCCCCEEEEEEeCCccccccchhccccccceeecCcHHHhhhccccceeeecccc
Confidence 799999999999999999876 678875 5776421 22344443 2 238999984 57999999983
|
| >d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain species: Escherichia coli [TaxId: 562]
Probab=95.99 E-value=0.0028 Score=50.65 Aligned_cols=34 Identities=26% Similarity=0.406 Sum_probs=32.2
Q ss_pred CeEEEEecChhHHHHHHHHHcCCCEEEEECCCCC
Q 006864 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAP 263 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~ 263 (628)
|||||+|-|..|+.++..++.+|.+++++||...
T Consensus 2 k~vgIlG~GQLgrMl~~Aa~~LG~~v~vldp~~~ 35 (78)
T d3etja2 2 KQVCVLGNGQLGRMLRQAGEPLGIAVWPVGLDAE 35 (78)
T ss_dssp EEEEEEBCSHHHHHHHHHHGGGTEEEEEECTTSC
T ss_pred CEEEEEcCCHHHHHHHHHHHHcCCEEEEEcCCCC
Confidence 7999999999999999999999999999999864
|
| >d1x7da_ c.2.1.13 (A:) Ornithine cyclodeaminase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Ornithine cyclodeaminase-like domain: Ornithine cyclodeaminase species: Pseudomonas putida [TaxId: 303]
Probab=95.92 E-value=0.008 Score=60.84 Aligned_cols=87 Identities=20% Similarity=0.304 Sum_probs=64.1
Q ss_pred CeEEEEecChhHHHHHHHHH-cCCC-EEEEECCCCCh--hHHHH----cCCcc--c-CHHHHhccCCEEEEcCCCCcccc
Q 006864 230 KTLAVMGFGKVGSEVARRAK-GLGM-NVIAHDPYAPA--DKARA----VGVEL--V-SFDQALATADFISLHMPLNPTTS 298 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~-~~G~-~V~~~d~~~~~--~~a~~----~g~~~--~-sl~ell~~aDvV~l~~Plt~~t~ 298 (628)
++++|||.|..++.-++.+. -++. +|.+||+.... ..+.. .|+.. + +++++++.||+|+++++ ++.+.
T Consensus 129 ~~l~iiG~G~QA~~~~~a~~~v~~i~~V~v~~r~~~~~~~~~~~l~~~~g~~v~~~~s~~eav~~ADIi~t~Ta-s~s~~ 207 (340)
T d1x7da_ 129 RKMALIGNGAQSEFQALAFHKHLGIEEIVAYDTDPLATAKLIANLKEYSGLTIRRASSVAEAVKGVDIITTVTA-DKAYA 207 (340)
T ss_dssp CEEEEECCSTTHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHTTCTTCEEEECSSHHHHHTTCSEEEECCC-CSSEE
T ss_pred ceEEEEcccHHHHHHHHHHhhhcceeeeEEEecChHHHHHHHHhhhhccCCCceecCCHHHHHhcCCceeeccc-cCCCC
Confidence 69999999999998888774 5664 79999987522 12222 24432 2 89999999999999886 34455
Q ss_pred ccccHHHHhcCCCCcEEEEcCC
Q 006864 299 KIFNDETFAKMKKGVRIVNVAR 320 (628)
Q Consensus 299 ~li~~~~l~~mk~gailIN~aR 320 (628)
.++..+ .+|||+.|..++.
T Consensus 208 Pv~~~~---~l~pG~hI~aiGs 226 (340)
T d1x7da_ 208 TIITPD---MLEPGMHLNAVGG 226 (340)
T ss_dssp EEECGG---GCCTTCEEEECSC
T ss_pred cccchh---hcCCCCEEeeccc
Confidence 677654 4699998888864
|
| >d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=95.91 E-value=0.0066 Score=55.86 Aligned_cols=64 Identities=19% Similarity=0.324 Sum_probs=43.1
Q ss_pred eEEEEecChhHHHHHHHHHcC-CCEEEEE-CCCCChhHH--HHc-----------------CCcc-cCHHHHhccCCEEE
Q 006864 231 TLAVMGFGKVGSEVARRAKGL-GMNVIAH-DPYAPADKA--RAV-----------------GVEL-VSFDQALATADFIS 288 (628)
Q Consensus 231 tiGIIGlG~IG~~vA~~l~~~-G~~V~~~-d~~~~~~~a--~~~-----------------g~~~-~sl~ell~~aDvV~ 288 (628)
+|||.|||+||+.++|.+... +++|++. |+....... ... ++.. -.+.+++.++|+|+
T Consensus 3 KVaINGfGRIGR~v~Ral~~~~dievVaInd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~g~~~~~~~~vDiVi 82 (178)
T d1b7go1 3 NVAVNGYGTIGKRVADAIIKQPDMKLVGVAKTSPNYEAFIAHRRGIRIYVPQQSIKKFEESGIPVAGTVEDLIKTSDIVV 82 (178)
T ss_dssp EEEEECCSHHHHHHHHHHHTCTTEEEEEEECSSCSHHHHHHHHTTCCEECCGGGHHHHHTTTCCCCCCHHHHHHHCSEEE
T ss_pred EEEEECCCHHHHHHHHHHHhCCCCEEEEEECCCCcHHHHHhcccCcceeccCccceeccccceecCCchhhhhhcCCEEE
Confidence 799999999999999999865 5888886 443322211 111 1111 15677778888888
Q ss_pred EcCCCC
Q 006864 289 LHMPLN 294 (628)
Q Consensus 289 l~~Plt 294 (628)
-|+|..
T Consensus 83 ecTG~f 88 (178)
T d1b7go1 83 DTTPNG 88 (178)
T ss_dssp ECCSTT
T ss_pred ECCCCc
Confidence 888743
|
| >d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=95.89 E-value=0.01 Score=52.46 Aligned_cols=90 Identities=17% Similarity=0.091 Sum_probs=57.7
Q ss_pred CeEEEEecChhHHHHHHHHHcCC--CEEEEECCCCChhHHHH---------cCC--c--ccCHHHHhccCCEEEEcCCCC
Q 006864 230 KTLAVMGFGKVGSEVARRAKGLG--MNVIAHDPYAPADKARA---------VGV--E--LVSFDQALATADFISLHMPLN 294 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~G--~~V~~~d~~~~~~~a~~---------~g~--~--~~sl~ell~~aDvV~l~~Plt 294 (628)
++|+|||.|++|..+|..+...| -++..||......+... ... . ..+-.+.+++||+|++..-..
T Consensus 1 MKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~alDl~~~~~~~~~~~~i~~~~d~~~~~~adiVvitag~~ 80 (142)
T d1ojua1 1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGADYSLLKGSEIIVVTAGLA 80 (142)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEEESCGGGGTTCSEEEECCCCC
T ss_pred CEEEEECcCHHHHHHHHHHHhcCcCceEEEEecccchhhHHHHHHhhhccccCCCCccccCCCHHHhccccEEEEecccc
Confidence 58999999999999999988655 48999997642222211 111 1 112247889999999987432
Q ss_pred cccccc-----c--c-------HHHHhcCCCCcEEEEcCC
Q 006864 295 PTTSKI-----F--N-------DETFAKMKKGVRIVNVAR 320 (628)
Q Consensus 295 ~~t~~l-----i--~-------~~~l~~mk~gailIN~aR 320 (628)
. +.++ + | ...+.+..|.+++++++.
T Consensus 81 ~-~~g~~r~~l~~~n~~i~~~i~~~i~~~~p~aivivvtN 119 (142)
T d1ojua1 81 R-KPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVTN 119 (142)
T ss_dssp C-CSSCCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECSS
T ss_pred C-CCCCchHHHHHHhhHHHHHHHHHHHhhCCCcEEEEecC
Confidence 2 2222 1 1 123445677899999875
|
| >d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Lactobacillus pentosus [TaxId: 1589]
Probab=95.84 E-value=0.0024 Score=56.94 Aligned_cols=92 Identities=15% Similarity=0.123 Sum_probs=55.9
Q ss_pred cCCeEEEEecChhHHHHHHHHHcCC--CEEEEECCCCChhHHHH--c-------CCc--cc-CHHHHhccCCEEEEcCCC
Q 006864 228 VGKTLAVMGFGKVGSEVARRAKGLG--MNVIAHDPYAPADKARA--V-------GVE--LV-SFDQALATADFISLHMPL 293 (628)
Q Consensus 228 ~GktiGIIGlG~IG~~vA~~l~~~G--~~V~~~d~~~~~~~a~~--~-------g~~--~~-sl~ell~~aDvV~l~~Pl 293 (628)
..++|+|||.|.+|..+|..|...| -++..||......+... + +.. .. +.+ .++.||+|+++...
T Consensus 4 ~~~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~~~~~~g~a~Dl~~a~~~~~~~~~~~~d~~-~~~~adivvitag~ 82 (146)
T d1ez4a1 4 NHQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYSGEYS-DCKDADLVVITAGA 82 (146)
T ss_dssp TBCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEEECCGG-GGTTCSEEEECCCC
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCcEEEEeecccchhHHHHHHHhccccccCCceEeeccHH-HhccccEEEEeccc
Confidence 3579999999999999999998666 58999997642211111 1 100 11 344 46899999997642
Q ss_pred Cc---ccccc-c--c-------HHHHhcCCCCcEEEEcCC
Q 006864 294 NP---TTSKI-F--N-------DETFAKMKKGVRIVNVAR 320 (628)
Q Consensus 294 t~---~t~~l-i--~-------~~~l~~mk~gailIN~aR 320 (628)
.. +++.- + | ...+..-.|.+++++++-
T Consensus 83 ~~~~g~~r~~l~~~N~~i~~~~~~~i~~~~p~aivivvtN 122 (146)
T d1ez4a1 83 PQKPGESRLDLVNKNLNILSSIVKPVVDSGFDGIFLVAAN 122 (146)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHTTCCSEEEECSS
T ss_pred ccCCCCCHHHHHHHHHHHHHHHHHHHhhcCCCcEEEEeCC
Confidence 21 11111 1 1 123445667888888873
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.78 E-value=0.0048 Score=55.07 Aligned_cols=87 Identities=22% Similarity=0.373 Sum_probs=58.9
Q ss_pred cCCeEEEEecChhHHHHHHHHHcCCCEEEEECCCC-ChhHHHHcCCccc------C----HHHHhccCCEEEEcCCCCcc
Q 006864 228 VGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA-PADKARAVGVELV------S----FDQALATADFISLHMPLNPT 296 (628)
Q Consensus 228 ~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~g~~~~------s----l~ell~~aDvV~l~~Plt~~ 296 (628)
.|.++.|+|.|.||...++.++..|.+|++.+... ..+.++++|+..+ + +.+.....|.++.+.+ .++
T Consensus 27 ~g~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~~~r~~~~k~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~ 105 (168)
T d1rjwa2 27 PGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKELGADLVVNPLKEDAAKFMKEKVGGVHAAVVTAV-SKP 105 (168)
T ss_dssp TTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCSEEECTTTSCHHHHHHHHHSSEEEEEESSC-CHH
T ss_pred CCCEEEEeecccchhhhhHHHhcCCCeEeccCCCHHHhhhhhhcCcceecccccchhhhhcccccCCCceEEeecC-CHH
Confidence 47899999999999999999999999999999765 3345667776422 1 2233344555555443 222
Q ss_pred ccccccHHHHhcCCCCcEEEEcC
Q 006864 297 TSKIFNDETFAKMKKGVRIVNVA 319 (628)
Q Consensus 297 t~~li~~~~l~~mk~gailIN~a 319 (628)
+ -...+..|+++..++.++
T Consensus 106 ~----~~~a~~~l~~~G~i~~~g 124 (168)
T d1rjwa2 106 A----FQSAYNSIRRGGACVLVG 124 (168)
T ss_dssp H----HHHHHHHEEEEEEEEECC
T ss_pred H----HHHHHHHhccCCceEecc
Confidence 2 245566677777777764
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=95.75 E-value=0.0045 Score=55.45 Aligned_cols=45 Identities=29% Similarity=0.466 Sum_probs=38.0
Q ss_pred cCCeEEEEecChhHHHHHHHHHcCCCEEEEECCCC-ChhHHHHcCC
Q 006864 228 VGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA-PADKARAVGV 272 (628)
Q Consensus 228 ~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~g~ 272 (628)
.|.++.|+|.|.||...++.++.+|.+|++.|+.. ..+.++++|+
T Consensus 27 ~g~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~~~~~~a~~~Ga 72 (166)
T d1llua2 27 PGQWVAISGIGGLGHVAVQYARAMGLHVAAIDIDDAKLELARKLGA 72 (166)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTC
T ss_pred CCCEEEEeeccccHHHHHHHHHHcCCccceecchhhHHHhhhccCc
Confidence 37899999999999999999999999999999875 3355666665
|
| >d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Haemophilus influenzae [TaxId: 727]
Probab=95.72 E-value=0.0089 Score=49.35 Aligned_cols=68 Identities=13% Similarity=0.243 Sum_probs=49.5
Q ss_pred cCCeEEEEecChhH-HHHHHHHHcCCCEEEEECCCCCh--hHHHHcCCccc--CHHHHhccCCEEEEcCCCCc
Q 006864 228 VGKTLAVMGFGKVG-SEVARRAKGLGMNVIAHDPYAPA--DKARAVGVELV--SFDQALATADFISLHMPLNP 295 (628)
Q Consensus 228 ~GktiGIIGlG~IG-~~vA~~l~~~G~~V~~~d~~~~~--~~a~~~g~~~~--sl~ell~~aDvV~l~~Plt~ 295 (628)
+.|++=|||.|.+| +++|+.|+..|++|.++|...+. ....+.|+... .-.+.+...|+|+..-...+
T Consensus 7 ~~~~ihfiGigG~GMs~LA~~L~~~G~~VsGSD~~~~~~~~~L~~~Gi~v~~g~~~~~i~~~d~vV~S~AI~~ 79 (96)
T d1p3da1 7 RVQQIHFIGIGGAGMSGIAEILLNEGYQISGSDIADGVVTQRLAQAGAKIYIGHAEEHIEGASVVVVSSAIKD 79 (96)
T ss_dssp TCCEEEEETTTSTTHHHHHHHHHHHTCEEEEEESCCSHHHHHHHHTTCEEEESCCGGGGTTCSEEEECTTSCT
T ss_pred hCCEEEEEEECHHHHHHHHHHHHhCCCEEEEEeCCCChhhhHHHHCCCeEEECCccccCCCCCEEEECCCcCC
Confidence 45899999999999 56699999999999999976533 34456676533 23344678898877544333
|
| >d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chloroflexus aurantiacus [TaxId: 1108]
Probab=95.71 E-value=0.005 Score=54.46 Aligned_cols=91 Identities=20% Similarity=0.284 Sum_probs=55.6
Q ss_pred CeEEEEecChhHHHHHHHHHcCCC-EEEEECCCCChhHHH--Hc-------C--Cc--ccCHHHHhccCCEEEEcCCC--
Q 006864 230 KTLAVMGFGKVGSEVARRAKGLGM-NVIAHDPYAPADKAR--AV-------G--VE--LVSFDQALATADFISLHMPL-- 293 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~~~~~a~--~~-------g--~~--~~sl~ell~~aDvV~l~~Pl-- 293 (628)
++|+|||.|.+|..+|..+...+. +++.+|......... ++ + .. ..+-.+.+++||+|+++...
T Consensus 2 ~KI~IIGaG~VG~~~A~~l~~~~l~dl~l~D~~~~~~~~~~~Dl~~~~~~~~~~~~i~~~~d~~~~~~advvvitag~~~ 81 (142)
T d1uxja1 2 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGTNNYADTANSDVIVVTSGAPR 81 (142)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCGGGGTTCSEEEECCSCC-
T ss_pred CeEEEECCCHHHHHHHHHHHhCCcceEEEEeeccccchhHHHHhhccccccCCCCEEEecCcHHHhcCCCEEEEeeeccC
Confidence 699999999999999998875554 899999876432221 11 1 11 11223457899999999853
Q ss_pred Cc-ccc-ccc--cH-------HHHhcCCCCcEEEEcCC
Q 006864 294 NP-TTS-KIF--ND-------ETFAKMKKGVRIVNVAR 320 (628)
Q Consensus 294 t~-~t~-~li--~~-------~~l~~mk~gailIN~aR 320 (628)
.+ +++ .++ |. ..+.+..|.++++.++.
T Consensus 82 ~~~~~r~dl~~~N~~i~~~i~~~i~k~~p~aivivvtN 119 (142)
T d1uxja1 82 KPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVNN 119 (142)
T ss_dssp --------CHHHHHHHHHHHHHHHGGGCTTCEEEECSS
T ss_pred CcCcchhHHHhHHHHHHHHHHHHHhccCCCceEEEeCC
Confidence 22 122 111 11 22334566888888753
|
| >d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.68 E-value=0.0032 Score=55.88 Aligned_cols=40 Identities=20% Similarity=0.248 Sum_probs=36.5
Q ss_pred ceeeecCCeEEEEecChhHHHHHHHHHcCCCEEEEECCCC
Q 006864 223 VGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA 262 (628)
Q Consensus 223 ~g~~l~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~ 262 (628)
...+|.||++.|||.|.+|.+-|+.|..+|++|.+++|..
T Consensus 7 l~~~l~gkrvLViGgG~va~~ka~~Ll~~GA~VtVvap~~ 46 (150)
T d1kyqa1 7 LAHQLKDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPDL 46 (150)
T ss_dssp EEECCTTCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEEE
T ss_pred hheeeCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 3568999999999999999999999999999999997754
|
| >d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Hypothetical protein TM0312 species: Thermotoga maritima [TaxId: 2336]
Probab=95.67 E-value=0.0073 Score=55.07 Aligned_cols=64 Identities=22% Similarity=0.367 Sum_probs=45.9
Q ss_pred CeEEEEecChhHHH-HHHHHHcCC--CEEE-EECCCCCh--hHHHHcCCc--ccCHHHHhc--cCCEEEEcCCC
Q 006864 230 KTLAVMGFGKVGSE-VARRAKGLG--MNVI-AHDPYAPA--DKARAVGVE--LVSFDQALA--TADFISLHMPL 293 (628)
Q Consensus 230 ktiGIIGlG~IG~~-vA~~l~~~G--~~V~-~~d~~~~~--~~a~~~g~~--~~sl~ell~--~aDvV~l~~Pl 293 (628)
.++||||+|.+|+. .+..++.++ +++. ++|+.... ..+...+.. +.+++++++ +.|+|++++|.
T Consensus 4 irigiIG~G~~g~~~h~~~l~~~~~~~~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~ell~~~~id~v~I~tp~ 77 (181)
T d1zh8a1 4 IRLGIVGCGIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAKMVGNPAVFDSYEELLESGLVDAVDLTLPV 77 (181)
T ss_dssp EEEEEECCSHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHHHHHHHHSSCEEESCHHHHHHSSCCSEEEECCCG
T ss_pred cEEEEEcCCHHHHHHHHHHHHhCCCCeEEEEEEeccHhhhhhhhccccccceeeeeeccccccccceeeccccc
Confidence 37999999999987 477787754 5776 46876422 223445654 348999986 47999999983
|
| >d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase-like protein HI0607 species: Haemophilus influenzae [TaxId: 727]
Probab=95.65 E-value=0.0074 Score=54.60 Aligned_cols=65 Identities=15% Similarity=0.128 Sum_probs=47.0
Q ss_pred cCCeEEEEecChhHHHHHHHHHcCCC-EEEEECCCCChh--HHHHcCCcccCHHHHhccCCEEEEcCCC
Q 006864 228 VGKTLAVMGFGKVGSEVARRAKGLGM-NVIAHDPYAPAD--KARAVGVELVSFDQALATADFISLHMPL 293 (628)
Q Consensus 228 ~GktiGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~~~~--~a~~~g~~~~sl~ell~~aDvV~l~~Pl 293 (628)
.+|++.|+|.|..|++++..|+..|+ +|..++|..... .+...+....+- .-..++|+|+.++|+
T Consensus 16 ~~~~vlIlGaGGaarai~~aL~~~g~~~I~I~nR~~~ka~~L~~~~~~~~~~~-~~~~~~DliINaTpi 83 (167)
T d1npya1 16 KNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNVKTGQYLAALYGYAYINS-LENQQADILVNVTSI 83 (167)
T ss_dssp TTSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCHHHHHHHHHHHTCEEESC-CTTCCCSEEEECSST
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCCEEEEecccHHHHHHHHHhhhhhhhhc-ccccchhhheecccc
Confidence 57899999999999999999999997 789999875321 123334433211 113578999998885
|
| >d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Methanothermus fervidus [TaxId: 2180]
Probab=95.42 E-value=0.0095 Score=54.40 Aligned_cols=65 Identities=29% Similarity=0.370 Sum_probs=41.4
Q ss_pred CeEEEEecChhHHHHHHHHHcCC-CEEEEEC-CCCChh--HHHHcCC------------------cc-cCHHHHhccCCE
Q 006864 230 KTLAVMGFGKVGSEVARRAKGLG-MNVIAHD-PYAPAD--KARAVGV------------------EL-VSFDQALATADF 286 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~G-~~V~~~d-~~~~~~--~a~~~g~------------------~~-~sl~ell~~aDv 286 (628)
++|||-|||+||+.+.+.+...+ ++|++.+ +..... .....++ .. -++.++++++|+
T Consensus 2 ~~VgINGfGRIGR~v~R~l~~~~di~vvaInd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~~vDv 81 (171)
T d1cf2o1 2 KAVAINGYGTVGKRVADAIAQQDDMKVIGVSKTRPDFEARMALKKGYDLYVAIPERVKLFEKAGIEVAGTVDDMLDEADI 81 (171)
T ss_dssp EEEEEECCSHHHHHHHHHHHTSSSEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHTTCCCCEEHHHHHHTCSE
T ss_pred eEEEEEcCcHHHHHHHHHHHhCCCceEEEEecCCcHHHHHHHHhcCCceEecccccceeecccCcccCCChhHhhcCCCE
Confidence 58999999999999999987654 7887753 332221 1112221 11 135566777888
Q ss_pred EEEcCCCC
Q 006864 287 ISLHMPLN 294 (628)
Q Consensus 287 V~l~~Plt 294 (628)
|+=|.|..
T Consensus 82 ViEcTG~f 89 (171)
T d1cf2o1 82 VIDCTPEG 89 (171)
T ss_dssp EEECCSTT
T ss_pred EEEccCCC
Confidence 77777744
|
| >d1omoa_ c.2.1.13 (A:) Archaeal alanine dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Ornithine cyclodeaminase-like domain: Archaeal alanine dehydrogenase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=95.41 E-value=0.016 Score=57.92 Aligned_cols=85 Identities=15% Similarity=0.222 Sum_probs=62.9
Q ss_pred CeEEEEecChhHHHHHHHHHc-CCC-EEEEECCCCChh-----HHHHcCCc-ccCHHHHhccCCEEEEcCCCCccccccc
Q 006864 230 KTLAVMGFGKVGSEVARRAKG-LGM-NVIAHDPYAPAD-----KARAVGVE-LVSFDQALATADFISLHMPLNPTTSKIF 301 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~-~G~-~V~~~d~~~~~~-----~a~~~g~~-~~sl~ell~~aDvV~l~~Plt~~t~~li 301 (628)
+++||||.|..++.-++.+.. +.. +|.+|++..... .....++. .++.++.+..||+|+.++| .+..++
T Consensus 126 ~~l~iiGaG~QA~~~~~al~~~~~i~~i~v~~r~~e~~~~~~~~~~~~~~~~~~~~~~a~~~aDiV~taT~---s~~P~~ 202 (320)
T d1omoa_ 126 SVFGFIGCGTQAYFQLEALRRVFDIGEVKAYDVREKAAKKFVSYCEDRGISASVQPAEEASRCDVLVTTTP---SRKPVV 202 (320)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHHHTTCCEEECCHHHHTSSSEEEECCC---CSSCCB
T ss_pred cEEEEecCcccHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHhcCCccccchhhhhccccEEEEecc---Cccccc
Confidence 689999999999999998864 564 899999875221 12233333 2367788899999999876 345677
Q ss_pred cHHHHhcCCCCcEEEEcCC
Q 006864 302 NDETFAKMKKGVRIVNVAR 320 (628)
Q Consensus 302 ~~~~l~~mk~gailIN~aR 320 (628)
..+ .+|+|+.++.++.
T Consensus 203 ~~~---~l~~G~hv~~iGs 218 (320)
T d1omoa_ 203 KAE---WVEEGTHINAIGA 218 (320)
T ss_dssp CGG---GCCTTCEEEECSC
T ss_pred chh---hcCCCCeEeecCC
Confidence 654 4799999998874
|
| >d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO) species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=95.41 E-value=0.0054 Score=54.59 Aligned_cols=33 Identities=24% Similarity=0.441 Sum_probs=30.6
Q ss_pred CeEEEE-ecChhHHHHHHHHHcCCCEEEEECCCC
Q 006864 230 KTLAVM-GFGKVGSEVARRAKGLGMNVIAHDPYA 262 (628)
Q Consensus 230 ktiGII-GlG~IG~~vA~~l~~~G~~V~~~d~~~ 262 (628)
+||+|| |.|.||+.+|++|...|++|..++|..
T Consensus 1 Mki~vigGaG~iG~alA~~la~~G~~V~l~~R~~ 34 (212)
T d1jaya_ 1 MRVALLGGTGNLGKGLALRLATLGHEIVVGSRRE 34 (212)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSH
T ss_pred CEEEEEeCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence 579999 899999999999999999999999864
|
| >d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Haemophilus influenzae [TaxId: 727]
Probab=95.35 E-value=0.0057 Score=55.67 Aligned_cols=71 Identities=15% Similarity=0.129 Sum_probs=49.2
Q ss_pred eeeecCCeEEEEecChhHHHHHHHHHcCCCEEEEECCCCChh--HHHHcC----CcccCHHH-HhccCCEEEEcCCCC
Q 006864 224 GVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPAD--KARAVG----VELVSFDQ-ALATADFISLHMPLN 294 (628)
Q Consensus 224 g~~l~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~--~a~~~g----~~~~sl~e-ll~~aDvV~l~~Plt 294 (628)
+..+.||++.|+|.|..+++++..|...+.+|..++|..... .+...+ +...+.++ .+.++|+|+.++|..
T Consensus 13 ~~~~~~k~vlIlGaGGaarai~~aL~~~~~~i~I~nR~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~diiIN~tp~g 90 (171)
T d1p77a1 13 NWLRPNQHVLILGAGGATKGVLLPLLQAQQNIVLANRTFSKTKELAERFQPYGNIQAVSMDSIPLQTYDLVINATSAG 90 (171)
T ss_dssp TCCCTTCEEEEECCSHHHHTTHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGSCEEEEEGGGCCCSCCSEEEECCCC-
T ss_pred CCCCCCCEEEEECCcHHHHHHHHHHcccCceeeeccchHHHHHHHHHHHhhccccchhhhccccccccceeeeccccc
Confidence 346889999999999999999999988788999999874221 111111 11222222 356788888888855
|
| >d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=95.32 E-value=0.014 Score=51.60 Aligned_cols=95 Identities=17% Similarity=0.235 Sum_probs=61.8
Q ss_pred CeEEEEe-cChhHHHHHHHHHcCCC--EEEEECCCCChhHHHHcCC-----------cccCHHHHhccCCEEEEcCCC--
Q 006864 230 KTLAVMG-FGKVGSEVARRAKGLGM--NVIAHDPYAPADKARAVGV-----------ELVSFDQALATADFISLHMPL-- 293 (628)
Q Consensus 230 ktiGIIG-lG~IG~~vA~~l~~~G~--~V~~~d~~~~~~~a~~~g~-----------~~~sl~ell~~aDvV~l~~Pl-- 293 (628)
.+|+||| .|.+|+.+|..+...|. ++..+|.......+.++.. ...+..+.++.||+|+++.-.
T Consensus 1 sKv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~~~~~~a~Dl~~~~~~~~~~~~~~~~~~~~~~~~aDivVitag~~~ 80 (144)
T d1mlda1 1 AKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGYLGPEQLPDCLKGCDVVVIPAGVPR 80 (144)
T ss_dssp CEEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSHHHHHHHHTTSSSSCEEEEEESGGGHHHHHTTCSEEEECCSCCC
T ss_pred CeEEEECCCChHHHHHHHHHHhCCccceEEEEeccccchhhHHHhhhhhhcCCCeEEcCCChHHHhCCCCEEEECCCcCC
Confidence 4799999 59999999999997775 7889997643333333321 012567889999999997552
Q ss_pred Cc-cccc-cc--cH-------HHHhcCCCCcEEEEcCCCchhcH
Q 006864 294 NP-TTSK-IF--ND-------ETFAKMKKGVRIVNVARGGVIDE 326 (628)
Q Consensus 294 t~-~t~~-li--~~-------~~l~~mk~gailIN~aRg~~vde 326 (628)
.+ ++|. ++ |. +.+....|.++++.++ ..+|.
T Consensus 81 ~~g~sR~~ll~~N~~i~~~i~~~i~~~~p~~iiivvt--NPvD~ 122 (144)
T d1mlda1 81 KPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIIS--NPVNS 122 (144)
T ss_dssp CTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECS--SCHHH
T ss_pred CCCCCcchHHHHHHHHHHHHHHHHHhcCCCeEEEEec--Cchhh
Confidence 22 2221 11 11 2334457889999986 45554
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=95.31 E-value=0.0066 Score=54.99 Aligned_cols=45 Identities=27% Similarity=0.328 Sum_probs=35.5
Q ss_pred cCCeEEEEecChhHHHHHHHHHcCCCEE-EEECCCC-ChhHHHHcCC
Q 006864 228 VGKTLAVMGFGKVGSEVARRAKGLGMNV-IAHDPYA-PADKARAVGV 272 (628)
Q Consensus 228 ~GktiGIIGlG~IG~~vA~~l~~~G~~V-~~~d~~~-~~~~a~~~g~ 272 (628)
.|.++.|+|.|.||...++.++.+|.++ ++.|+.. ..+.++++|+
T Consensus 28 ~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~~Ga 74 (174)
T d1f8fa2 28 PASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGA 74 (174)
T ss_dssp TTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTC
T ss_pred CCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHHcCC
Confidence 4789999999999999999999999854 5567654 3355666675
|
| >d2qmwa2 d.58.18.3 (A:185-264) Prephenate dehydratase C-terminal domain {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: ACT-like family: Phenylalanine metabolism regulatory domain domain: Prephenate dehydratase C-terminal domain species: Staphylococcus aureus [TaxId: 1280]
Probab=95.30 E-value=0.023 Score=45.21 Aligned_cols=61 Identities=18% Similarity=0.250 Sum_probs=45.2
Q ss_pred EEEeccCCCCchhhHHhhhhcCCccccceEEeee-ecCccEEEEEEeCCCCCHHHHHHHhcc
Q 006864 561 ILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRT-FRRNHGIMAIGVDEEPNQDSLKEIGKV 621 (628)
Q Consensus 561 Llv~~~D~PGvIa~V~~iL~~~~INIa~m~v~R~-~~gg~Al~~i~vD~~~~~~~l~~L~~l 621 (628)
+++...|+||.+..+.+.++++|||+..++---. ..-++..-.++++....+.+.+.|+++
T Consensus 5 ~i~~~~d~pGaL~~vL~~F~~~~INLt~IeSRP~~~~~~~Y~F~id~~g~~~~~~~~~l~~L 66 (80)
T d2qmwa2 5 LITPMHDKPGLLASVLNTFALFNINLSWIESRPLKTQLGMYRFFVQADSAITTDIKKVIAIL 66 (80)
T ss_dssp EEEESSCCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTCEEEEEEESCCSCHHHHHHHHHH
T ss_pred EEEeCCCCCCHHHHHHHHHHHCCCCEEEEEeeecCCCCceEEEEEEEecCCcHHHHHHHHHH
Confidence 4556789999999999999999999999986322 233567788999887766544444443
|
| >d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glucose-fructose oxidoreductase, N-terminal domain species: Zymomonas mobilis [TaxId: 542]
Probab=95.19 E-value=0.0083 Score=56.72 Aligned_cols=63 Identities=21% Similarity=0.255 Sum_probs=45.3
Q ss_pred CeEEEEecChhHHH-HHHHHHcC-CCEEE-EECCCCC--hhHHHHcCCc------ccCHHHHhc--cCCEEEEcCC
Q 006864 230 KTLAVMGFGKVGSE-VARRAKGL-GMNVI-AHDPYAP--ADKARAVGVE------LVSFDQALA--TADFISLHMP 292 (628)
Q Consensus 230 ktiGIIGlG~IG~~-vA~~l~~~-G~~V~-~~d~~~~--~~~a~~~g~~------~~sl~ell~--~aDvV~l~~P 292 (628)
-+|||||+|.+|+. +...++.. +++|. ++|++.. ...++..++. +.++++++. +.|+|++++|
T Consensus 34 iriaiIG~G~~~~~~~~~~~~~~~~~~ivav~d~~~~~a~~~~~~~~i~~~~~~~~~d~~ell~~~~iD~V~I~tp 109 (221)
T d1h6da1 34 FGYAIVGLGKYALNQILPGFAGCQHSRIEALVSGNAEKAKIVAAEYGVDPRKIYDYSNFDKIAKDPKIDAVYIILP 109 (221)
T ss_dssp EEEEEECCSHHHHHTHHHHTTTCSSEEEEEEECSCHHHHHHHHHHTTCCGGGEECSSSGGGGGGCTTCCEEEECSC
T ss_pred EEEEEEcCcHHHHHHHHHHHHhCCCceEEEEecCCHHHHHHHHHhhccccccccccCchhhhcccccceeeeeccc
Confidence 48999999999974 66666655 67877 4687642 2233445542 347899986 5899999998
|
| >d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]
Probab=95.19 E-value=0.0074 Score=53.52 Aligned_cols=89 Identities=19% Similarity=0.200 Sum_probs=55.8
Q ss_pred CeEEEEecChhHHHHHHHHHcCCC--EEEEECCCCChhHHH--Hc--C-----C-c--ccCHHHHhccCCEEEEcCCCCc
Q 006864 230 KTLAVMGFGKVGSEVARRAKGLGM--NVIAHDPYAPADKAR--AV--G-----V-E--LVSFDQALATADFISLHMPLNP 295 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~G~--~V~~~d~~~~~~~a~--~~--g-----~-~--~~sl~ell~~aDvV~l~~Plt~ 295 (628)
.+|+|||.|++|..+|..+...|. ++..+|......+.. ++ . . . ..+-.+.+++||+|+++.-..
T Consensus 2 ~Ki~IIGaG~VG~~~a~~l~~~~l~~ElvL~D~~~~~~~g~a~Dl~~a~~~~~~~~i~~~~~~~~~~daDvVVitaG~~- 80 (143)
T d1llda1 2 TKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGSDDPEICRDADMVVITAGPR- 80 (143)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTGGGSTTCEEEEESCGGGGTTCSEEEECCCCC-
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccccchhHHHHHHhccccCCCceeecCCCHHHhhCCcEEEEecccc-
Confidence 479999999999999999876664 899999764322211 11 1 0 1 112235688999999976422
Q ss_pred cccccc-------cH-------HHHhcCCCCcEEEEcC
Q 006864 296 TTSKIF-------ND-------ETFAKMKKGVRIVNVA 319 (628)
Q Consensus 296 ~t~~li-------~~-------~~l~~mk~gailIN~a 319 (628)
...++- |. ..+....|.++++.++
T Consensus 81 ~~~g~~R~dl~~~N~~i~~~i~~~i~~~~p~ai~ivvt 118 (143)
T d1llda1 81 QKPGQSRLELVGATVNILKAIMPNLVKVAPNAIYMLIT 118 (143)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECC
T ss_pred cCCCCchhhhhhhhHHHHHHHHHHHHhhCCCeEEEEeC
Confidence 212211 11 2344557788888886
|
| >d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.19 E-value=0.0063 Score=55.00 Aligned_cols=95 Identities=15% Similarity=0.149 Sum_probs=59.6
Q ss_pred eecCCeEEEEecChhHHHHHHHHHcCCC--EEEEECCCCChhHHH--Hc-------CCc---ccCHHHHhccCCEEEEcC
Q 006864 226 SLVGKTLAVMGFGKVGSEVARRAKGLGM--NVIAHDPYAPADKAR--AV-------GVE---LVSFDQALATADFISLHM 291 (628)
Q Consensus 226 ~l~GktiGIIGlG~IG~~vA~~l~~~G~--~V~~~d~~~~~~~a~--~~-------g~~---~~sl~ell~~aDvV~l~~ 291 (628)
.+...+|+|||.|.+|..+|..|...|. ++..||......... ++ +.. ..+-.+.++.||+|+++.
T Consensus 16 ~~~~~KI~IIGaG~VG~~~A~~l~~~~l~~elvL~D~~~~~a~g~alDl~~~~~~~~~~~~~~~~d~~~~~~adivvita 95 (159)
T d2ldxa1 16 KLSRCKITVVGVGDVGMACAISILLKGLADELALVDADTDKLRGEALDLQHGSLFLSTPKIVFGKDYNVSANSKLVIITA 95 (159)
T ss_dssp CCCCCEEEEECCSHHHHHHHHHHHTTTSCSEEEEECSCHHHHHHHHHHHHHTTTTCSCCEEEEESSGGGGTTEEEEEECC
T ss_pred cCCCCeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCchhhhccHHHHhCcchhcCCCeEEeccchhhhccccEEEEec
Confidence 3455689999999999999999987774 899999764222211 11 111 112245668999999876
Q ss_pred CC--Cc-cccc-cc--cHHH-------HhcCCCCcEEEEcCC
Q 006864 292 PL--NP-TTSK-IF--NDET-------FAKMKKGVRIVNVAR 320 (628)
Q Consensus 292 Pl--t~-~t~~-li--~~~~-------l~~mk~gailIN~aR 320 (628)
-. .+ +++. ++ |.+. +....+.+++++++.
T Consensus 96 g~~~~~~~~R~dll~~N~~i~~~i~~~i~~~~p~~ivivvtN 137 (159)
T d2ldxa1 96 GARMVSGQTRLDLLQRNVAIMKAIVPGVIQNSPDCKIIVVTN 137 (159)
T ss_dssp SCCCCTTTCSSCTTHHHHHHHHHHTTTHHHHSTTCEEEECSS
T ss_pred ccccCCCCCHHHHHHHHHHHHHHHHHHHhccCCCeEEEEeCC
Confidence 42 22 2321 12 2222 334578889999874
|
| >d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Thermotoga maritima [TaxId: 2336]
Probab=95.08 E-value=0.019 Score=46.67 Aligned_cols=64 Identities=16% Similarity=0.227 Sum_probs=47.3
Q ss_pred CeEEEEecChhHH-HHHHHHHcCCCEEEEECCCCCh--hHHHHcCCccc--CHHHHhccCCEEEEcCCC
Q 006864 230 KTLAVMGFGKVGS-EVARRAKGLGMNVIAHDPYAPA--DKARAVGVELV--SFDQALATADFISLHMPL 293 (628)
Q Consensus 230 ktiGIIGlG~IG~-~vA~~l~~~G~~V~~~d~~~~~--~~a~~~g~~~~--sl~ell~~aDvV~l~~Pl 293 (628)
++|=|||.|.+|. .+|+.|+..|++|.++|...+. +..++.|++.. .-.+-+..+|+|+..--.
T Consensus 2 ~~ihfiGIgG~GMs~LA~~L~~~G~~VsGSD~~~~~~t~~L~~~Gi~i~~gh~~~~i~~~d~vV~SsAI 70 (89)
T d1j6ua1 2 MKIHFVGIGGIGMSAVALHEFSNGNDVYGSNIEETERTAYLRKLGIPIFVPHSADNWYDPDLVIKTPAV 70 (89)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEECSSCCHHHHHHHHTTCCEESSCCTTSCCCCSEEEECTTC
T ss_pred cEEEEEeECHHHHHHHHHHHHhCCCeEEEEeCCCChhHHHHHHCCCeEEeeecccccCCCCEEEEecCc
Confidence 5788999999998 7899999999999999987543 34566777542 123445778988775433
|
| >d1otha2 c.78.1.1 (A:185-354) Ornithine transcarbamoylase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Ornithine transcarbamoylase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.99 E-value=0.087 Score=47.20 Aligned_cols=94 Identities=18% Similarity=0.159 Sum_probs=64.6
Q ss_pred eecCCeEEEEecCh-hHHHHHHHHHcCCCEEEEECCCC--Ch-h-------HHHHcCCc---ccCHHHHhccCCEEEEcC
Q 006864 226 SLVGKTLAVMGFGK-VGSEVARRAKGLGMNVIAHDPYA--PA-D-------KARAVGVE---LVSFDQALATADFISLHM 291 (628)
Q Consensus 226 ~l~GktiGIIGlG~-IG~~vA~~l~~~G~~V~~~d~~~--~~-~-------~a~~~g~~---~~sl~ell~~aDvV~l~~ 291 (628)
.|.|+||++||=|+ +-.+++..+..|||++....|.. +. + ...+.|.. ..++++.+..+|+|..-.
T Consensus 1 sl~gl~I~~vGD~~nV~~Sli~~~~~~g~~~~~~~P~~~~p~~~~~~~~~~~~~~~~~~i~~~~d~~~~~~~advi~~~~ 80 (170)
T d1otha2 1 SLKGLTLSWIGDGNNILHSIMMSAAKFGMHLQAATPKGYEPDASVTKLAEQYAKENGTKLLLTNDPLEAAHGGNVLITDT 80 (170)
T ss_dssp CCTTCEEEEESCSSHHHHHHHTTTGGGTCEEEEECCTTCCCCHHHHHHHHHHHHHHTCCEEEESCHHHHHTTCSEEEECC
T ss_pred CCCCCEEEEEcCchhHHHHHHHHHHHcCCEEEEEeccccCCchHHHHHHHHHHhccCCEEEEEcCHHHHHhhhhheeeec
Confidence 37899999999763 44666667778999999987642 11 1 12223432 237999999999999866
Q ss_pred CCCcc------------ccccccHHHHhcCCCCcEEEEcC
Q 006864 292 PLNPT------------TSKIFNDETFAKMKKGVRIVNVA 319 (628)
Q Consensus 292 Plt~~------------t~~li~~~~l~~mk~gailIN~a 319 (628)
..... ....++.+.++.+|++++|.-|.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~MHpl 120 (170)
T d1otha2 81 WISMGREEEKKKRLQAFQGYQVTMKTAKVAASDWTFLHCL 120 (170)
T ss_dssp SSCTTCGGGHHHHHHHTTTCCBCHHHHHTSCTTCEEEECS
T ss_pred eecccchhhhHHHHHHHhhhhhhhhhhhccCCceEEecCC
Confidence 54322 12345677788888888888874
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.97 E-value=0.03 Score=50.29 Aligned_cols=46 Identities=20% Similarity=0.341 Sum_probs=37.0
Q ss_pred cCCeEEEEec-ChhHHHHHHHHHcCCCEEEEECCCC-ChhHHHHcCCc
Q 006864 228 VGKTLAVMGF-GKVGSEVARRAKGLGMNVIAHDPYA-PADKARAVGVE 273 (628)
Q Consensus 228 ~GktiGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~g~~ 273 (628)
.|.+|.|.|. |.+|....+.++.+|++|++.+... ..+.++++|+.
T Consensus 28 ~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~~~~~~~~~~Ga~ 75 (174)
T d1yb5a2 28 AGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVLQNGAH 75 (174)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCS
T ss_pred CCCEEEEEeccccccccccccccccCcccccccccccccccccccCcc
Confidence 5789999995 9999999999999999999987653 23455666653
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=94.87 E-value=0.059 Score=48.71 Aligned_cols=46 Identities=37% Similarity=0.421 Sum_probs=38.7
Q ss_pred cCCeEEEEecChhHHHHHHHHHcCCC-EEEEECCCC-ChhHHHHcCCc
Q 006864 228 VGKTLAVMGFGKVGSEVARRAKGLGM-NVIAHDPYA-PADKARAVGVE 273 (628)
Q Consensus 228 ~GktiGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~-~~~~a~~~g~~ 273 (628)
.|.++.|+|.|.||...++.++.+|. +|++.|+.. ..+.++++|..
T Consensus 28 ~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~~Ga~ 75 (174)
T d1e3ia2 28 PGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGAT 75 (174)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCS
T ss_pred CCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHHhCCC
Confidence 57899999999999999999999998 688889875 44567777753
|
| >d1pvva2 c.78.1.1 (A:151-313) Ornithine transcarbamoylase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Ornithine transcarbamoylase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=94.86 E-value=0.098 Score=46.72 Aligned_cols=94 Identities=20% Similarity=0.255 Sum_probs=65.6
Q ss_pred eecCCeEEEEecC-hhHHHHHHHHHcCCCEEEEECCCC--C-hhH---HHH----cC--Cc-ccCHHHHhccCCEEEEcC
Q 006864 226 SLVGKTLAVMGFG-KVGSEVARRAKGLGMNVIAHDPYA--P-ADK---ARA----VG--VE-LVSFDQALATADFISLHM 291 (628)
Q Consensus 226 ~l~GktiGIIGlG-~IG~~vA~~l~~~G~~V~~~d~~~--~-~~~---a~~----~g--~~-~~sl~ell~~aDvV~l~~ 291 (628)
.|.|++|++||=| ++..+++..+..||+++....|.. + .+. .+. .+ ++ ..++++.++.||+|..-.
T Consensus 1 sl~gl~Ia~VGD~~nv~~Sli~~l~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ea~~~adviy~~~ 80 (163)
T d1pvva2 1 TIKGVKVVYVGDGNNVAHSLMIAGTKLGADVVVATPEGYEPDEKVIKWAEQNAAESGGSFELLHDPVKAVKDADVIYTDV 80 (163)
T ss_dssp CCTTCEEEEESCCCHHHHHHHHHHHHTTCEEEEECCTTCCCCHHHHHHHHHHHHHHTCEEEEESCHHHHTTTCSEEEECC
T ss_pred CcCCCEEEEECCCcHHHHHHHHHHHHcCCeEEEecccccCCChHHHHHHHHhhhcccceEEEecCHHHHhhhccEEeecc
Confidence 3789999999975 467888999999999999998753 2 211 111 11 12 238999999999998643
Q ss_pred CCC----cc--------ccccccHHHHhcCCCCcEEEEcC
Q 006864 292 PLN----PT--------TSKIFNDETFAKMKKGVRIVNVA 319 (628)
Q Consensus 292 Plt----~~--------t~~li~~~~l~~mk~gailIN~a 319 (628)
=.. .+ ....++.+.++++|++++|.-|.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~y~v~~~~l~~ak~~~iimHpl 120 (163)
T d1pvva2 81 WASMGQEAEAEERRKIFRPFQVNKDLVKHAKPDYMFMHCL 120 (163)
T ss_dssp CCCSSTTSSSSHHHHHHGGGCBCHHHHHTSCTTCEEEECS
T ss_pred eeecccchhhHHHHHHhhhhhHHHHHHHhhCCCeEEecCC
Confidence 111 11 12456788888889999888875
|
| >d1lc0a1 c.2.1.3 (A:2-128,A:247-291) Biliverdin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Biliverdin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=94.82 E-value=0.003 Score=57.26 Aligned_cols=60 Identities=23% Similarity=0.293 Sum_probs=40.6
Q ss_pred eEEEEecChhHHHHHHHHHcCC----CEEEEECCCCChhHHHHcCCcccCHHHHhc--cCCEEEEcCC
Q 006864 231 TLAVMGFGKVGSEVARRAKGLG----MNVIAHDPYAPADKARAVGVELVSFDQALA--TADFISLHMP 292 (628)
Q Consensus 231 tiGIIGlG~IG~~vA~~l~~~G----~~V~~~d~~~~~~~a~~~g~~~~sl~ell~--~aDvV~l~~P 292 (628)
+|||||+|.+|+..++.++... ..+...+... ......+....++++++. +.|+|++++|
T Consensus 9 kv~iIG~G~~g~~h~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~e~l~~~~iD~V~I~tp 74 (172)
T d1lc0a1 9 GVVVVGVGRAGSVRLRDLKDPRSAAFLNLIGFVSRR--ELGSLDEVRQISLEDALRSQEIDVAYICSE 74 (172)
T ss_dssp EEEEECCSHHHHHHHHHHTSHHHHTTEEEEEEECSS--CCCEETTEEBCCHHHHHHCSSEEEEEECSC
T ss_pred EEEEEcCCHHHHHHHHHHHhCCCCcEEEEEeccchH--HHHHhhccCcCCHHHHHhCCCcchhhhccc
Confidence 7999999999999888887543 3344332221 111122344568999986 5688999998
|
| >d1pg5a2 c.78.1.1 (A:147-299) Aspartate carbamoyltransferase catalytic subunit {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Aspartate carbamoyltransferase catalytic subunit species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=94.75 E-value=0.049 Score=48.29 Aligned_cols=93 Identities=13% Similarity=0.078 Sum_probs=61.0
Q ss_pred ecCCeEEEEec---ChhHHHHHHHHHcCCCEEEEECC-CC---ChhHHHHcCCcc---cCHHHHhccCCEEEEcCCCCcc
Q 006864 227 LVGKTLAVMGF---GKVGSEVARRAKGLGMNVIAHDP-YA---PADKARAVGVEL---VSFDQALATADFISLHMPLNPT 296 (628)
Q Consensus 227 l~GktiGIIGl---G~IG~~vA~~l~~~G~~V~~~d~-~~---~~~~a~~~g~~~---~sl~ell~~aDvV~l~~Plt~~ 296 (628)
|.|++|+|||= |++..+++..+..||++++.+-| .. ........+... .++++.++.+|+|..----...
T Consensus 1 l~gl~i~~vGD~~~sRv~~Sl~~~l~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~d~~eai~~aDvvy~~~~q~~~ 80 (153)
T d1pg5a2 1 IDGLVFALLGDLKYARTVNSLLRILTRFRPKLVYLISPQLLRARKEILDELNYPVKEVENPFEVINEVDVLYVTRIQKER 80 (153)
T ss_dssp STTCEEEEEECCSSCHHHHHHHHHGGGSCCSEEEEECCGGGCCCHHHHTTCCSCEEEESCGGGTGGGCSEEEEECCCSTT
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHHHcCCeeEEEecccccccchhhcccCCCeEEEEeCHHHHhhcCCeEEEeeeeehh
Confidence 57999999997 55999999999999998655433 21 122223334332 2799999999999753211100
Q ss_pred -----------ccccccHHHHhcCCCCcEEEEcC
Q 006864 297 -----------TSKIFNDETFAKMKKGVRIVNVA 319 (628)
Q Consensus 297 -----------t~~li~~~~l~~mk~gailIN~a 319 (628)
....++.+.++.+|++++|.-|.
T Consensus 81 ~~~~~~~~~~~~~y~v~~~~l~~~~~~~i~mH~L 114 (153)
T d1pg5a2 81 FVDEMEYEKIKGSYIVSLDLANKMKKDSIILHPL 114 (153)
T ss_dssp SSCHHHHHHHGGGGSBCHHHHHTSCTTCEEECCS
T ss_pred ccchhHHHHHHHhhhhhHHHHhccCCCeEEecCC
Confidence 11235667777777777777774
|
| >d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=94.73 E-value=0.024 Score=51.66 Aligned_cols=30 Identities=27% Similarity=0.454 Sum_probs=24.9
Q ss_pred CeEEEEecChhHHHHHHHHHcC-CCEEEEEC
Q 006864 230 KTLAVMGFGKVGSEVARRAKGL-GMNVIAHD 259 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~-G~~V~~~d 259 (628)
.+|||.|||+||+.+++.+... .++|++.+
T Consensus 3 irIaINGfGRIGR~v~Ral~~~~dieiVaIN 33 (172)
T d2czca2 3 VKVGVNGYGTIGKRVAYAVTKQDDMELIGIT 33 (172)
T ss_dssp EEEEEECCSHHHHHHHHHHHTCTTEEEEEEE
T ss_pred EEEEEECCCHHHHHHHHHHHhCCCceEEEEe
Confidence 4899999999999999998754 47877653
|
| >d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Thermus thermophilus [TaxId: 274]
Probab=94.69 E-value=0.011 Score=53.36 Aligned_cols=85 Identities=20% Similarity=0.337 Sum_probs=54.2
Q ss_pred cCCeEEEEec-ChhHHHHHHHHHcCCCEEEEECCCC-ChhHHHHcCCccc-CHHH------HhccCCEEEEcCCCCcccc
Q 006864 228 VGKTLAVMGF-GKVGSEVARRAKGLGMNVIAHDPYA-PADKARAVGVELV-SFDQ------ALATADFISLHMPLNPTTS 298 (628)
Q Consensus 228 ~GktiGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~g~~~~-sl~e------ll~~aDvV~l~~Plt~~t~ 298 (628)
.|+++.|.|. |.+|+...+.++.+|++|++.+... ..+.++++|+..+ +..+ ....+|+|+-+.. + +
T Consensus 27 ~g~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~~g~D~v~d~~G--~-~- 102 (171)
T d1iz0a2 27 PGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPLALGAEEAATYAEVPERAKAWGGLDLVLEVRG--K-E- 102 (171)
T ss_dssp TTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHHHTTCSEEEEGGGHHHHHHHTTSEEEEEECSC--T-T-
T ss_pred CCCEEEEEeccccchhhhhhhhcccccccccccccccccccccccccceeeehhhhhhhhhccccccccccccc--h-h-
Confidence 4789999995 9999999999999999999987654 3455677776422 1111 1233566655432 1 1
Q ss_pred ccccHHHHhcCCCCcEEEEcC
Q 006864 299 KIFNDETFAKMKKGVRIVNVA 319 (628)
Q Consensus 299 ~li~~~~l~~mk~gailIN~a 319 (628)
-...++.++++..++.++
T Consensus 103 ---~~~~~~~l~~~G~~v~~G 120 (171)
T d1iz0a2 103 ---VEESLGLLAHGGRLVYIG 120 (171)
T ss_dssp ---HHHHHTTEEEEEEEEEC-
T ss_pred ---HHHHHHHHhcCCcEEEEe
Confidence 134455666666666654
|
| >d1dlja3 c.26.3.1 (A:295-402) UDP-glucose dehydrogenase (UDPGDH), C-terminal (UDP-binding) domain {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain family: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain domain: UDP-glucose dehydrogenase (UDPGDH), C-terminal (UDP-binding) domain species: Streptococcus pyogenes [TaxId: 1314]
Probab=94.64 E-value=0.018 Score=48.45 Aligned_cols=61 Identities=16% Similarity=0.147 Sum_probs=46.4
Q ss_pred CCeEEEEec----------ChhHHHHHHHHHcCCCEEEEECCCCChhHHHHcCCccc-CHHHHhccCCEEEEc
Q 006864 229 GKTLAVMGF----------GKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELV-SFDQALATADFISLH 290 (628)
Q Consensus 229 GktiGIIGl----------G~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~-sl~ell~~aDvV~l~ 290 (628)
.|+|||+|+ ..-.-.+.+.|+..|++|.+|||+..... ...+...+ ++++++..||+|++.
T Consensus 15 ~k~I~ilGl~fK~n~dD~R~Sp~i~ii~~L~~~g~~v~iyDP~v~~~~-~~~~~~~~~~l~~~~~~sDiII~~ 86 (108)
T d1dlja3 15 VKVVGVYRLIMKSNSDNFRESAIKDVIDILKSKDIKIIIYEPMLNKLE-SEDQSVLVNDLENFKKQANIIVTN 86 (108)
T ss_dssp SCEEEEECCCSSTTCSCCTTCHHHHHHHHHHTSSCEEEEECTTCSCCC-TTCCSEECCCHHHHHHHCSEEECS
T ss_pred CCEEEEEEEEECCCCcchhhhhHHHHHHHHhccccceeeecCCcChhH-hccCCEEEeCHHHHHhhCCEEEEc
Confidence 368999998 45667899999999999999999985322 12333333 899999999987653
|
| >d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: 6-phospho-beta-glucosidase species: Thermotoga maritima [TaxId: 2336]
Probab=94.26 E-value=0.064 Score=47.99 Aligned_cols=111 Identities=14% Similarity=0.066 Sum_probs=65.7
Q ss_pred CeEEEEecChhHHHHHHH--HHc---C-CCEEEEECCCCChhH-HHH-------cCCc---ccCHHHHhccCCEEEEcCC
Q 006864 230 KTLAVMGFGKVGSEVARR--AKG---L-GMNVIAHDPYAPADK-ARA-------VGVE---LVSFDQALATADFISLHMP 292 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~--l~~---~-G~~V~~~d~~~~~~~-a~~-------~g~~---~~sl~ell~~aDvV~l~~P 292 (628)
++|.|||.|.+|...+-. ++. + +-++..+|....... ..+ .... ..+.++.++.||+|++++-
T Consensus 1 mKIaiIGaGs~g~~~~~~~l~~~~~~~~~~el~L~Did~~k~~~~~d~~~~~~~~~~~~~~t~~~~~~l~~aDvVVita~ 80 (162)
T d1up7a1 1 MRIAVIGGGSSYTPELVKGLLDISEDVRIDEVIFYDIDEEKQKIVVDFVKRLVKDRFKVLISDTFEGAVVDAKYVIFQFR 80 (162)
T ss_dssp CEEEEETTTCTTHHHHHHHHHHHTTTSCCCEEEEECSCHHHHHHHHHHHHHHHTTSSEEEECSSHHHHHTTCSEEEECCC
T ss_pred CEEEEECCCHHHHHHHHHHHHhcccccCccEEEEEecCcHHHHHHHHHHHhhhccCceEEEecCcccccCCCCEEEEecc
Confidence 479999999998777643 221 2 358999997642211 111 1111 1368899999999999874
Q ss_pred CCc-----------cccccccH---------------------HHHhcCCCCcEEEEcCCCchhcHHHHHHHHhCCCeeE
Q 006864 293 LNP-----------TTSKIFND---------------------ETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQ 340 (628)
Q Consensus 293 lt~-----------~t~~li~~---------------------~~l~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~g 340 (628)
... ...+++.. ....+..|+++++|++..--+-..++.+.....++.|
T Consensus 81 ~~~~~~~~r~~~i~~~~~i~~~~~~g~~g~~~~~r~~~~~~~i~~~~~~~p~a~~i~vtNPvdiit~~~~~~~p~~rviG 160 (162)
T d1up7a1 81 PGGLKGRENDEGIPLKYGLIGQETTGVGGFSAALRAFPIVEEYVDTVRKTSNATIVNFTNPSGHITEFVRNYLEYEKFIG 160 (162)
T ss_dssp TTHHHHHHHHHHGGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEECSSSHHHHHHHHHHTTCCSSEEE
T ss_pred cCCCCCcchHhhhhhhcCeeeeeccCcchhhhhhhhhHHHHHHhhhhccCCCeEEEEeCCHHHHHHHHHHHhCCCCCEEe
Confidence 321 11122110 1122346899999999776556666666543345543
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=94.24 E-value=0.083 Score=47.66 Aligned_cols=46 Identities=37% Similarity=0.462 Sum_probs=39.2
Q ss_pred cCCeEEEEecChhHHHHHHHHHcCC-CEEEEECCCC-ChhHHHHcCCc
Q 006864 228 VGKTLAVMGFGKVGSEVARRAKGLG-MNVIAHDPYA-PADKARAVGVE 273 (628)
Q Consensus 228 ~GktiGIIGlG~IG~~vA~~l~~~G-~~V~~~d~~~-~~~~a~~~g~~ 273 (628)
.|.++.|+|.|.+|...++.++.+| .+|++.|+.. ..+.++++|..
T Consensus 29 ~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~GA~ 76 (176)
T d1d1ta2 29 PGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAVGAT 76 (176)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHHTCS
T ss_pred CCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhcCCc
Confidence 5789999999999999999999999 4899999876 44667777753
|
| >d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Potassium channel-related protein MthK species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]
Probab=94.21 E-value=0.018 Score=49.29 Aligned_cols=84 Identities=19% Similarity=0.325 Sum_probs=50.7
Q ss_pred CeEEEEecChhHHHHHHHHHcCCCEEEEECCCCChhHHHHcCCccc-----C---HHH-HhccCCEEEEcCCCCcccccc
Q 006864 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELV-----S---FDQ-ALATADFISLHMPLNPTTSKI 300 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~-----s---l~e-ll~~aDvV~l~~Plt~~t~~l 300 (628)
|.+-|+|+|++|+.+++.|++.+..|+-.|+.. .+.....|+..+ + |.+ -+.+|+.+++..+-. ..++
T Consensus 1 kHivI~G~g~~g~~l~~~L~~~~i~vi~~d~~~-~~~~~~~~~~~i~Gd~~~~~~L~~a~i~~A~~vi~~~~~d--~~n~ 77 (129)
T d2fy8a1 1 RHVVICGWSESTLECLRELRGSEVFVLAEDENV-RKKVLRSGANFVHGDPTRVSDLEKANVRGARAVIVNLESD--SETI 77 (129)
T ss_dssp CCEEEESCCHHHHHHHHTSCGGGEEEEESCTTH-HHHHHHTTCEEEESCTTSHHHHHHTTCTTCSEEEECCSSH--HHHH
T ss_pred CEEEEECCCHHHHHHHHHHcCCCCEEEEcchHH-HHHHHhcCccccccccCCHHHHHHhhhhcCcEEEEeccch--hhhH
Confidence 568899999999999999987664444334332 233455565432 2 222 257899999888733 3334
Q ss_pred ccHHHHhcCCCCcEEE
Q 006864 301 FNDETFAKMKKGVRIV 316 (628)
Q Consensus 301 i~~~~l~~mk~gailI 316 (628)
+-....+.+.|...++
T Consensus 78 ~~~~~~r~~~~~~~ii 93 (129)
T d2fy8a1 78 HCILGIRKIDESVRII 93 (129)
T ss_dssp HHHHHHHHHCSSSCEE
T ss_pred HHHHHHHHHCCCceEE
Confidence 3344445555554333
|
| >d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: 6-phospho-beta-glucosidase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=94.20 E-value=0.095 Score=47.15 Aligned_cols=111 Identities=17% Similarity=0.154 Sum_probs=66.5
Q ss_pred CeEEEEecChhH--HHHHHHHHcC---C-CEEEEECCCCChhHHH-----------HcCCc-----ccCHHHHhccCCEE
Q 006864 230 KTLAVMGFGKVG--SEVARRAKGL---G-MNVIAHDPYAPADKAR-----------AVGVE-----LVSFDQALATADFI 287 (628)
Q Consensus 230 ktiGIIGlG~IG--~~vA~~l~~~---G-~~V~~~d~~~~~~~a~-----------~~g~~-----~~sl~ell~~aDvV 287 (628)
.+|.|||.|.+| ..++..++.. . -++..+|......+.+ ..+.. ..+..+.++.||+|
T Consensus 2 ~KI~iIGaGs~~~~~~~~~l~~~~~~~~~~eI~L~Di~e~~~~~~~~d~~~~~~~~~~~~~~~~~~~td~~~al~gaDvV 81 (169)
T d1s6ya1 2 LKIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMVEKAGVPIEIHLTLDRRRALDGADFV 81 (169)
T ss_dssp EEEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTTCSEE
T ss_pred cEEEEECCChhhHHHHHHHHHHhccccCCCEEEEEcCCccHHHHHHHHHHHHHHHHhcCCCceeeecCCchhhcCCCCEE
Confidence 479999999776 4555555543 2 4899999765332111 11221 23688899999999
Q ss_pred EEcCCCCcc-----------cccccc----------------------HHHHhcCCCCcEEEEcCCCchhcHHHHHHHHh
Q 006864 288 SLHMPLNPT-----------TSKIFN----------------------DETFAKMKKGVRIVNVARGGVIDEEALVRALD 334 (628)
Q Consensus 288 ~l~~Plt~~-----------t~~li~----------------------~~~l~~mk~gailIN~aRg~~vde~aL~~aL~ 334 (628)
+++...... ..++.. .+.+....|+++++|++-.-=+-..++.+...
T Consensus 82 v~ta~~~~~~~~~r~~~i~~~~gi~~~~t~g~~~~~~~~~n~~i~~~i~~~i~~~~pda~~i~vtNPvdv~t~~~~k~~p 161 (169)
T d1s6ya1 82 TTQFRVGGLEARAKDERIPLKYGVIGQETNGPGGLFKGLRTIPVILDIIRDMEELCPDAWLINFTNPAGMVTEAVLRYTK 161 (169)
T ss_dssp EECCCTTHHHHHHHHHHTGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECSSSHHHHHHHHHHHCC
T ss_pred EEccccCCCCCeehhhhhhhhcCceeccccCcchhhhccccHHHHHHHHHHHhhcCCCeEEEEeCChHHHHHHHHHHHCC
Confidence 999864321 111110 13455568999999998654444555555443
Q ss_pred CCCeeE
Q 006864 335 SGVVAQ 340 (628)
Q Consensus 335 ~g~i~g 340 (628)
..++.|
T Consensus 162 ~~kviG 167 (169)
T d1s6ya1 162 QEKVVG 167 (169)
T ss_dssp CCCEEE
T ss_pred CCCEEe
Confidence 344433
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=94.06 E-value=0.019 Score=51.62 Aligned_cols=45 Identities=27% Similarity=0.321 Sum_probs=35.3
Q ss_pred cCCeEEEEecChhHHHHHHHHHcCCC-EEEEECCCC-ChhHHHHcCC
Q 006864 228 VGKTLAVMGFGKVGSEVARRAKGLGM-NVIAHDPYA-PADKARAVGV 272 (628)
Q Consensus 228 ~GktiGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~-~~~~a~~~g~ 272 (628)
.|.++.|+|.|.+|...++.++.+|. +|++.|+.. ..+.+++.|.
T Consensus 32 ~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~~ga 78 (172)
T d1h2ba2 32 PGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERLGA 78 (172)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHTTC
T ss_pred CCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHhhccc
Confidence 37899999999999999999998885 677788764 2344556654
|
| >d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Rck domain from putative potassium channel Kch species: Escherichia coli [TaxId: 562]
Probab=94.04 E-value=0.025 Score=49.75 Aligned_cols=63 Identities=10% Similarity=0.086 Sum_probs=44.2
Q ss_pred eEEEEecChhHHHHHHHHHcCCCEEEEECCCCCh--hH---HHHcCCccc-----C---HH-HHhccCCEEEEcCCC
Q 006864 231 TLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPA--DK---ARAVGVELV-----S---FD-QALATADFISLHMPL 293 (628)
Q Consensus 231 tiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~--~~---a~~~g~~~~-----s---l~-ell~~aDvV~l~~Pl 293 (628)
.+-|+|+|++|+.+++.|...|.+|++.|..... .. ....|+..+ + |+ .-+.+||.|+++++-
T Consensus 5 HiII~G~g~~g~~l~~~L~~~~~~v~vId~d~~~~~~~~~~~~~~~~~vi~Gd~~d~~~L~~a~i~~a~~vi~~~~~ 81 (153)
T d1id1a_ 5 HFIVCGHSILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLGDNADVIPGDSNDSSVLKKAGIDRCRAILALSDN 81 (153)
T ss_dssp CEEEECCSHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHCTTCEEEESCTTSHHHHHHHTTTTCSEEEECSSC
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCEEEEeccchhHHHHHHHhhcCCcEEEEccCcchHHHHHhccccCCEEEEcccc
Confidence 5889999999999999999999999998765421 11 122344322 2 22 235679999888873
|
| >d1y81a1 c.2.1.8 (A:6-121) Hypothetical protein PF0725 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein PF0725 species: Pyrococcus furiosus [TaxId: 2261]
Probab=93.68 E-value=0.052 Score=46.02 Aligned_cols=98 Identities=18% Similarity=0.241 Sum_probs=67.1
Q ss_pred CeEEEEec----ChhHHHHHHHHHcCCCEEEEECCCCChhHHHHcCCcc-cCHHHHhccCCEEEEcCCCCccccccccHH
Q 006864 230 KTLAVMGF----GKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVEL-VSFDQALATADFISLHMPLNPTTSKIFNDE 304 (628)
Q Consensus 230 ktiGIIGl----G~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~-~sl~ell~~aDvV~l~~Plt~~t~~li~~~ 304 (628)
|+|+|||. |+.|..+.+.|+.+|++|+.++|.... -.|... -++.++-..-|++++++| .+.+...+. +
T Consensus 2 KsIAVvGaS~~~~k~g~~v~~~L~~~g~~V~pVnP~~~~----i~G~~~y~sl~~lp~~~D~vvi~vp-~~~~~~~l~-~ 75 (116)
T d1y81a1 2 RKIALVGASKNPAKYGNIILKDLLSKGFEVLPVNPNYDE----IEGLKCYRSVRELPKDVDVIVFVVP-PKVGLQVAK-E 75 (116)
T ss_dssp CEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSE----ETTEECBSSGGGSCTTCCEEEECSC-HHHHHHHHH-H
T ss_pred cEEEEEcccCCCCCcHHHHHHHHHHCCCEEEEEcccccc----ccCccccccchhccccceEEEEEeC-HHHHHHHHH-H
Confidence 78999994 688999999999999999999987422 135543 378888888999999999 223334443 3
Q ss_pred HHhcCCCCcEEEEcCCCchhcHHHHHHHHhCCCe
Q 006864 305 TFAKMKKGVRIVNVARGGVIDEEALVRALDSGVV 338 (628)
Q Consensus 305 ~l~~mk~gailIN~aRg~~vde~aL~~aL~~g~i 338 (628)
..+ +...++++.. +..++ .+.+.+++..+
T Consensus 76 ~~~-~g~k~v~~~~---g~~~~-~~~~~a~~~gi 104 (116)
T d1y81a1 76 AVE-AGFKKLWFQP---GAESE-EIRRFLEKAGV 104 (116)
T ss_dssp HHH-TTCCEEEECT---TSCCH-HHHHHHHHHTC
T ss_pred HHh-cCCceEEecc---chhhH-HHHHHHHHcCC
Confidence 333 4455677653 33444 45666665444
|
| >d1vlva2 c.78.1.1 (A:153-313) Ornithine transcarbamoylase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Ornithine transcarbamoylase species: Thermotoga maritima [TaxId: 2336]
Probab=93.67 E-value=0.19 Score=44.52 Aligned_cols=93 Identities=19% Similarity=0.235 Sum_probs=61.3
Q ss_pred ecCCeEEEEec--ChhHHHHHHHHHcCCCEEEEECCCC--C-hh-------HHHHcCC--cc-cCHHHHhccCCEEEEcC
Q 006864 227 LVGKTLAVMGF--GKVGSEVARRAKGLGMNVIAHDPYA--P-AD-------KARAVGV--EL-VSFDQALATADFISLHM 291 (628)
Q Consensus 227 l~GktiGIIGl--G~IG~~vA~~l~~~G~~V~~~d~~~--~-~~-------~a~~~g~--~~-~sl~ell~~aDvV~l~~ 291 (628)
|.|++|++||= .++-.+....+..||+++...-|.. + .. .+...+. .. .++++.++.+|+|..-.
T Consensus 1 l~g~ki~~vGD~~nnV~~Sli~~~~~~g~~i~~~~P~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~ai~~aDviyt~~ 80 (161)
T d1vlva2 1 LKGVKVVFMGDTRNNVATSLMIACAKMGMNFVACGPEELKPRSDVFKRCQEIVKETDGSVSFTSNLEEALAGADVVYTDV 80 (161)
T ss_dssp STTCEEEEESCTTSHHHHHHHHHHHHTTCEEEEESCGGGCCCHHHHHHHHHHHHHHCCEEEEESCHHHHHTTCSEEEECC
T ss_pred CCCCEEEEEcCCccHHHHHHHHHHHHcCCEEEEecchhhhhhhhHHHHHHHHHhhcCCceEEEecHHHhhhhhhheeccc
Confidence 57999999994 5899999999999999999987742 2 11 1122232 22 37999999999998855
Q ss_pred CCCcc------------ccc-cccHHHHhcCCCCcEEEEcC
Q 006864 292 PLNPT------------TSK-IFNDETFAKMKKGVRIVNVA 319 (628)
Q Consensus 292 Plt~~------------t~~-li~~~~l~~mk~gailIN~a 319 (628)
-.... ... ..+......+|++++|.-|.
T Consensus 81 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~MH~l 121 (161)
T d1vlva2 81 WASMGEEDKEKERMALLKPYQVNERVMEMTGKSETIFMHCL 121 (161)
T ss_dssp CC----------CHHHHGGGCBCHHHHHTTCCTTCEEEECS
T ss_pred eeeecccccchhhhccccceeeeehhhhcccCCCeeEecCC
Confidence 32211 011 12223333477788888774
|
| >d1l7da2 c.23.12.2 (A:1-143,A:327-377) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Formate/glycerate dehydrogenase catalytic domain-like family: L-alanine dehydrogenase-like domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=93.44 E-value=0.12 Score=47.63 Aligned_cols=98 Identities=23% Similarity=0.386 Sum_probs=73.8
Q ss_pred HHHHHHHcCCCEEEEECC-----CCChhHHHHcCCccc-CHHHHhccCCEEE-EcCCCCccccccccHHHHhcCCCCcEE
Q 006864 243 EVARRAKGLGMNVIAHDP-----YAPADKARAVGVELV-SFDQALATADFIS-LHMPLNPTTSKIFNDETFAKMKKGVRI 315 (628)
Q Consensus 243 ~vA~~l~~~G~~V~~~d~-----~~~~~~a~~~g~~~~-sl~ell~~aDvV~-l~~Plt~~t~~li~~~~l~~mk~gail 315 (628)
..+++|...|++|++=.- ..+.+...+.|++.+ +-++++.++|+|+ +..|+..+ .+.+.+++||+|+++
T Consensus 21 ~~vkkl~~~G~~V~vE~gaG~~a~fsD~~Y~~aGA~i~~~~~~~~~~~diilkV~~P~~~e----~~~~ei~~lk~g~~l 96 (194)
T d1l7da2 21 EVVKKLVGLGFEVIVEQGAGVGASITDDALTAAGATIASTAAQALSQADVVWKVQRPMTAE----EGTDEVALIKEGAVL 96 (194)
T ss_dssp HHHHHHHHTTCEEEEETTTTGGGTCCHHHHHHTTCEEESSHHHHHSSCSEEEEEECCCCGG----GSCCGGGGSCTTCEE
T ss_pred HHHHHHHHCCCEEEEEcCcccccCCCHHHHHHhhhhcchhhhhhhhcccceeEecCCcccc----cchhHhhhccCceEE
Confidence 578889999999998532 234555677898876 5789999999886 45565443 234578889999999
Q ss_pred EEcCCCchhcHHHHHHHHhCCCeeEEEeecc
Q 006864 316 VNVARGGVIDEEALVRALDSGVVAQAALDVF 346 (628)
Q Consensus 316 IN~aRg~~vde~aL~~aL~~g~i~ga~lDV~ 346 (628)
|..-- .....++.++|.+.++...++|..
T Consensus 97 i~~l~--p~~~~~~~~~l~~~~it~~a~e~i 125 (194)
T d1l7da2 97 MCHLG--ALTNRPVVEALTKRKITAYAMELM 125 (194)
T ss_dssp EEECC--GGGCHHHHHHHHHTTCEEEEGGGC
T ss_pred EEecc--cccchhHHHHHHhcCceEEeeecc
Confidence 99763 556678899999999988888764
|
| >d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 2 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=93.39 E-value=0.95 Score=39.69 Aligned_cols=35 Identities=17% Similarity=0.265 Sum_probs=31.3
Q ss_pred cCCeEEEEecChhHHHHHHHHHcCCCE-EEEECCCC
Q 006864 228 VGKTLAVMGFGKVGSEVARRAKGLGMN-VIAHDPYA 262 (628)
Q Consensus 228 ~GktiGIIGlG~IG~~vA~~l~~~G~~-V~~~d~~~ 262 (628)
.+|+|.|||-|.+|...|..|+.+|++ |.++++..
T Consensus 3 ~~~kVaIIGaGpaGl~aA~~l~~~G~~~V~v~E~~~ 38 (196)
T d1gtea4 3 YSAKIALLGAGPASISCASFLARLGYSDITIFEKQE 38 (196)
T ss_dssp GGCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSS
T ss_pred CCCEEEEECChHHHHHHHHHHHHCCCCeEEEEEecC
Confidence 579999999999999999999999995 98887653
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=93.26 E-value=0.12 Score=46.33 Aligned_cols=47 Identities=30% Similarity=0.357 Sum_probs=39.0
Q ss_pred ecCCeEEEEecChhHHHHHHHHHcCCC-EEEEECCCC-ChhHHHHcCCc
Q 006864 227 LVGKTLAVMGFGKVGSEVARRAKGLGM-NVIAHDPYA-PADKARAVGVE 273 (628)
Q Consensus 227 l~GktiGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~-~~~~a~~~g~~ 273 (628)
-.|.++.|+|.|.+|...++.++.+|. +|++.|+.. ..+.++++|+.
T Consensus 26 ~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~lGa~ 74 (174)
T d1p0fa2 26 TPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGAT 74 (174)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTTCS
T ss_pred CCCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHHHcCCc
Confidence 357899999999999999999999996 799999875 34667777753
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=93.17 E-value=0.032 Score=50.19 Aligned_cols=45 Identities=20% Similarity=0.281 Sum_probs=35.0
Q ss_pred cCCeEEEEe-cChhHHHHHHHHHcCCCEEEEECCCC-ChhHHHHcCC
Q 006864 228 VGKTLAVMG-FGKVGSEVARRAKGLGMNVIAHDPYA-PADKARAVGV 272 (628)
Q Consensus 228 ~GktiGIIG-lG~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~g~ 272 (628)
.|.++.|.| .|.+|...++.++.+|++|++.+... ..+..++.|+
T Consensus 25 ~g~~VlI~ga~g~vG~~~iqla~~~g~~vi~~~~~~~~~~~l~~~Ga 71 (183)
T d1pqwa_ 25 PGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLSRLGV 71 (183)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHTTCC
T ss_pred CCCEEEEECCCCCcccccchhhccccccceeeecccccccccccccc
Confidence 478999988 59999999999999999999886543 2344455554
|
| >d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: MJ0490, lactate/malate dehydrogenase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=93.07 E-value=0.027 Score=49.84 Aligned_cols=62 Identities=13% Similarity=0.185 Sum_probs=42.9
Q ss_pred CeEEEEe-cChhHHHHHHHHHcCCC--EEEEECCCCChhH----HHHc----CC-----cc----cCHHHHhccCCEEEE
Q 006864 230 KTLAVMG-FGKVGSEVARRAKGLGM--NVIAHDPYAPADK----ARAV----GV-----EL----VSFDQALATADFISL 289 (628)
Q Consensus 230 ktiGIIG-lG~IG~~vA~~l~~~G~--~V~~~d~~~~~~~----a~~~----g~-----~~----~sl~ell~~aDvV~l 289 (628)
++|+||| .|.+|+.+|..+...|. ++..||....... +.++ .. .. .+-.+.++.||+|++
T Consensus 1 MKV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~d~~~l~~aDvVVi 80 (145)
T d1hyea1 1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANIYVESDENLRIIDESDVVII 80 (145)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHHHHHHHHHHHHHHHTTSCCCCEEEEEETTCGGGGTTCSEEEE
T ss_pred CEEEEECCCChHHHHHHHHHHhCCcccccccccchhhhHhhhcccccchhcccccccCCccccCCcchHHHhccceEEEE
Confidence 4799999 59999999999998884 8999997642221 1111 10 10 123467889999999
Q ss_pred cC
Q 006864 290 HM 291 (628)
Q Consensus 290 ~~ 291 (628)
+.
T Consensus 81 tA 82 (145)
T d1hyea1 81 TS 82 (145)
T ss_dssp CC
T ss_pred ec
Confidence 84
|
| >d1iuka_ c.2.1.8 (A:) Hypothetical protein TT1466 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein TT1466 species: Thermus thermophilus [TaxId: 274]
Probab=93.04 E-value=0.079 Score=46.06 Aligned_cols=101 Identities=18% Similarity=0.274 Sum_probs=70.9
Q ss_pred cCCeEEEEec----ChhHHHHHHHHHcCCCEEEEECCCCChhHHHHcCCcc-cCHHHHhccCCEEEEcCCCCcccccccc
Q 006864 228 VGKTLAVMGF----GKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVEL-VSFDQALATADFISLHMPLNPTTSKIFN 302 (628)
Q Consensus 228 ~GktiGIIGl----G~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~-~sl~ell~~aDvV~l~~Plt~~t~~li~ 302 (628)
.-|+|+|||. ++.|..+.+.|+.+|+++..|.+..... .-.|... .++.++-..-|++++++| .+.+..++.
T Consensus 12 ~pksIAVVGaS~~~~k~g~~v~~~L~~~g~~~~~v~~~~~~~--~i~g~~~~~~l~~i~~~iD~v~v~~p-~~~v~~~v~ 88 (136)
T d1iuka_ 12 QAKTIAVLGAHKDPSRPAHYVPRYLREQGYRVLPVNPRFQGE--ELFGEEAVASLLDLKEPVDILDVFRP-PSALMDHLP 88 (136)
T ss_dssp HCCEEEEETCCSSTTSHHHHHHHHHHHTTCEEEEECGGGTTS--EETTEECBSSGGGCCSCCSEEEECSC-HHHHTTTHH
T ss_pred CCCeEEEEeecCCCCCchHHHHHHHhcCCCCceEEEeccccc--eeeceecccchhhccCCCceEEEecc-HHHHHHHHH
Confidence 3589999997 7899999999999999999998753211 1124433 378888888999999998 333444543
Q ss_pred HHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhCC
Q 006864 303 DETFAKMKKGVRIVNVARGGVIDEEALVRALDSG 336 (628)
Q Consensus 303 ~~~l~~mk~gailIN~aRg~~vde~aL~~aL~~g 336 (628)
+ .. .+...++++..+ ..++++...|.++|
T Consensus 89 ~-~~-~~g~k~i~~q~G---~~~~e~~~~a~~~G 117 (136)
T d1iuka_ 89 E-VL-ALRPGLVWLQSG---IRHPEFEKALKEAG 117 (136)
T ss_dssp H-HH-HHCCSCEEECTT---CCCHHHHHHHHHTT
T ss_pred H-HH-hhCCCeEEEecC---ccCHHHHHHHHHcC
Confidence 3 23 345667887643 56777666666666
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=92.96 E-value=0.51 Score=41.69 Aligned_cols=45 Identities=38% Similarity=0.489 Sum_probs=37.0
Q ss_pred cCCeEEEEecChhHHHHHHHHHcCCC-EEEEECCCCC-hhHHHHcCC
Q 006864 228 VGKTLAVMGFGKVGSEVARRAKGLGM-NVIAHDPYAP-ADKARAVGV 272 (628)
Q Consensus 228 ~GktiGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~~-~~~a~~~g~ 272 (628)
.|.++.|+|.|.+|...+..++.+|. +|++.|+... .+.++++|.
T Consensus 28 ~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~~Ga 74 (176)
T d2jhfa2 28 QGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGA 74 (176)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTC
T ss_pred CCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHHhCC
Confidence 57899999999999999999999985 8999998753 345566654
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=92.86 E-value=0.03 Score=49.87 Aligned_cols=45 Identities=29% Similarity=0.419 Sum_probs=36.1
Q ss_pred cCCeEEEEec-ChhHHHHHHHHHcCC-CEEEEECCCC-ChhHHHHcCC
Q 006864 228 VGKTLAVMGF-GKVGSEVARRAKGLG-MNVIAHDPYA-PADKARAVGV 272 (628)
Q Consensus 228 ~GktiGIIGl-G~IG~~vA~~l~~~G-~~V~~~d~~~-~~~~a~~~g~ 272 (628)
.|.++.|+|. |.+|...++.++..| .+|++.+++. ..+.++++|+
T Consensus 27 ~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~~Ga 74 (170)
T d1jvba2 27 PTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAGA 74 (170)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHTC
T ss_pred CCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHHcCC
Confidence 4689999995 999999999999888 5899998775 3345566665
|
| >d1ml4a2 c.78.1.1 (A:152-308) Aspartate carbamoyltransferase catalytic subunit {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Aspartate carbamoyltransferase catalytic subunit species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=92.70 E-value=0.15 Score=44.96 Aligned_cols=66 Identities=12% Similarity=0.221 Sum_probs=50.6
Q ss_pred ecCCeEEEEec---ChhHHHHHHHHHcCCCEEEEECCCC--C-hh---HHHHcCCc---ccCHHHHhccCCEEEEcCC
Q 006864 227 LVGKTLAVMGF---GKVGSEVARRAKGLGMNVIAHDPYA--P-AD---KARAVGVE---LVSFDQALATADFISLHMP 292 (628)
Q Consensus 227 l~GktiGIIGl---G~IG~~vA~~l~~~G~~V~~~d~~~--~-~~---~a~~~g~~---~~sl~ell~~aDvV~l~~P 292 (628)
|.|++|+|||= +++..+++..+..||+++....|.. + .. ...+.+.. ..++++.++.+|+|....-
T Consensus 2 l~gl~i~~vGD~~~srV~~Sli~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~d~~~av~~aDvvy~~~~ 79 (157)
T d1ml4a2 2 IDGLKIGLLGDLKYGRTVHSLAEALTFYDVELYLISPELLRMPRHIVEELREKGMKVVETTTLEDVIGKLDVLYVTRI 79 (157)
T ss_dssp SSSEEEEEESCTTTCHHHHHHHHHGGGSCEEEEEECCGGGCCCHHHHHHHHHTTCCEEEESCTHHHHTTCSEEEECCC
T ss_pred cCCCEEEEEcCCccChHHHHHHHHHHhcCCcEEEEccchhhcchHHHHHHHhhcccceeecCHHHhhccCcEEEeecc
Confidence 67999999998 6899999999999999999988753 2 11 22333332 2389999999999887654
|
| >d1dxha2 c.78.1.1 (A:151-335) Ornithine transcarbamoylase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Ornithine transcarbamoylase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=92.16 E-value=0.29 Score=44.44 Aligned_cols=94 Identities=19% Similarity=0.210 Sum_probs=64.1
Q ss_pred eecCCeEEEEec--ChhHHHHHHHHHcCCCEEEEECCCC---ChhH-------HHHcCCc--c-cCHHHHhccCCEEEEc
Q 006864 226 SLVGKTLAVMGF--GKVGSEVARRAKGLGMNVIAHDPYA---PADK-------ARAVGVE--L-VSFDQALATADFISLH 290 (628)
Q Consensus 226 ~l~GktiGIIGl--G~IG~~vA~~l~~~G~~V~~~d~~~---~~~~-------a~~~g~~--~-~sl~ell~~aDvV~l~ 290 (628)
.|.|.+|++||= -++..+++..+..||+++.+..|.. +.+. +...|.. . .++++.++.+|+|..-
T Consensus 2 ~l~~lkia~vGD~~nnV~~Sli~~~~~~G~~l~l~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~eai~~aDvVyt~ 81 (185)
T d1dxha2 2 PLHDISYAYLGDARNNMGNSLLLIGAKLGMDVRIAAPKALWPHDEFVAQCKKFAEESGAKLTLTEDPKEAVKGVDFVHTD 81 (185)
T ss_dssp CGGGCEEEEESCCSSHHHHHHHHHHHHTTCEEEEECCGGGSCCHHHHHHHHHHHHHHTCEEEEESCHHHHTTTCSEEEEC
T ss_pred CCCCCEEEEEcCCcchHHHHHHHHHHHcCCEEEEEccHHHHhhhHHHHHHHHHhhccCCeEEEEeChhhccccccEEEee
Confidence 378999999995 4899999999999999999998842 2211 1223332 2 3799999999999875
Q ss_pred CCCCcc--c-----------ccccc-HHHHhcCCCCcEEEEcC
Q 006864 291 MPLNPT--T-----------SKIFN-DETFAKMKKGVRIVNVA 319 (628)
Q Consensus 291 ~Plt~~--t-----------~~li~-~~~l~~mk~gailIN~a 319 (628)
.=.... . ...++ ......+|++++|.-|.
T Consensus 82 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ak~~~i~MH~L 124 (185)
T d1dxha2 82 VWVSMGEPVEAWGERIKELLPYQVNMEIMKATGNPRAKFMHCL 124 (185)
T ss_dssp CCSCSSSCGGGCHHHHHHHGGGCBCHHHHHTTCCSSCEEEECS
T ss_pred hhhhhhhhhhhHHHHHHHhhhheeccHHHHhhcCCCEEEEcCC
Confidence 432111 0 01223 33444578899999886
|
| >d2d59a1 c.2.1.8 (A:4-142) Hypothetical protein PH1109 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein PH1109 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=92.14 E-value=0.14 Score=44.63 Aligned_cols=99 Identities=17% Similarity=0.170 Sum_probs=67.4
Q ss_pred cCCeEEEEec----ChhHHHHHHHHHcCCCEEEEECCCCChhHHHHcCCcc-cCHHHHhccCCEEEEcCCCCcccccccc
Q 006864 228 VGKTLAVMGF----GKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVEL-VSFDQALATADFISLHMPLNPTTSKIFN 302 (628)
Q Consensus 228 ~GktiGIIGl----G~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~-~sl~ell~~aDvV~l~~Plt~~t~~li~ 302 (628)
.-|+|+|||. |+.|..+++.|+.+|++|+..+|... .-.|... .++.++-..-|++++++|-. .+..++
T Consensus 18 ~~ksIAVVGaS~~~~~~g~~v~~~L~~~g~~v~pVnP~~~----~i~G~~~~~sl~dlp~~iD~v~i~vp~~-~~~~~~- 91 (139)
T d2d59a1 18 RYKKIALVGASPKPERDANIVMKYLLEHGYDVYPVNPKYE----EVLGRKCYPSVLDIPDKIEVVDLFVKPK-LTMEYV- 91 (139)
T ss_dssp HCCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCS----EETTEECBSSGGGCSSCCSEEEECSCHH-HHHHHH-
T ss_pred cCCeEEEEeecCCCCCchHHHHHHHHHCCCEEEEECCccc----ccCCCcccccccccCccceEEEEEeCHH-HHHHHH-
Confidence 3589999996 57999999999999999999998742 1234443 37888888999999999922 223333
Q ss_pred HHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhCC
Q 006864 303 DETFAKMKKGVRIVNVARGGVIDEEALVRALDSG 336 (628)
Q Consensus 303 ~~~l~~mk~gailIN~aRg~~vde~aL~~aL~~g 336 (628)
++.. .+...++++..+ ..+++....+-+.|
T Consensus 92 ~e~~-~~g~k~v~~~~G---~~~ee~~~~a~~~g 121 (139)
T d2d59a1 92 EQAI-KKGAKVVWFQYN---TYNREASKKADEAG 121 (139)
T ss_dssp HHHH-HHTCSEEEECTT---CCCHHHHHHHHHTT
T ss_pred HHHH-HhCCCEEEEecc---ccCHHHHHHHHHCC
Confidence 2333 345567777654 45665544444444
|
| >d2at2a2 c.78.1.1 (A:145-295) Aspartate carbamoyltransferase catalytic subunit {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Aspartate carbamoyltransferase catalytic subunit species: Bacillus subtilis [TaxId: 1423]
Probab=92.07 E-value=0.061 Score=47.67 Aligned_cols=61 Identities=26% Similarity=0.330 Sum_probs=46.8
Q ss_pred cCCeEEEEec---ChhHHHHHHHHHcCCCEEEEECCCCChhHHHHcCCc-ccCHHHHhccCCEEEEc
Q 006864 228 VGKTLAVMGF---GKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVE-LVSFDQALATADFISLH 290 (628)
Q Consensus 228 ~GktiGIIGl---G~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~-~~sl~ell~~aDvV~l~ 290 (628)
.|.+|++||= +++..+++..+..||+++....|..-.. ....+. ..++++.++.+|+|..-
T Consensus 2 ~gl~i~~vGD~~~srv~~Sl~~~~~~~g~~~~i~~P~~~~~--~~~~~~~~~~~~ea~~~aDviy~~ 66 (151)
T d2at2a2 2 KGLTVSIHGDIKHSRVARSNAEVLTRLGARVLFSGPSEWQD--EENTFGTYVSMDEAVESSDVVMLL 66 (151)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHcCCcccccCCchhhc--cccceeEEEechhccccCceeeee
Confidence 5899999996 6899999999999999998887753111 111222 34899999999999764
|
| >d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=91.87 E-value=0.076 Score=49.07 Aligned_cols=33 Identities=33% Similarity=0.421 Sum_probs=31.4
Q ss_pred CCeEEEEecChhHHHHHHHHHcCCCEEEEECCC
Q 006864 229 GKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPY 261 (628)
Q Consensus 229 GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~ 261 (628)
||+|.|||-|.-|...|..|+..|++|.+++..
T Consensus 1 ~KkV~IIGaG~aGL~aA~~La~~G~~V~vlE~~ 33 (373)
T d1seza1 1 AKRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAE 33 (373)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTSCEEEEECSS
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCCEEEEeCC
Confidence 799999999999999999999999999999864
|
| >d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Alpha-glucosidase AglA species: Thermotoga maritima [TaxId: 2336]
Probab=91.83 E-value=0.11 Score=46.87 Aligned_cols=64 Identities=22% Similarity=0.295 Sum_probs=42.3
Q ss_pred CCeEEEEecChhHHHHHH---HHH--cC-CCEEEEECCCCChhH---------HHHcCC--c---ccCHHHHhccCCEEE
Q 006864 229 GKTLAVMGFGKVGSEVAR---RAK--GL-GMNVIAHDPYAPADK---------ARAVGV--E---LVSFDQALATADFIS 288 (628)
Q Consensus 229 GktiGIIGlG~IG~~vA~---~l~--~~-G~~V~~~d~~~~~~~---------a~~~g~--~---~~sl~ell~~aDvV~ 288 (628)
+.+|+|||.|.+|...+- .++ .+ +-++..+|....... ....+. + ..++++.++.||+|+
T Consensus 2 ~mKI~iIGaGsvg~t~~~~~~l~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~i~~~td~~eaL~dad~Vv 81 (171)
T d1obba1 2 SVKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEVGADLKFEKTMNLDDVIIDADFVI 81 (171)
T ss_dssp CCEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTTCSEEE
T ss_pred CcEEEEECCCHHHhHHHHHHHHHhccccCCCEEEEEeCCchHHHHHHHHHHHHHHhcCCCeEEEEeCChhhcccCCCeEe
Confidence 468999999999976433 332 33 359999998642211 111222 1 137899999999999
Q ss_pred EcCC
Q 006864 289 LHMP 292 (628)
Q Consensus 289 l~~P 292 (628)
+..-
T Consensus 82 ~~~~ 85 (171)
T d1obba1 82 NTAM 85 (171)
T ss_dssp ECCC
T ss_pred eecc
Confidence 8753
|
| >d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), I [TaxId: 4076]
Probab=91.75 E-value=0.12 Score=49.56 Aligned_cols=37 Identities=30% Similarity=0.388 Sum_probs=33.5
Q ss_pred eecCCeEEEEe-cChhHHHHHHHHHcCCCEEEEECCCC
Q 006864 226 SLVGKTLAVMG-FGKVGSEVARRAKGLGMNVIAHDPYA 262 (628)
Q Consensus 226 ~l~GktiGIIG-lG~IG~~vA~~l~~~G~~V~~~d~~~ 262 (628)
+|+||++.|.| -+.||+++|++|...|++|+..++..
T Consensus 3 ~L~gK~alITGas~GIG~aia~~la~~G~~V~i~~r~~ 40 (258)
T d1ae1a_ 3 SLKGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNE 40 (258)
T ss_dssp CCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence 58999999998 56799999999999999999999863
|
| >d2csua1 c.2.1.8 (A:1-129) Acetate-CoA ligase alpha chain, AcdA, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Acetate-CoA ligase alpha chain, AcdA, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=91.40 E-value=0.057 Score=46.65 Aligned_cols=104 Identities=24% Similarity=0.235 Sum_probs=66.9
Q ss_pred ecCCeEEEEec----ChhHHHHHHHHHcCC-CEEEEECCCCChhHHHHcCCcc-cCHHHHhccCCEEEEcCCCCcccccc
Q 006864 227 LVGKTLAVMGF----GKVGSEVARRAKGLG-MNVIAHDPYAPADKARAVGVEL-VSFDQALATADFISLHMPLNPTTSKI 300 (628)
Q Consensus 227 l~GktiGIIGl----G~IG~~vA~~l~~~G-~~V~~~d~~~~~~~a~~~g~~~-~sl~ell~~aDvV~l~~Plt~~t~~l 300 (628)
++=|+|+|||. |..|..+.+.|+..| .+|+..+|.... -.|... -++.|+=..-|++++++| .+.+..+
T Consensus 6 f~PksIAVVGaS~~~~~~g~~v~~~L~~~~~g~v~pVnP~~~~----i~G~~~y~sl~dlp~~vDlvvi~vp-~~~~~~~ 80 (129)
T d2csua1 6 FNPKGIAVIGASNDPKKLGYEVFKNLKEYKKGKVYPVNIKEEE----VQGVKAYKSVKDIPDEIDLAIIVVP-KRFVKDT 80 (129)
T ss_dssp TSCSEEEEETCCSCTTSHHHHHHHHHTTCCSSEEEEECSSCSE----ETTEECBSSTTSCSSCCSEEEECSC-HHHHHHH
T ss_pred CCCCeEEEEccCCCCCCcHHHHHHHHHHcCCCcEEEeccCccc----cCCeEeecchhhcCCCCceEEEecC-hHHhHHH
Confidence 34589999996 899999999998766 799999987422 235543 388888889999999999 3334444
Q ss_pred ccHHHHhcCCCCcEEEEcCCC-----chhcHHHHHHHHhCC
Q 006864 301 FNDETFAKMKKGVRIVNVARG-----GVIDEEALVRALDSG 336 (628)
Q Consensus 301 i~~~~l~~mk~gailIN~aRg-----~~vde~aL~~aL~~g 336 (628)
+ ++..+.=-++++++--+-+ +...++.|.+..++.
T Consensus 81 ~-~~~~~~g~~~~vi~s~Gf~e~~~~~~~~~~~l~~~a~~~ 120 (129)
T d2csua1 81 L-IQCGEKGVKGVVIITAGFGETGEEGKREEKELVEIAHKY 120 (129)
T ss_dssp H-HHHHHHTCCEEEECCCSSTTSCHHHHHHHHHHHHHHHHH
T ss_pred H-HHHHHcCCCEEEEecccccccchhhHHHHHHHHHHHHHc
Confidence 4 3333322333444433322 223344555555553
|
| >d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Probab=91.38 E-value=0.1 Score=43.92 Aligned_cols=33 Identities=21% Similarity=0.349 Sum_probs=30.7
Q ss_pred CCeEEEEecChhHHHHHHHHHcCCCEEEEECCC
Q 006864 229 GKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPY 261 (628)
Q Consensus 229 GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~ 261 (628)
-|++.|||.|.||-++|..|+.+|.+|..+++.
T Consensus 22 p~~v~IiGgG~iG~E~A~~l~~~g~~Vtlv~~~ 54 (117)
T d1onfa2 22 SKKIGIVGSGYIAVELINVIKRLGIDSYIFARG 54 (117)
T ss_dssp CSEEEEECCSHHHHHHHHHHHTTTCEEEEECSS
T ss_pred CCEEEEECCchHHHHHHHHHHhccccceeeehh
Confidence 379999999999999999999999999999864
|
| >d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Haloarcula marismortui [TaxId: 2238]
Probab=91.37 E-value=0.094 Score=46.00 Aligned_cols=89 Identities=15% Similarity=0.173 Sum_probs=54.2
Q ss_pred CeEEEEe-cChhHHHHHHHHHcCCC--EEEEECCCCChhH----HHHc----CC----cc-cCHHHHhccCCEEEEcCCC
Q 006864 230 KTLAVMG-FGKVGSEVARRAKGLGM--NVIAHDPYAPADK----ARAV----GV----EL-VSFDQALATADFISLHMPL 293 (628)
Q Consensus 230 ktiGIIG-lG~IG~~vA~~l~~~G~--~V~~~d~~~~~~~----a~~~----g~----~~-~sl~ell~~aDvV~l~~Pl 293 (628)
.+|+||| .|.+|+.+|..+...+. ++..||.....+. +.++ .+ .. ..-.+.++.||+|+++.-.
T Consensus 1 sKV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di~~~~~~~~g~a~Dl~~~~~~~~~~~i~~~~~~~~~~aDiVvitaG~ 80 (142)
T d1o6za1 1 TKVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVRQGGYEDTAGSDVVVITAGI 80 (142)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHHTTTCCCEEEECCGGGGTTCSEEEECCCC
T ss_pred CeEEEECCCCcHHHHHHHHHHhCCCCCEEEEEecCCcccccceeecchhhcccccCCceEeeCCHHHhhhcCEEEEeccc
Confidence 3799999 59999999999987664 8999995322211 1111 11 11 1123456899999987542
Q ss_pred Ccccccc-----c--cH-------HHHhcCCCCcEEEEcC
Q 006864 294 NPTTSKI-----F--ND-------ETFAKMKKGVRIVNVA 319 (628)
Q Consensus 294 t~~t~~l-----i--~~-------~~l~~mk~gailIN~a 319 (628)
+...++ + |. ..+....|.++++.++
T Consensus 81 -~~~~g~~R~dl~~~N~~I~~~i~~~i~~~~p~~i~ivvt 119 (142)
T d1o6za1 81 -PRQPGQTRIDLAGDNAPIMEDIQSSLDEHNDDYISLTTS 119 (142)
T ss_dssp -CCCTTCCHHHHHHHHHHHHHHHHHHHHTTCSCCEEEECC
T ss_pred -ccccCCchhhHHHHHHHHHHHHHHHHHhcCCCceEEEec
Confidence 222222 1 11 2344567788888885
|
| >d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=91.26 E-value=0.25 Score=43.56 Aligned_cols=45 Identities=31% Similarity=0.412 Sum_probs=36.8
Q ss_pred cCCeEEEEecChhHHHHHHHHHcCCC-EEEEECCCC-ChhHHHHcCC
Q 006864 228 VGKTLAVMGFGKVGSEVARRAKGLGM-NVIAHDPYA-PADKARAVGV 272 (628)
Q Consensus 228 ~GktiGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~-~~~~a~~~g~ 272 (628)
.|.++.|+|.|.+|...++.++.+|. +|++.|+.. ..+.++++|+
T Consensus 28 ~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak~lGa 74 (176)
T d2fzwa2 28 PGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGA 74 (176)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTC
T ss_pred CCCEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHHHHHHHhCC
Confidence 47899999999999999999999996 677788765 3455677775
|
| >d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.26 E-value=0.1 Score=44.18 Aligned_cols=32 Identities=28% Similarity=0.368 Sum_probs=29.8
Q ss_pred CeEEEEecChhHHHHHHHHHcCCCEEEEECCC
Q 006864 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPY 261 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~ 261 (628)
|++.|||.|.||-++|..|..+|++|..+++.
T Consensus 24 ~~~vIiG~G~ig~E~A~~l~~lG~~Vtii~~~ 55 (122)
T d1v59a2 24 KRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQ 55 (122)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred CeEEEECCCchHHHHHHHHHhhCcceeEEEec
Confidence 79999999999999999999999999988754
|
| >d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=91.23 E-value=0.16 Score=44.56 Aligned_cols=95 Identities=21% Similarity=0.212 Sum_probs=57.8
Q ss_pred CeEEEEec-ChhHHHHHHHHH---cCCCEEEEECCCCCh-hHHHHc-CC--c-------ccCHHHHhccCCEEEEcCC--
Q 006864 230 KTLAVMGF-GKVGSEVARRAK---GLGMNVIAHDPYAPA-DKARAV-GV--E-------LVSFDQALATADFISLHMP-- 292 (628)
Q Consensus 230 ktiGIIGl-G~IG~~vA~~l~---~~G~~V~~~d~~~~~-~~a~~~-g~--~-------~~sl~ell~~aDvV~l~~P-- 292 (628)
++|+|||. |++|+.+|..|. .+.-++..+|..... ..+.++ .. . ..+..+.++.||+|+++.-
T Consensus 1 MKV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~~~~~g~a~Dl~h~~~~~~~~~~~~~~~~~~~~~aDvvvitaG~~ 80 (145)
T d2cmda1 1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDATPALEGADVVLISAGVR 80 (145)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSSTTHHHHHHHHHTSCSSCEEEEECSSCCHHHHTTCSEEEECCSCC
T ss_pred CEEEEEcCCChHHHHHHHHHHhCCCCCcEEEEecccccchhHHHHHHCCccccCCcEEEcCCCccccCCCCEEEECCCcc
Confidence 47999995 999999999864 356799999964322 111121 11 0 1123457899999999873
Q ss_pred CCcc-ccc-cc--cH-------HHHhcCCCCcEEEEcCCCchhcH
Q 006864 293 LNPT-TSK-IF--ND-------ETFAKMKKGVRIVNVARGGVIDE 326 (628)
Q Consensus 293 lt~~-t~~-li--~~-------~~l~~mk~gailIN~aRg~~vde 326 (628)
.++. ++. ++ |. +.+.+..|.+++|.++ ..+|.
T Consensus 81 ~k~g~~R~dl~~~N~~i~~~v~~~i~~~~p~aivivvt--NPvD~ 123 (145)
T d2cmda1 81 RKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIIT--NPVNT 123 (145)
T ss_dssp CCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECS--SSHHH
T ss_pred CCCCcchhhHHHHHHHHHHHHHHHHHhhCCCcEEEEcc--CCchH
Confidence 2222 221 22 11 2344557788899986 44554
|
| >d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Type II 3-hydroxyacyl-CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.21 E-value=0.11 Score=49.03 Aligned_cols=37 Identities=24% Similarity=0.279 Sum_probs=33.2
Q ss_pred eecCCeEEEEecC-hhHHHHHHHHHcCCCEEEEECCCC
Q 006864 226 SLVGKTLAVMGFG-KVGSEVARRAKGLGMNVIAHDPYA 262 (628)
Q Consensus 226 ~l~GktiGIIGlG-~IG~~vA~~l~~~G~~V~~~d~~~ 262 (628)
.|+||++.|.|-+ .||+++|++|...|++|+..|+..
T Consensus 2 slkGKvalITGas~GIG~aia~~la~~G~~V~~~~r~~ 39 (248)
T d2o23a1 2 SVKGLVAVITGGASGLGLATAERLVGQGASAVLLDLPN 39 (248)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTT
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCh
Confidence 6899999999766 499999999999999999998764
|
| >d2nvwa1 c.2.1.3 (A:2-154,A:374-457) Galactose/lactose metabolism regulatory protein GAL80 {Yeast (Kluyveromyces lactis) [TaxId: 28985]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Galactose/lactose metabolism regulatory protein GAL80 species: Yeast (Kluyveromyces lactis) [TaxId: 28985]
Probab=90.98 E-value=0.14 Score=48.18 Aligned_cols=63 Identities=11% Similarity=0.183 Sum_probs=42.3
Q ss_pred CeEEEEecChhH----HHHHHHHHcC--CCEEEE-ECCCCCh--hHHHHcCCc----ccCHHHHhc--cCCEEEEcCC
Q 006864 230 KTLAVMGFGKVG----SEVARRAKGL--GMNVIA-HDPYAPA--DKARAVGVE----LVSFDQALA--TADFISLHMP 292 (628)
Q Consensus 230 ktiGIIGlG~IG----~~vA~~l~~~--G~~V~~-~d~~~~~--~~a~~~g~~----~~sl~ell~--~aDvV~l~~P 292 (628)
.+|||||+|.+| +.-...++.. ++++.+ +|+.... ..++..+.. +.++++++. +-|+|++++|
T Consensus 17 irvgiIG~G~~~~~~~~~h~~ai~~~~~~~~ivav~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~iD~V~i~tp 94 (237)
T d2nvwa1 17 IRVGFVGLTSGKSWVAKTHFLAIQQLSSQFQIVALYNPTLKSSLQTIEQLQLKHATGFDSLESFAQYKDIDMIVVSVK 94 (237)
T ss_dssp EEEEEECCCSTTSHHHHTHHHHHHHTTTTEEEEEEECSCHHHHHHHHHHTTCTTCEEESCHHHHHHCTTCSEEEECSC
T ss_pred eEEEEEecCccccHHHHHHHHHHHhcCCCeEEEEEEcCCHHHHHHHHHhcccccceeecchhhcccccccceeeccCC
Confidence 479999999754 4444456554 578775 7886522 233455543 348999986 5789999998
|
| >d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=90.96 E-value=0.12 Score=43.33 Aligned_cols=33 Identities=27% Similarity=0.501 Sum_probs=30.5
Q ss_pred CeEEEEecChhHHHHHHHHHcCCCEEEEECCCC
Q 006864 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA 262 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~ 262 (628)
|++.|||-|.+|-++|..|+.+|.+|..+++..
T Consensus 22 ~~vvIiGgG~ig~E~A~~l~~~G~~Vtlve~~~ 54 (116)
T d1gesa2 22 ERVAVVGAGYIGVELGGVINGLGAKTHLFEMFD 54 (116)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred CEEEEECCChhhHHHHHHhhccccEEEEEeecc
Confidence 789999999999999999999999999997653
|
| >d1ekxa2 c.78.1.1 (A:151-310) Aspartate carbamoyltransferase catalytic subunit {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Aspartate carbamoyltransferase catalytic subunit species: Escherichia coli [TaxId: 562]
Probab=90.86 E-value=0.27 Score=43.38 Aligned_cols=93 Identities=13% Similarity=0.193 Sum_probs=61.8
Q ss_pred ecCCeEEEEec---ChhHHHHHHHHHcCC-CEEEEECCCC--C-h---hHHHHcCCc---ccCHHHHhccCCEEEEcCCC
Q 006864 227 LVGKTLAVMGF---GKVGSEVARRAKGLG-MNVIAHDPYA--P-A---DKARAVGVE---LVSFDQALATADFISLHMPL 293 (628)
Q Consensus 227 l~GktiGIIGl---G~IG~~vA~~l~~~G-~~V~~~d~~~--~-~---~~a~~~g~~---~~sl~ell~~aDvV~l~~Pl 293 (628)
+.|.+|++||= |++..++...+..|| +.+.+..|.. + . ...+..|.. ..+++++++++|+|..-.-.
T Consensus 2 l~gl~i~~vGD~~nsrv~~Sli~~l~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~d~~~a~~~aDvvy~~~~~ 81 (160)
T d1ekxa2 2 LDNLHVAMVGDLKYGRTVHSLTQALAKFDGNRFYFIAPDALAMPQYILDMLDEKGIAWSLHSSIEEVMAEVDILYMTRVQ 81 (160)
T ss_dssp SSSCEEEEESCTTTCHHHHHHHHHHTTSSSCEEEEECCGGGCCCHHHHHHHHHTTCCEEECSCSTTTGGGCSEEEECCCC
T ss_pred CCCCEEEEEcCCCccHHHHHHHHHHHHcCCCeEEeeccchhhhhHHHHHHHhhhccccccccCHHHHhCcCceEEeeccc
Confidence 67999999996 679999999999997 5566666532 1 1 123344443 23789999999999865332
Q ss_pred Ccc----------ccccccHHHHhcCCCCcEEEEcC
Q 006864 294 NPT----------TSKIFNDETFAKMKKGVRIVNVA 319 (628)
Q Consensus 294 t~~----------t~~li~~~~l~~mk~gailIN~a 319 (628)
... ....++.+.++.++++++|.-|.
T Consensus 82 ~e~~~~~~~~~~~~~~~~~~~~~~~a~~~~i~mHcL 117 (160)
T d1ekxa2 82 KERLDPSEYANVKAQFVLRASDLHNAKANMKVLHPL 117 (160)
T ss_dssp GGGCCGGGGGGCSCSCCBCGGGGTTCCTTCEEECCS
T ss_pred ccccchHHHHHHHHHhhccHHHHHhcCcceeeecCC
Confidence 111 11233566667777777777764
|
| >d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=90.72 E-value=0.1 Score=43.48 Aligned_cols=33 Identities=27% Similarity=0.381 Sum_probs=30.1
Q ss_pred CCeEEEEecChhHHHHHHHHHcCCCEEEEECCC
Q 006864 229 GKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPY 261 (628)
Q Consensus 229 GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~ 261 (628)
-|++.|||.|.||-++|..+..+|.+|..+.+.
T Consensus 22 p~~v~IiGgG~ig~E~A~~l~~~G~~Vtlve~~ 54 (117)
T d1ebda2 22 PKSLVVIGGGYIGIELGTAYANFGTKVTILEGA 54 (117)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred CCeEEEECCCccceeeeeeecccccEEEEEEec
Confidence 379999999999999999999999999988644
|
| >d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Helicobacter pylori [TaxId: 210]
Probab=90.59 E-value=0.15 Score=48.51 Aligned_cols=36 Identities=17% Similarity=0.192 Sum_probs=32.4
Q ss_pred ecCCeEEEEec-C--hhHHHHHHHHHcCCCEEEEECCCC
Q 006864 227 LVGKTLAVMGF-G--KVGSEVARRAKGLGMNVIAHDPYA 262 (628)
Q Consensus 227 l~GktiGIIGl-G--~IG~~vA~~l~~~G~~V~~~d~~~ 262 (628)
|+||++.|.|- | -||.++|++|...|++|+..++..
T Consensus 3 L~gK~alITGaag~~GIG~AiA~~la~~Ga~V~i~~r~~ 41 (274)
T d2pd4a1 3 LKGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNE 41 (274)
T ss_dssp TTTCEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESST
T ss_pred CCCCEEEEECCCCCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 78999999996 4 499999999999999999988764
|
| >d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase species: Xanthobacter sp., py2 [TaxId: 35809]
Probab=90.46 E-value=0.15 Score=42.49 Aligned_cols=34 Identities=21% Similarity=0.140 Sum_probs=31.5
Q ss_pred cCCeEEEEecChhHHHHHHHHHcCCCEEEEECCC
Q 006864 228 VGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPY 261 (628)
Q Consensus 228 ~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~ 261 (628)
.+|++.|||-|.||-++|..|+.+|.+|..+.+.
T Consensus 21 ~~~~vvVvGgG~ig~E~A~~l~~~g~~vt~i~~~ 54 (121)
T d1mo9a2 21 PGSTVVVVGGSKTAVEYGCFFNATGRRTVMLVRT 54 (121)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcchhheEeecc
Confidence 4799999999999999999999999999998764
|
| >d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]
Probab=90.41 E-value=0.12 Score=44.94 Aligned_cols=35 Identities=26% Similarity=0.396 Sum_probs=31.0
Q ss_pred cCCeEEEEecChhHHHHHHHHHcCC--CEEEEECCCC
Q 006864 228 VGKTLAVMGFGKVGSEVARRAKGLG--MNVIAHDPYA 262 (628)
Q Consensus 228 ~GktiGIIGlG~IG~~vA~~l~~~G--~~V~~~d~~~ 262 (628)
.||+|.|||-|.+|-++|..|+.++ .+|..+++..
T Consensus 1 ~gkrivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~ 37 (186)
T d1fcda1 1 AGRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNT 37 (186)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCS
T ss_pred CCCcEEEECccHHHHHHHHHHHHcCCCCcEEEEECCC
Confidence 4899999999999999999999776 6899988754
|
| >d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Mannitol dehydrogenase species: Mushroom (Agaricus bisporus) [TaxId: 5341]
Probab=90.30 E-value=0.23 Score=47.26 Aligned_cols=40 Identities=30% Similarity=0.365 Sum_probs=34.9
Q ss_pred eeeecCCeEEEEecCh-hHHHHHHHHHcCCCEEEEECCCCC
Q 006864 224 GVSLVGKTLAVMGFGK-VGSEVARRAKGLGMNVIAHDPYAP 263 (628)
Q Consensus 224 g~~l~GktiGIIGlG~-IG~~vA~~l~~~G~~V~~~d~~~~ 263 (628)
-.++.||++.|.|-+. ||+++|++|...|++|+..|+...
T Consensus 4 ~m~l~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~ 44 (260)
T d1h5qa_ 4 TISFVNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAA 44 (260)
T ss_dssp EECCTTEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCT
T ss_pred cccCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence 3468999999998765 999999999999999999988753
|
| >d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Retinal dehydrogenase/reductase 3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.22 E-value=0.11 Score=49.71 Aligned_cols=38 Identities=26% Similarity=0.385 Sum_probs=34.3
Q ss_pred eeeecCCeEEEEec-ChhHHHHHHHHHcCCCEEEEECCC
Q 006864 224 GVSLVGKTLAVMGF-GKVGSEVARRAKGLGMNVIAHDPY 261 (628)
Q Consensus 224 g~~l~GktiGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~ 261 (628)
|..|.||++.|-|- +.||+++|++|...|++|+..|+.
T Consensus 1 g~rl~GK~alITGas~GIG~aia~~la~~Ga~V~i~~r~ 39 (250)
T d1ydea1 1 GTRYAGKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKD 39 (250)
T ss_dssp CCTTTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred CCCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence 45789999999985 689999999999999999999875
|
| >d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.11 E-value=0.15 Score=43.21 Aligned_cols=32 Identities=19% Similarity=0.160 Sum_probs=30.2
Q ss_pred CeEEEEecChhHHHHHHHHHcCCCEEEEECCC
Q 006864 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPY 261 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~ 261 (628)
|++.|||-|.||-++|..++.+|.+|..+.+.
T Consensus 23 k~vvIvGgG~iG~E~A~~l~~~G~~Vtlv~~~ 54 (125)
T d3grsa2 23 GRSVIVGAGYIAVEMAGILSALGSKTSLMIRH 54 (125)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred CEEEEEcCCccHHHHHHHHhcCCcEEEEEeec
Confidence 78999999999999999999999999998765
|
| >d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 17-beta-hydroxysteroid dehydrogenase type XI species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.08 E-value=0.097 Score=49.83 Aligned_cols=87 Identities=15% Similarity=0.126 Sum_probs=54.6
Q ss_pred eecCCeEEEEecCh-hHHHHHHHHHcCCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEcCCCCcc--cccccc
Q 006864 226 SLVGKTLAVMGFGK-VGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPT--TSKIFN 302 (628)
Q Consensus 226 ~l~GktiGIIGlG~-IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~sl~ell~~aDvV~l~~Plt~~--t~~li~ 302 (628)
+|.||++.|-|.+. ||+++|+.|...|++|+..|+.. +..++.- ..+.+ ...++..+.|-+++. ...++
T Consensus 4 ~l~Gkv~lITGas~GIG~~ia~~la~~G~~V~l~~r~~--~~l~~~~---~~~~~--~~~~~~~~~~Dvs~~~~v~~~~- 75 (244)
T d1yb1a_ 4 SVTGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINK--HGLEETA---AKCKG--LGAKVHTFVVDCSNREDIYSSA- 75 (244)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH--HHHHHHH---HHHHH--TTCCEEEEECCTTCHHHHHHHH-
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH--HHHHHHH---HHHHh--cCCcEEEEEeeCCCHHHHHHHH-
Confidence 58999999998876 99999999999999999999863 2211110 01111 123566666655543 12222
Q ss_pred HHHHhcCCCCcEEEEcCC
Q 006864 303 DETFAKMKKGVRIVNVAR 320 (628)
Q Consensus 303 ~~~l~~mk~gailIN~aR 320 (628)
+...+.+.+=-++||++.
T Consensus 76 ~~i~~~~g~idilinnag 93 (244)
T d1yb1a_ 76 KKVKAEIGDVSILVNNAG 93 (244)
T ss_dssp HHHHHHTCCCSEEEECCC
T ss_pred HHHHHHcCCCceeEeecc
Confidence 233445555567777763
|
| >d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.98 E-value=0.23 Score=46.91 Aligned_cols=36 Identities=22% Similarity=0.366 Sum_probs=32.6
Q ss_pred eecCCeEEEEecC-hhHHHHHHHHHcCCCEEEEECCC
Q 006864 226 SLVGKTLAVMGFG-KVGSEVARRAKGLGMNVIAHDPY 261 (628)
Q Consensus 226 ~l~GktiGIIGlG-~IG~~vA~~l~~~G~~V~~~d~~ 261 (628)
+|.||++.|.|-+ .||+++|++|...|++|+..|+.
T Consensus 2 dl~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~ 38 (242)
T d1cyda_ 2 NFSGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRT 38 (242)
T ss_dssp CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECC
Confidence 5889999999865 69999999999999999999875
|
| >d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase species: Streptomyces hydrogenans [TaxId: 1905]
Probab=89.80 E-value=0.12 Score=49.47 Aligned_cols=37 Identities=35% Similarity=0.498 Sum_probs=33.3
Q ss_pred eecCCeEEEEecC-hhHHHHHHHHHcCCCEEEEECCCC
Q 006864 226 SLVGKTLAVMGFG-KVGSEVARRAKGLGMNVIAHDPYA 262 (628)
Q Consensus 226 ~l~GktiGIIGlG-~IG~~vA~~l~~~G~~V~~~d~~~ 262 (628)
+|.||++.|.|-+ .||+++|++|...|++|+..|+..
T Consensus 2 dL~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~ 39 (254)
T d1hdca_ 2 DLSGKTVIITGGARGLGAEAARQAVAAGARVVLADVLD 39 (254)
T ss_dssp CCCCSEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CCCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence 5899999999876 599999999999999999998763
|
| >d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Thermus thermophilus [TaxId: 274]
Probab=89.68 E-value=0.17 Score=47.90 Aligned_cols=38 Identities=32% Similarity=0.376 Sum_probs=33.6
Q ss_pred eeeecCCeEEEEecC---hhHHHHHHHHHcCCCEEEEECCC
Q 006864 224 GVSLVGKTLAVMGFG---KVGSEVARRAKGLGMNVIAHDPY 261 (628)
Q Consensus 224 g~~l~GktiGIIGlG---~IG~~vA~~l~~~G~~V~~~d~~ 261 (628)
..+|.||++.|.|.+ .||+++|++|...|++|+..++.
T Consensus 3 ~~~L~gK~alITGas~~~GIG~aiA~~la~~Ga~V~i~~~~ 43 (256)
T d1ulua_ 3 TVDLSGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQA 43 (256)
T ss_dssp EECCTTCEEEEESCCCSSSHHHHHHHHHHHTTCEEEEEESS
T ss_pred CcCCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCc
Confidence 457999999999974 59999999999999999888765
|
| >d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Gluconate 5-dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=89.48 E-value=0.25 Score=46.89 Aligned_cols=85 Identities=18% Similarity=0.205 Sum_probs=53.0
Q ss_pred eecCCeEEEEecC-hhHHHHHHHHHcCCCEEEEECCCCChhHHHHcCCcccCHHHHhc--cCCEEEEcCCCCcc--cccc
Q 006864 226 SLVGKTLAVMGFG-KVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALA--TADFISLHMPLNPT--TSKI 300 (628)
Q Consensus 226 ~l~GktiGIIGlG-~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~sl~ell~--~aDvV~l~~Plt~~--t~~l 300 (628)
+|+||++.|-|-+ .||+++|++|...|++|+..|+.... ..+ ..+++.+ ..++..+.+-++.+ .+.+
T Consensus 2 ~l~gK~~lITGas~GIG~aia~~la~~Ga~V~i~~r~~~~--~~~------~~~~l~~~~g~~~~~~~~Dv~~~~~v~~~ 73 (251)
T d1vl8a_ 2 DLRGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEE--ASE------AAQKLTEKYGVETMAFRCDVSNYEEVKKL 73 (251)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHH--HHH------HHHHHHHHHCCCEEEEECCTTCHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHH--HHH------HHHHHHHHhCCcEEEEEccCCCHHHHHHH
Confidence 6899999999875 59999999999999999999876321 111 0122222 24666676666542 2233
Q ss_pred ccHHHHhcCCCCcEEEEcC
Q 006864 301 FNDETFAKMKKGVRIVNVA 319 (628)
Q Consensus 301 i~~~~l~~mk~gailIN~a 319 (628)
+. +..+.+.+=-++||++
T Consensus 74 ~~-~~~~~~g~iDiLVnnA 91 (251)
T d1vl8a_ 74 LE-AVKEKFGKLDTVVNAA 91 (251)
T ss_dssp HH-HHHHHHSCCCEEEECC
T ss_pred HH-HHHHHcCCCCEEEECC
Confidence 32 2233333334677764
|
| >d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=89.44 E-value=0.2 Score=43.96 Aligned_cols=104 Identities=15% Similarity=0.168 Sum_probs=57.2
Q ss_pred CeEEEEec-ChhHHHHHHHHHc---CC-CEEEEECCCCCh--hH-HHHcCCccc-C-HHHHhccCCEEEEcCCCCccccc
Q 006864 230 KTLAVMGF-GKVGSEVARRAKG---LG-MNVIAHDPYAPA--DK-ARAVGVELV-S-FDQALATADFISLHMPLNPTTSK 299 (628)
Q Consensus 230 ktiGIIGl-G~IG~~vA~~l~~---~G-~~V~~~d~~~~~--~~-a~~~g~~~~-s-l~ell~~aDvV~l~~Plt~~t~~ 299 (628)
|+|||||. |.+|+++.++|.. |- .++.++...... .. ......... . -.+.+..+|++++++|... .+.
T Consensus 2 kkVaIvGATG~VGqeli~~Ll~~~~~p~~~l~~~~ss~s~g~~~~~~~~~~~~~~~~~~~~~~~~DivF~a~~~~~-s~~ 80 (146)
T d1t4ba1 2 QNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQLGQAAPSFGGTTGTLQDAFDLEALKALDIIVTCQGGDY-TNE 80 (146)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSSTTSBCCGGGTCCCBCEETTCHHHHHTCSEEEECSCHHH-HHH
T ss_pred cEEEEECCccHHHHHHHHHHHhCCCCCeeEEEEeeccccccccccccCCceeeecccchhhhhcCcEEEEecCchH-HHH
Confidence 58999987 9999999987643 22 466655433211 11 111111111 1 2245789999999998332 121
Q ss_pred cccHHHHhcCCCCcEEEEcCCCc-----------hhcHHHHHHHHhCC
Q 006864 300 IFNDETFAKMKKGVRIVNVARGG-----------VIDEEALVRALDSG 336 (628)
Q Consensus 300 li~~~~l~~mk~gailIN~aRg~-----------~vde~aL~~aL~~g 336 (628)
+ ...+..-+.++++|+.+.-- =|+.+.|..++++|
T Consensus 81 ~--~~~~~~~g~~~~VID~Ss~fR~~~dvplviPEVN~~~i~~~~~~g 126 (146)
T d1t4ba1 81 I--YPKLRESGWQGYWIDAASSLRMKDDAIIILDPVNQDVITDGLNNG 126 (146)
T ss_dssp H--HHHHHHTTCCCEEEECSSTTTTCTTEEEECHHHHHHHHHHHHHTT
T ss_pred h--hHHHHhcCCCeecccCCcccccCCCCcEECCCcCHHHHHHHHHcC
Confidence 1 22222233346788877422 23555676777764
|
| >d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=89.32 E-value=0.12 Score=43.79 Aligned_cols=32 Identities=25% Similarity=0.241 Sum_probs=29.0
Q ss_pred CeEEEEecChhHHHHHHHHHcCCCEEEEECCC
Q 006864 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPY 261 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~ 261 (628)
+++.|||-|.||-++|..++.+|.+|..+.+.
T Consensus 21 ~~vvIIGgG~iG~E~A~~l~~lG~~Vtii~~~ 52 (122)
T d1h6va2 21 GKTLVVGASYVALECAGFLAGIGLDVTVMVRS 52 (122)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CeEEEECCCccHHHHHHHHhhcCCeEEEEEec
Confidence 68999999999999999999999999887543
|
| >d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Pinoresinol-lariciresinol reductase species: Giant arborvitae (Thuja plicata) [TaxId: 3316]
Probab=89.32 E-value=0.39 Score=45.21 Aligned_cols=66 Identities=18% Similarity=0.272 Sum_probs=47.2
Q ss_pred CeEEEEe-cChhHHHHHHHHHcCCCEEEEECCCCCh---hH------HHHcCCccc--------CHHHHhccCCEEEEcC
Q 006864 230 KTLAVMG-FGKVGSEVARRAKGLGMNVIAHDPYAPA---DK------ARAVGVELV--------SFDQALATADFISLHM 291 (628)
Q Consensus 230 ktiGIIG-lG~IG~~vA~~l~~~G~~V~~~d~~~~~---~~------a~~~g~~~~--------sl~ell~~aDvV~l~~ 291 (628)
++|.|+| .|.||+.+++.|...|++|++.++.... .. ....+++.+ ++.+.++.+|.++.+.
T Consensus 4 ~KILVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~v~~v~~d~~d~~~~~~~~~~~~~~~~~~ 83 (312)
T d1qyda_ 4 SRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLIEASLDDHQRLVDALKQVDVVISAL 83 (312)
T ss_dssp CCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCCSSCHHHHHHHHHHHTTTCEEECCCSSCHHHHHHHHTTCSEEEECC
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCcccchhHHHHHhhhccCCcEEEEeecccchhhhhhccCcchhhhhh
Confidence 5799999 6999999999999999999998875421 11 122334322 3567788889888887
Q ss_pred CCCc
Q 006864 292 PLNP 295 (628)
Q Consensus 292 Plt~ 295 (628)
+...
T Consensus 84 ~~~~ 87 (312)
T d1qyda_ 84 AGGV 87 (312)
T ss_dssp CCSS
T ss_pred hhcc
Confidence 7543
|
| >d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=89.20 E-value=0.18 Score=42.60 Aligned_cols=34 Identities=26% Similarity=0.294 Sum_probs=31.2
Q ss_pred cCCeEEEEecChhHHHHHHHHHcCCCEEEEECCC
Q 006864 228 VGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPY 261 (628)
Q Consensus 228 ~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~ 261 (628)
.+|++.|||-|.+|-++|..|..+|.+|..+++.
T Consensus 29 ~~k~vvViGgG~iG~E~A~~l~~~g~~Vtlie~~ 62 (123)
T d1nhpa2 29 EVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDIL 62 (123)
T ss_dssp TCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred CCCEEEEECChHHHHHHHHHhhccceEEEEEEec
Confidence 4689999999999999999999999999998654
|
| >d1phza1 d.58.18.3 (A:19-115) Phenylalanine hydroxylase N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: ACT-like family: Phenylalanine metabolism regulatory domain domain: Phenylalanine hydroxylase N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=89.18 E-value=0.26 Score=40.33 Aligned_cols=54 Identities=11% Similarity=0.227 Sum_probs=40.3
Q ss_pred cEEEEeccCCCCchhhHHhhhhcCCccccceEEeee-ecCccEEEEEEeCCCCCH
Q 006864 559 NLILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRT-FRRNHGIMAIGVDEEPNQ 612 (628)
Q Consensus 559 ~~Llv~~~D~PGvIa~V~~iL~~~~INIa~m~v~R~-~~gg~Al~~i~vD~~~~~ 612 (628)
..|++..+|+||.+..+.+.+++++||+..++---. ...++....++++....+
T Consensus 17 tSl~f~~~~~pGaL~~vL~~f~~~~INLt~IeSRP~~~~~~~Y~F~id~eg~~~~ 71 (97)
T d1phza1 17 ISLIFSLKEEVGALAKVLRLFEENDINLTHIESRPSRLNKDEYEFFTYLDKRTKP 71 (97)
T ss_dssp EEEEEEEECCTTHHHHHHHHHHTTTCCTTSEEEEECSSCTTEEEEEECBCGGGHH
T ss_pred EEEEEEeCCCCCHHHHHHHHHHHCCCCEEEEEeeccCCCCceEEEEEEcccCChH
Confidence 456667789999999999999999999999986322 233455667777665333
|
| >d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Negative transcriptional regulator NmrA species: Aspergillus nidulans [TaxId: 162425]
Probab=89.04 E-value=0.18 Score=49.54 Aligned_cols=67 Identities=25% Similarity=0.296 Sum_probs=48.1
Q ss_pred CCeEEEEe-cChhHHHHHHHHHcCCCEEEEECCCCChhHHH----HcCCccc-----C----HHHHhccCCEEEEcCCCC
Q 006864 229 GKTLAVMG-FGKVGSEVARRAKGLGMNVIAHDPYAPADKAR----AVGVELV-----S----FDQALATADFISLHMPLN 294 (628)
Q Consensus 229 GktiGIIG-lG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~----~~g~~~~-----s----l~ell~~aDvV~l~~Plt 294 (628)
-|||.|+| .|.||+.+++.|.+.|++|.+.-|........ ..+++.+ + ++.++..+|.+++..+..
T Consensus 3 kktIlVtGatG~iG~~lv~~Ll~~G~~V~~l~R~~~~~~~~~~~~~~~v~~~~gD~~d~~~~~~~a~~~~~~~~~~~~~~ 82 (350)
T d1xgka_ 3 KKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGLIAEELQAIPNVTLFQGPLLNNVPLMDTLFEGAHLAFINTTSQ 82 (350)
T ss_dssp CCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCSCSHHHHHHHTSTTEEEEESCCTTCHHHHHHHHTTCSEEEECCCST
T ss_pred CCEEEEECCChHHHHHHHHHHHhCCCeEEEEECCcchhhhhhhcccCCCEEEEeeCCCcHHHHHHHhcCCceEEeecccc
Confidence 48999998 69999999999999999998886544322221 1244321 1 567888999998877654
Q ss_pred c
Q 006864 295 P 295 (628)
Q Consensus 295 ~ 295 (628)
.
T Consensus 83 ~ 83 (350)
T d1xgka_ 83 A 83 (350)
T ss_dssp T
T ss_pred c
Confidence 4
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=89.02 E-value=0.16 Score=46.50 Aligned_cols=46 Identities=39% Similarity=0.435 Sum_probs=38.3
Q ss_pred cCCeEEEEecChhHHHHHHHHHcCCC-EEEEECCCC-ChhHHHHcCCc
Q 006864 228 VGKTLAVMGFGKVGSEVARRAKGLGM-NVIAHDPYA-PADKARAVGVE 273 (628)
Q Consensus 228 ~GktiGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~-~~~~a~~~g~~ 273 (628)
.|.++.|+|.|.||...++.++.+|. +|++.|+.. ..+.++++|+.
T Consensus 25 ~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~Ga~ 72 (195)
T d1kola2 25 PGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQGFE 72 (195)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCE
T ss_pred CCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhhcccc
Confidence 47899999999999999999999887 888999875 34567777764
|
| >d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Probab=88.87 E-value=0.18 Score=42.36 Aligned_cols=32 Identities=28% Similarity=0.398 Sum_probs=29.3
Q ss_pred CCeEEEEecChhHHHHHHHHHcCCCEEEEECC
Q 006864 229 GKTLAVMGFGKVGSEVARRAKGLGMNVIAHDP 260 (628)
Q Consensus 229 GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~ 260 (628)
.+++.|||-|.||-++|..++.+|.+|..+.+
T Consensus 22 p~~i~IiG~G~ig~E~A~~l~~~G~~Vtiv~~ 53 (119)
T d3lada2 22 PGKLGVIGAGVIGLELGSVWARLGAEVTVLEA 53 (119)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEEES
T ss_pred CCeEEEECCChHHHHHHHHHHHcCCceEEEEe
Confidence 48899999999999999999999999988753
|
| >d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein At5g02240 (T7H20 290) species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=88.85 E-value=0.2 Score=44.98 Aligned_cols=63 Identities=17% Similarity=0.145 Sum_probs=39.8
Q ss_pred CeEEEEe-cChhHHHHHHHHHcCCCE--EEEECCCCChhHHHHcCCcc--------cCHHHHhccCCEEEEcCC
Q 006864 230 KTLAVMG-FGKVGSEVARRAKGLGMN--VIAHDPYAPADKARAVGVEL--------VSFDQALATADFISLHMP 292 (628)
Q Consensus 230 ktiGIIG-lG~IG~~vA~~l~~~G~~--V~~~d~~~~~~~a~~~g~~~--------~sl~ell~~aDvV~l~~P 292 (628)
+||.|.| .|.||+.++++|...|.+ |+...+..........+++. .++.++++.+|.|+.+..
T Consensus 4 ~tVlVtGatG~iG~~l~~~Ll~~g~~v~v~~~~R~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~d~vi~~a~ 77 (252)
T d2q46a1 4 PTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKIGGEADVFIGDITDADSINPAFQGIDALVILTS 77 (252)
T ss_dssp CEEEEESTTSTTHHHHHHHHHHTTTTCEEEEEESCHHHHHHTTCCTTEEECCTTSHHHHHHHHTTCSEEEECCC
T ss_pred CEEEEECCccHHHHHHHHHHHHCCCcEEEEEEcCCHHHHHhccCCcEEEEeeeccccccccccccceeeEEEEe
Confidence 6899998 799999999999988854 55555543211111112221 135566778888766543
|
| >d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=88.79 E-value=0.19 Score=44.66 Aligned_cols=44 Identities=27% Similarity=0.282 Sum_probs=33.8
Q ss_pred cCCeEEEEe-cChhHHHHHHHHHcCCCEEEEECCCCC-hhHHHHcC
Q 006864 228 VGKTLAVMG-FGKVGSEVARRAKGLGMNVIAHDPYAP-ADKARAVG 271 (628)
Q Consensus 228 ~GktiGIIG-lG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~g 271 (628)
.|.+|.|.| .|.+|..+.+.++.+|++|++.+.+.. .+..+++|
T Consensus 28 ~g~~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~~~~s~~k~~~~~~lG 73 (179)
T d1qora2 28 PDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALKAG 73 (179)
T ss_dssp TTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHT
T ss_pred CCCEEEEEccccccchHHHHHHHHhCCeEeecccchHHHHHHHhcC
Confidence 478999995 555999999999999999999987742 23344444
|
| >d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=88.64 E-value=0.2 Score=42.20 Aligned_cols=34 Identities=26% Similarity=0.387 Sum_probs=31.2
Q ss_pred CCeEEEEecChhHHHHHHHHHcCCCEEEEECCCC
Q 006864 229 GKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA 262 (628)
Q Consensus 229 GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~ 262 (628)
+|++.|||-|.+|-++|..|+.+|.+|..+++..
T Consensus 30 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~ 63 (121)
T d1d7ya2 30 QSRLLIVGGGVIGLELAATARTAGVHVSLVETQP 63 (121)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred CCeEEEECcchhHHHHHHHhhcccceEEEEeecc
Confidence 5899999999999999999999999999987653
|
| >d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=88.61 E-value=0.13 Score=43.46 Aligned_cols=33 Identities=27% Similarity=0.329 Sum_probs=30.4
Q ss_pred CCeEEEEecChhHHHHHHHHHcCCCEEEEECCC
Q 006864 229 GKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPY 261 (628)
Q Consensus 229 GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~ 261 (628)
.+++.|||.|.||-++|..+..+|++|....+.
T Consensus 25 p~~~viiG~G~iglE~A~~~~~~G~~Vtvi~~~ 57 (123)
T d1dxla2 25 PKKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFA 57 (123)
T ss_dssp CSEEEESCCSHHHHHHHHHHHHHTCEEEEECSS
T ss_pred CCeEEEEccchHHHHHHHHHHhcCCeEEEEEEc
Confidence 479999999999999999999999999998654
|
| >d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.55 E-value=0.31 Score=45.94 Aligned_cols=36 Identities=25% Similarity=0.397 Sum_probs=32.7
Q ss_pred eecCCeEEEEecC-hhHHHHHHHHHcCCCEEEEECCC
Q 006864 226 SLVGKTLAVMGFG-KVGSEVARRAKGLGMNVIAHDPY 261 (628)
Q Consensus 226 ~l~GktiGIIGlG-~IG~~vA~~l~~~G~~V~~~d~~ 261 (628)
.|.||++.|.|-+ .||+++|++|...|++|+..|+.
T Consensus 4 ~L~GK~~lITGas~GIG~aia~~la~~G~~V~~~~r~ 40 (244)
T d1pr9a_ 4 FLAGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRT 40 (244)
T ss_dssp CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECC
Confidence 5899999999765 69999999999999999999976
|
| >d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Escherichia coli [TaxId: 562]
Probab=88.50 E-value=0.19 Score=47.57 Aligned_cols=36 Identities=25% Similarity=0.343 Sum_probs=31.9
Q ss_pred eecCCeEEEEec-ChhHHHHHHHHHcCCCEEEEECCC
Q 006864 226 SLVGKTLAVMGF-GKVGSEVARRAKGLGMNVIAHDPY 261 (628)
Q Consensus 226 ~l~GktiGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~ 261 (628)
+|.||++.|-|- +.||+++|++|...|++|+..|+.
T Consensus 1 dl~gK~alITGas~GIG~a~a~~l~~~G~~Vv~~~r~ 37 (243)
T d1q7ba_ 1 NFEGKIALVTGASRGIGRAIAETLAARGAKVIGTATS 37 (243)
T ss_dssp CCTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCC
Confidence 478999999875 569999999999999999999876
|
| >d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: 2,4-dienoyl-CoA reductase, middle domain species: Escherichia coli [TaxId: 562]
Probab=88.21 E-value=0.22 Score=45.24 Aligned_cols=38 Identities=32% Similarity=0.357 Sum_probs=34.2
Q ss_pred eeecCCeEEEEecChhHHHHHHHHHcCCCEEEEECCCC
Q 006864 225 VSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA 262 (628)
Q Consensus 225 ~~l~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~ 262 (628)
....+|+|.|||-|..|-+.|..|...|++|..|+...
T Consensus 39 ~~~~~k~V~IIGaGPAGL~AA~~la~~G~~Vtl~E~~~ 76 (179)
T d1ps9a3 39 PAVQKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHS 76 (179)
T ss_dssp SCSSCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSS
T ss_pred CCCCCcEEEEECccHHHHHHHHHHHhhccceEEEeccC
Confidence 34568999999999999999999999999999998753
|
| >d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus, TTHB020 [TaxId: 274]
Probab=88.18 E-value=0.16 Score=48.07 Aligned_cols=83 Identities=19% Similarity=0.258 Sum_probs=51.4
Q ss_pred eecCCeEEEEecCh-hHHHHHHHHHcCCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEcCCCCcc--cccccc
Q 006864 226 SLVGKTLAVMGFGK-VGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPT--TSKIFN 302 (628)
Q Consensus 226 ~l~GktiGIIGlG~-IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~sl~ell~~aDvV~l~~Plt~~--t~~li~ 302 (628)
.|.||++.|.|-+. ||+++|+.|...|++|+..+++.. ...+. .++ + ..+++.+.+-++.+ .+.++.
T Consensus 2 ~l~gK~alItGas~GIG~aia~~l~~~G~~V~~~~r~~~--~~~~~------~~~-~-~~~~~~~~~Dls~~~~i~~~~~ 71 (241)
T d2a4ka1 2 RLSGKTILVTGAASGIGRAALDLFAREGASLVAVDREER--LLAEA------VAA-L-EAEAIAVVADVSDPKAVEAVFA 71 (241)
T ss_dssp TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHH--HHHHH------HHT-C-CSSEEEEECCTTSHHHHHHHHH
T ss_pred cCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH--HHHHH------HHH-c-CCceEEEEecCCCHHHHHHHHH
Confidence 37899999998776 999999999999999999987642 11110 111 1 24566665555432 222232
Q ss_pred HHHHhcCCCCcEEEEcC
Q 006864 303 DETFAKMKKGVRIVNVA 319 (628)
Q Consensus 303 ~~~l~~mk~gailIN~a 319 (628)
...+.+++=-++||++
T Consensus 72 -~i~~~~g~iDiLinnA 87 (241)
T d2a4ka1 72 -EALEEFGRLHGVAHFA 87 (241)
T ss_dssp -HHHHHHSCCCEEEEGG
T ss_pred -HHHHHhCCccEecccc
Confidence 2333345555777765
|
| >d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase species: Guinea pig (Cavia porcellus) [TaxId: 10141]
Probab=87.98 E-value=0.22 Score=44.59 Aligned_cols=87 Identities=22% Similarity=0.212 Sum_probs=59.5
Q ss_pred cCCeEEEEec-ChhHHHHHHHHHcCCCEEEEECCCC-ChhHHHHcCCccc------C-HHHHh-----ccCCEEEEcCCC
Q 006864 228 VGKTLAVMGF-GKVGSEVARRAKGLGMNVIAHDPYA-PADKARAVGVELV------S-FDQAL-----ATADFISLHMPL 293 (628)
Q Consensus 228 ~GktiGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~g~~~~------s-l~ell-----~~aDvV~l~~Pl 293 (628)
.|.++.|.|. |.+|+..++.++..|++|++.++.. ..+..++.|+..+ + .++++ ...|+|+-++.
T Consensus 29 ~G~~VlV~ga~ggvG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~~~~~~~~~Gvd~v~D~vG- 107 (182)
T d1v3va2 29 GGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQIGFDAAFNYKTVNSLEEALKKASPDGYDCYFDNVG- 107 (182)
T ss_dssp SSCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSEEEETTSCSCHHHHHHHHCTTCEEEEEESSC-
T ss_pred CCCEEEEEeCCCchhHHHHHHHHccCCEEEEeCCCHHHHHHHHhhhhhhhcccccccHHHHHHHHhhcCCCceeEEecC-
Confidence 4788999888 7799999999999999999987654 3445666675321 1 22222 23777777664
Q ss_pred CccccccccHHHHhcCCCCcEEEEcCC
Q 006864 294 NPTTSKIFNDETFAKMKKGVRIVNVAR 320 (628)
Q Consensus 294 t~~t~~li~~~~l~~mk~gailIN~aR 320 (628)
.++ -.+.++.|+++..++.++.
T Consensus 108 -~~~----~~~~~~~l~~~G~~v~~G~ 129 (182)
T d1v3va2 108 -GEF----LNTVLSQMKDFGKIAICGA 129 (182)
T ss_dssp -HHH----HHHHGGGEEEEEEEEECCC
T ss_pred -chh----hhhhhhhccCCCeEEeecc
Confidence 222 2456777888888888764
|
| >d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Escherichia coli [TaxId: 562]
Probab=87.93 E-value=0.067 Score=48.02 Aligned_cols=62 Identities=19% Similarity=0.230 Sum_probs=39.9
Q ss_pred CeEEEEec-ChhHHHHHHHHHc-CCCEEEE-ECCCCChhHH---------HHcCCcc-cCHHHHhccCCEEEEcC
Q 006864 230 KTLAVMGF-GKVGSEVARRAKG-LGMNVIA-HDPYAPADKA---------RAVGVEL-VSFDQALATADFISLHM 291 (628)
Q Consensus 230 ktiGIIGl-G~IG~~vA~~l~~-~G~~V~~-~d~~~~~~~a---------~~~g~~~-~sl~ell~~aDvV~l~~ 291 (628)
-+|+|+|+ |+||+.+++.+.. -++++.+ +|+....... ...++.. .++++++..+|+|+=-.
T Consensus 5 ikI~i~Ga~GrMG~~i~~~i~~~~~~~lv~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~DViIDFs 79 (162)
T d1diha1 5 IRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSDAGELAGAGKTGVTVQSSLDAVKDDFDVFIDFT 79 (162)
T ss_dssp EEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTCTTCSCCTTCSSSSSCCSCCEESCSTTTTTSCSEEEECS
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecccchhccchhhhhhccccCCceeeccHHHHhcccceEEEec
Confidence 37999995 9999999998875 4788754 5654321110 1112222 25777888889886544
|
| >d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=87.78 E-value=0.23 Score=41.70 Aligned_cols=34 Identities=24% Similarity=0.218 Sum_probs=30.9
Q ss_pred CCeEEEEecChhHHHHHHHHHcCCCEEEEECCCC
Q 006864 229 GKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA 262 (628)
Q Consensus 229 GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~ 262 (628)
++++.|||-|.+|-++|..|..+|.+|..+++..
T Consensus 32 ~~~vvIiGgG~iG~E~A~~l~~~g~~Vtlv~~~~ 65 (122)
T d1xhca2 32 SGEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGA 65 (122)
T ss_dssp HSEEEEEECSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred CCcEEEECCcHHHHHHHHHhhcccceEEEEeccc
Confidence 4789999999999999999999999999998653
|
| >d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Maltose-6'-phosphate glucosidase GlvA species: Bacillus subtilis [TaxId: 1423]
Probab=87.75 E-value=0.51 Score=42.14 Aligned_cols=104 Identities=14% Similarity=0.095 Sum_probs=62.5
Q ss_pred CCeEEEEecChhHHHH--HHHHHcC-C---CEEEEECCCCChhH---------HHHcCCc-----ccCHHHHhccCCEEE
Q 006864 229 GKTLAVMGFGKVGSEV--ARRAKGL-G---MNVIAHDPYAPADK---------ARAVGVE-----LVSFDQALATADFIS 288 (628)
Q Consensus 229 GktiGIIGlG~IG~~v--A~~l~~~-G---~~V~~~d~~~~~~~---------a~~~g~~-----~~sl~ell~~aDvV~ 288 (628)
..+|.|||.|.+|... ...++.. . -++..+|....... ....+.. ..+.+|.++.||+|+
T Consensus 3 ~~KI~iIGaGsv~~~~~~~~ll~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~eal~~AD~Vv 82 (167)
T d1u8xx1 3 SFSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIREKAPDIEFAATTDPEEAFTDVDFVM 82 (167)
T ss_dssp CEEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHHHHHHHHCTTSEEEEESCHHHHHSSCSEEE
T ss_pred CceEEEECCChhhhHHHHHHHHhhhhhcCCCEEEEEcCChhHHHHHHHHHHHHHHHhCCCcceEecCChhhccCCCCEEE
Confidence 3479999999988653 3333322 2 38999997642211 1111221 237899999999999
Q ss_pred EcCCCCcccccccc----------------------------------HHHHhcCCCCcEEEEcCCCchhcHHHHHHHH
Q 006864 289 LHMPLNPTTSKIFN----------------------------------DETFAKMKKGVRIVNVARGGVIDEEALVRAL 333 (628)
Q Consensus 289 l~~Plt~~t~~li~----------------------------------~~~l~~mk~gailIN~aRg~~vde~aL~~aL 333 (628)
++.-... ..++-. .+.+.+..|+++++|++-.-=+-..++.+..
T Consensus 83 itag~~~-~~g~~rd~~i~~~~Gi~~~~t~g~gg~~~~~r~i~ii~~i~~~i~~~~P~A~li~~TNPvdv~t~~~~k~~ 160 (167)
T d1u8xx1 83 AHIRVGK-YAMRALDEQIPLKYGVVGQETCGPGGIAYGMRSIGGVLEILDYMEKYSPDAWMLNYSNPAAIVAEATRRLR 160 (167)
T ss_dssp ECCCTTH-HHHHHHHHHHHHTTTCCCCSSSHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCSCHHHHHHHHHHHS
T ss_pred ECCCcCC-CCceeHHHhhchhcCceeeccccCcchheehhhHHHHHHHHHHHHhhCCCeEEEEeCCHHHHHHHHHHHHC
Confidence 9874311 111100 1233455789999999876555566666653
|
| >d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Probab=87.70 E-value=0.21 Score=42.42 Aligned_cols=33 Identities=21% Similarity=0.257 Sum_probs=30.5
Q ss_pred CCeEEEEecChhHHHHHHHHHcCCCEEEEECCC
Q 006864 229 GKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPY 261 (628)
Q Consensus 229 GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~ 261 (628)
.+++.|||.|.||-++|..++.+|.+|..+.+.
T Consensus 26 p~~vvIiGgG~IG~E~A~~~~~~G~~Vtive~~ 58 (125)
T d1ojta2 26 PGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMM 58 (125)
T ss_dssp CSEEEEESCSHHHHHHHHHHHHHTCEEEEECSS
T ss_pred CCeEEEECCCHHHHHHHHHhhcCCCEEEEEEee
Confidence 479999999999999999999999999998754
|
| >d1pjca2 c.23.12.2 (A:1-135,A:304-361) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Formate/glycerate dehydrogenase catalytic domain-like family: L-alanine dehydrogenase-like domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=87.54 E-value=0.55 Score=43.03 Aligned_cols=95 Identities=13% Similarity=0.087 Sum_probs=67.9
Q ss_pred HHHHHHHcCCCEEEEECC-----CCChhHHHHcCCccc-CHHHHhccCCEEEEcCCCCccccccccHHHHhcCCCCcEEE
Q 006864 243 EVARRAKGLGMNVIAHDP-----YAPADKARAVGVELV-SFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIV 316 (628)
Q Consensus 243 ~vA~~l~~~G~~V~~~d~-----~~~~~~a~~~g~~~~-sl~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailI 316 (628)
..+++|...|++|++=.- ..+.+...+.|++.+ +.++++ +||+|+.--|.+ .+++++||+|.++|
T Consensus 21 ~~vkkl~~~G~~V~VE~gaG~~a~fsD~~Y~~aGa~i~~~~~~~~-~~diilkv~~p~--------~~e~~~lk~~~~li 91 (193)
T d1pjca2 21 SSVRTLVEAGHTVFIETQAGIGAGFADQDYVQAGAQVVPSAKDAW-SREMVVKVKEPL--------PAEYDLMQKDQLLF 91 (193)
T ss_dssp HHHHHHHTTTCEEEEETTTTGGGTCCHHHHHHHTCEEESSHHHHH-TSSEEECSSCCC--------GGGGGGCCTTCEEE
T ss_pred HHHHHHHHCCCEEEEEcCcccccCCCHHHHHhhcceeeecccccc-ccceEEEeccCC--------HHHHHhhhcCceEE
Confidence 467888899999998532 224555667788877 455665 689986554433 34678899999999
Q ss_pred EcCCCchhcHHHHHHHHhCCCeeEEEeeccCC
Q 006864 317 NVARGGVIDEEALVRALDSGVVAQAALDVFTE 348 (628)
Q Consensus 317 N~aRg~~vde~aL~~aL~~g~i~ga~lDV~~~ 348 (628)
-.-- ......+.++|.+.++...++|....
T Consensus 92 ~~l~--p~~~~ell~~l~~~~it~~s~E~ipr 121 (193)
T d1pjca2 92 TYLH--LAAARELTEQLMRVGLTAIAYETVEL 121 (193)
T ss_dssp ECCC--GGGCHHHHHHHHHHTCEEEEGGGCCC
T ss_pred EecC--cccchHHHHHHHHcCCEEEEeeeccc
Confidence 8754 34456789999999998888876543
|
| >d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative oxidoreductase Rv2002 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=87.53 E-value=0.23 Score=47.11 Aligned_cols=37 Identities=27% Similarity=0.279 Sum_probs=32.7
Q ss_pred eecCCeEEEEec-ChhHHHHHHHHHcCCCEEEEECCCC
Q 006864 226 SLVGKTLAVMGF-GKVGSEVARRAKGLGMNVIAHDPYA 262 (628)
Q Consensus 226 ~l~GktiGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~ 262 (628)
.|.||++.|-|- +.||+++|++|...|++|++.|+..
T Consensus 3 ~L~gK~alITGas~GIG~aia~~la~~G~~V~~~~r~~ 40 (244)
T d1nffa_ 3 RLTGKVALVSGGARGMGASHVRAMVAEGAKVVFGDILD 40 (244)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred ccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence 478999999987 5699999999999999999998763
|
| >d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Malate oxidoreductase (malic enzyme) species: Thermotoga maritima [TaxId: 2336]
Probab=87.48 E-value=1.1 Score=41.75 Aligned_cols=124 Identities=22% Similarity=0.195 Sum_probs=86.5
Q ss_pred HHHHHHHHHHHHHHchhHHHHHHHcCcccccccceeeecCCeEEEEecChhHHHHHHHHHcCCC-EEEEECCCC--Chh-
Q 006864 190 AAEHGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGM-NVIAHDPYA--PAD- 265 (628)
Q Consensus 190 vAE~~l~l~L~~~R~i~~~~~~~~~g~W~~~~~~g~~l~GktiGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~--~~~- 265 (628)
+|--+++-+|+.+| ..|..|...++.|+|.|.-|-.+|+.+...+. +++.+|+.- ...
T Consensus 5 TaaV~LAgll~a~~------------------~~g~~l~d~riv~~GAGsAg~gia~~l~~~~~~~i~~~D~~GLi~~~r 66 (222)
T d1vl6a1 5 TAVVVSAAFLNALK------------------LTEKKIEEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRKGILNEND 66 (222)
T ss_dssp HHHHHHHHHHHHHH------------------HHTCCTTTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTEECCTTS
T ss_pred HHHHHHHHHHHHHH------------------HhCCChhhcEEEEEChHHHHHHHHHHHHHhcccceEeecceeEEEcCc
Confidence 34456666776666 23567899999999999999999999987776 688888651 111
Q ss_pred ---------H--HHHcCC--cccCHHHHhccCCEEEEcCCCCccccccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHH
Q 006864 266 ---------K--ARAVGV--ELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRA 332 (628)
Q Consensus 266 ---------~--a~~~g~--~~~sl~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~~vde~aL~~a 332 (628)
. .+.... ...++.+++..+|++...- +.+.+.++.+.+|.+..+|.=.++..---|.. .+
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~g~~~~~g~~-----~~~~~~~e~m~~~~~rPIIFpLSNPt~~~e~~--~a 139 (222)
T d1vl6a1 67 PETCLNEYHLEIARITNPERLSGDLETALEGADFFIGVS-----RGNILKPEWIKKMSRKPVIFALANPVPEIDPE--LA 139 (222)
T ss_dssp GGGCSSHHHHHHHHTSCTTCCCSCHHHHHTTCSEEEECS-----CSSCSCHHHHTTSCSSCEEEECCSSSCSSCHH--HH
T ss_pred ccccccHHHHHHHhhhcchhhhcchHhhccCcceecccc-----ccccccHHHHhhcCCCCEEEecCCCccchhhh--hh
Confidence 0 111111 1237889999999876643 57888899999999999999988765544433 33
Q ss_pred HhCCCe
Q 006864 333 LDSGVV 338 (628)
Q Consensus 333 L~~g~i 338 (628)
-..|+.
T Consensus 140 ~~~G~a 145 (222)
T d1vl6a1 140 REAGAF 145 (222)
T ss_dssp HHTTCS
T ss_pred eeccce
Confidence 445654
|
| >d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Thermotoga maritima [TaxId: 2336]
Probab=87.33 E-value=0.24 Score=42.50 Aligned_cols=31 Identities=19% Similarity=0.498 Sum_probs=26.3
Q ss_pred CeEEEEec-ChhHHHHHHHHHcCCCEEEE-ECC
Q 006864 230 KTLAVMGF-GKVGSEVARRAKGLGMNVIA-HDP 260 (628)
Q Consensus 230 ktiGIIGl-G~IG~~vA~~l~~~G~~V~~-~d~ 260 (628)
++|||+|+ |+||+.+++.+...|+++.+ +|+
T Consensus 1 mki~i~G~~GrMG~~i~~~~~~~~~~l~~~id~ 33 (128)
T d1vm6a3 1 MKYGIVGYSGRMGQEIQKVFSEKGHELVLKVDV 33 (128)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEEET
T ss_pred CEEEEECCCCHHHHHHHHHHhcCCCeEEEEECC
Confidence 47999996 99999999999999998765 443
|
| >d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Levodione reductase species: Corynebacterium aquaticum [TaxId: 144185]
Probab=87.22 E-value=0.33 Score=46.17 Aligned_cols=88 Identities=14% Similarity=0.133 Sum_probs=54.9
Q ss_pred eecCCeEEEEecC-hhHHHHHHHHHcCCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEcCCCCcc--cccccc
Q 006864 226 SLVGKTLAVMGFG-KVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPT--TSKIFN 302 (628)
Q Consensus 226 ~l~GktiGIIGlG-~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~sl~ell~~aDvV~l~~Plt~~--t~~li~ 302 (628)
.|.||++.|-|-+ .||+++|++|...|++|+..|+... ...+. ...+.+......++.+.+-++++ .+.+++
T Consensus 1 rl~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~--~l~~~---~~~~~~~~~~~~~~~~~~Dvt~~~~v~~~~~ 75 (258)
T d1iy8a_ 1 RFTDRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSE--GLEAS---KAAVLETAPDAEVLTTVADVSDEAQVEAYVT 75 (258)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHH--HHHHH---HHHHHHHCTTCCEEEEECCTTSHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH--HHHHH---HHHHHhhCCCCeEEEEeccCCCHHHHHHHHH
Confidence 3789999999866 5999999999999999999987632 11110 11223333456777777766542 333332
Q ss_pred HHHHhcCCCCcEEEEcC
Q 006864 303 DETFAKMKKGVRIVNVA 319 (628)
Q Consensus 303 ~~~l~~mk~gailIN~a 319 (628)
+..+.+.+=-+|||.+
T Consensus 76 -~~~~~~G~iDiLVnnA 91 (258)
T d1iy8a_ 76 -ATTERFGRIDGFFNNA 91 (258)
T ss_dssp -HHHHHHSCCSEEEECC
T ss_pred -HHHHHhCCCCEEEECC
Confidence 2233334444777765
|
| >d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (s)-1-phenylethanol dehydrogenase species: Azoarcus sp. ebn1 [TaxId: 76114]
Probab=86.72 E-value=0.39 Score=45.32 Aligned_cols=38 Identities=21% Similarity=0.250 Sum_probs=33.3
Q ss_pred eecCCeEEEEecC-hhHHHHHHHHHcCCCEEEEECCCCC
Q 006864 226 SLVGKTLAVMGFG-KVGSEVARRAKGLGMNVIAHDPYAP 263 (628)
Q Consensus 226 ~l~GktiGIIGlG-~IG~~vA~~l~~~G~~V~~~d~~~~ 263 (628)
.|.||++.|.|-+ .||+++|++|...|++|+..|+...
T Consensus 2 rL~gKvalVTGas~GIG~aia~~la~~Ga~V~~~~~~~~ 40 (247)
T d2ew8a1 2 RLKDKLAVITGGANGIGRAIAERFAVEGADIAIADLVPA 40 (247)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCC
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCch
Confidence 4789999999875 5999999999999999999987653
|
| >d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Rhodotorula gracilis [TaxId: 5286]
Probab=86.72 E-value=0.25 Score=45.18 Aligned_cols=33 Identities=24% Similarity=0.209 Sum_probs=30.8
Q ss_pred CCeEEEEecChhHHHHHHHHHcCCCEEEEECCC
Q 006864 229 GKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPY 261 (628)
Q Consensus 229 GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~ 261 (628)
-|+|.|||-|-.|.+.|..|+..|++|.++|+.
T Consensus 6 ~~kVvVIGaGiaGl~~A~~L~~~G~~V~vier~ 38 (268)
T d1c0pa1 6 QKRVVVLGSGVIGLSSALILARKGYSVHILARD 38 (268)
T ss_dssp SCEEEEECCSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred CCcEEEECccHHHHHHHHHHHHCCCCEEEEeCC
Confidence 368999999999999999999999999999875
|
| >d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=86.64 E-value=0.27 Score=40.79 Aligned_cols=33 Identities=27% Similarity=0.365 Sum_probs=30.4
Q ss_pred CCeEEEEecChhHHHHHHHHHcCCCEEEEECCC
Q 006864 229 GKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPY 261 (628)
Q Consensus 229 GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~ 261 (628)
.+++.|||-|.+|-++|..|+.+|.+|..+++.
T Consensus 21 p~~vvIiGgG~~G~E~A~~l~~~g~~Vtlve~~ 53 (115)
T d1lvla2 21 PQHLVVVGGGYIGLELGIAYRKLGAQVSVVEAR 53 (115)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHHTCEEEEECSS
T ss_pred CCeEEEECCCHHHHHHHHHHhhcccceEEEeee
Confidence 479999999999999999999999999998754
|
| >d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=86.60 E-value=0.25 Score=43.39 Aligned_cols=62 Identities=13% Similarity=0.050 Sum_probs=43.2
Q ss_pred eEEEEe-cChhHHHHHHHHHcCC-------CEEEEECCCCChhHHHHc-------CCc-------ccCHHHHhccCCEEE
Q 006864 231 TLAVMG-FGKVGSEVARRAKGLG-------MNVIAHDPYAPADKARAV-------GVE-------LVSFDQALATADFIS 288 (628)
Q Consensus 231 tiGIIG-lG~IG~~vA~~l~~~G-------~~V~~~d~~~~~~~a~~~-------g~~-------~~sl~ell~~aDvV~ 288 (628)
+|.||| .|.+|+.+|-.|...+ ..+..||.......+..+ ... ..+.++.+++||+|+
T Consensus 5 KV~IiGA~G~VG~~la~~l~~~~~~~~~~~~~L~l~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvVV 84 (154)
T d5mdha1 5 RVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPLLKDVIATDKEEIAFKDLDVAI 84 (154)
T ss_dssp EEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTCCTTEEEEEEESCHHHHTTTCSEEE
T ss_pred EEEEECCCCHHHHHHHHHHHHHHhcCCCCccEEEEecCccchhhhhhhhhhhcccccccccccccCcccccccCCceEEE
Confidence 899999 5999999999987433 257778865433322211 111 125789999999999
Q ss_pred EcCC
Q 006864 289 LHMP 292 (628)
Q Consensus 289 l~~P 292 (628)
++.-
T Consensus 85 itag 88 (154)
T d5mdha1 85 LVGS 88 (154)
T ss_dssp ECCS
T ss_pred Eecc
Confidence 9774
|
| >d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Escherichia coli [TaxId: 562]
Probab=86.52 E-value=0.36 Score=47.61 Aligned_cols=33 Identities=27% Similarity=0.216 Sum_probs=27.9
Q ss_pred CeEEEEe-cChhHHHHHHHHHcCCCEEEEECCCC
Q 006864 230 KTLAVMG-FGKVGSEVARRAKGLGMNVIAHDPYA 262 (628)
Q Consensus 230 ktiGIIG-lG~IG~~vA~~l~~~G~~V~~~d~~~ 262 (628)
|.+.|.| .|-||+.+++.|...|++|++.|+..
T Consensus 2 K~vLITGatGfiGs~lv~~Ll~~g~~V~~~~r~~ 35 (357)
T d1db3a_ 2 KVALITGVTGQDGSYLAEFLLEKGYEVHGIKRRA 35 (357)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEECC--
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCcCEEEEEECCC
Confidence 5566777 99999999999999999999999753
|
| >d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus [TaxId: 274]
Probab=86.47 E-value=0.37 Score=45.39 Aligned_cols=37 Identities=19% Similarity=0.221 Sum_probs=32.7
Q ss_pred eecCCeEEEEecC-hhHHHHHHHHHcCCCEEEEECCCC
Q 006864 226 SLVGKTLAVMGFG-KVGSEVARRAKGLGMNVIAHDPYA 262 (628)
Q Consensus 226 ~l~GktiGIIGlG-~IG~~vA~~l~~~G~~V~~~d~~~ 262 (628)
.|.||++.|-|-+ .||+++|++|...|++|+..|+..
T Consensus 2 ~L~gK~~lITGas~GIG~aia~~l~~~G~~V~~~~r~~ 39 (242)
T d1ulsa_ 2 RLKDKAVLITGAAHGIGRATLELFAKEGARLVACDIEE 39 (242)
T ss_dssp TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence 4789999999864 699999999999999999998763
|
| >d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=86.44 E-value=0.38 Score=41.02 Aligned_cols=34 Identities=35% Similarity=0.385 Sum_probs=31.4
Q ss_pred cCCeEEEEecChhHHHHHHHHHcCCCEEEEECCC
Q 006864 228 VGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPY 261 (628)
Q Consensus 228 ~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~ 261 (628)
.++++.|||-|.+|-++|..|+..|.+|..+++.
T Consensus 34 ~~k~v~VIGgG~iG~E~A~~l~~~g~~Vtvie~~ 67 (133)
T d1q1ra2 34 ADNRLVVIGGGYIGLEVAATAIKANMHVTLLDTA 67 (133)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred cCCEEEEECCchHHHHHHHHHHhhCcceeeeeec
Confidence 3689999999999999999999999999999864
|
| >d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermotoga maritima [TaxId: 2336]
Probab=86.27 E-value=0.77 Score=42.68 Aligned_cols=35 Identities=20% Similarity=0.182 Sum_probs=32.0
Q ss_pred ecCCeEEEEec-ChhHHHHHHHHHcCCCEEEEECCC
Q 006864 227 LVGKTLAVMGF-GKVGSEVARRAKGLGMNVIAHDPY 261 (628)
Q Consensus 227 l~GktiGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~ 261 (628)
|+||++.|.|- +.||+++|++|...|++|++.|+.
T Consensus 2 LkgK~~lVTGas~GIG~aia~~l~~~Ga~V~~~~r~ 37 (234)
T d1o5ia_ 2 IRDKGVLVLAASRGIGRAVADVLSQEGAEVTICARN 37 (234)
T ss_dssp CTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECC
Confidence 78999999986 569999999999999999999875
|
| >d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: L-aminoacid oxidase species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]
Probab=86.25 E-value=0.24 Score=46.65 Aligned_cols=34 Identities=24% Similarity=0.301 Sum_probs=31.4
Q ss_pred cCCeEEEEecChhHHHHHHHHHcCCCEEEEECCC
Q 006864 228 VGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPY 261 (628)
Q Consensus 228 ~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~ 261 (628)
..|+|.|||-|..|...|..|+..|++|.+++..
T Consensus 29 ~pkkV~IIGaG~aGLsaA~~L~~~G~~V~vlE~~ 62 (370)
T d2iida1 29 NPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEAS 62 (370)
T ss_dssp SCCEEEEECCBHHHHHHHHHHHHHTCEEEEECSS
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCCEEEEeCC
Confidence 4579999999999999999999999999999865
|
| >d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Usg-1 protein homolog PA3116 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=86.13 E-value=0.22 Score=43.44 Aligned_cols=86 Identities=9% Similarity=0.100 Sum_probs=49.4
Q ss_pred CeEEEEec-ChhHHHHHHHHHcCC---CEEEEECCCCChhHHHHcC---CcccC-HHHHhccCCEEEEcCCCCccccccc
Q 006864 230 KTLAVMGF-GKVGSEVARRAKGLG---MNVIAHDPYAPADKARAVG---VELVS-FDQALATADFISLHMPLNPTTSKIF 301 (628)
Q Consensus 230 ktiGIIGl-G~IG~~vA~~l~~~G---~~V~~~d~~~~~~~a~~~g---~~~~s-l~ell~~aDvV~l~~Plt~~t~~li 301 (628)
.+|||||. |-+|+++.+.|...+ .++..+.......+..... ....+ -.+.+.++|++++++|-.. ...+
T Consensus 3 mnVaIvGATGyvG~eli~lL~~~~hP~~~l~~~~s~~~~Gk~i~~~~~~~~~~~~~~~~~~~~d~vf~a~p~~~-s~~~- 80 (144)
T d2hjsa1 3 LNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESAGQRMGFAESSLRVGDVDSFDFSSVGLAFFAAAAEV-SRAH- 80 (144)
T ss_dssp CCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTTTTCEEEETTEEEECEEGGGCCGGGCSEEEECSCHHH-HHHH-
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCCceEEEEEeecccCCcceeeccccchhccchhhhhccceEEEecCCcch-hhhh-
Confidence 57999986 999999999996432 4555442221111100011 11111 2345688999999998322 2211
Q ss_pred cHHHHhcCCCCcEEEEcCC
Q 006864 302 NDETFAKMKKGVRIVNVAR 320 (628)
Q Consensus 302 ~~~~l~~mk~gailIN~aR 320 (628)
.-...++|+++||.+.
T Consensus 81 ---~~~~~~~g~~VID~Ss 96 (144)
T d2hjsa1 81 ---AERARAAGCSVIDLSG 96 (144)
T ss_dssp ---HHHHHHTTCEEEETTC
T ss_pred ---ccccccCCceEEeech
Confidence 1122467899999764
|
| >d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR) species: Human (Homo sapiens), [TaxId: 9606]
Probab=86.10 E-value=0.27 Score=47.27 Aligned_cols=39 Identities=18% Similarity=0.195 Sum_probs=35.2
Q ss_pred eeeecCCeEEEEe-cChhHHHHHHHHHcCCCEEEEECCCC
Q 006864 224 GVSLVGKTLAVMG-FGKVGSEVARRAKGLGMNVIAHDPYA 262 (628)
Q Consensus 224 g~~l~GktiGIIG-lG~IG~~vA~~l~~~G~~V~~~d~~~ 262 (628)
..+|+||++.|-| .|.||+++|+.|...|++|++.|+..
T Consensus 20 ~~~l~gK~alITGas~GIG~aiA~~la~~Ga~Vii~~r~~ 59 (294)
T d1w6ua_ 20 PNSFQGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKM 59 (294)
T ss_dssp TTTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CCCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCH
Confidence 3589999999997 78999999999999999999998764
|
| >d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Rhizome secoisolariciresinol dehydrogenase species: Mayapple (Podophyllum peltatum) [TaxId: 35933]
Probab=85.96 E-value=0.55 Score=44.63 Aligned_cols=36 Identities=25% Similarity=0.300 Sum_probs=32.3
Q ss_pred eecCCeEEEEec-ChhHHHHHHHHHcCCCEEEEECCC
Q 006864 226 SLVGKTLAVMGF-GKVGSEVARRAKGLGMNVIAHDPY 261 (628)
Q Consensus 226 ~l~GktiGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~ 261 (628)
.|.||++.|.|- +.||+++|++|...|++|+..|+.
T Consensus 3 rL~gKvalITGas~GIG~aia~~la~~Ga~V~i~~r~ 39 (268)
T d2bgka1 3 RLQDKVAIITGGAGGIGETTAKLFVRYGAKVVIADIA 39 (268)
T ss_dssp TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECC
Confidence 488999999985 469999999999999999999875
|
| >d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 11-beta-hydroxysteroid dehydrogenase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.94 E-value=0.26 Score=47.04 Aligned_cols=39 Identities=28% Similarity=0.387 Sum_probs=34.3
Q ss_pred eeeecCCeEEEEecCh-hHHHHHHHHHcCCCEEEEECCCC
Q 006864 224 GVSLVGKTLAVMGFGK-VGSEVARRAKGLGMNVIAHDPYA 262 (628)
Q Consensus 224 g~~l~GktiGIIGlG~-IG~~vA~~l~~~G~~V~~~d~~~ 262 (628)
...|+||++.|.|.+. ||+++|+.|...|++|+..++..
T Consensus 9 ~~~L~GK~alITGassGIG~aiA~~la~~G~~Vil~~r~~ 48 (269)
T d1xu9a_ 9 PEMLQGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSK 48 (269)
T ss_dssp GGGGTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred ccccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence 3349999999998765 99999999999999999999864
|
| >d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Molybdenum cofactor biosynthesis protein MoeB domain: Molybdenum cofactor biosynthesis protein MoeB species: Escherichia coli [TaxId: 562]
Probab=85.88 E-value=0.2 Score=47.16 Aligned_cols=37 Identities=19% Similarity=0.349 Sum_probs=33.2
Q ss_pred eecCCeEEEEecChhHHHHHHHHHcCCC-EEEEECCCC
Q 006864 226 SLVGKTLAVMGFGKVGSEVARRAKGLGM-NVIAHDPYA 262 (628)
Q Consensus 226 ~l~GktiGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~ 262 (628)
.|++++|.|||+|.+|..+|..|...|. ++..+|+..
T Consensus 27 kL~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ 64 (247)
T d1jw9b_ 27 ALKDSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDT 64 (247)
T ss_dssp HHHHCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred HHhCCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCcc
Confidence 4899999999999999999999999997 788888653
|
| >d1dssg1 c.2.1.3 (G:1-148,G:313-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {South China Sea lobster (Palinurus versicolor) [TaxId: 150436]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: South China Sea lobster (Palinurus versicolor) [TaxId: 150436]
Probab=85.83 E-value=0.31 Score=43.85 Aligned_cols=100 Identities=23% Similarity=0.367 Sum_probs=55.9
Q ss_pred eEEEEecChhHHHHHHHHHcCCCEEEEE-CCCCChhHH-HHcCCccc--CH-HHHhccCCEEEEcCCCCcccccccc---
Q 006864 231 TLAVMGFGKVGSEVARRAKGLGMNVIAH-DPYAPADKA-RAVGVELV--SF-DQALATADFISLHMPLNPTTSKIFN--- 302 (628)
Q Consensus 231 tiGIIGlG~IG~~vA~~l~~~G~~V~~~-d~~~~~~~a-~~~g~~~~--sl-~ell~~aDvV~l~~Plt~~t~~li~--- 302 (628)
+|||=|||+||+.+.|.+...+.+|.+. |+..+.+.. .-+.+..+ .+ .++-..-|.+++ +.....+.+
T Consensus 2 kIgINGfGRIGR~~~R~~~~~~~~ivaINd~~~~~~~~~yLlkyDS~hG~~~~~i~~~~~~l~i----ng~~I~~~~~~~ 77 (169)
T d1dssg1 2 KIGINGFGRIGRLVLRAALEMGAQVVAVNDPFIALEYMVYMFKYDSTHGMFKGEVKAEDGALVV----DGKKITVFNEMK 77 (169)
T ss_dssp CEEEECCSHHHHHHHHHHHHHTCCEEEEECTTSCHHHHHHHHHCCTTTCCCSSCEEEETTEEEE----TTEEEEEECCSS
T ss_pred eEEEECCcHHHHHHHHHHHhCCCcEEEECCCCcCHHHHHHHHhcccccCCcCCeEEEeCCEEEE----CCEEEEEEecCC
Confidence 7999999999999999998778888776 565554322 21211110 11 111123355554 222222322
Q ss_pred HHHHh--cCCCCcEEEEcCCCchhcHHHHHHHHhCC
Q 006864 303 DETFA--KMKKGVRIVNVARGGVIDEEALVRALDSG 336 (628)
Q Consensus 303 ~~~l~--~mk~gailIN~aRg~~vde~aL~~aL~~g 336 (628)
.+.+. .+.-+ ++|.|. |.--+.+.+..-|+.|
T Consensus 78 p~~i~W~~~gvD-~ViEcT-G~f~~~~~~~~hl~~g 111 (169)
T d1dssg1 78 PENIPWSKAGAE-YIVEST-GVFTTIEKASAHFKGG 111 (169)
T ss_dssp GGGCCHHHHTCC-EEEECS-SSCCSHHHHGGGGTTT
T ss_pred hHHCCccccCCC-EEEecC-ceEcCHHHHHHHHhcC
Confidence 22222 22333 777774 7767777777777765
|
| >d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Escherichia coli [TaxId: 562]
Probab=85.72 E-value=0.33 Score=45.48 Aligned_cols=36 Identities=19% Similarity=0.263 Sum_probs=32.1
Q ss_pred ecCCeEEEEecCh---hHHHHHHHHHcCCCEEEEECCCC
Q 006864 227 LVGKTLAVMGFGK---VGSEVARRAKGLGMNVIAHDPYA 262 (628)
Q Consensus 227 l~GktiGIIGlG~---IG~~vA~~l~~~G~~V~~~d~~~ 262 (628)
|.||++.|.|.+. ||+++|+.|...|++|+..++..
T Consensus 3 L~gK~~lITGass~~GIG~aiA~~l~~~G~~V~i~~~~~ 41 (258)
T d1qsga_ 3 LSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQND 41 (258)
T ss_dssp TTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESST
T ss_pred CCCCEEEEECCCCchhHHHHHHHHHHHcCCEEEEEeCCH
Confidence 7899999998764 99999999999999999887763
|
| >d1duvg2 c.78.1.1 (G:151-333) Ornithine transcarbamoylase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Ornithine transcarbamoylase species: Escherichia coli [TaxId: 562]
Probab=85.63 E-value=1.7 Score=38.71 Aligned_cols=94 Identities=17% Similarity=0.158 Sum_probs=62.4
Q ss_pred eecCCeEEEEecC--hhHHHHHHHHHcCCCEEEEECCCC---Chh-------HHHHcCCc---ccCHHHHhccCCEEEEc
Q 006864 226 SLVGKTLAVMGFG--KVGSEVARRAKGLGMNVIAHDPYA---PAD-------KARAVGVE---LVSFDQALATADFISLH 290 (628)
Q Consensus 226 ~l~GktiGIIGlG--~IG~~vA~~l~~~G~~V~~~d~~~---~~~-------~a~~~g~~---~~sl~ell~~aDvV~l~ 290 (628)
.+.|.+|+++|=| ++..+++..+..|||++...-|.. +.. .....|.. ..++++.++.+|+|..-
T Consensus 2 ~~~~l~i~~vGD~~nnv~~Sli~~~~~~g~~l~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvyt~ 81 (183)
T d1duvg2 2 AFNEMTLVYAGDARNNMGNSMLEAAALTGLDLRLVAPQACWPEAALVTECRALAQQNGGNITLTEDVAKGVEGADFIYTD 81 (183)
T ss_dssp CGGGCEEEEESCTTSHHHHHHHHHHHHHCCEEEEECCGGGCCCHHHHHHHHHHHHHTTCEEEEESCHHHHHTTCSEEEEC
T ss_pred CcCCCEEEEEcCCccHHHHHHHHHHHHcCCEEEEEechHhhhhHHHHHHHHHHHHhcCCceEEEechhhccccCCEEEEE
Confidence 4678999999965 699999999999999999988742 221 12233332 23799999999999774
Q ss_pred CCCCcc--------------ccccccHHHHhcCCCCcEEEEcC
Q 006864 291 MPLNPT--------------TSKIFNDETFAKMKKGVRIVNVA 319 (628)
Q Consensus 291 ~Plt~~--------------t~~li~~~~l~~mk~gailIN~a 319 (628)
.=.... ....++......++++++|.-|.
T Consensus 82 ~w~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~MH~L 124 (183)
T d1duvg2 82 VWVSMGEAKEKWAERIALLREYQVNSKMMQLTGNPEVKFLHCL 124 (183)
T ss_dssp CSSCTTSCTTHHHHHHHHHGGGCBCHHHHHTTCCTTCEEEECS
T ss_pred ehhhhhhhhhhhhhhhhhhcccccccHHHHhcccCCeEEEccC
Confidence 421110 01222333444567788888775
|
| >d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Cod (Gadus callarias) [TaxId: 8053]
Probab=85.46 E-value=3.1 Score=36.08 Aligned_cols=45 Identities=33% Similarity=0.474 Sum_probs=36.8
Q ss_pred cCCeEEEEecChhHHHHHHHHHcCCC-EEEEECCCC-ChhHHHHcCC
Q 006864 228 VGKTLAVMGFGKVGSEVARRAKGLGM-NVIAHDPYA-PADKARAVGV 272 (628)
Q Consensus 228 ~GktiGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~-~~~~a~~~g~ 272 (628)
.|.++.|+|.|.+|...+..++.+|. +|++.|+.. ..+.++++|+
T Consensus 28 ~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~~~GA 74 (175)
T d1cdoa2 28 PGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGA 74 (175)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTC
T ss_pred CCCEEEEEecCCccchHHHHHHHHhhchheeecchHHHHHHHHHcCC
Confidence 57899999999999999999998876 789999876 3455666664
|
| >d1mb4a1 c.2.1.3 (A:1-132,A:355-369) Aspartate beta-semialdehyde dehydrogenase {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Vibrio cholerae [TaxId: 666]
Probab=85.40 E-value=0.63 Score=40.75 Aligned_cols=88 Identities=15% Similarity=0.070 Sum_probs=47.9
Q ss_pred CeEEEEe-cChhHHHHHHHHHcC----CCEEEEECCCCChhHHHHcC----Ccc-cCHHHHhccCCEEEEcCCCCccccc
Q 006864 230 KTLAVMG-FGKVGSEVARRAKGL----GMNVIAHDPYAPADKARAVG----VEL-VSFDQALATADFISLHMPLNPTTSK 299 (628)
Q Consensus 230 ktiGIIG-lG~IG~~vA~~l~~~----G~~V~~~d~~~~~~~a~~~g----~~~-~sl~ell~~aDvV~l~~Plt~~t~~ 299 (628)
++||||| .|-.|+++.++|... ..++..+............+ ... ..-.+.+.++|++++|+|-. .+..
T Consensus 1 mKVaIiGATGyvG~eLi~lLl~~~~~p~~~i~~~ss~~~~gk~~~~~~~~~~~~~~~~~~~~~~~DvvF~alp~~-~s~~ 79 (147)
T d1mb4a1 1 MRVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFSTSQIGVPAPNFGKDAGMLHDAFDIESLKQLDAVITCQGGS-YTEK 79 (147)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEESSCCSSBCCCSSSCCCBCEETTCHHHHTTCSEEEECSCHH-HHHH
T ss_pred CEEEEECCccHHHHHHHHHHHhcCCCCceEEEEeccccccccccccCCcceeeecccchhhhccccEEEEecCch-HHHH
Confidence 4799996 699999999987542 25666543221111110111 001 11235578999999999932 2222
Q ss_pred cccHHHHhcCCCCcEEEEcCC
Q 006864 300 IFNDETFAKMKKGVRIVNVAR 320 (628)
Q Consensus 300 li~~~~l~~mk~gailIN~aR 320 (628)
+. .. +..-...+++||.+.
T Consensus 80 ~~-~~-l~~~g~~~~VIDlSs 98 (147)
T d1mb4a1 80 VY-PA-LRQAGWKGYWIDAAS 98 (147)
T ss_dssp HH-HH-HHHTTCCSEEEESSS
T ss_pred Hh-HH-HHHcCCceEEEeCCc
Confidence 21 22 222333457888764
|
| >d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Oil seed rape (Brassica napus) [TaxId: 3708]
Probab=85.28 E-value=0.27 Score=47.08 Aligned_cols=38 Identities=21% Similarity=0.291 Sum_probs=33.8
Q ss_pred eeeecCCeEEEEecC---hhHHHHHHHHHcCCCEEEEECCC
Q 006864 224 GVSLVGKTLAVMGFG---KVGSEVARRAKGLGMNVIAHDPY 261 (628)
Q Consensus 224 g~~l~GktiGIIGlG---~IG~~vA~~l~~~G~~V~~~d~~ 261 (628)
..+|+||++.|-|.+ -||+++|++|...|++|+..++.
T Consensus 3 ~~~L~gK~alVTGass~~GIG~aiA~~la~~Ga~Vvi~~~~ 43 (297)
T d1d7oa_ 3 PIDLRGKRAFIAGIADDNGYGWAVAKSLAAAGAEILVGTWV 43 (297)
T ss_dssp CCCCTTCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEEEH
T ss_pred CcCCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCc
Confidence 457999999999986 59999999999999999988764
|
| >d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhfP species: Bacillus subtilis [TaxId: 1423]
Probab=85.25 E-value=0.36 Score=43.06 Aligned_cols=49 Identities=24% Similarity=0.299 Sum_probs=39.0
Q ss_pred eeecCCeEEEEe-cChhHHHHHHHHHcCCCEEEEECCCC-ChhHHHHcCCc
Q 006864 225 VSLVGKTLAVMG-FGKVGSEVARRAKGLGMNVIAHDPYA-PADKARAVGVE 273 (628)
Q Consensus 225 ~~l~GktiGIIG-lG~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~g~~ 273 (628)
....|.+|.|-| .|.+|....+.++.+|++|++..... ..+..+++|+.
T Consensus 20 ~~~~~~~VLV~gaaGgVG~~avQlAk~~Ga~Viat~~s~~k~~~~~~lGad 70 (167)
T d1tt7a2 20 LSPEKGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREAADYLKQLGAS 70 (167)
T ss_dssp CCGGGCCEEEESTTSHHHHHHHHHHHHHTCCEEEEESSSSTHHHHHHHTCS
T ss_pred CCCCCCEEEEeCCcchHHHHHHHHHHHcCCceEEEecCHHHHHHHHhhccc
Confidence 334567888888 69999999999999999999987654 45667777764
|
| >d1vkna1 c.2.1.3 (A:1-144,A:308-339) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC species: Thermotoga maritima [TaxId: 2336]
Probab=85.11 E-value=1.1 Score=40.35 Aligned_cols=95 Identities=17% Similarity=0.282 Sum_probs=58.8
Q ss_pred CeEEEEe-cChhHHHHHHHHHcCC-CEEEEE--CCCCChhHHH---H-cC---CcccCHHHHhccCCEEEEcCCCCcccc
Q 006864 230 KTLAVMG-FGKVGSEVARRAKGLG-MNVIAH--DPYAPADKAR---A-VG---VELVSFDQALATADFISLHMPLNPTTS 298 (628)
Q Consensus 230 ktiGIIG-lG~IG~~vA~~l~~~G-~~V~~~--d~~~~~~~a~---~-~g---~~~~sl~ell~~aDvV~l~~Plt~~t~ 298 (628)
.+|||+| .|-.|+++.+.|...- .++... +++....... . .+ +...+.+++..++|++++++|-.. ..
T Consensus 2 ikVaIvGATGyvG~eLirlL~~HP~~ei~~l~s~~~aG~~i~~~~p~~~~~~~~~~~~~~~~~~~~dvvf~a~p~~~-s~ 80 (176)
T d1vkna1 2 IRAGIIGATGYTGLELVRLLKNHPEAKITYLSSRTYAGKKLEEIFPSTLENSILSEFDPEKVSKNCDVLFTALPAGA-SY 80 (176)
T ss_dssp EEEEEESTTSHHHHHHHHHHHHCTTEEEEEEECSTTTTSBHHHHCGGGCCCCBCBCCCHHHHHHHCSEEEECCSTTH-HH
T ss_pred eEEEEECCCcHHHHHHHHHHHhCCCceEEEeeccccCCCcccccCchhhccccccccCHhHhccccceEEEccccHH-HH
Confidence 3799997 6999999999998754 566554 2222111110 0 11 233477888889999999999543 22
Q ss_pred ccccHHHHhcCCCCcEEEEcCCCchhcHHHHHH
Q 006864 299 KIFNDETFAKMKKGVRIVNVARGGVIDEEALVR 331 (628)
Q Consensus 299 ~li~~~~l~~mk~gailIN~aRg~~vde~aL~~ 331 (628)
+..... .+..+||.+..==.+....++
T Consensus 81 -----~~~~~~-~~~~VIDlSadfRl~~~~~y~ 107 (176)
T d1vkna1 81 -----DLVREL-KGVKIIDLGADFRFDDPGVYR 107 (176)
T ss_dssp -----HHHTTC-CSCEEEESSSTTTCSSHHHHH
T ss_pred -----HHHHhh-ccceEEecCccccccchhhHH
Confidence 223333 588999998544444443333
|
| >d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Peroxisomal trans 2-enoyl CoA reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.94 E-value=0.65 Score=45.03 Aligned_cols=88 Identities=20% Similarity=0.242 Sum_probs=55.1
Q ss_pred eecCCeEEEEecC-hhHHHHHHHHHcCCCEEEEECCCCChhHHHHcCCcccCHHHHh---ccCCEEEEcCCCCcc--ccc
Q 006864 226 SLVGKTLAVMGFG-KVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQAL---ATADFISLHMPLNPT--TSK 299 (628)
Q Consensus 226 ~l~GktiGIIGlG-~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~sl~ell---~~aDvV~l~~Plt~~--t~~ 299 (628)
.|.||++.|.|-+ .||+++|++|...|++|++.|+......... ..+..-+ ....++.+.+-++++ .+.
T Consensus 9 ~L~gKvalITGas~GIG~aia~~la~~Ga~Vvi~~r~~~~l~~~~-----~el~~~~~~~~~~~~~~~~~Dvs~~~~v~~ 83 (297)
T d1yxma1 9 LLQGQVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKSAA-----DELQANLPPTKQARVIPIQCNIRNEEEVNN 83 (297)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH-----HHHHHTSCTTCCCCEEEEECCTTCHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH-----HHHHhhhccccCceEEEEeccCCCHHHHHH
Confidence 4899999999865 5999999999999999999988642111100 0111111 245777777766543 333
Q ss_pred cccHHHHhcCCCCcEEEEcC
Q 006864 300 IFNDETFAKMKKGVRIVNVA 319 (628)
Q Consensus 300 li~~~~l~~mk~gailIN~a 319 (628)
++. +..+.+.+=-++||++
T Consensus 84 ~~~-~~~~~~G~iDiLVnnA 102 (297)
T d1yxma1 84 LVK-STLDTFGKINFLVNNG 102 (297)
T ss_dssp HHH-HHHHHHSCCCEEEECC
T ss_pred HHH-HHHHHhCCeEEEEeec
Confidence 432 2334444555777765
|
| >d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Drosophila alcohol dehydrogenase species: Fly (Drosophila lebanonensis) [TaxId: 7225]
Probab=84.87 E-value=0.75 Score=43.42 Aligned_cols=87 Identities=11% Similarity=0.112 Sum_probs=54.1
Q ss_pred eecCCeEEEEecC-hhHHHHHHHHHcCCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEcCCCCc---cccccc
Q 006864 226 SLVGKTLAVMGFG-KVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNP---TTSKIF 301 (628)
Q Consensus 226 ~l~GktiGIIGlG-~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~sl~ell~~aDvV~l~~Plt~---~t~~li 301 (628)
+|.||++.|-|-+ .||.++|+.|...|++|+..++......+. ..+........+.+.++-++. +.+.++
T Consensus 2 ~l~gK~vlITGgs~GIG~~~A~~la~~G~~vii~~r~~~~~~~~------~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 75 (254)
T d1sbya1 2 DLTNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENPTAL------AELKAINPKVNITFHTYDVTVPVAESKKLL 75 (254)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSCCHHHH------HHHHHHCTTSEEEEEECCTTSCHHHHHHHH
T ss_pred CCCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEECCcccHHHH------HHHHhhCCCCCEEEEEeecCCCHHHHHHHH
Confidence 5889999999877 599999999999999887765443222111 123344455667777666652 233334
Q ss_pred cHHHHhcCCCCcEEEEcC
Q 006864 302 NDETFAKMKKGVRIVNVA 319 (628)
Q Consensus 302 ~~~~l~~mk~gailIN~a 319 (628)
++ ..+...+==+|||+|
T Consensus 76 ~~-~~~~~g~iDilvnnA 92 (254)
T d1sbya1 76 KK-IFDQLKTVDILINGA 92 (254)
T ss_dssp HH-HHHHHSCCCEEEECC
T ss_pred HH-HHHHcCCCCEEEeCC
Confidence 32 223333323788876
|
| >d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=84.69 E-value=0.21 Score=47.75 Aligned_cols=37 Identities=27% Similarity=0.346 Sum_probs=33.1
Q ss_pred eecCCeEEEEecCh-hHHHHHHHHHcCCCEEEEECCCC
Q 006864 226 SLVGKTLAVMGFGK-VGSEVARRAKGLGMNVIAHDPYA 262 (628)
Q Consensus 226 ~l~GktiGIIGlG~-IG~~vA~~l~~~G~~V~~~d~~~ 262 (628)
.|+||++.|.|-+. ||+++|++|...|++|+..|+..
T Consensus 5 ~LkgK~alVTGas~GIG~aiA~~la~~Ga~V~~~~r~~ 42 (259)
T d1xq1a_ 5 SLKAKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNE 42 (259)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence 68999999998665 99999999999999999998763
|
| >d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=84.56 E-value=0.18 Score=44.51 Aligned_cols=87 Identities=18% Similarity=0.166 Sum_probs=52.0
Q ss_pred CCeEEEEec-ChhHHHHHHHHHcCC---CEEEEECCCCChhHHHHcCC----cccCHHHHhccCCEEEEcCCCCcccccc
Q 006864 229 GKTLAVMGF-GKVGSEVARRAKGLG---MNVIAHDPYAPADKARAVGV----ELVSFDQALATADFISLHMPLNPTTSKI 300 (628)
Q Consensus 229 GktiGIIGl-G~IG~~vA~~l~~~G---~~V~~~d~~~~~~~a~~~g~----~~~sl~ell~~aDvV~l~~Plt~~t~~l 300 (628)
|=+|||||. |-+|+++.+.|.... .++.++.............. .....++...++|++++++|-.. +.
T Consensus 1 g~kVaIvGATGyvG~eLirlL~~H~fp~~~l~~~~s~~s~G~~~~~~~~~~~~~~~~~~~~~~~d~~f~~~~~~~-s~-- 77 (154)
T d2gz1a1 1 GYTVAVVGATGAVGAQMIKMLEESTLPIDKIRYLASARSAGKSLKFKDQDITIEETTETAFEGVDIALFSAGSST-SA-- 77 (154)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHTCCSCEEEEEEEECGGGTTCEEEETTEEEEEEECCTTTTTTCSEEEECSCHHH-HH--
T ss_pred CCEEEEECCCcHHHHHHHHHHHcCCCCceEEEEecccccccccccccCCcccccccchhhhhhhhhhhhccCccc-hh--
Confidence 457999997 999999999997654 34444432211110000000 11134566788999999998322 22
Q ss_pred ccHHHHhcCCCCcEEEEcCC
Q 006864 301 FNDETFAKMKKGVRIVNVAR 320 (628)
Q Consensus 301 i~~~~l~~mk~gailIN~aR 320 (628)
+......++|..+||.+.
T Consensus 78 --~~~~~~~~~~~~VIDlSs 95 (154)
T d2gz1a1 78 --KYAPYAVKAGVVVVDNTS 95 (154)
T ss_dssp --HHHHHHHHTTCEEEECSS
T ss_pred --hHHhhhccccceehhcCh
Confidence 222334578999999873
|
| >d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: R-specific alcohol dehydrogenase species: Lactobacillus brevis [TaxId: 1580]
Probab=84.53 E-value=0.55 Score=44.34 Aligned_cols=36 Identities=22% Similarity=0.248 Sum_probs=32.1
Q ss_pred eecCCeEEEEe-cChhHHHHHHHHHcCCCEEEEECCC
Q 006864 226 SLVGKTLAVMG-FGKVGSEVARRAKGLGMNVIAHDPY 261 (628)
Q Consensus 226 ~l~GktiGIIG-lG~IG~~vA~~l~~~G~~V~~~d~~ 261 (628)
.|.||++.|-| -+.||+++|++|...|++|+..|+.
T Consensus 3 rL~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~ 39 (251)
T d1zk4a1 3 RLDGKVAIITGGTLGIGLAIATKFVEEGAKVMITGRH 39 (251)
T ss_dssp TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence 48899999998 4569999999999999999999875
|
| >d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Phenylcoumaran benzylic ether reductase species: Loblolly pine (Pinus taeda) [TaxId: 3352]
Probab=84.12 E-value=1.1 Score=41.47 Aligned_cols=34 Identities=21% Similarity=0.309 Sum_probs=30.4
Q ss_pred CCeEEEEec-ChhHHHHHHHHHcCCCEEEEECCCC
Q 006864 229 GKTLAVMGF-GKVGSEVARRAKGLGMNVIAHDPYA 262 (628)
Q Consensus 229 GktiGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~ 262 (628)
-|+|.|+|. |.||+.+++.|...|++|++.++..
T Consensus 3 kkKILVtGatG~iG~~l~~~L~~~G~~V~~l~R~~ 37 (307)
T d1qyca_ 3 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVRES 37 (307)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCC
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCeEEEEECCC
Confidence 378999985 9999999999999999999998764
|
| >d2g82a1 c.2.1.3 (A:1-148,A:311-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Thermus aquaticus [TaxId: 271]
Probab=84.09 E-value=0.39 Score=43.07 Aligned_cols=103 Identities=16% Similarity=0.294 Sum_probs=58.9
Q ss_pred CeEEEEecChhHHHHHHHHHcCCCEEEEECCCCChhHH-HHcCCccc--CH-HHHhccCCEEEEcCCCCcccccccc---
Q 006864 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKA-RAVGVELV--SF-DQALATADFISLHMPLNPTTSKIFN--- 302 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a-~~~g~~~~--sl-~ell~~aDvV~l~~Plt~~t~~li~--- 302 (628)
.+|||=|||+||+.+.|.|..-+.+|.+.+.....+.. .-+.+..+ .+ .++-..-|.+++ +.+...+.+
T Consensus 1 ikigINGfGRIGR~~~R~l~~~~i~iv~INd~~~~~~~ayLl~yDS~hG~~~~~v~~~~~~l~i----~g~~I~~~~~~~ 76 (168)
T d2g82a1 1 MKVGINGFGRIGRQVFRILHSRGVEVALINDLTDNKTLAHLLKYDSIYHRFPGEVAYDDQYLYV----DGKAIRATAVKD 76 (168)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSCHHHHHHHHHCCTTTCSCSSCEEECSSEEEE----TTEEEEEECCSS
T ss_pred CEEEEECCcHHHHHHHHHHhcCCCEEEEECCCcchhhhhheeecccccCccccccccccceeEe----cceeEEEEecCC
Confidence 37999999999999999988778888887543333322 11111111 11 112234455555 222223333
Q ss_pred HHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhCC
Q 006864 303 DETFAKMKKGVRIVNVARGGVIDEEALVRALDSG 336 (628)
Q Consensus 303 ~~~l~~mk~gailIN~aRg~~vde~aL~~aL~~g 336 (628)
.+.+.+-+-|+-+|=-+.|.--+.+.+..-|+.|
T Consensus 77 p~~i~W~~~gvdiViEcTG~f~~~~~~~~hl~~g 110 (168)
T d2g82a1 77 PKEIPWAEAGVGVVIESTGVFTDADKAKAHLEGG 110 (168)
T ss_dssp GGGCCTGGGTEEEEEECSSSCCBHHHHTHHHHTT
T ss_pred hHHCcccccCCceeEeccccccchHHhhhhhccc
Confidence 2333333344444444468888888888888876
|
| >d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]
Probab=84.00 E-value=0.34 Score=45.60 Aligned_cols=36 Identities=25% Similarity=0.326 Sum_probs=31.7
Q ss_pred ecCCeEEEEec-Ch--hHHHHHHHHHcCCCEEEEECCCC
Q 006864 227 LVGKTLAVMGF-GK--VGSEVARRAKGLGMNVIAHDPYA 262 (628)
Q Consensus 227 l~GktiGIIGl-G~--IG~~vA~~l~~~G~~V~~~d~~~ 262 (628)
|.||++.|.|. |. ||+++|++|...|++|+..++..
T Consensus 4 l~gK~~lItGaag~~GIG~aiA~~la~~Ga~Vil~~~~~ 42 (268)
T d2h7ma1 4 LDGKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDR 42 (268)
T ss_dssp TTTCEEEECCCSSTTCHHHHHHHHHHHTTCEEEEEECSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHcCCEEEEEeCCh
Confidence 78999999995 54 99999999999999999887653
|
| >d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Transcriptional repressor Rex, C-terminal domain domain: Transcriptional repressor Rex, C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=83.96 E-value=0.29 Score=41.62 Aligned_cols=62 Identities=19% Similarity=0.295 Sum_probs=38.7
Q ss_pred eEEEEecChhHHHHHHHHH-cCCCEEEEE-CCCCChhHHHHcCCccc---CHHHHhc-cCCEEEEcCC
Q 006864 231 TLAVMGFGKVGSEVARRAK-GLGMNVIAH-DPYAPADKARAVGVELV---SFDQALA-TADFISLHMP 292 (628)
Q Consensus 231 tiGIIGlG~IG~~vA~~l~-~~G~~V~~~-d~~~~~~~a~~~g~~~~---sl~ell~-~aDvV~l~~P 292 (628)
++.|+|.|.+|+++++.+. .-|++++++ |......-..-.|+... .++++.+ ..++.++++|
T Consensus 5 ~v~I~GaG~~G~~l~~~l~~~~~~~iv~fiDdd~~k~G~~I~Gi~V~~~~~l~~~~~~~i~iai~~i~ 72 (126)
T d2dt5a2 5 GLCIVGMGRLGSALADYPGFGESFELRGFFDVDPEKVGRPVRGGVIEHVDLLPQRVPGRIEIALLTVP 72 (126)
T ss_dssp EEEEECCSHHHHHHHHCSCCCSSEEEEEEEESCTTTTTCEETTEEEEEGGGHHHHSTTTCCEEEECSC
T ss_pred eEEEEcCCHHHHHHHHhHhhcCCcEEEEEEeCchHhcCCEECCEEEecHHHHHHHHhhcccEEEEeCC
Confidence 7899999999999998764 457898886 54322111111244332 3555443 4667777776
|
| >d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=83.78 E-value=0.96 Score=38.89 Aligned_cols=31 Identities=29% Similarity=0.424 Sum_probs=24.7
Q ss_pred eEEEEe-cChhHHHHHHHHH-cCCCEEEE-ECCC
Q 006864 231 TLAVMG-FGKVGSEVARRAK-GLGMNVIA-HDPY 261 (628)
Q Consensus 231 tiGIIG-lG~IG~~vA~~l~-~~G~~V~~-~d~~ 261 (628)
+|+|+| .|+||+.+++.+. .-++++.+ +|+.
T Consensus 1 kI~v~Ga~GrMG~~i~~~i~~~~~~~l~~~~d~~ 34 (135)
T d1yl7a1 1 RVGVLGAKGKVGATMVRAVAAADDLTLSAELDAG 34 (135)
T ss_dssp EEEEETTTSHHHHHHHHHHHHSTTSEEEEEECTT
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecC
Confidence 689999 6999999999875 56788664 6754
|
| >d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=83.72 E-value=0.36 Score=47.12 Aligned_cols=38 Identities=24% Similarity=0.298 Sum_probs=33.2
Q ss_pred eeecCCeEEEEecC-hhHHHHHHHHHcCCCEEEEECCCC
Q 006864 225 VSLVGKTLAVMGFG-KVGSEVARRAKGLGMNVIAHDPYA 262 (628)
Q Consensus 225 ~~l~GktiGIIGlG-~IG~~vA~~l~~~G~~V~~~d~~~ 262 (628)
.+|.||++.|-|-+ .||+++|+.|...|++|++.|+..
T Consensus 3 m~l~gKvalITGas~GIG~aiA~~la~~Ga~Vvi~d~~~ 41 (302)
T d1gz6a_ 3 LRFDGRVVLVTGAGGGLGRAYALAFAERGALVVVNDLGG 41 (302)
T ss_dssp CCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCB
T ss_pred cCcCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCc
Confidence 46889999998766 599999999999999999998753
|
| >d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Dihydroxypyridine hydroxylase DhpH species: Arthrobacter nicotinovorans [TaxId: 29320]
Probab=83.64 E-value=0.53 Score=43.30 Aligned_cols=34 Identities=21% Similarity=0.191 Sum_probs=31.4
Q ss_pred cCCeEEEEecChhHHHHHHHHHcCCCEEEEECCC
Q 006864 228 VGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPY 261 (628)
Q Consensus 228 ~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~ 261 (628)
..++|.|||.|..|..+|..|+..|.+|.++++.
T Consensus 3 ~~~kV~IiGaG~aGl~~A~~L~~~G~~v~v~Er~ 36 (265)
T d2voua1 3 TTDRIAVVGGSISGLTAALMLRDAGVDVDVYERS 36 (265)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred CCCcEEEECcCHHHHHHHHHHHHCCCCEEEEeCC
Confidence 4578999999999999999999999999999965
|
| >d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3beta/17beta hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=83.42 E-value=0.32 Score=46.15 Aligned_cols=36 Identities=36% Similarity=0.342 Sum_probs=32.2
Q ss_pred eecCCeEEEEecC-hhHHHHHHHHHcCCCEEEEECCC
Q 006864 226 SLVGKTLAVMGFG-KVGSEVARRAKGLGMNVIAHDPY 261 (628)
Q Consensus 226 ~l~GktiGIIGlG-~IG~~vA~~l~~~G~~V~~~d~~ 261 (628)
.|.||++.|.|-+ .||+++|++|...|++|+..|+.
T Consensus 3 rL~gK~alITGas~GIG~aia~~la~~Ga~V~~~~~~ 39 (253)
T d1hxha_ 3 RLQGKVALVTGGASGVGLEVVKLLLGEGAKVAFSDIN 39 (253)
T ss_dssp TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence 4889999999854 69999999999999999999975
|
| >d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative dehydrogenase ARPG836 (MGC4172) species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.37 E-value=0.72 Score=43.59 Aligned_cols=88 Identities=17% Similarity=0.175 Sum_probs=53.4
Q ss_pred eecCCeEEEEec-ChhHHHHHHHHHcCCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEcCCCCcc--cccccc
Q 006864 226 SLVGKTLAVMGF-GKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPT--TSKIFN 302 (628)
Q Consensus 226 ~l~GktiGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~sl~ell~~aDvV~l~~Plt~~--t~~li~ 302 (628)
.++||++.|.|. +.||+++|++|...|++|++.++.. +..++. ...+.+.-...+++.++|-++.+ .+.+++
T Consensus 7 ~lk~Kv~lITGas~GIG~aiA~~la~~G~~Vv~~~r~~--~~l~~~---~~~l~~~~~~~~~~~~~~Dls~~~~v~~~v~ 81 (257)
T d1xg5a_ 7 RWRDRLALVTGASGGIGAAVARALVQQGLKVVGCARTV--GNIEEL---AAECKSAGYPGTLIPYRCDLSNEEDILSMFS 81 (257)
T ss_dssp GGTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH--HHHHHH---HHHHHHTTCSSEEEEEECCTTCHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH--HHHHHH---HHHHHhcCCCceEEEEEccCCCHHHHHHHHH
Confidence 489999999976 5799999999999999999998763 211110 00112211235677777766653 223332
Q ss_pred HHHHhcCCCCcEEEEcC
Q 006864 303 DETFAKMKKGVRIVNVA 319 (628)
Q Consensus 303 ~~~l~~mk~gailIN~a 319 (628)
...+.+++=-++||++
T Consensus 82 -~~~~~~g~iD~lVnnA 97 (257)
T d1xg5a_ 82 -AIRSQHSGVDICINNA 97 (257)
T ss_dssp -HHHHHHCCCSEEEECC
T ss_pred -HHHHhcCCCCEEEecc
Confidence 2333333334666765
|
| >d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sorbitol dehydrogenase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=83.31 E-value=0.37 Score=45.69 Aligned_cols=36 Identities=28% Similarity=0.252 Sum_probs=32.5
Q ss_pred eecCCeEEEEec-ChhHHHHHHHHHcCCCEEEEECCC
Q 006864 226 SLVGKTLAVMGF-GKVGSEVARRAKGLGMNVIAHDPY 261 (628)
Q Consensus 226 ~l~GktiGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~ 261 (628)
.|.||++.|.|- +.||+++|++|...|++|+..|+.
T Consensus 2 ~L~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~ 38 (256)
T d1k2wa_ 2 RLDGKTALITGSARGIGRAFAEAYVREGARVAIADIN 38 (256)
T ss_dssp TTTTEEEEEETCSSHHHHHHHHHHHHTTEEEEEEESC
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence 378999999976 679999999999999999999875
|
| >d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, middle domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=83.21 E-value=0.58 Score=43.17 Aligned_cols=37 Identities=27% Similarity=0.308 Sum_probs=33.7
Q ss_pred eecCCeEEEEecChhHHHHHHHHHcCCCEEEEECCCC
Q 006864 226 SLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA 262 (628)
Q Consensus 226 ~l~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~ 262 (628)
.-.+|++.|||-|..|-..|..|+..|++|..++...
T Consensus 46 ~~~~k~VvIIGaGpAGl~aA~~l~~~G~~v~l~E~~~ 82 (233)
T d1djqa3 46 TKNKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAE 82 (233)
T ss_dssp CSSCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred ccCCceEEEEcccHHHHHHHHHHHHhccceeeEeecc
Confidence 3578999999999999999999999999999998654
|
| >d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Klebsiella pneumoniae [TaxId: 573]
Probab=83.09 E-value=0.48 Score=46.20 Aligned_cols=34 Identities=24% Similarity=0.338 Sum_probs=31.5
Q ss_pred CCeEEEEecChhHHHHHHHHHcCCCEEEEECCCC
Q 006864 229 GKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA 262 (628)
Q Consensus 229 GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~ 262 (628)
.|+|.|||.|..|...|..|+..|.+|++++...
T Consensus 2 ~KKI~IIGaG~sGL~aA~~L~k~G~~V~viEk~~ 35 (314)
T d2bi7a1 2 SKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRD 35 (314)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSS
T ss_pred CCEEEEECCcHHHHHHHHHHHhCCCCEEEEECCC
Confidence 5899999999999999999999999999998654
|
| >d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase species: Pseudomonas sp., lb400 [TaxId: 306]
Probab=82.76 E-value=0.49 Score=45.31 Aligned_cols=36 Identities=22% Similarity=0.302 Sum_probs=32.7
Q ss_pred eecCCeEEEEec-ChhHHHHHHHHHcCCCEEEEECCC
Q 006864 226 SLVGKTLAVMGF-GKVGSEVARRAKGLGMNVIAHDPY 261 (628)
Q Consensus 226 ~l~GktiGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~ 261 (628)
.|.||++.|-|- +.||+++|+.|...|++|+..|+.
T Consensus 2 ~L~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~ 38 (276)
T d1bdba_ 2 KLKGEAVLITGGASGLGRALVDRFVAEGAKVAVLDKS 38 (276)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence 478999999976 689999999999999999999876
|
| >d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative zinc-binding alcohol dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=82.47 E-value=0.36 Score=43.47 Aligned_cols=85 Identities=16% Similarity=0.216 Sum_probs=56.9
Q ss_pred CCeEEEEe-cChhHHHHHHHHHcCCCE-EEEECCCCCh--hHHHHcCCccc------CHHHHhcc-----CCEEEEcCCC
Q 006864 229 GKTLAVMG-FGKVGSEVARRAKGLGMN-VIAHDPYAPA--DKARAVGVELV------SFDQALAT-----ADFISLHMPL 293 (628)
Q Consensus 229 GktiGIIG-lG~IG~~vA~~l~~~G~~-V~~~d~~~~~--~~a~~~g~~~~------sl~ell~~-----aDvV~l~~Pl 293 (628)
+++|.|.| .|.+|....+.++.+|++ |++.+..... ...++.|...+ ++.+.+++ .|+|+=++-
T Consensus 31 ~etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~~e~~~~l~~~~gad~vi~~~~~~~~~~~~~~~~~GvDvv~D~vG- 109 (187)
T d1vj1a2 31 NQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKCLFLTSELGFDAAVNYKTGNVAEQLREACPGGVDVYFDNVG- 109 (187)
T ss_dssp CCEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESSHHHHHHHHHHSCCSEEEETTSSCHHHHHHHHCTTCEEEEEESSC-
T ss_pred CCEEEEECCCchhhHHHHHHHHHcCCcceecccchHHHHhhhhhcccceEEeeccchhHHHHHHHHhccCceEEEecCC-
Confidence 47899998 599999999999999985 5555543211 22345665422 45555444 888887764
Q ss_pred CccccccccHHHHhcCCCCcEEEEcC
Q 006864 294 NPTTSKIFNDETFAKMKKGVRIVNVA 319 (628)
Q Consensus 294 t~~t~~li~~~~l~~mk~gailIN~a 319 (628)
.+ .-...++.++++..++.++
T Consensus 110 -g~----~~~~~~~~l~~~G~iv~~G 130 (187)
T d1vj1a2 110 -GD----ISNTVISQMNENSHIILCG 130 (187)
T ss_dssp -HH----HHHHHHTTEEEEEEEEEC-
T ss_pred -ch----hHHHHhhhccccccEEEec
Confidence 11 1356678888888888886
|
| >d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: 2,4-dienoyl-CoA reductase species: Yeast (Candida tropicalis) [TaxId: 5482]
Probab=81.94 E-value=1.4 Score=39.28 Aligned_cols=86 Identities=15% Similarity=0.145 Sum_probs=56.1
Q ss_pred cCCeEEEE--ecChhHHHHHHHHHcCCCEEEEECCCC-Ch----hHHHHcCCccc-C------------HHHHh----cc
Q 006864 228 VGKTLAVM--GFGKVGSEVARRAKGLGMNVIAHDPYA-PA----DKARAVGVELV-S------------FDQAL----AT 283 (628)
Q Consensus 228 ~GktiGII--GlG~IG~~vA~~l~~~G~~V~~~d~~~-~~----~~a~~~g~~~~-s------------l~ell----~~ 283 (628)
.|.++.|+ |.|.+|+...+.++.+|++|++.-+.. .. +..+++|+..+ + ..++. ..
T Consensus 28 ~g~~vli~~ga~g~vG~~aiqlAk~~Ga~vI~~v~~~~~~~~~~~~~~~lGad~vi~~~~~~~~~~~~~v~~~~~~~g~~ 107 (189)
T d1gu7a2 28 PGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNLDEVVASLKELGATQVITEDQNNSREFGPTIKEWIKQSGGE 107 (189)
T ss_dssp TTTCEEEESCTTSHHHHHHHHHHHHHTCEEEEEECCCTTHHHHHHHHHHHTCSEEEEHHHHHCGGGHHHHHHHHHHHTCC
T ss_pred CCCEEEEEeCCCchHHHHHHHHHhhcCCeEEEEEecccccchHHhhhhhccccEEEeccccchhHHHHHHHHHHhhccCC
Confidence 47888898 679999999999999999998864332 21 23456675422 1 11111 23
Q ss_pred CCEEEEcCCCCccccccccHHHHhcCCCCcEEEEcC
Q 006864 284 ADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVA 319 (628)
Q Consensus 284 aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~a 319 (628)
.|+++-++- .++ -...+..|+++..+|.++
T Consensus 108 vdvv~D~vg--~~~----~~~~~~~l~~~G~~v~~G 137 (189)
T d1gu7a2 108 AKLALNCVG--GKS----STGIARKLNNNGLMLTYG 137 (189)
T ss_dssp EEEEEESSC--HHH----HHHHHHTSCTTCEEEECC
T ss_pred ceEEEECCC--cch----hhhhhhhhcCCcEEEEEC
Confidence 677776653 111 245677788888888875
|
| >d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-glucose-4,6-dehydratase species: Yersinia pseudotuberculosis [TaxId: 633]
Probab=81.92 E-value=0.56 Score=45.45 Aligned_cols=36 Identities=25% Similarity=0.226 Sum_probs=32.7
Q ss_pred ecCCeEEEEe-cChhHHHHHHHHHcCCCEEEEECCCC
Q 006864 227 LVGKTLAVMG-FGKVGSEVARRAKGLGMNVIAHDPYA 262 (628)
Q Consensus 227 l~GktiGIIG-lG~IG~~vA~~l~~~G~~V~~~d~~~ 262 (628)
.+||+|.|.| .|-||+.+++.|...|.+|+++|+..
T Consensus 6 ~~~KkILVTG~tGfIGs~lv~~Ll~~g~~V~~~~r~~ 42 (356)
T d1rkxa_ 6 WQGKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTA 42 (356)
T ss_dssp HTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred hCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCC
Confidence 3689999998 88999999999999999999998764
|
| >d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: DTDP-4-dehydrorhamnose reductase RfbD species: Clostridium acetobutylicum [TaxId: 1488]
Probab=81.81 E-value=0.61 Score=43.35 Aligned_cols=56 Identities=16% Similarity=0.328 Sum_probs=39.7
Q ss_pred CeEEEEec-ChhHHHHHHHHHcCCCEEEEECCCCChhHHHHcCCcccCHHHHhc--cCCEEEEcC
Q 006864 230 KTLAVMGF-GKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALA--TADFISLHM 291 (628)
Q Consensus 230 ktiGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~sl~ell~--~aDvV~l~~ 291 (628)
++|.|.|- |-||+.+++.|+..|.+|++.|+..-. . ....+++++++ +.|+|+-+.
T Consensus 2 MKIlItGasGfiG~~l~~~L~~~g~~Vi~~~r~~~D-~-----~d~~~~~~~l~~~~~d~vih~a 60 (281)
T d1vl0a_ 2 MKILITGANGQLGREIQKQLKGKNVEVIPTDVQDLD-I-----TNVLAVNKFFNEKKPNVVINCA 60 (281)
T ss_dssp EEEEEESTTSHHHHHHHHHHTTSSEEEEEECTTTCC-T-----TCHHHHHHHHHHHCCSEEEECC
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCEEEEeechhcc-C-----CCHHHHHHHHHHcCCCEEEeec
Confidence 46899996 999999999999999999999976310 0 01113456665 458876443
|
| >d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 15-hydroxyprostaglandin dehydrogenase, PGDH species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.62 E-value=0.54 Score=44.36 Aligned_cols=87 Identities=16% Similarity=0.127 Sum_probs=52.2
Q ss_pred ecCCeEEEEec-ChhHHHHHHHHHcCCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEcCCCCcc--ccccccH
Q 006864 227 LVGKTLAVMGF-GKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPT--TSKIFND 303 (628)
Q Consensus 227 l~GktiGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~sl~ell~~aDvV~l~~Plt~~--t~~li~~ 303 (628)
+.||++.|-|- +.||+++|++|...|++|+..|+........ ...+.+......+..+.+-++++ .+.+++
T Consensus 1 i~GKvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~-----~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~- 74 (254)
T d2gdza1 1 VNGKVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQC-----KAALHEQFEPQKTLFIQCDVADQQQLRDTFR- 74 (254)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH-----HHHHTTTSCGGGEEEEECCTTSHHHHHHHHH-
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHH-----HHHHHHhcCCCcEEEEEeecCCHHHHHHHHH-
Confidence 46999999987 5599999999999999999998764221110 00122222334566666655543 233332
Q ss_pred HHHhcCCCCcEEEEcC
Q 006864 304 ETFAKMKKGVRIVNVA 319 (628)
Q Consensus 304 ~~l~~mk~gailIN~a 319 (628)
...+.+.+=-++||.+
T Consensus 75 ~~~~~~G~iDilVnnA 90 (254)
T d2gdza1 75 KVVDHFGRLDILVNNA 90 (254)
T ss_dssp HHHHHHSCCCEEEECC
T ss_pred HHHHHcCCcCeecccc
Confidence 2233333334788876
|
| >d1hdgo1 c.2.1.3 (O:1-148,O:313-331) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Thermotoga maritima [TaxId: 2336]
Probab=81.60 E-value=0.84 Score=40.86 Aligned_cols=101 Identities=21% Similarity=0.321 Sum_probs=56.0
Q ss_pred eEEEEecChhHHHHHHHHHc---CCCEEEEECCCCChhHH-HHcCCccc--CHH-HHhccCCEEEEcCCCCccccccccH
Q 006864 231 TLAVMGFGKVGSEVARRAKG---LGMNVIAHDPYAPADKA-RAVGVELV--SFD-QALATADFISLHMPLNPTTSKIFND 303 (628)
Q Consensus 231 tiGIIGlG~IG~~vA~~l~~---~G~~V~~~d~~~~~~~a-~~~g~~~~--sl~-ell~~aDvV~l~~Plt~~t~~li~~ 303 (628)
+|||=|||+||+.+.|.+.. .+.+|++.+...+.+.. .-+.+..+ .++ ++-..-|.+++ +.....+++.
T Consensus 2 kIgINGfGRIGR~v~R~~~~~~~~~i~vvaINd~~~~e~~ayLlkyDS~hG~~~~~v~~~~~~l~i----ng~~I~~~~~ 77 (169)
T d1hdgo1 2 RVAINGFGRIGRLVYRIIYERKNPDIEVVAINDLTDTKTLAHLLKYDSVHKKFPGKVEYTENSLIV----DGKEIKVFAE 77 (169)
T ss_dssp EEEEECCSHHHHHHHHHHHHHTCTTCEEEEEECSSCHHHHHHHHHCCTTTCCCSSCEEECSSEEEE----TTEEEEEECC
T ss_pred EEEEECCChHHHHHHHHHHhccCCCEEEEEeccCccHHHHHHHHhccccccccCceEEEECCEEEE----CCEEEEEEeC
Confidence 79999999999999998863 35888887443343322 11111110 011 11123355544 2333333433
Q ss_pred HHHhcC---CCCc-EEEEcCCCchhcHHHHHHHHhCC
Q 006864 304 ETFAKM---KKGV-RIVNVARGGVIDEEALVRALDSG 336 (628)
Q Consensus 304 ~~l~~m---k~ga-ilIN~aRg~~vde~aL~~aL~~g 336 (628)
...+.+ +-|+ ++|.|+ |.--+.+.+..-|+.|
T Consensus 78 ~~p~~i~W~~~gvD~ViEcT-G~f~t~~~~~~hl~~G 113 (169)
T d1hdgo1 78 PDPSKLPWKDLGVDFVIEST-GVFRNREKAELHLQAG 113 (169)
T ss_dssp SSGGGSCHHHHTCCEEEECS-SSCCBHHHHTHHHHTT
T ss_pred CChhhCCccccCCCEEEEec-ceeccccchhhhccCC
Confidence 222222 1122 788874 7777888888888876
|
| >d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), II [TaxId: 4076]
Probab=81.31 E-value=0.58 Score=44.37 Aligned_cols=36 Identities=25% Similarity=0.290 Sum_probs=32.7
Q ss_pred eecCCeEEEEecC-hhHHHHHHHHHcCCCEEEEECCC
Q 006864 226 SLVGKTLAVMGFG-KVGSEVARRAKGLGMNVIAHDPY 261 (628)
Q Consensus 226 ~l~GktiGIIGlG-~IG~~vA~~l~~~G~~V~~~d~~ 261 (628)
+|.||++.|-|-+ .||+++|++|...|++|+..|+.
T Consensus 5 ~L~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~ 41 (259)
T d2ae2a_ 5 NLEGCTALVTGGSRGIGYGIVEELASLGASVYTCSRN 41 (259)
T ss_dssp CCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence 5889999999876 59999999999999999999875
|
| >d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Xylitol dehydrogenase species: Gluconobacter oxydans [TaxId: 442]
Probab=81.22 E-value=0.51 Score=44.77 Aligned_cols=36 Identities=28% Similarity=0.322 Sum_probs=32.5
Q ss_pred eecCCeEEEEecC-hhHHHHHHHHHcCCCEEEEECCC
Q 006864 226 SLVGKTLAVMGFG-KVGSEVARRAKGLGMNVIAHDPY 261 (628)
Q Consensus 226 ~l~GktiGIIGlG-~IG~~vA~~l~~~G~~V~~~d~~ 261 (628)
.|.||++.|.|-+ .||+++|++|...|++|+..|+.
T Consensus 2 rL~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~ 38 (260)
T d1zema1 2 KFNGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMN 38 (260)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence 4789999999875 59999999999999999999975
|
| >d1gado1 c.2.1.3 (O:0-148,O:313-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Escherichia coli [TaxId: 562]
Probab=81.16 E-value=0.76 Score=41.05 Aligned_cols=100 Identities=17% Similarity=0.302 Sum_probs=55.4
Q ss_pred eEEEEecChhHHHHHHHHHcC-CCEEEEECCCCChhH-HHHcCCccc--CHH-HHhccCCEEEEcCCCCccccccccH--
Q 006864 231 TLAVMGFGKVGSEVARRAKGL-GMNVIAHDPYAPADK-ARAVGVELV--SFD-QALATADFISLHMPLNPTTSKIFND-- 303 (628)
Q Consensus 231 tiGIIGlG~IG~~vA~~l~~~-G~~V~~~d~~~~~~~-a~~~g~~~~--sl~-ell~~aDvV~l~~Plt~~t~~li~~-- 303 (628)
+|||=|||+||+.+.|.+... .++|.+.+...+.+. +.-+.+..+ .++ ++-..-+.+++ +...-.+++.
T Consensus 3 kigINGFGRIGR~v~R~~~~~~~i~ivaINd~~~~~~~ayLl~yDSvhG~~~~~v~~~~~~l~i----ng~~I~i~~~~~ 78 (166)
T d1gado1 3 KVGINGFGRIGRIVFRAAQKRSDIEIVAINDLLDADYMAYMLKYDSTHGRFDGTVEVKDGHLIV----NGKKIRVTAERD 78 (166)
T ss_dssp EEEEECCSHHHHHHHHHHHTCSSEEEEEEECSSCHHHHHHHHHCCTTTCSCSSCEEEETTEEEE----TTEEEEEECCSS
T ss_pred EEEEECCcHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHhhhheecCCCCCcCCeEEEeCCEEEE----CCEEEEEEeCCC
Confidence 699999999999999998766 488888754333332 221211111 111 11123344444 2222333332
Q ss_pred -HHHhc--CCCCcEEEEcCCCchhcHHHHHHHHhCC
Q 006864 304 -ETFAK--MKKGVRIVNVARGGVIDEEALVRALDSG 336 (628)
Q Consensus 304 -~~l~~--mk~gailIN~aRg~~vde~aL~~aL~~g 336 (628)
+.+.+ +.- =++|+|. |.--+.+.+..-|+.|
T Consensus 79 p~~i~W~~~gv-DiViEcT-G~f~t~~~~~~hl~~g 112 (166)
T d1gado1 79 PANLKWDEVGV-DVVAEAT-GLFLTDETARKHITAG 112 (166)
T ss_dssp GGGGCHHHHTC-SEEEECS-SSCCSHHHHTHHHHTT
T ss_pred hHHCCccccCC-CEEEEcc-ccccCHHHHHHHhcCC
Confidence 22221 222 2777774 7777778777778777
|
| >d1rm4a1 c.2.1.3 (A:1-148,A:313-333) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Spinach (Spinacia oleracea) [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Spinach (Spinacia oleracea) [TaxId: 3562]
Probab=81.06 E-value=0.75 Score=41.31 Aligned_cols=100 Identities=22% Similarity=0.385 Sum_probs=53.9
Q ss_pred eEEEEecChhHHHHHHHHHcCC---CEEEEE-CCCCChhHHH-HcCCccc--CHH-HHh-ccCCEEEEcCCCCccccccc
Q 006864 231 TLAVMGFGKVGSEVARRAKGLG---MNVIAH-DPYAPADKAR-AVGVELV--SFD-QAL-ATADFISLHMPLNPTTSKIF 301 (628)
Q Consensus 231 tiGIIGlG~IG~~vA~~l~~~G---~~V~~~-d~~~~~~~a~-~~g~~~~--sl~-ell-~~aDvV~l~~Plt~~t~~li 301 (628)
+|||=|||+||+.+.|.+.... ++|.+. |+. +.+... -+.+..+ .++ ++- ..-+.+++ +.....+.
T Consensus 2 kIgINGfGRIGR~v~R~~~~~~~~~i~ivaINd~~-~~~~~ayLlkyDSvhG~~~~~i~~~~~~~~~i----ng~~I~~~ 76 (172)
T d1rm4a1 2 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVINDTG-GVKQASHLLKYDSILGTFDADVKTAGDSAISV----DGKVIKVV 76 (172)
T ss_dssp EEEEECCSHHHHHHHHHHHHCSSCSEEEEEEECTT-CHHHHHHHHHCCTTTCSCSSCEEECTTSEEEE----TTEEEEEE
T ss_pred EEEEECCCHHHHHHHHHHHhCCCCCEEEEEEcCCC-CHHHHHHHHhcCcccccccceeEecCCcceEE----CCEEEEEe
Confidence 7999999999999999876433 677776 553 333221 1111111 111 111 12233333 22222333
Q ss_pred cH---HHHhcCCCCc-EEEEcCCCchhcHHHHHHHHhCC
Q 006864 302 ND---ETFAKMKKGV-RIVNVARGGVIDEEALVRALDSG 336 (628)
Q Consensus 302 ~~---~~l~~mk~ga-ilIN~aRg~~vde~aL~~aL~~g 336 (628)
+. ..+.+-+-|+ ++|+|+ |.--+.+.+..-|+.|
T Consensus 77 ~~~~p~~i~W~~~gvDiViEcT-G~f~~~~~~~~hl~~G 114 (172)
T d1rm4a1 77 SDRNPVNLPWGDMGIDLVIEGT-GVFVDRDGAGKHLQAG 114 (172)
T ss_dssp CCSCGGGSCHHHHTCCEEEECS-SSCCBHHHHHHHHHTT
T ss_pred cCCChHHCChhhcCCCEEEecC-ceEccHHHHHHHHhcC
Confidence 22 2222212233 888874 7777888888888877
|
| >d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Myxococcus xanthus [TaxId: 34]
Probab=81.06 E-value=0.55 Score=42.92 Aligned_cols=32 Identities=25% Similarity=0.354 Sum_probs=29.7
Q ss_pred CeEEEEecChhHHHHHHHHHcCCCEEEEECCC
Q 006864 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPY 261 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~ 261 (628)
++|.|||-|..|...|.+|+..|++|++++..
T Consensus 1 m~V~IIGaG~aGL~aA~~L~~~G~~V~vlE~~ 32 (347)
T d2ivda1 1 MNVAVVGGGISGLAVAHHLRSRGTDAVLLESS 32 (347)
T ss_dssp CCEEEECCBHHHHHHHHHHHTTTCCEEEECSS
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCEEEEecC
Confidence 47999999999999999999999999999864
|
| >d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase species: Bacillus megaterium [TaxId: 1404]
Probab=80.81 E-value=0.9 Score=43.07 Aligned_cols=38 Identities=21% Similarity=0.229 Sum_probs=33.2
Q ss_pred eeecCCeEEEEe-cChhHHHHHHHHHcCCCEEEEECCCC
Q 006864 225 VSLVGKTLAVMG-FGKVGSEVARRAKGLGMNVIAHDPYA 262 (628)
Q Consensus 225 ~~l~GktiGIIG-lG~IG~~vA~~l~~~G~~V~~~d~~~ 262 (628)
.+|.||++.|.| -+.||+++|++|...|++|++.++..
T Consensus 3 ~dL~gK~alITGas~GIG~aia~~la~~G~~Vv~~~r~~ 41 (261)
T d1geea_ 3 KDLEGKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSK 41 (261)
T ss_dssp GGGTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 368999999987 46799999999999999999988764
|
| >d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 7-alpha-hydroxysteroid dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=80.78 E-value=0.44 Score=45.19 Aligned_cols=86 Identities=26% Similarity=0.271 Sum_probs=52.4
Q ss_pred eecCCeEEEEec-ChhHHHHHHHHHcCCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEcCCCCcc--cccccc
Q 006864 226 SLVGKTLAVMGF-GKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPT--TSKIFN 302 (628)
Q Consensus 226 ~l~GktiGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~sl~ell~~aDvV~l~~Plt~~--t~~li~ 302 (628)
.|.||++.|-|- +.||+++|++|...|++|+..|+.. +..++. ...+.+. ..+++.+.+-++++ .+.++
T Consensus 8 ~L~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~--~~~~~~---~~~l~~~--g~~~~~~~~Dvs~~~~~~~~~- 79 (255)
T d1fmca_ 8 RLDGKCAIITGAGAGIGKEIAITFATAGASVVVSDINA--DAANHV---VDEIQQL--GGQAFACRCDITSEQELSALA- 79 (255)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESCH--HHHHHH---HHHHHHT--TCCEEEEECCTTCHHHHHHHH-
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH--HHHHHH---HHHHHHc--CCcEEEEEccCCCHHHHHHHH-
Confidence 589999999976 5699999999999999999998753 221110 0012211 24667777766542 22233
Q ss_pred HHHHhcCCCCcEEEEcC
Q 006864 303 DETFAKMKKGVRIVNVA 319 (628)
Q Consensus 303 ~~~l~~mk~gailIN~a 319 (628)
+...+.+.+=-++||++
T Consensus 80 ~~~~~~~g~iDilvnnA 96 (255)
T d1fmca_ 80 DFAISKLGKVDILVNNA 96 (255)
T ss_dssp HHHHHHHSSCCEEEECC
T ss_pred HHHHHHcCCCCEeeeCC
Confidence 22233333344677765
|
| >d2g17a1 c.2.1.3 (A:1-153,A:309-334) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC species: Salmonella typhimurium [TaxId: 90371]
Probab=80.39 E-value=1.2 Score=39.60 Aligned_cols=93 Identities=15% Similarity=0.164 Sum_probs=55.3
Q ss_pred CeEEEEe-cChhHHHHHHHHHcC-CCEEEEE---CC--CCChhHHHH----cCC---c---ccCHHHHhccCCEEEEcCC
Q 006864 230 KTLAVMG-FGKVGSEVARRAKGL-GMNVIAH---DP--YAPADKARA----VGV---E---LVSFDQALATADFISLHMP 292 (628)
Q Consensus 230 ktiGIIG-lG~IG~~vA~~l~~~-G~~V~~~---d~--~~~~~~a~~----~g~---~---~~sl~ell~~aDvV~l~~P 292 (628)
.+|||+| .|-.|+++.+.|... .+++... .. ......... .+. . ..+.+.....+|++++++|
T Consensus 2 ikVaIiGATGyvG~eLlrlL~~HP~~ei~~l~~~s~~~~aGk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvf~alp 81 (179)
T d2g17a1 2 LNTLIVGASGYAGAELVSYVNRHPHMTITALTVSAQSNDAGKLISDLHPQLKGIVDLPLQPMSDVRDFSADVDVVFLATA 81 (179)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHCTTEEEEEEEEETTCTTTTCBHHHHCGGGTTTCCCBEEEESCGGGTCTTCCEEEECSC
T ss_pred cEEEEECcccHHHHHHHHHHHhCCCCceEeeEeecccccccccccccccccccccccccccchhhhhhhcccceeecccc
Confidence 3799999 899999999999986 5676543 11 111111110 011 1 1134455678999999998
Q ss_pred CCccccccccHHHHhcCCCCcEEEEcCCCchhcHH
Q 006864 293 LNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEE 327 (628)
Q Consensus 293 lt~~t~~li~~~~l~~mk~gailIN~aRg~~vde~ 327 (628)
-.. . .+..-...+.+..+||.+..--.+..
T Consensus 82 ~~~--s---~~~~~~~~~~~~~vIDlSadfRl~~~ 111 (179)
T d2g17a1 82 HEV--S---HDLAPQFLQAGCVVFDLSGAFRVNDR 111 (179)
T ss_dssp HHH--H---HHHHHHHHHTTCEEEECSSTTSSSCH
T ss_pred chh--H---HHHhhhhhhcCceeeccccccccccc
Confidence 322 1 11122235688999999865444333
|
| >d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: D(-)-3-hydroxybutyrate dehydrogenase species: Pseudomonas fragi [TaxId: 296]
Probab=80.11 E-value=0.62 Score=44.05 Aligned_cols=36 Identities=22% Similarity=0.295 Sum_probs=31.6
Q ss_pred ecCCeEEEEecCh-hHHHHHHHHHcCCCEEEEECCCC
Q 006864 227 LVGKTLAVMGFGK-VGSEVARRAKGLGMNVIAHDPYA 262 (628)
Q Consensus 227 l~GktiGIIGlG~-IG~~vA~~l~~~G~~V~~~d~~~ 262 (628)
|.||++.|-|-+. ||+++|++|...|++|+..++..
T Consensus 2 L~gK~alITGas~GIG~aiA~~la~~Ga~V~~~~r~~ 38 (260)
T d1x1ta1 2 LKGKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGD 38 (260)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEECCSC
T ss_pred CCcCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 6899888887655 99999999999999999998764
|
| >d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein TTHA0369 species: Thermus thermophilus [TaxId: 274]
Probab=80.09 E-value=0.93 Score=42.64 Aligned_cols=36 Identities=25% Similarity=0.277 Sum_probs=32.7
Q ss_pred ecCCeEEEEe-cChhHHHHHHHHHcCCCEEEEECCCC
Q 006864 227 LVGKTLAVMG-FGKVGSEVARRAKGLGMNVIAHDPYA 262 (628)
Q Consensus 227 l~GktiGIIG-lG~IG~~vA~~l~~~G~~V~~~d~~~ 262 (628)
|.||++.|-| -+.||+++|++|...|++|+..|+..
T Consensus 3 l~GK~alITGas~GIG~aia~~la~~G~~V~~~~~~~ 39 (248)
T d2d1ya1 3 FAGKGVLVTGGARGIGRAIAQAFAREGALVALCDLRP 39 (248)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESST
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence 7899999998 67899999999999999999998764
|