Citrus Sinensis ID: 006897
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 627 | 2.2.26 [Sep-21-2011] | |||||||
| Q3E9B8 | 624 | ABC transporter G family | yes | no | 0.940 | 0.945 | 0.608 | 0.0 | |
| Q9FLX5 | 589 | ABC transporter G family | no | no | 0.885 | 0.942 | 0.445 | 1e-136 | |
| Q9SW08 | 577 | ABC transporter G family | no | no | 0.867 | 0.942 | 0.420 | 1e-130 | |
| Q9SIT6 | 649 | ABC transporter G family | no | no | 0.840 | 0.812 | 0.425 | 1e-122 | |
| Q9MAH4 | 590 | ABC transporter G family | no | no | 0.886 | 0.942 | 0.403 | 1e-120 | |
| Q9ZUT0 | 755 | ABC transporter G family | no | no | 0.838 | 0.696 | 0.322 | 1e-82 | |
| Q9M2V7 | 736 | ABC transporter G family | no | no | 0.843 | 0.718 | 0.316 | 2e-82 | |
| O80946 | 740 | ABC transporter G family | no | no | 0.843 | 0.714 | 0.315 | 9e-82 | |
| Q9M2V5 | 708 | ABC transporter G family | no | no | 0.843 | 0.747 | 0.308 | 2e-81 | |
| Q9M2V6 | 662 | ABC transporter G family | no | no | 0.856 | 0.811 | 0.308 | 1e-80 |
| >sp|Q3E9B8|AB23G_ARATH ABC transporter G family member 23 OS=Arabidopsis thaliana GN=ABCG23 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 745 bits (1924), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 401/659 (60%), Positives = 479/659 (72%), Gaps = 69/659 (10%)
Query: 1 MGSCFQQPRPSI---EDDSAVLFSTSNSPEEYSTSPSSSFYQPTPSPSLPPQRLKTTCKV 57
M SCF + E+DS +LFS SNSP+E+S++ SS P P+P+ +
Sbjct: 1 MASCFHPSAMATSHREEDSIILFSASNSPDEFSSASSSFSSSPLPTPN--------RYSL 52
Query: 58 TVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRII 117
TV NLSY I H P IL SVS A S+ILAVVGPSGTGKS+LL+II
Sbjct: 53 TVTNLSYTIN----------HTP-----ILNSVSLAAESSKILAVVGPSGTGKSTLLKII 97
Query: 118 SGRVRDQDFDPRS-ITVNCHQIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLK 176
SGRV + DP S + +N +I QLR++CGFV Q+D+LLPLLTVKETLM+SA F L+
Sbjct: 98 SGRVNHKALDPSSAVLMNNRKITDYNQLRRLCGFVPQDDDLLPLLTVKETLMYSAKFSLR 157
Query: 177 GMSHKEKEDRVESLMDELGLTHVAGSFVG--DEENRGISG-------------------- 214
+ KE+E+RVESL+ +LGL V SFVG DEE+RG+SG
Sbjct: 158 DSTAKEREERVESLLSDLGLVLVQDSFVGEGDEEDRGVSGGERKRVSIAVEMIRDPPILL 217
Query: 215 -------LDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHY 267
LDS ++LQV+ELLA+MAK+KQRTV+ SIHQPSYRIL YIS +LILSRGSV+H
Sbjct: 218 LDEPTSGLDSRNSLQVVELLATMAKSKQRTVLFSIHQPSYRILDYISDYLILSRGSVIHL 277
Query: 268 GSLELLEETINNLGYQIPTQLNAIEFAMEIMHPLEDSYSNNNNFLPSVEDAEQFPDLRCE 327
GSLE LE++I LG+QIP QLN IEFAMEI+ L N+ + VE + +P+ E
Sbjct: 278 GSLEHLEDSIAKLGFQIPEQLNPIEFAMEIVESLRTFKPNS---VAVVESSSMWPE-NNE 333
Query: 328 KVGGVEHQQHAFFLILYEIMVLCSRFWKIIYRTKQLFLARTMQALVGGFGLGSVYVRVRK 387
G + ++ L + EI LCSRF KIIYRTKQLFLARTMQA+V G GLGSVY R+++
Sbjct: 334 NDGIISKKEAFRVLDVTEISYLCSRFCKIIYRTKQLFLARTMQAVVAGLGLGSVYTRLKR 393
Query: 388 DEAGVAERLGLFAFSLSFLLSSTVEALPIYLQERRVLMKEASREAYRISSYLIANTIVFL 447
DE GVAERLGLFAFSLSFLLSSTVEALPIYL+ERRVLMKE+SR +YRISSY+IANTI F+
Sbjct: 394 DEEGVAERLGLFAFSLSFLLSSTVEALPIYLRERRVLMKESSRGSYRISSYMIANTIAFV 453
Query: 448 PFLFVVSLLFAIPVYWIVGLNPSIEAFVFFIFVVWLIVLMASSLVLFLSAISPDFISGNS 507
PFLFVVSLLF+IPVYWIVGLNPSI+AF FF+ VWLI+LMASSLVLFLSA+SPDFISGNS
Sbjct: 454 PFLFVVSLLFSIPVYWIVGLNPSIQAFSFFVLCVWLIILMASSLVLFLSAVSPDFISGNS 513
Query: 508 LICTVLGAFFLFSGYFIPKEYIPKYWIFMYYISLYRYPLDSLLTNEYWSARGECFSWQKY 567
LICTVLGAFFLFSGYFIPKE IPK W+FMYY+SLYRYPL+S++ NEYWS R ECFS
Sbjct: 514 LICTVLGAFFLFSGYFIPKEKIPKPWMFMYYVSLYRYPLESMVVNEYWSMREECFSSGNM 573
Query: 568 NNVDGDHFSKCLLTGNDVLKSRGLEKDTRWVNVGVMLAFFLFYRVLCWIILSRRASKTT 626
CL+TG DVLK RGL+KDTRW+NVG+MLAFF+FYR+LCW IL R+ASK+T
Sbjct: 574 G---------CLMTGEDVLKERGLDKDTRWINVGIMLAFFVFYRILCWGILLRKASKST 623
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FLX5|AB8G_ARATH ABC transporter G family member 8 OS=Arabidopsis thaliana GN=ABCG8 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 486 bits (1250), Expect = e-136, Method: Compositional matrix adjust.
Identities = 270/606 (44%), Positives = 390/606 (64%), Gaps = 51/606 (8%)
Query: 44 PSLPPQRLKTTCKVTVRNLSYAIQPNTSILSHLLHEPKV--PLHILKSVSFEARDSEILA 101
PS PP+ T +T ++SY I P TS+ LL P P IL++++ A +EILA
Sbjct: 5 PSPPPETAAYT--LTTSSISYTI-PKTSL--SLLRFPATEPPSFILRNITLTAHPTEILA 59
Query: 102 VVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKKPAQLRKICGFVAQEDNLLPLL 161
VVGPSG GKS+LL I++ + SI +N I P+ RKI +V Q D+ PLL
Sbjct: 60 VVGPSGAGKSTLLDILASKTSPTS---GSILLNSIPIN-PSSYRKISSYVPQHDSFFPLL 115
Query: 162 TVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHV-----AGSFVGDEENR---GIS 213
TV ET F+A L S + V SL+ EL LTH+ A G E R G+S
Sbjct: 116 TVSETFSFAACLLLPNPSIVS--ETVTSLLSELNLTHLSHTRLAQGLSGGERRRVSIGLS 173
Query: 214 ---------------GLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLI 258
GLDS SA VI +L S+A ++QRTV+LSIHQPS++IL I + L+
Sbjct: 174 LLHDPCFLLLDEPTSGLDSKSAFDVIHILKSIAVSRQRTVILSIHQPSFKILSIIDRLLL 233
Query: 259 LSRGSVVHYGSLELLEETINNLGYQIPTQLNAIEFAMEIMHPLEDSYSNNN-NFLPSVED 317
LS+G+VV++G L+ LE + G+ +P QLN++E+AMEI+ L +S N + LPS+E+
Sbjct: 234 LSKGTVVYHGRLDSLEGFLLFKGFTVPPQLNSLEYAMEILQELRESDGNTDATALPSIEN 293
Query: 318 AEQFPDLRCEKVGGVEHQQHAFFLILYEIMVLCSRFWKIIYRTKQLFLARTMQALVGGFG 377
+Q EK V +++ + EI +L RFWKIIYRT+QL L ++ALV G
Sbjct: 294 RKQ-----REKQSIVRYRKSR----ITEISLLARRFWKIIYRTRQLLLTNALEALVVGLV 344
Query: 378 LGSVYVRVRKDEAGVAERLGLFAFSLSFLLSSTVEALPIYLQERRVLMKEASREAYRISS 437
LG++Y+ + +AG+ +R G+FAF+L+FLLSST E LPI++ ER +L++E S YR+SS
Sbjct: 345 LGTIYINIGIGKAGIEKRFGMFAFTLTFLLSSTTETLPIFINERPILLRETSSGIYRLSS 404
Query: 438 YLIANTIVFLPFLFVVSLLFAIPVYWIVGLNPSIEAFVFFIFVVWLIVLMASSLVLFLSA 497
+++ANT+VFLP+LFV+S+++++ VY+++GL P+ +AF +F+ V+W+I+LMA+S VLFLS+
Sbjct: 405 HILANTLVFLPYLFVISIIYSVSVYFLIGLCPTWQAFGYFVLVIWIILLMANSFVLFLSS 464
Query: 498 ISPDFISGNSLICTVLGAFFLFSGYFIPKEYIPKYWIFMYYISLYRYPLDSLLTNEYWSA 557
++P++I+G SL+ +L AFFLFSGYFI KE +PKYW+FMY+ S+Y+Y LD+LL NEY
Sbjct: 465 LAPNYITGTSLVTILLAAFFLFSGYFISKESLPKYWLFMYFFSMYKYALDALLINEYSCL 524
Query: 558 RGECFSWQKYNNVDGDHFSKCLLTGNDVLKSRGLEKDTRWVNVGVMLAFFLFYRVLCWII 617
+C W ++ C++TG DVLK +GL + RW NV V+L FF+ YRVLC++
Sbjct: 525 ASKCLVW-----LEEAQTKICMVTGGDVLKKKGLHEKQRWFNVYVLLGFFVLYRVLCFLA 579
Query: 618 LSRRAS 623
L RR S
Sbjct: 580 LLRRVS 585
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SW08|AB4G_ARATH ABC transporter G family member 4 OS=Arabidopsis thaliana GN=ABCG4 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 465 bits (1197), Expect = e-130, Method: Compositional matrix adjust.
Identities = 250/595 (42%), Positives = 384/595 (64%), Gaps = 51/595 (8%)
Query: 57 VTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRI 116
++ ++SYA +P LS LL + P IL++++ + S+ILA++GPSG GKS+LL I
Sbjct: 6 LSTSSISYA-KP----LSPLLLTAEQPSFILRNITLTSHPSQILAIIGPSGAGKSTLLDI 60
Query: 117 ISGRVRDQDFDPRSITVNCHQIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRL- 175
++ R SI +N I P+ RKI +V Q D PLLTV ET FSA+ L
Sbjct: 61 LAARTSPTS---GSILLNSVLIN-PSSYRKISSYVPQHDTFFPLLTVSETFTFSASLLLP 116
Query: 176 KGMSHKEKEDRVESLMDELGLTHVAGSFVGDEENRG-----------------------I 212
K +S + V SL+ EL LTH+A + +G + G
Sbjct: 117 KNLS--KVSSVVASLLKELNLTHLAHTRLGQGLSGGERRRVSIGLSLLHDPEVLLLDEPT 174
Query: 213 SGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGSLEL 272
SGLDS SA V+++L S+A +++R V+LSIHQPS++IL I + L+LS+G++V++G L+L
Sbjct: 175 SGLDSKSAFDVVQILKSIATSRERIVILSIHQPSFKILSLIDRVLLLSKGTIVYHGRLDL 234
Query: 273 LEETINNLGYQIPTQLNAIEFAMEIMHPLEDSYSNNNNFLPSVEDAEQFPDLR--CEKVG 330
LE + + G+ +P+QLN++E+AMEI+ + D Y N N LP + P+ + +K
Sbjct: 235 LEAFLLSKGFTVPSQLNSLEYAMEILQNIRDPYENANIALP-----DHCPESKKQNQKQS 289
Query: 331 GVEHQQHAFFLILYEIMVLCSRFWKIIYRTKQLFLARTMQALVGGFGLGSVYVRVRKDEA 390
V ++ + EI +L SRFWKIIYRT+QL L +++LV G LG++Y+ + +
Sbjct: 290 IVRYKSSR----ITEISLLSSRFWKIIYRTRQLLLTNILESLVVGLVLGTIYLNIGTGKE 345
Query: 391 GVAERLGLFAFSLSFLLSSTVEALPIYLQERRVLMKEASREAYRISSYLIANTIVFLPFL 450
G+ +R GLFAF+L+FLLSST + LPI++ ER +L++E S YR+SS+++ANT+VFLP+L
Sbjct: 346 GIRKRFGLFAFTLTFLLSSTTQTLPIFIDERPILLRETSSGLYRLSSHILANTLVFLPYL 405
Query: 451 FVVSLLFAIPVYWIVGLNPSIEAFVFFIFVVWLIVLMASSLVLFLSAISPDFISGNSLIC 510
++++++++ +Y++VGL S +A +F+ V+W+IVLMA+S VLFLS+++P++I+G S +
Sbjct: 406 LLIAIIYSVSLYFLVGLCFSWQALAYFVLVIWIIVLMANSFVLFLSSLAPNYIAGTSSVT 465
Query: 511 TVLGAFFLFSGYFIPKEYIPKYWIFMYYISLYRYPLDSLLTNEYWSARGECFSWQKYNNV 570
+L AFFLFSGYFI KE +PKYW+FMY+ S+Y+Y LD+LL NEY +C W + +V
Sbjct: 466 ILLAAFFLFSGYFISKESLPKYWLFMYFFSMYKYALDALLINEYSCLHNKCLVWFEEASV 525
Query: 571 DGDHFSKCLLTGNDVLKSRGLEKDTRWVNVGVMLAFFLFYRVLCWIILSRRASKT 625
+ CL+TG DVL GL + RW NV ++L FF+ YRVLC+++L +R S +
Sbjct: 526 NS-----CLVTGGDVLDKNGLHERQRWFNVYMLLGFFVLYRVLCFLVLLKRVSGS 575
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SIT6|AB5G_ARATH ABC transporter G family member 5 OS=Arabidopsis thaliana GN=ABCG5 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 439 bits (1128), Expect = e-122, Method: Compositional matrix adjust.
Identities = 256/602 (42%), Positives = 359/602 (59%), Gaps = 75/602 (12%)
Query: 85 HILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKKPAQL 144
H+LK V+ A+ EILA+VGPSG GKSSLL I++ R+ Q S+ VN + + A
Sbjct: 61 HVLKGVTCRAKPWEILAIVGPSGAGKSSLLEILAARLIPQT---GSVYVNKRPVDR-ANF 116
Query: 145 RKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAGSFV 204
+KI G+V Q+D L PLLTV+ETL+FSA RLK + E RV+SL+ ELGL VA + V
Sbjct: 117 KKISGYVTQKDTLFPLLTVEETLLFSAKLRLK-LPADELRSRVKSLVHELGLEAVATARV 175
Query: 205 GDEENRGISG---------------------------LDSTSALQVIELLASMAKAKQRT 237
GD+ RGISG LDSTSAL +I++L MA+ + RT
Sbjct: 176 GDDSVRGISGGERRRVSIGVEVIHDPKVLILDEPTSGLDSTSALLIIDMLKHMAETRGRT 235
Query: 238 VVLSIHQPSYRILQYISKFLILSRGSVVHYGSLELLEETINNLGYQIPTQLNAIEFAMEI 297
++L+IHQP +RI++ + L+L+ GS + GS++ L + + G P N +EFA+E
Sbjct: 236 IILTIHQPGFRIVKQFNSVLLLANGSTLKQGSVDQLGVYLRSNGLHPPLHENIVEFAIES 295
Query: 298 MHP------LEDSYSNNNNFLPSV-------EDAEQ------------FPDLRCEKVG-- 330
+ L++S + P ED++ F R VG
Sbjct: 296 IESITKQQRLQESRRAAHVLTPQTTLQEKRSEDSQGESKSGKFTLQQLFQQTRVADVGTM 355
Query: 331 --GVEHQQHAFFLILYEIMVLCSRFWKIIYRTKQLFLARTMQALVGGFGLGSVYVRVRKD 388
E + L E M+L RF K I+RTK+LF RT+Q L G LG ++ ++ D
Sbjct: 356 NIATEFTRDFANSRLEETMILTHRFSKNIFRTKELFACRTVQMLGSGIVLGLIFHNLKDD 415
Query: 389 EAGVAERLGLFAFSLSFLLSSTVEALPIYLQERRVLMKEASREAYRISSYLIANTIVFLP 448
G ER+GLFAF L+FLL+ST+EALPI+LQER +LMKE S +YR+SSY +AN +V+LP
Sbjct: 416 LKGARERVGLFAFILTFLLTSTIEALPIFLQEREILMKETSSGSYRVSSYAVANGLVYLP 475
Query: 449 FLFVVSLLFAIPVYWIVGLNPSIEAFVFFIFVVWLIVLMASSLVLFLSAISPDFISGNSL 508
FL ++++LF+ PVYW+VGLNPS AF+ F ++WLI+ A+S+V+ SA+ P+FI GNS+
Sbjct: 476 FLLILAILFSTPVYWLVGLNPSFMAFLHFSLLIWLILYTANSVVVCFSALVPNFIVGNSV 535
Query: 509 ICTVLGAFFLFSGYFIPKEYIPKYWIFMYYISLYRYPLDSLLTNEYWSARGECFSWQKYN 568
I V+G+FFLFSGYFI IP YWIFM+YISL++YP + L NE+ S +C +
Sbjct: 536 ISGVMGSFFLFSGYFISNHEIPGYWIFMHYISLFKYPFEGFLINEF-SKSNKCLEY---- 590
Query: 569 NVDGDHFSKCLLTGNDVLKSRGLEKDTRWVNVGVMLAFFLFYRVLCWIIL----SRRASK 624
F KCL+T D+LK +++RW NV +ML F L YR + ++IL S+R+ K
Sbjct: 591 -----GFGKCLVTEEDLLKEERYGEESRWRNVVIMLCFVLLYRFISYVILRCRCSQRSFK 645
Query: 625 TT 626
TT
Sbjct: 646 TT 647
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9MAH4|AB10G_ARATH ABC transporter G family member 10 OS=Arabidopsis thaliana GN=ABCG10 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 432 bits (1112), Expect = e-120, Method: Compositional matrix adjust.
Identities = 250/619 (40%), Positives = 365/619 (58%), Gaps = 63/619 (10%)
Query: 40 PTPSPSLPPQRLKTTCKVTVRNLSYAIQPNTSILSHL--LHEPKVPLHILKSVSFEARDS 97
P +P +P R + + ++ +NLSY I NT S+L L K ILK VS +AR +
Sbjct: 4 PVKAP-IPGGR-EISYRLETKNLSYRIGGNTPKFSNLCGLLSEKEEKVILKDVSCDARSA 61
Query: 98 EILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKKPAQLRKICGFVAQEDNL 157
EI A+ GPSG GK++LL I++G+V + + VN + P + R++ GFV QED L
Sbjct: 62 EITAIAGPSGAGKTTLLEILAGKVSHGKVSGQ-VLVNGRPMDGP-EYRRVSGFVPQEDAL 119
Query: 158 LPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAGSFVGDEENRGISG--- 214
P LTV+ETL +SA RLK K+ +V+ L+ ELGL HVA S +G GISG
Sbjct: 120 FPFLTVQETLTYSALLRLK-TKRKDAAAKVKRLIQELGLEHVADSRIGQGSRSGISGGER 178
Query: 215 ------------------------LDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRIL 250
LDS SALQV+ LL M + +T+VL+IHQP +RIL
Sbjct: 179 RRVSIGVELVHDPNVILIDEPTSGLDSASALQVVTLLKDMTIKQGKTIVLTIHQPGFRIL 238
Query: 251 QYISKFLILSRGSVVHYGSLELLEETINNLGYQIPTQLNAIEFAMEIMHPLEDSYSNNNN 310
+ I + ++LS G VV GS+ L + I G+QIP ++N +E+A++I LE + +
Sbjct: 239 EQIDRIVLLSNGMVVQNGSVYSLHQKIKFSGHQIPRRVNVLEYAIDIAGSLEPIRTQSCR 298
Query: 311 FLPSVEDAEQFPDLRCEKVGGVEHQQHAFFLILYEIMVLCSRFWKIIYRTKQLFLARTMQ 370
+ ++ + G + +L E+ +L R K I+RTKQLF R +Q
Sbjct: 299 EISCYGHSKTWKSCYISAGGELHQSDSHSNSVLEEVQILGQRSCKNIFRTKQLFTTRALQ 358
Query: 371 ALVGGFGLGSVYVRV--RKDEAGVAERLGLFAFSLSFLLSSTVEALPIYLQERRVLMKEA 428
A + G LGS+Y+ V +K EA V R G FAF L+FLLSST E LPI+LQ+RR+LM+E
Sbjct: 359 ASIAGLILGSIYLNVGNQKKEAKVL-RTGFFAFILTFLLSSTTEGLPIFLQDRRILMRET 417
Query: 429 SREAYRISSYLIANTIVFLPFLFVVSLLFAIPVYWIVGLNPSIEAFVFFIFVVWLIVLMA 488
SR AYR+ SY++A+T++F+PFL ++S+LFA PVYW+VGL ++ F++F V+W+++LM+
Sbjct: 418 SRRAYRVLSYVLADTLIFIPFLLIISMLFATPVYWLVGLRRELDGFLYFSLVIWIVLLMS 477
Query: 489 SSLVLFLSAISPDFISGNSLICTVLGAFFLFSGYFIPKEYIPKYWIFMYYISLYRYPLDS 548
+S V SA+ P+FI G S+I ++G+FFLFSGYFI K+ IP YW FM+Y+SL++YP +
Sbjct: 478 NSFVACFSALVPNFIMGTSVISGLMGSFFLFSGYFIAKDRIPVYWEFMHYLSLFKYPFEC 537
Query: 549 LLTNEYWSARGECFSWQKYNNVDGDHFSKCLLTGNDVLKSRGLEKDTRWVNVGVMLAFFL 608
L+ NEY RG+ F LK + L++ +W N+G+M +F +
Sbjct: 538 LMINEY---RGDVF-----------------------LKQQDLKESQKWSNLGIMASFIV 571
Query: 609 FYRVLCWIILSRRASKTTT 627
YRVL + IL R +T +
Sbjct: 572 GYRVLGFFILWYRCYRTRS 590
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9ZUT0|AB2G_ARATH ABC transporter G family member 2 OS=Arabidopsis thaliana GN=ABCG2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 308 bits (788), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 200/621 (32%), Positives = 320/621 (51%), Gaps = 95/621 (15%)
Query: 86 ILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKKPAQLR 145
+L +S EAR+ E++AV+G SG+GKS+L+ ++ R+ +D SIT+N ++ Q +
Sbjct: 133 LLNGISGEAREGEMMAVLGASGSGKSTLIDALANRIA-KDSLRGSITLNGEVLESSMQ-K 190
Query: 146 KICGFVAQEDNLLPLLTVKETLMFSANFRL-KGMSHKEKEDRVESLMDELGLTHVAGSFV 204
I +V Q+D L P+LTV+ETLMFSA FRL + +S K+K+ RV++L+D+LGL A + +
Sbjct: 191 VISAYVMQDDLLFPMLTVEETLMFSAEFRLPRSLSKKKKKARVQALIDQLGLRSAAKTVI 250
Query: 205 GDEENRGISG---------------------------LDSTSALQVIELLASMAKAKQRT 237
GDE +RG+SG LDSTSA VI++L +A++
Sbjct: 251 GDEGHRGVSGGERRRVSIGNDIIHDPIILFLDEPTSGLDSTSAYMVIKVLQRIAQSGS-I 309
Query: 238 VVLSIHQPSYRILQYISKFLILSRGSVVHYGSLELLEETINNLGYQIPTQLNAIEFAMEI 297
V++SIHQPSYRI+ + + + LS+G+ V+ GS L + + + IP N EFA+++
Sbjct: 310 VIMSIHQPSYRIMGLLDQLIFLSKGNTVYSGSPTHLPQFFSEFKHPIPENENKTEFALDL 369
Query: 298 MHPLEDSYSNNNNFLPSVE-----DAEQFPDL----------------------RCEKVG 330
+ LE S P VE A+Q P R + V
Sbjct: 370 IRELEYSTEGTK---PLVEFHKQWRAKQAPSYNNNNKRNTNVSSLKEAITASISRGKLVS 426
Query: 331 GVEHQQHAFFLILY---------EIMVLCSRFWKIIYRTKQLFLARTMQALVGGFGLGSV 381
G + + + E++V+ R R +L R +V G L ++
Sbjct: 427 GATNNNSSNLTPSFQTFANPFWIEMIVIGKRAILNSRRQPELLGMRLGAVMVTGIILATM 486
Query: 382 YVRVRKDEAGVAERLGLFAFSLSFLLSSTVEALPIYLQERRVLMKEASREAYRISSYLIA 441
+ + G ERLG FAF++S + EA+P++LQER + M+E + AYR SSY+++
Sbjct: 487 FTNLDNSPKGAQERLGFFAFAMSTTFYTCAEAIPVFLQERYIFMRETAYNAYRRSSYVLS 546
Query: 442 NTIVFLPFLFVVSLLFAIPVYWIVGLNPSIEAFVFFIFVVWLIVLMASSLVLFLSAISPD 501
+I+ +P L V+S FA +W VGL+ F FF F + SS V FLS + P+
Sbjct: 547 QSIISIPALIVLSASFAATTFWAVGLDGGANGFFFFYFTILASFWAGSSFVTFLSGVIPN 606
Query: 502 FISGNSLICTVLGAFFLFSGYFIPKEYIPKYWIFMYYISLYRYPLDSLLTNEYWSARGEC 561
+ G +++ +L F LFSG+FI ++ IP YW++ +YISL +YP + +L NE+ + C
Sbjct: 607 VMLGFTVVVAILAYFLLFSGFFISRDRIPVYWLWFHYISLVKYPYEGVLQNEFQNPT-RC 665
Query: 562 FSW--QKYNNVDGDHF----------------------SKCLLTGNDVLKSRGLEKDTRW 597
F+ Q ++N F C+ TG D+LK +G+ ++W
Sbjct: 666 FARGVQLFDNSPLGEFPNDVKVNLLKSMSGVLGTNVTAETCVTTGIDILKQQGITDISKW 725
Query: 598 VNVGVMLAFFLFYRVLCWIIL 618
+ + +A+ F+RVL + L
Sbjct: 726 NCLWITVAWGFFFRVLFYFTL 746
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9M2V7|AB16G_ARATH ABC transporter G family member 16 OS=Arabidopsis thaliana GN=ABCG16 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 307 bits (786), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 198/625 (31%), Positives = 317/625 (50%), Gaps = 96/625 (15%)
Query: 86 ILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKKPAQLR 145
+L ++S E RD EILAV+G SG+GKS+L+ ++ R+ ++T+N ++ L+
Sbjct: 107 LLDNISGETRDGEILAVLGASGSGKSTLIDALANRIAKGSLKG-TVTLNGEALQS-RMLK 164
Query: 146 KICGFVAQEDNLLPLLTVKETLMFSANFRL-KGMSHKEKEDRVESLMDELGLTHVAGSFV 204
I +V Q+D L P+LTV+ETLMF+A FRL + + +K+ RV++L+D+LG+ + A + +
Sbjct: 165 VISAYVMQDDLLFPMLTVEETLMFAAEFRLPRSLPKSKKKLRVQALIDQLGIRNAAKTII 224
Query: 205 GDEENRGISG---------------------------LDSTSALQVIELLASMAKAKQRT 237
GDE +RGISG LDSTSA V+++L +A++
Sbjct: 225 GDEGHRGISGGERRRVSIGIDIIHDPIVLFLDEPTSGLDSTSAFMVVKVLKRIAESGS-I 283
Query: 238 VVLSIHQPSYRILQYISKFLILSRGSVVHYGSLELLEETINNLGYQIPTQLNAIEFAMEI 297
+++SIHQPS+R+L + + + LSRG V GS L G IP N EFA+++
Sbjct: 284 IIMSIHQPSHRVLSLLDRLIFLSRGHTVFSGSPASLPSFFAGFGNPIPENENQTEFALDL 343
Query: 298 MHPLEDSYSNNNNFLPSVEDAEQF----------------PDLRCEKV------------ 329
+ LE S + + ++ P+L ++
Sbjct: 344 IRELEGSAGGTRGLVEFNKKWQEMKKQSNPQTLTPPASPNPNLTLKEAISASISRGKLVS 403
Query: 330 -----------GGVEHQQHAFFLILY-EIMVLCSRFWKIIYRTKQLFLARTMQALVGGFG 377
GG AF + EI L R R +L R +V GF
Sbjct: 404 GGGGGSSVINHGGGTLAVPAFANPFWIEIKTLTRRSILNSRRQPELLGMRLATVIVTGFI 463
Query: 378 LGSVYVRVRKDEAGVAERLGLFAFSLSFLLSSTVEALPIYLQERRVLMKEASREAYRISS 437
L +V+ R+ GV ERLG FAF++S + + +ALP++LQER + M+E + AYR SS
Sbjct: 464 LATVFWRLDNSPKGVQERLGFFAFAMSTMFYTCADALPVFLQERYIFMRETAYNAYRRSS 523
Query: 438 YLIANTIVFLPFLFVVSLLFAIPVYWIVGLNPSIEAFVFFIFVVWLIVLMASSLVLFLSA 497
Y++++ IV P L +SL FA+ +W VGL + F+F+ ++ SS V FLS
Sbjct: 524 YVLSHAIVTFPSLIFLSLAFAVTTFWAVGLEGGLMGFLFYCLIILASFWSGSSFVTFLSG 583
Query: 498 ISPDFISGNSLICTVLGAFFLFSGYFIPKEYIPKYWIFMYYISLYRYPLDSLLTNEYWSA 557
+ P + G +++ +L F LFSG+FI ++ IP+YWI+ +Y+SL +YP +++L NE+ S
Sbjct: 584 VVPHVMLGYTIVVAILAYFLLFSGFFINRDRIPQYWIWFHYLSLVKYPYEAVLQNEF-SD 642
Query: 558 RGECF--SWQKYNNVDGDHF----------------------SKCLLTGNDVLKSRGLEK 593
ECF Q ++N S CL TG DVLK +G+ +
Sbjct: 643 PTECFVRGVQLFDNSPLGELTYGMKLRLLDSVSRSIGMRISSSTCLTTGADVLKQQGVTQ 702
Query: 594 DTRWVNVGVMLAFFLFYRVLCWIIL 618
++W + + + F +R+L ++ L
Sbjct: 703 LSKWNCLLITVGFGFLFRILFYLCL 727
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|O80946|AB1G_ARATH ABC transporter G family member 1 OS=Arabidopsis thaliana GN=ABCG1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 305 bits (780), Expect = 9e-82, Method: Compositional matrix adjust.
Identities = 198/627 (31%), Positives = 320/627 (51%), Gaps = 98/627 (15%)
Query: 86 ILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKKPAQLR 145
+L ++S E RD EI+AV+G SG+GKS+L+ ++ R+ ++ +N ++ L+
Sbjct: 109 LLNNISGETRDGEIMAVLGASGSGKSTLIDALANRIAKGSLKG-TVKLNGETLQS-RMLK 166
Query: 146 KICGFVAQEDNLLPLLTVKETLMFSANFRL-KGMSHKEKEDRVESLMDELGLTHVAGSFV 204
I +V Q+D L P+LTV+ETLMF+A FRL + + +K+ RV++L+D+LG+ + A + +
Sbjct: 167 VISAYVMQDDLLFPMLTVEETLMFAAEFRLPRSLPKSKKKLRVQALIDQLGIRNAAKTII 226
Query: 205 GDEENRGISG---------------------------LDSTSALQVIELLASMAKAKQRT 237
GDE +RGISG LDSTSA V+++L +A++
Sbjct: 227 GDEGHRGISGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFMVVKVLKRIAQSGS-I 285
Query: 238 VVLSIHQPSYRILQYISKFLILSRGSVVHYGSLELLEETINNLGYQIPTQLNAIEFAMEI 297
V++SIHQPS+R+L + + + LSRG V+ GS L G IP N EFA+++
Sbjct: 286 VIMSIHQPSHRVLGLLDRLIFLSRGHTVYSGSPASLPRFFTEFGSPIPENENRTEFALDL 345
Query: 298 MHPLEDSYSNNNNFL-----------------PSVEDAEQFPDL-----------RCEKV 329
+ LE S + P + +P+L R + V
Sbjct: 346 IRELEGSAGGTRGLIEFNKKWQEMKKQSNRQPPLTPPSSPYPNLTLKEAIAASISRGKLV 405
Query: 330 GGVEHQQH-------------AFFLILY-EIMVLCSRFWKIIYRTKQLFLARTMQALVGG 375
G E H AF ++ EI L R R +LF R ++ G
Sbjct: 406 SGGESVAHGGATTNTTTLAVPAFANPMWIEIKTLSKRSMLNSRRQPELFGIRIASVVITG 465
Query: 376 FGLGSVYVRVRKDEAGVAERLGLFAFSLSFLLSSTVEALPIYLQERRVLMKEASREAYRI 435
F L +V+ R+ GV ERLG FAF++S + + +ALP++LQER + M+E + AYR
Sbjct: 466 FILATVFWRLDNSPKGVQERLGFFAFAMSTMFYTCADALPVFLQERYIFMRETAYNAYRR 525
Query: 436 SSYLIANTIVFLPFLFVVSLLFAIPVYWIVGLNPSIEAFVFFIFVVWLIVLMASSLVLFL 495
SSY++++ IV P L +S+ FA YW VGL+ + +F+ ++ SS V FL
Sbjct: 526 SSYVLSHAIVSFPSLIFLSVAFAATTYWAVGLDGGLTGLLFYCLIILASFWSGSSFVTFL 585
Query: 496 SAISPDFISGNSLICTVLGAFFLFSGYFIPKEYIPKYWIFMYYISLYRYPLDSLLTNEYW 555
S + P + G +++ +L F LFSG+FI + IP YWI+ +Y+SL +YP +++L NE+
Sbjct: 586 SGVVPSVMLGYTIVVAILAYFLLFSGFFINRNRIPDYWIWFHYMSLVKYPYEAVLQNEFS 645
Query: 556 SARGECF--SWQKYNNVDGDHF----------------------SKCLLTGNDVLKSRGL 591
A +CF Q ++N + CL TG+D+L+ +G+
Sbjct: 646 DAT-KCFVRGVQIFDNTPLGELPEVMKLKLLGTVSKSLGVTISSTTCLTTGSDILRQQGV 704
Query: 592 EKDTRWVNVGVMLAFFLFYRVLCWIIL 618
+ ++W + + +AF F+R+L + L
Sbjct: 705 VQLSKWNCLFITVAFGFFFRILFYFTL 731
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9M2V5|AB18G_ARATH ABC transporter G family member 18 OS=Arabidopsis thaliana GN=ABCG18 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 304 bits (778), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 189/613 (30%), Positives = 312/613 (50%), Gaps = 84/613 (13%)
Query: 86 ILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKKPAQLR 145
+L ++ EARD EILAV+G SG GKS+L+ ++GRV + ++T+N ++ + L+
Sbjct: 91 LLDDITGEARDGEILAVLGGSGAGKSTLIDALAGRVAEDSLKG-TVTLNGEKVLQSRLLK 149
Query: 146 KICGFVAQEDNLLPLLTVKETLMFSANFRL-KGMSHKEKEDRVESLMDELGLTHVAGSFV 204
I +V Q+D L P+LTVKETLMF++ FRL + + +K +RVE+L+D+LGL + A + +
Sbjct: 150 VISAYVMQDDLLFPMLTVKETLMFASEFRLPRSLPKSKKMERVETLIDQLGLRNAADTVI 209
Query: 205 GDEENRGISG---------------------------LDSTSALQVIELLASMAKAKQRT 237
GDE +RG+SG LDST+A V+++L +A++
Sbjct: 210 GDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTNAFMVVQVLKRIAQSGS-V 268
Query: 238 VVLSIHQPSYRILQYISKFLILSRGSVVHYGSLELLEETINNLGYQIPTQLNAIEFAMEI 297
V++SIHQPS RI+ + + +ILS G V GS L ++ G IP + N EFA+++
Sbjct: 269 VIMSIHQPSARIIGLLDRLIILSHGKSVFNGSPVSLPSFFSSFGRPIPEKENITEFALDV 328
Query: 298 MHPLEDSYSNNNNFLPSVEDAEQFPDLRCEKVGGVEHQQHAFFLI--------------- 342
+ LE S + + E +Q R V ++ +
Sbjct: 329 IRELEGSSEGTRDLVEFNEKWQQNQTARATTQSRVSLKEAIAASVSRGKLVSGSSGANPI 388
Query: 343 ------------LYEIMVLCSRFWKIIYRTKQLFLARTMQALVGGFGLGSVYVRVRKDEA 390
L E +L R+ K RT +L R +V G L +VY R+
Sbjct: 389 SMETVSSYANPPLAETFILAKRYIKNWIRTPELIGMRIGTVMVTGLLLATVYWRLDNTPR 448
Query: 391 GVAERLGLFAFSLSFLLSSTVEALPIYLQERRVLMKEASREAYRISSYLIANTIVFLPFL 450
G ER+G FAF +S + + +P+++QER + ++E + AYR SSY+I++ +V LP L
Sbjct: 449 GAQERMGFFAFGMSTMFYCCADNIPVFIQERYIFLRETTHNAYRTSSYVISHALVSLPQL 508
Query: 451 FVVSLLFAIPVYWIVGLNPSIEAFVFFIFVVWLIVLMASSLVLFLSAISPDFISGNSLIC 510
+S+ FA +W VGL+ +E+F ++ +++ SS+V F+S + P+ + +
Sbjct: 509 LALSIAFAATTFWTVGLSGGLESFFYYCLIIYAAFWSGSSIVTFISGLIPNVMMSYMVTI 568
Query: 511 TVLGAFFLFSGYFIPKEYIPKYWIFMYYISLYRYPLDSLLTNEYWSARGECFSWQKYNNV 570
L L G++I ++ IP YWI+ +YISL +YP +++L NE+ CF +
Sbjct: 569 AYLSYCLLLGGFYINRDRIPLYWIWFHYISLLKYPYEAVLINEF-DDPSRCFV-KGVQVF 626
Query: 571 DGDHF-------------------------SKCLLTGNDVLKSRGLEKDTRWVNVGVMLA 605
DG S CL TG D+L +G+ + ++W + + LA
Sbjct: 627 DGTLLAEVSHVMKVKLLDTLSGSLGTKITESTCLRTGPDLLMQQGITQLSKWDCLWITLA 686
Query: 606 FFLFYRVLCWIIL 618
+ LF+R+L ++ L
Sbjct: 687 WGLFFRILFYLSL 699
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9M2V6|AB17G_ARATH ABC transporter G family member 17 OS=Arabidopsis thaliana GN=ABCG17 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 301 bits (771), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 190/615 (30%), Positives = 320/615 (52%), Gaps = 78/615 (12%)
Query: 78 HEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQ 137
H P +L ++ EA++ EILA++G SG GKS+L+ ++G++ + ++T+N
Sbjct: 43 HSPAKIKTLLNGITGEAKEGEILAILGASGAGKSTLIDALAGQIAEGSLKG-TVTLNGEA 101
Query: 138 IKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRL-KGMSHKEKEDRVESLMDELGL 196
++ LR I +V QED L P+LTV+ETLMF+A FRL + +S +K +RVE+L+D+LGL
Sbjct: 102 LQSRL-LRVISAYVMQEDLLFPMLTVEETLMFAAEFRLPRSLSKSKKRNRVETLIDQLGL 160
Query: 197 THVAGSFVGDEENRGISG---------------------------LDSTSALQVIELLAS 229
T V + +GDE +RG+SG LDSTSA V+++L
Sbjct: 161 TTVKNTVIGDEGHRGVSGGERRRVSIGTDIIHDPIVLFLDEPTSGLDSTSAFMVVQVLKK 220
Query: 230 MAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGSLELLEETINNLGYQIPTQLN 289
+A++ V++SIHQPS RI++++ + ++LS G +V S L + G IP + N
Sbjct: 221 IARSGS-IVIMSIHQPSGRIMEFLDRVIVLSSGQIVFSDSPATLPLFFSEFGSPIPEKEN 279
Query: 290 AIEFAMEIMHPLEDSYSN-------NNNFLPSVEDAEQFPDLRCEKVGGVEHQQHAFFLI 342
EF ++++ LE S N N+ Q P +G + + +
Sbjct: 280 IAEFTLDLIKDLEGSPEGTRGLVEFNRNWQHRKLRVSQEPHHNSSSLGEAINASISRGKL 339
Query: 343 L---------------YEIMVLCSRFWKIIYRTKQLFLARTMQALVGGFGLGSVYVRVRK 387
+ E ++L R+ RT +L R ++ GF L +VY +V
Sbjct: 340 VSTSYRSIPSYVNPWWVETVILAKRYMINWTRTPELIGTRVFIVMMTGFLLATVYWKVDD 399
Query: 388 DEAGVAERLGLFAFSLSFLLSSTVEALPIYLQERRVLMKEASREAYRISSYLIANTIVFL 447
GV ERL F+F+++ + S + LP ++QER + ++E + AYR SSY+I++++V L
Sbjct: 400 SPRGVQERLSFFSFAMATMFYSCADGLPAFIQERYIFLRETAHNAYRRSSYVISHSLVTL 459
Query: 448 PFLFVVSLLFAIPVYWIVGLNPSIEAFVFFIFVVWLIVLMASSLVLFLSAISPDFISGNS 507
P LF +S+ FA +W VGLN + F++++ +++ S V F+S + P+ +
Sbjct: 460 PHLFALSIGFAATTFWFVGLNGGLAGFIYYLMIIFASFWSGCSFVTFVSGVIPNVMMSYM 519
Query: 508 LICTVLGAFFLFSGYFIPKEYIPKYWIFMYYISLYRYPLDSLLTNEYWSARGECF--SWQ 565
+ L LFSG+++ ++ I YWI+++YISL +YP +++L NE+ CF Q
Sbjct: 520 VTFGYLSYCLLFSGFYVNRDRIHLYWIWIHYISLLKYPYEAVLHNEF-DDPSRCFVRGNQ 578
Query: 566 KYNNVDGDHFSK----------------------CLLTGNDVLKSRGLEKDTRWVNVGVM 603
++N + S+ CL TG+D+LK G+E+ +W + V
Sbjct: 579 VFDNTIMEGVSETTKAKLLETMSGYLGMELTESTCLTTGSDLLKQHGIEQLDKWGCLWVT 638
Query: 604 LAFFLFYRVLCWIIL 618
LA+ F+R+L + L
Sbjct: 639 LAWGFFFRILFYFSL 653
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 627 | ||||||
| 225436642 | 650 | PREDICTED: ABC transporter G family memb | 0.974 | 0.94 | 0.694 | 0.0 | |
| 147840659 | 650 | hypothetical protein VITISV_020445 [Viti | 0.974 | 0.94 | 0.694 | 0.0 | |
| 255580155 | 659 | ATP-binding cassette transporter, putati | 0.982 | 0.934 | 0.684 | 0.0 | |
| 356577612 | 656 | PREDICTED: ABC transporter G family memb | 0.976 | 0.932 | 0.680 | 0.0 | |
| 296083854 | 604 | unnamed protein product [Vitis vinifera] | 0.905 | 0.940 | 0.664 | 0.0 | |
| 356521676 | 655 | PREDICTED: ABC transporter G family memb | 0.976 | 0.934 | 0.684 | 0.0 | |
| 224103957 | 566 | white-brown-complex ABC transporter fami | 0.848 | 0.939 | 0.736 | 0.0 | |
| 357478461 | 643 | ABC transporter G family member [Medicag | 0.956 | 0.933 | 0.651 | 0.0 | |
| 449444869 | 651 | PREDICTED: ABC transporter G family memb | 0.958 | 0.923 | 0.605 | 0.0 | |
| 15239738 | 624 | ABC transporter G family member 23 [Arab | 0.940 | 0.945 | 0.608 | 0.0 |
| >gi|225436642|ref|XP_002276041.1| PREDICTED: ABC transporter G family member 23 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 895 bits (2313), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 461/664 (69%), Positives = 529/664 (79%), Gaps = 53/664 (7%)
Query: 1 MGSCFQQPRPSIEDDSAVLFSTSNSPEEYSTSPSSSFYQPTPSPSLPPQRLKTTCKVTVR 60
M +CFQQP +EDDS VLFS S+S E STSPSSSFY P + KTT ++TV+
Sbjct: 1 MAACFQQP-AQLEDDSTVLFSNSDS-HEGSTSPSSSFYHSPPHD----HQSKTTYRLTVK 54
Query: 61 NLSYAIQPNTSI---LSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRII 117
LS+ I P S+ +PK P++ILK VSF A+ SEILA+VGPSGTGKS+LLRII
Sbjct: 55 TLSHTIYPVQSMPISFCRPWKKPK-PINILKGVSFTAKSSEILAIVGPSGTGKSTLLRII 113
Query: 118 SGRVRDQDFDPRSITVNCHQIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKG 177
SGRV++++FDP+SI +N H I PAQLRKICGFVAQEDNLLPLLTVKETLMFSA FRL+
Sbjct: 114 SGRVKNEEFDPKSILLNDHPITSPAQLRKICGFVAQEDNLLPLLTVKETLMFSAKFRLRE 173
Query: 178 MSHKEKEDRVESLMDELGLTHVAGSFVGDEENRGISG----------------------- 214
MS KEKE+RV+SLM ELGL HVA SFVGDEENRGISG
Sbjct: 174 MSGKEKEERVDSLMQELGLVHVADSFVGDEENRGISGGERKRVSIGVDMIHDPPILLLDE 233
Query: 215 ----LDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGSL 270
LDSTSALQVIELL+SMA+AK RT+VLSIHQPSYR+LQYISKFLILSRGSVVH GSL
Sbjct: 234 PTSGLDSTSALQVIELLSSMARAKHRTIVLSIHQPSYRLLQYISKFLILSRGSVVHIGSL 293
Query: 271 ELLEETINNLGYQIPTQLNAIEFAMEIMHPLEDSYSNNNNFLPSVEDAE--QFPDLRCEK 328
ELLEE I+ +G++IP QLN +EFAMEI++ LEDS N N++ +ED + + E+
Sbjct: 294 ELLEEKIDKMGFKIPLQLNPLEFAMEIIYSLEDS--NPNSYHSDIEDKKPSSYSAWPEEE 351
Query: 329 VGGVEHQQHA------FFLILYEIMVLCSRFWKIIYRTKQLFLARTMQALVGGFGLGSVY 382
VG ++ Q + +EIM LCSRFWKIIYRTKQLFLARTMQALVGGFGLGSVY
Sbjct: 352 VGRIQKQNDGSQMGNHYLWSFFEIMFLCSRFWKIIYRTKQLFLARTMQALVGGFGLGSVY 411
Query: 383 VRVRKDEAGVAERLGLFAFSLSFLLSSTVEALPIYLQERRVLMKEASREAYRISSYLIAN 442
++VRKDE G+AERLGLFAFSLSFLLSSTVEALPIYLQERRVLM+E+SR AYRISSY+IAN
Sbjct: 412 IKVRKDEGGIAERLGLFAFSLSFLLSSTVEALPIYLQERRVLMRESSRGAYRISSYMIAN 471
Query: 443 TIVFLPFLFVVSLLFAIPVYWIVGLNPSIEAFVFFIFVVWLIVLMASSLVLFLSAISPDF 502
TI+FLPFLF V++LFA+PVYW+VGLNPSI AF FF FVVWLIV+MASSLVLFLSA+SPDF
Sbjct: 472 TIIFLPFLFTVAILFAVPVYWLVGLNPSIAAFTFFTFVVWLIVMMASSLVLFLSAVSPDF 531
Query: 503 ISGNSLICTVLGAFFLFSGYFIPKEYIPKYWIFMYYISLYRYPLDSLLTNEYWSARGECF 562
ISGNSLICTVLGAFFLFSGYFIPKE IP+YW+FMYY+SLYRYPLDSLL NEYWS +GECF
Sbjct: 532 ISGNSLICTVLGAFFLFSGYFIPKESIPRYWLFMYYVSLYRYPLDSLLINEYWSMKGECF 591
Query: 563 SWQKYNNVDGDHFSKCLLTGNDVLKSRGLEKDTRWVNVGVMLAFFLFYRVLCWIILSRRA 622
SWQ DH SKCL+TGNDVLK RGL+KDTRW+NVG+M FF+FYR+LCWIILSRRA
Sbjct: 592 SWQVQ-----DH-SKCLITGNDVLKGRGLDKDTRWMNVGIMFGFFIFYRLLCWIILSRRA 645
Query: 623 SKTT 626
SKTT
Sbjct: 646 SKTT 649
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147840659|emb|CAN68542.1| hypothetical protein VITISV_020445 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 894 bits (2311), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 461/664 (69%), Positives = 528/664 (79%), Gaps = 53/664 (7%)
Query: 1 MGSCFQQPRPSIEDDSAVLFSTSNSPEEYSTSPSSSFYQPTPSPSLPPQRLKTTCKVTVR 60
M +CFQQP +EDDS VLFS S+S E STSPSSSFY P + KTT + TV+
Sbjct: 1 MAACFQQP-AQLEDDSTVLFSNSDS-HEGSTSPSSSFYHSPPHD----HQSKTTYRXTVK 54
Query: 61 NLSYAIQPNTSI---LSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRII 117
LS+ I P S+ +PK P++ILK VSF A+ SEILA+VGPSGTGKS+LLRII
Sbjct: 55 TLSHTIYPVQSMPISFCRPWKKPK-PINILKGVSFTAKSSEILAIVGPSGTGKSTLLRII 113
Query: 118 SGRVRDQDFDPRSITVNCHQIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKG 177
SGRV++++FDP+SI +N H I PAQLRKICGFVAQEDNLLPLLTVKETLMFSA FRL+
Sbjct: 114 SGRVKNEEFDPKSILLNDHPITSPAQLRKICGFVAQEDNLLPLLTVKETLMFSAKFRLRE 173
Query: 178 MSHKEKEDRVESLMDELGLTHVAGSFVGDEENRGISG----------------------- 214
MS KEKE+RV+SLM ELGL HVA SFVGDEENRGISG
Sbjct: 174 MSGKEKEERVDSLMQELGLVHVADSFVGDEENRGISGGERKRVSIGVDMIHDPPILLLDE 233
Query: 215 ----LDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGSL 270
LDSTSALQVIELL+SMA+AK RT+VLSIHQPSYR+LQYISKFLILSRGSVVH GSL
Sbjct: 234 PTSGLDSTSALQVIELLSSMARAKHRTIVLSIHQPSYRLLQYISKFLILSRGSVVHIGSL 293
Query: 271 ELLEETINNLGYQIPTQLNAIEFAMEIMHPLEDSYSNNNNFLPSVEDAE--QFPDLRCEK 328
ELLEE I+ +G++IP QLN +EFAMEI++ LEDS N N++ +ED + + E+
Sbjct: 294 ELLEEKIDKMGFKIPLQLNPLEFAMEIIYSLEDS--NPNSYHSDIEDKKPSSYSAWPEEE 351
Query: 329 VGGVEHQQHA------FFLILYEIMVLCSRFWKIIYRTKQLFLARTMQALVGGFGLGSVY 382
VG ++ Q + +EIM LCSRFWKIIYRTKQLFLARTMQALVGGFGLGSVY
Sbjct: 352 VGRIQKQNDGSQMGNHYLWSFFEIMFLCSRFWKIIYRTKQLFLARTMQALVGGFGLGSVY 411
Query: 383 VRVRKDEAGVAERLGLFAFSLSFLLSSTVEALPIYLQERRVLMKEASREAYRISSYLIAN 442
++VRKDE G+AERLGLFAFSLSFLLSSTVEALPIYLQERRVLM+E+SR AYRISSY+IAN
Sbjct: 412 IKVRKDEGGIAERLGLFAFSLSFLLSSTVEALPIYLQERRVLMRESSRGAYRISSYMIAN 471
Query: 443 TIVFLPFLFVVSLLFAIPVYWIVGLNPSIEAFVFFIFVVWLIVLMASSLVLFLSAISPDF 502
TI+FLPFLF V++LFA+PVYW+VGLNPSI AF FF FVVWLIV+MASSLVLFLSA+SPDF
Sbjct: 472 TIIFLPFLFTVAILFAVPVYWLVGLNPSIAAFTFFTFVVWLIVMMASSLVLFLSAVSPDF 531
Query: 503 ISGNSLICTVLGAFFLFSGYFIPKEYIPKYWIFMYYISLYRYPLDSLLTNEYWSARGECF 562
ISGNSLICTVLGAFFLFSGYFIPKE IP+YW+FMYY+SLYRYPLDSLL NEYWS +GECF
Sbjct: 532 ISGNSLICTVLGAFFLFSGYFIPKESIPRYWLFMYYVSLYRYPLDSLLINEYWSMKGECF 591
Query: 563 SWQKYNNVDGDHFSKCLLTGNDVLKSRGLEKDTRWVNVGVMLAFFLFYRVLCWIILSRRA 622
SWQ DH SKCL+TGNDVLK RGL+KDTRW+NVG+M FF+FYR+LCWIILSRRA
Sbjct: 592 SWQVQ-----DH-SKCLITGNDVLKGRGLDKDTRWMNVGIMFGFFIFYRLLCWIILSRRA 645
Query: 623 SKTT 626
SKTT
Sbjct: 646 SKTT 649
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255580155|ref|XP_002530909.1| ATP-binding cassette transporter, putative [Ricinus communis] gi|223529531|gb|EEF31485.1| ATP-binding cassette transporter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 862 bits (2228), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 457/668 (68%), Positives = 525/668 (78%), Gaps = 52/668 (7%)
Query: 1 MGSCFQQPRPSIEDDSAVLFST--SNSPEEYSTSPSSSFYQPTPSPSLPPQRL----KTT 54
M SCF +PSIE+DSAVL ST S+SPEE ++S SSS + P P PP + +
Sbjct: 1 MASCFN--KPSIEEDSAVLCSTTTSDSPEENTSSSSSSHHLSPPPPPPPPSIPSHYSQIS 58
Query: 55 CKVTVRNLSYAIQPNTSILS---HLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKS 111
K+TV +LSY I P+ SI + HLL +PK ++IL+SV+F+AR SEILA+VGPSGTGKS
Sbjct: 59 YKLTVTDLSYTISPSESIAASFCHLLQKPK-SINILQSVTFQARSSEILAIVGPSGTGKS 117
Query: 112 SLLRIISGRVRDQDFDPRSITVNCHQIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSA 171
SLLRIISGRVRD+DF+P+SI++N I P+QLRKICGF+AQEDNLLPLLTVKETLM+SA
Sbjct: 118 SLLRIISGRVRDKDFNPKSISINGRYISSPSQLRKICGFIAQEDNLLPLLTVKETLMYSA 177
Query: 172 NFRLKGMSHKEKEDRVESLMDELGLTHVAGSFVGDEENRGISG----------------- 214
FRL MS K+KE+RVESLM ELGL+HVA SFVGDEENRGISG
Sbjct: 178 KFRLTEMSAKDKEERVESLMIELGLSHVADSFVGDEENRGISGGERKRVSIGVDMIHDPA 237
Query: 215 ----------LDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSV 264
LDSTSALQVIELL+SMAKA+ RTVVLSIHQPSYRIL+YI F+ILS GSV
Sbjct: 238 ILLLDEPTSGLDSTSALQVIELLSSMAKARSRTVVLSIHQPSYRILRYIHNFVILSHGSV 297
Query: 265 VHYGSLELLEETINNLGYQIPTQLNAIEFAMEIMHPLEDSYSNN------NNFLPSVEDA 318
VH G+LE LEETI LG+QIP QL+A+EFAMEIMH LE S S NN P
Sbjct: 298 VHNGNLESLEETITKLGFQIPLQLHALEFAMEIMHTLEASKSKTYTSPLENNHEPHSYSI 357
Query: 319 EQFPDLRCEKVGGVEHQQHAFFLILYEIMVLCSRFWKIIYRTKQLFLARTMQALVGGFGL 378
+ G ++ + + F L EIM LCSRFWKIIYRTKQLFLARTMQA+VGGFGL
Sbjct: 358 WHDESIGQSNEGMIKKKGNYDFFNLSEIMYLCSRFWKIIYRTKQLFLARTMQAVVGGFGL 417
Query: 379 GSVYVRVRKDEAGVAERLGLFAFSLSFLLSSTVEALPIYLQERRVLMKEASREAYRISSY 438
GSVY++VRKDE G+ ERLGLFAFSLSFLLSSTVEALPIYLQER+VLMKEASR AY+ISSY
Sbjct: 418 GSVYIKVRKDEGGITERLGLFAFSLSFLLSSTVEALPIYLQERKVLMKEASRGAYKISSY 477
Query: 439 LIANTIVFLPFLFVVSLLFAIPVYWIVGLNPSIEAFVFFIFVVWLIVLMASSLVLFLSAI 498
+IANTIVFLPFLF V++LF++PVYW+VGLNPS AF+FF FVVWLIVLMASSLVLFLSA
Sbjct: 478 MIANTIVFLPFLFAVAILFSVPVYWLVGLNPSASAFIFFTFVVWLIVLMASSLVLFLSAA 537
Query: 499 SPDFISGNSLICTVLGAFFLFSGYFIPKEYIPKYWIFMYYISLYRYPLDSLLTNEYWSAR 558
SPDFISGNSLICTVLGAFFLFSGYFIPKE IPKYWIFMYY+SLYRYPLD L+TNEYWS R
Sbjct: 538 SPDFISGNSLICTVLGAFFLFSGYFIPKENIPKYWIFMYYVSLYRYPLDCLVTNEYWSMR 597
Query: 559 GECFSWQKYNNVDGDHFSKCLLTGNDVLKSRGLEKDTRWVNVGVMLAFFLFYRVLCWIIL 618
ECFSWQ +GD +CL+TGNDVLKSRGL+KD+RW NVG+ML FF+FYR+LCW+IL
Sbjct: 598 SECFSWQ-----NGD--DQCLVTGNDVLKSRGLDKDSRWSNVGIMLGFFVFYRLLCWVIL 650
Query: 619 SRRASKTT 626
+RRASKTT
Sbjct: 651 ARRASKTT 658
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356577612|ref|XP_003556918.1| PREDICTED: ABC transporter G family member 23-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 844 bits (2181), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 455/669 (68%), Positives = 526/669 (78%), Gaps = 57/669 (8%)
Query: 1 MGSCFQQPR-PSIEDDSAVLFSTSNSPEEYSTSPSSSFYQPTPSPSLPPQRLKTTCKVTV 59
M +C PR S EDDS +L+STSNSPEE ++ SSSFY + +T K++V
Sbjct: 1 MAACLNPPRLSSTEDDSVILYSTSNSPEESNSPSSSSFYHSP---PPSLYQFRTENKLSV 57
Query: 60 RNLSYAIQPNTSI---LSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRI 116
RNL Y + P+ + HL +PK P++ILKSVSF AR SEI+AVVGPSGTGKS+LLRI
Sbjct: 58 RNLCYTLHPHKTTPFSFCHLTQKPK-PVNILKSVSFIARSSEIVAVVGPSGTGKSTLLRI 116
Query: 117 ISGRVRDQDFDPRSITVNCHQIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLK 176
I+GRV+D+ F+P+S+++N + P QLRKICGFVAQEDNLLP+LTVKETL+FSA FRLK
Sbjct: 117 IAGRVKDEGFNPKSVSINDQPMTTPVQLRKICGFVAQEDNLLPMLTVKETLLFSAKFRLK 176
Query: 177 GMSHKEKEDRVESLMDELGLTHVAGSFVGDEENRGISG---------------------- 214
M+ K++E RVESL+ ELGL HVA SFVGDEENRGISG
Sbjct: 177 EMTPKDRELRVESLLQELGLFHVADSFVGDEENRGISGGERKRVSIGVDMIHNPPILLLD 236
Query: 215 -----LDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGS 269
LDSTSALQVIELL+S+ KAKQRTVVLSIHQPSYRILQYISKFLILS GSVVH GS
Sbjct: 237 EPTSGLDSTSALQVIELLSSIVKAKQRTVVLSIHQPSYRILQYISKFLILSHGSVVHNGS 296
Query: 270 LELLEETINNLGYQIPTQLNAIEFAMEIMHPLEDSYSNNNNFLPSVEDAEQFPDL----- 324
LE LEETI+ LG+QIPTQLNA+EF+MEI+ LEDS S + S+E+ E P+L
Sbjct: 297 LEQLEETISKLGFQIPTQLNALEFSMEIIRGLEDSSSKYDTC--SIEEMEPIPNLMWPEE 354
Query: 325 -RCEKVGGVEHQQHA------FFLILYEIMVLCSRFWKIIYRTKQLFLARTMQALVGGFG 377
CE V V+ Q + F+ L EI+ LCSRFWKIIYRTKQLFLARTMQA+VGGFG
Sbjct: 355 ENCE-VQIVQSQCNKGSFGSLFYANLIEILFLCSRFWKIIYRTKQLFLARTMQAIVGGFG 413
Query: 378 LGSVYVRVRKDEAGVAERLGLFAFSLSFLLSSTVEALPIYLQERRVLMKEASREAYRISS 437
LGSVY+++R+DE GVAERLGLFAFSLSFLLSSTVEALPIYLQER VLMKEASR AYRISS
Sbjct: 414 LGSVYIKIRRDEGGVAERLGLFAFSLSFLLSSTVEALPIYLQERSVLMKEASRGAYRISS 473
Query: 438 YLIANTIVFLPFLFVVSLLFAIPVYWIVGLNPSIEAFVFFIFVVWLIVLMASSLVLFLSA 497
Y+IANT VFLPFLFVVS+LFA+PVYW+VGLNPS+ AF FF FVVWLIVLMASSLVLFLSA
Sbjct: 474 YMIANTFVFLPFLFVVSILFAVPVYWLVGLNPSLSAFTFFTFVVWLIVLMASSLVLFLSA 533
Query: 498 ISPDFISGNSLICTVLGAFFLFSGYFIPKEYIPKYWIFMYYISLYRYPLDSLLTNEYWSA 557
+SPDFISGNSLICTVLGAFFLFSGYFIPKE IPKYWIFMYY+SLYRYPLD+LLTNEYW+
Sbjct: 534 VSPDFISGNSLICTVLGAFFLFSGYFIPKESIPKYWIFMYYVSLYRYPLDALLTNEYWNV 593
Query: 558 RGECFSWQKYNNVDGDHFSKCLLTGNDVLKSRGLEKDTRWVNVGVMLAFFLFYRVLCWII 617
R ECFS Q ++G S+CL+TG DVLKSRGLE+D RW+NVG+ML FF+ YRVLCWII
Sbjct: 594 RSECFSHQ----IEG---SQCLITGFDVLKSRGLERDNRWMNVGIMLGFFVLYRVLCWII 646
Query: 618 LSRRASKTT 626
L+R+ASKTT
Sbjct: 647 LARKASKTT 655
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296083854|emb|CBI24242.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 833 bits (2152), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 439/661 (66%), Positives = 502/661 (75%), Gaps = 93/661 (14%)
Query: 1 MGSCFQQPRPSIEDDSAVLFSTSNSPEEYSTSPSSSFYQPTPSPSLPPQRLKTTCKVTVR 60
M +CFQQP +EDDS VLFS S+S E STSPSSSFY P + KTT ++TV+
Sbjct: 1 MAACFQQP-AQLEDDSTVLFSNSDS-HEGSTSPSSSFYHSPPHD----HQSKTTYRLTVK 54
Query: 61 NLSYAIQPNTSI---LSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRII 117
LS+ I P S+ +PK P++ILK VSF A+ SEILA+VGPSGTGKS+LLRII
Sbjct: 55 TLSHTIYPVQSMPISFCRPWKKPK-PINILKGVSFTAKSSEILAIVGPSGTGKSTLLRII 113
Query: 118 SGRVRDQDFDPRSITVNCHQIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKG 177
SGRV++++FDP+SI +N H I PAQLRKICGFVAQEDNLLPLLTVKETLMFSA FRL+
Sbjct: 114 SGRVKNEEFDPKSILLNDHPITSPAQLRKICGFVAQEDNLLPLLTVKETLMFSAKFRLRE 173
Query: 178 MSHKEKEDRVESLMDELGLTHVAGSFVGDEENRGISG----------------------- 214
MS KEKE+RV+SLM ELGL HVA SFVGDEENRGISG
Sbjct: 174 MSGKEKEERVDSLMQELGLVHVADSFVGDEENRGISGGERKRVSIGVDMIHDPPILLLDE 233
Query: 215 ----LDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGSL 270
LDSTSALQVIELL+SMA+AK RT+VLSIHQPSYR+LQYISKFLILSRGSVVH GSL
Sbjct: 234 PTSGLDSTSALQVIELLSSMARAKHRTIVLSIHQPSYRLLQYISKFLILSRGSVVHIGSL 293
Query: 271 ELLEETINNLGYQIPTQLNAIEFAMEIMHPLEDSYSNNNNFLPSVEDAE-----QFPDLR 325
ELLEE I+ +G++IP QLN +EFAMEI++ LEDS N N++ +ED + +P+
Sbjct: 294 ELLEEKIDKMGFKIPLQLNPLEFAMEIIYSLEDS--NPNSYHSDIEDKKPSSYSAWPE-- 349
Query: 326 CEKVGGVEHQQHAFFLILYEIMVLCSRFWKIIYRTKQLFLARTMQALVGGFGLGSVYVRV 385
EIM LCSRFWKIIYRTKQLFLARTMQALVGGFGLGSVY++V
Sbjct: 350 ------------------EEIMFLCSRFWKIIYRTKQLFLARTMQALVGGFGLGSVYIKV 391
Query: 386 RKDEAGVAERLGLFAFSLSFLLSSTVEALPIYLQERRVLMKEASREAYRISSYLIANTIV 445
RKDE G+AERLGLFAFSLSFLLSSTVEALPIYLQERRVLM+E+SR AYRISSY+IANTI+
Sbjct: 392 RKDEGGIAERLGLFAFSLSFLLSSTVEALPIYLQERRVLMRESSRGAYRISSYMIANTII 451
Query: 446 FLPFLFVVSLLFAIPVYWIVGLNPSIEAFVFFIFVVWLIVLMASSLVLFLSAISPDFISG 505
FLPFLF V++LFA+PVYW+VGLNPSI AF FF FVVWLIV+MASSLVLFLSA+SPDFISG
Sbjct: 452 FLPFLFTVAILFAVPVYWLVGLNPSIAAFTFFTFVVWLIVMMASSLVLFLSAVSPDFISG 511
Query: 506 NSLICTVLGAFFLFSGYFIPKEYIPKYWIFMYYISLYRYPLDSLLTNEYWSARGECFSWQ 565
NSLICTVLGAFFLFSGYFIPKE IP+YW+FMYY+SLYRYPLDSLL NEYWS +GE W
Sbjct: 512 NSLICTVLGAFFLFSGYFIPKESIPRYWLFMYYVSLYRYPLDSLLINEYWSMKGE---W- 567
Query: 566 KYNNVDGDHFSKCLLTGNDVLKSRGLEKDTRWVNVGVMLAFFLFYRVLCWIILSRRASKT 625
L+KDTRW+NVG+M FF+FYR+LCWIILSRRASKT
Sbjct: 568 -------------------------LDKDTRWMNVGIMFGFFIFYRLLCWIILSRRASKT 602
Query: 626 T 626
T
Sbjct: 603 T 603
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356521676|ref|XP_003529479.1| PREDICTED: ABC transporter G family member 23-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 825 bits (2132), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 457/668 (68%), Positives = 526/668 (78%), Gaps = 56/668 (8%)
Query: 1 MGSCFQQPR-PSIEDDSAVLFSTSNSPEEYSTSPSSSFYQPTPSPSLPPQRLKTTCKVTV 59
M +C + PR S EDDS +LFSTSNSPEE ++ SSSFY SP + +T K++V
Sbjct: 1 MAACLKPPRLSSTEDDSLILFSTSNSPEESNSP-SSSFYH---SPPTSLHQFRTANKLSV 56
Query: 60 RNLSYAIQPN-TSILS--HLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRI 116
RNLSY + P+ T+ LS HL PK P++ILKSVSF AR SE++AVVGPSGTGKS+LLRI
Sbjct: 57 RNLSYTLLPHKTTPLSFFHLTQNPK-PVNILKSVSFVARSSEVVAVVGPSGTGKSTLLRI 115
Query: 117 ISGRVRDQDFDPRSITVNCHQIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLK 176
ISGRV+D+DFDP+S+++N + PAQLRK CGFVAQ DNLLP+LTVKETLM+SA FRLK
Sbjct: 116 ISGRVKDEDFDPKSVSINDQPMTSPAQLRKTCGFVAQVDNLLPMLTVKETLMYSAKFRLK 175
Query: 177 GMSHKEKEDRVESLMDELGLTHVAGSFVGDEENRGISG---------------------- 214
M+ K++E RVESL+ ELGL HVA SFVGDEENRGISG
Sbjct: 176 EMTPKDRERRVESLLQELGLFHVANSFVGDEENRGISGGERKRVSIGVDMIHNPPILLLD 235
Query: 215 -----LDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGS 269
LDSTSALQVIELL+S+AKAKQRTVVLSIHQPSYRILQYISKFLILS GSVVH GS
Sbjct: 236 EPTSGLDSTSALQVIELLSSIAKAKQRTVVLSIHQPSYRILQYISKFLILSHGSVVHNGS 295
Query: 270 LELLEETINNLGYQIPTQLNAIEFAMEIMHPLEDSYSNNNNFLPSVEDAEQFPDLRC--E 327
LE LEETI+ LG+QIPTQLNA+EF+MEI+ LE S S + ++E+ E FP+L E
Sbjct: 296 LEQLEETISKLGFQIPTQLNALEFSMEIIRGLEGSDSKYDTC--TIEEKEPFPNLMWPEE 353
Query: 328 KVGGV---------EHQQHAFFLILYEIMVLCSRFWKIIYRTKQLFLARTMQALVGGFGL 378
+ GV E + L EI+ LCSRFWKIIYRTKQLFLARTMQALVGGFGL
Sbjct: 354 ENCGVQILRSQCNKESYGSLCYANLIEILFLCSRFWKIIYRTKQLFLARTMQALVGGFGL 413
Query: 379 GSVYVRVRKDEAGVAERLGLFAFSLSFLLSSTVEALPIYLQERRVLMKEASREAYRISSY 438
GSVY+++R+DE G AERLGLFAFSLSFLLSSTVEAL IYLQER VLMKEASR AYRISSY
Sbjct: 414 GSVYIKIRRDEGGAAERLGLFAFSLSFLLSSTVEALSIYLQERIVLMKEASRGAYRISSY 473
Query: 439 LIANTIVFLPFLFVVSLLFAIPVYWIVGLNPSIEAFVFFIFVVWLIVLMASSLVLFLSAI 498
+IANT VFL FLFVVS+LFA+PVYW+VGLNPS+ AF FF VVWLIVLMASSLVLFLSA+
Sbjct: 474 MIANTFVFLLFLFVVSILFAVPVYWLVGLNPSLSAFTFFTLVVWLIVLMASSLVLFLSAV 533
Query: 499 SPDFISGNSLICTVLGAFFLFSGYFIPKEYIPKYWIFMYYISLYRYPLDSLLTNEYWSAR 558
SPDFISGNSLICTVLGAFFLFSGYFIPKE IPKYW+FMYY+SLYRYPLD+LLTNEYW+ R
Sbjct: 534 SPDFISGNSLICTVLGAFFLFSGYFIPKESIPKYWLFMYYVSLYRYPLDALLTNEYWNVR 593
Query: 559 GECFSWQKYNNVDGDHFSKCLLTGNDVLKSRGLEKDTRWVNVGVMLAFFLFYRVLCWIIL 618
ECFS Q ++G S+CL+TG DVLKSRGLE+D RW+NVG+ML FF+FYRVLCWIIL
Sbjct: 594 NECFSHQ----IEG---SQCLITGFDVLKSRGLERDNRWMNVGIMLGFFVFYRVLCWIIL 646
Query: 619 SRRASKTT 626
+R+ SKTT
Sbjct: 647 ARKVSKTT 654
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224103957|ref|XP_002313260.1| white-brown-complex ABC transporter family [Populus trichocarpa] gi|222849668|gb|EEE87215.1| white-brown-complex ABC transporter family [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 816 bits (2107), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 423/574 (73%), Positives = 470/574 (81%), Gaps = 42/574 (7%)
Query: 85 HILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKKPAQL 144
+ILKSVSF+AR SEILAVVGPSGTGKSSLLRIISGRV+D+DFDP+S+ +N + AQL
Sbjct: 1 NILKSVSFDARGSEILAVVGPSGTGKSSLLRIISGRVKDKDFDPKSVLINGRCMASTAQL 60
Query: 145 RKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAGSFV 204
RKICGFV QEDNLLPLLTVKETLMFSA FRLK S KE+E+RVESLM ELGL HVA SFV
Sbjct: 61 RKICGFVTQEDNLLPLLTVKETLMFSAKFRLKEKSSKEREERVESLMRELGLFHVANSFV 120
Query: 205 GDEENRGISG---------------------------LDSTSALQVIELLASMAKAKQRT 237
GDEENRGISG LDSTSALQVIELL+SMAKAKQRT
Sbjct: 121 GDEENRGISGGERKRVSIGVDMIHDPPILLLDEPTSGLDSTSALQVIELLSSMAKAKQRT 180
Query: 238 VVLSIHQPSYRILQYISKFLILSRGSVVHYGSLELLEETINNLGYQIPTQLNAIEFAMEI 297
VVLSIHQPSYRILQYI FLILSRGSVVH GSLE LEETI LG+QIP QLNA+EFAMEI
Sbjct: 181 VVLSIHQPSYRILQYIPNFLILSRGSVVHNGSLESLEETITKLGFQIPLQLNALEFAMEI 240
Query: 298 MHPLEDSYSNNNNFLPSVEDAE-------QFPDLRCEKVGGVEHQQHAFFLILYEIMVLC 350
++ LED+ S ++P++E+ Q ++ ++ ++ F L EI+ LC
Sbjct: 241 INTLEDAKSKM--YMPALENEPYSNSIWPQEEIVQIQQGSDTKYSGFCSFFNLSEIIFLC 298
Query: 351 SRFWKIIYRTKQLFLARTMQALVGGFGLGSVYVRVRKDEAGVAERLGLFAFSLSFLLSST 410
SRFWK+IYRTKQLFLARTMQA+VGGFGL SVY++VRKDE GVAERLGLFAFSLSFLLSST
Sbjct: 299 SRFWKVIYRTKQLFLARTMQAIVGGFGLASVYIKVRKDEGGVAERLGLFAFSLSFLLSST 358
Query: 411 VEALPIYLQERRVLMKEASREAYRISSYLIANTIVFLPFLFVVSLLFAIPVYWIVGLNPS 470
VEALPIYLQERRVLMKE+SR AY ISSY+IANTIVFLPFLF V++LF+IPVYWIVGLNPS
Sbjct: 359 VEALPIYLQERRVLMKESSRGAYNISSYMIANTIVFLPFLFAVAMLFSIPVYWIVGLNPS 418
Query: 471 IEAFVFFIFVVWLIVLMASSLVLFLSAISPDFISGNSLICTVLGAFFLFSGYFIPKEYIP 530
I AF FF+FVVWLIVLMASSLVLFLSA+SPDFISGNSLICTVLGAFFLFSGYFIPKE IP
Sbjct: 419 IAAFAFFVFVVWLIVLMASSLVLFLSAVSPDFISGNSLICTVLGAFFLFSGYFIPKENIP 478
Query: 531 KYWIFMYYISLYRYPLDSLLTNEYWSARGECFSWQKYNNVDGDHFSKCLLTGNDVLKSRG 590
KYW+FMYY+SLYRYPLDSLLTNEYWS R ECFSWQ G S C+LTGNDVLKSRG
Sbjct: 479 KYWLFMYYVSLYRYPLDSLLTNEYWSVRNECFSWQ------GQDHSTCVLTGNDVLKSRG 532
Query: 591 LEKDTRWVNVGVMLAFFLFYRVLCWIILSRRASK 624
L+KDTRW+NVG+M FF+FYRVLCWIIL+RRASK
Sbjct: 533 LDKDTRWINVGIMFGFFVFYRVLCWIILARRASK 566
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357478461|ref|XP_003609516.1| ABC transporter G family member [Medicago truncatula] gi|355510571|gb|AES91713.1| ABC transporter G family member [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 815 bits (2106), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 435/668 (65%), Positives = 508/668 (76%), Gaps = 68/668 (10%)
Query: 1 MGSCFQQPRPSIEDDSAVLFSTSNSPEEYSTSPSSSFYQPTPSPSLPPQRLKTTCKVTVR 60
M SC + P+ S EDDS +LFSTSNS S+S T+ K+++
Sbjct: 1 MASCLK-PQSSNEDDSVILFSTSNSSISPSSSSFHH------------SPPPTSYKLSIN 47
Query: 61 NLSYAIQPNTSI---LSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRII 117
NL+Y + P +I L +P P++ILKSVSF AR SEI+AVVGPSGTGKS+LLRII
Sbjct: 48 NLTYTLHPYKTIPFSFKSLTQKPH-PVNILKSVSFVARTSEIVAVVGPSGTGKSTLLRII 106
Query: 118 SGRVRDQDFDPRSITVNCHQIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKG 177
+GR++D+DF+P++I++N H + P+QLRKICGFV+QEDNLLPLLTVKETL+F A FRLK
Sbjct: 107 AGRIKDKDFNPKTISINDHPMSTPSQLRKICGFVSQEDNLLPLLTVKETLLFGAKFRLKE 166
Query: 178 MSHKEKEDRVESLMDELGLTHVAGSFVGDEENRGISG----------------------- 214
M+ KE+E RVE+LM ELGL HVA SFVGD+ENRG+SG
Sbjct: 167 MTPKERELRVENLMQELGLFHVAHSFVGDDENRGVSGGERKRVSIGVDMIHNPPILVLDE 226
Query: 215 ----LDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGSL 270
LDSTSAL VIELL+SM K+KQR V+LSIHQPSYRILQYISKFLILS GSVVH GSL
Sbjct: 227 PTSGLDSTSALHVIELLSSMVKSKQRIVILSIHQPSYRILQYISKFLILSHGSVVHNGSL 286
Query: 271 ELLEETINNLGYQIPTQLNAIEFAMEIMHPLEDSYSNNNNFLPSVEDAEQFPDLRC---- 326
E LEE I+NLG+QIP QLNA+EF+MEI+ LED N+++F+ E+ FP
Sbjct: 287 ESLEERISNLGFQIPLQLNALEFSMEIIQSLED---NSSSFIVH-ENETSFPSSMWAPEE 342
Query: 327 EKVGG--------VEHQQHAFFLILYEIMVLCSRFWKIIYRTKQLFLARTMQALVGGFGL 378
E +G E+ H ++ + EI+ LCSRFWKIIYRTKQLFLARTMQALVGGFGL
Sbjct: 343 ENIGSDVFQSQYEKENFGHLCYVNMMEILFLCSRFWKIIYRTKQLFLARTMQALVGGFGL 402
Query: 379 GSVYVRVRKDEAGVAERLGLFAFSLSFLLSSTVEALPIYLQERRVLMKEASREAYRISSY 438
SVY++VRKDE G+AERLGLFAFSLSFLLSSTVEALPIYLQER VLMKEASR AYRISSY
Sbjct: 403 ASVYIKVRKDEDGIAERLGLFAFSLSFLLSSTVEALPIYLQERTVLMKEASRGAYRISSY 462
Query: 439 LIANTIVFLPFLFVVSLLFAIPVYWIVGLNPSIEAFVFFIFVVWLIVLMASSLVLFLSAI 498
LIANT VFLPFLFVVSLLFA+PVYWIVGLNPS+ AF FF FVVWLIVLMASSLVLFLS++
Sbjct: 463 LIANTFVFLPFLFVVSLLFAVPVYWIVGLNPSLTAFTFFTFVVWLIVLMASSLVLFLSSV 522
Query: 499 SPDFISGNSLICTVLGAFFLFSGYFIPKEYIPKYWIFMYYISLYRYPLDSLLTNEYWSAR 558
SPDFISGNSLICTVLGAFFLFSGYFIPKE IPKYW+FMYY+SLYRYPLD+LLTNEYW+
Sbjct: 523 SPDFISGNSLICTVLGAFFLFSGYFIPKESIPKYWLFMYYVSLYRYPLDALLTNEYWNVG 582
Query: 559 GECFSWQKYNNVDGDHFSKCLLTGNDVLKSRGLEKDTRWVNVGVMLAFFLFYRVLCWIIL 618
ECFS G S CL+TG DVLKSRG+EKD RW+NVG+M FF+FYR+LCW+IL
Sbjct: 583 NECFS-------QGSS-SMCLVTGFDVLKSRGIEKDNRWMNVGIMFGFFVFYRLLCWVIL 634
Query: 619 SRRASKTT 626
+R+ASKTT
Sbjct: 635 ARKASKTT 642
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449444869|ref|XP_004140196.1| PREDICTED: ABC transporter G family member 23-like [Cucumis sativus] gi|449531739|ref|XP_004172843.1| PREDICTED: ABC transporter G family member 23-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 788 bits (2034), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 409/675 (60%), Positives = 503/675 (74%), Gaps = 74/675 (10%)
Query: 1 MGSCFQQPRPSIEDDSAVLFSTSNSPEEYSTSPSSSFYQPTPSPSLPPQRLKTTCKVTVR 60
M CFQ + I DD+ LFSTSNSPEE ++ SSS + + L TT K++VR
Sbjct: 1 MAVCFQ--KRCIADDTTTLFSTSNSPEETTSLSSSSSHHHS-------PPLVTTKKLSVR 51
Query: 61 NLSYAIQPNTSI---LSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRII 117
N+S+++ PN SI S L+ PK P+++LKSVSF AR S++LA+VGPSGTGKSSLLRI+
Sbjct: 52 NVSFSVLPNRSIPTSFSELIRRPK-PINVLKSVSFVARSSQVLAIVGPSGTGKSSLLRIL 110
Query: 118 SGRVRDQDFDPRSITVNCHQIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKG 177
SGRV+ ++FDP++I++N +K P QLRK+CGFV QEDNLLPLLTV+ETLMF A RL+
Sbjct: 111 SGRVKAKEFDPKAISINGQGMKSPEQLRKLCGFVTQEDNLLPLLTVRETLMFMAKLRLRE 170
Query: 178 MSHKEKEDRVESLMDELGLTHVAGSFVGDEENRGISG----------------------- 214
+ +EKE+RVE LM ELGL HVA SFVGDEE RGISG
Sbjct: 171 LGSEEKEERVERLMQELGLFHVADSFVGDEEKRGISGGERKRVSIGVEMIHDPSILLLDE 230
Query: 215 ----LDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGSL 270
LDSTSALQV EL++SM ++KQRTV+LSIHQP YRILQYISKFLILS G VH+GSL
Sbjct: 231 PTSGLDSTSALQVTELISSMTRSKQRTVILSIHQPGYRILQYISKFLILSHGLTVHFGSL 290
Query: 271 ELLEETINNLGYQIPTQLNAIEFAMEIMHPLEDSYSNNNNFLPSVEDAEQ--------FP 322
+ LE+ I +G QIP QLNA+EFAMEI+ L++ ++N VE+ E+ +P
Sbjct: 291 KSLEKRIGEMGIQIPIQLNALEFAMEIIDKLKE---DSNPPTSQVEEGEENQLFSAPIWP 347
Query: 323 DLRCEKVGGVEHQQH-----------AFFLILYEIMVLCSRFWKIIYRTKQLFLARTMQA 371
+ E + QQ+ + FL EI+ LCSRFWK++YRTKQLFL RT+QA
Sbjct: 348 EEAIE----IAQQQNNNSKQIGIFSTSHFL---EIIYLCSRFWKLLYRTKQLFLGRTLQA 400
Query: 372 LVGGFGLGSVYVRVRKDEAGVAERLGLFAFSLSFLLSSTVEALPIYLQERRVLMKEASRE 431
+VGG GLGSVY+RV++DE GV ERLGLFAFSLSFLLSSTVE+LPI+LQERRVLMKEASR
Sbjct: 401 IVGGVGLGSVYLRVKRDEEGVTERLGLFAFSLSFLLSSTVESLPIFLQERRVLMKEASRG 460
Query: 432 AYRISSYLIANTIVFLPFLFVVSLLFAIPVYWIVGLNPSIEAFVFFIFVVWLIVLMASSL 491
Y+ISSYLIANTI++LPFL V++LFA PVYWIVGLNPSI+AF FF FVVWLIV+MASSL
Sbjct: 461 VYKISSYLIANTIIYLPFLLAVAILFAAPVYWIVGLNPSIQAFAFFTFVVWLIVMMASSL 520
Query: 492 VLFLSAISPDFISGNSLICTVLGAFFLFSGYFIPKEYIPKYWIFMYYISLYRYPLDSLLT 551
VLFLSAISPDFI+GNSLICTVLG FFLFSGYFIPK+ IPK+W+FMYYISLYRYPL+++L
Sbjct: 521 VLFLSAISPDFITGNSLICTVLGGFFLFSGYFIPKQNIPKFWMFMYYISLYRYPLEAMLV 580
Query: 552 NEYWSARGECFSWQKYNNVDGDHFSKCLLTGNDVLKSRGLEKDTRWVNVGVMLAFFLFYR 611
NEYW+A+ ECFSW +D C+LTG DVLK+R L+ D RW+N+G+M+ FF+ YR
Sbjct: 581 NEYWNAKSECFSW-----MDQGQRRVCVLTGGDVLKNRELDGDLRWMNIGIMIGFFVLYR 635
Query: 612 VLCWIILSRRASKTT 626
+LCWI+L+RRAS TT
Sbjct: 636 LLCWIVLARRASTTT 650
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15239738|ref|NP_197442.1| ABC transporter G family member 23 [Arabidopsis thaliana] gi|109896159|sp|Q3E9B8.1|AB23G_ARATH RecName: Full=ABC transporter G family member 23; Short=ABC transporter ABCG.23; Short=AtABCG23; AltName: Full=Probable white-brown complex homolog protein 24; Short=AtWBC24 gi|332005319|gb|AED92702.1| ABC transporter G family member 23 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 745 bits (1924), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 401/659 (60%), Positives = 479/659 (72%), Gaps = 69/659 (10%)
Query: 1 MGSCFQQPRPSI---EDDSAVLFSTSNSPEEYSTSPSSSFYQPTPSPSLPPQRLKTTCKV 57
M SCF + E+DS +LFS SNSP+E+S++ SS P P+P+ +
Sbjct: 1 MASCFHPSAMATSHREEDSIILFSASNSPDEFSSASSSFSSSPLPTPN--------RYSL 52
Query: 58 TVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRII 117
TV NLSY I H P IL SVS A S+ILAVVGPSGTGKS+LL+II
Sbjct: 53 TVTNLSYTIN----------HTP-----ILNSVSLAAESSKILAVVGPSGTGKSTLLKII 97
Query: 118 SGRVRDQDFDPRS-ITVNCHQIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLK 176
SGRV + DP S + +N +I QLR++CGFV Q+D+LLPLLTVKETLM+SA F L+
Sbjct: 98 SGRVNHKALDPSSAVLMNNRKITDYNQLRRLCGFVPQDDDLLPLLTVKETLMYSAKFSLR 157
Query: 177 GMSHKEKEDRVESLMDELGLTHVAGSFVG--DEENRGISG-------------------- 214
+ KE+E+RVESL+ +LGL V SFVG DEE+RG+SG
Sbjct: 158 DSTAKEREERVESLLSDLGLVLVQDSFVGEGDEEDRGVSGGERKRVSIAVEMIRDPPILL 217
Query: 215 -------LDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHY 267
LDS ++LQV+ELLA+MAK+KQRTV+ SIHQPSYRIL YIS +LILSRGSV+H
Sbjct: 218 LDEPTSGLDSRNSLQVVELLATMAKSKQRTVLFSIHQPSYRILDYISDYLILSRGSVIHL 277
Query: 268 GSLELLEETINNLGYQIPTQLNAIEFAMEIMHPLEDSYSNNNNFLPSVEDAEQFPDLRCE 327
GSLE LE++I LG+QIP QLN IEFAMEI+ L N+ + VE + +P+ E
Sbjct: 278 GSLEHLEDSIAKLGFQIPEQLNPIEFAMEIVESLRTFKPNS---VAVVESSSMWPE-NNE 333
Query: 328 KVGGVEHQQHAFFLILYEIMVLCSRFWKIIYRTKQLFLARTMQALVGGFGLGSVYVRVRK 387
G + ++ L + EI LCSRF KIIYRTKQLFLARTMQA+V G GLGSVY R+++
Sbjct: 334 NDGIISKKEAFRVLDVTEISYLCSRFCKIIYRTKQLFLARTMQAVVAGLGLGSVYTRLKR 393
Query: 388 DEAGVAERLGLFAFSLSFLLSSTVEALPIYLQERRVLMKEASREAYRISSYLIANTIVFL 447
DE GVAERLGLFAFSLSFLLSSTVEALPIYL+ERRVLMKE+SR +YRISSY+IANTI F+
Sbjct: 394 DEEGVAERLGLFAFSLSFLLSSTVEALPIYLRERRVLMKESSRGSYRISSYMIANTIAFV 453
Query: 448 PFLFVVSLLFAIPVYWIVGLNPSIEAFVFFIFVVWLIVLMASSLVLFLSAISPDFISGNS 507
PFLFVVSLLF+IPVYWIVGLNPSI+AF FF+ VWLI+LMASSLVLFLSA+SPDFISGNS
Sbjct: 454 PFLFVVSLLFSIPVYWIVGLNPSIQAFSFFVLCVWLIILMASSLVLFLSAVSPDFISGNS 513
Query: 508 LICTVLGAFFLFSGYFIPKEYIPKYWIFMYYISLYRYPLDSLLTNEYWSARGECFSWQKY 567
LICTVLGAFFLFSGYFIPKE IPK W+FMYY+SLYRYPL+S++ NEYWS R ECFS
Sbjct: 514 LICTVLGAFFLFSGYFIPKEKIPKPWMFMYYVSLYRYPLESMVVNEYWSMREECFSSGNM 573
Query: 568 NNVDGDHFSKCLLTGNDVLKSRGLEKDTRWVNVGVMLAFFLFYRVLCWIILSRRASKTT 626
CL+TG DVLK RGL+KDTRW+NVG+MLAFF+FYR+LCW IL R+ASK+T
Sbjct: 574 G---------CLMTGEDVLKERGLDKDTRWINVGIMLAFFVFYRILCWGILLRKASKST 623
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 627 | ||||||
| TAIR|locus:2150290 | 624 | ABCG23 "ATP-binding cassette G | 0.637 | 0.641 | 0.631 | 8e-168 | |
| TAIR|locus:2176937 | 589 | ABCG8 "ATP-binding cassette G8 | 0.880 | 0.937 | 0.407 | 1.4e-105 | |
| TAIR|locus:2117507 | 577 | ABCG4 "ATP-binding cassette G4 | 0.864 | 0.939 | 0.389 | 2.3e-101 | |
| TAIR|locus:2054142 | 649 | ABCG5 "ATP-binding cassette G5 | 0.437 | 0.422 | 0.434 | 3.5e-84 | |
| TAIR|locus:2009640 | 590 | ABCG10 "ATP-binding cassette G | 0.556 | 0.591 | 0.403 | 8.6e-71 | |
| TAIR|locus:2039682 | 740 | ABCG1 "ATP-binding cassette G1 | 0.390 | 0.331 | 0.329 | 2.8e-68 | |
| TAIR|locus:2097258 | 736 | ABCG16 "ATP-binding cassette G | 0.346 | 0.294 | 0.334 | 2e-67 | |
| TAIR|locus:2173184 | 727 | ABCG6 "ATP-binding cassette G6 | 0.346 | 0.298 | 0.325 | 3.3e-53 | |
| TAIR|locus:2049806 | 755 | ABCG2 "ATP-binding cassette G2 | 0.462 | 0.384 | 0.270 | 1.7e-52 | |
| TAIR|locus:2083946 | 739 | ABCG20 "ATP-binding cassette G | 0.430 | 0.365 | 0.297 | 3.3e-52 |
| TAIR|locus:2150290 ABCG23 "ATP-binding cassette G23" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1271 (452.5 bits), Expect = 8.0e-168, Sum P(2) = 8.0e-168
Identities = 262/415 (63%), Positives = 313/415 (75%)
Query: 213 SGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGSLEL 272
SGLDS ++LQV+ELLA+MAK+KQRTV+ SIHQPSYRIL YIS +LILSRGSV+H GSLE
Sbjct: 223 SGLDSRNSLQVVELLATMAKSKQRTVLFSIHQPSYRILDYISDYLILSRGSVIHLGSLEH 282
Query: 273 LEETINNLGYQIPTQLNAIEFAMEIMHPLEDSYSNNNNFLPSVEDAEQFPDLRCEKVGGV 332
LE++I LG+QIP QLN IEFAMEI+ L ++ N+ + VE + +P+ + G+
Sbjct: 283 LEDSIAKLGFQIPEQLNPIEFAMEIVESLR-TFKPNS--VAVVESSSMWPENN--ENDGI 337
Query: 333 EHQQHAFFLI-LYEIMVLCSRFWKIIYRTKQLFLARTMQALVGGFGLGSVYVRVRKDEAG 391
++ AF ++ + EI LCSRF KIIYRTKQLFLARTMQA+V G GLGSVY R+++DE G
Sbjct: 338 ISKKEAFRVLDVTEISYLCSRFCKIIYRTKQLFLARTMQAVVAGLGLGSVYTRLKRDEEG 397
Query: 392 VAERLGXXXXXXXXXXXXTVEALPIYLQERRVLMKEASREAYRISSYLIANTIXXXXXXX 451
VAERLG TVEALPIYL+ERRVLMKE+SR +YRISSY+IANTI
Sbjct: 398 VAERLGLFAFSLSFLLSSTVEALPIYLRERRVLMKESSRGSYRISSYMIANTIAFVPFLF 457
Query: 452 XXXXXXAIPVYWIVGLNPSIEAXXXXXXXXXXXXXMASSLVLFLSAISPDFISGNSLICT 511
+IPVYWIVGLNPSI+A MASSLVLFLSA+SPDFISGNSLICT
Sbjct: 458 VVSLLFSIPVYWIVGLNPSIQAFSFFVLCVWLIILMASSLVLFLSAVSPDFISGNSLICT 517
Query: 512 VLGAFFLFSGYFIPKEYIPKYWIFMYYISLYRYPLDSLLTNEYWSARGECFSWQKYNNVD 571
VLGAFFLFSGYFIPKE IPK W+FMYY+SLYRYPL+S++ NEYWS R ECFS
Sbjct: 518 VLGAFFLFSGYFIPKEKIPKPWMFMYYVSLYRYPLESMVVNEYWSMREECFS-------S 570
Query: 572 GDHFSKCLLTGNDVLKSRGLEKDTRWVNVGVMLAFFLFYRVLCWIILSRRASKTT 626
G+ CL+TG DVLK RGL+KDTRW+NVG+MLAFF+FYR+LCW IL R+ASK+T
Sbjct: 571 GN--MGCLMTGEDVLKERGLDKDTRWINVGIMLAFFVFYRILCWGILLRKASKST 623
|
|
| TAIR|locus:2176937 ABCG8 "ATP-binding cassette G8" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1045 (372.9 bits), Expect = 1.4e-105, P = 1.4e-105
Identities = 246/603 (40%), Positives = 353/603 (58%)
Query: 47 PPQRLKTTCKVTVRNLSYAIQPNTSILSHLLHEPKV--PLHILKSVSFEARDSEILAVVG 104
PP+ T +T ++SY I P TS+ LL P P IL++++ A +EILAVVG
Sbjct: 8 PPETAAYT--LTTSSISYTI-PKTSL--SLLRFPATEPPSFILRNITLTAHPTEILAVVG 62
Query: 105 PSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKKPAQLRKICGFVAQEDNLLPLLTVK 164
PSG GKS+LL I++ + SI +N I P+ RKI +V Q D+ PLLTV
Sbjct: 63 PSGAGKSTLLDILASKTSPTS---GSILLNSIPIN-PSSYRKISSYVPQHDSFFPLLTVS 118
Query: 165 ETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHV-----AGSFVGDEENR---GIS--- 213
ET F+A L S + V SL+ EL LTH+ A G E R G+S
Sbjct: 119 ETFSFAACLLLPNPSIVS--ETVTSLLSELNLTHLSHTRLAQGLSGGERRRVSIGLSLLH 176
Query: 214 ------------GLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSR 261
GLDS SA VI +L S+A ++QRTV+LSIHQPS++IL I + L+LS+
Sbjct: 177 DPCFLLLDEPTSGLDSKSAFDVIHILKSIAVSRQRTVILSIHQPSFKILSIIDRLLLLSK 236
Query: 262 GSVVHYGSLELLEETINNLGYQIPTQLNAIEFAMEIMHPLEDSYSNNN-NFLPSVEDAEQ 320
G+VV++G L+ LE + G+ +P QLN++E+AMEI+ L +S N + LPS+E+ +Q
Sbjct: 237 GTVVYHGRLDSLEGFLLFKGFTVPPQLNSLEYAMEILQELRESDGNTDATALPSIENRKQ 296
Query: 321 FPDLRCEKVGGVEHQQHAFFLILYEIMVLCSRFWKIIYRTKQLFLARTMQALVGGFGLGS 380
R EK V +++ + EI +L RFWKIIYRT+QL L ++ALV G LG+
Sbjct: 297 ----R-EKQSIVRYRKSR----ITEISLLARRFWKIIYRTRQLLLTNALEALVVGLVLGT 347
Query: 381 VYVRVRKDEAGVAERLGXXXXXXXXXXXXTVEALPIYLQERRVLMKEASREAYRISSYLI 440
+Y+ + +AG+ +R G T E LPI++ ER +L++E S YR+SS+++
Sbjct: 348 IYINIGIGKAGIEKRFGMFAFTLTFLLSSTTETLPIFINERPILLRETSSGIYRLSSHIL 407
Query: 441 ANTIXXXXXXXXXXXXXAIPVYWIVGLNPSIEAXXXXXXXXXXXXXMASSLVLFLSAISP 500
ANT+ ++ VY+++GL P+ +A MA+S VLFLS+++P
Sbjct: 408 ANTLVFLPYLFVISIIYSVSVYFLIGLCPTWQAFGYFVLVIWIILLMANSFVLFLSSLAP 467
Query: 501 DFISGNSLICTVLGAFFLFSGYFIPKEYIPKYWIFMYYISLYRYPLDSLLTNEYWSARGE 560
++I+G SL+ +L AFFLFSGYFI KE +PKYW+FMY+ S+Y+Y LD+LL NEY +
Sbjct: 468 NYITGTSLVTILLAAFFLFSGYFISKESLPKYWLFMYFFSMYKYALDALLINEYSCLASK 527
Query: 561 CFSWQKYNNVDGDHFSKCLLTGNDVLKSRGLEKDTRWVNVGVMLAFFLFYRVLCWIILSR 620
C W ++ C++TG DVLK +GL + RW NV V+L FF+ YRVLC++ L R
Sbjct: 528 CLVW-----LEEAQTKICMVTGGDVLKKKGLHEKQRWFNVYVLLGFFVLYRVLCFLALLR 582
Query: 621 RAS 623
R S
Sbjct: 583 RVS 585
|
|
| TAIR|locus:2117507 ABCG4 "ATP-binding cassette G4" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1005 (358.8 bits), Expect = 2.3e-101, P = 2.3e-101
Identities = 231/593 (38%), Positives = 351/593 (59%)
Query: 57 VTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRI 116
++ ++SYA +P LS LL + P IL++++ + S+ILA++GPSG GKS+LL I
Sbjct: 6 LSTSSISYA-KP----LSPLLLTAEQPSFILRNITLTSHPSQILAIIGPSGAGKSTLLDI 60
Query: 117 ISGRVRDQDFDPRSITVNCHQIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRL- 175
++ R SI +N I P+ RKI +V Q D PLLTV ET FSA+ L
Sbjct: 61 LAARTSPTS---GSILLNSVLIN-PSSYRKISSYVPQHDTFFPLLTVSETFTFSASLLLP 116
Query: 176 KGMSHKEKEDRVESLMDELGLTHVAGSFVGD-----EENR---GIS-------------- 213
K +S + V SL+ EL LTH+A + +G E R G+S
Sbjct: 117 KNLS--KVSSVVASLLKELNLTHLAHTRLGQGLSGGERRRVSIGLSLLHDPEVLLLDEPT 174
Query: 214 -GLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGSLEL 272
GLDS SA V+++L S+A +++R V+LSIHQPS++IL I + L+LS+G++V++G L+L
Sbjct: 175 SGLDSKSAFDVVQILKSIATSRERIVILSIHQPSFKILSLIDRVLLLSKGTIVYHGRLDL 234
Query: 273 LEETINNLGYQIPTQLNAIEFAMEIMHPLEDSYSNNNNFLPSVEDAEQFPDLRCE--KVG 330
LE + + G+ +P+QLN++E+AMEI+ + D Y N N LP + P+ + + K
Sbjct: 235 LEAFLLSKGFTVPSQLNSLEYAMEILQNIRDPYENANIALP-----DHCPESKKQNQKQS 289
Query: 331 GVEHQQHAFFLILYEIMVLCSRFWKIIYRTKQLFLARTMQALVGGFGLGSVYVRVRKDEA 390
V ++ + EI +L SRFWKIIYRT+QL L +++LV G LG++Y+ + +
Sbjct: 290 IVRYKSSR----ITEISLLSSRFWKIIYRTRQLLLTNILESLVVGLVLGTIYLNIGTGKE 345
Query: 391 GVAERLGXXXXXXXXXXXXTVEALPIYLQERRVLMKEASREAYRISSYLIANTIXXXXXX 450
G+ +R G T + LPI++ ER +L++E S YR+SS+++ANT+
Sbjct: 346 GIRKRFGLFAFTLTFLLSSTTQTLPIFIDERPILLRETSSGLYRLSSHILANTLVFLPYL 405
Query: 451 XXXXXXXAIPVYWIVGLNPSIEAXXXXXXXXXXXXXMASSLVLFLSAISPDFISGNSLIC 510
++ +Y++VGL S +A MA+S VLFLS+++P++I+G S +
Sbjct: 406 LLIAIIYSVSLYFLVGLCFSWQALAYFVLVIWIIVLMANSFVLFLSSLAPNYIAGTSSVT 465
Query: 511 TVLGAFFLFSGYFIPKEYIPKYWIFMYYISLYRYPLDSLLTNEYWSARGECFSWQKYNNV 570
+L AFFLFSGYFI KE +PKYW+FMY+ S+Y+Y LD+LL NEY +C W + +V
Sbjct: 466 ILLAAFFLFSGYFISKESLPKYWLFMYFFSMYKYALDALLINEYSCLHNKCLVWFEEASV 525
Query: 571 DGDHFSKCLLTGNDVLKSRGLEKDTRWVNVGVMLAFFLFYRVLCWIILSRRAS 623
+ CL+TG DVL GL + RW NV ++L FF+ YRVLC+++L +R S
Sbjct: 526 NS-----CLVTGGDVLDKNGLHERQRWFNVYMLLGFFVLYRVLCFLVLLKRVS 573
|
|
| TAIR|locus:2054142 ABCG5 "ATP-binding cassette G5" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 576 (207.8 bits), Expect = 3.5e-84, Sum P(2) = 3.5e-84
Identities = 125/288 (43%), Positives = 169/288 (58%)
Query: 343 LYEIMVLCSRFWKIIYRTKQLFLARTMQALVGGFGLGSVYVRVRKDEAGVAERLGXXXXX 402
L E M+L RF K I+RTK+LF RT+Q L G LG ++ ++ D G ER+G
Sbjct: 370 LEETMILTHRFSKNIFRTKELFACRTVQMLGSGIVLGLIFHNLKDDLKGARERVGLFAFI 429
Query: 403 XXXXXXXTVEALPIYLQERRVLMKEASREAYRISSYLIANTIXXXXXXXXXXXXXAIPVY 462
T+EALPI+LQER +LMKE S +YR+SSY +AN + + PVY
Sbjct: 430 LTFLLTSTIEALPIFLQEREILMKETSSGSYRVSSYAVANGLVYLPFLLILAILFSTPVY 489
Query: 463 WIVGLNPSIEAXXXXXXXXXXXXXMASSLVLFLSAISPDFISGNSLICTVLGAFFLFSGY 522
W+VGLNPS A A+S+V+ SA+ P+FI GNS+I V+G+FFLFSGY
Sbjct: 490 WLVGLNPSFMAFLHFSLLIWLILYTANSVVVCFSALVPNFIVGNSVISGVMGSFFLFSGY 549
Query: 523 FIPKEYIPKYWIFMYYISLYRYPLDSLLTNEYWSARGECFSWQKYNNVDGDHFSKCLLTG 582
FI IP YWIFM+YISL++YP + L NE+ S +C + G F KCL+T
Sbjct: 550 FISNHEIPGYWIFMHYISLFKYPFEGFLINEF-SKSNKCLEY-------G--FGKCLVTE 599
Query: 583 NDVLKSRGLEKDTRWVNVGVMLAFFLFYRVLCWIIL----SRRASKTT 626
D+LK +++RW NV +ML F L YR + ++IL S+R+ KTT
Sbjct: 600 EDLLKEERYGEESRWRNVVIMLCFVLLYRFISYVILRCRCSQRSFKTT 647
|
|
| TAIR|locus:2009640 ABCG10 "ATP-binding cassette G10" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 651 (234.2 bits), Expect = 8.6e-71, Sum P(2) = 8.6e-71
Identities = 144/357 (40%), Positives = 208/357 (58%)
Query: 213 SGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGSLEL 272
SGLDS SALQV+ LL M + +T+VL+IHQP +RIL+ I + ++LS G VV GS+
Sbjct: 201 SGLDSASALQVVTLLKDMTIKQGKTIVLTIHQPGFRILEQIDRIVLLSNGMVVQNGSVYS 260
Query: 273 LEETINNLGYQIPTQLNAIEFAMEIMHPLEDSYSNNNNFLPSVEDAEQFPDLRCEKVGGV 332
L + I G+QIP ++N +E+A++I LE + + + ++ + GG
Sbjct: 261 LHQKIKFSGHQIPRRVNVLEYAIDIAGSLEPIRTQSCREISCYGHSKTWKSCYIS-AGGE 319
Query: 333 EHQQHAFF-LILYEIMVLCSRFWKIIYRTKQLFLARTMQALVGGFGLGSVYVRV--RKDE 389
HQ + +L E+ +L R K I+RTKQLF R +QA + G LGS+Y+ V +K E
Sbjct: 320 LHQSDSHSNSVLEEVQILGQRSCKNIFRTKQLFTTRALQASIAGLILGSIYLNVGNQKKE 379
Query: 390 AGVAERLGXXXXXXXXXXXXTVEALPIYLQERRVLMKEASREAYRISSYLIANTIXXXXX 449
A V R G T E LPI+LQ+RR+LM+E SR AYR+ SY++A+T+
Sbjct: 380 AKVL-RTGFFAFILTFLLSSTTEGLPIFLQDRRILMRETSRRAYRVLSYVLADTLIFIPF 438
Query: 450 XXXXXXXXAIPVYWIVGLNPSIEAXXXXXXXXXXXXXMASSLVLFLSAISPDFISGNSLI 509
A PVYW+VGL ++ M++S V SA+ P+FI G S+I
Sbjct: 439 LLIISMLFATPVYWLVGLRRELDGFLYFSLVIWIVLLMSNSFVACFSALVPNFIMGTSVI 498
Query: 510 CTVLGAFFLFSGYFIPKEYIPKYWIFMYYISLYRYPLDSLLTNEYWSARGECFSWQK 566
++G+FFLFSGYFI K+ IP YW FM+Y+SL++YP + L+ NEY RG+ F Q+
Sbjct: 499 SGLMGSFFLFSGYFIAKDRIPVYWEFMHYLSLFKYPFECLMINEY---RGDVFLKQQ 552
|
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| TAIR|locus:2039682 ABCG1 "ATP-binding cassette G1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 335 (123.0 bits), Expect = 2.8e-68, Sum P(4) = 2.8e-68
Identities = 83/252 (32%), Positives = 122/252 (48%)
Query: 345 EIMVLCSRFWKIIYRTKQLFLARTMQALVGGFGLGSVYVRVRKDEAGVAERLGXXXXXXX 404
EI L R R +LF R ++ GF L +V+ R+ GV ERLG
Sbjct: 435 EIKTLSKRSMLNSRRQPELFGIRIASVVITGFILATVFWRLDNSPKGVQERLGFFAFAMS 494
Query: 405 XXXXXTVEALPIYLQERRVLMKEASREAYRISSYLIANTIXXXXXXXXXXXXXAIPVYWI 464
+ALP++LQER + M+E + AYR SSY++++ I A YW
Sbjct: 495 TMFYTCADALPVFLQERYIFMRETAYNAYRRSSYVLSHAIVSFPSLIFLSVAFAATTYWA 554
Query: 465 VGLNPSIEAXXXXXXXXXXXXXMASSLVLFLSAISPDFISGNSLICTVLGAFFLFSGYFI 524
VGL+ + SS V FLS + P + G +++ +L F LFSG+FI
Sbjct: 555 VGLDGGLTGLLFYCLIILASFWSGSSFVTFLSGVVPSVMLGYTIVVAILAYFLLFSGFFI 614
Query: 525 PKEYIPKYWIFMYYISLYRYPLDSLLTNEYWSARGECF--SWQKYNNVD-GD--HFSKCL 579
+ IP YWI+ +Y+SL +YP +++L NE+ A +CF Q ++N G+ K
Sbjct: 615 NRNRIPDYWIWFHYMSLVKYPYEAVLQNEFSDAT-KCFVRGVQIFDNTPLGELPEVMKLK 673
Query: 580 LTGNDVLKSRGL 591
L G V KS G+
Sbjct: 674 LLGT-VSKSLGV 684
|
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| TAIR|locus:2097258 ABCG16 "ATP-binding cassette G16" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 330 (121.2 bits), Expect = 2.0e-67, Sum P(4) = 2.0e-67
Identities = 73/218 (33%), Positives = 109/218 (50%)
Query: 345 EIMVLCSRFWKIIYRTKQLFLARTMQALVGGFGLGSVYVRVRKDEAGVAERLGXXXXXXX 404
EI L R R +L R +V GF L +V+ R+ GV ERLG
Sbjct: 431 EIKTLTRRSILNSRRQPELLGMRLATVIVTGFILATVFWRLDNSPKGVQERLGFFAFAMS 490
Query: 405 XXXXXTVEALPIYLQERRVLMKEASREAYRISSYLIANTIXXXXXXXXXXXXXAIPVYWI 464
+ALP++LQER + M+E + AYR SSY++++ I A+ +W
Sbjct: 491 TMFYTCADALPVFLQERYIFMRETAYNAYRRSSYVLSHAIVTFPSLIFLSLAFAVTTFWA 550
Query: 465 VGLNPSIEAXXXXXXXXXXXXXMASSLVLFLSAISPDFISGNSLICTVLGAFFLFSGYFI 524
VGL + SS V FLS + P + G +++ +L F LFSG+FI
Sbjct: 551 VGLEGGLMGFLFYCLIILASFWSGSSFVTFLSGVVPHVMLGYTIVVAILAYFLLFSGFFI 610
Query: 525 PKEYIPKYWIFMYYISLYRYPLDSLLTNEYWSARGECF 562
++ IP+YWI+ +Y+SL +YP +++L NE+ S ECF
Sbjct: 611 NRDRIPQYWIWFHYLSLVKYPYEAVLQNEF-SDPTECF 647
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| TAIR|locus:2173184 ABCG6 "ATP-binding cassette G6" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 320 (117.7 bits), Expect = 3.3e-53, Sum P(3) = 3.3e-53
Identities = 71/218 (32%), Positives = 110/218 (50%)
Query: 345 EIMVLCSRFWKIIYRTKQLFLARTMQALVGGFGLGSVYVRVRKDEAGVAERLGXXXXXXX 404
E+ VL R R +LF R LV GF L +++ ++ GV ERLG
Sbjct: 422 ELAVLAKRSMTNSRRQPELFGIRLGAVLVTGFILATMFWQLDNSPKGVQERLGCFAFAMS 481
Query: 405 XXXXXTVEALPIYLQERRVLMKEASREAYRISSYLIANTIXXXXXXXXXXXXXAIPVYWI 464
+ALP++LQER + M+E + AYR SSY++++++ A +W
Sbjct: 482 TTFYTCADALPVFLQERFIFMRETAYNAYRRSSYVLSHSLVALPSLIILSLAFAAITFWG 541
Query: 465 VGLNPSIEAXXXXXXXXXXXXXMASSLVLFLSAISPDFISGNSLICTVLGAFFLFSGYFI 524
VGL+ + SS V FLS + P + G +++ +L F LFSG+FI
Sbjct: 542 VGLDGGLMGFLFYFLVILASFWAGSSFVTFLSGVVPHVMLGYTIVVAILAYFLLFSGFFI 601
Query: 525 PKEYIPKYWIFMYYISLYRYPLDSLLTNEYWSARGECF 562
++ IP YWI+ +YISL +YP +++L NE+ +CF
Sbjct: 602 NRDRIPGYWIWFHYISLVKYPYEAVLLNEFGDPT-KCF 638
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| TAIR|locus:2049806 ABCG2 "ATP-binding cassette G2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 310 (114.2 bits), Expect = 1.7e-52, Sum P(3) = 1.7e-52
Identities = 83/307 (27%), Positives = 137/307 (44%)
Query: 271 ELLEETINNLGYQIPTQLNAIEFAMEIMHPLEDSYSNNNNF---LPSVEDAEQFPDLRCE 327
E + I L Y +EF + SY+NNN + S+++A R +
Sbjct: 364 EFALDLIRELEYSTEGTKPLVEFHKQWRAKQAPSYNNNNKRNTNVSSLKEAITASISRGK 423
Query: 328 KVGGVEHQQHAFFLILYEIMVLCSRFW-KIIYRTKQLFL-ARTMQALVG---------GF 376
V G + + ++ + FW ++I K+ L +R L+G G
Sbjct: 424 LVSGATNNNSSNLTPSFQ--TFANPFWIEMIVIGKRAILNSRRQPELLGMRLGAVMVTGI 481
Query: 377 GLGSVYVRVRKDEAGVAERLGXXXXXXXXXXXXTVEALPIYLQERRVLMKEASREAYRIS 436
L +++ + G ERLG EA+P++LQER + M+E + AYR S
Sbjct: 482 ILATMFTNLDNSPKGAQERLGFFAFAMSTTFYTCAEAIPVFLQERYIFMRETAYNAYRRS 541
Query: 437 SYLIANTIXXXXXXXXXXXXXAIPVYWIVGLNPSIEAXXXXXXXXXXXXXMASSLVLFLS 496
SY+++ +I A +W VGL+ SS V FLS
Sbjct: 542 SYVLSQSIISIPALIVLSASFAATTFWAVGLDGGANGFFFFYFTILASFWAGSSFVTFLS 601
Query: 497 AISPDFISGNSLICTVLGAFFLFSGYFIPKEYIPKYWIFMYYISLYRYPLDSLLTNEYWS 556
+ P+ + G +++ +L F LFSG+FI ++ IP YW++ +YISL +YP + +L NE+ +
Sbjct: 602 GVIPNVMLGFTVVVAILAYFLLFSGFFISRDRIPVYWLWFHYISLVKYPYEGVLQNEFQN 661
Query: 557 ARGECFS 563
CF+
Sbjct: 662 PT-RCFA 667
|
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| TAIR|locus:2083946 ABCG20 "ATP-binding cassette G20" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 308 (113.5 bits), Expect = 3.3e-52, Sum P(3) = 3.3e-52
Identities = 82/276 (29%), Positives = 129/276 (46%)
Query: 291 IEFAMEIMHPLEDSYSNNNNFLPSVEDAEQFPDLRCEKVGGVEHQQHAF--FLILY--EI 346
+EF + S S N + S++DA R + V G + + +F F + E+
Sbjct: 377 VEFHKQWRAKQTSSQSRRNTNV-SLKDAISASISRGKLVSGATNLRSSFQTFANPFWTEM 435
Query: 347 MVLCSRFWKIIYRTKQLFLARTMQALVGGFGLGSVYVRVRKDEAGVAERLGXXXXXXXXX 406
+V+ R R +LF R LV G L +++ ++ G+ ERLG
Sbjct: 436 LVIGKRSILNSRRQPELFGIRLGAVLVTGMILATIFWKLDNSPRGIQERLGFFAFAMSTT 495
Query: 407 XXXTVEALPIYLQERRVLMKEASREAYRISSYLIANTIXXXXXXXXXXXXXAIPVYWIVG 466
EA+P++LQER + M+E + AYR SSY++A+TI A + VG
Sbjct: 496 FYTCAEAIPVFLQERYIFMRETAYNAYRRSSYVLAHTIISIPALIILSAAFAASTFSAVG 555
Query: 467 LNPSIEAXXXXXXXXXXXXXMASSLVLFLSAISPDFISGNSLICTVLGAFFLFSGYFIPK 526
L E SS V FLS + + G +++ +L F LFSG+FI +
Sbjct: 556 LAGGSEGFLFFFFTILTAFWAGSSFVTFLSGVVSHVMIGFTVVVAILAYFLLFSGFFISR 615
Query: 527 EYIPKYWIFMYYISLYRYPLDSLLTNEYWSARGECF 562
+ IP YWI+ +Y+SL +YP + +L NE+ +CF
Sbjct: 616 DRIPLYWIWFHYLSLVKYPYEGVLQNEFEDPT-KCF 650
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q3E9B8 | AB23G_ARATH | No assigned EC number | 0.6084 | 0.9409 | 0.9455 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | GSVIVG00022267001 | SubName- Full=Chromosome chr6 scaffold_25, whole genome shotgun sequence; (650 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
 | GSVIVG00034338001 | SubName- Full=Chromosome chr9 scaffold_7, whole genome shotgun sequence; (830 aa) | • | 0.415 | |||||||
 | GSVIVG00034823001 | SubName- Full=Chromosome chr4 scaffold_73, whole genome shotgun sequence; (848 aa) | • | 0.403 | |||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 627 | |||
| TIGR00955 | 617 | TIGR00955, 3a01204, The Eye Pigment Precursor Tran | 2e-96 | |
| PLN03211 | 659 | PLN03211, PLN03211, ABC transporter G-25; Provisio | 1e-53 | |
| TIGR00956 | 1394 | TIGR00956, 3a01205, Pleiotropic Drug Resistance (P | 4e-53 | |
| pfam01061 | 210 | pfam01061, ABC2_membrane, ABC-2 type transporter | 4e-42 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 8e-39 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 2e-38 | |
| TIGR00956 | 1394 | TIGR00956, 3a01205, Pleiotropic Drug Resistance (P | 2e-37 | |
| cd03234 | 226 | cd03234, ABCG_White, White pigment protein homolog | 2e-36 | |
| PLN03140 | 1470 | PLN03140, PLN03140, ABC transporter G family membe | 7e-33 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 2e-25 | |
| cd03232 | 192 | cd03232, ABCG_PDR_domain2, Second domain of the pl | 4e-25 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 8e-23 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 1e-22 | |
| cd03263 | 220 | cd03263, ABC_subfamily_A, ATP-binding cassette dom | 1e-22 | |
| cd03233 | 202 | cd03233, ABCG_PDR_domain1, First domain of the ple | 7e-22 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 8e-21 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 8e-21 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 1e-20 | |
| cd03293 | 220 | cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c | 2e-20 | |
| cd03262 | 213 | cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai | 2e-19 | |
| COG4555 | 245 | COG4555, NatA, ABC-type Na+ transport system, ATPa | 2e-19 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 6e-19 | |
| TIGR02315 | 243 | TIGR02315, ABC_phnC, phosphonate ABC transporter, | 1e-18 | |
| COG1126 | 240 | COG1126, GlnQ, ABC-type polar amino acid transport | 2e-18 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 7e-18 | |
| COG1135 | 339 | COG1135, AbcC, ABC-type metal ion transport system | 8e-18 | |
| cd03297 | 214 | cd03297, ABC_ModC_molybdenum_transporter, ATP-bind | 1e-17 | |
| COG1116 | 248 | COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon | 2e-17 | |
| cd03264 | 211 | cd03264, ABC_drug_resistance_like, ABC-type multid | 1e-16 | |
| cd03266 | 218 | cd03266, ABC_NatA_sodium_exporter, ATP-binding cas | 3e-16 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 4e-16 | |
| cd03261 | 235 | cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca | 4e-16 | |
| TIGR01188 | 302 | TIGR01188, drrA, daunorubicin resistance ABC trans | 7e-16 | |
| cd03258 | 233 | cd03258, ABC_MetN_methionine_transporter, ATP-bind | 1e-15 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 1e-15 | |
| PLN03140 | 1470 | PLN03140, PLN03140, ABC transporter G family membe | 2e-15 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 3e-15 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 4e-15 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 7e-15 | |
| COG4181 | 228 | COG4181, COG4181, Predicted ABC-type transport sys | 8e-15 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 1e-14 | |
| COG0410 | 237 | COG0410, LivF, ABC-type branched-chain amino acid | 3e-14 | |
| cd03269 | 210 | cd03269, ABC_putative_ATPase, ATP-binding cassette | 3e-14 | |
| COG4152 | 300 | COG4152, COG4152, ABC-type uncharacterized transpo | 3e-14 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 4e-14 | |
| cd03260 | 227 | cd03260, ABC_PstB_phosphate_transporter, ATP-bindi | 4e-14 | |
| TIGR03522 | 301 | TIGR03522, GldA_ABC_ATP, gliding motility-associat | 4e-14 | |
| COG4525 | 259 | COG4525, TauB, ABC-type taurine transport system, | 1e-13 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 1e-13 | |
| TIGR02982 | 220 | TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi | 3e-13 | |
| COG1125 | 309 | COG1125, OpuBA, ABC-type proline/glycine betaine t | 3e-13 | |
| COG1118 | 345 | COG1118, CysA, ABC-type sulfate/molybdate transpor | 3e-13 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 6e-13 | |
| cd03219 | 236 | cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas | 7e-13 | |
| COG0444 | 316 | COG0444, DppD, ABC-type dipeptide/oligopeptide/nic | 1e-12 | |
| cd03292 | 214 | cd03292, ABC_FtsE_transporter, ATP-binding cassett | 1e-12 | |
| PRK11124 | 242 | PRK11124, artP, arginine transporter ATP-binding s | 2e-12 | |
| COG2884 | 223 | COG2884, FtsE, Predicted ATPase involved in cell d | 2e-12 | |
| PLN03140 | 1470 | PLN03140, PLN03140, ABC transporter G family membe | 3e-12 | |
| COG0411 | 250 | COG0411, LivG, ABC-type branched-chain amino acid | 5e-12 | |
| cd03218 | 232 | cd03218, ABC_YhbG, ATP-binding cassette component | 6e-12 | |
| cd03265 | 220 | cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist | 1e-11 | |
| cd03246 | 173 | cd03246, ABCC_Protease_Secretion, ATP-binding cass | 1e-11 | |
| cd03220 | 224 | cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon | 1e-11 | |
| TIGR00968 | 237 | TIGR00968, 3a0106s01, sulfate ABC transporter, ATP | 2e-11 | |
| PRK09493 | 240 | PRK09493, glnQ, glutamine ABC transporter ATP-bind | 2e-11 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 2e-11 | |
| TIGR01277 | 213 | TIGR01277, thiQ, thiamine ABC transporter, ATP-bin | 3e-11 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 3e-11 | |
| TIGR02673 | 214 | TIGR02673, FtsE, cell division ATP-binding protein | 3e-11 | |
| PRK14239 | 252 | PRK14239, PRK14239, phosphate transporter ATP-bind | 3e-11 | |
| COG4598 | 256 | COG4598, HisP, ABC-type histidine transport system | 3e-11 | |
| COG3842 | 352 | COG3842, PotA, ABC-type spermidine/putrescine tran | 4e-11 | |
| COG1127 | 263 | COG1127, Ttg2A, ABC-type transport system involved | 5e-11 | |
| COG1124 | 252 | COG1124, DppF, ABC-type dipeptide/oligopeptide/nic | 5e-11 | |
| cd03295 | 242 | cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas | 6e-11 | |
| TIGR02211 | 221 | TIGR02211, LolD_lipo_ex, lipoprotein releasing sys | 6e-11 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 6e-11 | |
| PRK11264 | 250 | PRK11264, PRK11264, putative amino-acid ABC transp | 6e-11 | |
| COG1134 | 249 | COG1134, TagH, ABC-type polysaccharide/polyol phos | 6e-11 | |
| cd03268 | 208 | cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c | 7e-11 | |
| PRK09984 | 262 | PRK09984, PRK09984, phosphonate/organophosphate es | 9e-11 | |
| TIGR03265 | 353 | TIGR03265, PhnT2, putative 2-aminoethylphosphonate | 2e-10 | |
| PRK10584 | 228 | PRK10584, PRK10584, putative ABC transporter ATP-b | 2e-10 | |
| TIGR01184 | 230 | TIGR01184, ntrCD, nitrate transport ATP-binding su | 2e-10 | |
| cd03299 | 235 | cd03299, ABC_ModC_like, ATP-binding cassette domai | 2e-10 | |
| COG4161 | 242 | COG4161, ArtP, ABC-type arginine transport system, | 2e-10 | |
| COG4604 | 252 | COG4604, CeuD, ABC-type enterochelin transport sys | 3e-10 | |
| TIGR03410 | 230 | TIGR03410, urea_trans_UrtE, urea ABC transporter, | 4e-10 | |
| COG1137 | 243 | COG1137, YhbG, ABC-type (unclassified) transport s | 4e-10 | |
| COG1117 | 253 | COG1117, PstB, ABC-type phosphate transport system | 5e-10 | |
| PRK13548 | 258 | PRK13548, hmuV, hemin importer ATP-binding subunit | 6e-10 | |
| PRK13539 | 207 | PRK13539, PRK13539, cytochrome c biogenesis protei | 7e-10 | |
| COG4148 | 352 | COG4148, ModC, ABC-type molybdate transport system | 9e-10 | |
| cd03296 | 239 | cd03296, ABC_CysA_sulfate_importer, ATP-binding ca | 1e-09 | |
| TIGR03415 | 382 | TIGR03415, ABC_choXWV_ATP, choline ABC transporter | 1e-09 | |
| TIGR03864 | 236 | TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi | 1e-09 | |
| COG0396 | 251 | COG0396, sufC, Cysteine desulfurase activator ATPa | 2e-09 | |
| TIGR00972 | 247 | TIGR00972, 3a0107s01c2, phosphate ABC transporter, | 2e-09 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 3e-09 | |
| cd03301 | 213 | cd03301, ABC_MalK_N, The N-terminal ATPase domain | 3e-09 | |
| TIGR03258 | 362 | TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans | 3e-09 | |
| pfam00005 | 119 | pfam00005, ABC_tran, ABC transporter | 3e-09 | |
| cd03300 | 232 | cd03300, ABC_PotA_N, ATP-binding cassette domain o | 8e-09 | |
| COG3840 | 231 | COG3840, ThiQ, ABC-type thiamine transport system, | 8e-09 | |
| cd03226 | 205 | cd03226, ABC_cobalt_CbiO_domain2, Second domain of | 8e-09 | |
| TIGR03005 | 252 | TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB | 9e-09 | |
| COG4136 | 213 | COG4136, COG4136, ABC-type uncharacterized transpo | 1e-08 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 1e-08 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 2e-08 | |
| PRK13652 | 277 | PRK13652, cbiO, cobalt transporter ATP-binding sub | 2e-08 | |
| PRK11248 | 255 | PRK11248, tauB, taurine transporter ATP-binding su | 3e-08 | |
| TIGR02142 | 354 | TIGR02142, modC_ABC, molybdenum ABC transporter, A | 3e-08 | |
| PRK14256 | 252 | PRK14256, PRK14256, phosphate ABC transporter ATP- | 3e-08 | |
| TIGR01166 | 190 | TIGR01166, cbiO, cobalt transport protein ATP-bind | 4e-08 | |
| TIGR01189 | 198 | TIGR01189, ccmA, heme ABC exporter, ATP-binding pr | 4e-08 | |
| TIGR02324 | 224 | TIGR02324, CP_lyasePhnL, phosphonate C-P lyase sys | 4e-08 | |
| TIGR03411 | 242 | TIGR03411, urea_trans_UrtD, urea ABC transporter, | 4e-08 | |
| COG4133 | 209 | COG4133, CcmA, ABC-type transport system involved | 5e-08 | |
| PRK14264 | 305 | PRK14264, PRK14264, phosphate ABC transporter ATP- | 5e-08 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 6e-08 | |
| PRK14240 | 250 | PRK14240, PRK14240, phosphate transporter ATP-bind | 6e-08 | |
| PRK14272 | 252 | PRK14272, PRK14272, phosphate ABC transporter ATP- | 6e-08 | |
| TIGR03608 | 206 | TIGR03608, L_ocin_972_ABC, putative bacteriocin ex | 7e-08 | |
| cd03298 | 211 | cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin | 7e-08 | |
| PRK14270 | 251 | PRK14270, PRK14270, phosphate ABC transporter ATP- | 8e-08 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 1e-07 | |
| COG4559 | 259 | COG4559, COG4559, ABC-type hemin transport system, | 1e-07 | |
| PRK13639 | 275 | PRK13639, cbiO, cobalt transporter ATP-binding sub | 1e-07 | |
| cd03294 | 269 | cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette | 1e-07 | |
| PRK10895 | 241 | PRK10895, PRK10895, lipopolysaccharide ABC transpo | 1e-07 | |
| COG4618 | 580 | COG4618, ArpD, ABC-type protease/lipase transport | 2e-07 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 2e-07 | |
| COG4987 | 573 | COG4987, CydC, ABC-type transport system involved | 2e-07 | |
| COG4175 | 386 | COG4175, ProV, ABC-type proline/glycine betaine tr | 2e-07 | |
| PRK11153 | 343 | PRK11153, metN, DL-methionine transporter ATP-bind | 3e-07 | |
| PRK14267 | 253 | PRK14267, PRK14267, phosphate ABC transporter ATP- | 3e-07 | |
| TIGR01288 | 303 | TIGR01288, nodI, ATP-binding ABC transporter famil | 3e-07 | |
| PRK13536 | 340 | PRK13536, PRK13536, nodulation factor exporter sub | 4e-07 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 4e-07 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 4e-07 | |
| cd03249 | 238 | cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett | 5e-07 | |
| PRK09452 | 375 | PRK09452, potA, putrescine/spermidine ABC transpor | 6e-07 | |
| cd03267 | 236 | cd03267, ABC_NatA_like, ATP-binding cassette domai | 6e-07 | |
| PRK11000 | 369 | PRK11000, PRK11000, maltose/maltodextrin transport | 8e-07 | |
| TIGR03797 | 686 | TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste | 8e-07 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 1e-06 | |
| PRK14250 | 241 | PRK14250, PRK14250, phosphate ABC transporter ATP- | 1e-06 | |
| COG4674 | 249 | COG4674, COG4674, Uncharacterized ABC-type transpo | 1e-06 | |
| PRK13636 | 283 | PRK13636, cbiO, cobalt transporter ATP-binding sub | 2e-06 | |
| PRK10619 | 257 | PRK10619, PRK10619, histidine/lysine/arginine/orni | 2e-06 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 2e-06 | |
| PRK09536 | 402 | PRK09536, btuD, corrinoid ABC transporter ATPase; | 3e-06 | |
| PRK14247 | 250 | PRK14247, PRK14247, phosphate ABC transporter ATP- | 3e-06 | |
| cd03254 | 229 | cd03254, ABCC_Glucan_exporter_like, ATP-binding ca | 3e-06 | |
| PRK11629 | 233 | PRK11629, lolD, lipoprotein transporter ATP-bindin | 3e-06 | |
| PRK14268 | 258 | PRK14268, PRK14268, phosphate ABC transporter ATP- | 3e-06 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 3e-06 | |
| PRK14262 | 250 | PRK14262, PRK14262, phosphate ABC transporter ATP- | 4e-06 | |
| PRK09544 | 251 | PRK09544, znuC, high-affinity zinc transporter ATP | 4e-06 | |
| PRK13635 | 279 | PRK13635, cbiO, cobalt transporter ATP-binding sub | 4e-06 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 5e-06 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 5e-06 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 5e-06 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 5e-06 | |
| TIGR01978 | 243 | TIGR01978, sufC, FeS assembly ATPase SufC | 5e-06 | |
| cd03217 | 200 | cd03217, ABC_FeS_Assembly, ABC-type transport syst | 5e-06 | |
| PRK10535 | 648 | PRK10535, PRK10535, macrolide transporter ATP-bind | 6e-06 | |
| PRK13537 | 306 | PRK13537, PRK13537, nodulation ABC transporter Nod | 8e-06 | |
| PRK11701 | 258 | PRK11701, phnK, phosphonate C-P lyase system prote | 8e-06 | |
| COG1119 | 257 | COG1119, ModF, ABC-type molybdenum transport syste | 8e-06 | |
| CHL00131 | 252 | CHL00131, ycf16, sulfate ABC transporter protein; | 1e-05 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 1e-05 | |
| COG4608 | 268 | COG4608, AppF, ABC-type oligopeptide transport sys | 1e-05 | |
| PRK10253 | 265 | PRK10253, PRK10253, iron-enterobactin transporter | 1e-05 | |
| COG5265 | 497 | COG5265, ATM1, ABC-type transport system involved | 1e-05 | |
| PRK11650 | 356 | PRK11650, ugpC, glycerol-3-phosphate transporter A | 1e-05 | |
| PRK14266 | 250 | PRK14266, PRK14266, phosphate ABC transporter ATP- | 1e-05 | |
| PRK11144 | 352 | PRK11144, modC, molybdate transporter ATP-binding | 1e-05 | |
| TIGR01186 | 363 | TIGR01186, proV, glycine betaine/L-proline transpo | 1e-05 | |
| PRK14245 | 250 | PRK14245, PRK14245, phosphate ABC transporter ATP- | 2e-05 | |
| PRK14253 | 249 | PRK14253, PRK14253, phosphate ABC transporter ATP- | 2e-05 | |
| PRK14255 | 252 | PRK14255, PRK14255, phosphate ABC transporter ATP- | 2e-05 | |
| cd03231 | 201 | cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog | 2e-05 | |
| cd03216 | 163 | cd03216, ABC_Carb_Monos_I, First domain of the ATP | 2e-05 | |
| PRK10771 | 232 | PRK10771, thiQ, thiamine transporter ATP-binding s | 2e-05 | |
| PRK10851 | 353 | PRK10851, PRK10851, sulfate/thiosulfate transporte | 3e-05 | |
| PRK13631 | 320 | PRK13631, cbiO, cobalt transporter ATP-binding sub | 4e-05 | |
| COG0842 | 286 | COG0842, COG0842, ABC-type multidrug transport sys | 4e-05 | |
| cd03252 | 237 | cd03252, ABCC_Hemolysin, ATP-binding cassette doma | 4e-05 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 4e-05 | |
| PRK14249 | 251 | PRK14249, PRK14249, phosphate ABC transporter ATP- | 5e-05 | |
| PRK13650 | 279 | PRK13650, cbiO, cobalt transporter ATP-binding sub | 5e-05 | |
| COG4107 | 258 | COG4107, PhnK, ABC-type phosphonate transport syst | 6e-05 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 6e-05 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 7e-05 | |
| TIGR01842 | 544 | TIGR01842, type_I_sec_PrtD, type I secretion syste | 7e-05 | |
| PRK14246 | 257 | PRK14246, PRK14246, phosphate ABC transporter ATP- | 7e-05 | |
| PRK11819 | 556 | PRK11819, PRK11819, putative ABC transporter ATP-b | 8e-05 | |
| PRK13643 | 288 | PRK13643, cbiO, cobalt transporter ATP-binding sub | 8e-05 | |
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 9e-05 | |
| PRK10908 | 222 | PRK10908, PRK10908, cell division protein FtsE; Pr | 9e-05 | |
| PRK14235 | 267 | PRK14235, PRK14235, phosphate transporter ATP-bind | 9e-05 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 9e-05 | |
| PRK13538 | 204 | PRK13538, PRK13538, cytochrome c biogenesis protei | 1e-04 | |
| TIGR02314 | 343 | TIGR02314, ABC_MetN, D-methionine ABC transporter, | 1e-04 | |
| PRK10070 | 400 | PRK10070, PRK10070, glycine betaine transporter AT | 1e-04 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 1e-04 | |
| PRK13641 | 287 | PRK13641, cbiO, cobalt transporter ATP-binding sub | 1e-04 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 2e-04 | |
| TIGR02204 | 576 | TIGR02204, MsbA_rel, ABC transporter, permease/ATP | 2e-04 | |
| PRK13634 | 290 | PRK13634, cbiO, cobalt transporter ATP-binding sub | 2e-04 | |
| PRK11174 | 588 | PRK11174, PRK11174, cysteine/glutathione ABC trans | 2e-04 | |
| cd03250 | 204 | cd03250, ABCC_MRP_domain1, ATP-binding cassette do | 2e-04 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 2e-04 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 2e-04 | |
| cd03248 | 226 | cd03248, ABCC_TAP, ATP-binding cassette domain of | 2e-04 | |
| PRK14261 | 253 | PRK14261, PRK14261, phosphate ABC transporter ATP- | 4e-04 | |
| PRK14251 | 251 | PRK14251, PRK14251, phosphate ABC transporter ATP- | 4e-04 | |
| PRK11607 | 377 | PRK11607, potG, putrescine transporter ATP-binding | 4e-04 | |
| PRK14242 | 253 | PRK14242, PRK14242, phosphate transporter ATP-bind | 4e-04 | |
| PRK10744 | 260 | PRK10744, pstB, phosphate transporter ATP-binding | 4e-04 | |
| TIGR01193 | 708 | TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t | 4e-04 | |
| PRK11160 | 574 | PRK11160, PRK11160, cysteine/glutathione ABC trans | 4e-04 | |
| PRK13644 | 274 | PRK13644, cbiO, cobalt transporter ATP-binding sub | 4e-04 | |
| cd03223 | 166 | cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset | 4e-04 | |
| TIGR01187 | 325 | TIGR01187, potA, spermidine/putrescine ABC transpo | 4e-04 | |
| COG4167 | 267 | COG4167, SapF, ABC-type antimicrobial peptide tran | 4e-04 | |
| PRK03695 | 248 | PRK03695, PRK03695, vitamin B12-transporter ATPase | 5e-04 | |
| COG4619 | 223 | COG4619, COG4619, ABC-type uncharacterized transpo | 5e-04 | |
| TIGR02323 | 253 | TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys | 5e-04 | |
| PRK13657 | 588 | PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra | 5e-04 | |
| PRK13637 | 287 | PRK13637, cbiO, cobalt transporter ATP-binding sub | 5e-04 | |
| pfam13401 | 124 | pfam13401, AAA_22, AAA domain | 6e-04 | |
| PRK13646 | 286 | PRK13646, cbiO, cobalt transporter ATP-binding sub | 6e-04 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 7e-04 | |
| PRK14274 | 259 | PRK14274, PRK14274, phosphate ABC transporter ATP- | 8e-04 | |
| PRK10247 | 225 | PRK10247, PRK10247, putative ABC transporter ATP-b | 8e-04 | |
| COG1101 | 263 | COG1101, PhnK, ABC-type uncharacterized transport | 8e-04 | |
| PRK14254 | 285 | PRK14254, PRK14254, phosphate ABC transporter ATP- | 8e-04 | |
| pfam12698 | 278 | pfam12698, ABC2_membrane_3, ABC-2 family transport | 0.001 | |
| PRK13640 | 282 | PRK13640, cbiO, cobalt transporter ATP-binding sub | 0.001 | |
| PRK14275 | 286 | PRK14275, PRK14275, phosphate ABC transporter ATP- | 0.001 | |
| PRK14236 | 272 | PRK14236, PRK14236, phosphate transporter ATP-bind | 0.001 | |
| TIGR03740 | 223 | TIGR03740, galliderm_ABC, gallidermin-class lantib | 0.001 | |
| PRK15112 | 267 | PRK15112, PRK15112, antimicrobial peptide ABC syst | 0.001 | |
| COG4586 | 325 | COG4586, COG4586, ABC-type uncharacterized transpo | 0.001 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 0.002 | |
| PRK14238 | 271 | PRK14238, PRK14238, phosphate transporter ATP-bind | 0.002 | |
| COG4178 | 604 | COG4178, COG4178, ABC-type uncharacterized transpo | 0.002 | |
| COG4778 | 235 | COG4778, PhnL, ABC-type phosphonate transport syst | 0.002 | |
| cd03237 | 246 | cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-bin | 0.002 | |
| PRK13632 | 271 | PRK13632, cbiO, cobalt transporter ATP-binding sub | 0.002 | |
| cd03215 | 182 | cd03215, ABC_Carb_Monos_II, Second domain of the A | 0.003 | |
| PRK14243 | 264 | PRK14243, PRK14243, phosphate transporter ATP-bind | 0.003 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 0.004 | |
| PRK14265 | 274 | PRK14265, PRK14265, phosphate ABC transporter ATP- | 0.004 | |
| PRK13540 | 200 | PRK13540, PRK13540, cytochrome c biogenesis protei | 0.004 | |
| PRK13651 | 305 | PRK13651, PRK13651, cobalt transporter ATP-binding | 0.004 |
| >gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Score = 308 bits (790), Expect = 2e-96
Identities = 149/590 (25%), Positives = 265/590 (44%), Gaps = 67/590 (11%)
Query: 85 HILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVR-DQDFDPRSITVNCHQIKKPAQ 143
H+LK+VS A+ E+LAV+G SG GK++L+ ++ R S+ +N I +
Sbjct: 39 HLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSG-SVLLNGMPIDAK-E 96
Query: 144 LRKICGFVAQEDNLLPLLTVKETLMFSANFRLK-GMSHKEKEDRVESLMDELGLTHVAGS 202
+R I +V Q+D +P LTV+E LMF A+ R+ ++ KEK +RV+ ++ LGL A +
Sbjct: 97 MRAISAYVQQDDLFIPTLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANT 156
Query: 203 FVGDEEN-RGIS---------------------------GLDSTSALQVIELLASMAKAK 234
+G +G+S GLDS A V+++L +A+ K
Sbjct: 157 RIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQ-K 215
Query: 235 QRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGSLELLEETINNLGYQIPTQLNAIEFA 294
+T++ +IHQPS + + K ++++ G V + GS + ++LG+ P N +F
Sbjct: 216 GKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAVPFFSDLGHPCPENYNPADFY 275
Query: 295 MEIMHPLEDSYSNNNNFLPSVE---DAEQFPDL--RCEKVGGVEHQQHAFFL-------- 341
+++ L + N +E D+ D+ + + +
Sbjct: 276 VQV---LAVIPGSENESRERIEKICDSFAVSDIGRDMLVNTNLWSGKAGGLVKDSENMEG 332
Query: 342 ------ILYEIMVLCSRFWKIIYRTKQLFLARTMQALVGGFGLGSVYVRVRKDEAGVAER 395
+ L R W + R L R +Q ++ +G +Y+ + GV
Sbjct: 333 IGYNASWWTQFYALLKRSWLSVLRDPLLLKVRLIQTMMTAILIGLIYLGQGLTQKGVQNI 392
Query: 396 LG-LFAFSLSFLLSSTVEALPIYLQERRVLMKEASREAYRISSYLIANTIVFLPFLFVVS 454
G LF F + + + ++ E V ++E YR+S+Y +A TI LP ++
Sbjct: 393 NGALFLFLTNMTFQNVFPVINVFTAELPVFLRETRSGLYRVSAYFLAKTIAELPLFIILP 452
Query: 455 LLFAIPVYWIVGLNPSIEAFVFFIFVVWLIVLMASSLVLFLSAISPDFISGNSLICTVLG 514
LF YW++GL F+ F+F+V L+ +A+S +S ++ +
Sbjct: 453 ALFTSITYWMIGLRSGATHFLTFLFLVTLVANVATSFGYLISCAFSSTSMALTVGPPFVI 512
Query: 515 AFFLFSGYFIPKEYIPKYWIFMYYISLYRYPLDSLLTNEYWSA--RGECFSWQKYNNVDG 572
F LF G+FI + IP Y+ ++ Y+S +RY + LL N+ WS EC S N G
Sbjct: 513 PFLLFGGFFINSDSIPVYFKWLSYLSWFRYGNEGLLINQ-WSDVDNIECTS----ANTTG 567
Query: 573 DHFSKCLLTGNDVLKSRGLEKDTRWVNVGVMLAFFLFYRVLCWIILSRRA 622
C +G +L++ ++++ ++ F+R+L + L R
Sbjct: 568 ----PCPSSGEVILETLSFRNADLYLDLIGLVILIFFFRLLAYFALRIRI 613
|
[Transport and binding proteins, Other]. Length = 617 |
| >gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Score = 194 bits (494), Expect = 1e-53
Identities = 165/596 (27%), Positives = 270/596 (45%), Gaps = 83/596 (13%)
Query: 86 ILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKKPA-QL 144
IL V+ A EILAV+GPSG+GKS+LL ++GR++ +F + N +KP Q+
Sbjct: 83 ILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANN----RKPTKQI 138
Query: 145 RKICGFVAQEDNLLPLLTVKETLMFSANFRL-KGMSHKEKEDRVESLMDELGLTHVAGSF 203
K GFV Q+D L P LTV+ETL+F + RL K ++ +EK ES++ ELGLT +
Sbjct: 139 LKRTGFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTI 198
Query: 204 VGDEENRGI---------------------------SGLDSTSALQVIELLASMAKAKQR 236
+G+ RGI SGLD+T+A +++ L S+A+ K +
Sbjct: 199 IGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQ-KGK 257
Query: 237 TVVLSIHQPSYRILQYISKFLILSRGSVVHYGSLELLEETINNLGYQIPTQLNAIEFAME 296
T+V S+HQPS R+ Q L+LS G + +G ++G+ +N +F ++
Sbjct: 258 TIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAMAYFESVGFSPSFPMNPADFLLD 317
Query: 297 IMH------------------PLEDSYSNNNNFLPSVEDA---EQFPDLRCEKVGGVEHQ 335
+ + L SY N P V+ A FP VG +
Sbjct: 318 LANGVCQTDGVSEREKPNVKQSLVASY--NTLLAPKVKAAIEMSHFPQANARFVGSASTK 375
Query: 336 QH---------AFFLILYEIMVLCSRFWKIIYRTKQLF-LARTMQALVGGFGLGSVYVRV 385
+H +F + +L R K R + F R Q + G ++
Sbjct: 376 EHRSSDRISISTWF---NQFSILLQRSLK--ERKHESFNTLRVFQVIAAALLAGLMW--W 428
Query: 386 RKDEAGVAERLGLFAF-SLSFLLSSTVEALPIYLQERRVLMKEASREAYRISSYLIANTI 444
D V +RLGL F S+ + + + ++ ++ QER + +KE + Y +SSY +A +
Sbjct: 429 HSDFRDVQDRLGLLFFISIFWGVFPSFNSVFVFPQERAIFVKERASGMYTLSSYFMARIV 488
Query: 445 VFLPFLFVVSLLFAIPVYWIVGLNPSIEAFVFFIFVVWLIVLMASSLVLFLSAISPDFIS 504
LP ++ +F YW+ GL P + AF+ + V+ VL++ L L L A D
Sbjct: 489 GDLPMELILPTIFLTVTYWMAGLKPELGAFLLTLLVLLGYVLVSQGLGLALGAAIMDAKK 548
Query: 505 GNSLICTVLGAFFLFSGYFIPKEYIPKYWIFMYYISLYRYPLDSLLTNEYWSARGECFSW 564
++++ + AF L G+++ K +P ++ YIS Y L+ +Y + S
Sbjct: 549 ASTIVTVTMLAFVLTGGFYVHK--LPSCMAWIKYISTTFYSYRLLINVQYGEGK-RISSL 605
Query: 565 QKYNNVDGDHFSKCLLTGNDVLKSRGLEKDTRWVNVGVMLAFFLFYRVLCWIILSR 620
+ G + C DV +V V++ F+ YR+L ++ L R
Sbjct: 606 LGCSLPHGSDRASCKFVEEDVAGQISP-----ATSVSVLIFMFVGYRLLAYLALRR 656
|
Length = 659 |
| >gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Score = 196 bits (501), Expect = 4e-53
Identities = 137/647 (21%), Positives = 258/647 (39%), Gaps = 101/647 (15%)
Query: 58 TVRNLSYAIQPNTSILSHLLHEPKVP-LHILKSVSFEARDSEILAVVGPSGTGKSSLLRI 116
T N ++ T L ILK + + E+ V+G G+G S+LL+
Sbjct: 49 TFPNA--LLKILTRGFRKLKKFRDTKTFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKT 106
Query: 117 ISGRVRDQDFDPRS-ITVNC---HQIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSA- 171
I+ IT + +IKK R + A+ D P LTV ETL F+A
Sbjct: 107 IASNTDGFHIGVEGVITYDGITPEEIKK--HYRGDVVYNAETDVHFPHLTVGETLDFAAR 164
Query: 172 ----NFRLKGMSHKEKEDRVESL-MDELGLTHVAGSFVGDEENRGISG------------ 214
R G+S +E + + M GL+H + VG++ RG+SG
Sbjct: 165 CKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEAS 224
Query: 215 ---------------LDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLIL 259
LDS +AL+ I L + A T +++I+Q S + K ++L
Sbjct: 225 LGGAKIQCWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVL 284
Query: 260 SRGSVVHYGSLELLEETINNLGYQIPTQLNAIEFAMEIMHP------------------- 300
G +++G + ++ +G++ P + +F + P
Sbjct: 285 YEGYQIYFGPADKAKQYFEKMGFKCPDRQTTADFLTSLTSPAERQIKPGYEKKVPRTPQE 344
Query: 301 LEDSYSNNNNFLPSVEDAEQFPDLRCEKVGGVE---------HQQHA---------FFLI 342
E + N+ + +++ ++ RC + E + F +
Sbjct: 345 FETYWRNSPEYAQLMKEIDE-YLDRCSESDTKEAYRESHVAKQSKRTRPSSPYTVSFSMQ 403
Query: 343 LYEIMVLCSRFWKIIYRTKQLFLARTMQALVGGFGLGSVYVRVRKDEAGVAERLGLFAFS 402
+ + +R + + L ++ L SV+ + K+ + R G F+
Sbjct: 404 VKYCL---ARNFLRMKGNPSFTLFMVFGNIIMALILSSVFYNLPKNTSDFYSRGGALFFA 460
Query: 403 LSF-LLSSTVEALPIYLQERRVLMKEASREAYRISSYLIANTIVFLPFLFVVSLLFAIPV 461
+ F SS +E +Y + R ++ K Y S+ IA+ I +PF + S++F I +
Sbjct: 461 ILFNAFSSLLEIASMY-EARPIVEKHRKYALYHPSADAIASIISEIPFKIIESVVFNIIL 519
Query: 462 YWIVGLNPSIEAFVFFIFVVWLIVLMASSLVLFLSAISPDFISGNSLICTVLGAFFLFSG 521
Y++V + F F++ ++++ L S L + A++ + +L A +++G
Sbjct: 520 YFMVNFRRTAGRFFFYLLILFICTLAMSHLFRSIGAVTKTLSEAMTPAAILLLALSIYTG 579
Query: 522 YFIPKEYIPKYWIFMYYISLYRYPLDSLLTNEYWSARGECF----SWQKYNNVDGDHFSK 577
+ IP+ + + ++YY++ Y +SL+ NE+ R EC S Y+N+ G
Sbjct: 580 FAIPRPSMLGWSKWIYYVNPLAYAFESLMVNEFHGRRFECSQYVPSGGGYDNL-GVTNKV 638
Query: 578 CLLT----------GNDVLK-SRGLEKDTRWVNVGVMLAFFLFYRVL 613
C + G+D LK S +W N G+++ F +F+ +
Sbjct: 639 CTVVGAEPGQDYVDGDDYLKLSFQYYNSHKWRNFGIIIGFTVFFFFV 685
|
[Transport and binding proteins, Other]. Length = 1394 |
| >gnl|CDD|216273 pfam01061, ABC2_membrane, ABC-2 type transporter | Back alignment and domain information |
|---|
Score = 150 bits (382), Expect = 4e-42
Identities = 66/213 (30%), Positives = 114/213 (53%), Gaps = 5/213 (2%)
Query: 344 YEIMVLCSRFWKIIYRTKQL-FLARTMQALVGGFGLGSVYVRVRKDEAGVAERLGLFAFS 402
++ L R + +R L L R +Q L+ G+V+ + G R GL FS
Sbjct: 1 TQLKALLKREFLRRWRDPSLGLLWRLIQPLLMALVFGTVFGNL-DTSLGGLNRPGLLFFS 59
Query: 403 LSFL-LSSTVEALPIYLQERRVLMKEASREAYRISSYLIANTIVFLPFLFVVSLLFAIPV 461
+ F SS P++++ER VL +E + Y S+Y++A +V LP + +++F + V
Sbjct: 60 ILFNAFSSLTGISPVFIRERGVLERELASPLYSPSAYVLAKILVELPISLLQAIIFLLIV 119
Query: 462 YWIVGLNPSIEAFVFFIFVVWLIVLMASSLVLFLSAISPDFISGNSLICTVLGAFFLFSG 521
Y++VGL S F F+ V+ L L AS L LF++A++P F + + +L L SG
Sbjct: 120 YFMVGLPVS--RFFLFLLVLLLTALAASGLGLFIAALAPSFEDASQIGPLLLLPLLLLSG 177
Query: 522 YFIPKEYIPKYWIFMYYISLYRYPLDSLLTNEY 554
+FIP + +P + ++YY++ Y +++L NE+
Sbjct: 178 FFIPVDSMPGWLQWIYYLNPLTYAIEALRANEF 210
|
Length = 210 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 141 bits (357), Expect = 8e-39
Identities = 84/214 (39%), Positives = 127/214 (59%), Gaps = 25/214 (11%)
Query: 57 VTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRI 116
++ RNL+ ++ + S K +LK+VS +A+ E+ A++GPSG GKS+LL
Sbjct: 4 LSFRNLTVTVKSSPS---------KSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNA 54
Query: 117 ISGRVRDQDFDPRSITVNCHQIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLK 176
++GR R + +N + K + RKI G+V Q+D L P LTV+ETLMF+A L+
Sbjct: 55 LAGR-RTGLGVSGEVLINGRPLDKRS-FRKIIGYVPQDDILHPTLTVRETLMFAAK--LR 110
Query: 177 GMSHKEKEDRVESLMDELGLT--HVAGSFVGDEENRGISGLDSTSALQVIELLASMAKAK 234
G+S E++ RV S+ EL ++ + DE SGLDS+SALQV+ LL +A
Sbjct: 111 GLSGGERK-RV-SIALEL-VSNPSL---LFLDEPT---SGLDSSSALQVMSLLRRLADT- 160
Query: 235 QRTVVLSIHQPSYRILQYISKFLILSRGSVVHYG 268
RT++ SIHQPS I + K L+LS+G V+++G
Sbjct: 161 GRTIICSIHQPSSEIFELFDKLLLLSQGRVIYFG 194
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 143 bits (362), Expect = 2e-38
Identities = 72/223 (32%), Positives = 109/223 (48%), Gaps = 35/223 (15%)
Query: 86 ILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKK-PAQL 144
L VSFE EI ++GP+G GK++LL+I++G ++ I V + + K PA++
Sbjct: 20 ALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSG---EILVLGYDVVKEPAKV 76
Query: 145 RKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAGSFV 204
R+ G+V QE +L P LTV+E L F A RL G+S +E E+R+E L++ GL A V
Sbjct: 77 RRRIGYVPQEPSLYPELTVRENLEFFA--RLYGLSKEEAEERIEELLELFGLEDKANKKV 134
Query: 205 G-------------------------DEENRGISGLDSTSALQVIELLASMAKAKQRTVV 239
DE SGLD S ++ ELL +AK T++
Sbjct: 135 RTLSGGMKQRLSIALALLHDPELLILDE---PTSGLDPESRREIWELLRELAKEGGVTIL 191
Query: 240 LSIHQPSYRILQYISKFLILSRGSVVHYGSLELLEETINNLGY 282
LS H + + +IL+ G ++ G+ E L+E G
Sbjct: 192 LSTHILE-EAEELCDRVIILNDGKIIAEGTPEELKEKFGGKGV 233
|
Length = 293 |
| >gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Score = 149 bits (377), Expect = 2e-37
Identities = 118/535 (22%), Positives = 220/535 (41%), Gaps = 68/535 (12%)
Query: 86 ILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKKPAQLR 145
IL +V + + A++G SG GK++LL +++ RV VN + Q
Sbjct: 778 ILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSFQ-- 835
Query: 146 KICGFVAQEDNLLPLLTVKETLMFSANFRL-KGMSHKEKEDRVESLMDELGLTHVAGSFV 204
+ G+V Q+D LP TV+E+L FSA R K +S EK + VE ++ L + A + V
Sbjct: 836 RSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVV 895
Query: 205 G------DEENR-----GI----------------SGLDSTSALQVIELLASMAKAKQRT 237
G + E R G+ SGLDS +A + +L+ +A Q
Sbjct: 896 GVPGEGLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQ-A 954
Query: 238 VVLSIHQPSYRILQYISKFLILSRGS-VVHYGSL-----ELLEETINNLGYQIPTQLNAI 291
++ +IHQPS + + + L+L +G V++G L ++ + + P N
Sbjct: 955 ILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDLGENSHTIINYFEKHGAPKCPEDANPA 1014
Query: 292 EFAMEIM------HPLED---------SYSNNNNFLPSVEDAEQFPDLRCEKVGGVEHQQ 336
E+ +E++ H +D Y N L +E + + +
Sbjct: 1015 EWMLEVIGAAPGAHANQDYHEVWRNSSEYQAVKNELDRLE--AELSKAEDDNDPDALSKY 1072
Query: 337 HAFFLILYEIMVLCSRFWKIIYRTKQLFLARTMQALVGGFGLGSVYVRVRKDEAGVAERL 396
A Y+ ++ R ++ +RT ++ + +G + +V G+ ++
Sbjct: 1073 AASLW--YQFKLVLWRTFQQYWRTPDYLYSKFFLTIFAALFIGFTFFKVGTSLQGLQNQM 1130
Query: 397 GLFAFSLSFLLSSTV--EALPIYLQERRVL-MKEASREAYRISSYLIANTIVFLPFLFVV 453
FA ++ +L + + + LP ++ +R + ++E + +++ A V +P+ V
Sbjct: 1131 --FAVFMATVLFNPLIQQYLPPFVAQRDLYEVRERPSRTFSWLAFIAAQITVEIPYNLVA 1188
Query: 454 SLLFAIPVYWIVGL-------NPSIEAFVFFIFVVWLIVLMASSLVLFLSAISPDFISGN 506
+F Y+ VG E V F + + L S+L + + +P+ +
Sbjct: 1189 GTIFFFIWYYPVGFYWNASKTGQVHERGVLFWLLSTMFFLYFSTLGQMVISFNPNADNAA 1248
Query: 507 SLICTVLGAFFLFSGYFIPKEYIPKYWIFMYYISLYRYPLDSLLTNEYWSARGEC 561
L + F G P +P +WIFMY S + Y + +LL+ C
Sbjct: 1249 VLASLLFTMCLSFCGVLAPPSRMPGFWIFMYRCSPFTYLVQALLSTGLADVPVTC 1303
|
[Transport and binding proteins, Other]. Length = 1394 |
| >gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily | Back alignment and domain information |
|---|
Score = 135 bits (342), Expect = 2e-36
Identities = 73/207 (35%), Positives = 110/207 (53%), Gaps = 26/207 (12%)
Query: 86 ILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKKPAQLR 145
IL VS +++A++G SG+GK++LL ISGRV I N KP Q +
Sbjct: 22 ILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPR-KPDQFQ 80
Query: 146 KICGFVAQEDNLLPLLTVKETLMFSANFRL-KGMSHKEKEDRVE-SLMDELGLTHVAGSF 203
K +V Q+D LLP LTV+ETL ++A RL + S ++ RVE L+ +L LT + G+
Sbjct: 81 KCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNL 140
Query: 204 V----GDEENR---GI---------------SGLDSTSALQVIELLASMAKAKQRTVVLS 241
V G E R + SGLDS +AL ++ L+ +A+ + R V+L+
Sbjct: 141 VKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLAR-RNRIVILT 199
Query: 242 IHQPSYRILQYISKFLILSRGSVVHYG 268
IHQP + + + L+LS G +V+ G
Sbjct: 200 IHQPRSDLFRLFDRILLLSSGEIVYSG 226
|
The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226 |
| >gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Score = 135 bits (341), Expect = 7e-33
Identities = 144/627 (22%), Positives = 275/627 (43%), Gaps = 115/627 (18%)
Query: 81 KVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPR-SITVNCHQIK 139
K L ILK S + S + ++GP +GK++LL ++G++ D IT N +++
Sbjct: 175 KTKLTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKL-DPSLKVSGEITYNGYRLN 233
Query: 140 K--PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFR--------LKGMSHKEK------ 183
+ P RK +++Q D + ++TVKETL FSA + L ++ +EK
Sbjct: 234 EFVP---RKTSAYISQNDVHVGVMTVKETLDFSARCQGVGTRYDLLSELARREKDAGIFP 290
Query: 184 EDRVESLMDE------------------LGLTHVAGSFVGDEENRGISG----------- 214
E V+ M LGL + VGDE RGISG
Sbjct: 291 EAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRGISGGQKKRVTTGEM 350
Query: 215 ----------------LDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLI 258
LDS++ Q+++ L + + TV++S+ QP+ ++
Sbjct: 351 IVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIIL 410
Query: 259 LSRGSVVHYGSLELLEETINNLGYQIPTQLNAIEFAMEIMHPL-EDSYSNNNN----FLP 313
LS G +V+ G + + E + G++ P + +F E+ ++ Y + N ++
Sbjct: 411 LSEGQIVYQGPRDHILEFFESCGFKCPERKGTADFLQEVTSKKDQEQYWADRNKPYRYIS 470
Query: 314 SVEDAEQFPD----LRCEKVGGV---EHQQHAFFLIL-------YEIMVLC-SRFWKIIY 358
E AE+F ++ E V + Q H L+ E++ C + W ++
Sbjct: 471 VSEFAERFKSFHVGMQLENELSVPFDKSQSHKAALVFSKYSVPKMELLKACWDKEWLLMK 530
Query: 359 RTKQLFLARTMQALVGGFGLGSVYVRVR---KDEAGVAERLGLFAFSLSF-------LLS 408
R +++ +T+Q ++ +V++R ++E A +G FS+ L+
Sbjct: 531 RNAFVYVFKTVQIIIVAAIASTVFLRTEMHTRNEEDGALYIGALLFSMIINMFNGFAELA 590
Query: 409 STVEALPIYLQERRVLMKEASREAYRISSYLIANTIVFLPFLFVVSLLFAIPVYWIVGLN 468
++ LP++ ++R +L + + ++L+ +P + S+++ + Y+ +G
Sbjct: 591 LMIQRLPVFYKQRDLLFHPPW--TFTLPTFLLG-----IPISIIESVVWVVITYYSIGFA 643
Query: 469 PSIEAFVFFIFVVWLIVLMASSLVLFLSAISPDFISGNSLICTVLGAFFLFSGYFIPKEY 528
P F + +V+LI MA+ + ++++ I N+ VL FL G+ +PK
Sbjct: 644 PEASRFFKQLLLVFLIQQMAAGIFRLIASVCRTMIIANTGGALVLLLVFLLGGFILPKGE 703
Query: 529 IPKYWIFMYYISLYRYPLDSLLTNEYWSARGECFSWQKYNNVDGDHFSKCLLTGNDVLKS 588
IP +W + Y++S Y ++L NE ++ R W N + D+ ++ G VL
Sbjct: 704 IPNWWEWAYWVSPLSYGFNALAVNEMFAPR-----WM--NKMASDNSTR---LGTAVLNI 753
Query: 589 RGL--EKDTRWVNVGVMLAFFLFYRVL 613
+ +K+ W+ VG +L F + + VL
Sbjct: 754 FDVFTDKNWYWIGVGALLGFTILFNVL 780
|
Length = 1470 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 104 bits (261), Expect = 2e-25
Identities = 63/205 (30%), Positives = 88/205 (42%), Gaps = 39/205 (19%)
Query: 73 LSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRII-------SGRVRDQD 125
LS + LK VS E +A+VGPSG+GKS+LL I+ SG VR
Sbjct: 6 LSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDG 65
Query: 126 FDPRSITVNCHQIKKPAQLR--KICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEK 183
D ++ K+ A R I GFV Q NLLP LT E + L G+ KE+
Sbjct: 66 TDISKLSE-----KELAAFRRRHI-GFVFQSFNLLPDLTALENVELPL--LLAGVPKKER 117
Query: 184 EDRVESLMDELGLTHVAGSFV----GDEENR-GI-----------------SGLDSTSAL 221
+R E L++ +GL + G ++ R I LDS +
Sbjct: 118 RERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALANDPKIILADEPTGNLDSETGK 177
Query: 222 QVIELLASMAKAKQRTVVLSIHQPS 246
+V+ELL + K T+V+ H P
Sbjct: 178 EVMELLRELNKEAGTTIVVVTHDPE 202
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 102 bits (257), Expect = 4e-25
Identities = 62/218 (28%), Positives = 107/218 (49%), Gaps = 31/218 (14%)
Query: 55 CKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLL 114
+T +NL+Y + +L ++S + + A++G SG GK++LL
Sbjct: 2 SVLTWKNLNYTVP-----------VKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLL 50
Query: 115 RIISGRVRDQDFDPRSITVNCHQIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFR 174
+++GR + I +N ++ G+V Q+D P LTV+E L FSA R
Sbjct: 51 DVLAGR-KTAGVITGEILIN--GRPLDKNFQRSTGYVEQQDVHSPNLTVREALRFSALLR 107
Query: 175 LKGMSHKEKEDRVESLMDELGLTHVAGS---FVGDEENRGISGLDSTSALQVIELLASMA 231
G+S ++++ R+ ++ EL A F+ DE SGLDS +A ++ L +A
Sbjct: 108 --GLSVEQRK-RL-TIGVEL----AAKPSILFL-DEPT---SGLDSQAAYNIVRFLKKLA 155
Query: 232 KAKQRTVVLSIHQPSYRILQYISKFLILSR-GSVVHYG 268
+ Q ++ +IHQPS I + + L+L R G V++G
Sbjct: 156 DSGQ-AILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 97.2 bits (243), Expect = 8e-23
Identities = 57/201 (28%), Positives = 84/201 (41%), Gaps = 48/201 (23%)
Query: 81 KVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISG---------RVRDQDFDPRSI 131
+ LK V+ E E +A+VGPSG+GKS+LL ++ G + +D S
Sbjct: 15 GEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLS- 73
Query: 132 TVNCHQIKKPAQLR-KICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESL 190
K+ A+LR K GFV Q NLLP LTV E + G S ++ E L
Sbjct: 74 ------EKELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIA--GKSAGRRKRAAEEL 125
Query: 191 MDELGLTHVAGS--------------------------FVGDEENRGISGLDSTSALQVI 224
++ LGL + DE LDS +A +V+
Sbjct: 126 LEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADEP---TGNLDSKTAKEVL 182
Query: 225 ELLASMAKAKQRTVVLSIHQP 245
ELL + K + +T+++ H P
Sbjct: 183 ELLRELNKERGKTIIMVTHDP 203
|
Length = 226 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 97.3 bits (243), Expect = 1e-22
Identities = 62/229 (27%), Positives = 110/229 (48%), Gaps = 38/229 (16%)
Query: 86 ILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQI--KKPAQ 143
LK V+ E E++A++GPSG GKS+LLR ++G V D I N QI K +
Sbjct: 19 ALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLV---DPTSGEILFNGVQITKLKGKE 75
Query: 144 LRKI---CGFVAQEDNLLPLLTVKETLMFS-----ANFR-LKGMSHKEKEDRVESLMDEL 194
LRK+ G + Q+ NL+P L+V E ++ + +R L G+ KE + + ++ +
Sbjct: 76 LRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERV 135
Query: 195 GLTHVA----GSFVGDEENRG------------------ISGLDSTSALQVIELLASMAK 232
G+ A + G ++ R ++ LD SA +V+++L + +
Sbjct: 136 GILDKAYQRASTLSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQ 195
Query: 233 AKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGSL-ELLEETINNL 280
TV++++HQ +Y + + L G +V G EL +E ++ +
Sbjct: 196 EDGITVIVNLHQVDL-AKKYADRIIGLKAGRIVFDGPASELTDEALDEI 243
|
Length = 258 |
| >gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A | Back alignment and domain information |
|---|
Score = 96.4 bits (241), Expect = 1e-22
Identities = 62/228 (27%), Positives = 97/228 (42%), Gaps = 54/228 (23%)
Query: 80 PKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRS--ITVNCHQ 137
K + +S EI ++G +G GK++ L++++G +R P S +N +
Sbjct: 11 KKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELR-----PTSGTAYINGYS 65
Query: 138 IKK-PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGL 196
I+ R+ G+ Q D L LTV+E L F A RLKG+ E ++ VE L+ LGL
Sbjct: 66 IRTDRKAARQSLGYCPQFDALFDELTVREHLRFYA--RLKGLPKSEIKEEVELLLRVLGL 123
Query: 197 TH------------------VAGSFVG-------DEENRGISGLDSTSALQVIELLASMA 231
T +A + +G DE SGLD S + +L+ +
Sbjct: 124 TDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEPT---SGLDPASRRAIWDLILEV- 179
Query: 232 KAKQRTVVLSIHQP------SYRILQYISKFLILSRGSVVHYGS-LEL 272
K R+++L+ H RI I+S G + GS EL
Sbjct: 180 -RKGRSIILTTHSMDEAEALCDRI-------AIMSDGKLRCIGSPQEL 219
|
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220 |
| >gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 93.5 bits (233), Expect = 7e-22
Identities = 62/219 (28%), Positives = 108/219 (49%), Gaps = 27/219 (12%)
Query: 57 VTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRI 116
++ RN+S+ S + ILK S + E++ V+G G+G S+LL+
Sbjct: 4 LSWRNISFTTGKGRSKIP-----------ILKDFSGVVKPGEMVLVLGRPGSGCSTLLKA 52
Query: 117 ISGRVRDQDFDPRSITVNCHQIKKPA-QLRKICGFVAQEDNLLPLLTVKETLMFSANFR- 174
++ R I N K+ A + +V++ED P LTV+ETL F+ +
Sbjct: 53 LANRTEGNVSVEGDIHYNGIPYKEFAEKYPGEIIYVSEEDVHFPTLTVRETLDFALRCKG 112
Query: 175 ---LKGMSHKEKEDRVESLMDELGLTHVAGSFVG--DEENRGISGLDSTSALQVIELLAS 229
++G+S E++ RV S+ + L V+ + V D RG LDS++AL++++ + +
Sbjct: 113 NEFVRGISGGERK-RV-SIAEAL----VSRASVLCWDNSTRG---LDSSTALEILKCIRT 163
Query: 230 MAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYG 268
MA + T +S++Q S I K L+L G ++YG
Sbjct: 164 MADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 91.5 bits (228), Expect = 8e-21
Identities = 63/230 (27%), Positives = 107/230 (46%), Gaps = 38/230 (16%)
Query: 85 HILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQI-----K 139
LK VS E +A++GPSG GKS+LLR ++G V S+ ++ I K
Sbjct: 15 KALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEP---TSGSVLIDGTDINKLKGK 71
Query: 140 KPAQLRKICGFVAQEDNLLPLLTVKETLMFSA-----NFR-LKGMSHKEKEDRVESLMDE 193
QLR+ G + Q+ NL+ L+V E ++ +R L G+ KE++ R + ++
Sbjct: 72 ALRQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALER 131
Query: 194 LGLTHVA----GSFVGDEENR-GI-----------------SGLDSTSALQVIELLASMA 231
+GL A G ++ R I + LD S+ QV++LL +
Sbjct: 132 VGLLDKAYQRADQLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRIN 191
Query: 232 KAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYG-SLELLEETINNL 280
+ + TV++S+HQ +Y + + L G +V G EL +E ++ +
Sbjct: 192 REEGITVIVSLHQVDL-AREYADRIVGLKDGRIVFDGPPAELTDEVLDEI 240
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 91.9 bits (229), Expect = 8e-21
Identities = 66/233 (28%), Positives = 99/233 (42%), Gaps = 43/233 (18%)
Query: 86 ILKSVSFEARDSEILAVVGPSGTGKSSLLRII-------SGRVRDQDFDPRSITVNCHQI 138
IL +SF EI ++GP+G+GKS+LL+ + SG V D S+
Sbjct: 17 ILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASL------- 69
Query: 139 KKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDR--VESLMDELGL 196
P +L K +V Q + LTV E ++ L KED VE ++ LGL
Sbjct: 70 -SPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGL 128
Query: 197 THVAGSFV----GDEENR-----------GI-------SGLDSTSALQVIELLASMAKAK 234
H+A V G E R I S LD ++V+ELL + + K
Sbjct: 129 EHLADRPVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREK 188
Query: 235 QRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGSLE--LLEETINNLGYQIP 285
TVV+ +H + +Y ++L G +V G+ E L EE + + Y +
Sbjct: 189 GLTVVMVLHDLNL-AARYADHLILLKDGKIVAQGTPEEVLTEENLREV-YGVD 239
|
Length = 258 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 89.0 bits (222), Expect = 1e-20
Identities = 53/190 (27%), Positives = 86/190 (45%), Gaps = 40/190 (21%)
Query: 85 HILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRS--ITVNCHQIKK-P 141
L +S EI ++GP+G GK++L++II G ++ P S I V IKK P
Sbjct: 14 TALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLK-----PDSGEIKVLGKDIKKEP 68
Query: 142 AQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAG 201
++++ G++ +E +L LTV+E L S GM + L L A
Sbjct: 69 EEVKRRIGYLPEEPSLYENLTVRENLKLS-----GGMKQR------------LAL---AQ 108
Query: 202 SFVGDEENRGI-------SGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYIS 254
+ + D E + SGLD S + ELL + K + +T++LS H +
Sbjct: 109 ALLHDPE---LLILDEPTSGLDPESRREFWELLRELKK-EGKTILLSSHILE-EAERLCD 163
Query: 255 KFLILSRGSV 264
+ IL+ G +
Sbjct: 164 RVAILNNGRI 173
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters | Back alignment and domain information |
|---|
Score = 90.2 bits (225), Expect = 2e-20
Identities = 42/133 (31%), Positives = 67/133 (50%), Gaps = 12/133 (9%)
Query: 73 LSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRS-- 130
+S + L+ +S + E +A+VGPSG GKS+LLRII+G R P S
Sbjct: 6 VSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLER-----PTSGE 60
Query: 131 ITVNCHQIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESL 190
+ V+ + P G+V Q+D LLP LTV + + L+G+ E +R E L
Sbjct: 61 VLVDGEPVTGP---GPDRGYVFQQDALLPWLTVLDNVALG--LELQGVPKAEARERAEEL 115
Query: 191 MDELGLTHVAGSF 203
++ +GL+ ++
Sbjct: 116 LELVGLSGFENAY 128
|
NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters | Back alignment and domain information |
|---|
Score = 87.2 bits (217), Expect = 2e-19
Identities = 41/125 (32%), Positives = 69/125 (55%), Gaps = 8/125 (6%)
Query: 83 PLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKKP- 141
H+LK + + E++ ++GPSG+GKS+LLR I+ D +I ++ ++
Sbjct: 12 DFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEE---PDSGTIIIDGLKLTDDK 68
Query: 142 ---AQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTH 198
+LR+ G V Q+ NL P LTV E + A ++KGMS E E+R L++++GL
Sbjct: 69 KNINELRQKVGMVFQQFNLFPHLTVLENITL-APIKVKGMSKAEAEERALELLEKVGLAD 127
Query: 199 VAGSF 203
A ++
Sbjct: 128 KADAY 132
|
HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213 |
| >gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 87.5 bits (217), Expect = 2e-19
Identities = 61/235 (25%), Positives = 105/235 (44%), Gaps = 40/235 (17%)
Query: 73 LSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSIT 132
++ L + ++ VSFEA + EI ++G +G GK++LLR+I+ + D +T
Sbjct: 4 VTDLTKSYGSKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIP---DSGKVT 60
Query: 133 VN-CHQIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLM 191
++ ++ P+ +R+ G + E L LT +E L + A RL G+S KE + R+ L
Sbjct: 61 IDGVDTVRDPSFVRRKIGVLFGERGLYARLTARENLKYFA--RLNGLSRKEIKARIAELS 118
Query: 192 DELGLTHVAGSFVGDEENRGI-----------------------SGLDSTSALQVIELLA 228
L L VG E + G+ SGLD + + + +
Sbjct: 119 KRLQLLEYLDRRVG-EFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIK 177
Query: 229 SMAKAKQRTVVLSIHQPSYRILQYISK----FLILSRGSVVHYGSLELLEETINN 279
+ K + R V+ S H I+Q + ++L +G VV GS+E L+
Sbjct: 178 QL-KNEGRAVIFSSH-----IMQEVEALCDRVIVLHKGEVVLEGSIEALDARTVL 226
|
Length = 245 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 85.6 bits (213), Expect = 6e-19
Identities = 51/208 (24%), Positives = 91/208 (43%), Gaps = 44/208 (21%)
Query: 86 ILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQD----FDPRSITVNCHQIKKP 141
L +S + E + +VGP+G+GKS+LLR+++G + D + +T
Sbjct: 16 ALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTK-----LSL 70
Query: 142 AQLRKICGFVAQ--EDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTH- 198
+LR+ G V Q +D TV+E + F G+ +E E+RVE ++ +GL
Sbjct: 71 KELRRKVGLVFQNPDDQFF-GPTVEEEVAFG--LENLGLPEEEIEERVEEALELVGLEGL 127
Query: 199 -----------------VAGSFVG-------DEENRGISGLDSTSALQVIELLASMAKAK 234
+AG DE +GLD +++ELL + KA+
Sbjct: 128 RDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDEP---TAGLDPAGRRELLELLKKL-KAE 183
Query: 235 QRTVVLSIHQPSYRILQYISKFLILSRG 262
+T+++ H +L+ + ++L G
Sbjct: 184 GKTIIIVTHDLDL-LLELADRVIVLEDG 210
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 85.0 bits (211), Expect = 1e-18
Identities = 62/233 (26%), Positives = 105/233 (45%), Gaps = 39/233 (16%)
Query: 85 HILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQI-----K 139
LK+++ E +A++GPSG GKS+LLR I+ V SI + I K
Sbjct: 16 QALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEP---SSGSILLEGTDITKLRGK 72
Query: 140 KPAQLRKICGFVAQEDNLLPLLTVKETLM-----FSANFR-LKGMSHKEKEDRVESLMDE 193
K +LR+ G + Q NL+ LTV E ++ + +R L G +E ++R S ++
Sbjct: 73 KLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALER 132
Query: 194 LGLTHVAGSFV----GDEENR------------------GISGLDSTSALQVIELLASMA 231
+GL A G ++ R I+ LD ++ QV++ L +
Sbjct: 133 VGLADKAYQRADQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRIN 192
Query: 232 KAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYG-SLELLEETINNLGYQ 283
K TV++++HQ +Y + + L G +V G EL +E + ++ Y
Sbjct: 193 KEDGITVIINLHQVDL-AKKYADRIVGLKAGEIVFDGAPSELDDEVLRHI-YG 243
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243 |
| >gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 84.5 bits (210), Expect = 2e-18
Identities = 41/123 (33%), Positives = 68/123 (55%), Gaps = 7/123 (5%)
Query: 84 LHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQI---KK 140
+LK +S E++ ++GPSG+GKS+LLR ++G D SITV+ + K
Sbjct: 15 KEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEE---PDSGSITVDGEDVGDKKD 71
Query: 141 PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVA 200
+LR+ G V Q+ NL P LTV E + A ++K +S E ++ L++++GL A
Sbjct: 72 ILKLRRKVGMVFQQFNLFPHLTVLENVTL-APVKVKKLSKAEAREKALELLEKVGLADKA 130
Query: 201 GSF 203
++
Sbjct: 131 DAY 133
|
Length = 240 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 82.2 bits (204), Expect = 7e-18
Identities = 54/213 (25%), Positives = 87/213 (40%), Gaps = 42/213 (19%)
Query: 85 HILKSVSFEARDSEILAVVGPSGTGKSSLLRII-------SGRVRDQDFDPRSITVNCHQ 137
L +S E LA++GPSG GK++LLR+I SG + D R +T
Sbjct: 14 RALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEIL---IDGRDVT----- 65
Query: 138 IKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLT 197
P + R I G V Q+ L P LTV E + F +L+G+ E RV L++ +GL
Sbjct: 66 -GVPPERRNI-GMVFQDYALFPHLTVAENIAFG--LKLRGVPKAEIRARVRELLELVGLE 121
Query: 198 HVAGSFV----GDEENR-GI-----------------SGLDSTSALQVIELLASMAKAKQ 235
+ + G ++ R + S LD+ ++ E L + +
Sbjct: 122 GLLNRYPHELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKELQRELG 181
Query: 236 RTVVLSIHQPSYRILQYISKFLILSRGSVVHYG 268
T + H L + +++ G +V G
Sbjct: 182 ITTIYVTHDQE-EALALADRIAVMNEGRIVQVG 213
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 84.6 bits (210), Expect = 8e-18
Identities = 55/216 (25%), Positives = 93/216 (43%), Gaps = 33/216 (15%)
Query: 83 PLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQI---- 138
+ L VS E EI ++G SG GKS+LLR+I+ + S+ V+ +
Sbjct: 18 TVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLL---ERPTSGSVFVDGQDLTALS 74
Query: 139 -KKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLT 197
+ QLR+ G + Q NLL TV E + F L G+ E + RV L++ +GL+
Sbjct: 75 EAELRQLRQKIGMIFQHFNLLSSRTVFENVAFP--LELAGVPKAEIKQRVAELLELVGLS 132
Query: 198 HVAGSF-----VGDEENRGI-----------------SGLDSTSALQVIELLASMAKAKQ 235
A + G ++ I S LD + ++ELL + +
Sbjct: 133 DKADRYPAQLSGGQKQRVAIARALANNPKILLCDEATSALDPETTQSILELLKDINRELG 192
Query: 236 RTVVLSIHQPSYRILQYISKFLILSRGSVVHYGSLE 271
T+VL H+ + + + +L +G +V G++
Sbjct: 193 LTIVLITHEMEV-VKRICDRVAVLDQGRLVEEGTVS 227
|
Length = 339 |
| >gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system | Back alignment and domain information |
|---|
Score = 81.6 bits (202), Expect = 1e-17
Identities = 59/218 (27%), Positives = 92/218 (42%), Gaps = 38/218 (17%)
Query: 79 EPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQ----DFDPRSITVN 134
E ++P LK + F+ + E+ + G SG GKS+LLR I+G + + + +
Sbjct: 7 EKRLPDFTLK-IDFDL-NEEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDS 64
Query: 135 CHQIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDEL 194
+I P Q RKI G V Q+ L P L V+E L F LK ++E V+ L+D L
Sbjct: 65 RKKINLPPQQRKI-GLVFQQYALFPHLNVRENLAFG----LKRKRNREDRISVDELLDLL 119
Query: 195 GLTHVAGSFV----GDEENR------------------GISGLDSTSALQVIELLASMAK 232
GL H+ + G E+ R S LD LQ++ L + K
Sbjct: 120 GLDHLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKK 179
Query: 233 AKQRTVVLSIHQPS--YRILQYISKFLILSRGSVVHYG 268
V+ H S + I +++ G + + G
Sbjct: 180 NLNIPVIFVTHDLSEAEYLADRI---VVMEDGRLQYIG 214
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214 |
| >gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 81.8 bits (203), Expect = 2e-17
Identities = 35/120 (29%), Positives = 61/120 (50%), Gaps = 8/120 (6%)
Query: 84 LHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKKPAQ 143
+ +L+ ++ E +A++GPSG GKS+LLR+I+G + + ++ + P
Sbjct: 16 VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTS---GEVLLDGRPVTGP-- 70
Query: 144 LRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAGSF 203
G+V QED LLP LTV + + L+G S E +R + L++ +GL +
Sbjct: 71 -GPDIGYVFQEDALLPWLTVLDNVALGL--ELRGKSKAEARERAKELLELVGLAGFEDKY 127
|
Length = 248 |
| >gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Score = 78.4 bits (194), Expect = 1e-16
Identities = 56/209 (26%), Positives = 96/209 (45%), Gaps = 36/209 (17%)
Query: 85 HILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRS--ITVNCHQIKK-P 141
L VS + ++GP+G GK++L+RI++ P S I ++ + K P
Sbjct: 14 RALDGVSLTL-GPGMYGLLGPNGAGKTTLMRILATLTP-----PSSGTIRIDGQDVLKQP 67
Query: 142 AQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVA- 200
+LR+ G++ QE + P TV+E L + A LKG+ KE + RV+ +++ + L A
Sbjct: 68 QKLRRRIGYLPQEFGVYPNFTVREFLDYIA--WLKGIPSKEVKARVDEVLELVNLGDRAK 125
Query: 201 ---GSFVGDEENR-GIS-----------------GLDSTSALQVIELLASMAKAKQRTVV 239
GS G R GI+ GLD ++ LL+ + + R V+
Sbjct: 126 KKIGSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSEL--GEDRIVI 183
Query: 240 LSIHQPSYRILQYISKFLILSRGSVVHYG 268
LS H + ++ +L++G +V G
Sbjct: 184 LSTHIVE-DVESLCNQVAVLNKGKLVFEG 211
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter | Back alignment and domain information |
|---|
Score = 77.8 bits (192), Expect = 3e-16
Identities = 56/219 (25%), Positives = 96/219 (43%), Gaps = 44/219 (20%)
Query: 80 PKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQI- 138
K + + VSF + E+ ++GP+G GK++ LR+++G + D TV+ +
Sbjct: 14 VKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEP---DAGFATVDGFDVV 70
Query: 139 KKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTH 198
K+PA+ R+ GFV+ L LT +E L + A L G+ E R+E L D LG+
Sbjct: 71 KEPAEARRRLGFVSDSTGLYDRLTARENLEYFA--GLYGLKGDELTARLEELADRLGMEE 128
Query: 199 VAGSFVG-------------------------DEENRGISGLDSTSALQVIELLASMAKA 233
+ VG DE G+ + + + + I L +A
Sbjct: 129 LLDRRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQL----RA 184
Query: 234 KQRTVVLSIHQPSYRILQYIS----KFLILSRGSVVHYG 268
+ ++ S H I+Q + + ++L RG VV+ G
Sbjct: 185 LGKCILFSTH-----IMQEVERLCDRVVVLHRGRVVYEG 218
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 80.0 bits (198), Expect = 4e-16
Identities = 41/123 (33%), Positives = 61/123 (49%), Gaps = 19/123 (15%)
Query: 85 HILKSVSFEARDSEILAVVGPSGTGKSSLLRII-------SGRVRDQDFDPRSITVNCHQ 137
+LK V+ + D E + ++GPSG GKS+LLR+I SG + D R +T
Sbjct: 17 EVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEIL---IDGRDVT----- 68
Query: 138 IKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLT 197
P + R I V Q L P +TV E + F +L+G+ E + RV+ + LGL
Sbjct: 69 -DLPPEKRGI-AMVFQNYALYPHMTVYENIAFGL--KLRGVPKAEIDKRVKEVAKLLGLE 124
Query: 198 HVA 200
H+
Sbjct: 125 HLL 127
|
Length = 338 |
| >gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents | Back alignment and domain information |
|---|
Score = 77.9 bits (193), Expect = 4e-16
Identities = 59/230 (25%), Positives = 95/230 (41%), Gaps = 50/230 (21%)
Query: 85 HILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIK----K 140
+LK V + R EILA++GPSG+GKS+LLR+I G +R P S V
Sbjct: 14 TVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLR-----PDSGEVLIDGEDISGLS 68
Query: 141 PAQLRKI---CGFVAQEDNLLPLLTVKETLMF--SANFRLKGMSHKEKEDRVESLMDELG 195
A+L ++ G + Q L LTV E + F + RL S +E + V ++ +G
Sbjct: 69 EAELYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHTRL---SEEEIREIVLEKLEAVG 125
Query: 196 LTHVAGSFVG-------------------------DEENRGISGLDSTSALQVIELLASM 230
L + DE +GLD ++ + +L+ S+
Sbjct: 126 LRGAEDLYPAELSGGMKKRVALARALALDPELLLYDEPT---AGLDPIASGVIDDLIRSL 182
Query: 231 AKAKQRTVVLSIHQ--PSYRILQYISKFLILSRGSVVHYGSLELLEETIN 278
K T ++ H ++ I I +L G +V G+ E L + +
Sbjct: 183 KKELGLTSIMVTHDLDTAFAIADRI---AVLYDGKIVAEGTPEELRASDD 229
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 78.6 bits (194), Expect = 7e-16
Identities = 46/217 (21%), Positives = 94/217 (43%), Gaps = 36/217 (16%)
Query: 87 LKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQI-KKPAQLR 145
+ V+F+ R+ E+ +GP+G GK++ +R+++ +R + V + + ++P ++R
Sbjct: 9 VDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRP---TSGTARVAGYDVVREPRKVR 65
Query: 146 KICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAGSFVG 205
+ G V Q ++ LT +E L RL G+ E E+R E L++ L A VG
Sbjct: 66 RSIGIVPQYASVDEDLTGRENLEMMG--RLYGLPKDEAEERAEELLELFELGEAADRPVG 123
Query: 206 -------------------------DEENRGISGLDSTSALQVIELLASMAKAKQRTVVL 240
DE +GLD + + + + ++ + T++L
Sbjct: 124 TYSGGMRRRLDIAASLIHQPDVLFLDEPT---TGLDPRTRRAIWDYIRALKEEGV-TILL 179
Query: 241 SIHQPSYRILQYISKFLILSRGSVVHYGSLELLEETI 277
+ H + + I+ G ++ G+ E L+ +
Sbjct: 180 TTHY-MEEADKLCDRIAIIDHGRIIAEGTPEELKRRL 215
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302 |
| >gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter | Back alignment and domain information |
|---|
Score = 76.5 bits (189), Expect = 1e-15
Identities = 58/231 (25%), Positives = 95/231 (41%), Gaps = 43/231 (18%)
Query: 73 LSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRII-------SGRVRDQD 125
+S + + + LK VS EI ++G SG GKS+L+R I SG V
Sbjct: 7 VSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDG 66
Query: 126 FDPRSITVNCHQIKKPAQLRKI---CGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKE 182
D + +LRK G + Q NLL TV E + + G+ E
Sbjct: 67 TDLTLL--------SGKELRKARRRIGMIFQHFNLLSSRTVFENVALP--LEIAGVPKAE 116
Query: 183 KEDRVESLMDELGLTHVAGSF----VGDEENR-GI-----------------SGLDSTSA 220
E+RV L++ +GL A ++ G ++ R GI S LD +
Sbjct: 117 IEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPKVLLCDEATSALDPETT 176
Query: 221 LQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGSLE 271
++ LL + + T+VL H+ + + + ++ +G VV G++E
Sbjct: 177 QSILALLRDINRELGLTIVLITHEMEV-VKRICDRVAVMEKGEVVEEGTVE 226
|
MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 76.0 bits (188), Expect = 1e-15
Identities = 53/236 (22%), Positives = 90/236 (38%), Gaps = 54/236 (22%)
Query: 73 LSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRII-------SGRVRDQD 125
LS + L VSF + E L +VG SG+GKS+L R I SG +
Sbjct: 7 LSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSII--- 63
Query: 126 FDPRSITVNCHQIKKPAQLRKICG----FVAQE--DNLLPLLTVKETLMFSANFRLKGMS 179
FD + + K +LRKI V Q+ +L P +T+ E + K
Sbjct: 64 FDGKDLL------KLSRRLRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSK 117
Query: 180 HKEKEDRVESLMDELGL-THVAGSF-------------------------VGDEENRGIS 213
+ +++ V L+ +GL V + + DE S
Sbjct: 118 KEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARALALNPKLLIADEP---TS 174
Query: 214 GLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYIS-KFLILSRGSVVHYG 268
LD + Q+++LL + + T++ H ++ I+ + ++ G +V G
Sbjct: 175 ALDVSVQAQILDLLKKLQEELGLTLLFITHDLG--VVAKIADRVAVMYAGKIVEEG 228
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Score = 80.3 bits (198), Expect = 2e-15
Identities = 48/207 (23%), Positives = 95/207 (45%), Gaps = 8/207 (3%)
Query: 354 WKIIYRTKQLFLARTMQALVGGFGLGSVYVRV---RKDEAGVAERLGLFAFSLSFL---L 407
W +R+ L R L +G+++ +V R + + +G ++ F+
Sbjct: 1203 WWTYWRSPDYNLVRFFFTLAAALMVGTIFWKVGTKRSNANDLTMVIGAMYAAVLFVGINN 1262
Query: 408 SSTVEALPIYLQERRVLMKEASREAYRISSYLIANTIVFLPFLFVVSLLFAIPVYWIVGL 467
STV+ P+ ER V +E + Y Y IA + +P++ + + + + VY +V
Sbjct: 1263 CSTVQ--PMVAVERTVFYRERAAGMYSALPYAIAQVVCEIPYVLIQTTYYTLIVYAMVAF 1320
Query: 468 NPSIEAFVFFIFVVWLIVLMASSLVLFLSAISPDFISGNSLICTVLGAFFLFSGYFIPKE 527
+ F +F F+ + L + + +++P+ G F LFSG+FIP+
Sbjct: 1321 EWTAAKFFWFYFISFFSFLYFTYYGMMTVSLTPNQQVAAIFAAAFYGLFNLFSGFFIPRP 1380
Query: 528 YIPKYWIFMYYISLYRYPLDSLLTNEY 554
IPK+W++ Y+I + + L+ ++Y
Sbjct: 1381 KIPKWWVWYYWICPVAWTVYGLIVSQY 1407
|
Length = 1470 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 73.4 bits (181), Expect = 3e-15
Identities = 53/176 (30%), Positives = 75/176 (42%), Gaps = 39/176 (22%)
Query: 85 HILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRS-------ITVNCHQ 137
+L VS EI+A++GPSG+GKS+LLR I+G P S + +
Sbjct: 14 TVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEE-----PDSGSILIDGEDLTDLE 68
Query: 138 IKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRV---ESLMDE- 193
+ P R+I G V Q+ L P LTV E + G+S +++ RV +L +
Sbjct: 69 DELPPLRRRI-GMVFQDFALFPHLTVLENIAL-------GLSGGQQQ-RVALARALAMDP 119
Query: 194 --LGLTHVAGSFVGDEENRGISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSY 247
L L DE S LD + +V LL S+ TVVL H
Sbjct: 120 DVLLL---------DEP---TSALDPITRREVRALLKSLQAQLGITVVLVTHDLDE 163
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 73.2 bits (181), Expect = 4e-15
Identities = 50/242 (20%), Positives = 88/242 (36%), Gaps = 93/242 (38%)
Query: 58 TVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRII 117
V NLS T +L +S EI+ ++GP+G GKS+LL+ +
Sbjct: 1 EVENLSVGYGGRT---------------VLDDLSLSIEAGEIVGILGPNGAGKSTLLKTL 45
Query: 118 SGRVRDQDFDPRS--ITVNCHQIK--KPAQLRKICGFVAQEDNLLPLLTVKETLMFSANF 173
+G ++ P S I ++ + P +L + +V Q
Sbjct: 46 AGLLK-----PSSGEILLDGKDLASLSPKELARKIAYVPQ-------------------- 80
Query: 174 RLKGMSHKEKEDRVESLMDELGLTHVAGSFVGDEENRGISG------------------- 214
++ LGL H+A + +SG
Sbjct: 81 ----------------ALELLGLAHLADRPFNE-----LSGGERQRVLLARALAQEPPIL 119
Query: 215 -LD-STSAL------QVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVH 266
LD TS L +++ELL +A+ + +TVV+ +H + +Y + ++L G +V
Sbjct: 120 LLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLN-LAARYADRVILLKDGRIVA 178
Query: 267 YG 268
G
Sbjct: 179 QG 180
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 73.6 bits (182), Expect = 7e-15
Identities = 59/220 (26%), Positives = 97/220 (44%), Gaps = 39/220 (17%)
Query: 84 LHILKSVSFEARDSEILAVVGPSGTGKSSLLRII-------SGRVRDQDFDPRSIT-VNC 135
IL VS + EI+A++G +G GK++LL+ I SG +R FD R IT +
Sbjct: 13 SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIR---FDGRDITGLPP 69
Query: 136 HQIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELG 195
H+ R G+V + + P LTV+E L+ A R + K + +RV L L
Sbjct: 70 HER-----ARAGIGYVPEGRRIFPELTVEENLLLGAYARRRA-KRKARLERVYELFPRLK 123
Query: 196 --LTHVAGSFVGDEEN-----RGISG------LDS-TSAL------QVIELLASMAKAKQ 235
+AG+ G E+ R + LD + L ++ E + + + +
Sbjct: 124 ERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIREL-RDEG 182
Query: 236 RTVVLSIHQPSYRILQYISKFLILSRGSVVHYGSLELLEE 275
T++L + Q + L+ + +L RG VV G+ L
Sbjct: 183 VTILL-VEQNARFALEIADRAYVLERGRVVLEGTAAELLA 221
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 74.0 bits (182), Expect = 8e-15
Identities = 55/199 (27%), Positives = 93/199 (46%), Gaps = 27/199 (13%)
Query: 73 LSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSIT 132
LS + + + L ILK V + E +A+VGPSG+GKS+LL +++G + R +
Sbjct: 12 LSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLG 71
Query: 133 VNCHQIKKP--AQLR-KICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVES 189
H++ + A LR + GFV Q +L+P LT E + L+G S + ++
Sbjct: 72 QPLHKLDEDARAALRARHVGFVFQSFHLIPNLTALENVALPL--ELRGESSADSRAGAKA 129
Query: 190 LMDELGL----THVAGSFVGDEEN-----RGISG-------------LDSTSALQVIELL 227
L++ +GL TH G E+ R +G LD + ++ +LL
Sbjct: 130 LLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLL 189
Query: 228 ASMAKAKQRTVVLSIHQPS 246
++ + + T+VL H P
Sbjct: 190 FALNRERGTTLVLVTHDPQ 208
|
Length = 228 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 73.4 bits (181), Expect = 1e-14
Identities = 49/212 (23%), Positives = 96/212 (45%), Gaps = 32/212 (15%)
Query: 86 ILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVN---CHQIKKPA 142
LK VS E E + ++GP+G+GKS+LL++++G ++ + V+ K
Sbjct: 19 ALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPT---SGEVLVDGLDTSSEKSLL 75
Query: 143 QLRKICGFVAQE-DNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVA- 200
+LR+ G V Q D+ L TV++ + F G+ +E E+RV ++ +GL +
Sbjct: 76 ELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENL--GLPREEIEERVAEALELVGLEELLD 133
Query: 201 ---GSFVGDEENRG------------------ISGLDSTSALQVIELLASMAKAKQRTVV 239
+ G ++ R +GLD +++ELL + + +T++
Sbjct: 134 RPPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTII 193
Query: 240 LSIHQPSYRILQYISKFLILSRGSVVHYGSLE 271
+ H +L+Y + ++L G ++ G
Sbjct: 194 IVTHDLEL-VLEYADRVVVLDDGKILADGDPA 224
|
Length = 235 |
| >gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 72.5 bits (179), Expect = 3e-14
Identities = 52/225 (23%), Positives = 93/225 (41%), Gaps = 45/225 (20%)
Query: 83 PLHILKSVSFEARDSEILAVVGPSGTGKSSLLRII-------SGRVRDQDFDPRSIT-VN 134
+ L+ VS E EI+A++G +G GK++LL+ I SGR+ FD IT +
Sbjct: 15 KIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRII---FDGEDITGLP 71
Query: 135 CHQIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKE-DRVESLMDE 193
H+ + I +V + + P LTV+E L+ A + + +E++ + V L
Sbjct: 72 PHERAR----LGI-AYVPEGRRIFPRLTVEENLLLGA-YARRDKEAQERDLEEVYELFPR 125
Query: 194 LG--LTHVAGSFVG---------------------DEENRGISGLDSTSALQVIELLASM 230
L AG+ G DE + G++ ++ E + +
Sbjct: 126 LKERRNQRAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPK---IVEEIFEAIKEL 182
Query: 231 AKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGSLELLEE 275
K T++L + Q + L+ + +L G +V G+ L
Sbjct: 183 RKEGGMTILL-VEQNARFALEIADRGYVLENGRIVLSGTAAELLA 226
|
Length = 237 |
| >gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter | Back alignment and domain information |
|---|
Score = 71.5 bits (176), Expect = 3e-14
Identities = 50/210 (23%), Positives = 96/210 (45%), Gaps = 41/210 (19%)
Query: 86 ILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKKPAQLR 145
L +SF EI ++GP+G GK++ +R+I G + D + + + A
Sbjct: 15 ALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILP---DSGEVLFDGKPL-DIAARN 70
Query: 146 KICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAGSFVG 205
+I G++ +E L P + V + L++ A +LKG+ +E R++ ++ L L+ A V
Sbjct: 71 RI-GYLPEERGLYPKMKVIDQLVYLA--QLKGLKKEEARRRIDEWLERLELSEYANKRV- 126
Query: 206 DEENRG-----------------------ISGLDSTSALQVIELLASMAKAKQRTVVLSI 242
+E ++G SGLD + + +++ + +TV+LS
Sbjct: 127 EELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIREL-ARAGKTVILST 185
Query: 243 HQPSYRILQYISKF----LILSRGSVVHYG 268
HQ ++ + + L+L++G V YG
Sbjct: 186 HQ-----MELVEELCDRVLLLNKGRAVLYG 210
|
This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210 |
| >gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 73.2 bits (180), Expect = 3e-14
Identities = 51/214 (23%), Positives = 97/214 (45%), Gaps = 41/214 (19%)
Query: 85 HILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKKPAQL 144
+ ++SFE EI ++GP+G GK++ R+I G + + IT N + +
Sbjct: 16 KAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLL---EPTEGEITWNGGPLSQ-EIK 71
Query: 145 RKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAGSFV 204
+I G++ +E L P +TV++ L + A LKGM E + ++++ ++ L + +
Sbjct: 72 NRI-GYLPEERGLYPKMTVEDQLKYLA--ELKGMPKAEIQKKLQAWLERLEIVGKKTKKI 128
Query: 205 GDEENRG-----------------------ISGLD--STSALQ--VIELLASMAKAKQRT 237
E ++G SGLD + L+ + EL K + T
Sbjct: 129 -KELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFEL-----KEEGAT 182
Query: 238 VVLSIHQPSYRILQYISKFLILSRGSVVHYGSLE 271
++ S H+ + + + L+L +G V YG++E
Sbjct: 183 IIFSSHRME-HVEELCDRLLMLKKGQTVLYGTVE 215
|
Length = 300 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 70.0 bits (172), Expect = 4e-14
Identities = 48/191 (25%), Positives = 79/191 (41%), Gaps = 60/191 (31%)
Query: 85 HILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKK--PA 142
L +VS + EI+A+VGP+G+GKS+LLR I+G ++ I ++ I K
Sbjct: 13 TALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTS---GEILIDGKDIAKLPLE 69
Query: 143 QLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVES-----------LM 191
+LR+ G+V Q +S +++ RV L+
Sbjct: 70 ELRRRIGYVPQ------------------------LSGGQRQ-RVALARALLLNPDLLLL 104
Query: 192 DELGLTHVAGSFVGDEENRGISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQ 251
DE SGLD S +++ELL +A+ + RTV++ H P
Sbjct: 105 DEPT-----------------SGLDPASRERLLELLRELAE-EGRTVIIVTHDPEL-AEL 145
Query: 252 YISKFLILSRG 262
+ ++L G
Sbjct: 146 AADRVIVLKDG 156
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system | Back alignment and domain information |
|---|
Score = 71.4 bits (176), Expect = 4e-14
Identities = 57/234 (24%), Positives = 91/234 (38%), Gaps = 69/234 (29%)
Query: 83 PLHILKSVSFEARDSEILAVVGPSGTGKSSLLRII------------SGRVRDQDFDPRS 130
H LK +S + EI A++GPSG GKS+LLR++ G V D +
Sbjct: 12 DKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVL---LDGKD 68
Query: 131 ITVNCHQIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGM-SHKEKEDRVES 189
I +LR+ G V Q+ N P ++ + + + RL G+ +E ++RVE
Sbjct: 69 I---YDLDVDVLELRRRVGMVFQKPNPFP-GSIYDNVAYGL--RLHGIKLKEELDERVEE 122
Query: 190 LMDELGLTHVAGSFVGDEENR-----GISG---------------------------LDS 217
+ + L DE G+SG LD
Sbjct: 123 ALRKAALW--------DEVKDRLHALGLSGGQQQRLCLARALANEPEVLLLDEPTSALDP 174
Query: 218 TSALQVIELLASMAKAKQRTVVLSIH--QPSYRILQYISKFLILSRGSVVHYGS 269
S ++ EL+A + K+ T+V+ H Q + R+ L G +V +G
Sbjct: 175 ISTAKIEELIAEL--KKEYTIVIVTHNMQQAARVADRT---AFLLNGRLVEFGP 223
|
Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227 |
| >gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Score = 72.9 bits (179), Expect = 4e-14
Identities = 56/238 (23%), Positives = 115/238 (48%), Gaps = 46/238 (19%)
Query: 87 LKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQI-KKPAQLR 145
L VSFEA+ I+ +GP+G GKS+ ++II+G + D S+ V + + P +++
Sbjct: 18 LDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPP---DSGSVQVCGEDVLQNPKEVQ 74
Query: 146 KICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLT---H---- 198
+ G++ + + L + V+E L F A + GM + + RVE +++ +GL H
Sbjct: 75 RNIGYLPEHNPLYLDMYVREYLQFIAG--IYGMKGQLLKQRVEEMIELVGLRPEQHKKIG 132
Query: 199 -----------VAGSFVGDEE----NRGISGLDSTSALQVIELLASMAKAKQRTVVLSIH 243
+A + + D + + +GLD +++ ++ ++ K K T++LS H
Sbjct: 133 QLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGKDK--TIILSTH 190
Query: 244 QPSYRILQYI----SKFLILSRGSVVHYGSLELLEETINNLGYQIPTQLNAIEFAMEI 297
I+Q + + +I+++G +V ++ ++ L Q+ +EF +I
Sbjct: 191 -----IMQEVEAICDRVIIINKGKIV-------ADKKLDELSAANKKQVIEVEFEEQI 236
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301 |
| >gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 70.9 bits (174), Expect = 1e-13
Identities = 40/125 (32%), Positives = 64/125 (51%), Gaps = 9/125 (7%)
Query: 73 LSHL-LHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSI 131
+SHL L P L+ VS E++ V+GPSG GK++LL +I+G V SI
Sbjct: 6 VSHLSLSYEGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSR---GSI 62
Query: 132 TVNCHQIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLM 191
+N +I+ P R G V Q + LLP L V + + F +L+G+ ++ + ++
Sbjct: 63 QLNGRRIEGPGAER---GVVFQNEALLPWLNVIDNVAFG--LQLRGIEKAQRREIAHQML 117
Query: 192 DELGL 196
+GL
Sbjct: 118 ALVGL 122
|
Length = 259 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 73.4 bits (181), Expect = 1e-13
Identities = 42/147 (28%), Positives = 70/147 (47%), Gaps = 16/147 (10%)
Query: 57 VTVRNLS--YAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLL 114
++VRNLS Y + L + + + VSF+ R+ E L +VG SG+GKS+L
Sbjct: 281 LSVRNLSKRYGSR------KGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLA 334
Query: 115 RIISGRVRDQD----FDPRSITVNCHQIKKPAQLRKI-CGFVAQEDNLLPLLTVKETLMF 169
RI++G + FD + + + +++ R+I F +L P +TV + L
Sbjct: 335 RILAGLLPPSSGSIIFDGQDLDLTGGELR--RLRRRIQMVFQDPYSSLNPRMTVGDILAE 392
Query: 170 SANFRLKGMSHKEKEDRVESLMDELGL 196
G S E+ RV L++ +GL
Sbjct: 393 PLRI-HGGGSGAERRARVAELLELVGL 418
|
Length = 539 |
| >gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Score = 69.3 bits (170), Expect = 3e-13
Identities = 50/196 (25%), Positives = 91/196 (46%), Gaps = 39/196 (19%)
Query: 85 HILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQI-----K 139
+L ++ E EI+ + GPSG+GK++LL +I G Q+ S+ V ++ K
Sbjct: 19 QVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQE---GSLKVLGQELYGASEK 75
Query: 140 KPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTH- 198
+ QLR+ G++ Q NLL LT ++ + + +S++E +R ++++ +GL
Sbjct: 76 ELVQLRRNIGYIFQAHNLLGFLTARQNVQMALEL-QPNLSYQEARERARAMLEAVGLGDH 134
Query: 199 -----------------VAGSFVG-------DEENRGISGLDSTSALQVIELLASMAKAK 234
+A + V DE + LDS S V+EL+ +A+ +
Sbjct: 135 LDYYPHNLSGGQKQRVAIARALVHRPKLVLADEPT---AALDSKSGRDVVELMQKLAREQ 191
Query: 235 QRTVVLSIHQPSYRIL 250
T+++ H RIL
Sbjct: 192 GCTILIVTHDN--RIL 205
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220 |
| >gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 70.4 bits (173), Expect = 3e-13
Identities = 33/118 (27%), Positives = 55/118 (46%), Gaps = 17/118 (14%)
Query: 86 ILKSVSFEARDSEILAVVGPSGTGKSSLLRII-------SGRVRDQDFDPRSITVNCHQI 138
+ V+ + E L ++GPSG+GK++ L++I SG + D +
Sbjct: 16 AVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDL------- 68
Query: 139 KKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGL 196
P +LR+ G+V Q+ L P LTV E + L G + + R + L+D +GL
Sbjct: 69 -DPVELRRKIGYVIQQIGLFPHLTVAENIATVPK--LLGWDKERIKKRADELLDLVGL 123
|
Length = 309 |
| >gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 70.8 bits (174), Expect = 3e-13
Identities = 39/121 (32%), Positives = 60/121 (49%), Gaps = 14/121 (11%)
Query: 87 LKSVSFEARDSEILAVVGPSGTGKSSLLRII-------SGRVRDQDFDPRSITVNCHQIK 139
L +S + + E++A++GPSG GKS+LLRII +GR+R ++
Sbjct: 18 LDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVS------N 71
Query: 140 KPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHV 199
+ RK+ GFV Q L P +TV + + F R + S E RVE L+ + L +
Sbjct: 72 LAVRDRKV-GFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGL 130
Query: 200 A 200
A
Sbjct: 131 A 131
|
Length = 345 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 71.1 bits (175), Expect = 6e-13
Identities = 48/233 (20%), Positives = 88/233 (37%), Gaps = 57/233 (24%)
Query: 83 PLHILKSVSFEARDSEILAVVGPSGTGKSSLLRII-----------SGRVRDQDFDPRSI 131
+ ++ VSFE EIL +VG SG+GKS+L + SG V D R +
Sbjct: 21 RVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVI---LDGRDL 77
Query: 132 TVNCHQIKKPAQLRKICG----FVAQE--DNLLPLLTVKETLMFSANFRLKGMSHKEKED 185
++RK+ G + Q+ +L P++T+ + A S E
Sbjct: 78 LGLS-----EREMRKLRGKRIAMIFQDPMTSLNPVMTI-GDQIREALRLHGKGSRAEARK 131
Query: 186 RVESLMDELGLTH--VAGSF-------------------------VGDEENRGISGLDST 218
R L++++GL + + DE + LD T
Sbjct: 132 RAVELLEQVGLPDPERRDRYPHQLSGGMRQRVMIAMALALKPKLLIADEPT---TALDVT 188
Query: 219 SALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGSLE 271
+ Q+++LL + + V+ H + + + +++ +G +V G E
Sbjct: 189 TQAQILDLLKDLQRELGMAVLFITHDLGV-VAELADRVVVMYKGEIVETGPTE 240
|
Length = 539 |
| >gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system | Back alignment and domain information |
|---|
Score = 68.2 bits (168), Expect = 7e-13
Identities = 41/134 (30%), Positives = 55/134 (41%), Gaps = 26/134 (19%)
Query: 84 LHILKSVSFEARDSEILAVVGPSGTGKSSLLRIIS-------GRVRDQDFDPRSITVNCH 136
L L VSF R EI ++GP+G GK++L +IS G V FD IT
Sbjct: 13 LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVL---FDGEDIT---- 65
Query: 137 QIKKPAQLRKICGFVA--QEDNLLPLLTVKETLMFSANFRLKGM--------SHKEKEDR 186
P G Q L P LTV E +M +A R +E +R
Sbjct: 66 --GLPPHEIARLGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARER 123
Query: 187 VESLMDELGLTHVA 200
E L++ +GL +A
Sbjct: 124 AEELLERVGLADLA 137
|
The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236 |
| >gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 69.1 bits (170), Expect = 1e-12
Identities = 49/210 (23%), Positives = 84/210 (40%), Gaps = 57/210 (27%)
Query: 80 PKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLL------------RIISGRVRDQDFD 127
+ + VSFE + EIL +VG SG+GKS L RI+ G + FD
Sbjct: 14 DAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEIL---FD 70
Query: 128 PRSITVNCHQIKKPAQLRKICG----FVAQE--DNLLPLLTVKETLMFSANFRLKGMSHK 181
+ + +LRKI G + Q+ +L P++T+ + + KG+S K
Sbjct: 71 GKDLL-----SLSEKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKK 125
Query: 182 EKEDRVESLMDELGLTH---VAGSF-------------------------VGDEENRGIS 213
E ++R L++ +G+ S+ + DE +
Sbjct: 126 EAKERAIELLELVGIPDPERRLKSYPHELSGGMRQRVMIAMALALNPKLLIADEPT---T 182
Query: 214 GLDSTSALQVIELLASMAKAKQRTVVLSIH 243
LD T Q+++LL + + K ++L H
Sbjct: 183 ALDVTVQAQILDLLKELQREKGTALILITH 212
|
Length = 316 |
| >gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter | Back alignment and domain information |
|---|
Score = 67.0 bits (164), Expect = 1e-12
Identities = 49/186 (26%), Positives = 79/186 (42%), Gaps = 37/186 (19%)
Query: 87 LKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRS--ITVNCHQI-----K 139
L ++ E + +VGPSG GKS+LL++I P S I VN + +
Sbjct: 17 LDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEEL-----PTSGTIRVNGQDVSDLRGR 71
Query: 140 KPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHV 199
LR+ G V Q+ LLP V E + F+ + G+ +E RV + ++ +GL+H
Sbjct: 72 AIPYLRRKIGVVFQDFRLLPDRNVYENVAFA--LEVTGVPPREIRKRVPAALELVGLSHK 129
Query: 200 AGSFV----GDEENR------------------GISGLDSTSALQVIELLASMAKAKQRT 237
+ G E+ R LD + +++ LL + KA T
Sbjct: 130 HRALPAELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGT-T 188
Query: 238 VVLSIH 243
VV++ H
Sbjct: 189 VVVATH 194
|
FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214 |
| >gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 67.3 bits (165), Expect = 2e-12
Identities = 42/127 (33%), Positives = 61/127 (48%), Gaps = 14/127 (11%)
Query: 86 ILKSVSFEARDSEILAVVGPSGTGKSSLLRII-------SGR--VRDQDFDPRSITVNCH 136
L ++ + E L ++GPSG GKSSLLR++ SG + FD
Sbjct: 17 ALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTP---- 72
Query: 137 QIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGL 196
K +LR+ G V Q+ NL P LTV++ L+ A R+ G+S + R E L++ L L
Sbjct: 73 SDKAIRELRRNVGMVFQQYNLWPHLTVQQNLI-EAPCRVLGLSKDQALARAEKLLERLRL 131
Query: 197 THVAGSF 203
A F
Sbjct: 132 KPYADRF 138
|
Length = 242 |
| >gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 66.5 bits (163), Expect = 2e-12
Identities = 43/125 (34%), Positives = 60/125 (48%), Gaps = 14/125 (11%)
Query: 86 ILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRS--ITVNCHQIKKPAQ 143
L+ VSF E + + GPSG GKS+LL++I G R P I VN H + +
Sbjct: 17 ALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEER-----PTRGKILVNGHDLSRLKG 71
Query: 144 -----LRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTH 198
LR+ G V Q+ LLP TV E + R+ G +E RV ++D +GL H
Sbjct: 72 REIPFLRRQIGVVFQDFRLLPDRTVYENVALP--LRVIGKPPREIRRRVSEVLDLVGLKH 129
Query: 199 VAGSF 203
A +
Sbjct: 130 KARAL 134
|
Length = 223 |
| >gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Score = 69.9 bits (171), Expect = 3e-12
Identities = 62/221 (28%), Positives = 101/221 (45%), Gaps = 49/221 (22%)
Query: 84 LHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGR---------VRDQDFDPRSITVN 134
L +L+ V+ R + A++G SG GK++L+ +++GR +R F
Sbjct: 893 LQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFP------- 945
Query: 135 CHQIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRL-KGMSHKEKEDRVESLMDE 193
KK +I G+ Q D P +TV+E+L++SA RL K +S +EK V+ +M+
Sbjct: 946 ----KKQETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMEL 1001
Query: 194 LGLTHVAGSFVG-------DEENRG--------------------ISGLDSTSALQVIEL 226
+ L ++ + VG E R SGLD+ +A V+
Sbjct: 1002 VELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1061
Query: 227 LASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHY 267
+ + RTVV +IHQPS I + + L++ RG V Y
Sbjct: 1062 VRNTVDTG-RTVVCTIHQPSIDIFEAFDELLLMKRGGQVIY 1101
|
Length = 1470 |
| >gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 66.1 bits (162), Expect = 5e-12
Identities = 47/197 (23%), Positives = 76/197 (38%), Gaps = 48/197 (24%)
Query: 84 LHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQD----FDPRSIT-VNCHQI 138
L + VS E R EI+ ++GP+G GK++L +I+G + F R IT + H+I
Sbjct: 17 LTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRI 76
Query: 139 KKPAQLRKICGFVAQEDNLLPLLTVKETLM--------FSANFRLKGMSHKEKE--DRVE 188
+ R F Q L P LTV E + S +E+E +R
Sbjct: 77 ARLGIART---F--QITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERAR 131
Query: 189 SLMDELGLTHVAGSFVG-------------------------DEENRGISGLDSTSALQV 223
L++ +GL +A G DE +GL+ ++
Sbjct: 132 ELLEFVGLGELADRPAGNLSYGQQRRLEIARALATQPKLLLLDEP---AAGLNPEETEEL 188
Query: 224 IELLASMAKAKQRTVVL 240
EL+ + T++L
Sbjct: 189 AELIRELRDRGGVTILL 205
|
Length = 250 |
| >gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system | Back alignment and domain information |
|---|
Score = 65.6 bits (161), Expect = 6e-12
Identities = 38/124 (30%), Positives = 70/124 (56%), Gaps = 12/124 (9%)
Query: 85 HILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVR-DQ---DFDPRSITVNCHQ-IK 139
++ VS + EI+ ++GP+G GK++ +I G V+ D D + IT +
Sbjct: 14 KVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDIT---KLPMH 70
Query: 140 KPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHV 199
K A+L G++ QE ++ LTV+E ++ A ++G+S KE+E+++E L++E +TH+
Sbjct: 71 KRARLG--IGYLPQEASIFRKLTVEENIL--AVLEIRGLSKKEREEKLEELLEEFHITHL 126
Query: 200 AGSF 203
S
Sbjct: 127 RKSK 130
|
The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232 |
| >gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein | Back alignment and domain information |
|---|
Score = 64.3 bits (157), Expect = 1e-11
Identities = 47/182 (25%), Positives = 85/182 (46%), Gaps = 32/182 (17%)
Query: 87 LKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRS--ITVNCHQI-KKPAQ 143
++ VSF R EI ++GP+G GK++ +++++ ++ P S TV H + ++P +
Sbjct: 16 VRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLK-----PTSGRATVAGHDVVREPRE 70
Query: 144 LRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAGSF 203
+R+ G V Q+ ++ LT E L A RL G+ E+ +R++ L+D +GL A
Sbjct: 71 VRRRIGIVFQDLSVDDELTGWENLYIHA--RLYGVPGAERRERIDELLDFVGLLEAADRL 128
Query: 204 VGD---------EENRGI-------------SGLDSTSALQVIELLASMAKAKQRTVVLS 241
V E R + GLD + V E + + + T++L+
Sbjct: 129 VKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLT 188
Query: 242 IH 243
H
Sbjct: 189 TH 190
|
DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C | Back alignment and domain information |
|---|
Score = 63.0 bits (154), Expect = 1e-11
Identities = 26/76 (34%), Positives = 43/76 (56%), Gaps = 5/76 (6%)
Query: 86 ILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKK--PAQ 143
+L++VSF E LA++GPSG+GKS+L R+I G +R + ++ I + P +
Sbjct: 17 VLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTS---GRVRLDGADISQWDPNE 73
Query: 144 LRKICGFVAQEDNLLP 159
L G++ Q+D L
Sbjct: 74 LGDHVGYLPQDDELFS 89
|
This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173 |
| >gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system | Back alignment and domain information |
|---|
Score = 64.1 bits (157), Expect = 1e-11
Identities = 49/209 (23%), Positives = 88/209 (42%), Gaps = 45/209 (21%)
Query: 85 HILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKKPAQL 144
LK VSFE E + ++G +G GKS+LLR+++G P S TV
Sbjct: 36 WALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYP-----PDSGTVTVR-------- 82
Query: 145 RKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMD--ELG------- 195
++ + P LT +E + + RL G+S KE +++++ +++ ELG
Sbjct: 83 GRVSSLLGLGGGFNPELTGRENIYLNG--RLLGLSRKEIDEKIDEIIEFSELGDFIDLPV 140
Query: 196 -------LTHVAGS---------FVGDEENRGISGLDSTSALQVIELLASMAKAKQRTVV 239
+A + + DE ++ D+ + L + + +TV+
Sbjct: 141 KTYSSGMKARLAFAIATALEPDILLIDE---VLAVGDAAFQEKCQRRLREL-LKQGKTVI 196
Query: 240 LSIHQPSYRILQYISKFLILSRGSVVHYG 268
L H PS I + + L+L +G + G
Sbjct: 197 LVSHDPSS-IKRLCDRALVLEKGKIRFDG 224
|
The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224 |
| >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 64.4 bits (157), Expect = 2e-11
Identities = 42/118 (35%), Positives = 62/118 (52%), Gaps = 7/118 (5%)
Query: 87 LKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKK-PAQLR 145
L V+ E ++A++GPSG+GKS+LLRII+G + D I +N + A+ R
Sbjct: 16 LDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGL---EQPDSGRIRLNGQDATRVHARDR 72
Query: 146 KICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAGSF 203
KI GFV Q L LTV++ + F R K K K RVE L++ + L + +
Sbjct: 73 KI-GFVFQHYALFKHLTVRDNIAFGLEIR-KHPKAKIKA-RVEELLELVQLEGLGDRY 127
|
[Transport and binding proteins, Anions]. Length = 237 |
| >gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 64.3 bits (157), Expect = 2e-11
Identities = 37/125 (29%), Positives = 60/125 (48%), Gaps = 14/125 (11%)
Query: 86 ILKSVSFEARDSEILAVVGPSGTGKSSLLRII-------SGRVRDQDFDPRSITVNCHQI 138
+L ++ E++ ++GPSG+GKS+LLR I SG + V+ I
Sbjct: 16 VLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLI 75
Query: 139 KKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTH 198
++ A G V Q+ L P LT E +MF R++G S +E E + L+ ++GL
Sbjct: 76 RQEA------GMVFQQFYLFPHLTALENVMFGP-LRVRGASKEEAEKQARELLAKVGLAE 128
Query: 199 VAGSF 203
A +
Sbjct: 129 RAHHY 133
|
Length = 240 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 63.7 bits (156), Expect = 2e-11
Identities = 52/211 (24%), Positives = 100/211 (47%), Gaps = 40/211 (18%)
Query: 85 HILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRS--ITVNCHQIKKPA 142
+L+ VSFE + E LA+VGP+G GKS+LL+ I G ++ P S I V K
Sbjct: 13 PVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLK-----PTSGSIRVFG---KPLE 64
Query: 143 QLRKICGFVAQEDNLLPL--LTVKETLM---FSANFRLKGMSHKEKEDRVESLMDELGLT 197
+ RK G+V Q ++ ++V++ ++ + + +S +K +V+ ++ +GL+
Sbjct: 65 KERKRIGYVPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKA-KVDEALERVGLS 123
Query: 198 HVA----GSFVGDEENRGI------------------SGLDSTSALQVIELLASMAKAKQ 235
+A G G ++ R + +G+D + + ELL + + +
Sbjct: 124 ELADRQIGELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLREL-RREG 182
Query: 236 RTVVLSIHQPSYRILQYISKFLILSRGSVVH 266
T+++ H +L+Y + L+L+R V
Sbjct: 183 MTILVVTHDLG-LVLEYFDRVLLLNRTVVAS 212
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 63.3 bits (154), Expect = 3e-11
Identities = 48/193 (24%), Positives = 87/193 (45%), Gaps = 32/193 (16%)
Query: 96 DSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRS--ITVNCHQIKKPAQLRKICGFVAQ 153
D EI+A++GPSG GKS+LL +I+G + +P S I VN A ++ + Q
Sbjct: 23 DGEIVAIMGPSGAGKSTLLNLIAGFI-----EPASGSIKVNDQSHTGLAPYQRPVSMLFQ 77
Query: 154 EDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELG----LTHVAGSFVGDEEN 209
E+NL LTV++ + + LK + E++++V ++G L + G +
Sbjct: 78 ENNLFAHLTVRQNIGLGLHPGLK--LNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQ 135
Query: 210 R------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQ 251
R S LD +++ L+ + +QRT+++ H S
Sbjct: 136 RVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLS-DARA 194
Query: 252 YISKFLILSRGSV 264
S+ ++S+G +
Sbjct: 195 IASQIAVVSQGKI 207
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 63.8 bits (156), Expect = 3e-11
Identities = 50/247 (20%), Positives = 103/247 (41%), Gaps = 60/247 (24%)
Query: 57 VTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRI 116
+ V NL+ + N +L +S EI A++GP+G GKS+LL+
Sbjct: 5 IEVENLTVSYG-NRPVLED--------------ISLSVEKGEITALIGPNGAGKSTLLKA 49
Query: 117 ISGRVRDQDFDPRS--ITVNCHQIKKPAQLRKICGFVAQ---EDNLLPLLTVKETLMFSA 171
I G ++ P S I + ++K + +I G+V Q D P +TVK+ ++
Sbjct: 50 ILGLLK-----PSSGEIKIFGKPVRKRRKRLRI-GYVPQKSSVDRSFP-ITVKDVVLLGR 102
Query: 172 NFRLK--GMSHKEKEDRVESLMDELGLTHVAGSFVG------------------------ 205
+ +K+ +++V+ ++ +G+ + +G
Sbjct: 103 YGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLL 162
Query: 206 -DEENRGISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSV 264
DE +G+D ++ +LL + + + +TV++ H ++ Y + + L+R +
Sbjct: 163 LDEPF---TGVDVAGQKEIYDLLKEL-RQEGKTVLMVTHDLG-LVMAYFDRVICLNRH-L 216
Query: 265 VHYGSLE 271
+ G E
Sbjct: 217 IASGPPE 223
|
Length = 254 |
| >gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Score = 63.0 bits (154), Expect = 3e-11
Identities = 49/217 (22%), Positives = 90/217 (41%), Gaps = 34/217 (15%)
Query: 73 LSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSIT 132
++ + L VS R E L + GPSG GK++LL+++ G + +
Sbjct: 4 FHNVSKAYPGGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSR---GQVR 60
Query: 133 VNCHQI-----KKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRV 187
+ + ++ LR+ G V Q+ LLP TV E + ++G +E + RV
Sbjct: 61 IAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLPDRTVYENVALP--LEVRGKKEREIQRRV 118
Query: 188 ESLMDELGLTH----VAGSFVGDEENR-GIS-----------------GLDSTSALQVIE 225
+ + ++GL H G E+ R I+ LD + ++++
Sbjct: 119 GAALRQVGLEHKADAFPEQLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILD 178
Query: 226 LLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRG 262
LL + K TV+++ H S + + + +IL G
Sbjct: 179 LLKRLNKRGT-TVIVATHDLSL-VDRVAHRVIILDDG 213
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214 |
| >gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 63.6 bits (155), Expect = 3e-11
Identities = 42/110 (38%), Positives = 59/110 (53%), Gaps = 15/110 (13%)
Query: 87 LKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPR-----SITVNCHQIKKP 141
L SVS + +EI A++GPSG+GKS+LLR I+ R D +P SI N H I P
Sbjct: 21 LNSVSLDFYPNEITALIGPSGSGKSTLLRSIN---RMNDLNPEVTITGSIVYNGHNIYSP 77
Query: 142 ----AQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRV 187
LRK G V Q+ N P +++ E +++ RLKG+ K+ D
Sbjct: 78 RTDTVDLRKEIGMVFQQPNPFP-MSIYENVVYG--LRLKGIKDKQVLDEA 124
|
Length = 252 |
| >gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 63.6 bits (155), Expect = 3e-11
Identities = 38/137 (27%), Positives = 67/137 (48%), Gaps = 19/137 (13%)
Query: 77 LHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRII-------SGRVR------- 122
LH+ +LK VS +A ++++++G SG+GKS+ LR I +G +R
Sbjct: 12 LHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIR 71
Query: 123 -DQDFDPRSITVNCHQIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHK 181
+D D + + Q+++ LR G V Q NL +TV E ++ A + G+S
Sbjct: 72 LKRDKDGQLKPADKRQLQR---LRTRLGMVFQHFNLWSHMTVLENVI-EAPVHVLGVSKA 127
Query: 182 EKEDRVESLMDELGLTH 198
E +R E + ++G+
Sbjct: 128 EAIERAEKYLAKVGIAE 144
|
Length = 256 |
| >gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 64.6 bits (158), Expect = 4e-11
Identities = 38/129 (29%), Positives = 58/129 (44%), Gaps = 24/129 (18%)
Query: 86 ILKSVSFEARDSEILAVVGPSGTGKSSLLRII-------SGRVRDQDFDPRSITVNCHQI 138
+ +S + + E + ++GPSG GK++LLR+I SG + D IT
Sbjct: 20 AVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEIL---LDGEDIT------ 70
Query: 139 KKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKED---RVESLMDELG 195
P + R I G V Q L P +TV+E + F LK +K + RVE ++ +G
Sbjct: 71 DVPPEKRPI-GMVFQSYALFPHMTVEENVAFG----LKVRKKLKKAEIKARVEEALELVG 125
Query: 196 LTHVAGSFV 204
L A
Sbjct: 126 LEGFADRKP 134
|
Length = 352 |
| >gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 63.4 bits (155), Expect = 5e-11
Identities = 55/218 (25%), Positives = 88/218 (40%), Gaps = 31/218 (14%)
Query: 86 ILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKKPAQ-- 143
IL V + EILA++G SG+GKS+LLR+I G +R + + Q+ +
Sbjct: 23 ILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYE 82
Query: 144 LRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAGSF 203
+RK G + Q+ L LTV E + F + + V ++ +GL A
Sbjct: 83 IRKRMGVLFQQGALFSSLTVFENVAFPL-REHTKLPESLIRELVLMKLELVGLRGAAADL 141
Query: 204 VGDEENRGI-----------------------SGLDSTSALQVIELLASMAKAKQRTVVL 240
E + G+ SGLD SA + EL+ + A TV++
Sbjct: 142 YPSELSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIM 201
Query: 241 SIHQPS--YRILQYISKFLILSRGSVVHYGSLELLEET 276
H I + +L+ G V+ G+ E L +
Sbjct: 202 VTHDLDSLLTIADRV---AVLADGKVIAEGTPEELLAS 236
|
Length = 263 |
| >gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 63.1 bits (154), Expect = 5e-11
Identities = 55/249 (22%), Positives = 93/249 (37%), Gaps = 49/249 (19%)
Query: 57 VTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRI 116
++VRNLS K H L +VS E E L +VG SG+GKS+L R+
Sbjct: 4 LSVRNLSIVYG-----------GGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARL 52
Query: 117 ISGRVRDQDFDPRSITVN---CHQIKKPAQLRKICGFVAQ--EDNLLPLLTVKETLMFSA 171
++G + SI ++ K+ + V Q +L P TV L
Sbjct: 53 LAGL---EKPSSGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEP- 108
Query: 172 NFRLKGMSHKEKEDRVESLMDELGL-----THVAGSFVGDEENR---------------- 210
L+ + + R+ L+D++GL G + R
Sbjct: 109 ---LRPHGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEPKLLIL 165
Query: 211 --GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYIS-KFLILSRGSVVHY 267
S LD + Q++ LL + K + T + H +++++ + ++ G +V
Sbjct: 166 DEPTSALDVSVQAQILNLLLELKKERGLTYLFISHD--LALVEHMCDRIAVMDNGQIVEI 223
Query: 268 GSLELLEET 276
G E L
Sbjct: 224 GPTEELLSH 232
|
Length = 252 |
| >gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter | Back alignment and domain information |
|---|
Score = 62.7 bits (153), Expect = 6e-11
Identities = 30/117 (25%), Positives = 58/117 (49%), Gaps = 17/117 (14%)
Query: 87 LKSVSFEARDSEILAVVGPSGTGKSSLLRII-------SGRVRDQDFDPRSITVNCHQIK 139
+ +++ E E L ++GPSG+GK++ +++I SG + D R
Sbjct: 17 VNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQ-------- 68
Query: 140 KPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGL 196
P +LR+ G+V Q+ L P +TV+E + + +L ++ +R + L+ +GL
Sbjct: 69 DPVELRRKIGYVIQQIGLFPHMTVEENI--ALVPKLLKWPKEKIRERADELLALVGL 123
|
OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242 |
| >gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Score = 62.4 bits (152), Expect = 6e-11
Identities = 50/197 (25%), Positives = 85/197 (43%), Gaps = 37/197 (18%)
Query: 79 EPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRII-------SGRVRDQDFDPRSI 131
E K+ +LK VS EI+A+VG SG+GKS+LL ++ SG V F+ +S+
Sbjct: 13 EGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEV---LFNGQSL 69
Query: 132 TVNCHQIKKPAQLR-KICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESL 190
+ + A+LR K GF+ Q +LLP T E + + S KE ++R +
Sbjct: 70 --SKLSSNERAKLRNKKLGFIYQFHHLLPDFTALENVAMPL--LIGKKSVKEAKERAYEM 125
Query: 191 MDELGL----THVAGSFVGDEENRG------------------ISGLDSTSALQVIELLA 228
++++GL H G E R LD+ +A + +L+
Sbjct: 126 LEKVGLEHRINHRPSELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLML 185
Query: 229 SMAKAKQRTVVLSIHQP 245
+ + + ++ H
Sbjct: 186 ELNRELNTSFLVVTHDL 202
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 61.2 bits (150), Expect = 6e-11
Identities = 30/115 (26%), Positives = 53/115 (46%), Gaps = 31/115 (26%)
Query: 57 VTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRI 116
+ +N+S++ P +LK VS + E +A+VGPSG+GKS+LL++
Sbjct: 1 IEFKNVSFSYPGR-------------PKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKL 47
Query: 117 ISGRVRDQDFDPRS--ITVNCHQIKK--PAQLRKICGFVAQE---------DNLL 158
+ +DP S I ++ ++ LRK +V Q+ +N+L
Sbjct: 48 LLR-----LYDPTSGEILIDGVDLRDLDLESLRKNIAYVPQDPFLFSGTIRENIL 97
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Score = 62.8 bits (153), Expect = 6e-11
Identities = 40/122 (32%), Positives = 63/122 (51%), Gaps = 14/122 (11%)
Query: 86 ILKSVSFEARDSEILAVVGPSGTGKSSLLRII-------SGRVRDQDFD---PRSITVNC 135
+L + E + E++A++GPSG+GK++LLR I +G +R D RS++
Sbjct: 18 VLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQK 77
Query: 136 HQIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELG 195
I+ QLR+ GFV Q NL P TV E ++ +KG +E R L+ ++G
Sbjct: 78 GLIR---QLRQHVGFVFQNFNLFPHRTVLENII-EGPVIVKGEPKEEATARARELLAKVG 133
Query: 196 LT 197
L
Sbjct: 134 LA 135
|
Length = 250 |
| >gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 62.6 bits (153), Expect = 6e-11
Identities = 51/212 (24%), Positives = 88/212 (41%), Gaps = 45/212 (21%)
Query: 85 HILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKKPAQL 144
LK +SFE E + ++G +G GKS+LL++I+G + P S V
Sbjct: 41 WALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYK-----PTSGKVKVTG------- 88
Query: 145 RKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMD--ELG------- 195
K+ + P LT +E + + G++ KE +++V+ +++ ELG
Sbjct: 89 -KVAPLIELGAGFDPELTGRENIYLRG--LILGLTRKEIDEKVDEIIEFAELGDFIDQPV 145
Query: 196 ---------------LTHVAGS-FVGDEENRGISGLDSTSALQVIELLASMAKAKQRTVV 239
THV + DE ++ D+ + +E L + + K +T+V
Sbjct: 146 KTYSSGMYARLAFSVATHVEPDILLLDE---VLAVGDAAFQEKCLERLNELVE-KNKTIV 201
Query: 240 LSIHQPSYRILQYISKFLILSRGSVVHYGSLE 271
L H I QY + + L G + GS E
Sbjct: 202 LVSHDLGA-IKQYCDRAIWLEHGQIRMEGSPE 232
|
Length = 249 |
| >gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter | Back alignment and domain information |
|---|
Score = 61.8 bits (151), Expect = 7e-11
Identities = 47/203 (23%), Positives = 92/203 (45%), Gaps = 33/203 (16%)
Query: 85 HILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKKPAQL 144
+L +S + EI +GP+G GK++ ++II G ++ D IT + +K +
Sbjct: 14 RVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIK---PDSGEITFDGKSYQKNIEA 70
Query: 145 RKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTH------ 198
+ G + + P LT +E L A RL G+ K R++ ++D +GL
Sbjct: 71 LRRIGALIEAPGFYPNLTARENLRLLA--RLLGIRKK----RIDEVLDVVGLKDSAKKKV 124
Query: 199 ------------VAGSFVGDEE----NRGISGLDSTSALQVIELLASMAKAKQRTVVLSI 242
+A + +G+ + + +GLD ++ EL+ S+ + TV++S
Sbjct: 125 KGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRD-QGITVLISS 183
Query: 243 HQPSYRILQYISKFLILSRGSVV 265
H S I + + I+++G ++
Sbjct: 184 HLLS-EIQKVADRIGIINKGKLI 205
|
The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208 |
| >gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 62.7 bits (152), Expect = 9e-11
Identities = 54/219 (24%), Positives = 100/219 (45%), Gaps = 38/219 (17%)
Query: 87 LKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKKPAQL-- 144
L +V E++A++GPSG+GKS+LLR +SG + I + +++ +L
Sbjct: 20 LHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLAR 79
Query: 145 -----RKICGFVAQEDNLLPLLTVKETLMFSA-------NFRLKGMSHKEKEDRVESLMD 192
R G++ Q+ NL+ L+V E ++ A + ++K+ +++L
Sbjct: 80 DIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALT- 138
Query: 193 ELGLTHVA----GSFVGDEENR------------------GISGLDSTSALQVIELLASM 230
+G+ H A + G ++ R I+ LD SA V++ L +
Sbjct: 139 RVGMVHFAHQRVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDI 198
Query: 231 AKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGS 269
+ TVV+++HQ Y L+Y + + L +G V + GS
Sbjct: 199 NQNDGITVVVTLHQVDY-ALRYCERIVALRQGHVFYDGS 236
|
Length = 262 |
| >gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 62.7 bits (153), Expect = 2e-10
Identities = 40/121 (33%), Positives = 60/121 (49%), Gaps = 7/121 (5%)
Query: 86 ILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKK-PAQL 144
LK +S + E + ++GPSG GK++LLRII+G + Q +I I + P Q
Sbjct: 19 ALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAG-LERQ--TAGTIYQGGRDITRLPPQK 75
Query: 145 RKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAGSFV 204
R G V Q L P LTV + + + + +GM E +RV L+D +GL +
Sbjct: 76 RDY-GIVFQSYALFPNLTVADNIAYG--LKNRGMGRAEVAERVAELLDLVGLPGSERKYP 132
Query: 205 G 205
G
Sbjct: 133 G 133
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353 |
| >gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Score = 60.9 bits (148), Expect = 2e-10
Identities = 51/187 (27%), Positives = 86/187 (45%), Gaps = 27/187 (14%)
Query: 84 LHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKKP-- 141
L IL V + E +A++G SG+GKS+LL I++G + + HQ+ +
Sbjct: 23 LSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEAR 82
Query: 142 AQLR-KICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELG----L 196
A+LR K GFV Q L+P L E + A L+G S ++ + ++L+++LG L
Sbjct: 83 AKLRAKHVGFVFQSFMLIPTLNALENVELPA--LLRGESSRQSRNGAKALLEQLGLGKRL 140
Query: 197 THVAGSFVGDEEN-----RGISG-------------LDSTSALQVIELLASMAKAKQRTV 238
H+ G E+ R +G LD + ++ +LL S+ + T+
Sbjct: 141 DHLPAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTL 200
Query: 239 VLSIHQP 245
+L H
Sbjct: 201 ILVTHDL 207
|
Length = 228 |
| >gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Score = 60.9 bits (148), Expect = 2e-10
Identities = 37/114 (32%), Positives = 59/114 (51%), Gaps = 6/114 (5%)
Query: 87 LKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKKPAQLRK 146
LK V+ + E ++++G SG GKS+LL +ISG + + + QI +P R
Sbjct: 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTS---GGVILEGKQITEPGPDRM 57
Query: 147 ICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVA 200
+ V Q +LLP LTV+E + + + L +S E+ VE + +GLT A
Sbjct: 58 V---VFQNYSLLPWLTVRENIALAVDRVLPDLSKSERRAIVEEHIALVGLTEAA 108
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230 |
| >gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter | Back alignment and domain information |
|---|
Score = 60.8 bits (148), Expect = 2e-10
Identities = 51/214 (23%), Positives = 85/214 (39%), Gaps = 42/214 (19%)
Query: 87 LKSVSFEARDSEILAVVGPSGTGKSSLLRII-------SGRVRDQDFDPRSITVNCHQIK 139
LK+VS E + ++GP+G+GKS LL I SG++ + + IT
Sbjct: 15 LKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKIL---LNGKDIT------N 65
Query: 140 KPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHV 199
P + R I +V Q L P +TV + + + + + + KE E +V + + LG+ H+
Sbjct: 66 LPPEKRDI-SYVPQNYALFPHMTVYKNIAYG--LKKRKVDKKEIERKVLEIAEMLGIDHL 122
Query: 200 ----AGSFVGDEENRG------------------ISGLDSTSALQVIELLASMAKAKQRT 237
+ G E+ R S LD + ++ E L + K T
Sbjct: 123 LNRKPETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVT 182
Query: 238 VVLSIHQPSYRILQYISKFLILSRGSVVHYGSLE 271
V+ H K I+ G ++ G E
Sbjct: 183 VLHVTHDFE-EAWALADKVAIMLNGKLIQVGKPE 215
|
Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 61.0 bits (148), Expect = 2e-10
Identities = 42/126 (33%), Positives = 61/126 (48%), Gaps = 14/126 (11%)
Query: 87 LKSVSFEARDSEILAVVGPSGTGKSSLLRII-------SGR--VRDQDFDPRSITVNCHQ 137
L ++ + + E L ++GPSG GKSSLLR++ SG + FD +
Sbjct: 18 LFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSD--- 74
Query: 138 IKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLT 197
K LR+ G V Q+ NL P LTV+E L+ A R+ G+S + R E L+ L L
Sbjct: 75 -KAIRDLRRNVGMVFQQYNLWPHLTVQENLI-EAPCRVLGLSKDQALARAEKLLKRLRLK 132
Query: 198 HVAGSF 203
A +
Sbjct: 133 PYADRY 138
|
Length = 242 |
| >gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 60.8 bits (148), Expect = 3e-10
Identities = 55/269 (20%), Positives = 107/269 (39%), Gaps = 60/269 (22%)
Query: 57 VTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRI 116
+T+ N+S + +L + S+ I +++GP+G GKS+LL +
Sbjct: 2 ITIENVSKSYG-TKVVLDDV------------SLDIPKG--GITSIIGPNGAGKSTLLSM 46
Query: 117 ISGRVRDQDFDPRSITVNCHQIK--KPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFR 174
+S R D IT++ ++ +L K + QE+++ LTV++ + F
Sbjct: 47 MS---RLLKKDSGEITIDGLELTSTPSKELAKKLSILKQENHINSRLTVRDLVGFGRFPY 103
Query: 175 LKGMSHKEKEDRVESLMDELGLTHVAGSFV----GDEENRG------------------I 212
+G KE + ++ L L ++ ++ G + R +
Sbjct: 104 SQGRLTKEDRRIINEAIEYLHLEDLSDRYLDELSGGQRQRAFIAMVLAQDTDYVLLDEPL 163
Query: 213 SGLDSTSALQVIELLASMAKAKQRTVVLSIH---QPSYRILQYISKFLILSRGSVVHYGS 269
+ LD ++Q++++L +A +T+V+ +H S Y + L G VV GS
Sbjct: 164 NNLDMKHSVQIMKILRRLADELGKTIVVVLHDINFAS----CYSDHIVALKNGKVVKQGS 219
Query: 270 ------LELLEETINNLGYQIPTQLNAIE 292
E+L E Y + + I
Sbjct: 220 PDEIIQPEILSEI-----YDMDIPVEEIN 243
|
Length = 252 |
| >gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Score = 59.8 bits (146), Expect = 4e-10
Identities = 28/89 (31%), Positives = 43/89 (48%), Gaps = 10/89 (11%)
Query: 85 HILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQD----FDPRSITVNCHQIKK 140
HIL+ VS E E+ V+G +G GK++LL+ + G + + D IT
Sbjct: 14 HILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITK-----LP 68
Query: 141 PAQL-RKICGFVAQEDNLLPLLTVKETLM 168
P + R +V Q + P LTV+E L+
Sbjct: 69 PHERARAGIAYVPQGREIFPRLTVEENLL 97
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230 |
| >gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 60.3 bits (147), Expect = 4e-10
Identities = 39/133 (29%), Positives = 69/133 (51%), Gaps = 10/133 (7%)
Query: 85 HILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQI-KKP-- 141
++ VS E EI+ ++GP+G GK++ +I G VR D I ++ I K P
Sbjct: 18 KVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRP---DSGKILLDDEDITKLPMH 74
Query: 142 AQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHV-- 199
+ R G++ QE ++ LTV++ +M R K + E+++ +++L++E +TH+
Sbjct: 75 KRARLGIGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRD 134
Query: 200 --AGSFVGDEENR 210
A S G E R
Sbjct: 135 SKAYSLSGGERRR 147
|
Length = 243 |
| >gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 60.2 bits (147), Expect = 5e-10
Identities = 57/225 (25%), Positives = 98/225 (43%), Gaps = 54/225 (24%)
Query: 85 HILKSVSFEARDSEILAVVGPSGTGKSSLLRI------------ISGRVRDQDFDPRSIT 132
H LK ++ + +++ A++GPSG GKS+LLR + G V +
Sbjct: 21 HALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPK 80
Query: 133 VNCHQIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVES--- 189
V+ +LR+ G V Q+ N P +++ + + + RL G+ KE ++ VES
Sbjct: 81 VD------VVELRRRVGMVFQKPNPFP-MSIYDNVAYGL--RLHGIKDKELDEIVESSLK 131
Query: 190 ---LMDELG--LTHVAGSFVGDEEN-----RGI-------------SGLDSTSALQVIEL 226
L DE+ L A G ++ R + S LD S L++ EL
Sbjct: 132 KAALWDEVKDRLHKSALGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEEL 191
Query: 227 LASMAKAKQRTVVLSIH--QPSYRILQYISKFLILSRGSVVHYGS 269
+ + K+ T+V+ H Q + R+ Y + F + G +V +G
Sbjct: 192 ITEL--KKKYTIVIVTHNMQQAARVSDYTAFFYL---GELVEFGP 231
|
Length = 253 |
| >gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 59.8 bits (146), Expect = 6e-10
Identities = 59/252 (23%), Positives = 99/252 (39%), Gaps = 71/252 (28%)
Query: 58 TVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRII 117
RNLS + T +L VS R E++A++GP+G GKS+LLR +
Sbjct: 4 EARNLSVRLGGRT---------------LLDDVSLTLRPGEVVAILGPNGAGKSTLLRAL 48
Query: 118 SGRVRDQDFDPRS--ITVNCHQIK--KPAQLRKICGFVAQEDNLLPLLTVKETLMFSANF 173
SG + P S + +N + PA+L + + Q +L TV+E +
Sbjct: 49 SG-----ELSPDSGEVRLNGRPLADWSPAELARRRAVLPQHSSLSFPFTVEEVV------ 97
Query: 174 RLKGMSHKEKEDRVESL----MDELGLTHVAGSFV----GDEENR--------------- 210
+ H ++L + ++ L H+AG G E+ R
Sbjct: 98 AMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQLWEPDG 157
Query: 211 --GISGLDS-TSAL------QVIELLASMAKAKQRTVVLSIHQPSYRIL----QYISKFL 257
LD TSAL V+ L +A + V++ +H L +Y + +
Sbjct: 158 PPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHD-----LNLAARYADRIV 212
Query: 258 ILSRGSVVHYGS 269
+L +G +V G+
Sbjct: 213 LLHQGRLVADGT 224
|
Length = 258 |
| >gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 58.7 bits (143), Expect = 7e-10
Identities = 32/117 (27%), Positives = 58/117 (49%), Gaps = 14/117 (11%)
Query: 86 ILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRS--ITVNCHQIKKPAQ 143
+ +SF E L + GP+G+GK++LLR+I+G + P + I ++ I P
Sbjct: 17 LFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLP-----PAAGTIKLDGGDIDDP-D 70
Query: 144 LRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVA 200
+ + C ++ + + P LTV E L F A F +E + + ++ +GL +A
Sbjct: 71 VAEACHYLGHRNAMKPALTVAENLEFWAAFL------GGEELDIAAALEAVGLAPLA 121
|
Length = 207 |
| >gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 60.4 bits (147), Expect = 9e-10
Identities = 49/208 (23%), Positives = 86/208 (41%), Gaps = 36/208 (17%)
Query: 90 VSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQD----FDPRSITVNCHQIKKPAQLR 145
+F I A+ GPSG+GK+SL+ +I+G R + + R + I P + R
Sbjct: 17 ANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKR 76
Query: 146 KICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHV----AG 201
+I G+V Q+ L P TV+ L + S + + D++ +L LG+ H+ G
Sbjct: 77 RI-GYVFQDARLFPHYTVRGNLRYGMWK-----SMRAQFDQLVAL---LGIEHLLDRYPG 127
Query: 202 SFVGDEENR-GI-----------------SGLDSTSALQVIELLASMAKAKQRTVVLSIH 243
+ G E+ R I + LD +++ L + ++ H
Sbjct: 128 TLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEINIPILYVSH 187
Query: 244 QPSYRILQYISKFLILSRGSVVHYGSLE 271
+L+ + ++L G V G LE
Sbjct: 188 SL-DEVLRLADRVVVLENGKVKASGPLE 214
|
Length = 352 |
| >gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter | Back alignment and domain information |
|---|
Score = 58.9 bits (143), Expect = 1e-09
Identities = 35/123 (28%), Positives = 56/123 (45%), Gaps = 13/123 (10%)
Query: 87 LKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQD----FDPRSITVNCHQIKKPA 142
L VS + E++A++GPSG+GK++LLR+I+G R F T P
Sbjct: 18 LDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDAT------DVPV 71
Query: 143 QLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGM--SHKEKEDRVESLMDELGLTHVA 200
Q R + GFV Q L +TV + + F + + E +V L+ + L +A
Sbjct: 72 QERNV-GFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLA 130
Query: 201 GSF 203
+
Sbjct: 131 DRY 133
|
Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239 |
| >gnl|CDD|188317 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 60.2 bits (146), Expect = 1e-09
Identities = 39/128 (30%), Positives = 61/128 (47%), Gaps = 17/128 (13%)
Query: 90 VSFEARDSEILAVVGPSGTGKSSLLRIIS-------GRVRDQDFDPRSITVNCHQIKKPA 142
S + + EI ++G SG+GKS+LLR ++ G V +D D NC A
Sbjct: 43 ASLDIEEGEICVLMGLSGSGKSTLLRAVNGLNPVSRGSVLVKDGDGSVDVANC----DAA 98
Query: 143 QLRKI----CGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTH 198
LR++ V Q+ LLP TV+E + F ++GM E+ RV+ ++ +GL
Sbjct: 99 TLRRLRTHRVSMVFQQFALLPWRTVEENVAFG--LEMQGMPKAERRKRVDEQLELVGLAQ 156
Query: 199 VAGSFVGD 206
A G+
Sbjct: 157 WADRKPGE 164
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines [Transport and binding proteins, Amino acids, peptides and amines]. Length = 382 |
| >gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Score = 58.8 bits (143), Expect = 1e-09
Identities = 37/124 (29%), Positives = 61/124 (49%), Gaps = 12/124 (9%)
Query: 87 LKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRS--ITVNCHQIK--KPA 142
L VSF R +A++GP+G GKS+L +++ + + I+V H ++ A
Sbjct: 17 LDDVSFTVRPGRFVALLGPNGAGKSTLFSLLTRL-----YVAQEGQISVAGHDLRRAPRA 71
Query: 143 QLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAGS 202
L ++ G V Q+ L L+V++ L + A L G+S E R+ L+ LGL A
Sbjct: 72 ALARL-GVVFQQPTLDLDLSVRQNLRYHAA--LHGLSRAEARARIAELLARLGLAERADD 128
Query: 203 FVGD 206
V +
Sbjct: 129 KVRE 132
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236 |
| >gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 58.4 bits (142), Expect = 2e-09
Identities = 63/233 (27%), Positives = 96/233 (41%), Gaps = 45/233 (19%)
Query: 86 ILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGR----VRDQD--FDPRSITVNCHQIK 139
ILK V+ ++ E+ A++GP+G+GKS+L I G V + + FD I
Sbjct: 19 ILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILE------ 72
Query: 140 KPAQLRKICG-FVA-QEDNLLPLLTVKETLMFSANFRLKGM-SHKEKEDRVESLMDELGL 196
R G F+A Q +P +T + L + N R E ++ + LGL
Sbjct: 73 LSPDERARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGL 132
Query: 197 T------HVAGSFVGDEENRG-------------I-----SGLDSTSALQVIELLASMAK 232
+V F G E+ R I SGLD + V E + ++ +
Sbjct: 133 DEEFLERYVNEGFSGGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINAL-R 191
Query: 233 AKQRTVVLSIHQPSYRILQYIS--KFLILSRGSVVHYGSLELLEETINNLGYQ 283
+ R V++ H R+L YI K +L G +V G EL EE + GY
Sbjct: 192 EEGRGVLIITHYQ--RLLDYIKPDKVHVLYDGRIVKSGDPELAEE-LEEKGYD 241
|
Length = 251 |
| >gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 58.1 bits (141), Expect = 2e-09
Identities = 58/228 (25%), Positives = 99/228 (43%), Gaps = 55/228 (24%)
Query: 85 HILKSVSFEARDSEILAVVGPSGTGKSSLLRI------------ISGRVRDQDFDPRSIT 132
LK+++ + +++ A++GPSG GKS+LLR I G+V FD + I
Sbjct: 15 EALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVL---FDGQDIY 71
Query: 133 VNCHQIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGM-SHKEKEDRVE--- 188
+ +LR+ G V Q+ N P +++ + + + RL G+ KE ++ VE
Sbjct: 72 ---DKKIDVVELRRRVGMVFQKPNPFP-MSIYDNIAYG--PRLHGIKDKKELDEIVEESL 125
Query: 189 ---SLMDELG--LTHVAGSFVGDEEN-----RGI-------------SGLDSTSALQVIE 225
+L DE+ L A G ++ R + S LD + ++ E
Sbjct: 126 KKAALWDEVKDRLHDSALGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEE 185
Query: 226 LLASMAKAKQRTVVLSIH--QPSYRILQYISKFLILSRGSVVHYGSLE 271
L+ + K+ T+V+ H Q + RI + F G +V YG E
Sbjct: 186 LIQEL--KKKYTIVIVTHNMQQAARISDRTAFFY---DGELVEYGPTE 228
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 59.4 bits (145), Expect = 3e-09
Identities = 36/133 (27%), Positives = 54/133 (40%), Gaps = 20/133 (15%)
Query: 85 HILKSVSFEARDSEILAVVGPSGTGKSSLLRIISG---------RVRDQDFDPRSITVNC 135
L VS R E+ A++G +G GKS+L++I+SG + + S
Sbjct: 22 KALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSP---- 77
Query: 136 HQIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFS--ANFRLKGMSHKEKEDRVESLMDE 193
+ A I V QE +L+P L+V E + R + K R L+
Sbjct: 78 ----RDALAAGI-ATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLAR 132
Query: 194 LGLTHVAGSFVGD 206
LGL + VGD
Sbjct: 133 LGLDIDPDTLVGD 145
|
Length = 500 |
| >gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Score = 57.3 bits (139), Expect = 3e-09
Identities = 33/122 (27%), Positives = 57/122 (46%), Gaps = 19/122 (15%)
Query: 85 HILKSVSFEARDSEILAVVGPSGTGKSSLLRII-------SGRVRDQDFDPRSITVNCHQ 137
L ++ + D E + ++GPSG GK++ LR+I SGR+ R +T
Sbjct: 14 TALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIY---IGGRDVT----- 65
Query: 138 IKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLT 197
P + R I V Q L P +TV + + F +L+ + E ++RV + + L +
Sbjct: 66 -DLPPKDRDI-AMVFQNYALYPHMTVYDNIAF--GLKLRKVPKDEIDERVREVAELLQIE 121
Query: 198 HV 199
H+
Sbjct: 122 HL 123
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213 |
| >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Score = 58.9 bits (142), Expect = 3e-09
Identities = 52/230 (22%), Positives = 87/230 (37%), Gaps = 33/230 (14%)
Query: 86 ILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKKPAQLR 145
+L +S E E+LA++G SG GK++LLR I+G V+ R + P R
Sbjct: 20 VLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHKR 79
Query: 146 KICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLT----HVAG 201
+ + Q L P L V++ + F R + M + +RV + +GL H+
Sbjct: 80 GL-ALLFQNYALFPHLKVEDNVAFG--LRAQKMPKADIAERVADALKLVGLGDAAAHLPA 136
Query: 202 SFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIH 243
G + R +S LD+ + E +A++ + +L +
Sbjct: 137 QLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVT 196
Query: 244 QPSYRILQYISKFLILSRGSVVHYGSLELLEETINNLGYQIPTQLNAIEF 293
L K I+ G + +G + L Y P A EF
Sbjct: 197 HDQDDALTLADKAGIMKDGRLAAHGEPQAL--------YDAPADGFAAEF 238
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 |
| >gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter | Back alignment and domain information |
|---|
Score = 54.6 bits (132), Expect = 3e-09
Identities = 32/108 (29%), Positives = 48/108 (44%), Gaps = 19/108 (17%)
Query: 111 SSLLRIISGRVRDQD----FDPRSITVNCHQIKKPAQLRKICGFVAQEDNLLPLLTVKET 166
S+LL++I+G ++ D T + LRK G V Q+ L P LTV+E
Sbjct: 1 STLLKLITGLLQPTSGTILLDGEDGT----GLSSRKLLRKRIGVVFQDPQLFPELTVREN 56
Query: 167 LMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAGSFVGDEENRGISG 214
L F G+ KE + R E ++ +GL F+ E +SG
Sbjct: 57 LFF-------GLRDKEADARAEEALERVGLPD----FLDREPVGTLSG 93
|
ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119 |
| >gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter | Back alignment and domain information |
|---|
Score = 56.1 bits (136), Expect = 8e-09
Identities = 38/119 (31%), Positives = 55/119 (46%), Gaps = 19/119 (15%)
Query: 85 HILKSVSFEARDSEILAVVGPSGTGKSSLLRII-------SGRVRDQDFDPRSITVNCHQ 137
L VS + ++ E ++GPSG GK++LLR+I SG + D + IT
Sbjct: 14 VALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEIL---LDGKDIT----- 65
Query: 138 IKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGL 196
P R + V Q L P LTV E + F RLK + E ++RV +D + L
Sbjct: 66 -NLPPHKRPV-NTVFQNYALFPHLTVFENIAFG--LRLKKLPKAEIKERVAEALDLVQL 120
|
PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232 |
| >gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 56.2 bits (136), Expect = 8e-09
Identities = 47/208 (22%), Positives = 84/208 (40%), Gaps = 50/208 (24%)
Query: 96 DSEILAVVGPSGTGKSSLLRIISG---------RVRDQDFDPRSITVNCHQIKKPAQLRK 146
EI+A++GPSG GKS+LL +I+G + D H PA+ R
Sbjct: 24 AGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVD----------HTASPPAE-RP 72
Query: 147 ICGFVAQEDNLLPLLTVKETLMF--SANFRLKGMSHKEKEDRVESLMDELGL----THVA 200
+ + QE+NL LTV + + S +L E+ ++VE+ ++GL +
Sbjct: 73 V-SMLFQENNLFAHLTVAQNIGLGLSPGLKLNA----EQREKVEAAAAQVGLAGFLKRLP 127
Query: 201 GSFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSI 242
G G + R S LD +++ L++ + ++ T+++
Sbjct: 128 GELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVT 187
Query: 243 HQPSYRILQYISKFLILSRGSVVHYGSL 270
H P + + + L G + GS
Sbjct: 188 HHPE-DAARIADRVVFLDNGRIAAQGST 214
|
Length = 231 |
| >gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 55.7 bits (135), Expect = 8e-09
Identities = 33/112 (29%), Positives = 60/112 (53%), Gaps = 11/112 (9%)
Query: 86 ILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKKPAQLR 145
IL +S + EI+A+ G +G GK++L +I++G +++ SI +N I K + R
Sbjct: 15 ILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESS---GSILLNGKPI-KAKERR 70
Query: 146 KICGFVAQE-DNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGL 196
K G+V Q+ D L +V+E L+ LK + ++ E+++ +L L
Sbjct: 71 KSIGYVMQDVDYQLFTDSVREELLLG----LKELD--AGNEQAETVLKDLDL 116
|
Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205 |
| >gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 56.4 bits (136), Expect = 9e-09
Identities = 41/136 (30%), Positives = 61/136 (44%), Gaps = 19/136 (13%)
Query: 83 PLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQI---- 138
L +L ++F E +A++GPSG+GKS++LRI+ + + D I V Q+
Sbjct: 12 ILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRIL---MTLEPIDEGQIQVEGEQLYHMP 68
Query: 139 -----------KKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRV 187
K Q+R G V Q NL P TV + + A + GM+ E E R
Sbjct: 69 GRNGPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTE-APVLVLGMARAEAEKRA 127
Query: 188 ESLMDELGLTHVAGSF 203
L+D +GL A
Sbjct: 128 MELLDMVGLADKADHM 143
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252 |
| >gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 55.6 bits (134), Expect = 1e-08
Identities = 34/120 (28%), Positives = 59/120 (49%), Gaps = 7/120 (5%)
Query: 86 ILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPR-SITVNCHQIKK-PAQ 143
+L +V+F EI+ ++GPSG GKS+LL + G + F + +N ++ PA
Sbjct: 17 LLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGAL-AGQFSCTGELWLNEQRLDMLPAA 75
Query: 144 LRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAGSF 203
R+I G + Q+ L P L+V + L+F+ LKG + + + ++ GL
Sbjct: 76 QRQI-GILFQDALLFPHLSVGQNLLFALPATLKG---NARRNAANAALERSGLDGAFHQD 131
|
Length = 213 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 55.7 bits (135), Expect = 1e-08
Identities = 55/250 (22%), Positives = 99/250 (39%), Gaps = 74/250 (29%)
Query: 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLR 115
++ RN+S++ PN I + L +VS R E +A++G G+GKS+LL+
Sbjct: 2 RIEFRNVSFSY-PNQEIPA------------LDNVSLTIRAGEKVAIIGRVGSGKSTLLK 48
Query: 116 II-------SGRVRDQDFDPRSITVNCHQIKKPAQLRKICGFVAQEDNLLPLLTVKETLM 168
++ SG V D R + PA LR+ G+V Q D L T+++ +
Sbjct: 49 LLAGLYKPTSGSVLLDGTDIRQL--------DPADLRRNIGYVPQ-DVTLFYGTLRDNIT 99
Query: 169 FSANFRLKGMSHKEKEDRVESLM----DELGLTHVAG--SFVGDEENRGISG-------- 214
G + E + + + H G +G E RG+SG
Sbjct: 100 L-------GAPLADDERILRAAELAGVTDFVNKHPNGLDLQIG-ERGRGLSGGQRQAVAL 151
Query: 215 -------------------LDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISK 255
+D S ++ E L + +T+++ H+PS +L + +
Sbjct: 152 ARALLNDPPILLLDEPTSAMDMNSEERLKERLRQL--LGDKTLIIITHRPS--LLDLVDR 207
Query: 256 FLILSRGSVV 265
+++ G +V
Sbjct: 208 IIVMDSGRIV 217
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 56.9 bits (138), Expect = 2e-08
Identities = 54/230 (23%), Positives = 95/230 (41%), Gaps = 60/230 (26%)
Query: 86 ILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKK--PAQ 143
+L+ +S E E +A+VG SG+GKS+LL+++ G + Q I ++ + A
Sbjct: 488 VLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQ---GRILLDGVDLNDIDLAS 544
Query: 144 LRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMD----------E 193
LR+ G+V Q+ L ++ N L G E+ +E+
Sbjct: 545 LRRQVGYVLQDPFLF-----SGSIRE--NIAL-GNPEATDEEIIEAAQLAGAHEFIENLP 596
Query: 194 LGLTHVAGSFVGDEENRGISG--------------------LD-STSAL------QVIEL 226
+G G E +SG LD +TSAL +++
Sbjct: 597 MGYDTPVG-----EGGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQN 651
Query: 227 LASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGSL-ELLEE 275
L + + RTV++ H+ S ++ + ++L +G +V GS ELL +
Sbjct: 652 LLQI--LQGRTVIIIAHRLS--TIRSADRIIVLDQGKIVEQGSHEELLAQ 697
|
Length = 709 |
| >gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 55.6 bits (134), Expect = 2e-08
Identities = 58/226 (25%), Positives = 98/226 (43%), Gaps = 41/226 (18%)
Query: 76 LLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRS--ITV 133
L + L +++F A + +AV+GP+G GKS+L R +G ++ P S + +
Sbjct: 9 LCYSYSGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILK-----PTSGSVLI 63
Query: 134 NCHQIKKP--AQLRKICGFVAQE-DNLLPLLTVKETLMFS-ANFRLKGMSHKEKEDRVES 189
I K ++RK G V Q D+ + TV++ + F N G+ + RV S
Sbjct: 64 RGEPITKENIREVRKFVGLVFQNPDDQIFSPTVEQDIAFGPINL---GLDEETVAHRVSS 120
Query: 190 LMDELGLTH----VAGSFVGDEENR----GI--------------SGLDSTSALQVIELL 227
+ LGL V G E+ R G+ +GLD ++I+ L
Sbjct: 121 ALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFL 180
Query: 228 ASMAKAKQRTVVLSIHQPSY--RILQYISKFLILSRGSVVHYGSLE 271
+ + TV+ S HQ + YI ++ +G +V YG++E
Sbjct: 181 NDLPETYGMTVIFSTHQLDLVPEMADYI---YVMDKGRIVAYGTVE 223
|
Length = 277 |
| >gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 55.1 bits (133), Expect = 3e-08
Identities = 33/111 (29%), Positives = 59/111 (53%), Gaps = 8/111 (7%)
Query: 86 ILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKKPAQLR 145
L+ ++ E+L V+GPSG GK++LL +I+G V Q SIT++ ++ P R
Sbjct: 16 ALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQH---GSITLDGKPVEGPGAER 72
Query: 146 KICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGL 196
G V Q + LLP V++ + F +L G+ ++ + ++ ++GL
Sbjct: 73 ---GVVFQNEGLLPWRNVQDNVAFG--LQLAGVEKMQRLEIAHQMLKKVGL 118
|
Length = 255 |
| >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 55.9 bits (135), Expect = 3e-08
Identities = 34/121 (28%), Positives = 60/121 (49%), Gaps = 9/121 (7%)
Query: 90 VSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQD----FDPRSITVNCHQIKKPAQLR 145
F + A+ G SG+GK++L+R+I+G R + + R++ + I P + R
Sbjct: 16 ADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKR 75
Query: 146 KICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAGSFVG 205
+I G+V QE L P L+V+ L + +K E+ E +++ LG+ H+ G G
Sbjct: 76 RI-GYVFQEARLFPHLSVRGNL----RYGMKRARPSERRISFERVIELLGIGHLLGRLPG 130
Query: 206 D 206
Sbjct: 131 R 131
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354 |
| >gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 54.6 bits (131), Expect = 3e-08
Identities = 57/222 (25%), Positives = 101/222 (45%), Gaps = 48/222 (21%)
Query: 85 HILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRS-----ITVNCHQI- 138
H +K VS + ++ + A++GPSG GKS++LR I+ R D P + I ++ I
Sbjct: 18 HAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSIN---RMHDLVPSARVTGKILLDDTDIY 74
Query: 139 ---KKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDR-VES----- 189
P +R+ G V Q+ N P +++ + ++ A ++L G ++ + D VES
Sbjct: 75 DRGVDPVSIRRRVGMVFQKPNPFPAMSIYDNVI--AGYKLNGRVNRSEADEIVESSLKRV 132
Query: 190 -LMDELG--LTHVAGSFVGDEENR------------------GISGLDSTSALQVIELLA 228
L DE+ L A G ++ R S LD S L++ EL+
Sbjct: 133 ALWDEVKDRLKSNAMELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIE 192
Query: 229 SMAKAKQRTVVLSIH--QPSYRILQYISKFLILSRGSVVHYG 268
+ ++ T+++ H Q + R+ Y + F + G +V G
Sbjct: 193 EL--KEKYTIIIVTHNMQQAARVSDYTAFFYM---GDLVECG 229
|
Length = 252 |
| >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Score = 53.6 bits (129), Expect = 4e-08
Identities = 48/192 (25%), Positives = 82/192 (42%), Gaps = 47/192 (24%)
Query: 86 ILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQ-----------DFDPRSITVN 134
+LK ++F A E+LA++G +G GKS+LL ++G +R Q D+ + +
Sbjct: 7 VLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLL-- 64
Query: 135 CHQIKKPAQLRKICGFVAQE-DNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDE 193
+ R+ G V Q+ D+ L V + + F G+S E E RV +
Sbjct: 65 --------ERRQRVGLVFQDPDDQLFAADVDQDVAFGP--LNLGLSEAEVERRVREALTA 114
Query: 194 LGLTHVAG----SFVGDEENR----GI--------------SGLDSTSALQVIELLASMA 231
+G + + G E+ R G +GLD Q++ +L +
Sbjct: 115 VGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILRRL- 173
Query: 232 KAKQRTVVLSIH 243
+A+ TVV+S H
Sbjct: 174 RAEGMTVVISTH 185
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190 |
| >gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Score = 53.5 bits (129), Expect = 4e-08
Identities = 31/118 (26%), Positives = 51/118 (43%), Gaps = 14/118 (11%)
Query: 86 ILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITV---NCHQIKKPA 142
+ + +SF E L V GP+G GK++LLRI++G +R P S V ++
Sbjct: 15 LFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLR-----PDSGEVRWNGTALAEQRD 69
Query: 143 QLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVA 200
+ + ++ L P L+ E L F A H + +E + +GLT
Sbjct: 70 EPHRNILYLGHLPGLKPELSALENLHFWAAI------HGGAQRTIEDALAAVGLTGFE 121
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198 |
| >gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Score = 53.9 bits (130), Expect = 4e-08
Identities = 47/200 (23%), Positives = 84/200 (42%), Gaps = 39/200 (19%)
Query: 82 VPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRII-------SGRVRDQDFDPRS--IT 132
V L +LK+VS E +A+ GPSG GKS+LL+ + SGR+ +
Sbjct: 19 VRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQ 78
Query: 133 VNCHQIKKPAQLRK-ICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLM 191
+ ++ ++R+ G+V+Q ++P ++ E + +G+ + R L+
Sbjct: 79 ASPREV---LEVRRKTIGYVSQFLRVIPRVSALEVVAEPL--LERGVPREAARARARELL 133
Query: 192 DELG----LTHVAGS-FVGDEENR------------------GISGLDSTSALQVIELLA 228
L L H+ + F G E+ R + LD+ + V+EL+A
Sbjct: 134 ARLNIPERLWHLPPATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIA 193
Query: 229 SMAKAKQRTVVLSIHQPSYR 248
AKA+ ++ H R
Sbjct: 194 E-AKARGAALIGIFHDEEVR 212
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224 |
| >gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Score = 54.1 bits (131), Expect = 4e-08
Identities = 56/228 (24%), Positives = 95/228 (41%), Gaps = 61/228 (26%)
Query: 87 LKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVR----DQDFDPRSIT-VNCHQIKKP 141
L +S E+ ++GP+G GK++++ +I+G+ R F +T + HQI
Sbjct: 18 LNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQI--- 74
Query: 142 AQL---RKICGFVAQEDNLLPLLTVKETLMFSAN----------FRLKGMSHKEKEDRVE 188
A+ RK F Q+ + LTV E L + FRL E++DR+E
Sbjct: 75 ARAGIGRK---F--QKPTVFENLTVFENLELALPRDKSVFASLFFRLSA----EEKDRIE 125
Query: 189 SLMDELGLTHVAGSFVG-------------------------DEENRGISGLDSTSALQV 223
+++ +GL A G DE ++G+ +
Sbjct: 126 EVLETIGLADEADRLAGLLSHGQKQWLEIGMLLMQDPKLLLLDEP---VAGMTDEETEKT 182
Query: 224 IELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGSLE 271
ELL S+ A + +VV+ H + + K +L +GSV+ GSL+
Sbjct: 183 AELLKSL--AGKHSVVVVEHDMEF-VRSIADKVTVLHQGSVLAEGSLD 227
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 242 |
| >gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 53.4 bits (129), Expect = 5e-08
Identities = 22/87 (25%), Positives = 37/87 (42%), Gaps = 8/87 (9%)
Query: 86 ILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITV---NCHQIKKPA 142
+ +SF E L + GP+G GK++LLRI++G +R P + V
Sbjct: 17 LFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLR-----PDAGEVYWQGEPIQNVRE 71
Query: 143 QLRKICGFVAQEDNLLPLLTVKETLMF 169
+ ++ + + LT E L F
Sbjct: 72 SYHQALLYLGHQPGIKTELTALENLHF 98
|
Length = 209 |
| >gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 54.5 bits (131), Expect = 5e-08
Identities = 62/233 (26%), Positives = 101/233 (43%), Gaps = 52/233 (22%)
Query: 85 HILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPR---SITVNCHQIKKP 141
H LK VS + + + A++GPSG GKS+ LR ++ R+ D+ R S+ ++ I +
Sbjct: 59 HALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLN-RMNDRIKAARIDGSVELDGQDIYQD 117
Query: 142 A----QLRKICGFVAQEDNLLPLLTVKETLMFSAN----------FRLKGMSHKEKED-- 185
+LRK G V Q N P +++E + + RL G K+ ED
Sbjct: 118 GVNLVELRKRVGMVFQSPNPFP-KSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDEL 176
Query: 186 -----RVESLMDE---------LGLTH-------VAGSFVGDEE----NRGISGLDSTSA 220
R +L DE LGL+ +A D E + S LD +
Sbjct: 177 VERSLRQAALWDEVNDRLDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIAT 236
Query: 221 LQVIELLASMAKAKQRTVVLSIH--QPSYRILQYISKFLILSRGSVVHYGSLE 271
++ +L+ + A++ TVV+ H Q + RI + F L+ G +V Y +
Sbjct: 237 SKIEDLIEEL--AEEYTVVVVTHNMQQAARISDQTAVF--LTGGELVEYDDTD 285
|
Length = 305 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 52.7 bits (127), Expect = 6e-08
Identities = 48/219 (21%), Positives = 91/219 (41%), Gaps = 48/219 (21%)
Query: 57 VTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRI 116
+++ N+S++ +LK++S E + E +A++G SG+GKS+LL++
Sbjct: 1 LSINNVSFSYPEQEQ-------------QVLKNLSLELKQGEKIALLGRSGSGKSTLLQL 47
Query: 117 ISGRVRDQDFDPRS--ITVNCHQIKK-PAQLRKICGFVAQEDNLLPLLTVKETLMFSANF 173
++G D P+ IT++ + L + + Q L TL +
Sbjct: 48 LTG-----DLKPQQGEITLDGVPVSDLEKALSSLISVLNQRPYLF-----DTTLRNNLGR 97
Query: 174 RLKGMSHKEKEDRVESLMDELGLTHV----AGSFVGDEENRGISGLDSTSALQVIELLAS 229
R G E++ L L + A + DE GLD + Q++ L+
Sbjct: 98 RFSG---GERQ--------RLALARILLQDAPIVLLDEPT---VGLDPITERQLLSLIFE 143
Query: 230 MAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYG 268
+ K K T++ H ++++ K L L G ++ G
Sbjct: 144 VLKDK--TLIWITHH--LTGIEHMDKILFLENGKIIMQG 178
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.5 bits (129), Expect = 6e-08
Identities = 59/225 (26%), Positives = 99/225 (44%), Gaps = 45/225 (20%)
Query: 85 HILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPR---SITVNCHQIKKP 141
LK ++ + ++++ A++GPSG GKS+ LR ++ R+ D + + ++ I K
Sbjct: 17 QALKKINLDIEENQVTALIGPSGCGKSTFLRTLN-RMNDLIPSVKIEGEVLLDGQDIYKS 75
Query: 142 A----QLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDR-VE------SL 190
QLRK G V Q+ N P +++ + + + R G+ K+K D VE +L
Sbjct: 76 DIDVNQLRKRVGMVFQQPNPFP-MSIYDNVAYGP--RTHGIKDKKKLDEIVEKSLKGAAL 132
Query: 191 MDELG--LTHVAGSFVGDEENR------------------GISGLDSTSALQVIELLASM 230
DE+ L A G ++ R S LD S L++ EL+ +
Sbjct: 133 WDEVKDRLKKSALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQEL 192
Query: 231 AKAKQRTVVLSIH--QPSYRILQYISKFLILSRGSVVHYGSLELL 273
K T+V+ H Q + RI + FL G +V +G L
Sbjct: 193 --KKDYTIVIVTHNMQQASRISDKTAFFLN---GEIVEFGDTVDL 232
|
Length = 250 |
| >gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.9 bits (129), Expect = 6e-08
Identities = 54/226 (23%), Positives = 97/226 (42%), Gaps = 46/226 (20%)
Query: 85 HILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDP-----RSITVNCHQIK 139
+K+V+ + + + A++GPSG GK++ LR I+ R D P I ++ I
Sbjct: 18 QAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAIN---RMHDLTPGARVTGRILLDGQDIY 74
Query: 140 KPA----QLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHK-------EKEDRVE 188
P +R+ G V Q+ N P ++V + ++ A +L G+ + E+ R
Sbjct: 75 GPRVDPVAMRRRVGMVFQKPNPFPTMSVFDNVV--AGLKLAGIRDRDHLMEVAERSLRGA 132
Query: 189 SLMDELG--LTHVAGSFVGDEENR------------------GISGLDSTSALQVIELLA 228
+L DE+ L A G ++ R S LD S ++ +L+
Sbjct: 133 ALWDEVKDRLKTPATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMT 192
Query: 229 SMAKAKQRTVVL-SIHQPSYRILQYISKFLILSRGSVVHYGSLELL 273
+ K +V ++HQ + R+ S FL+ G +V +G + L
Sbjct: 193 DLKKVTTIIIVTHNMHQAA-RVSDTTSFFLV---GDLVEHGPTDQL 234
|
Length = 252 |
| >gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Score = 53.0 bits (128), Expect = 7e-08
Identities = 32/119 (26%), Positives = 58/119 (48%), Gaps = 13/119 (10%)
Query: 85 HILKSVSFEARDSEILAVVGPSGTGKSSLLRII-------SGRVRDQDFDPRSITVNCHQ 137
IL ++ ++ A++G SG+GKS+LL II SG+V + + +
Sbjct: 12 VILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGQETPPL----NS 67
Query: 138 IKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGL 196
K R+ G++ Q L+ TV+E L + K +S KEK ++ + ++++GL
Sbjct: 68 KKASKFRREKLGYLFQNFALIENETVEENLDLG--LKYKKLSKKEKREKKKEALEKVGL 124
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206 |
| >gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system | Back alignment and domain information |
|---|
Score = 52.9 bits (127), Expect = 7e-08
Identities = 52/213 (24%), Positives = 89/213 (41%), Gaps = 42/213 (19%)
Query: 83 PLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFD-PRS--ITVNC--HQ 137
P+H ++F EI A+VGPSG+GKS+LL +I+G F+ P+S + +N
Sbjct: 14 PMHF--DLTFAQ--GEITAIVGPSGSGKSTLLNLIAG------FETPQSGRVLINGVDVT 63
Query: 138 IKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLT 197
PA + + QE+NL LTV++ + + LK E +E + +GL
Sbjct: 64 AAPPA--DRPVSMLFQENNLFAHLTVEQNVGLGLSPGLK--LTAEDRQAIEVALARVGLA 119
Query: 198 ----HVAGSFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQ 235
+ G G E R + LD ++++L+ + +
Sbjct: 120 GLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETK 179
Query: 236 RTVVLSIHQPSYRILQYISKFLILSRGSVVHYG 268
TV++ HQP + + + L G + G
Sbjct: 180 MTVLMVTHQPE-DAKRLAQRVVFLDNGRIAAQG 211
|
Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.4 bits (128), Expect = 8e-08
Identities = 51/225 (22%), Positives = 98/225 (43%), Gaps = 49/225 (21%)
Query: 87 LKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPR-----SITVNCHQIKKP 141
L ++ +++I A++GPSG GKS+ LR ++ R D + ++ I
Sbjct: 20 LNDINLPIYENKITALIGPSGCGKSTFLRCLN---RMNDLISNVKIEGEVLLDGKNIYDK 76
Query: 142 ----AQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRV-------ESL 190
+LRK G V Q+ N P +++ + + + R+ G+ K++ D++ +L
Sbjct: 77 DVDVVELRKRVGMVFQKPNPFP-MSIYDNVAYGP--RIHGIKDKKELDKIVEWALKKAAL 133
Query: 191 MDELG--LTHVAGSFVGDEENR------------------GISGLDSTSALQVIELLASM 230
DE+ L A G ++ R S LD S L++ +L+ +
Sbjct: 134 WDEVKDDLKKSALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVEL 193
Query: 231 AKAKQRTVVLSIH--QPSYRILQYISKFLILSRGSVVHYGSLELL 273
K+ T+V+ H Q + R+ Y + FL+ G ++ + E +
Sbjct: 194 --KKEYTIVIVTHNMQQASRVSDYTAFFLM---GDLIEFNKTEKI 233
|
Length = 251 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 53.0 bits (128), Expect = 1e-07
Identities = 62/235 (26%), Positives = 98/235 (41%), Gaps = 70/235 (29%)
Query: 86 ILKSVSFEARDSEILAVVGPSGTGKSSLLRII-------SGRVRDQDFDPRSITVNCHQI 138
+LK VSF + +A+VGPSG+GKS++LR++ SG + D R +T++
Sbjct: 16 VLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLD---- 71
Query: 139 KKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKE-----------DRV 187
LR+ G V Q+ L +T+ + N R ++E D++
Sbjct: 72 ----SLRRAIGVVPQDTVLF-----NDTIGY--NIRYGRPDATDEEVIEAAKAAQIHDKI 120
Query: 188 ESLMD-------ELGLTHVAGSFVGDEENR-----------GISGLD-STSALQVI---E 225
D E GL G E+ R I LD +TSAL E
Sbjct: 121 MRFPDGYDTIVGERGL-----KLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTERE 175
Query: 226 LLASMAK-AKQRTVVLSIHQPSYRILQYIS---KFLILSRGSVVHYGS-LELLEE 275
+ A++ +K RT ++ H+ L I K ++L G +V G+ ELL +
Sbjct: 176 IQAALRDVSKGRTTIVIAHR-----LSTIVNADKIIVLKDGRIVERGTHEELLAK 225
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 53.1 bits (128), Expect = 1e-07
Identities = 41/162 (25%), Positives = 68/162 (41%), Gaps = 28/162 (17%)
Query: 57 VTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRI 116
+ NLSY++ +L VS + R E+LA++GP+G GKS+LL+
Sbjct: 2 IRAENLSYSLAGRR---------------LLDGVSLDLRPGEVLAILGPNGAGKSTLLKA 46
Query: 117 ISGRVRDQDFDPRS--ITVNCHQI--KKPAQLRKICGFVAQEDNLLPLLTVKETLMFSAN 172
+SG + P S +T+N + P +L + + Q +L TV+E +
Sbjct: 47 LSG-----ELSPDSGEVTLNGVPLNSWPPEELARHRAVLPQNSSLAFPFTVQEVVQMGRI 101
Query: 173 FRLKGMSHKEKEDRVESLMDELGLTHVAGSFV----GDEENR 210
G +E E + L+ +AG G E+ R
Sbjct: 102 PHRSGREPEEDERIAAQALAATDLSGLAGRDYRTLSGGEQQR 143
|
Length = 259 |
| >gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 53.2 bits (128), Expect = 1e-07
Identities = 64/240 (26%), Positives = 108/240 (45%), Gaps = 59/240 (24%)
Query: 87 LKSVSFEARDSEILAVVGPSGTGKSSL-------LRIISGRV----RDQDFDPRSITVNC 135
LK ++F+A E++A++GP+G GKS+L L+ SG V +D +S+
Sbjct: 18 LKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLL--- 74
Query: 136 HQIKKPAQLRKICGFVAQE-DNLLPLLTVKETLMFSA-NFRLKGMSHKEKEDRVESLMDE 193
++RK G V Q D+ L TV+E + F N G+S +E E RV+ +
Sbjct: 75 -------EVRKTVGIVFQNPDDQLFAPTVEEDVAFGPLNL---GLSKEEVEKRVKEALKA 124
Query: 194 LGLT--------HVAGS-----------------FVGDEENRGISGLDSTSALQVIELLA 228
+G+ H++G V DE SGLD A Q+++LL
Sbjct: 125 VGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPT---SGLDPMGASQIMKLLY 181
Query: 229 SMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGSLELL---EETINNLGYQIP 285
+ K + T+++S H + Y K ++S G ++ G+ + + ETI ++P
Sbjct: 182 DLNK-EGITIIISTHDVDL-VPVYADKVYVMSDGKIIKEGTPKEVFSDIETIRKANLRLP 239
|
Length = 275 |
| >gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system | Back alignment and domain information |
|---|
Score = 53.0 bits (128), Expect = 1e-07
Identities = 35/119 (29%), Positives = 60/119 (50%), Gaps = 17/119 (14%)
Query: 87 LKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITV-----NCHQIKKP 141
+ VS + R+ EI ++G SG+GKS+LLR I+ + +P S V + + +
Sbjct: 40 VNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLI-----EPTSGKVLIDGQDIAAMSR- 93
Query: 142 AQLRKI----CGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGL 196
+LR++ V Q LLP TV E + F ++G+ E+E+R ++ +GL
Sbjct: 94 KELRELRRKKISMVFQSFALLPHRTVLENVAFG--LEVQGVPRAEREERAAEALELVGL 150
|
This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269 |
| >gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.6 bits (126), Expect = 1e-07
Identities = 36/132 (27%), Positives = 65/132 (49%), Gaps = 11/132 (8%)
Query: 86 ILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIK---KPA 142
+++ VS EI+ ++GP+G GK++ ++ G V D +I ++ I A
Sbjct: 18 VVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPR---DAGNIIIDDEDISLLPLHA 74
Query: 143 QLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHV--- 199
+ R+ G++ QE ++ L+V + LM R +S +++EDR LM+E + H+
Sbjct: 75 RARRGIGYLPQEASIFRRLSVYDNLMAVLQIR-DDLSAEQREDRANELMEEFHIEHLRDS 133
Query: 200 -AGSFVGDEENR 210
S G E R
Sbjct: 134 MGQSLSGGERRR 145
|
Length = 241 |
| >gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Score = 53.8 bits (130), Expect = 2e-07
Identities = 65/255 (25%), Positives = 97/255 (38%), Gaps = 71/255 (27%)
Query: 80 PKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRII-------SGRVR------DQDF 126
P ILK +SF + E L ++GPSG+GKS+L R++ SG VR Q +
Sbjct: 345 PGQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQ-W 403
Query: 127 DPRSITVNCHQIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKE-- 184
D QL + G++ Q+ L T+ E + A F + K E
Sbjct: 404 DRE-------------QLGRHIGYLPQDVELFD-GTIAENI---ARFGEEADPEKVIEAA 446
Query: 185 -------------DRVESLMDELGLTHVAG---------SFVG-------DEENRGISGL 215
++ + E G T G + G DE N S L
Sbjct: 447 RLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVVLDEPN---SNL 503
Query: 216 DSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGSLELLEE 275
DS + + + AKA+ TVV+ H+PS L + K L+L G + +G EE
Sbjct: 504 DSEGEAALAAAILA-AKARGGTVVVIAHRPS--ALASVDKILVLQDGRIAAFGP---REE 557
Query: 276 TINNLGYQIPTQLNA 290
+ + P Q
Sbjct: 558 VLAKVLRPPPRQAKP 572
|
Length = 580 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 52.2 bits (126), Expect = 2e-07
Identities = 25/71 (35%), Positives = 42/71 (59%), Gaps = 5/71 (7%)
Query: 86 ILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIK--KPAQ 143
+L+ +S + E +A+VGPSG+GKS+L+ +I R D D I ++ H ++ A
Sbjct: 17 VLRDISLDIPAGETVALVGPSGSGKSTLVNLIP---RFYDVDSGRILIDGHDVRDYTLAS 73
Query: 144 LRKICGFVAQE 154
LR+ G V+Q+
Sbjct: 74 LRRQIGLVSQD 84
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 53.5 bits (129), Expect = 2e-07
Identities = 57/276 (20%), Positives = 102/276 (36%), Gaps = 73/276 (26%)
Query: 45 SLPPQRLKTTCK----------VTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEA 94
+ Q+ + T + +RN+S+ LK+ +
Sbjct: 315 DILDQKPEVTFPDEQTATTGQALELRNVSFTYPGQ-------------QTKALKNFNLTL 361
Query: 95 RDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIK--KPAQLRKICGFVA 152
E +A++G SG+GKS+LL+++ D SIT+N +I LR+ +
Sbjct: 362 AQGEKVAILGRSGSGKSTLLQLL---AGAWDPQQGSITLNGVEIASLDEQALRETISVLT 418
Query: 153 Q---------EDNLL---PLLTVKETLMFSANFRLKGMSH--KEKEDRVESLMDELGLTH 198
Q DNL P + +E A + G+ + D + + + E G
Sbjct: 419 QRVHLFSGTLRDNLRLANPDASDEE---LWAALQQVGLEKLLESAPDGLNTWLGEGGRR- 474
Query: 199 VAGSFVGDEENR-GI-----------------SGLDSTSALQVIELLASMAKAKQRTVVL 240
G E R + GLD + QV+ LL A+ +T+++
Sbjct: 475 ----LSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLF--EHAEGKTLLM 528
Query: 241 SIHQPSYRILQYISKFLILSRGSVVHYG-SLELLEE 275
H+ R L+ + + ++L G ++ G ELL
Sbjct: 529 VTHR--LRGLERMDRIIVLDNGKIIEEGTHAELLAN 562
|
Length = 573 |
| >gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 52.8 bits (127), Expect = 2e-07
Identities = 34/118 (28%), Positives = 60/118 (50%), Gaps = 15/118 (12%)
Query: 87 LKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRS--ITVNCHQIKK--PA 142
+ S + + EI ++G SG+GKS+L+R+++ + +P I V+ I K A
Sbjct: 44 VNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLI-----EPTRGEILVDGKDIAKLSAA 98
Query: 143 QLRKI----CGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGL 196
+LR++ V Q LLP TV E + F ++G+ E+E+R ++ +GL
Sbjct: 99 ELRELRRKKISMVFQSFALLPHRTVLENVAFG--LEVQGVPKAEREERALEALELVGL 154
|
Length = 386 |
| >gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 52.5 bits (127), Expect = 3e-07
Identities = 40/130 (30%), Positives = 57/130 (43%), Gaps = 22/130 (16%)
Query: 80 PKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRII-------SGRVRDQDFDPRSIT 132
+H L +VS EI V+G SG GKS+L+R I SGRV D + +T
Sbjct: 14 GGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVL---VDGQDLT 70
Query: 133 VNCHQIKKPAQL----RKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVE 188
+L R+I G + Q NLL TV + + L G E + RV
Sbjct: 71 A-----LSEKELRKARRQI-GMIFQHFNLLSSRTVFDNVALP--LELAGTPKAEIKARVT 122
Query: 189 SLMDELGLTH 198
L++ +GL+
Sbjct: 123 ELLELVGLSD 132
|
Length = 343 |
| >gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.8 bits (124), Expect = 3e-07
Identities = 57/224 (25%), Positives = 94/224 (41%), Gaps = 51/224 (22%)
Query: 85 HILKSVSFEARDSEILAVVGPSGTGKSSLLRI------------ISGRVRDQDFDPRSIT 132
H++K V + + + A++GPSG GKS+LLR + G VR + S
Sbjct: 18 HVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPD 77
Query: 133 VNCHQIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVE---- 188
V+ P ++R+ G V Q N P LT+ + + S KE ++RVE
Sbjct: 78 VD------PIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALK 131
Query: 189 --SLMDELG--LTHVAGSFVGDEENRGI------------------SGLDSTSALQVIEL 226
+L DE+ L + G + R + + +D ++ EL
Sbjct: 132 KAALWDEVKDRLNDYPSNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEEL 191
Query: 227 LASMAKAKQRTVVLSIHQPSY--RILQYISKFLILSRGSVVHYG 268
L + K+ T+VL H P+ R+ Y++ FL L G ++ G
Sbjct: 192 LFEL--KKEYTIVLVTHSPAQAARVSDYVA-FLYL--GKLIEVG 230
|
Length = 253 |
| >gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Score = 52.2 bits (125), Expect = 3e-07
Identities = 37/108 (34%), Positives = 56/108 (51%), Gaps = 6/108 (5%)
Query: 86 ILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKKPAQL- 144
++ +SF E ++GP+G GKS++ R++ G + D ITV + A+L
Sbjct: 19 VVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISP---DRGKITVLGEPVPSRARLA 75
Query: 145 RKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMD 192
R G V Q DNL P TV+E L+ R GMS +E E + SL++
Sbjct: 76 RVAIGVVPQFDNLDPEFTVRENLLVFG--RYFGMSTREIEAVIPSLLE 121
|
This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303 |
| >gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Score = 52.1 bits (125), Expect = 4e-07
Identities = 37/108 (34%), Positives = 54/108 (50%), Gaps = 6/108 (5%)
Query: 86 ILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKKPAQL- 144
++ +SF E ++GP+G GKS++ R+I G D ITV + A+L
Sbjct: 56 VVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSP---DAGKITVLGVPVPARARLA 112
Query: 145 RKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMD 192
R G V Q DNL TV+E L+ R GMS +E E + SL++
Sbjct: 113 RARIGVVPQFDNLDLEFTVRENLLVFG--RYFGMSTREIEAVIPSLLE 158
|
Length = 340 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 52.7 bits (127), Expect = 4e-07
Identities = 34/113 (30%), Positives = 58/113 (51%), Gaps = 12/113 (10%)
Query: 86 ILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSIT-VNCHQIKKPAQL 144
+LK + F E+ A++G +G GKS+L++II+G + D I C ++ PA+
Sbjct: 26 VLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAG-IVPPDSGTLEIGGNPCARL-TPAKA 83
Query: 145 RKICG--FVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELG 195
++ G V QE L P L+VKE ++ F L + +++ L+ LG
Sbjct: 84 HQL-GIYLVPQEPLLFPNLSVKENIL----FGLPK--RQASMQKMKQLLAALG 129
|
Length = 510 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 52.9 bits (128), Expect = 4e-07
Identities = 51/223 (22%), Positives = 90/223 (40%), Gaps = 57/223 (25%)
Query: 87 LKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQD----FDPRSITVNCHQIKKPA 142
L +VS R E +A++G G+GKS+LL+++ G + + D V+ QI PA
Sbjct: 481 LDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLD----GVDIRQI-DPA 535
Query: 143 QLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLM----DELGLTH 198
LR+ G+V Q D L T+++ + G + + E+ + + E H
Sbjct: 536 DLRRNIGYVPQ-DPRLFYGTLRDNIAL-------GAPYADDEEILRAAELAGVTEFVRRH 587
Query: 199 VAGSF---VGDEENRGISG---------------------------LDSTSALQVIELLA 228
G +G E R +SG +D+ S + + L
Sbjct: 588 PDG-LDMQIG-ERGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLK 645
Query: 229 SMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGSLE 271
K T+VL H+ S +L + + +++ G +V G +
Sbjct: 646 RWLAGK--TLVLVTHRTS--LLDLVDRIIVMDNGRIVADGPKD 684
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins | Back alignment and domain information |
|---|
Score = 50.6 bits (122), Expect = 5e-07
Identities = 31/101 (30%), Positives = 49/101 (48%), Gaps = 20/101 (19%)
Query: 80 PKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDF-DPRS--ITVNCH 136
P VP ILK +S + +A+VG SG GKS+++ ++ + F DP S I ++
Sbjct: 14 PDVP--ILKGLSLTIPPGKTVALVGSSGCGKSTVVSLL------ERFYDPTSGEILLDGV 65
Query: 137 QIKK--PAQLRKICGFVAQEDNLLPLL---TVKETLMFSAN 172
I+ LR G V+QE P+L T+ E + +
Sbjct: 66 DIRDLNLRWLRSQIGLVSQE----PVLFDGTIAENIRYGKP 102
|
MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238 |
| >gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Score = 51.5 bits (124), Expect = 6e-07
Identities = 32/114 (28%), Positives = 55/114 (48%), Gaps = 10/114 (8%)
Query: 86 ILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKK-PAQL 144
++ ++ + E L ++GPSG GK+++LR+I+G + D I ++ I PA+
Sbjct: 29 VISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGF---ETPDSGRIMLDGQDITHVPAEN 85
Query: 145 RKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTH 198
R + V Q L P +TV E + F R++ E RV M+ L +
Sbjct: 86 RHV-NTVFQSYALFPHMTVFENVAFG--LRMQKTPAAEITPRV---MEALRMVQ 133
|
Length = 375 |
| >gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA | Back alignment and domain information |
|---|
Score = 50.4 bits (121), Expect = 6e-07
Identities = 37/156 (23%), Positives = 61/156 (39%), Gaps = 23/156 (14%)
Query: 57 VTVRNLS--YAIQPNTS----ILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGK 110
+ V NLS Y + L L + LK +SF EI+ +GP+G GK
Sbjct: 1 IEVSNLSKSYRVYSKEPGLIGSLKSLFKRKYREVEALKGISFTIEKGEIVGFIGPNGAGK 60
Query: 111 SSLLRII-------SGRVRDQDFDPRSITVNCHQIKKPAQLRKICGFVAQEDNLLPLLTV 163
++ L+I+ SG VR P ++ LR+I Q+ L L V
Sbjct: 61 TTTLKILSGLLQPTSGEVRVAGLVPWK--------RRKKFLRRIGVVFGQKTQLWWDLPV 112
Query: 164 KETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHV 199
++ A + + + R++ L + L L +
Sbjct: 113 IDSFYLLA--AIYDLPPARFKKRLDELSELLDLEEL 146
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236 |
| >gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.2 bits (123), Expect = 8e-07
Identities = 38/128 (29%), Positives = 55/128 (42%), Gaps = 33/128 (25%)
Query: 85 HILKSVSFEARDSEILAVVGPSGTGKSSLLRIISG--------------RVRDQDFDPRS 130
I K ++ + + E + VGPSG GKS+LLR+I+G R+ D
Sbjct: 17 VISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMND------- 69
Query: 131 ITVNCHQIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESL 190
PA+ R + G V Q L P L+V E + F +L G +E RV +
Sbjct: 70 --------VPPAE-RGV-GMVFQSYALYPHLSVAENMSFG--LKLAGAKKEEINQRVNQV 117
Query: 191 MDELGLTH 198
+ L L H
Sbjct: 118 AEVLQLAH 125
|
Length = 369 |
| >gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 51.9 bits (125), Expect = 8e-07
Identities = 24/73 (32%), Positives = 39/73 (53%), Gaps = 15/73 (20%)
Query: 47 PPQRLKTTCKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPS 106
P +L + + V +++ +P+ PL IL VS + E +A+VGPS
Sbjct: 444 DPGKL--SGAIEVDRVTFRYRPDG------------PL-ILDDVSLQIEPGEFVAIVGPS 488
Query: 107 GTGKSSLLRIISG 119
G+GKS+LLR++ G
Sbjct: 489 GSGKSTLLRLLLG 501
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 51.1 bits (123), Expect = 1e-06
Identities = 58/260 (22%), Positives = 100/260 (38%), Gaps = 68/260 (26%)
Query: 59 VRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKS----SLL 114
+RNLS A H+ + +K +SF+ E LA+VG SG+GKS S+L
Sbjct: 9 IRNLSVAF-----------HQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSIL 57
Query: 115 RII--------SGRVRDQDFDPRSITVNCHQIKKPAQLRKICG----FVAQE--DNLLPL 160
++ SG + FD + QLR + G + QE +L PL
Sbjct: 58 GLLPSPAAAHPSGSIL---FDGEDLLA-----ASERQLRGVRGNKIGMIFQEPMTSLNPL 109
Query: 161 LTVKETLMFSANFRL-KGMSHKEKEDRVESLMDELGLTHVAG-------SFVGDEENRGI 212
T+ + L + RL +G+S R L++ +G+ G + R +
Sbjct: 110 HTIGKQL--AEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYPHELSGGQRQRVM 167
Query: 213 ------------------SGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYIS 254
+ LD T Q+++LL + ++ H I++ +
Sbjct: 168 IAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLG--IVRKFA 225
Query: 255 -KFLILSRGSVVHYGSLELL 273
+ ++ G +V G+ E L
Sbjct: 226 DRVYVMQHGEIVETGTTETL 245
|
Length = 534 |
| >gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.8 bits (119), Expect = 1e-06
Identities = 59/212 (27%), Positives = 86/212 (40%), Gaps = 44/212 (20%)
Query: 86 ILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPR--SITVNCHQIKK--P 141
ILK +S + I +VGPSG GKS+L+++I+ + DP SI ++ IK
Sbjct: 18 ILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLI-----DPTEGSILIDGVDIKTIDV 72
Query: 142 AQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGL----- 196
LR+ G V Q+ +L TVK+ N M EK VE + +GL
Sbjct: 73 IDLRRKIGMVFQQPHLFE-GTVKD------NIEYGPMLKGEKNVDVEYYLSIVGLNKEYA 125
Query: 197 THVAGSFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTV 238
T + G E R S LD TS + EL+ + TV
Sbjct: 126 TRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTV 185
Query: 239 VLSIH--QPSYRILQYISKFLILSRGSVVHYG 268
+ H + + RI Y L++G +V Y
Sbjct: 186 IWITHNMEQAKRIGDYT---AFLNKGILVEYA 214
|
Length = 241 |
| >gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 49.6 bits (119), Expect = 1e-06
Identities = 51/232 (21%), Positives = 92/232 (39%), Gaps = 60/232 (25%)
Query: 87 LKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVR--------DQDFDPRSITVNCHQI 138
L +SF E+ ++GP+G GK++L+ +I+G+ R D D D + H+I
Sbjct: 21 LNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPE--HRI 78
Query: 139 KKPAQLRKICGFVAQEDNLLPLLTVKETLMFSAN----------FRLKGMSHKEKEDRVE 188
+ RK Q+ + LTV+E L + N RL+ E+ R++
Sbjct: 79 ARAGIGRKF-----QKPTVFENLTVRENLELALNRDKSVFASLFARLRA----EERRRID 129
Query: 189 SLMDELGLTHVAGSFVG-------------------------DEENRGISGLDSTSALQV 223
L+ +GL DE ++G+ +
Sbjct: 130 ELLATIGLGDERDRLAALLSHGQKQWLEIGMLLAQDPKLLLLDEP---VAGMTDAETEKT 186
Query: 224 IELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGSLELLEE 275
ELL S+A ++++ H + + + K +L GSV+ GSL+ ++
Sbjct: 187 AELLKSLAGK--HSILVVEHDMGF-VREIADKVTVLHEGSVLAEGSLDEVQN 235
|
Length = 249 |
| >gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 49.8 bits (119), Expect = 2e-06
Identities = 54/216 (25%), Positives = 94/216 (43%), Gaps = 41/216 (18%)
Query: 85 HILKSVSFEARDSEILAVVGPSGTGKSSL-------LRIISGRVRDQDFDPRSITVNCHQ 137
H LK ++ + E+ A++G +G GKS+L L+ SGR+ FD + I +
Sbjct: 20 HALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRIL---FDGKPID---YS 73
Query: 138 IKKPAQLRKICGFVAQE-DNLLPLLTVKETLMFSA-NFRLKGMSHKEKEDRVESLMDELG 195
K +LR+ G V Q+ DN L +V + + F A N +L E RV++ + G
Sbjct: 74 RKGLMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNLKL---PEDEVRKRVDNALKRTG 130
Query: 196 LTH------------------VAGSFVGDEE----NRGISGLDSTSALQVIELLASMAKA 233
+ H +AG V + + + +GLD ++++LL M K
Sbjct: 131 IEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKE 190
Query: 234 KQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGS 269
T++++ H L Y ++ G V+ G+
Sbjct: 191 LGLTIIIATHDIDIVPL-YCDNVFVMKEGRVILQGN 225
|
Length = 283 |
| >gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 49.2 bits (117), Expect = 2e-06
Identities = 37/130 (28%), Positives = 62/130 (47%), Gaps = 19/130 (14%)
Query: 86 ILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQI------- 138
+LK VS +A ++++++G SG+GKS+ LR I+ + + SI VN I
Sbjct: 20 VLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSE---GSIVVNGQTINLVRDKD 76
Query: 139 -------KKPAQ-LRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESL 190
K + LR V Q NL +TV E +M A ++ G+S +E +R
Sbjct: 77 GQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVM-EAPIQVLGLSKQEARERAVKY 135
Query: 191 MDELGLTHVA 200
+ ++G+ A
Sbjct: 136 LAKVGIDERA 145
|
Length = 257 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 50.1 bits (120), Expect = 2e-06
Identities = 56/218 (25%), Positives = 94/218 (43%), Gaps = 37/218 (16%)
Query: 85 HILKSVSFEARDSEILAVVGPSGTGKSS----LLRIISGRVRDQDFDPRSITVNCHQIKK 140
++K++SF R E L +VG SG+GKS+ LLR+I+ + + FD + + H + +
Sbjct: 300 VVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLINSQ-GEIWFDGQPL----HNLNR 354
Query: 141 PAQL--RKICGFVAQEDN--LLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGL 196
L R V Q+ N L P L V + + +S ++E +V ++M+E+GL
Sbjct: 355 RQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGL 414
Query: 197 THVA-----GSFVGDEENR------------------GISGLDSTSALQVIELLASMAKA 233
F G + R S LD T Q++ LL S+ +
Sbjct: 415 DPETRHRYPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSL-QQ 473
Query: 234 KQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGSLE 271
K + L I + + + ++L +G VV G E
Sbjct: 474 KHQLAYLFISHDLHVVRALCHQVIVLRQGEVVEQGDCE 511
|
Length = 529 |
| >gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 49.8 bits (119), Expect = 3e-06
Identities = 41/191 (21%), Positives = 72/191 (37%), Gaps = 44/191 (23%)
Query: 86 ILKSVSFEARDSEILAVVGPSGTGKSSLLRIISG---------RVRDQDFDPRSITVNCH 136
+L V R+ ++ +VGP+G GK++LLR I+G V D + S
Sbjct: 18 VLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASR 77
Query: 137 QIKKPAQLRKICGFVAQEDNLLPLLTVKETL-MFSANFRLKGMSHKEKEDR-VESLMDEL 194
++ V Q+ +L V++ + M R + + E + VE M+
Sbjct: 78 RVAS----------VPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERT 127
Query: 195 GLTHVAG----SFVGDEENRGI------------------SGLDSTSALQVIELLASMAK 232
G+ A S G E R + + LD ++ +EL+ +
Sbjct: 128 GVAQFADRPVTSLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVD 187
Query: 233 AKQRTVVLSIH 243
+T V +IH
Sbjct: 188 -DGKTAVAAIH 197
|
Length = 402 |
| >gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.8 bits (116), Expect = 3e-06
Identities = 58/221 (26%), Positives = 93/221 (42%), Gaps = 49/221 (22%)
Query: 86 ILKSVSFEARDSEILAVVGPSGTGKSSLLRIIS--------GRVRDQDF-DPRSITVNCH 136
+L V+ E D+ I A++GPSG+GKS+LLR+ + RV + + D + I
Sbjct: 18 VLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDI----- 72
Query: 137 QIKKP-AQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVE------S 189
K +LR+ V Q N +P L++ E + S KE ++RV
Sbjct: 73 -FKMDVIELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQ 131
Query: 190 LMDELG--LTHVAGSFVGDEENR------------------GISGLDSTSALQVIELLAS 229
L DE+ L AG G ++ R + LD + ++ L
Sbjct: 132 LWDEVKDRLDAPAGKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLE 191
Query: 230 MAKAKQRTVVLSIHQP--SYRILQYISKFLILSRGSVVHYG 268
+ K T+VL H P + RI Y++ L +G +V +G
Sbjct: 192 L--KKDMTIVLVTHFPQQAARISDYVA---FLYKGQIVEWG 227
|
Length = 250 |
| >gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 48.4 bits (116), Expect = 3e-06
Identities = 27/118 (22%), Positives = 46/118 (38%), Gaps = 18/118 (15%)
Query: 85 HILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQD----FDPRSITVNCHQIKK 140
+LK ++F + E +A+VGP+G GK++L+ ++ Q D I I +
Sbjct: 17 PVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDI----RDISR 72
Query: 141 PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTH 198
LR + G V Q+ L T+ E + ++ V E G
Sbjct: 73 -KSLRSMIGVVLQDTFLFS-GTIMENIRLGRP--------NATDEEVIEAAKEAGAHD 120
|
Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229 |
| >gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 48.3 bits (115), Expect = 3e-06
Identities = 36/130 (27%), Positives = 60/130 (46%), Gaps = 7/130 (5%)
Query: 73 LSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISG----RVRDQDFDP 128
L E V +L +VSF + E++A+VG SG+GKS+LL ++ G D F+
Sbjct: 11 LCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNG 70
Query: 129 RSITVNCHQIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVE 188
+ ++ K + +K+ GF+ Q +LLP T E + + E R
Sbjct: 71 QPMSKLSSAAKAELRNQKL-GFIYQFHHLLPDFTALENVAMP--LLIGKKKPAEINSRAL 127
Query: 189 SLMDELGLTH 198
++ +GL H
Sbjct: 128 EMLAAVGLEH 137
|
Length = 233 |
| >gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.5 bits (115), Expect = 3e-06
Identities = 57/217 (26%), Positives = 99/217 (45%), Gaps = 44/217 (20%)
Query: 87 LKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPR---SITVNCHQIKKP-- 141
LK+VS + + + A++GPSG GKS+ +R ++ R+ D + R +++ I +P
Sbjct: 28 LKNVSMQIPKNSVTALIGPSGCGKSTFIRCLN-RMNDLIKNCRIEGKVSIEGEDIYEPDV 86
Query: 142 --AQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVE------SLMDE 193
+LRK G V Q+ N P +++ + + + R+ G + K+ + VE +L DE
Sbjct: 87 DVVELRKNVGMVFQKPNPFP-MSIYDNVAYGP--RIHGANKKDLDGVVENALRSAALWDE 143
Query: 194 LG--LTHVAGSFVGDEENR------------------GISGLDSTSALQVIELLASMAKA 233
L A S G ++ R S LD S ++ +L+ M
Sbjct: 144 TSDRLKSPALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLI--MNLK 201
Query: 234 KQRTVVLSIH--QPSYRILQYISKFLILSRGSVVHYG 268
K T+V+ H Q + RI Y FL+ G ++ +G
Sbjct: 202 KDYTIVIVTHNMQQAARISDYTGFFLM---GELIEFG 235
|
Length = 258 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 49.5 bits (119), Expect = 3e-06
Identities = 34/121 (28%), Positives = 57/121 (47%), Gaps = 13/121 (10%)
Query: 84 LHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRS--ITVNCH--QIK 139
+ VS + EI A++G +G GKS+L++I+ G + P S I V+ +IK
Sbjct: 17 VVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQ-----PDSGEIRVDGKEVRIK 71
Query: 140 KPAQLRK--ICGFVAQEDNLLPLLTVKETLMFS-ANFRLKGMSHKEKEDRVESLMDELGL 196
P + I G V Q L+P LTV E ++ + + ++ R++ L + GL
Sbjct: 72 SPRDAIRLGI-GMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGL 130
Query: 197 T 197
Sbjct: 131 P 131
|
Length = 501 |
| >gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.4 bits (115), Expect = 4e-06
Identities = 55/219 (25%), Positives = 94/219 (42%), Gaps = 45/219 (20%)
Query: 86 ILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPR---SITVNCHQIKKP- 141
+K+V+ + ++I A++GPSG GK++LLR I+ R+ D R I I P
Sbjct: 18 AVKNVTMKIFKNQITAIIGPSGCGKTTLLRSIN-RMNDHIPGFRVEGKIYFKGQDIYDPQ 76
Query: 142 ---AQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRV-------ESLM 191
+ RK G V Q+ P +++ + + F R+ G+ K K DR+ +L
Sbjct: 77 LDVTEYRKKVGMVFQKPTPFP-MSIYDNVAFG--PRIHGVKSKHKLDRIVEESLKKAALW 133
Query: 192 DELG--LTHVAGSFVGDEENR------------------GISGLDSTSALQVIELLASMA 231
DE+ L G ++ R S LD + ++ +LL +
Sbjct: 134 DEVKSELNKPGTRLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEEL- 192
Query: 232 KAKQRTVVLSIHQPS--YRILQYISKFLILSRGSVVHYG 268
++ T+V+ H RI YI+ + RG ++ YG
Sbjct: 193 -SENYTIVIVTHNIGQAIRIADYIA---FMYRGELIEYG 227
|
Length = 250 |
| >gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 48.2 bits (115), Expect = 4e-06
Identities = 31/92 (33%), Positives = 46/92 (50%), Gaps = 16/92 (17%)
Query: 86 ILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKKPAQLR 145
+L VS E + +IL ++GP+G GKS+L+R++ G V P IK+ +LR
Sbjct: 19 VLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVA-----PDEGV-----IKRNGKLR 68
Query: 146 KICGFVAQE---DNLLPLLTVKETLMFSANFR 174
G+V Q+ D LP LTV L +
Sbjct: 69 --IGYVPQKLYLDTTLP-LTVNRFLRLRPGTK 97
|
Length = 251 |
| >gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 48.5 bits (116), Expect = 4e-06
Identities = 49/186 (26%), Positives = 86/186 (46%), Gaps = 41/186 (22%)
Query: 87 LKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKKPA---Q 143
LK VSF + E +A+VG +G+GKS+L ++++G + + +ITV +
Sbjct: 23 LKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLL---PEAGTITVG-GMVLSEETVWD 78
Query: 144 LRKICGFVAQE-DNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAGS 202
+R+ G V Q DN TV++ + F G+ +E +RV+ + ++G+
Sbjct: 79 VRRQVGMVFQNPDNQFVGATVQDDVAFGLENI--GVPREEMVERVDQALRQVGME----D 132
Query: 203 FVGDEENR---------GISG----------LD-STSAL------QVIELLASMAKAKQR 236
F+ E +R I+G LD +TS L +V+E + + K ++
Sbjct: 133 FLNREPHRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQL-KEQKG 191
Query: 237 TVVLSI 242
VLSI
Sbjct: 192 ITVLSI 197
|
Length = 279 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 49.6 bits (118), Expect = 5e-06
Identities = 49/174 (28%), Positives = 82/174 (47%), Gaps = 34/174 (19%)
Query: 96 DSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKKPAQL---RKICGFVA 152
+++I A +G +G GK++ L I++G + P S TV L R+ G
Sbjct: 955 ENQITAFLGHNGAGKTTTLSILTGLL-----PPTSGTVLVGGKDIETNLDAVRQSLGMCP 1009
Query: 153 QEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTH-------------- 198
Q + L LTV E ++F A +LKG S +E + +E+++++ GL H
Sbjct: 1010 QHNILFHHLTVAEHILFYA--QLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQ 1067
Query: 199 ----VAGSFVGDEE----NRGISGLDSTSALQVIELLASMAKAKQRTVVLSIHQ 244
VA +FVGD + + SG+D S + +LL + RT+++S H
Sbjct: 1068 RKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLL--LKYRSGRTIIMSTHH 1119
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.4 bits (118), Expect = 5e-06
Identities = 35/134 (26%), Positives = 59/134 (44%), Gaps = 15/134 (11%)
Query: 83 PLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKKPA 142
P+H LKSV+ EI A++G +G GKS+L++++SG +P T+ + I
Sbjct: 17 PVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGI-----HEPTKGTITINNINYNK 71
Query: 143 QLRKIC-----GFVAQEDNLLPLLTVKETLMFSANFRLKGM-----SHKEKEDRVESLMD 192
K+ G + QE +++ LTV E L + K +E R ++
Sbjct: 72 LDHKLAAQLGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLL 131
Query: 193 ELGLTHVAGSFVGD 206
+GL V +
Sbjct: 132 RVGLKVDLDEKVAN 145
|
Length = 510 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 5e-06
Identities = 30/124 (24%), Positives = 56/124 (45%), Gaps = 14/124 (11%)
Query: 86 ILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKKPAQLR 145
+L++VS E + +VG +G GKS+LL+I++G + D +T K ++
Sbjct: 18 LLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEP---DSGEVT-----RPKGLRV- 68
Query: 146 KICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAGSFVG 205
G+++QE L P TV + ++ L+ + E E+ L D +
Sbjct: 69 ---GYLSQEPPLDPEKTVLDYVI-EGFGELRELL-AELEEAYALLADPDDELLAELEALL 123
Query: 206 DEEN 209
+E +
Sbjct: 124 EELD 127
|
Length = 530 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 5e-06
Identities = 32/112 (28%), Positives = 55/112 (49%), Gaps = 20/112 (17%)
Query: 85 HILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKKPAQL 144
ILK +S + V+G +G GKS+LLRI++G D++F+ + +PA
Sbjct: 19 EILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAG--VDKEFNGEA---------RPAPG 67
Query: 145 RKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSH-KEKEDRVESLMDELG 195
K+ G++ QE L P TV+E + +G++ K+ DR + +
Sbjct: 68 IKV-GYLPQEPQLDPTKTVRENVE-------EGVAEIKDALDRFNEISAKFA 111
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Score = 48.0 bits (115), Expect = 5e-06
Identities = 59/242 (24%), Positives = 100/242 (41%), Gaps = 57/242 (23%)
Query: 85 HILKSVSFEARDSEILAVVGPSGTGKSSLLRIISG-----------RVRDQDFDPRSITV 133
ILK V+ + EI A++GP+G+GKS+L + I+G + QD +
Sbjct: 14 EILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQD-------L 66
Query: 134 NCHQIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMS---------HKEKE 184
+ + A+ F E+ +P ++ E L + N R K +
Sbjct: 67 LELEPDERARAGLFLAFQYPEE--IPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLK 124
Query: 185 DRVESL-MDELGLT-HVAGSFVGDEENRG-I-----------------SGLDSTSALQVI 224
++ L MDE L V F G E+ R I SGLD AL+++
Sbjct: 125 AKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQMALLEPKLAILDEIDSGLD-IDALKIV 183
Query: 225 -ELLASMAKAKQRTVVLSIHQPSYRILQYIS--KFLILSRGSVVHYGSLELLEETINNLG 281
E + + + + ++++ +Q R+L YI +L G +V G +EL +E + G
Sbjct: 184 AEGINRLREPDRSFLIITHYQ---RLLNYIKPDYVHVLLDGRIVKSGDVELAKE-LEEKG 239
Query: 282 YQ 283
Y
Sbjct: 240 YD 241
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243 |
| >gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Score = 47.1 bits (113), Expect = 5e-06
Identities = 59/208 (28%), Positives = 96/208 (46%), Gaps = 33/208 (15%)
Query: 86 ILKSVSFEARDSEILAVVGPSGTGKSSLLRIISG----RVRDQD--FDPRSITVNCHQIK 139
ILK V+ + E+ A++GP+G+GKS+L + I G V + + F IT
Sbjct: 15 ILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDIT------D 68
Query: 140 KPAQLRKICG-FVA-QEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESL-MDELGL 196
P + R G F+A Q +P + + L + N +G S EK+ R E L + L
Sbjct: 69 LPPEERARLGIFLAFQYPPEIPGVKNADFLRY-VN---EGFSGGEKK-RNEILQLLLLEP 123
Query: 197 THVAGSFVGDEENRGISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYIS-- 254
+ DE + SGLD + V E++ + + + ++++ +Q R+L YI
Sbjct: 124 DLA----ILDEPD---SGLDIDALRLVAEVINKLREEGKSVLIITHYQ---RLLDYIKPD 173
Query: 255 KFLILSRGSVVHYGSLELLEETINNLGY 282
+ +L G +V G EL E I GY
Sbjct: 174 RVHVLYDGRIVKSGDKELALE-IEKKGY 200
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200 |
| >gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Score = 49.0 bits (117), Expect = 6e-06
Identities = 40/124 (32%), Positives = 65/124 (52%), Gaps = 19/124 (15%)
Query: 83 PLHILKSVSFEARDSEILAVVGPSGTGKSSLLRII-------SG--RVRDQDFDPRSITV 133
+ +LK +S + E++A+VG SG+GKS+L+ I+ SG RV QD T+
Sbjct: 20 QVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVA----TL 75
Query: 134 NCHQIKKPAQLRK-ICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMD 192
+ + AQLR+ GF+ Q +LL LT + + A + G+ K++ R + L+
Sbjct: 76 DADAL---AQLRREHFGFIFQRYHLLSHLTAAQNVEVPAVY--AGLERKQRLLRAQELLQ 130
Query: 193 ELGL 196
LGL
Sbjct: 131 RLGL 134
|
Length = 648 |
| >gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Score = 47.9 bits (114), Expect = 8e-06
Identities = 37/123 (30%), Positives = 60/123 (48%), Gaps = 8/123 (6%)
Query: 86 ILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKKPA-QL 144
++ +SF + E ++GP+G GK++ LR++ G D SI++ + A
Sbjct: 22 VVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHP---DAGSISLCGEPVPSRARHA 78
Query: 145 RKICGFVAQEDNLLPLLTVKETLM-FSANFRLKGMSHKEKEDRVESLMDELGLTHVAGSF 203
R+ G V Q DNL P TV+E L+ F F G+S V L++ L + A +
Sbjct: 79 RQRVGVVPQFDNLDPDFTVRENLLVFGRYF---GLSAAAARALVPPLLEFAKLENKADAK 135
Query: 204 VGD 206
VG+
Sbjct: 136 VGE 138
|
Length = 306 |
| >gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Score = 47.2 bits (113), Expect = 8e-06
Identities = 16/38 (42%), Positives = 24/38 (63%)
Query: 83 PLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGR 120
P + VSF+ E+L +VG SG+GK++LL +S R
Sbjct: 18 PRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSAR 55
|
Length = 258 |
| >gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 47.3 bits (113), Expect = 8e-06
Identities = 50/219 (22%), Positives = 86/219 (39%), Gaps = 45/219 (20%)
Query: 86 ILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRS--ITVNCHQIKK--- 140
IL +S++ E A+VGP+G GK++LL +++G + P S +T+ + K
Sbjct: 46 ILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTG-----EHPPSSGDVTLLGRRFGKGET 100
Query: 141 PAQLRKICGFV--AQEDNLLPLLTVKETLM---FSANFRLKGMSHKEKEDRVESLMDELG 195
+LRK G V + TV++ ++ F++ + E + L++ LG
Sbjct: 101 IFELRKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLG 160
Query: 196 LTHVAGSFVG-------------------------DEENRGISGLDSTSALQVIELLASM 230
H+A G DE GLD + Q++ L +
Sbjct: 161 AKHLADRPFGSLSQGEQRRVLIARALVKDPELLILDE---PAQGLDLIAREQLLNRLEEL 217
Query: 231 AKAKQRTVVLSI-HQPSYRILQYISKFLILSRGSVVHYG 268
A + +L + H I + L+L G VV G
Sbjct: 218 AASPGAPALLFVTHHAE-EIPPCFTHRLLLKEGEVVAQG 255
|
Length = 257 |
| >gnl|CDD|214372 CHL00131, ycf16, sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 1e-05
Identities = 57/235 (24%), Positives = 100/235 (42%), Gaps = 47/235 (20%)
Query: 86 ILKSVSFEARDSEILAVVGPSGTGKSSLLRIISG----RVRDQD--FDPRSITVNCHQIK 139
ILK ++ EI A++GP+G+GKS+L ++I+G ++ + D F SI
Sbjct: 22 ILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESIL------D 75
Query: 140 KPAQLRKICG-FVA-QEDNLLPLLTVKETLMFSANFRLKGMSHKEKE--DRVESLMDELG 195
+ R G F+A Q +P ++ + L + N + K E + + +E + ++L
Sbjct: 76 LEPEERAHLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLK 135
Query: 196 LTHVAGSFVGDEENRGISG--------------------LDST------SALQVIELLAS 229
L + SF+ N G SG LD T AL++I +
Sbjct: 136 LVGMDPSFLSRNVNEGFSGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGIN 195
Query: 230 MAKAKQRTVVLSIHQPSYRILQYI--SKFLILSRGSVVHYGSLELLEETINNLGY 282
+ +++L H R+L YI ++ G ++ G EL +E + GY
Sbjct: 196 KLMTSENSIILITHYQ--RLLDYIKPDYVHVMQNGKIIKTGDAELAKE-LEKKGY 247
|
Length = 252 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 48.0 bits (115), Expect = 1e-05
Identities = 47/224 (20%), Positives = 89/224 (39%), Gaps = 50/224 (22%)
Query: 87 LKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIK--KPAQL 144
L ++ + ++ A+VG SG GKS+LL ++ G + I VN ++ P
Sbjct: 337 LSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQ---GEIRVNGIDLRDLSPEAW 393
Query: 145 RKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAGSFV 204
RK +V+Q + L T++E ++ + ++ + + +D+ GL
Sbjct: 394 RKQISWVSQ-NPYLFAGTIRENILLAR--------PDASDEEIIAALDQAGLLEFVPKPD 444
Query: 205 G-----DEENRGISG---------------------------LDSTSALQVIELLASMAK 232
G E G+SG LD+ + +++ L +
Sbjct: 445 GLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQEL-- 502
Query: 233 AKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGSLELLEET 276
AKQ+TV++ H+ + ++L G +V G+ E L E
Sbjct: 503 AKQKTVLVITHRL-EDAADA-DRIVVLDNGRLVEQGTHEELSEK 544
|
Length = 559 |
| >gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 47.2 bits (113), Expect = 1e-05
Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 14/75 (18%)
Query: 80 PKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRII-------SGRVRDQDFDPRSIT 132
K + + VSF ++ E L +VG SG GKS+L R+I SG + F+ + IT
Sbjct: 22 KKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEIL---FEGKDIT 78
Query: 133 VNCHQIKKPAQLRKI 147
++ K + ++
Sbjct: 79 ----KLSKEERRERV 89
|
Length = 268 |
| >gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.3 bits (112), Expect = 1e-05
Identities = 50/212 (23%), Positives = 93/212 (43%), Gaps = 34/212 (16%)
Query: 86 ILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKKPAQ-- 143
+ ++++ E D A++GP+G GKS+LLR +S + + ++ I+ A
Sbjct: 22 VAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAH---GHVWLDGEHIQHYASKE 78
Query: 144 -LRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMS---HKEKEDRVESLMDELGLTHV 199
R+I G +AQ +TV+E L+ + + + KE E+ V M G+TH+
Sbjct: 79 VARRI-GLLAQNATTPGDITVQE-LVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHL 136
Query: 200 AGSFV----GDEENRG------------------ISGLDSTSALQVIELLASMAKAKQRT 237
A V G + R + LD + + ++ELL+ + + K T
Sbjct: 137 ADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYT 196
Query: 238 VVLSIHQPSYRILQYISKFLILSRGSVVHYGS 269
+ +H + + +Y S + L G +V G+
Sbjct: 197 LAAVLHDLN-QACRYASHLIALREGKIVAQGA 227
|
Length = 265 |
| >gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 48.1 bits (115), Expect = 1e-05
Identities = 28/81 (34%), Positives = 44/81 (54%), Gaps = 7/81 (8%)
Query: 75 HLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVN 134
++P+ P IL +SF + +A+VG SG GKS++LR++ R D + SIT++
Sbjct: 269 SFAYDPRRP--ILNGISFTIPLGKTVAIVGESGAGKSTILRLL---FRFYDVNSGSITID 323
Query: 135 CHQIKKPAQ--LRKICGFVAQ 153
I+ Q LR+ G V Q
Sbjct: 324 GQDIRDVTQQSLRRAIGIVPQ 344
|
Length = 497 |
| >gnl|CDD|236947 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.5 bits (114), Expect = 1e-05
Identities = 15/34 (44%), Positives = 25/34 (73%)
Query: 86 ILKSVSFEARDSEILAVVGPSGTGKSSLLRIISG 119
++K + + D E + +VGPSG GKS+LLR+++G
Sbjct: 19 VIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAG 52
|
Length = 356 |
| >gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.9 bits (111), Expect = 1e-05
Identities = 58/225 (25%), Positives = 100/225 (44%), Gaps = 49/225 (21%)
Query: 85 HILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPR-----SITVNCHQIK 139
HILK+V+ + + + A++GPSG GKS+ +R ++ R D P I ++ I
Sbjct: 17 HILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLN---RMNDLIPGFRHEGHIYLDGVDIY 73
Query: 140 KPA----QLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEK-EDRVE------ 188
PA +LRK G V Q+ N P ++ + + + R+ G ++ E+RVE
Sbjct: 74 DPAVDVVELRKKVGMVFQKPNPFP-KSIFDNVAYG--LRIHGEDDEDFIEERVEESLKAA 130
Query: 189 SLMDEL--GLTHVAGSFVGDEENR------------------GISGLDSTSALQVIELLA 228
+L DE+ L A G ++ R S LD S ++ +L+
Sbjct: 131 ALWDEVKDKLDKSALGLSGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIH 190
Query: 229 SMAKAKQRTVVLSIH--QPSYRILQYISKFLILSRGSVVHYGSLE 271
+ + T+V+ H Q + R+ +Y S FL G ++ G +
Sbjct: 191 KL--KEDYTIVIVTHNMQQATRVSKYTSFFL---NGEIIESGLTD 230
|
Length = 250 |
| >gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.2 bits (113), Expect = 1e-05
Identities = 33/111 (29%), Positives = 48/111 (43%), Gaps = 23/111 (20%)
Query: 97 SEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCH-------QIKKPAQLRKICG 149
I A+ G SG GK+SL+ ISG R Q I +N I P + R+I G
Sbjct: 24 QGITAIFGRSGAGKTSLINAISGLTRPQK---GRIVLNGRVLFDAEKGICLPPEKRRI-G 79
Query: 150 FVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKE--DRVESLMDELGLTH 198
+V Q+ L P V+ L + GM+ D++ +L LG+
Sbjct: 80 YVFQDARLFPHYKVRGNLRY-------GMAKSMVAQFDKIVAL---LGIEP 120
|
Length = 352 |
| >gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Score = 47.2 bits (112), Expect = 1e-05
Identities = 29/125 (23%), Positives = 56/125 (44%), Gaps = 15/125 (12%)
Query: 87 LKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRS--ITVNCHQIKK--PA 142
+ EI ++G SG+GKS+ +R+++ + +P + I ++ I K P
Sbjct: 9 VNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLI-----EPTAGQIFIDGENIMKQSPV 63
Query: 143 QL----RKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTH 198
+L RK G V Q+ L P +T+ + L G +E++++ L+ +GL
Sbjct: 64 ELREVRRKKIGMVFQQFALFPHMTILQNTSLG--PELLGWPEQERKEKALELLKLVGLEE 121
Query: 199 VAGSF 203
+
Sbjct: 122 YEHRY 126
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363 |
| >gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.6 bits (110), Expect = 2e-05
Identities = 58/220 (26%), Positives = 91/220 (41%), Gaps = 45/220 (20%)
Query: 84 LHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPR---SITVNCHQIKK 140
H LK +S E + ++A +GPSG GKS+ LR+ + R+ D R I ++ I
Sbjct: 16 FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFN-RMNDLIPATRLEGEIRIDGRNIYD 74
Query: 141 PA----QLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEK-EDRVE------S 189
+LRK G V Q N P ++ E + + R+ G+ RVE +
Sbjct: 75 KGVQVDELRKNVGMVFQRPNPFP-KSIFENVAYG--LRVNGVKDNAFIRQRVEETLKGAA 131
Query: 190 LMDEL--GLTHVAGSFVGDEENR------------------GISGLDSTSALQVIELLAS 229
L DE+ L A + G ++ R S LD S +V EL+
Sbjct: 132 LWDEVKDKLKESAFALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHE 191
Query: 230 MAKAKQRTVVLSIH--QPSYRILQYISKFLILSRGSVVHY 267
+ K T+V+ H Q + R+ + F + G +V Y
Sbjct: 192 L--KKDYTIVIVTHNMQQAARVSDKTAFFYM---GEMVEY 226
|
Length = 250 |
| >gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.4 bits (110), Expect = 2e-05
Identities = 56/230 (24%), Positives = 94/230 (40%), Gaps = 56/230 (24%)
Query: 85 HILKSVSFEARDSEILAVVGPSGTGKSSLLRI------------ISGRVRDQDFDPRSIT 132
LKS++ ++ A++GPSG GKS+LLR I+G++ D I
Sbjct: 17 QALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLT---MDGEDIY 73
Query: 133 VNCHQIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHK-------EKED 185
N A LR G V Q+ N P +++ E + + R +G+ K E+
Sbjct: 74 GNI----DVADLRIKVGMVFQKPNPFP-MSIYENVAYG--LRAQGIKDKKVLDEVVERSL 126
Query: 186 RVESLMDELG--LTHVAGSFVGDEENR------------------GISGLDSTSALQVIE 225
R +L DE+ L A G ++ R S LD + ++ E
Sbjct: 127 RGAALWDEVKDRLKSHAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEE 186
Query: 226 LLASMAKAKQRTVVLSIH--QPSYRILQYISKFLILSRGSVVHYGSLELL 273
L+ + K T+V+ H Q + RI + FL+ G +V + +++
Sbjct: 187 LMEEL--KKNYTIVIVTHSMQQARRISDRTAFFLM---GELVEHDDTQVI 231
|
Length = 249 |
| >gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.5 bits (110), Expect = 2e-05
Identities = 59/220 (26%), Positives = 95/220 (43%), Gaps = 51/220 (23%)
Query: 87 LKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPR-----SITVNCHQIKKP 141
LK + + +EI A++GPSG GKS+ LR ++ R D P ++++ I P
Sbjct: 21 LKGIDLDFNQNEITALIGPSGCGKSTYLRTLN---RMNDLIPGVTITGNVSLRGQNIYAP 77
Query: 142 ----AQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDR-VESLMDELG- 195
QLRK G V Q+ N P ++ E +++ RL G+ K D VE+ + +
Sbjct: 78 NEDVVQLRKQVGMVFQQPNPFP-FSIYENVIYG--LRLAGVKDKAVLDEAVETSLKQAAI 134
Query: 196 -------LTHVAGSFVGDEENR------------------GISGLDSTSALQVIELLASM 230
L A S G ++ R S LD S+ Q+ +L +
Sbjct: 135 WDEVKDHLHESALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLEL 194
Query: 231 AKAKQRTVVL---SIHQPSYRILQYISKFLILSRGSVVHY 267
Q T++L S+HQ S RI + FL G+++ +
Sbjct: 195 --RDQYTIILVTHSMHQAS-RISDKTAFFL---TGNLIEF 228
|
Length = 252 |
| >gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein | Back alignment and domain information |
|---|
Score = 45.6 bits (108), Expect = 2e-05
Identities = 35/182 (19%), Positives = 64/182 (35%), Gaps = 33/182 (18%)
Query: 86 ILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKKPAQLR 145
+ +SF E L V GP+G+GK++LLRI++G + +
Sbjct: 15 LFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQR--DSIA 72
Query: 146 KICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLT---HVAGS 202
+ ++ + L+V E L F +++VE + +GL +
Sbjct: 73 RGLLYLGHAPGIKTTLSVLENLRFWHAD--------HSDEQVEEALARVGLNGFEDRPVA 124
Query: 203 FVGDEENRGI-------------------SGLDSTSALQVIELLASMAKAKQRTVVLSIH 243
+ + R + + LD + E +A A+ VVL+ H
Sbjct: 125 QLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHC-ARGGMVVLTTH 183
Query: 244 QP 245
Q
Sbjct: 184 QD 185
|
CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201 |
| >gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 44.7 bits (107), Expect = 2e-05
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 9/55 (16%)
Query: 85 HILKSVSFEARDSEILAVVGPSGTGKSSLLRIISG---------RVRDQDFDPRS 130
L VS R E+ A++G +G GKS+L++I+SG V ++ S
Sbjct: 14 KALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFAS 68
|
This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163 |
| >gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.7 bits (109), Expect = 2e-05
Identities = 33/118 (27%), Positives = 60/118 (50%), Gaps = 15/118 (12%)
Query: 85 HILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDF---DPRSITVNC--HQIK 139
H+ E +A++GPSG GKS+LL +I+G F S+T+N H
Sbjct: 13 HLPMRFDLTVERGERVAILGPSGAGKSTLLNLIAG------FLTPASGSLTLNGQDHTTT 66
Query: 140 KPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLT 197
P++ R + + QE+NL LTV + + N LK ++ ++E ++ ++ ++G+
Sbjct: 67 PPSR-RPV-SMLFQENNLFSHLTVAQNIGLGLNPGLK-LNAAQRE-KLHAIARQMGIE 120
|
Length = 232 |
| >gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 46.2 bits (110), Expect = 3e-05
Identities = 35/127 (27%), Positives = 62/127 (48%), Gaps = 19/127 (14%)
Query: 86 ILKSVSFEARDSEILAVVGPSGTGKSSLLRII-------SGRVRDQDFDPRSITVNCHQI 138
+L +S + +++A++GPSG+GK++LLRII SG +R D +
Sbjct: 17 VLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLH------ 70
Query: 139 KKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANF--RLKGMSHKEKEDRVESLMDELGL 196
A+ RK+ GFV Q L +TV + + F R + + + +V L++ + L
Sbjct: 71 ---ARDRKV-GFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQL 126
Query: 197 THVAGSF 203
H+A +
Sbjct: 127 AHLADRY 133
|
Length = 353 |
| >gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 46.0 bits (109), Expect = 4e-05
Identities = 53/266 (19%), Positives = 106/266 (39%), Gaps = 61/266 (22%)
Query: 47 PPQRLKTTCKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPS 106
P L + V+NL +E L ++S+ ++I ++G S
Sbjct: 12 VPNPLSDDIILRVKNLYCVFDEKQE------NELVA----LNNISYTFEKNKIYFIIGNS 61
Query: 107 GTGKSSLLRIISG---------RVRD------QDFDPRSITVNCHQIKKPAQLRKICGFV 151
G+GKS+L+ +G +V D ++ +IK +LR+ V
Sbjct: 62 GSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHELITNPYSKKIKNFKELRRRVSMV 121
Query: 152 AQ--EDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAGSFV----- 204
Q E L T+++ +MF L G+ E + + ++++GL S++
Sbjct: 122 FQFPEYQLFK-DTIEKDIMFGP-VAL-GVKKSEAKKLAKFYLNKMGLDD---SYLERSPF 175
Query: 205 ---GDEENR----GI--------------SGLDSTSALQVIELLASMAKAKQRTVVLSIH 243
G ++ R GI +GLD ++++L+ AKA +TV + H
Sbjct: 176 GLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILD-AKANNKTVFVITH 234
Query: 244 QPSYRILQYISKFLILSRGSVVHYGS 269
+L+ + +++ +G ++ G+
Sbjct: 235 TME-HVLEVADEVIVMDKGKILKTGT 259
|
Length = 320 |
| >gnl|CDD|223912 COG0842, COG0842, ABC-type multidrug transport system, permease component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 45.7 bits (108), Expect = 4e-05
Identities = 34/204 (16%), Positives = 81/204 (39%), Gaps = 9/204 (4%)
Query: 354 WKIIYRTKQLFLARTMQALVGGFGLGSVYVRVRKDEAGVAERLGLFAFSLSFLLSSTVEA 413
++++ L +A + ++ G G + L AF + ++ +V
Sbjct: 42 FQVLVDASALIIAPILYLIIFGLLFGLREGLSGRLYHWSNPSLDYLAFIVPGVILMSVLF 101
Query: 414 LPIYLQERRVLMKEASREAYRI-------SSYLIANTIVFLPFLFVVSLLFAIPVYWIVG 466
I+ + + R+ L+ + +L +++ L + + +++G
Sbjct: 102 SGIFSFSSALFREREFGTLERLLVSPVSRLFILLGKIVPYLVVASLIAGLVLLVIAFLLG 161
Query: 467 LNPSIEAFVFFIFVVWLIVLMASSLVLFLSAISPDFISGNSLICTVLGA-FFLFSGYFIP 525
P + + + + ++ L++L +L L LS + + S + +L SG F P
Sbjct: 162 -VPFLGSLLLLLLLLLLLLLATVALGLLLSTFAKSQLQCASAVGNLLILPLGFLSGVFFP 220
Query: 526 KEYIPKYWIFMYYISLYRYPLDSL 549
E +P + + YI+ Y +D+L
Sbjct: 221 LELLPAWLQGISYINPLTYAIDAL 244
|
Length = 286 |
| >gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C | Back alignment and domain information |
|---|
Score = 45.2 bits (107), Expect = 4e-05
Identities = 25/77 (32%), Positives = 42/77 (54%), Gaps = 9/77 (11%)
Query: 86 ILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRS--ITVNCHQIK--KP 141
IL ++S + E++ +VG SG+GKS+L ++I + P + + V+ H + P
Sbjct: 17 ILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRF-----YVPENGRVLVDGHDLALADP 71
Query: 142 AQLRKICGFVAQEDNLL 158
A LR+ G V QE+ L
Sbjct: 72 AWLRRQVGVVLQENVLF 88
|
The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 45.9 bits (109), Expect = 4e-05
Identities = 54/245 (22%), Positives = 94/245 (38%), Gaps = 64/245 (26%)
Query: 84 LHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITV--------NC 135
+LK++SF + E+L ++G SG GKS L+ ++ G ++P S + C
Sbjct: 13 KEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGM---DQYEPTSGRIIYHVALCEKC 69
Query: 136 HQIKKPAQLR---KICG---------FVAQEDNLLPLLTVKETLMFSANFRL-------- 175
+++P+++ +CG F D L + + +M F L
Sbjct: 70 GYVERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLD 129
Query: 176 --------KGMSHKEKEDRVESLMDELGL----THVAGSFVGDEENRGI----------- 212
G KE R L++ + L TH+A G E+ R +
Sbjct: 130 NVLEALEEIGYEGKEAVGRAVDLIEMVQLSHRITHIARDLSGGEKQRVVLARQLAKEPFL 189
Query: 213 -------SGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYIS-KFLILSRGSV 264
LD +A V L KA ++VL+ H P +++ +S K + L G +
Sbjct: 190 FLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWP--EVIEDLSDKAIWLENGEI 247
Query: 265 VHYGS 269
G+
Sbjct: 248 KEEGT 252
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.1 bits (106), Expect = 5e-05
Identities = 55/218 (25%), Positives = 98/218 (44%), Gaps = 41/218 (18%)
Query: 85 HILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPR---SITVNCHQIKKP 141
+LK+++ + + +I A++GPSG GKS+LLR ++ R+ D R ++ ++ I P
Sbjct: 18 QVLKNINMDFPERQITAIIGPSGCGKSTLLRALN-RMNDIVSGARLEGAVLLDNENIYSP 76
Query: 142 ----AQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHK-------EKEDRVESL 190
LRK G V Q+ N P ++ + + F R+ G + + EK R +L
Sbjct: 77 NLDVVNLRKRVGMVFQQPNPFP-KSIFDNVAFGP--RMLGTTAQSRLDEVVEKSLRQAAL 133
Query: 191 MDELGLT-HVAG-SFVGDEENR------------------GISGLDSTSALQVIELLASM 230
DE+ H +G + G ++ R S LD S +++ EL+ +
Sbjct: 134 WDEVKDNLHKSGLALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQEL 193
Query: 231 AKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYG 268
+ +V Q + R + + FL+ G +V YG
Sbjct: 194 KQNYTIAIVTHNMQQAARASDW-TGFLL--TGDLVEYG 228
|
Length = 251 |
| >gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 5e-05
Identities = 34/144 (23%), Positives = 67/144 (46%), Gaps = 20/144 (13%)
Query: 57 VTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRI 116
+ V+NL++ + + + L VSF + E L+++G +G+GKS+ +R+
Sbjct: 5 IEVKNLTFKYKEDQE------------KYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRL 52
Query: 117 ISGRVRDQDFDPRSITVNCHQ--IKKPAQLRKICGFVAQE-DNLLPLLTVKETLMFSANF 173
I G + + I ++ + +R G V Q DN TV++ + F
Sbjct: 53 IDGLLEAESGQ---IIIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFG--L 107
Query: 174 RLKGMSHKEKEDRVESLMDELGLT 197
KG+ H+E ++RV ++ +G+
Sbjct: 108 ENKGIPHEEMKERVNEALELVGMQ 131
|
Length = 279 |
| >gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 6e-05
Identities = 17/32 (53%), Positives = 25/32 (78%)
Query: 90 VSFEARDSEILAVVGPSGTGKSSLLRIISGRV 121
VSF+ E+L +VG SG+GK++LL+ ISGR+
Sbjct: 25 VSFDLYPGEVLGIVGESGSGKTTLLKCISGRL 56
|
Length = 258 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.7 bits (109), Expect = 6e-05
Identities = 28/85 (32%), Positives = 49/85 (57%), Gaps = 6/85 (7%)
Query: 87 LKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKKPAQLRK 146
L +SF+ R ++ A++G +G GKS+LL+I+SG + D SI ++ +++ +
Sbjct: 20 LDDISFDCRAGQVHALMGENGAGKSTLLKILSG---NYQPDAGSILIDGQEMRFASTTAA 76
Query: 147 ICGFVA---QEDNLLPLLTVKETLM 168
+ VA QE +L+P +TV E L
Sbjct: 77 LAAGVAIIYQELHLVPEMTVAENLY 101
|
Length = 501 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 45.3 bits (108), Expect = 7e-05
Identities = 56/228 (24%), Positives = 92/228 (40%), Gaps = 53/228 (23%)
Query: 83 PLHILKSVSFEARDSEILAVVGPSGTGKSS----LLRII--SGRVRDQDFDPRSITVNCH 136
L + +S R + L +VG SG+GKS+ LLR+I G +R FD + I
Sbjct: 299 HLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQGEIR---FDGQDIDGLSR 355
Query: 137 QIKKPAQLRKICGFVAQEDN--LLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDEL 194
+ +P LR+ V Q+ L P +TV + + +S E++ RV ++E+
Sbjct: 356 KEMRP--LRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEV 413
Query: 195 GLTHVAGS-----FVGDEENR-GI-----------------SGLDSTSALQVIELLASMA 231
GL + F G + R I S LD + QV++LL +
Sbjct: 414 GLDPATRNRYPHEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQ 473
Query: 232 KAKQRTVVLSIHQPSY-------RILQYISKFLILSR-GSVVHYGSLE 271
+ H SY +++ + +I+ R G +V G E
Sbjct: 474 QK---------HGLSYLFISHDLAVVRALCHRVIVMRDGKIVEQGPTE 512
|
Length = 534 |
| >gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 7e-05
Identities = 17/34 (50%), Positives = 25/34 (73%)
Query: 86 ILKSVSFEARDSEILAVVGPSGTGKSSLLRIISG 119
L+ +SF + E LA++GPSG+GKS+L R+I G
Sbjct: 333 TLRGISFSLQAGEALAIIGPSGSGKSTLARLIVG 366
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544 |
| >gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.7 bits (105), Expect = 7e-05
Identities = 55/221 (24%), Positives = 98/221 (44%), Gaps = 47/221 (21%)
Query: 86 ILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQD----FDPRSITVNCHQIKKP 141
ILK ++ + ++ I ++GPSG+GKS+LL++++ + D D + + +
Sbjct: 25 ILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQID 84
Query: 142 A-QLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDR-----VESLMDELG 195
A +LRK G V Q+ N P L++ + + + LK SH KE R VE + ++G
Sbjct: 85 AIKLRKEVGMVFQQPNPFPHLSIYDNIAYP----LK--SHGIKEKREIKKIVEECLRKVG 138
Query: 196 --------LTHVAGSFVGDEENR-----------GISGLDSTSAL------QVIELLASM 230
L A G ++ R + +D +++ Q IE L +
Sbjct: 139 LWKEVYDRLNSPASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITE 198
Query: 231 AKAKQRTVVLSIHQPSY--RILQYISKFLILSRGSVVHYGS 269
K + +V+ H P R+ Y++ L G +V +GS
Sbjct: 199 LK-NEIAIVIVSHNPQQVARVADYVA---FLYNGELVEWGS 235
|
Length = 257 |
| >gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 45.5 bits (109), Expect = 8e-05
Identities = 28/95 (29%), Positives = 46/95 (48%), Gaps = 20/95 (21%)
Query: 102 VVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKKPAQLRKICGFVAQEDNLLPLL 161
V+G +G GKS+LLRI++G D++F+ + PA K+ G++ QE L P
Sbjct: 38 VLGLNGAGKSTLLRIMAG--VDKEFEGEAR---------PAPGIKV-GYLPQEPQLDPEK 85
Query: 162 TVKETLMFSANFRLKGMSH-KEKEDRVESLMDELG 195
TV+E + +G++ K DR +
Sbjct: 86 TVRENVE-------EGVAEVKAALDRFNEIYAAYA 113
|
Length = 556 |
| >gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 44.7 bits (105), Expect = 8e-05
Identities = 49/241 (20%), Positives = 99/241 (41%), Gaps = 43/241 (17%)
Query: 57 VTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRI 116
+ ++Y QPN+ S L + + E + A++G +G+GKS+LL+
Sbjct: 2 IKFEKVNYTYQPNSPFASRALFD----------IDLEVKKGSYTALIGHTGSGKSTLLQH 51
Query: 117 ISGRVRDQDFDPRS---ITVNCHQIKKPAQLRKICGFVAQ--EDNLLPLLTVKETLMFSA 171
++G ++ + + + + K+ +RK G V Q E L +K+
Sbjct: 52 LNGLLQPTEGKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQLFEETVLKDVAFGPQ 111
Query: 172 NFRLKGMSHKEKEDRVESLMDELGLTH-------------------VAGSFVGDEE---- 208
NF G+ ++ E ++ +GL +AG + E
Sbjct: 112 NF---GIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGILAMEPEVLVL 168
Query: 209 NRGISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYG 268
+ +GLD + +++++L S+ ++ Q TVVL H + Y +L +G ++ G
Sbjct: 169 DEPTAGLDPKARIEMMQLFESIHQSGQ-TVVLVTHLMD-DVADYADYVYLLEKGHIISCG 226
Query: 269 S 269
+
Sbjct: 227 T 227
|
Length = 288 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 9e-05
Identities = 27/77 (35%), Positives = 43/77 (55%), Gaps = 9/77 (11%)
Query: 86 ILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRS--ITVNCHQIK--KP 141
+LK +SF E +A+VGPSG+GKS+L++++ +DP S I ++ I+
Sbjct: 344 VLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRL-----YDPTSGEILIDGIDIRDISL 398
Query: 142 AQLRKICGFVAQEDNLL 158
LRK G V+Q+ L
Sbjct: 399 DSLRKRIGIVSQDPLLF 415
|
Length = 567 |
| >gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Score = 44.1 bits (104), Expect = 9e-05
Identities = 41/137 (29%), Positives = 66/137 (48%), Gaps = 15/137 (10%)
Query: 87 LKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKKPAQ--- 143
L+ V+F R E+ + G SG GKS+LL++I G R I + H I +
Sbjct: 18 LQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSA---GKIWFSGHDITRLKNREV 74
Query: 144 --LRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAG 201
LR+ G + Q+ +LL TV + + + + G S + RV + +D++GL A
Sbjct: 75 PFLRRQIGMIFQDHHLLMDRTVYDNV--AIPLIIAGASGDDIRRRVSAALDKVGLLDKAK 132
Query: 202 SF----VGDEENR-GIS 213
+F G E+ R GI+
Sbjct: 133 NFPIQLSGGEQQRVGIA 149
|
Length = 222 |
| >gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 9e-05
Identities = 26/82 (31%), Positives = 38/82 (46%), Gaps = 8/82 (9%)
Query: 85 HILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPR---SITVNCHQIKKP 141
L V + + + A +GPSG GKS+ LR ++ R+ D R IT++ I P
Sbjct: 33 QALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLN-RMNDTIDGCRVTGKITLDGEDIYDP 91
Query: 142 A----QLRKICGFVAQEDNLLP 159
+LR G V Q+ N P
Sbjct: 92 RLDVVELRARVGMVFQKPNPFP 113
|
Length = 267 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 42.4 bits (101), Expect = 9e-05
Identities = 13/35 (37%), Positives = 23/35 (65%)
Query: 86 ILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGR 120
+LK +S + + +VG +G GKS+LL++I+G
Sbjct: 15 LLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGE 49
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 43.3 bits (103), Expect = 1e-04
Identities = 14/29 (48%), Positives = 21/29 (72%)
Query: 91 SFEARDSEILAVVGPSGTGKSSLLRIISG 119
SF E++ + GP+G GK+SLLRI++G
Sbjct: 21 SFTLNAGELVQIEGPNGAGKTSLLRILAG 49
|
Length = 204 |
| >gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 44.5 bits (105), Expect = 1e-04
Identities = 50/231 (21%), Positives = 91/231 (39%), Gaps = 45/231 (19%)
Query: 73 LSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRII-------SGRVRDQD 125
++ + H+ + L +VS +I V+G SG GKS+L+R + SG V
Sbjct: 7 ITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVI--- 63
Query: 126 FDPRSITVNCHQIKKP--AQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEK 183
D + +T + + R+ G + Q NLL TV + L E
Sbjct: 64 VDGQDLT----TLSNSELTKARRQIGMIFQHFNLLSSRTVFGNVALP--LELDNTPKDEI 117
Query: 184 EDRVESLMDELGLTHVAGSF----VGDEENR------------------GISGLDSTSAL 221
+ +V L+ +GL S+ G ++ R S LD +
Sbjct: 118 KRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQ 177
Query: 222 QVIELLASMAKAKQRTVVLSIHQPSY--RILQYISKFLILSRGSVVHYGSL 270
++ELL + + T++L H+ RI ++ ++S G ++ G++
Sbjct: 178 SILELLKEINRRLGLTILLITHEMDVVKRICDCVA---VISNGELIEQGTV 225
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343 |
| >gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 44.6 bits (105), Expect = 1e-04
Identities = 53/222 (23%), Positives = 97/222 (43%), Gaps = 39/222 (17%)
Query: 87 LKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKKPAQLRK 146
+K S + EI ++G SG+GKS+++R+++ + V+ +I A+LR+
Sbjct: 44 VKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISD-AELRE 102
Query: 147 I----CGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAGS 202
+ V Q L+P +TV + F L G++ +E+ ++ + ++GL + A S
Sbjct: 103 VRRKKIAMVFQSFALMPHMTVLDNTAFG--MELAGINAEERREKALDALRQVGLENYAHS 160
Query: 203 FVGDEENRGI-----------------------SGLDSTSALQVIELLASMAKAKQRTVV 239
+ DE + G+ S LD ++ + L + QRT+V
Sbjct: 161 Y-PDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIV 219
Query: 240 LSIH--QPSYRILQYISKFLILSRGSVVHYGSLELLEETINN 279
H + RI I+ I+ G VV G+ +E +NN
Sbjct: 220 FISHDLDEAMRIGDRIA---IMQNGEVVQVGT---PDEILNN 255
|
Length = 400 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 1e-04
Identities = 49/198 (24%), Positives = 74/198 (37%), Gaps = 47/198 (23%)
Query: 87 LKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIK--KPAQL 144
L+ VSF E +A+VGPSG GKS+LL ++ G V D SI VN +
Sbjct: 338 LRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFV---DPTEGSIAVNGVPLADADADSW 394
Query: 145 RKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVE-----SLMDELGLTHV 199
R +V Q L T+ E + + S E + +E + L
Sbjct: 395 RDQIAWVPQHPFLFA-GTIAENIRLAR----PDASDAEIREALERAGLDEFVAALPQGL- 448
Query: 200 AGSFVGDEENRGISG---------------------------LDSTSALQVIELLASMAK 232
E G+SG LD+ + +V+E L ++A+
Sbjct: 449 --DTPIGEGGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEAEVLEALRALAQ 506
Query: 233 AKQRTVVLSIHQPSYRIL 250
RTV+L H+ + L
Sbjct: 507 G--RTVLLVTHRLALAAL 522
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.7 bits (103), Expect = 1e-04
Identities = 56/232 (24%), Positives = 97/232 (41%), Gaps = 53/232 (22%)
Query: 77 LHEPKVPLHI--LKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFD----PRS 130
++ P P+ L ++SFE + +A+VG +G+GKS+L+ Q F+ P S
Sbjct: 11 IYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLM---------QHFNALLKPSS 61
Query: 131 --ITVNCHQI------KKPAQLRKICGFVAQ-EDNLLPLLTVKETLMFSA-NFRLKGMSH 180
IT+ + I K +LRK V Q + L TV + + F NF G S
Sbjct: 62 GTITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNF---GFSE 118
Query: 181 KEKEDRVESLMDELGLTH-------------------VAGSFVGDEE----NRGISGLDS 217
E +++ + ++GL+ +AG + E + +GLD
Sbjct: 119 DEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDP 178
Query: 218 TSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGS 269
++++L KA TV+L H + +Y L+L G ++ + S
Sbjct: 179 EGRKEMMQLFKDYQKAGH-TVILVTHNMD-DVAEYADDVLVLEHGKLIKHAS 228
|
Length = 287 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 2e-04
Identities = 29/84 (34%), Positives = 43/84 (51%), Gaps = 13/84 (15%)
Query: 86 ILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKKPAQLR 145
+LK +SF + +A+VGP+G GKS+LL++++G + P S TV + K
Sbjct: 337 LLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAG-----ELGPLSGTVKVGETVK----- 386
Query: 146 KICGFVAQE-DNLLPLLTVKETLM 168
G+ Q D L P TV E L
Sbjct: 387 --IGYFDQHRDELDPDKTVLEELS 408
|
Length = 530 |
| >gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 2e-04
Identities = 32/125 (25%), Positives = 48/125 (38%), Gaps = 29/125 (23%)
Query: 40 PTPSPSLPPQRLKTTCKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEI 99
P P L+ + N +Y +P+ L L + R E
Sbjct: 323 APAHPKTLPVPLRGEIEFEQVNFAYPARPDQPALDGL--------------NLTVRPGET 368
Query: 100 LAVVGPSGTGKSSLLRII-------SGRVRDQDFDPRSITVNCHQIKKPAQLRKICGFVA 152
+A+VGPSG GKS+L +++ SGR+ D R + PA+LR V
Sbjct: 369 VALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQL--------DPAELRARMALVP 420
Query: 153 QEDNL 157
Q+ L
Sbjct: 421 QDPVL 425
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576 |
| >gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 2e-04
Identities = 56/251 (22%), Positives = 106/251 (42%), Gaps = 56/251 (22%)
Query: 87 LKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRS--ITVNCHQI---KKP 141
L V+ +A++G +G+GKS+LL+ ++G ++ P S +T+ I KK
Sbjct: 23 LYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQ-----PTSGTVTIGERVITAGKKN 77
Query: 142 AQL---RKICGFVAQ--EDNLLPLLTVKETLMFS-ANFRLKGMSHKEKEDRVESLMDELG 195
+L RK G V Q E L TV++ + F NF G+S ++ + + +++ +G
Sbjct: 78 KKLKPLRKKVGIVFQFPEHQLFE-ETVEKDICFGPMNF---GVSEEDAKQKAREMIELVG 133
Query: 196 LTH-------------------VAGSF-------VGDEENRGISGLDSTSALQVIELLAS 229
L +AG V DE +GLD +++E+
Sbjct: 134 LPEELLARSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPT---AGLDPKGRKEMMEMFYK 190
Query: 230 MAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGSLELL---EETINNLGYQIPT 286
+ K K T VL H +Y + +++ +G+V G+ + + + +G +P
Sbjct: 191 LHKEKGLTTVLVTHSME-DAARYADQIVVMHKGTVFLQGTPREIFADPDELEAIGLDLPE 249
Query: 287 QLNAIEFAMEI 297
++F +
Sbjct: 250 ---TVKFKRAL 257
|
Length = 290 |
| >gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 44.1 bits (105), Expect = 2e-04
Identities = 47/247 (19%), Positives = 92/247 (37%), Gaps = 72/247 (29%)
Query: 69 NTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDP 128
+ ILS + K + ++F + +A+VGPSG GK+SLL + G F P
Sbjct: 354 DLEILSP---DGKT---LAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLG------FLP 401
Query: 129 R--SITVNCHQIKK--PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKE 184
S+ +N ++++ P RK +V Q LP T+++ ++ +
Sbjct: 402 YQGSLKINGIELRELDPESWRKHLSWVGQNP-QLPHGTLRDNVLLGN--------PDASD 452
Query: 185 DRVESLMD-----------ELGLTHVAGSFVGDEENRGISG------------------- 214
++++ ++ GL G ++ G+S
Sbjct: 453 EQLQQALENAWVSEFLPLLPQGLDTPIG-----DQAAGLSVGQAQRLALARALLQPCQLL 507
Query: 215 --------LDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVH 266
LD+ S V++ L + ++ + T ++ HQ L + ++ G +V
Sbjct: 508 LLDEPTASLDAHSEQLVMQALNAASRRQ--TTLMVTHQLED--LAQWDQIWVMQDGQIVQ 563
Query: 267 YGSLELL 273
G L
Sbjct: 564 QGDYAEL 570
|
Length = 588 |
| >gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C | Back alignment and domain information |
|---|
Score = 42.8 bits (102), Expect = 2e-04
Identities = 25/88 (28%), Positives = 42/88 (47%), Gaps = 15/88 (17%)
Query: 86 ILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKKPAQLR 145
LK ++ E E++A+VGP G+GKSSLL + G + S++V
Sbjct: 20 TLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLS---GSVSVPGS--------- 67
Query: 146 KICGFVAQEDNLLPLLTVKETLMFSANF 173
+V+QE + T++E ++F F
Sbjct: 68 --IAYVSQEPWIQN-GTIRENILFGKPF 92
|
This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.1 bits (104), Expect = 2e-04
Identities = 46/170 (27%), Positives = 83/170 (48%), Gaps = 21/170 (12%)
Query: 39 QPTPSPSLPPQRLKTTCK----VTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEA 94
P+ PP T + VRNL + +L+ + E +H ++ VSF+
Sbjct: 292 LEHPAKQEPPIEQDTVVDGEPILQVRNLVTRFPLRSGLLNRVTRE----VHAVEKVSFDL 347
Query: 95 RDSEILAVVGPSGTGKS----SLLRIISGRVRDQDFDPRSI-TVNCHQIKKPAQLRKICG 149
E L++VG SG+GKS +LLR++ + + F+ + I T++ +++ LR+
Sbjct: 348 WPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQA---LRRDIQ 404
Query: 150 FVAQED--NLLPLLTVKETLMFSANFRLKGMSH-KEKEDRVESLMDELGL 196
F+ Q+ +L P TV +++M R+ G+ K RV L++ +GL
Sbjct: 405 FIFQDPYASLDPRQTVGDSIM--EPLRVHGLLPGKAAAARVAWLLERVGL 452
|
Length = 623 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 2e-04
Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 10/90 (11%)
Query: 86 ILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRS--ITVNCHQIKKPAQ 143
+L VS + E +A++GPSG+GKS+LL ++G DP +T++ + Q
Sbjct: 350 VLDGVSLDLPPGERVAILGPSGSGKSTLLATLAGL-----LDPLQGEVTLDGVPVSSLDQ 404
Query: 144 --LRKICGFVAQEDNLLPLLTVKETLMFSA 171
+R+ AQ+ +L TV+E L +
Sbjct: 405 DEVRRRVSVCAQDAHLFD-TTVRENLRLAR 433
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 2e-04
Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 14/73 (19%)
Query: 45 SLPPQRLKTTCKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVG 104
SL P LK V +N+++A P P +L+ VSF E+ A+VG
Sbjct: 2 SLAPDHLKG--IVKFQNVTFAY-PT---------RPDTL--VLQDVSFTLHPGEVTALVG 47
Query: 105 PSGTGKSSLLRII 117
PSG+GKS+++ ++
Sbjct: 48 PSGSGKSTVVALL 60
|
TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226 |
| >gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.5 bits (100), Expect = 4e-04
Identities = 28/110 (25%), Positives = 46/110 (41%), Gaps = 11/110 (10%)
Query: 85 HILKSVSFEARDSEILAVVGPSGTGKSSLLR-------IISGRVRDQDFDPRSITVNCHQ 137
H L ++ + + A++GPSG GKS+LLR +I G D +
Sbjct: 20 HALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSG 79
Query: 138 IKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRV 187
LR+ G V Q N P ++ E + + R+ G +K+ D +
Sbjct: 80 A-DVVALRRKIGMVFQRPNPFP-KSIYENVAYGP--RIHGEKNKKTLDTI 125
|
Length = 253 |
| >gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.3 bits (99), Expect = 4e-04
Identities = 58/225 (25%), Positives = 92/225 (40%), Gaps = 53/225 (23%)
Query: 87 LKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKKPAQ--- 143
L +S + + E+ A++GPSG GKS+ LR ++ R+ D D + IT +IK Q
Sbjct: 20 LHGISLDFEEKELTALIGPSGCGKSTFLRCLN-RMND-DIENIKIT---GEIKFEGQNIY 74
Query: 144 --------LRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKED-RVESLMDEL 194
LRK G V Q+ P +V + + + ++ G+ KE D RVE + +
Sbjct: 75 GSKMDLVELRKEVGMVFQQPTPFP-FSVYDNVAYG--LKIAGVKDKELIDQRVEESLKQA 131
Query: 195 G--------LTHVAGSFVGDEENR------------------GISGLDSTSALQVIELLA 228
L A +F G ++ R S LD S+ ++ E L
Sbjct: 132 AIWKETKDNLDRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETL- 190
Query: 229 SMAKAKQRTVVLSIH--QPSYRILQYISKFLILSRGSVVHYGSLE 271
M Q T ++ H Q + RI + L G ++ G E
Sbjct: 191 -MELKHQYTFIMVTHNLQQAGRISDQTA---FLMNGDLIEAGPTE 231
|
Length = 251 |
| >gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 42.9 bits (101), Expect = 4e-04
Identities = 34/119 (28%), Positives = 55/119 (46%), Gaps = 16/119 (13%)
Query: 85 HILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRS---ITVNCHQIKK- 140
H + VS EI A++G SG GKS+LLR+++G F+ + I ++ +
Sbjct: 33 HAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAG------FEQPTAGQIMLDGVDLSHV 86
Query: 141 PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHV 199
P R I + Q L P +TV++ + F + + E RV + LGL H+
Sbjct: 87 PPYQRPI-NMMFQSYALFPHMTVEQNIAFG--LKQDKLPKAEIASRVNEM---LGLVHM 139
|
Length = 377 |
| >gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 4e-04
Identities = 33/112 (29%), Positives = 55/112 (49%), Gaps = 16/112 (14%)
Query: 87 LKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRS-----ITVNCHQIKKP 141
L +S E +++ A++GPSG GKS+ LR ++ R D P + I ++ I P
Sbjct: 22 LHDISLEFEQNQVTALIGPSGCGKSTFLRCLN---RMNDLIPGARVEGEILLDGENIYDP 78
Query: 142 ----AQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEK-EDRVE 188
+LR+ G V Q+ N P ++ E + + R+ G+ K +RVE
Sbjct: 79 HVDVVELRRRVGMVFQKPNPFP-KSIFENVAYG--LRVNGVKDKAYLAERVE 127
|
Length = 253 |
| >gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 4e-04
Identities = 19/77 (24%), Positives = 32/77 (41%), Gaps = 19/77 (24%)
Query: 40 PTPSPSLPPQRLKTTCKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEI 99
+ K+ VRNL++ H LK+++ + +++
Sbjct: 1 AAMMSMVATAP----SKIQVRNLNFYYGKF---------------HALKNINLDIAKNQV 41
Query: 100 LAVVGPSGTGKSSLLRI 116
A +GPSG GKS+LLR
Sbjct: 42 TAFIGPSGCGKSTLLRT 58
|
Length = 260 |
| >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 4e-04
Identities = 53/241 (21%), Positives = 101/241 (41%), Gaps = 42/241 (17%)
Query: 60 RNLSYAIQPNTSI-LSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIIS 118
+ + N I ++ + + +IL +S + + +VG SG+GKS+L +++
Sbjct: 462 KKRTELNNLNGDIVINDVSYSYGYGSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLV 521
Query: 119 GRVRDQDFDPRS--ITVNCHQIKK--PAQLRKICGFVAQE---------DNLLPLLTVKE 165
G F RS I +N +K LR+ ++ QE +NL LL KE
Sbjct: 522 GF-----FQARSGEILLNGFSLKDIDRHTLRQFINYLPQEPYIFSGSILENL--LLGAKE 574
Query: 166 TLMFSANFRLKGMSHKEKEDRVESLMDELG--LTHVAGSFVGDEENR-----------GI 212
+ S + E +D +E++ L+ S G ++ R +
Sbjct: 575 NV--SQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTDSKV 632
Query: 213 SGLD-STSALQVI---ELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYG 268
LD STS L I +++ ++ + +T++ H+ S + + K ++L G ++ G
Sbjct: 633 LILDESTSNLDTITEKKIVNNLLNLQDKTIIFVAHRLS--VAKQSDKIIVLDHGKIIEQG 690
Query: 269 S 269
S
Sbjct: 691 S 691
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708 |
| >gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 42.9 bits (102), Expect = 4e-04
Identities = 28/90 (31%), Positives = 43/90 (47%), Gaps = 14/90 (15%)
Query: 80 PKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIK 139
P P +LK +S + + E +A++G +G GKS+LL+++ R D I +N I
Sbjct: 349 PDQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLL---TRAWDPQQGEILLNGQPIA 405
Query: 140 K--PAQLRKICGFVAQ---------EDNLL 158
A LR+ V+Q DNLL
Sbjct: 406 DYSEAALRQAISVVSQRVHLFSATLRDNLL 435
|
Length = 574 |
| >gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 42.3 bits (99), Expect = 4e-04
Identities = 59/251 (23%), Positives = 108/251 (43%), Gaps = 36/251 (14%)
Query: 87 LKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKKPAQLRK 146
L++++ + E + ++G +G+GKS+L ++G +R Q ++ K +RK
Sbjct: 18 LENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRK 77
Query: 147 ICGFVAQE-DNLLPLLTVKETLMFSA-NFRLKGMSHKEKEDRVESLMDELGL-------- 196
+ G V Q + TV+E L F N L + E RV+ + E+GL
Sbjct: 78 LVGIVFQNPETQFVGRTVEEDLAFGPENLCLPPI---EIRKRVDRALAEIGLEKYRHRSP 134
Query: 197 ----------THVAGSFVGDEE----NRGISGLDSTSALQVIELLASMAKAKQRTVVLSI 242
+AG + E + S LD S + V+E + + + K +T+V
Sbjct: 135 KTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHE-KGKTIVYIT 193
Query: 243 HQPSYRILQYISKFLILSRGSVVHYGSLE--LLEETINNLGYQIPTQLNAIEFAMEI-MH 299
H + L + +++ RG +V G E L + ++ LG P+ IE A + MH
Sbjct: 194 H--NLEELHDADRIIVMDRGKIVLEGEPENVLSDVSLQTLGLTPPS---LIELAENLKMH 248
Query: 300 PLEDSYSNNNN 310
+ + N ++
Sbjct: 249 GVVIPWENTSS 259
|
Length = 274 |
| >gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D | Back alignment and domain information |
|---|
Score = 41.0 bits (97), Expect = 4e-04
Identities = 22/63 (34%), Positives = 30/63 (47%), Gaps = 14/63 (22%)
Query: 57 VTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRI 116
+ + NLS A +L L SFE + + L + GPSGTGKSSL R
Sbjct: 1 IELENLSLATPDGRVLLKDL--------------SFEIKPGDRLLITGPSGTGKSSLFRA 46
Query: 117 ISG 119
++G
Sbjct: 47 LAG 49
|
Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166 |
| >gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 42.5 bits (100), Expect = 4e-04
Identities = 29/104 (27%), Positives = 49/104 (47%), Gaps = 16/104 (15%)
Query: 102 VVGPSGTGKSSLLRIISGRVRDQD----FDPRSITVNCHQIKKPAQLRKICGFVAQEDNL 157
++GPSG GK++LLR+++G + D +T P LR I V Q L
Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVT------NVPPHLRHI-NMVFQSYAL 53
Query: 158 LPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAG 201
P +TV+E + F +++ + E + RV ++ L L +
Sbjct: 54 FPHMTVEENVAFG--LKMRKVPRAEIKPRV---LEALRLVQLEE 92
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325 |
| >gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 4e-04
Identities = 39/144 (27%), Positives = 70/144 (48%), Gaps = 21/144 (14%)
Query: 59 VRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIIS 118
VRNLS + T + + + +K VSF R+ + LA++G +G+GKS+L ++++
Sbjct: 7 VRNLSKTFRYRTGLFR------RQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLA 60
Query: 119 GRVRDQDFDPRS--ITVNCHQIK-KPAQLR-KICGFVAQEDN--LLPLLTVKETLMFSAN 172
G + +P S I +N H + R K + Q+ N L P L + + L +
Sbjct: 61 GMI-----EPTSGEILINDHPLHFGDYSFRSKRIRMIFQDPNTSLNPRLRIGQIL----D 111
Query: 173 FRLKGMSHKEKEDRVESLMDELGL 196
F L+ + E E R + + + L +
Sbjct: 112 FPLRLNTDLEPEQRRKQIFETLRM 135
|
Length = 267 |
| >gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 5e-04
Identities = 17/33 (51%), Positives = 23/33 (69%)
Query: 87 LKSVSFEARDSEILAVVGPSGTGKSSLLRIISG 119
L +S E R EIL +VGP+G GKS+LL ++G
Sbjct: 12 LGPLSAEVRAGEILHLVGPNGAGKSTLLARMAG 44
|
Length = 248 |
| >gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 41.8 bits (98), Expect = 5e-04
Identities = 30/117 (25%), Positives = 50/117 (42%), Gaps = 14/117 (11%)
Query: 86 ILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQD----FDPRSITVNCHQIKKP 141
IL ++S R E +A+ GPSG GKS+LL+I++ + F+ ++ KP
Sbjct: 18 ILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVST-----LKP 72
Query: 142 AQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTH 198
R+ + AQ L TV++ L+F R + + L+ L
Sbjct: 73 EAYRQQVSYCAQTPALFG-DTVEDNLIFPWQIR----NRRPDRAAALDLLARFALPD 124
|
Length = 223 |
| >gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Score = 41.7 bits (98), Expect = 5e-04
Identities = 16/32 (50%), Positives = 24/32 (75%)
Query: 90 VSFEARDSEILAVVGPSGTGKSSLLRIISGRV 121
VSF+ E+L +VG SG+GKS+LL ++GR+
Sbjct: 22 VSFDLYPGEVLGIVGESGSGKSTLLGCLAGRL 53
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253 |
| >gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 5e-04
Identities = 26/79 (32%), Positives = 42/79 (53%), Gaps = 15/79 (18%)
Query: 87 LKSVSFEARDSEILAVVGPSGTGKSSLLRII-------SGRVRDQDFDPRSITVNCHQIK 139
++ VSFEA+ + +A+VGP+G GKS+L+ ++ SGR+ D R++T
Sbjct: 351 VEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTR------ 404
Query: 140 KPAQLRKICGFVAQEDNLL 158
A LR+ V Q+ L
Sbjct: 405 --ASLRRNIAVVFQDAGLF 421
|
Length = 588 |
| >gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 5e-04
Identities = 41/149 (27%), Positives = 63/149 (42%), Gaps = 32/149 (21%)
Query: 59 VRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSS------ 112
+ NL++ T E K L +V+ E D E + ++G +G+GKS+
Sbjct: 5 IENLTHIYMEGTP------FEKKA----LDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLN 54
Query: 113 -LLRIISGRVRDQDFDPRSITVNCHQIKKPAQLRKICGFVAQ--EDNLLPLLTVKETLMF 169
LL+ SG++ D V I RK G V Q E L +ET+
Sbjct: 55 GLLKPTSGKIIIDGVDITDKKVKLSDI------RKKVGLVFQYPEYQLF-----EETIEK 103
Query: 170 SANFRLK--GMSHKEKEDRVESLMDELGL 196
F G+S +E E+RV+ M+ +GL
Sbjct: 104 DIAFGPINLGLSEEEIENRVKRAMNIVGL 132
|
Length = 287 |
| >gnl|CDD|222104 pfam13401, AAA_22, AAA domain | Back alignment and domain information |
|---|
Score = 39.9 bits (94), Expect = 6e-04
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 5/56 (8%)
Query: 94 ARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKKPAQL-RKIC 148
R + I + G SG+GK++LLR R+ Q + R + V + P L RKI
Sbjct: 1 RRGAGIGVLTGESGSGKTTLLR----RLARQLPNRRVVYVEAPSLGTPKDLLRKIL 52
|
Length = 124 |
| >gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.7 bits (98), Expect = 6e-04
Identities = 58/250 (23%), Positives = 100/250 (40%), Gaps = 58/250 (23%)
Query: 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLR 115
+ N+SY Q T +H + + FE + A+VG +G+GKS+L++
Sbjct: 2 TIRFDNVSYTYQKGTPYEHQAIH------DV--NTEFE--QGKYYAIVGQTGSGKSTLIQ 51
Query: 116 IISGRVRDQDFDPRSITVNCHQI--------KKPAQLRKICGFVAQ--EDNLLPLLTVKE 165
I+ ++ P + TV I K +RK G V Q E L +E
Sbjct: 52 NINALLK-----PTTGTVTVDDITITHKTKDKYIRPVRKRIGMVFQFPESQLFEDTVERE 106
Query: 166 TLMFSANFRLKGMSHKEKEDRVESLMDELGLT---------HVAGS-------------- 202
+ NF M+ E ++ L+ +LG + ++G
Sbjct: 107 IIFGPKNF---KMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSILAMN 163
Query: 203 ---FVGDEENRGISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLIL 259
V DE +GLD S QV+ LL S+ + +T++L H + + +Y + +++
Sbjct: 164 PDIIVLDEPT---AGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMN-EVARYADEVIVM 219
Query: 260 SRGSVVHYGS 269
GS+V S
Sbjct: 220 KEGSIVSQTS 229
|
Length = 286 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 42.1 bits (100), Expect = 7e-04
Identities = 28/119 (23%), Positives = 51/119 (42%), Gaps = 15/119 (12%)
Query: 87 LKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKK---PAQ 143
+K VSFE R EI+ + G +G G+S L+ ISG + I +N + P +
Sbjct: 274 VKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPAS---GRILLNGKDVLGRLSPRE 330
Query: 144 LRKI-CGFVAQE---DNLLPLLTVKETLMFS-----ANFRLKGMSHKEKEDRVESLMDE 193
R++ +V ++ L+ L++ E L+ R + + L++E
Sbjct: 331 RRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEE 389
|
Length = 501 |
| >gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.4 bits (97), Expect = 8e-04
Identities = 49/213 (23%), Positives = 97/213 (45%), Gaps = 48/213 (22%)
Query: 85 HILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVR---------DQDFDPRSITVNC 135
H LK+++ ++E+ A++GPSG GKS+ ++ ++ ++ + +++ +I
Sbjct: 26 HALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGK 85
Query: 136 HQIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEK-EDRVE------ 188
+ +LRK G V Q+ N P ++ + + + R+ G +K+K ++ VE
Sbjct: 86 VDL---VELRKNIGMVFQKGNPFP-QSIFDNVAYGP--RIHGTKNKKKLQEIVEKSLKDV 139
Query: 189 SLMDELG--LTHVAGSFVGDEENR------------------GISGLDSTSALQVIELLA 228
+L DE+ L A S G ++ R S LD S ++ EL
Sbjct: 140 ALWDEVKDRLHTQALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEEL-- 197
Query: 229 SMAKAKQR-TVVLSIH--QPSYRILQYISKFLI 258
+ K K++ T+V+ H Q + R+ + F +
Sbjct: 198 -ILKLKEKYTIVIVTHNMQQAARVSDQTAFFYM 229
|
Length = 259 |
| >gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 8e-04
Identities = 16/33 (48%), Positives = 23/33 (69%)
Query: 86 ILKSVSFEARDSEILAVVGPSGTGKSSLLRIIS 118
IL ++SF R E + GPSG GKS+LL+I++
Sbjct: 22 ILNNISFSLRAGEFKLITGPSGCGKSTLLKIVA 54
|
Length = 225 |
| >gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 8e-04
Identities = 34/115 (29%), Positives = 50/115 (43%), Gaps = 10/115 (8%)
Query: 86 ILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQI-KKPAQL 144
L +S E + + + V+G +G GKS+LL I+G D I ++ + KK
Sbjct: 21 ALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAG---DLKPTSGQILIDGVDVTKKSVAK 77
Query: 145 R-KICGFVAQ--EDNLLPLLTVKETLMFSANFRLK--GMSHKEKEDRVESLMDEL 194
R + V Q P LT++E L A R K G+S E R S + L
Sbjct: 78 RANLLARVFQDPLAGTAPELTIEENLAL-AESRGKKRGLSSALNERRRSSFRERL 131
|
Length = 263 |
| >gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.7 bits (98), Expect = 8e-04
Identities = 52/231 (22%), Positives = 91/231 (39%), Gaps = 66/231 (28%)
Query: 84 LHILKSVSFEARDSEILAVVGPSGTGKSSLLRIIS------------GRVR-------DQ 124
L VS + ++++ A++GPSG GKS+ LR I+ G + D
Sbjct: 52 EQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDA 111
Query: 125 DFDPRSITVNCHQIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKE 184
D D P LR+ G V Q+ N P ++ + + + +++G E
Sbjct: 112 DVD-------------PVALRRRIGMVFQKPNPFP-KSIYDNVAYG--LKIQGYDGDIDE 155
Query: 185 ------------DRVESLMDELGLTH---------VAGSFVGDEE----NRGISGLDSTS 219
D V+ +D GL +A + D E + S LD +
Sbjct: 156 RVEESLRRAALWDEVKDQLDSSGLDLSGGQQQRLCIARAIAPDPEVILMDEPASALDPVA 215
Query: 220 ALQVIELLASMAKAKQRTVVLSIH--QPSYRILQYISKFLILSRGSVVHYG 268
++ +L+ + A++ TVV+ H Q + RI + F L+ G +V +
Sbjct: 216 TSKIEDLIEEL--AEEYTVVIVTHNMQQAARISDKTAVF--LTGGELVEFD 262
|
Length = 285 |
| >gnl|CDD|221721 pfam12698, ABC2_membrane_3, ABC-2 family transporter protein | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 0.001
Identities = 26/148 (17%), Positives = 53/148 (35%), Gaps = 14/148 (9%)
Query: 396 LGLFAFSLSFLLSSTVEALPIYLQERRV----LMKEASREAYRISSYLIANTIVFLPFLF 451
LGL F L + + + + +E R+ L+ S Y + L + + L
Sbjct: 98 LGLLLFLLILIGALIIALSIVEEKESRIKERLLVSGVSPLKYLLGKILGDLLVGLIQLLI 157
Query: 452 VVSLLFAIPVYWIVGLNPSIEAFVFFIFVVWLIVLMASSLVLFLSAISPDFISGNSL--I 509
++ LLF + + + + + L L +L L ++ + + + I
Sbjct: 158 ILLLLFGLGI--------PFGNLLLLLLLFLLYGLAYIALGALLGSLFKNSEAAILVISI 209
Query: 510 CTVLGAFFLFSGYFIPKEYIPKYWIFMY 537
+L + F + +P WIF
Sbjct: 210 LILLLSGFFGGLFPLPNMPSFLQWIFSI 237
|
This family is related to the ABC-2 membrane transporter family pfam01061. Length = 278 |
| >gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 0.001
Identities = 54/234 (23%), Positives = 96/234 (41%), Gaps = 32/234 (13%)
Query: 80 PKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQI- 138
P L +SF A++G +G+GKS++ ++I+G + D ITV+ +
Sbjct: 16 PDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLT 75
Query: 139 -KKPAQLRKICGFVAQE-DNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGL 196
K +R+ G V Q DN TV + + F R + E V ++ ++G+
Sbjct: 76 AKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLENR--AVPRPEMIKIVRDVLADVGM 133
Query: 197 THVAGS----FVGDEENR-GISGL-----------DSTSAL------QVIELLASMAKAK 234
S G ++ R I+G+ +STS L Q+++L+ + K
Sbjct: 134 LDYIDSEPANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKN 193
Query: 235 QRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGSLELL---EETINNLGYQIP 285
TV+ H + + L+L G ++ GS + E + +G IP
Sbjct: 194 NLTVISITHDIDEANMA--DQVLVLDDGKLLAQGSPVEIFSKVEMLKEIGLDIP 245
|
Length = 282 |
| >gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.0 bits (96), Expect = 0.001
Identities = 50/189 (26%), Positives = 75/189 (39%), Gaps = 43/189 (22%)
Query: 27 EEYSTSPSSSFYQPTPSPSLPPQRLKTTCKVTVRNLSYAIQPNTSILSHLLHEPKVPLHI 86
E TS S+ T LPP+R K V+ + + N SI
Sbjct: 6 EAKETSKSAPAETATRDIYLPPERKK----VSGGGKPHVVAKNFSIYYG-------EFEA 54
Query: 87 LKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCH---------- 136
+K V+ + + A++GPSG GKS+ LR I+ R D P +CH
Sbjct: 55 VKKVNADILSKYVTAIIGPSGCGKSTFLRAIN---RMNDLIP-----SCHTTGALMFDGE 106
Query: 137 ----QIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHK-------EKED 185
+ LRK G V Q+ N P ++ + + + RL G++ K EK
Sbjct: 107 DIYGKFTDEVLLRKKIGMVFQKPNPFP-KSIFDNIAYGP--RLHGINDKKQLEEIVEKSL 163
Query: 186 RVESLMDEL 194
R +L DE+
Sbjct: 164 RKAALWDEV 172
|
Length = 286 |
| >gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 0.001
Identities = 26/82 (31%), Positives = 38/82 (46%), Gaps = 8/82 (9%)
Query: 85 HILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPR---SITVNCHQIKKP 141
L +S + + A +GPSG GKS+LLR + R+ D + R I ++ I
Sbjct: 39 QALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFN-RMNDLVDNCRIEGEIRLDGQNIYDK 97
Query: 142 ----AQLRKICGFVAQEDNLLP 159
A+LR+ G V Q N P
Sbjct: 98 KVDVAELRRRVGMVFQRPNPFP 119
|
Length = 272 |
| >gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 0.001
Identities = 44/181 (24%), Positives = 81/181 (44%), Gaps = 34/181 (18%)
Query: 85 HILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKKPAQL 144
+ ++S + + ++GP+G GKS+LL++I+G +R I + H + L
Sbjct: 14 TAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRP---TSGEIIFDGHPWTR-KDL 69
Query: 145 RKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHV----A 200
KI G + + L LT +E L L G+ + R++ +++ + LT+ A
Sbjct: 70 HKI-GSLIESPPLYENLTARENLKVHT--TLLGLP----DSRIDEVLNIVDLTNTGKKKA 122
Query: 201 GSF-VGDEENRGIS-----------------GLDSTSALQVIELLASMAKAKQRTVVLSI 242
F +G ++ GI+ GLD ++ EL+ S + + TV+LS
Sbjct: 123 KQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPE-QGITVILSS 181
Query: 243 H 243
H
Sbjct: 182 H 182
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223 |
| >gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 0.001
Identities = 20/63 (31%), Positives = 35/63 (55%), Gaps = 6/63 (9%)
Query: 59 VRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIIS 118
VRNLS + T V +K +SF R+ + LA++G +G+GKS+L ++++
Sbjct: 7 VRNLSKTFRYRTG----WFRRQTV--EAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLA 60
Query: 119 GRV 121
G +
Sbjct: 61 GMI 63
|
Length = 267 |
| >gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 0.001
Identities = 30/132 (22%), Positives = 57/132 (43%), Gaps = 17/132 (12%)
Query: 73 LSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIIS-------GRVRDQD 125
L+H H + + ++ +SFE EI+ +G +G GKS+ L++++ G+VR
Sbjct: 26 LNHFFHRKERSIEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNG 85
Query: 126 FDPRSITVNCHQIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKED 185
DP ++ LR I + Q+ L L ++ + + E +
Sbjct: 86 KDPFR--------RREEYLRSIGLVMGQKLQLWWDLPALDS--LEVLKLIYEIPDDEFAE 135
Query: 186 RVESLMDELGLT 197
R++ L + L L
Sbjct: 136 RLDFLTEILDLE 147
|
Length = 325 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 40.6 bits (95), Expect = 0.002
Identities = 37/137 (27%), Positives = 57/137 (41%), Gaps = 41/137 (29%)
Query: 89 SVSFEARDSEILAVVGPSGTGKSSLLRIISG-----------RVRDQDFDPRSITVNCHQ 137
+VS E ++ EI +VG SG GK++L +II+G RV D+ D
Sbjct: 302 NVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVD---------- 351
Query: 138 IKKPAQL-----RKICGFVAQEDNLLPLLTVKETL-------------MFSANFRLK--G 177
+ KP ++ G + QE +L P TV + L A LK G
Sbjct: 352 MTKPGPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDELARMKAVITLKMVG 411
Query: 178 MSHKEKEDRVESLMDEL 194
++ E+ ++ DEL
Sbjct: 412 FDEEKAEEILDKYPDEL 428
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.6 bits (95), Expect = 0.002
Identities = 55/226 (24%), Positives = 97/226 (42%), Gaps = 59/226 (26%)
Query: 85 HILKSVSFEARDSEILAVVGPSGTGKSSLLRII------------SGRV--RDQDFDPRS 130
H LK+++ + ++E+ A++GPSG GKS+ ++ + +G++ RDQ+ +S
Sbjct: 38 HALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKS 97
Query: 131 ITVNCHQIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHK-------EK 183
+V +LR G V Q+ N P ++ + + + ++ G+ K EK
Sbjct: 98 YSVE--------ELRTNVGMVFQKPNPFP-KSIYDNVTYGP--KIHGIKDKKTLDEIVEK 146
Query: 184 EDRVESLMDELG--LTHVAGSFVGDEENR------------------GISGLDSTSALQV 223
R ++ DEL L A G ++ R S LD S L+V
Sbjct: 147 SLRGAAIWDELKDRLHDNAYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKV 206
Query: 224 IELLASMAKAKQRTVVLSIH--QPSYRILQYISKFLILSRGSVVHY 267
EL+ + K ++++ H Q + RI + FL G V Y
Sbjct: 207 EELVQEL--KKDYSIIIVTHNMQQAARISDKTAFFL---NGYVNEY 247
|
Length = 271 |
| >gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 0.002
Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 14/63 (22%)
Query: 57 VTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRI 116
+T+ NLS ++LS L +FE R E L + G SG GK+SLLR
Sbjct: 393 ITLENLSLRTPDGQTLLSEL--------------NFEVRPGERLLITGESGAGKTSLLRA 438
Query: 117 ISG 119
++G
Sbjct: 439 LAG 441
|
Length = 604 |
| >gnl|CDD|227118 COG4778, PhnL, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 40.1 bits (94), Expect = 0.002
Identities = 47/206 (22%), Positives = 80/206 (38%), Gaps = 51/206 (24%)
Query: 82 VPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISG---------RVRDQD------- 125
V L +L++VS E + + GPSG+GKS+LLR + VR +
Sbjct: 22 VRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVT 81
Query: 126 FDPRSITVNCHQIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKED 185
+PR + R G+V+Q ++P ++ + + R G+ +
Sbjct: 82 AEPREVL---------EVRRTTIGYVSQFLRVIPRVSALDVVAEPLLAR--GVPREVARA 130
Query: 186 RVESLMDELGLT----HVA-GSFVGDEENR------------------GISGLDSTSALQ 222
+ L+ L L +A +F G E+ R + LD+T+
Sbjct: 131 KAADLLTRLNLPERLWSLAPATFSGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAV 190
Query: 223 VIELLASMAKAKQRTVVLSIHQPSYR 248
V+EL+ AKA+ +V H R
Sbjct: 191 VVELIRE-AKARGAALVGIFHDEEVR 215
|
Length = 235 |
| >gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 40.1 bits (94), Expect = 0.002
Identities = 9/34 (26%), Positives = 25/34 (73%)
Query: 95 RDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDP 128
+SE++ ++GP+G GK++ +++++G ++ + D
Sbjct: 23 SESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDI 56
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 246 |
| >gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 40.0 bits (94), Expect = 0.002
Identities = 28/88 (31%), Positives = 53/88 (60%), Gaps = 6/88 (6%)
Query: 86 ILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPR--SITVNCHQIKKPAQ 143
LK+VSFE + E +A++G +G+GKS++ +I++G ++ Q + + IT++ +K +
Sbjct: 24 ALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLK---E 80
Query: 144 LRKICGFVAQE-DNLLPLLTVKETLMFS 170
+RK G + Q DN TV++ + F
Sbjct: 81 IRKKIGIIFQNPDNQFIGATVEDDIAFG 108
|
Length = 271 |
| >gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 38.6 bits (91), Expect = 0.003
Identities = 21/91 (23%), Positives = 40/91 (43%), Gaps = 9/91 (9%)
Query: 87 LKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQI--KKPAQL 144
++ VSFE R EI+ + G G G++ L + G IT++ + + P
Sbjct: 16 VRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRP---PASGEITLDGKPVTRRSPRDA 72
Query: 145 RKI-CGFVA---QEDNLLPLLTVKETLMFSA 171
+ +V + + L+ L+V E + S+
Sbjct: 73 IRAGIAYVPEDRKREGLVLDLSVAENIALSS 103
|
This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 182 |
| >gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 39.4 bits (92), Expect = 0.003
Identities = 49/212 (23%), Positives = 86/212 (40%), Gaps = 56/212 (26%)
Query: 87 LKSVSFEARDSEILAVVGPSGTGKSSLLR--------IISGRV------RDQD-FDPRSI 131
+K+V + ++I A +GPSG GKS++LR I RV ++ + P
Sbjct: 26 VKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDV- 84
Query: 132 TVNCHQIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHK-----EKEDR 186
P ++R+ G V Q+ N P ++ + + + A R+ G E+ R
Sbjct: 85 --------DPVEVRRRIGMVFQKPNPFP-KSIYDNIAYGA--RINGYKGDMDELVERSLR 133
Query: 187 VESLMDEL--GLTHVAGSFVGDEENR------------------GISGLDSTSALQVIEL 226
+L DE+ L S G ++ R S LD S L++ EL
Sbjct: 134 QAALWDEVKDKLKQSGLSLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEEL 193
Query: 227 LASMAKAKQRTVVLSIH--QPSYRILQYISKF 256
+ + +Q T+++ H Q + R+ + F
Sbjct: 194 MHEL--KEQYTIIIVTHNMQQAARVSDMTAFF 223
|
Length = 264 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 39.8 bits (93), Expect = 0.004
Identities = 31/119 (26%), Positives = 51/119 (42%), Gaps = 14/119 (11%)
Query: 87 LKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKKPAQLRK 146
L + E R E + + G +G GKS+L++I+SG +D + P +
Sbjct: 17 LDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDG-----EIYWSGSPLKASN 71
Query: 147 I-------CGFVAQEDNLLPLLTVKETLMFSANFRLKG--MSHKEKEDRVESLMDELGL 196
I + QE L+P L+V E + L G M++ R ++L+ EL L
Sbjct: 72 IRDTERAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQL 130
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|237650 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 39.2 bits (91), Expect = 0.004
Identities = 29/99 (29%), Positives = 47/99 (47%), Gaps = 25/99 (25%)
Query: 87 LKSVSFEARDSEILAVVGPSGTGKSSLLRI------------ISGRV--RDQD-FDPRSI 131
L V + +I+A +GPSG GKS+LLR + GR+ RD++ +D +
Sbjct: 36 LVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQIN 95
Query: 132 TVNCHQIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFS 170
+V +LR+ G V Q N P ++ E + F+
Sbjct: 96 SV---------KLRRQVGMVFQRPNPFP-KSIYENIAFA 124
|
Length = 274 |
| >gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 38.4 bits (89), Expect = 0.004
Identities = 25/99 (25%), Positives = 49/99 (49%), Gaps = 6/99 (6%)
Query: 86 ILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKKP--AQ 143
+L+ +SF +L + G +G GK++LL++I+G + + + I IKK
Sbjct: 16 LLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGE---ILFERQSIKKDLCTY 72
Query: 144 LRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKE 182
+++C FV + P LT++E ++ +F + E
Sbjct: 73 QKQLC-FVGHRSGINPYLTLRENCLYDIHFSPGAVGITE 110
|
Length = 200 |
| >gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 39.3 bits (92), Expect = 0.004
Identities = 56/290 (19%), Positives = 119/290 (41%), Gaps = 79/290 (27%)
Query: 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHI--LKSVSFEARDSEILAVVGPSGTGKSS- 112
++ V+N+ + K+P + L +VS E E +A++G +G+GK++
Sbjct: 2 QIKVKNIVK------------IFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTF 49
Query: 113 ------LLRIISGRV----RDQDFDPRSITVNCH------------QIKKPAQLRKICGF 150
LL +G + +D+ ++ +IKK ++R+ G
Sbjct: 50 IEHLNALLLPDTGTIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGV 109
Query: 151 VAQ--EDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAGSFV---- 204
V Q E L T+++ ++F G+S +E + R ++ +GL S++
Sbjct: 110 VFQFAEYQLFE-QTIEKDIIFGP--VSMGVSKEEAKKRAAKYIELVGLDE---SYLQRSP 163
Query: 205 ----GDEENR----GI--------------SGLDSTSALQVIELLASMAKAKQRTVVLSI 242
G ++ R GI +GLD +++E+ ++ K + +T++L
Sbjct: 164 FELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNK-QGKTIILVT 222
Query: 243 HQPSYRILQYISKFLILSRGSVVHYG-SLELLEET---INNLGYQIPTQL 288
H +L++ + + G ++ G + ++L + I N P +L
Sbjct: 223 HDLD-NVLEWTKRTIFFKDGKIIKDGDTYDILSDNKFLIEN--NMEPPKL 269
|
Length = 305 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 627 | |||
| KOG0061 | 613 | consensus Transporter, ABC superfamily (Breast can | 100.0 | |
| TIGR00955 | 617 | 3a01204 The Eye Pigment Precursor Transporter (EPP | 100.0 | |
| PLN03211 | 659 | ABC transporter G-25; Provisional | 100.0 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 100.0 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 100.0 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 100.0 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 100.0 | |
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 100.0 | |
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 100.0 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 100.0 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 100.0 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 100.0 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 100.0 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 100.0 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 100.0 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 100.0 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 100.0 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 100.0 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 100.0 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 100.0 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 100.0 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 100.0 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 100.0 | |
| COG4555 | 245 | NatA ABC-type Na+ transport system, ATPase compone | 100.0 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 100.0 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 100.0 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 100.0 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 100.0 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 100.0 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 100.0 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 100.0 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 100.0 | |
| COG4152 | 300 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 100.0 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 100.0 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 100.0 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 100.0 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 100.0 | |
| COG0411 | 250 | LivG ABC-type branched-chain amino acid transport | 100.0 | |
| COG1137 | 243 | YhbG ABC-type (unclassified) transport system, ATP | 100.0 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 100.0 | |
| COG4604 | 252 | CeuD ABC-type enterochelin transport system, ATPas | 100.0 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 100.0 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 100.0 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 100.0 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 100.0 | |
| COG0444 | 316 | DppD ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 100.0 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 100.0 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 100.0 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 100.0 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 100.0 | |
| COG4559 | 259 | ABC-type hemin transport system, ATPase component | 100.0 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 100.0 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK09473 | 330 | oppD oligopeptide transporter ATP-binding componen | 100.0 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 100.0 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 100.0 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 100.0 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 100.0 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 100.0 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 100.0 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 100.0 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 100.0 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 100.0 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 100.0 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 100.0 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 100.0 | |
| PRK11022 | 326 | dppD dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 100.0 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 100.0 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 100.0 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 100.0 | |
| COG4175 | 386 | ProV ABC-type proline/glycine betaine transport sy | 100.0 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 100.0 | |
| PRK11308 | 327 | dppF dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 100.0 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 100.0 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 100.0 | |
| PRK14267 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 100.0 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 100.0 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 100.0 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 100.0 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 100.0 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 100.0 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 100.0 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG4181 | 228 | Predicted ABC-type transport system involved in ly | 100.0 | |
| PRK09984 | 262 | phosphonate/organophosphate ester transporter subu | 100.0 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 100.0 | |
| PRK15093 | 330 | antimicrobial peptide ABC transporter ATP-binding | 100.0 | |
| PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Prov | 100.0 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 100.0 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 100.0 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 100.0 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 100.0 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 100.0 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13639 | 275 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10253 | 265 | iron-enterobactin transporter ATP-binding protein; | 100.0 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 100.0 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 100.0 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 100.0 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 100.0 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 100.0 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 100.0 | |
| PRK11144 | 352 | modC molybdate transporter ATP-binding protein; Pr | 100.0 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03300 | 232 | ABC_PotA_N PotA is an ABC-type transporter and the | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| COG4525 | 259 | TauB ABC-type taurine transport system, ATPase com | 100.0 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 100.0 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 100.0 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 100.0 | |
| TIGR00968 | 237 | 3a0106s01 sulfate ABC transporter, ATP-binding pro | 100.0 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 100.0 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR01277 | 213 | thiQ thiamine ABC transporter, ATP-binding protein | 100.0 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 100.0 | |
| PRK14274 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03873 | 256 | F420-0_ABC_ATP proposed F420-0 ABC transporter, AT | 100.0 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 100.0 | |
| cd03299 | 235 | ABC_ModC_like Archeal protein closely related to M | 100.0 | |
| PRK14256 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| PRK15112 | 267 | antimicrobial peptide ABC system ATP-binding prote | 100.0 | |
| TIGR02142 | 354 | modC_ABC molybdenum ABC transporter, ATP-binding p | 100.0 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14241 | 258 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 100.0 | |
| PRK14239 | 252 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 100.0 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG4987 | 573 | CydC ABC-type transport system involved in cytochr | 100.0 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 100.0 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 100.0 | |
| PRK14270 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR01978 | 243 | sufC FeS assembly ATPase SufC. SufC is part of the | 100.0 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03267 | 236 | ABC_NatA_like Similar in sequence to NatA, this is | 100.0 | |
| PRK13547 | 272 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK14258 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14240 | 250 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14237 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03234 | 226 | ABCG_White The White subfamily represents ABC tran | 100.0 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 100.0 | |
| PRK14248 | 268 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14262 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14254 | 285 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03740 | 223 | galliderm_ABC gallidermin-class lantibiotic protec | 100.0 | |
| PRK14272 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14275 | 286 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14244 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| PRK14261 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11701 | 258 | phnK phosphonate C-P lyase system protein PhnK; Pr | 100.0 | |
| PRK14251 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14253 | 249 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| cd03297 | 214 | ABC_ModC_molybdenum_transporter ModC is an ABC-typ | 100.0 | |
| PRK14249 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14255 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG4598 | 256 | HisP ABC-type histidine transport system, ATPase c | 100.0 | |
| PRK14271 | 276 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| PRK10418 | 254 | nikD nickel transporter ATP-binding protein NikD; | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| PRK14238 | 271 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| PRK14260 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| TIGR02982 | 220 | heterocyst_DevA ABC exporter ATP-binding subunit, | 100.0 | |
| PRK14236 | 272 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 100.0 | |
| PRK10419 | 268 | nikE nickel transporter ATP-binding protein NikE; | 100.0 | |
| cd03233 | 202 | ABC_PDR_domain1 The pleiotropic drug resistance (P | 100.0 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 100.0 | |
| PRK10247 | 225 | putative ABC transporter ATP-binding protein YbbL; | 100.0 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 100.0 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 100.0 | |
| PRK14246 | 257 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02323 | 253 | CP_lyasePhnK phosphonate C-P lyase system protein | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 99.98 | |
| PRK11160 | 574 | cysteine/glutathione ABC transporter membrane/ATP- | 99.98 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 99.98 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 99.98 | |
| TIGR01184 | 230 | ntrCD nitrate transport ATP-binding subunits C and | 99.98 | |
| PRK14265 | 274 | phosphate ABC transporter ATP-binding protein; Pro | 99.98 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 99.98 | |
| PRK14252 | 265 | phosphate ABC transporter ATP-binding protein; Pro | 99.98 | |
| PRK14266 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 99.98 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 99.98 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 99.98 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 99.98 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 99.98 | |
| TIGR03375 | 694 | type_I_sec_LssB type I secretion system ATPase, Ls | 99.98 | |
| PRK14243 | 264 | phosphate transporter ATP-binding protein; Provisi | 99.98 | |
| TIGR00958 | 711 | 3a01208 Conjugate Transporter-2 (CT2) Family prote | 99.98 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 99.98 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 99.98 | |
| TIGR02770 | 230 | nickel_nikD nickel import ATP-binding protein NikD | 99.98 | |
| PRK14263 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 99.98 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 99.98 | |
| cd03289 | 275 | ABCC_CFTR2 The CFTR subfamily domain 2. The cystic | 99.97 | |
| cd03213 | 194 | ABCG_EPDR ABCG transporters are involved in eye pi | 99.97 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 99.97 | |
| PRK14264 | 305 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 | |
| CHL00131 | 252 | ycf16 sulfate ABC transporter protein; Validated | 99.97 | |
| TIGR03608 | 206 | L_ocin_972_ABC putative bacteriocin export ABC tra | 99.97 | |
| cd03232 | 192 | ABC_PDR_domain2 The pleiotropic drug resistance-li | 99.97 | |
| COG4161 | 242 | ArtP ABC-type arginine transport system, ATPase co | 99.97 | |
| cd03254 | 229 | ABCC_Glucan_exporter_like Glucan exporter ATP-bind | 99.97 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 99.97 | |
| cd03251 | 234 | ABCC_MsbA MsbA is an essential ABC transporter, cl | 99.97 | |
| PRK15056 | 272 | manganese/iron transporter ATP-binding protein; Pr | 99.97 | |
| TIGR01193 | 708 | bacteriocin_ABC ABC-type bacteriocin transporter. | 99.97 | |
| cd03245 | 220 | ABCC_bacteriocin_exporters ABC-type bacteriocin ex | 99.97 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 99.97 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 99.97 | |
| PRK13657 | 588 | cyclic beta-1,2-glucan ABC transporter; Provisiona | 99.97 | |
| PRK13543 | 214 | cytochrome c biogenesis protein CcmA; Provisional | 99.97 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 99.97 | |
| cd03249 | 238 | ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) | 99.97 | |
| cd03230 | 173 | ABC_DR_subfamily_A This family of ATP-binding prot | 99.97 | |
| cd03229 | 178 | ABC_Class3 This class is comprised of all BPD (Bin | 99.97 | |
| PRK13538 | 204 | cytochrome c biogenesis protein CcmA; Provisional | 99.97 | |
| PRK03695 | 248 | vitamin B12-transporter ATPase; Provisional | 99.97 | |
| PRK09544 | 251 | znuC high-affinity zinc transporter ATPase; Review | 99.97 | |
| TIGR02203 | 571 | MsbA_lipidA lipid A export permease/ATP-binding pr | 99.97 | |
| COG4619 | 223 | ABC-type uncharacterized transport system, ATPase | 99.97 | |
| TIGR01846 | 694 | type_I_sec_HlyB type I secretion system ABC transp | 99.97 | |
| PRK09580 | 248 | sufC cysteine desulfurase ATPase component; Review | 99.97 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 99.97 | |
| cd03215 | 182 | ABC_Carb_Monos_II This family represents domain II | 99.97 | |
| COG0396 | 251 | sufC Cysteine desulfurase activator ATPase [Posttr | 99.97 | |
| TIGR02204 | 576 | MsbA_rel ABC transporter, permease/ATP-binding pro | 99.97 | |
| cd03244 | 221 | ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. | 99.97 | |
| cd03253 | 236 | ABCC_ATM1_transporter ATM1 is an ABC transporter t | 99.97 | |
| cd03231 | 201 | ABC_CcmA_heme_exporter CcmA, the ATP-binding compo | 99.97 | |
| cd03369 | 207 | ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty | 99.97 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 99.97 | |
| cd03217 | 200 | ABC_FeS_Assembly ABC-type transport system involve | 99.97 | |
| TIGR01842 | 544 | type_I_sec_PrtD type I secretion system ABC transp | 99.97 | |
| PRK13546 | 264 | teichoic acids export protein ATP-binding subunit; | 99.97 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 99.97 | |
| PRK13539 | 207 | cytochrome c biogenesis protein CcmA; Provisional | 99.97 | |
| PRK10535 | 648 | macrolide transporter ATP-binding /permease protei | 99.97 | |
| cd03220 | 224 | ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo | 99.97 | |
| PRK10789 | 569 | putative multidrug transporter membrane\ATP-bindin | 99.97 | |
| TIGR02324 | 224 | CP_lyasePhnL phosphonate C-P lyase system protein | 99.97 | |
| COG4148 | 352 | ModC ABC-type molybdate transport system, ATPase c | 99.97 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 99.97 | |
| COG4586 | 325 | ABC-type uncharacterized transport system, ATPase | 99.97 | |
| cd03246 | 173 | ABCC_Protease_Secretion This family represents the | 99.97 | |
| TIGR01192 | 585 | chvA glucan exporter ATP-binding protein. This mod | 99.97 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 99.97 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 99.97 | |
| cd03288 | 257 | ABCC_SUR2 The SUR domain 2. The sulfonylurea recep | 99.97 | |
| PRK13540 | 200 | cytochrome c biogenesis protein CcmA; Provisional | 99.97 | |
| COG4618 | 580 | ArpD ABC-type protease/lipase transport system, AT | 99.97 | |
| cd03248 | 226 | ABCC_TAP TAP, the Transporter Associated with Anti | 99.97 | |
| PRK13545 | 549 | tagH teichoic acids export protein ATP-binding sub | 99.97 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 99.97 | |
| TIGR01189 | 198 | ccmA heme ABC exporter, ATP-binding protein CcmA. | 99.97 | |
| COG4674 | 249 | Uncharacterized ABC-type transport system, ATPase | 99.96 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 99.96 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 99.96 | |
| cd03247 | 178 | ABCC_cytochrome_bd The CYD subfamily implicated in | 99.96 | |
| KOG0056 | 790 | consensus Heavy metal exporter HMT1, ABC superfami | 99.96 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 99.96 | |
| TIGR01187 | 325 | potA spermidine/putrescine ABC transporter ATP-bin | 99.96 | |
| PRK10522 | 547 | multidrug transporter membrane component/ATP-bindi | 99.96 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 99.96 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 99.96 | |
| COG4608 | 268 | AppF ABC-type oligopeptide transport system, ATPas | 99.96 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 99.96 | |
| TIGR02857 | 529 | CydD thiol reductant ABC exporter, CydD subunit. U | 99.96 | |
| cd03214 | 180 | ABC_Iron-Siderophores_B12_Hemin ABC transporters, | 99.96 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 99.96 | |
| cd03228 | 171 | ABCC_MRP_Like The MRP (Mutidrug Resistance Protein | 99.96 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 99.96 | |
| COG1134 | 249 | TagH ABC-type polysaccharide/polyol phosphate tran | 99.96 | |
| TIGR03771 | 223 | anch_rpt_ABC anchored repeat-type ABC transporter, | 99.96 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 99.96 | |
| TIGR01166 | 190 | cbiO cobalt transport protein ATP-binding subunit. | 99.96 | |
| TIGR02868 | 529 | CydC thiol reductant ABC exporter, CydC subunit. T | 99.96 | |
| cd03216 | 163 | ABC_Carb_Monos_I This family represents the domain | 99.96 | |
| cd03250 | 204 | ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. | 99.96 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 99.96 | |
| TIGR01194 | 555 | cyc_pep_trnsptr cyclic peptide transporter. This m | 99.96 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 99.96 | |
| COG1101 | 263 | PhnK ABC-type uncharacterized transport system, AT | 99.96 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 99.96 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 99.96 | |
| cd03290 | 218 | ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec | 99.96 | |
| cd03291 | 282 | ABCC_CFTR1 The CFTR subfamily domain 1. The cystic | 99.96 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 99.95 | |
| COG4167 | 267 | SapF ABC-type antimicrobial peptide transport syst | 99.95 | |
| PRK13541 | 195 | cytochrome c biogenesis protein CcmA; Provisional | 99.95 | |
| cd03223 | 166 | ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass | 99.95 | |
| KOG0059 | 885 | consensus Lipid exporter ABCA1 and related protein | 99.95 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 99.95 | |
| cd03237 | 246 | ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o | 99.95 | |
| COG1119 | 257 | ModF ABC-type molybdenum transport system, ATPase | 99.95 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 99.95 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 99.95 | |
| PRK15177 | 213 | Vi polysaccharide export ATP-binding protein VexC; | 99.95 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 99.94 | |
| cd03236 | 255 | ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o | 99.94 | |
| COG4136 | 213 | ABC-type uncharacterized transport system, ATPase | 99.94 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 99.94 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 99.94 | |
| COG5265 | 497 | ATM1 ABC-type transport system involved in Fe-S cl | 99.94 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 99.94 | |
| COG4107 | 258 | PhnK ABC-type phosphonate transport system, ATPase | 99.93 | |
| TIGR00954 | 659 | 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA | 99.93 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 99.93 | |
| cd03221 | 144 | ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is | 99.93 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 99.93 | |
| cd03222 | 177 | ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi | 99.93 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 99.93 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 99.93 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 99.92 | |
| cd00267 | 157 | ABC_ATPase ABC (ATP-binding cassette) transporter | 99.92 | |
| COG4138 | 248 | BtuD ABC-type cobalamin transport system, ATPase c | 99.91 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 99.91 | |
| COG4133 | 209 | CcmA ABC-type transport system involved in cytochr | 99.91 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 99.91 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 99.91 | |
| cd03238 | 176 | ABC_UvrA The excision repair protein UvrA; Nucleot | 99.9 | |
| COG4778 | 235 | PhnL ABC-type phosphonate transport system, ATPase | 99.9 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 99.89 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 99.89 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 99.89 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 99.87 | |
| PF01061 | 210 | ABC2_membrane: ABC-2 type transporter; InterPro: I | 99.87 | |
| COG4615 | 546 | PvdE ABC-type siderophore export system, fused ATP | 99.87 | |
| cd03270 | 226 | ABC_UvrA_I The excision repair protein UvrA domain | 99.86 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 99.86 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 99.85 | |
| cd03271 | 261 | ABC_UvrA_II The excision repair protein UvrA domai | 99.83 | |
| COG4170 | 330 | SapD ABC-type antimicrobial peptide transport syst | 99.81 | |
| cd03278 | 197 | ABC_SMC_barmotin Barmotin is a tight junction-asso | 99.8 | |
| PF00005 | 137 | ABC_tran: ABC transporter This structure is on hol | 99.78 | |
| cd03272 | 243 | ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC protein | 99.75 | |
| COG4178 | 604 | ABC-type uncharacterized transport system, permeas | 99.75 | |
| cd03273 | 251 | ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC protein | 99.74 | |
| cd03240 | 204 | ABC_Rad50 The catalytic domains of Rad50 are simil | 99.74 | |
| KOG0927 | 614 | consensus Predicted transporter (ABC superfamily) | 99.73 | |
| KOG2355 | 291 | consensus Predicted ABC-type transport, ATPase com | 99.73 | |
| PRK00635 | 1809 | excinuclease ABC subunit A; Provisional | 99.73 | |
| cd03274 | 212 | ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC protein | 99.72 | |
| PRK00349 | 943 | uvrA excinuclease ABC subunit A; Reviewed | 99.71 | |
| cd03279 | 213 | ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complex | 99.7 | |
| TIGR00630 | 924 | uvra excinuclease ABC, A subunit. This family is b | 99.65 | |
| KOG0060 | 659 | consensus Long-chain acyl-CoA transporter, ABC sup | 99.65 | |
| KOG0066 | 807 | consensus eIF2-interacting protein ABC50 (ABC supe | 99.6 | |
| cd03283 | 199 | ABC_MutS-like MutS-like homolog in eukaryotes. The | 99.59 | |
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 99.58 | |
| KOG0927 | 614 | consensus Predicted transporter (ABC superfamily) | 99.57 | |
| TIGR01247 | 236 | drrB daunorubicin resistance ABC transporter membr | 99.54 | |
| cd03276 | 198 | ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC protein | 99.53 | |
| cd03275 | 247 | ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC protein | 99.51 | |
| COG2401 | 593 | ABC-type ATPase fused to a predicted acetyltransfe | 99.49 | |
| KOG0062 | 582 | consensus ATPase component of ABC transporters wit | 99.48 | |
| cd00820 | 107 | PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC | 99.48 | |
| KOG0064 | 728 | consensus Peroxisomal long-chain acyl-CoA transpor | 99.47 | |
| cd03280 | 200 | ABC_MutS2 MutS2 homologs in bacteria and eukaryote | 99.46 | |
| TIGR03062 | 208 | pip_yhgE_Cterm YhgE/Pip C-terminal domain. This fa | 99.44 | |
| TIGR01291 | 253 | nodJ ABC-2 type transporter, NodJ family. Nearly a | 99.44 | |
| COG0178 | 935 | UvrA Excinuclease ATPase subunit [DNA replication, | 99.43 | |
| TIGR00025 | 232 | Mtu_efflux ABC transporter efflux protein, DrrB fa | 99.41 | |
| PRK07721 | 438 | fliI flagellum-specific ATP synthase; Validated | 99.4 | |
| TIGR03861 | 253 | phenyl_ABC_PedC alcohol ABC transporter, permease | 99.4 | |
| PRK00635 | 1809 | excinuclease ABC subunit A; Provisional | 99.39 | |
| cd03277 | 213 | ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC protein | 99.37 | |
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 99.33 | |
| cd03243 | 202 | ABC_MutS_homologs The MutS protein initiates DNA m | 99.32 | |
| KOG0062 | 582 | consensus ATPase component of ABC transporters wit | 99.32 | |
| cd03284 | 216 | ABC_MutS1 MutS1 homolog in eukaryotes. The MutS pr | 99.31 | |
| cd03285 | 222 | ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS | 99.31 | |
| TIGR02858 | 270 | spore_III_AA stage III sporulation protein AA. Mem | 99.25 | |
| PRK15066 | 257 | inner membrane transport permease; Provisional | 99.21 | |
| cd03239 | 178 | ABC_SMC_head The structural maintenance of chromos | 99.15 | |
| cd03282 | 204 | ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS | 99.13 | |
| cd03227 | 162 | ABC_Class2 ABC-type Class 2 contains systems invol | 99.11 | |
| cd03241 | 276 | ABC_RecN RecN ATPase involved in DNA repair; ABC ( | 99.07 | |
| KOG0066 | 807 | consensus eIF2-interacting protein ABC50 (ABC supe | 98.98 | |
| KOG0063 | 592 | consensus RNAse L inhibitor, ABC superfamily [RNA | 98.95 | |
| COG0842 | 286 | ABC-type multidrug transport system, permease comp | 98.94 | |
| TIGR03238 | 504 | dnd_assoc_3 dnd system-associated protein 3. cereu | 98.93 | |
| PRK00349 | 943 | uvrA excinuclease ABC subunit A; Reviewed | 98.83 | |
| TIGR00630 | 924 | uvra excinuclease ABC, A subunit. This family is b | 98.83 | |
| cd03287 | 222 | ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS | 98.8 | |
| cd03242 | 270 | ABC_RecF RecF is a recombinational DNA repair ATPa | 98.78 | |
| cd03281 | 213 | ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS | 98.75 | |
| TIGR01026 | 440 | fliI_yscN ATPase FliI/YscN family. This family of | 98.72 | |
| PRK07196 | 434 | fliI flagellum-specific ATP synthase; Validated | 98.71 | |
| TIGR02788 | 308 | VirB11 P-type DNA transfer ATPase VirB11. The VirB | 98.7 | |
| TIGR01248 | 152 | drrC daunorubicin resistance protein C. The model | 98.68 | |
| cd01130 | 186 | VirB11-like_ATPase Type IV secretory pathway compo | 98.59 | |
| cd03286 | 218 | ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS | 98.57 | |
| PRK06002 | 450 | fliI flagellum-specific ATP synthase; Validated | 98.57 | |
| TIGR01069 | 771 | mutS2 MutS2 family protein. Function of MutS2 is u | 98.57 | |
| smart00534 | 185 | MUTSac ATPase domain of DNA mismatch repair MUTS f | 98.52 | |
| PF02463 | 220 | SMC_N: RecF/RecN/SMC N terminal domain; InterPro: | 98.52 | |
| cd01128 | 249 | rho_factor Transcription termination factor rho is | 98.48 | |
| PRK09825 | 176 | idnK D-gluconate kinase; Provisional | 98.45 | |
| TIGR03881 | 229 | KaiC_arch_4 KaiC domain protein, PAE1156 family. M | 98.44 | |
| PRK00064 | 361 | recF recombination protein F; Reviewed | 98.36 | |
| TIGR03518 | 240 | ABC_perm_GldF gliding motility-associated ABC tran | 98.35 | |
| COG0178 | 935 | UvrA Excinuclease ATPase subunit [DNA replication, | 98.35 | |
| PRK06315 | 442 | type III secretion system ATPase; Provisional | 98.3 | |
| PRK08533 | 230 | flagellar accessory protein FlaH; Reviewed | 98.29 | |
| PF12679 | 277 | ABC2_membrane_2: ABC-2 family transporter protein | 98.29 | |
| KOG0063 | 592 | consensus RNAse L inhibitor, ABC superfamily [RNA | 98.27 | |
| COG1682 | 263 | TagG ABC-type polysaccharide/polyol phosphate expo | 98.22 | |
| PRK06995 | 484 | flhF flagellar biosynthesis regulator FlhF; Valida | 98.21 | |
| PRK01889 | 356 | GTPase RsgA; Reviewed | 98.19 | |
| PRK08149 | 428 | ATP synthase SpaL; Validated | 98.19 | |
| COG3910 | 233 | Predicted ATPase [General function prediction only | 98.17 | |
| PF13555 | 62 | AAA_29: P-loop containing region of AAA domain | 98.16 | |
| PF06422 | 103 | PDR_CDR: CDR ABC transporter; InterPro: IPR010929 | 98.14 | |
| TIGR00235 | 207 | udk uridine kinase. Model contains a number of lon | 98.09 | |
| TIGR00767 | 415 | rho transcription termination factor Rho. Members | 98.05 | |
| PRK09270 | 229 | nucleoside triphosphate hydrolase domain-containin | 98.05 | |
| PRK10078 | 186 | ribose 1,5-bisphosphokinase; Provisional | 98.03 | |
| PRK10416 | 318 | signal recognition particle-docking protein FtsY; | 98.02 | |
| TIGR00554 | 290 | panK_bact pantothenate kinase, bacterial type. Sho | 98.01 | |
| PRK13830 | 818 | conjugal transfer protein TrbE; Provisional | 97.99 | |
| PF12698 | 344 | ABC2_membrane_3: ABC-2 family transporter protein; | 97.96 | |
| TIGR02546 | 422 | III_secr_ATP type III secretion apparatus H+-trans | 97.96 | |
| cd01131 | 198 | PilT Pilus retraction ATPase PilT. PilT is a nucle | 97.95 | |
| TIGR00416 | 454 | sms DNA repair protein RadA. The gene protuct code | 97.95 | |
| cd01136 | 326 | ATPase_flagellum-secretory_path_III Flagellum-spec | 97.94 | |
| TIGR02322 | 179 | phosphon_PhnN phosphonate metabolism protein/1,5-b | 97.93 | |
| PRK07594 | 433 | type III secretion system ATPase SsaN; Validated | 97.93 | |
| PRK00409 | 782 | recombination and DNA strand exchange inhibitor pr | 97.93 | |
| PRK07960 | 455 | fliI flagellum-specific ATP synthase; Validated | 97.92 | |
| PRK15176 | 264 | Vi polysaccharide export inner membrane protein Ve | 97.92 | |
| PLN02796 | 347 | D-glycerate 3-kinase | 97.88 | |
| TIGR02655 | 484 | circ_KaiC circadian clock protein KaiC. Members of | 97.85 | |
| PTZ00132 | 215 | GTP-binding nuclear protein Ran; Provisional | 97.82 | |
| PRK09099 | 441 | type III secretion system ATPase; Provisional | 97.82 | |
| PRK09862 | 506 | putative ATP-dependent protease; Provisional | 97.81 | |
| TIGR02524 | 358 | dot_icm_DotB Dot/Icm secretion system ATPase DotB. | 97.81 | |
| PTZ00035 | 337 | Rad51 protein; Provisional | 97.79 | |
| PRK11545 | 163 | gntK gluconate kinase 1; Provisional | 97.78 | |
| PRK00300 | 205 | gmk guanylate kinase; Provisional | 97.77 | |
| PRK03846 | 198 | adenylylsulfate kinase; Provisional | 97.77 | |
| PRK13695 | 174 | putative NTPase; Provisional | 97.77 | |
| PRK05688 | 451 | fliI flagellum-specific ATP synthase; Validated | 97.75 | |
| PLN02318 | 656 | phosphoribulokinase/uridine kinase | 97.75 | |
| cd01120 | 165 | RecA-like_NTPases RecA-like NTPases. This family i | 97.73 | |
| TIGR03497 | 413 | FliI_clade2 flagellar protein export ATPase FliI. | 97.7 | |
| TIGR03498 | 418 | FliI_clade3 flagellar protein export ATPase FliI. | 97.69 | |
| PRK06793 | 432 | fliI flagellum-specific ATP synthase; Validated | 97.68 | |
| cd01854 | 287 | YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil | 97.67 | |
| PRK00098 | 298 | GTPase RsgA; Reviewed | 97.65 | |
| TIGR03496 | 411 | FliI_clade1 flagellar protein export ATPase FliI. | 97.64 | |
| TIGR01420 | 343 | pilT_fam pilus retraction protein PilT. This model | 97.63 | |
| PRK08972 | 444 | fliI flagellum-specific ATP synthase; Validated | 97.62 | |
| cd02025 | 220 | PanK Pantothenate kinase (PanK) catalyzes the phos | 97.62 | |
| PRK05922 | 434 | type III secretion system ATPase; Validated | 97.6 | |
| cd01124 | 187 | KaiC KaiC is a circadian clock protein primarily f | 97.57 | |
| cd01125 | 239 | repA Hexameric Replicative Helicase RepA. RepA is | 97.56 |
| >KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-92 Score=798.30 Aligned_cols=552 Identities=38% Similarity=0.630 Sum_probs=485.1
Q ss_pred cceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEE
Q 006897 54 TCKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITV 133 (627)
Q Consensus 54 ~~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i 133 (627)
...++++|+++...++. ...+++|+|||++++|||++||+|||||||||||++|+|+........|+|.+
T Consensus 23 ~~~~~~~~~~~~~~~~~----------~~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilv 92 (613)
T KOG0061|consen 23 PVKLSFRNLTLSSKEKS----------KKTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILL 92 (613)
T ss_pred cceeEEEEEEEEecCCC----------CccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEE
Confidence 34689999999875331 13578999999999999999999999999999999999998864334599999
Q ss_pred CCccCCChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCC-CCHHHHHHHHHHHHHHcCCccccCCcC--------
Q 006897 134 NCHQIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKG-MSHKEKEDRVESLMDELGLTHVAGSFV-------- 204 (627)
Q Consensus 134 ~g~~~~~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~-~~~~~~~~~v~~~l~~lgL~~~~~~~~-------- 204 (627)
||++ .+.+.+++.+|||.|||.++|.+||+|++.|.+.+|++. .++++++++|+++++++||.+++|+++
T Consensus 93 NG~~-~~~~~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgi 171 (613)
T KOG0061|consen 93 NGRP-RDSRSFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGL 171 (613)
T ss_pred CCcc-CchhhhhheeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCcc
Confidence 9977 456788999999999999999999999999999999876 378899999999999999999998877
Q ss_pred -CccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEE
Q 006897 205 -GDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVV 265 (627)
Q Consensus 205 -gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv 265 (627)
|||||| ||||||+.++.++++.|+++|++ |+|||++.|||+.++++++|++++|.+|+++
T Consensus 172 SGGErkRvsia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~-grtVi~tIHQPss~lf~lFD~l~lLs~G~~v 250 (613)
T KOG0061|consen 172 SGGERKRVSIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARS-GRTVICTIHQPSSELFELFDKLLLLSEGEVV 250 (613)
T ss_pred ccchhhHHHHHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhC-CCEEEEEEeCCcHHHHHHHhHhhhhcCCcEE
Confidence 589999 99999999999999999999987 9999999999999999999999999999999
Q ss_pred eeCCHHHHHHHHHhcCCCCCCCCChHHHHHHhcCCC--cccccCCCCCCcchhhhccCCccccc-----ccCC---Cccc
Q 006897 266 HYGSLELLEETINNLGYQIPTQLNAIEFAMEIMHPL--EDSYSNNNNFLPSVEDAEQFPDLRCE-----KVGG---VEHQ 335 (627)
Q Consensus 266 ~~G~~~~~~~~~~~~g~~~p~~~~~~d~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~---~~~~ 335 (627)
++|+++++.++|.+.|++||.+.||+||++++++.. .+......+........+. .+...+ .... ....
T Consensus 251 y~G~~~~~~~ff~~~G~~~P~~~Npadf~l~l~s~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 329 (613)
T KOG0061|consen 251 YSGSPRELLEFFSSLGFPCPELENPADFLLDLLSVDSGTRELEEAVRIAKLINKFSQ-TDNLKKTLEALEKSLSTSKKVE 329 (613)
T ss_pred EecCHHHHHHHHHhCCCCCCCcCChHHHHHHHHccCCCchhHHhHHHHHHHhhhccc-cchhhhhHHHHhhhcccccccc
Confidence 999999999999999999999999999999998743 1110000000000000000 000000 0000 0011
Q ss_pred ccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHHHHHHHHHH-HHH
Q 006897 336 QHAFFLILYEIMVLCSRFWKIIYRTKQLFLARTMQALVGGFGLGSVYVRVRKDEAGVAERLGLFAFSLSFLLSSTV-EAL 414 (627)
Q Consensus 336 ~~~~~~~~~q~~~l~~R~~~~~~Rd~~~~~~r~~~~~~~~l~~G~~f~~~~~~~~~~~~~~g~~ff~~~~~~~~~~-~~i 414 (627)
....++||.|+.+|++|.+++.+|||.+...|+++.+++|+++|++||+++++..++++|.|++||.+.++.+.+. .++
T Consensus 330 ~~~~~s~~~q~~~L~~R~~~~~~R~~~~~~~r~~~~~~~~~~lg~~~~~~~~~~~~~~~~~g~~~~~~~~~~f~~~~~~i 409 (613)
T KOG0061|consen 330 IGTSPSWWTQFKILLKRSLKNIRRDPSLLLLRLIQSLVTGLLLGLLYLNLGNDAKGIQNRLGLFFFILSFMTFLSMFGAV 409 (613)
T ss_pred cccCCcHHHHHHHHHHHHhHHHhhcHHHHHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 1126899999999999999999999999999999999999999999999999999999999999999998866554 579
Q ss_pred hhHHHhhHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHH
Q 006897 415 PIYLQERRVLMKEASREAYRISSYLIANTIVFLPFLFVVSLLFAIPVYWIVGLNPSIEAFVFFIFVVWLIVLMASSLVLF 494 (627)
Q Consensus 415 ~~~~~er~v~~rE~~~~~Y~~~~y~la~~l~~lp~~~~~~~~f~~i~Y~~~gl~~~~~~f~~f~~~~~l~~~~~~s~~~~ 494 (627)
+.|++||++|.||+.+|+|+.++||+|++++++|+.++.+++|.+|+|||+|++++..+|++|++++++..++++++|++
T Consensus 410 ~~f~~e~~~f~rE~~~~~Y~~s~y~la~~l~~lP~~~i~~~if~~i~Y~m~gl~~~~~~f~~~~l~~~~~~~~a~s~~~~ 489 (613)
T KOG0061|consen 410 PVFPQERPIFLRETSSGLYRLSSYYLAKTLAELPFLLVLSIIFSSIVYWMVGLNPGLSRFLYFLLIILLSSLVAESLGLF 489 (613)
T ss_pred HHhHHHHHHHHHHHhcCchhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHHHHHhhccccCCCCCcchhhhhhhhchhHHHHHHHHHHHhCCCCccccccccCCCCCCCC
Q 006897 495 LSAISPDFISGNSLICTVLGAFFLFSGYFIPKEYIPKYWIFMYYISLYRYPLDSLLTNEYWSARGECFSWQKYNNVDGDH 574 (627)
Q Consensus 495 i~~~~~~~~~a~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~W~~yiSp~~Y~~~~l~~nef~~~~~~C~~~~~~~~~~~~~ 574 (627)
++++.||...|+++.++++++|++|+||+++.++||.||+|++|+|+++|++|++++|||.+....|.....
T Consensus 490 i~~~~~~~~~a~~~~~~~~~~f~l~~G~fi~~~~ip~~~~w~~~~S~~ry~~e~l~~n~~~~~~~~~~~~~~-------- 561 (613)
T KOG0061|consen 490 ISAIVPNLSLATSLGPVLLLPFLLFGGFFINFDSIPKYFRWISYLSYFRYAFEALLINQFSGGSSRCFLSGN-------- 561 (613)
T ss_pred HHHhccchhheeehHHHHHHHHHHHhhhhcCcccccHHHHHHHHHhHHHHHHHHHHHHHhhccccccccCcC--------
Confidence 999999999999999999999999999999999999999999999999999999999999985556764321
Q ss_pred CcccccchHHHHhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhhccccCC
Q 006897 575 FSKCLLTGNDVLKSRGLEKDTRWVNVGVMLAFFLFYRVLCWIILSRRASKTTT 627 (627)
Q Consensus 575 ~~~c~~~G~~~L~~~~~~~~~~w~~~~il~~~~~~~~~l~~~~L~~~~~~~~~ 627 (627)
..|..+|.++++.++++..+.|.|+.++++++++|++++|++|+++.+++++
T Consensus 562 -~~~~~~~~~~l~~~~~~~~~~~~~l~~l~~~~~~~~il~y~~L~~~~~~~~~ 613 (613)
T KOG0061|consen 562 -LCCESTGEDVLKQLGFEDSSFWLDLLVLLAFIVFFRVLGYLALRFRVKRKRR 613 (613)
T ss_pred -CcccccHHHHHHhcCCcccccchhHHHHHHHHHHHHHHHHHHHHhhccccCC
Confidence 4688999999999999999999999999999999999999999999988763
|
|
| >TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-92 Score=800.49 Aligned_cols=535 Identities=27% Similarity=0.469 Sum_probs=464.2
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCccCCChhhhcccEEEEccCCCCCCCC
Q 006897 82 VPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKKPAQLRKICGFVAQEDNLLPLL 161 (627)
Q Consensus 82 ~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~~~~~~~~r~~ig~v~Q~~~l~~~l 161 (627)
+++.+|+|+|+++++||++||+|||||||||||++|+|+.++.....|+|.+||+++ +...+++.+|||+|++.+++.+
T Consensus 36 ~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~-~~~~~~~~i~yv~Q~~~~~~~l 114 (617)
T TIGR00955 36 PRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPI-DAKEMRAISAYVQQDDLFIPTL 114 (617)
T ss_pred CccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEEC-CHHHHhhhceeeccccccCccC
Confidence 457799999999999999999999999999999999999877532359999999985 3456788999999999999999
Q ss_pred CHHHHHHHHHHhcCCC-CCHHHHHHHHHHHHHHcCCccccCC----------cCCccccC------------------CC
Q 006897 162 TVKETLMFSANFRLKG-MSHKEKEDRVESLMDELGLTHVAGS----------FVGDEENR------------------GI 212 (627)
Q Consensus 162 TV~e~l~~~~~~~~~~-~~~~~~~~~v~~~l~~lgL~~~~~~----------~~gGe~qr------------------Pt 212 (627)
||+|||.|++.++.+. .++++.+++++++++.+||.+++|+ ++|||||| ||
T Consensus 115 TV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEPt 194 (617)
T TIGR00955 115 TVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPT 194 (617)
T ss_pred cHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCCC
Confidence 9999999998776543 3566778889999999999876554 55899998 99
Q ss_pred CCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeCCHHHHHHHHHhcCCCCCCCCChHH
Q 006897 213 SGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGSLELLEETINNLGYQIPTQLNAIE 292 (627)
Q Consensus 213 sgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~~~~~~~g~~~p~~~~~~d 292 (627)
+|||+.++.++++.|+++++ .|+|||+++||++.++.++||++++|++|++++.|+++++.++|.+.|++||.+.||+|
T Consensus 195 sgLD~~~~~~l~~~L~~l~~-~g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad 273 (617)
T TIGR00955 195 SGLDSFMAYSVVQVLKGLAQ-KGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAVPFFSDLGHPCPENYNPAD 273 (617)
T ss_pred cchhHHHHHHHHHHHHHHHh-CCCEEEEEeCCCCHHHHHHhceEEEeeCCeEEEECCHHHHHHHHHHcCCCCCCCCChHH
Confidence 99999999999999999986 49999999999986789999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCcccccCCCCCCcch-hhh---ccCCc----ccc-c-------ccCCCcccccccccHHHHHHHHHHHHHHH
Q 006897 293 FAMEIMHPLEDSYSNNNNFLPSV-EDA---EQFPD----LRC-E-------KVGGVEHQQHAFFLILYEIMVLCSRFWKI 356 (627)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~~~~----~~~-~-------~~~~~~~~~~~~~~~~~q~~~l~~R~~~~ 356 (627)
++++++................. +.. +...+ ... + ..........+..+++.|+.+|++|+++.
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~R~~~~ 353 (617)
T TIGR00955 274 FYVQVLAVIPGSENESRERIEKICDSFAVSDIGRDMLVNTNLWSGKAGGLVKDSENMEGIGYNASWWTQFYALLKRSWLS 353 (617)
T ss_pred HHHHHhhcCcccccchHHHHHHHHHHHhcchhhHHHHHHhhhhhccccccccccccccccccCCCHHHHHHHHHHHHHHH
Confidence 99999764332111100000000 000 00000 000 0 00000112345688999999999999999
Q ss_pred HhcCHHHHHHHHHHHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHHHHHHHHH-HHHHhhHHHhhHHHHHHhcCCCCCh
Q 006897 357 IYRTKQLFLARTMQALVGGFGLGSVYVRVRKDEAGVAERLGLFAFSLSFLLSST-VEALPIYLQERRVLMKEASREAYRI 435 (627)
Q Consensus 357 ~~Rd~~~~~~r~~~~~~~~l~~G~~f~~~~~~~~~~~~~~g~~ff~~~~~~~~~-~~~i~~~~~er~v~~rE~~~~~Y~~ 435 (627)
.+|||.++..|+++.+++|+++|++||+++.++.++++|.|++|+++.++.+.+ ...++.|++||++|+||+.+|+|++
T Consensus 354 ~~R~~~~~~~~~~~~i~~~li~G~~f~~~~~~~~~~~~~~g~lf~~~~~~~f~~~~~~~~~f~~er~v~~rE~~~~~Y~~ 433 (617)
T TIGR00955 354 VLRDPLLLKVRLIQTMMTAILIGLIYLGQGLTQKGVQNINGALFLFLTNMTFQNVFPVINVFTAELPVFLRETRSGLYRV 433 (617)
T ss_pred HhcCHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccCH
Confidence 999999999999999999999999999999999999999999999988777764 5778999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 006897 436 SSYLIANTIVFLPFLFVVSLLFAIPVYWIVGLNPSIEAFVFFIFVVWLIVLMASSLVLFLSAISPDFISGNSLICTVLGA 515 (627)
Q Consensus 436 ~~y~la~~l~~lp~~~~~~~~f~~i~Y~~~gl~~~~~~f~~f~~~~~l~~~~~~s~~~~i~~~~~~~~~a~~~~~~~~~~ 515 (627)
++|++|++++++|+.++.+++|++|+|||+|+++++.+|+.|+++++++.++++++|+++++++||..+|+.++++++++
T Consensus 434 ~~y~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~~~f~~f~l~~~l~~~~~~s~~~~i~~~~~~~~~a~~~~~~~~~~ 513 (617)
T TIGR00955 434 SAYFLAKTIAELPLFIILPALFTSITYWMIGLRSGATHFLTFLFLVTLVANVATSFGYLISCAFSSTSMALTVGPPFVIP 513 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhheeccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhccccCCCCCcchhhhhhhhchhHHHHHHHHHHHhCCCCc-cccccccCCCCCCCCCcccccchHHHHhhcCCCCC
Q 006897 516 FFLFSGYFIPKEYIPKYWIFMYYISLYRYPLDSLLTNEYWSARG-ECFSWQKYNNVDGDHFSKCLLTGNDVLKSRGLEKD 594 (627)
Q Consensus 516 ~~lf~Gf~i~~~~ip~~~~W~~yiSp~~Y~~~~l~~nef~~~~~-~C~~~~~~~~~~~~~~~~c~~~G~~~L~~~~~~~~ 594 (627)
+++|+||+++.++||+||+|++|+||++|++++++.|||.+..+ +|.+.+. ...|+.+|+++|+.+|++.+
T Consensus 514 ~~lf~G~~i~~~~ip~~~~W~~~isp~~ya~~al~~nef~~~~~~~c~~~~~--------~~~c~~~g~~~l~~~g~~~~ 585 (617)
T TIGR00955 514 FLLFGGFFINSDSIPVYFKWLSYLSWFRYGNEGLLINQWSDVDNIECTSANT--------TGPCPSSGEVILETLSFRNA 585 (617)
T ss_pred HHHHhhcccChhhccHHHHHHHHcCHHHHHHHHHHHHHhCCCccccccCcCc--------CCCCCcChHHHHHhcCCCcc
Confidence 99999999999999999999999999999999999999998765 6854211 14588899999999999999
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHhhhccccC
Q 006897 595 TRWVNVGVMLAFFLFYRVLCWIILSRRASKTT 626 (627)
Q Consensus 595 ~~w~~~~il~~~~~~~~~l~~~~L~~~~~~~~ 626 (627)
+.|.|++++++++++|++++|++|+++.+++|
T Consensus 586 ~~~~~~~il~~~~~~~~~l~~~~L~~~~~~~~ 617 (617)
T TIGR00955 586 DLYLDLIGLVILIFFFRLLAYFALRIRIRRKR 617 (617)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 99999999999999999999999999988765
|
|
| >PLN03211 ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-91 Score=792.02 Aligned_cols=550 Identities=27% Similarity=0.429 Sum_probs=449.4
Q ss_pred cceEEEEeEEEEEccCccc-----cccc---c------cCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHc
Q 006897 54 TCKVTVRNLSYAIQPNTSI-----LSHL---L------HEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISG 119 (627)
Q Consensus 54 ~~~l~~~nls~~y~~~~~~-----~~~~---~------~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~G 119 (627)
+..+++.|++|+....+.. ...+ . .+.-+++++|+|+|+++++||++||+||||||||||||+|+|
T Consensus 37 ~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG 116 (659)
T PLN03211 37 PITLKFMDVCYRVKFENMKNKGSNIKRILGHKPKISDETRQIQERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAG 116 (659)
T ss_pred ceEEEEEeEEEEEccCCCcccccccccccccccccccccccCCCCeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhC
Confidence 4578899999887533200 0000 0 001124679999999999999999999999999999999999
Q ss_pred CCCCCCCccceEEECCccCCChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHHHcCCcc
Q 006897 120 RVRDQDFDPRSITVNCHQIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLK-GMSHKEKEDRVESLMDELGLTH 198 (627)
Q Consensus 120 l~~~~~~~~G~i~i~g~~~~~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~-~~~~~~~~~~v~~~l~~lgL~~ 198 (627)
+.+|+. .+|+|.+||+++. ...++++|||+|++.+++.+||+||+.+++.++.+ ..++++.+++++++++.+||++
T Consensus 117 ~~~~~~-~sG~I~inG~~~~--~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~ 193 (659)
T PLN03211 117 RIQGNN-FTGTILANNRKPT--KQILKRTGFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTK 193 (659)
T ss_pred CCCCCc-eeEEEEECCEECc--hhhccceEEECcccccCCcCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChh
Confidence 998753 2499999998853 23456799999999999999999999998766543 2345566788999999999987
Q ss_pred ccCC---------cCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHH
Q 006897 199 VAGS---------FVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQ 251 (627)
Q Consensus 199 ~~~~---------~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~ 251 (627)
++++ ++|||||| ||+|||+.++.++++.|+++++ +|+|||+++||++.++.+
T Consensus 194 ~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPtsgLD~~~~~~l~~~L~~l~~-~g~TvI~~sH~~~~~i~~ 272 (659)
T PLN03211 194 CENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQ-KGKTIVTSMHQPSSRVYQ 272 (659)
T ss_pred hcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHH
Confidence 6643 56999999 9999999999999999999986 589999999999855889
Q ss_pred HhhhheeecCCeEEeeCCHHHHHHHHHhcCCCCCCCCChHHHHHHhcCCCcccc--cC-CCCCC-cch-hhhc-------
Q 006897 252 YISKFLILSRGSVVHYGSLELLEETINNLGYQIPTQLNAIEFAMEIMHPLEDSY--SN-NNNFL-PSV-EDAE------- 319 (627)
Q Consensus 252 ~~D~i~vL~~G~iv~~G~~~~~~~~~~~~g~~~p~~~~~~d~~~~~~~~~~~~~--~~-~~~~~-~~~-~~~~------- 319 (627)
+||++++|++|++++.|+++++.++|.+.|++||.+.||+||++++++...+.. .. ..... ... ..++
T Consensus 273 ~~D~iilL~~G~iv~~G~~~~~~~~f~~~G~~~P~~~NpADf~ldv~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 352 (659)
T PLN03211 273 MFDSVLVLSEGRCLFFGKGSDAMAYFESVGFSPSFPMNPADFLLDLANGVCQTDGVSEREKPNVKQSLVASYNTLLAPKV 352 (659)
T ss_pred hhceEEEecCCcEEEECCHHHHHHHHHHCCCCCCCCCCHHHHHHHHcCccccCCCccccccchHHHHHHHHHHhhccHHH
Confidence 999999999999999999999999999999999999999999999987532110 00 00000 000 0000
Q ss_pred --c--CCcc-c-ccc------cCCCc-ccccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhccCC
Q 006897 320 --Q--FPDL-R-CEK------VGGVE-HQQHAFFLILYEIMVLCSRFWKIIYRTKQLFLARTMQALVGGFGLGSVYVRVR 386 (627)
Q Consensus 320 --~--~~~~-~-~~~------~~~~~-~~~~~~~~~~~q~~~l~~R~~~~~~Rd~~~~~~r~~~~~~~~l~~G~~f~~~~ 386 (627)
. .... . .+. ..... ....+.++|++|+.+|++|++++ +||+.+.+.|+++++++|+++|++||+++
T Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~L~~R~~~~-~r~~~~~~~r~~~~i~~~ll~G~lf~~~~ 431 (659)
T PLN03211 353 KAAIEMSHFPQANARFVGSASTKEHRSSDRISISTWFNQFSILLQRSLKE-RKHESFNTLRVFQVIAAALLAGLMWWHSD 431 (659)
T ss_pred HHHHhhhhhhcchhhhhhcccccccccCCCccCCCHHHHHHHHHHHHHHH-HhCcHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 0 0000 0 000 00000 11123468999999999999998 89999999999999999999999999985
Q ss_pred CChhhHHHHHHHHHHHHHHHH-HHHHHHHhhHHHhhHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHhhhhhhccc
Q 006897 387 KDEAGVAERLGLFAFSLSFLL-SSTVEALPIYLQERRVLMKEASREAYRISSYLIANTIVFLPFLFVVSLLFAIPVYWIV 465 (627)
Q Consensus 387 ~~~~~~~~~~g~~ff~~~~~~-~~~~~~i~~~~~er~v~~rE~~~~~Y~~~~y~la~~l~~lp~~~~~~~~f~~i~Y~~~ 465 (627)
+.++++|.|++||+++++. +.++..++.|++||++|+||+.+|+|++++|++|++++|+|+.++.+++|++|+|||+
T Consensus 432 --~~~~~~r~g~lff~~~~~~~~~~~~~~~~f~~er~v~~rE~~~~~Y~~~~Y~la~~l~elP~~~~~~~if~~i~Y~m~ 509 (659)
T PLN03211 432 --FRDVQDRLGLLFFISIFWGVFPSFNSVFVFPQERAIFVKERASGMYTLSSYFMARIVGDLPMELILPTIFLTVTYWMA 509 (659)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhheeEcC
Confidence 6789999999999988755 4567899999999999999999999999999999999999999999999999999999
Q ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhccccCCCCCcchhhhhhhhchhHHH
Q 006897 466 GLNPSIEAFVFFIFVVWLIVLMASSLVLFLSAISPDFISGNSLICTVLGAFFLFSGYFIPKEYIPKYWIFMYYISLYRYP 545 (627)
Q Consensus 466 gl~~~~~~f~~f~~~~~l~~~~~~s~~~~i~~~~~~~~~a~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~W~~yiSp~~Y~ 545 (627)
||++++.+|+.|+++++++.++++++|+++++++||..+|+.+++++++++++|+||+++ +||+||+|++|+||++|+
T Consensus 510 Gl~~~~~~F~~f~li~~l~~~~~~s~g~~i~a~~~~~~~a~~~~~~~~~~~~lfsGf~i~--~ip~~~~W~~ylS~~~y~ 587 (659)
T PLN03211 510 GLKPELGAFLLTLLVLLGYVLVSQGLGLALGAAIMDAKKASTIVTVTMLAFVLTGGFYVH--KLPSCMAWIKYISTTFYS 587 (659)
T ss_pred CCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhhhHh--hchHHHHHHHHhCHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999997 799999999999999999
Q ss_pred HHHHHHHHhCCCC-----ccccccccCCCCCCCCCcccccchHHHHhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHhh
Q 006897 546 LDSLLTNEYWSAR-----GECFSWQKYNNVDGDHFSKCLLTGNDVLKSRGLEKDTRWVNVGVMLAFFLFYRVLCWIILSR 620 (627)
Q Consensus 546 ~~~l~~nef~~~~-----~~C~~~~~~~~~~~~~~~~c~~~G~~~L~~~~~~~~~~w~~~~il~~~~~~~~~l~~~~L~~ 620 (627)
+|+++.|||.+.+ .+|..+.. .....|...++.++. ..+.|.|+++|++++++|++++|++|++
T Consensus 588 ~eal~~nef~~~~~~~~~~~C~~~~~------~~~~~c~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~l~~~~L~~ 656 (659)
T PLN03211 588 YRLLINVQYGEGKRISSLLGCSLPHG------SDRASCKFVEEDVAG-----QISPATSVSVLIFMFVGYRLLAYLALRR 656 (659)
T ss_pred HHHHHHHhcCCccccccccCCCCccc------CCCCCCccchhhhhc-----ccchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999997643 25743211 111347655554443 4568999999999999999999999987
Q ss_pred hcc
Q 006897 621 RAS 623 (627)
Q Consensus 621 ~~~ 623 (627)
+++
T Consensus 657 ~~~ 659 (659)
T PLN03211 657 IKH 659 (659)
T ss_pred ccC
Confidence 653
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-88 Score=820.48 Aligned_cols=542 Identities=22% Similarity=0.359 Sum_probs=459.3
Q ss_pred ccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC-CCccceEEECCccCCC-hhhhcccEEEEccCCCCC
Q 006897 81 KVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQ-DFDPRSITVNCHQIKK-PAQLRKICGFVAQEDNLL 158 (627)
Q Consensus 81 ~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~-~~~~G~i~i~g~~~~~-~~~~r~~ig~v~Q~~~l~ 158 (627)
..++++|+|+|+++++||+++|+||||||||||||+|+|+.++. ...+|+|.+||+++.+ ....|+.++||+|++.++
T Consensus 71 ~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~ 150 (1394)
T TIGR00956 71 TKTFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHF 150 (1394)
T ss_pred CCcceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccC
Confidence 34567999999999999999999999999999999999997421 1134999999988532 234567799999999999
Q ss_pred CCCCHHHHHHHHHHhcCC-----CCCHHHHHHH-HHHHHHHcCCccccCC---------cCCccccC-------------
Q 006897 159 PLLTVKETLMFSANFRLK-----GMSHKEKEDR-VESLMDELGLTHVAGS---------FVGDEENR------------- 210 (627)
Q Consensus 159 ~~lTV~e~l~~~~~~~~~-----~~~~~~~~~~-v~~~l~~lgL~~~~~~---------~~gGe~qr------------- 210 (627)
+.+||+|||.|+++++.+ +.++++..++ ++++++.+||++++++ ++||||||
T Consensus 151 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~v 230 (1394)
T TIGR00956 151 PHLTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKI 230 (1394)
T ss_pred CCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCE
Confidence 999999999998876542 1234444444 5678999999987765 45999999
Q ss_pred -----CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeCCHHHHHHHHHhcCCCCC
Q 006897 211 -----GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGSLELLEETINNLGYQIP 285 (627)
Q Consensus 211 -----PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~~~~~~~g~~~p 285 (627)
||+|||+.++.++++.|++++++.|+|||+++||++.++.++||++++|++|+++++|+++++.++|++.|+.||
T Consensus 231 lllDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~~~~~~~yF~~lG~~~p 310 (1394)
T TIGR00956 231 QCWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPADKAKQYFEKMGFKCP 310 (1394)
T ss_pred EEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeCCeEEEECCHHHHHHHHHHcCCCCC
Confidence 999999999999999999998766899999999986679999999999999999999999999999999999999
Q ss_pred CCCChHHHHHHhcCCCcccccCC-----CCCCcchhh-hccCC-------cc----------------c---c-cccCCC
Q 006897 286 TQLNAIEFAMEIMHPLEDSYSNN-----NNFLPSVED-AEQFP-------DL----------------R---C-EKVGGV 332 (627)
Q Consensus 286 ~~~~~~d~~~~~~~~~~~~~~~~-----~~~~~~~~~-~~~~~-------~~----------------~---~-~~~~~~ 332 (627)
++.|++||++++.+...+..... .....+..+ +...+ +. . . ++....
T Consensus 311 ~~~n~aDfl~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (1394)
T TIGR00956 311 DRQTTADFLTSLTSPAERQIKPGYEKKVPRTPQEFETYWRNSPEYAQLMKEIDEYLDRCSESDTKEAYRESHVAKQSKRT 390 (1394)
T ss_pred CCCChHHHHHhccChhhhhccccccccCCCCHHHHHHHHHcCHHHHHHHHHHHHHhhhccchhhHHHHHHHHHhhhcccc
Confidence 99999999999976543221110 000000000 00000 00 0 0 000001
Q ss_pred cccccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHHHHHHHHHHH
Q 006897 333 EHQQHAFFLILYEIMVLCSRFWKIIYRTKQLFLARTMQALVGGFGLGSVYVRVRKDEAGVAERLGLFAFSLSFLLSSTVE 412 (627)
Q Consensus 333 ~~~~~~~~~~~~q~~~l~~R~~~~~~Rd~~~~~~r~~~~~~~~l~~G~~f~~~~~~~~~~~~~~g~~ff~~~~~~~~~~~ 412 (627)
.....+..++++|+++|++|++++++|||.+++.|+++++++|+++|++||+++++++++++|.|++||++.+.+++++.
T Consensus 391 ~~~~~~~~s~~~Q~~~l~~R~~~~~~Rd~~~~~~r~~~~ii~~li~G~~F~~~~~~~~~~~~r~g~lf~~~~~~~~~~~~ 470 (1394)
T TIGR00956 391 RPSSPYTVSFSMQVKYCLARNFLRMKGNPSFTLFMVFGNIIMALILSSVFYNLPKNTSDFYSRGGALFFAILFNAFSSLL 470 (1394)
T ss_pred cCCCCCcCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHH
Confidence 11234667899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhHHHhhHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHH
Q 006897 413 ALPIYLQERRVLMKEASREAYRISSYLIANTIVFLPFLFVVSLLFAIPVYWIVGLNPSIEAFVFFIFVVWLIVLMASSLV 492 (627)
Q Consensus 413 ~i~~~~~er~v~~rE~~~~~Y~~~~y~la~~l~~lp~~~~~~~~f~~i~Y~~~gl~~~~~~f~~f~~~~~l~~~~~~s~~ 492 (627)
.++.++.||++|+||+.+++|++++|++|++++++|+.++.+++|++|+|||+||++++.+||.|+++++++.+++++++
T Consensus 471 ~i~~~~~eR~i~~re~~~~~Y~~~ay~la~~l~~iP~~~~~~~if~~i~Yfm~gl~~~~~~Ff~f~l~~~l~~~~~~~~~ 550 (1394)
T TIGR00956 471 EIASMYEARPIVEKHRKYALYHPSADAIASIISEIPFKIIESVVFNIILYFMVNFRRTAGRFFFYLLILFICTLAMSHLF 550 (1394)
T ss_pred HHHHHHhcCcceeeeccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhhEEcCCCcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHhhccccCCCCCcchhhhhhhhchhHHHHHHHHHHHhCCCCcccccc-ccCCCCC
Q 006897 493 LFLSAISPDFISGNSLICTVLGAFFLFSGYFIPKEYIPKYWIFMYYISLYRYPLDSLLTNEYWSARGECFSW-QKYNNVD 571 (627)
Q Consensus 493 ~~i~~~~~~~~~a~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~W~~yiSp~~Y~~~~l~~nef~~~~~~C~~~-~~~~~~~ 571 (627)
+++++++||..+|+.+++++++++++|+||+++.++||+||+|++|+||++|++||++.|||++..++|... +.+++.+
T Consensus 551 ~~i~a~~~~~~~A~~~~~~~~~~~~lf~Gf~i~~~~mp~~~~W~~yisp~~yafeal~~nef~~~~~~C~~~~p~g~~y~ 630 (1394)
T TIGR00956 551 RSIGAVTKTLSEAMTPAAILLLALSIYTGFAIPRPSMLGWSKWIYYVNPLAYAFESLMVNEFHGRRFECSQYVPSGGGYD 630 (1394)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHHcccccChhhccHHHHHHHHcCHHHHHHHHHHHhhhcCCcccccccccCCCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999530 1111111
Q ss_pred ------------CCCCcccccchHHHHh-hcCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhhc
Q 006897 572 ------------GDHFSKCLLTGNDVLK-SRGLEKDTRWVNVGVMLAFFLFYRVLCWIILSRRA 622 (627)
Q Consensus 572 ------------~~~~~~c~~~G~~~L~-~~~~~~~~~w~~~~il~~~~~~~~~l~~~~L~~~~ 622 (627)
|...+.|.++|+++|+ .+|++.++.|+|++|+++|+++|+++++++|.+.+
T Consensus 631 ~~~~~~~~C~~~g~~~g~~~~~G~~~L~~~~~~~~~~~w~n~gil~~~~v~f~~~~~l~l~~~~ 694 (1394)
T TIGR00956 631 NLGVTNKVCTVVGAEPGQDYVDGDDYLKLSFQYYNSHKWRNFGIIIGFTVFFFFVYILLTEFNK 694 (1394)
T ss_pred CCCccCccccCCCCcCCcccccHHHHHHhcCCcccchhhHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 1111234679999998 58999999999999999999999999999999876
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-87 Score=811.37 Aligned_cols=558 Identities=22% Similarity=0.369 Sum_probs=467.6
Q ss_pred cceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEE
Q 006897 54 TCKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITV 133 (627)
Q Consensus 54 ~~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i 133 (627)
..+++++||+++|+.+ ++++.+|+|||+++++||++||+||||||||||||+|+|+.++...++|+|.+
T Consensus 757 ~~~l~~~nl~~~~~~~-----------~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i 825 (1394)
T TIGR00956 757 EDIFHWRNLTYEVKIK-----------KEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLV 825 (1394)
T ss_pred CceEEEEeeEEEecCC-----------CCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEE
Confidence 3468999999999422 13467999999999999999999999999999999999998743234599999
Q ss_pred CCccCCChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCC-CCHHHHHHHHHHHHHHcCCccccCC--------cC
Q 006897 134 NCHQIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKG-MSHKEKEDRVESLMDELGLTHVAGS--------FV 204 (627)
Q Consensus 134 ~g~~~~~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~-~~~~~~~~~v~~~l~~lgL~~~~~~--------~~ 204 (627)
||+++. ..+|+.+|||+|++.+++.+||+|||.|++.++.+. .++++.+++++++++.+||++++|+ ++
T Consensus 826 ~G~~~~--~~~~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~~LS 903 (1394)
T TIGR00956 826 NGRPLD--SSFQRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEGLN 903 (1394)
T ss_pred CCEECC--hhhhcceeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCCCCCC
Confidence 999853 357888999999998899999999999988776432 3556677889999999999887764 55
Q ss_pred CccccC-------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCC-eE
Q 006897 205 GDEENR-------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRG-SV 264 (627)
Q Consensus 205 gGe~qr-------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G-~i 264 (627)
|||||| ||+|||+.++..+++.|+++++ .|+|||+++||++.++.+.||++++|++| ++
T Consensus 904 gGqrqRl~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~-~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~i 982 (1394)
T TIGR00956 904 VEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLAD-HGQAILCTIHQPSAILFEEFDRLLLLQKGGQT 982 (1394)
T ss_pred HHHhhHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEecCCCHHHHHhcCEEEEEcCCCEE
Confidence 899998 9999999999999999999986 58999999999996567889999999997 99
Q ss_pred EeeCCH----HHHHHHHHhcCC-CCCCCCChHHHHHHhcCCCcccccCCC-----CCCcchhhh----ccCCcc-c-ccc
Q 006897 265 VHYGSL----ELLEETINNLGY-QIPTQLNAIEFAMEIMHPLEDSYSNNN-----NFLPSVEDA----EQFPDL-R-CEK 328 (627)
Q Consensus 265 v~~G~~----~~~~~~~~~~g~-~~p~~~~~~d~~~~~~~~~~~~~~~~~-----~~~~~~~~~----~~~~~~-~-~~~ 328 (627)
++.|++ +++.++|.+.|+ +||.+.|||||++|++........... ....+..+. +..... . .+.
T Consensus 983 v~~G~~~~~~~~~~~yf~~~G~~~~p~~~NpAd~~ldvi~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~ 1062 (1394)
T TIGR00956 983 VYFGDLGENSHTIINYFEKHGAPKCPEDANPAEWMLEVIGAAPGAHANQDYHEVWRNSSEYQAVKNELDRLEAELSKAED 1062 (1394)
T ss_pred EEECCcccccchHHHHHHhcCCCCCCCCCCHHHHHHHHhhcccccchhccHHHHHhcCHHHHHHHHHHHHhhcccccCcc
Confidence 999987 568899999996 999999999999999764322110000 000000000 000000 0 000
Q ss_pred cCCCcccccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHHHHHHH
Q 006897 329 VGGVEHQQHAFFLILYEIMVLCSRFWKIIYRTKQLFLARTMQALVGGFGLGSVYVRVRKDEAGVAERLGLFAFSLSFLLS 408 (627)
Q Consensus 329 ~~~~~~~~~~~~~~~~q~~~l~~R~~~~~~Rd~~~~~~r~~~~~~~~l~~G~~f~~~~~~~~~~~~~~g~~ff~~~~~~~ 408 (627)
........++++++++|+++|++|+++++||||.++++|+++++++|+++|++||++++++.++++|+|++|+.+.+..+
T Consensus 1063 ~~~~~~~~~~~~s~~~q~~~l~~R~~~~~~R~~~~~~~r~~~~i~~~l~~G~~f~~~~~~~~~i~~~~g~~f~~~~~~~~ 1142 (1394)
T TIGR00956 1063 DNDPDALSKYAASLWYQFKLVLWRTFQQYWRTPDYLYSKFFLTIFAALFIGFTFFKVGTSLQGLQNQMFAVFMATVLFNP 1142 (1394)
T ss_pred ccccccccccCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 00001123567899999999999999999999999999999999999999999999999999999999999988887766
Q ss_pred HHHHHHhhHHHhhHHH-HHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccccHHH-------HHHHHHH
Q 006897 409 STVEALPIYLQERRVL-MKEASREAYRISSYLIANTIVFLPFLFVVSLLFAIPVYWIVGLNPSIEA-------FVFFIFV 480 (627)
Q Consensus 409 ~~~~~i~~~~~er~v~-~rE~~~~~Y~~~~y~la~~l~~lp~~~~~~~~f~~i~Y~~~gl~~~~~~-------f~~f~~~ 480 (627)
...+.+|.|+.||.+| +||+.+|+|++++|++|++++|+|+.++.+++|++|+|||+||++++.. |++|+++
T Consensus 1143 ~~~~~~~~f~~~r~~~~~RE~~s~~Y~~~~y~~a~~l~elP~~~~~~~if~~i~Y~~~Gl~~~~~~~~~~~~~f~~~~~~ 1222 (1394)
T TIGR00956 1143 LIQQYLPPFVAQRDLYEVRERPSRTFSWLAFIAAQITVEIPYNLVAGTIFFFIWYYPVGFYWNASKTGQVHERGVLFWLL 1222 (1394)
T ss_pred HHHHhhhhHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhheeecccccCcccccccccchHHHHHHH
Confidence 6778889999999886 9999999999999999999999999999999999999999999988766 9999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhccccCCCCCcchhhhhhhhchhHHHHHHHHHHHhCCCCcc
Q 006897 481 VWLIVLMASSLVLFLSAISPDFISGNSLICTVLGAFFLFSGYFIPKEYIPKYWIFMYYISLYRYPLDSLLTNEYWSARGE 560 (627)
Q Consensus 481 ~~l~~~~~~s~~~~i~~~~~~~~~a~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~W~~yiSp~~Y~~~~l~~nef~~~~~~ 560 (627)
++++.++++++|+++++++||..+|+.+++++++++++|+||++++++||.||+|++|+||++|++++++.|||.+...+
T Consensus 1223 ~~~~~~~~~s~g~~~~~~~~~~~~a~~~~~~~~~~~~lf~G~~~~~~~ip~~~~w~~~~sp~~y~~~~l~~~~~~~~~~~ 1302 (1394)
T TIGR00956 1223 STMFFLYFSTLGQMVISFNPNADNAAVLASLLFTMCLSFCGVLAPPSRMPGFWIFMYRCSPFTYLVQALLSTGLADVPVT 1302 (1394)
T ss_pred HHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHhccccCChhHCcHHHhHHHhcCHHHHHHHHHHHHHcCCCeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred cccccc----C-CCC------------------C-CC--CCcccc-cchHHHHhhcCCCCCCchHHHHHHHHHHHHHHHH
Q 006897 561 CFSWQK----Y-NNV------------------D-GD--HFSKCL-LTGNDVLKSRGLEKDTRWVNVGVMLAFFLFYRVL 613 (627)
Q Consensus 561 C~~~~~----~-~~~------------------~-~~--~~~~c~-~~G~~~L~~~~~~~~~~w~~~~il~~~~~~~~~l 613 (627)
|.+.+. + ++. + .+ ....|+ .+|+++|+.+|++.+++|+|++|+++|++++ ++
T Consensus 1303 C~~~e~~~f~pp~~~tC~~y~~~~~~~~~G~l~~~~a~~~C~yC~~~~~~~~l~~~~~~~~~~w~~~~i~~~~~~~~-~~ 1381 (1394)
T TIGR00956 1303 CKVKELLTFNPPSGQTCGEYMKPYLENAGGYLLNPNATDSCSFCQYSYTNDFLEPISSKYSGRWRNFGIFIAFIFFN-II 1381 (1394)
T ss_pred cCccccceecCCCCCCHHHHHHHHHhhCCcEeeCCCCCCCCCcCCCCCHHHHHHHcCCcccccccchhhhhHHHHHH-HH
Confidence 865210 0 000 0 11 123355 6999999999999999999999999999998 88
Q ss_pred HHHHHhhhccccC
Q 006897 614 CWIILSRRASKTT 626 (627)
Q Consensus 614 ~~~~L~~~~~~~~ 626 (627)
+++.|+++.|.+|
T Consensus 1382 ~~~~l~~~~r~~k 1394 (1394)
T TIGR00956 1382 ATVFFYWLARVPK 1394 (1394)
T ss_pred HHHhhheEEEcCC
Confidence 8899998876654
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-86 Score=799.30 Aligned_cols=556 Identities=21% Similarity=0.354 Sum_probs=461.0
Q ss_pred ceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEEC
Q 006897 55 CKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVN 134 (627)
Q Consensus 55 ~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~ 134 (627)
..++++||+|.++.+.... . .....+.+++|+|||+++++||++||+||||||||||||+|+|+.++.. .+|+|.+|
T Consensus 866 ~~~~~~~v~y~v~~~~~~~-~-~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~-~~G~I~in 942 (1470)
T PLN03140 866 LAMSFDDVNYFVDMPAEMK-E-QGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY-IEGDIRIS 942 (1470)
T ss_pred ceEEEEEEEEEEccCcccc-c-cccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCc-ccceEEEC
Confidence 4699999999985321100 0 0001134579999999999999999999999999999999999976432 34999999
Q ss_pred CccCCChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCC-CCHHHHHHHHHHHHHHcCCccccCC---------cC
Q 006897 135 CHQIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKG-MSHKEKEDRVESLMDELGLTHVAGS---------FV 204 (627)
Q Consensus 135 g~~~~~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~-~~~~~~~~~v~~~l~~lgL~~~~~~---------~~ 204 (627)
|++. +...+++.+|||+|++.+++.+||+|||.|++.++.+. .++++..++++++++.+||++++++ ++
T Consensus 943 G~~~-~~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LS 1021 (1470)
T PLN03140 943 GFPK-KQETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLS 1021 (1470)
T ss_pred CccC-ChHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcC
Confidence 9874 33456778999999999999999999999988766432 3455667789999999999877655 45
Q ss_pred CccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecC-CeEE
Q 006897 205 GDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSR-GSVV 265 (627)
Q Consensus 205 gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~-G~iv 265 (627)
|||||| ||+|||+.++..+++.|++++++ |+|||+++||++.++.+.||++++|++ |+++
T Consensus 1022 gGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~-g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~~v 1100 (1470)
T PLN03140 1022 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGQVI 1100 (1470)
T ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCHHHHHhCCEEEEEcCCCEEE
Confidence 899998 99999999999999999999864 899999999998667899999999996 8999
Q ss_pred eeCCH----HHHHHHHHhc-CC-CCCCCCChHHHHHHhcCCCcccccCCCCCCcch------hhhcc-CCcccccc--cC
Q 006897 266 HYGSL----ELLEETINNL-GY-QIPTQLNAIEFAMEIMHPLEDSYSNNNNFLPSV------EDAEQ-FPDLRCEK--VG 330 (627)
Q Consensus 266 ~~G~~----~~~~~~~~~~-g~-~~p~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~------~~~~~-~~~~~~~~--~~ 330 (627)
+.|++ +++.+||++. |+ .||...|||||+++++.......... ...... .+... ...+.... ..
T Consensus 1101 ~~G~~~~~~~~~~~yF~~~~g~~~~p~~~NPAd~~l~v~~~~~~~~~~~-d~~~~~~~s~~~~~~~~~~~~~~~~~~~~~ 1179 (1470)
T PLN03140 1101 YSGPLGRNSHKIIEYFEAIPGVPKIKEKYNPATWMLEVSSLAAEVKLGI-DFAEHYKSSSLYQRNKALVKELSTPPPGAS 1179 (1470)
T ss_pred EECCcccccccHHHHHHhcCCCCCCCCCCCchhhhhhhhcccccccccc-hHHHHHhccHHHHHHHHHHHHhccCCCCcc
Confidence 99996 5789999997 66 49999999999999875422111000 000000 00000 00000000 00
Q ss_pred CCcccccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhccCCCCh---hhHHHHHHHHHHHHHHHH
Q 006897 331 GVEHQQHAFFLILYEIMVLCSRFWKIIYRTKQLFLARTMQALVGGFGLGSVYVRVRKDE---AGVAERLGLFAFSLSFLL 407 (627)
Q Consensus 331 ~~~~~~~~~~~~~~q~~~l~~R~~~~~~Rd~~~~~~r~~~~~~~~l~~G~~f~~~~~~~---~~~~~~~g~~ff~~~~~~ 407 (627)
......++.+++++|+.+|++|+++.+||||.++++|+++.+++|+++|++||++++++ .+++++.|++|+++.++.
T Consensus 1180 ~~~~~~~~~~s~~~Q~~~l~~R~~~~~~R~p~~~~~r~~~~i~~al~~G~~f~~~~~~~~~~~~~~~~~g~l~~~~~~~~ 1259 (1470)
T PLN03140 1180 DLYFATQYSQSTWGQFKSCLWKQWWTYWRSPDYNLVRFFFTLAAALMVGTIFWKVGTKRSNANDLTMVIGAMYAAVLFVG 1259 (1470)
T ss_pred ccccCccccCCHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHhhCCCCCcchhhhHHHHHHHHHHHHHHHH
Confidence 01112456789999999999999999999999999999999999999999999999865 567889999999888876
Q ss_pred HHH-HHHHhhHHHhhHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccccHHHHHHHHHHHHHHHH
Q 006897 408 SST-VEALPIYLQERRVLMKEASREAYRISSYLIANTIVFLPFLFVVSLLFAIPVYWIVGLNPSIEAFVFFIFVVWLIVL 486 (627)
Q Consensus 408 ~~~-~~~i~~~~~er~v~~rE~~~~~Y~~~~y~la~~l~~lp~~~~~~~~f~~i~Y~~~gl~~~~~~f~~f~~~~~l~~~ 486 (627)
+.. .+.+|.|..||.+|+||+++|+|++++|++|++++|+|+.++.+++|++|+|||+||++++..||+|+++++++.+
T Consensus 1260 ~~~~~~~~p~~~~eR~vf~REr~~~~Y~~~~y~la~~l~eiP~~~~~~~if~~i~Y~m~Gl~~~~~~f~~~~~~~~l~~~ 1339 (1470)
T PLN03140 1260 INNCSTVQPMVAVERTVFYRERAAGMYSALPYAIAQVVCEIPYVLIQTTYYTLIVYAMVAFEWTAAKFFWFYFISFFSFL 1339 (1470)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHH
Confidence 644 4667899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhccccCCCCCcchhhhhhhhchhHHHHHHHHHHHhCCCCcccccccc
Q 006897 487 MASSLVLFLSAISPDFISGNSLICTVLGAFFLFSGYFIPKEYIPKYWIFMYYISLYRYPLDSLLTNEYWSARGECFSWQK 566 (627)
Q Consensus 487 ~~~s~~~~i~~~~~~~~~a~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~W~~yiSp~~Y~~~~l~~nef~~~~~~C~~~~~ 566 (627)
+++++|+++++++||..+|+.+++++++++++|+||++|+++||+||+|++|+||++|++++++.|||.+.+.+|..+..
T Consensus 1340 ~~~~~g~~~~a~~p~~~~A~~~~~~~~~~~~lf~Gf~i~~~~iP~~~~W~~~isp~~y~~~~l~~~~f~~~~~~~~~~~~ 1419 (1470)
T PLN03140 1340 YFTYYGMMTVSLTPNQQVAAIFAAAFYGLFNLFSGFFIPRPKIPKWWVWYYWICPVAWTVYGLIVSQYGDVEDTIKVPGG 1419 (1470)
T ss_pred HHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHeeeccChHHCchHHHHHHHcCHHHHHHhhhHHHHhCCCCCcccCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998766632210
Q ss_pred CCCCCCCCCcccccchHHH-HhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhhccccC
Q 006897 567 YNNVDGDHFSKCLLTGNDV-LKSRGLEKDTRWVNVGVMLAFFLFYRVLCWIILSRRASKTT 626 (627)
Q Consensus 567 ~~~~~~~~~~~c~~~G~~~-L~~~~~~~~~~w~~~~il~~~~~~~~~l~~~~L~~~~~~~~ 626 (627)
....+|+++ ++++|+++++.|+|++|+++|+++|++++++++++.++++|
T Consensus 1420 ----------~~~~~~~~~~~~~~g~~~~~~~~~~~il~~~~~~f~~~~~~~~~~~~~q~r 1470 (1470)
T PLN03140 1420 ----------APDPTIKWYIQDHYGYDPDFMGPVAAVLVGFTVFFAFIFAFCIRTLNFQTR 1470 (1470)
T ss_pred ----------CCCCcHHHHHHHhcCcCcccccchhhhHHHHHHHHHHHHHHHHHHhhcccC
Confidence 011356777 57899999999999999999999999999999999988775
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-86 Score=799.65 Aligned_cols=530 Identities=22% Similarity=0.364 Sum_probs=447.5
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCccCCChhhhcccEEEEccCCCCCCCC
Q 006897 82 VPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKKPAQLRKICGFVAQEDNLLPLL 161 (627)
Q Consensus 82 ~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~~~~~~~~r~~ig~v~Q~~~l~~~l 161 (627)
.++.+|+|+|+.+++||+++|+||||||||||||+|+|+++|+...+|+|.+||+++.+ ...++.++||+|++.+++.+
T Consensus 176 ~~~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~-~~~~~~i~yv~Q~d~~~~~l 254 (1470)
T PLN03140 176 TKLTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNE-FVPRKTSAYISQNDVHVGVM 254 (1470)
T ss_pred ccceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechh-hcccceeEEecccccCCCcC
Confidence 45779999999999999999999999999999999999998752235999999988532 22367899999999999999
Q ss_pred CHHHHHHHHHHhcCCC--------CCHHHH------------------------HHHHHHHHHHcCCccccCC-------
Q 006897 162 TVKETLMFSANFRLKG--------MSHKEK------------------------EDRVESLMDELGLTHVAGS------- 202 (627)
Q Consensus 162 TV~e~l~~~~~~~~~~--------~~~~~~------------------------~~~v~~~l~~lgL~~~~~~------- 202 (627)
||+|||.|+++++..+ .+++++ +..++++++.+||++++++
T Consensus 255 TV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~ 334 (1470)
T PLN03140 255 TVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMI 334 (1470)
T ss_pred cHHHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccc
Confidence 9999999988764211 111111 1235789999999987653
Q ss_pred --cCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCC
Q 006897 203 --FVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRG 262 (627)
Q Consensus 203 --~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G 262 (627)
++|||||| ||+|||+.++.++++.|++++++.|+|+|+++||+..++.++||+|++|++|
T Consensus 335 rglSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~G 414 (1470)
T PLN03140 335 RGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEG 414 (1470)
T ss_pred cCCCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeCc
Confidence 45999999 9999999999999999999987678999999999876799999999999999
Q ss_pred eEEeeCCHHHHHHHHHhcCCCCCCCCChHHHHHHhcCCCccccc----CCC---CCCcchhh-hccCC---cc-------
Q 006897 263 SVVHYGSLELLEETINNLGYQIPTQLNAIEFAMEIMHPLEDSYS----NNN---NFLPSVED-AEQFP---DL------- 324 (627)
Q Consensus 263 ~iv~~G~~~~~~~~~~~~g~~~p~~~~~~d~~~~~~~~~~~~~~----~~~---~~~~~~~~-~~~~~---~~------- 324 (627)
+++++|+++++.++|++.|+.||++.|++||++++.+..++... ..+ ....+..+ +.... .+
T Consensus 415 ~ivy~G~~~~~~~yF~~lGf~cP~~~n~ADFl~~v~s~~~~~~~~~~~~~p~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 494 (1470)
T PLN03140 415 QIVYQGPRDHILEFFESCGFKCPERKGTADFLQEVTSKKDQEQYWADRNKPYRYISVSEFAERFKSFHVGMQLENELSVP 494 (1470)
T ss_pred eEEEeCCHHHHHHHHHHcCCCCCCCCChHHHHHHhcCchhhhhhhhccCCccccCCHHHHHHHHHhcHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999876443211 000 00001110 00000 00
Q ss_pred -cccc-cCCCcccccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhccCCCCh---hhHHHHHHHH
Q 006897 325 -RCEK-VGGVEHQQHAFFLILYEIMVLCSRFWKIIYRTKQLFLARTMQALVGGFGLGSVYVRVRKDE---AGVAERLGLF 399 (627)
Q Consensus 325 -~~~~-~~~~~~~~~~~~~~~~q~~~l~~R~~~~~~Rd~~~~~~r~~~~~~~~l~~G~~f~~~~~~~---~~~~~~~g~~ 399 (627)
..+. .........+..+++.|+..+++|+++.++||+..++.|+++.+++|+++|++||+++.++ .+.+.+.|++
T Consensus 495 ~~~~~~~~~~~~~~~y~~s~~~q~~~~~~R~~~~~~Rd~~~~~~r~~~~ii~ali~GsvF~~~~~~~~~~~~~~~~~g~l 574 (1470)
T PLN03140 495 FDKSQSHKAALVFSKYSVPKMELLKACWDKEWLLMKRNAFVYVFKTVQIIIVAAIASTVFLRTEMHTRNEEDGALYIGAL 574 (1470)
T ss_pred hhhhhcccccccCCCCcCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHH
Confidence 0000 0001122346788999999999999999999999999999999999999999999997543 3466788999
Q ss_pred HHHHHHHHHHHHHHHhhHHHhhHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccccHHHHHHHHH
Q 006897 400 AFSLSFLLSSTVEALPIYLQERRVLMKEASREAYRISSYLIANTIVFLPFLFVVSLLFAIPVYWIVGLNPSIEAFVFFIF 479 (627)
Q Consensus 400 ff~~~~~~~~~~~~i~~~~~er~v~~rE~~~~~Y~~~~y~la~~l~~lp~~~~~~~~f~~i~Y~~~gl~~~~~~f~~f~~ 479 (627)
||++++.++.++.+++.++.||++|+||+..++|++++|++|++++++|+.++.+++|++|+|||+||++++.+||.|++
T Consensus 575 ff~~l~~~~~~~~~l~~~~~~r~vf~ker~~~~Y~~~ay~la~~l~~iP~~~i~~~if~~I~Y~m~Gl~~~~~~Ff~f~l 654 (1470)
T PLN03140 575 LFSMIINMFNGFAELALMIQRLPVFYKQRDLLFHPPWTFTLPTFLLGIPISIIESVVWVVITYYSIGFAPEASRFFKQLL 654 (1470)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchhHHhhhccCcCHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCchhHHHHHHH
Confidence 99999988999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhccccCCCCCcchhhhhhhhchhHHHHHHHHHHHhCCCCc
Q 006897 480 VVWLIVLMASSLVLFLSAISPDFISGNSLICTVLGAFFLFSGYFIPKEYIPKYWIFMYYISLYRYPLDSLLTNEYWSARG 559 (627)
Q Consensus 480 ~~~l~~~~~~s~~~~i~~~~~~~~~a~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~W~~yiSp~~Y~~~~l~~nef~~~~~ 559 (627)
+++++.++++++++++++++|+..+|+++++++++++++|+||+++.++||+||+|++|+||++||++|++.|||.+..+
T Consensus 655 ~~~l~~~~~~~l~~~i~a~~~~~~~A~~~~~~~~l~~~lf~Gf~i~~~~ip~w~~W~~yisp~~Ya~eal~~NEf~~~~~ 734 (1470)
T PLN03140 655 LVFLIQQMAAGIFRLIASVCRTMIIANTGGALVLLLVFLLGGFILPKGEIPNWWEWAYWVSPLSYGFNALAVNEMFAPRW 734 (1470)
T ss_pred HHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHccceechHhCchHHHHHHHhCHHHHHHHHHHHHhccCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999987653
Q ss_pred cccccccCCCCCCCCCcccccchHHHHhhcCCCCCC--chHHHHHHHHHHHHHHHHHHHHHhhhc
Q 006897 560 ECFSWQKYNNVDGDHFSKCLLTGNDVLKSRGLEKDT--RWVNVGVMLAFFLFYRVLCWIILSRRA 622 (627)
Q Consensus 560 ~C~~~~~~~~~~~~~~~~c~~~G~~~L~~~~~~~~~--~w~~~~il~~~~~~~~~l~~~~L~~~~ 622 (627)
.|..+. ..+...|+++|+.+|+..++ .|+|+++|++|+++|+++++++|++.+
T Consensus 735 ~~~~~~----------~~~~~~G~~~L~~~g~~~~~~~~w~~~~iL~~~~v~f~~l~~l~L~~~~ 789 (1470)
T PLN03140 735 MNKMAS----------DNSTRLGTAVLNIFDVFTDKNWYWIGVGALLGFTILFNVLFTLALTYLN 789 (1470)
T ss_pred cCcccC----------CCCcccHHHHHHhcCcCccccchhhhHHHHHHHHHHHHHHHHHHHHhcC
Confidence 321100 12457899999999998665 588899999999999999999999876
|
|
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-79 Score=701.33 Aligned_cols=495 Identities=25% Similarity=0.435 Sum_probs=425.6
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
...++|+.+..+. +++.+++|+|||.-++||.++||||+|||||||||++|+|+..... .+|+|.++|
T Consensus 787 V~~w~dl~~~~~~-----------qG~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~-I~Gdi~i~G 854 (1391)
T KOG0065|consen 787 VFYWVDLPYEMPI-----------QGGTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGY-IEGDILISG 854 (1391)
T ss_pred eEEEEeCCccccc-----------cccceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccce-EEeEEEECC
Confidence 4566666665532 2366789999999999999999999999999999999999976543 459999999
Q ss_pred ccCCChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCC-CCHHHHHHHHHHHHHHcCCccccCCcCC--------c
Q 006897 136 HQIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKG-MSHKEKEDRVESLMDELGLTHVAGSFVG--------D 206 (627)
Q Consensus 136 ~~~~~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~-~~~~~~~~~v~~~l~~lgL~~~~~~~~g--------G 206 (627)
.+ .+.+.++|.+|||.|+|.+.+.+||+|.|.|+|.+|++. .+.+++.+.|+++++.++|+++++.++| +
T Consensus 855 ~p-~~q~tF~R~~GYvqQ~DiH~~~~TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G~GLs~e 933 (1391)
T KOG0065|consen 855 FP-KDQETFARVSGYVEQQDIHSPELTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYADALVGLPGSGLSTE 933 (1391)
T ss_pred ee-CchhhhccccceeecccccCcccchHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhhhccCCCCCCCHH
Confidence 98 444789999999999999999999999999999999865 4777788999999999999999998884 3
Q ss_pred cccC-------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecC-CeEEe
Q 006897 207 EENR-------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSR-GSVVH 266 (627)
Q Consensus 207 e~qr-------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~-G~iv~ 266 (627)
||+| ||||||+.++..+++.+|++++ .|+||+|++|||+.++++.+|++++|++ |+.+|
T Consensus 934 QRKrLTIgVELvA~P~~ilFLDEPTSGLDsqaA~~i~~~lrkla~-tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY 1012 (1391)
T KOG0065|consen 934 QRKRLTIGVELVANPSSILFLDEPTSGLDSQAAAIVMRFLRKLAD-TGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVY 1012 (1391)
T ss_pred HhceeeEEEEEecCCceeEEecCCCCCccHHHHHHHHHHHHHHHh-cCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEE
Confidence 6666 9999999999999999999997 6999999999999999999999999986 79999
Q ss_pred eCCHH----HHHHHHHhcC-CCCCCCCChHHHHHHhcCCCcccccCCC-----CCCcchhhhcc-CCcccc---cccCCC
Q 006897 267 YGSLE----LLEETINNLG-YQIPTQLNAIEFAMEIMHPLEDSYSNNN-----NFLPSVEDAEQ-FPDLRC---EKVGGV 332 (627)
Q Consensus 267 ~G~~~----~~~~~~~~~g-~~~p~~~~~~d~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~-~~~~~~---~~~~~~ 332 (627)
.|+.. .+.+||++.+ .+||...|||||++|++........+.. ....+..+.++ .+++.. ......
T Consensus 1013 ~G~lG~~s~~li~YFes~~~~~~~~~~NPA~~mLevi~~~~~~~~~~D~a~~w~~S~e~k~~~e~v~~l~~~~~~~~~~~ 1092 (1391)
T KOG0065|consen 1013 FGPLGENSSKLIEYFESIGGVKCISDENPAEWMLEVIGAGAEASLSVDFAEIWKNSEEYKRNKELVKELSQPPPGFSTDL 1092 (1391)
T ss_pred ecCcccccHHHHHHHHhcCCccCCCCCChHHHHHhhcccccccccCccHHHHHhccHHHHHHHHHHHHHhcCCccCCccc
Confidence 99874 4678999875 8999999999999999865433211100 00000000000 000000 011112
Q ss_pred cccccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHHHHHHHHHHH
Q 006897 333 EHQQHAFFLILYEIMVLCSRFWKIIYRTKQLFLARTMQALVGGFGLGSVYVRVRKDEAGVAERLGLFAFSLSFLLSSTVE 412 (627)
Q Consensus 333 ~~~~~~~~~~~~q~~~l~~R~~~~~~Rd~~~~~~r~~~~~~~~l~~G~~f~~~~~~~~~~~~~~g~~ff~~~~~~~~~~~ 412 (627)
....++++++|.|++.+++|++..+||+|.++++|++..++.||++|+.||+++.+..+++|.+|++|.++++......+
T Consensus 1093 ~~~~~fa~s~~~Q~k~~l~Rq~~syWRsp~y~~ar~~~~i~~gl~iGf~F~~~g~~~q~lqn~m~a~yma~v~~~~~~~~ 1172 (1391)
T KOG0065|consen 1093 EFKTRFAQSLWYQFKLCLWRQFLSYWRSPDYLMARFALTIVAGLFIGFTFWKVGHNVQGLQNAMGAAYMATVFSGPNNNQ 1172 (1391)
T ss_pred ccccccchhHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhheeeeeecCCcHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 24556889999999999999999999999999999999999999999999999999999999999999998877666555
Q ss_pred HH-hhHHHhhHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccccHHHHHHHHHHHHHHHHHHHHH
Q 006897 413 AL-PIYLQERRVLMKEASREAYRISSYLIANTIVFLPFLFVVSLLFAIPVYWIVGLNPSIEAFVFFIFVVWLIVLMASSL 491 (627)
Q Consensus 413 ~i-~~~~~er~v~~rE~~~~~Y~~~~y~la~~l~~lp~~~~~~~~f~~i~Y~~~gl~~~~~~f~~f~~~~~l~~~~~~s~ 491 (627)
.. +.+..||.+++||+++|+|++.+|++|++++|+|+.++++++|.+|+|+++|+..++.+|++|++.++++.++..++
T Consensus 1173 ~~~~~v~~e~~y~~RE~~s~mYs~~~~~~aq~~vEiP~~l~~stl~~~~~Y~~iGF~~~a~~~~~f~~~~~~f~lYf~~~ 1252 (1391)
T KOG0065|consen 1173 LQQPAVATERLYEYRERASNMYSWTPFALAQVLVEIPYNLLQSTLFFLITYYPIGFYWTASKFFWFLLFMFIFFLYFTTL 1252 (1391)
T ss_pred hhhhHHhhhhhheeeecccCcccHHHHHHHHHHHHHHHHHHHHHHhheeeeeeccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 44 45557889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhhccccCCCCCcchhhhhhhhchhHHHHHHHHHHHhCCCCcccccc
Q 006897 492 VLFLSAISPDFISGNSLICTVLGAFFLFSGYFIPKEYIPKYWIFMYYISLYRYPLDSLLTNEYWSARGECFSW 564 (627)
Q Consensus 492 ~~~i~~~~~~~~~a~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~W~~yiSp~~Y~~~~l~~nef~~~~~~C~~~ 564 (627)
|+++.+++||..+|+.+.+.++.++.+|+||++|++.||.||+|+||+||+.|-.++|+..++++.+..|...
T Consensus 1253 Gmm~~s~tPn~~~Aav~~s~~~s~~~~F~G~l~p~~~iP~fW~wmy~lsP~ty~l~gli~~~~~d~~v~c~~~ 1325 (1391)
T KOG0065|consen 1253 GMMLVSLTPNLQTAAVIASLFFSFWNLFSGFLQPRSLIPKFWIWMYYLSPVTYTLEGLISSQLGDVEVTCEDS 1325 (1391)
T ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHhcccccccccccceeeeeeecCcHHHHHHHHHHHHhCCCceeeecC
Confidence 9999999999999999999999999999999999999999999999999999999999999999988888654
|
|
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-78 Score=694.45 Aligned_cols=537 Identities=26% Similarity=0.422 Sum_probs=462.5
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCccCCChhhhcccEEEEccCCCCCCCCC
Q 006897 83 PLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKKPAQLRKICGFVAQEDNLLPLLT 162 (627)
Q Consensus 83 ~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~~~~~~~~r~~ig~v~Q~~~l~~~lT 162 (627)
...+|+|+|+-++|||++.++||.||||||||++|+|-+.......|+|.+||++..+... ++.++|++|+|.++|.||
T Consensus 127 ~~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~-~~~~aY~~e~DvH~p~lT 205 (1391)
T KOG0065|consen 127 KIQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVP-KKTVAYNSEQDVHFPELT 205 (1391)
T ss_pred cceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCccccccc-CceEEeccccccccceeE
Confidence 3579999999999999999999999999999999999887544345899999998543222 778999999999999999
Q ss_pred HHHHHHHHHHhcCCC-----CCHHHHHH-HHHHHHHHcCCccccCCcC---------CccccC-----------------
Q 006897 163 VKETLMFSANFRLKG-----MSHKEKED-RVESLMDELGLTHVAGSFV---------GDEENR----------------- 210 (627)
Q Consensus 163 V~e~l~~~~~~~~~~-----~~~~~~~~-~v~~~l~~lgL~~~~~~~~---------gGe~qr----------------- 210 (627)
|+|.|.|+++++.++ ..+.+..+ ..+.+++.+||++++|+++ ||||+|
T Consensus 206 VreTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~D 285 (1391)
T KOG0065|consen 206 VRETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWD 285 (1391)
T ss_pred EeehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeeee
Confidence 999999999987763 22333222 5788999999999999886 899999
Q ss_pred -CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeCCHHHHHHHHHhcCCCCCCCCC
Q 006897 211 -GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGSLELLEETINNLGYQIPTQLN 289 (627)
Q Consensus 211 -PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~~~~~~~g~~~p~~~~ 289 (627)
+|.|||+.++.++++.|+++++..+.|.+++.||++.++.+++|+|++|.+|+++++|+.+++.++|++.|+.||++.+
T Consensus 286 e~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~~~~yFe~~Gf~cP~r~~ 365 (1391)
T KOG0065|consen 286 EITRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDEVLPYFEDMGFKCPPRKG 365 (1391)
T ss_pred cccccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceEEeccHHHHHHHHHhcCccCCCccC
Confidence 6899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhcCCCcccccCCCC------CC-cchhh----hccCCc----ccc-----cccCCCcccccccccHHHHHHHH
Q 006897 290 AIEFAMEIMHPLEDSYSNNNN------FL-PSVED----AEQFPD----LRC-----EKVGGVEHQQHAFFLILYEIMVL 349 (627)
Q Consensus 290 ~~d~~~~~~~~~~~~~~~~~~------~~-~~~~~----~~~~~~----~~~-----~~~~~~~~~~~~~~~~~~q~~~l 349 (627)
++||+.++.+..++......+ .. .+..+ .+.... +.. .+.......+.+..+.|.|++.+
T Consensus 366 ~ADfLt~vts~k~~~~~~~~~~~~~~~~~~~ef~~~~~~s~~~~~l~~~l~~~~~~~k~~~~al~s~~y~v~~~~qvk~c 445 (1391)
T KOG0065|consen 366 TADFLTEVTSKKDQEQYWNKRSKPYPYTSVSEFAEYFLNSEDYAKLKKELSKPYDKSKKHKAALVSSKYSVPYWEQVKAC 445 (1391)
T ss_pred HHHHHHHhhcCccccccccccCCCcccCCHHHHHHHHhcchhhHHHHHHhcchhhhhhccchhhcCCceeccHHHHHHHH
Confidence 999999998843332211111 00 01110 000000 000 01111123456778999999999
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhccCC-CChhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhHHHHHHh
Q 006897 350 CSRFWKIIYRTKQLFLARTMQALVGGFGLGSVYVRVR-KDEAGVAERLGLFAFSLSFLLSSTVEALPIYLQERRVLMKEA 428 (627)
Q Consensus 350 ~~R~~~~~~Rd~~~~~~r~~~~~~~~l~~G~~f~~~~-~~~~~~~~~~g~~ff~~~~~~~~~~~~i~~~~~er~v~~rE~ 428 (627)
++|.|..+.||..++..++++.+++|+++|++|++++ .+..+.+.|.|++||++++.++.++++++..++.|+||+|||
T Consensus 446 ~~R~f~l~k~n~~~~~~~~~~~~i~ali~gslF~~~~~~t~~~~~~~~~~lffsll~~~f~~laEi~~~~~~~pv~~Khr 525 (1391)
T KOG0065|consen 446 TIREFLLMKRNYFYYVFKTVQLVIQALITGSLFYRTPMSTTSGGYSRGGALFFALLFNLFNGLAEIALTFQRLPVFYKHR 525 (1391)
T ss_pred HHHHHHHHhCCceEEEhHHHHHHHHHHHHhhheeeccCcccccchhhhhHHHHHHHHHHHHhHHHHHHHHhhcchHHHhh
Confidence 9999999999999999999999999999999999999 778889999999999999999999999999999999999999
Q ss_pred cCCCCChHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHH
Q 006897 429 SREAYRISSYLIANTIVFLPFLFVVSLLFAIPVYWIVGLNPSIEAFVFFIFVVWLIVLMASSLVLFLSAISPDFISGNSL 508 (627)
Q Consensus 429 ~~~~Y~~~~y~la~~l~~lp~~~~~~~~f~~i~Y~~~gl~~~~~~f~~f~~~~~l~~~~~~s~~~~i~~~~~~~~~a~~~ 508 (627)
...+|++++|.++.++.++|+.++.+++|.+|+||++||.+++.+||.|++++++...|+.++++++++++++...|+++
T Consensus 526 ~~~fY~p~A~al~s~l~~~P~~~i~~~vf~iI~Yfl~gl~~~A~rFF~~fL~lf~~~~~~s~lFr~ia~l~~t~~~An~~ 605 (1391)
T KOG0065|consen 526 DLSFYPPWAEALASTLLKIPSSFIESVVFVIITYFLIGLKRNAGRFFIQFLFLFLCQFCMSGLFRFIASLSRTLSIANLI 605 (1391)
T ss_pred cccccChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHhhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccccCCCCCcchhhhhhhhchhHHHHHHHHHHHhCCCCccccccccCCCCCC--CCCccc--------
Q 006897 509 ICTVLGAFFLFSGYFIPKEYIPKYWIFMYYISLYRYPLDSLLTNEYWSARGECFSWQKYNNVDG--DHFSKC-------- 578 (627)
Q Consensus 509 ~~~~~~~~~lf~Gf~i~~~~ip~~~~W~~yiSp~~Y~~~~l~~nef~~~~~~C~~~~~~~~~~~--~~~~~c-------- 578 (627)
+++.++.+.+++||+||.++||+||+|++|+||+.|++|+++.|||++++..|.+. +|+.++ ..+..|
T Consensus 606 g~~~~L~i~m~~Gf~Ip~~~m~~W~~Wi~yinPl~Y~fesl~~NEF~~~~~~c~p~--gp~y~n~~~~~~~c~~~~~~~G 683 (1391)
T KOG0065|consen 606 GGILLLVLFMYGGFVIPKKDMPPWFRWIAYINPLMYAFESLMSNEFHGRRWPCSPS--GPAYDNISIENKVCAATGATLG 683 (1391)
T ss_pred hHHHHHHHHHHcceeeeccccchHHHHHHHHCHHHHHHHHHHHhhhhcccCCCCCC--CCcccccccccccchhhccccC
Confidence 99999999999999999999999999999999999999999999999999999732 222221 111233
Q ss_pred --ccchHHHHh-hcCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhhc
Q 006897 579 --LLTGNDVLK-SRGLEKDTRWVNVGVMLAFFLFYRVLCWIILSRRA 622 (627)
Q Consensus 579 --~~~G~~~L~-~~~~~~~~~w~~~~il~~~~~~~~~l~~~~L~~~~ 622 (627)
.+.|.++++ .|++++.+.|+|++|++||.++|.++..+++.+.+
T Consensus 684 ~~~v~g~~~l~~~~~y~~~~~Wr~~gillgf~v~f~~~~~ia~~yl~ 730 (1391)
T KOG0065|consen 684 NDYVSGRDYLKVQYQYEYKWYWRNFGILLGFTVFFNFVFLIALEYLK 730 (1391)
T ss_pred ceEEecccccccccccccceeEeehhHHHHHHHHHHHHHHHHHHhcC
Confidence 245566663 47777899999999999999999999999998875
|
|
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-45 Score=347.24 Aligned_cols=198 Identities=27% Similarity=0.488 Sum_probs=180.1
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
+|+++||+|+| +..++|+|||++|++||+++|+||||||||||||||.|+.+|++ |+|.++|
T Consensus 2 mi~i~~l~K~f---------------g~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~---G~I~i~g 63 (240)
T COG1126 2 MIEIKNLSKSF---------------GDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDS---GSITVDG 63 (240)
T ss_pred eEEEEeeeEEe---------------CCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCC---ceEEECC
Confidence 69999999999 45679999999999999999999999999999999999999875 9999999
Q ss_pred ccCC---ChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccCC----cCCccc
Q 006897 136 HQIK---KPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAGS----FVGDEE 208 (627)
Q Consensus 136 ~~~~---~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~----~~gGe~ 208 (627)
+++. +...+|+++|+|||+.+|||.+||.||+.++.. +..+.++++.++++.++|+++||.+.++. ++||||
T Consensus 64 ~~~~~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~-~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQq 142 (240)
T COG1126 64 EDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPV-KVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQ 142 (240)
T ss_pred EeccchhhHHHHHHhcCeecccccccccchHHHHHHhhhH-HHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHH
Confidence 7753 245689999999999999999999999999753 44567899999999999999999887764 559999
Q ss_pred cC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeCCH
Q 006897 209 NR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGSL 270 (627)
Q Consensus 209 qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~ 270 (627)
|| |||+|||....++++.+++++++ |.|+|++||++.. +.+.+|||++|++|++++.|++
T Consensus 143 QRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~e-GmTMivVTHEM~F-Ar~VadrviFmd~G~iie~g~p 220 (240)
T COG1126 143 QRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEE-GMTMIIVTHEMGF-AREVADRVIFMDQGKIIEEGPP 220 (240)
T ss_pred HHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHc-CCeEEEEechhHH-HHHhhheEEEeeCCEEEEecCH
Confidence 99 99999999999999999999975 9999999999996 8899999999999999999999
Q ss_pred HHHH
Q 006897 271 ELLE 274 (627)
Q Consensus 271 ~~~~ 274 (627)
+++.
T Consensus 221 ~~~f 224 (240)
T COG1126 221 EEFF 224 (240)
T ss_pred HHHh
Confidence 8763
|
|
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-43 Score=338.05 Aligned_cols=199 Identities=24% Similarity=0.451 Sum_probs=182.7
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
||+++||||.|. ++.+++|+||+|++||+++++|||||||||+||+|.+++.|++ |+|.+||
T Consensus 1 MI~~~nvsk~y~---------------~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~---G~I~i~g 62 (309)
T COG1125 1 MIEFENVSKRYG---------------NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTS---GEILIDG 62 (309)
T ss_pred CceeeeeehhcC---------------CceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCC---ceEEECC
Confidence 589999999993 4579999999999999999999999999999999999999975 9999999
Q ss_pred ccCCC--hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCcc--ccC----CcCCcc
Q 006897 136 HQIKK--PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTH--VAG----SFVGDE 207 (627)
Q Consensus 136 ~~~~~--~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~--~~~----~~~gGe 207 (627)
+++.+ ..++|++||||-|...|||++||.||+.+...+ .++++++.+++++++|+.+||+. .++ .++|||
T Consensus 63 ~~i~~~d~~~LRr~IGYviQqigLFPh~Tv~eNIa~VP~L--~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQ 140 (309)
T COG1125 63 EDISDLDPVELRRKIGYVIQQIGLFPHLTVAENIATVPKL--LGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQ 140 (309)
T ss_pred eecccCCHHHHHHhhhhhhhhcccCCCccHHHHHHhhhhh--cCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcch
Confidence 99854 568999999999999999999999999997654 46788999999999999999974 444 456999
Q ss_pred ccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeCC
Q 006897 208 ENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGS 269 (627)
Q Consensus 208 ~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~ 269 (627)
+|| |+++|||.++.++-+.++++.++.|+|||++|||++ |+.+++|||.+|++|+++..++
T Consensus 141 QQRVGv~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDid-EA~kLadri~vm~~G~i~Q~~~ 219 (309)
T COG1125 141 QQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDID-EALKLADRIAVMDAGEIVQYDT 219 (309)
T ss_pred hhHHHHHHHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHH-HHHhhhceEEEecCCeEEEeCC
Confidence 999 999999999999999999999999999999999999 6999999999999999999999
Q ss_pred HHHHHH
Q 006897 270 LELLEE 275 (627)
Q Consensus 270 ~~~~~~ 275 (627)
|+++..
T Consensus 220 P~~il~ 225 (309)
T COG1125 220 PDEILA 225 (309)
T ss_pred HHHHHh
Confidence 998754
|
|
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-42 Score=342.86 Aligned_cols=203 Identities=28% Similarity=0.431 Sum_probs=183.1
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
+|+++||+|.|..+ .++...+|+||||+|++||++||||.||||||||+|++.++.+|++ |+|.++|
T Consensus 1 mI~l~~vsK~~~~~----------~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~Pts---G~v~v~G 67 (339)
T COG1135 1 MIELENVSKTFGQT----------GTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTS---GSVFVDG 67 (339)
T ss_pred CeEEEeeeeeeccC----------CCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCC---ceEEEcC
Confidence 58999999999532 1234579999999999999999999999999999999999999975 9999999
Q ss_pred ccCCC-----hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccCCc----CCc
Q 006897 136 HQIKK-----PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAGSF----VGD 206 (627)
Q Consensus 136 ~~~~~-----~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~----~gG 206 (627)
+++.. ...+|++||++||+..|+...||.||++|++.+. +.++++.++|+.++|+.+||++.++++ +||
T Consensus 68 ~di~~l~~~~Lr~~R~~IGMIFQhFnLLssrTV~~NvA~PLeia--g~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGG 145 (339)
T COG1135 68 QDLTALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELA--GVPKAEIKQRVAELLELVGLSDKADRYPAQLSGG 145 (339)
T ss_pred EecccCChHHHHHHHhhccEEeccccccccchHHhhhhhhHhhc--CCCHHHHHHHHHHHHHHcCChhhhccCchhcCcc
Confidence 88742 2567899999999999999999999999997654 578999999999999999999887765 499
Q ss_pred cccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeC
Q 006897 207 EENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYG 268 (627)
Q Consensus 207 e~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G 268 (627)
|||| +||+|||.+.+.|+++|+++.++.|.||+++||+++. +.++|||+.+|++|++++.|
T Consensus 146 QKQRVaIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~V-vk~ic~rVavm~~G~lvE~G 224 (339)
T COG1135 146 QKQRVAIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEV-VKRICDRVAVLDQGRLVEEG 224 (339)
T ss_pred hhhHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHH-HHHHhhhheEeeCCEEEEec
Confidence 9999 8999999999999999999999999999999999995 89999999999999999999
Q ss_pred CHHHHH
Q 006897 269 SLELLE 274 (627)
Q Consensus 269 ~~~~~~ 274 (627)
+..++.
T Consensus 225 ~v~~vF 230 (339)
T COG1135 225 TVSEVF 230 (339)
T ss_pred cHHHhh
Confidence 987763
|
|
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-41 Score=339.14 Aligned_cols=200 Identities=31% Similarity=0.479 Sum_probs=177.4
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
+|+++||+++|+ ++.+|+|+||++++||+++|+||||||||||||+|+|+++|.+ |+|.++|
T Consensus 2 ~L~~~~ls~~y~---------------~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~---G~V~l~g 63 (258)
T COG1120 2 MLEVENLSFGYG---------------GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKS---GEVLLDG 63 (258)
T ss_pred eeEEEEEEEEEC---------------CeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCC---CEEEECC
Confidence 689999999993 4579999999999999999999999999999999999999964 9999999
Q ss_pred ccCCC--hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCC--CHHHHHHHHHHHHHHcCCccccCC----cCCcc
Q 006897 136 HQIKK--PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGM--SHKEKEDRVESLMDELGLTHVAGS----FVGDE 207 (627)
Q Consensus 136 ~~~~~--~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~--~~~~~~~~v~~~l~~lgL~~~~~~----~~gGe 207 (627)
+++.+ .+++.+.+|||||.+...+.+||+|.+.++..-+.... ..+++++.++++|+.+|+.+.+++ ++|||
T Consensus 64 ~~i~~~~~kelAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGe 143 (258)
T COG1120 64 KDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGE 143 (258)
T ss_pred CchhhcCHHHHhhhEEEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhH
Confidence 99743 57788999999999887778999999999854322222 245566789999999999987765 45999
Q ss_pred ccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeCC
Q 006897 208 ENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGS 269 (627)
Q Consensus 208 ~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~ 269 (627)
||| ||+.||...+.+++++++++++++|+|||+++||++. +.++||++++|++|++++.|+
T Consensus 144 rQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~-A~ryad~~i~lk~G~i~a~G~ 222 (258)
T COG1120 144 RQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNL-AARYADHLILLKDGKIVAQGT 222 (258)
T ss_pred HHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH-HHHhCCEEEEEECCeEEeecC
Confidence 999 9999999999999999999998889999999999996 899999999999999999999
Q ss_pred HHHHH
Q 006897 270 LELLE 274 (627)
Q Consensus 270 ~~~~~ 274 (627)
|+++.
T Consensus 223 p~evl 227 (258)
T COG1120 223 PEEVL 227 (258)
T ss_pred cchhc
Confidence 88763
|
|
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-41 Score=323.50 Aligned_cols=207 Identities=29% Similarity=0.448 Sum_probs=181.4
Q ss_pred ceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEEC
Q 006897 55 CKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVN 134 (627)
Q Consensus 55 ~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~ 134 (627)
.+|+++||++.|+ +++++|+||||+|++||++||+||||||||||||+|+|+..|+. |+|.++
T Consensus 2 ~~i~~~nl~k~yp--------------~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~---G~i~~~ 64 (258)
T COG3638 2 MMIEVKNLSKTYP--------------GGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTS---GEILFN 64 (258)
T ss_pred ceEEEeeeeeecC--------------CCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCc---ceEEec
Confidence 3799999999995 34579999999999999999999999999999999999998864 999999
Q ss_pred CccCCC-----hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcC------CCCCHHHHHHHHHHHHHHcCCccc----
Q 006897 135 CHQIKK-----PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRL------KGMSHKEKEDRVESLMDELGLTHV---- 199 (627)
Q Consensus 135 g~~~~~-----~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~------~~~~~~~~~~~v~~~l~~lgL~~~---- 199 (627)
|.++.. .+++|+++||+||++.|.+.+||.+|+..+..-+. -+...++.+.++.++|+++|+.+.
T Consensus 65 g~~i~~~~~k~lr~~r~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qr 144 (258)
T COG3638 65 GVQITKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQR 144 (258)
T ss_pred ccchhccchHHHHHHHHhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHH
Confidence 988642 24678899999999999999999999998742221 123345667889999999999764
Q ss_pred cCCcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecC
Q 006897 200 AGSFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSR 261 (627)
Q Consensus 200 ~~~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~ 261 (627)
+++++|||+|| |++.|||.+++++|+.|++++++.|.|+|++.|+++. +.++|||++-|++
T Consensus 145 a~~LSGGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdl-A~~Y~~Riigl~~ 223 (258)
T COG3638 145 ASTLSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDL-AKKYADRIIGLKA 223 (258)
T ss_pred hccCCcchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHH-HHHHHhhheEecC
Confidence 57888999999 9999999999999999999999999999999999996 8999999999999
Q ss_pred CeEEeeCCHHHHHHHHHh
Q 006897 262 GSVVHYGSLELLEETINN 279 (627)
Q Consensus 262 G~iv~~G~~~~~~~~~~~ 279 (627)
|+++++|+++++.+....
T Consensus 224 G~ivfDg~~~el~~~~~~ 241 (258)
T COG3638 224 GRIVFDGPASELTDEALD 241 (258)
T ss_pred CcEEEeCChhhhhHHHHH
Confidence 999999999987665443
|
|
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-41 Score=323.88 Aligned_cols=202 Identities=29% Similarity=0.390 Sum_probs=182.4
Q ss_pred cceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEE
Q 006897 54 TCKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITV 133 (627)
Q Consensus 54 ~~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i 133 (627)
...|++++|+++| +++.|++||||+|++||+++|+||||||||||||+|.|+++|++ |+|.+
T Consensus 6 ~~~I~vr~v~~~f---------------G~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~---GeI~i 67 (263)
T COG1127 6 EPLIEVRGVTKSF---------------GDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDK---GEILI 67 (263)
T ss_pred cceEEEeeeeeec---------------CCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCC---CeEEE
Confidence 3479999999999 45679999999999999999999999999999999999999975 99999
Q ss_pred CCccCCC-----hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccc-cC----Cc
Q 006897 134 NCHQIKK-----PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHV-AG----SF 203 (627)
Q Consensus 134 ~g~~~~~-----~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~----~~ 203 (627)
+|+++.. ..++|+++|++||+..||..+||+||+.|..+-+ .+.+++..++.+..-|+.+||... ++ .+
T Consensus 68 ~G~~i~~ls~~~~~~ir~r~GvlFQ~gALFssltV~eNVafplre~-~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsEL 146 (263)
T COG1127 68 DGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREH-TKLPESLIRELVLMKLELVGLRGAAADLYPSEL 146 (263)
T ss_pred cCcchhccCHHHHHHHHhheeEEeeccccccccchhHhhheehHhh-ccCCHHHHHHHHHHHHHhcCCChhhhhhCchhh
Confidence 9999743 2357899999999999999999999999987543 346888899999999999999866 43 45
Q ss_pred CCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEE
Q 006897 204 VGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVV 265 (627)
Q Consensus 204 ~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv 265 (627)
+||+++| ||+||||.++..+.++++++.++.|.|+++||||++ ++..+|||+++|.+|+|+
T Consensus 147 SGGM~KRvaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~-s~~~i~Drv~~L~~gkv~ 225 (263)
T COG1127 147 SGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLD-SLLTIADRVAVLADGKVI 225 (263)
T ss_pred cchHHHHHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChH-HHHhhhceEEEEeCCEEE
Confidence 6999998 999999999999999999999999999999999999 599999999999999999
Q ss_pred eeCCHHHHHH
Q 006897 266 HYGSLELLEE 275 (627)
Q Consensus 266 ~~G~~~~~~~ 275 (627)
+.|+++++.+
T Consensus 226 ~~Gt~~el~~ 235 (263)
T COG1127 226 AEGTPEELLA 235 (263)
T ss_pred EeCCHHHHHh
Confidence 9999998854
|
|
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-41 Score=348.99 Aligned_cols=201 Identities=25% Similarity=0.416 Sum_probs=182.6
Q ss_pred ceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEEC
Q 006897 55 CKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVN 134 (627)
Q Consensus 55 ~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~ 134 (627)
..++++||+++|+ +..+|+|+|++|++||+++|+||||||||||||+|+|+..|++ |+|.++
T Consensus 4 ~~l~i~~v~k~yg---------------~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~---G~I~l~ 65 (352)
T COG3842 4 PALEIRNVSKSFG---------------DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSS---GEILLD 65 (352)
T ss_pred ceEEEEeeeeecC---------------CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCC---ceEEEC
Confidence 3699999999993 4579999999999999999999999999999999999999975 999999
Q ss_pred CccCCChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccCCc----CCccccC
Q 006897 135 CHQIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAGSF----VGDEENR 210 (627)
Q Consensus 135 g~~~~~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~----~gGe~qr 210 (627)
|+++.+..-.+|.||+|||+..|||+|||+||++|+++.+ ...++++.+++++++|+.++|++.++++ +|||+||
T Consensus 66 G~~i~~lpp~kR~ig~VFQ~YALFPHltV~~NVafGLk~~-~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQR 144 (352)
T COG3842 66 GEDITDVPPEKRPIGMVFQSYALFPHMTVEENVAFGLKVR-KKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQR 144 (352)
T ss_pred CEECCCCChhhcccceeecCcccCCCCcHHHHhhhhhhhc-CCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHH
Confidence 9998665556889999999999999999999999998633 2235567889999999999999877654 5999999
Q ss_pred ------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeCCHHH
Q 006897 211 ------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGSLEL 272 (627)
Q Consensus 211 ------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~ 272 (627)
|+|+||..-+.++...|+++.++.|.|.|++|||.+ |+..++|||++|++|+|...|+|++
T Consensus 145 VALARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqe-EAl~msDrI~Vm~~G~I~Q~gtP~e 223 (352)
T COG3842 145 VALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQE-EALAMSDRIAVMNDGRIEQVGTPEE 223 (352)
T ss_pred HHHHHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHH-HHhhhccceEEccCCceeecCCHHH
Confidence 999999999999999999999999999999999998 6899999999999999999999998
Q ss_pred HHH
Q 006897 273 LEE 275 (627)
Q Consensus 273 ~~~ 275 (627)
+..
T Consensus 224 iY~ 226 (352)
T COG3842 224 IYE 226 (352)
T ss_pred Hhh
Confidence 843
|
|
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-40 Score=344.14 Aligned_cols=200 Identities=23% Similarity=0.419 Sum_probs=182.3
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
+|+++||++.|+ +..+|+|+|++|++||+++|+||||||||||||+|+|+.+|++ |+|.++|
T Consensus 3 ~i~l~~v~K~yg---------------~~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~---G~I~i~g 64 (338)
T COG3839 3 ELELKNVRKSFG---------------SFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTS---GEILIDG 64 (338)
T ss_pred EEEEeeeEEEcC---------------CceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---ceEEECC
Confidence 699999999994 2228999999999999999999999999999999999999975 9999999
Q ss_pred ccCCChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccCCc----CCccccC-
Q 006897 136 HQIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAGSF----VGDEENR- 210 (627)
Q Consensus 136 ~~~~~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~----~gGe~qr- 210 (627)
+++.+..-.+|.||+|||+..|||.|||+||+.|+++. .+.++++.+++++++.+.++|++..+++ +||||||
T Consensus 65 ~~vt~l~P~~R~iamVFQ~yALyPhmtV~~Niaf~Lk~--~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRV 142 (338)
T COG3839 65 RDVTDLPPEKRGIAMVFQNYALYPHMTVYENIAFGLKL--RGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRV 142 (338)
T ss_pred EECCCCChhHCCEEEEeCCccccCCCcHHHHhhhhhhh--CCCchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHH
Confidence 99865444568899999999999999999999999755 4567899999999999999999888765 4999999
Q ss_pred -----------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeCCHHHH
Q 006897 211 -----------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGSLELL 273 (627)
Q Consensus 211 -----------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~ 273 (627)
|+|+||+..+..+...|+++.++.|.|+|.+|||.. |+..++|||++|++|++...|+|.++
T Consensus 143 AlaRAlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~-EAmtladri~Vm~~G~i~Q~g~p~el 221 (338)
T COG3839 143 ALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQV-EAMTLADRIVVMNDGRIQQVGTPLEL 221 (338)
T ss_pred HHHHHHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHH-HHHhhCCEEEEEeCCeeeecCChHHH
Confidence 999999999999999999999999999999999987 69999999999999999999999988
Q ss_pred HHH
Q 006897 274 EET 276 (627)
Q Consensus 274 ~~~ 276 (627)
.+.
T Consensus 222 y~~ 224 (338)
T COG3839 222 YER 224 (338)
T ss_pred hhC
Confidence 643
|
|
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-39 Score=336.15 Aligned_cols=204 Identities=35% Similarity=0.530 Sum_probs=180.4
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
.++++||+++|+. .+.+|+||||++++||++||+||||||||||+|+|+|+++|++ |+|.++|
T Consensus 4 ~i~~~~l~k~~~~--------------~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~---G~i~i~G 66 (293)
T COG1131 4 VIEVRNLTKKYGG--------------DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTS---GEILVLG 66 (293)
T ss_pred eeeecceEEEeCC--------------CCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCc---eEEEEcC
Confidence 5889999999931 3579999999999999999999999999999999999999964 9999999
Q ss_pred ccCCC-hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccC----CcCCccccC
Q 006897 136 HQIKK-PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAG----SFVGDEENR 210 (627)
Q Consensus 136 ~~~~~-~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~----~~~gGe~qr 210 (627)
.+... ..+.++++||+||++.+++.+||+|||.|.+.++.. +....+++++++++.+||.+..+ .+++|+|||
T Consensus 67 ~~~~~~~~~~~~~igy~~~~~~~~~~lT~~e~l~~~~~l~~~--~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqr 144 (293)
T COG1131 67 YDVVKEPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGL--SKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQR 144 (293)
T ss_pred EeCccCHHHHHhheEEEccCCCCCccccHHHHHHHHHHHhCC--ChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHH
Confidence 88643 467889999999999999999999999999877643 33556789999999999987443 456999999
Q ss_pred ------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeCCHHH
Q 006897 211 ------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGSLEL 272 (627)
Q Consensus 211 ------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~ 272 (627)
||+||||.++.++++.|++++++.|+||+++||+++ ++.++||||++|++|++++.|++++
T Consensus 145 l~ia~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~-e~~~~~d~v~il~~G~~~~~g~~~~ 223 (293)
T COG1131 145 LSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILE-EAEELCDRVIILNDGKIIAEGTPEE 223 (293)
T ss_pred HHHHHHHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHH-HHHHhCCEEEEEeCCEEEEeCCHHH
Confidence 999999999999999999999875589999999999 6999999999999999999999998
Q ss_pred HHHHHHh
Q 006897 273 LEETINN 279 (627)
Q Consensus 273 ~~~~~~~ 279 (627)
+...+..
T Consensus 224 l~~~~~~ 230 (293)
T COG1131 224 LKEKFGG 230 (293)
T ss_pred HHHhhcc
Confidence 7766543
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-39 Score=314.96 Aligned_cols=192 Identities=32% Similarity=0.508 Sum_probs=165.1
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
+++++||++.|..+. ...++|+++||+|++||++||+|||||||||||++|.|+.+|++ |.+.++|
T Consensus 1 ~i~~~~v~k~y~~~~-----------~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~---G~v~i~g 66 (226)
T COG1136 1 MIELKNVSKIYGLGG-----------EKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTS---GEVLING 66 (226)
T ss_pred CcEEeeeEEEeccCC-----------cceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCC---ceEEECC
Confidence 367999999995432 23579999999999999999999999999999999999999964 9999999
Q ss_pred ccCCC-----hhhhc-ccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccC-----CcC
Q 006897 136 HQIKK-----PAQLR-KICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAG-----SFV 204 (627)
Q Consensus 136 ~~~~~-----~~~~r-~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~-----~~~ 204 (627)
+++.. ...+| ++||||||+..|.|.+||.||+.+++.+. +.+..+.+++++++++.+||.+..+ +++
T Consensus 67 ~d~~~l~~~~~~~~R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~--~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLS 144 (226)
T COG1136 67 KDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIA--GKSAGRRKRAAEELLEVLGLEDRLLKKKPSELS 144 (226)
T ss_pred EEcCcCCHHHHHHHHHHhEEEECccCCCCCCCCHHHHHHhHHHHc--CCChhHHHHHHHHHHHhcCChhhhccCCchhcC
Confidence 88742 12344 57999999999999999999999987543 3333367788999999999985443 566
Q ss_pred CccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEE
Q 006897 205 GDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVV 265 (627)
Q Consensus 205 gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv 265 (627)
|||||| ||.+||+.+.+++++++++++++.|+|||++|||+. +..+|||++.|++|++.
T Consensus 145 GGqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~--lA~~~dr~i~l~dG~~~ 221 (226)
T COG1136 145 GGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPE--LAKYADRVIELKDGKIE 221 (226)
T ss_pred HHHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHH--HHHhCCEEEEEeCCeee
Confidence 999999 999999999999999999999888999999999986 78999999999999943
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-39 Score=316.70 Aligned_cols=185 Identities=25% Similarity=0.469 Sum_probs=166.4
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
.++++++++.|. ...+|+||||+|++||+++|+||||||||||||+|+|+.+|++ |+|.++|
T Consensus 3 ~l~i~~v~~~f~---------------~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~---G~V~~~g 64 (248)
T COG1116 3 LLEIEGVSKSFG---------------GVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTS---GEVLLDG 64 (248)
T ss_pred eEEEEeeEEEeC---------------ceEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---ceEEECC
Confidence 689999999994 3579999999999999999999999999999999999999974 9999999
Q ss_pred ccCCChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccCC----cCCccccC-
Q 006897 136 HQIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAGS----FVGDEENR- 210 (627)
Q Consensus 136 ~~~~~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~----~~gGe~qr- 210 (627)
+++. .-...+|||||++.++|.+||+||+.++.... +.++++.+++++++|+.+||.+..++ ++||+|||
T Consensus 65 ~~v~---~p~~~~~~vFQ~~~LlPW~Tv~~NV~l~l~~~--~~~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRV 139 (248)
T COG1116 65 RPVT---GPGPDIGYVFQEDALLPWLTVLDNVALGLELR--GKSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRV 139 (248)
T ss_pred cccC---CCCCCEEEEeccCcccchhhHHhhheehhhcc--ccchHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHH
Confidence 8852 33567999999999999999999999997654 34677788899999999999877665 45999999
Q ss_pred -----------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecC--CeE
Q 006897 211 -----------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSR--GSV 264 (627)
Q Consensus 211 -----------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~--G~i 264 (627)
|+++||+.++.++.+.|.++.++.++||++||||.+ |+..++|||++|.+ |+|
T Consensus 140 aiARAL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~-EAv~LsdRivvl~~~P~~i 211 (248)
T COG1116 140 AIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVD-EAVYLADRVVVLSNRPGRI 211 (248)
T ss_pred HHHHHHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHH-HHHhhhCEEEEecCCCcce
Confidence 999999999999999999999999999999999999 68899999999998 444
|
|
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-39 Score=323.42 Aligned_cols=201 Identities=25% Similarity=0.427 Sum_probs=179.5
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
+|+++|+++.++ ...+++|||++|+.||++|++||||||||||||+|+|+..|+. |.|.+||
T Consensus 2 ~i~i~~~~~~~~---------------~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~---G~I~~~~ 63 (345)
T COG1118 2 SIRINNVKKRFG---------------AFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDA---GRIRLNG 63 (345)
T ss_pred ceeehhhhhhcc---------------cccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCC---ceEEECC
Confidence 588999999883 4568999999999999999999999999999999999999975 9999999
Q ss_pred c---cCCChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccCCcC----Cccc
Q 006897 136 H---QIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAGSFV----GDEE 208 (627)
Q Consensus 136 ~---~~~~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~----gGe~ 208 (627)
+ |..+...-.++||||||+..+|+.|||.|||+|+++.+....++.+++.++.++|+.+.|++.+++++ |||+
T Consensus 64 ~~l~D~~~~~~~~R~VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQr 143 (345)
T COG1118 64 RVLFDVSNLAVRDRKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQR 143 (345)
T ss_pred EeccchhccchhhcceeEEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHH
Confidence 9 42222333478999999999999999999999998766333467788999999999999998887654 9999
Q ss_pred cC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeCCH
Q 006897 209 NR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGSL 270 (627)
Q Consensus 209 qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~ 270 (627)
|| |+++||...+.++.+-|+++.++.|.|++++|||++ |+.++||||++|++|+|...|++
T Consensus 144 QRVALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~e-ea~~ladrvvvl~~G~Ieqvg~p 222 (345)
T COG1118 144 QRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQE-EALELADRVVVLNQGRIEQVGPP 222 (345)
T ss_pred HHHHHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHH-HHHhhcceEEEecCCeeeeeCCH
Confidence 99 999999999999999999999888999999999998 69999999999999999999999
Q ss_pred HHHHH
Q 006897 271 ELLEE 275 (627)
Q Consensus 271 ~~~~~ 275 (627)
+++.+
T Consensus 223 ~ev~~ 227 (345)
T COG1118 223 DEVYD 227 (345)
T ss_pred HHHhc
Confidence 98854
|
|
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-38 Score=314.57 Aligned_cols=198 Identities=22% Similarity=0.444 Sum_probs=166.9
Q ss_pred ceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEEC
Q 006897 55 CKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVN 134 (627)
Q Consensus 55 ~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~ 134 (627)
.+|+++|+++.|.. . ++|+||||++++||+++|+||||||||||+|+|+|+++|.. |+|.++
T Consensus 3 ~~i~v~nl~v~y~~--------------~-~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~---G~i~~~ 64 (254)
T COG1121 3 PMIEVENLTVSYGN--------------R-PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSS---GEIKIF 64 (254)
T ss_pred cEEEEeeeEEEECC--------------E-eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCc---ceEEEc
Confidence 37999999999941 2 59999999999999999999999999999999999999974 999999
Q ss_pred CccCCChhhhcccEEEEccCC---CCCCCCCHHHHHHHHHHhcCC--CCCHHHHHHHHHHHHHHcCCccccCCc----CC
Q 006897 135 CHQIKKPAQLRKICGFVAQED---NLLPLLTVKETLMFSANFRLK--GMSHKEKEDRVESLMDELGLTHVAGSF----VG 205 (627)
Q Consensus 135 g~~~~~~~~~r~~ig~v~Q~~---~l~~~lTV~e~l~~~~~~~~~--~~~~~~~~~~v~~~l~~lgL~~~~~~~----~g 205 (627)
|++... ..-+.+||||||.. .-|| +||+|.+..+...+.. +...++.+++++++|+.+|+.+.+++. +|
T Consensus 65 g~~~~~-~~~~~~IgYVPQ~~~~d~~fP-~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSG 142 (254)
T COG1121 65 GKPVRK-RRKRLRIGYVPQKSSVDRSFP-ITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSG 142 (254)
T ss_pred cccccc-cccCCeEEEcCcccccCCCCC-cCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCcccccCc
Confidence 987432 22246899999964 3466 6999999987432221 122344578999999999999887754 59
Q ss_pred ccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEee
Q 006897 206 DEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHY 267 (627)
Q Consensus 206 Ge~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~ 267 (627)
||+|| |++|+|+.++.++.++|++++++ |+||+++|||++. +.++||+|+.|+ +++++.
T Consensus 143 GQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~e-g~tIl~vtHDL~~-v~~~~D~vi~Ln-~~~~~~ 219 (254)
T COG1121 143 GQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQE-GKTVLMVTHDLGL-VMAYFDRVICLN-RHLIAS 219 (254)
T ss_pred HHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCcHH-hHhhCCEEEEEc-CeeEec
Confidence 99999 99999999999999999999887 9999999999995 999999999996 578899
Q ss_pred CCHHHHHH
Q 006897 268 GSLELLEE 275 (627)
Q Consensus 268 G~~~~~~~ 275 (627)
|+++++.+
T Consensus 220 G~~~~~~~ 227 (254)
T COG1121 220 GPPEEVLT 227 (254)
T ss_pred cChhhccC
Confidence 99988743
|
|
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-39 Score=298.08 Aligned_cols=193 Identities=30% Similarity=0.446 Sum_probs=172.3
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
||+++||++.|.. .+.+|+||||+|++||++-|+||||||||||||+|.+..+|+. |+|.++|
T Consensus 1 mI~f~~V~k~Y~~--------------g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~---G~i~~~~ 63 (223)
T COG2884 1 MIRFENVSKAYPG--------------GREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTR---GKILVNG 63 (223)
T ss_pred CeeehhhhhhcCC--------------CchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCC---ceEEECC
Confidence 5899999999952 2569999999999999999999999999999999999999975 9999999
Q ss_pred ccCCC-----hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccC----CcCCc
Q 006897 136 HQIKK-----PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAG----SFVGD 206 (627)
Q Consensus 136 ~~~~~-----~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~----~~~gG 206 (627)
+++.. ..-+|++||+||||..|.+.+||+||++|+.+. .+.++++.++++.++|+.+||.+.++ +++||
T Consensus 64 ~dl~~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~pL~v--~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGG 141 (223)
T COG2884 64 HDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRV--IGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGG 141 (223)
T ss_pred eecccccccccchhhheeeeEeeeccccccchHhhhhhhhhhc--cCCCHHHHHHHHHHHHHHhccchhhhcCccccCch
Confidence 99843 245799999999999999999999999998754 45678899999999999999987665 55699
Q ss_pred cccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeC
Q 006897 207 EENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYG 268 (627)
Q Consensus 207 e~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G 268 (627)
|||| ||.+|||..+.+|++++.++.+ .|+||+|.|||.+. +.++-.|++.|++|+++.+.
T Consensus 142 EQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr-~GtTVl~ATHd~~l-v~~~~~rvl~l~~Grl~~d~ 219 (223)
T COG2884 142 EQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINR-LGTTVLMATHDLEL-VNRMRHRVLALEDGRLVRDE 219 (223)
T ss_pred HHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhh-cCcEEEEEeccHHH-HHhccCcEEEEeCCEEEecc
Confidence 9999 9999999999999999999976 69999999999984 77777899999999998764
Q ss_pred C
Q 006897 269 S 269 (627)
Q Consensus 269 ~ 269 (627)
.
T Consensus 220 ~ 220 (223)
T COG2884 220 S 220 (223)
T ss_pred c
Confidence 3
|
|
| >COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-38 Score=299.24 Aligned_cols=201 Identities=26% Similarity=0.433 Sum_probs=181.1
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
||++.+++++|++ ..++++||||++++||++||+|||||||||+||+|++++.|++ |.|+++|
T Consensus 1 Ml~v~~l~K~y~~--------------~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~---G~v~idg 63 (245)
T COG4555 1 MLEVTDLTKSYGS--------------KVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDS---GKVTIDG 63 (245)
T ss_pred CeeeeehhhhccC--------------HHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCC---ceEEEee
Confidence 5899999999942 2358999999999999999999999999999999999999975 9999999
Q ss_pred ccCC-ChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccCCcC----CccccC
Q 006897 136 HQIK-KPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAGSFV----GDEENR 210 (627)
Q Consensus 136 ~~~~-~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~----gGe~qr 210 (627)
.+.. ++...|++||.++.+..++..||++|||.|.+++. ++..++.+++++++.+.++|.++.|+.+ -|+|||
T Consensus 64 ~d~~~~p~~vrr~IGVl~~e~glY~RlT~rEnl~~Fa~L~--~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqk 141 (245)
T COG4555 64 VDTVRDPSFVRRKIGVLFGERGLYARLTARENLKYFARLN--GLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQK 141 (245)
T ss_pred cccccChHHHhhhcceecCCcChhhhhhHHHHHHHHHHHh--hhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHH
Confidence 8864 46778999999998889999999999999988654 5677888999999999999999988766 588887
Q ss_pred ------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeCCHHH
Q 006897 211 ------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGSLEL 272 (627)
Q Consensus 211 ------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~ 272 (627)
||||||..+...+.+.++++.+ .|++||++||.++ |+..+|||+++|++|++++.|+.++
T Consensus 142 V~iARAlvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~-egr~viFSSH~m~-EvealCDrvivlh~Gevv~~gs~~~ 219 (245)
T COG4555 142 VAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKN-EGRAVIFSSHIMQ-EVEALCDRVIVLHKGEVVLEGSIEA 219 (245)
T ss_pred HHHHHHHhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhc-CCcEEEEecccHH-HHHHhhheEEEEecCcEEEcCCHHH
Confidence 9999999999999999999975 5999999999998 6999999999999999999999988
Q ss_pred HHHHH
Q 006897 273 LEETI 277 (627)
Q Consensus 273 ~~~~~ 277 (627)
+.+.-
T Consensus 220 l~~r~ 224 (245)
T COG4555 220 LDART 224 (245)
T ss_pred HHHHH
Confidence 76543
|
|
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-37 Score=328.99 Aligned_cols=202 Identities=22% Similarity=0.373 Sum_probs=175.7
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
+|+++||+++|+.+ ++.+++|+||||++++||+++|+||||||||||+|+|+|+++|++ |+|.++|
T Consensus 1 mI~~~~lsk~y~~~-----------~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~---G~I~i~G 66 (343)
T TIGR02314 1 MIKLSNITKVFHQG-----------TKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTS---GSVIVDG 66 (343)
T ss_pred CEEEEEEEEEECCC-----------CcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCc---eEEEECC
Confidence 48999999999421 123469999999999999999999999999999999999999864 9999999
Q ss_pred ccCCC--h---hhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccCC----cCCc
Q 006897 136 HQIKK--P---AQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAGS----FVGD 206 (627)
Q Consensus 136 ~~~~~--~---~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~----~~gG 206 (627)
+++.. . ...|++|||+||+..+++.+||+||+.++... .+.++++.++++.++++.+||.+..++ ++||
T Consensus 67 ~~i~~~~~~~l~~~r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~--~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgG 144 (343)
T TIGR02314 67 QDLTTLSNSELTKARRQIGMIFQHFNLLSSRTVFGNVALPLEL--DNTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGG 144 (343)
T ss_pred EECCcCCHHHHHHHhcCEEEEECCccccccCcHHHHHHHHHHH--cCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHH
Confidence 98743 2 23577899999999999999999999997643 234566778889999999999876664 5599
Q ss_pred cccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeC
Q 006897 207 EENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYG 268 (627)
Q Consensus 207 e~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G 268 (627)
|+|| ||++||+.++..++++|++++++.|.|||++||+++ .+.++||++++|++|++++.|
T Consensus 145 qkQRV~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~-~v~~~~d~v~vl~~G~iv~~g 223 (343)
T TIGR02314 145 QKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMD-VVKRICDCVAVISNGELIEQG 223 (343)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEc
Confidence 9999 999999999999999999998767999999999998 488999999999999999999
Q ss_pred CHHHHH
Q 006897 269 SLELLE 274 (627)
Q Consensus 269 ~~~~~~ 274 (627)
+++++.
T Consensus 224 ~~~~v~ 229 (343)
T TIGR02314 224 TVSEIF 229 (343)
T ss_pred CHHHHH
Confidence 998763
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-37 Score=330.04 Aligned_cols=199 Identities=18% Similarity=0.371 Sum_probs=177.0
Q ss_pred ceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEEC
Q 006897 55 CKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVN 134 (627)
Q Consensus 55 ~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~ 134 (627)
.+|+++||+++|. ++.+|+|+||++++||+++|+||||||||||||+|+|+.+|++ |+|.++
T Consensus 5 ~~l~~~~l~~~~~---------------~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~---G~I~~~ 66 (351)
T PRK11432 5 NFVVLKNITKRFG---------------SNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTE---GQIFID 66 (351)
T ss_pred cEEEEEeEEEEEC---------------CeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCc---eEEEEC
Confidence 3799999999993 3458999999999999999999999999999999999999864 999999
Q ss_pred CccCCChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccCC----cCCccccC
Q 006897 135 CHQIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAGS----FVGDEENR 210 (627)
Q Consensus 135 g~~~~~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~----~~gGe~qr 210 (627)
|+++......++.+|||||+..+||.+||+||+.|+.+.+ +.++++.+++++++++.+||.+..++ ++|||+||
T Consensus 67 g~~i~~~~~~~r~ig~vfQ~~~lfp~~tv~eNi~~~l~~~--~~~~~~~~~~v~~~l~~~gl~~~~~r~~~~LSgGq~QR 144 (351)
T PRK11432 67 GEDVTHRSIQQRDICMVFQSYALFPHMSLGENVGYGLKML--GVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQR 144 (351)
T ss_pred CEECCCCCHHHCCEEEEeCCcccCCCCCHHHHHHHHHhHc--CCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHH
Confidence 9987543334678999999999999999999999987543 34566778899999999999876654 45999999
Q ss_pred ------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeCCHHH
Q 006897 211 ------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGSLEL 272 (627)
Q Consensus 211 ------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~ 272 (627)
|+++||+..+.++.+.|+++.++.|+|+|++|||++ ++.++|||+++|++|+++..|++++
T Consensus 145 VaLARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-e~~~laD~i~vm~~G~i~~~g~~~~ 223 (351)
T PRK11432 145 VALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQS-EAFAVSDTVIVMNKGKIMQIGSPQE 223 (351)
T ss_pred HHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEECCEEEEEcCHHH
Confidence 999999999999999999998777999999999998 5899999999999999999999988
Q ss_pred HH
Q 006897 273 LE 274 (627)
Q Consensus 273 ~~ 274 (627)
+.
T Consensus 224 ~~ 225 (351)
T PRK11432 224 LY 225 (351)
T ss_pred HH
Confidence 74
|
|
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-37 Score=330.64 Aligned_cols=199 Identities=24% Similarity=0.434 Sum_probs=177.1
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
+|+++||+++|+ ++.+|+|+||++++||+++|+||||||||||||+|+|+.+|++ |+|.++|
T Consensus 4 ~l~~~~l~~~~~---------------~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~---G~I~i~g 65 (353)
T TIGR03265 4 YLSIDNIRKRFG---------------AFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTA---GTIYQGG 65 (353)
T ss_pred EEEEEEEEEEeC---------------CeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCc---eEEEECC
Confidence 699999999993 3458999999999999999999999999999999999999864 9999999
Q ss_pred ccCCChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccCC----cCCccccC-
Q 006897 136 HQIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAGS----FVGDEENR- 210 (627)
Q Consensus 136 ~~~~~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~----~~gGe~qr- 210 (627)
+++.+....++.+|||||+..+||.+||+||+.|+...+ +.++++.+++++++++.+||++..++ ++|||+||
T Consensus 66 ~~~~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~--~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRv 143 (353)
T TIGR03265 66 RDITRLPPQKRDYGIVFQSYALFPNLTVADNIAYGLKNR--GMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRV 143 (353)
T ss_pred EECCCCCHHHCCEEEEeCCcccCCCCcHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCCchhhCChhhCCHHHHHHH
Confidence 987543334678999999999999999999999986532 34566778899999999999877665 45999999
Q ss_pred -----------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeCCHHHH
Q 006897 211 -----------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGSLELL 273 (627)
Q Consensus 211 -----------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~ 273 (627)
|+++||+..+.++.+.|+++.++.|.|+|++|||++ ++.++|||+++|++|+++..|+++++
T Consensus 144 aLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~-ea~~l~d~i~vl~~G~i~~~g~~~~~ 222 (353)
T TIGR03265 144 ALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQE-EALSMADRIVVMNHGVIEQVGTPQEI 222 (353)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 999999999999999999998877999999999998 68999999999999999999999887
Q ss_pred HH
Q 006897 274 EE 275 (627)
Q Consensus 274 ~~ 275 (627)
.+
T Consensus 223 ~~ 224 (353)
T TIGR03265 223 YR 224 (353)
T ss_pred Hh
Confidence 53
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-37 Score=323.68 Aligned_cols=200 Identities=24% Similarity=0.385 Sum_probs=175.1
Q ss_pred ceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEEC
Q 006897 55 CKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVN 134 (627)
Q Consensus 55 ~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~ 134 (627)
.+|+++||+++|+ ++.+|+||||+|++||++||+||||||||||+|+|+|+++|++ |+|.++
T Consensus 6 ~~i~i~~l~k~~~---------------~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~---G~v~i~ 67 (306)
T PRK13537 6 APIDFRNVEKRYG---------------DKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDA---GSISLC 67 (306)
T ss_pred ceEEEEeEEEEEC---------------CeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCc---eEEEEC
Confidence 3799999999993 3469999999999999999999999999999999999999864 999999
Q ss_pred CccCCC-hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccCC----cCCcccc
Q 006897 135 CHQIKK-PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAGS----FVGDEEN 209 (627)
Q Consensus 135 g~~~~~-~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~----~~gGe~q 209 (627)
|+++.. ....++++||+||++.+++.+||+||+.+.+..+ +.+.++..++++++++.++|.+..++ ++|||+|
T Consensus 68 G~~~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~q 145 (306)
T PRK13537 68 GEPVPSRARHARQRVGVVPQFDNLDPDFTVRENLLVFGRYF--GLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKR 145 (306)
T ss_pred CEecccchHHHHhcEEEEeccCcCCCCCcHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHH
Confidence 998643 3456788999999999999999999999866443 33455666788999999999876554 5599999
Q ss_pred C------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeCCHH
Q 006897 210 R------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGSLE 271 (627)
Q Consensus 210 r------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~ 271 (627)
| ||+|||+.++..+.++|+++++ .|+|||++||+++ ++.++|||+++|++|++++.|+++
T Consensus 146 rl~la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~-~g~till~sH~l~-e~~~~~d~i~il~~G~i~~~g~~~ 223 (306)
T PRK13537 146 RLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLA-RGKTILLTTHFME-EAERLCDRLCVIEEGRKIAEGAPH 223 (306)
T ss_pred HHHHHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-CCCEEEEECCCHH-HHHHhCCEEEEEECCEEEEECCHH
Confidence 8 9999999999999999999975 5899999999998 689999999999999999999998
Q ss_pred HHHHH
Q 006897 272 LLEET 276 (627)
Q Consensus 272 ~~~~~ 276 (627)
++.+.
T Consensus 224 ~l~~~ 228 (306)
T PRK13537 224 ALIES 228 (306)
T ss_pred HHHhc
Confidence 88654
|
|
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-37 Score=329.89 Aligned_cols=199 Identities=21% Similarity=0.368 Sum_probs=175.7
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
+|+++||+++|+ +++.+|+|+||++++||+++|+||||||||||||+|+|+.+|++ |+|.++|
T Consensus 3 ~l~i~~l~~~~~--------------~~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~---G~I~~~g 65 (356)
T PRK11650 3 GLKLQAVRKSYD--------------GKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITS---GEIWIGG 65 (356)
T ss_pred EEEEEeEEEEeC--------------CCCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCc---eEEEECC
Confidence 689999999993 12459999999999999999999999999999999999999864 9999999
Q ss_pred ccCCChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccCC----cCCccccC-
Q 006897 136 HQIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAGS----FVGDEENR- 210 (627)
Q Consensus 136 ~~~~~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~----~~gGe~qr- 210 (627)
+++.+....++.+|||||++.+||.+||+||+.|+.+.+ +.++++.+++++++++.+||++..++ ++|||+||
T Consensus 66 ~~i~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~--~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~QRv 143 (356)
T PRK11650 66 RVVNELEPADRDIAMVFQNYALYPHMSVRENMAYGLKIR--GMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRV 143 (356)
T ss_pred EECCCCCHHHCCEEEEeCCccccCCCCHHHHHHhHHhhc--CCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHH
Confidence 987443334578999999999999999999999986432 34566677889999999999876654 56999999
Q ss_pred -----------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeCCHHHH
Q 006897 211 -----------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGSLELL 273 (627)
Q Consensus 211 -----------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~ 273 (627)
||++||+.++.++.+.|+++.++.|+|+|++|||++ ++.++||++++|++|+++..|+++++
T Consensus 144 alARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-ea~~l~D~i~vl~~G~i~~~g~~~~~ 222 (356)
T PRK11650 144 AMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQV-EAMTLADRVVVMNGGVAEQIGTPVEV 222 (356)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeCCEEEEECCHHHH
Confidence 999999999999999999998777999999999998 58999999999999999999999887
Q ss_pred H
Q 006897 274 E 274 (627)
Q Consensus 274 ~ 274 (627)
.
T Consensus 223 ~ 223 (356)
T PRK11650 223 Y 223 (356)
T ss_pred H
Confidence 4
|
|
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-37 Score=302.16 Aligned_cols=201 Identities=27% Similarity=0.415 Sum_probs=173.9
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
+|+++||++.|+.+. ...++|+||||+|++||++||+|+||||||||.++|+|+.+|+. |+|.++|
T Consensus 3 ~l~v~nl~~~y~~~~-----------~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~---G~I~~~G 68 (252)
T COG1124 3 LLSVRNLSIVYGGGK-----------FAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSS---GSILLDG 68 (252)
T ss_pred eEEEeceEEEecCCc-----------chhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCC---ceEEECC
Confidence 799999999996432 12369999999999999999999999999999999999999964 9999999
Q ss_pred ccCCC---hhhhcccEEEEccCC--CCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCcc-----ccCCcCC
Q 006897 136 HQIKK---PAQLRKICGFVAQED--NLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTH-----VAGSFVG 205 (627)
Q Consensus 136 ~~~~~---~~~~r~~ig~v~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-----~~~~~~g 205 (627)
++... .+.+++.|.+||||+ .+.|..||++.|.-+... .+.++ .++++.++|+.+||.+ ..++++|
T Consensus 69 ~~~~~~~~~~~~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~--~~~~~--~~~~i~~~L~~VgL~~~~l~R~P~eLSG 144 (252)
T COG1124 69 KPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRP--HGLSK--SQQRIAELLDQVGLPPSFLDRRPHELSG 144 (252)
T ss_pred cccCccccchhhccceeEEecCCccccCcchhHHHHHhhhhcc--CCccH--HHHHHHHHHHHcCCCHHHHhcCchhcCh
Confidence 87532 135678899999996 588999999999987643 23333 3445999999999964 4466779
Q ss_pred ccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEee
Q 006897 206 DEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHY 267 (627)
Q Consensus 206 Ge~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~ 267 (627)
||+|| |||+||+..+.+|+++|.+++++.|.|.|++|||++. +..+|||+++|++|++++.
T Consensus 145 GQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~-v~~~cdRi~Vm~~G~ivE~ 223 (252)
T COG1124 145 GQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLAL-VEHMCDRIAVMDNGQIVEI 223 (252)
T ss_pred hHHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHH-HHHHhhheeeeeCCeEEEe
Confidence 99999 9999999999999999999999999999999999995 8999999999999999999
Q ss_pred CCHHHHHH
Q 006897 268 GSLELLEE 275 (627)
Q Consensus 268 G~~~~~~~ 275 (627)
++.+++..
T Consensus 224 ~~~~~l~~ 231 (252)
T COG1124 224 GPTEELLS 231 (252)
T ss_pred echhhhhc
Confidence 99988754
|
|
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-37 Score=307.86 Aligned_cols=201 Identities=25% Similarity=0.453 Sum_probs=176.8
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
+++++|++|+|+++ ..+|+|+|+++++||.++|+||||||||||+++|+|+++|.. |.|.++|
T Consensus 3 ~i~~~~l~~~y~~~--------------~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~---G~v~~~g 65 (235)
T COG1122 3 MIEAENLSFRYPGR--------------KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTS---GEVLVDG 65 (235)
T ss_pred eEEEEEEEEEcCCC--------------ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCC---CEEEECC
Confidence 68999999999421 469999999999999999999999999999999999999974 9999999
Q ss_pred ccCCC---hhhhcccEEEEccCC-CCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccC----CcCCcc
Q 006897 136 HQIKK---PAQLRKICGFVAQED-NLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAG----SFVGDE 207 (627)
Q Consensus 136 ~~~~~---~~~~r~~ig~v~Q~~-~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~----~~~gGe 207 (627)
.++.. ..++|+++|||+|++ ..+..-||.|.++|+.. ..+.++++.+++++++++.+|+.+.++ +++|||
T Consensus 66 ~~~~~~~~~~~~~~~vG~VfQnpd~q~~~~tV~~evafg~~--n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGq 143 (235)
T COG1122 66 LDTSSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLE--NLGLPREEIEERVAEALELVGLEELLDRPPFNLSGGQ 143 (235)
T ss_pred eeccchhhHHHhhcceEEEEECcccccccCcHHHHHhhchh--hcCCCHHHHHHHHHHHHHHcCchhhccCCccccCCcc
Confidence 88542 467899999999996 23334599999999874 335677789999999999999987665 456999
Q ss_pred ccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeCC
Q 006897 208 ENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGS 269 (627)
Q Consensus 208 ~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~ 269 (627)
+|| ||+|||+.++.++++.++++.++.|+|+|++|||++ .+..+|||+++|++|+++.+|+
T Consensus 144 kqRvaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~-~~~~~ad~v~vl~~G~i~~~g~ 222 (235)
T COG1122 144 KQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLE-LVLEYADRVVVLDDGKILADGD 222 (235)
T ss_pred eeeHHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHH-HHHhhCCEEEEEECCEEeecCC
Confidence 999 999999999999999999998877899999999999 5899999999999999999999
Q ss_pred HHHHHHH
Q 006897 270 LELLEET 276 (627)
Q Consensus 270 ~~~~~~~ 276 (627)
++++.+.
T Consensus 223 p~~i~~~ 229 (235)
T COG1122 223 PAEIFND 229 (235)
T ss_pred HHHHhhh
Confidence 8877543
|
|
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-37 Score=295.09 Aligned_cols=199 Identities=25% Similarity=0.386 Sum_probs=172.7
Q ss_pred ceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCC--CccceEE
Q 006897 55 CKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQD--FDPRSIT 132 (627)
Q Consensus 55 ~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~--~~~G~i~ 132 (627)
..++++||++.| +++++|+|||++|++++++|+|||||||||||||++..+..... ...|+|.
T Consensus 6 ~~~~~~~l~~yY---------------g~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~ 70 (253)
T COG1117 6 PAIEVRDLNLYY---------------GDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVL 70 (253)
T ss_pred ceeEecceeEEE---------------CchhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEE
Confidence 368999999999 35679999999999999999999999999999999988765332 2359999
Q ss_pred ECCccCCC----hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCcc--------cc
Q 006897 133 VNCHQIKK----PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTH--------VA 200 (627)
Q Consensus 133 i~g~~~~~----~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~--------~~ 200 (627)
++|+++.+ ..++|++||+|||.+..|| +|++||+.|+.+++ +..+++.++.|++.|+...|-+ -+
T Consensus 71 ~~g~ni~~~~~d~~~lRr~vGMVFQkPnPFp-~SIydNVayG~r~~--g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa 147 (253)
T COG1117 71 LDGKNIYDPKVDVVELRRRVGMVFQKPNPFP-MSIYDNVAYGLRLH--GIKDKELDEIVESSLKKAALWDEVKDRLHKSA 147 (253)
T ss_pred ECCeeccCCCCCHHHHHHHheeeccCCCCCC-chHHHHHHHhHHhh--ccchHHHHHHHHHHHHHhHhHHHhHHHhhCCc
Confidence 99999843 4579999999999999999 79999999998664 4434788899999999988742 23
Q ss_pred CCcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCC
Q 006897 201 GSFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRG 262 (627)
Q Consensus 201 ~~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G 262 (627)
..++|||+|| |||+|||.+..+|-+++.+|++ .-|||+|||++.. +.+..|+..++..|
T Consensus 148 ~~LSGGQQQRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~--~yTIviVTHnmqQ-AaRvSD~taFf~~G 224 (253)
T COG1117 148 LGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKK--KYTIVIVTHNMQQ-AARVSDYTAFFYLG 224 (253)
T ss_pred cCCChhHHHHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHh--ccEEEEEeCCHHH-HHHHhHhhhhhccc
Confidence 3456999999 9999999999999999999974 5799999999995 89999999999999
Q ss_pred eEEeeCCHHHHH
Q 006897 263 SVVHYGSLELLE 274 (627)
Q Consensus 263 ~iv~~G~~~~~~ 274 (627)
++++.|+++++.
T Consensus 225 ~LvE~g~T~~iF 236 (253)
T COG1117 225 ELVEFGPTDKIF 236 (253)
T ss_pred EEEEEcCHHhhh
Confidence 999999998763
|
|
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-37 Score=327.22 Aligned_cols=199 Identities=22% Similarity=0.341 Sum_probs=176.0
Q ss_pred ceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEEC
Q 006897 55 CKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVN 134 (627)
Q Consensus 55 ~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~ 134 (627)
.+|+++||+++|+ ++.+|+|+||++++||+++|+|||||||||||++|+|+.+|++ |+|.++
T Consensus 13 ~~L~l~~l~~~~~---------------~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~---G~I~~~ 74 (375)
T PRK09452 13 PLVELRGISKSFD---------------GKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDS---GRIMLD 74 (375)
T ss_pred ceEEEEEEEEEEC---------------CeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCc---eEEEEC
Confidence 4799999999993 3458999999999999999999999999999999999999864 999999
Q ss_pred CccCCChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccCC----cCCccccC
Q 006897 135 CHQIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAGS----FVGDEENR 210 (627)
Q Consensus 135 g~~~~~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~----~~gGe~qr 210 (627)
|+++......++.+|||||++.+||.+||+||+.|+.+.+ +.++.+.+++++++++.+||++..++ ++|||+||
T Consensus 75 g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~p~~LSgGq~QR 152 (375)
T PRK09452 75 GQDITHVPAENRHVNTVFQSYALFPHMTVFENVAFGLRMQ--KTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQR 152 (375)
T ss_pred CEECCCCCHHHCCEEEEecCcccCCCCCHHHHHHHHHhhc--CCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHH
Confidence 9986443334578999999999999999999999986432 34556667889999999999876665 45999999
Q ss_pred ------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeCCHHH
Q 006897 211 ------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGSLEL 272 (627)
Q Consensus 211 ------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~ 272 (627)
|+++||+..+..+.+.|+++.++.|+|+|++|||++ ++..+|||+++|++|+++..|++++
T Consensus 153 VaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~-ea~~laDri~vl~~G~i~~~g~~~~ 231 (375)
T PRK09452 153 VAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQE-EALTMSDRIVVMRDGRIEQDGTPRE 231 (375)
T ss_pred HHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCHHH
Confidence 999999999999999999998877999999999998 5899999999999999999999988
Q ss_pred HH
Q 006897 273 LE 274 (627)
Q Consensus 273 ~~ 274 (627)
+.
T Consensus 232 i~ 233 (375)
T PRK09452 232 IY 233 (375)
T ss_pred HH
Confidence 74
|
|
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-37 Score=325.47 Aligned_cols=200 Identities=21% Similarity=0.385 Sum_probs=174.9
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
+|+++||+++|. ++.+|+|+||++++||+++|+||||||||||||+|+|+++|++ |+|.++|
T Consensus 2 ~L~i~~l~~~~~---------------~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~---G~I~i~g 63 (353)
T PRK10851 2 SIEIANIKKSFG---------------RTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTS---GHIRFHG 63 (353)
T ss_pred EEEEEEEEEEeC---------------CeEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---cEEEECC
Confidence 589999999993 2469999999999999999999999999999999999999864 9999999
Q ss_pred ccCCChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcC--CCCCHHHHHHHHHHHHHHcCCccccCC----cCCcccc
Q 006897 136 HQIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRL--KGMSHKEKEDRVESLMDELGLTHVAGS----FVGDEEN 209 (627)
Q Consensus 136 ~~~~~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~--~~~~~~~~~~~v~~~l~~lgL~~~~~~----~~gGe~q 209 (627)
+++......++.+|||||++.++|.+||+||+.|+..... .+.++++.+++++++++.+||++..++ ++|||+|
T Consensus 64 ~~i~~~~~~~r~i~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq~Q 143 (353)
T PRK10851 64 TDVSRLHARDRKVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQ 143 (353)
T ss_pred EECCCCCHHHCCEEEEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHH
Confidence 9864433345789999999999999999999999864321 123456677899999999999876654 5599999
Q ss_pred C------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeCCHH
Q 006897 210 R------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGSLE 271 (627)
Q Consensus 210 r------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~ 271 (627)
| ||+|||+.++.++.+.|+++.++.|+|+|++|||++ ++.++|||+++|++|++++.|+++
T Consensus 144 RvalArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~-ea~~~~Dri~vl~~G~i~~~g~~~ 222 (353)
T PRK10851 144 RVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQE-EAMEVADRVVVMSQGNIEQAGTPD 222 (353)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCHH
Confidence 9 999999999999999999998777899999999998 589999999999999999999998
Q ss_pred HHH
Q 006897 272 LLE 274 (627)
Q Consensus 272 ~~~ 274 (627)
++.
T Consensus 223 ~i~ 225 (353)
T PRK10851 223 QVW 225 (353)
T ss_pred HHH
Confidence 874
|
|
| >COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-37 Score=297.27 Aligned_cols=202 Identities=21% Similarity=0.444 Sum_probs=180.9
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
+|++++|+++| +++++++|+||++++|++++++|||||||||.+|+|.|++.|+. |+|.++|
T Consensus 2 ~L~ie~vtK~F---------------g~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~---G~I~~~g 63 (300)
T COG4152 2 ALEIEGVTKSF---------------GDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTE---GEITWNG 63 (300)
T ss_pred ceEEecchhcc---------------CceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccC---ceEEEcC
Confidence 58999999999 45679999999999999999999999999999999999999974 9999999
Q ss_pred ccCCChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccCCc----CCccccC-
Q 006897 136 HQIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAGSF----VGDEENR- 210 (627)
Q Consensus 136 ~~~~~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~----~gGe~qr- 210 (627)
.++. ...+.+|||+|.+..|+|.+||.|.|.|.+.+ +++++++.++++..+|+++++....... +-|.+|+
T Consensus 64 ~~~~--~~~~~rIGyLPEERGLy~k~tv~dql~yla~L--kGm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKI 139 (300)
T COG4152 64 GPLS--QEIKNRIGYLPEERGLYPKMTVEDQLKYLAEL--KGMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKI 139 (300)
T ss_pred cchh--hhhhhhcccChhhhccCccCcHHHHHHHHHHh--cCCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHH
Confidence 9853 45677899999999999999999999998865 5788999999999999999997665544 4555554
Q ss_pred -----------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeCCHHHH
Q 006897 211 -----------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGSLELL 273 (627)
Q Consensus 211 -----------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~ 273 (627)
|+|||||.+.+.+-+.+.++++ .|.|||++||.++ .+.++||++++|++|+.|.+|+.+++
T Consensus 140 QfisaviHePeLlILDEPFSGLDPVN~elLk~~I~~lk~-~GatIifSsH~Me-~vEeLCD~llmL~kG~~V~~G~v~~i 217 (300)
T COG4152 140 QFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKE-EGATIIFSSHRME-HVEELCDRLLMLKKGQTVLYGTVEDI 217 (300)
T ss_pred HHHHHHhcCCCEEEecCCccCCChhhHHHHHHHHHHHHh-cCCEEEEecchHH-HHHHHhhhhheecCCceEEeccHHHH
Confidence 9999999999999999999976 5999999999999 49999999999999999999999999
Q ss_pred HHHHHhcC
Q 006897 274 EETINNLG 281 (627)
Q Consensus 274 ~~~~~~~g 281 (627)
++.+....
T Consensus 218 r~~~Gkk~ 225 (300)
T COG4152 218 RRSFGKKR 225 (300)
T ss_pred HHhcCCce
Confidence 88765543
|
|
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-37 Score=286.74 Aligned_cols=196 Identities=22% Similarity=0.397 Sum_probs=171.3
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
+|.+++|.++|.. .==..+++|+.||++||+||||||||||||+|+|...|.+ |+|++||
T Consensus 1 ~l~L~~V~~~y~~-----------------~~~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~---G~i~i~g 60 (231)
T COG3840 1 MLALDDVRFSYGH-----------------LPMRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPAS---GEILING 60 (231)
T ss_pred CccccceEEeeCc-----------------ceEEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCC---ceEEEcC
Confidence 3678899999942 2356889999999999999999999999999999999974 9999999
Q ss_pred ccCCChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccCCc----CCccccC-
Q 006897 136 HQIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAGSF----VGDEENR- 210 (627)
Q Consensus 136 ~~~~~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~----~gGe~qr- 210 (627)
++.....-..|-++++||+.++|..+||.+|+.++..-.++ -.++.+++++.++.++||..+.+++ +||||||
T Consensus 61 ~d~t~~~P~~RPVSmlFQEnNLFaHLtV~qNigLGl~P~Lk--L~a~~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQRv 138 (231)
T COG3840 61 VDHTASPPAERPVSMLFQENNLFAHLTVAQNIGLGLSPGLK--LNAEQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRV 138 (231)
T ss_pred eecCcCCcccCChhhhhhccccchhhhhhhhhcccCCcccc--cCHHHHHHHHHHHHHhChhhHhhhCccccCchHHHHH
Confidence 99644444667899999999999999999999998532211 2356788999999999998776655 5999999
Q ss_pred -----------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeCCHHHH
Q 006897 211 -----------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGSLELL 273 (627)
Q Consensus 211 -----------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~ 273 (627)
|+|.|||.-+.++..++.+++++.+.|++|+||+++ ++.+++||++++++|+|.++|+.+++
T Consensus 139 ALARclvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~-Da~~ia~~~~fl~~Gri~~~g~~~~~ 217 (231)
T COG3840 139 ALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPE-DAARIADRVVFLDNGRIAAQGSTQEL 217 (231)
T ss_pred HHHHHHhccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHH-HHHHhhhceEEEeCCEEEeeccHHHH
Confidence 999999999999999999999999999999999999 69999999999999999999998776
Q ss_pred H
Q 006897 274 E 274 (627)
Q Consensus 274 ~ 274 (627)
.
T Consensus 218 ~ 218 (231)
T COG3840 218 L 218 (231)
T ss_pred h
Confidence 4
|
|
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-37 Score=324.60 Aligned_cols=201 Identities=23% Similarity=0.378 Sum_probs=175.8
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
.|+++||+++|+ ++.+|+|+||++++||+++|+|||||||||||++|+|+.+|++. .|+|.++|
T Consensus 5 ~l~~~~l~~~~~---------------~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~-~G~i~~~g 68 (362)
T TIGR03258 5 GIRIDHLRVAYG---------------ANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGL-TGRIAIAD 68 (362)
T ss_pred EEEEEEEEEEEC---------------CeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCC-CEEEEECC
Confidence 589999999993 24599999999999999999999999999999999999988532 29999999
Q ss_pred ccCCChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccCC----cCCccccC-
Q 006897 136 HQIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAGS----FVGDEENR- 210 (627)
Q Consensus 136 ~~~~~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~----~~gGe~qr- 210 (627)
+++.+....++.+|||+|+..+||.+||+||+.|+...+ +.++++.+++++++++.+||++..++ ++|||+||
T Consensus 69 ~~~~~~~~~~r~ig~vfQ~~~l~p~~tv~enl~~~l~~~--~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSgGq~QRv 146 (362)
T TIGR03258 69 RDLTHAPPHKRGLALLFQNYALFPHLKVEDNVAFGLRAQ--KMPKADIAERVADALKLVGLGDAAAHLPAQLSGGMQQRI 146 (362)
T ss_pred EECCCCCHHHCCEEEEECCcccCCCCcHHHHHHHHHHHc--CCCHHHHHHHHHHHHHhcCCCchhhCChhhCCHHHHHHH
Confidence 986433334678999999999999999999999986532 34566777889999999999877665 45999999
Q ss_pred -----------------CCCCCCHHHHHHHHHHHHHHHHcC-CCEEEEEccCccHHHHHHhhhheeecCCeEEeeCCHHH
Q 006897 211 -----------------GISGLDSTSALQVIELLASMAKAK-QRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGSLEL 272 (627)
Q Consensus 211 -----------------PtsgLD~~~~~~i~~~L~~l~~~~-g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~ 272 (627)
|++|||+..+.++.+.|+++.++. |+|+|++|||++ ++.++||||++|++|+++..|++++
T Consensus 147 aLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~-ea~~l~dri~vl~~G~i~~~g~~~~ 225 (362)
T TIGR03258 147 AIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQD-DALTLADKAGIMKDGRLAAHGEPQA 225 (362)
T ss_pred HHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCHHH
Confidence 999999999999999999998765 799999999998 5899999999999999999999988
Q ss_pred HHH
Q 006897 273 LEE 275 (627)
Q Consensus 273 ~~~ 275 (627)
+.+
T Consensus 226 ~~~ 228 (362)
T TIGR03258 226 LYD 228 (362)
T ss_pred HHh
Confidence 753
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-36 Score=320.89 Aligned_cols=201 Identities=26% Similarity=0.365 Sum_probs=175.1
Q ss_pred cceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEE
Q 006897 54 TCKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITV 133 (627)
Q Consensus 54 ~~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i 133 (627)
..+|+++||+++|+ ++.+|+||||+|++||++||+||||||||||+|+|+|+++|++ |+|.+
T Consensus 39 ~~~i~i~nl~k~y~---------------~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~---G~i~i 100 (340)
T PRK13536 39 TVAIDLAGVSKSYG---------------DKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDA---GKITV 100 (340)
T ss_pred ceeEEEEEEEEEEC---------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCc---eEEEE
Confidence 34799999999993 3469999999999999999999999999999999999999864 99999
Q ss_pred CCccCCC-hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccCC----cCCccc
Q 006897 134 NCHQIKK-PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAGS----FVGDEE 208 (627)
Q Consensus 134 ~g~~~~~-~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~----~~gGe~ 208 (627)
+|+++.. ....++.+||+||++.+++.+||.||+.+....+ +.+..+..++++++++.+||.+..++ ++|||+
T Consensus 101 ~G~~~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~--~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~k 178 (340)
T PRK13536 101 LGVPVPARARLARARIGVVPQFDNLDLEFTVRENLLVFGRYF--GMSTREIEAVIPSLLEFARLESKADARVSDLSGGMK 178 (340)
T ss_pred CCEECCcchHHHhccEEEEeCCccCCCCCcHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHcCCchhhCCChhhCCHHHH
Confidence 9998643 3456788999999999999999999999765433 23445566778899999999876654 569999
Q ss_pred cC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeCCH
Q 006897 209 NR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGSL 270 (627)
Q Consensus 209 qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~ 270 (627)
|| ||+|||+.++.+++++|+++++ .|+|||++||+++ ++.++||||++|++|++++.|++
T Consensus 179 qrv~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~-~g~tilisSH~l~-e~~~~~d~i~il~~G~i~~~g~~ 256 (340)
T PRK13536 179 RRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLA-RGKTILLTTHFME-EAERLCDRLCVLEAGRKIAEGRP 256 (340)
T ss_pred HHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEECCCHH-HHHHhCCEEEEEECCEEEEEcCH
Confidence 98 9999999999999999999976 5899999999998 68999999999999999999999
Q ss_pred HHHHHH
Q 006897 271 ELLEET 276 (627)
Q Consensus 271 ~~~~~~ 276 (627)
+++.+.
T Consensus 257 ~~l~~~ 262 (340)
T PRK13536 257 HALIDE 262 (340)
T ss_pred HHHHhh
Confidence 988654
|
|
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-36 Score=323.26 Aligned_cols=201 Identities=22% Similarity=0.359 Sum_probs=177.2
Q ss_pred cceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEE
Q 006897 54 TCKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITV 133 (627)
Q Consensus 54 ~~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i 133 (627)
..+|+++|++++|. ++.+|+|+||++++||+++|+||||||||||||+|+|+.+|+. |+|.+
T Consensus 17 ~~~l~l~~v~~~~~---------------~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~---G~I~i 78 (377)
T PRK11607 17 TPLLEIRNLTKSFD---------------GQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTA---GQIML 78 (377)
T ss_pred CceEEEEeEEEEEC---------------CEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCc---eEEEE
Confidence 34799999999993 2458999999999999999999999999999999999999864 99999
Q ss_pred CCccCCChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccCC----cCCcccc
Q 006897 134 NCHQIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAGS----FVGDEEN 209 (627)
Q Consensus 134 ~g~~~~~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~----~~gGe~q 209 (627)
+|+++.+....++.+|||||++.+||.+||.||+.|+.+.+ +.++++.++++.++++.+||.+..++ ++|||+|
T Consensus 79 ~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~--~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~LSgGq~Q 156 (377)
T PRK11607 79 DGVDLSHVPPYQRPINMMFQSYALFPHMTVEQNIAFGLKQD--KLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQ 156 (377)
T ss_pred CCEECCCCCHHHCCEEEEeCCCccCCCCCHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHH
Confidence 99986443345678999999999999999999999986432 33566777889999999999876654 5599999
Q ss_pred C------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeCCHH
Q 006897 210 R------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGSLE 271 (627)
Q Consensus 210 r------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~ 271 (627)
| |+++||+..+..+.+.|+++.++.|.|+|++|||++ ++..+|||+++|++|+++..|+++
T Consensus 157 RVaLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-ea~~laDri~vl~~G~i~~~g~~~ 235 (377)
T PRK11607 157 RVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQE-EAMTMAGRIAIMNRGKFVQIGEPE 235 (377)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEeCCEEEEEcCHH
Confidence 9 999999999999999999998777999999999998 689999999999999999999998
Q ss_pred HHHH
Q 006897 272 LLEE 275 (627)
Q Consensus 272 ~~~~ 275 (627)
++.+
T Consensus 236 ~~~~ 239 (377)
T PRK11607 236 EIYE 239 (377)
T ss_pred HHHh
Confidence 8753
|
|
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-36 Score=305.78 Aligned_cols=198 Identities=28% Similarity=0.443 Sum_probs=169.4
Q ss_pred EEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCc
Q 006897 57 VTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCH 136 (627)
Q Consensus 57 l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~ 136 (627)
|+++||+++|+ ++.+|+|+||++++||+++|+||||||||||+|+|+|+++|++ |+|.++|+
T Consensus 1 l~~~~l~~~~~---------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~---G~i~~~g~ 62 (235)
T cd03261 1 IELRGLTKSFG---------------GRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDS---GEVLIDGE 62 (235)
T ss_pred CeEEEEEEEEC---------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCc---eEEEECCE
Confidence 47899999993 2459999999999999999999999999999999999999864 99999998
Q ss_pred cCCC--h---hhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccC----CcCCcc
Q 006897 137 QIKK--P---AQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAG----SFVGDE 207 (627)
Q Consensus 137 ~~~~--~---~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~----~~~gGe 207 (627)
++.. . ..+++.++||+|++.+++.+||+||+.++.... ...++++..+++.++++.+||.+..+ .++|||
T Consensus 63 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~ 141 (235)
T cd03261 63 DISGLSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFPLREH-TRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGM 141 (235)
T ss_pred EccccChhhHHHHhcceEEEccCcccCCCCcHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHH
Confidence 8632 1 345778999999999999999999999875322 12344556678899999999976554 456999
Q ss_pred ccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeCC
Q 006897 208 ENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGS 269 (627)
Q Consensus 208 ~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~ 269 (627)
+|| ||+|||+.++..+++.|++++++.|+|||++|||++ ++.++||++++|++|++++.|+
T Consensus 142 ~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~-~~~~~~d~v~~l~~G~i~~~g~ 220 (235)
T cd03261 142 KKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLD-TAFAIADRIAVLYDGKIVAEGT 220 (235)
T ss_pred HHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhcCEEEEEECCeEEEecC
Confidence 999 999999999999999999997655899999999998 5888999999999999999999
Q ss_pred HHHHH
Q 006897 270 LELLE 274 (627)
Q Consensus 270 ~~~~~ 274 (627)
++++.
T Consensus 221 ~~~~~ 225 (235)
T cd03261 221 PEELR 225 (235)
T ss_pred HHHHc
Confidence 87653
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-37 Score=299.38 Aligned_cols=202 Identities=25% Similarity=0.383 Sum_probs=177.2
Q ss_pred ceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEEC
Q 006897 55 CKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVN 134 (627)
Q Consensus 55 ~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~ 134 (627)
..++++||+++| +..++++||||++++||+++||||||||||||+|+|+|.++|++ |+|.++
T Consensus 3 ~lL~v~~l~k~F---------------GGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~---G~v~~~ 64 (250)
T COG0411 3 PLLEVRGLSKRF---------------GGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSS---GTVIFR 64 (250)
T ss_pred ceeeeccceeec---------------CCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCC---ceEEEC
Confidence 368999999999 45679999999999999999999999999999999999999975 999999
Q ss_pred CccCCC--h-hhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcC--------CC--CCHHHHHHHHHHHHHHcCCccccC
Q 006897 135 CHQIKK--P-AQLRKICGFVAQEDNLLPLLTVKETLMFSANFRL--------KG--MSHKEKEDRVESLMDELGLTHVAG 201 (627)
Q Consensus 135 g~~~~~--~-~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~--------~~--~~~~~~~~~v~~~l~~lgL~~~~~ 201 (627)
|+++.. + +..|..++--||...+|++|||.||+..+...+. +. ...++..+++.++|+.+||.+.++
T Consensus 65 G~~it~l~p~~iar~Gi~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~ 144 (250)
T COG0411 65 GRDITGLPPHRIARLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELAD 144 (250)
T ss_pred CcccCCCCHHHHHhccceeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhc
Confidence 999843 2 3456779999999999999999999999864321 11 134667889999999999998877
Q ss_pred Cc----CCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheee
Q 006897 202 SF----VGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLIL 259 (627)
Q Consensus 202 ~~----~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL 259 (627)
+. ++|+++| |.+||.+....++.+.|+++.++.|.||++|.||++. +..+||||+||
T Consensus 145 ~~A~~LsyG~qR~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~-Vm~l~dri~Vl 223 (250)
T COG0411 145 RPAGNLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKL-VMGLADRIVVL 223 (250)
T ss_pred chhhcCChhHhHHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHH-HhhhccEEEec
Confidence 65 4677776 9999999999999999999998778999999999995 99999999999
Q ss_pred cCCeEEeeCCHHHHHH
Q 006897 260 SRGSVVHYGSLELLEE 275 (627)
Q Consensus 260 ~~G~iv~~G~~~~~~~ 275 (627)
+.|+++++|+|+++.+
T Consensus 224 ~~G~~IAeG~P~eV~~ 239 (250)
T COG0411 224 NYGEVIAEGTPEEVRN 239 (250)
T ss_pred cCCcCcccCCHHHHhc
Confidence 9999999999998864
|
|
| >COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-37 Score=292.28 Aligned_cols=201 Identities=25% Similarity=0.463 Sum_probs=178.5
Q ss_pred ceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEEC
Q 006897 55 CKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVN 134 (627)
Q Consensus 55 ~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~ 134 (627)
.+|.++||.|+|. ++++++||||++++||+++++|||||||||.+.++.|+.+|++ |.|.++
T Consensus 3 ~~L~a~~l~K~y~---------------kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~---G~i~ld 64 (243)
T COG1137 3 STLVAENLAKSYK---------------KRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDS---GKILLD 64 (243)
T ss_pred cEEEehhhhHhhC---------------CeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCC---ceEEEC
Confidence 3689999999993 4679999999999999999999999999999999999999975 999999
Q ss_pred CccCCC---hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccCC----cCCcc
Q 006897 135 CHQIKK---PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAGS----FVGDE 207 (627)
Q Consensus 135 g~~~~~---~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~----~~gGe 207 (627)
|.++.. ..+.|..|||+||++..|..+||+|||......+.....+.+.+++++++|++++|.+++++ ++|||
T Consensus 65 ~~diT~lPm~~RArlGigYLpQE~SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGE 144 (243)
T COG1137 65 DEDITKLPMHKRARLGIGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKAYSLSGGE 144 (243)
T ss_pred CcccccCChHHHhhcCcccccccchHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhcCcccccccch
Confidence 999854 24566789999999999999999999998877654333345667779999999999988764 56999
Q ss_pred ccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeCC
Q 006897 208 ENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGS 269 (627)
Q Consensus 208 ~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~ 269 (627)
|+| |++|.||.+..+|-++++.|++ .|..|+++-|+.. |...+|||.+++++|++.++|+
T Consensus 145 RRR~EIARaLa~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~-rgiGvLITDHNVR-EtL~i~dRaYIi~~G~vla~G~ 222 (243)
T COG1137 145 RRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKD-RGIGVLITDHNVR-ETLDICDRAYIISDGKVLAEGS 222 (243)
T ss_pred HHHHHHHHHHhcCCCEEEecCCccCCCchhHHHHHHHHHHHHh-CCceEEEccccHH-HHHhhhheEEEEecCeEEecCC
Confidence 998 9999999999999999999976 5999999999999 6899999999999999999999
Q ss_pred HHHHHH
Q 006897 270 LELLEE 275 (627)
Q Consensus 270 ~~~~~~ 275 (627)
++++.+
T Consensus 223 p~ei~~ 228 (243)
T COG1137 223 PEEIVN 228 (243)
T ss_pred HHHHhc
Confidence 998753
|
|
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-36 Score=321.89 Aligned_cols=198 Identities=27% Similarity=0.423 Sum_probs=173.6
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
.|+++||+++|+ ++.+|+|+||++++||+++|+||||||||||||+|+|+++|++ |+|.++|
T Consensus 3 ~l~i~~l~~~~~---------------~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~---G~I~~~g 64 (369)
T PRK11000 3 SVTLRNVTKAYG---------------DVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITS---GDLFIGE 64 (369)
T ss_pred EEEEEEEEEEeC---------------CeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCc---eEEEECC
Confidence 589999999993 2459999999999999999999999999999999999999864 9999999
Q ss_pred ccCCChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccCC----cCCccccC-
Q 006897 136 HQIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAGS----FVGDEENR- 210 (627)
Q Consensus 136 ~~~~~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~----~~gGe~qr- 210 (627)
+++......++.+|||+|+..+++.+||+||+.|+...+ +.++++.+++++++++.+||++..++ ++|||+||
T Consensus 65 ~~i~~~~~~~~~i~~v~Q~~~l~~~~tv~eni~~~~~~~--~~~~~~~~~~~~~~l~~lgL~~~~~~~~~~LSgGq~QRv 142 (369)
T PRK11000 65 KRMNDVPPAERGVGMVFQSYALYPHLSVAENMSFGLKLA--GAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRV 142 (369)
T ss_pred EECCCCCHhHCCEEEEeCCcccCCCCCHHHHHHhHHhhc--CCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHH
Confidence 986432334567999999999999999999999986432 23455667889999999999876554 56999999
Q ss_pred -----------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeCCHHHH
Q 006897 211 -----------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGSLELL 273 (627)
Q Consensus 211 -----------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~ 273 (627)
||+|||+.++..+.+.|+++.++.|+|+|++|||++ ++.++||++++|++|+++..|+++++
T Consensus 143 aLAraL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~-~~~~~~d~i~vl~~G~i~~~g~~~~i 221 (369)
T PRK11000 143 AIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV-EAMTLADKIVVLDAGRVAQVGKPLEL 221 (369)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 999999999999999999998766899999999998 58899999999999999999999887
Q ss_pred H
Q 006897 274 E 274 (627)
Q Consensus 274 ~ 274 (627)
.
T Consensus 222 ~ 222 (369)
T PRK11000 222 Y 222 (369)
T ss_pred H
Confidence 4
|
|
| >COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-37 Score=288.48 Aligned_cols=200 Identities=24% Similarity=0.411 Sum_probs=180.3
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
|++++||+|+| +++.+|+|+|++|++|.+++|+|||||||||||.+++.+++.++ |+|+++|
T Consensus 1 MI~i~nv~K~y---------------~~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~---G~i~i~g 62 (252)
T COG4604 1 MITIENVSKSY---------------GTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDS---GEITIDG 62 (252)
T ss_pred CeeehhhhHhh---------------CCEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccC---ceEEEee
Confidence 57899999999 45679999999999999999999999999999999999998864 9999999
Q ss_pred ccCCC--hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCcccc----CCcCCcccc
Q 006897 136 HQIKK--PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVA----GSFVGDEEN 209 (627)
Q Consensus 136 ~~~~~--~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~----~~~~gGe~q 209 (627)
.++.+ .+++.++++.+-|+.++-..+||+|-+.|+......+...++.+..++++++.++|+++. ++++|||||
T Consensus 63 ~~~~~~~s~~LAk~lSILkQ~N~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~dryLd~LSGGQrQ 142 (252)
T COG4604 63 LELTSTPSKELAKKLSILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRYLDELSGGQRQ 142 (252)
T ss_pred eecccCChHHHHHHHHHHHhhchhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchHHHhHHhcccchhh
Confidence 99843 467888999999999988899999999998543334555678889999999999998765 456799999
Q ss_pred C------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeCCHH
Q 006897 210 R------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGSLE 271 (627)
Q Consensus 210 r------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~ 271 (627)
| |+++||.+...++|+.|++++++.|+||+++.||.+. +..++|+|+-|++|+++..|+++
T Consensus 143 RAfIAMVlaQdTdyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINf-AS~YsD~IVAlK~G~vv~~G~~~ 221 (252)
T COG4604 143 RAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINF-ASCYSDHIVALKNGKVVKQGSPD 221 (252)
T ss_pred hhhhheeeeccCcEEEecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEecccH-HHhhhhheeeecCCEEEecCCHH
Confidence 9 9999999999999999999999999999999999996 78899999999999999999999
Q ss_pred HHH
Q 006897 272 LLE 274 (627)
Q Consensus 272 ~~~ 274 (627)
++.
T Consensus 222 eii 224 (252)
T COG4604 222 EII 224 (252)
T ss_pred Hhc
Confidence 874
|
|
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-36 Score=298.31 Aligned_cols=196 Identities=26% Similarity=0.448 Sum_probs=168.4
Q ss_pred EEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCc
Q 006897 57 VTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCH 136 (627)
Q Consensus 57 l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~ 136 (627)
|+++|++++|+ ++.+|+|+||++++||++||+||||||||||+|+|+|+++|++ |+|.++|.
T Consensus 1 i~~~~~~~~~~---------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~---G~i~~~g~ 62 (220)
T cd03265 1 IEVENLVKKYG---------------DFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTS---GRATVAGH 62 (220)
T ss_pred CEEEEEEEEEC---------------CEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCc---eEEEECCE
Confidence 47899999993 2469999999999999999999999999999999999998864 99999998
Q ss_pred cCCC-hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccC----CcCCccccC-
Q 006897 137 QIKK-PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAG----SFVGDEENR- 210 (627)
Q Consensus 137 ~~~~-~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~----~~~gGe~qr- 210 (627)
++.. ....++.++|++|++.+++.+||+||+.+....+ +...++.+++++++++.+||++..+ .++|||+||
T Consensus 63 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~ 140 (220)
T cd03265 63 DVVREPREVRRRIGIVFQDLSVDDELTGWENLYIHARLY--GVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRL 140 (220)
T ss_pred ecCcChHHHhhcEEEecCCccccccCcHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHH
Confidence 7532 2345678999999999999999999999875432 2334456678999999999976554 456999998
Q ss_pred -----------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeCCHHHH
Q 006897 211 -----------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGSLELL 273 (627)
Q Consensus 211 -----------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~ 273 (627)
||+|||+.++..+.+.|++++++.|+|||++||+++ ++.++||++++|++|++++.|+++++
T Consensus 141 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (220)
T cd03265 141 EIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYME-EAEQLCDRVAIIDHGRIIAEGTPEEL 219 (220)
T ss_pred HHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeCCEEEEeCChHHc
Confidence 999999999999999999998755899999999998 58889999999999999999887653
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-36 Score=316.53 Aligned_cols=202 Identities=25% Similarity=0.414 Sum_probs=173.3
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
+|+++||+++|+.+ +..+++|+|+||++++||+++|+||||||||||+|+|+|+++|++ |+|.++|
T Consensus 1 mi~i~~l~~~y~~~-----------~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~---G~I~~~g 66 (343)
T PRK11153 1 MIELKNISKVFPQG-----------GRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTS---GRVLVDG 66 (343)
T ss_pred CEEEEeEEEEeCCC-----------CCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCc---eEEEECC
Confidence 48999999999421 113569999999999999999999999999999999999999864 9999999
Q ss_pred ccCCC--h---hhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccC----CcCCc
Q 006897 136 HQIKK--P---AQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAG----SFVGD 206 (627)
Q Consensus 136 ~~~~~--~---~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~----~~~gG 206 (627)
+++.. . ...++.+|||||++.+++.+||+||+.++.... +.++++.+++++++++.+||++..+ +++||
T Consensus 67 ~~i~~~~~~~~~~~~~~ig~v~q~~~l~~~~tv~eni~~~~~~~--~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgG 144 (343)
T PRK11153 67 QDLTALSEKELRKARRQIGMIFQHFNLLSSRTVFDNVALPLELA--GTPKAEIKARVTELLELVGLSDKADRYPAQLSGG 144 (343)
T ss_pred EECCcCCHHHHHHHhcCEEEEeCCCccCCCCcHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHH
Confidence 88642 1 234678999999999999999999999876432 3345566778999999999987654 45699
Q ss_pred cccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeC
Q 006897 207 EENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYG 268 (627)
Q Consensus 207 e~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G 268 (627)
|+|| ||+|||+.++..+.+.|++++++.|+|||++||+++ ++.++||++++|++|++++.|
T Consensus 145 q~qRv~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~-~i~~~~d~v~~l~~G~i~~~g 223 (343)
T PRK11153 145 QKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMD-VVKRICDRVAVIDAGRLVEQG 223 (343)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEc
Confidence 9999 999999999999999999998766899999999998 588999999999999999999
Q ss_pred CHHHHH
Q 006897 269 SLELLE 274 (627)
Q Consensus 269 ~~~~~~ 274 (627)
+++++.
T Consensus 224 ~~~~~~ 229 (343)
T PRK11153 224 TVSEVF 229 (343)
T ss_pred CHHHHH
Confidence 988764
|
|
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=310.74 Aligned_cols=200 Identities=26% Similarity=0.376 Sum_probs=172.0
Q ss_pred ceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEEC
Q 006897 55 CKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVN 134 (627)
Q Consensus 55 ~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~ 134 (627)
.+|+++||+++|+ ++.+|+|+||++++||++||+||||||||||+|+|+|+++|++ |+|.++
T Consensus 3 ~~i~~~~l~~~~~---------------~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~---G~i~~~ 64 (303)
T TIGR01288 3 VAIDLVGVSKSYG---------------DKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDR---GKITVL 64 (303)
T ss_pred cEEEEEeEEEEeC---------------CeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCc---eEEEEC
Confidence 3799999999993 3459999999999999999999999999999999999998864 999999
Q ss_pred CccCCC-hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccC----CcCCcccc
Q 006897 135 CHQIKK-PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAG----SFVGDEEN 209 (627)
Q Consensus 135 g~~~~~-~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~----~~~gGe~q 209 (627)
|+++.. ....++.+||++|++.+++.+||+||+.+..... +.+.++.+++++++++.++|.+..+ .++|||+|
T Consensus 65 g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~--~~~~~~~~~~~~~ll~~~~l~~~~~~~~~~LSgG~~q 142 (303)
T TIGR01288 65 GEPVPSRARLARVAIGVVPQFDNLDPEFTVRENLLVFGRYF--GMSTREIEAVIPSLLEFARLESKADVRVALLSGGMKR 142 (303)
T ss_pred CEECcccHHHHhhcEEEEeccccCCcCCcHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHCCChhHhcCchhhCCHHHHH
Confidence 988532 2345778999999999999999999998754332 2344555667889999999976554 45699999
Q ss_pred C------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeCCHH
Q 006897 210 R------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGSLE 271 (627)
Q Consensus 210 r------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~ 271 (627)
| ||+|||+.++..+.+.|+++++ .|+|||++||+++ ++.++||++++|++|++++.|+++
T Consensus 143 rv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~-~g~til~~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~ 220 (303)
T TIGR01288 143 RLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLA-RGKTILLTTHFME-EAERLCDRLCVLESGRKIAEGRPH 220 (303)
T ss_pred HHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-CCCEEEEECCCHH-HHHHhCCEEEEEECCEEEEEcCHH
Confidence 9 9999999999999999999976 5899999999998 588999999999999999999998
Q ss_pred HHHHH
Q 006897 272 LLEET 276 (627)
Q Consensus 272 ~~~~~ 276 (627)
++.+.
T Consensus 221 ~~~~~ 225 (303)
T TIGR01288 221 ALIDE 225 (303)
T ss_pred HHHhh
Confidence 87543
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=300.76 Aligned_cols=200 Identities=23% Similarity=0.389 Sum_probs=168.5
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
+|+++||+++|+ ++.+|+|+||++++||+++|+||||||||||+|+|+|+++|++ |+|.++|
T Consensus 2 ~l~~~~l~~~~~---------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~---G~i~~~g 63 (239)
T cd03296 2 SIEVRNVSKRFG---------------DFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDS---GTILFGG 63 (239)
T ss_pred EEEEEeEEEEEC---------------CEEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCc---eEEEECC
Confidence 589999999993 2469999999999999999999999999999999999998864 9999999
Q ss_pred ccCCChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCC--CCCHHHHHHHHHHHHHHcCCccccC----CcCCcccc
Q 006897 136 HQIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLK--GMSHKEKEDRVESLMDELGLTHVAG----SFVGDEEN 209 (627)
Q Consensus 136 ~~~~~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~--~~~~~~~~~~v~~~l~~lgL~~~~~----~~~gGe~q 209 (627)
+++......++.++|++|++.+++.+||+||+.++...+.. ....++..++++++++.+||++..+ .++|||+|
T Consensus 64 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~q 143 (239)
T cd03296 64 EDATDVPVQERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQ 143 (239)
T ss_pred EECCcCCccccceEEEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHH
Confidence 88533222356799999999999889999999987533211 0123344567889999999976544 46699999
Q ss_pred C------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeCCHH
Q 006897 210 R------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGSLE 271 (627)
Q Consensus 210 r------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~ 271 (627)
| ||+|||+.++..+.+.|++++++.|+|||++||+++ ++.++||++++|++|++++.|+++
T Consensus 144 rl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~ 222 (239)
T cd03296 144 RVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQE-EALEVADRVVVMNKGRIEQVGTPD 222 (239)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEECCeEEEecCHH
Confidence 8 999999999999999999998755899999999998 488999999999999999999987
Q ss_pred HHH
Q 006897 272 LLE 274 (627)
Q Consensus 272 ~~~ 274 (627)
++.
T Consensus 223 ~~~ 225 (239)
T cd03296 223 EVY 225 (239)
T ss_pred HHh
Confidence 663
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-35 Score=301.31 Aligned_cols=206 Identities=25% Similarity=0.416 Sum_probs=176.9
Q ss_pred EEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC-C-CCCccceEEEC
Q 006897 57 VTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVR-D-QDFDPRSITVN 134 (627)
Q Consensus 57 l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~-~-~~~~~G~i~i~ 134 (627)
|+++||+..|.... +..++++||||++++||++||+|+|||||||+.+.|+|+++ + ....+|+|.++
T Consensus 2 L~v~nL~v~f~~~~-----------g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~ 70 (316)
T COG0444 2 LEVKNLSVSFPTDA-----------GVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFD 70 (316)
T ss_pred ceEeeeEEEEecCC-----------ccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEEC
Confidence 78999999995431 34679999999999999999999999999999999999997 4 33456999999
Q ss_pred CccCCC--hh---hhc-ccEEEEccCC--CCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCcc-------c
Q 006897 135 CHQIKK--PA---QLR-KICGFVAQED--NLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTH-------V 199 (627)
Q Consensus 135 g~~~~~--~~---~~r-~~ig~v~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-------~ 199 (627)
|+++.+ .+ ++| +.|+||||++ .|.|.+||.+.+.-....+.....+++..+++.++|+.+||.+ .
T Consensus 71 g~~l~~l~~~~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~Y 150 (316)
T COG0444 71 GKDLLSLSEKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSY 150 (316)
T ss_pred CcccccCCHHHHHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhC
Confidence 998743 22 333 5799999995 6889999999999887654321146678899999999999975 3
Q ss_pred cCCcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecC
Q 006897 200 AGSFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSR 261 (627)
Q Consensus 200 ~~~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~ 261 (627)
.++++||++|| ||++||...+.+|+++|++++++.|+|+|+||||+.. +.++||||+||..
T Consensus 151 PhelSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~v-va~~aDri~VMYa 229 (316)
T COG0444 151 PHELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGV-VAEIADRVAVMYA 229 (316)
T ss_pred CcccCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HHHhcceEEEEEC
Confidence 45677999999 9999999999999999999999899999999999995 8999999999999
Q ss_pred CeEEeeCCHHHHH
Q 006897 262 GSVVHYGSLELLE 274 (627)
Q Consensus 262 G~iv~~G~~~~~~ 274 (627)
|+||+.|+.+++.
T Consensus 230 G~iVE~g~~~~i~ 242 (316)
T COG0444 230 GRIVEEGPVEEIF 242 (316)
T ss_pred cEEEEeCCHHHHh
Confidence 9999999998774
|
|
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-36 Score=296.76 Aligned_cols=191 Identities=27% Similarity=0.478 Sum_probs=163.2
Q ss_pred EEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCc
Q 006897 57 VTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCH 136 (627)
Q Consensus 57 l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~ 136 (627)
|+++|++++|+ ++.+|+|+||++++||+++|+||||||||||+++|+|+++|++ |+|.++|+
T Consensus 1 l~~~~l~~~~~---------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~---G~i~~~g~ 62 (213)
T cd03259 1 LELKGLSKTYG---------------SVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDS---GEILIDGR 62 (213)
T ss_pred CeeeeeEEEeC---------------CeeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCC---eEEEECCE
Confidence 47899999993 2459999999999999999999999999999999999998864 99999998
Q ss_pred cCCChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccC----CcCCccccC--
Q 006897 137 QIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAG----SFVGDEENR-- 210 (627)
Q Consensus 137 ~~~~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~----~~~gGe~qr-- 210 (627)
++......++.++|++|++.+++.+|++||+.++.... +...++.+++++++++.+||++..+ .++|||+||
T Consensus 63 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~ 140 (213)
T cd03259 63 DVTGVPPERRNIGMVFQDYALFPHLTVAENIAFGLKLR--GVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVA 140 (213)
T ss_pred EcCcCchhhccEEEEcCchhhccCCcHHHHHHhHHHHc--CCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHH
Confidence 86432334568999999998998899999999865322 2234455677899999999976554 466999998
Q ss_pred ----------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeC
Q 006897 211 ----------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYG 268 (627)
Q Consensus 211 ----------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G 268 (627)
||+|||+.++..+.+.|++++++.|+|||++||+++ ++.++||++++|++|++++.|
T Consensus 141 la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 141 LARALAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQE-EALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhcCEEEEEECCEEEecC
Confidence 999999999999999999997656899999999998 488999999999999998765
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-35 Score=309.11 Aligned_cols=198 Identities=24% Similarity=0.447 Sum_probs=172.9
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
.++++|++++|+ ++.+|+|+||++++||++||+||||||||||+|+|+|+++|+. |+|.++|
T Consensus 2 ~l~~~~l~~~~~---------------~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~---G~i~i~g 63 (301)
T TIGR03522 2 SIRVSSLTKLYG---------------TQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDS---GSVQVCG 63 (301)
T ss_pred EEEEEEEEEEEC---------------CEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCc---eEEEECC
Confidence 489999999993 3469999999999999999999999999999999999999864 9999999
Q ss_pred ccCCC-hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccCC----cCCccccC
Q 006897 136 HQIKK-PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAGS----FVGDEENR 210 (627)
Q Consensus 136 ~~~~~-~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~----~~gGe~qr 210 (627)
+++.. ....++.+||+||++.+++.+||.||+.+.+.++ +.+.++..++++++++.+||++..++ ++|||+||
T Consensus 64 ~~~~~~~~~~~~~ig~~~q~~~l~~~~tv~e~l~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qr 141 (301)
T TIGR03522 64 EDVLQNPKEVQRNIGYLPEHNPLYLDMYVREYLQFIAGIY--GMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQR 141 (301)
T ss_pred EEcccChHHHHhceEEecCCCCCCCCCcHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHCCCchHhcCchhhCCHHHHHH
Confidence 88643 3456788999999999999999999999876543 33445566789999999999876654 45999998
Q ss_pred ------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeCCHHH
Q 006897 211 ------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGSLEL 272 (627)
Q Consensus 211 ------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~ 272 (627)
||+|||+.+++.+++.|++++ + ++|||++||+++ ++.++|||+++|++|++++.|+.++
T Consensus 142 v~la~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~-~-~~tiii~sH~l~-~~~~~~d~i~~l~~G~i~~~g~~~~ 218 (301)
T TIGR03522 142 VGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIG-K-DKTIILSTHIMQ-EVEAICDRVIIINKGKIVADKKLDE 218 (301)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhc-C-CCEEEEEcCCHH-HHHHhCCEEEEEECCEEEEeCCHHH
Confidence 999999999999999999985 3 699999999998 5899999999999999999999998
Q ss_pred HHHH
Q 006897 273 LEET 276 (627)
Q Consensus 273 ~~~~ 276 (627)
+...
T Consensus 219 ~~~~ 222 (301)
T TIGR03522 219 LSAA 222 (301)
T ss_pred HHHh
Confidence 7653
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-35 Score=311.41 Aligned_cols=214 Identities=23% Similarity=0.348 Sum_probs=175.0
Q ss_pred ceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEEC
Q 006897 55 CKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVN 134 (627)
Q Consensus 55 ~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~ 134 (627)
++|+++||+++|..+.... .+ ...++...+|+||||+|++||++||+|+||||||||+++|+|+++|++ |+|.++
T Consensus 7 ~~l~v~~l~~~~~~~~~~~-~~-~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~---G~I~~~ 81 (331)
T PRK15079 7 VLLEVADLKVHFDIKDGKQ-WF-WQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATD---GEVAWL 81 (331)
T ss_pred ceEEEeCeEEEECCCCccc-cc-cccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCC---cEEEEC
Confidence 4799999999995321000 00 001123569999999999999999999999999999999999998864 999999
Q ss_pred CccCCC--h---hhhcccEEEEccCC--CCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCc-ccc----CC
Q 006897 135 CHQIKK--P---AQLRKICGFVAQED--NLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLT-HVA----GS 202 (627)
Q Consensus 135 g~~~~~--~---~~~r~~ig~v~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~----~~ 202 (627)
|+++.+ . ..+++.++||+|++ .++|.+||.||+.+.......+.++++.++++.++++.+||. +.. +.
T Consensus 82 G~~i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~ 161 (331)
T PRK15079 82 GKDLLGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPHE 161 (331)
T ss_pred CEECCcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCccc
Confidence 998643 1 23567899999997 588899999999987543322245667778899999999994 333 45
Q ss_pred cCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeE
Q 006897 203 FVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSV 264 (627)
Q Consensus 203 ~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~i 264 (627)
++|||+|| ||+|||+.++.+++++|+++.++.|.|+|++|||++ .+.++|||+++|++|++
T Consensus 162 LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~-~~~~~~dri~vl~~G~i 240 (331)
T PRK15079 162 FSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLA-VVKHISDRVLVMYLGHA 240 (331)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEECCEE
Confidence 66999999 999999999999999999998767899999999998 48889999999999999
Q ss_pred EeeCCHHHHH
Q 006897 265 VHYGSLELLE 274 (627)
Q Consensus 265 v~~G~~~~~~ 274 (627)
++.|+++++.
T Consensus 241 ve~g~~~~i~ 250 (331)
T PRK15079 241 VELGTYDEVY 250 (331)
T ss_pred EEEcCHHHHH
Confidence 9999988764
|
|
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-35 Score=318.75 Aligned_cols=198 Identities=22% Similarity=0.377 Sum_probs=171.4
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
+|+++||+++|+ ++.+|+|+||++++||+++|+||||||||||||+|+|+++|.+ |+|.++|
T Consensus 3 ~L~~~nls~~y~---------------~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~s---G~I~l~G 64 (402)
T PRK09536 3 MIDVSDLSVEFG---------------DTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTA---GTVLVAG 64 (402)
T ss_pred eEEEeeEEEEEC---------------CEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCC---cEEEECC
Confidence 699999999993 3569999999999999999999999999999999999999864 9999999
Q ss_pred ccCCC--hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCC--CHHHHHHHHHHHHHHcCCccccCC----cCCcc
Q 006897 136 HQIKK--PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGM--SHKEKEDRVESLMDELGLTHVAGS----FVGDE 207 (627)
Q Consensus 136 ~~~~~--~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~--~~~~~~~~v~~~l~~lgL~~~~~~----~~gGe 207 (627)
+++.+ ..++++++|||+|++.+++.+||+||+.++...+.... ..++.+++++++++.+|+.+..++ ++|||
T Consensus 65 ~~i~~~~~~~~~~~ig~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~LSgGe 144 (402)
T PRK09536 65 DDVEALSARAASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGE 144 (402)
T ss_pred EEcCcCCHHHHhcceEEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCChhhCCHHH
Confidence 88643 35677889999999999888999999998642211111 134456789999999999876654 56999
Q ss_pred ccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeCC
Q 006897 208 ENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGS 269 (627)
Q Consensus 208 ~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~ 269 (627)
||| ||+|||+.++.+++++|+++++ .|+|||++|||++ ++.++|||+++|++|++++.|+
T Consensus 145 rQRv~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~-~g~TIIivsHdl~-~~~~~adrii~l~~G~iv~~G~ 222 (402)
T PRK09536 145 RQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVD-DGKTAVAAIHDLD-LAARYCDELVLLADGRVRAAGP 222 (402)
T ss_pred HHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHh-cCCEEEEEECCHH-HHHHhCCEEEEEECCEEEEecC
Confidence 999 9999999999999999999986 5899999999999 5889999999999999999999
Q ss_pred HHHH
Q 006897 270 LELL 273 (627)
Q Consensus 270 ~~~~ 273 (627)
++++
T Consensus 223 ~~ev 226 (402)
T PRK09536 223 PADV 226 (402)
T ss_pred HHHH
Confidence 9875
|
|
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-35 Score=297.76 Aligned_cols=202 Identities=27% Similarity=0.423 Sum_probs=170.0
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
+|+++|++++|+++. +.+++|+|+||++++||+++|+||||||||||+++|+|+++|++ |+|.++|
T Consensus 1 ~i~~~~l~~~~~~~~-----------~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g 66 (233)
T cd03258 1 MIELKNVSKVFGDTG-----------GKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTS---GSVLVDG 66 (233)
T ss_pred CeEEecceEEccCCC-----------CceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---ceEEECC
Confidence 478999999994210 11269999999999999999999999999999999999999864 9999999
Q ss_pred ccCCC--h---hhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccC----CcCCc
Q 006897 136 HQIKK--P---AQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAG----SFVGD 206 (627)
Q Consensus 136 ~~~~~--~---~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~----~~~gG 206 (627)
+++.. . ...++.++|++|++.+++.+|++||+.+....+ +...++..+++.++++.+||++..+ .++||
T Consensus 67 ~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G 144 (233)
T cd03258 67 TDLTLLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALPLEIA--GVPKAEIEERVLELLELVGLEDKADAYPAQLSGG 144 (233)
T ss_pred EEcccCCHHHHHHHHhheEEEccCcccCCCCcHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHCCChhhhhcChhhCCHH
Confidence 88632 1 134678999999999999899999999875432 2334455677899999999976554 45699
Q ss_pred cccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeC
Q 006897 207 EENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYG 268 (627)
Q Consensus 207 e~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G 268 (627)
|+|| ||+|||+.++..+.+.|++++++.|+|||++||+++ ++.++||++++|++|++++.|
T Consensus 145 ~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~-~~~~~~d~i~~l~~G~i~~~~ 223 (233)
T cd03258 145 QKQRVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEME-VVKRICDRVAVMEKGEVVEEG 223 (233)
T ss_pred HHHHHHHHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEec
Confidence 9998 999999999999999999997756899999999998 588899999999999999999
Q ss_pred CHHHHH
Q 006897 269 SLELLE 274 (627)
Q Consensus 269 ~~~~~~ 274 (627)
+++++.
T Consensus 224 ~~~~~~ 229 (233)
T cd03258 224 TVEEVF 229 (233)
T ss_pred CHHHHh
Confidence 887653
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-36 Score=282.36 Aligned_cols=199 Identities=27% Similarity=0.441 Sum_probs=171.6
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
+|+.+|||++. ..+++|++||+++++||++||+||||||||||||.|+|.+.|++ |++.+||
T Consensus 1 mi~a~nls~~~---------------~Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~---G~v~~~g 62 (259)
T COG4559 1 MIRAENLSYSL---------------AGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDS---GEVTLNG 62 (259)
T ss_pred CeeeeeeEEEe---------------ecceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCC---CeEeeCC
Confidence 58999999998 34679999999999999999999999999999999999999864 9999999
Q ss_pred ccCC--ChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccC----CcCCcccc
Q 006897 136 HQIK--KPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAG----SFVGDEEN 209 (627)
Q Consensus 136 ~~~~--~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~----~~~gGe~q 209 (627)
.++. .+.++.++-+.+||+..+-...||.|-+.++..-...+....+..+.++++|...++.+++. +++|||+|
T Consensus 63 ~~l~~~~~~~lA~~raVlpQ~s~laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~y~~LSGGEqQ 142 (259)
T COG4559 63 VPLNSWPPEELARHRAVLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDYRTLSGGEQQ 142 (259)
T ss_pred cChhhCCHHHHHHHhhhcccCcccccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhccchhhcCchHHH
Confidence 9874 35677788899999987644469999999986432222223355667899999999987765 45699999
Q ss_pred C------------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEE
Q 006897 210 R------------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVV 265 (627)
Q Consensus 210 r------------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv 265 (627)
| |||.||...+..++++.++++++ |..|++|.||++. ...+||||++|++||++
T Consensus 143 RVqlARvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~-g~~V~~VLHDLNL-AA~YaDrivll~~Grv~ 220 (259)
T COG4559 143 RVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLARE-GGAVLAVLHDLNL-AAQYADRIVLLHQGRVI 220 (259)
T ss_pred HHHHHHHHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhc-CCcEEEEEccchH-HHHhhheeeeeeCCeEe
Confidence 8 99999999999999999999986 7899999999996 78999999999999999
Q ss_pred eeCCHHHHH
Q 006897 266 HYGSLELLE 274 (627)
Q Consensus 266 ~~G~~~~~~ 274 (627)
..|+++++.
T Consensus 221 a~g~p~~vl 229 (259)
T COG4559 221 ASGSPQDVL 229 (259)
T ss_pred ecCCHHHhc
Confidence 999998874
|
|
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-35 Score=293.59 Aligned_cols=191 Identities=21% Similarity=0.397 Sum_probs=163.5
Q ss_pred EEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCc
Q 006897 57 VTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCH 136 (627)
Q Consensus 57 l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~ 136 (627)
|+++|++++|+ ++++|+|+||++++||+++|+||||||||||+++|+|+++|++ |+|.++|+
T Consensus 1 i~~~~l~~~~~---------------~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~---G~v~~~g~ 62 (213)
T cd03301 1 VELENVTKRFG---------------NVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTS---GRIYIGGR 62 (213)
T ss_pred CEEEeeEEEEC---------------CeeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCc---eEEEECCE
Confidence 47899999993 2459999999999999999999999999999999999998864 99999998
Q ss_pred cCCChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccC----CcCCccccC--
Q 006897 137 QIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAG----SFVGDEENR-- 210 (627)
Q Consensus 137 ~~~~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~----~~~gGe~qr-- 210 (627)
++......++.++|++|++.+++.+|++||+.++...+ +...++.+++++++++.+|+++..+ .++|||+||
T Consensus 63 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~ 140 (213)
T cd03301 63 DVTDLPPKDRDIAMVFQNYALYPHMTVYDNIAFGLKLR--KVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVA 140 (213)
T ss_pred ECCcCCcccceEEEEecChhhccCCCHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCHHHHhCChhhCCHHHHHHHH
Confidence 86432223467999999998988899999999875432 2344556678899999999976554 456999998
Q ss_pred ----------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeC
Q 006897 211 ----------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYG 268 (627)
Q Consensus 211 ----------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G 268 (627)
||+|||+.++..+.+.|++++++.|+|||++|||++ ++.++||++++|++|++++.|
T Consensus 141 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 141 LGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQV-EAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEEEEECCEEEecC
Confidence 999999999999999999998756899999999998 588899999999999999875
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-35 Score=303.32 Aligned_cols=204 Identities=22% Similarity=0.387 Sum_probs=170.5
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
.|+++||++.|+.+. ...+.+|+||||+|++||++||+||||||||||+++|+|+++|+. |+|.++|
T Consensus 2 ~l~~~~l~~~y~~~~----------~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~---G~i~~~g 68 (287)
T PRK13637 2 SIKIENLTHIYMEGT----------PFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTS---GKIIIDG 68 (287)
T ss_pred EEEEEEEEEECCCCC----------ccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCc---cEEEECC
Confidence 489999999994211 012469999999999999999999999999999999999999864 9999999
Q ss_pred ccCCC----hhhhcccEEEEccCCC-CCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCc--cccC----CcC
Q 006897 136 HQIKK----PAQLRKICGFVAQEDN-LLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLT--HVAG----SFV 204 (627)
Q Consensus 136 ~~~~~----~~~~r~~ig~v~Q~~~-l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~--~~~~----~~~ 204 (627)
+++.. ....++.+|||||++. .+...||+||+.++.... +.++++..++++++++.+||. +..+ .++
T Consensus 69 ~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~--~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LS 146 (287)
T PRK13637 69 VDITDKKVKLSDIRKKVGLVFQYPEYQLFEETIEKDIAFGPINL--GLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELS 146 (287)
T ss_pred EECCCcCccHHHHhhceEEEecCchhccccccHHHHHHhHHHHC--CCCHHHHHHHHHHHHHHcCCCchhhccCCcccCC
Confidence 88643 1356788999999863 233469999999875422 345666778899999999996 4444 456
Q ss_pred CccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEe
Q 006897 205 GDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVH 266 (627)
Q Consensus 205 gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~ 266 (627)
|||+|| ||+|||+.++.++.++|++++++.|+|||++|||++ ++.++|||+++|++|++++
T Consensus 147 gGq~qrv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~drv~~l~~G~i~~ 225 (287)
T PRK13637 147 GGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSME-DVAKLADRIIVMNKGKCEL 225 (287)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEE
Confidence 999999 999999999999999999998766899999999998 4788999999999999999
Q ss_pred eCCHHHHHH
Q 006897 267 YGSLELLEE 275 (627)
Q Consensus 267 ~G~~~~~~~ 275 (627)
.|+++++.+
T Consensus 226 ~g~~~~~~~ 234 (287)
T PRK13637 226 QGTPREVFK 234 (287)
T ss_pred ECCHHHHHh
Confidence 999988743
|
|
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-35 Score=304.42 Aligned_cols=216 Identities=22% Similarity=0.389 Sum_probs=176.8
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
+|+++||+++|+.+. ...+.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++ |+|.++|
T Consensus 1 mi~~~~v~~~y~~~~----------~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~---G~i~~~g 67 (288)
T PRK13643 1 MIKFEKVNYTYQPNS----------PFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTE---GKVTVGD 67 (288)
T ss_pred CEEEEEEEEEeCCCC----------cccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCC---cEEEECC
Confidence 489999999995221 012359999999999999999999999999999999999999864 9999999
Q ss_pred ccCCC------hhhhcccEEEEccCC--CCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCc-cccC----C
Q 006897 136 HQIKK------PAQLRKICGFVAQED--NLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLT-HVAG----S 202 (627)
Q Consensus 136 ~~~~~------~~~~r~~ig~v~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~----~ 202 (627)
.++.. ...+++.+|||+|++ .+++ .||.||+.|+.... +.++++.++++.++++.+||. +..+ .
T Consensus 68 ~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~-~tv~~~l~~~~~~~--~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~ 144 (288)
T PRK13643 68 IVVSSTSKQKEIKPVRKKVGVVFQFPESQLFE-ETVLKDVAFGPQNF--GIPKEKAEKIAAEKLEMVGLADEFWEKSPFE 144 (288)
T ss_pred EECccccccccHHHHHhhEEEEecCcchhccc-chHHHHHHhHHHHc--CCCHHHHHHHHHHHHHHcCCChhhccCCccc
Confidence 88631 234678899999986 5665 59999999876432 345566778899999999995 3443 4
Q ss_pred cCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeE
Q 006897 203 FVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSV 264 (627)
Q Consensus 203 ~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~i 264 (627)
++|||+|| ||+|||+.++..+.+.|+++++ .|+|||++|||++ ++.++||||++|++|++
T Consensus 145 LSgGqkqrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~-~g~til~vtHd~~-~~~~~~dri~~l~~G~i 222 (288)
T PRK13643 145 LSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQ-SGQTVVLVTHLMD-DVADYADYVYLLEKGHI 222 (288)
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCHH-HHHHhCCEEEEEECCEE
Confidence 56999998 9999999999999999999976 4899999999998 47889999999999999
Q ss_pred EeeCCHHHHH---HHHHhcCCCCCCCCC
Q 006897 265 VHYGSLELLE---ETINNLGYQIPTQLN 289 (627)
Q Consensus 265 v~~G~~~~~~---~~~~~~g~~~p~~~~ 289 (627)
++.|+++++. +.+...++.+|....
T Consensus 223 ~~~g~~~~~~~~~~~~~~~~~~~p~~~~ 250 (288)
T PRK13643 223 ISCGTPSDVFQEVDFLKAHELGVPKATH 250 (288)
T ss_pred EEECCHHHHHcCHHHHHHcCCCCChHHH
Confidence 9999998874 234456666665433
|
|
| >PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-35 Score=308.01 Aligned_cols=208 Identities=23% Similarity=0.345 Sum_probs=174.2
Q ss_pred cceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEE
Q 006897 54 TCKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITV 133 (627)
Q Consensus 54 ~~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i 133 (627)
..+|+++||++.|..+ ++...+|+||||+|++||++||+|+||||||||+++|+|+++|....+|+|.+
T Consensus 10 ~~~L~i~~l~~~~~~~-----------~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~ 78 (330)
T PRK09473 10 DALLDVKDLRVTFSTP-----------DGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATF 78 (330)
T ss_pred CceEEEeCeEEEEecC-----------CCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEE
Confidence 4479999999999532 12356999999999999999999999999999999999999885223599999
Q ss_pred CCccCCC--hhh---hc-ccEEEEccCC--CCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCcc-------
Q 006897 134 NCHQIKK--PAQ---LR-KICGFVAQED--NLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTH------- 198 (627)
Q Consensus 134 ~g~~~~~--~~~---~r-~~ig~v~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~------- 198 (627)
+|+++.. ..+ +| +.|+||||++ .++|.+|+.+++......+ .+.++++..+++.++|+.+||.+
T Consensus 79 ~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~-~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~ 157 (330)
T PRK09473 79 NGREILNLPEKELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLH-KGMSKAEAFEESVRMLDAVKMPEARKRMKM 157 (330)
T ss_pred CCEECCcCCHHHHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHcCCCChHHHhcC
Confidence 9998743 222 33 4799999997 6889999999998765432 12355666788999999999964
Q ss_pred ccCCcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeec
Q 006897 199 VAGSFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILS 260 (627)
Q Consensus 199 ~~~~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~ 260 (627)
..+.++|||+|| ||+|||+.++.+++++|++++++.|.|+|++|||++ .+.++|||+++|+
T Consensus 158 ~p~~LSgG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~-~~~~~~Dri~vm~ 236 (330)
T PRK09473 158 YPHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLG-VVAGICDKVLVMY 236 (330)
T ss_pred CcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHH-HHHHhCCEEEEEE
Confidence 234567999999 999999999999999999998777999999999998 4788999999999
Q ss_pred CCeEEeeCCHHHHH
Q 006897 261 RGSVVHYGSLELLE 274 (627)
Q Consensus 261 ~G~iv~~G~~~~~~ 274 (627)
+|++++.|+++++.
T Consensus 237 ~G~ive~g~~~~i~ 250 (330)
T PRK09473 237 AGRTMEYGNARDVF 250 (330)
T ss_pred CCEEEEECCHHHHH
Confidence 99999999998874
|
|
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-35 Score=300.87 Aligned_cols=200 Identities=22% Similarity=0.339 Sum_probs=169.7
Q ss_pred ceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEEC
Q 006897 55 CKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVN 134 (627)
Q Consensus 55 ~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~ 134 (627)
.+|+++||+++|+ ++.+|+|+||++++||+++|+||||||||||+++|+|+++|+. |+|.++
T Consensus 6 ~~l~~~~l~~~~~---------------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~---G~i~~~ 67 (269)
T PRK11831 6 NLVDMRGVSFTRG---------------NRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDH---GEILFD 67 (269)
T ss_pred ceEEEeCeEEEEC---------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---ceEEEC
Confidence 4799999999993 2459999999999999999999999999999999999998864 999999
Q ss_pred CccCCC--h---hhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccC----CcCC
Q 006897 135 CHQIKK--P---AQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAG----SFVG 205 (627)
Q Consensus 135 g~~~~~--~---~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~----~~~g 205 (627)
|+++.. . ...++.++|++|++.+++.+||.||+.++.... ...+.++.++++.++++.+||.+..+ .++|
T Consensus 68 g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~-~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSg 146 (269)
T PRK11831 68 GENIPAMSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVAYPLREH-TQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSG 146 (269)
T ss_pred CEEccccChhhHHHHhhcEEEEecccccCCCCCHHHHHHHHHHHc-cCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCH
Confidence 987632 1 124677999999999999899999999864321 11234445667889999999976544 4669
Q ss_pred ccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEee
Q 006897 206 DEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHY 267 (627)
Q Consensus 206 Ge~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~ 267 (627)
||+|| ||+|||+.++..+.+.|++++++.|+|||++|||++ ++.++||++++|++|++++.
T Consensus 147 Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~-~~~~~~d~v~~l~~G~i~~~ 225 (269)
T PRK11831 147 GMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVP-EVLSIADHAYIVADKKIVAH 225 (269)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhhCEEEEEECCEEEEe
Confidence 99998 999999999999999999997656899999999998 58899999999999999999
Q ss_pred CCHHHHH
Q 006897 268 GSLELLE 274 (627)
Q Consensus 268 G~~~~~~ 274 (627)
|+++++.
T Consensus 226 g~~~~~~ 232 (269)
T PRK11831 226 GSAQALQ 232 (269)
T ss_pred CCHHHHh
Confidence 9987663
|
|
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-35 Score=312.60 Aligned_cols=186 Identities=22% Similarity=0.386 Sum_probs=165.1
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCccCCC--hhhh----cccEEEEccCCC
Q 006897 83 PLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKK--PAQL----RKICGFVAQEDN 156 (627)
Q Consensus 83 ~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~~~~--~~~~----r~~ig~v~Q~~~ 156 (627)
.+.+|+|+||+|++||+++|+||||||||||||+|+|+++|++ |+|.++|+++.. ..++ ++.+|||+|++.
T Consensus 5 ~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~---G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~ 81 (363)
T TIGR01186 5 GKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTA---GQIFIDGENIMKQSPVELREVRRKKIGMVFQQFA 81 (363)
T ss_pred CceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCc---eEEEECCEECCcCCHHHHHHHHhCcEEEEECCCc
Confidence 4569999999999999999999999999999999999999964 999999998743 3334 678999999999
Q ss_pred CCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccCC----cCCccccC------------------CCCC
Q 006897 157 LLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAGS----FVGDEENR------------------GISG 214 (627)
Q Consensus 157 l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~----~~gGe~qr------------------Ptsg 214 (627)
++|.+||+||+.++.... +.++++..+++.++++.+||++..++ ++|||+|| |+++
T Consensus 82 l~~~~TV~eNi~~~~~~~--~~~~~~~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP~sa 159 (363)
T TIGR01186 82 LFPHMTILQNTSLGPELL--GWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSA 159 (363)
T ss_pred CCCCCCHHHHHHHHHHHc--CCCHHHHHHHHHHHHHhcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence 999999999999986542 34566778899999999999876655 45999999 9999
Q ss_pred CCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeCCHHHHH
Q 006897 215 LDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGSLELLE 274 (627)
Q Consensus 215 LD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~ 274 (627)
||+.++..+.+.|++++++.|+|||++|||++ ++.++||||++|++|+++..|+++++.
T Consensus 160 LD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~-ea~~~~drI~vl~~G~iv~~g~~~ei~ 218 (363)
T TIGR01186 160 LDPLIRDSMQDELKKLQATLQKTIVFITHDLD-EAIRIGDRIVIMKAGEIVQVGTPDEIL 218 (363)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeCCEEEeeCCHHHHH
Confidence 99999999999999998767899999999998 588999999999999999999998874
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-35 Score=296.82 Aligned_cols=201 Identities=32% Similarity=0.469 Sum_probs=167.5
Q ss_pred EEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCc
Q 006897 57 VTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCH 136 (627)
Q Consensus 57 l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~ 136 (627)
|+++||+++|++ ++.+|+|+||++++||+++|+||||||||||+++|+|+++|++ |+|.++|+
T Consensus 1 l~~~~l~~~~~~--------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~---G~i~~~g~ 63 (241)
T cd03256 1 IEVENLSKTYPN--------------GKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTS---GSVLIDGT 63 (241)
T ss_pred CEEeeEEEecCC--------------ccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCC---ceEEECCE
Confidence 478999999931 1469999999999999999999999999999999999998864 99999998
Q ss_pred cCCC-----hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhc------CCCCCHHHHHHHHHHHHHHcCCccccC----
Q 006897 137 QIKK-----PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFR------LKGMSHKEKEDRVESLMDELGLTHVAG---- 201 (627)
Q Consensus 137 ~~~~-----~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~------~~~~~~~~~~~~v~~~l~~lgL~~~~~---- 201 (627)
++.. ....++.++|++|++.+++.+||+||+.++.... ..+...++..+++.++++.+||.+..+
T Consensus 64 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 143 (241)
T cd03256 64 DINKLKGKALRQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRAD 143 (241)
T ss_pred eccccCHhHHHHHHhccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCcc
Confidence 8632 2345678999999999999899999998753210 001112344567889999999976544
Q ss_pred CcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCe
Q 006897 202 SFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGS 263 (627)
Q Consensus 202 ~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~ 263 (627)
.++|||+|| ||+|||+.++..+.+.|++++++.|+|||++|||++ ++.++||++++|++|+
T Consensus 144 ~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~-~~~~~~d~v~~l~~G~ 222 (241)
T cd03256 144 QLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVD-LAREYADRIVGLKDGR 222 (241)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCE
Confidence 466999998 999999999999999999998666899999999998 4888999999999999
Q ss_pred EEeeCCHHHHHH
Q 006897 264 VVHYGSLELLEE 275 (627)
Q Consensus 264 iv~~G~~~~~~~ 275 (627)
+++.|+++++.+
T Consensus 223 i~~~~~~~~~~~ 234 (241)
T cd03256 223 IVFDGPPAELTD 234 (241)
T ss_pred EEeecCHHHhhH
Confidence 999999887643
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-35 Score=301.10 Aligned_cols=200 Identities=24% Similarity=0.414 Sum_probs=170.6
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
+|+++||+++|+.. +.+.+|+|+||+|++||++||+||||||||||+++|+|+++|+. |+|.++|
T Consensus 4 ~l~~~~l~~~~~~~------------~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~---G~i~~~g 68 (279)
T PRK13650 4 IIEVKNLTFKYKED------------QEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAES---GQIIIDG 68 (279)
T ss_pred eEEEEeEEEEcCCC------------CcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCC---cEEEECC
Confidence 68999999999421 12359999999999999999999999999999999999999864 9999999
Q ss_pred ccCCC--hhhhcccEEEEccCC-CCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccC----CcCCccc
Q 006897 136 HQIKK--PAQLRKICGFVAQED-NLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAG----SFVGDEE 208 (627)
Q Consensus 136 ~~~~~--~~~~r~~ig~v~Q~~-~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~----~~~gGe~ 208 (627)
+++.. ...+++.+|||+|++ .+++.+||+||+.++... .+.++++..++++++++.+||++..+ .++|||+
T Consensus 69 ~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~--~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~ 146 (279)
T PRK13650 69 DLLTEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLEN--KGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQK 146 (279)
T ss_pred EECCcCcHHHHHhhceEEEcChHHhcccccHHHHHHhhHHh--CCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHH
Confidence 98632 345677899999997 366678999999987532 23455666788999999999987654 4569999
Q ss_pred cC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeCCH
Q 006897 209 NR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGSL 270 (627)
Q Consensus 209 qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~ 270 (627)
|| ||+|||+.++..+++.|++++++.|+|||++||+++ ++ ..|||+++|++|+++..|++
T Consensus 147 qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~-~~-~~~dri~~l~~G~i~~~g~~ 224 (279)
T PRK13650 147 QRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLD-EV-ALSDRVLVMKNGQVESTSTP 224 (279)
T ss_pred HHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HH-HhCCEEEEEECCEEEEECCH
Confidence 98 999999999999999999998766899999999998 46 58999999999999999999
Q ss_pred HHHH
Q 006897 271 ELLE 274 (627)
Q Consensus 271 ~~~~ 274 (627)
+++.
T Consensus 225 ~~~~ 228 (279)
T PRK13650 225 RELF 228 (279)
T ss_pred HHHH
Confidence 8764
|
|
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-35 Score=294.63 Aligned_cols=198 Identities=28% Similarity=0.459 Sum_probs=166.7
Q ss_pred EEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCc
Q 006897 57 VTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCH 136 (627)
Q Consensus 57 l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~ 136 (627)
|+++||+++|+ ++.+|+|+||++++||+++|+||||||||||+++|+|+++|++ |+|.++|+
T Consensus 1 l~~~~l~~~~~---------------~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~---G~i~~~g~ 62 (236)
T cd03219 1 LEVRGLTKRFG---------------GLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTS---GSVLFDGE 62 (236)
T ss_pred CeeeeeEEEEC---------------CEEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCC---ceEEECCE
Confidence 46899999993 2359999999999999999999999999999999999998864 99999998
Q ss_pred cCCC--hhh-hcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCC--------CCHHHHHHHHHHHHHHcCCccccC----
Q 006897 137 QIKK--PAQ-LRKICGFVAQEDNLLPLLTVKETLMFSANFRLKG--------MSHKEKEDRVESLMDELGLTHVAG---- 201 (627)
Q Consensus 137 ~~~~--~~~-~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~--------~~~~~~~~~v~~~l~~lgL~~~~~---- 201 (627)
++.. ... .++.++|++|++.+++.+||+||+.+........ ...++..++++++++.+||++..+
T Consensus 63 ~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 142 (236)
T cd03219 63 DITGLPPHEIARLGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPAG 142 (236)
T ss_pred ECCCCCHHHHHhcCEEEEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCChh
Confidence 8632 122 3467999999999999999999999875432110 013445667899999999976554
Q ss_pred CcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCe
Q 006897 202 SFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGS 263 (627)
Q Consensus 202 ~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~ 263 (627)
.++|||+|| ||+|||+.++..+.+.|+++++ .|+|||++|||++ ++.++||++++|++|+
T Consensus 143 ~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~vsH~~~-~~~~~~d~i~~l~~G~ 220 (236)
T cd03219 143 ELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRE-RGITVLLVEHDMD-VVMSLADRVTVLDQGR 220 (236)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEecCHH-HHHHhCCEEEEEeCCE
Confidence 456999998 9999999999999999999976 5899999999998 5889999999999999
Q ss_pred EEeeCCHHHHH
Q 006897 264 VVHYGSLELLE 274 (627)
Q Consensus 264 iv~~G~~~~~~ 274 (627)
+++.|+++++.
T Consensus 221 i~~~~~~~~~~ 231 (236)
T cd03219 221 VIAEGTPDEVR 231 (236)
T ss_pred EEeecCHHHhc
Confidence 99999987663
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=304.30 Aligned_cols=215 Identities=21% Similarity=0.378 Sum_probs=175.0
Q ss_pred cceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEE
Q 006897 54 TCKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITV 133 (627)
Q Consensus 54 ~~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i 133 (627)
..+|+++||++.|+... ...+.+|+||||+|++||++||+||||||||||+++|+|+++|++ |+|.+
T Consensus 19 ~~~l~~~nl~~~y~~~~----------~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~---G~I~i 85 (320)
T PRK13631 19 DIILRVKNLYCVFDEKQ----------ENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKY---GTIQV 85 (320)
T ss_pred CceEEEEeEEEEeCCCC----------cccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---CeEEE
Confidence 45799999999995321 012459999999999999999999999999999999999999864 99999
Q ss_pred CCccCCC------------------hhhhcccEEEEccCC--CCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Q 006897 134 NCHQIKK------------------PAQLRKICGFVAQED--NLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDE 193 (627)
Q Consensus 134 ~g~~~~~------------------~~~~r~~ig~v~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~ 193 (627)
+|.++.+ ...+++.+|||+|++ .+++ .||+||+.++.... +.+.++..+++.++++.
T Consensus 86 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~-~tv~eni~~~~~~~--~~~~~~~~~~~~~~l~~ 162 (320)
T PRK13631 86 GDIYIGDKKNNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFK-DTIEKDIMFGPVAL--GVKKSEAKKLAKFYLNK 162 (320)
T ss_pred CCEEcccccccccccccccccccchHHHHHhcEEEEEECchhcccc-chHHHHHHhhHHhc--CCCHHHHHHHHHHHHHH
Confidence 9977522 235678899999986 5666 49999999875321 23455666789999999
Q ss_pred cCCc-cccC----CcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHH
Q 006897 194 LGLT-HVAG----SFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRIL 250 (627)
Q Consensus 194 lgL~-~~~~----~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~ 250 (627)
+||+ +..+ .++|||+|| ||+|||+.++..+++.|+++++ +|+|||++|||++ ++.
T Consensus 163 ~gL~~~~~~~~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~-~g~TiiivtHd~~-~~~ 240 (320)
T PRK13631 163 MGLDDSYLERSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKA-NNKTVFVITHTME-HVL 240 (320)
T ss_pred cCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCHH-HHH
Confidence 9996 4443 466999999 9999999999999999999975 4899999999998 478
Q ss_pred HHhhhheeecCCeEEeeCCHHHHH---HHHHhcCCCCCC
Q 006897 251 QYISKFLILSRGSVVHYGSLELLE---ETINNLGYQIPT 286 (627)
Q Consensus 251 ~~~D~i~vL~~G~iv~~G~~~~~~---~~~~~~g~~~p~ 286 (627)
++|||+++|++|++++.|+++++. +.+...+...|.
T Consensus 241 ~~adri~vl~~G~i~~~g~~~~~~~~~~~~~~~~~~~p~ 279 (320)
T PRK13631 241 EVADEVIVMDKGKILKTGTPYEIFTDQHIINSTSIQVPR 279 (320)
T ss_pred HhCCEEEEEECCEEEEeCCHHHHhcCHHHHHHcCCCCCh
Confidence 899999999999999999998764 233445555443
|
|
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-35 Score=292.05 Aligned_cols=189 Identities=25% Similarity=0.425 Sum_probs=160.4
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
+|+++|++++|+. +.+.+|+|+||++++||+++|+||||||||||+|+|+|+++|++ |+|.++|
T Consensus 1 ~l~~~~l~~~~~~-------------~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~---G~i~~~g 64 (216)
T TIGR00960 1 MIRFEQVSKAYPG-------------GHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTR---GKIRFNG 64 (216)
T ss_pred CeEEEEEEEEecC-------------CCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCc---eEEEECC
Confidence 4789999999942 12359999999999999999999999999999999999998864 9999999
Q ss_pred ccCCC--h---hhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccC----CcCCc
Q 006897 136 HQIKK--P---AQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAG----SFVGD 206 (627)
Q Consensus 136 ~~~~~--~---~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~----~~~gG 206 (627)
+++.. . ..+++.++|++|++.+++.+||.||+.++...+ +...++.++++.++++.+||++..+ .++||
T Consensus 65 ~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG 142 (216)
T TIGR00960 65 QDLTRLRGREIPFLRRHIGMVFQDHRLLSDRTVYDNVAFPLRII--GVPPRDANERVSAALEKVGLEGKAHALPMQLSGG 142 (216)
T ss_pred EehhhcChhHHHHHHHhceEEecCccccccccHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHH
Confidence 87632 1 235678999999999999899999999875432 2234455678999999999976554 45699
Q ss_pred cccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeE
Q 006897 207 EENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSV 264 (627)
Q Consensus 207 e~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~i 264 (627)
|+|| ||+|||+.++..+.+.|+++++ .|+|||++|||++ ++.++||++++|++|++
T Consensus 143 ~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~vsH~~~-~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 143 EQQRVAIARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNR-RGTTVLVATHDIN-LVETYRHRTLTLSRGRL 216 (216)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCHH-HHHHhCCEEEEEeCCcC
Confidence 9999 9999999999999999999975 4899999999998 47889999999999975
|
|
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-35 Score=306.06 Aligned_cols=187 Identities=22% Similarity=0.443 Sum_probs=163.6
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCccCCC-hhhhcccEEEEccCCCCCCCCC
Q 006897 84 LHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKK-PAQLRKICGFVAQEDNLLPLLT 162 (627)
Q Consensus 84 ~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~~~~-~~~~r~~ig~v~Q~~~l~~~lT 162 (627)
+.+|+|+||+|++||++||+||||||||||+|+|+|+++|++ |+|.++|+++.. ....++.+||+||++.+++.+|
T Consensus 6 ~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~---G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~t 82 (302)
T TIGR01188 6 FKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTS---GTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLT 82 (302)
T ss_pred eeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCc---eEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCc
Confidence 469999999999999999999999999999999999999864 999999988633 3456778999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccCC----cCCccccC------------------CCCCCCHHHH
Q 006897 163 VKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAGS----FVGDEENR------------------GISGLDSTSA 220 (627)
Q Consensus 163 V~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~----~~gGe~qr------------------PtsgLD~~~~ 220 (627)
|+||+.+.+..+ +.+.++.+++++++++.+||.+..++ ++|||+|| ||+|||+.++
T Consensus 83 v~e~l~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~ 160 (302)
T TIGR01188 83 GRENLEMMGRLY--GLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTR 160 (302)
T ss_pred HHHHHHHHHHHc--CCCHHHHHHHHHHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHH
Confidence 999999876443 33445566789999999999766554 56999999 9999999999
Q ss_pred HHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeCCHHHHHHHH
Q 006897 221 LQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGSLELLEETI 277 (627)
Q Consensus 221 ~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~~~~ 277 (627)
..+++.|+++++ .|+|||++||+++ ++.++||++++|++|++++.|+++++.+..
T Consensus 161 ~~l~~~l~~~~~-~g~tvi~~sH~~~-~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~ 215 (302)
T TIGR01188 161 RAIWDYIRALKE-EGVTILLTTHYME-EADKLCDRIAIIDHGRIIAEGTPEELKRRL 215 (302)
T ss_pred HHHHHHHHHHHh-CCCEEEEECCCHH-HHHHhCCEEEEEECCEEEEECCHHHHHHhc
Confidence 999999999976 4899999999998 588999999999999999999998876543
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-35 Score=294.68 Aligned_cols=198 Identities=21% Similarity=0.430 Sum_probs=168.8
Q ss_pred EEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCc
Q 006897 57 VTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCH 136 (627)
Q Consensus 57 l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~ 136 (627)
++++||+++|++ .+.+|+|+||++++||+++|+||||||||||+++|+|+++|++ |+|.++|+
T Consensus 1 l~~~~l~~~~~~--------------~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g~ 63 (242)
T cd03295 1 IEFENVTKRYGG--------------GKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTS---GEIFIDGE 63 (242)
T ss_pred CEEEEEEEEeCC--------------cceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCC---ceEEECCe
Confidence 468999999941 1459999999999999999999999999999999999998864 99999998
Q ss_pred cCCC--hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCcc--ccC----CcCCccc
Q 006897 137 QIKK--PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTH--VAG----SFVGDEE 208 (627)
Q Consensus 137 ~~~~--~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~--~~~----~~~gGe~ 208 (627)
++.. ....++.++|++|++.+++.+||+||+.+....+ +...++..+++.++++.+||.+ ..+ .++|||+
T Consensus 64 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~--~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~ 141 (242)
T cd03295 64 DIREQDPVELRRKIGYVIQQIGLFPHMTVEENIALVPKLL--KWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQ 141 (242)
T ss_pred EcCcCChHHhhcceEEEccCccccCCCcHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHH
Confidence 8632 3355678999999999999899999999875432 2334555678899999999974 444 4569999
Q ss_pred cC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeCCH
Q 006897 209 NR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGSL 270 (627)
Q Consensus 209 qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~ 270 (627)
|| ||+|||+.++..+.+.|++++++.|+|||++||+++ ++.++||++++|++|++++.|++
T Consensus 142 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~ 220 (242)
T cd03295 142 QRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDID-EAFRLADRIAIMKNGEIVQVGTP 220 (242)
T ss_pred HHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEecCH
Confidence 98 999999999999999999997655899999999998 58899999999999999999988
Q ss_pred HHHH
Q 006897 271 ELLE 274 (627)
Q Consensus 271 ~~~~ 274 (627)
+++.
T Consensus 221 ~~~~ 224 (242)
T cd03295 221 DEIL 224 (242)
T ss_pred HHHH
Confidence 7663
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=301.27 Aligned_cols=202 Identities=23% Similarity=0.379 Sum_probs=169.4
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
.|+++||+++|+... ...+++|+||||+|++||+++|+||||||||||+|+|+|+++|++ |+|.++|
T Consensus 2 ~l~~~~l~~~y~~~~----------~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~---G~i~~~g 68 (290)
T PRK13634 2 DITFQKVEHRYQYKT----------PFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTS---GTVTIGE 68 (290)
T ss_pred EEEEEEEEEEECCCC----------cccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCC---cEEEECC
Confidence 389999999995221 012469999999999999999999999999999999999999864 9999999
Q ss_pred ccCCC------hhhhcccEEEEccCC--CCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCc-cccC----C
Q 006897 136 HQIKK------PAQLRKICGFVAQED--NLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLT-HVAG----S 202 (627)
Q Consensus 136 ~~~~~------~~~~r~~ig~v~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~----~ 202 (627)
+++.. ....++.+|||||++ .+++ .||.||+.|+.... +.+.++.+++++++++.+||. +..+ .
T Consensus 69 ~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~-~tv~eni~~~~~~~--~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~ 145 (290)
T PRK13634 69 RVITAGKKNKKLKPLRKKVGIVFQFPEHQLFE-ETVEKDICFGPMNF--GVSEEDAKQKAREMIELVGLPEELLARSPFE 145 (290)
T ss_pred EECccccccchHHHHHhhEEEEeeCchhhhhh-hhHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHCCCChhhhhCCccc
Confidence 98631 234667899999986 4554 69999999875322 334556667899999999996 4444 4
Q ss_pred cCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeE
Q 006897 203 FVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSV 264 (627)
Q Consensus 203 ~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~i 264 (627)
++|||+|| ||+|||+.++..+.++|++++++.|.|||++|||++ ++.++|||+++|++|++
T Consensus 146 LSgGq~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~-~~~~~~drv~~l~~G~i 224 (290)
T PRK13634 146 LSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSME-DAARYADQIVVMHKGTV 224 (290)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEE
Confidence 56999998 999999999999999999998766899999999998 58899999999999999
Q ss_pred EeeCCHHHHH
Q 006897 265 VHYGSLELLE 274 (627)
Q Consensus 265 v~~G~~~~~~ 274 (627)
++.|+++++.
T Consensus 225 ~~~g~~~~~~ 234 (290)
T PRK13634 225 FLQGTPREIF 234 (290)
T ss_pred EEECCHHHHh
Confidence 9999988764
|
|
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-35 Score=291.23 Aligned_cols=194 Identities=29% Similarity=0.453 Sum_probs=164.2
Q ss_pred EEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCc
Q 006897 57 VTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCH 136 (627)
Q Consensus 57 l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~ 136 (627)
|+++|++++|+.. ...+.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++ |+|.++|+
T Consensus 1 l~~~~l~~~~~~~-----------~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~---G~i~~~g~ 66 (220)
T cd03293 1 LEVRNVSKTYGGG-----------GGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTS---GEVLVDGE 66 (220)
T ss_pred CeEEEEEEEcCCC-----------CcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCc---eEEEECCE
Confidence 4789999999421 011469999999999999999999999999999999999998864 99999998
Q ss_pred cCCChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCcccc----CCcCCccccC--
Q 006897 137 QIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVA----GSFVGDEENR-- 210 (627)
Q Consensus 137 ~~~~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~----~~~~gGe~qr-- 210 (627)
++. ..++.++|++|++.+++.+|++||+.++...+ +.+.++..++++++++.+||++.. ..++|||+||
T Consensus 67 ~~~---~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~ 141 (220)
T cd03293 67 PVT---GPGPDRGYVFQQDALLPWLTVLDNVALGLELQ--GVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVA 141 (220)
T ss_pred ECc---cccCcEEEEecccccccCCCHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHH
Confidence 853 24678999999999998899999999875432 233445567889999999997654 4566999998
Q ss_pred ----------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeec--CCeEEeeCCH
Q 006897 211 ----------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILS--RGSVVHYGSL 270 (627)
Q Consensus 211 ----------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~--~G~iv~~G~~ 270 (627)
||+|||+.++..+.+.|+++.++.|+|||++||+++ ++.++||++++|+ +|++++.++.
T Consensus 142 la~al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~~~G~i~~~~~~ 218 (220)
T cd03293 142 LARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDID-EAVFLADRVVVLSARPGRIVAEVEV 218 (220)
T ss_pred HHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhCCEEEEEECCCCEEEEEEEe
Confidence 999999999999999999997656899999999998 4889999999999 7999988765
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=298.56 Aligned_cols=197 Identities=22% Similarity=0.356 Sum_probs=167.2
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
+|+++||++.|+. .+.+|+|+||++++||++||+||||||||||+++|+|+++|++ |+|.++|
T Consensus 4 ~l~~~~l~~~~~~--------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~---G~i~~~g 66 (274)
T PRK13647 4 IIEVEDLHFRYKD--------------GTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQR---GRVKVMG 66 (274)
T ss_pred eEEEEEEEEEeCC--------------CCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCc---eEEEECC
Confidence 6999999999941 2359999999999999999999999999999999999999864 9999999
Q ss_pred ccCCC--hhhhcccEEEEccCCC-CCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccC----CcCCccc
Q 006897 136 HQIKK--PAQLRKICGFVAQEDN-LLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAG----SFVGDEE 208 (627)
Q Consensus 136 ~~~~~--~~~~r~~ig~v~Q~~~-l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~----~~~gGe~ 208 (627)
+++.. ....++.+||++|++. .++..||.||+.++... .+.++++.++++.++++.+||.+..+ .++|||+
T Consensus 67 ~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~--~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~~ 144 (274)
T PRK13647 67 REVNAENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVN--MGLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQK 144 (274)
T ss_pred EECCCCCHHHHHhhEEEEecChhhhhccCcHHHHHHhhHHH--cCCCHHHHHHHHHHHHHHCCCHHHhcCChhhCCHHHH
Confidence 88632 2455678999999963 34457999999987532 23344556678999999999976554 4569999
Q ss_pred cC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeCCH
Q 006897 209 NR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGSL 270 (627)
Q Consensus 209 qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~ 270 (627)
|| ||+|||+.++.++.++|++++++ |+|||++||+++ ++.++|||+++|++|++++.|++
T Consensus 145 qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-g~tili~tH~~~-~~~~~~d~i~~l~~G~i~~~g~~ 222 (274)
T PRK13647 145 KRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQ-GKTVIVATHDVD-LAAEWADQVIVLKEGRVLAEGDK 222 (274)
T ss_pred HHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEECCH
Confidence 98 99999999999999999999764 899999999998 47889999999999999999998
Q ss_pred HHH
Q 006897 271 ELL 273 (627)
Q Consensus 271 ~~~ 273 (627)
+++
T Consensus 223 ~~~ 225 (274)
T PRK13647 223 SLL 225 (274)
T ss_pred HHh
Confidence 765
|
|
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-35 Score=292.79 Aligned_cols=196 Identities=26% Similarity=0.475 Sum_probs=166.8
Q ss_pred EEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCc
Q 006897 57 VTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCH 136 (627)
Q Consensus 57 l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~ 136 (627)
|+++||+++|+ ++.+|+|+||++++||+++|+||||||||||+|+|+|+++|++ |+|.++|+
T Consensus 1 l~~~~l~~~~~---------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~---G~i~~~g~ 62 (232)
T cd03218 1 LRAENLSKRYG---------------KRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDS---GKILLDGQ 62 (232)
T ss_pred CeEEEEEEEeC---------------CEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCC---cEEEECCE
Confidence 47899999993 2459999999999999999999999999999999999999864 99999998
Q ss_pred cCCC--hhh-hcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccC----CcCCcccc
Q 006897 137 QIKK--PAQ-LRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAG----SFVGDEEN 209 (627)
Q Consensus 137 ~~~~--~~~-~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~----~~~gGe~q 209 (627)
++.. ... .++.++|++|++.+++.+||+||+.+....+ +...++..++++++++.+|+++..+ .++|||+|
T Consensus 63 ~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~q 140 (232)
T cd03218 63 DITKLPMHKRARLGIGYLPQEASIFRKLTVEENILAVLEIR--GLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERR 140 (232)
T ss_pred ecccCCHhHHHhccEEEecCCccccccCcHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHH
Confidence 7532 122 3467999999999999999999999865332 2234455667899999999976554 45699999
Q ss_pred C------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeCCHH
Q 006897 210 R------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGSLE 271 (627)
Q Consensus 210 r------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~ 271 (627)
| ||+|||+.++..+.+.|+++++ .|+|||++||+++ ++.++||++++|++|++++.|+.+
T Consensus 141 rl~la~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~-~~~tii~~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~ 218 (232)
T cd03218 141 RVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKD-RGIGVLITDHNVR-ETLSITDRAYIIYEGKVLAEGTPE 218 (232)
T ss_pred HHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCHH-HHHHhCCEEEEEECCeEEEEeCHH
Confidence 8 9999999999999999999976 4899999999998 589999999999999999999887
Q ss_pred HHH
Q 006897 272 LLE 274 (627)
Q Consensus 272 ~~~ 274 (627)
++.
T Consensus 219 ~~~ 221 (232)
T cd03218 219 EIA 221 (232)
T ss_pred Hhh
Confidence 653
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-35 Score=290.58 Aligned_cols=195 Identities=26% Similarity=0.455 Sum_probs=165.0
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
+|+++|++++|+.+. ...++|+|+||++++||+++|+||||||||||+++|+|+++|++ |+|.++|
T Consensus 1 ~l~~~~v~~~~~~~~-----------~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~---G~i~~~g 66 (218)
T cd03266 1 MITADALTKRFRDVK-----------KTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDA---GFATVDG 66 (218)
T ss_pred CeEEEEEEEecCCCC-----------ccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCC---ceEEECC
Confidence 478999999994210 11269999999999999999999999999999999999998864 9999999
Q ss_pred ccCCC-hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccC----CcCCccccC
Q 006897 136 HQIKK-PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAG----SFVGDEENR 210 (627)
Q Consensus 136 ~~~~~-~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~----~~~gGe~qr 210 (627)
+++.. ...+++.++|++|++.+++.+||+||+.+....+ +.+.++..++++++++.+||++..+ .++|||+||
T Consensus 67 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr 144 (218)
T cd03266 67 FDVVKEPAEARRRLGFVSDSTGLYDRLTARENLEYFAGLY--GLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQK 144 (218)
T ss_pred EEcccCHHHHHhhEEEecCCcccCcCCCHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHcCCHHHHhhhhhhcCHHHHHH
Confidence 88632 3456778999999999999899999998865432 2344556778999999999976554 466999998
Q ss_pred ------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeC
Q 006897 211 ------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYG 268 (627)
Q Consensus 211 ------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G 268 (627)
||+|||+.++..+.+.|+++++ .|+|||++||+++ ++.++||++++|++|++++.|
T Consensus 145 v~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~tH~~~-~~~~~~d~i~~l~~G~i~~~~ 218 (218)
T cd03266 145 VAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRA-LGKCILFSTHIMQ-EVERLCDRVVVLHRGRVVYEG 218 (218)
T ss_pred HHHHHHHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCHH-HHHHhcCEEEEEECCEEeecC
Confidence 9999999999999999999975 4899999999998 588999999999999998754
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=302.47 Aligned_cols=201 Identities=21% Similarity=0.411 Sum_probs=168.2
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
.|+++||+++|+.+. .....+|+|+||+|++||++||+||||||||||+++|+|+++|+. |+|.++|
T Consensus 2 ~i~~~~l~~~y~~~~----------~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~---G~i~~~g 68 (305)
T PRK13651 2 QIKVKNIVKIFNKKL----------PTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDT---GTIEWIF 68 (305)
T ss_pred EEEEEEEEEEECCCC----------CccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCC---cEEEEec
Confidence 489999999995321 012359999999999999999999999999999999999999864 9999998
Q ss_pred ccCC--------------------------ChhhhcccEEEEccCC--CCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHH
Q 006897 136 HQIK--------------------------KPAQLRKICGFVAQED--NLLPLLTVKETLMFSANFRLKGMSHKEKEDRV 187 (627)
Q Consensus 136 ~~~~--------------------------~~~~~r~~ig~v~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v 187 (627)
++.. .....++.+|||||++ .++ ..||+||+.|+... .+.++++.++++
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~-~~tv~e~i~~~~~~--~~~~~~~~~~~~ 145 (305)
T PRK13651 69 KDEKNKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLF-EQTIEKDIIFGPVS--MGVSKEEAKKRA 145 (305)
T ss_pred eecccccccccccccccccccccccccccchHHHHHhceEEEeeCcccccc-cccHHHHHHhhHHH--cCCCHHHHHHHH
Confidence 6531 1234577899999985 445 46999999987543 234566777889
Q ss_pred HHHHHHcCCc-cccC----CcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccC
Q 006897 188 ESLMDELGLT-HVAG----SFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQ 244 (627)
Q Consensus 188 ~~~l~~lgL~-~~~~----~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~ 244 (627)
.++++.+||+ +..+ .++|||+|| ||+|||+.++..+++.|+++++ .|+|||++|||
T Consensus 146 ~~~l~~~gL~~~~~~~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~-~g~tiiivtHd 224 (305)
T PRK13651 146 AKYIELVGLDESYLQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNK-QGKTIILVTHD 224 (305)
T ss_pred HHHHHHcCCChhhhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEeeC
Confidence 9999999996 4444 456999999 9999999999999999999975 59999999999
Q ss_pred ccHHHHHHhhhheeecCCeEEeeCCHHHHH
Q 006897 245 PSYRILQYISKFLILSRGSVVHYGSLELLE 274 (627)
Q Consensus 245 ~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~ 274 (627)
++ ++.++|||+++|++|++++.|+++++.
T Consensus 225 ~~-~~~~~adrv~vl~~G~i~~~g~~~~~~ 253 (305)
T PRK13651 225 LD-NVLEWTKRTIFFKDGKIIKDGDTYDIL 253 (305)
T ss_pred HH-HHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 98 488999999999999999999998874
|
|
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-35 Score=296.82 Aligned_cols=200 Identities=31% Similarity=0.437 Sum_probs=166.7
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
+|+++||+++|+. ++++|+|+||++++||+++|+||||||||||+++|+|+++|++ |+|.++|
T Consensus 1 ~l~~~~l~~~~~~--------------~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~---G~i~~~g 63 (243)
T TIGR02315 1 MLEVENLSKVYPN--------------GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSS---GSILLEG 63 (243)
T ss_pred CeEEEeeeeecCC--------------CcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCc---cEEEECC
Confidence 4789999999931 2459999999999999999999999999999999999998864 9999999
Q ss_pred ccCCC--h---hhhcccEEEEccCCCCCCCCCHHHHHHHHHHhc------CCCCCHHHHHHHHHHHHHHcCCccccC---
Q 006897 136 HQIKK--P---AQLRKICGFVAQEDNLLPLLTVKETLMFSANFR------LKGMSHKEKEDRVESLMDELGLTHVAG--- 201 (627)
Q Consensus 136 ~~~~~--~---~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~------~~~~~~~~~~~~v~~~l~~lgL~~~~~--- 201 (627)
+++.. . ..+++.+||++|++.+++.+||+||+.++.... ..+...++.++++.++++.+||.+..+
T Consensus 64 ~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 143 (243)
T TIGR02315 64 TDITKLRGKKLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRA 143 (243)
T ss_pred EEhhhCCHHHHHHHHhheEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCc
Confidence 87532 1 235678999999999999899999998753110 001112344577899999999976544
Q ss_pred -CcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCC
Q 006897 202 -SFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRG 262 (627)
Q Consensus 202 -~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G 262 (627)
.++|||+|| ||+|||+.++..+.+.|++++++.|+|||++||+++ ++.++||++++|++|
T Consensus 144 ~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~-~~~~~~d~v~~l~~G 222 (243)
T TIGR02315 144 DQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVD-LAKKYADRIVGLKAG 222 (243)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEEEEECC
Confidence 466999998 999999999999999999997656899999999998 478899999999999
Q ss_pred eEEeeCCHHHH
Q 006897 263 SVVHYGSLELL 273 (627)
Q Consensus 263 ~iv~~G~~~~~ 273 (627)
++++.|+++++
T Consensus 223 ~i~~~~~~~~~ 233 (243)
T TIGR02315 223 EIVFDGAPSEL 233 (243)
T ss_pred EEEecCCHHHh
Confidence 99999998765
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=293.50 Aligned_cols=198 Identities=25% Similarity=0.451 Sum_probs=168.3
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
+|+++|++++|+ ++.+|+|+||++++||+++|+||||||||||+++|+|+++|++ |+|.++|
T Consensus 1 ~l~~~~l~~~~~---------------~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g 62 (240)
T PRK09493 1 MIEFKNVSKHFG---------------PTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITS---GDLIVDG 62 (240)
T ss_pred CEEEEeEEEEEC---------------CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCc---eEEEECC
Confidence 478999999993 2459999999999999999999999999999999999998864 9999999
Q ss_pred ccCCC----hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccC----CcCCcc
Q 006897 136 HQIKK----PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAG----SFVGDE 207 (627)
Q Consensus 136 ~~~~~----~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~----~~~gGe 207 (627)
+++.. ....++.++|++|++.+++.+||+||+.++... ..+...++.++++.++++.+||++..+ .++|||
T Consensus 63 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~-~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~ 141 (240)
T PRK09493 63 LKVNDPKVDERLIRQEAGMVFQQFYLFPHLTALENVMFGPLR-VRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQ 141 (240)
T ss_pred EECCcCChhHHHHhhceEEEecccccCCCCcHHHHHHhHHHH-hcCCCHHHHHHHHHHHHHHcCChHHHhcChhhcCHHH
Confidence 88642 134567899999999999889999999886421 112334556677899999999976544 456999
Q ss_pred ccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeCC
Q 006897 208 ENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGS 269 (627)
Q Consensus 208 ~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~ 269 (627)
+|| ||+|||+.++..+.+.|+++++ +|+|||++||+++ ++.++||++++|++|++++.|+
T Consensus 142 ~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~g~ 219 (240)
T PRK09493 142 QQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAE-EGMTMVIVTHEIG-FAEKVASRLIFIDKGRIAEDGD 219 (240)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-cCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEeeCC
Confidence 998 9999999999999999999975 4899999999998 5788999999999999999999
Q ss_pred HHHHH
Q 006897 270 LELLE 274 (627)
Q Consensus 270 ~~~~~ 274 (627)
++++.
T Consensus 220 ~~~~~ 224 (240)
T PRK09493 220 PQVLI 224 (240)
T ss_pred HHHHh
Confidence 87653
|
|
| >PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=304.61 Aligned_cols=206 Identities=22% Similarity=0.365 Sum_probs=171.8
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCC-CccceEEEC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQD-FDPRSITVN 134 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~-~~~G~i~i~ 134 (627)
+|+++||++.|..+ .+..++|+||||+|++||++||+||||||||||+++|+|++++.. .+.|+|.++
T Consensus 3 ~L~v~~l~~~~~~~-----------~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~ 71 (326)
T PRK11022 3 LLNVDKLSVHFGDE-----------SAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFN 71 (326)
T ss_pred eEEEeCeEEEECCC-----------CccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEEC
Confidence 68999999999532 122469999999999999999999999999999999999997521 245999999
Q ss_pred CccCCC--hhh---h-cccEEEEccCC--CCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCcc-------c
Q 006897 135 CHQIKK--PAQ---L-RKICGFVAQED--NLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTH-------V 199 (627)
Q Consensus 135 g~~~~~--~~~---~-r~~ig~v~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-------~ 199 (627)
|+++.. .++ + ++.++||||++ .+.|.+|+.+++....... .+..+++.++++.++|+.+||.+ .
T Consensus 72 G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~-~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~ 150 (326)
T PRK11022 72 GQDLQRISEKERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVH-QGGNKKTRRQRAIDLLNQVGIPDPASRLDVY 150 (326)
T ss_pred CEECCcCCHHHHHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHCCCCChHHHHhCC
Confidence 998643 222 2 24799999997 5788999999988765432 12345667788999999999964 2
Q ss_pred cCCcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecC
Q 006897 200 AGSFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSR 261 (627)
Q Consensus 200 ~~~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~ 261 (627)
.++++|||+|| ||+|||+.++.+++++|++++++.|.|+|++|||++ .+.++||||++|++
T Consensus 151 p~~LSgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~-~~~~~adri~vm~~ 229 (326)
T PRK11022 151 PHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLA-LVAEAAHKIIVMYA 229 (326)
T ss_pred chhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC
Confidence 35677999999 999999999999999999998777999999999998 47889999999999
Q ss_pred CeEEeeCCHHHHH
Q 006897 262 GSVVHYGSLELLE 274 (627)
Q Consensus 262 G~iv~~G~~~~~~ 274 (627)
|++++.|+++++.
T Consensus 230 G~ive~g~~~~~~ 242 (326)
T PRK11022 230 GQVVETGKAHDIF 242 (326)
T ss_pred CEEEEECCHHHHh
Confidence 9999999998775
|
|
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-35 Score=281.61 Aligned_cols=199 Identities=26% Similarity=0.400 Sum_probs=169.3
Q ss_pred ceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEEC
Q 006897 55 CKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVN 134 (627)
Q Consensus 55 ~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~ 134 (627)
.+|+++||+..| +..++|++|||++++||+++|+||||||||||||+|+|+.++.+ |+|.++
T Consensus 2 ~mL~v~~l~~~Y---------------G~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~---G~I~~~ 63 (237)
T COG0410 2 PMLEVENLSAGY---------------GKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRS---GRIIFD 63 (237)
T ss_pred CceeEEeEeecc---------------cceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---eeEEEC
Confidence 379999999999 34679999999999999999999999999999999999999864 999999
Q ss_pred CccCCC---hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcC-Cc----cccCCcCCc
Q 006897 135 CHQIKK---PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELG-LT----HVAGSFVGD 206 (627)
Q Consensus 135 g~~~~~---~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lg-L~----~~~~~~~gG 206 (627)
|+++.. .+..|+.++||||...+||.|||+|||..++..+.. ++..+..++++.+.+- |. ..+.+++||
T Consensus 64 G~dit~~p~~~r~r~Gi~~VPegR~iF~~LTVeENL~~g~~~~~~---~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGG 140 (237)
T COG0410 64 GEDITGLPPHERARLGIAYVPEGRRIFPRLTVEENLLLGAYARRD---KEAQERDLEEVYELFPRLKERRNQRAGTLSGG 140 (237)
T ss_pred CeecCCCCHHHHHhCCeEeCcccccchhhCcHHHHHhhhhhcccc---cccccccHHHHHHHChhHHHHhcCcccCCChH
Confidence 999853 345678899999999999999999999998643311 1122222666666652 33 455677899
Q ss_pred cccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeC
Q 006897 207 EENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYG 268 (627)
Q Consensus 207 e~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G 268 (627)
|||- |+.||-|.-.++|.+.+++++++.|.||+++.++... +.+++||.++|.+|+++++|
T Consensus 141 EQQMLAiaRALm~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~-Al~iaDr~yvle~Griv~~G 219 (237)
T COG0410 141 EQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARF-ALEIADRGYVLENGRIVLSG 219 (237)
T ss_pred HHHHHHHHHHHhcCCCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHH-HHHhhCEEEEEeCCEEEEec
Confidence 9986 9999999999999999999998778999999999985 88999999999999999999
Q ss_pred CHHHHHH
Q 006897 269 SLELLEE 275 (627)
Q Consensus 269 ~~~~~~~ 275 (627)
+.+++..
T Consensus 220 ~~~eL~~ 226 (237)
T COG0410 220 TAAELLA 226 (237)
T ss_pred CHHHHhc
Confidence 9998864
|
|
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-35 Score=293.59 Aligned_cols=193 Identities=25% Similarity=0.393 Sum_probs=162.5
Q ss_pred EEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCC-----CCCCCccceE
Q 006897 57 VTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRV-----RDQDFDPRSI 131 (627)
Q Consensus 57 l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~-----~~~~~~~G~i 131 (627)
|+++||+++|+ ++.+|+|+||++++||+++|+||||||||||+|+|+|++ +|.+ |+|
T Consensus 1 i~~~~l~~~~~---------------~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~---G~i 62 (227)
T cd03260 1 IELRDLNVYYG---------------DKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDE---GEV 62 (227)
T ss_pred CEEEEEEEEcC---------------CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCC---eEE
Confidence 47899999993 235999999999999999999999999999999999999 7653 999
Q ss_pred EECCccCCC----hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCcccc------C
Q 006897 132 TVNCHQIKK----PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVA------G 201 (627)
Q Consensus 132 ~i~g~~~~~----~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~------~ 201 (627)
.++|+++.. ....++.+||++|++.++ .+||+||+.++...+. .....+.++++.++++.+||.+.. .
T Consensus 63 ~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~-~~tv~e~l~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 140 (227)
T cd03260 63 LLDGKDIYDLDVDVLELRRRVGMVFQKPNPF-PGSIYDNVAYGLRLHG-IKLKEELDERVEEALRKAALWDEVKDRLHAL 140 (227)
T ss_pred EECCEEhhhcchHHHHHHhhEEEEecCchhc-cccHHHHHHhHHHhcC-CCcHHHHHHHHHHHHHHcCCChHHhccCCcc
Confidence 999988632 234567899999998888 7899999998754321 112233567789999999997542 5
Q ss_pred CcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCe
Q 006897 202 SFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGS 263 (627)
Q Consensus 202 ~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~ 263 (627)
.++|||+|| ||+|||+.++..+.+.|++++++ +|||++|||++ ++.++||++++|++|+
T Consensus 141 ~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~--~tii~~sH~~~-~~~~~~d~i~~l~~G~ 217 (227)
T cd03260 141 GLSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKE--YTIVIVTHNMQ-QAARVADRTAFLLNGR 217 (227)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhC--cEEEEEeccHH-HHHHhCCEEEEEeCCE
Confidence 567999998 99999999999999999999753 89999999998 5888999999999999
Q ss_pred EEeeCCHHH
Q 006897 264 VVHYGSLEL 272 (627)
Q Consensus 264 iv~~G~~~~ 272 (627)
+++.|++++
T Consensus 218 i~~~g~~~~ 226 (227)
T cd03260 218 LVEFGPTEQ 226 (227)
T ss_pred EEEecCccc
Confidence 999998764
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-35 Score=290.08 Aligned_cols=196 Identities=28% Similarity=0.457 Sum_probs=166.4
Q ss_pred EEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCc
Q 006897 57 VTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCH 136 (627)
Q Consensus 57 l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~ 136 (627)
|+++||+++|+. +.+++|+|+||++++||+++|+||||||||||+++|+|+++|++ |+|.++|+
T Consensus 1 l~~~~l~~~~~~-------------~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~---G~i~~~g~ 64 (220)
T cd03263 1 LQIRNLTKTYKK-------------GTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTS---GTAYINGY 64 (220)
T ss_pred CEEEeeEEEeCC-------------CCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCC---cEEEECCE
Confidence 478999999942 11469999999999999999999999999999999999998864 99999998
Q ss_pred cCCC-hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccC----CcCCccccC-
Q 006897 137 QIKK-PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAG----SFVGDEENR- 210 (627)
Q Consensus 137 ~~~~-~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~----~~~gGe~qr- 210 (627)
++.. ...+++.++|++|++.+++.+|++||+.+....+ +.+.++.+++++++++.+||.+..+ .++|||+||
T Consensus 65 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv 142 (220)
T cd03263 65 SIRTDRKAARQSLGYCPQFDALFDELTVREHLRFYARLK--GLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKL 142 (220)
T ss_pred ecccchHHHhhhEEEecCcCCccccCCHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHcCCHHHHhChhhhCCHHHHHHH
Confidence 8632 2456678999999999998899999999865432 2234455677899999999976544 466999998
Q ss_pred -----------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeCCHHHH
Q 006897 211 -----------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGSLELL 273 (627)
Q Consensus 211 -----------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~ 273 (627)
||+|||+.++..+.+.|+++++ ++|||++||+++ ++.++||++++|++|++++.|+++++
T Consensus 143 ~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tii~~sH~~~-~~~~~~d~i~~l~~g~i~~~~~~~~~ 219 (220)
T cd03263 143 SLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRK--GRSIILTTHSMD-EAEALCDRIAIMSDGKLRCIGSPQEL 219 (220)
T ss_pred HHHHHHhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhc--CCEEEEEcCCHH-HHHHhcCEEEEEECCEEEecCCHHHc
Confidence 9999999999999999999864 589999999998 47889999999999999999988754
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=311.01 Aligned_cols=212 Identities=23% Similarity=0.370 Sum_probs=174.8
Q ss_pred eEEEEeEEEEEccCccccc----------ccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCC
Q 006897 56 KVTVRNLSYAIQPNTSILS----------HLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQD 125 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~----------~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~ 125 (627)
+|+++||++.|+.+..... ... +..+...+|+|+||+|++||+++|+||||||||||+|+|+|+++|++
T Consensus 4 ~i~~~~~~k~fg~~~~~~~~~~~~~~~~~~~~-~~~~~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~s 82 (400)
T PRK10070 4 KLEIKNLYKIFGEHPQRAFKYIEQGLSKEQIL-EKTGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTR 82 (400)
T ss_pred EEEEeeeEEecCCChHHHHHHHhccccHHHHH-hhcCCeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCC
Confidence 6999999999975431000 000 11123458999999999999999999999999999999999999864
Q ss_pred CccceEEECCccCCC--hhh----hcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccc
Q 006897 126 FDPRSITVNCHQIKK--PAQ----LRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHV 199 (627)
Q Consensus 126 ~~~G~i~i~g~~~~~--~~~----~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~ 199 (627)
|+|.++|+++.. ... .++.+|||+|++.+++.+||+||+.++...+ +.+.++.++++.++++.+||++.
T Consensus 83 ---G~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~Tv~enl~~~~~~~--~~~~~~~~~~~~e~L~~~gL~~~ 157 (400)
T PRK10070 83 ---GQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMTVLDNTAFGMELA--GINAEERREKALDALRQVGLENY 157 (400)
T ss_pred ---CEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCCCHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCChh
Confidence 999999998642 222 2357999999999999999999999976432 33455666789999999999876
Q ss_pred cC----CcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhhe
Q 006897 200 AG----SFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFL 257 (627)
Q Consensus 200 ~~----~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~ 257 (627)
.+ .++|||+|| ||+|||+.++..+.+.|++++++.|+|||++|||++ ++.++||+++
T Consensus 158 ~~~~~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~-~~~~~~Dri~ 236 (400)
T PRK10070 158 AHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLD-EAMRIGDRIA 236 (400)
T ss_pred hhcCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHH-HHHHhCCEEE
Confidence 55 456999999 999999999999999999997666899999999998 5889999999
Q ss_pred eecCCeEEeeCCHHHHH
Q 006897 258 ILSRGSVVHYGSLELLE 274 (627)
Q Consensus 258 vL~~G~iv~~G~~~~~~ 274 (627)
+|++|+++..|+++++.
T Consensus 237 vL~~G~i~~~g~~~~l~ 253 (400)
T PRK10070 237 IMQNGEVVQVGTPDEIL 253 (400)
T ss_pred EEECCEEEecCCHHHHH
Confidence 99999999999988764
|
|
| >COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-35 Score=294.58 Aligned_cols=213 Identities=25% Similarity=0.382 Sum_probs=182.9
Q ss_pred eEEEEeEEEEEccCccccccc---------ccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCC
Q 006897 56 KVTVRNLSYAIQPNTSILSHL---------LHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDF 126 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~---------~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~ 126 (627)
.|+++||++-|..+....-.. ...+.+...-++|+||++++|||+.|+|-||||||||+|+|.++++|+.
T Consensus 4 ~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~- 82 (386)
T COG4175 4 KIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTR- 82 (386)
T ss_pred eEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCC-
Confidence 589999999996543211000 0011233456899999999999999999999999999999999999975
Q ss_pred ccceEEECCccCCC--h---hhhc-ccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCcccc
Q 006897 127 DPRSITVNCHQIKK--P---AQLR-KICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVA 200 (627)
Q Consensus 127 ~~G~i~i~g~~~~~--~---~~~r-~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~ 200 (627)
|+|.++|+++.. . .++| +++++|||+..|+|+.||.||..|+..+ .+.+++++++++.++|+.+||+...
T Consensus 83 --G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLev--~Gv~~~er~~~a~~~l~~VgL~~~~ 158 (386)
T COG4175 83 --GEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLEV--QGVPKAEREERALEALELVGLEGYA 158 (386)
T ss_pred --ceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhcceee--cCCCHHHHHHHHHHHHHHcCchhhh
Confidence 999999999843 2 3344 5799999999999999999999999754 5788999999999999999998766
Q ss_pred C----CcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhhee
Q 006897 201 G----SFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLI 258 (627)
Q Consensus 201 ~----~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~v 258 (627)
+ +++||+||| |+|+|||--+.++-+.|.++.++.++||+++|||++ |+.++.|||.+
T Consensus 159 ~~yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLd-EAlriG~rIai 237 (386)
T COG4175 159 DKYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLD-EALRIGDRIAI 237 (386)
T ss_pred hcCcccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHH-HHHhccceEEE
Confidence 5 556999999 899999999999999999999999999999999999 69999999999
Q ss_pred ecCCeEEeeCCHHHHH
Q 006897 259 LSRGSVVHYGSLELLE 274 (627)
Q Consensus 259 L~~G~iv~~G~~~~~~ 274 (627)
|++|+|+..|+|+|+.
T Consensus 238 mkdG~ivQ~Gtp~eIl 253 (386)
T COG4175 238 MKDGEIVQVGTPEEIL 253 (386)
T ss_pred ecCCeEEEeCCHHHHH
Confidence 9999999999999885
|
|
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-34 Score=290.91 Aligned_cols=198 Identities=28% Similarity=0.456 Sum_probs=167.2
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
+|+++|++++|+ ++.+|+|+||++++||+++|+||||||||||+++|+|+++|++ |+|.++|
T Consensus 1 ~l~~~~l~~~~~---------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~---G~i~~~g 62 (236)
T TIGR03864 1 ALEVAGLSFAYG---------------ARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQE---GQISVAG 62 (236)
T ss_pred CEEEEeeEEEEC---------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCc---eEEEECC
Confidence 478999999993 2459999999999999999999999999999999999998864 9999999
Q ss_pred ccCCC-hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccC----CcCCccccC
Q 006897 136 HQIKK-PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAG----SFVGDEENR 210 (627)
Q Consensus 136 ~~~~~-~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~----~~~gGe~qr 210 (627)
.++.. ....++.++|++|++.+++.+|++||+.+....+ +...++..+++.++++.+||++..+ .++|||+||
T Consensus 63 ~~i~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qr 140 (236)
T TIGR03864 63 HDLRRAPRAALARLGVVFQQPTLDLDLSVRQNLRYHAALH--GLSRAEARERIAALLARLGLAERADDKVRELNGGHRRR 140 (236)
T ss_pred EEcccCChhhhhhEEEeCCCCCCcccCcHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHH
Confidence 87632 2233457999999998888899999998865432 2334455677899999999976554 456999998
Q ss_pred ------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeCCHHH
Q 006897 211 ------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGSLEL 272 (627)
Q Consensus 211 ------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~ 272 (627)
||+|||+.++..+.+.|++++++.|+|||++||+++. +. .||++++|++|++++.|++++
T Consensus 141 l~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~-~~-~~d~i~~l~~G~i~~~~~~~~ 218 (236)
T TIGR03864 141 VEIARALLHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDE-IE-ADDRLVVLHRGRVLADGAAAE 218 (236)
T ss_pred HHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhh-Hh-hCCEEEEEeCCeEEEeCCHHH
Confidence 9999999999999999999976568999999999984 65 599999999999999999877
Q ss_pred HHH
Q 006897 273 LEE 275 (627)
Q Consensus 273 ~~~ 275 (627)
+.+
T Consensus 219 ~~~ 221 (236)
T TIGR03864 219 LRG 221 (236)
T ss_pred HHH
Confidence 654
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-34 Score=303.42 Aligned_cols=211 Identities=23% Similarity=0.314 Sum_probs=174.3
Q ss_pred ceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEEC
Q 006897 55 CKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVN 134 (627)
Q Consensus 55 ~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~ 134 (627)
.+|+++||++.|..+... ....+...+|+||||+|++||++||+|+||||||||+++|+|+++|.+ |+|.++
T Consensus 4 ~~l~v~nl~~~~~~~~~~-----~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~---G~i~~~ 75 (327)
T PRK11308 4 PLLQAIDLKKHYPVKRGL-----FKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTG---GELYYQ 75 (327)
T ss_pred ceEEEeeeEEEEcCCCCc-----cccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCC---cEEEEC
Confidence 379999999999532100 000123569999999999999999999999999999999999998853 999999
Q ss_pred CccCCC--h---hhhcccEEEEccCC--CCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCcc-cc----CC
Q 006897 135 CHQIKK--P---AQLRKICGFVAQED--NLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTH-VA----GS 202 (627)
Q Consensus 135 g~~~~~--~---~~~r~~ig~v~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~----~~ 202 (627)
|+++.. . ..+|+.++||||++ .+.|.+||.+++....... .+..+++.++++.++++.+||.+ .. ..
T Consensus 76 g~~l~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~-~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~ 154 (327)
T PRK11308 76 GQDLLKADPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLIN-TSLSAAERREKALAMMAKVGLRPEHYDRYPHM 154 (327)
T ss_pred CEEcCcCCHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHc-cCCCHHHHHHHHHHHHHHCCCChHHhcCCCcc
Confidence 998643 1 24577899999997 5889999999998765432 12345667788999999999963 33 35
Q ss_pred cCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeE
Q 006897 203 FVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSV 264 (627)
Q Consensus 203 ~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~i 264 (627)
++|||+|| ||++||+.++.+++++|++++++.|.|||+||||++ .+.++||++++|++|++
T Consensus 155 LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~-~~~~~adrv~vm~~G~i 233 (327)
T PRK11308 155 FSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLS-VVEHIADEVMVMYLGRC 233 (327)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEECCEE
Confidence 66999999 999999999999999999998777999999999998 47789999999999999
Q ss_pred EeeCCHHHHHH
Q 006897 265 VHYGSLELLEE 275 (627)
Q Consensus 265 v~~G~~~~~~~ 275 (627)
++.|+++++.+
T Consensus 234 ve~g~~~~~~~ 244 (327)
T PRK11308 234 VEKGTKEQIFN 244 (327)
T ss_pred EEECCHHHHhc
Confidence 99999987743
|
|
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-34 Score=300.15 Aligned_cols=202 Identities=26% Similarity=0.399 Sum_probs=169.9
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
.|+++||++.|+.+. ...+.+|+||||+|++||++||+||||||||||+|+|+|+++|+. |+|.++|
T Consensus 2 ~l~~~~l~~~y~~~~----------~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~---G~i~~~g 68 (286)
T PRK13646 2 TIRFDNVSYTYQKGT----------PYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTT---GTVTVDD 68 (286)
T ss_pred EEEEEEEEEEECCCC----------ccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCC---cEEEECC
Confidence 489999999994211 012469999999999999999999999999999999999999864 9999999
Q ss_pred ccCCC------hhhhcccEEEEccCC--CCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCc-ccc----CC
Q 006897 136 HQIKK------PAQLRKICGFVAQED--NLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLT-HVA----GS 202 (627)
Q Consensus 136 ~~~~~------~~~~r~~ig~v~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~----~~ 202 (627)
+++.. ...+++.+|||||++ .+++ .||.||+.++... .+.++++..+++.++++.+||+ +.. ..
T Consensus 69 ~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~-~tv~e~i~~~~~~--~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~ 145 (286)
T PRK13646 69 ITITHKTKDKYIRPVRKRIGMVFQFPESQLFE-DTVEREIIFGPKN--FKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQ 145 (286)
T ss_pred EECccccccchHHHHHhheEEEecChHhccch-hhHHHHHHhhHHH--cCCCHHHHHHHHHHHHHHcCCChhhhhCCccc
Confidence 88632 135678899999986 4665 4999999987532 2335566677899999999996 444 45
Q ss_pred cCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeE
Q 006897 203 FVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSV 264 (627)
Q Consensus 203 ~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~i 264 (627)
++|||+|| ||+|||+.++..+.++|++++++.|+|||++||+++ ++.++|||+++|++|++
T Consensus 146 LSgGq~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~-~~~~~~dri~~l~~G~i 224 (286)
T PRK13646 146 MSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMN-EVARYADEVIVMKEGSI 224 (286)
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEECCEE
Confidence 66999998 999999999999999999997666899999999998 48889999999999999
Q ss_pred EeeCCHHHHH
Q 006897 265 VHYGSLELLE 274 (627)
Q Consensus 265 v~~G~~~~~~ 274 (627)
++.|+++++.
T Consensus 225 ~~~g~~~~~~ 234 (286)
T PRK13646 225 VSQTSPKELF 234 (286)
T ss_pred EEECCHHHHH
Confidence 9999998764
|
|
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-34 Score=293.35 Aligned_cols=198 Identities=28% Similarity=0.437 Sum_probs=168.2
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
+|+++||+++|+ ++.+|+|+||++++||+++|+||||||||||+++|+|+++|++ |+|.++|
T Consensus 3 ~l~~~~l~~~~~---------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g 64 (250)
T PRK11264 3 AIEVKNLVKKFH---------------GQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEA---GTIRVGD 64 (250)
T ss_pred cEEEeceEEEEC---------------CeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCC---eEEEECC
Confidence 689999999993 2359999999999999999999999999999999999998864 9999999
Q ss_pred ccCCC----------hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccC----
Q 006897 136 HQIKK----------PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAG---- 201 (627)
Q Consensus 136 ~~~~~----------~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~---- 201 (627)
+++.. ....++.++|++|++.+++.+|+.||+.++.... .+...++..+++.++++.+||++..+
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~-~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~ 143 (250)
T PRK11264 65 ITIDTARSLSQQKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIV-KGEPKEEATARARELLAKVGLAGKETSYPR 143 (250)
T ss_pred EEccccccccchhhHHHHhhhhEEEEecCcccCCCCCHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHcCCcchhhCChh
Confidence 87532 1245678999999999998899999998854211 12234455677899999999976544
Q ss_pred CcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCe
Q 006897 202 SFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGS 263 (627)
Q Consensus 202 ~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~ 263 (627)
.++|||+|| ||+|||+.++..+.+.|+++++ .|+|||++||+++ ++.++||++++|++|+
T Consensus 144 ~LS~Gq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~~tvi~~tH~~~-~~~~~~d~i~~l~~G~ 221 (250)
T PRK11264 144 RLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQ-EKRTMVIVTHEMS-FARDVADRAIFMDQGR 221 (250)
T ss_pred hCChHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCHH-HHHHhcCEEEEEECCE
Confidence 466999998 9999999999999999999975 4899999999998 5888999999999999
Q ss_pred EEeeCCHHHHH
Q 006897 264 VVHYGSLELLE 274 (627)
Q Consensus 264 iv~~G~~~~~~ 274 (627)
+++.|+++++.
T Consensus 222 i~~~~~~~~~~ 232 (250)
T PRK11264 222 IVEQGPAKALF 232 (250)
T ss_pred EEEeCCHHHHh
Confidence 99999987763
|
|
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-34 Score=286.90 Aligned_cols=188 Identities=24% Similarity=0.511 Sum_probs=161.6
Q ss_pred EEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCc
Q 006897 57 VTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCH 136 (627)
Q Consensus 57 l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~ 136 (627)
|+++|+++.|. ++.+++|+||++++||+++|+||||||||||+++|+|+++|++ |+|.++|+
T Consensus 1 l~~~~l~~~~~---------------~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g~ 62 (210)
T cd03269 1 LEVENVTKRFG---------------RVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDS---GEVLFDGK 62 (210)
T ss_pred CEEEEEEEEEC---------------CEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCc---eEEEECCC
Confidence 47899999993 2459999999999999999999999999999999999998864 99999998
Q ss_pred cCCChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccC----CcCCccccC--
Q 006897 137 QIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAG----SFVGDEENR-- 210 (627)
Q Consensus 137 ~~~~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~----~~~gGe~qr-- 210 (627)
++. ...++.++|++|++.+++.+|++||+.+....+ +.+..+.+++++++++.+|+++..+ .++|||+||
T Consensus 63 ~~~--~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~ 138 (210)
T cd03269 63 PLD--IAARNRIGYLPEERGLYPKMKVIDQLVYLAQLK--GLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQ 138 (210)
T ss_pred chh--HHHHccEEEeccCCcCCcCCcHHHHHHHHHHHc--CCChHHHHHHHHHHHHHcCChHHHhCcHhhCCHHHHHHHH
Confidence 753 245678999999999999899999999865432 2334555678899999999976544 466999998
Q ss_pred ----------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeC
Q 006897 211 ----------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYG 268 (627)
Q Consensus 211 ----------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G 268 (627)
||+|||+.++..+.+.|+++++ .|+|||++||+++ ++.++||++++|++|++++.|
T Consensus 139 la~al~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~-~~~tii~~sH~~~-~~~~~~d~i~~l~~g~i~~~~ 210 (210)
T cd03269 139 FIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELAR-AGKTVILSTHQME-LVEELCDRVLLLNKGRAVLYG 210 (210)
T ss_pred HHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHH-CCCEEEEECCCHH-HHHHhhhEEEEEeCCEEEecC
Confidence 9999999999999999999976 4899999999998 478899999999999998754
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-34 Score=298.28 Aligned_cols=199 Identities=23% Similarity=0.395 Sum_probs=168.9
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
+|+++||+++|+. ++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++ |+|.++|
T Consensus 5 ~l~~~~l~~~~~~--------------~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~---G~i~i~g 67 (283)
T PRK13636 5 ILKVEELNYNYSD--------------GTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSS---GRILFDG 67 (283)
T ss_pred eEEEEeEEEEeCC--------------CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCc---cEEEECC
Confidence 7999999999941 2459999999999999999999999999999999999999864 9999999
Q ss_pred ccCC-C---hhhhcccEEEEccCCC-CCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccC----CcCCc
Q 006897 136 HQIK-K---PAQLRKICGFVAQEDN-LLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAG----SFVGD 206 (627)
Q Consensus 136 ~~~~-~---~~~~r~~ig~v~Q~~~-l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~----~~~gG 206 (627)
+++. . ...+++.+||+||++. .+...||+||+.++.... +.+.++..++++++++.+||.+..+ .++||
T Consensus 68 ~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~--~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G 145 (283)
T PRK13636 68 KPIDYSRKGLMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNL--KLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFG 145 (283)
T ss_pred EECCCCcchHHHHHhhEEEEecCcchhhccccHHHHHHhHHHHc--CCCHHHHHHHHHHHHHHCCChhhhhCCcccCCHH
Confidence 8862 1 2356788999999963 233479999999865321 3345566678999999999986554 45699
Q ss_pred cccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeC
Q 006897 207 EENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYG 268 (627)
Q Consensus 207 e~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G 268 (627)
|+|| ||+|||+.++..+.+.|++++++.|+|||++||+++ ++.++|||+++|++|++++.|
T Consensus 146 ~~qrl~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~-~~~~~~dri~~l~~G~i~~~g 224 (283)
T PRK13636 146 QKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDID-IVPLYCDNVFVMKEGRVILQG 224 (283)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEeC
Confidence 9998 999999999999999999998766899999999998 478899999999999999999
Q ss_pred CHHHHH
Q 006897 269 SLELLE 274 (627)
Q Consensus 269 ~~~~~~ 274 (627)
+++++.
T Consensus 225 ~~~~~~ 230 (283)
T PRK13636 225 NPKEVF 230 (283)
T ss_pred CHHHHh
Confidence 998764
|
|
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=286.60 Aligned_cols=186 Identities=25% Similarity=0.447 Sum_probs=159.6
Q ss_pred EEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCc
Q 006897 57 VTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCH 136 (627)
Q Consensus 57 l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~ 136 (627)
|+++|++++|+ ++.+|+|+||++++||+++|+||||||||||+++|+|+++|++ |+|.++|+
T Consensus 1 l~~~~l~~~~~---------------~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~---G~i~~~g~ 62 (208)
T cd03268 1 LKTNDLTKTYG---------------KKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDS---GEITFDGK 62 (208)
T ss_pred CEEEEEEEEEC---------------CeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCc---eEEEECCC
Confidence 47899999993 2469999999999999999999999999999999999998864 99999998
Q ss_pred cCCChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccC----CcCCccccC--
Q 006897 137 QIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAG----SFVGDEENR-- 210 (627)
Q Consensus 137 ~~~~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~----~~~gGe~qr-- 210 (627)
++......++.++|++|++.+++.+||+||+.+....+ +. .+++++++++.+||++..+ .++|||+||
T Consensus 63 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~--~~----~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ 136 (208)
T cd03268 63 SYQKNIEALRRIGALIEAPGFYPNLTARENLRLLARLL--GI----RKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLG 136 (208)
T ss_pred cccchHHHHhhEEEecCCCccCccCcHHHHHHHHHHhc--CC----cHHHHHHHHHHcCCHHHHhhhHhhCCHHHHHHHH
Confidence 75432345678999999999998999999999875322 11 2456888999999976554 466999998
Q ss_pred ----------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeC
Q 006897 211 ----------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYG 268 (627)
Q Consensus 211 ----------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G 268 (627)
||+|||+.++..+.+.|+++++ .|+|+|++|||++ ++.++||++++|++|++++.|
T Consensus 137 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~tH~~~-~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 137 IALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRD-QGITVLISSHLLS-EIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred HHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEcCCHH-HHHHhcCEEEEEECCEEEecC
Confidence 9999999999999999999976 5899999999998 478899999999999998765
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >PRK14267 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-34 Score=291.99 Aligned_cols=201 Identities=24% Similarity=0.359 Sum_probs=167.1
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCC--CccceEEE
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQD--FDPRSITV 133 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~--~~~G~i~i 133 (627)
+|+++||+++|+ ++.+|+|+||++++||+++|+||||||||||+++|+|+++|+. .+.|+|.+
T Consensus 4 ~l~~~~l~~~~~---------------~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~ 68 (253)
T PRK14267 4 AIETVNLRVYYG---------------SNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRL 68 (253)
T ss_pred eEEEEeEEEEeC---------------CeeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEE
Confidence 689999999993 2359999999999999999999999999999999999998741 12499999
Q ss_pred CCccCC----ChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCcc--------ccC
Q 006897 134 NCHQIK----KPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTH--------VAG 201 (627)
Q Consensus 134 ~g~~~~----~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~--------~~~ 201 (627)
+|+++. ....+++.++|++|++.+++.+||.||+.++...+....+.++..++++++++.+|+.+ ...
T Consensus 69 ~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~ 148 (253)
T PRK14267 69 FGRNIYSPDVDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPS 148 (253)
T ss_pred CCEEccccccChHHHhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChh
Confidence 998863 12346678999999999999999999999875432111133455667889999998742 234
Q ss_pred CcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCe
Q 006897 202 SFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGS 263 (627)
Q Consensus 202 ~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~ 263 (627)
.++|||+|| ||+|||+.++..+.+.|+++++ ++|||++||+++ ++.++||++++|++|+
T Consensus 149 ~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tiii~sH~~~-~~~~~~d~i~~l~~G~ 225 (253)
T PRK14267 149 NLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKK--EYTIVLVTHSPA-QAARVSDYVAFLYLGK 225 (253)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhh--CCEEEEEECCHH-HHHhhCCEEEEEECCE
Confidence 567999998 9999999999999999999964 589999999998 4888999999999999
Q ss_pred EEeeCCHHHHH
Q 006897 264 VVHYGSLELLE 274 (627)
Q Consensus 264 iv~~G~~~~~~ 274 (627)
+++.|+++++.
T Consensus 226 i~~~~~~~~~~ 236 (253)
T PRK14267 226 LIEVGPTRKVF 236 (253)
T ss_pred EEEeCCHHHHH
Confidence 99999988764
|
|
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-34 Score=288.30 Aligned_cols=194 Identities=26% Similarity=0.408 Sum_probs=162.6
Q ss_pred EEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCc
Q 006897 57 VTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCH 136 (627)
Q Consensus 57 l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~ 136 (627)
|+++||+++|+ ++++|+|+||++++||++||+||||||||||+++|+|+++|+. |+|.++|+
T Consensus 1 l~~~~l~~~~~---------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~---G~i~~~g~ 62 (222)
T cd03224 1 LEVENLNAGYG---------------KSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRS---GSIRFDGR 62 (222)
T ss_pred CEEeeEEeecC---------------CeeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCC---ceEEECCE
Confidence 47899999993 2359999999999999999999999999999999999999864 99999998
Q ss_pred cCCC--hhh-hcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHc-CCccccC----CcCCccc
Q 006897 137 QIKK--PAQ-LRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDEL-GLTHVAG----SFVGDEE 208 (627)
Q Consensus 137 ~~~~--~~~-~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~l-gL~~~~~----~~~gGe~ 208 (627)
++.. ..+ .++.++|++|++.+++.+|++||+.+..... . ..+..+++.++++.+ ++++..+ .++|||+
T Consensus 63 ~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~--~--~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~ 138 (222)
T cd03224 63 DITGLPPHERARAGIGYVPEGRRIFPELTVEENLLLGAYAR--R--RAKRKARLERVYELFPRLKERRKQLAGTLSGGEQ 138 (222)
T ss_pred EcCCCCHHHHHhcCeEEeccccccCCCCcHHHHHHHHhhhc--C--chhHHHHHHHHHHHHHhhhhhhhCchhhCCHHHH
Confidence 7632 222 3567999999999999999999999875332 1 223445677788887 4655443 4679999
Q ss_pred cC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeCCH
Q 006897 209 NR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGSL 270 (627)
Q Consensus 209 qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~ 270 (627)
|| ||+|||+.++..+++.|+++++ .|+|||++||+++ ++.++||++++|++|++++.|++
T Consensus 139 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~ 216 (222)
T cd03224 139 QMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRD-EGVTILLVEQNAR-FALEIADRAYVLERGRVVLEGTA 216 (222)
T ss_pred HHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCHH-HHHHhccEEEEeeCCeEEEeCCH
Confidence 98 9999999999999999999976 5899999999998 58899999999999999999988
Q ss_pred HHHH
Q 006897 271 ELLE 274 (627)
Q Consensus 271 ~~~~ 274 (627)
+++.
T Consensus 217 ~~~~ 220 (222)
T cd03224 217 AELL 220 (222)
T ss_pred HHHh
Confidence 7653
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-34 Score=291.44 Aligned_cols=199 Identities=22% Similarity=0.347 Sum_probs=166.6
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCC--CccceEEE
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQD--FDPRSITV 133 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~--~~~G~i~i 133 (627)
+|+++||+++|+ ++.+|+|+||++++||+++|+||||||||||+|+|+|+++|+. ...|+|.+
T Consensus 1 ~l~~~~l~~~~~---------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~ 65 (247)
T TIGR00972 1 AIEIENLNLFYG---------------EKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLF 65 (247)
T ss_pred CEEEEEEEEEEC---------------CeeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEE
Confidence 478999999993 2358999999999999999999999999999999999998750 01399999
Q ss_pred CCccCCC----hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCc----ccc----C
Q 006897 134 NCHQIKK----PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLT----HVA----G 201 (627)
Q Consensus 134 ~g~~~~~----~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~~~----~ 201 (627)
+|+++.. ....++.++|+||++.+++ +|+.||+.+....+. ..+.++..+++.++++.+||. +.. .
T Consensus 66 ~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~e~l~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~ 143 (247)
T TIGR00972 66 DGQDIYDKKIDVVELRRRVGMVFQKPNPFP-MSIYDNIAYGPRLHG-IKDKKELDEIVEESLKKAALWDEVKDRLHDSAL 143 (247)
T ss_pred CCEEccccccchHHHHhheEEEecCcccCC-CCHHHHHHhHHHhcC-CCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcc
Confidence 9988632 2345678999999998888 899999998754321 123455567889999999997 433 3
Q ss_pred CcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCe
Q 006897 202 SFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGS 263 (627)
Q Consensus 202 ~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~ 263 (627)
.++|||+|| ||+|||+.++..+.++|+++++ ++|||++||+++ ++.++||++++|++|+
T Consensus 144 ~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tiiivsH~~~-~~~~~~d~i~~l~~G~ 220 (247)
T TIGR00972 144 GLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKK--KYTIVIVTHNMQ-QAARISDRTAFFYDGE 220 (247)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--cCeEEEEecCHH-HHHHhCCEEEEEECCE
Confidence 456999998 9999999999999999999975 489999999998 5889999999999999
Q ss_pred EEeeCCHHHHH
Q 006897 264 VVHYGSLELLE 274 (627)
Q Consensus 264 iv~~G~~~~~~ 274 (627)
+++.|+++++.
T Consensus 221 i~~~~~~~~~~ 231 (247)
T TIGR00972 221 LVEYGPTEQIF 231 (247)
T ss_pred EEEeCCHHHHH
Confidence 99999987763
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-34 Score=307.58 Aligned_cols=212 Identities=25% Similarity=0.381 Sum_probs=174.9
Q ss_pred EEEEeEEEEEccCccccccc---------ccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCc
Q 006897 57 VTVRNLSYAIQPNTSILSHL---------LHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFD 127 (627)
Q Consensus 57 l~~~nls~~y~~~~~~~~~~---------~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~ 127 (627)
|+++||.+-|+.+......+ ..+..+...+|+|+||+|++||+++|+||||||||||+|+|+|+++|+.
T Consensus 1 ~~~~~~~k~fg~~~~~~~~~~~~g~~~~~~~~~~g~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~-- 78 (382)
T TIGR03415 1 IDFKNVDVVFGDQPAEALALLDQGKTREEILDETGLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSR-- 78 (382)
T ss_pred CEEEeeEEeeCCCHHHHHHHHHcCCCHHHHHHhhCCEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCC--
Confidence 57899999996543321110 0122245679999999999999999999999999999999999999864
Q ss_pred cceEEECCc----cCCC--hh---hhc-ccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCc
Q 006897 128 PRSITVNCH----QIKK--PA---QLR-KICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLT 197 (627)
Q Consensus 128 ~G~i~i~g~----~~~~--~~---~~r-~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~ 197 (627)
|+|.++|+ ++.. .. ++| +.++||||++.+++.+||+||+.++.... +.++++.++++.++++.+||+
T Consensus 79 -G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~l~p~~Tv~eNi~~~~~~~--g~~~~~~~~~a~e~le~vgL~ 155 (382)
T TIGR03415 79 -GSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFALMPWLTVEENVAFGLEMQ--GMPEAERRKRVDEQLELVGLA 155 (382)
T ss_pred -cEEEECCEecccccccCCHHHHHHHhcCCEEEEECCCcCCCCCcHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCc
Confidence 99999996 3321 12 233 57999999999999999999999986432 345566778899999999998
Q ss_pred cccCC----cCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhh
Q 006897 198 HVAGS----FVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISK 255 (627)
Q Consensus 198 ~~~~~----~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~ 255 (627)
+..++ ++|||+|| ||+|||+.++.++.+.|++++++.|+|||++|||++ ++.++|||
T Consensus 156 ~~~~~~~~~LSgGq~QRV~LARALa~~P~ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~-e~~~l~Dr 234 (382)
T TIGR03415 156 QWADKKPGELSGGMQQRVGLARAFAMDADILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLD-EALKIGNR 234 (382)
T ss_pred hhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCE
Confidence 76554 56999998 999999999999999999998766899999999998 58899999
Q ss_pred heeecCCeEEeeCCHHHHH
Q 006897 256 FLILSRGSVVHYGSLELLE 274 (627)
Q Consensus 256 i~vL~~G~iv~~G~~~~~~ 274 (627)
+++|++|+++..|+++++.
T Consensus 235 I~vl~~G~iv~~g~~~ei~ 253 (382)
T TIGR03415 235 IAIMEGGRIIQHGTPEEIV 253 (382)
T ss_pred EEEEECCEEEEecCHHHHh
Confidence 9999999999999998774
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=288.32 Aligned_cols=190 Identities=33% Similarity=0.517 Sum_probs=158.0
Q ss_pred EEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCc
Q 006897 57 VTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCH 136 (627)
Q Consensus 57 l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~ 136 (627)
|+++||+++|+... +.+.+|+|+||++++||+++|+||||||||||+|+|+|+++|++ |+|.++|+
T Consensus 1 l~~~~l~~~~~~~~-----------~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~---G~i~~~g~ 66 (218)
T cd03255 1 IELKNLSKTYGGGG-----------EKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTS---GEVRVDGT 66 (218)
T ss_pred CeEeeeEEEecCCC-----------cceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCc---eeEEECCE
Confidence 47899999994210 11469999999999999999999999999999999999998864 99999998
Q ss_pred cCCCh--h---h-hcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccC----CcCCc
Q 006897 137 QIKKP--A---Q-LRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAG----SFVGD 206 (627)
Q Consensus 137 ~~~~~--~---~-~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~----~~~gG 206 (627)
++... . . .++.++|++|++.+++.+||+||+.++...+ +....+.+++++++++.+||++..+ +++||
T Consensus 67 ~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G 144 (218)
T cd03255 67 DISKLSEKELAAFRRRHIGFVFQSFNLLPDLTALENVELPLLLA--GVPKKERRERAEELLERVGLGDRLNHYPSELSGG 144 (218)
T ss_pred ehhhcchhHHHHHHhhcEEEEeeccccCCCCcHHHHHHHHHhhc--CCCHHHHHHHHHHHHHHcCCchhhhcChhhcCHH
Confidence 86321 1 1 3467999999999999999999999875432 2233445678899999999976544 46699
Q ss_pred cccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeE
Q 006897 207 EENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSV 264 (627)
Q Consensus 207 e~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~i 264 (627)
|+|| ||+|||+.++..+.+.|++++++.|+|||++||+++. +. +||++++|++|++
T Consensus 145 ~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~-~~-~~d~v~~l~~G~i 218 (218)
T cd03255 145 QQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPEL-AE-YADRIIELRDGKI 218 (218)
T ss_pred HHHHHHHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHH-Hh-hhcEEEEeeCCcC
Confidence 9998 9999999999999999999976458999999999984 65 9999999999974
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-34 Score=292.49 Aligned_cols=198 Identities=26% Similarity=0.410 Sum_probs=167.7
Q ss_pred EEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCc
Q 006897 57 VTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCH 136 (627)
Q Consensus 57 l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~ 136 (627)
|+++||++.|+ ++.+|+|+||++++||+++|+||||||||||+|+|+|+++|++ |+|.++|+
T Consensus 1 i~~~~l~~~~~---------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g~ 62 (252)
T TIGR03005 1 VRFSDVTKRFG---------------ILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDE---GQIQVEGE 62 (252)
T ss_pred CEEEEEEEEeC---------------CeeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCc---eEEEECCE
Confidence 47899999993 2459999999999999999999999999999999999998864 99999998
Q ss_pred cCCCh---------------hhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccC
Q 006897 137 QIKKP---------------AQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAG 201 (627)
Q Consensus 137 ~~~~~---------------~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~ 201 (627)
++... ..+++.++|++|++.+++.+|+.||+.++... ..+...++.++++.++++.+|+++..+
T Consensus 63 ~i~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~-~~~~~~~~~~~~~~~~l~~~gl~~~~~ 141 (252)
T TIGR03005 63 QLYHMPGRNGPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVL-VLGMARAEAEKRAMELLDMVGLADKAD 141 (252)
T ss_pred EccccccccccccccchhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHH-hcCCCHHHHHHHHHHHHHHcCChhHhh
Confidence 75311 24567899999999999989999999886321 112334555677899999999976544
Q ss_pred ----CcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheee
Q 006897 202 ----SFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLIL 259 (627)
Q Consensus 202 ----~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL 259 (627)
.++|||+|| ||+|||+.++..+.+.|++++++.|+|+|++||+++ ++.++|||+++|
T Consensus 142 ~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~-~~~~~~d~i~~l 220 (252)
T TIGR03005 142 HMPAQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMG-FAREFADRVCFF 220 (252)
T ss_pred cChhhcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHhcCEEEEE
Confidence 456999998 999999999999999999998756899999999998 578899999999
Q ss_pred cCCeEEeeCCHHHHH
Q 006897 260 SRGSVVHYGSLELLE 274 (627)
Q Consensus 260 ~~G~iv~~G~~~~~~ 274 (627)
++|++++.|+++++.
T Consensus 221 ~~G~i~~~g~~~~~~ 235 (252)
T TIGR03005 221 DKGRIVEQGKPDEIF 235 (252)
T ss_pred ECCEEEEeCCHHHHh
Confidence 999999999987663
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-34 Score=287.75 Aligned_cols=197 Identities=27% Similarity=0.410 Sum_probs=163.5
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
+|+++||+++|+.+. ..+.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++ |+|.++|
T Consensus 5 ~l~~~~l~~~~~~~~-----------~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~---G~i~~~g 70 (233)
T PRK11629 5 LLQCDNLCKRYQEGS-----------VQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTS---GDVIFNG 70 (233)
T ss_pred eEEEEeEEEEcCCCC-----------cceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCc---eEEEECC
Confidence 699999999994210 12469999999999999999999999999999999999998864 9999999
Q ss_pred ccCCC--hh---hhc-ccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccC----CcCC
Q 006897 136 HQIKK--PA---QLR-KICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAG----SFVG 205 (627)
Q Consensus 136 ~~~~~--~~---~~r-~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~----~~~g 205 (627)
+++.. .. ..+ +.++|++|++.+++.+|++||+.+..... +..+++.++++.++++.+||++..+ .++|
T Consensus 71 ~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSg 148 (233)
T PRK11629 71 QPMSKLSSAAKAELRNQKLGFIYQFHHLLPDFTALENVAMPLLIG--KKKPAEINSRALEMLAAVGLEHRANHRPSELSG 148 (233)
T ss_pred EEcCcCCHHHHHHHHhccEEEEecCcccCCCCCHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCchhhhCChhhCCH
Confidence 88632 11 123 67999999999999999999999865432 2234455678999999999976554 4569
Q ss_pred ccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEee
Q 006897 206 DEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHY 267 (627)
Q Consensus 206 Ge~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~ 267 (627)
||+|| ||+|||+.++..+.+.|++++++.|+|||++|||++. +.. +|++++|++|++++.
T Consensus 149 G~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~-~~~-~~~~~~l~~G~i~~~ 226 (233)
T PRK11629 149 GERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQL-AKR-MSRQLEMRDGRLTAE 226 (233)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH-HHh-hCEEEEEECCEEEEE
Confidence 99998 9999999999999999999976568999999999983 554 689999999999987
Q ss_pred CCH
Q 006897 268 GSL 270 (627)
Q Consensus 268 G~~ 270 (627)
++.
T Consensus 227 ~~~ 229 (233)
T PRK11629 227 LSL 229 (233)
T ss_pred ecc
Confidence 763
|
|
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-34 Score=291.50 Aligned_cols=198 Identities=27% Similarity=0.377 Sum_probs=168.4
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
.|+++||++.|+ ++.+|+|+||++++||+++|+||||||||||+++|+|+++|+. |+|.++|
T Consensus 5 ~l~~~~l~~~~~---------------~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~---G~i~~~g 66 (257)
T PRK10619 5 KLNVIDLHKRYG---------------EHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSE---GSIVVNG 66 (257)
T ss_pred cEEEeeeEEEEC---------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---eEEEECC
Confidence 689999999993 2469999999999999999999999999999999999998864 9999999
Q ss_pred ccCCC---------------hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCcccc
Q 006897 136 HQIKK---------------PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVA 200 (627)
Q Consensus 136 ~~~~~---------------~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~ 200 (627)
+++.. ...+++.++|++|++.+++.+||+||+.++... .....+++.++++.++++.+|+.+..
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~-~~~~~~~~~~~~~~~~l~~~gl~~~~ 145 (257)
T PRK10619 67 QTINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQ-VLGLSKQEARERAVKYLAKVGIDERA 145 (257)
T ss_pred EEcccccccccccccccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHHcCCChhh
Confidence 87531 124567899999999999989999999875421 11224455677889999999997642
Q ss_pred -----CCcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhhe
Q 006897 201 -----GSFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFL 257 (627)
Q Consensus 201 -----~~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~ 257 (627)
..++|||+|| ||+|||+.++..+.++|+++++ .|+|||++|||++ ++.++|||++
T Consensus 146 ~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~-~g~tiiivsH~~~-~~~~~~d~i~ 223 (257)
T PRK10619 146 QGKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAE-EGKTMVVVTHEMG-FARHVSSHVI 223 (257)
T ss_pred hhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCHH-HHHHhcCEEE
Confidence 3466999998 9999999999999999999975 4899999999998 5788999999
Q ss_pred eecCCeEEeeCCHHHHH
Q 006897 258 ILSRGSVVHYGSLELLE 274 (627)
Q Consensus 258 vL~~G~iv~~G~~~~~~ 274 (627)
+|++|++++.|+++++.
T Consensus 224 ~l~~G~i~~~~~~~~~~ 240 (257)
T PRK10619 224 FLHQGKIEEEGAPEQLF 240 (257)
T ss_pred EEECCEEEEeCCHHHhh
Confidence 99999999999987763
|
|
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-32 Score=332.52 Aligned_cols=202 Identities=24% Similarity=0.395 Sum_probs=176.7
Q ss_pred ceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEEC
Q 006897 55 CKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVN 134 (627)
Q Consensus 55 ~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~ 134 (627)
..|+++||++.|+. +++.+|+|+||++++||+++|+||||||||||+|+|+|+++|++ |+|.++
T Consensus 927 ~~L~I~nLsK~y~~-------------~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~Pts---G~I~i~ 990 (2272)
T TIGR01257 927 PGVCVKNLVKIFEP-------------SGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTS---GTVLVG 990 (2272)
T ss_pred ceEEEEeEEEEecC-------------CCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCc---eEEEEC
Confidence 47999999999941 23569999999999999999999999999999999999999864 999999
Q ss_pred CccCCC-hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccC----CcCCcccc
Q 006897 135 CHQIKK-PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAG----SFVGDEEN 209 (627)
Q Consensus 135 g~~~~~-~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~----~~~gGe~q 209 (627)
|+++.. ..+.|+.+||+||++.+++.+||+||+.+.++++ +.+.++.+++++++++.+||++..+ +++|||||
T Consensus 991 G~dI~~~~~~~r~~IG~~pQ~~~L~~~LTV~E~L~f~~~lk--g~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqKQ 1068 (2272)
T TIGR01257 991 GKDIETNLDAVRQSLGMCPQHNILFHHLTVAEHILFYAQLK--GRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQR 1068 (2272)
T ss_pred CEECcchHHHHhhcEEEEecCCcCCCCCCHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHH
Confidence 998643 3456788999999999999999999999987543 3345566778999999999987655 45699999
Q ss_pred C------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeCCHH
Q 006897 210 R------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGSLE 271 (627)
Q Consensus 210 r------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~ 271 (627)
| ||+|||+.+++.++++|++++ .|+|||++||+++ ++..+|||+++|++|+++..|+++
T Consensus 1069 RLsLArALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~--~g~TIIltTHdmd-ea~~laDrI~iL~~GkL~~~Gs~~ 1145 (2272)
T TIGR01257 1069 KLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYR--SGRTIIMSTHHMD-EADLLGDRIAIISQGRLYCSGTPL 1145 (2272)
T ss_pred HHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHh--CCCEEEEEECCHH-HHHHhCCEEEEEECCEEEEecCHH
Confidence 9 999999999999999999994 3899999999998 588899999999999999999999
Q ss_pred HHHHHH
Q 006897 272 LLEETI 277 (627)
Q Consensus 272 ~~~~~~ 277 (627)
++.+.+
T Consensus 1146 ~Lk~~~ 1151 (2272)
T TIGR01257 1146 FLKNCF 1151 (2272)
T ss_pred HHHHhc
Confidence 887655
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-34 Score=290.09 Aligned_cols=198 Identities=25% Similarity=0.453 Sum_probs=168.6
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
+|+++||+++|+ ++.+|+|+||++++||+++|+||||||||||+++|+|+++|++ |+|.++|
T Consensus 3 ~l~~~~l~~~~~---------------~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g 64 (241)
T PRK10895 3 TLTAKNLAKAYK---------------GRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDA---GNIIIDD 64 (241)
T ss_pred eEEEeCcEEEeC---------------CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCC---cEEEECC
Confidence 689999999993 2469999999999999999999999999999999999998864 9999999
Q ss_pred ccCCC--h-hhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccC----CcCCccc
Q 006897 136 HQIKK--P-AQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAG----SFVGDEE 208 (627)
Q Consensus 136 ~~~~~--~-~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~----~~~gGe~ 208 (627)
.++.. . ...++.++|++|++.+++.+||.||+.+..... .....++.+++++++++.+|+++..+ .++|||+
T Consensus 65 ~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~ 143 (241)
T PRK10895 65 EDISLLPLHARARRGIGYLPQEASIFRRLSVYDNLMAVLQIR-DDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGER 143 (241)
T ss_pred EECCCCCHHHHHHhCeEEeccCCcccccCcHHHHHhhhhhcc-cccCHHHHHHHHHHHHHHcCCHHHhhcchhhCCHHHH
Confidence 88632 1 224678999999999998899999998864322 11234455678899999999976544 4679999
Q ss_pred cC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeCCH
Q 006897 209 NR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGSL 270 (627)
Q Consensus 209 qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~ 270 (627)
|| ||+|||+.++..+.+.|+++++ .|+|||++||+++ ++.++||++++|++|++++.|++
T Consensus 144 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~g~tiii~sH~~~-~~~~~~d~v~~l~~G~i~~~~~~ 221 (241)
T PRK10895 144 RRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRD-SGLGVLITDHNVR-ETLAVCERAYIVSQGHLIAHGTP 221 (241)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-cCCEEEEEEcCHH-HHHHhcCEEEEEeCCeEEeeCCH
Confidence 98 9999999999999999999875 5899999999997 58899999999999999999998
Q ss_pred HHHH
Q 006897 271 ELLE 274 (627)
Q Consensus 271 ~~~~ 274 (627)
+++.
T Consensus 222 ~~~~ 225 (241)
T PRK10895 222 TEIL 225 (241)
T ss_pred HHHh
Confidence 7763
|
|
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-34 Score=294.81 Aligned_cols=199 Identities=27% Similarity=0.465 Sum_probs=168.7
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
+++++||+++|+. .+.+|+|+||++++||+++|+||||||||||+|+|+|+++|++ |+|.++|
T Consensus 3 ~l~~~~l~~~~~~--------------~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~---G~i~~~g 65 (277)
T PRK13652 3 LIETRDLCYSYSG--------------SKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTS---GSVLIRG 65 (277)
T ss_pred eEEEEEEEEEeCC--------------CCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCc---eEEEECC
Confidence 6899999999941 2358999999999999999999999999999999999999864 9999999
Q ss_pred ccCCC--hhhhcccEEEEccCCC-CCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccC----CcCCccc
Q 006897 136 HQIKK--PAQLRKICGFVAQEDN-LLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAG----SFVGDEE 208 (627)
Q Consensus 136 ~~~~~--~~~~r~~ig~v~Q~~~-l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~----~~~gGe~ 208 (627)
+++.. ...+++.+||++|++. .+...||.||+.+..... +.+.++.+++++++++.+||.+..+ .++|||+
T Consensus 66 ~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~ 143 (277)
T PRK13652 66 EPITKENIREVRKFVGLVFQNPDDQIFSPTVEQDIAFGPINL--GLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEK 143 (277)
T ss_pred EECCcCCHHHHHhheEEEecCcccccccccHHHHHHhHHHHc--CCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHH
Confidence 88632 2456778999999963 233579999998865321 3345556678899999999976544 4569999
Q ss_pred cC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeCCH
Q 006897 209 NR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGSL 270 (627)
Q Consensus 209 qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~ 270 (627)
|| ||+|||+.++..+.+.|++++++.|+|||++||+++ ++.++|||+++|++|++++.|++
T Consensus 144 qrl~laraL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~-~~~~~~drv~~l~~G~i~~~g~~ 222 (277)
T PRK13652 144 KRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLD-LVPEMADYIYVMDKGRIVAYGTV 222 (277)
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEECCeEEEECCH
Confidence 98 999999999999999999998756899999999998 58899999999999999999999
Q ss_pred HHHH
Q 006897 271 ELLE 274 (627)
Q Consensus 271 ~~~~ 274 (627)
+++.
T Consensus 223 ~~~~ 226 (277)
T PRK13652 223 EEIF 226 (277)
T ss_pred HHHh
Confidence 8874
|
|
| >COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-34 Score=264.98 Aligned_cols=193 Identities=28% Similarity=0.455 Sum_probs=168.7
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
.|+++++++..... .+..+||++|++.|++||.+||+|||||||||||-+++|+..|++ |+|.+.|
T Consensus 6 ii~~~~l~ktvg~~-----------~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ss---GeV~l~G 71 (228)
T COG4181 6 IIEVHHLSKTVGQG-----------EGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSS---GEVRLLG 71 (228)
T ss_pred eeehhhhhhhhcCC-----------CcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCC---ceEEEcC
Confidence 68999999988543 255689999999999999999999999999999999999998864 9999999
Q ss_pred ccCCC-----hhhhc-ccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccC----CcCC
Q 006897 136 HQIKK-----PAQLR-KICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAG----SFVG 205 (627)
Q Consensus 136 ~~~~~-----~~~~r-~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~----~~~g 205 (627)
+++.+ ...+| +++|+|||...+.|+||..||+..++.++. ....+..+.+.+.|+.+||.+..+ +++|
T Consensus 72 ~~L~~ldEd~rA~~R~~~vGfVFQSF~Lip~ltAlENV~lPleL~g--e~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSG 149 (228)
T COG4181 72 QPLHKLDEDARAALRARHVGFVFQSFHLIPNLTALENVALPLELRG--ESSADSRAGAKALLEAVGLGKRLTHYPAQLSG 149 (228)
T ss_pred cchhhcCHHHHHHhhccceeEEEEeeeccccchhhhhccchhhhcC--CccccHHHHHHHHHHHhCcccccccCccccCc
Confidence 98743 12344 689999999999999999999999987653 234556677899999999976554 5569
Q ss_pred ccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEe
Q 006897 206 DEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVH 266 (627)
Q Consensus 206 Ge~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~ 266 (627)
||+|| ||.+||..+..+|.++|-.+.++.|+|.|++|||+. +...|||++-|.+|+++.
T Consensus 150 GEQQRVAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~--LA~Rc~R~~r~~~G~l~~ 226 (228)
T COG4181 150 GEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQ--LAARCDRQLRLRSGRLVE 226 (228)
T ss_pred hHHHHHHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHH--HHHhhhheeeeecceecc
Confidence 99999 999999999999999999999999999999999997 578899999999999975
|
|
| >PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-34 Score=293.07 Aligned_cols=202 Identities=27% Similarity=0.417 Sum_probs=168.7
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
+|+++||+++|+ ++.+|+|+||++++||+++|+||||||||||+++|+|+++|+..++|+|.++|
T Consensus 4 ~l~~~nl~~~~~---------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g 68 (262)
T PRK09984 4 IIRVEKLAKTFN---------------QHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLG 68 (262)
T ss_pred EEEEeeEEEEeC---------------CeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECC
Confidence 799999999993 34699999999999999999999999999999999999988643459999999
Q ss_pred ccCCC-------hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcC------CCCCHHHHHHHHHHHHHHcCCccccC-
Q 006897 136 HQIKK-------PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRL------KGMSHKEKEDRVESLMDELGLTHVAG- 201 (627)
Q Consensus 136 ~~~~~-------~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~------~~~~~~~~~~~v~~~l~~lgL~~~~~- 201 (627)
+++.. ....++.++|+||++.+++.+||.||+.+...... .....++.+++++++++.+||.+..+
T Consensus 69 ~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~ 148 (262)
T PRK09984 69 RTVQREGRLARDIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQ 148 (262)
T ss_pred EecccccccchhHHHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhC
Confidence 87532 12446789999999999998999999987642100 01112344567899999999976544
Q ss_pred ---CcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeec
Q 006897 202 ---SFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILS 260 (627)
Q Consensus 202 ---~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~ 260 (627)
.++|||+|| ||+|||+.++..+.+.|++++++.|+|||++|||++ ++.++||++++|+
T Consensus 149 ~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~-~~~~~~d~i~~l~ 227 (262)
T PRK09984 149 RVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVD-YALRYCERIVALR 227 (262)
T ss_pred CccccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEE
Confidence 456999998 999999999999999999998656899999999998 4889999999999
Q ss_pred CCeEEeeCCHHHH
Q 006897 261 RGSVVHYGSLELL 273 (627)
Q Consensus 261 ~G~iv~~G~~~~~ 273 (627)
+|++++.|+++++
T Consensus 228 ~g~i~~~g~~~~~ 240 (262)
T PRK09984 228 QGHVFYDGSSQQF 240 (262)
T ss_pred CCEEEEeCCHHHh
Confidence 9999999998764
|
|
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-34 Score=295.68 Aligned_cols=199 Identities=24% Similarity=0.385 Sum_probs=169.1
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
+|+++||++.|+. ..+.+|+|+||+|++||+++|+||||||||||+++|+|+++|+. |+|.++|
T Consensus 5 ~l~~~~l~~~~~~-------------~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~---G~i~~~g 68 (279)
T PRK13635 5 IIRVEHISFRYPD-------------AATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEA---GTITVGG 68 (279)
T ss_pred eEEEEEEEEEeCC-------------CCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCC---cEEEECC
Confidence 6999999999942 12459999999999999999999999999999999999999864 9999999
Q ss_pred ccCCC--hhhhcccEEEEccCC-CCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccC----CcCCccc
Q 006897 136 HQIKK--PAQLRKICGFVAQED-NLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAG----SFVGDEE 208 (627)
Q Consensus 136 ~~~~~--~~~~r~~ig~v~Q~~-~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~----~~~gGe~ 208 (627)
+++.. ....++.+||++|++ .+++..||.||+.++.... +.+.++.+++++++++.+||++..+ .++|||+
T Consensus 69 ~~i~~~~~~~~~~~i~~~~q~~~~~~~~~tv~enl~~~~~~~--~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~ 146 (279)
T PRK13635 69 MVLSEETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFGLENI--GVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQK 146 (279)
T ss_pred EECCcCcHHHHhhheEEEEeCHHHhcccccHHHHHhhhHhhC--CCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHH
Confidence 98643 234567899999997 3666789999999875332 2345566778999999999987554 4569999
Q ss_pred cC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeCCH
Q 006897 209 NR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGSL 270 (627)
Q Consensus 209 qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~ 270 (627)
|| ||+|||+.++..++++|++++++.|+|||++||+++. +. .|||+++|++|++++.|++
T Consensus 147 qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~-~~-~~d~i~~l~~G~i~~~g~~ 224 (279)
T PRK13635 147 QRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDE-AA-QADRVIVMNKGEILEEGTP 224 (279)
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHH-HH-cCCEEEEEECCEEEEECCH
Confidence 98 9999999999999999999987668999999999984 65 5999999999999999998
Q ss_pred HHHH
Q 006897 271 ELLE 274 (627)
Q Consensus 271 ~~~~ 274 (627)
+++.
T Consensus 225 ~~~~ 228 (279)
T PRK13635 225 EEIF 228 (279)
T ss_pred HHHh
Confidence 8764
|
|
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-34 Score=290.83 Aligned_cols=200 Identities=22% Similarity=0.360 Sum_probs=166.7
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
+|+++|+++.|+ ++.+|+|+||++++||+++|+||||||||||+++|+|+++|++ |+|.++|
T Consensus 5 ~l~~~~l~~~~~---------------~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~---G~i~~~g 66 (255)
T PRK11300 5 LLSVSGLMMRFG---------------GLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTG---GTILLRG 66 (255)
T ss_pred eEEEeeEEEEEC---------------CEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCc---ceEEECC
Confidence 799999999993 2469999999999999999999999999999999999999864 9999999
Q ss_pred ccCCC--hhh-hcccEEEEccCCCCCCCCCHHHHHHHHHHhcC--------CC---C--CHHHHHHHHHHHHHHcCCccc
Q 006897 136 HQIKK--PAQ-LRKICGFVAQEDNLLPLLTVKETLMFSANFRL--------KG---M--SHKEKEDRVESLMDELGLTHV 199 (627)
Q Consensus 136 ~~~~~--~~~-~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~--------~~---~--~~~~~~~~v~~~l~~lgL~~~ 199 (627)
+++.. ... .+..++|++|++.+++.+||+||+.++..... .. . ...+..+++.++++.+||.+.
T Consensus 67 ~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~ 146 (255)
T PRK11300 67 QHIEGLPGHQIARMGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEH 146 (255)
T ss_pred EECCCCCHHHHHhcCeEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhh
Confidence 88632 122 34569999999999999999999998642110 00 0 112334578889999999765
Q ss_pred cC----CcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhhe
Q 006897 200 AG----SFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFL 257 (627)
Q Consensus 200 ~~----~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~ 257 (627)
.+ .++|||+|| ||+|||+.++..+.+.|++++++.|+|||++||+++ ++.++||+++
T Consensus 147 ~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~-~~~~~~d~i~ 225 (255)
T PRK11300 147 ANRQAGNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMK-LVMGISDRIY 225 (255)
T ss_pred hhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHH-HHHHhCCEEE
Confidence 54 456999998 999999999999999999997655899999999998 5889999999
Q ss_pred eecCCeEEeeCCHHHHH
Q 006897 258 ILSRGSVVHYGSLELLE 274 (627)
Q Consensus 258 vL~~G~iv~~G~~~~~~ 274 (627)
+|++|++++.|+++++.
T Consensus 226 ~l~~g~i~~~~~~~~~~ 242 (255)
T PRK11300 226 VVNQGTPLANGTPEEIR 242 (255)
T ss_pred EEECCeEEecCCHHHHh
Confidence 99999999999987763
|
|
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-34 Score=289.50 Aligned_cols=201 Identities=25% Similarity=0.390 Sum_probs=167.1
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC--CCccceEEE
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQ--DFDPRSITV 133 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~--~~~~G~i~i 133 (627)
+|+++||+++|+ ++.+|+|+||++++||+++|+||||||||||+++|+|+++|. ..+.|+|.+
T Consensus 3 ~l~~~~l~~~~~---------------~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~ 67 (250)
T PRK14247 3 KIEIRDLKVSFG---------------QVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYL 67 (250)
T ss_pred eEEEEeeEEEEC---------------CeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEE
Confidence 589999999993 245999999999999999999999999999999999998752 113499999
Q ss_pred CCccCCC--hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCcc--------ccCCc
Q 006897 134 NCHQIKK--PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTH--------VAGSF 203 (627)
Q Consensus 134 ~g~~~~~--~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~--------~~~~~ 203 (627)
+|+++.. ...+++.+||++|++.+++.+||.||+.++..........++..+++.++++.+||.+ ....+
T Consensus 68 ~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~L 147 (250)
T PRK14247 68 DGQDIFKMDVIELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKL 147 (250)
T ss_pred CCEECCcCCHHHHhccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccC
Confidence 9988632 3456778999999998888899999999875332111133455677899999999853 22456
Q ss_pred CCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEE
Q 006897 204 VGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVV 265 (627)
Q Consensus 204 ~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv 265 (627)
+|||+|| ||+|||+.++..+.+.|++++ + |+|+|++||+++ ++.++||++++|++|+++
T Consensus 148 SgG~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~-~-~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~ 224 (250)
T PRK14247 148 SGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELK-K-DMTIVLVTHFPQ-QAARISDYVAFLYKGQIV 224 (250)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-c-CCEEEEEeCCHH-HHHHhcCEEEEEECCeEE
Confidence 7999998 999999999999999999985 3 789999999998 478899999999999999
Q ss_pred eeCCHHHHH
Q 006897 266 HYGSLELLE 274 (627)
Q Consensus 266 ~~G~~~~~~ 274 (627)
+.|+++++.
T Consensus 225 ~~g~~~~~~ 233 (250)
T PRK14247 225 EWGPTREVF 233 (250)
T ss_pred EECCHHHHH
Confidence 999988764
|
|
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-34 Score=295.76 Aligned_cols=203 Identities=21% Similarity=0.321 Sum_probs=170.7
Q ss_pred ceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEEC
Q 006897 55 CKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVN 134 (627)
Q Consensus 55 ~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~ 134 (627)
.+|+++|+++.|+. ..+.+|+|+||+|++||+++|+||||||||||+++|+|+++|+....|+|.++
T Consensus 4 ~~l~i~~l~~~~~~-------------~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~ 70 (282)
T PRK13640 4 NIVEFKHVSFTYPD-------------SKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVD 70 (282)
T ss_pred ceEEEEEEEEEcCC-------------CCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEEC
Confidence 37999999999942 12358999999999999999999999999999999999998864223899999
Q ss_pred CccCCC--hhhhcccEEEEccCCC-CCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccC----CcCCcc
Q 006897 135 CHQIKK--PAQLRKICGFVAQEDN-LLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAG----SFVGDE 207 (627)
Q Consensus 135 g~~~~~--~~~~r~~ig~v~Q~~~-l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~----~~~gGe 207 (627)
|+++.. ....++++||++|++. +++..||.||+.+.... .+.+.++.+++++++++.+||++..+ .++|||
T Consensus 71 g~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~enl~~~~~~--~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~G~ 148 (282)
T PRK13640 71 GITLTAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLEN--RAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQ 148 (282)
T ss_pred CEECCcCCHHHHHhheEEEEECHHHhhccCCHHHHHHhhHHh--CCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHH
Confidence 998642 2346678999999974 56678999999986432 23355666778999999999987655 456999
Q ss_pred ccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeCC
Q 006897 208 ENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGS 269 (627)
Q Consensus 208 ~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~ 269 (627)
+|| ||+|||+.++..+.+.|++++++.|+|||++||+++. + ..||++++|++|++++.|+
T Consensus 149 ~qrv~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~-~-~~~d~i~~l~~G~i~~~g~ 226 (282)
T PRK13640 149 KQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDE-A-NMADQVLVLDDGKLLAQGS 226 (282)
T ss_pred HHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH-H-HhCCEEEEEECCEEEEeCC
Confidence 998 9999999999999999999987668999999999984 5 5799999999999999999
Q ss_pred HHHHH
Q 006897 270 LELLE 274 (627)
Q Consensus 270 ~~~~~ 274 (627)
++++.
T Consensus 227 ~~~~~ 231 (282)
T PRK13640 227 PVEIF 231 (282)
T ss_pred HHHHh
Confidence 98764
|
|
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-34 Score=291.84 Aligned_cols=187 Identities=21% Similarity=0.344 Sum_probs=161.8
Q ss_pred ceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEEC
Q 006897 55 CKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVN 134 (627)
Q Consensus 55 ~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~ 134 (627)
..|+++||+++|+ ++.+|+|+||++++||+++|+||||||||||+|+|+|+++|++ |+|.++
T Consensus 11 ~~l~i~~l~~~~~---------------~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~---G~i~~~ 72 (257)
T PRK11247 11 TPLLLNAVSKRYG---------------ERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSA---GELLAG 72 (257)
T ss_pred CcEEEEEEEEEEC---------------CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCC---eEEEEC
Confidence 3699999999993 2459999999999999999999999999999999999998864 999999
Q ss_pred CccCCChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccC----CcCCccccC
Q 006897 135 CHQIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAG----SFVGDEENR 210 (627)
Q Consensus 135 g~~~~~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~----~~~gGe~qr 210 (627)
|.++ ..+++.++|++|++.+++.+||+||+.++.. ...++++.++++.+||.+..+ .++|||+||
T Consensus 73 g~~~---~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~--------~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqr 141 (257)
T PRK11247 73 TAPL---AEAREDTRLMFQDARLLPWKKVIDNVGLGLK--------GQWRDAALQALAAVGLADRANEWPAALSGGQKQR 141 (257)
T ss_pred CEEH---HHhhCceEEEecCccCCCCCcHHHHHHhccc--------chHHHHHHHHHHHcCChhHhcCChhhCCHHHHHH
Confidence 8763 3456789999999999988999999987521 112457889999999976544 456999998
Q ss_pred ------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeCCHH
Q 006897 211 ------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGSLE 271 (627)
Q Consensus 211 ------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~ 271 (627)
||+|||+.++..+.+.|++++++.|+|||++|||++ ++.++||++++|++|++++.|+.+
T Consensus 142 l~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~-~~~~~~d~i~~l~~G~i~~~~~~~ 219 (257)
T PRK11247 142 VALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVS-EAVAMADRVLLIEEGKIGLDLTVD 219 (257)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEeecccc
Confidence 999999999999999999997666899999999998 478899999999999999988654
|
|
| >PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-34 Score=300.35 Aligned_cols=207 Identities=22% Similarity=0.313 Sum_probs=168.2
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC-CCccceEEEC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQ-DFDPRSITVN 134 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~-~~~~G~i~i~ 134 (627)
+|+++||+++|..+ ++...+|+||||+|++||++||+|+||||||||+++|+|++++. ..+.|+|.++
T Consensus 3 ~L~v~~l~~~y~~~-----------~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~ 71 (330)
T PRK15093 3 LLDIRNLTIEFKTS-----------DGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFD 71 (330)
T ss_pred eEEEeeeEEEEeCC-----------CCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEEC
Confidence 68999999999532 12356999999999999999999999999999999999998742 1245999999
Q ss_pred CccCCC--hhh---h-cccEEEEccCCC--CCCCCCHHHHHHHHHHhc-CCC---CCHHHHHHHHHHHHHHcCCccc---
Q 006897 135 CHQIKK--PAQ---L-RKICGFVAQEDN--LLPLLTVKETLMFSANFR-LKG---MSHKEKEDRVESLMDELGLTHV--- 199 (627)
Q Consensus 135 g~~~~~--~~~---~-r~~ig~v~Q~~~--l~~~lTV~e~l~~~~~~~-~~~---~~~~~~~~~v~~~l~~lgL~~~--- 199 (627)
|+++.. ..+ + ++.++||||++. +.|.+||.+++....... ..+ ....+.++++.++|+.+||.+.
T Consensus 72 g~~i~~~~~~~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~ 151 (330)
T PRK15093 72 DIDLLRLSPRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDA 151 (330)
T ss_pred CEECCcCCHHHHHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHH
Confidence 998642 222 2 357999999975 678899999998643211 111 1123456789999999999642
Q ss_pred ----cCCcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhhe
Q 006897 200 ----AGSFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFL 257 (627)
Q Consensus 200 ----~~~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~ 257 (627)
...++|||+|| ||+|||+.++.+++++|+++.++.|.|||+||||++ .+.++|||++
T Consensus 152 ~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~-~v~~~~dri~ 230 (330)
T PRK15093 152 MRSFPYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQ-MLSQWADKIN 230 (330)
T ss_pred HhCCchhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEE
Confidence 24567999999 999999999999999999998766999999999998 4889999999
Q ss_pred eecCCeEEeeCCHHHHH
Q 006897 258 ILSRGSVVHYGSLELLE 274 (627)
Q Consensus 258 vL~~G~iv~~G~~~~~~ 274 (627)
+|++|++++.|+++++.
T Consensus 231 vm~~G~ive~g~~~~i~ 247 (330)
T PRK15093 231 VLYCGQTVETAPSKELV 247 (330)
T ss_pred EEECCEEEEECCHHHHH
Confidence 99999999999988764
|
|
| >PRK11248 tauB taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-34 Score=290.80 Aligned_cols=192 Identities=24% Similarity=0.398 Sum_probs=163.5
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
+|+++|++++|+ ++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++ |+|.++|
T Consensus 1 ml~~~~l~~~~~---------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~---G~i~~~g 62 (255)
T PRK11248 1 MLQISHLYADYG---------------GKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQH---GSITLDG 62 (255)
T ss_pred CEEEEEEEEEeC---------------CeeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---cEEEECC
Confidence 478999999993 2459999999999999999999999999999999999998864 9999999
Q ss_pred ccCCChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccC----CcCCccccC-
Q 006897 136 HQIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAG----SFVGDEENR- 210 (627)
Q Consensus 136 ~~~~~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~----~~~gGe~qr- 210 (627)
+++.. .++.+||++|++.+++.+||.||+.+....+ +...++..+++.++++.+||.+..+ .++|||+||
T Consensus 63 ~~~~~---~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl 137 (255)
T PRK11248 63 KPVEG---PGAERGVVFQNEGLLPWRNVQDNVAFGLQLA--GVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRV 137 (255)
T ss_pred EECCC---CCCcEEEEeCCCccCCCCcHHHHHHhHHHHc--CCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHH
Confidence 88532 2346899999999998899999998865322 2344555678999999999976544 456999998
Q ss_pred -----------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeec--CCeEEeeCCHH
Q 006897 211 -----------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILS--RGSVVHYGSLE 271 (627)
Q Consensus 211 -----------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~--~G~iv~~G~~~ 271 (627)
||+|||+.++..+.+.|++++++.|+|||++|||++ ++.++||++++|+ +|++++.++.+
T Consensus 138 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~-~~~~~~d~i~~l~~~~G~i~~~~~~~ 216 (255)
T PRK11248 138 GIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIE-EAVFMATELVLLSPGPGRVVERLPLN 216 (255)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeCCCcEEEEEecCC
Confidence 999999999999999999986556899999999998 5889999999998 59999887653
|
|
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-34 Score=293.05 Aligned_cols=200 Identities=20% Similarity=0.352 Sum_probs=167.8
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
+|+++||+++|+ ++.+|+|+||++++||+++|+||||||||||+|+|+|+++|++ |+|.++|
T Consensus 11 ~l~i~~l~~~~~---------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~---G~i~~~g 72 (265)
T PRK10575 11 TFALRNVSFRVP---------------GRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSE---GEILLDA 72 (265)
T ss_pred eEEEeeEEEEEC---------------CEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCC---CEEEECC
Confidence 799999999993 2469999999999999999999999999999999999998864 9999999
Q ss_pred ccCCC--hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCC--CCCHHHHHHHHHHHHHHcCCccccC----CcCCcc
Q 006897 136 HQIKK--PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLK--GMSHKEKEDRVESLMDELGLTHVAG----SFVGDE 207 (627)
Q Consensus 136 ~~~~~--~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~--~~~~~~~~~~v~~~l~~lgL~~~~~----~~~gGe 207 (627)
+++.. ...+++.++|++|++.+++.+|+.||+.++...... +..+.+.+++++++++.+||++..+ .++|||
T Consensus 73 ~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~ 152 (265)
T PRK10575 73 QPLESWSSKAFARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGE 152 (265)
T ss_pred EehhhCCHHHHhhheEEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCCHHH
Confidence 87532 345667899999998888889999999875311100 1112334567899999999976544 466999
Q ss_pred ccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeCC
Q 006897 208 ENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGS 269 (627)
Q Consensus 208 ~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~ 269 (627)
+|| ||+|||+.++..+.+.|++++++.|+|||++||+++ ++.++||++++|++|++++.|+
T Consensus 153 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~-~i~~~~d~i~~l~~G~i~~~~~ 231 (265)
T PRK10575 153 RQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDIN-MAARYCDYLVALRGGEMIAQGT 231 (265)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCeEEEecC
Confidence 998 999999999999999999997655899999999998 5889999999999999999998
Q ss_pred HHHHH
Q 006897 270 LELLE 274 (627)
Q Consensus 270 ~~~~~ 274 (627)
++++.
T Consensus 232 ~~~~~ 236 (265)
T PRK10575 232 PAELM 236 (265)
T ss_pred HHHhc
Confidence 87653
|
|
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-34 Score=286.18 Aligned_cols=197 Identities=27% Similarity=0.375 Sum_probs=158.4
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
+|+++||+++|..+. ....+|+|+||++++||+++|+||||||||||+++|+|+++|+. |+|.++|
T Consensus 1 ~l~~~~v~~~~~~~~-----------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g 66 (228)
T cd03257 1 LLEVKNLSVSFPTGG-----------GSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTS---GSIIFDG 66 (228)
T ss_pred CeEEEeeeEeccCCC-----------cceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---ceEEECC
Confidence 478999999994210 11259999999999999999999999999999999999998864 9999999
Q ss_pred ccCCCh-----hhhcccEEEEccCC--CCCCCCCHHHHHHHHHHhcCCCCCHHHHHHH-HHHHHHHcCCc-ccc----CC
Q 006897 136 HQIKKP-----AQLRKICGFVAQED--NLLPLLTVKETLMFSANFRLKGMSHKEKEDR-VESLMDELGLT-HVA----GS 202 (627)
Q Consensus 136 ~~~~~~-----~~~r~~ig~v~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~-v~~~l~~lgL~-~~~----~~ 202 (627)
+++... ...++.++|++|++ .+++.+||+||+.+........ ..++..++ ++++++.+++. +.. ..
T Consensus 67 ~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 145 (228)
T cd03257 67 KDLLKLSRRLRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKL-SKKEARKEAVLLLLVGVGLPEEVLNRYPHE 145 (228)
T ss_pred EEccccchhhHHHhhccEEEEecCchhhcCCcCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHHHHCCCChhHhhCCchh
Confidence 886431 34567899999998 4667899999998865432111 12222223 36889999984 343 44
Q ss_pred cCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeE
Q 006897 203 FVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSV 264 (627)
Q Consensus 203 ~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~i 264 (627)
++|||+|| ||+|||+.++..+.+.|++++++.|+|||++||+++ ++.++||++++|++|++
T Consensus 146 LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~G~i 224 (228)
T cd03257 146 LSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLG-VVAKIADRVAVMYAGKI 224 (228)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEEEEeCCEE
Confidence 66999998 999999999999999999998655899999999998 47789999999999999
Q ss_pred EeeC
Q 006897 265 VHYG 268 (627)
Q Consensus 265 v~~G 268 (627)
+..|
T Consensus 225 ~~~g 228 (228)
T cd03257 225 VEEG 228 (228)
T ss_pred EecC
Confidence 8764
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-34 Score=288.25 Aligned_cols=195 Identities=21% Similarity=0.356 Sum_probs=164.3
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
+|+++||+++|+ .+.+|+|+||++++||+++|+||||||||||+++|+|+++|++ |+|.++|
T Consensus 5 ~l~~~~l~~~~~---------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~---G~i~~~g 66 (237)
T PRK11614 5 MLSFDKVSAHYG---------------KIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATS---GRIVFDG 66 (237)
T ss_pred EEEEEeEEEeeC---------------CceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCC---ceEEECC
Confidence 799999999993 2459999999999999999999999999999999999998864 9999999
Q ss_pred ccCCC--hh-hhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHc-CCccc----cCCcCCcc
Q 006897 136 HQIKK--PA-QLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDEL-GLTHV----AGSFVGDE 207 (627)
Q Consensus 136 ~~~~~--~~-~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~l-gL~~~----~~~~~gGe 207 (627)
+++.. .. ..++.++|++|++.+++.+||.||+.++.... ..++.+++++++++.+ ++.+. .+.++|||
T Consensus 67 ~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~----~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~ 142 (237)
T PRK11614 67 KDITDWQTAKIMREAVAIVPEGRRVFSRMTVEENLAMGGFFA----ERDQFQERIKWVYELFPRLHERRIQRAGTMSGGE 142 (237)
T ss_pred EecCCCCHHHHHHhCEEEeccCcccCCCCcHHHHHHHhhhcc----ChhHHHHHHHHHHHHHHHHHHHHhCchhhCCHHH
Confidence 88633 12 25678999999999999899999998864211 1233345667777777 46543 34567999
Q ss_pred ccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeCC
Q 006897 208 ENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGS 269 (627)
Q Consensus 208 ~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~ 269 (627)
+|| ||+|||+.++..+.+.|+++++ .|+|||++||+++ ++.++|||+++|++|++++.|+
T Consensus 143 ~qrl~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~ 220 (237)
T PRK11614 143 QQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLRE-QGMTIFLVEQNAN-QALKLADRGYVLENGHVVLEDT 220 (237)
T ss_pred HHHHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHH-CCCEEEEEeCcHH-HHHhhCCEEEEEeCCEEEeeCC
Confidence 998 9999999999999999999976 4899999999998 5899999999999999999999
Q ss_pred HHHHH
Q 006897 270 LELLE 274 (627)
Q Consensus 270 ~~~~~ 274 (627)
++++.
T Consensus 221 ~~~~~ 225 (237)
T PRK11614 221 GDALL 225 (237)
T ss_pred HHHHh
Confidence 98774
|
|
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-34 Score=287.67 Aligned_cols=197 Identities=24% Similarity=0.413 Sum_probs=166.2
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
+|+++|+++.|+ ++.+|+|+||++++||+++|+||||||||||+|+|+|+.+|++ |+|.++|
T Consensus 2 ~l~~~~l~~~~~---------------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g 63 (242)
T PRK11124 2 SIQLNGINCFYG---------------AHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRS---GTLNIAG 63 (242)
T ss_pred EEEEEeeEEEEC---------------CeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCc---eEEEECC
Confidence 589999999993 2459999999999999999999999999999999999998864 9999999
Q ss_pred ccCC-----C---hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccC----Cc
Q 006897 136 HQIK-----K---PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAG----SF 203 (627)
Q Consensus 136 ~~~~-----~---~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~----~~ 203 (627)
+++. . ....++.++|++|++.+++.+||.||+.+... ...+...++..+++.++++.+|+++..+ .+
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~i~~~~~-~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~L 142 (242)
T PRK11124 64 NHFDFSKTPSDKAIRELRRNVGMVFQQYNLWPHLTVQQNLIEAPC-RVLGLSKDQALARAEKLLERLRLKPYADRFPLHL 142 (242)
T ss_pred EecccccccchhhHHHHHhheEEEecCccccCCCcHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhC
Confidence 8752 1 12456789999999999999999999975321 1112234455677899999999976554 45
Q ss_pred CCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEE
Q 006897 204 VGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVV 265 (627)
Q Consensus 204 ~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv 265 (627)
+|||+|| ||+|||+.++..+.+.|+++++ .|+|+|++||+++ ++.++||++++|++|+++
T Consensus 143 S~G~~qrv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~sh~~~-~~~~~~d~i~~l~~g~i~ 220 (242)
T PRK11124 143 SGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAE-TGITQVIVTHEVE-VARKTASRVVYMENGHIV 220 (242)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHH-cCCEEEEEeCCHH-HHHHhcCEEEEEECCEEE
Confidence 6999998 9999999999999999999975 5899999999998 478899999999999999
Q ss_pred eeCCHHHH
Q 006897 266 HYGSLELL 273 (627)
Q Consensus 266 ~~G~~~~~ 273 (627)
+.|+++++
T Consensus 221 ~~~~~~~~ 228 (242)
T PRK11124 221 EQGDASCF 228 (242)
T ss_pred EeCCHHHh
Confidence 99988754
|
|
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-33 Score=288.88 Aligned_cols=199 Identities=22% Similarity=0.348 Sum_probs=165.4
Q ss_pred ceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCC--CccceEE
Q 006897 55 CKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQD--FDPRSIT 132 (627)
Q Consensus 55 ~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~--~~~G~i~ 132 (627)
++|+++|+++.|+ ++.+|+|+||+|++||++||+||||||||||+++|+|+++|.. .+.|+|.
T Consensus 11 ~~l~~~~l~~~~~---------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~ 75 (258)
T PRK14268 11 PQIKVENLNLWYG---------------EKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVS 75 (258)
T ss_pred eeEEEeeeEEEeC---------------CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEE
Confidence 4799999999993 2459999999999999999999999999999999999987520 1249999
Q ss_pred ECCccCCC----hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCc----cc----c
Q 006897 133 VNCHQIKK----PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLT----HV----A 200 (627)
Q Consensus 133 i~g~~~~~----~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~~----~ 200 (627)
++|+++.. ...+++.+||++|++.+++ +|++||+.+....+ +.+.++.+++++++++.+|+. +. .
T Consensus 76 ~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~ 152 (258)
T PRK14268 76 IEGEDIYEPDVDVVELRKNVGMVFQKPNPFP-MSIYDNVAYGPRIH--GANKKDLDGVVENALRSAALWDETSDRLKSPA 152 (258)
T ss_pred ECCEEcccccchHHHHhhhEEEEecCCccCc-ccHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHcCCCcchhhhhcCCh
Confidence 99988532 1245678999999998888 89999999875432 234445566789999999883 22 3
Q ss_pred CCcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCC
Q 006897 201 GSFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRG 262 (627)
Q Consensus 201 ~~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G 262 (627)
..++|||+|| ||+|||+.++..+.+.|++++ + |+|||++|||++ ++.++||++++|++|
T Consensus 153 ~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~-~-~~tiiivsH~~~-~~~~~~d~i~~l~~G 229 (258)
T PRK14268 153 LSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLK-K-DYTIVIVTHNMQ-QAARISDYTGFFLMG 229 (258)
T ss_pred hhCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHh-h-CCEEEEEECCHH-HHHHhCCEEEEEECC
Confidence 4567999998 999999999999999999985 3 789999999998 478899999999999
Q ss_pred eEEeeCCHHHHH
Q 006897 263 SVVHYGSLELLE 274 (627)
Q Consensus 263 ~iv~~G~~~~~~ 274 (627)
++++.|+++++.
T Consensus 230 ~i~~~~~~~~~~ 241 (258)
T PRK14268 230 ELIEFGQTRQIF 241 (258)
T ss_pred EEEEeCCHHHHh
Confidence 999999988763
|
|
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-34 Score=294.39 Aligned_cols=201 Identities=24% Similarity=0.414 Sum_probs=167.8
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
.|+++||+++|+... ...+.+|+|+||++++||+++|+||||||||||+|+|+|+++|++ |+|.++|
T Consensus 2 ~i~~~~l~~~~~~~~----------~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~---G~i~~~g 68 (287)
T PRK13641 2 SIKFENVDYIYSPGT----------PMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSS---GTITIAG 68 (287)
T ss_pred EEEEEEEEEEcCCCC----------CccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCC---cEEEECC
Confidence 589999999994210 012469999999999999999999999999999999999999864 9999999
Q ss_pred ccCCC------hhhhcccEEEEccCC--CCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCc-cccC----C
Q 006897 136 HQIKK------PAQLRKICGFVAQED--NLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLT-HVAG----S 202 (627)
Q Consensus 136 ~~~~~------~~~~r~~ig~v~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~----~ 202 (627)
+++.. ....++.+||++|++ .++ .+||.||+.++.... +..+++..++++++++.+||+ +..+ .
T Consensus 69 ~~~~~~~~~~~~~~~~~~ig~v~q~~~~~~~-~~tv~e~l~~~~~~~--~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~ 145 (287)
T PRK13641 69 YHITPETGNKNLKKLRKKVSLVFQFPEAQLF-ENTVLKDVEFGPKNF--GFSEDEAKEKALKWLKKVGLSEDLISKSPFE 145 (287)
T ss_pred EECccccccchHHHHHhceEEEEeChhhhhc-cchHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHcCCChhHhhCCccc
Confidence 88632 234567899999996 355 479999999865332 234556677899999999996 4444 4
Q ss_pred cCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeE
Q 006897 203 FVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSV 264 (627)
Q Consensus 203 ~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~i 264 (627)
++|||+|| ||+|||+.++..+.+.|+++++ .|+|||++||+++ ++.++||++++|++|++
T Consensus 146 LSgGq~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~-~g~tvlivsH~~~-~~~~~~d~v~~l~~G~i 223 (287)
T PRK13641 146 LSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQK-AGHTVILVTHNMD-DVAEYADDVLVLEHGKL 223 (287)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCHH-HHHHhCCEEEEEECCEE
Confidence 66999999 9999999999999999999975 5899999999998 58899999999999999
Q ss_pred EeeCCHHHHH
Q 006897 265 VHYGSLELLE 274 (627)
Q Consensus 265 v~~G~~~~~~ 274 (627)
++.|+++++.
T Consensus 224 ~~~g~~~~~~ 233 (287)
T PRK13641 224 IKHASPKEIF 233 (287)
T ss_pred EEeCCHHHHh
Confidence 9999988764
|
|
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-33 Score=286.89 Aligned_cols=198 Identities=23% Similarity=0.360 Sum_probs=166.2
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
+|+++|++++|+ ++++|+|+||++++||+++|+||||||||||+++|+|+++|++ |+|.++|
T Consensus 2 ~i~~~~l~~~~~---------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~---G~i~~~g 63 (242)
T TIGR03411 2 ILYLEGLSVSFD---------------GFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDE---GSVLFGG 63 (242)
T ss_pred eEEEEeeEEEcC---------------CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCC---CeEEECC
Confidence 689999999993 2459999999999999999999999999999999999998864 9999999
Q ss_pred ccCCC--hh-hhcccEEEEccCCCCCCCCCHHHHHHHHHHhcC------CCCCHHHHHHHHHHHHHHcCCccccCC----
Q 006897 136 HQIKK--PA-QLRKICGFVAQEDNLLPLLTVKETLMFSANFRL------KGMSHKEKEDRVESLMDELGLTHVAGS---- 202 (627)
Q Consensus 136 ~~~~~--~~-~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~------~~~~~~~~~~~v~~~l~~lgL~~~~~~---- 202 (627)
+++.. .. ..++.++|++|++.+++.+||+||+.++..... .+..+++.+++++++++.+|+++..++
T Consensus 64 ~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 143 (242)
T TIGR03411 64 TDLTGLPEHQIARAGIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGL 143 (242)
T ss_pred eecCCCCHHHHHhcCeeEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCChhh
Confidence 87532 12 234579999999999999999999998643210 001223456678999999999865544
Q ss_pred cCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeE
Q 006897 203 FVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSV 264 (627)
Q Consensus 203 ~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~i 264 (627)
++|||+|| ||+|||+.++..+.+.|+++++ ++|||++||+++ ++.++||++++|++|++
T Consensus 144 LS~Ge~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~--~~tii~~sH~~~-~~~~~~d~i~~l~~g~~ 220 (242)
T TIGR03411 144 LSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAG--KHSVVVVEHDME-FVRSIADKVTVLHQGSV 220 (242)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhc--CCEEEEEECCHH-HHHHhCCEEEEEECCeE
Confidence 56999998 9999999999999999999964 689999999998 58889999999999999
Q ss_pred EeeCCHHHHH
Q 006897 265 VHYGSLELLE 274 (627)
Q Consensus 265 v~~G~~~~~~ 274 (627)
++.|+++++.
T Consensus 221 ~~~~~~~~~~ 230 (242)
T TIGR03411 221 LAEGSLDQVQ 230 (242)
T ss_pred EeeCCHHHHh
Confidence 9999987763
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-34 Score=282.88 Aligned_cols=187 Identities=28% Similarity=0.470 Sum_probs=159.0
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
+|+++|++++|+. ++.+|+|+||++++||+++|+||||||||||+++|+|+++|++ |+|.++|
T Consensus 1 ~l~~~~l~~~~~~--------------~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~---G~i~~~g 63 (214)
T TIGR02673 1 MIEFHNVSKAYPG--------------GVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSR---GQVRIAG 63 (214)
T ss_pred CEEEEeeeEEeCC--------------CceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---ceEEECC
Confidence 4789999999931 2359999999999999999999999999999999999998864 9999999
Q ss_pred ccCCC--h---hhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCcccc----CCcCCc
Q 006897 136 HQIKK--P---AQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVA----GSFVGD 206 (627)
Q Consensus 136 ~~~~~--~---~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~----~~~~gG 206 (627)
+++.. . ..+++.++|++|++.+++.+|+.||+.+....+ +...++.+++++++++.+||.+.. ..++||
T Consensus 64 ~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G 141 (214)
T TIGR02673 64 EDVNRLRGRQLPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVR--GKKEREIQRRVGAALRQVGLEHKADAFPEQLSGG 141 (214)
T ss_pred EEcccCCHHHHHHHHhheEEEecChhhccCCcHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHH
Confidence 88632 1 235678999999999998899999999875432 223445567889999999997654 356699
Q ss_pred cccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCe
Q 006897 207 EENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGS 263 (627)
Q Consensus 207 e~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~ 263 (627)
|+|| ||+|||+.++..+.+.|+++++ .|+|||++||+++ ++.++||++++|++|+
T Consensus 142 ~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~tH~~~-~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 142 EQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNK-RGTTVIVATHDLS-LVDRVAHRVIILDDGR 214 (214)
T ss_pred HHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-cCCEEEEEeCCHH-HHHHhcCEEEEecCCC
Confidence 9998 9999999999999999999875 4899999999998 5888999999999985
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=289.36 Aligned_cols=198 Identities=27% Similarity=0.464 Sum_probs=166.3
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
+|+++||+++|+ ++.+|+|+||++++||+++|+||||||||||+++|+|+++|++ |+|.++|
T Consensus 2 ~l~~~~l~~~~~---------------~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~---G~i~~~g 63 (258)
T PRK13548 2 MLEARNLSVRLG---------------GRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDS---GEVRLNG 63 (258)
T ss_pred eEEEEeEEEEeC---------------CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---CEEEECC
Confidence 689999999993 2459999999999999999999999999999999999998864 9999999
Q ss_pred ccCCC--hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccC----CcCCcccc
Q 006897 136 HQIKK--PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAG----SFVGDEEN 209 (627)
Q Consensus 136 ~~~~~--~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~----~~~gGe~q 209 (627)
+++.. ....++.++|++|++.+++.+||+||+.+..... ....++.+++++++++.+||++..+ .++|||+|
T Consensus 64 ~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGe~q 141 (258)
T PRK13548 64 RPLADWSPAELARRRAVLPQHSSLSFPFTVEEVVAMGRAPH--GLSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQ 141 (258)
T ss_pred EEcccCCHHHhhhheEEEccCCcCCCCCCHHHHHHhhhccc--CCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHH
Confidence 87532 2345678999999988878889999998864221 1122344567899999999976544 45688886
Q ss_pred C------------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEE
Q 006897 210 R------------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVV 265 (627)
Q Consensus 210 r------------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv 265 (627)
| ||+|||+.++..+.+.|++++++.|+|||++|||++ ++.++||++++|++|+++
T Consensus 142 rv~la~al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~ 220 (258)
T PRK13548 142 RVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLN-LAARYADRIVLLHQGRLV 220 (258)
T ss_pred HHHHHHHHhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhcCEEEEEECCEEE
Confidence 5 899999999999999999997446899999999998 488899999999999999
Q ss_pred eeCCHHHHH
Q 006897 266 HYGSLELLE 274 (627)
Q Consensus 266 ~~G~~~~~~ 274 (627)
+.|+++++.
T Consensus 221 ~~~~~~~~~ 229 (258)
T PRK13548 221 ADGTPAEVL 229 (258)
T ss_pred eeCCHHHHh
Confidence 999987664
|
|
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-34 Score=289.63 Aligned_cols=199 Identities=23% Similarity=0.382 Sum_probs=166.5
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
+|+++|++++|+ ++.+|+|+||++++||+++|+||||||||||+++|+|+++|++ |+|.++|
T Consensus 2 ~l~~~~l~~~~~---------------~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~---G~i~~~g 63 (255)
T PRK11231 2 TLRTENLTVGYG---------------TKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQS---GTVFLGD 63 (255)
T ss_pred EEEEEeEEEEEC---------------CEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCC---cEEEECC
Confidence 689999999993 2469999999999999999999999999999999999998864 9999999
Q ss_pred ccCC--ChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHh--cCCCCCHHHHHHHHHHHHHHcCCccccC----CcCCcc
Q 006897 136 HQIK--KPAQLRKICGFVAQEDNLLPLLTVKETLMFSANF--RLKGMSHKEKEDRVESLMDELGLTHVAG----SFVGDE 207 (627)
Q Consensus 136 ~~~~--~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~--~~~~~~~~~~~~~v~~~l~~lgL~~~~~----~~~gGe 207 (627)
+++. +...+++.++|++|+..+++.+|+.||+.++... ...+..+++..++++++++.+||++..+ .++|||
T Consensus 64 ~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~ 143 (255)
T PRK11231 64 KPISMLSSRQLARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQ 143 (255)
T ss_pred EEhHHCCHHHHhhheEEecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCcccCCHHH
Confidence 8753 2334567899999999888889999999885211 0011112344567899999999976544 456999
Q ss_pred ccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeCC
Q 006897 208 ENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGS 269 (627)
Q Consensus 208 ~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~ 269 (627)
+|| ||+|||+.++..+.+.|+++++ .|+|||++||+++ ++.++||++++|++|+++..|+
T Consensus 144 ~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~-~~~tiii~tH~~~-~~~~~~d~i~~l~~G~i~~~~~ 221 (255)
T PRK11231 144 RQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNT-QGKTVVTVLHDLN-QASRYCDHLVVLANGHVMAQGT 221 (255)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEECCHH-HHHHhcCEEEEEECCeEEEEcC
Confidence 998 9999999999999999999876 4899999999998 5889999999999999999998
Q ss_pred HHHHH
Q 006897 270 LELLE 274 (627)
Q Consensus 270 ~~~~~ 274 (627)
++++.
T Consensus 222 ~~~~~ 226 (255)
T PRK11231 222 PEEVM 226 (255)
T ss_pred HHHhc
Confidence 87663
|
|
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=288.02 Aligned_cols=200 Identities=20% Similarity=0.276 Sum_probs=165.4
Q ss_pred ceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCC--CccceEE
Q 006897 55 CKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQD--FDPRSIT 132 (627)
Q Consensus 55 ~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~--~~~G~i~ 132 (627)
.+|+++|++++|+ ++.+|+|+||++++||+++|+||||||||||+|+|+|+++|.. .+.|+|.
T Consensus 6 ~~l~~~~l~~~~~---------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~ 70 (254)
T PRK14273 6 AIIETENLNLFYT---------------DFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVI 70 (254)
T ss_pred ceEEEeeeEEEeC---------------CceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEE
Confidence 3799999999993 2359999999999999999999999999999999999998741 1249999
Q ss_pred ECCccCCC----hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCc----c----cc
Q 006897 133 VNCHQIKK----PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLT----H----VA 200 (627)
Q Consensus 133 i~g~~~~~----~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~----~~ 200 (627)
++|+++.. ....++.++|++|++.+++ +||+||+.++..... ....++.++++.++++.+++. + ..
T Consensus 71 ~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~ 148 (254)
T PRK14273 71 YEGKNIYSNNFDILELRRKIGMVFQTPNPFL-MSIYDNISYGPKIHG-TKDKKKLDEIVEQSLKKSALWNEVKDKLNTNA 148 (254)
T ss_pred ECCEecccccccHHHHhhceEEEeecccccc-CcHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhCCchhhHHHHhCCc
Confidence 99987531 2346778999999988885 899999998753321 113344567788999998872 2 23
Q ss_pred CCcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCC
Q 006897 201 GSFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRG 262 (627)
Q Consensus 201 ~~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G 262 (627)
..++|||+|| ||+|||+.++..++++|++++ + ++|||++||+++ ++.++|||+++|++|
T Consensus 149 ~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~-~~tvii~sH~~~-~~~~~~d~i~~l~~G 225 (254)
T PRK14273 149 LSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLK-E-SYTIIIVTHNMQ-QAGRISDRTAFFLNG 225 (254)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHh-c-CCEEEEEeCCHH-HHHHhCCEEEEEECC
Confidence 4567999998 999999999999999999995 3 689999999998 488999999999999
Q ss_pred eEEeeCCHHHHH
Q 006897 263 SVVHYGSLELLE 274 (627)
Q Consensus 263 ~iv~~G~~~~~~ 274 (627)
+++..|+++++.
T Consensus 226 ~i~~~g~~~~~~ 237 (254)
T PRK14273 226 CIEEESSTDELF 237 (254)
T ss_pred EEEEeCCHHHHH
Confidence 999999988764
|
|
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-33 Score=287.62 Aligned_cols=199 Identities=23% Similarity=0.332 Sum_probs=164.0
Q ss_pred ceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC--CCCCccceEE
Q 006897 55 CKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVR--DQDFDPRSIT 132 (627)
Q Consensus 55 ~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~--~~~~~~G~i~ 132 (627)
++|+++||+++|+ ++.+|+|+||++++||+++|+||||||||||+|+|+|+.+ |...+.|+|.
T Consensus 5 ~~l~~~~l~~~~~---------------~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~ 69 (253)
T PRK14242 5 PKMEARGLSFFYG---------------DFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEIL 69 (253)
T ss_pred cEEEEeeeEEEEC---------------CeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEE
Confidence 3799999999993 2359999999999999999999999999999999999864 2111349999
Q ss_pred ECCccCCC----hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCcc--------cc
Q 006897 133 VNCHQIKK----PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTH--------VA 200 (627)
Q Consensus 133 i~g~~~~~----~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~--------~~ 200 (627)
++|+++.. ...+++.++|++|++.+++ .||+||+.++...+. ....++.+++++++++.+|+.+ ..
T Consensus 70 ~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~ 147 (253)
T PRK14242 70 LDGENIYDPHVDVVELRRRVGMVFQKPNPFP-KSIFENVAYGLRVNG-VKDKAYLAERVERSLRHAALWDEVKDRLHESA 147 (253)
T ss_pred ECCEEccccccCHHHHhhcEEEEecCCCCCc-CcHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHcCCchhhhHHhhCCc
Confidence 99988632 2345678999999998888 499999998754321 1123445677889999999843 23
Q ss_pred CCcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCC
Q 006897 201 GSFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRG 262 (627)
Q Consensus 201 ~~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G 262 (627)
..++|||+|| ||+|||+.++..+.+.|++++ + ++|||++|||++ ++.++||++++|++|
T Consensus 148 ~~LSgGq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~-~~tvii~tH~~~-~~~~~~d~v~~l~~G 224 (253)
T PRK14242 148 LGLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELK-A-RYTIIIVTHNMQ-QAARVSDVTAFFYMG 224 (253)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-c-CCeEEEEEecHH-HHHHhCCEEEEEECC
Confidence 4567999998 999999999999999999994 3 689999999998 488999999999999
Q ss_pred eEEeeCCHHHH
Q 006897 263 SVVHYGSLELL 273 (627)
Q Consensus 263 ~iv~~G~~~~~ 273 (627)
++++.|+++++
T Consensus 225 ~i~~~g~~~~~ 235 (253)
T PRK14242 225 KLIEVGPTEQI 235 (253)
T ss_pred EEEEeCCHHHH
Confidence 99999998765
|
|
| >PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-33 Score=290.53 Aligned_cols=197 Identities=28% Similarity=0.477 Sum_probs=166.3
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
+|+++||+++|.. .+.+|+|+||+|++||+++|+||||||||||+|+|+|+++|.. |+|.++|
T Consensus 1 ~l~~~~l~~~~~~--------------~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~---G~i~~~g 63 (275)
T PRK13639 1 ILETRDLKYSYPD--------------GTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTS---GEVLIKG 63 (275)
T ss_pred CEEEEEEEEEeCC--------------CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCc---cEEEECC
Confidence 4789999999941 2358999999999999999999999999999999999998864 9999999
Q ss_pred ccCCC----hhhhcccEEEEccCCC--CCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccCC----cCC
Q 006897 136 HQIKK----PAQLRKICGFVAQEDN--LLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAGS----FVG 205 (627)
Q Consensus 136 ~~~~~----~~~~r~~ig~v~Q~~~--l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~----~~g 205 (627)
+++.. ....++.++|++|++. ++ ..||.||+.++.... +..+++..+++.++++.+||++..++ ++|
T Consensus 64 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~~-~~tv~e~i~~~~~~~--~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~ 140 (275)
T PRK13639 64 EPIKYDKKSLLEVRKTVGIVFQNPDDQLF-APTVEEDVAFGPLNL--GLSKEEVEKRVKEALKAVGMEGFENKPPHHLSG 140 (275)
T ss_pred EECccccchHHHHHhheEEEeeChhhhhc-cccHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHCCCchhhcCChhhCCH
Confidence 88631 1245778999999963 44 469999998864321 23445566788999999999776554 559
Q ss_pred ccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEee
Q 006897 206 DEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHY 267 (627)
Q Consensus 206 Ge~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~ 267 (627)
||+|| ||+|||+.++..+.+.|++++++ |+|||++|||++ ++.++||++++|++|++++.
T Consensus 141 Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~-~~til~vtH~~~-~~~~~~d~i~~l~~G~i~~~ 218 (275)
T PRK13639 141 GQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKE-GITIIISTHDVD-LVPVYADKVYVMSDGKIIKE 218 (275)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCHH-HHHHhCCEEEEEECCEEEEe
Confidence 99998 99999999999999999999764 899999999998 47889999999999999999
Q ss_pred CCHHHHH
Q 006897 268 GSLELLE 274 (627)
Q Consensus 268 G~~~~~~ 274 (627)
|+++++.
T Consensus 219 g~~~~~~ 225 (275)
T PRK13639 219 GTPKEVF 225 (275)
T ss_pred CCHHHHh
Confidence 9998874
|
|
| >PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-34 Score=291.52 Aligned_cols=200 Identities=23% Similarity=0.378 Sum_probs=167.9
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
+|+++||+++|+ ++.+|+|+||++++||+++|+||||||||||+++|+|+++|+. |+|.++|
T Consensus 7 ~l~i~~l~~~~~---------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~---G~i~~~g 68 (265)
T PRK10253 7 RLRGEQLTLGYG---------------KYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAH---GHVWLDG 68 (265)
T ss_pred EEEEEEEEEEEC---------------CEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCC---cEEEECC
Confidence 799999999993 2459999999999999999999999999999999999998864 9999999
Q ss_pred ccCCC--hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCC--CCCHHHHHHHHHHHHHHcCCccccC----CcCCcc
Q 006897 136 HQIKK--PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLK--GMSHKEKEDRVESLMDELGLTHVAG----SFVGDE 207 (627)
Q Consensus 136 ~~~~~--~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~--~~~~~~~~~~v~~~l~~lgL~~~~~----~~~gGe 207 (627)
+++.. ....++.++|++|++.+++.+|++||+.++...... ....+..+++++++++.+||++..+ .++|||
T Consensus 69 ~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq 148 (265)
T PRK10253 69 EHIQHYASKEVARRIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQ 148 (265)
T ss_pred EEhhhCCHHHHhhheEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCChHH
Confidence 87532 344567899999999988889999999875211100 0112334567899999999976544 456999
Q ss_pred ccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeCC
Q 006897 208 ENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGS 269 (627)
Q Consensus 208 ~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~ 269 (627)
+|| ||+|||+.++..+.+.|++++++.|+|||++||+++ ++.++||++++|++|++++.|+
T Consensus 149 ~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~-~~~~~~d~i~~l~~G~i~~~g~ 227 (265)
T PRK10253 149 RQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLN-QACRYASHLIALREGKIVAQGA 227 (265)
T ss_pred HHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCC
Confidence 998 999999999999999999997655899999999998 5899999999999999999999
Q ss_pred HHHHH
Q 006897 270 LELLE 274 (627)
Q Consensus 270 ~~~~~ 274 (627)
++++.
T Consensus 228 ~~~~~ 232 (265)
T PRK10253 228 PKEIV 232 (265)
T ss_pred HHHHh
Confidence 87764
|
|
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-34 Score=293.75 Aligned_cols=196 Identities=26% Similarity=0.382 Sum_probs=165.3
Q ss_pred EEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCcc
Q 006897 58 TVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQ 137 (627)
Q Consensus 58 ~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~ 137 (627)
.++|+++.| +.+.+|+|+||++++||+++|+||||||||||+|+|+|+++|++ |+|.++|++
T Consensus 26 ~~~~~~~~~---------------~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~---G~i~i~g~~ 87 (269)
T cd03294 26 SKEEILKKT---------------GQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTS---GKVLIDGQD 87 (269)
T ss_pred hhhhhhhhc---------------CCceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCC---eEEEECCEE
Confidence 466777777 24569999999999999999999999999999999999999864 999999988
Q ss_pred CCC--hhh---h-cccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccC----CcCCcc
Q 006897 138 IKK--PAQ---L-RKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAG----SFVGDE 207 (627)
Q Consensus 138 ~~~--~~~---~-r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~----~~~gGe 207 (627)
+.. ... . ++.++|++|++.+++.+||+||+.+..... +....+..++++++++.+||.+..+ .++|||
T Consensus 88 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq 165 (269)
T cd03294 88 IAAMSRKELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQ--GVPRAEREERAAEALELVGLEGWEHKYPDELSGGM 165 (269)
T ss_pred ccccChhhhhhhhcCcEEEEecCcccCCCCcHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCHhHhhCCcccCCHHH
Confidence 632 111 2 357999999999998899999999875432 2234455677899999999976554 456999
Q ss_pred ccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeCC
Q 006897 208 ENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGS 269 (627)
Q Consensus 208 ~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~ 269 (627)
+|| ||+|||+.++..+.+.|++++++.|+|||++||+++ ++.++||++++|++|++++.|+
T Consensus 166 ~qrv~lAral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~-~~~~~~d~v~~l~~G~i~~~g~ 244 (269)
T cd03294 166 QQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLD-EALRLGDRIAIMKDGRLVQVGT 244 (269)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEECCEEEEeCC
Confidence 998 999999999999999999997656899999999998 5889999999999999999999
Q ss_pred HHHHH
Q 006897 270 LELLE 274 (627)
Q Consensus 270 ~~~~~ 274 (627)
++++.
T Consensus 245 ~~~~~ 249 (269)
T cd03294 245 PEEIL 249 (269)
T ss_pred HHHHH
Confidence 87764
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-33 Score=289.86 Aligned_cols=208 Identities=20% Similarity=0.349 Sum_probs=168.5
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
+|+++||+++|+.... ....+++.+|+|+||++++||+++|+||||||||||+++|+|+++|++ |+|.++|
T Consensus 2 ~l~~~~l~~~~~~~~~------~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~---G~i~~~g 72 (265)
T TIGR02769 2 LLEVRDVTHTYRTGGL------FGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQ---GTVSFRG 72 (265)
T ss_pred eEEEEeEEEEeccCcc------ccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---cEEEECC
Confidence 6899999999942100 000013569999999999999999999999999999999999999864 9999999
Q ss_pred ccCCC--hh---hhcccEEEEccCC--CCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCc-ccc----CCc
Q 006897 136 HQIKK--PA---QLRKICGFVAQED--NLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLT-HVA----GSF 203 (627)
Q Consensus 136 ~~~~~--~~---~~r~~ig~v~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~----~~~ 203 (627)
+++.. .. .+++.++|++|++ .+++.+||+||+.+..... .....++.++++.++++.+||+ +.. ..+
T Consensus 73 ~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~-~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~L 151 (265)
T TIGR02769 73 QDLYQLDRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHL-TSLDESEQKARIAELLDMVGLRSEDADKLPRQL 151 (265)
T ss_pred EEccccCHHHHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHcCCChhhhhCChhhC
Confidence 88632 11 2467899999996 4667889999998764321 1223345567789999999995 444 346
Q ss_pred CCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEE
Q 006897 204 VGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVV 265 (627)
Q Consensus 204 ~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv 265 (627)
+|||+|| ||+|||+.++..+.+.|++++++.|+|||++|||++ .+.++||++++|++|+++
T Consensus 152 SgGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~-~~~~~~d~i~~l~~G~i~ 230 (265)
T TIGR02769 152 SGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLR-LVQSFCQRVAVMDKGQIV 230 (265)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHHhcEEEEEeCCEEE
Confidence 6999998 999999999999999999998756899999999998 478899999999999999
Q ss_pred eeCCHHHHH
Q 006897 266 HYGSLELLE 274 (627)
Q Consensus 266 ~~G~~~~~~ 274 (627)
+.|+++++.
T Consensus 231 ~~g~~~~~~ 239 (265)
T TIGR02769 231 EECDVAQLL 239 (265)
T ss_pred EECCHHHHc
Confidence 999988764
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=291.96 Aligned_cols=204 Identities=20% Similarity=0.354 Sum_probs=169.5
Q ss_pred ceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEEC
Q 006897 55 CKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVN 134 (627)
Q Consensus 55 ~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~ 134 (627)
.+|+++||+++|+... +...+.+|+|+||+|++||+++|+||||||||||+++|+|+++|+. |+|.++
T Consensus 3 ~~l~~~~l~~~~~~~~---------~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~---G~i~i~ 70 (280)
T PRK13633 3 EMIKCKNVSYKYESNE---------ESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSE---GKVYVD 70 (280)
T ss_pred ceEEEeeeEEEcCCCC---------CCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---ceEEEC
Confidence 3799999999995321 0113469999999999999999999999999999999999999864 999999
Q ss_pred CccCCC---hhhhcccEEEEccCCC--CCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccC----CcCC
Q 006897 135 CHQIKK---PAQLRKICGFVAQEDN--LLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAG----SFVG 205 (627)
Q Consensus 135 g~~~~~---~~~~r~~ig~v~Q~~~--l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~----~~~g 205 (627)
|+++.. ....++.+||+||++. ++ ..||.||+.|+.... +.++++.+++++++++.+||++..+ +++|
T Consensus 71 g~~i~~~~~~~~~~~~i~~v~q~~~~~~~-~~~v~~~l~~~~~~~--~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~ 147 (280)
T PRK13633 71 GLDTSDEENLWDIRNKAGMVFQNPDNQIV-ATIVEEDVAFGPENL--GIPPEEIRERVDESLKKVGMYEYRRHAPHLLSG 147 (280)
T ss_pred CEeccccccHHHHhhheEEEecChhhhhc-cccHHHHHHhhHhhc--CCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCH
Confidence 988643 2346788999999974 44 469999999875322 3345566778999999999976554 4569
Q ss_pred ccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEee
Q 006897 206 DEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHY 267 (627)
Q Consensus 206 Ge~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~ 267 (627)
||+|| ||+|||+.++..+.+.|++++++.|+|||++||+++. +.. ||++++|++|++++.
T Consensus 148 G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~-~~~-~d~v~~l~~G~i~~~ 225 (280)
T PRK13633 148 GQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEE-AVE-ADRIIVMDSGKVVME 225 (280)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHH-Hhc-CCEEEEEECCEEEEe
Confidence 99998 9999999999999999999976568999999999984 654 999999999999999
Q ss_pred CCHHHHHH
Q 006897 268 GSLELLEE 275 (627)
Q Consensus 268 G~~~~~~~ 275 (627)
|+++++..
T Consensus 226 g~~~~~~~ 233 (280)
T PRK13633 226 GTPKEIFK 233 (280)
T ss_pred cCHHHHhc
Confidence 99988753
|
|
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-34 Score=281.74 Aligned_cols=188 Identities=27% Similarity=0.483 Sum_probs=160.3
Q ss_pred EEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCc
Q 006897 57 VTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCH 136 (627)
Q Consensus 57 l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~ 136 (627)
|+++|++++|+ ++.+|+|+||++++| +++|+||||||||||+++|+|+++|++ |+|.++|+
T Consensus 1 i~~~~~~~~~~---------------~~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~---G~i~~~g~ 61 (211)
T cd03264 1 LQLENLTKRYG---------------KKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSS---GTIRIDGQ 61 (211)
T ss_pred CEEEEEEEEEC---------------CEEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCc---cEEEECCC
Confidence 47899999993 235999999999999 999999999999999999999999864 99999998
Q ss_pred cCCC-hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccC----CcCCccccC-
Q 006897 137 QIKK-PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAG----SFVGDEENR- 210 (627)
Q Consensus 137 ~~~~-~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~----~~~gGe~qr- 210 (627)
++.. ....++.++|++|++.+++.+||.||+.+....+ +.++++.+++++++++.+||++..+ .++|||+||
T Consensus 62 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv 139 (211)
T cd03264 62 DVLKQPQKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLK--GIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRV 139 (211)
T ss_pred ccccchHHHHhheEEecCCCcccccCCHHHHHHHHHHHh--CCCHHHHHHHHHHHHHHCCCHHHHhCchhhCCHHHHHHH
Confidence 7632 2345778999999999999899999999865432 2233445677899999999976544 466999998
Q ss_pred -----------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeC
Q 006897 211 -----------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYG 268 (627)
Q Consensus 211 -----------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G 268 (627)
||+|||+.++..+.+.|+++++ ++|||++|||++ ++.++|||+++|++|++++.|
T Consensus 140 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tii~vsH~~~-~~~~~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 140 GIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGE--DRIVILSTHIVE-DVESLCNQVAVLNKGKLVFEG 211 (211)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC--CCEEEEEcCCHH-HHHHhCCEEEEEECCEEEecC
Confidence 9999999999999999999974 489999999998 478899999999999998765
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-34 Score=292.15 Aligned_cols=197 Identities=24% Similarity=0.376 Sum_probs=166.4
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
+|+++||+++|+. .+.+|+|+||+|++||+++|+||||||||||+|+|+|+++|+. |+|.++|
T Consensus 1 ml~~~~l~~~~~~--------------~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~---G~i~~~g 63 (274)
T PRK13644 1 MIRLENVSYSYPD--------------GTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQK---GKVLVSG 63 (274)
T ss_pred CEEEEEEEEEcCC--------------CCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCC---ceEEECC
Confidence 4789999999931 2359999999999999999999999999999999999999864 9999999
Q ss_pred ccCCC---hhhhcccEEEEccCCC-CCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccC----CcCCcc
Q 006897 136 HQIKK---PAQLRKICGFVAQEDN-LLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAG----SFVGDE 207 (627)
Q Consensus 136 ~~~~~---~~~~r~~ig~v~Q~~~-l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~----~~~gGe 207 (627)
.++.. ...+++.+||++|++. .+...|+.||+.+..... +.+.++..++++++++.+||++..+ .++|||
T Consensus 64 ~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~ 141 (274)
T PRK13644 64 IDTGDFSKLQGIRKLVGIVFQNPETQFVGRTVEEDLAFGPENL--CLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQ 141 (274)
T ss_pred EECCccccHHHHHhheEEEEEChhhhcccchHHHHHHhhHHHc--CCCHHHHHHHHHHHHHHCCCHHHhcCCcccCCHHH
Confidence 88632 2356778999999975 355679999999865322 2345566678999999999976554 456999
Q ss_pred ccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeCC
Q 006897 208 ENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGS 269 (627)
Q Consensus 208 ~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~ 269 (627)
+|| ||+|||+.++..+.+.|+++++ .|+|||++|||++ ++ +.||++++|++|++++.|+
T Consensus 142 ~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~-~g~til~~tH~~~-~~-~~~d~v~~l~~G~i~~~g~ 218 (274)
T PRK13644 142 GQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHE-KGKTIVYITHNLE-EL-HDADRIIVMDRGKIVLEGE 218 (274)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCCEEEEEecCHH-HH-hhCCEEEEEECCEEEEECC
Confidence 998 9999999999999999999975 5899999999998 46 5699999999999999999
Q ss_pred HHHHH
Q 006897 270 LELLE 274 (627)
Q Consensus 270 ~~~~~ 274 (627)
++++.
T Consensus 219 ~~~~~ 223 (274)
T PRK13644 219 PENVL 223 (274)
T ss_pred HHHHh
Confidence 88764
|
|
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-33 Score=291.64 Aligned_cols=200 Identities=23% Similarity=0.412 Sum_probs=168.1
Q ss_pred ceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEEC
Q 006897 55 CKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVN 134 (627)
Q Consensus 55 ~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~ 134 (627)
.+|+++|++++|+. +++.+|+|+||++++||+++|+||||||||||+++|+|+.+|++ |+|.++
T Consensus 6 ~~l~~~nl~~~~~~-------------~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~---G~I~~~ 69 (271)
T PRK13632 6 VMIKVENVSFSYPN-------------SENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQS---GEIKID 69 (271)
T ss_pred eEEEEEeEEEEcCC-------------CCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCC---ceEEEC
Confidence 47999999999942 12469999999999999999999999999999999999999864 999999
Q ss_pred CccCCC--hhhhcccEEEEccCCC-CCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccC----CcCCcc
Q 006897 135 CHQIKK--PAQLRKICGFVAQEDN-LLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAG----SFVGDE 207 (627)
Q Consensus 135 g~~~~~--~~~~r~~ig~v~Q~~~-l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~----~~~gGe 207 (627)
|+++.. ...+++.+||++|++. .++.+||+||+.++.... +...++.+++++++++.+||++..+ .++|||
T Consensus 70 g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~ 147 (271)
T PRK13632 70 GITISKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENK--KVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQ 147 (271)
T ss_pred CEecCcCCHHHHhcceEEEEeCHHHhcCcccHHHHHHhHHHHc--CCCHHHHHHHHHHHHHHcCCHHHhhCCcccCCHHH
Confidence 988632 2456788999999974 566789999999865322 2344555677899999999976554 456999
Q ss_pred ccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeCC
Q 006897 208 ENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGS 269 (627)
Q Consensus 208 ~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~ 269 (627)
+|| ||+|||+.++..++++|++++++.++|||++||+++. + ..||++++|++|+++..|+
T Consensus 148 ~qrl~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~-~-~~~d~v~~l~~G~i~~~g~ 225 (271)
T PRK13632 148 KQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDE-A-ILADKVIVFSEGKLIAQGK 225 (271)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhH-H-hhCCEEEEEECCEEEEecC
Confidence 998 9999999999999999999976545899999999984 5 4799999999999999999
Q ss_pred HHHHH
Q 006897 270 LELLE 274 (627)
Q Consensus 270 ~~~~~ 274 (627)
++++.
T Consensus 226 ~~~~~ 230 (271)
T PRK13632 226 PKEIL 230 (271)
T ss_pred HHHHh
Confidence 87764
|
|
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-33 Score=284.98 Aligned_cols=196 Identities=21% Similarity=0.388 Sum_probs=164.3
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
+|+++||+++|.. + ..|+||++++||+++|+||||||||||+++|+|+++|++ |+|.++|
T Consensus 1 ~l~~~~l~~~~~~---------------~--~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~---G~i~~~g 60 (232)
T PRK10771 1 MLKLTDITWLYHH---------------L--PMRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPAS---GSLTLNG 60 (232)
T ss_pred CeEEEEEEEEECC---------------c--cceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---ceEEECC
Confidence 4789999999941 1 238999999999999999999999999999999998864 9999999
Q ss_pred ccCCChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccC----CcCCccccC-
Q 006897 136 HQIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAG----SFVGDEENR- 210 (627)
Q Consensus 136 ~~~~~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~----~~~gGe~qr- 210 (627)
+++......++.++|++|++.+++.+|+.||+.++..... . ..+..++++.++++.+||++..+ .++|||+||
T Consensus 61 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~-~-~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv 138 (232)
T PRK10771 61 QDHTTTPPSRRPVSMLFQENNLFSHLTVAQNIGLGLNPGL-K-LNAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRV 138 (232)
T ss_pred eecCcCChhhccEEEEecccccccCCcHHHHHhccccccc-C-CCHHHHHHHHHHHHHcCcHHHHhCCcccCCHHHHHHH
Confidence 8864322235679999999999998999999987532111 1 12344667999999999976555 456999998
Q ss_pred -----------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeCCHHHH
Q 006897 211 -----------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGSLELL 273 (627)
Q Consensus 211 -----------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~ 273 (627)
||+|||+.++..+.+.|++++++.|+|||++||+++ ++.++||++++|++|++++.|+++++
T Consensus 139 ~laral~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~g~i~~~g~~~~~ 217 (232)
T PRK10771 139 ALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLE-DAARIAPRSLVVADGRIAWDGPTDEL 217 (232)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999997656899999999998 58889999999999999999998776
Q ss_pred H
Q 006897 274 E 274 (627)
Q Consensus 274 ~ 274 (627)
.
T Consensus 218 ~ 218 (232)
T PRK10771 218 L 218 (232)
T ss_pred H
Confidence 4
|
|
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-34 Score=282.04 Aligned_cols=189 Identities=23% Similarity=0.401 Sum_probs=157.9
Q ss_pred EEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCc
Q 006897 57 VTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCH 136 (627)
Q Consensus 57 l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~ 136 (627)
|+++|++++|+ ++. .|+||++++||+++|+||||||||||+++|+|+++|++ |+|.++|+
T Consensus 1 i~~~~l~~~~~---------------~~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~---G~i~~~g~ 60 (211)
T cd03298 1 VRLDKIRFSYG---------------EQP--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQS---GRVLINGV 60 (211)
T ss_pred CEEEeEEEEeC---------------CEe--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---ceEEECCE
Confidence 47899999993 122 39999999999999999999999999999999998864 99999998
Q ss_pred cCCChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccC----CcCCccccC--
Q 006897 137 QIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAG----SFVGDEENR-- 210 (627)
Q Consensus 137 ~~~~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~----~~~gGe~qr-- 210 (627)
++......++.++|++|++.+++.+|++||+.++..... . ..++.++++.++++.+||++..+ .++|||+||
T Consensus 61 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~-~-~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ 138 (211)
T cd03298 61 DVTAAPPADRPVSMLFQENNLFAHLTVEQNVGLGLSPGL-K-LTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVA 138 (211)
T ss_pred EcCcCCHhHccEEEEecccccCCCCcHHHHHhccccccc-C-ccHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHH
Confidence 864322345789999999999999999999987642111 1 12344567899999999976554 456999998
Q ss_pred ----------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeC
Q 006897 211 ----------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYG 268 (627)
Q Consensus 211 ----------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G 268 (627)
||+|||+.++..+.+.|++++++.|+|||++||+++ ++.++||++++|++|++++.|
T Consensus 139 ia~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 139 LARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPE-DAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHhhhCEEEEEECCEEeecC
Confidence 999999999999999999997666899999999998 488899999999999998754
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-33 Score=287.58 Aligned_cols=200 Identities=25% Similarity=0.406 Sum_probs=166.2
Q ss_pred ceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC--CCCCccceEE
Q 006897 55 CKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVR--DQDFDPRSIT 132 (627)
Q Consensus 55 ~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~--~~~~~~G~i~ 132 (627)
.+|+++|++++|+ ++.+|+|+||+|++||+++|+||||||||||+++|+|+++ |...+.|+|.
T Consensus 12 ~~l~~~~l~~~~~---------------~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~ 76 (260)
T PRK10744 12 SKIQVRNLNFYYG---------------KFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEIL 76 (260)
T ss_pred ceEEEEEEEEEeC---------------CeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEE
Confidence 4799999999993 2359999999999999999999999999999999999986 2212349999
Q ss_pred ECCccCCC----hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCc--------ccc
Q 006897 133 VNCHQIKK----PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLT--------HVA 200 (627)
Q Consensus 133 i~g~~~~~----~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~--------~~~ 200 (627)
++|+++.. ...+++.++|++|++.+++ .|++||+.+..... .+.+.++.+++++++++.+++. ...
T Consensus 77 ~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~ 154 (260)
T PRK10744 77 LDGENILTPKQDIALLRAKVGMVFQKPTPFP-MSIYDNIAFGVRLF-EKLSRAEMDERVEWALTKAALWNEVKDKLHQSG 154 (260)
T ss_pred ECCEEccccccchHHHhcceEEEecCCccCc-CcHHHHHhhhHhhc-CCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCC
Confidence 99988632 2346778999999998887 79999999875322 1234455567889999999973 223
Q ss_pred CCcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCC
Q 006897 201 GSFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRG 262 (627)
Q Consensus 201 ~~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G 262 (627)
.+++|||+|| ||+|||+.++..+.+.|++++ + ++|||++||+++ ++.++||++++|++|
T Consensus 155 ~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~-~-~~tiii~sH~~~-~~~~~~d~i~~l~~G 231 (260)
T PRK10744 155 YSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELK-Q-DYTVVIVTHNMQ-QAARCSDYTAFMYLG 231 (260)
T ss_pred CCCCHHHHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-c-CCeEEEEeCCHH-HHHHhCCEEEEEECC
Confidence 4577999998 999999999999999999995 3 689999999998 478899999999999
Q ss_pred eEEeeCCHHHHH
Q 006897 263 SVVHYGSLELLE 274 (627)
Q Consensus 263 ~iv~~G~~~~~~ 274 (627)
++++.|+++++.
T Consensus 232 ~i~~~g~~~~~~ 243 (260)
T PRK10744 232 ELIEFGNTDTIF 243 (260)
T ss_pred EEEEeCCHHHHH
Confidence 999999988764
|
|
| >PRK11144 modC molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-34 Score=301.75 Aligned_cols=190 Identities=24% Similarity=0.410 Sum_probs=163.7
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
||++ ||+++|+ ++ .+ |+||++++||+++|+||||||||||||+|+|+++|++ |+|.++|
T Consensus 1 ~l~~-~l~k~~~---------------~~-~~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~---G~I~~~g 59 (352)
T PRK11144 1 MLEL-NFKQQLG---------------DL-CL-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQK---GRIVLNG 59 (352)
T ss_pred CeEE-EEEEEeC---------------CE-EE-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCc---eEEEECC
Confidence 4778 9999993 22 23 8999999999999999999999999999999999864 9999999
Q ss_pred ccCCC------hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccCC----cCC
Q 006897 136 HQIKK------PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAGS----FVG 205 (627)
Q Consensus 136 ~~~~~------~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~----~~g 205 (627)
+++.+ ....++.+||++|+..+++.+||+||+.++.. ...+++++++++.+||++..++ ++|
T Consensus 60 ~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~--------~~~~~~~~~~l~~~gl~~~~~~~~~~LSg 131 (352)
T PRK11144 60 RVLFDAEKGICLPPEKRRIGYVFQDARLFPHYKVRGNLRYGMA--------KSMVAQFDKIVALLGIEPLLDRYPGSLSG 131 (352)
T ss_pred EEccccccccccchhhCCEEEEcCCcccCCCCcHHHHHHhhhh--------hhhHHHHHHHHHHcCCchhhhCCcccCCH
Confidence 88632 12346789999999999999999999998642 1234678999999999876554 569
Q ss_pred ccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEee
Q 006897 206 DEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHY 267 (627)
Q Consensus 206 Ge~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~ 267 (627)
||+|| ||+|||+.++..+.+.|++++++.|+|+|++|||++ ++.++||++++|++|+++..
T Consensus 132 Gq~qRvalaraL~~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~-~~~~~~d~i~~l~~G~i~~~ 210 (352)
T PRK11144 132 GEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLD-EILRLADRVVVLEQGKVKAF 210 (352)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHH-HHHHhCCEEEEEeCCEEEEe
Confidence 99999 999999999999999999998766899999999998 58899999999999999999
Q ss_pred CCHHHHHH
Q 006897 268 GSLELLEE 275 (627)
Q Consensus 268 G~~~~~~~ 275 (627)
|+++++..
T Consensus 211 g~~~~i~~ 218 (352)
T PRK11144 211 GPLEEVWA 218 (352)
T ss_pred cCHHHHHh
Confidence 99988753
|
|
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=291.06 Aligned_cols=197 Identities=20% Similarity=0.311 Sum_probs=165.4
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
||+++||+++|+ ++.+|+|+||++++||+++|+||||||||||+|+|+|+++|++ |+|.++|
T Consensus 1 ml~~~~l~~~~~---------------~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~---G~i~~~g 62 (271)
T PRK13638 1 MLATSDLWFRYQ---------------DEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQK---GAVLWQG 62 (271)
T ss_pred CeEEEEEEEEcC---------------CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCc---cEEEECC
Confidence 488999999993 2459999999999999999999999999999999999999864 9999999
Q ss_pred ccCCC----hhhhcccEEEEccCCCC-CCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccC----CcCCc
Q 006897 136 HQIKK----PAQLRKICGFVAQEDNL-LPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAG----SFVGD 206 (627)
Q Consensus 136 ~~~~~----~~~~r~~ig~v~Q~~~l-~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~----~~~gG 206 (627)
+++.. ....++.+||++|++.+ +...|+.||+.+..... +...++..++++++++.+||.+..+ .++||
T Consensus 63 ~~i~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG 140 (271)
T PRK13638 63 KPLDYSKRGLLALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNL--GVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHG 140 (271)
T ss_pred EEcccccCCHHHHHhheEEEeeChhhccccccHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHcCCHhHhcCCchhCCHH
Confidence 88631 13456789999999752 33458999998864322 2344455677889999999976554 45699
Q ss_pred cccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeC
Q 006897 207 EENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYG 268 (627)
Q Consensus 207 e~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G 268 (627)
|+|| ||+|||+.++..+.+.|+++++ .|+|||++|||++ ++.++||++++|++|++++.|
T Consensus 141 ~~qrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~g~tii~vtH~~~-~~~~~~d~i~~l~~G~i~~~g 218 (271)
T PRK13638 141 QKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVA-QGNHVIISSHDID-LIYEISDAVYVLRQGQILTHG 218 (271)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeC
Confidence 9998 9999999999999999999975 4899999999998 488899999999999999999
Q ss_pred CHHHHH
Q 006897 269 SLELLE 274 (627)
Q Consensus 269 ~~~~~~ 274 (627)
+++++.
T Consensus 219 ~~~~~~ 224 (271)
T PRK13638 219 APGEVF 224 (271)
T ss_pred CHHHHh
Confidence 988764
|
|
| >cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-33 Score=283.56 Aligned_cols=197 Identities=24% Similarity=0.379 Sum_probs=168.0
Q ss_pred EEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCc
Q 006897 57 VTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCH 136 (627)
Q Consensus 57 l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~ 136 (627)
|+++|++++|+ .+.+++|+||++++||+++|+||||||||||+++|+|+++|.. |+|.++|+
T Consensus 1 l~~~~l~~~~~---------------~~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~---G~i~~~g~ 62 (232)
T cd03300 1 IELENVSKFYG---------------GFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTS---GEILLDGK 62 (232)
T ss_pred CEEEeEEEEeC---------------CeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCc---eEEEECCE
Confidence 46899999993 2469999999999999999999999999999999999999864 99999998
Q ss_pred cCCChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccCC----cCCccccC--
Q 006897 137 QIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAGS----FVGDEENR-- 210 (627)
Q Consensus 137 ~~~~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~----~~gGe~qr-- 210 (627)
++......++.++|++|++.+++.+|++||+.+....+ +......+++++++++.+||++..++ ++|||+||
T Consensus 63 ~~~~~~~~~~~i~~~~q~~~~~~~~t~~~nl~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~ 140 (232)
T cd03300 63 DITNLPPHKRPVNTVFQNYALFPHLTVFENIAFGLRLK--KLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVA 140 (232)
T ss_pred EcCcCChhhcceEEEecccccCCCCcHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHH
Confidence 86432234678999999999998899999998865432 22344556778999999999865554 55999988
Q ss_pred ----------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeCCHHHHH
Q 006897 211 ----------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGSLELLE 274 (627)
Q Consensus 211 ----------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~ 274 (627)
||+|||+.++..+.+.|++++++.|+|||++||+++ ++.++||++++|++|++++.|+.+++.
T Consensus 141 laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~-~~~~~~d~i~~l~~G~~~~~~~~~~~~ 219 (232)
T cd03300 141 IARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQE-EALTMSDRIAVMNKGKIQQIGTPEEIY 219 (232)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCEEEEEECCEEEecCCHHHHH
Confidence 999999999999999999997655899999999998 488999999999999999999877653
|
PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=305.78 Aligned_cols=208 Identities=23% Similarity=0.390 Sum_probs=180.0
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC-CCccceEEEC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQ-DFDPRSITVN 134 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~-~~~~G~i~i~ 134 (627)
.|+++||++.|... ++...+++||||++++||++||+|+|||||||+.++|.|++++. ...+|+|.++
T Consensus 5 lL~V~nL~v~~~~~-----------~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~ 73 (539)
T COG1123 5 LLEVENLTVEFATD-----------GGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILD 73 (539)
T ss_pred eEEEeceEEEEecC-----------CcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEEC
Confidence 79999999999533 23357999999999999999999999999999999999999876 3346999999
Q ss_pred CccCCC--h---hhhc-ccEEEEccCC--CCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCcc------cc
Q 006897 135 CHQIKK--P---AQLR-KICGFVAQED--NLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTH------VA 200 (627)
Q Consensus 135 g~~~~~--~---~~~r-~~ig~v~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~------~~ 200 (627)
|+++.. . ..+| +.|+||||++ .+.|-+||.+.+.-....+.. .++++.++++.++|+.+||.+ ..
T Consensus 74 g~dl~~l~~~~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~-~~~~ea~~~a~elL~~Vgl~~~~~~~~yP 152 (539)
T COG1123 74 GRDLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGK-GSRAEARKRAVELLEQVGLPDPERRDRYP 152 (539)
T ss_pred CcchhcCCHHHHHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHcCCCChhhhccCC
Confidence 997632 1 2233 6799999995 577889999999987766542 347889999999999999964 34
Q ss_pred CCcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCC
Q 006897 201 GSFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRG 262 (627)
Q Consensus 201 ~~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G 262 (627)
++++|||||| ||++||+..+.+|+++|+++.++.|+++|+||||+.. +.++||||+||++|
T Consensus 153 heLSGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~V-va~~aDrv~Vm~~G 231 (539)
T COG1123 153 HQLSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGV-VAELADRVVVMYKG 231 (539)
T ss_pred cccCchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHH-HHHhcCeEEEEECC
Confidence 5677999999 9999999999999999999999999999999999995 89999999999999
Q ss_pred eEEeeCCHHHHHHH
Q 006897 263 SVVHYGSLELLEET 276 (627)
Q Consensus 263 ~iv~~G~~~~~~~~ 276 (627)
++++.|+++++.+.
T Consensus 232 ~iVE~G~~~~i~~~ 245 (539)
T COG1123 232 EIVETGPTEEILSN 245 (539)
T ss_pred EEEEecCHHHHHhc
Confidence 99999999998654
|
|
| >COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=264.10 Aligned_cols=200 Identities=28% Similarity=0.480 Sum_probs=175.0
Q ss_pred ceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEEC
Q 006897 55 CKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVN 134 (627)
Q Consensus 55 ~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~ 134 (627)
+++.+++++.+|+.+ ...+|+|+|++|.+||.++++||||||||||||+++|+.+|.. |+|.+|
T Consensus 2 ~~l~~~~~sl~y~g~-------------~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~---G~i~l~ 65 (259)
T COG4525 2 CMLNVSHLSLSYEGK-------------PRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSR---GSIQLN 65 (259)
T ss_pred ceeehhheEEecCCc-------------chhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCccc---ceEEEC
Confidence 367899999999532 2569999999999999999999999999999999999999975 999999
Q ss_pred CccCCChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccCCc----CCccccC
Q 006897 135 CHQIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAGSF----VGDEENR 210 (627)
Q Consensus 135 g~~~~~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~----~gGe~qr 210 (627)
|+++..+. ..-|.|||++.++|.+|+.||++|+.++ .++++.++.+++.+.+..+||++..+++ +||+|||
T Consensus 66 ~r~i~gPg---aergvVFQ~~~LlPWl~~~dNvafgL~l--~Gi~k~~R~~~a~q~l~~VgL~~~~~~~i~qLSGGmrQR 140 (259)
T COG4525 66 GRRIEGPG---AERGVVFQNEALLPWLNVIDNVAFGLQL--RGIEKAQRREIAHQMLALVGLEGAEHKYIWQLSGGMRQR 140 (259)
T ss_pred CEeccCCC---ccceeEeccCccchhhHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHhCcccccccceEeecchHHHH
Confidence 99875432 2249999999999999999999999765 4778899999999999999998877655 4999999
Q ss_pred ------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecC--CeEEeeCCH
Q 006897 211 ------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSR--GSVVHYGSL 270 (627)
Q Consensus 211 ------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~--G~iv~~G~~ 270 (627)
|+++||.-+++.+-++|.++.++.|+.+++|||+.+ |..-+++|+++|+. |+|++.-++
T Consensus 141 vGiARALa~eP~~LlLDEPfgAlDa~tRe~mQelLldlw~~tgk~~lliTH~ie-EAlflatrLvvlsp~pgRvv~~~~~ 219 (259)
T COG4525 141 VGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHDIE-EALFLATRLVVLSPGPGRVVERLPL 219 (259)
T ss_pred HHHHHHhhcCcceEeecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccHH-HHHhhhheeEEecCCCceeeEecCC
Confidence 999999999999999999999999999999999999 57889999999985 799987776
Q ss_pred HHHHHH
Q 006897 271 ELLEET 276 (627)
Q Consensus 271 ~~~~~~ 276 (627)
+--.++
T Consensus 220 df~rR~ 225 (259)
T COG4525 220 DFARRY 225 (259)
T ss_pred CHHHHh
Confidence 633333
|
|
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=282.59 Aligned_cols=190 Identities=27% Similarity=0.382 Sum_probs=160.6
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
+|+++|++++|+. ++.+|+|+||++++||+++|+||||||||||+++|+|+++|++ |+|.++|
T Consensus 1 ~l~~~~l~~~~~~--------------~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g 63 (222)
T PRK10908 1 MIRFEHVSKAYLG--------------GRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSA---GKIWFSG 63 (222)
T ss_pred CEEEEeeEEEecC--------------CCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCc---eEEEECC
Confidence 4789999999931 2359999999999999999999999999999999999998864 9999999
Q ss_pred ccCCC--h---hhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccC----CcCCc
Q 006897 136 HQIKK--P---AQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAG----SFVGD 206 (627)
Q Consensus 136 ~~~~~--~---~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~----~~~gG 206 (627)
+++.. . ..+++.++|++|++.+++.+|++||+.+....+ +.+.++..++++++++.+|+.+..+ .++||
T Consensus 64 ~~i~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G 141 (222)
T PRK10908 64 HDITRLKNREVPFLRRQIGMIFQDHHLLMDRTVYDNVAIPLIIA--GASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGG 141 (222)
T ss_pred EEcccCChhHHHHHHhheEEEecCccccccccHHHHHHhHHHhc--CCCHHHHHHHHHHHHHHcCChhhhhCCchhCCHH
Confidence 87632 1 125678999999998888899999999875432 2344455667889999999976544 45699
Q ss_pred cccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEe
Q 006897 207 EENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVH 266 (627)
Q Consensus 207 e~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~ 266 (627)
|+|| ||+|||+.++..+.+.|+++++ .|.|+|++||+++ ++.++||++++|++|+++.
T Consensus 142 ~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~ 217 (222)
T PRK10908 142 EQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNR-VGVTVLMATHDIG-LISRRSYRMLTLSDGHLHG 217 (222)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCHH-HHHHhCCEEEEEECCEEcc
Confidence 9998 9999999999999999999976 4899999999998 4888999999999999864
|
|
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-33 Score=285.77 Aligned_cols=200 Identities=20% Similarity=0.277 Sum_probs=164.4
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
+++++|+++.|+ ++.+|+|+||++++||+++|+||||||||||+|+|+|+++|...+.|+|.++|
T Consensus 2 ~~~~~~l~~~~~---------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g 66 (246)
T PRK14269 2 IAKTTNLNLFYG---------------KKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEG 66 (246)
T ss_pred ceeeeeeEEEEC---------------CEeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECC
Confidence 588999999993 24599999999999999999999999999999999999853112349999999
Q ss_pred ccCCC--hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCcc----c----cCCcCC
Q 006897 136 HQIKK--PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTH----V----AGSFVG 205 (627)
Q Consensus 136 ~~~~~--~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~----~----~~~~~g 205 (627)
+++.. ....++.++|+||++.+++ .|++||+.++...+......++.++++.++++.+||.+ . ...++|
T Consensus 67 ~~i~~~~~~~~~~~i~~~~q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~ 145 (246)
T PRK14269 67 KDVKNQDVVALRKNVGMVFQQPNVFV-KSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSG 145 (246)
T ss_pred EecccCCHHHHhhhEEEEecCCcccc-ccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCH
Confidence 98643 2356778999999998887 59999999865332110122345567889999999942 2 234679
Q ss_pred ccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEee
Q 006897 206 DEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHY 267 (627)
Q Consensus 206 Ge~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~ 267 (627)
||+|| ||+|||+.++..+.+.|+++. + |+|+|++||+++ ++.++||++++|++|++++.
T Consensus 146 G~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~-~-~~tiii~tH~~~-~~~~~~d~i~~l~~G~i~~~ 222 (246)
T PRK14269 146 GQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELS-H-NLSMIMVTHNMQ-QGKRVADYTAFFHLGELIEF 222 (246)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHh-C-CCEEEEEecCHH-HHHhhCcEEEEEECCEEEEE
Confidence 99998 999999999999999999985 3 789999999998 48889999999999999999
Q ss_pred CCHHHHH
Q 006897 268 GSLELLE 274 (627)
Q Consensus 268 G~~~~~~ 274 (627)
|+++++.
T Consensus 223 g~~~~~~ 229 (246)
T PRK14269 223 GESKEFF 229 (246)
T ss_pred CCHHHHH
Confidence 9987764
|
|
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-33 Score=288.86 Aligned_cols=200 Identities=22% Similarity=0.333 Sum_probs=168.2
Q ss_pred ceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEEC
Q 006897 55 CKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVN 134 (627)
Q Consensus 55 ~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~ 134 (627)
.+|+++|++++|++ ..+.+|+|+||++++||+++|+||||||||||+++|+|+++|++ |+|.++
T Consensus 6 ~~l~i~~l~~~~~~-------------~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~---G~i~~~ 69 (269)
T PRK13648 6 SIIVFKNVSFQYQS-------------DASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKS---GEIFYN 69 (269)
T ss_pred ceEEEEEEEEEcCC-------------CCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCc---eEEEEC
Confidence 37999999999942 12358999999999999999999999999999999999998864 999999
Q ss_pred CccCCC--hhhhcccEEEEccCCC-CCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccC----CcCCcc
Q 006897 135 CHQIKK--PAQLRKICGFVAQEDN-LLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAG----SFVGDE 207 (627)
Q Consensus 135 g~~~~~--~~~~r~~ig~v~Q~~~-l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~----~~~gGe 207 (627)
|+++.. ...+++.++|++|++. +++..|+.+|+.+..... +...++..++++++++.+|+.+..+ .++|||
T Consensus 70 g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~ 147 (269)
T PRK13648 70 NQAITDDNFEKLRKHIGIVFQNPDNQFVGSIVKYDVAFGLENH--AVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQ 147 (269)
T ss_pred CEECCcCCHHHHHhheeEEEeChHHhcccccHHHHHHhhHHhc--CCCHHHHHHHHHHHHHHcCCchhhhCCcccCCHHH
Confidence 988632 2456778999999974 677789999998875322 2344555677899999999976554 456999
Q ss_pred ccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeCC
Q 006897 208 ENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGS 269 (627)
Q Consensus 208 ~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~ 269 (627)
+|| ||+|||+.++..+.+.|++++++.|+|||++||+++ ++. .|||+++|++|++++.|+
T Consensus 148 ~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~-~~~-~~d~i~~l~~G~i~~~g~ 225 (269)
T PRK13648 148 KQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLS-EAM-EADHVIVMNKGTVYKEGT 225 (269)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCch-HHh-cCCEEEEEECCEEEEecC
Confidence 998 999999999999999999997655899999999998 465 499999999999999999
Q ss_pred HHHHH
Q 006897 270 LELLE 274 (627)
Q Consensus 270 ~~~~~ 274 (627)
++++.
T Consensus 226 ~~~~~ 230 (269)
T PRK13648 226 PTEIF 230 (269)
T ss_pred HHHHh
Confidence 88764
|
|
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-34 Score=281.66 Aligned_cols=187 Identities=27% Similarity=0.425 Sum_probs=158.7
Q ss_pred EEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCc
Q 006897 57 VTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCH 136 (627)
Q Consensus 57 l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~ 136 (627)
|+++|++++|+. .+.+|+|+||++++||+++|+||||||||||+++|+|+++|++ |+|.++|+
T Consensus 1 l~~~~l~~~~~~--------------~~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g~ 63 (214)
T cd03292 1 IEFINVTKTYPN--------------GTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTS---GTIRVNGQ 63 (214)
T ss_pred CEEEEEEEEeCC--------------CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCc---eEEEECCE
Confidence 468999999931 1459999999999999999999999999999999999998864 99999998
Q ss_pred cCCC--h---hhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccC----CcCCcc
Q 006897 137 QIKK--P---AQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAG----SFVGDE 207 (627)
Q Consensus 137 ~~~~--~---~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~----~~~gGe 207 (627)
++.. . ...++.++|++|++.+++.+|++||+.+....+ +...++.+++++++++.+||++..+ .++|||
T Consensus 64 ~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~t~~~~l~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~ 141 (214)
T cd03292 64 DVSDLRGRAIPYLRRKIGVVFQDFRLLPDRNVYENVAFALEVT--GVPPREIRKRVPAALELVGLSHKHRALPAELSGGE 141 (214)
T ss_pred EcccCCHHHHHHHHHheEEEecCchhccCCcHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHcCCHHHhhCChhhcCHHH
Confidence 7632 1 235678999999999999899999999875432 2234555678899999999976554 456999
Q ss_pred ccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeE
Q 006897 208 ENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSV 264 (627)
Q Consensus 208 ~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~i 264 (627)
+|| ||+|||+.++..+.+.|+++++ .|+|||++||+++ ++.++||++++|++|++
T Consensus 142 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~-~~~tiiivtH~~~-~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 142 QQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINK-AGTTVVVATHAKE-LVDTTRHRVIALERGKL 214 (214)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH-cCCEEEEEeCCHH-HHHHhCCEEEEEeCCcC
Confidence 998 9999999999999999999975 4899999999998 47889999999999974
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-34 Score=285.20 Aligned_cols=193 Identities=22% Similarity=0.370 Sum_probs=160.5
Q ss_pred EEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCc
Q 006897 57 VTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCH 136 (627)
Q Consensus 57 l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~ 136 (627)
|+++||++.|+ ++++|+|+||++++||+++|+||||||||||+++|+|+++|.+ |+|.++|+
T Consensus 1 l~~~~l~~~~~---------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g~ 62 (230)
T TIGR03410 1 LEVSNLNVYYG---------------QSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKS---GSIRLDGE 62 (230)
T ss_pred CEEEeEEEEeC---------------CeEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---CEEEECCE
Confidence 47899999993 2469999999999999999999999999999999999999864 99999998
Q ss_pred cCCC--hh-hhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcC-Cccc----cCCcCCccc
Q 006897 137 QIKK--PA-QLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELG-LTHV----AGSFVGDEE 208 (627)
Q Consensus 137 ~~~~--~~-~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lg-L~~~----~~~~~gGe~ 208 (627)
++.. .. ..++.++|++|++.+++.+|+.||+.++...+ +.. ..+.++++++.++ +.+. ...++|||+
T Consensus 63 ~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~--~~~---~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~ 137 (230)
T TIGR03410 63 DITKLPPHERARAGIAYVPQGREIFPRLTVEENLLTGLAAL--PRR---SRKIPDEIYELFPVLKEMLGRRGGDLSGGQQ 137 (230)
T ss_pred ECCCCCHHHHHHhCeEEeccCCcccCCCcHHHHHHHHHHhc--Ccc---hHHHHHHHHHHHHhHHHHhhCChhhCCHHHH
Confidence 8632 12 23567999999999999999999999875432 111 1234566677665 4443 345679999
Q ss_pred cC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeCCH
Q 006897 209 NR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGSL 270 (627)
Q Consensus 209 qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~ 270 (627)
|| ||+|||+.++..+.+.|++++++.|+|||++||+++ ++.++||++++|++|++++.|+.
T Consensus 138 qrv~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l~~g~i~~~~~~ 216 (230)
T TIGR03410 138 QQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLD-FARELADRYYVMERGRVVASGAG 216 (230)
T ss_pred HHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHH-HHHHhCCEEEEEECCEEEEECCH
Confidence 98 999999999999999999997655899999999998 58889999999999999999998
Q ss_pred HHH
Q 006897 271 ELL 273 (627)
Q Consensus 271 ~~~ 273 (627)
+++
T Consensus 217 ~~~ 219 (230)
T TIGR03410 217 DEL 219 (230)
T ss_pred HHc
Confidence 876
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-33 Score=284.31 Aligned_cols=197 Identities=24% Similarity=0.424 Sum_probs=167.7
Q ss_pred EEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCc
Q 006897 57 VTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCH 136 (627)
Q Consensus 57 l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~ 136 (627)
|+++|++++|+ ++.+|+|+||++++||+++|+||||||||||+++|+|+++|.. |+|.++|.
T Consensus 1 i~i~~l~~~~~---------------~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~---G~i~i~g~ 62 (237)
T TIGR00968 1 IEIANISKRFG---------------SFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDS---GRIRLNGQ 62 (237)
T ss_pred CEEEEEEEEEC---------------CeeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCc---eEEEECCE
Confidence 47899999993 2359999999999999999999999999999999999998864 99999998
Q ss_pred cCCChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccC----CcCCccccC--
Q 006897 137 QIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAG----SFVGDEENR-- 210 (627)
Q Consensus 137 ~~~~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~----~~~gGe~qr-- 210 (627)
++......++.++|++|++.+++.+|+.||+.+....+ +.......++++++++.+++.+..+ .++|||+||
T Consensus 63 ~~~~~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~ 140 (237)
T TIGR00968 63 DATRVHARDRKIGFVFQHYALFKHLTVRDNIAFGLEIR--KHPKAKIKARVEELLELVQLEGLGDRYPNQLSGGQRQRVA 140 (237)
T ss_pred EcCcCChhhcCEEEEecChhhccCCcHHHHHHhHHHhc--CCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHH
Confidence 86432334678999999999999899999999865432 2233445577899999999976554 456999988
Q ss_pred ----------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeCCHHHHH
Q 006897 211 ----------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGSLELLE 274 (627)
Q Consensus 211 ----------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~ 274 (627)
|++|||+.++..+.+.|++++++.|+|||++||+++ ++.++||++++|++|++++.|+.+++.
T Consensus 141 laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~-~~~~~~d~i~~l~~g~i~~~~~~~~~~ 219 (237)
T TIGR00968 141 LARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQE-EAMEVADRIVVMSNGKIEQIGSPDEVY 219 (237)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHhhcCEEEEEECCEEEEecCHHHHH
Confidence 999999999999999999987655899999999998 588999999999999999999988764
|
|
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-33 Score=288.22 Aligned_cols=201 Identities=24% Similarity=0.342 Sum_probs=165.7
Q ss_pred ceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCC--CccceEE
Q 006897 55 CKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQD--FDPRSIT 132 (627)
Q Consensus 55 ~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~--~~~G~i~ 132 (627)
..|+++||+++|+ ++.+|+|+||+|++||+++|+||||||||||+++|+|+++|.. .+.|+|.
T Consensus 18 ~~l~~~nl~~~~~---------------~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~ 82 (267)
T PRK14235 18 IKMRARDVSVFYG---------------EKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKIT 82 (267)
T ss_pred ceEEEEeEEEEEC---------------CEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEE
Confidence 4799999999993 2459999999999999999999999999999999999987510 1249999
Q ss_pred ECCccCCC----hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCcc--------cc
Q 006897 133 VNCHQIKK----PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTH--------VA 200 (627)
Q Consensus 133 i~g~~~~~----~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~--------~~ 200 (627)
++|+++.. ...+++.++|++|++.+++. ||.||+.++...+....++.+..+++.++++.+||.+ ..
T Consensus 83 ~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~ 161 (267)
T PRK14235 83 LDGEDIYDPRLDVVELRARVGMVFQKPNPFPK-SIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPG 161 (267)
T ss_pred ECCEECcccccchHHHhhceEEEecCCCCCCC-cHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCc
Confidence 99988632 23457789999999988875 9999999875432111123445677899999999953 23
Q ss_pred CCcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCC
Q 006897 201 GSFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRG 262 (627)
Q Consensus 201 ~~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G 262 (627)
..++|||+|| ||+|||+.++..+.+.|+++++ ++|||++||+++ ++.++||++++|++|
T Consensus 162 ~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~--~~tiiivtH~~~-~~~~~~d~v~~l~~G 238 (267)
T PRK14235 162 TGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQ--NYTIVIVTHSMQ-QAARVSQRTAFFHLG 238 (267)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhc--CCeEEEEEcCHH-HHHhhCCEEEEEECC
Confidence 4567999998 9999999999999999999963 689999999998 488999999999999
Q ss_pred eEEeeCCHHHHH
Q 006897 263 SVVHYGSLELLE 274 (627)
Q Consensus 263 ~iv~~G~~~~~~ 274 (627)
++++.|+++++.
T Consensus 239 ~i~~~g~~~~~~ 250 (267)
T PRK14235 239 NLVEVGDTEKMF 250 (267)
T ss_pred EEEEeCCHHHHH
Confidence 999999987663
|
|
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=280.99 Aligned_cols=187 Identities=28% Similarity=0.492 Sum_probs=158.4
Q ss_pred EEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCc
Q 006897 57 VTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCH 136 (627)
Q Consensus 57 l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~ 136 (627)
|+++||+++|+ ++.+|+|+||++++||+++|+||||||||||+|+|+|+++|++ |+|.++|+
T Consensus 1 l~~~~l~~~~~---------------~~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g~ 62 (213)
T cd03262 1 IEIKNLHKSFG---------------DFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDS---GTIIIDGL 62 (213)
T ss_pred CEEEEEEEEEC---------------CeEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---ceEEECCE
Confidence 47899999993 2459999999999999999999999999999999999998864 99999998
Q ss_pred cCCC----hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccC----CcCCccc
Q 006897 137 QIKK----PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAG----SFVGDEE 208 (627)
Q Consensus 137 ~~~~----~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~----~~~gGe~ 208 (627)
++.. ....++.++|++|++.+++.+|+.||+.++.... .+...++.+++++++++.+|+++..+ .++|||+
T Consensus 63 ~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~ 141 (213)
T cd03262 63 KLTDDKKNINELRQKVGMVFQQFNLFPHLTVLENITLAPIKV-KGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQ 141 (213)
T ss_pred ECCccchhHHHHHhcceEEecccccCCCCcHHHHHHhHHHHh-cCCCHHHHHHHHHHHHHHcCCHhHhhhCccccCHHHH
Confidence 8631 2345778999999999998899999998864211 12234455677899999999976544 4569999
Q ss_pred cC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeE
Q 006897 209 NR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSV 264 (627)
Q Consensus 209 qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~i 264 (627)
|| ||+|||+.++..+.+.|+++++ .|+|||++||+++ ++.++||++++|++|++
T Consensus 142 qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~~tvi~~sh~~~-~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 142 QRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAE-EGMTMVVVTHEMG-FAREVADRVIFMDDGRI 213 (213)
T ss_pred HHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHH-cCCEEEEEeCCHH-HHHHhCCEEEEEeCCcC
Confidence 98 9999999999999999999976 5899999999998 58889999999999974
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=285.66 Aligned_cols=193 Identities=28% Similarity=0.416 Sum_probs=164.1
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
+|+++|++++|+ ++.+|+|+||++++||+++|+||||||||||+++|+|+++|++ |+|.++|
T Consensus 3 ~l~~~~l~~~~~---------------~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~---G~i~~~g 64 (241)
T PRK14250 3 EIEFKEVSYSSF---------------GKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTE---GSILIDG 64 (241)
T ss_pred eEEEEeEEEEeC---------------CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---cEEEECC
Confidence 589999999993 2359999999999999999999999999999999999998864 9999999
Q ss_pred ccCCC--hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCc-ccc----CCcCCccc
Q 006897 136 HQIKK--PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLT-HVA----GSFVGDEE 208 (627)
Q Consensus 136 ~~~~~--~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~----~~~~gGe~ 208 (627)
+++.. ....++.++|++|++.+++ .|++||+.+....+ + ...+++.++++.+||+ +.. ..++|||+
T Consensus 65 ~~i~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~--~----~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~ 137 (241)
T PRK14250 65 VDIKTIDVIDLRRKIGMVFQQPHLFE-GTVKDNIEYGPMLK--G----EKNVDVEYYLSIVGLNKEYATRDVKNLSGGEA 137 (241)
T ss_pred EEhhhcChHHhhhcEEEEecCchhch-hhHHHHHhcchhhc--C----cHHHHHHHHHHHcCCCHHHhhCCcccCCHHHH
Confidence 88632 3456778999999998887 59999998754221 1 1235688899999996 343 35679999
Q ss_pred cC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeCCH
Q 006897 209 NR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGSL 270 (627)
Q Consensus 209 qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~ 270 (627)
|| ||+|||+.++..+.+.|++++++.|+|||++|||++ ++.++||++++|++|++++.|++
T Consensus 138 qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~ 216 (241)
T PRK14250 138 QRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNME-QAKRIGDYTAFLNKGILVEYAKT 216 (241)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHH-HHHHhCCEEEEEeCCEEEEeCCH
Confidence 98 999999999999999999997656899999999998 48889999999999999999998
Q ss_pred HHHH
Q 006897 271 ELLE 274 (627)
Q Consensus 271 ~~~~ 274 (627)
+++.
T Consensus 217 ~~~~ 220 (241)
T PRK14250 217 YDFF 220 (241)
T ss_pred HHHh
Confidence 7763
|
|
| >TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-33 Score=279.64 Aligned_cols=190 Identities=25% Similarity=0.427 Sum_probs=160.5
Q ss_pred EEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCc
Q 006897 57 VTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCH 136 (627)
Q Consensus 57 l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~ 136 (627)
++++||++.|+ .+++|+||++++||+++|+||||||||||+|+|+|+++|++ |+|.++|+
T Consensus 1 ~~~~~l~~~~~-----------------~~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g~ 60 (213)
T TIGR01277 1 LALDKVRYEYE-----------------HLPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPAS---GSIKVNDQ 60 (213)
T ss_pred CeEEeeeEEeC-----------------CcceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCC---cEEEECCE
Confidence 47899999993 14689999999999999999999999999999999999864 99999998
Q ss_pred cCCChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccC----CcCCccccC--
Q 006897 137 QIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAG----SFVGDEENR-- 210 (627)
Q Consensus 137 ~~~~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~----~~~gGe~qr-- 210 (627)
++.+....++.++|++|++.+++.+|+.||+.+...... . .+.+.+++++++++.+||++..+ .++|||+||
T Consensus 61 ~~~~~~~~~~~i~~v~q~~~~~~~~t~~en~~~~~~~~~-~-~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~ 138 (213)
T TIGR01277 61 SHTGLAPYQRPVSMLFQENNLFAHLTVRQNIGLGLHPGL-K-LNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVA 138 (213)
T ss_pred EcccCChhccceEEEeccCccCCCCcHHHHHHhHhhccC-C-ccHHHHHHHHHHHHHcCcHHHhhCCcccCCHHHHHHHH
Confidence 864333456789999999999998999999987642211 1 12234567889999999976554 456999998
Q ss_pred ----------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeCC
Q 006897 211 ----------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGS 269 (627)
Q Consensus 211 ----------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~ 269 (627)
||+|||+.++..+.+.|+++.++.|.|||++||+++ ++.++||++++|++|++++.|+
T Consensus 139 laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~-~~~~~~d~v~~l~~g~i~~~~~ 212 (213)
T TIGR01277 139 LARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLS-DARAIASQIAVVSQGKIKVVSD 212 (213)
T ss_pred HHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHhhcCeEEEEECCeEEEecC
Confidence 999999999999999999997656899999999998 4788999999999999998875
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. |
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-33 Score=281.21 Aligned_cols=191 Identities=27% Similarity=0.436 Sum_probs=158.2
Q ss_pred EEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCc
Q 006897 57 VTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCH 136 (627)
Q Consensus 57 l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~ 136 (627)
|+++||+++|+++ .+.+++|+|+||++++||+++|+||||||||||+++|+|+++|++ |+|.++|+
T Consensus 2 l~~~~v~~~~~~~-----------~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~---G~i~~~g~ 67 (221)
T TIGR02211 2 LKCENLGKRYQEG-----------KLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTS---GEVLFNGQ 67 (221)
T ss_pred EEEEeeeEEccCC-----------CcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCC---cEEEECCE
Confidence 7899999999421 112469999999999999999999999999999999999998864 99999998
Q ss_pred cCCC--hh---hhc-ccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccC----CcCCc
Q 006897 137 QIKK--PA---QLR-KICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAG----SFVGD 206 (627)
Q Consensus 137 ~~~~--~~---~~r-~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~----~~~gG 206 (627)
++.. .. .++ +.++|++|++.+++.+|++||+.+....+ .....+..+++.++++.+||++..+ .++||
T Consensus 68 ~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G 145 (221)
T TIGR02211 68 SLSKLSSNERAKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIG--KKSVKEAKERAYEMLEKVGLEHRINHRPSELSGG 145 (221)
T ss_pred EhhhcCHhHHHHHHHhcEEEEecccccCCCCcHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHH
Confidence 8632 11 123 67999999999998899999999865332 2233445667889999999976544 45699
Q ss_pred cccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEE
Q 006897 207 EENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVV 265 (627)
Q Consensus 207 e~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv 265 (627)
|+|| ||+|||+.++..+.+.|++++++.|+|||++|||++ ++ +.+|++++|++|+++
T Consensus 146 ~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~-~~-~~~d~v~~l~~G~i~ 220 (221)
T TIGR02211 146 ERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLE-LA-KKLDRVLEMKDGQLF 220 (221)
T ss_pred HHHHHHHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HH-hhcCEEEEEeCCEec
Confidence 9998 999999999999999999997656899999999998 35 458999999999975
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >PRK14274 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-33 Score=285.84 Aligned_cols=200 Identities=21% Similarity=0.316 Sum_probs=165.2
Q ss_pred ceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC--CCCCccceEE
Q 006897 55 CKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVR--DQDFDPRSIT 132 (627)
Q Consensus 55 ~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~--~~~~~~G~i~ 132 (627)
.+|+++|+++.|+ .+.+|+|+||+|++||+++|+||||||||||+++|+|+++ |...+.|+|.
T Consensus 11 ~~l~i~~l~~~~~---------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~ 75 (259)
T PRK14274 11 EVYQINGMNLWYG---------------QHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMN 75 (259)
T ss_pred ceEEEeeEEEEEC---------------CeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEE
Confidence 4799999999993 2459999999999999999999999999999999999987 3211249999
Q ss_pred ECCccCCC----hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCcc--------cc
Q 006897 133 VNCHQIKK----PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTH--------VA 200 (627)
Q Consensus 133 i~g~~~~~----~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~--------~~ 200 (627)
++|+++.. ....++.+||++|++.+++. ||+||+.+...... ...+++..++++++++.+|+.+ ..
T Consensus 76 ~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~ 153 (259)
T PRK14274 76 YNGSNILKGKVDLVELRKNIGMVFQKGNPFPQ-SIFDNVAYGPRIHG-TKNKKKLQEIVEKSLKDVALWDEVKDRLHTQA 153 (259)
T ss_pred ECCEEccccccCHHHHhhceEEEecCCccccc-CHHHHHHhHHHhcC-CCCHHHHHHHHHHHHHHcCCchhhhhhhhCCc
Confidence 99988631 23456789999999988885 99999988653321 1123455667888999998842 23
Q ss_pred CCcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCC
Q 006897 201 GSFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRG 262 (627)
Q Consensus 201 ~~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G 262 (627)
..++|||+|| ||+|||+.++..+.+.|++++ + ++|+|++||+++ ++.++|||+++|++|
T Consensus 154 ~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~-~~tiiivtH~~~-~~~~~~d~i~~l~~G 230 (259)
T PRK14274 154 LSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLK-E-KYTIVIVTHNMQ-QAARVSDQTAFFYMG 230 (259)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHh-c-CCEEEEEEcCHH-HHHHhCCEEEEEECC
Confidence 4567999998 999999999999999999985 3 689999999998 588999999999999
Q ss_pred eEEeeCCHHHHH
Q 006897 263 SVVHYGSLELLE 274 (627)
Q Consensus 263 ~iv~~G~~~~~~ 274 (627)
+++..|+++++.
T Consensus 231 ~i~~~g~~~~~~ 242 (259)
T PRK14274 231 ELVECNDTNKMF 242 (259)
T ss_pred EEEEECCHHHHh
Confidence 999999998764
|
|
| >TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-33 Score=286.74 Aligned_cols=198 Identities=22% Similarity=0.354 Sum_probs=165.1
Q ss_pred EEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCc
Q 006897 57 VTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCH 136 (627)
Q Consensus 57 l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~ 136 (627)
|+++|+++.|+ ++.+|+|+||++++||+++|+||||||||||+++|+|+++|+. |+|.++|+
T Consensus 2 l~~~~l~~~~~---------------~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~---G~i~~~g~ 63 (256)
T TIGR03873 2 LRLSRVSWSAG---------------GRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDA---GTVDLAGV 63 (256)
T ss_pred ceEEeEEEEEC---------------CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCC---CEEEECCE
Confidence 68999999993 2469999999999999999999999999999999999998864 99999998
Q ss_pred cCCC--hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhc--CCCCCHHHHHHHHHHHHHHcCCccccC----CcCCccc
Q 006897 137 QIKK--PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFR--LKGMSHKEKEDRVESLMDELGLTHVAG----SFVGDEE 208 (627)
Q Consensus 137 ~~~~--~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~--~~~~~~~~~~~~v~~~l~~lgL~~~~~----~~~gGe~ 208 (627)
++.. ....++.++|++|++.+++.+||.||+.++.... ......++..+++.++++.+|+.+..+ .++|||+
T Consensus 64 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~ 143 (256)
T TIGR03873 64 DLHGLSRRARARRVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGER 143 (256)
T ss_pred EcccCCHHHHhhheEEecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHH
Confidence 8632 2345667999999987777889999998853110 001112334567899999999976554 4569999
Q ss_pred cC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeCCH
Q 006897 209 NR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGSL 270 (627)
Q Consensus 209 qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~ 270 (627)
|| ||+|||+.++..+.+.|+++++ .|+|||++||+++ ++.++||++++|++|++++.|+.
T Consensus 144 qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~ 221 (256)
T TIGR03873 144 QRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAA-TGVTVVAALHDLN-LAASYCDHVVVLDGGRVVAAGPP 221 (256)
T ss_pred HHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCHH-HHHHhCCEEEEEeCCCEEEecCH
Confidence 98 9999999999999999999975 4899999999998 48899999999999999999998
Q ss_pred HHHH
Q 006897 271 ELLE 274 (627)
Q Consensus 271 ~~~~ 274 (627)
+++.
T Consensus 222 ~~~~ 225 (256)
T TIGR03873 222 REVL 225 (256)
T ss_pred HHhh
Confidence 7753
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. |
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-34 Score=280.63 Aligned_cols=182 Identities=26% Similarity=0.460 Sum_probs=152.2
Q ss_pred EEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCcc
Q 006897 58 TVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQ 137 (627)
Q Consensus 58 ~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~ 137 (627)
+++||+++|+. .+.+|+|+||++++||+++|+|||||||||||++|+|+++|++ |+|.++|++
T Consensus 1 ~~~~l~~~~~~--------------~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~---G~i~~~g~~ 63 (205)
T cd03226 1 RIENISFSYKK--------------GTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESS---GSILLNGKP 63 (205)
T ss_pred CcccEEEEeCC--------------cCceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCc---eEEEECCEE
Confidence 36899999931 1459999999999999999999999999999999999999864 999999988
Q ss_pred CCChhhhcccEEEEccCCC-CCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccCC----cCCccccC--
Q 006897 138 IKKPAQLRKICGFVAQEDN-LLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAGS----FVGDEENR-- 210 (627)
Q Consensus 138 ~~~~~~~r~~ig~v~Q~~~-l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~----~~gGe~qr-- 210 (627)
+.. ...++.+||++|++. .+..+|++||+.++.... + +..++++++++.+||++..++ ++|||+||
T Consensus 64 ~~~-~~~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~--~----~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ 136 (205)
T cd03226 64 IKA-KERRKSIGYVMQDVDYQLFTDSVREELLLGLKEL--D----AGNEQAETVLKDLDLYALKERHPLSLSGGQKQRLA 136 (205)
T ss_pred hhh-HHhhcceEEEecChhhhhhhccHHHHHhhhhhhc--C----ccHHHHHHHHHHcCCchhcCCCchhCCHHHHHHHH
Confidence 532 445678999999974 234579999998864321 1 123568899999999876554 56999999
Q ss_pred ----------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEE
Q 006897 211 ----------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVV 265 (627)
Q Consensus 211 ----------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv 265 (627)
||+|||+.++..+.+.|+++++ .|+|||++||+++ ++.++||++++|++|+++
T Consensus 137 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~sH~~~-~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 137 IAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAA-QGKAVIVITHDYE-FLAKVCDRVLLLANGAIV 205 (205)
T ss_pred HHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCHH-HHHHhCCEEEEEECCEEC
Confidence 9999999999999999999976 4899999999998 478899999999999874
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >cd03299 ABC_ModC_like Archeal protein closely related to ModC | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-33 Score=281.71 Aligned_cols=196 Identities=27% Similarity=0.407 Sum_probs=167.0
Q ss_pred EEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCc
Q 006897 57 VTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCH 136 (627)
Q Consensus 57 l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~ 136 (627)
|+++|+++.|. . ++|+|+||++++||+++|+||||||||||+++|+|+++|+. |+|.++|.
T Consensus 1 l~~~~l~~~~~---------------~-~~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~---G~v~i~g~ 61 (235)
T cd03299 1 LKVENLSKDWK---------------E-FKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDS---GKILLNGK 61 (235)
T ss_pred CeeEeEEEEeC---------------C-ceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCc---eEEEECCE
Confidence 46899999993 2 27999999999999999999999999999999999999864 99999998
Q ss_pred cCCChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccC----CcCCccccC--
Q 006897 137 QIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAG----SFVGDEENR-- 210 (627)
Q Consensus 137 ~~~~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~----~~~gGe~qr-- 210 (627)
++......++.++|++|++.+++.+|+.||+.+..... +....+.++++.++++.+||.+..+ .++|||+||
T Consensus 62 ~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~ 139 (235)
T cd03299 62 DITNLPPEKRDISYVPQNYALFPHMTVYKNIAYGLKKR--KVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVA 139 (235)
T ss_pred EcCcCChhHcCEEEEeecCccCCCccHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHcCChhHHhcCcccCCHHHHHHHH
Confidence 86432234678999999999998899999998865322 2234556677889999999976554 456999998
Q ss_pred ----------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeCCHHHHH
Q 006897 211 ----------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGSLELLE 274 (627)
Q Consensus 211 ----------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~ 274 (627)
||+|||+.+++.+.+.|++++++.|+|||++||+++ ++.++||++++|++|++++.|+++++.
T Consensus 140 laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 218 (235)
T cd03299 140 IARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFE-EAWALADKVAIMLNGKLIQVGKPEEVF 218 (235)
T ss_pred HHHHHHcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEecCHHHHH
Confidence 999999999999999999997655899999999998 478899999999999999999987653
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14256 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-33 Score=283.72 Aligned_cols=200 Identities=24% Similarity=0.367 Sum_probs=166.1
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC--CCCCccceEEE
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVR--DQDFDPRSITV 133 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~--~~~~~~G~i~i 133 (627)
.|+++|++++|+ ++.+|+|+||+|++||+++|+||||||||||+++|+|+++ |...+.|+|.+
T Consensus 4 ~l~~~nl~~~~~---------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~ 68 (252)
T PRK14256 4 KVKLEQLNVHFG---------------KNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILL 68 (252)
T ss_pred EEEEEEEEEEeC---------------CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEE
Confidence 589999999993 2359999999999999999999999999999999999986 42113499999
Q ss_pred CCccCCC----hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCcc--------ccC
Q 006897 134 NCHQIKK----PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTH--------VAG 201 (627)
Q Consensus 134 ~g~~~~~----~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~--------~~~ 201 (627)
+|+++.. ...+++.++|+||++.+++.+|+.||+.++..... .....+.+++++++++.+|+.+ ...
T Consensus 69 ~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~ 147 (252)
T PRK14256 69 DDTDIYDRGVDPVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNG-RVNRSEADEIVESSLKRVALWDEVKDRLKSNAM 147 (252)
T ss_pred CCEEcccccCChHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcC-CCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcC
Confidence 9988632 23467789999999999998999999987643221 1233445667899999999853 234
Q ss_pred CcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCe
Q 006897 202 SFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGS 263 (627)
Q Consensus 202 ~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~ 263 (627)
.++|||+|| ||+|||+.++..+.+.|+++++ ++|||++||+++ ++.++||++++|++|+
T Consensus 148 ~LS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~--~~tiiivsH~~~-~~~~~~d~i~~l~~G~ 224 (252)
T PRK14256 148 ELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKE--KYTIIIVTHNMQ-QAARVSDYTAFFYMGD 224 (252)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh--CCcEEEEECCHH-HHHhhCCEEEEEECCE
Confidence 567999998 9999999999999999999964 589999999998 5889999999999999
Q ss_pred EEeeCCHHHHH
Q 006897 264 VVHYGSLELLE 274 (627)
Q Consensus 264 iv~~G~~~~~~ 274 (627)
+++.|+++++.
T Consensus 225 i~~~~~~~~~~ 235 (252)
T PRK14256 225 LVECGETKKIF 235 (252)
T ss_pred EEEeCCHHHHH
Confidence 99999987763
|
|
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-33 Score=302.92 Aligned_cols=214 Identities=27% Similarity=0.390 Sum_probs=179.7
Q ss_pred CcceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEE
Q 006897 53 TTCKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSIT 132 (627)
Q Consensus 53 ~~~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~ 132 (627)
..+.++++||++.|..+... + ....+..++++||||++++||++||+|+||||||||.|+|+|+++|++ |+|.
T Consensus 277 ~~~ll~V~~l~k~y~~~~~~---~-~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~---G~i~ 349 (539)
T COG1123 277 AEPLLSVRNLSKRYGSRKGL---F-VRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSS---GSII 349 (539)
T ss_pred cCceeEeeeeeeeecccccc---c-cccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---ceEE
Confidence 35679999999999643210 0 011245679999999999999999999999999999999999999954 9999
Q ss_pred ECCccC--C--ChhhhcccEEEEccCC--CCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCcc-cc----C
Q 006897 133 VNCHQI--K--KPAQLRKICGFVAQED--NLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTH-VA----G 201 (627)
Q Consensus 133 i~g~~~--~--~~~~~r~~ig~v~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~----~ 201 (627)
++|.+. . +....|+.+-+||||+ .+.|.+||+++|......+... ..++.++++.++++.+||.. .. +
T Consensus 350 ~~g~~~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~-~~~~~~~rv~~ll~~VgL~~~~l~ryP~ 428 (539)
T COG1123 350 FDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGG-SGAERRARVAELLELVGLPPEFLDRYPH 428 (539)
T ss_pred EeCcccccccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhccc-chHHHHHHHHHHHHHcCCCHHHHhcCch
Confidence 999873 1 1245677899999985 6899999999999987654322 35677788999999999975 33 4
Q ss_pred CcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCe
Q 006897 202 SFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGS 263 (627)
Q Consensus 202 ~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~ 263 (627)
.++|||||| |+|.||+..+.+++++|+++.++.|.|.|+||||++. +..+||||++|++|+
T Consensus 429 elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~v-V~~i~drv~vm~~G~ 507 (539)
T COG1123 429 ELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAV-VRYIADRVAVMYDGR 507 (539)
T ss_pred hcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHH-HHhhCceEEEEECCe
Confidence 566999999 9999999999999999999999999999999999995 899999999999999
Q ss_pred EEeeCCHHHHHH
Q 006897 264 VVHYGSLELLEE 275 (627)
Q Consensus 264 iv~~G~~~~~~~ 275 (627)
|++.|+.+++.+
T Consensus 508 iVE~G~~~~v~~ 519 (539)
T COG1123 508 IVEEGPTEKVFE 519 (539)
T ss_pred EEEeCCHHHHhc
Confidence 999998887743
|
|
| >PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-33 Score=287.29 Aligned_cols=208 Identities=20% Similarity=0.346 Sum_probs=168.7
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
+|+++||+++|..+.. ....+.+++|+|+||++++||+++|+||||||||||+++|+|+++|++ |+|.++|
T Consensus 4 ~l~~~~l~~~~~~~~~------~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~---G~i~~~g 74 (267)
T PRK15112 4 LLEVRNLSKTFRYRTG------WFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTS---GELLIDD 74 (267)
T ss_pred eEEEeceEEEecCCCC------cccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCC---CEEEECC
Confidence 6999999999942100 000013469999999999999999999999999999999999999864 9999999
Q ss_pred ccCCC--hhhhcccEEEEccCCC--CCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCc-ccc----CCcCCc
Q 006897 136 HQIKK--PAQLRKICGFVAQEDN--LLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLT-HVA----GSFVGD 206 (627)
Q Consensus 136 ~~~~~--~~~~r~~ig~v~Q~~~--l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~----~~~~gG 206 (627)
+++.. ....++.++|++|++. +++.+|+.|++.+...... ....++..++++++++.+||. +.. ..++||
T Consensus 75 ~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G 153 (267)
T PRK15112 75 HPLHFGDYSYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNT-DLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPG 153 (267)
T ss_pred EECCCCchhhHhccEEEEecCchhhcCcchhHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHHcCCChHHHhcCchhcCHH
Confidence 88632 2234567999999974 5678899999988654321 223445567789999999994 433 456799
Q ss_pred cccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeC
Q 006897 207 EENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYG 268 (627)
Q Consensus 207 e~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G 268 (627)
|+|| ||+|||+.++..+.+.|++++++.|+|||++||+++ ++.++||++++|++|++++.|
T Consensus 154 ~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~-~~~~~~d~i~~l~~G~i~~~~ 232 (267)
T PRK15112 154 QKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLG-MMKHISDQVLVMHQGEVVERG 232 (267)
T ss_pred HHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHH-HHHHhcCEEEEEECCEEEecC
Confidence 9998 999999999999999999998756899999999998 588899999999999999999
Q ss_pred CHHHHH
Q 006897 269 SLELLE 274 (627)
Q Consensus 269 ~~~~~~ 274 (627)
+++++.
T Consensus 233 ~~~~~~ 238 (267)
T PRK15112 233 STADVL 238 (267)
T ss_pred CHHHHh
Confidence 887664
|
|
| >TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-33 Score=299.13 Aligned_cols=190 Identities=23% Similarity=0.427 Sum_probs=162.7
Q ss_pred eEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCccCCC
Q 006897 61 NLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKK 140 (627)
Q Consensus 61 nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~~~~ 140 (627)
||+++|+ ++. + |+||++++||+++|+||||||||||||+|+|+++|++ |+|.++|+++..
T Consensus 4 ~l~~~~~---------------~~~-~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~---G~I~~~g~~i~~ 63 (354)
T TIGR02142 4 RFSKRLG---------------DFS-L-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDE---GEIVLNGRTLFD 63 (354)
T ss_pred EEEEEEC---------------CEE-E-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCc---eEEEECCEECcc
Confidence 8899993 223 4 9999999999999999999999999999999999864 999999988632
Q ss_pred h------hhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccCC----cCCccccC
Q 006897 141 P------AQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAGS----FVGDEENR 210 (627)
Q Consensus 141 ~------~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~----~~gGe~qr 210 (627)
. ...++.++|++|++.+++.+||+||+.++.... ...+.+++++++++.+||++..++ ++|||+||
T Consensus 64 ~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~----~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGqkqR 139 (354)
T TIGR02142 64 SRKGIFLPPEKRRIGYVFQEARLFPHLSVRGNLRYGMKRA----RPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQR 139 (354)
T ss_pred CccccccchhhCCeEEEecCCccCCCCcHHHHHHHHhhcc----ChhHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHH
Confidence 1 235678999999999999999999999875321 223455678999999999876654 56999999
Q ss_pred ------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeCCHHH
Q 006897 211 ------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGSLEL 272 (627)
Q Consensus 211 ------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~ 272 (627)
||+|||+.++..+.+.|++++++.|+|||++|||++ ++.++||++++|++|+++..|++++
T Consensus 140 valAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~ 218 (354)
T TIGR02142 140 VAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQ-EVLRLADRVVVLEDGRVAAAGPIAE 218 (354)
T ss_pred HHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEeCCEEEEECCHHH
Confidence 999999999999999999998766899999999998 5889999999999999999999987
Q ss_pred HHH
Q 006897 273 LEE 275 (627)
Q Consensus 273 ~~~ 275 (627)
+..
T Consensus 219 ~~~ 221 (354)
T TIGR02142 219 VWA 221 (354)
T ss_pred Hhc
Confidence 753
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. |
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-33 Score=287.68 Aligned_cols=201 Identities=24% Similarity=0.360 Sum_probs=166.2
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
.|+++||+++|+.+. ...+++|+|+||++++||+++|+||||||||||+++|+|+++|++ |+|.++|
T Consensus 2 ~l~~~~l~~~~~~~~----------~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~---G~i~~~g 68 (280)
T PRK13649 2 GINLQNVSYTYQAGT----------PFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQ---GSVRVDD 68 (280)
T ss_pred eEEEEEEEEEcCCCC----------ccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCc---eEEEECC
Confidence 489999999994210 011359999999999999999999999999999999999999864 9999999
Q ss_pred ccCCC------hhhhcccEEEEccCC--CCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCcc-cc----CC
Q 006897 136 HQIKK------PAQLRKICGFVAQED--NLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTH-VA----GS 202 (627)
Q Consensus 136 ~~~~~------~~~~r~~ig~v~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~----~~ 202 (627)
+++.. ...+++.++|++|++ .+++ .||+||+.+..... +.+.++.+++++++++.+||.+ .. ..
T Consensus 69 ~~i~~~~~~~~~~~~~~~i~~~~q~~~~~~~~-~tv~e~l~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 145 (280)
T PRK13649 69 TLITSTSKNKDIKQIRKKVGLVFQFPESQLFE-ETVLKDVAFGPQNF--GVSQEEAEALAREKLALVGISESLFEKNPFE 145 (280)
T ss_pred EEccccccccCHHHHHhheEEEeeChhhhhcc-ccHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHcCCChhhhhCCccc
Confidence 87632 134667899999996 4555 69999999865322 2234555677889999999963 33 45
Q ss_pred cCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeE
Q 006897 203 FVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSV 264 (627)
Q Consensus 203 ~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~i 264 (627)
++|||+|| ||+|||+.++..+.+.|+++++ .|+|||++||+++ ++.++||++++|++|++
T Consensus 146 LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiiivsH~~~-~~~~~~d~i~~l~~G~i 223 (280)
T PRK13649 146 LSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQ-SGMTIVLVTHLMD-DVANYADFVYVLEKGKL 223 (280)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEeccHH-HHHHhCCEEEEEECCEE
Confidence 67999998 9999999999999999999976 4899999999998 48889999999999999
Q ss_pred EeeCCHHHHH
Q 006897 265 VHYGSLELLE 274 (627)
Q Consensus 265 v~~G~~~~~~ 274 (627)
++.|+++++.
T Consensus 224 ~~~g~~~~~~ 233 (280)
T PRK13649 224 VLSGKPKDIF 233 (280)
T ss_pred EEeCCHHHHh
Confidence 9999988764
|
|
| >PRK14241 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-33 Score=284.46 Aligned_cols=200 Identities=20% Similarity=0.352 Sum_probs=165.9
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCC--CccceEEE
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQD--FDPRSITV 133 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~--~~~G~i~i 133 (627)
.|+++|++++|+ ++.+|+|+||++++||+++|+||||||||||+++|+|+++|.. .++|+|.+
T Consensus 4 ~l~i~~v~~~~~---------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~ 68 (258)
T PRK14241 4 RIDVKDLNIYYG---------------SFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLL 68 (258)
T ss_pred cEEEeeEEEEEC---------------CEeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEE
Confidence 689999999993 2359999999999999999999999999999999999987521 12499999
Q ss_pred CCccCCC----hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCc----cc----cC
Q 006897 134 NCHQIKK----PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLT----HV----AG 201 (627)
Q Consensus 134 ~g~~~~~----~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~~----~~ 201 (627)
+|+++.. ...+++.++|++|++.+++.+||+||+.++...+. ..++++.+++++++++.+||. +. ..
T Consensus 69 ~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~ 147 (258)
T PRK14241 69 DGEDLYGPGVDPVAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNG-VRNKKDLDELVEKSLRGANLWNEVKDRLDKPGG 147 (258)
T ss_pred CCEeccccccChHHHhcceEEEccccccCCCCcHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcc
Confidence 9987521 23567789999999999998999999998754321 113445567789999999883 22 34
Q ss_pred CcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeec---
Q 006897 202 SFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILS--- 260 (627)
Q Consensus 202 ~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~--- 260 (627)
.++|||+|| ||+|||+.++..+.+.|+++++ ++|||++||+++ ++.++||++++|+
T Consensus 148 ~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tviivsH~~~-~~~~~~d~i~~l~~~~ 224 (258)
T PRK14241 148 GLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQ--DYTIVIVTHNMQ-QAARVSDQTAFFNLEA 224 (258)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc--CCEEEEEecCHH-HHHHhCCEEEEEeccc
Confidence 567999998 9999999999999999999953 589999999998 4889999999996
Q ss_pred ---CCeEEeeCCHHHHH
Q 006897 261 ---RGSVVHYGSLELLE 274 (627)
Q Consensus 261 ---~G~iv~~G~~~~~~ 274 (627)
+|++++.|+++++.
T Consensus 225 ~~~~g~i~~~~~~~~~~ 241 (258)
T PRK14241 225 TGKPGRLVEIDDTEKIF 241 (258)
T ss_pred CCCCceEEecCCHHHHH
Confidence 79999999988764
|
|
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-33 Score=280.15 Aligned_cols=195 Identities=26% Similarity=0.405 Sum_probs=161.3
Q ss_pred ceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEEC
Q 006897 55 CKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVN 134 (627)
Q Consensus 55 ~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~ 134 (627)
.+|+++||+++|+.+. ..+.+|+|+||++++||+++|+||||||||||+++|+|+++|++ |+|.++
T Consensus 5 ~~l~~~~l~~~~~~~~-----------~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~---G~i~~~ 70 (228)
T PRK10584 5 NIVEVHHLKKSVGQGE-----------HELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSS---GEVSLV 70 (228)
T ss_pred ceEEEeeeEEEccCCC-----------cceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCC---eeEEEC
Confidence 3799999999994210 11359999999999999999999999999999999999998864 999999
Q ss_pred CccCCC--hh---hh-cccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccC----CcC
Q 006897 135 CHQIKK--PA---QL-RKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAG----SFV 204 (627)
Q Consensus 135 g~~~~~--~~---~~-r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~----~~~ 204 (627)
|+++.. .. .. ++.++|++|++.+++.+|+.||+.+....+ +...++.++++.++++.+||.+..+ .++
T Consensus 71 g~~~~~~~~~~~~~~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS 148 (228)
T PRK10584 71 GQPLHQMDEEARAKLRAKHVGFVFQSFMLIPTLNALENVELPALLR--GESSRQSRNGAKALLEQLGLGKRLDHLPAQLS 148 (228)
T ss_pred CEEcccCCHHHHHHHHhheEEEEEcccccCCCcCHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCHhHhhCChhhCC
Confidence 987632 11 12 357999999999999899999998865332 2234456678999999999976544 456
Q ss_pred CccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEe
Q 006897 205 GDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVH 266 (627)
Q Consensus 205 gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~ 266 (627)
|||+|| ||+|||+.++..+.+.|++++++.|.|||++|||++ .+ +.||++++|++|++++
T Consensus 149 ~Ge~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~-~~~d~i~~l~~g~i~~ 226 (228)
T PRK10584 149 GGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQ-LA-ARCDRRLRLVNGQLQE 226 (228)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HH-HhCCEEEEEECCEEEe
Confidence 999998 999999999999999999997666899999999998 35 5699999999999875
Q ss_pred e
Q 006897 267 Y 267 (627)
Q Consensus 267 ~ 267 (627)
.
T Consensus 227 ~ 227 (228)
T PRK10584 227 E 227 (228)
T ss_pred c
Confidence 3
|
|
| >PRK14239 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-33 Score=282.60 Aligned_cols=198 Identities=26% Similarity=0.362 Sum_probs=163.4
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC--CCCCccceEEE
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVR--DQDFDPRSITV 133 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~--~~~~~~G~i~i 133 (627)
+|+++||+++|. ++.+|+|+||++++||+++|+||||||||||+++|+|+.+ |+..+.|+|.+
T Consensus 5 ~l~~~~l~~~~~---------------~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~ 69 (252)
T PRK14239 5 ILQVSDLSVYYN---------------KKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVY 69 (252)
T ss_pred eEEEEeeEEEEC---------------CeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEE
Confidence 699999999993 2359999999999999999999999999999999999854 53112499999
Q ss_pred CCccCCC----hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHHHcCCcc--------cc
Q 006897 134 NCHQIKK----PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGM-SHKEKEDRVESLMDELGLTH--------VA 200 (627)
Q Consensus 134 ~g~~~~~----~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~-~~~~~~~~v~~~l~~lgL~~--------~~ 200 (627)
+|+++.. ...+++.++|++|++.+++ +||+||+.++.... +. ..+..++++.++++.+++.+ ..
T Consensus 70 ~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~ 146 (252)
T PRK14239 70 NGHNIYSPRTDTVDLRKEIGMVFQQPNPFP-MSIYENVVYGLRLK--GIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSA 146 (252)
T ss_pred CCEECcCcccchHhhhhcEEEEecCCccCc-CcHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCc
Confidence 9988632 2345678999999998887 79999999875332 22 23344567888999998732 23
Q ss_pred CCcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCC
Q 006897 201 GSFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRG 262 (627)
Q Consensus 201 ~~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G 262 (627)
..++|||+|| ||+|||+.++..+.++|+++++ ++|||++||+++ ++.++|||+++|++|
T Consensus 147 ~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tii~~sH~~~-~~~~~~d~i~~l~~G 223 (252)
T PRK14239 147 LGLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKD--DYTMLLVTRSMQ-QASRISDRTGFFLDG 223 (252)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhh--CCeEEEEECCHH-HHHHhCCEEEEEECC
Confidence 4567999998 9999999999999999999863 589999999998 588999999999999
Q ss_pred eEEeeCCHHHHH
Q 006897 263 SVVHYGSLELLE 274 (627)
Q Consensus 263 ~iv~~G~~~~~~ 274 (627)
++++.|+++++.
T Consensus 224 ~i~~~g~~~~~~ 235 (252)
T PRK14239 224 DLIEYNDTKQMF 235 (252)
T ss_pred EEEEeCCHHHHH
Confidence 999999988763
|
|
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-33 Score=289.92 Aligned_cols=202 Identities=21% Similarity=0.377 Sum_probs=166.3
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
.|+++||+++|+.+. .....+|+|+||++++||+++|+||||||||||+|+|+|+++|++ |+|.++|
T Consensus 6 ~l~i~nl~~~~~~~~----------~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~---G~i~~~g 72 (289)
T PRK13645 6 DIILDNVSYTYAKKT----------PFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISET---GQTIVGD 72 (289)
T ss_pred eEEEEEEEEEeCCCC----------ccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCC---ceEEECC
Confidence 589999999994210 001359999999999999999999999999999999999998864 9999999
Q ss_pred ccCCC-------hhhhcccEEEEccCCC--CCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCc-ccc----C
Q 006897 136 HQIKK-------PAQLRKICGFVAQEDN--LLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLT-HVA----G 201 (627)
Q Consensus 136 ~~~~~-------~~~~r~~ig~v~Q~~~--l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~----~ 201 (627)
+++.. ...+++.++|++|++. +++ .|++||+.++.... +...++..++++++++.++|. +.. .
T Consensus 73 ~~i~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~-~tv~enl~~~~~~~--~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~ 149 (289)
T PRK13645 73 YAIPANLKKIKEVKRLRKEIGLVFQFPEYQLFQ-ETIEKDIAFGPVNL--GENKQEAYKKVPELLKLVQLPEDYVKRSPF 149 (289)
T ss_pred EEccccccccccHHHHhccEEEEEeCcchhhhh-hHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHcCCChhHhcCChh
Confidence 87521 2346778999999963 444 59999999865321 223445566788999999994 444 4
Q ss_pred CcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCe
Q 006897 202 SFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGS 263 (627)
Q Consensus 202 ~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~ 263 (627)
.++|||+|| ||+|||+.++..+.+.|++++++.|+|||++||+++ ++.++||++++|++|+
T Consensus 150 ~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~-~~~~~~d~i~~l~~G~ 228 (289)
T PRK13645 150 ELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMD-QVLRIADEVIVMHEGK 228 (289)
T ss_pred hCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEECCE
Confidence 566999999 999999999999999999997656899999999998 5889999999999999
Q ss_pred EEeeCCHHHHH
Q 006897 264 VVHYGSLELLE 274 (627)
Q Consensus 264 iv~~G~~~~~~ 274 (627)
+++.|+++++.
T Consensus 229 i~~~g~~~~~~ 239 (289)
T PRK13645 229 VISIGSPFEIF 239 (289)
T ss_pred EEEeCCHHHHh
Confidence 99999988764
|
|
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-34 Score=322.26 Aligned_cols=193 Identities=24% Similarity=0.431 Sum_probs=164.9
Q ss_pred ceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEEC
Q 006897 55 CKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVN 134 (627)
Q Consensus 55 ~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~ 134 (627)
..++++||+|+|... +..+|+|+|++|++||.+||+|+||||||||+|+|+|+++|.. |+|.+|
T Consensus 470 g~I~~~nvsf~y~~~-------------~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~---G~I~~d 533 (709)
T COG2274 470 GEIEFENVSFRYGPD-------------DPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQ---GRILLD 533 (709)
T ss_pred ceEEEEEEEEEeCCC-------------CcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCC---ceEEEC
Confidence 369999999999532 2369999999999999999999999999999999999999975 999999
Q ss_pred CccCC--ChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCcccc------------
Q 006897 135 CHQIK--KPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVA------------ 200 (627)
Q Consensus 135 g~~~~--~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~------------ 200 (627)
|.|+. +...+|++||||+||+.+|.+ |++||+.++. +.. ..+++.++++..|.++..
T Consensus 534 g~dl~~i~~~~lR~~ig~V~Q~~~Lf~g-SI~eNi~l~~----p~~----~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~ 604 (709)
T COG2274 534 GVDLNDIDLASLRRQVGYVLQDPFLFSG-SIRENIALGN----PEA----TDEEIIEAAQLAGAHEFIENLPMGYDTPVG 604 (709)
T ss_pred CEeHHhcCHHHHHhheeEEcccchhhcC-cHHHHHhcCC----CCC----CHHHHHHHHHHhCcHHHHHhcccccccccc
Confidence 99973 467899999999999999987 9999999863 221 234556666666654432
Q ss_pred ---CCcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheee
Q 006897 201 ---GSFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLIL 259 (627)
Q Consensus 201 ---~~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL 259 (627)
..++|||||| |||+||+.+++.+.+.|.++. .|+|+|+++|+++ ..+.||||++|
T Consensus 605 E~G~~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~--~~~T~I~IaHRl~--ti~~adrIiVl 680 (709)
T COG2274 605 EGGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQIL--QGRTVIIIAHRLS--TIRSADRIIVL 680 (709)
T ss_pred cCCCCCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHh--cCCeEEEEEccch--HhhhccEEEEc
Confidence 3456999999 899999999999999999986 4799999999997 57899999999
Q ss_pred cCCeEEeeCCHHHHHHH
Q 006897 260 SRGSVVHYGSLELLEET 276 (627)
Q Consensus 260 ~~G~iv~~G~~~~~~~~ 276 (627)
++|+++++|+.+++.+.
T Consensus 681 ~~Gkiv~~gs~~ell~~ 697 (709)
T COG2274 681 DQGKIVEQGSHEELLAQ 697 (709)
T ss_pred cCCceeccCCHHHHHHh
Confidence 99999999999998764
|
|
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-33 Score=282.71 Aligned_cols=199 Identities=25% Similarity=0.361 Sum_probs=164.0
Q ss_pred ceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcC---CCCCCCccceE
Q 006897 55 CKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGR---VRDQDFDPRSI 131 (627)
Q Consensus 55 ~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl---~~~~~~~~G~i 131 (627)
++|+++|+++.|+ .+.+|+|+||++++||+++|+||||||||||+|+|+|+ .++. .+.|+|
T Consensus 2 ~~l~~~~~~~~~~---------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~-~~~G~i 65 (250)
T PRK14245 2 VKIDARDVNFWYG---------------DFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPAT-RLEGEI 65 (250)
T ss_pred cEEEEEEEEEEEC---------------CEeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCC-CCceEE
Confidence 3799999999993 24599999999999999999999999999999999997 3432 124999
Q ss_pred EECCccCCC----hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCcc----c----
Q 006897 132 TVNCHQIKK----PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTH----V---- 199 (627)
Q Consensus 132 ~i~g~~~~~----~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~----~---- 199 (627)
.++|+++.. ....++.++|+||++.+++ .|+.||+.++...+. ....+..+++++++++.+||.+ .
T Consensus 66 ~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~~nl~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 143 (250)
T PRK14245 66 RIDGRNIYDKGVQVDELRKNVGMVFQRPNPFP-KSIFENVAYGLRVNG-VKDNAFIRQRVEETLKGAALWDEVKDKLKES 143 (250)
T ss_pred EECCEecccccccHHHHhhheEEEecCCccCc-ccHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHcCCCcchhhhhhCC
Confidence 999988632 2345678999999998887 599999998754321 1123345567889999999853 2
Q ss_pred cCCcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecC
Q 006897 200 AGSFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSR 261 (627)
Q Consensus 200 ~~~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~ 261 (627)
...++|||+|| ||+|||+.++..+.+.|+++. + ++|||++||+++ ++.++|||+++|++
T Consensus 144 ~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~-~~tiiivtH~~~-~~~~~~d~v~~l~~ 220 (250)
T PRK14245 144 AFALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELK-K-DYTIVIVTHNMQ-QAARVSDKTAFFYM 220 (250)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-c-CCeEEEEeCCHH-HHHhhCCEEEEEEC
Confidence 24567999998 999999999999999999994 3 689999999998 48899999999999
Q ss_pred CeEEeeCCHHHHH
Q 006897 262 GSVVHYGSLELLE 274 (627)
Q Consensus 262 G~iv~~G~~~~~~ 274 (627)
|++++.|+++++.
T Consensus 221 G~~~~~~~~~~~~ 233 (250)
T PRK14245 221 GEMVEYDDTKKIF 233 (250)
T ss_pred CEEEEECCHHHHh
Confidence 9999999998774
|
|
| >COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-34 Score=304.09 Aligned_cols=191 Identities=25% Similarity=0.433 Sum_probs=166.9
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
.++++||+|+|+++ ..++|+|+||++++||.+||+|+||||||||+++|+|.++|++ |+|++||
T Consensus 336 ~l~~~~vsF~y~~~-------------~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~---G~i~~~g 399 (573)
T COG4987 336 ALELRNVSFTYPGQ-------------QTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQ---GSITLNG 399 (573)
T ss_pred eeeeccceeecCCC-------------ccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCC---CeeeECC
Confidence 69999999999643 3469999999999999999999999999999999999999864 9999999
Q ss_pred ccCCC--hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccC------------
Q 006897 136 HQIKK--PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAG------------ 201 (627)
Q Consensus 136 ~~~~~--~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~------------ 201 (627)
.++.. ++.+|+.+++++|..++|.+ |++|||.++. ++..++.+.++++++||++...
T Consensus 400 ~~~~~l~~~~~~e~i~vl~Qr~hlF~~-Tlr~NL~lA~--------~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge 470 (573)
T COG4987 400 VEIASLDEQALRETISVLTQRVHLFSG-TLRDNLRLAN--------PDASDEELWAALQQVGLEKLLESAPDGLNTWLGE 470 (573)
T ss_pred cChhhCChhhHHHHHhhhccchHHHHH-HHHHHHhhcC--------CCCCHHHHHHHHHHcCHHHHHHhChhhhhchhcc
Confidence 98743 45588999999999999987 9999999863 1234567889999999976432
Q ss_pred ---CcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeec
Q 006897 202 ---SFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILS 260 (627)
Q Consensus 202 ---~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~ 260 (627)
+++|||+|| ||.|||+.++++++++|.+.+ +|+|+|++||++.. .+.||||++|+
T Consensus 471 ~G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~--~~kTll~vTHrL~~--le~~drIivl~ 546 (573)
T COG4987 471 GGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHA--EGKTLLMVTHRLRG--LERMDRIIVLD 546 (573)
T ss_pred CCCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHh--cCCeEEEEeccccc--HhhcCEEEEEE
Confidence 345999999 999999999999999999876 48999999999984 67899999999
Q ss_pred CCeEEeeCCHHHHHH
Q 006897 261 RGSVVHYGSLELLEE 275 (627)
Q Consensus 261 ~G~iv~~G~~~~~~~ 275 (627)
+|+++++|+++++.+
T Consensus 547 ~Gkiie~G~~~~Ll~ 561 (573)
T COG4987 547 NGKIIEEGTHAELLA 561 (573)
T ss_pred CCeeeecCCHHhhhc
Confidence 999999999998865
|
|
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-33 Score=287.57 Aligned_cols=200 Identities=21% Similarity=0.345 Sum_probs=168.5
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
+|+++||+++|+.+ ..+.+|+|+||++++||+++|+|+||||||||+++|+|+++|.. |+|.++|
T Consensus 4 ~l~~~~l~~~~~~~------------~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~---G~i~~~g 68 (277)
T PRK13642 4 ILEVENLVFKYEKE------------SDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFE---GKVKIDG 68 (277)
T ss_pred eEEEEEEEEEcCCC------------CcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCC---CEEEECC
Confidence 69999999999421 12358999999999999999999999999999999999999864 9999999
Q ss_pred ccCCC--hhhhcccEEEEccCCC-CCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccC----CcCCccc
Q 006897 136 HQIKK--PAQLRKICGFVAQEDN-LLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAG----SFVGDEE 208 (627)
Q Consensus 136 ~~~~~--~~~~r~~ig~v~Q~~~-l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~----~~~gGe~ 208 (627)
+++.. ....++.+||++|++. +++..||.||+.++... .+..+++..++++++++.+||.+..+ +++|||+
T Consensus 69 ~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~ 146 (277)
T PRK13642 69 ELLTAENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGMEN--QGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQK 146 (277)
T ss_pred EECCcCCHHHHhcceEEEEECHHHhhccCCHHHHHHhhHHH--cCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHH
Confidence 88642 2356788999999974 56678999999886532 12344555678899999999976654 4569999
Q ss_pred cC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeCCH
Q 006897 209 NR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGSL 270 (627)
Q Consensus 209 qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~ 270 (627)
|| ||+|||+.++..+.+.|++++++.|+|||++||+++. +. .||++++|++|++++.|++
T Consensus 147 qrv~lAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~-~~-~~d~i~~l~~G~i~~~g~~ 224 (277)
T PRK13642 147 QRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDE-AA-SSDRILVMKAGEIIKEAAP 224 (277)
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HH-hCCEEEEEECCEEEEeCCH
Confidence 98 9999999999999999999987668999999999984 54 6999999999999999998
Q ss_pred HHHH
Q 006897 271 ELLE 274 (627)
Q Consensus 271 ~~~~ 274 (627)
+++.
T Consensus 225 ~~~~ 228 (277)
T PRK13642 225 SELF 228 (277)
T ss_pred HHHh
Confidence 8764
|
|
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-33 Score=278.35 Aligned_cols=186 Identities=26% Similarity=0.484 Sum_probs=154.6
Q ss_pred EEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCcc
Q 006897 58 TVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQ 137 (627)
Q Consensus 58 ~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~ 137 (627)
+++|++++|+. ..+.+|+|+||++++||+++|+||||||||||+|+|+|+++|++ |+|.++|++
T Consensus 1 ~~~~l~~~~~~-------------~~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g~~ 64 (211)
T cd03225 1 ELKNLSFSYPD-------------GARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTS---GEVLVDGKD 64 (211)
T ss_pred CceeEEEecCC-------------CCeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCC---ceEEECCEE
Confidence 36899999942 11469999999999999999999999999999999999998864 999999987
Q ss_pred CCC--hhhhcccEEEEccCCC-CCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCcccc----CCcCCccccC
Q 006897 138 IKK--PAQLRKICGFVAQEDN-LLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVA----GSFVGDEENR 210 (627)
Q Consensus 138 ~~~--~~~~r~~ig~v~Q~~~-l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~----~~~~gGe~qr 210 (627)
+.. ....++.++|++|++. .++.+|++||+.+..... +...++.+++++++++.+||++.. ..++|||+||
T Consensus 65 ~~~~~~~~~~~~i~~~~q~~~~~~~~~t~~~~l~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qr 142 (211)
T cd03225 65 LTKLSLKELRRKVGLVFQNPDDQFFGPTVEEEVAFGLENL--GLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQR 142 (211)
T ss_pred cccCCHHHHHhhceEEecChhhhcCCCcHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHH
Confidence 632 2446678999999974 356789999998865322 223444566789999999997544 4566999998
Q ss_pred ------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCe
Q 006897 211 ------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGS 263 (627)
Q Consensus 211 ------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~ 263 (627)
||+|||+.++..+.+.|++++++ |+|||++||+++ ++.++||++++|++|+
T Consensus 143 v~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~-~~tvi~~sH~~~-~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 143 VAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAE-GKTIIIVTHDLD-LLLELADRVIVLEDGK 211 (211)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHc-CCEEEEEeCCHH-HHHHhCCEEEEEeCCC
Confidence 99999999999999999999765 899999999998 5888999999999985
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=304.10 Aligned_cols=191 Identities=25% Similarity=0.438 Sum_probs=164.8
Q ss_pred ceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEEC
Q 006897 55 CKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVN 134 (627)
Q Consensus 55 ~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~ 134 (627)
..++.+|+++.|+++ +++++|+||++++|+.+||+|+||||||||+++|+|+.+|+. |+|.+|
T Consensus 319 ~ei~~~~l~~~y~~g--------------~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~---G~I~vn 381 (559)
T COG4988 319 IEISLENLSFRYPDG--------------KPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQ---GEIRVN 381 (559)
T ss_pred ceeeecceEEecCCC--------------CcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCC---ceEEEC
Confidence 356777999999532 369999999999999999999999999999999999999864 999999
Q ss_pred CccCCC--hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccCC----------
Q 006897 135 CHQIKK--PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAGS---------- 202 (627)
Q Consensus 135 g~~~~~--~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~---------- 202 (627)
|.+..+ ...+|++++||+|++.+|+. |++||+.++. .+..++.+.+++++.||.+..+.
T Consensus 382 g~~l~~l~~~~~~k~i~~v~Q~p~lf~g-TireNi~l~~--------~~~s~e~i~~al~~a~l~~~v~~p~GLdt~ige 452 (559)
T COG4988 382 GIDLRDLSPEAWRKQISWVSQNPYLFAG-TIRENILLAR--------PDASDEEIIAALDQAGLLEFVPKPDGLDTVIGE 452 (559)
T ss_pred CccccccCHHHHHhHeeeeCCCCccccc-cHHHHhhccC--------CcCCHHHHHHHHHHhcHHHhhcCCCcccchhcc
Confidence 998743 56799999999999999987 9999999862 12335667888888887655433
Q ss_pred ----cCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeec
Q 006897 203 ----FVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILS 260 (627)
Q Consensus 203 ----~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~ 260 (627)
++|||+|| ||++||.++++.|.+.|.++++ ++|+|++||++. ...-+|+|++|+
T Consensus 453 ~G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~--~ktvl~itHrl~--~~~~~D~I~vld 528 (559)
T COG4988 453 GGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAK--QKTVLVITHRLE--DAADADRIVVLD 528 (559)
T ss_pred CCCCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHh--CCeEEEEEcChH--HHhcCCEEEEec
Confidence 45899999 9999999999999999999985 589999999997 467799999999
Q ss_pred CCeEEeeCCHHHHHH
Q 006897 261 RGSVVHYGSLELLEE 275 (627)
Q Consensus 261 ~G~iv~~G~~~~~~~ 275 (627)
+|++++.|+++++.+
T Consensus 529 ~G~l~~~g~~~~L~~ 543 (559)
T COG4988 529 NGRLVEQGTHEELSE 543 (559)
T ss_pred CCceeccCCHHHHhh
Confidence 999999999998854
|
|
| >PRK14270 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-33 Score=281.67 Aligned_cols=199 Identities=23% Similarity=0.354 Sum_probs=164.9
Q ss_pred ceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCC--CccceEE
Q 006897 55 CKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQD--FDPRSIT 132 (627)
Q Consensus 55 ~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~--~~~G~i~ 132 (627)
++|+++|++++|+ ++.+|+|+||++++||+++|+||||||||||+++|+|+.+|.. .+.|+|.
T Consensus 3 ~~l~~~~l~~~~~---------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~ 67 (251)
T PRK14270 3 IKMESKNLNLWYG---------------EKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVL 67 (251)
T ss_pred cEEEEEEeEEEEC---------------CeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEE
Confidence 4799999999993 2459999999999999999999999999999999999987510 1249999
Q ss_pred ECCccCCC----hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHHHcCCcc--------c
Q 006897 133 VNCHQIKK----PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGM-SHKEKEDRVESLMDELGLTH--------V 199 (627)
Q Consensus 133 i~g~~~~~----~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~-~~~~~~~~v~~~l~~lgL~~--------~ 199 (627)
++|+++.. ....++.+||++|++.+++ +|++||+.+..... +. ..++..++++++++.+||.+ .
T Consensus 68 ~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 144 (251)
T PRK14270 68 LDGKNIYDKDVDVVELRKRVGMVFQKPNPFP-MSIYDNVAYGPRIH--GIKDKKELDKIVEWALKKAALWDEVKDDLKKS 144 (251)
T ss_pred ECCEecccccccHHHHHhheEEEecCCCcCC-CcHHHHHHhHHHhc--CCCcHHHHHHHHHHHHHHcCCchhhhhHhhCC
Confidence 99988632 1245678999999998887 89999999875332 22 23455667888999998732 2
Q ss_pred cCCcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecC
Q 006897 200 AGSFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSR 261 (627)
Q Consensus 200 ~~~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~ 261 (627)
...++|||+|| ||+|||+.++..+.+.|+++++ ++|||++||+++ ++.++|||+++|++
T Consensus 145 ~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~--~~tiiivsH~~~-~~~~~~d~v~~l~~ 221 (251)
T PRK14270 145 ALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKK--EYTIVIVTHNMQ-QASRVSDYTAFFLM 221 (251)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--CCeEEEEEcCHH-HHHHhcCEEEEEEC
Confidence 34567999998 9999999999999999999864 589999999998 58899999999999
Q ss_pred CeEEeeCCHHHHH
Q 006897 262 GSVVHYGSLELLE 274 (627)
Q Consensus 262 G~iv~~G~~~~~~ 274 (627)
|++++.|+++++.
T Consensus 222 G~i~~~~~~~~~~ 234 (251)
T PRK14270 222 GDLIEFNKTEKIF 234 (251)
T ss_pred CeEEEeCCHHHHh
Confidence 9999999988763
|
|
| >TIGR01978 sufC FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-33 Score=281.47 Aligned_cols=198 Identities=23% Similarity=0.321 Sum_probs=162.4
Q ss_pred EEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCC--CCCCCccceEEEC
Q 006897 57 VTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRV--RDQDFDPRSITVN 134 (627)
Q Consensus 57 l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~--~~~~~~~G~i~i~ 134 (627)
|+++||+++|+ ++.+|+|+||+|++||+++|+||||||||||+|+|+|++ +|+ +|+|.++
T Consensus 1 l~~~~l~~~~~---------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~---~G~i~~~ 62 (243)
T TIGR01978 1 LKIKDLHVSVE---------------DKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVT---SGTILFK 62 (243)
T ss_pred CeEeeEEEEEC---------------CEEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCC---cceEEEC
Confidence 47899999993 245999999999999999999999999999999999995 454 3999999
Q ss_pred CccCCC--hhh-hcccEEEEccCCCCCCCCCHHHHHHHHHHhcCC-----CCCHHHHHHHHHHHHHHcCCc-ccc----C
Q 006897 135 CHQIKK--PAQ-LRKICGFVAQEDNLLPLLTVKETLMFSANFRLK-----GMSHKEKEDRVESLMDELGLT-HVA----G 201 (627)
Q Consensus 135 g~~~~~--~~~-~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~-----~~~~~~~~~~v~~~l~~lgL~-~~~----~ 201 (627)
|+++.. ... .+..++|++|++.+++.+|+.||+.+....... ..+.++..+++.++++.+||. +.. .
T Consensus 63 g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 142 (243)
T TIGR01978 63 GQDLLELEPDERARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVN 142 (243)
T ss_pred CEecCCCCHHHhhccceEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccc
Confidence 987532 222 234599999999999999999999886432110 012234456789999999996 332 2
Q ss_pred -CcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHH-hhhheeecC
Q 006897 202 -SFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQY-ISKFLILSR 261 (627)
Q Consensus 202 -~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~-~D~i~vL~~ 261 (627)
.++|||+|| ||+|||+.++..+.+.|+++++ .|+|||++|||++ ++.++ ||++++|++
T Consensus 143 ~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tvi~vsH~~~-~~~~~~~d~i~~l~~ 220 (243)
T TIGR01978 143 EGFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLRE-PDRSFLIITHYQR-LLNYIKPDYVHVLLD 220 (243)
T ss_pred cCcCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHH-CCcEEEEEEecHH-HHHhhcCCeEEEEeC
Confidence 377999998 9999999999999999999975 5899999999998 47777 899999999
Q ss_pred CeEEeeCCHHHHH
Q 006897 262 GSVVHYGSLELLE 274 (627)
Q Consensus 262 G~iv~~G~~~~~~ 274 (627)
|++++.|+++++.
T Consensus 221 G~i~~~g~~~~~~ 233 (243)
T TIGR01978 221 GRIVKSGDVELAK 233 (243)
T ss_pred CEEEEecCHHHhc
Confidence 9999999987654
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. |
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-33 Score=285.17 Aligned_cols=200 Identities=20% Similarity=0.341 Sum_probs=163.3
Q ss_pred cceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCC--CccceE
Q 006897 54 TCKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQD--FDPRSI 131 (627)
Q Consensus 54 ~~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~--~~~G~i 131 (627)
..+|+++||+++|+ .+.+|+|+||+|++||+++|+||||||||||+++|+|++++.. .+.|+|
T Consensus 11 ~~~l~i~nl~~~~~---------------~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v 75 (269)
T PRK14259 11 NIIISLQNVTISYG---------------TFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRV 75 (269)
T ss_pred CceEEEEeEEEEEC---------------CEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEE
Confidence 45799999999993 2459999999999999999999999999999999999987310 134999
Q ss_pred EECCccCC----ChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCc----c----c
Q 006897 132 TVNCHQIK----KPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLT----H----V 199 (627)
Q Consensus 132 ~i~g~~~~----~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~----~ 199 (627)
.++|+++. +...+++.++|++|++.+++. ||+||+.+.+..+ +.. .+.++++.++++.+++. + .
T Consensus 76 ~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~--~~~-~~~~~~~~~~l~~~~l~~~l~~~~~~~ 151 (269)
T PRK14259 76 LFDGTDLYDPRVDPVEVRRRIGMVFQQPNPFPK-SIYENIAFGARIN--GYT-GDMDELVERSLRKAAVWDECKDKLNES 151 (269)
T ss_pred EECCEEcccccCCHHHHhhceEEEccCCccchh-hHHHHHhhhhhhc--CCc-HHHHHHHHHHHHHhCCcchhhhhhCCC
Confidence 99998753 124567789999999988884 9999999875432 222 23456678888888763 2 2
Q ss_pred cCCcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecC
Q 006897 200 AGSFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSR 261 (627)
Q Consensus 200 ~~~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~ 261 (627)
...++|||+|| ||+|||+.++..+.++|++++ + ++|||++||+++ ++.++||++++|++
T Consensus 152 ~~~LS~G~~qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~-~-~~tiiivtH~~~-~~~~~~d~i~~l~~ 228 (269)
T PRK14259 152 GYSLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELK-K-NFTIVIVTHNMQ-QAVRVSDMTAFFNA 228 (269)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-c-CCEEEEEeCCHH-HHHHhcCEEEEEec
Confidence 34567999998 999999999999999999985 3 689999999998 58899999999996
Q ss_pred -----------CeEEeeCCHHHHHH
Q 006897 262 -----------GSVVHYGSLELLEE 275 (627)
Q Consensus 262 -----------G~iv~~G~~~~~~~ 275 (627)
|++++.|+++++.+
T Consensus 229 ~~~~~~~~g~~g~~~~~~~~~~~~~ 253 (269)
T PRK14259 229 EEVEGGSGGKVGYLVEFNETKKIFN 253 (269)
T ss_pred cccccccccccceEEEeCCHHHHHh
Confidence 67899999988753
|
|
| >cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-33 Score=281.75 Aligned_cols=205 Identities=22% Similarity=0.325 Sum_probs=163.4
Q ss_pred EEEeEEEEEccCcccc------cccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceE
Q 006897 58 TVRNLSYAIQPNTSIL------SHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSI 131 (627)
Q Consensus 58 ~~~nls~~y~~~~~~~------~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i 131 (627)
+++|+++.|....... .....++-+.+++|+|+||++++||+++|+||||||||||+++|+|+++|++ |+|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~---G~i 78 (236)
T cd03267 2 EVSNLSKSYRVYSKEPGLIGSLKSLFKRKYREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTS---GEV 78 (236)
T ss_pred ceecchhhccCcCCccccchhHHHHHhcccCCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCc---eEE
Confidence 5678888876532110 0011122244679999999999999999999999999999999999999864 999
Q ss_pred EECCccCCC-hhhhcccEEEEc-cCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccC----CcCC
Q 006897 132 TVNCHQIKK-PAQLRKICGFVA-QEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAG----SFVG 205 (627)
Q Consensus 132 ~i~g~~~~~-~~~~r~~ig~v~-Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~----~~~g 205 (627)
.++|+++.. ....++.++|++ |++.+++.+|++||+.+....+ +...++..++++++++.+||++..+ .++|
T Consensus 79 ~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~tv~e~l~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~ 156 (236)
T cd03267 79 RVAGLVPWKRRKKFLRRIGVVFGQKTQLWWDLPVIDSFYLLAAIY--DLPPARFKKRLDELSELLDLEELLDTPVRQLSL 156 (236)
T ss_pred EECCEEccccchhhcccEEEEcCCccccCCCCcHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHcCChhHhcCChhhCCH
Confidence 999987432 234567899998 5567888899999998865432 2334555667889999999976555 4569
Q ss_pred ccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEee
Q 006897 206 DEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHY 267 (627)
Q Consensus 206 Ge~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~ 267 (627)
||+|| ||+|||+.++..+.+.|++++++.|+|||++||+++ ++.++||++++|++|++++.
T Consensus 157 G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~-~~~~~~d~i~~l~~G~i~~~ 235 (236)
T cd03267 157 GQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMK-DIEALARRVLVIDKGRLLYD 235 (236)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEecCHH-HHHHhCCEEEEEeCCEEEec
Confidence 99998 999999999999999999998766899999999998 58899999999999999876
Q ss_pred C
Q 006897 268 G 268 (627)
Q Consensus 268 G 268 (627)
|
T Consensus 236 g 236 (236)
T cd03267 236 G 236 (236)
T ss_pred C
Confidence 5
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein. |
| >PRK13547 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-33 Score=286.44 Aligned_cols=202 Identities=18% Similarity=0.298 Sum_probs=164.5
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCC-----Cccce
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQD-----FDPRS 130 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~-----~~~G~ 130 (627)
+|+++|++++|+ ++.+|+|+||+|++||+++|+||||||||||+|+|+|+++|+. ...|+
T Consensus 1 ml~~~nl~~~~~---------------~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~ 65 (272)
T PRK13547 1 MLTADHLHVARR---------------HRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGD 65 (272)
T ss_pred CeEEEEEEEEEC---------------CEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceE
Confidence 489999999993 2469999999999999999999999999999999999998851 01499
Q ss_pred EEECCccCCC--hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcC--CCCCHHHHHHHHHHHHHHcCCccccC----C
Q 006897 131 ITVNCHQIKK--PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRL--KGMSHKEKEDRVESLMDELGLTHVAG----S 202 (627)
Q Consensus 131 i~i~g~~~~~--~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~--~~~~~~~~~~~v~~~l~~lgL~~~~~----~ 202 (627)
|.++|+++.. ....++.++|++|++.+++.+||+||+.++..... .+...++..++++++++.+||++..+ +
T Consensus 66 i~~~g~~~~~~~~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 145 (272)
T PRK13547 66 VTLNGEPLAAIDAPRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDVTT 145 (272)
T ss_pred EEECCEEcccCCHHHHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCccc
Confidence 9999988632 34556679999999876556899999988532111 01112344567889999999976544 4
Q ss_pred cCCccccC---------------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhh
Q 006897 203 FVGDEENR---------------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISK 255 (627)
Q Consensus 203 ~~gGe~qr---------------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~ 255 (627)
++|||+|| ||+|||+.++..+.+.|++++++.|+|||++||+++ ++.++||+
T Consensus 146 LSgG~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~-~~~~~~d~ 224 (272)
T PRK13547 146 LSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPN-LAARHADR 224 (272)
T ss_pred CCHHHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCE
Confidence 56888865 899999999999999999997655899999999998 48889999
Q ss_pred heeecCCeEEeeCCHHHH
Q 006897 256 FLILSRGSVVHYGSLELL 273 (627)
Q Consensus 256 i~vL~~G~iv~~G~~~~~ 273 (627)
+++|++|++++.|+++++
T Consensus 225 i~~l~~G~i~~~g~~~~~ 242 (272)
T PRK13547 225 IAMLADGAIVAHGAPADV 242 (272)
T ss_pred EEEEECCeEEEecCHHHH
Confidence 999999999999998776
|
|
| >PRK14258 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-32 Score=281.76 Aligned_cols=201 Identities=24% Similarity=0.377 Sum_probs=167.3
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCC--CccceEEE
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQD--FDPRSITV 133 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~--~~~G~i~i 133 (627)
.|+++|++++|+ ++.+|+|+||++++||+++|+||||||||||+++|+|+++|++ ...|+|.+
T Consensus 7 ~l~~~nl~~~~~---------------~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~ 71 (261)
T PRK14258 7 AIKVNNLSFYYD---------------TQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEF 71 (261)
T ss_pred eEEEeeEEEEeC---------------CeeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEE
Confidence 699999999993 2358999999999999999999999999999999999998741 12499999
Q ss_pred CCccCCC----hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHHHcCCcc--------cc
Q 006897 134 NCHQIKK----PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGM-SHKEKEDRVESLMDELGLTH--------VA 200 (627)
Q Consensus 134 ~g~~~~~----~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~-~~~~~~~~v~~~l~~lgL~~--------~~ 200 (627)
+|+++.. ...+++.++|++|++.+++ +|+.||+.+..... +. +..+.++++.++++.+++.+ ..
T Consensus 72 ~g~~i~~~~~~~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~ 148 (261)
T PRK14258 72 FNQNIYERRVNLNRLRRQVSMVHPKPNLFP-MSVYDNVAYGVKIV--GWRPKLEIDDIVESALKDADLWDEIKHKIHKSA 148 (261)
T ss_pred CCEEhhccccchHHhhccEEEEecCCccCc-ccHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCc
Confidence 9987521 1345778999999988888 79999998865322 21 33344567889999998742 23
Q ss_pred CCcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecC-
Q 006897 201 GSFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSR- 261 (627)
Q Consensus 201 ~~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~- 261 (627)
..++|||+|| ||+|||+.++..+.+.|++++++.|+|||++|||++ ++.++||++++|++
T Consensus 149 ~~LSgGq~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~-~i~~~~d~i~~l~~~ 227 (261)
T PRK14258 149 LDLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLH-QVSRLSDFTAFFKGN 227 (261)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHH-HHHHhcCEEEEEccC
Confidence 4567999998 999999999999999999987656899999999998 58899999999999
Q ss_pred ----CeEEeeCCHHHHHH
Q 006897 262 ----GSVVHYGSLELLEE 275 (627)
Q Consensus 262 ----G~iv~~G~~~~~~~ 275 (627)
|++++.|+++++.+
T Consensus 228 ~~~~G~i~~~~~~~~~~~ 245 (261)
T PRK14258 228 ENRIGQLVEFGLTKKIFN 245 (261)
T ss_pred CCcCceEEEeCCHHHHHh
Confidence 99999999988743
|
|
| >PRK14240 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-32 Score=280.04 Aligned_cols=199 Identities=24% Similarity=0.364 Sum_probs=164.1
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC--CCCccceEEE
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRD--QDFDPRSITV 133 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~--~~~~~G~i~i 133 (627)
.|+++||++.|+ ++.+|+|+||+|++||+++|+||||||||||+++|+|+.++ ...+.|+|.+
T Consensus 3 ~l~~~~l~~~~~---------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~ 67 (250)
T PRK14240 3 KISVKDLDLFYG---------------DFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLL 67 (250)
T ss_pred eEEEEEEEEEEC---------------CceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEE
Confidence 589999999993 23599999999999999999999999999999999998763 1112499999
Q ss_pred CCccCCC----hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCcc--------ccC
Q 006897 134 NCHQIKK----PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTH--------VAG 201 (627)
Q Consensus 134 ~g~~~~~----~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~--------~~~ 201 (627)
+|+++.. ....++.++|++|++.+++ +|++||+.+...... ..+.++.+++++++++.+++.+ ...
T Consensus 68 ~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~t~~~ni~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~ 145 (250)
T PRK14240 68 DGQDIYKSDIDVNQLRKRVGMVFQQPNPFP-MSIYDNVAYGPRTHG-IKDKKKLDEIVEKSLKGAALWDEVKDRLKKSAL 145 (250)
T ss_pred CCEEccccccchHHHhccEEEEecCCccCc-ccHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCC
Confidence 9988632 2345778999999998887 899999998753321 1133455677888999988732 234
Q ss_pred CcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCe
Q 006897 202 SFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGS 263 (627)
Q Consensus 202 ~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~ 263 (627)
.++|||+|| ||+|||+.++..+.+.|++++ + ++|||++||+++ ++.++||++++|++|+
T Consensus 146 ~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~-~~tiii~sH~~~-~~~~~~d~v~~l~~G~ 222 (250)
T PRK14240 146 GLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELK-K-DYTIVIVTHNMQ-QASRISDKTAFFLNGE 222 (250)
T ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-c-CCeEEEEEeCHH-HHHhhCCEEEEEECCE
Confidence 577999998 999999999999999999985 3 789999999998 4889999999999999
Q ss_pred EEeeCCHHHHH
Q 006897 264 VVHYGSLELLE 274 (627)
Q Consensus 264 iv~~G~~~~~~ 274 (627)
+++.|+++++.
T Consensus 223 i~~~~~~~~~~ 233 (250)
T PRK14240 223 IVEFGDTVDLF 233 (250)
T ss_pred EEEeCCHHHHH
Confidence 99999987763
|
|
| >PRK14237 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-32 Score=282.58 Aligned_cols=200 Identities=20% Similarity=0.273 Sum_probs=165.4
Q ss_pred ceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC--CCccceEE
Q 006897 55 CKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQ--DFDPRSIT 132 (627)
Q Consensus 55 ~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~--~~~~G~i~ 132 (627)
.+|+++||+++|+ .+++|+|+||++++||+++|+||||||||||+++|+|+++|. ..+.|+|.
T Consensus 19 ~~l~~~nl~~~~~---------------~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~ 83 (267)
T PRK14237 19 IALSTKDLHVYYG---------------KKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQIL 83 (267)
T ss_pred eEEEEeeEEEEEC---------------CeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEE
Confidence 4799999999993 246999999999999999999999999999999999998742 11349999
Q ss_pred ECCccCCC----hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCcc--------cc
Q 006897 133 VNCHQIKK----PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTH--------VA 200 (627)
Q Consensus 133 i~g~~~~~----~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~--------~~ 200 (627)
++|+++.. ....++.++|++|++.+++ .||+||+.++.... ....+++.++++.++++.++|.+ ..
T Consensus 84 ~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~ 161 (267)
T PRK14237 84 YRGIDINRKEINVYEMRKHIGMVFQRPNPFA-KSIYENITFALERA-GVKDKKVLDEIVETSLKQAALWDQVKDDLHKSA 161 (267)
T ss_pred ECCEEcccccCChHHHhcceEEEecCCcccc-ccHHHHHHhHHHhc-CCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCc
Confidence 99988632 2345778999999998887 59999999875321 11234455677889999998842 23
Q ss_pred CCcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCC
Q 006897 201 GSFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRG 262 (627)
Q Consensus 201 ~~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G 262 (627)
..++|||+|| ||+|||+.++..+.+.|+++. + +.|||++||+++ ++.++||++++|++|
T Consensus 162 ~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~-~~tiii~tH~~~-~~~~~~d~i~~l~~G 238 (267)
T PRK14237 162 LTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELK-K-NYTIIIVTHNMQ-QAARASDYTAFFYLG 238 (267)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-c-CCEEEEEecCHH-HHHHhcCEEEEEECC
Confidence 4566999998 999999999999999999995 3 689999999998 588999999999999
Q ss_pred eEEeeCCHHHHH
Q 006897 263 SVVHYGSLELLE 274 (627)
Q Consensus 263 ~iv~~G~~~~~~ 274 (627)
++++.|+++++.
T Consensus 239 ~i~~~g~~~~~~ 250 (267)
T PRK14237 239 DLIEYDKTRNIF 250 (267)
T ss_pred EEEEeCCHHHHh
Confidence 999999988763
|
|
| >cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-33 Score=277.19 Aligned_cols=197 Identities=37% Similarity=0.592 Sum_probs=161.7
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC---CCCCccceEE
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVR---DQDFDPRSIT 132 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~---~~~~~~G~i~ 132 (627)
.+.++|++++|... +..+.+|+|+||++++||+++|+||||||||||+|+|+|+++ |+ .|+|.
T Consensus 3 ~~~~~~~~~~~~~~-----------~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~---~G~i~ 68 (226)
T cd03234 3 VLPWWDVGLKAKNW-----------NKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTT---SGQIL 68 (226)
T ss_pred cceeecceeeeecC-----------ccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCC---ceEEE
Confidence 47899999999421 013579999999999999999999999999999999999998 54 49999
Q ss_pred ECCccCCChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCC-CCHHHHHHHHHH-HHHHcCCccccC----CcCCc
Q 006897 133 VNCHQIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKG-MSHKEKEDRVES-LMDELGLTHVAG----SFVGD 206 (627)
Q Consensus 133 i~g~~~~~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~-~~~~~~~~~v~~-~l~~lgL~~~~~----~~~gG 206 (627)
++|+++. ....++.++|++|++.+++.+||+||+.++....... ...+...+++++ .++.+++.+..+ .++||
T Consensus 69 ~~g~~~~-~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G 147 (226)
T cd03234 69 FNGQPRK-PDQFQKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGG 147 (226)
T ss_pred ECCEECC-hHHhcccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccccCcCHH
Confidence 9998853 3456788999999999999999999999875432211 122233345555 899999876544 56699
Q ss_pred cccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeC
Q 006897 207 EENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYG 268 (627)
Q Consensus 207 e~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G 268 (627)
|+|| ||+|||+.++..+.+.|+++++ .|.|+|++||++..++.++||++++|++|++++.|
T Consensus 148 ~~qrl~laral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~-~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~g 226 (226)
T cd03234 148 ERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLAR-RNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226 (226)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCCCHHHHHhCCEEEEEeCCEEEecC
Confidence 9998 9999999999999999999876 48999999999843589999999999999998865
|
The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in |
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-33 Score=277.96 Aligned_cols=187 Identities=28% Similarity=0.502 Sum_probs=153.1
Q ss_pred EEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCcc
Q 006897 58 TVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQ 137 (627)
Q Consensus 58 ~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~ 137 (627)
+++||+++|+ ++.+|+|+||++++||+++|+||||||||||+++|+|+++|++ |+|.++|++
T Consensus 1 ~~~~l~~~~~---------------~~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~---G~i~~~g~~ 62 (213)
T cd03235 1 EVEDLTVSYG---------------GHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTS---GSIRVFGKP 62 (213)
T ss_pred CcccceeEEC---------------CEEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCC---CEEEECCcc
Confidence 3689999993 2459999999999999999999999999999999999998864 999999987
Q ss_pred CCChhhhcccEEEEccCCCCC--CCCCHHHHHHHHHHhcCC--CCCHHHHHHHHHHHHHHcCCcccc----CCcCCcccc
Q 006897 138 IKKPAQLRKICGFVAQEDNLL--PLLTVKETLMFSANFRLK--GMSHKEKEDRVESLMDELGLTHVA----GSFVGDEEN 209 (627)
Q Consensus 138 ~~~~~~~r~~ig~v~Q~~~l~--~~lTV~e~l~~~~~~~~~--~~~~~~~~~~v~~~l~~lgL~~~~----~~~~gGe~q 209 (627)
+. ..++.++|++|++.+. ..+||+||+.++...... +...++.+++++++++.+|+++.. .+++|||+|
T Consensus 63 ~~---~~~~~i~~v~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~q 139 (213)
T cd03235 63 LE---KERKRIGYVPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQ 139 (213)
T ss_pred HH---HHHhheEEeccccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHH
Confidence 42 4567899999998763 337999999886421110 012234456789999999997644 456699999
Q ss_pred C------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeC
Q 006897 210 R------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYG 268 (627)
Q Consensus 210 r------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G 268 (627)
| ||+|||+.++..+.+.|+++++ .|+|||++|||++ ++.++||++++|++| +++.|
T Consensus 140 rv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tvi~~sH~~~-~~~~~~d~i~~l~~~-~~~~g 213 (213)
T cd03235 140 RVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRR-EGMTILVVTHDLG-LVLEYFDRVLLLNRT-VVASG 213 (213)
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCHH-HHHHhcCEEEEEcCc-EeecC
Confidence 8 9999999999999999999976 5899999999998 588899999999886 55544
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >PRK14248 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-32 Score=281.83 Aligned_cols=200 Identities=22% Similarity=0.318 Sum_probs=162.5
Q ss_pred ceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC--CCCCccceEE
Q 006897 55 CKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVR--DQDFDPRSIT 132 (627)
Q Consensus 55 ~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~--~~~~~~G~i~ 132 (627)
.+|+++|++++|+ ++.+|+|+||++++||+++|+||||||||||+|+|+|+.+ |...+.|+|.
T Consensus 20 ~~l~~~~l~~~~~---------------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~ 84 (268)
T PRK14248 20 HILEVKDLSIYYG---------------EKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEIL 84 (268)
T ss_pred ceEEEEEEEEEeC---------------CceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEE
Confidence 3799999999993 2459999999999999999999999999999999999864 2111349999
Q ss_pred ECCccCCC----hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCc----c----cc
Q 006897 133 VNCHQIKK----PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLT----H----VA 200 (627)
Q Consensus 133 i~g~~~~~----~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~----~~ 200 (627)
++|+++.. ....++.++|++|++.+++. |+.||+.+...... .......++++.++++.+++. + ..
T Consensus 85 ~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~ 162 (268)
T PRK14248 85 YEGLNILDSNINVVNLRREIGMVFQKPNPFPK-SIYNNITHALKYAG-ERRKSVLDEIVEESLTKAALWDEVKDRLHSSA 162 (268)
T ss_pred ECCEEcccccccHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHcCCCcchHHHHhcCc
Confidence 99988632 12456789999999988885 99999998643221 112233456678889888874 2 23
Q ss_pred CCcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCC
Q 006897 201 GSFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRG 262 (627)
Q Consensus 201 ~~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G 262 (627)
..++|||+|| ||+|||+.++..+.+.|+++++ ++|||++|||++ ++.++|||+++|++|
T Consensus 163 ~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~--~~tiii~tH~~~-~~~~~~d~v~~l~~G 239 (268)
T PRK14248 163 LSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKE--EYSIIIVTHNMQ-QALRVSDRTAFFLNG 239 (268)
T ss_pred ccCCHHHHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc--CCEEEEEEeCHH-HHHHhCCEEEEEECC
Confidence 4567999998 9999999999999999999953 589999999998 488899999999999
Q ss_pred eEEeeCCHHHHH
Q 006897 263 SVVHYGSLELLE 274 (627)
Q Consensus 263 ~iv~~G~~~~~~ 274 (627)
++++.|+++++.
T Consensus 240 ~i~~~~~~~~~~ 251 (268)
T PRK14248 240 DLVEYDQTEQIF 251 (268)
T ss_pred EEEEeCCHHHHH
Confidence 999999987763
|
|
| >PRK14262 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-32 Score=279.71 Aligned_cols=200 Identities=22% Similarity=0.340 Sum_probs=164.4
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC--CCccceEEE
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQ--DFDPRSITV 133 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~--~~~~G~i~i 133 (627)
+|+++|+++.|+ ++.+|+|+||++++||+++|+||||||||||+++|+|+++|. ..+.|+|.+
T Consensus 3 ~l~~~~l~~~~~---------------~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i 67 (250)
T PRK14262 3 IIEIENFSAYYG---------------EKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYF 67 (250)
T ss_pred eEEEEeeEEEeC---------------CceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEE
Confidence 689999999993 245899999999999999999999999999999999998741 113499999
Q ss_pred CCccCCC----hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCcc--------ccC
Q 006897 134 NCHQIKK----PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTH--------VAG 201 (627)
Q Consensus 134 ~g~~~~~----~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~--------~~~ 201 (627)
+|+++.. ....++.++|++|++.+++ .|++||+.+...... ....++.+++++++++.+|+.+ ...
T Consensus 68 ~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~ 145 (250)
T PRK14262 68 KGQDIYDPQLDVTEYRKKVGMVFQKPTPFP-MSIYDNVAFGPRIHG-VKSKHKLDRIVEESLKKAALWDEVKSELNKPGT 145 (250)
T ss_pred CCEEcccchhhHHHhhhhEEEEecCCccCc-ccHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHcCCCchhHHHHhCChh
Confidence 9987532 1245678999999998887 799999998753321 1123345567888999998853 223
Q ss_pred CcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCe
Q 006897 202 SFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGS 263 (627)
Q Consensus 202 ~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~ 263 (627)
.++|||+|| ||+|||+.++..+.+.|+++++ ++|||++||+++ ++.++||++++|++|+
T Consensus 146 ~LS~Gq~qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tili~sH~~~-~~~~~~d~i~~l~~G~ 222 (250)
T PRK14262 146 RLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSE--NYTIVIVTHNIG-QAIRIADYIAFMYRGE 222 (250)
T ss_pred hcCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhc--CcEEEEEeCCHH-HHHHhCCEEEEEECCE
Confidence 566999998 9999999999999999999863 689999999998 4889999999999999
Q ss_pred EEeeCCHHHHHH
Q 006897 264 VVHYGSLELLEE 275 (627)
Q Consensus 264 iv~~G~~~~~~~ 275 (627)
++..|+++++.+
T Consensus 223 i~~~g~~~~~~~ 234 (250)
T PRK14262 223 LIEYGPTREIVE 234 (250)
T ss_pred EEEecCHHHHHh
Confidence 999999887643
|
|
| >PRK14254 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-32 Score=282.90 Aligned_cols=201 Identities=23% Similarity=0.373 Sum_probs=164.5
Q ss_pred CCcceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCC--Cccc
Q 006897 52 KTTCKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQD--FDPR 129 (627)
Q Consensus 52 ~~~~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~--~~~G 129 (627)
.+..+|+++||+++|. ++.+|+|+||+|++||+++|+||||||||||+++|+|++++.. .+.|
T Consensus 35 ~~~~~l~i~~l~~~~~---------------~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G 99 (285)
T PRK14254 35 SGETVIEARDLNVFYG---------------DEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEG 99 (285)
T ss_pred CCCceEEEEEEEEEEC---------------CEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCce
Confidence 4456899999999993 2459999999999999999999999999999999999987310 1349
Q ss_pred eEEECCccCCC----hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCcc-------
Q 006897 130 SITVNCHQIKK----PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTH------- 198 (627)
Q Consensus 130 ~i~i~g~~~~~----~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~------- 198 (627)
+|.++|+++.. ...+++.++|++|++.+++. ||.||+.+....+ +.+. +.+++++++++.+||.+
T Consensus 100 ~I~i~G~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~--~~~~-~~~~~~~~~l~~~~l~~~i~~~~~ 175 (285)
T PRK14254 100 ELTFRGKNVYDADVDPVALRRRIGMVFQKPNPFPK-SIYDNVAYGLKIQ--GYDG-DIDERVEESLRRAALWDEVKDQLD 175 (285)
T ss_pred EEEECCEEccccccchHhhhccEEEEecCCccCcC-CHHHHHHHHHHHc--CCcH-HHHHHHHHHHHHcCCCchhHHHHh
Confidence 99999988532 23567789999999988885 9999999875432 2222 44567899999999842
Q ss_pred -ccCCcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhhe-e
Q 006897 199 -VAGSFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFL-I 258 (627)
Q Consensus 199 -~~~~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~-v 258 (627)
....++|||+|| ||+|||+.++..+.+.|+++++ +.|||++||+++ ++.++|||++ +
T Consensus 176 ~~~~~LSgGe~qrv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~--~~tiii~tH~~~-~i~~~~dri~v~ 252 (285)
T PRK14254 176 SSGLDLSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAE--EYTVVIVTHNMQ-QAARISDKTAVF 252 (285)
T ss_pred CCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc--CCEEEEEeCCHH-HHHhhcCEEEEE
Confidence 234667999998 9999999999999999999975 379999999998 4888999975 6
Q ss_pred ecCCeEEeeCCHHHHH
Q 006897 259 LSRGSVVHYGSLELLE 274 (627)
Q Consensus 259 L~~G~iv~~G~~~~~~ 274 (627)
|++|++++.|+++++.
T Consensus 253 l~~G~i~~~g~~~~~~ 268 (285)
T PRK14254 253 LTGGELVEFDDTDKIF 268 (285)
T ss_pred eeCCEEEEeCCHHHHH
Confidence 7999999999987663
|
|
| >TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-33 Score=277.27 Aligned_cols=188 Identities=24% Similarity=0.402 Sum_probs=160.3
Q ss_pred EEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCc
Q 006897 57 VTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCH 136 (627)
Q Consensus 57 l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~ 136 (627)
|+++|++++|+ ++.+|+|+||++++||+++|+||||||||||+++|+|+++|+. |+|.++|+
T Consensus 1 l~l~~v~~~~~---------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~~~ 62 (223)
T TIGR03740 1 LETKNLSKRFG---------------KQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTS---GEIIFDGH 62 (223)
T ss_pred CEEEeEEEEEC---------------CEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCc---eEEEECCE
Confidence 47899999993 2469999999999999999999999999999999999998864 99999998
Q ss_pred cCCChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccCC----cCCccccC--
Q 006897 137 QIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAGS----FVGDEENR-- 210 (627)
Q Consensus 137 ~~~~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~----~~gGe~qr-- 210 (627)
++.. .. ++.++|++|++.+++.+|++||+.+....+ +.. ++++.++++.+||++..++ ++|||+||
T Consensus 63 ~~~~-~~-~~~~~~~~q~~~~~~~~t~~~~~~~~~~~~--~~~----~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~ 134 (223)
T TIGR03740 63 PWTR-KD-LHKIGSLIESPPLYENLTARENLKVHTTLL--GLP----DSRIDEVLNIVDLTNTGKKKAKQFSLGMKQRLG 134 (223)
T ss_pred eccc-cc-cccEEEEcCCCCccccCCHHHHHHHHHHHc--CCC----HHHHHHHHHHcCCcHHHhhhHhhCCHHHHHHHH
Confidence 7532 22 357999999999898899999998865432 111 3467889999999876544 56999998
Q ss_pred ----------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeCCHHH
Q 006897 211 ----------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGSLEL 272 (627)
Q Consensus 211 ----------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~ 272 (627)
||+|||+.++..+.+.|+++++ .|+|||++|||++ ++.++||++++|++|++++.|++.+
T Consensus 135 laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~-~~~tiii~sH~~~-~~~~~~d~i~~l~~g~i~~~~~~~~ 210 (223)
T TIGR03740 135 IAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPE-QGITVILSSHILS-EVQQLADHIGIISEGVLGYQGKINK 210 (223)
T ss_pred HHHHHhcCCCEEEECCCccCCCHHHHHHHHHHHHHHHH-CCCEEEEEcCCHH-HHHHhcCEEEEEeCCEEEEecChhh
Confidence 9999999999999999999975 4899999999998 4788999999999999999998753
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. |
| >PRK14272 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-32 Score=279.46 Aligned_cols=200 Identities=19% Similarity=0.284 Sum_probs=163.9
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCC--CccceEEE
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQD--FDPRSITV 133 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~--~~~G~i~i 133 (627)
+|+++||+++|+ ++.+|+|+||+|++||+++|+||||||||||+|+|+|+++|.. ..+|+|.+
T Consensus 4 ~l~~~~l~~~~~---------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~ 68 (252)
T PRK14272 4 LLSAQDVNIYYG---------------DKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILL 68 (252)
T ss_pred EEEEeeeEEEEC---------------CEEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEE
Confidence 689999999993 2469999999999999999999999999999999999987641 12499999
Q ss_pred CCccCCC----hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCc--------cccC
Q 006897 134 NCHQIKK----PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLT--------HVAG 201 (627)
Q Consensus 134 ~g~~~~~----~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~--------~~~~ 201 (627)
+|+++.. ...+++.++|++|++.+++.+|+.||+.++..... ...+++..+++.++++.+++. ....
T Consensus 69 ~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~ 147 (252)
T PRK14272 69 DGQDIYGPRVDPVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAG-IRDRDHLMEVAERSLRGAALWDEVKDRLKTPAT 147 (252)
T ss_pred CCEEcccCccCHHHhhceeEEEeccCccCcCCCHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcc
Confidence 9988632 23456789999999999998999999987653221 112334456677777777653 2234
Q ss_pred CcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCe
Q 006897 202 SFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGS 263 (627)
Q Consensus 202 ~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~ 263 (627)
.++|||+|| ||+|||+.++..+.+.|++++ + ++|||++||+++ ++.++|||+++|++|+
T Consensus 148 ~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~-~~tiii~sH~~~-~~~~~~d~i~~l~~G~ 224 (252)
T PRK14272 148 GLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLK-K-VTTIIIVTHNMH-QAARVSDTTSFFLVGD 224 (252)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-c-CCeEEEEeCCHH-HHHHhCCEEEEEECCE
Confidence 567999998 999999999999999999985 3 689999999998 4888999999999999
Q ss_pred EEeeCCHHHHH
Q 006897 264 VVHYGSLELLE 274 (627)
Q Consensus 264 iv~~G~~~~~~ 274 (627)
+++.|+++++.
T Consensus 225 i~~~~~~~~~~ 235 (252)
T PRK14272 225 LVEHGPTDQLF 235 (252)
T ss_pred EEEeCCHHHHH
Confidence 99999988764
|
|
| >PRK14275 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-32 Score=283.11 Aligned_cols=200 Identities=22% Similarity=0.319 Sum_probs=163.2
Q ss_pred cceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC--CCCCccceE
Q 006897 54 TCKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVR--DQDFDPRSI 131 (627)
Q Consensus 54 ~~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~--~~~~~~G~i 131 (627)
..+|+++||+++|+ .+.+|+|+||+|++||+++|+||||||||||+++|+|+.+ |...+.|+|
T Consensus 37 ~~~l~~~~l~~~~~---------------~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I 101 (286)
T PRK14275 37 KPHVVAKNFSIYYG---------------EFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGAL 101 (286)
T ss_pred ceEEEEeeeEEEEC---------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEE
Confidence 45799999999993 2359999999999999999999999999999999999864 310124999
Q ss_pred EECCccCCC----hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHHHcCCc----c----
Q 006897 132 TVNCHQIKK----PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGM-SHKEKEDRVESLMDELGLT----H---- 198 (627)
Q Consensus 132 ~i~g~~~~~----~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~-~~~~~~~~v~~~l~~lgL~----~---- 198 (627)
.++|+++.. ...+++.++|++|++.+++. ||.||+.++...+ +. +....++++.++++.+|+. +
T Consensus 102 ~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~ 178 (286)
T PRK14275 102 MFDGEDIYGKFTDEVLLRKKIGMVFQKPNPFPK-SIFDNIAYGPRLH--GINDKKQLEEIVEKSLRKAALWDEVSDRLDK 178 (286)
T ss_pred EECCEEhhhcccchHHhhhcEEEECCCCCCCcc-CHHHHHHhHHHhc--CCCcHHHHHHHHHHHHHHhCCccchhhHhhC
Confidence 999987532 12457789999999988875 9999999875332 22 2334456788889988873 2
Q ss_pred ccCCcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeec
Q 006897 199 VAGSFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILS 260 (627)
Q Consensus 199 ~~~~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~ 260 (627)
....++|||+|| ||+|||+.++..+.+.|+++++ ++|||++|||++ ++.++|||+++|+
T Consensus 179 ~~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~--~~tvIivsH~~~-~~~~~~d~i~~L~ 255 (286)
T PRK14275 179 NALGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRG--SYTIMIVTHNMQ-QASRVSDYTMFFY 255 (286)
T ss_pred ChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc--CCeEEEEeCCHH-HHHHhCCEEEEEE
Confidence 234567999998 9999999999999999999863 589999999998 4888999999999
Q ss_pred CCeEEeeCCHHHHH
Q 006897 261 RGSVVHYGSLELLE 274 (627)
Q Consensus 261 ~G~iv~~G~~~~~~ 274 (627)
+|+++..|+++++.
T Consensus 256 ~G~i~~~g~~~~~~ 269 (286)
T PRK14275 256 EGVLVEHAPTAQLF 269 (286)
T ss_pred CCEEEEeCCHHHHH
Confidence 99999999988764
|
|
| >PRK14244 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-32 Score=280.21 Aligned_cols=199 Identities=20% Similarity=0.318 Sum_probs=162.4
Q ss_pred EEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC--CCCCccceEEEC
Q 006897 57 VTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVR--DQDFDPRSITVN 134 (627)
Q Consensus 57 l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~--~~~~~~G~i~i~ 134 (627)
-+++||+++|+ ++.+|+|+||++++||+++|+||||||||||+++|+|+.+ |...+.|+|.++
T Consensus 6 ~~~~~l~~~~~---------------~~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~ 70 (251)
T PRK14244 6 ASVKNLNLWYG---------------SKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDID 70 (251)
T ss_pred EEeeeEEEEEC---------------CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEEC
Confidence 47899999993 2469999999999999999999999999999999999986 221134999999
Q ss_pred CccCCC----hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCcc--------ccCC
Q 006897 135 CHQIKK----PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTH--------VAGS 202 (627)
Q Consensus 135 g~~~~~----~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~--------~~~~ 202 (627)
|+++.. ...+++.++|++|++.+++. |+.||+.+....+......++.++++.++++.+||.+ ....
T Consensus 71 g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~ 149 (251)
T PRK14244 71 GIDVYSVDTNVVLLRAKVGMVFQKPNPFPK-SIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFE 149 (251)
T ss_pred CEehHhcccchHHHhhhEEEEecCcccccC-CHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhh
Confidence 987532 12457789999999988886 9999999864332111123345567889999999864 1245
Q ss_pred cCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeE
Q 006897 203 FVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSV 264 (627)
Q Consensus 203 ~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~i 264 (627)
++|||+|| ||+|||+.++..+.+.|+++. + |+|||++||+++ ++.++||++++|++|++
T Consensus 150 LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~-~~tiiiisH~~~-~~~~~~d~i~~l~~G~i 226 (251)
T PRK14244 150 LSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELK-K-NFTIIVVTHSMK-QAKKVSDRVAFFQSGRI 226 (251)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-c-CCeEEEEeCCHH-HHHhhcCEEEEEECCEE
Confidence 67999998 999999999999999999985 3 799999999998 58889999999999999
Q ss_pred EeeCCHHHHH
Q 006897 265 VHYGSLELLE 274 (627)
Q Consensus 265 v~~G~~~~~~ 274 (627)
++.|+++++.
T Consensus 227 ~~~~~~~~~~ 236 (251)
T PRK14244 227 VEYNTTQEIF 236 (251)
T ss_pred EEeCCHHHHh
Confidence 9999987663
|
|
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-33 Score=310.10 Aligned_cols=200 Identities=16% Similarity=0.259 Sum_probs=168.0
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
+|+++||+++|+ ++.+|+||||++++||+++|+||||||||||+|+|+|+++|+ .++|+|.++|
T Consensus 5 ~l~~~nl~~~~~---------------~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~-~~~G~i~~~g 68 (506)
T PRK13549 5 LLEMKNITKTFG---------------GVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHG-TYEGEIIFEG 68 (506)
T ss_pred eEEEeeeEEEeC---------------CeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCC-CCCeEEEECC
Confidence 799999999993 246999999999999999999999999999999999999862 1249999999
Q ss_pred ccCCCh--h-hhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCC-CCHHHHHHHHHHHHHHcCCccccC----CcCCcc
Q 006897 136 HQIKKP--A-QLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKG-MSHKEKEDRVESLMDELGLTHVAG----SFVGDE 207 (627)
Q Consensus 136 ~~~~~~--~-~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~-~~~~~~~~~v~~~l~~lgL~~~~~----~~~gGe 207 (627)
+++... . ..++.+|||+|++.+++.+||+||+.++...+..+ .+.++..++++++++.+||++..+ +++|||
T Consensus 69 ~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq 148 (506)
T PRK13549 69 EELQASNIRDTERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGNLGLGQ 148 (506)
T ss_pred EECCCCCHHHHHHCCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHH
Confidence 886321 1 23567999999998999999999999875322111 233455677899999999976554 456999
Q ss_pred ccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeCC
Q 006897 208 ENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGS 269 (627)
Q Consensus 208 ~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~ 269 (627)
||| ||+|||+.++..+.++|+++++ .|+|||++|||++ ++.++||++++|++|++++.|+
T Consensus 149 kqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~~~tvi~~tH~~~-~~~~~~d~v~~l~~G~i~~~~~ 226 (506)
T PRK13549 149 QQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKA-HGIACIYISHKLN-EVKAISDTICVIRDGRHIGTRP 226 (506)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCcHH-HHHHhcCEEEEEECCEEeeecc
Confidence 999 9999999999999999999975 5899999999998 4888999999999999999998
Q ss_pred HHHH
Q 006897 270 LELL 273 (627)
Q Consensus 270 ~~~~ 273 (627)
++++
T Consensus 227 ~~~~ 230 (506)
T PRK13549 227 AAGM 230 (506)
T ss_pred cccC
Confidence 7765
|
|
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-33 Score=309.59 Aligned_cols=198 Identities=18% Similarity=0.324 Sum_probs=167.8
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
+|+++||+++|+ ++.+|+|+||++++||++||+||||||||||+|+|+|+++|++ |+|.++|
T Consensus 4 ~i~~~~l~~~~~---------------~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~---G~i~~~g 65 (501)
T PRK10762 4 LLQLKGIDKAFP---------------GVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDA---GSILYLG 65 (501)
T ss_pred eEEEeeeEEEeC---------------CeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCC---cEEEECC
Confidence 699999999993 2469999999999999999999999999999999999999864 9999999
Q ss_pred ccCCC--hh-hhcccEEEEccCCCCCCCCCHHHHHHHHHHhcC--CCCCHHHHHHHHHHHHHHcCCccccC----CcCCc
Q 006897 136 HQIKK--PA-QLRKICGFVAQEDNLLPLLTVKETLMFSANFRL--KGMSHKEKEDRVESLMDELGLTHVAG----SFVGD 206 (627)
Q Consensus 136 ~~~~~--~~-~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~--~~~~~~~~~~~v~~~l~~lgL~~~~~----~~~gG 206 (627)
+++.. .. ..++.+||++|++.+++.+||+||+.++..... ...+.++.++++.++++.+||.+..+ +++||
T Consensus 66 ~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG 145 (501)
T PRK10762 66 KEVTFNGPKSSQEAGIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIG 145 (501)
T ss_pred EECCCCCHHHHHhCCEEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHH
Confidence 88632 12 235679999999999999999999998643211 11233445677899999999987654 45699
Q ss_pred cccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeC
Q 006897 207 EENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYG 268 (627)
Q Consensus 207 e~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G 268 (627)
|+|| ||+|||+.++..+.++|+++++ .|+|||++|||++ ++.++||++++|++|+++..|
T Consensus 146 ~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~~~tvii~sHd~~-~~~~~~d~i~~l~~G~i~~~~ 223 (501)
T PRK10762 146 EQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKS-QGRGIVYISHRLK-EIFEICDDVTVFRDGQFIAER 223 (501)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCHH-HHHHhCCEEEEEeCCEEEEec
Confidence 9999 9999999999999999999975 4899999999998 588999999999999999999
Q ss_pred CHHHH
Q 006897 269 SLELL 273 (627)
Q Consensus 269 ~~~~~ 273 (627)
+++++
T Consensus 224 ~~~~~ 228 (501)
T PRK10762 224 EVADL 228 (501)
T ss_pred CcCcC
Confidence 87654
|
|
| >PRK14261 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-32 Score=278.50 Aligned_cols=199 Identities=22% Similarity=0.284 Sum_probs=163.8
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC--CCccceEEE
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQ--DFDPRSITV 133 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~--~~~~G~i~i 133 (627)
+|+++|++++|+ ++.+|+|+||++++||+++|+||||||||||+++|+|+.++. ..+.|+|.+
T Consensus 6 ~i~~~~l~~~~~---------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~ 70 (253)
T PRK14261 6 ILSTKNLNLWYG---------------EKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILY 70 (253)
T ss_pred eEEEeeeEEEEC---------------CeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEE
Confidence 799999999993 245999999999999999999999999999999999997632 112499999
Q ss_pred CCccCCC----hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCcc--------ccC
Q 006897 134 NCHQIKK----PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTH--------VAG 201 (627)
Q Consensus 134 ~g~~~~~----~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~--------~~~ 201 (627)
+|+++.. ....++.++|++|++.+++. ||+||+.+....+. .....+.++++.++++.+++.+ ...
T Consensus 71 ~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~ 148 (253)
T PRK14261 71 NGENIMDSGADVVALRRKIGMVFQRPNPFPK-SIYENVAYGPRIHG-EKNKKTLDTIVEKSLKGAALWDEVKDRLHDSAL 148 (253)
T ss_pred CCEEccccccchhhhhceEEEEecCCccCcc-cHHHHHHhhHHhcC-CCCHHHHHHHHHHHHHHhcCchhhHHHhhcChh
Confidence 9988642 23456789999999988885 99999998754321 1123344567888899888732 234
Q ss_pred CcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCe
Q 006897 202 SFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGS 263 (627)
Q Consensus 202 ~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~ 263 (627)
.++|||+|| ||+|||+.++..+.+.|+++++ ++|||++||+++ ++.++||++++|++|+
T Consensus 149 ~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~--~~tvii~sh~~~-~~~~~~d~v~~l~~G~ 225 (253)
T PRK14261 149 SLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKK--EYTVIIVTHNMQ-QAARVSDYTGFMYLGK 225 (253)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhh--CceEEEEEcCHH-HHHhhCCEEEEEECCE
Confidence 567999998 9999999999999999999964 589999999998 4788999999999999
Q ss_pred EEeeCCHHHHH
Q 006897 264 VVHYGSLELLE 274 (627)
Q Consensus 264 iv~~G~~~~~~ 274 (627)
++..|+++++.
T Consensus 226 i~~~g~~~~~~ 236 (253)
T PRK14261 226 LIEFDKTTQIF 236 (253)
T ss_pred EEEcCCHHHHH
Confidence 99999987764
|
|
| >PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-32 Score=279.35 Aligned_cols=199 Identities=22% Similarity=0.324 Sum_probs=164.8
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
+|+++||++.|+ ++.+|+|+||++++||+++|+||||||||||+|+|+|+++|+. |+|.++|
T Consensus 6 ~l~~~~l~~~~~---------------~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~---G~i~~~g 67 (258)
T PRK11701 6 LLSVRGLTKLYG---------------PRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDA---GEVHYRM 67 (258)
T ss_pred eEEEeeeEEEcC---------------CceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---CEEEECC
Confidence 799999999993 2359999999999999999999999999999999999999864 9999999
Q ss_pred cc-----CCC--hhh----hcccEEEEccCC--CCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCcc-cc-
Q 006897 136 HQ-----IKK--PAQ----LRKICGFVAQED--NLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTH-VA- 200 (627)
Q Consensus 136 ~~-----~~~--~~~----~r~~ig~v~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~- 200 (627)
++ +.. ... .++.++|++|++ .+++.+|+.||+.+..... ......+.++++.++++.+++.+ ..
T Consensus 68 ~~~~~~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~ 146 (258)
T PRK11701 68 RDGQLRDLYALSEAERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAV-GARHYGDIRATAGDWLERVEIDAARID 146 (258)
T ss_pred ccccccccccCCHHHHHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHh-ccCcHHHHHHHHHHHHHHcCCChhHHh
Confidence 87 532 112 245799999997 3677789999998753211 11123345667889999999963 33
Q ss_pred ---CCcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheee
Q 006897 201 ---GSFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLIL 259 (627)
Q Consensus 201 ---~~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL 259 (627)
..++|||+|| ||+|||+.++..+.+.|++++++.|.|||++||+++ .+.++||++++|
T Consensus 147 ~~~~~LS~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~-~~~~~~d~i~~l 225 (258)
T PRK11701 147 DLPTTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLA-VARLLAHRLLVM 225 (258)
T ss_pred CCCccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHhcCEEEEE
Confidence 4566999998 999999999999999999997766899999999998 477899999999
Q ss_pred cCCeEEeeCCHHHHH
Q 006897 260 SRGSVVHYGSLELLE 274 (627)
Q Consensus 260 ~~G~iv~~G~~~~~~ 274 (627)
++|++++.|+++++.
T Consensus 226 ~~g~i~~~~~~~~~~ 240 (258)
T PRK11701 226 KQGRVVESGLTDQVL 240 (258)
T ss_pred ECCEEEEeCCHHHHh
Confidence 999999999987763
|
|
| >PRK14251 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-32 Score=278.22 Aligned_cols=198 Identities=22% Similarity=0.360 Sum_probs=162.7
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC--CCCCccceEEE
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVR--DQDFDPRSITV 133 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~--~~~~~~G~i~i 133 (627)
+|+++|++++|+ .+.+|+|+||+|++||+++|+||||||||||+|+|+|+++ |.....|+|.+
T Consensus 4 ~l~~~~l~~~~~---------------~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i 68 (251)
T PRK14251 4 IISAKDVHLSYG---------------NYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKF 68 (251)
T ss_pred eEEEEeeEEEEC---------------CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEE
Confidence 689999999993 2459999999999999999999999999999999999986 21113499999
Q ss_pred CCccCCC----hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHHHcCCc----c----cc
Q 006897 134 NCHQIKK----PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGM-SHKEKEDRVESLMDELGLT----H----VA 200 (627)
Q Consensus 134 ~g~~~~~----~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~-~~~~~~~~v~~~l~~lgL~----~----~~ 200 (627)
+|+++.. ....++.++|++|++.+++ .||+||+.++.... +. .++..+++++++++.+++. + ..
T Consensus 69 ~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~ 145 (251)
T PRK14251 69 EGQNIYGSKMDLVELRKEVGMVFQQPTPFP-FSVYDNVAYGLKIA--GVKDKELIDQRVEESLKQAAIWKETKDNLDRNA 145 (251)
T ss_pred CCEEcccccchHHHhhccEEEEecCCccCC-CcHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHcCCCcchHHHhccCh
Confidence 9988532 1345778999999998886 69999998865322 21 2333456788899999983 2 23
Q ss_pred CCcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCC
Q 006897 201 GSFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRG 262 (627)
Q Consensus 201 ~~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G 262 (627)
..++|||+|| |++|||+.++..+.+.|+++++ +.|||++||+++ ++.++||++++|++|
T Consensus 146 ~~LS~Gq~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tiiiisH~~~-~~~~~~d~i~~l~~G 222 (251)
T PRK14251 146 QAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKH--QYTFIMVTHNLQ-QAGRISDQTAFLMNG 222 (251)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHc--CCeEEEEECCHH-HHHhhcCEEEEEECC
Confidence 4567999998 9999999999999999999853 689999999998 488999999999999
Q ss_pred eEEeeCCHHHHH
Q 006897 263 SVVHYGSLELLE 274 (627)
Q Consensus 263 ~iv~~G~~~~~~ 274 (627)
+++..|+++++.
T Consensus 223 ~i~~~~~~~~~~ 234 (251)
T PRK14251 223 DLIEAGPTEEMF 234 (251)
T ss_pred EEEEeCCHHHHH
Confidence 999999987763
|
|
| >PRK14253 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-32 Score=278.13 Aligned_cols=197 Identities=24% Similarity=0.349 Sum_probs=163.5
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCC--CccceEEE
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQD--FDPRSITV 133 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~--~~~G~i~i 133 (627)
+|+++|+++.|+ ++.+|+|+||++++||+++|+||||||||||+++|+|+.+|.. .+.|+|.+
T Consensus 3 ~l~~~~l~~~~~---------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~ 67 (249)
T PRK14253 3 KFNIENLDLFYG---------------ENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTM 67 (249)
T ss_pred eEEEeccEEEEC---------------CeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEE
Confidence 689999999993 2459999999999999999999999999999999999988631 12499999
Q ss_pred CCccCC---ChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHHHcCCcc--------ccC
Q 006897 134 NCHQIK---KPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGM-SHKEKEDRVESLMDELGLTH--------VAG 201 (627)
Q Consensus 134 ~g~~~~---~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~-~~~~~~~~v~~~l~~lgL~~--------~~~ 201 (627)
+|.++. +....++.++|++|++.+++ .||.||+.++.... +. .++..++++.++++.+|+.+ ...
T Consensus 68 ~g~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 144 (249)
T PRK14253 68 DGEDIYGNIDVADLRIKVGMVFQKPNPFP-MSIYENVAYGLRAQ--GIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAF 144 (249)
T ss_pred CCEEcccccchHHHHhheeEEecCCCcCc-ccHHHHHHhHHHhc--CCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcc
Confidence 998753 12356778999999998887 79999999864322 11 23344567888888888742 223
Q ss_pred CcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCe
Q 006897 202 SFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGS 263 (627)
Q Consensus 202 ~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~ 263 (627)
.++|||+|| ||+|||+.++..+.+.|+++++ ++|||++||+++ ++.++||++++|++|+
T Consensus 145 ~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tii~~sh~~~-~~~~~~d~i~~l~~G~ 221 (249)
T PRK14253 145 GLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKK--NYTIVIVTHSMQ-QARRISDRTAFFLMGE 221 (249)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc--CCeEEEEecCHH-HHHHhCCEEEEEECCE
Confidence 567999998 9999999999999999999964 589999999998 5889999999999999
Q ss_pred EEeeCCHHHH
Q 006897 264 VVHYGSLELL 273 (627)
Q Consensus 264 iv~~G~~~~~ 273 (627)
+++.|+++++
T Consensus 222 i~~~g~~~~~ 231 (249)
T PRK14253 222 LVEHDDTQVI 231 (249)
T ss_pred EEEeCCHHHH
Confidence 9999998765
|
|
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-32 Score=313.09 Aligned_cols=204 Identities=22% Similarity=0.342 Sum_probs=170.1
Q ss_pred ceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEEC
Q 006897 55 CKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVN 134 (627)
Q Consensus 55 ~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~ 134 (627)
.+|+++||++.|... .+..++|+||||++++||++||+||||||||||+|+|+|+++|++ |+|.++
T Consensus 11 ~~l~v~~l~~~y~~~-----------~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~---G~i~~~ 76 (623)
T PRK10261 11 DVLAVENLNIAFMQE-----------QQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAG---GLVQCD 76 (623)
T ss_pred ceEEEeceEEEecCC-----------CCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCC---eEEEEC
Confidence 379999999999421 123469999999999999999999999999999999999998864 999998
Q ss_pred CccCC------------Ch---hhhc-ccEEEEccCC--CCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCC
Q 006897 135 CHQIK------------KP---AQLR-KICGFVAQED--NLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGL 196 (627)
Q Consensus 135 g~~~~------------~~---~~~r-~~ig~v~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL 196 (627)
|.++. .. ..+| +.||||+|++ .+++.+||.||+.++...+. +.++++.++++.++|+.+||
T Consensus 77 g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~-~~~~~~~~~~~~~~l~~~gL 155 (623)
T PRK10261 77 KMLLRRRSRQVIELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQ-GASREEAMVEAKRMLDQVRI 155 (623)
T ss_pred CEEeccccccccccccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHCCC
Confidence 86321 11 1233 4799999997 67888999999999865321 33555667889999999999
Q ss_pred cc-------ccCCcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHH
Q 006897 197 TH-------VAGSFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQ 251 (627)
Q Consensus 197 ~~-------~~~~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~ 251 (627)
.+ ...+++|||+|| ||++||+.++.++.++|++++++.|+|||++|||++ ++.+
T Consensus 156 ~~~~~~~~~~~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~-~~~~ 234 (623)
T PRK10261 156 PEAQTILSRYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMG-VVAE 234 (623)
T ss_pred CChhhHHhCCCccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHH
Confidence 52 345677999999 999999999999999999998766899999999998 4889
Q ss_pred HhhhheeecCCeEEeeCCHHHHH
Q 006897 252 YISKFLILSRGSVVHYGSLELLE 274 (627)
Q Consensus 252 ~~D~i~vL~~G~iv~~G~~~~~~ 274 (627)
+||||++|++|++++.|+++++.
T Consensus 235 ~adri~vl~~G~i~~~g~~~~~~ 257 (623)
T PRK10261 235 IADRVLVMYQGEAVETGSVEQIF 257 (623)
T ss_pred hCCEEEEeeCCeecccCCHHHhh
Confidence 99999999999999999987764
|
|
| >cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-32 Score=273.19 Aligned_cols=185 Identities=26% Similarity=0.454 Sum_probs=155.4
Q ss_pred EEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCc
Q 006897 57 VTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCH 136 (627)
Q Consensus 57 l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~ 136 (627)
+.+ ||+++|+ ++.+ |+||++++ |+++|+||||||||||+++|+|+++|++ |+|.++|.
T Consensus 2 ~~~-~l~~~~~---------------~~~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g~ 59 (214)
T cd03297 2 LCV-DIEKRLP---------------DFTL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDG---GTIVLNGT 59 (214)
T ss_pred cee-eeeEecC---------------Ceee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCC---ceEEECCE
Confidence 345 9999994 2334 99999999 9999999999999999999999998864 99999998
Q ss_pred cCCC------hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccC----CcCCc
Q 006897 137 QIKK------PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAG----SFVGD 206 (627)
Q Consensus 137 ~~~~------~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~----~~~gG 206 (627)
++.. ....++.++|++|++.+++.+|++||+.+..... ..+..++++.++++.+|+++..+ .++||
T Consensus 60 ~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~----~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G 135 (214)
T cd03297 60 VLFDSRKKINLPPQQRKIGLVFQQYALFPHLNVRENLAFGLKRK----RNREDRISVDELLDLLGLDHLLNRYPAQLSGG 135 (214)
T ss_pred ecccccchhhhhhHhhcEEEEecCCccCCCCCHHHHHHHHHhhC----CHHHHHHHHHHHHHHcCCHhHhhcCcccCCHH
Confidence 7532 1235678999999999998899999998864321 23344567899999999976443 46699
Q ss_pred cccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeC
Q 006897 207 EENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYG 268 (627)
Q Consensus 207 e~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G 268 (627)
|+|| ||+|||+.+++.+.+.|++++++.|+|||++||+++ ++.++||++++|++|++++.|
T Consensus 136 ~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~g 214 (214)
T cd03297 136 EKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLS-EAEYLADRIVVMEDGRLQYIG 214 (214)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHH-HHHHhcCEEEEEECCEEEecC
Confidence 9998 999999999999999999998766899999999998 488899999999999998765
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14249 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-32 Score=277.35 Aligned_cols=199 Identities=22% Similarity=0.352 Sum_probs=163.9
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCC--CccceEEE
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQD--FDPRSITV 133 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~--~~~G~i~i 133 (627)
.|+++||+++|. ++.+|+|+||+|++||+++|+||||||||||+++|+|+++|.. ...|+|.+
T Consensus 4 ~l~~~~l~~~~~---------------~~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~ 68 (251)
T PRK14249 4 KIKIRGVNFFYH---------------KHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLL 68 (251)
T ss_pred eEEEEEEEEEEC---------------CeeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEE
Confidence 689999999993 2459999999999999999999999999999999999998752 12499999
Q ss_pred CCccCCC----hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCc--------cccC
Q 006897 134 NCHQIKK----PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLT--------HVAG 201 (627)
Q Consensus 134 ~g~~~~~----~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~--------~~~~ 201 (627)
+|+++.. ...+++.++|++|++.+++. |++||+.+....+.. ..+++.+++++++++.+++. ....
T Consensus 69 ~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~ 146 (251)
T PRK14249 69 DNENIYSPNLDVVNLRKRVGMVFQQPNPFPK-SIFDNVAFGPRMLGT-TAQSRLDEVVEKSLRQAALWDEVKDNLHKSGL 146 (251)
T ss_pred CCEEccccccChHHhhceEEEEecCCccCcC-cHHHHHhhHHHhcCC-ChhhHHHHHHHHHHHHhCCchhhhhHhhCCcc
Confidence 9988632 23457889999999998875 999999987543211 12233456678888888864 2234
Q ss_pred CcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCe
Q 006897 202 SFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGS 263 (627)
Q Consensus 202 ~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~ 263 (627)
.++|||+|| ||+|||+.++..+.++|+++. +++|||++||+++ ++.+.||++++|++|+
T Consensus 147 ~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~~~tilivsh~~~-~~~~~~d~i~~l~~G~ 223 (251)
T PRK14249 147 ALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELK--QNYTIAIVTHNMQ-QAARASDWTGFLLTGD 223 (251)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh--cCCEEEEEeCCHH-HHHhhCCEEEEEeCCe
Confidence 567999998 999999999999999999984 3789999999998 4889999999999999
Q ss_pred EEeeCCHHHHH
Q 006897 264 VVHYGSLELLE 274 (627)
Q Consensus 264 iv~~G~~~~~~ 274 (627)
+++.|+++++.
T Consensus 224 i~~~~~~~~~~ 234 (251)
T PRK14249 224 LVEYGRTGEIF 234 (251)
T ss_pred EEEeCCHHHHH
Confidence 99999987763
|
|
| >PRK14255 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-32 Score=276.57 Aligned_cols=200 Identities=22% Similarity=0.331 Sum_probs=162.3
Q ss_pred ceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC--CCCCccceEE
Q 006897 55 CKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVR--DQDFDPRSIT 132 (627)
Q Consensus 55 ~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~--~~~~~~G~i~ 132 (627)
.+|+++||+++|+ .+.+|+|+||++++||+++|+||||||||||+++|+|+.+ |+..+.|+|.
T Consensus 4 ~~l~~~~l~~~~~---------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~ 68 (252)
T PRK14255 4 KIITSSDVHLFYG---------------KFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVS 68 (252)
T ss_pred ceEEEEeEEEEEC---------------CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEE
Confidence 3799999999993 2459999999999999999999999999999999999875 4211249999
Q ss_pred ECCccCCC----hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCc----c----cc
Q 006897 133 VNCHQIKK----PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLT----H----VA 200 (627)
Q Consensus 133 i~g~~~~~----~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~----~~ 200 (627)
++|+++.. ....++.++|++|++.+++ .|++||+.+....+.. ..++..++++.+.++.+++. + ..
T Consensus 69 ~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~ 146 (252)
T PRK14255 69 LRGQNIYAPNEDVVQLRKQVGMVFQQPNPFP-FSIYENVIYGLRLAGV-KDKAVLDEAVETSLKQAAIWDEVKDHLHESA 146 (252)
T ss_pred EcCEEcccccccHHHhcCeEEEEECCCccCC-CcHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHHcCCccchhhHHhcCc
Confidence 99987632 2345678999999998888 6999999986543211 12233345677788888763 2 23
Q ss_pred CCcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCC
Q 006897 201 GSFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRG 262 (627)
Q Consensus 201 ~~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G 262 (627)
..++|||+|| ||+|||+.++..+.+.|+++++ +.|||++||+++ ++.++||++++|++|
T Consensus 147 ~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tii~vsH~~~-~~~~~~d~i~~l~~G 223 (252)
T PRK14255 147 LSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRD--QYTIILVTHSMH-QASRISDKTAFFLTG 223 (252)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHh--CCEEEEEECCHH-HHHHhCCEEEEEECC
Confidence 4567999998 9999999999999999999964 479999999998 488899999999999
Q ss_pred eEEeeCCHHHHH
Q 006897 263 SVVHYGSLELLE 274 (627)
Q Consensus 263 ~iv~~G~~~~~~ 274 (627)
+++..|++.++.
T Consensus 224 ~i~~~~~~~~~~ 235 (252)
T PRK14255 224 NLIEFADTKQMF 235 (252)
T ss_pred EEEEeCCHHHHh
Confidence 999999887663
|
|
| >COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=260.18 Aligned_cols=198 Identities=27% Similarity=0.423 Sum_probs=176.3
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
.|+++|+.++| +...+|++||++.++|+++.|||.|||||||+||||.=+.+|.. |.|.+||
T Consensus 6 ~l~v~dlHK~~---------------G~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~---G~I~v~g 67 (256)
T COG4598 6 ALEVEDLHKRY---------------GEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSA---GSIRVNG 67 (256)
T ss_pred ceehhHHHhhc---------------ccchhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCC---ceEEECC
Confidence 58999999999 45679999999999999999999999999999999999988864 9999999
Q ss_pred ccCC------------C---hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCcccc
Q 006897 136 HQIK------------K---PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVA 200 (627)
Q Consensus 136 ~~~~------------~---~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~ 200 (627)
+.+. + ...+|.+.|+|||+.+++..|||.||+.-+. .+..+.++.+..++++.+|.++|+.+..
T Consensus 68 eei~~k~~~~G~l~~ad~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaP-vhVLg~~k~ea~e~Ae~~L~kVGi~ek~ 146 (256)
T COG4598 68 EEIRLKRDKDGQLKPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAP-VHVLGVSKAEAIERAEKYLAKVGIAEKA 146 (256)
T ss_pred eEEEeeeCCCCCeeeCCHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcc-hHhhcCCHHHHHHHHHHHHHHhCchhhh
Confidence 8762 0 1346778999999999999999999998753 3444668899999999999999998877
Q ss_pred CCcC----CccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhhee
Q 006897 201 GSFV----GDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLI 258 (627)
Q Consensus 201 ~~~~----gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~v 258 (627)
+.++ |||+|| |||+|||...-++++.+++++++ |+|++++||.+.. +.+...++++
T Consensus 147 ~~YP~~LSGGQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeE-grTMv~VTHEM~F-AR~Vss~v~f 224 (256)
T COG4598 147 DAYPAHLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEE-GRTMVVVTHEMGF-ARDVSSHVIF 224 (256)
T ss_pred hcCccccCchHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHh-CCeEEEEeeehhH-HHhhhhheEE
Confidence 7654 999999 99999999999999999999975 9999999999996 7889999999
Q ss_pred ecCCeEEeeCCHHHHH
Q 006897 259 LSRGSVVHYGSLELLE 274 (627)
Q Consensus 259 L~~G~iv~~G~~~~~~ 274 (627)
|++|.|-++|+|+++.
T Consensus 225 Lh~G~iEE~G~P~qvf 240 (256)
T COG4598 225 LHQGKIEEEGPPEQVF 240 (256)
T ss_pred eecceecccCChHHHh
Confidence 9999999999998874
|
|
| >PRK14271 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-32 Score=279.14 Aligned_cols=200 Identities=20% Similarity=0.311 Sum_probs=166.3
Q ss_pred ceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCC--CccceEE
Q 006897 55 CKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQD--FDPRSIT 132 (627)
Q Consensus 55 ~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~--~~~G~i~ 132 (627)
++|+++||+++|+ ++.+|+|+||+|++||+++|+||||||||||+++|+|+++|.. .+.|+|.
T Consensus 20 ~~l~i~nl~~~~~---------------~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~ 84 (276)
T PRK14271 20 PAMAAVNLTLGFA---------------GKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVL 84 (276)
T ss_pred cEEEEeeEEEEEC---------------CEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEE
Confidence 3799999999993 3469999999999999999999999999999999999998620 1349999
Q ss_pred ECCccCCC---hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccc--------cC
Q 006897 133 VNCHQIKK---PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHV--------AG 201 (627)
Q Consensus 133 i~g~~~~~---~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~--------~~ 201 (627)
++|+++.. ...+++.++|++|++.+++ .|++||+.++.... ...+.++.++++.++++.+|+.+. ..
T Consensus 85 ~~g~~i~~~~~~~~~~~~i~~v~q~~~l~~-~tv~eni~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~ 162 (276)
T PRK14271 85 LGGRSIFNYRDVLEFRRRVGMLFQRPNPFP-MSIMDNVLAGVRAH-KLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPF 162 (276)
T ss_pred ECCEEccccchhHHHhhheEEeccCCccCC-ccHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcc
Confidence 99988632 2346778999999998888 79999998864322 112344555677888999998632 34
Q ss_pred CcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCe
Q 006897 202 SFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGS 263 (627)
Q Consensus 202 ~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~ 263 (627)
.++|||+|| ||+|||+.+++.+.+.|+++++ ++|||++||+++ ++.++|||+++|++|+
T Consensus 163 ~LSgGq~qrl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~--~~tiiivsH~~~-~~~~~~dri~~l~~G~ 239 (276)
T PRK14271 163 RLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLAD--RLTVIIVTHNLA-QAARISDRAALFFDGR 239 (276)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc--CCEEEEEeCCHH-HHHHhCCEEEEEECCE
Confidence 567999998 9999999999999999999964 489999999998 5889999999999999
Q ss_pred EEeeCCHHHHH
Q 006897 264 VVHYGSLELLE 274 (627)
Q Consensus 264 iv~~G~~~~~~ 274 (627)
+++.|+++++.
T Consensus 240 i~~~g~~~~~~ 250 (276)
T PRK14271 240 LVEEGPTEQLF 250 (276)
T ss_pred EEEeCCHHHHH
Confidence 99999988764
|
|
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-32 Score=311.67 Aligned_cols=212 Identities=26% Similarity=0.352 Sum_probs=172.4
Q ss_pred cceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEE
Q 006897 54 TCKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITV 133 (627)
Q Consensus 54 ~~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i 133 (627)
..+|+++||++.|+.+... + ......+.+|+||||+|++||++||+||||||||||+|+|+|+++|++ |+|.+
T Consensus 311 ~~~L~~~~l~~~y~~~~~~---~-~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~---G~I~~ 383 (623)
T PRK10261 311 EPILQVRNLVTRFPLRSGL---L-NRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQG---GEIIF 383 (623)
T ss_pred CceEEEeeeEEEEcCCCcc---c-cccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCC---cEEEE
Confidence 3579999999999521000 0 000012469999999999999999999999999999999999999864 99999
Q ss_pred CCccCCC--h---hhhcccEEEEccCC--CCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCc-ccc----C
Q 006897 134 NCHQIKK--P---AQLRKICGFVAQED--NLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLT-HVA----G 201 (627)
Q Consensus 134 ~g~~~~~--~---~~~r~~ig~v~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~----~ 201 (627)
+|+++.. . ..+++.|+||||++ .+++.+||.||+.+....+. ...+++.++++.++|+.+||+ +.. +
T Consensus 384 ~g~~i~~~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~-~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~ 462 (623)
T PRK10261 384 NGQRIDTLSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHG-LLPGKAAAARVAWLLERVGLLPEHAWRYPH 462 (623)
T ss_pred CCEECCcCCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHcCCCHHHhhCCcc
Confidence 9987632 1 23567899999996 58889999999998654321 113445567899999999995 333 4
Q ss_pred CcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCe
Q 006897 202 SFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGS 263 (627)
Q Consensus 202 ~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~ 263 (627)
+++|||||| ||+|||+.++.+++++|++++++.|.|||++|||++ .+.++||||++|++|+
T Consensus 463 ~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~-~v~~~~dri~vl~~G~ 541 (623)
T PRK10261 463 EFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMA-VVERISHRVAVMYLGQ 541 (623)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCE
Confidence 567999999 999999999999999999998767899999999998 4889999999999999
Q ss_pred EEeeCCHHHHH
Q 006897 264 VVHYGSLELLE 274 (627)
Q Consensus 264 iv~~G~~~~~~ 274 (627)
+++.|+++++.
T Consensus 542 iv~~g~~~~i~ 552 (623)
T PRK10261 542 IVEIGPRRAVF 552 (623)
T ss_pred EEEecCHHHHh
Confidence 99999998874
|
|
| >PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-32 Score=277.99 Aligned_cols=198 Identities=19% Similarity=0.290 Sum_probs=162.4
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCC-CccceEEEC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQD-FDPRSITVN 134 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~-~~~G~i~i~ 134 (627)
+|+++||+++|+ +.+|+|+||++++||+++|+||||||||||+++|+|+++|.. .+.|+|.++
T Consensus 4 ~l~~~~l~~~~~----------------~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~ 67 (254)
T PRK10418 4 QIELRNIALQAA----------------QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLD 67 (254)
T ss_pred EEEEeCeEEEec----------------cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEEC
Confidence 689999999992 248999999999999999999999999999999999998721 023999999
Q ss_pred CccCCChhhhcccEEEEccCCC--CCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCcc---c----cCCcCC
Q 006897 135 CHQIKKPAQLRKICGFVAQEDN--LLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTH---V----AGSFVG 205 (627)
Q Consensus 135 g~~~~~~~~~r~~ig~v~Q~~~--l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~---~----~~~~~g 205 (627)
|+++......++.++||+|++. +.+.+|+.+++.+.+... +... .++++.++++.+||.+ . ...++|
T Consensus 68 g~~i~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~--~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~ 143 (254)
T PRK10418 68 GKPVAPCALRGRKIATIMQNPRSAFNPLHTMHTHARETCLAL--GKPA--DDATLTAALEAVGLENAARVLKLYPFEMSG 143 (254)
T ss_pred CeeccccccccceEEEEecCCccccCccccHHHHHHHHHHHc--CCCh--HHHHHHHHHHHcCCCChhhhhhcCCcccCH
Confidence 9886422223467999999974 446679999987754321 1122 2367899999999875 2 245679
Q ss_pred ccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEee
Q 006897 206 DEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHY 267 (627)
Q Consensus 206 Ge~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~ 267 (627)
||+|| ||+|||+.++..+.+.|++++++.|+|||++||+++ ++.++||++++|++|++++.
T Consensus 144 Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~-~~~~~~d~v~~l~~G~i~~~ 222 (254)
T PRK10418 144 GMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMG-VVARLADDVAVMSHGRIVEQ 222 (254)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhCCEEEEEECCEEEEe
Confidence 99998 999999999999999999997766899999999998 47889999999999999999
Q ss_pred CCHHHHH
Q 006897 268 GSLELLE 274 (627)
Q Consensus 268 G~~~~~~ 274 (627)
|+++++.
T Consensus 223 ~~~~~~~ 229 (254)
T PRK10418 223 GDVETLF 229 (254)
T ss_pred cCHHHHh
Confidence 9988764
|
|
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-32 Score=308.16 Aligned_cols=198 Identities=22% Similarity=0.338 Sum_probs=167.3
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
+|+++|++++|+ ++.+|+|+||++++||+++|+||||||||||+|+|+|+++|++ |+|.++|
T Consensus 5 ~l~~~~l~~~~~---------------~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~---G~i~~~g 66 (510)
T PRK09700 5 YISMAGIGKSFG---------------PVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTK---GTITINN 66 (510)
T ss_pred eEEEeeeEEEcC---------------CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCc---cEEEECC
Confidence 799999999993 2459999999999999999999999999999999999998864 9999999
Q ss_pred ccCCC--hh-hhcccEEEEccCCCCCCCCCHHHHHHHHHHhc--CCC---CCHHHHHHHHHHHHHHcCCccccC----Cc
Q 006897 136 HQIKK--PA-QLRKICGFVAQEDNLLPLLTVKETLMFSANFR--LKG---MSHKEKEDRVESLMDELGLTHVAG----SF 203 (627)
Q Consensus 136 ~~~~~--~~-~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~--~~~---~~~~~~~~~v~~~l~~lgL~~~~~----~~ 203 (627)
+++.. .. ..++.+|||+|++.+++.+||+||+.++.... ..+ .+.++.++++.++++.+||.+..+ .+
T Consensus 67 ~~i~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~L 146 (510)
T PRK09700 67 INYNKLDHKLAAQLGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANL 146 (510)
T ss_pred EECCCCCHHHHHHCCeEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchhhC
Confidence 88633 12 23467999999999999999999998753210 011 123445678999999999976554 45
Q ss_pred CCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEE
Q 006897 204 VGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVV 265 (627)
Q Consensus 204 ~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv 265 (627)
+|||+|| ||+|||+.++..++++|+++++ .|+|||++|||++ ++.++||++++|++|+++
T Consensus 147 SgG~~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~g~tiiivsHd~~-~~~~~~d~v~~l~~G~i~ 224 (510)
T PRK09700 147 SISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRK-EGTAIVYISHKLA-EIRRICDRYTVMKDGSSV 224 (510)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCHH-HHHHhCCEEEEEECCEEe
Confidence 6999999 9999999999999999999976 4899999999998 488999999999999999
Q ss_pred eeCCHHHH
Q 006897 266 HYGSLELL 273 (627)
Q Consensus 266 ~~G~~~~~ 273 (627)
+.|+++++
T Consensus 225 ~~g~~~~~ 232 (510)
T PRK09700 225 CSGMVSDV 232 (510)
T ss_pred eecchhhC
Confidence 99988765
|
|
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-32 Score=335.77 Aligned_cols=204 Identities=20% Similarity=0.346 Sum_probs=178.9
Q ss_pred ceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEEC
Q 006897 55 CKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVN 134 (627)
Q Consensus 55 ~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~ 134 (627)
.+|+++||+|+|+. +++.+|+||||+|++||++||+||||||||||+|+|+|+++|++ |+|.++
T Consensus 1936 ~~L~v~nLsK~Y~~-------------~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~pts---G~I~i~ 1999 (2272)
T TIGR01257 1936 DILRLNELTKVYSG-------------TSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTS---GDATVA 1999 (2272)
T ss_pred ceEEEEEEEEEECC-------------CCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCc---cEEEEC
Confidence 47999999999942 12469999999999999999999999999999999999999864 999999
Q ss_pred CccCCC-hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccCC----cCCcccc
Q 006897 135 CHQIKK-PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAGS----FVGDEEN 209 (627)
Q Consensus 135 g~~~~~-~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~----~~gGe~q 209 (627)
|+++.+ ..+.++.+||+||++.+++.+||+|++.+.+.++ +.++++.+++++++++.+||.+.+++ ++|||||
T Consensus 2000 G~~i~~~~~~~r~~IGy~pQ~~~L~~~LTv~E~L~l~a~l~--g~~~~~~~~~v~~lLe~lgL~~~~dk~~~~LSGGqKq 2077 (2272)
T TIGR01257 2000 GKSILTNISDVHQNMGYCPQFDAIDDLLTGREHLYLYARLR--GVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKR 2077 (2272)
T ss_pred CEECcchHHHHhhhEEEEeccccCCCCCCHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCHHHhcCChhhCCHHHHH
Confidence 998642 3456778999999999999999999999876543 34555667788999999999876654 5599999
Q ss_pred C------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeCCHH
Q 006897 210 R------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGSLE 271 (627)
Q Consensus 210 r------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~ 271 (627)
| ||+|||+.+++.+++.|++++++ |+|||++||+++ ++.++|||+++|++|+++..|+++
T Consensus 2078 RLslA~ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~-g~TIILtTH~me-e~e~lcDrV~IL~~G~i~~~Gs~q 2155 (2272)
T TIGR01257 2078 KLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIRE-GRAVVLTSHSME-ECEALCTRLAIMVKGAFQCLGTIQ 2155 (2272)
T ss_pred HHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEECCHH
Confidence 9 99999999999999999999764 899999999998 699999999999999999999999
Q ss_pred HHHHHHH
Q 006897 272 LLEETIN 278 (627)
Q Consensus 272 ~~~~~~~ 278 (627)
++...+.
T Consensus 2156 ~Lk~~~g 2162 (2272)
T TIGR01257 2156 HLKSKFG 2162 (2272)
T ss_pred HHHHHhC
Confidence 9987775
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >PRK14238 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-32 Score=279.37 Aligned_cols=199 Identities=22% Similarity=0.337 Sum_probs=161.0
Q ss_pred ceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC--CCCCccceEE
Q 006897 55 CKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVR--DQDFDPRSIT 132 (627)
Q Consensus 55 ~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~--~~~~~~G~i~ 132 (627)
.+|+++|++++|+ ++.+|+|+||+|++||+++|+|+||||||||+++|+|+++ |...+.|+|.
T Consensus 23 ~~l~~~~l~~~~~---------------~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~ 87 (271)
T PRK14238 23 VVFDTQNLNLWYG---------------EDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKIL 87 (271)
T ss_pred eEEEEeeeEEEEC---------------CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEE
Confidence 3799999999993 2358999999999999999999999999999999999987 2111349999
Q ss_pred ECCccCCC----hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCC----c----ccc
Q 006897 133 VNCHQIKK----PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGL----T----HVA 200 (627)
Q Consensus 133 i~g~~~~~----~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL----~----~~~ 200 (627)
++|+++.. ...+++.+||++|++.+++. |+.||+.++...+. ..+++..++.+.++++.+++ . ...
T Consensus 88 ~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~eni~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~ 165 (271)
T PRK14238 88 YRDQNIFDKSYSVEELRTNVGMVFQKPNPFPK-SIYDNVTYGPKIHG-IKDKKTLDEIVEKSLRGAAIWDELKDRLHDNA 165 (271)
T ss_pred ECCEEcccccccHHHHhhhEEEEecCCccccc-cHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHcCCcchHHHHHhcCc
Confidence 99988631 23457789999999988874 99999998753221 11222334566777777653 2 233
Q ss_pred CCcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCC
Q 006897 201 GSFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRG 262 (627)
Q Consensus 201 ~~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G 262 (627)
..++|||+|| ||+|||+.++..+.+.|+++++ ++|||++||+++ ++.++||++++|++|
T Consensus 166 ~~LSgGe~qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~--~~tiiivsH~~~-~i~~~~d~i~~l~~G 242 (271)
T PRK14238 166 YGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKK--DYSIIIVTHNMQ-QAARISDKTAFFLNG 242 (271)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHc--CCEEEEEEcCHH-HHHHhCCEEEEEECC
Confidence 4567999998 9999999999999999999964 689999999998 488899999999999
Q ss_pred eEEeeCCHHHH
Q 006897 263 SVVHYGSLELL 273 (627)
Q Consensus 263 ~iv~~G~~~~~ 273 (627)
++++.|+++++
T Consensus 243 ~i~~~g~~~~~ 253 (271)
T PRK14238 243 YVNEYDDTDKI 253 (271)
T ss_pred EEEEeCCHHHH
Confidence 99999998766
|
|
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-31 Score=304.04 Aligned_cols=194 Identities=25% Similarity=0.413 Sum_probs=161.5
Q ss_pred cceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEE
Q 006897 54 TCKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITV 133 (627)
Q Consensus 54 ~~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i 133 (627)
...++++||+|+|+.+ .+.+||+|+||+|++|+.+||+|||||||||++++|.+++.|+. |+|.+
T Consensus 348 ~g~ief~nV~FsYPsR------------pdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~---G~V~i 412 (1228)
T KOG0055|consen 348 KGEIEFRNVCFSYPSR------------PDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTS---GEVLI 412 (1228)
T ss_pred ccceEEEEEEecCCCC------------CcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCC---ceEEE
Confidence 3469999999999643 24579999999999999999999999999999999999999975 99999
Q ss_pred CCccCCC--hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccc------------
Q 006897 134 NCHQIKK--PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHV------------ 199 (627)
Q Consensus 134 ~g~~~~~--~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~------------ 199 (627)
||.++.+ .+.+|.+||.|.|+|.+|. .||+||+.|+. + +..++++.++.+..+..+.
T Consensus 413 dG~di~~~~~~~lr~~iglV~QePvlF~-~tI~eNI~~G~----~----dat~~~i~~a~k~ana~~fi~~lp~g~~T~v 483 (1228)
T KOG0055|consen 413 DGEDIRNLNLKWLRSQIGLVSQEPVLFA-TTIRENIRYGK----P----DATREEIEEAAKAANAHDFILKLPDGYDTLV 483 (1228)
T ss_pred cCccchhcchHHHHhhcCeeeechhhhc-ccHHHHHhcCC----C----cccHHHHHHHHHHccHHHHHHhhHHhhcccc
Confidence 9999743 5778999999999999886 59999999873 1 1223344445444433221
Q ss_pred ---cCCcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhhee
Q 006897 200 ---AGSFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLI 258 (627)
Q Consensus 200 ---~~~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~v 258 (627)
.-+++|||||| |||+||+.+++.+.+.|.+.. .|+|.|+++|+++. + +.+|+|++
T Consensus 484 ge~g~qLSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~--~grTTivVaHRLSt-I-rnaD~I~v 559 (1228)
T KOG0055|consen 484 GERGVQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKAS--KGRTTIVVAHRLST-I-RNADKIAV 559 (1228)
T ss_pred cCCCCCCChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhh--cCCeEEEEeeehhh-h-hccCEEEE
Confidence 22456999999 899999999999999999875 48999999999983 5 55999999
Q ss_pred ecCCeEEeeCCHHHHHH
Q 006897 259 LSRGSVVHYGSLELLEE 275 (627)
Q Consensus 259 L~~G~iv~~G~~~~~~~ 275 (627)
|++|+|++.|+++|+.+
T Consensus 560 ~~~G~IvE~G~h~ELi~ 576 (1228)
T KOG0055|consen 560 MEEGKIVEQGTHDELIA 576 (1228)
T ss_pred EECCEEEEecCHHHHHh
Confidence 99999999999999864
|
|
| >PRK14260 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-32 Score=277.25 Aligned_cols=199 Identities=20% Similarity=0.339 Sum_probs=164.3
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCC--ccceEEE
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDF--DPRSITV 133 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~--~~G~i~i 133 (627)
.|+++|+++.|+ ++.+|+|+||++++||+++|+|+||||||||+|+|+|+++|+.. +.|+|.+
T Consensus 7 ~l~~~~l~~~~~---------------~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~ 71 (259)
T PRK14260 7 AIKVKDLSFYYN---------------TSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDF 71 (259)
T ss_pred eEEEEEEEEEEC---------------CeEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEE
Confidence 699999999993 24599999999999999999999999999999999999886311 2499999
Q ss_pred CCccCCC----hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCc----ccc----C
Q 006897 134 NCHQIKK----PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLT----HVA----G 201 (627)
Q Consensus 134 ~g~~~~~----~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~~~----~ 201 (627)
+|+++.. ...+++.++|++|++.+++ +|++||+.++...+. ..++.+.++++.++++.+|+. +.. .
T Consensus 72 ~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~ 149 (259)
T PRK14260 72 FGQNIYDPRININRLRRQIGMVFQRPNPFP-MSIYENVAYGVRISA-KLPQADLDEIVESALKGAALWQEVKDKLNKSAL 149 (259)
T ss_pred CCEeccccccchHhhhhheEEEecccccCC-ccHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcc
Confidence 9987632 1345678999999998887 799999988754321 123344556788899999873 222 3
Q ss_pred CcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeec---
Q 006897 202 SFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILS--- 260 (627)
Q Consensus 202 ~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~--- 260 (627)
.++|||+|| ||+|||+.++..+.+.|+++++ ++|||++||+++ ++.++||++++|+
T Consensus 150 ~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~--~~tiii~tH~~~-~i~~~~d~i~~l~~~~ 226 (259)
T PRK14260 150 GLSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRS--ELTIAIVTHNMQ-QATRVSDFTAFFSTDE 226 (259)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc--CCEEEEEeCCHH-HHHHhcCeEEEEeccC
Confidence 566999998 9999999999999999999863 589999999998 5889999999997
Q ss_pred --CCeEEeeCCHHHHH
Q 006897 261 --RGSVVHYGSLELLE 274 (627)
Q Consensus 261 --~G~iv~~G~~~~~~ 274 (627)
+|++++.|+++++.
T Consensus 227 ~~~G~i~~~~~~~~~~ 242 (259)
T PRK14260 227 SRIGQMVEFGVTTQIF 242 (259)
T ss_pred CCCceEEEeCCHHHHh
Confidence 59999999998764
|
|
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-32 Score=305.71 Aligned_cols=193 Identities=21% Similarity=0.345 Sum_probs=166.3
Q ss_pred ceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEEC
Q 006897 55 CKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVN 134 (627)
Q Consensus 55 ~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~ 134 (627)
.+|+++||+++|+ ++.+|+|+||++++||+++|+||||||||||||+|+|+++|++ |+|.++
T Consensus 10 ~~l~~~~l~~~~~---------------~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~---G~i~~~ 71 (510)
T PRK15439 10 PLLCARSISKQYS---------------GVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDS---GTLEIG 71 (510)
T ss_pred ceEEEEeEEEEeC---------------CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCc---eEEEEC
Confidence 3799999999993 2459999999999999999999999999999999999999864 999999
Q ss_pred CccCCC--hhhh-cccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccC----CcCCcc
Q 006897 135 CHQIKK--PAQL-RKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAG----SFVGDE 207 (627)
Q Consensus 135 g~~~~~--~~~~-r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~----~~~gGe 207 (627)
|+++.. .... ++.+||++|++.+++.+||+||+.++.. ..++.+++++++++.+||++..+ .++|||
T Consensus 72 g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~------~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~ 145 (510)
T PRK15439 72 GNPCARLTPAKAHQLGIYLVPQEPLLFPNLSVKENILFGLP------KRQASMQKMKQLLAALGCQLDLDSSAGSLEVAD 145 (510)
T ss_pred CEECCCCCHHHHHhCCEEEEeccCccCCCCcHHHHhhcccc------cchHHHHHHHHHHHHcCCCccccCChhhCCHHH
Confidence 988632 2222 3569999999999999999999988531 12344577899999999976554 456999
Q ss_pred ccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeCC
Q 006897 208 ENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGS 269 (627)
Q Consensus 208 ~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~ 269 (627)
+|| ||+|||+.++..+.+.|+++++ .|+|||++|||++ ++.++||++++|++|++++.|+
T Consensus 146 ~qrv~la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~g~tiiivtHd~~-~~~~~~d~i~~l~~G~i~~~g~ 223 (510)
T PRK15439 146 RQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLA-QGVGIVFISHKLP-EIRQLADRISVMRDGTIALSGK 223 (510)
T ss_pred HHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEecC
Confidence 999 9999999999999999999976 4899999999998 4889999999999999999999
Q ss_pred HHHH
Q 006897 270 LELL 273 (627)
Q Consensus 270 ~~~~ 273 (627)
++++
T Consensus 224 ~~~~ 227 (510)
T PRK15439 224 TADL 227 (510)
T ss_pred hHHc
Confidence 8765
|
|
| >TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-32 Score=273.01 Aligned_cols=191 Identities=26% Similarity=0.485 Sum_probs=160.2
Q ss_pred EEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCc
Q 006897 57 VTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCH 136 (627)
Q Consensus 57 l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~ 136 (627)
|+++|+++.|..+ .+.+.+|+|+||++++||+++|+||||||||||+++|+|+++|++ |+|.++|+
T Consensus 2 l~~~~l~~~~~~~-----------~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~---G~i~~~g~ 67 (220)
T TIGR02982 2 ISIRNLNHYYGHG-----------SLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQE---GSLKVLGQ 67 (220)
T ss_pred EEEEEEEEEccCC-----------CcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---eEEEECCE
Confidence 7899999999421 112569999999999999999999999999999999999998864 99999998
Q ss_pred cCCC--h---hhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccC----CcCCcc
Q 006897 137 QIKK--P---AQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAG----SFVGDE 207 (627)
Q Consensus 137 ~~~~--~---~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~----~~~gGe 207 (627)
++.. . ...++.++|++|++.+++.+|+.||+.++.... .....++.+++++++++.+||.+..+ .++|||
T Consensus 68 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~n~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~ 146 (220)
T TIGR02982 68 ELYGASEKELVQLRRNIGYIFQAHNLLGFLTARQNVQMALELQ-PNLSYQEARERARAMLEAVGLGDHLDYYPHNLSGGQ 146 (220)
T ss_pred EhHhcCHhHHHHHHhheEEEcCChhhcCCCCHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHH
Confidence 8632 1 235678999999999998899999999875432 11234556678999999999976544 456999
Q ss_pred ccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeE
Q 006897 208 ENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSV 264 (627)
Q Consensus 208 ~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~i 264 (627)
+|| |++|||+.++..+.+.|++++++.|+|||++||+++ +.++||++++|++|++
T Consensus 147 ~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~--~~~~~d~v~~l~~g~~ 219 (220)
T TIGR02982 147 KQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNR--ILDVADRIVHMEDGKL 219 (220)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH--HHhhCCEEEEEECCEE
Confidence 998 999999999999999999997656899999999996 4689999999999986
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. |
| >PRK14236 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-32 Score=278.35 Aligned_cols=199 Identities=26% Similarity=0.373 Sum_probs=164.4
Q ss_pred ceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCC--CccceEE
Q 006897 55 CKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQD--FDPRSIT 132 (627)
Q Consensus 55 ~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~--~~~G~i~ 132 (627)
.+|+++|++++|+ ++.+|+|+||++++||+++|+||||||||||+++|+|++++.. .+.|+|.
T Consensus 24 ~~l~~~nl~~~~~---------------~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~ 88 (272)
T PRK14236 24 TALEVRNLNLFYG---------------DKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIR 88 (272)
T ss_pred cEEEEEEEEEEEC---------------CeeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEE
Confidence 3799999999993 2359999999999999999999999999999999999987411 1349999
Q ss_pred ECCccCCC----hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHHHcCCcc--------c
Q 006897 133 VNCHQIKK----PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGM-SHKEKEDRVESLMDELGLTH--------V 199 (627)
Q Consensus 133 i~g~~~~~----~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~-~~~~~~~~v~~~l~~lgL~~--------~ 199 (627)
++|+++.. ...+++.++|++|++.+++. |++||+.+..... +. .+++.+++++++++.+++.+ .
T Consensus 89 i~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 165 (272)
T PRK14236 89 LDGQNIYDKKVDVAELRRRVGMVFQRPNPFPK-SIYENVVYGLRLQ--GINNRRVLDEAVERSLRGAALWDEVKDRLHEN 165 (272)
T ss_pred ECCEECcccccCHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHHcCCChhHHHHhhCC
Confidence 99988632 23457889999999988886 9999998865332 21 23344567888999998852 2
Q ss_pred cCCcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecC
Q 006897 200 AGSFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSR 261 (627)
Q Consensus 200 ~~~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~ 261 (627)
...++|||+|| ||+|||+.++..+.+.|+++++ +.|||++||+++ ++.+.|||+++|++
T Consensus 166 ~~~LS~Gq~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~--~~tiiivtH~~~-~~~~~~d~i~~l~~ 242 (272)
T PRK14236 166 AFGLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKS--KYTIVIVTHNMQ-QAARVSDYTAFMYM 242 (272)
T ss_pred cccCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--CCeEEEEeCCHH-HHHhhCCEEEEEEC
Confidence 34567999998 9999999999999999999964 689999999998 48889999999999
Q ss_pred CeEEeeCCHHHHH
Q 006897 262 GSVVHYGSLELLE 274 (627)
Q Consensus 262 G~iv~~G~~~~~~ 274 (627)
|++++.|+++++.
T Consensus 243 G~i~~~g~~~~~~ 255 (272)
T PRK14236 243 GKLVEYGDTDTLF 255 (272)
T ss_pred CEEEecCCHHHHh
Confidence 9999999987663
|
|
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-32 Score=276.53 Aligned_cols=214 Identities=22% Similarity=0.329 Sum_probs=187.2
Q ss_pred CcceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEE
Q 006897 53 TTCKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSIT 132 (627)
Q Consensus 53 ~~~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~ 132 (627)
.+..++.+||...|+-+.++. +.......++++||+++++||.+||+|+||||||||-++|.+++++. |+|.
T Consensus 273 ~~~ll~~~~v~v~f~i~~g~~----~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~----G~I~ 344 (534)
T COG4172 273 APVLLEVEDLRVWFPIKGGFL----RRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQ----GEIR 344 (534)
T ss_pred CCceEEecceEEEEecCCccc----cccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCcC----ceEE
Confidence 356899999999997664322 22233467999999999999999999999999999999999999863 9999
Q ss_pred ECCccCCC--h---hhhcccEEEEccCC--CCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCcc-----cc
Q 006897 133 VNCHQIKK--P---AQLRKICGFVAQED--NLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTH-----VA 200 (627)
Q Consensus 133 i~g~~~~~--~---~~~r~~ig~v~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-----~~ 200 (627)
++|+++.. . .-+|+++-.||||| .+-|.|||.+-+.-++..+.+..+++++++++.++|+++||+. ..
T Consensus 345 F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYP 424 (534)
T COG4172 345 FDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYP 424 (534)
T ss_pred ECCccccccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCC
Confidence 99999742 2 34678999999997 5899999999999998887777789999999999999999974 34
Q ss_pred CCcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCC
Q 006897 201 GSFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRG 262 (627)
Q Consensus 201 ~~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G 262 (627)
+..+|||||| |||+||-.-+.+++++|+++.+++|.+-+++|||+.. +..+||+++||++|
T Consensus 425 hEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~V-vrAl~~~viVm~~G 503 (534)
T COG4172 425 HEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLAV-VRALCHRVIVMRDG 503 (534)
T ss_pred cccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHHH-HHHhhceEEEEeCC
Confidence 5566999999 9999999999999999999999999999999999995 88899999999999
Q ss_pred eEEeeCCHHHHHH
Q 006897 263 SVVHYGSLELLEE 275 (627)
Q Consensus 263 ~iv~~G~~~~~~~ 275 (627)
+||++|+.+++.+
T Consensus 504 kiVE~G~~~~if~ 516 (534)
T COG4172 504 KIVEQGPTEAVFA 516 (534)
T ss_pred EEeeeCCHHHHhc
Confidence 9999999988753
|
|
| >PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-32 Score=278.44 Aligned_cols=208 Identities=20% Similarity=0.294 Sum_probs=167.6
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
+|+++||+++|....- ...+.++.+|+|+||++++||+++|+||||||||||+++|+|+.+|++ |+|.++|
T Consensus 3 ~l~~~nl~~~~~~~~~------~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~s---G~i~~~g 73 (268)
T PRK10419 3 LLNVSGLSHHYAHGGL------SGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQ---GNVSWRG 73 (268)
T ss_pred eEEEeceEEEecCCcc------ccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---cEEEECC
Confidence 6899999999942100 000013569999999999999999999999999999999999998864 9999999
Q ss_pred ccCCC--h---hhhcccEEEEccCC--CCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCc-ccc----CCc
Q 006897 136 HQIKK--P---AQLRKICGFVAQED--NLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLT-HVA----GSF 203 (627)
Q Consensus 136 ~~~~~--~---~~~r~~ig~v~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~----~~~ 203 (627)
+++.. . ...++.++|++|++ .+++..|+.||+.+.... .......+..++++++++.+|+. +.. ..+
T Consensus 74 ~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~-~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~L 152 (268)
T PRK10419 74 EPLAKLNRAQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRH-LLSLDKAERLARASEMLRAVDLDDSVLDKRPPQL 152 (268)
T ss_pred EeccccChhHHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHh-hccCCHHHHHHHHHHHHHHcCCChhHhhCCCccC
Confidence 87532 1 23567899999997 466778999999875421 11223445566899999999996 333 346
Q ss_pred CCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEE
Q 006897 204 VGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVV 265 (627)
Q Consensus 204 ~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv 265 (627)
+|||+|| ||+|||+.++..+.+.|++++++.|+|+|++||+++ ++.++||++++|++|+++
T Consensus 153 S~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~-~i~~~~d~i~~l~~G~i~ 231 (268)
T PRK10419 153 SGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLR-LVERFCQRVMVMDNGQIV 231 (268)
T ss_pred ChHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHH-HHHHhCCEEEEEECCEEe
Confidence 6999998 999999999999999999998766899999999998 488899999999999999
Q ss_pred eeCCHHHHH
Q 006897 266 HYGSLELLE 274 (627)
Q Consensus 266 ~~G~~~~~~ 274 (627)
+.|+++++.
T Consensus 232 ~~g~~~~~~ 240 (268)
T PRK10419 232 ETQPVGDKL 240 (268)
T ss_pred eeCChhhcc
Confidence 999987653
|
|
| >cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-32 Score=267.72 Aligned_cols=180 Identities=28% Similarity=0.422 Sum_probs=147.7
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
.+.++||+|.|+.+ ++++.+|+|+||++++||+++|+||||||||||+++|+|+++|...+.|+|.++|
T Consensus 3 ~~~~~~~~~~~~~~-----------~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g 71 (202)
T cd03233 3 TLSWRNISFTTGKG-----------RSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNG 71 (202)
T ss_pred eEEEEccEEEeccC-----------CCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECC
Confidence 68999999999632 1346799999999999999999999999999999999999983212349999999
Q ss_pred ccCCCh-hhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccCCcCCccccC----
Q 006897 136 HQIKKP-AQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAGSFVGDEENR---- 210 (627)
Q Consensus 136 ~~~~~~-~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~gGe~qr---- 210 (627)
+++... ...++.++|++|++.+++.+||+||+.++.... ++.....++|||+||
T Consensus 72 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---------------------~~~~~~~LS~Ge~qrl~la 130 (202)
T cd03233 72 IPYKEFAEKYPGEIIYVSEEDVHFPTLTVRETLDFALRCK---------------------GNEFVRGISGGERKRVSIA 130 (202)
T ss_pred EECccchhhhcceEEEEecccccCCCCcHHHHHhhhhhhc---------------------cccchhhCCHHHHHHHHHH
Confidence 886432 346778999999999999999999998764210 334456678999988
Q ss_pred --------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccC-ccHHHHHHhhhheeecCCeEEeeC
Q 006897 211 --------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQ-PSYRILQYISKFLILSRGSVVHYG 268 (627)
Q Consensus 211 --------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~-~~~~i~~~~D~i~vL~~G~iv~~G 268 (627)
||+|||+.+++.+.+.|++++++.+.|+|+++|+ ++ ++.+.||++++|++|++++.|
T Consensus 131 ral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~-~~~~~~d~i~~l~~G~i~~~g 202 (202)
T cd03233 131 EALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASD-EIYDLFDKVLVLYEGRQIYYG 202 (202)
T ss_pred HHHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHH-HHHHhCCeEEEEECCEEEecC
Confidence 9999999999999999999977556777766554 45 588999999999999998764
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-32 Score=291.96 Aligned_cols=189 Identities=26% Similarity=0.462 Sum_probs=163.0
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
.|+++||+++|.+ +++||+++||+|++||.+||+|+|||||||++|+|.++.. . +|+|.+||
T Consensus 351 ~I~F~dV~f~y~~--------------k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~---sG~I~IdG 412 (591)
T KOG0057|consen 351 SIEFDDVHFSYGP--------------KRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-Y---SGSILIDG 412 (591)
T ss_pred cEEEEeeEEEeCC--------------CCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-c---CCcEEECC
Confidence 5999999999953 2459999999999999999999999999999999999987 3 39999999
Q ss_pred ccCC--ChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCcccc-------------
Q 006897 136 HQIK--KPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVA------------- 200 (627)
Q Consensus 136 ~~~~--~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~------------- 200 (627)
+++. +.+.+|+.|||||||..||.+ ||.+||.|+.. ....++|-++.+..|+++..
T Consensus 413 ~dik~~~~~SlR~~Ig~VPQd~~LFnd-TIl~NI~YGn~--------sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGe 483 (591)
T KOG0057|consen 413 QDIKEVSLESLRQSIGVVPQDSVLFND-TILYNIKYGNP--------SASDEEVVEACKRAGLHDVISRLPDGYQTLVGE 483 (591)
T ss_pred eeHhhhChHHhhhheeEeCCcccccch-hHHHHhhcCCC--------CcCHHHHHHHHHHcCcHHHHHhccccchhhHhh
Confidence 9984 357899999999999999976 99999999741 12245577777777876532
Q ss_pred --CCcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeec
Q 006897 201 --GSFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILS 260 (627)
Q Consensus 201 --~~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~ 260 (627)
..++|||||| |||.||.++..++++.+.+.. .|+|+|++.|+++ ..+-||+|++|+
T Consensus 484 rG~~LSGGekQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~~--~~rTvI~IvH~l~--ll~~~DkI~~l~ 559 (591)
T KOG0057|consen 484 RGLMLSGGEKQRVSLARAFLKDAPILLLDEATSALDSETEREILDMIMDVM--SGRTVIMIVHRLD--LLKDFDKIIVLD 559 (591)
T ss_pred cccccccchHHHHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHHhc--CCCeEEEEEecch--hHhcCCEEEEEE
Confidence 3445999999 899999999999999999953 5899999999997 578899999999
Q ss_pred CCeEEeeCCHHHHHH
Q 006897 261 RGSVVHYGSLELLEE 275 (627)
Q Consensus 261 ~G~iv~~G~~~~~~~ 275 (627)
+|++.+.|+.+++..
T Consensus 560 nG~v~e~gth~ell~ 574 (591)
T KOG0057|consen 560 NGTVKEYGTHSELLA 574 (591)
T ss_pred CCeeEEeccHHHHhh
Confidence 999999999999876
|
|
| >PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-32 Score=273.32 Aligned_cols=191 Identities=23% Similarity=0.359 Sum_probs=156.9
Q ss_pred ceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEEC
Q 006897 55 CKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVN 134 (627)
Q Consensus 55 ~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~ 134 (627)
.+|+++||++.|. ++++++|+||++++||+++|+||||||||||+++|+|+.+|++ |+|.++
T Consensus 6 ~~i~~~~l~~~~~---------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~ 67 (225)
T PRK10247 6 PLLQLQNVGYLAG---------------DAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTS---GTLLFE 67 (225)
T ss_pred ceEEEeccEEeeC---------------CceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCC---CeEEEC
Confidence 3799999999993 2459999999999999999999999999999999999998864 999999
Q ss_pred CccCCC--hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCc-ccc----CCcCCcc
Q 006897 135 CHQIKK--PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLT-HVA----GSFVGDE 207 (627)
Q Consensus 135 g~~~~~--~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~----~~~~gGe 207 (627)
|+++.. ....++.++|++|++.+++. |++||+.+....+. . ...+++++++++.+|+. ... ..++|||
T Consensus 68 g~~~~~~~~~~~~~~i~~~~q~~~l~~~-tv~enl~~~~~~~~--~--~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~ 142 (225)
T PRK10247 68 GEDISTLKPEIYRQQVSYCAQTPTLFGD-TVYDNLIFPWQIRN--Q--QPDPAIFLDDLERFALPDTILTKNIAELSGGE 142 (225)
T ss_pred CEEcCcCCHHHHHhccEEEecccccccc-cHHHHHHhHHhhcC--C--ChHHHHHHHHHHHcCCChHHhcCCcccCCHHH
Confidence 987532 33456789999999988875 99999988643321 1 12245678999999995 343 3456999
Q ss_pred ccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeec-CCeEEeeC
Q 006897 208 ENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILS-RGSVVHYG 268 (627)
Q Consensus 208 ~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~-~G~iv~~G 268 (627)
+|| ||+|||+.++..+.+.|++++++.|.|||++||+++. + +.||++++|+ ++..+.+|
T Consensus 143 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~-~-~~~d~i~~l~~~~~~~~~~ 220 (225)
T PRK10247 143 KQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDE-I-NHADKVITLQPHAGEMQEA 220 (225)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHH-H-HhCCEEEEEecccchHhhh
Confidence 998 9999999999999999999987668999999999984 5 5799999994 56666666
Q ss_pred CH
Q 006897 269 SL 270 (627)
Q Consensus 269 ~~ 270 (627)
+.
T Consensus 221 ~~ 222 (225)
T PRK10247 221 RY 222 (225)
T ss_pred hh
Confidence 54
|
|
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-32 Score=317.12 Aligned_cols=188 Identities=26% Similarity=0.391 Sum_probs=160.9
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
.|+++||+++|++ .++.+|+|+||+|++||.+||+||||||||||+|+|+|+++|++ |+|.+||
T Consensus 451 ~I~~~nvsf~Y~~-------------~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~---G~I~idg 514 (686)
T TIGR03797 451 AIEVDRVTFRYRP-------------DGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPES---GSVFYDG 514 (686)
T ss_pred eEEEEEEEEEcCC-------------CCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---CEEEECC
Confidence 5999999999942 12469999999999999999999999999999999999999964 9999999
Q ss_pred ccCC--ChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCcccc-------------
Q 006897 136 HQIK--KPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVA------------- 200 (627)
Q Consensus 136 ~~~~--~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~------------- 200 (627)
+++. +...+|+++|||+|++.+|+. |++|||.++. + ..++++.++++..|+++..
T Consensus 515 ~~i~~~~~~~lr~~i~~v~Q~~~lf~g-TI~eNi~~~~----~-----~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige 584 (686)
T TIGR03797 515 QDLAGLDVQAVRRQLGVVLQNGRLMSG-SIFENIAGGA----P-----LTLDEAWEAARMAGLAEDIRAMPMGMHTVISE 584 (686)
T ss_pred EEcCcCCHHHHHhccEEEccCCccCcc-cHHHHHhcCC----C-----CCHHHHHHHHHHcCcHHHHHhccccccccccC
Confidence 9974 356789999999999999986 9999998752 1 1235577778877776432
Q ss_pred --CCcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeec
Q 006897 201 --GSFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILS 260 (627)
Q Consensus 201 --~~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~ 260 (627)
..++|||||| |||+||+.+++++.+.|+++ ++|+|++||+++ ..+.||+|++|+
T Consensus 585 ~G~~LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~----~~T~IiItHr~~--~i~~~D~Iivl~ 658 (686)
T TIGR03797 585 GGGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERL----KVTRIVIAHRLS--TIRNADRIYVLD 658 (686)
T ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh----CCeEEEEecChH--HHHcCCEEEEEE
Confidence 2356999999 99999999999999999875 479999999997 457799999999
Q ss_pred CCeEEeeCCHHHHHH
Q 006897 261 RGSVVHYGSLELLEE 275 (627)
Q Consensus 261 ~G~iv~~G~~~~~~~ 275 (627)
+|++++.|+++++.+
T Consensus 659 ~G~iv~~G~~~~Ll~ 673 (686)
T TIGR03797 659 AGRVVQQGTYDELMA 673 (686)
T ss_pred CCEEEEECCHHHHHh
Confidence 999999999988753
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-32 Score=314.14 Aligned_cols=189 Identities=21% Similarity=0.368 Sum_probs=157.7
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
.++++||++.|.+ ++++|+|+||++++||.+||+||||||||||+++|+|++ |++ |+|.+||
T Consensus 349 ~i~~~~vsf~~~~--------------~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~---G~I~i~g 410 (588)
T PRK11174 349 TIEAEDLEILSPD--------------GKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQ---GSLKING 410 (588)
T ss_pred eEEEEeeEEeccC--------------CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCC---cEEEECC
Confidence 5999999987631 246999999999999999999999999999999999999 753 9999999
Q ss_pred ccCCC--hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccc--------------
Q 006897 136 HQIKK--PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHV-------------- 199 (627)
Q Consensus 136 ~~~~~--~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-------------- 199 (627)
.++.+ .+.+|++|+||+|++.+|+. |++|||.++. +..+ +++++++++..++++.
T Consensus 411 ~~i~~~~~~~lr~~i~~v~Q~~~LF~~-TI~eNI~~g~----~~~~----~eei~~al~~a~l~~~i~~lp~G~dT~vge 481 (588)
T PRK11174 411 IELRELDPESWRKHLSWVGQNPQLPHG-TLRDNVLLGN----PDAS----DEQLQQALENAWVSEFLPLLPQGLDTPIGD 481 (588)
T ss_pred EecccCCHHHHHhheEEecCCCcCCCc-CHHHHhhcCC----CCCC----HHHHHHHHHHhCHHHHHHhccccccccccc
Confidence 98743 56789999999999999986 9999999862 1122 3445555555554321
Q ss_pred -cCCcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeec
Q 006897 200 -AGSFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILS 260 (627)
Q Consensus 200 -~~~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~ 260 (627)
...++|||||| |||+||+.+++.+.+.|+++. .++|+|++||+++ ..+.||+|++|+
T Consensus 482 ~G~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~--~~~TvIiItHrl~--~i~~aD~Iivl~ 557 (588)
T PRK11174 482 QAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAAS--RRQTTLMVTHQLE--DLAQWDQIWVMQ 557 (588)
T ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh--CCCEEEEEecChH--HHHhCCEEEEEe
Confidence 23466999999 999999999999999999985 4799999999997 457799999999
Q ss_pred CCeEEeeCCHHHHHH
Q 006897 261 RGSVVHYGSLELLEE 275 (627)
Q Consensus 261 ~G~iv~~G~~~~~~~ 275 (627)
+|++++.|+.+++.+
T Consensus 558 ~G~i~e~G~~~eL~~ 572 (588)
T PRK11174 558 DGQIVQQGDYAELSQ 572 (588)
T ss_pred CCeEeecCCHHHHHh
Confidence 999999999988754
|
|
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-32 Score=312.69 Aligned_cols=192 Identities=20% Similarity=0.354 Sum_probs=161.5
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
.++++||+++|++ +++.+|+|+|+++++||.+||+||||||||||+|+|+|+++|++ |+|.+||
T Consensus 341 ~i~~~~vsf~y~~-------------~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~---G~I~i~g 404 (582)
T PRK11176 341 DIEFRNVTFTYPG-------------KEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDE---GEILLDG 404 (582)
T ss_pred eEEEEEEEEecCC-------------CCCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCC---ceEEECC
Confidence 5999999999942 23469999999999999999999999999999999999999964 9999999
Q ss_pred ccCCC--hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccc--------------
Q 006897 136 HQIKK--PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHV-------------- 199 (627)
Q Consensus 136 ~~~~~--~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-------------- 199 (627)
.++.+ ...+++.++||||++.+|+. |++|||.++. + .+..+++++++++.+|+++.
T Consensus 405 ~~i~~~~~~~~~~~i~~v~Q~~~lf~~-Ti~~Ni~~~~----~---~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~ 476 (582)
T PRK11176 405 HDLRDYTLASLRNQVALVSQNVHLFND-TIANNIAYAR----T---EQYSREQIEEAARMAYAMDFINKMDNGLDTVIGE 476 (582)
T ss_pred EEhhhcCHHHHHhhceEEccCceeecc-hHHHHHhcCC----C---CCCCHHHHHHHHHHhCcHHHHHhcccccCceeCC
Confidence 98643 46788999999999999986 9999998752 1 11124556667777665432
Q ss_pred -cCCcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeec
Q 006897 200 -AGSFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILS 260 (627)
Q Consensus 200 -~~~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~ 260 (627)
...++|||||| |||+||+.++..+++.|+++. .++|+|++||+++ ..+.||+|++|+
T Consensus 477 ~g~~LSGGqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~--~~~tvI~VtHr~~--~~~~~D~Ii~l~ 552 (582)
T PRK11176 477 NGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQ--KNRTSLVIAHRLS--TIEKADEILVVE 552 (582)
T ss_pred CCCcCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHh--CCCEEEEEecchH--HHHhCCEEEEEE
Confidence 13356999999 999999999999999999985 3689999999996 467899999999
Q ss_pred CCeEEeeCCHHHHHH
Q 006897 261 RGSVVHYGSLELLEE 275 (627)
Q Consensus 261 ~G~iv~~G~~~~~~~ 275 (627)
+|++++.|+++++.+
T Consensus 553 ~g~i~e~g~~~~l~~ 567 (582)
T PRK11176 553 DGEIVERGTHAELLA 567 (582)
T ss_pred CCEEEEeCCHHHHHh
Confidence 999999999988753
|
|
| >PRK14246 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-32 Score=274.60 Aligned_cols=201 Identities=22% Similarity=0.362 Sum_probs=164.0
Q ss_pred ceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCc---cceE
Q 006897 55 CKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFD---PRSI 131 (627)
Q Consensus 55 ~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~---~G~i 131 (627)
++|+++|++++|+ ++.+|+|+||++++||+++|+||||||||||+++|+|+.+|+.+. .|++
T Consensus 9 ~~i~~~~~~~~~~---------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~ 73 (257)
T PRK14246 9 DVFNISRLYLYIN---------------DKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKV 73 (257)
T ss_pred hheeeeeEEEecC---------------CceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEE
Confidence 4799999999993 346999999999999999999999999999999999999886411 1455
Q ss_pred EECCccCC--ChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCcc----cc----C
Q 006897 132 TVNCHQIK--KPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTH----VA----G 201 (627)
Q Consensus 132 ~i~g~~~~--~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~----~~----~ 201 (627)
.++|+++. .....++.++|++|++.+++.+|++||+.++.... ....+++..+++.++++.+++.+ .. .
T Consensus 74 ~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 152 (257)
T PRK14246 74 LYFGKDIFQIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSH-GIKEKREIKKIVEECLRKVGLWKEVYDRLNSPAS 152 (257)
T ss_pred EECCcccccCCHHHHhcceEEEccCCccCCCCcHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHHcCCCccchhhhcCCcc
Confidence 55555542 22356778999999999999899999999875322 11134455677899999999852 22 3
Q ss_pred CcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCe
Q 006897 202 SFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGS 263 (627)
Q Consensus 202 ~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~ 263 (627)
.++|||+|| ||+|||+.++..+.+.|+++++ +.|||++||+++ .+.++||++++|++|+
T Consensus 153 ~LS~G~~qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tiilvsh~~~-~~~~~~d~v~~l~~g~ 229 (257)
T PRK14246 153 QLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKN--EIAIVIVSHNPQ-QVARVADYVAFLYNGE 229 (257)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc--CcEEEEEECCHH-HHHHhCCEEEEEECCE
Confidence 456999998 9999999999999999999853 589999999998 4789999999999999
Q ss_pred EEeeCCHHHHH
Q 006897 264 VVHYGSLELLE 274 (627)
Q Consensus 264 iv~~G~~~~~~ 274 (627)
+++.|+++++.
T Consensus 230 i~~~g~~~~~~ 240 (257)
T PRK14246 230 LVEWGSSNEIF 240 (257)
T ss_pred EEEECCHHHHH
Confidence 99999988764
|
|
| >TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-31 Score=273.76 Aligned_cols=199 Identities=22% Similarity=0.300 Sum_probs=162.1
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
+|+++||++.|+ ++.+|+|+||++++||+++|+||||||||||+++|+|+++|.. |+|.++|
T Consensus 3 ~l~~~~l~~~~~---------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g 64 (253)
T TIGR02323 3 LLQVSGLSKSYG---------------GGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDH---GTATYIM 64 (253)
T ss_pred eEEEeeeEEEeC---------------CceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCC---cEEEEec
Confidence 699999999993 2358999999999999999999999999999999999998864 9999998
Q ss_pred cc-----CCC--hh----hhcccEEEEccCCC--CCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCc-ccc-
Q 006897 136 HQ-----IKK--PA----QLRKICGFVAQEDN--LLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLT-HVA- 200 (627)
Q Consensus 136 ~~-----~~~--~~----~~r~~ig~v~Q~~~--l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~- 200 (627)
++ +.. .. ..++.++|++|++. +++.+|+.||+.+..... ......+.+++++++++.+|+. +..
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~l~~l~l~~~~~~ 143 (253)
T TIGR02323 65 RSGAELELYQLSEAERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAI-GARHYGNIRAAAHDWLEEVEIDPTRID 143 (253)
T ss_pred ccccccccccCCHHHHHHhhhcceEEEEeCcccccCccccHHHHHHHHHHHh-cccchHHHHHHHHHHHHHcCCChhhhh
Confidence 76 422 11 12457999999974 456679999997643211 1111224457789999999996 343
Q ss_pred ---CCcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheee
Q 006897 201 ---GSFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLIL 259 (627)
Q Consensus 201 ---~~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL 259 (627)
..++|||+|| ||+|||+.++..+.+.|++++++.|.|||++||+++ ++.++||++++|
T Consensus 144 ~~~~~LSgG~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~-~~~~~~d~~~~l 222 (253)
T TIGR02323 144 DLPRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLG-VARLLAQRLLVM 222 (253)
T ss_pred cCchhcCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEE
Confidence 3456999998 999999999999999999987656899999999998 478899999999
Q ss_pred cCCeEEeeCCHHHHH
Q 006897 260 SRGSVVHYGSLELLE 274 (627)
Q Consensus 260 ~~G~iv~~G~~~~~~ 274 (627)
++|++++.|+++++.
T Consensus 223 ~~G~i~~~~~~~~~~ 237 (253)
T TIGR02323 223 QQGRVVESGLTDQVL 237 (253)
T ss_pred ECCEEEEECCHHHHh
Confidence 999999999987664
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se. |
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=8.5e-32 Score=302.65 Aligned_cols=206 Identities=21% Similarity=0.322 Sum_probs=168.7
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC--CCccceEEE
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQ--DFDPRSITV 133 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~--~~~~G~i~i 133 (627)
+|+++||+++|+.+ +..+.+|+|+||++++||++||+||||||||||+|+|+|+++|. ..++|+|.+
T Consensus 5 ~l~~~~l~~~~~~~-----------~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~ 73 (529)
T PRK15134 5 LLAIENLSVAFRQQ-----------QTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRF 73 (529)
T ss_pred eEEEeceEEEecCC-----------CCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEE
Confidence 79999999999421 01246999999999999999999999999999999999999862 113499999
Q ss_pred CCccCCC--hh---hhc-ccEEEEccCCC--CCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCcc-------
Q 006897 134 NCHQIKK--PA---QLR-KICGFVAQEDN--LLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTH------- 198 (627)
Q Consensus 134 ~g~~~~~--~~---~~r-~~ig~v~Q~~~--l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~------- 198 (627)
+|+++.. .. ..+ +.+|||+|++. +++.+|+.|++.+..... .+.++.+..++++++++.+||.+
T Consensus 74 ~g~~i~~~~~~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~ 152 (529)
T PRK15134 74 HGESLLHASEQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLH-RGMRREAARGEILNCLDRVGIRQAAKRLTD 152 (529)
T ss_pred CCEecccCCHHHHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHCCCCChHHHHhh
Confidence 9988632 11 233 57999999974 667789999998754321 12345566788999999999964
Q ss_pred ccCCcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeec
Q 006897 199 VAGSFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILS 260 (627)
Q Consensus 199 ~~~~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~ 260 (627)
...+++|||+|| ||++||+.++..++++|++++++.|+|||++|||++ ++.++||||++|+
T Consensus 153 ~~~~LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~dri~~l~ 231 (529)
T PRK15134 153 YPHQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLS-IVRKLADRVAVMQ 231 (529)
T ss_pred CCcccCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHH-HHHHhcCEEEEEE
Confidence 235677999999 999999999999999999998766899999999998 4888999999999
Q ss_pred CCeEEeeCCHHHHH
Q 006897 261 RGSVVHYGSLELLE 274 (627)
Q Consensus 261 ~G~iv~~G~~~~~~ 274 (627)
+|++++.|+++++.
T Consensus 232 ~G~i~~~g~~~~~~ 245 (529)
T PRK15134 232 NGRCVEQNRAATLF 245 (529)
T ss_pred CCEEEEeCCHHHHh
Confidence 99999999987763
|
|
| >PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.4e-32 Score=308.49 Aligned_cols=191 Identities=26% Similarity=0.487 Sum_probs=164.0
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
.|+++||+++|+++ ++.+|+|+||++++||.+||+||||||||||+|+|+|+++|++ |+|.+||
T Consensus 338 ~i~~~~v~f~y~~~-------------~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~---G~I~i~g 401 (574)
T PRK11160 338 SLTLNNVSFTYPDQ-------------PQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQ---GEILLNG 401 (574)
T ss_pred eEEEEEEEEECCCC-------------CCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCC---ceEEECC
Confidence 59999999999421 2359999999999999999999999999999999999999864 9999999
Q ss_pred ccCCC--hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccC------------
Q 006897 136 HQIKK--PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAG------------ 201 (627)
Q Consensus 136 ~~~~~--~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~------------ 201 (627)
.++.+ ...+|+.++||+|++.+|+. |++||+.++. + +..++++.++++.+++++..+
T Consensus 402 ~~i~~~~~~~~r~~i~~v~Q~~~lf~~-ti~~Ni~~~~----~----~~~~~~i~~al~~~~l~~~i~~p~GldT~vge~ 472 (574)
T PRK11160 402 QPIADYSEAALRQAISVVSQRVHLFSA-TLRDNLLLAA----P----NASDEALIEVLQQVGLEKLLEDDKGLNAWLGEG 472 (574)
T ss_pred EEhhhCCHHHHHhheeEEcccchhhcc-cHHHHhhcCC----C----ccCHHHHHHHHHHcCCHHHHcCccccCchhcCC
Confidence 98743 46788999999999999986 9999998852 1 123456888889988876432
Q ss_pred --CcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecC
Q 006897 202 --SFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSR 261 (627)
Q Consensus 202 --~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~ 261 (627)
.++|||||| ||++||+.+++.+.+.|+++. .++|+|++||+++. .+.||+|++|++
T Consensus 473 g~~LSgGqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~--~~~tviiitHr~~~--~~~~d~i~~l~~ 548 (574)
T PRK11160 473 GRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHA--QNKTVLMITHRLTG--LEQFDRICVMDN 548 (574)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc--CCCEEEEEecChhH--HHhCCEEEEEeC
Confidence 356999999 999999999999999999985 47999999999973 467999999999
Q ss_pred CeEEeeCCHHHHHH
Q 006897 262 GSVVHYGSLELLEE 275 (627)
Q Consensus 262 G~iv~~G~~~~~~~ 275 (627)
|++++.|+++++.+
T Consensus 549 G~i~~~g~~~~l~~ 562 (574)
T PRK11160 549 GQIIEQGTHQELLA 562 (574)
T ss_pred CeEEEeCCHHHHHh
Confidence 99999999988753
|
|
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.4e-31 Score=282.10 Aligned_cols=202 Identities=18% Similarity=0.313 Sum_probs=165.2
Q ss_pred cceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC--CCccceE
Q 006897 54 TCKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQ--DFDPRSI 131 (627)
Q Consensus 54 ~~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~--~~~~G~i 131 (627)
...|+++|++++|.. +.+.+|+|+||+|++||++||+||||||||||+++|+|+.++. ..+.|+|
T Consensus 78 ~~~i~~~nls~~y~~-------------~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I 144 (329)
T PRK14257 78 ANVFEIRNFNFWYMN-------------RTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEI 144 (329)
T ss_pred CceEEEEeeEEEecC-------------CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEE
Confidence 347999999999942 1245999999999999999999999999999999999998641 1134999
Q ss_pred EECCccCCC----hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHHHcCCc--------c
Q 006897 132 TVNCHQIKK----PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMS-HKEKEDRVESLMDELGLT--------H 198 (627)
Q Consensus 132 ~i~g~~~~~----~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~-~~~~~~~v~~~l~~lgL~--------~ 198 (627)
.++|+++.. ...+|+.++||||++.+++ .|++||+.|+.... +.. ++..++.+.++++.++|. +
T Consensus 145 ~idG~~i~~~~~~~~~lr~~i~~v~q~~~~~~-~ti~eNi~~~~~~~--~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~ 221 (329)
T PRK14257 145 YFLGTNTRSKKISSLELRTRIGMVFQKPTPFE-MSIFDNVAYGPRNN--GINDRKILEKIVEKSLKSAALWDEVKDDLDK 221 (329)
T ss_pred EECCEEccccccchHhhhccEEEEecCCccCC-CcHHHHHHhHHHhc--CCChHHHHHHHHHHHHHHcCCcchhhhhhhC
Confidence 999998642 1356788999999999886 69999999875321 222 222345578888888873 2
Q ss_pred ccCCcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeec
Q 006897 199 VAGSFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILS 260 (627)
Q Consensus 199 ~~~~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~ 260 (627)
....++|||+|| ||++||+.+...+.+.|+++.+ ++|||++||+++ .+.++||||++|+
T Consensus 222 ~~~~LSgGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~--~~Tii~iTH~l~-~i~~~~Driivl~ 298 (329)
T PRK14257 222 AGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKK--KYSIIIVTHSMA-QAQRISDETVFFY 298 (329)
T ss_pred CcccCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc--CCEEEEEeCCHH-HHHHhCCEEEEEE
Confidence 334567999999 9999999999999999999864 689999999998 4888899999999
Q ss_pred CCeEEeeCCHHHHH
Q 006897 261 RGSVVHYGSLELLE 274 (627)
Q Consensus 261 ~G~iv~~G~~~~~~ 274 (627)
+|++++.|+++++.
T Consensus 299 ~G~i~e~g~~~~l~ 312 (329)
T PRK14257 299 QGWIEEAGETKTIF 312 (329)
T ss_pred CCEEEEeCCHHHHh
Confidence 99999999998874
|
|
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=4.4e-32 Score=304.94 Aligned_cols=212 Identities=25% Similarity=0.332 Sum_probs=169.2
Q ss_pred cceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEE
Q 006897 54 TCKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITV 133 (627)
Q Consensus 54 ~~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i 133 (627)
..+|+++||+++|+.+... .+.+.+.+.+|+|+||+|++||++||+||||||||||+|+|+|+++ + +|+|.+
T Consensus 273 ~~~l~~~~l~~~~~~~~~~----~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~-~---~G~i~~ 344 (529)
T PRK15134 273 SPLLDVEQLQVAFPIRKGI----LKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN-S---QGEIWF 344 (529)
T ss_pred CCcccccCcEEEeecCccc----cccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCC-C---CcEEEE
Confidence 3479999999999421000 0000013469999999999999999999999999999999999984 3 399999
Q ss_pred CCccCCC--hh---hhcccEEEEccCC--CCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCc-ccc----C
Q 006897 134 NCHQIKK--PA---QLRKICGFVAQED--NLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLT-HVA----G 201 (627)
Q Consensus 134 ~g~~~~~--~~---~~r~~ig~v~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~----~ 201 (627)
+|+++.. .. .+++.+|||+|++ .+++.+||.||+.++...+....++++.++++.++++.+||. +.. .
T Consensus 345 ~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 424 (529)
T PRK15134 345 DGQPLHNLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRYPA 424 (529)
T ss_pred CCEEccccchhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhcCCc
Confidence 9987632 11 2466799999996 478889999999987532211123445567889999999996 333 4
Q ss_pred CcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCe
Q 006897 202 SFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGS 263 (627)
Q Consensus 202 ~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~ 263 (627)
+++|||+|| ||+|||+.++..++++|++++++.|+|||++|||++ ++.++||++++|++|+
T Consensus 425 ~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~-~~~~~~d~i~~l~~G~ 503 (529)
T PRK15134 425 EFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLH-VVRALCHQVIVLRQGE 503 (529)
T ss_pred cCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHH-HHHHhcCeEEEEECCE
Confidence 567999999 999999999999999999998766899999999998 4889999999999999
Q ss_pred EEeeCCHHHHH
Q 006897 264 VVHYGSLELLE 274 (627)
Q Consensus 264 iv~~G~~~~~~ 274 (627)
+++.|+++++.
T Consensus 504 i~~~~~~~~~~ 514 (529)
T PRK15134 504 VVEQGDCERVF 514 (529)
T ss_pred EEEEcCHHHHh
Confidence 99999988764
|
|
| >TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Probab=99.98 E-value=4e-32 Score=273.08 Aligned_cols=178 Identities=28% Similarity=0.423 Sum_probs=150.3
Q ss_pred eeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCccCCChhhhcccEEEEccCCCCCCCCCHHHH
Q 006897 87 LKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKKPAQLRKICGFVAQEDNLLPLLTVKET 166 (627)
Q Consensus 87 L~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~~~~~~~~r~~ig~v~Q~~~l~~~lTV~e~ 166 (627)
|+|+||++++||+++|+||||||||||+|+|+|+++|++ |+|.++|+++... ....+|++|++.+++.+||.||
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~---G~i~~~g~~~~~~---~~~~~~v~q~~~l~~~~tv~e~ 74 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTS---GGVILEGKQITEP---GPDRMVVFQNYSLLPWLTVREN 74 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---ceEEECCEECCCC---ChhheEEecCcccCCCCCHHHH
Confidence 579999999999999999999999999999999998864 9999999885321 1224899999999998999999
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccC----CcCCccccC------------------CCCCCCHHHHHHHH
Q 006897 167 LMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAG----SFVGDEENR------------------GISGLDSTSALQVI 224 (627)
Q Consensus 167 l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~----~~~gGe~qr------------------PtsgLD~~~~~~i~ 224 (627)
+.+..........+++.++++.++++.+||++..+ .++|||+|| ||+|||+.++..+.
T Consensus 75 l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~ 154 (230)
T TIGR01184 75 IALAVDRVLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQ 154 (230)
T ss_pred HHHHHHhcccCCCHHHHHHHHHHHHHHcCCHHHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHH
Confidence 98864211122334555677899999999976554 466999998 99999999999999
Q ss_pred HHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeCCHH
Q 006897 225 ELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGSLE 271 (627)
Q Consensus 225 ~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~ 271 (627)
+.|++++++.|+|||++||+++ ++.++||++++|++|++++.|+..
T Consensus 155 ~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l~~G~i~~~~~~~ 200 (230)
T TIGR01184 155 EELMQIWEEHRVTVLMVTHDVD-EALLLSDRVVMLTNGPAANIGQIL 200 (230)
T ss_pred HHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEeCCcEecccCce
Confidence 9999998766899999999998 588999999999999999888654
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. |
| >PRK14265 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.8e-31 Score=275.24 Aligned_cols=199 Identities=23% Similarity=0.305 Sum_probs=162.0
Q ss_pred cceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC--CCccceE
Q 006897 54 TCKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQ--DFDPRSI 131 (627)
Q Consensus 54 ~~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~--~~~~G~i 131 (627)
..+|+++||+++|+ ++.+|+|+||++++||+++|+||||||||||+++|+|++++. ....|+|
T Consensus 18 ~~~l~~~nl~~~~~---------------~~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i 82 (274)
T PRK14265 18 HSVFEVEGVKVFYG---------------GFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRL 82 (274)
T ss_pred CceEEEeeEEEEeC---------------CeEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceE
Confidence 34899999999993 245999999999999999999999999999999999998642 1124999
Q ss_pred EECCccCCC----hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCc----c----c
Q 006897 132 TVNCHQIKK----PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLT----H----V 199 (627)
Q Consensus 132 ~i~g~~~~~----~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~----~ 199 (627)
.++|+++.. ...+++.++|++|++.+++. ||.||+.++...+ +.. .+.++.++++++.+++. + .
T Consensus 83 ~~~g~~l~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~~nl~~~~~~~--~~~-~~~~~~~~~~l~~~~l~~~l~~~~~~~ 158 (274)
T PRK14265 83 LYRDRNIYDSQINSVKLRRQVGMVFQRPNPFPK-SIYENIAFAPRAN--GYK-GNLDELVEDSLRRAAIWEEVKDKLKEK 158 (274)
T ss_pred EECCEecccccchhHHHhhcEEEEccCCccccc-cHHHHHHhHHHhc--Cch-HHHHHHHHHHHHHcccchhhHHHhcCC
Confidence 999988632 23457789999999988875 9999999865322 111 22345567788888763 2 2
Q ss_pred cCCcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeec-
Q 006897 200 AGSFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILS- 260 (627)
Q Consensus 200 ~~~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~- 260 (627)
...++|||+|| ||+|||+.++..+.+.|+++++ +.|||++|||++ ++.++|||+++|+
T Consensus 159 ~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~--~~tiii~sH~~~-~~~~~~d~i~~l~~ 235 (274)
T PRK14265 159 GTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKE--QYTIIMVTHNMQ-QASRVADWTAFFNT 235 (274)
T ss_pred cccCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc--CCEEEEEeCCHH-HHHHhCCEEEEEec
Confidence 34567999998 9999999999999999999963 689999999998 5889999999997
Q ss_pred --------CCeEEeeCCHHHHH
Q 006897 261 --------RGSVVHYGSLELLE 274 (627)
Q Consensus 261 --------~G~iv~~G~~~~~~ 274 (627)
+|++++.|+++++.
T Consensus 236 ~~~~~~~~~G~~~~~g~~~~~~ 257 (274)
T PRK14265 236 EIDEYGKRRGKLVEFSPTEQMF 257 (274)
T ss_pred ccccccccCceEEEeCCHHHHH
Confidence 89999999998774
|
|
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=4e-32 Score=309.61 Aligned_cols=188 Identities=21% Similarity=0.344 Sum_probs=161.8
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
.++++|++++|++ ++++|+|+||++++||.+||+|+||||||||+|+|+|+++|++ |+|.+||
T Consensus 340 ~i~~~~v~f~y~~--------------~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~---G~I~idg 402 (592)
T PRK10790 340 RIDIDNVSFAYRD--------------DNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTE---GEIRLDG 402 (592)
T ss_pred eEEEEEEEEEeCC--------------CCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCC---ceEEECC
Confidence 5899999999942 2359999999999999999999999999999999999999964 9999999
Q ss_pred ccCC--ChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCcccc-------------
Q 006897 136 HQIK--KPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVA------------- 200 (627)
Q Consensus 136 ~~~~--~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~------------- 200 (627)
.++. +.+.+|++|+||||++.+|++ |++|||.++. . ..+++++++++.+|+++..
T Consensus 403 ~~i~~~~~~~l~~~i~~v~Q~~~lF~~-Ti~~NI~~~~-----~----~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e 472 (592)
T PRK10790 403 RPLSSLSHSVLRQGVAMVQQDPVVLAD-TFLANVTLGR-----D----ISEEQVWQALETVQLAELARSLPDGLYTPLGE 472 (592)
T ss_pred EEhhhCCHHHHHhheEEEccCCccccc-hHHHHHHhCC-----C----CCHHHHHHHHHHcCcHHHHHhccccccccccC
Confidence 9874 356889999999999999987 9999999862 1 1234577777777765422
Q ss_pred --CCcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeec
Q 006897 201 --GSFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILS 260 (627)
Q Consensus 201 --~~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~ 260 (627)
..++|||+|| |||+||+.+++.+.+.|+++.+ ++|+|++||+++ ..+.||+|++|+
T Consensus 473 ~g~~LSGGqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~--~~tvIivtHr~~--~l~~~D~ii~l~ 548 (592)
T PRK10790 473 QGNNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVRE--HTTLVVIAHRLS--TIVEADTILVLH 548 (592)
T ss_pred CCCCCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhC--CCEEEEEecchH--HHHhCCEEEEEE
Confidence 2356999999 9999999999999999999853 689999999996 467799999999
Q ss_pred CCeEEeeCCHHHHH
Q 006897 261 RGSVVHYGSLELLE 274 (627)
Q Consensus 261 ~G~iv~~G~~~~~~ 274 (627)
+|++++.|+++++.
T Consensus 549 ~G~i~~~G~~~~L~ 562 (592)
T PRK10790 549 RGQAVEQGTHQQLL 562 (592)
T ss_pred CCEEEEEcCHHHHH
Confidence 99999999999875
|
|
| >PRK14252 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.1e-31 Score=273.57 Aligned_cols=199 Identities=21% Similarity=0.359 Sum_probs=163.0
Q ss_pred ceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCC--CccceEE
Q 006897 55 CKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQD--FDPRSIT 132 (627)
Q Consensus 55 ~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~--~~~G~i~ 132 (627)
..|+++||+++|+ ++.+|+|+||++++||+++|+||||||||||+++|+|+.+|.. .++|+|.
T Consensus 15 ~~l~~~~l~~~~~---------------~~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~ 79 (265)
T PRK14252 15 QKSEVNKLNFYYG---------------GYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEII 79 (265)
T ss_pred ceEEEEEEEEEEC---------------CeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEE
Confidence 3699999999993 2359999999999999999999999999999999999987521 1359999
Q ss_pred ECCccCC------ChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCH-HHHHHHHHHHHHHcCCc--------
Q 006897 133 VNCHQIK------KPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSH-KEKEDRVESLMDELGLT-------- 197 (627)
Q Consensus 133 i~g~~~~------~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~-~~~~~~v~~~l~~lgL~-------- 197 (627)
++|+++. ....+++.+||++|++.+++. |++||+.++.... +... ...++++.++++.+++.
T Consensus 80 ~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~ 156 (265)
T PRK14252 80 LHPDNVNILSPEVDPIEVRMRISMVFQKPNPFPK-SIFENVAYGLRIR--GVKRRSILEERVENALRNAALWDEVKDRLG 156 (265)
T ss_pred EcCccccccccccCHHHHhccEEEEccCCcCCcc-hHHHHHHhHHHHc--CCChHHHHHHHHHHHHHHcCCchhhhHHHh
Confidence 9997642 123457789999999998886 9999998865322 2222 23356788888888873
Q ss_pred cccCCcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheee
Q 006897 198 HVAGSFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLIL 259 (627)
Q Consensus 198 ~~~~~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL 259 (627)
.....++|||+|| ||+|||+.++..+.+.|+++++ +.|||++||+++ ++.++|||+++|
T Consensus 157 ~~~~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~--~~tiiivth~~~-~~~~~~d~i~~l 233 (265)
T PRK14252 157 DLAFNLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKN--KVTILIVTHNMQ-QAARVSDYTAYM 233 (265)
T ss_pred CCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh--CCEEEEEecCHH-HHHHhCCEEEEE
Confidence 2234567999998 9999999999999999999964 589999999998 588899999999
Q ss_pred cCCeEEeeCCHHHHH
Q 006897 260 SRGSVVHYGSLELLE 274 (627)
Q Consensus 260 ~~G~iv~~G~~~~~~ 274 (627)
++|++++.|+.+++.
T Consensus 234 ~~G~i~~~g~~~~~~ 248 (265)
T PRK14252 234 YMGELIEFGATDTIF 248 (265)
T ss_pred ECCEEEEeCCHHHHH
Confidence 999999999987764
|
|
| >PRK14266 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.9e-31 Score=271.64 Aligned_cols=199 Identities=23% Similarity=0.331 Sum_probs=163.7
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC--CCCCccceEEE
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVR--DQDFDPRSITV 133 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~--~~~~~~G~i~i 133 (627)
+|+++||++.|+ ++.+|+|+||++++||+++|+||||||||||+++|+|+.. |...+.|+|.+
T Consensus 3 ~l~~~~v~~~~~---------------~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~ 67 (250)
T PRK14266 3 RIEVENLNTYFD---------------DAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYL 67 (250)
T ss_pred EEEEEeEEEEeC---------------CeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEE
Confidence 689999999993 2459999999999999999999999999999999999865 31113499999
Q ss_pred CCccCCC----hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCcc--------ccC
Q 006897 134 NCHQIKK----PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTH--------VAG 201 (627)
Q Consensus 134 ~g~~~~~----~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~--------~~~ 201 (627)
+|+++.. ....++.++|+||++.+++. |+.||+.+...... ....+..++++.++++.+|+.+ ...
T Consensus 68 ~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~~-t~~~nl~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~ 145 (250)
T PRK14266 68 DGVDIYDPAVDVVELRKKVGMVFQKPNPFPK-SIFDNVAYGLRIHG-EDDEDFIEERVEESLKAAALWDEVKDKLDKSAL 145 (250)
T ss_pred CCEEcccccccHHHHhhheEEEecCCccCcc-hHHHHHHhHHhhcC-CCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcc
Confidence 9988632 23467789999999988885 99999988643221 1123445677889999998742 234
Q ss_pred CcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCe
Q 006897 202 SFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGS 263 (627)
Q Consensus 202 ~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~ 263 (627)
.++|||+|| |++|||+.++..+.+.|++++ + +.|||++||+++ ++.+.||++++|++|+
T Consensus 146 ~LS~Gq~qrv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~-~-~~tiii~sh~~~-~~~~~~~~i~~l~~G~ 222 (250)
T PRK14266 146 GLSGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLK-E-DYTIVIVTHNMQ-QATRVSKYTSFFLNGE 222 (250)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-c-CCeEEEEECCHH-HHHhhcCEEEEEECCe
Confidence 566999998 999999999999999999995 3 789999999998 5899999999999999
Q ss_pred EEeeCCHHHHH
Q 006897 264 VVHYGSLELLE 274 (627)
Q Consensus 264 iv~~G~~~~~~ 274 (627)
+++.|+++++.
T Consensus 223 i~~~g~~~~~~ 233 (250)
T PRK14266 223 IIESGLTDQIF 233 (250)
T ss_pred EEEeCCHHHHH
Confidence 99999988763
|
|
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=7.9e-32 Score=300.96 Aligned_cols=194 Identities=20% Similarity=0.316 Sum_probs=164.4
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
+|+++||+++|+ ++.+|+|+||++++||+++|+||||||||||+|+|+|+++|++ |+|.++|
T Consensus 4 ~l~~~~l~~~~~---------------~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~---G~I~~~g 65 (501)
T PRK11288 4 YLSFDGIGKTFP---------------GVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDA---GSILIDG 65 (501)
T ss_pred eEEEeeeEEEEC---------------CEEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCC---CEEEECC
Confidence 799999999993 2459999999999999999999999999999999999998864 9999999
Q ss_pred ccCCC---hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCC-CCHHHHHHHHHHHHHHcCCccccC----CcCCcc
Q 006897 136 HQIKK---PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKG-MSHKEKEDRVESLMDELGLTHVAG----SFVGDE 207 (627)
Q Consensus 136 ~~~~~---~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~-~~~~~~~~~v~~~l~~lgL~~~~~----~~~gGe 207 (627)
+++.. ...+++.+|||+|++.+++.+||.||+.++......+ ....+.++++.++++.+||++..+ .++|||
T Consensus 66 ~~i~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq 145 (501)
T PRK11288 66 QEMRFASTTAALAAGVAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQ 145 (501)
T ss_pred EECCCCCHHHHHhCCEEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCchhhCCHHH
Confidence 88632 1235678999999999999999999999863211111 234455678999999999975444 466999
Q ss_pred ccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeCC
Q 006897 208 ENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGS 269 (627)
Q Consensus 208 ~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~ 269 (627)
+|| ||+|||+.++..+.+.|+++++ .|+|||++|||++ ++.++|||+++|++|+++..++
T Consensus 146 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~g~tiiiitHd~~-~~~~~~d~i~~l~~G~i~~~~~ 223 (501)
T PRK11288 146 RQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRA-EGRVILYVSHRME-EIFALCDAITVFKDGRYVATFD 223 (501)
T ss_pred HHHHHHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEeecC
Confidence 999 9999999999999999999975 5899999999998 5889999999999999987665
|
|
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.2e-31 Score=300.85 Aligned_cols=205 Identities=20% Similarity=0.347 Sum_probs=168.3
Q ss_pred cceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEE
Q 006897 54 TCKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITV 133 (627)
Q Consensus 54 ~~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i 133 (627)
..+|+++||+++|... ..+.+.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++ |+|.+
T Consensus 277 ~~~l~~~~l~~~~~~~----------~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~---G~i~~ 343 (520)
T TIGR03269 277 EPIIKVRNVSKRYISV----------DRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTS---GEVNV 343 (520)
T ss_pred CceEEEeccEEEeccC----------CCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---eEEEE
Confidence 3479999999999421 0122469999999999999999999999999999999999998864 99999
Q ss_pred C-Ccc---CCC-----hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCcc-----c
Q 006897 134 N-CHQ---IKK-----PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTH-----V 199 (627)
Q Consensus 134 ~-g~~---~~~-----~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-----~ 199 (627)
+ |.+ +.. ....++++||++|++.+++.+||.||+.+.... ..++++.++++.++++.+||.+ .
T Consensus 344 ~~g~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 420 (520)
T TIGR03269 344 RVGDEWVDMTKPGPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGL---ELPDELARMKAVITLKMVGFDEEKAEEI 420 (520)
T ss_pred ecCCccccccccchhhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHc---CCCHHHHHHHHHHHHHhCCCCCccchhh
Confidence 6 542 111 113456799999998899999999999886432 1233444567899999999964 2
Q ss_pred c----CCcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhhe
Q 006897 200 A----GSFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFL 257 (627)
Q Consensus 200 ~----~~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~ 257 (627)
. .+++|||+|| ||+|||+.++..+++.|++++++.|.|||++|||++ ++.++|||++
T Consensus 421 ~~~~~~~LSgGq~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~-~~~~~~d~i~ 499 (520)
T TIGR03269 421 LDKYPDELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMD-FVLDVCDRAA 499 (520)
T ss_pred hhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHH-HHHHhCCEEE
Confidence 2 4567999999 999999999999999999998766899999999998 5889999999
Q ss_pred eecCCeEEeeCCHHHHHH
Q 006897 258 ILSRGSVVHYGSLELLEE 275 (627)
Q Consensus 258 vL~~G~iv~~G~~~~~~~ 275 (627)
+|++|++++.|+++++.+
T Consensus 500 ~l~~G~i~~~g~~~~~~~ 517 (520)
T TIGR03269 500 LMRDGKIVKIGDPEEIVE 517 (520)
T ss_pred EEECCEEEEECCHHHHHh
Confidence 999999999999887654
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.7e-32 Score=299.26 Aligned_cols=193 Identities=24% Similarity=0.409 Sum_probs=161.6
Q ss_pred ceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEEC
Q 006897 55 CKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVN 134 (627)
Q Consensus 55 ~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~ 134 (627)
..|+++||+|.|+.+ .+.+||+|+||+|+|||++|||||||+||||+.++|-.++.|++ |+|.+|
T Consensus 464 G~IeF~~VsFaYP~R------------p~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~Pts---G~IllD 528 (716)
T KOG0058|consen 464 GVIEFEDVSFAYPTR------------PDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTS---GRILLD 528 (716)
T ss_pred ceEEEEEeeeecCCC------------CCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCC---CeEEEC
Confidence 369999999999754 34679999999999999999999999999999999999999975 999999
Q ss_pred CccCC--ChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcC-------CccccC----
Q 006897 135 CHQIK--KPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELG-------LTHVAG---- 201 (627)
Q Consensus 135 g~~~~--~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lg-------L~~~~~---- 201 (627)
|+|+. +...+|++||+|.|+|.||.. ||+|||.|+.. ..+.+ +++.+.+..+ +++-.|
T Consensus 529 G~~i~~~~~~~lr~~Ig~V~QEPvLFs~-sI~eNI~YG~~----~~t~e----~i~~AAk~ANah~FI~~~p~gY~T~VG 599 (716)
T KOG0058|consen 529 GVPISDINHKYLRRKIGLVGQEPVLFSG-SIRENIAYGLD----NATDE----EIEAAAKMANAHEFITNFPDGYNTVVG 599 (716)
T ss_pred CeehhhcCHHHHHHHeeeeeccceeecc-cHHHHHhcCCC----CCCHH----HHHHHHHHhChHHHHHhCccccccccC
Confidence 99985 357789999999999999986 99999999853 22333 3333333332 222222
Q ss_pred ----CcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheee
Q 006897 202 ----SFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLIL 259 (627)
Q Consensus 202 ----~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL 259 (627)
+++|||||| .||+||..++..+-+.|.++.+ ++|||+|.|+++ ..+.+|+|+++
T Consensus 600 EkG~qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~--~rTVlvIAHRLS--TV~~Ad~Ivvi 675 (716)
T KOG0058|consen 600 EKGSQLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQ--GRTVLVIAHRLS--TVRHADQIVVI 675 (716)
T ss_pred CccccccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhc--CCeEEEEehhhh--HhhhccEEEEE
Confidence 456999999 6899999999999999999874 699999999998 46889999999
Q ss_pred cCCeEEeeCCHHHHHH
Q 006897 260 SRGSVVHYGSLELLEE 275 (627)
Q Consensus 260 ~~G~iv~~G~~~~~~~ 275 (627)
++|++++.|+.+|+.+
T Consensus 676 ~~G~V~E~G~h~eLl~ 691 (716)
T KOG0058|consen 676 DKGRVVEMGTHDELLS 691 (716)
T ss_pred cCCeEEecccHHHHhh
Confidence 9999999999988864
|
|
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.2e-32 Score=317.94 Aligned_cols=189 Identities=21% Similarity=0.330 Sum_probs=159.4
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
.|+++||+|+|++ .++++|+|+||+|++||.+||+||||||||||+|+|+|+++|++ |+|.+||
T Consensus 477 ~I~~~~vsf~y~~-------------~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~---G~I~idg 540 (710)
T TIGR03796 477 YVELRNITFGYSP-------------LEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWS---GEILFDG 540 (710)
T ss_pred eEEEEEEEEecCC-------------CCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCC---cEEEECC
Confidence 5999999999952 23469999999999999999999999999999999999999964 9999999
Q ss_pred ccCC--ChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCcccc-------------
Q 006897 136 HQIK--KPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVA------------- 200 (627)
Q Consensus 136 ~~~~--~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~------------- 200 (627)
.++. +..++|+++|||+|++.+|+. |++|||.++. +. ..++++.++++..|+++..
T Consensus 541 ~~i~~~~~~~lr~~i~~v~Q~~~lf~g-Ti~eNi~l~~----~~----~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e 611 (710)
T TIGR03796 541 IPREEIPREVLANSVAMVDQDIFLFEG-TVRDNLTLWD----PT----IPDADLVRACKDAAIHDVITSRPGGYDAELAE 611 (710)
T ss_pred EeHHHCCHHHHHhheeEEecCChhhhc-cHHHHhhCCC----CC----CCHHHHHHHHHHhCCHHHHHhCcCcccceecc
Confidence 9873 356789999999999999976 9999998741 11 1234566667766665322
Q ss_pred --CCcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeec
Q 006897 201 --GSFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILS 260 (627)
Q Consensus 201 --~~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~ 260 (627)
..++|||||| |||+||+.+++++.+.|++ .++|+|++||+++ ..+.||||++|+
T Consensus 612 ~G~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~----~~~T~IiitHrl~--~i~~~D~Iivl~ 685 (710)
T TIGR03796 612 GGANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR----RGCTCIIVAHRLS--TIRDCDEIIVLE 685 (710)
T ss_pred CCCCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh----cCCEEEEEecCHH--HHHhCCEEEEEe
Confidence 2356999999 9999999999999999975 3799999999997 356799999999
Q ss_pred CCeEEeeCCHHHHHH
Q 006897 261 RGSVVHYGSLELLEE 275 (627)
Q Consensus 261 ~G~iv~~G~~~~~~~ 275 (627)
+|++++.|+++++.+
T Consensus 686 ~G~i~~~G~~~~Ll~ 700 (710)
T TIGR03796 686 RGKVVQRGTHEELWA 700 (710)
T ss_pred CCEEEEecCHHHHHH
Confidence 999999999998864
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Probab=99.98 E-value=4.5e-32 Score=314.41 Aligned_cols=193 Identities=25% Similarity=0.439 Sum_probs=163.2
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
.|+++||+++|++ .++++|+|+||+|++||.+||+||||||||||+|+|+|+++|++ |+|.+||
T Consensus 463 ~I~~~~vsf~Y~~-------------~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~---G~I~idg 526 (694)
T TIGR03375 463 EIEFRNVSFAYPG-------------QETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTE---GSVLLDG 526 (694)
T ss_pred eEEEEEEEEEeCC-------------CCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCC---ceEEECC
Confidence 5999999999942 23469999999999999999999999999999999999999964 9999999
Q ss_pred ccCC--ChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCcccc-------------
Q 006897 136 HQIK--KPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVA------------- 200 (627)
Q Consensus 136 ~~~~--~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~------------- 200 (627)
.++. +...+|+.++||+|++.+|+. |++|||.++. +.. .++++.++++..|+.+..
T Consensus 527 ~~l~~~~~~~lr~~i~~v~Q~~~lf~~-TI~eNi~~~~----~~~----~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e 597 (694)
T TIGR03375 527 VDIRQIDPADLRRNIGYVPQDPRLFYG-TLRDNIALGA----PYA----DDEEILRAAELAGVTEFVRRHPDGLDMQIGE 597 (694)
T ss_pred EEhhhCCHHHHHhccEEECCChhhhhh-hHHHHHhCCC----CCC----CHHHHHHHHHHcChHHHHHhCcccccceecC
Confidence 9874 356789999999999999986 9999998752 111 234566667766664322
Q ss_pred --CCcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeec
Q 006897 201 --GSFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILS 260 (627)
Q Consensus 201 --~~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~ 260 (627)
..++|||||| |||+||+.+++++.+.|+++. .++|+|++||+++ ..+.||+|++|+
T Consensus 598 ~G~~LSgGQrQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~--~~~T~iiItHrl~--~~~~~D~iivl~ 673 (694)
T TIGR03375 598 RGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWL--AGKTLVLVTHRTS--LLDLVDRIIVMD 673 (694)
T ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh--CCCEEEEEecCHH--HHHhCCEEEEEe
Confidence 2456999999 999999999999999999986 3799999999997 467899999999
Q ss_pred CCeEEeeCCHHHHHHHH
Q 006897 261 RGSVVHYGSLELLEETI 277 (627)
Q Consensus 261 ~G~iv~~G~~~~~~~~~ 277 (627)
+|++++.|+++++.+..
T Consensus 674 ~G~i~e~G~~~eLl~~~ 690 (694)
T TIGR03375 674 NGRIVADGPKDQVLEAL 690 (694)
T ss_pred CCEEEeeCCHHHHHHHh
Confidence 99999999999886653
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. |
| >PRK14243 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.6e-31 Score=274.22 Aligned_cols=197 Identities=22% Similarity=0.338 Sum_probs=161.3
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC--CCccceEEE
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQ--DFDPRSITV 133 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~--~~~~G~i~i 133 (627)
+|+++||+++|+ ++++|+|+||+|++||+++|+||||||||||+|+|+|+.++. ..+.|+|.+
T Consensus 10 ~l~i~~v~~~~~---------------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~ 74 (264)
T PRK14243 10 VLRTENLNVYYG---------------SFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTF 74 (264)
T ss_pred EEEEeeeEEEEC---------------CEEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEE
Confidence 799999999993 235999999999999999999999999999999999997631 113499999
Q ss_pred CCccCC----ChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCcc--------ccC
Q 006897 134 NCHQIK----KPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTH--------VAG 201 (627)
Q Consensus 134 ~g~~~~----~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~--------~~~ 201 (627)
+|+++. ....+++.++|++|++.+++. |+.||+.++...+ +.. .+.++++.++++.+++.+ ...
T Consensus 75 ~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~--~~~-~~~~~~~~~~l~~~~l~~~l~~~~~~~~~ 150 (264)
T PRK14243 75 HGKNLYAPDVDPVEVRRRIGMVFQKPNPFPK-SIYDNIAYGARIN--GYK-GDMDELVERSLRQAALWDEVKDKLKQSGL 150 (264)
T ss_pred CCEEccccccChHHHhhhEEEEccCCccccc-cHHHHHHhhhhhc--Ccc-hHHHHHHHHHHHHhCchhhHHHHhcCCcc
Confidence 998753 123567789999999988874 9999999875322 111 233456777788877732 233
Q ss_pred CcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeec---
Q 006897 202 SFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILS--- 260 (627)
Q Consensus 202 ~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~--- 260 (627)
.++|||+|| ||+|||+.++..+.+.|+++++ ++|||++||+++ ++.++|||+++|+
T Consensus 151 ~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~--~~tvi~vtH~~~-~~~~~~d~v~~l~~~~ 227 (264)
T PRK14243 151 SLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKE--QYTIIIVTHNMQ-QAARVSDMTAFFNVEL 227 (264)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc--CCEEEEEecCHH-HHHHhCCEEEEEeccc
Confidence 567999998 9999999999999999999964 479999999998 5899999999998
Q ss_pred ------CCeEEeeCCHHHHH
Q 006897 261 ------RGSVVHYGSLELLE 274 (627)
Q Consensus 261 ------~G~iv~~G~~~~~~ 274 (627)
+|++++.|+++++.
T Consensus 228 ~~~~~~~g~i~~~~~~~~~~ 247 (264)
T PRK14243 228 TEGGGRYGYLVEFDRTEKIF 247 (264)
T ss_pred ccccccCceEEEeCCHHHHH
Confidence 89999999998874
|
|
| >TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.8e-32 Score=314.98 Aligned_cols=190 Identities=22% Similarity=0.383 Sum_probs=157.6
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
.|+++||+++|+++ .++.+|+|+||++++||.+||+||||||||||+|+|+|+++|++ |+|.+||
T Consensus 478 ~I~~~nVsf~Y~~~------------~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~---G~I~idg 542 (711)
T TIGR00958 478 LIEFQDVSFSYPNR------------PDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTG---GQVLLDG 542 (711)
T ss_pred eEEEEEEEEECCCC------------CCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCC---CEEEECC
Confidence 59999999999532 13469999999999999999999999999999999999999964 9999999
Q ss_pred ccCC--ChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCcccc-------------
Q 006897 136 HQIK--KPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVA------------- 200 (627)
Q Consensus 136 ~~~~--~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~------------- 200 (627)
+++. +...+|++++||+|++.+|+. |++|||.++. +..+ ++++.++++..++++..
T Consensus 543 ~~i~~~~~~~lr~~i~~v~Q~~~lF~g-TIreNI~~g~----~~~~----~e~i~~al~~a~l~~~i~~lp~GldT~ige 613 (711)
T TIGR00958 543 VPLVQYDHHYLHRQVALVGQEPVLFSG-SVRENIAYGL----TDTP----DEEIMAAAKAANAHDFIMEFPNGYDTEVGE 613 (711)
T ss_pred EEHHhcCHHHHHhhceEEecCcccccc-CHHHHHhcCC----CCCC----HHHHHHHHHHcCCHHHHHhCCCccCCcccC
Confidence 9874 346788999999999999975 9999998862 1112 34566777777665321
Q ss_pred --CCcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeec
Q 006897 201 --GSFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILS 260 (627)
Q Consensus 201 --~~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~ 260 (627)
..++|||||| |||+||+.+++.+.+ .. . ..++|+|++||+++ ..+.||+|++|+
T Consensus 614 ~G~~LSGGQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~-~~-~--~~~~TvIiItHrl~--~i~~aD~IivL~ 687 (711)
T TIGR00958 614 KGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQE-SR-S--RASRTVLLIAHRLS--TVERADQILVLK 687 (711)
T ss_pred CCCcCCHHHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH-hh-c--cCCCeEEEEeccHH--HHHhCCEEEEEE
Confidence 2456999999 999999999999988 22 2 24799999999997 457799999999
Q ss_pred CCeEEeeCCHHHHHH
Q 006897 261 RGSVVHYGSLELLEE 275 (627)
Q Consensus 261 ~G~iv~~G~~~~~~~ 275 (627)
+|++++.|+++++.+
T Consensus 688 ~G~ive~Gt~~eL~~ 702 (711)
T TIGR00958 688 KGSVVEMGTHKQLME 702 (711)
T ss_pred CCEEEEeeCHHHHHh
Confidence 999999999998764
|
|
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.5e-31 Score=300.06 Aligned_cols=200 Identities=25% Similarity=0.336 Sum_probs=166.0
Q ss_pred EEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCC--CCCCCccceEEEC
Q 006897 57 VTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRV--RDQDFDPRSITVN 134 (627)
Q Consensus 57 l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~--~~~~~~~G~i~i~ 134 (627)
|+++|++++|. ++.+|+|+||++++||+++|+||||||||||+|+|+|++ +|++ |+|.++
T Consensus 1 l~~~~l~~~~~---------------~~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~---G~i~~~ 62 (520)
T TIGR03269 1 IEVKNLTKKFD---------------GKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTS---GRIIYH 62 (520)
T ss_pred CEEEEEEEEEC---------------CeEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCc---eEEEEe
Confidence 47899999993 246999999999999999999999999999999999997 5653 999987
Q ss_pred -----------------------CccC-------CC-----hhhhcccEEEEccC-CCCCCCCCHHHHHHHHHHhcCCCC
Q 006897 135 -----------------------CHQI-------KK-----PAQLRKICGFVAQE-DNLLPLLTVKETLMFSANFRLKGM 178 (627)
Q Consensus 135 -----------------------g~~~-------~~-----~~~~r~~ig~v~Q~-~~l~~~lTV~e~l~~~~~~~~~~~ 178 (627)
|.++ .. ....++.++|++|+ +.+++.+||+||+.++.... +.
T Consensus 63 ~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~--~~ 140 (520)
T TIGR03269 63 VALCEKCGYVERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEI--GY 140 (520)
T ss_pred ccccccccccccccccccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHc--CC
Confidence 2221 00 02346679999997 67888899999999875432 23
Q ss_pred CHHHHHHHHHHHHHHcCCcccc----CCcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCC
Q 006897 179 SHKEKEDRVESLMDELGLTHVA----GSFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQR 236 (627)
Q Consensus 179 ~~~~~~~~v~~~l~~lgL~~~~----~~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~ 236 (627)
+.++.++++.++++.+||++.. .+++|||+|| ||++||+.++..++++|++++++.|+
T Consensus 141 ~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~ 220 (520)
T TIGR03269 141 EGKEAVGRAVDLIEMVQLSHRITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGI 220 (520)
T ss_pred CHHHHHHHHHHHHHHcCChhhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCc
Confidence 4455667899999999997654 4566999999 99999999999999999999776689
Q ss_pred EEEEEccCccHHHHHHhhhheeecCCeEEeeCCHHHHHHHH
Q 006897 237 TVVLSIHQPSYRILQYISKFLILSRGSVVHYGSLELLEETI 277 (627)
Q Consensus 237 Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~~~~ 277 (627)
|||++|||++ .+.++||++++|++|++++.|+++++.+.+
T Consensus 221 tviivtHd~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 260 (520)
T TIGR03269 221 SMVLTSHWPE-VIEDLSDKAIWLENGEIKEEGTPDEVVAVF 260 (520)
T ss_pred EEEEEeCCHH-HHHHhcCEEEEEeCCEEeeecCHHHHHHHH
Confidence 9999999998 478899999999999999999988775543
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.98 E-value=8.8e-32 Score=300.70 Aligned_cols=200 Identities=20% Similarity=0.294 Sum_probs=165.9
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
+|+++||+++|+ ++.+|+|+||++++||+++|+||||||||||+|+|+|+++|. .++|+|.++|
T Consensus 1 ~l~i~~l~~~~~---------------~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~-~~~G~i~~~g 64 (500)
T TIGR02633 1 LLEMKGIVKTFG---------------GVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHG-TWDGEIYWSG 64 (500)
T ss_pred CEEEEeEEEEeC---------------CeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCC-CCCeEEEECC
Confidence 378999999993 245999999999999999999999999999999999999862 1249999999
Q ss_pred ccCCC--hh-hhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCC--CCHHHHHHHHHHHHHHcCCcccc-----CCcCC
Q 006897 136 HQIKK--PA-QLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKG--MSHKEKEDRVESLMDELGLTHVA-----GSFVG 205 (627)
Q Consensus 136 ~~~~~--~~-~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~--~~~~~~~~~v~~~l~~lgL~~~~-----~~~~g 205 (627)
+++.. .. ..++.+|||||++.+++.+||.||+.++......+ ...++.+++++++++.+||.+.. .+++|
T Consensus 65 ~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSg 144 (500)
T TIGR02633 65 SPLKASNIRDTERAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGG 144 (500)
T ss_pred EECCCCCHHHHHhCCEEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCH
Confidence 88632 11 23567999999998999999999998864322111 23345567889999999997542 35679
Q ss_pred ccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEee
Q 006897 206 DEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHY 267 (627)
Q Consensus 206 Ge~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~ 267 (627)
||+|| ||+|||+.++..+.+.|+++++ .|+|||++|||++ ++.++||++++|++|+++..
T Consensus 145 G~~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~g~tviiitHd~~-~~~~~~d~i~~l~~G~i~~~ 222 (500)
T TIGR02633 145 GQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKA-HGVACVYISHKLN-EVKAVCDTICVIRDGQHVAT 222 (500)
T ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCcHH-HHHHhCCEEEEEeCCeEeee
Confidence 99999 9999999999999999999975 5899999999998 58899999999999999999
Q ss_pred CCHHHH
Q 006897 268 GSLELL 273 (627)
Q Consensus 268 G~~~~~ 273 (627)
|+++++
T Consensus 223 ~~~~~~ 228 (500)
T TIGR02633 223 KDMSTM 228 (500)
T ss_pred cCcccC
Confidence 877543
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >TIGR02770 nickel_nikD nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.1e-31 Score=269.98 Aligned_cols=186 Identities=18% Similarity=0.265 Sum_probs=153.2
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCC-CccceEEECCccCCChhhhcccEEEEccCCC--CCCCCC
Q 006897 86 ILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQD-FDPRSITVNCHQIKKPAQLRKICGFVAQEDN--LLPLLT 162 (627)
Q Consensus 86 iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~-~~~G~i~i~g~~~~~~~~~r~~ig~v~Q~~~--l~~~lT 162 (627)
+|+|+||++++||+++|+||||||||||+|+|+|+++|.. .+.|+|.++|+++......++.++|++|++. +++.+|
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t 80 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFT 80 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccC
Confidence 5899999999999999999999999999999999998720 0139999999886432222357999999974 556789
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCc---ccc----CCcCCccccC------------------CCCCCCH
Q 006897 163 VKETLMFSANFRLKGMSHKEKEDRVESLMDELGLT---HVA----GSFVGDEENR------------------GISGLDS 217 (627)
Q Consensus 163 V~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~---~~~----~~~~gGe~qr------------------PtsgLD~ 217 (627)
+.||+.+..... +...++.++++.++++.+|++ +.. ..++|||+|| ||+|||+
T Consensus 81 ~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDEPt~~LD~ 158 (230)
T TIGR02770 81 MGNHAIETLRSL--GKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDV 158 (230)
T ss_pred HHHHHHHHHHHc--CccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCccccCH
Confidence 999998765322 122344567799999999997 333 3566999998 9999999
Q ss_pred HHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeCCHHHHH
Q 006897 218 TSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGSLELLE 274 (627)
Q Consensus 218 ~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~ 274 (627)
.++..+.+.|++++++.|+|||++||+++ ++.++||++++|++|++++.|+++++.
T Consensus 159 ~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 214 (230)
T TIGR02770 159 VNQARVLKLLRELRQLFGTGILLITHDLG-VVARIADEVAVMDDGRIVERGTVKEIF 214 (230)
T ss_pred HHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999997656899999999998 588899999999999999999988764
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous. |
| >PRK14263 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.2e-31 Score=271.46 Aligned_cols=197 Identities=20% Similarity=0.276 Sum_probs=163.6
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCC--CccceEEE
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQD--FDPRSITV 133 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~--~~~G~i~i 133 (627)
.+.+++++++|. ++.+|+|+||++++||+++|+||||||||||+|+|+|+++|.. .+.|+|.+
T Consensus 8 ~~~~~~~~~~~~---------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~ 72 (261)
T PRK14263 8 VMDCKLDKIFYG---------------NFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHF 72 (261)
T ss_pred eEEEEeEEEEeC---------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEE
Confidence 589999999993 3469999999999999999999999999999999999997621 13499999
Q ss_pred CCccCCC----hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccc--------cC
Q 006897 134 NCHQIKK----PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHV--------AG 201 (627)
Q Consensus 134 ~g~~~~~----~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~--------~~ 201 (627)
+|+++.. ...+++.++|++|++.++ .+|+.||+.++...+ .. .++..+++.++++.++|.+. ..
T Consensus 73 ~g~~i~~~~~~~~~~~~~i~~v~q~~~~~-~~tv~enl~~~~~~~--~~-~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~ 148 (261)
T PRK14263 73 LGQDVYGKGVDPVVVRRYIGMVFQQPNPF-SMSIFDNVAFGLRLN--RY-KGDLGDRVKHALQGAALWDEVKDKLKVSGL 148 (261)
T ss_pred CCEeccccccchHhhhhceEEEecCCccc-cccHHHHHHHHHhhc--Cc-hHHHHHHHHHHHHHcCCchhhhhhhhCCcc
Confidence 9988632 124567899999999888 489999999875432 11 23445678999999998532 13
Q ss_pred CcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeec---
Q 006897 202 SFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILS--- 260 (627)
Q Consensus 202 ~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~--- 260 (627)
.++|||+|| ||+|||+.++.++.+.|++++ + ++|+|++||+++ ++.++|||+++|+
T Consensus 149 ~LS~G~~qrv~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~-~-~~tii~isH~~~-~i~~~~d~v~~l~~~~ 225 (261)
T PRK14263 149 SLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELK-K-DYTIALVTHNMQ-QAIRVADTTAFFSVDI 225 (261)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-c-CCeEEEEeCCHH-HHHHhCCEEEEEeccc
Confidence 467999998 999999999999999999995 3 689999999998 5889999999995
Q ss_pred -----CCeEEeeCCHHHHH
Q 006897 261 -----RGSVVHYGSLELLE 274 (627)
Q Consensus 261 -----~G~iv~~G~~~~~~ 274 (627)
+|++++.|+++++.
T Consensus 226 ~~~~~~G~i~~~g~~~~~~ 244 (261)
T PRK14263 226 SQGTRTGYLVEMGPTAQIF 244 (261)
T ss_pred ccccCCceEEEeCCHHHHH
Confidence 89999999988764
|
|
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.98 E-value=9.5e-32 Score=289.26 Aligned_cols=195 Identities=21% Similarity=0.332 Sum_probs=169.6
Q ss_pred ceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEEC
Q 006897 55 CKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVN 134 (627)
Q Consensus 55 ~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~ 134 (627)
+.++++|++|+|+ ..++|+||||++++||++||+|.||||||||+|+|+|.++|++ |+|.++
T Consensus 7 ~ll~~~~i~K~Fg---------------gV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~---G~I~~~ 68 (500)
T COG1129 7 PLLELRGISKSFG---------------GVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDS---GEILID 68 (500)
T ss_pred ceeeeecceEEcC---------------CceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCC---ceEEEC
Confidence 4799999999993 4579999999999999999999999999999999999999975 999999
Q ss_pred CccCC--Chh-hhcccEEEEccCCCCCCCCCHHHHHHHHHHhcC--CCCCHHHHHHHHHHHHHHcCCccccCC----cCC
Q 006897 135 CHQIK--KPA-QLRKICGFVAQEDNLLPLLTVKETLMFSANFRL--KGMSHKEKEDRVESLMDELGLTHVAGS----FVG 205 (627)
Q Consensus 135 g~~~~--~~~-~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~--~~~~~~~~~~~v~~~l~~lgL~~~~~~----~~g 205 (627)
|++.. ++. .....|+.|+|+..+.|+|||.||+.++...+. ..++++..++++.++|+.+|+....++ +++
T Consensus 69 G~~~~~~sp~~A~~~GI~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~~Lsi 148 (500)
T COG1129 69 GKPVAFSSPRDALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVGDLSI 148 (500)
T ss_pred CEEccCCCHHHHHhCCcEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhhhCCH
Confidence 99863 333 345679999999999999999999998764432 124678889999999999998533444 446
Q ss_pred ccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEee
Q 006897 206 DEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHY 267 (627)
Q Consensus 206 Ge~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~ 267 (627)
||||- ||+.|+......+++.++++++ +|.+||+|||.++ |++++||||.||++|+.+..
T Consensus 149 aqrQ~VeIArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~-~Gv~ii~ISHrl~-Ei~~i~DritVlRDG~~v~~ 226 (500)
T COG1129 149 AQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLKA-QGVAIIYISHRLD-EVFEIADRITVLRDGRVVGT 226 (500)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-CCCEEEEEcCcHH-HHHHhcCEEEEEeCCEEeee
Confidence 78875 9999999999999999999975 6999999999999 79999999999999999988
Q ss_pred CC
Q 006897 268 GS 269 (627)
Q Consensus 268 G~ 269 (627)
++
T Consensus 227 ~~ 228 (500)
T COG1129 227 RP 228 (500)
T ss_pred cc
Confidence 77
|
|
| >cd03289 ABCC_CFTR2 The CFTR subfamily domain 2 | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.2e-32 Score=277.31 Aligned_cols=189 Identities=21% Similarity=0.315 Sum_probs=158.5
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
.|+++||+++|++. ...+|+|+||+|++||+++|+||||||||||+++|+|+++ .+ |+|.++|
T Consensus 2 ~i~~~nls~~~~~~-------------~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~---G~I~i~g 64 (275)
T cd03289 2 QMTVKDLTAKYTEG-------------GNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TE---GDIQIDG 64 (275)
T ss_pred eEEEEEEEEEeCCC-------------CCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CC---cEEEECC
Confidence 48899999999421 2358999999999999999999999999999999999986 32 9999999
Q ss_pred ccCCC--hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccCC-----------
Q 006897 136 HQIKK--PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAGS----------- 202 (627)
Q Consensus 136 ~~~~~--~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~----------- 202 (627)
.++.. ...+|+.++|+||++.+|+. |++||+.... ..+ .+++.++++.+||++..++
T Consensus 65 ~~i~~~~~~~lr~~i~~v~q~~~lf~~-tv~~nl~~~~-----~~~----~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~ 134 (275)
T cd03289 65 VSWNSVPLQKWRKAFGVIPQKVFIFSG-TFRKNLDPYG-----KWS----DEEIWKVAEEVGLKSVIEQFPGQLDFVLVD 134 (275)
T ss_pred EEhhhCCHHHHhhhEEEECCCcccchh-hHHHHhhhcc-----CCC----HHHHHHHHHHcCCHHHHHhCcccccceecC
Confidence 88632 35678899999999999985 9999996321 112 2457788889999764433
Q ss_pred ----cCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeec
Q 006897 203 ----FVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILS 260 (627)
Q Consensus 203 ----~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~ 260 (627)
++|||+|| ||++||+.+...+.+.|+++. .++|||++||+++ .+. .|||+++|+
T Consensus 135 ~g~~LS~G~~qrl~LaRall~~p~illlDEpts~LD~~~~~~l~~~l~~~~--~~~tii~isH~~~-~i~-~~dri~vl~ 210 (275)
T cd03289 135 GGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAF--ADCTVILSEHRIE-AML-ECQRFLVIE 210 (275)
T ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHhc--CCCEEEEEECCHH-HHH-hCCEEEEec
Confidence 67899998 999999999999999999874 4799999999997 354 599999999
Q ss_pred CCeEEeeCCHHHHHH
Q 006897 261 RGSVVHYGSLELLEE 275 (627)
Q Consensus 261 ~G~iv~~G~~~~~~~ 275 (627)
+|++++.|+++++..
T Consensus 211 ~G~i~~~g~~~~l~~ 225 (275)
T cd03289 211 ENKVRQYDSIQKLLN 225 (275)
T ss_pred CCeEeecCCHHHHhh
Confidence 999999999998754
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR) | Back alignment and domain information |
|---|
Probab=99.97 E-value=2e-31 Score=260.94 Aligned_cols=172 Identities=44% Similarity=0.700 Sum_probs=145.0
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCC--CCCCCccceEEE
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRV--RDQDFDPRSITV 133 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~--~~~~~~~G~i~i 133 (627)
.|+++||+++|+... ....+.+|+|+||++++||+++|+||||||||||+++|+|++ +|.. |+|.+
T Consensus 3 ~l~~~~ls~~~~~~~---------~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~---G~i~~ 70 (194)
T cd03213 3 TLSFRNLTVTVKSSP---------SKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVS---GEVLI 70 (194)
T ss_pred EEEEEeeEEEEecCC---------CcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCc---eEEEE
Confidence 589999999995210 001246999999999999999999999999999999999999 8754 99999
Q ss_pred CCccCCChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccCCcCCccccC---
Q 006897 134 NCHQIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAGSFVGDEENR--- 210 (627)
Q Consensus 134 ~g~~~~~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~gGe~qr--- 210 (627)
+|+++.. ...++.++|++|++.+++.+|++||+.+..... .++|||+||
T Consensus 71 ~g~~~~~-~~~~~~i~~~~q~~~~~~~~t~~~~i~~~~~~~---------------------------~LS~G~~qrv~l 122 (194)
T cd03213 71 NGRPLDK-RSFRKIIGYVPQDDILHPTLTVRETLMFAAKLR---------------------------GLSGGERKRVSI 122 (194)
T ss_pred CCEeCch-HhhhheEEEccCcccCCCCCcHHHHHHHHHHhc---------------------------cCCHHHHHHHHH
Confidence 9998543 356778999999999999899999998753210 566777776
Q ss_pred ---------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeC
Q 006897 211 ---------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYG 268 (627)
Q Consensus 211 ---------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G 268 (627)
|++|||+.+++.+.+.|+++++ +|+|+|++||+++.++.++||++++|++|++++.|
T Consensus 123 aral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~-~~~tiii~sh~~~~~~~~~~d~v~~l~~G~i~~~~ 194 (194)
T cd03213 123 ALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLAD-TGRTIICSIHQPSSEIFELFDKLLLLSQGRVIYFG 194 (194)
T ss_pred HHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCchHHHHHhcCEEEEEeCCEEEecC
Confidence 9999999999999999999975 48999999999964477899999999999998754
|
DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. |
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.2e-32 Score=272.02 Aligned_cols=194 Identities=25% Similarity=0.456 Sum_probs=154.4
Q ss_pred EEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCc
Q 006897 57 VTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCH 136 (627)
Q Consensus 57 l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~ 136 (627)
++++|++++|+. +.+.+|+|+||++++||+++|+||||||||||+++|+|+++|++ |+|.++|+
T Consensus 1 i~~~~l~~~~~~-------------~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~---G~i~~~g~ 64 (237)
T cd03252 1 ITFEHVRFRYKP-------------DGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPEN---GRVLVDGH 64 (237)
T ss_pred CEEEEEEEecCC-------------CCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCC---CEEEECCe
Confidence 478999999942 12459999999999999999999999999999999999998864 99999998
Q ss_pred cCCC--hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHH-----HHHHHHHHHc--CCcc----ccCCc
Q 006897 137 QIKK--PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKE-----DRVESLMDEL--GLTH----VAGSF 203 (627)
Q Consensus 137 ~~~~--~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~-----~~v~~~l~~l--gL~~----~~~~~ 203 (627)
++.. ...+++.++|++|++.+++ .||.||+.+... ........ ..+.++++.+ +++. ....+
T Consensus 65 ~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~----~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~L 139 (237)
T cd03252 65 DLALADPAWLRRQVGVVLQENVLFN-RSIRDNIALADP----GMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGL 139 (237)
T ss_pred ehHhcCHHHHhhcEEEEcCCchhcc-chHHHHhhccCC----CCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcC
Confidence 7532 3456778999999988875 699999987421 11111111 1234455555 4433 34567
Q ss_pred CCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEE
Q 006897 204 VGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVV 265 (627)
Q Consensus 204 ~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv 265 (627)
+|||+|| ||+|||+.++..+.+.|++++ + |+|||++||+++. + +.||++++|++|+++
T Consensus 140 SgG~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~-~~tiii~sH~~~~-~-~~~d~v~~l~~G~i~ 215 (237)
T cd03252 140 SGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDIC-A-GRTVIIIAHRLST-V-KNADRIIVMEKGRIV 215 (237)
T ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-C-CCEEEEEeCCHHH-H-HhCCEEEEEECCEEE
Confidence 7999998 999999999999999999985 3 8999999999984 5 569999999999999
Q ss_pred eeCCHHHHHH
Q 006897 266 HYGSLELLEE 275 (627)
Q Consensus 266 ~~G~~~~~~~ 275 (627)
+.|+++++.+
T Consensus 216 ~~~~~~~~~~ 225 (237)
T cd03252 216 EQGSHDELLA 225 (237)
T ss_pred EEcCHHHHHh
Confidence 9999887643
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >PRK14264 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.6e-31 Score=274.52 Aligned_cols=202 Identities=24% Similarity=0.374 Sum_probs=162.7
Q ss_pred cceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC--CCccceE
Q 006897 54 TCKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQ--DFDPRSI 131 (627)
Q Consensus 54 ~~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~--~~~~G~i 131 (627)
+.+|+++||+++|+ ++.+|+|+||+|++||+++|+||||||||||+++|+|+++|. ..+.|+|
T Consensus 43 ~~~l~i~nl~~~~~---------------~~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I 107 (305)
T PRK14264 43 DAKLSVEDLDVYYG---------------DDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSV 107 (305)
T ss_pred CceEEEEEEEEEeC---------------CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEE
Confidence 45799999999993 245999999999999999999999999999999999998631 0134999
Q ss_pred EECCccCCC----hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCC----------CCC-HHHHHHHHHHHHHHcCC
Q 006897 132 TVNCHQIKK----PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLK----------GMS-HKEKEDRVESLMDELGL 196 (627)
Q Consensus 132 ~i~g~~~~~----~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~----------~~~-~~~~~~~v~~~l~~lgL 196 (627)
.++|+++.. ...+++.++|++|++.+++. ||+||+.++...+.. +.. .+..++++.++++.+++
T Consensus 108 ~i~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l 186 (305)
T PRK14264 108 ELDGQDIYQDGVNLVELRKRVGMVFQSPNPFPK-SIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAAL 186 (305)
T ss_pred EECCEEcccccccHHHHhhceEEEccCCccccc-cHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCC
Confidence 999987632 23456789999999988874 999999987532100 111 22345678899999987
Q ss_pred cc--------ccCCcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHH
Q 006897 197 TH--------VAGSFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRIL 250 (627)
Q Consensus 197 ~~--------~~~~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~ 250 (627)
.+ ....++|||+|| ||+|||+.++..+.++|+++++ ++|||++||+++ .+.
T Consensus 187 ~~~~~~~~~~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~--~~tiiivtH~~~-~i~ 263 (305)
T PRK14264 187 WDEVNDRLDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAE--EYTVVVVTHNMQ-QAA 263 (305)
T ss_pred chhhhHHhcCccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc--CCEEEEEEcCHH-HHH
Confidence 42 234567999998 9999999999999999999975 489999999998 478
Q ss_pred HHhhhh-eeecCCeEEeeCCHHHHH
Q 006897 251 QYISKF-LILSRGSVVHYGSLELLE 274 (627)
Q Consensus 251 ~~~D~i-~vL~~G~iv~~G~~~~~~ 274 (627)
++||++ ++|++|++++.|+++++.
T Consensus 264 ~~~d~i~~~l~~G~i~~~g~~~~~~ 288 (305)
T PRK14264 264 RISDQTAVFLTGGELVEYDDTDKIF 288 (305)
T ss_pred HhcCEEEEEecCCEEEEeCCHHHHH
Confidence 899997 578999999999987764
|
|
| >CHL00131 ycf16 sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.7e-31 Score=268.38 Aligned_cols=198 Identities=21% Similarity=0.323 Sum_probs=160.4
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcC--CCCCCCccceEEE
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGR--VRDQDFDPRSITV 133 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl--~~~~~~~~G~i~i 133 (627)
+|+++||++.|+ ++.+|+|+||++++||++||+||||||||||+++|+|+ ++|+ .|+|.+
T Consensus 7 ~l~~~~l~~~~~---------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~---~G~i~~ 68 (252)
T CHL00131 7 ILEIKNLHASVN---------------ENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKIL---EGDILF 68 (252)
T ss_pred eEEEEeEEEEeC---------------CEEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCC---CceEEE
Confidence 799999999993 23599999999999999999999999999999999998 3554 399999
Q ss_pred CCccCCC--hhhhcc-cEEEEccCCCCCCCCCHHHHHHHHHHhcC--CC---CCHHHHHHHHHHHHHHcCCcc-cc----
Q 006897 134 NCHQIKK--PAQLRK-ICGFVAQEDNLLPLLTVKETLMFSANFRL--KG---MSHKEKEDRVESLMDELGLTH-VA---- 200 (627)
Q Consensus 134 ~g~~~~~--~~~~r~-~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~--~~---~~~~~~~~~v~~~l~~lgL~~-~~---- 200 (627)
+|+++.. ....++ .++|++|++.+++.+|+.+++.+...... .. ....+..+++.++++.+|+.+ ..
T Consensus 69 ~g~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 148 (252)
T CHL00131 69 KGESILDLEPEERAHLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNV 148 (252)
T ss_pred CCEEcccCChhhhheeeEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhcccc
Confidence 9988632 222233 48899999999999999999987543111 00 112234567889999999962 22
Q ss_pred C-CcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHH-hhhheeec
Q 006897 201 G-SFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQY-ISKFLILS 260 (627)
Q Consensus 201 ~-~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~-~D~i~vL~ 260 (627)
. .++|||+|| ||+|||+.++..+.++|+++++ .|+|||++||+++. +... ||++++|+
T Consensus 149 ~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~g~tii~~tH~~~~-~~~~~~d~i~~l~ 226 (252)
T CHL00131 149 NEGFSGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMT-SENSIILITHYQRL-LDYIKPDYVHVMQ 226 (252)
T ss_pred ccCCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-CCCEEEEEecCHHH-HHhhhCCEEEEEe
Confidence 2 478999998 9999999999999999999975 58999999999984 6666 89999999
Q ss_pred CCeEEeeCCHHHH
Q 006897 261 RGSVVHYGSLELL 273 (627)
Q Consensus 261 ~G~iv~~G~~~~~ 273 (627)
+|++++.|+++.+
T Consensus 227 ~G~i~~~~~~~~~ 239 (252)
T CHL00131 227 NGKIIKTGDAELA 239 (252)
T ss_pred CCEEEEecChhhh
Confidence 9999999998743
|
|
| >TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-31 Score=263.76 Aligned_cols=178 Identities=24% Similarity=0.406 Sum_probs=149.2
Q ss_pred EEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCccC
Q 006897 59 VRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQI 138 (627)
Q Consensus 59 ~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~~ 138 (627)
++||++.|+ ++.+|+|+||++++||+++|+||||||||||+++|+|+++|+. |+|.++|+++
T Consensus 1 i~~l~~~~~---------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g~~~ 62 (206)
T TIGR03608 1 LKNISKKFG---------------DKIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDS---GQVYLNGKET 62 (206)
T ss_pred CcceEEEEC---------------CEEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCC---eEEEECCEEc
Confidence 478999983 2459999999999999999999999999999999999998864 9999999884
Q ss_pred CC------hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccC----CcCCccc
Q 006897 139 KK------PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAG----SFVGDEE 208 (627)
Q Consensus 139 ~~------~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~----~~~gGe~ 208 (627)
.. ....++.++|++|++.+++.+|++||+.+..... +..+.+..++++++++.+||++..+ .++|||+
T Consensus 63 ~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~ 140 (206)
T TIGR03608 63 PPLNSKKASKFRREKLGYLFQNFALIENETVEENLDLGLKYK--KLSKKEKREKKKEALEKVGLNLKLKQKIYELSGGEQ 140 (206)
T ss_pred cccchhhHHHHHHhCeeEEecchhhccCCcHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCchhhhcCChhhCCHHHH
Confidence 21 1134678999999999999899999999865422 2334556678999999999976554 4569999
Q ss_pred cC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheee
Q 006897 209 NR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLIL 259 (627)
Q Consensus 209 qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL 259 (627)
|| ||+|||+.++..+.+.|+++++ .|.|||++||+++ ..+.||++++|
T Consensus 141 qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~sh~~~--~~~~~d~i~~l 206 (206)
T TIGR03608 141 QRVALARAILKDPPLILADEPTGSLDPKNRDEVLDLLLELND-EGKTIIIVTHDPE--VAKQADRVIEL 206 (206)
T ss_pred HHHHHHHHHHcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCHH--HHhhcCEEEeC
Confidence 98 9999999999999999999976 4899999999997 34689999875
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins. |
| >cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.5e-31 Score=259.96 Aligned_cols=169 Identities=31% Similarity=0.537 Sum_probs=143.7
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC--CCCCccceEEE
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVR--DQDFDPRSITV 133 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~--~~~~~~G~i~i 133 (627)
.|+++|+++.|+.. ..++.+|+|+||++++||+++|+||||||||||+++|+|+.+ |+ .|+|.+
T Consensus 3 ~l~~~~l~~~~~~~-----------~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~---~G~i~~ 68 (192)
T cd03232 3 VLTWKNLNYTVPVK-----------GGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVI---TGEILI 68 (192)
T ss_pred EEEEeeeEEEecCC-----------CCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCc---ceEEEE
Confidence 68999999999421 012469999999999999999999999999999999999864 43 499999
Q ss_pred CCccCCChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccCCcCCccccC---
Q 006897 134 NCHQIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAGSFVGDEENR--- 210 (627)
Q Consensus 134 ~g~~~~~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~gGe~qr--- 210 (627)
+|+++. ...++.++|++|++.+++.+|++||+.++...+ .++|||+||
T Consensus 69 ~g~~~~--~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---------------------------~LSgGe~qrv~l 119 (192)
T cd03232 69 NGRPLD--KNFQRSTGYVEQQDVHSPNLTVREALRFSALLR---------------------------GLSVEQRKRLTI 119 (192)
T ss_pred CCEehH--HHhhhceEEecccCccccCCcHHHHHHHHHHHh---------------------------cCCHHHhHHHHH
Confidence 998853 456678999999998999899999998753210 667888877
Q ss_pred ---------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecC-CeEEeeC
Q 006897 211 ---------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSR-GSVVHYG 268 (627)
Q Consensus 211 ---------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~-G~iv~~G 268 (627)
|++|||+.++..+.+.|+++++ .|+|||++||+++.++.+.||++++|++ |++++.|
T Consensus 120 a~al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~-~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~~g 192 (192)
T cd03232 120 GVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLAD-SGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192 (192)
T ss_pred HHHHhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHH-cCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEeCC
Confidence 9999999999999999999875 4899999999997336789999999999 9999865
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-31 Score=243.23 Aligned_cols=196 Identities=26% Similarity=0.425 Sum_probs=173.4
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
.|+++|+++.|+ ..++|.||+++.++||.+.++||||||||||+|.|.=+..|.+ |+..+.|
T Consensus 2 sirv~~in~~yg---------------~~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~s---g~l~ia~ 63 (242)
T COG4161 2 SIQLNGINCFYG---------------AHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRS---GTLNIAG 63 (242)
T ss_pred ceEEcccccccc---------------cchheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCC---CeEEecc
Confidence 488999999993 4568999999999999999999999999999999998877764 9999877
Q ss_pred ccCC--C------hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccCCcC---
Q 006897 136 HQIK--K------PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAGSFV--- 204 (627)
Q Consensus 136 ~~~~--~------~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~--- 204 (627)
.... + ..++|+.+|+|||+-+++|.+||.||+.-+. ++..++++++.+.++.++|+.+.|.+.+|+.+
T Consensus 64 ~~fd~s~~~~~k~i~~lr~~vgmvfqqy~lwphltv~enlieap-~kv~gl~~~qa~~~a~ellkrlrl~~~adr~plhl 142 (242)
T COG4161 64 NHFDFSKTPSDKAIRDLRRNVGMVFQQYNLWPHLTVQENLIEAP-CRVLGLSKDQALARAEKLLKRLRLKPYADRYPLHL 142 (242)
T ss_pred cccccccCccHHHHHHHHHhhhhhhhhhccCchhHHHHHHHhhh-HHHhCCCHHHHHHHHHHHHHHhccccccccCceec
Confidence 6531 1 2468899999999999999999999998753 45567788899999999999999999998765
Q ss_pred -CccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEE
Q 006897 205 -GDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVV 265 (627)
Q Consensus 205 -gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv 265 (627)
|||+|| ||++|||.-..++++++++++. .|.|-+++||..+. ..+.+.+++.|++|+|+
T Consensus 143 sggqqqrvaiaralmmkpqvllfdeptaaldpeitaqvv~iikel~~-tgitqvivthev~v-a~k~as~vvyme~g~iv 220 (242)
T COG4161 143 SGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAE-TGITQVIVTHEVEV-ARKTASRVVYMENGHIV 220 (242)
T ss_pred ccchhhhHHHHHHHhcCCcEEeecCcccccCHHHHHHHHHHHHHHHh-cCceEEEEEeehhH-HHhhhhheEeeecCeeE
Confidence 999999 9999999999999999999975 69999999999985 77899999999999999
Q ss_pred eeCCHHH
Q 006897 266 HYGSLEL 272 (627)
Q Consensus 266 ~~G~~~~ 272 (627)
+.|+.+-
T Consensus 221 e~g~a~~ 227 (242)
T COG4161 221 EQGDASC 227 (242)
T ss_pred eecchhh
Confidence 9998753
|
|
| >cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.5e-32 Score=270.10 Aligned_cols=190 Identities=24% Similarity=0.410 Sum_probs=152.0
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
.|+++|++++|+. .+.+|+|+||++++||+++|+||||||||||+++|+|+++|.+ |+|.++|
T Consensus 2 ~l~~~~l~~~~~~--------------~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g 64 (229)
T cd03254 2 EIEFENVNFSYDE--------------KKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQK---GQILIDG 64 (229)
T ss_pred eEEEEEEEEecCC--------------CCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCC---CEEEECC
Confidence 4789999999941 2358999999999999999999999999999999999998864 9999999
Q ss_pred ccCCC--hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcC-----------Cccc---
Q 006897 136 HQIKK--PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELG-----------LTHV--- 199 (627)
Q Consensus 136 ~~~~~--~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lg-----------L~~~--- 199 (627)
.++.. ...+++.++|++|++.+++. |++||+.+.... ... +++.+.++.++ ++..
T Consensus 65 ~~~~~~~~~~~~~~i~~~~q~~~~~~~-tv~~~~~~~~~~----~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 135 (229)
T cd03254 65 IDIRDISRKSLRSMIGVVLQDTFLFSG-TIMENIRLGRPN----ATD----EEVIEAAKEAGAHDFIMKLPNGYDTVLGE 135 (229)
T ss_pred EeHHHcCHHHHhhhEEEecCCchhhhh-HHHHHHhccCCC----CCH----HHHHHHHHHhChHHHHHhCcccccCHhhc
Confidence 87532 34567789999999988876 999999875211 111 22333333333 3222
Q ss_pred -cCCcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeec
Q 006897 200 -AGSFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILS 260 (627)
Q Consensus 200 -~~~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~ 260 (627)
...++|||+|| ||+|||+.++..+++.|++++ + |+|||++||+++ ++ +.||++++|+
T Consensus 136 ~~~~LS~G~~~rv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~-~~tii~~sh~~~-~~-~~~d~i~~l~ 211 (229)
T cd03254 136 NGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLM-K-GRTSIIIAHRLS-TI-KNADKILVLD 211 (229)
T ss_pred CCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-C-CCEEEEEecCHH-HH-hhCCEEEEEe
Confidence 24667999998 999999999999999999985 3 899999999998 35 4699999999
Q ss_pred CCeEEeeCCHHHHHH
Q 006897 261 RGSVVHYGSLELLEE 275 (627)
Q Consensus 261 ~G~iv~~G~~~~~~~ 275 (627)
+|++++.|+.+++.+
T Consensus 212 ~g~~~~~~~~~~~~~ 226 (229)
T cd03254 212 DGKIIEEGTHDELLA 226 (229)
T ss_pred CCeEEEeCCHHHHHh
Confidence 999999998876643
|
In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-31 Score=297.76 Aligned_cols=194 Identities=21% Similarity=0.291 Sum_probs=163.5
Q ss_pred EEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCccC
Q 006897 59 VRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQI 138 (627)
Q Consensus 59 ~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~~ 138 (627)
++||+++|+ ++.+|+|+||++++||+++|+||||||||||+|+|+|+++|++ |+|.++|+++
T Consensus 1 ~~nl~~~~~---------------~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~---G~i~~~g~~~ 62 (491)
T PRK10982 1 MSNISKSFP---------------GVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDS---GSILFQGKEI 62 (491)
T ss_pred CCceEEEeC---------------CEEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCc---eEEEECCEEC
Confidence 468999993 2469999999999999999999999999999999999999864 9999999886
Q ss_pred CC---hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCC--CCHHHHHHHHHHHHHHcCCccccC----CcCCcccc
Q 006897 139 KK---PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKG--MSHKEKEDRVESLMDELGLTHVAG----SFVGDEEN 209 (627)
Q Consensus 139 ~~---~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~--~~~~~~~~~v~~~l~~lgL~~~~~----~~~gGe~q 209 (627)
.. ....++.++|++|++.+++.+||+||+.++... ..+ .+.++..++++++++.+|+++..+ +++|||+|
T Consensus 63 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~q 141 (491)
T PRK10982 63 DFKSSKEALENGISMVHQELNLVLQRSVMDNMWLGRYP-TKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQ 141 (491)
T ss_pred CCCCHHHHHhCCEEEEecccccccCCCHHHHhhccccc-ccccccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHH
Confidence 32 123467899999999888899999999876321 111 133445567899999999976544 56799999
Q ss_pred C------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeCCHH
Q 006897 210 R------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGSLE 271 (627)
Q Consensus 210 r------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~ 271 (627)
| ||+|||+.++..+.+.|+++++ .|+|||++|||++ ++.++||++++|++|++++.|+++
T Consensus 142 rv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~g~tvii~tH~~~-~~~~~~d~i~~l~~G~i~~~~~~~ 219 (491)
T PRK10982 142 MIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKE-RGCGIVYISHKME-EIFQLCDEITILRDGQWIATQPLA 219 (491)
T ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCHH-HHHHhCCEEEEEECCEEEeecChh
Confidence 9 9999999999999999999975 5899999999998 588999999999999999999876
Q ss_pred HH
Q 006897 272 LL 273 (627)
Q Consensus 272 ~~ 273 (627)
++
T Consensus 220 ~~ 221 (491)
T PRK10982 220 GL 221 (491)
T ss_pred hC
Confidence 64
|
|
| >cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-31 Score=268.90 Aligned_cols=194 Identities=27% Similarity=0.423 Sum_probs=155.2
Q ss_pred EEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCc
Q 006897 57 VTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCH 136 (627)
Q Consensus 57 l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~ 136 (627)
|+++|++++|+.+ ++.+|+|+||++++||+++|+||||||||||+++|+|+++|+. |+|.++|+
T Consensus 1 i~~~~l~~~~~~~-------------~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~---G~i~~~g~ 64 (234)
T cd03251 1 VEFKNVTFRYPGD-------------GPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDS---GRILIDGH 64 (234)
T ss_pred CEEEEEEEEeCCC-------------CccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCC---CEEEECCE
Confidence 4789999999421 1358999999999999999999999999999999999999864 99999998
Q ss_pred cCCC--hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHH-----HHHHHHHHc--CCcccc----CCc
Q 006897 137 QIKK--PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKED-----RVESLMDEL--GLTHVA----GSF 203 (627)
Q Consensus 137 ~~~~--~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~-----~v~~~l~~l--gL~~~~----~~~ 203 (627)
++.. ....++.++|++|++.+++ .||+||+.+.... ....+..+ .+.+.++.+ ++++.. ..+
T Consensus 65 ~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~L 139 (234)
T cd03251 65 DVRDYTLASLRRQIGLVSQDVFLFN-DTVAENIAYGRPG----ATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKL 139 (234)
T ss_pred EhhhCCHHHHHhhEEEeCCCCeecc-ccHHHHhhccCCC----CCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcC
Confidence 7532 3456778999999998887 5999999875311 11121111 245556655 555433 456
Q ss_pred CCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEE
Q 006897 204 VGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVV 265 (627)
Q Consensus 204 ~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv 265 (627)
+|||+|| ||+|||+.++..+.+.|++++ + ++|||++||+++ ++.. ||++++|++|+++
T Consensus 140 S~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~-~-~~tii~~sh~~~-~~~~-~d~v~~l~~G~i~ 215 (234)
T cd03251 140 SGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQAALERLM-K-NRTTFVIAHRLS-TIEN-ADRIVVLEDGKIV 215 (234)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-C-CCEEEEEecCHH-HHhh-CCEEEEecCCeEe
Confidence 7999998 999999999999999999985 3 789999999998 4654 9999999999999
Q ss_pred eeCCHHHHHH
Q 006897 266 HYGSLELLEE 275 (627)
Q Consensus 266 ~~G~~~~~~~ 275 (627)
+.|+++++.+
T Consensus 216 ~~~~~~~~~~ 225 (234)
T cd03251 216 ERGTHEELLA 225 (234)
T ss_pred eeCCHHHHHH
Confidence 9999887654
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK15056 manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.3e-31 Score=273.12 Aligned_cols=197 Identities=19% Similarity=0.356 Sum_probs=158.2
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
+|+++||+++|++ ++.+|+|+||++++||+++|+||||||||||+|+|+|+++|+. |+|.++|
T Consensus 6 ~l~~~~l~~~~~~--------------~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~---G~i~~~g 68 (272)
T PRK15056 6 GIVVNDVTVTWRN--------------GHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLAS---GKISILG 68 (272)
T ss_pred eEEEEeEEEEecC--------------CcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCc---eEEEECC
Confidence 6999999999941 2459999999999999999999999999999999999998864 9999999
Q ss_pred ccCCChhhhcccEEEEccCCCCC--CCCCHHHHHHHHHHhc--CCCCCHHHHHHHHHHHHHHcCCccccC----CcCCcc
Q 006897 136 HQIKKPAQLRKICGFVAQEDNLL--PLLTVKETLMFSANFR--LKGMSHKEKEDRVESLMDELGLTHVAG----SFVGDE 207 (627)
Q Consensus 136 ~~~~~~~~~r~~ig~v~Q~~~l~--~~lTV~e~l~~~~~~~--~~~~~~~~~~~~v~~~l~~lgL~~~~~----~~~gGe 207 (627)
+++.. ...++.++|++|++.+. ...+++|++.++.... .......+.+++++++++.+||.+..+ .++|||
T Consensus 69 ~~i~~-~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~ 147 (272)
T PRK15056 69 QPTRQ-ALQKNLVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQ 147 (272)
T ss_pred EEhHH-hhccceEEEeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCcccCCHHH
Confidence 87531 22234699999997642 2347899987642100 001122334567888999999976554 456999
Q ss_pred ccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeCC
Q 006897 208 ENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGS 269 (627)
Q Consensus 208 ~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~ 269 (627)
+|| ||+|||+.++..+.+.|+++++ .|+|||++||+++ ++.++||+++++ +|++++.|+
T Consensus 148 ~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~-~g~tviivsH~~~-~~~~~~d~v~~~-~G~i~~~g~ 224 (272)
T PRK15056 148 KKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRD-EGKTMLVSTHNLG-SVTEFCDYTVMV-KGTVLASGP 224 (272)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCHH-HHHHhCCEEEEE-CCEEEeecC
Confidence 998 9999999999999999999975 4899999999998 488999999877 899999999
Q ss_pred HHHH
Q 006897 270 LELL 273 (627)
Q Consensus 270 ~~~~ 273 (627)
++++
T Consensus 225 ~~~~ 228 (272)
T PRK15056 225 TETT 228 (272)
T ss_pred HHhc
Confidence 8775
|
|
| >TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.5e-32 Score=313.76 Aligned_cols=190 Identities=22% Similarity=0.423 Sum_probs=159.6
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
.|+++||+|+|+. ++++|+|+|++|++||.+||+||||||||||+|+|+|+++|++ |+|.+||
T Consensus 473 ~I~~~~vsf~y~~--------------~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~---G~I~idg 535 (708)
T TIGR01193 473 DIVINDVSYSYGY--------------GSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARS---GEILLNG 535 (708)
T ss_pred cEEEEEEEEEcCC--------------CCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCC---cEEEECC
Confidence 5999999999942 2469999999999999999999999999999999999999964 9999999
Q ss_pred ccCC--ChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccc--------------
Q 006897 136 HQIK--KPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHV-------------- 199 (627)
Q Consensus 136 ~~~~--~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-------------- 199 (627)
.++. +..++|+++|||+|++.+|+. |++|||.++.. +..+ ++++.++++..|+++.
T Consensus 536 ~~i~~~~~~~lr~~i~~v~Q~~~lf~g-TI~eNi~l~~~---~~~~----~~~i~~a~~~a~l~~~i~~lp~gldt~i~e 607 (708)
T TIGR01193 536 FSLKDIDRHTLRQFINYLPQEPYIFSG-SILENLLLGAK---ENVS----QDEIWAACEIAEIKDDIENMPLGYQTELSE 607 (708)
T ss_pred EEHHHcCHHHHHHheEEEecCceehhH-HHHHHHhccCC---CCCC----HHHHHHHHHHhCCHHHHHhcccccCcEecC
Confidence 9873 356789999999999999986 99999998621 1112 3445666666665432
Q ss_pred -cCCcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeec
Q 006897 200 -AGSFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILS 260 (627)
Q Consensus 200 -~~~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~ 260 (627)
...++|||||| |||+||+.+++.+.+.|+++ .|+|+|++||+++ ..+.||+|++|+
T Consensus 608 ~G~~LSgGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~---~~~T~IiitHr~~--~~~~~D~i~~l~ 682 (708)
T TIGR01193 608 EGSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL---QDKTIIFVAHRLS--VAKQSDKIIVLD 682 (708)
T ss_pred CCCCCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh---cCCEEEEEecchH--HHHcCCEEEEEE
Confidence 13456999999 99999999999999999875 3789999999997 467899999999
Q ss_pred CCeEEeeCCHHHHHH
Q 006897 261 RGSVVHYGSLELLEE 275 (627)
Q Consensus 261 ~G~iv~~G~~~~~~~ 275 (627)
+|++++.|+++++.+
T Consensus 683 ~G~i~~~G~~~~L~~ 697 (708)
T TIGR01193 683 HGKIIEQGSHDELLD 697 (708)
T ss_pred CCEEEEECCHHHHHh
Confidence 999999999988754
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. |
| >cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-31 Score=268.00 Aligned_cols=183 Identities=25% Similarity=0.481 Sum_probs=150.8
Q ss_pred EEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCc
Q 006897 57 VTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCH 136 (627)
Q Consensus 57 l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~ 136 (627)
|+++|+++.|+. ..+.+|+|+||++++||+++|+||||||||||+++|+|+.+|+. |+|.++|+
T Consensus 3 l~~~~l~~~~~~-------------~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~---G~i~~~g~ 66 (220)
T cd03245 3 IEFRNVSFSYPN-------------QEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTS---GSVLLDGT 66 (220)
T ss_pred EEEEEEEEEcCC-------------CCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCC---CeEEECCE
Confidence 789999999942 12459999999999999999999999999999999999998864 99999998
Q ss_pred cCCC--hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCcccc--------------
Q 006897 137 QIKK--PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVA-------------- 200 (627)
Q Consensus 137 ~~~~--~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~-------------- 200 (627)
++.. ....++.++|++|++.+++ .|+.||+.+... ... .+++.++++.+++.+..
T Consensus 67 ~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~----~~~----~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~ 137 (220)
T cd03245 67 DIRQLDPADLRRNIGYVPQDVTLFY-GTLRDNITLGAP----LAD----DERILRAAELAGVTDFVNKHPNGLDLQIGER 137 (220)
T ss_pred EhHHCCHHHHHhhEEEeCCCCcccc-chHHHHhhcCCC----CCC----HHHHHHHHHHcCcHHHHHhccccccceecCC
Confidence 7532 2345678999999998887 599999976421 111 23456777888876533
Q ss_pred -CCcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecC
Q 006897 201 -GSFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSR 261 (627)
Q Consensus 201 -~~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~ 261 (627)
..++|||+|| ||+|||+.++..+.+.|+++++ ++|||++||+++. + ++||++++|++
T Consensus 138 ~~~LSgG~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tii~~sH~~~~-~-~~~d~v~~l~~ 213 (220)
T cd03245 138 GRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLG--DKTLIIITHRPSL-L-DLVDRIIVMDS 213 (220)
T ss_pred CccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcC--CCEEEEEeCCHHH-H-HhCCEEEEEeC
Confidence 3677999998 9999999999999999999864 3899999999973 4 79999999999
Q ss_pred CeEEeeC
Q 006897 262 GSVVHYG 268 (627)
Q Consensus 262 G~iv~~G 268 (627)
|++++.|
T Consensus 214 g~i~~~~ 220 (220)
T cd03245 214 GRIVADG 220 (220)
T ss_pred CeEeecC
Confidence 9998754
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. |
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.7e-31 Score=280.16 Aligned_cols=194 Identities=23% Similarity=0.382 Sum_probs=169.2
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
.++++|++|.|+ ...+++||||++++||+.||+|+||||||||+++|.|+++|++ |+|.++|
T Consensus 4 ~l~~~~itK~f~---------------~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~---GeI~v~G 65 (501)
T COG3845 4 ALEMRGITKRFP---------------GVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDS---GEIRVDG 65 (501)
T ss_pred eEEEeccEEEcC---------------CEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCc---ceEEECC
Confidence 689999999994 4579999999999999999999999999999999999999975 9999999
Q ss_pred ccCC--Ch-hhhcccEEEEccCCCCCCCCCHHHHHHHHHHhc-CCCCCHHHHHHHHHHHHHHcCCccccCC----cCCcc
Q 006897 136 HQIK--KP-AQLRKICGFVAQEDNLLPLLTVKETLMFSANFR-LKGMSHKEKEDRVESLMDELGLTHVAGS----FVGDE 207 (627)
Q Consensus 136 ~~~~--~~-~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~-~~~~~~~~~~~~v~~~l~~lgL~~~~~~----~~gGe 207 (627)
+++. ++ ...+..||+|+|+..|+|++||.||+.++.... ....+.++.+++++++.++.||+--.+. ++-||
T Consensus 66 ~~v~~~sP~dA~~~GIGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~ 145 (501)
T COG3845 66 KEVRIKSPRDAIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGE 145 (501)
T ss_pred EEeccCCHHHHHHcCCcEEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceeecCCcch
Confidence 9872 33 456778999999999999999999999986432 1234667888999999999999744444 44688
Q ss_pred ccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeCC
Q 006897 208 ENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGS 269 (627)
Q Consensus 208 ~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~ 269 (627)
||| ||+-|-|...+++++.|+++++ .|+|||++||.++ |+.++|||+.||.+|+++..-+
T Consensus 146 qQRVEIlKaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~-~G~tIi~ITHKL~-Ev~~iaDrvTVLR~Gkvvgt~~ 223 (501)
T COG3845 146 QQRVEILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAA-EGKTIIFITHKLK-EVMAIADRVTVLRRGKVVGTVD 223 (501)
T ss_pred hHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEeccHH-HHHHhhCeeEEEeCCeEEeeec
Confidence 888 9999999999999999999986 5999999999999 7999999999999999876544
|
|
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.1e-32 Score=305.47 Aligned_cols=194 Identities=26% Similarity=0.445 Sum_probs=158.5
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
.|+++||+++|++ ++++|+|+||++++||.+||+||||||||||+++|.|+++|++ |+|.+||
T Consensus 328 ~I~f~~vsf~y~~--------------~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~---G~I~idg 390 (567)
T COG1132 328 SIEFENVSFSYPG--------------KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTS---GEILIDG 390 (567)
T ss_pred eEEEEEEEEEcCC--------------CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCC---CeEEECC
Confidence 5999999999952 3469999999999999999999999999999999999999864 9999999
Q ss_pred ccCCC--hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHH-----HHHHHHc--CCcccc----CC
Q 006897 136 HQIKK--PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRV-----ESLMDEL--GLTHVA----GS 202 (627)
Q Consensus 136 ~~~~~--~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v-----~~~l~~l--gL~~~~----~~ 202 (627)
.++.+ ...+|++||+|||++.+|.. ||+|||.++.. ..++++..+.+ .+.++.+ |++... ..
T Consensus 391 ~dI~~i~~~~lr~~I~~V~Qd~~LF~~-TI~~NI~~g~~----~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~ 465 (567)
T COG1132 391 IDIRDISLDSLRKRIGIVSQDPLLFSG-TIRENIALGRP----DATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVN 465 (567)
T ss_pred EehhhcCHHHHHHhccEEcccceeecc-cHHHHHhcCCC----CCCHHHHHHHHHHhChHHHHHhCcccccceecCCCcc
Confidence 99743 57889999999999999985 99999998731 12333322222 2223333 333322 24
Q ss_pred cCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeE
Q 006897 203 FVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSV 264 (627)
Q Consensus 203 ~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~i 264 (627)
++|||||| |||+||+.+...+.+.++++. +++|+|+++|+++. + +.||+|++|++|++
T Consensus 466 LSgGQrQrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~--~~rT~iiIaHRlst-i-~~aD~IiVl~~G~i 541 (567)
T COG1132 466 LSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLL--KGRTTLIIAHRLST-I-KNADRIIVLDNGRI 541 (567)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHh--cCCEEEEEeccHhH-H-HhCCEEEEEECCEE
Confidence 56899999 899999999999999999886 36899999999984 5 45999999999999
Q ss_pred EeeCCHHHHHH
Q 006897 265 VHYGSLELLEE 275 (627)
Q Consensus 265 v~~G~~~~~~~ 275 (627)
++.|+++++..
T Consensus 542 ~e~G~h~eLl~ 552 (567)
T COG1132 542 VERGTHEELLA 552 (567)
T ss_pred EEecCHHHHHH
Confidence 99999999865
|
|
| >PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.1e-31 Score=303.29 Aligned_cols=189 Identities=24% Similarity=0.414 Sum_probs=158.4
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
.|+++||+++|++ .+.+|+|+|+++++||.++|+|+||||||||+|+|+|+++|.+ |+|.+||
T Consensus 334 ~I~~~~vsf~y~~--------------~~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~---G~I~i~g 396 (588)
T PRK13657 334 AVEFDDVSFSYDN--------------SRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQS---GRILIDG 396 (588)
T ss_pred eEEEEEEEEEeCC--------------CCceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCC---CEEEECC
Confidence 5999999999942 1358999999999999999999999999999999999999964 9999999
Q ss_pred ccCCC--hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccc--------------
Q 006897 136 HQIKK--PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHV-------------- 199 (627)
Q Consensus 136 ~~~~~--~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-------------- 199 (627)
+++.+ ...+|++|+||||++.+|+. |++||+.++. +..+ ++++.++++.+|+++.
T Consensus 397 ~~i~~~~~~~~r~~i~~v~Q~~~lf~~-Ti~~Ni~~~~----~~~~----d~~i~~al~~~~l~~~i~~lp~gldt~i~~ 467 (588)
T PRK13657 397 TDIRTVTRASLRRNIAVVFQDAGLFNR-SIEDNIRVGR----PDAT----DEEMRAAAERAQAHDFIERKPDGYDTVVGE 467 (588)
T ss_pred EEhhhCCHHHHHhheEEEecCcccccc-cHHHHHhcCC----CCCC----HHHHHHHHHHhCHHHHHHhCcccccchhcC
Confidence 98743 46788999999999999976 9999998752 1112 3345555555554321
Q ss_pred -cCCcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeec
Q 006897 200 -AGSFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILS 260 (627)
Q Consensus 200 -~~~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~ 260 (627)
...++|||+|| |||+||+.+++.+.+.|+++. .++|+|++||+++ ..+.||++++|+
T Consensus 468 ~g~~LSgGq~QRialARall~~~~iliLDEpts~LD~~t~~~i~~~l~~~~--~~~tvIiitHr~~--~~~~~D~ii~l~ 543 (588)
T PRK13657 468 RGRQLSGGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELM--KGRTTFIIAHRLS--TVRNADRILVFD 543 (588)
T ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh--cCCEEEEEEecHH--HHHhCCEEEEEE
Confidence 12466999999 999999999999999999874 3799999999996 468899999999
Q ss_pred CCeEEeeCCHHHHH
Q 006897 261 RGSVVHYGSLELLE 274 (627)
Q Consensus 261 ~G~iv~~G~~~~~~ 274 (627)
+|++++.|+.+++.
T Consensus 544 ~G~i~~~g~~~~l~ 557 (588)
T PRK13657 544 NGRVVESGSFDELV 557 (588)
T ss_pred CCEEEEeCCHHHHH
Confidence 99999999998774
|
|
| >PRK13543 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.9e-31 Score=261.69 Aligned_cols=181 Identities=17% Similarity=0.299 Sum_probs=153.1
Q ss_pred ceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEEC
Q 006897 55 CKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVN 134 (627)
Q Consensus 55 ~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~ 134 (627)
.+|+++|++++|+ ++.+++|+||++++||+++|+||||||||||+|+|+|+++|+. |+|.++
T Consensus 10 ~~l~~~~l~~~~~---------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~---G~i~~~ 71 (214)
T PRK13543 10 PLLAAHALAFSRN---------------EEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVES---GQIQID 71 (214)
T ss_pred ceEEEeeEEEecC---------------CceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCC---eeEEEC
Confidence 4799999999993 2359999999999999999999999999999999999999864 999999
Q ss_pred CccCCChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccC----CcCCccccC
Q 006897 135 CHQIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAG----SFVGDEENR 210 (627)
Q Consensus 135 g~~~~~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~----~~~gGe~qr 210 (627)
|+++.. ...++.++|++|++.+++.+|+.||+.+....+ + ...+++++++++.++|.+..+ .++|||+||
T Consensus 72 g~~i~~-~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~--~---~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr 145 (214)
T PRK13543 72 GKTATR-GDRSRFMAYLGHLPGLKADLSTLENLHFLCGLH--G---RRAKQMPGSALAIVGLAGYEDTLVRQLSAGQKKR 145 (214)
T ss_pred CEEccc-hhhhhceEEeecCcccccCCcHHHHHHHHHHhc--C---CcHHHHHHHHHHHcCChhhccCChhhCCHHHHHH
Confidence 988543 234567999999998898899999998865432 1 123456788999999876554 456999998
Q ss_pred ------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecC
Q 006897 211 ------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSR 261 (627)
Q Consensus 211 ------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~ 261 (627)
||+|||+.+++.+.+.|+++++ .|.|+|++|||++ ++.++||++++++.
T Consensus 146 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiii~sH~~~-~~~~~~~~i~~l~~ 212 (214)
T PRK13543 146 LALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLR-GGGAALVTTHGAY-AAPPVRTRMLTLEA 212 (214)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCCEEEEEecChh-hhhhhcceEEEEee
Confidence 9999999999999999999876 4899999999998 58999999998863
|
|
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.1e-31 Score=296.51 Aligned_cols=202 Identities=17% Similarity=0.309 Sum_probs=165.3
Q ss_pred ceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC-CCCccceEEE
Q 006897 55 CKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRD-QDFDPRSITV 133 (627)
Q Consensus 55 ~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~-~~~~~G~i~i 133 (627)
.+|+++||+++|+.+ +++++|+|+||+|++||++||+||||||||||+|+|+|+++| ++ |+|.+
T Consensus 258 ~~l~~~~l~~~~~~~------------~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~---G~i~~ 322 (506)
T PRK13549 258 VILEVRNLTAWDPVN------------PHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWE---GEIFI 322 (506)
T ss_pred ceEEEecCccccccc------------cccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCC---cEEEE
Confidence 479999999998311 124599999999999999999999999999999999999984 53 99999
Q ss_pred CCccCCC---hhhhcccEEEEccCC---CCCCCCCHHHHHHHHHHhcCCC---CCHHHHHHHHHHHHHHcCCc-cccC--
Q 006897 134 NCHQIKK---PAQLRKICGFVAQED---NLLPLLTVKETLMFSANFRLKG---MSHKEKEDRVESLMDELGLT-HVAG-- 201 (627)
Q Consensus 134 ~g~~~~~---~~~~r~~ig~v~Q~~---~l~~~lTV~e~l~~~~~~~~~~---~~~~~~~~~v~~~l~~lgL~-~~~~-- 201 (627)
+|+++.. ....++.+||++|++ .+++.+||.||+.++....... .++++.+++++++++.+|+. +..+
T Consensus 323 ~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 402 (506)
T PRK13549 323 DGKPVKIRNPQQAIAQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELA 402 (506)
T ss_pred CCEECCCCCHHHHHHCCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccc
Confidence 9987532 123456799999995 4788899999998763211111 12344557789999999996 4443
Q ss_pred --CcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecC
Q 006897 202 --SFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSR 261 (627)
Q Consensus 202 --~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~ 261 (627)
+++|||||| ||+|||+.++..+.++|+++++ .|+|||++|||++ ++.++|||+++|++
T Consensus 403 ~~~LSgG~kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~g~tvi~~sHd~~-~~~~~~d~v~~l~~ 480 (506)
T PRK13549 403 IARLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQ-QGVAIIVISSELP-EVLGLSDRVLVMHE 480 (506)
T ss_pred cccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHH-CCCEEEEECCCHH-HHHHhCCEEEEEEC
Confidence 566999999 9999999999999999999986 4899999999998 58899999999999
Q ss_pred CeEEeeCCHHHH
Q 006897 262 GSVVHYGSLELL 273 (627)
Q Consensus 262 G~iv~~G~~~~~ 273 (627)
|+++..|+++++
T Consensus 481 G~i~~~~~~~~~ 492 (506)
T PRK13549 481 GKLKGDLINHNL 492 (506)
T ss_pred CEEEEEeccccC
Confidence 999999887654
|
|
| >cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1 | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.4e-31 Score=267.73 Aligned_cols=196 Identities=26% Similarity=0.367 Sum_probs=153.1
Q ss_pred EEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCc
Q 006897 57 VTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCH 136 (627)
Q Consensus 57 l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~ 136 (627)
++++|+++.|+.. +++.+|+|+||++++||+++|+||||||||||+++|+|+++|++ |+|.++|.
T Consensus 1 l~i~~l~~~~~~~------------~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~---G~i~~~g~ 65 (238)
T cd03249 1 IEFKNVSFRYPSR------------PDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTS---GEILLDGV 65 (238)
T ss_pred CeEEEEEEecCCC------------CCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCC---CEEEECCE
Confidence 4789999999421 12459999999999999999999999999999999999998864 99999998
Q ss_pred cCCC--hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHH-----HHHHHHHHc--CCcc----ccCCc
Q 006897 137 QIKK--PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKED-----RVESLMDEL--GLTH----VAGSF 203 (627)
Q Consensus 137 ~~~~--~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~-----~v~~~l~~l--gL~~----~~~~~ 203 (627)
++.. ....++.++|++|++.+++ .||+||+.+.... ...++..+ .+.+.++.+ +++. ....+
T Consensus 66 ~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~L 140 (238)
T cd03249 66 DIRDLNLRWLRSQIGLVSQEPVLFD-GTIAENIRYGKPD----ATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQL 140 (238)
T ss_pred ehhhcCHHHHHhhEEEECCchhhhh-hhHHHHhhccCCC----CCHHHHHHHHHHcChHHHHHhhccccceeeccCCccC
Confidence 7532 2345677999999988886 5999999875311 11111111 123333333 3332 23466
Q ss_pred CCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEE
Q 006897 204 VGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVV 265 (627)
Q Consensus 204 ~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv 265 (627)
+|||+|| ||+|||+.++..+.+.|++++ +|+|||++||+++ ++. .||++++|++|+++
T Consensus 141 S~G~~qrv~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~--~g~~vi~~sh~~~-~~~-~~d~v~~l~~G~i~ 216 (238)
T cd03249 141 SGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQEALDRAM--KGRTTIVIAHRLS-TIR-NADLIAVLQNGQVV 216 (238)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc--CCCEEEEEeCCHH-HHh-hCCEEEEEECCEEE
Confidence 7999998 999999999999999999985 4899999999998 464 89999999999999
Q ss_pred eeCCHHHHHHH
Q 006897 266 HYGSLELLEET 276 (627)
Q Consensus 266 ~~G~~~~~~~~ 276 (627)
+.|+.+++.+.
T Consensus 217 ~~~~~~~~~~~ 227 (238)
T cd03249 217 EQGTHDELMAQ 227 (238)
T ss_pred EeCCHHHHhhc
Confidence 99998776543
|
In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. |
| >cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.3e-31 Score=253.91 Aligned_cols=172 Identities=30% Similarity=0.458 Sum_probs=133.3
Q ss_pred EEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCc
Q 006897 57 VTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCH 136 (627)
Q Consensus 57 l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~ 136 (627)
++++|++++|+ ++.+|+|+||++++||+++|+||||||||||+++|+|+++|.. |+|.++|+
T Consensus 1 l~~~~l~~~~~---------------~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~---G~i~~~g~ 62 (173)
T cd03230 1 IEVRNLSKRYG---------------KKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDS---GEIKVLGK 62 (173)
T ss_pred CEEEEEEEEEC---------------CeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCC---eEEEECCE
Confidence 46899999993 2358999999999999999999999999999999999998864 99999998
Q ss_pred cCCC-hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccCCcCCccccCCCCCC
Q 006897 137 QIKK-PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAGSFVGDEENRGISGL 215 (627)
Q Consensus 137 ~~~~-~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~gGe~qrPtsgL 215 (627)
++.. ....++.++|++|++.+++.+|+.||+.+ +..+ ++++.=+...+. + .+-++-. .||+||
T Consensus 63 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~L---------S~G~-~qrv~laral~~-~--p~illlD---EPt~~L 126 (173)
T cd03230 63 DIKKEPEEVKRRIGYLPEEPSLYENLTVRENLKL---------SGGM-KQRLALAQALLH-D--PELLILD---EPTSGL 126 (173)
T ss_pred EcccchHhhhccEEEEecCCccccCCcHHHHhhc---------CHHH-HHHHHHHHHHHc-C--CCEEEEe---CCccCC
Confidence 7532 23556789999999999998999999851 1111 111111111110 0 0000011 199999
Q ss_pred CHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeE
Q 006897 216 DSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSV 264 (627)
Q Consensus 216 D~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~i 264 (627)
|+.++..+.+.|++++++ |.|+|++||+++ ++.++||++++|++|++
T Consensus 127 D~~~~~~l~~~l~~~~~~-g~tiii~th~~~-~~~~~~d~i~~l~~g~i 173 (173)
T cd03230 127 DPESRREFWELLRELKKE-GKTILLSSHILE-EAERLCDRVAILNNGRI 173 (173)
T ss_pred CHHHHHHHHHHHHHHHHC-CCEEEEECCCHH-HHHHhCCEEEEEeCCCC
Confidence 999999999999999865 899999999998 57889999999999974
|
In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment | Back alignment and domain information |
|---|
Probab=99.97 E-value=3e-31 Score=256.19 Aligned_cols=156 Identities=31% Similarity=0.472 Sum_probs=134.0
Q ss_pred EEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCc
Q 006897 57 VTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCH 136 (627)
Q Consensus 57 l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~ 136 (627)
|+++|++++|+ ++++++|+||++++||+++|+||||||||||+|+|+|+++|++ |+|.++|+
T Consensus 1 i~~~~l~~~~~---------------~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g~ 62 (178)
T cd03229 1 LELKNVSKRYG---------------QKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDS---GSILIDGE 62 (178)
T ss_pred CEEEEEEEEEC---------------CeEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCc---eEEEECCE
Confidence 47899999993 2459999999999999999999999999999999999998864 99999998
Q ss_pred cCCC----hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccCCcCCccccC--
Q 006897 137 QIKK----PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAGSFVGDEENR-- 210 (627)
Q Consensus 137 ~~~~----~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~gGe~qr-- 210 (627)
++.. ....++.++|++|++.+++.+|++||+.+. ++|||+||
T Consensus 63 ~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~--------------------------------lS~G~~qr~~ 110 (178)
T cd03229 63 DLTDLEDELPPLRRRIGMVFQDFALFPHLTVLENIALG--------------------------------LSGGQQQRVA 110 (178)
T ss_pred EccccchhHHHHhhcEEEEecCCccCCCCCHHHheeec--------------------------------CCHHHHHHHH
Confidence 7632 235677899999999988889999998653 33444433
Q ss_pred ----------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCe
Q 006897 211 ----------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGS 263 (627)
Q Consensus 211 ----------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~ 263 (627)
||+|||+.++..+.+.|++++++.|+|+|++||+++ ++.++||++++|++|+
T Consensus 111 la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~g~ 178 (178)
T cd03229 111 LARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLD-EAARLADRVVVLRDGK 178 (178)
T ss_pred HHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEeCCC
Confidence 999999999999999999998754799999999998 4778999999999885
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13538 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.5e-31 Score=259.02 Aligned_cols=179 Identities=22% Similarity=0.360 Sum_probs=150.2
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
+|+++|++++|+ .+.+|+|+||++++||+++|+||||||||||+++|+|+++|+. |+|.++|
T Consensus 1 ~l~~~~l~~~~~---------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~---G~v~~~g 62 (204)
T PRK13538 1 MLEARNLACERD---------------ERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDA---GEVLWQG 62 (204)
T ss_pred CeEEEEEEEEEC---------------CEEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCC---cEEEECC
Confidence 478999999993 2459999999999999999999999999999999999999864 9999999
Q ss_pred ccCCC-hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccC----CcCCccccC
Q 006897 136 HQIKK-PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAG----SFVGDEENR 210 (627)
Q Consensus 136 ~~~~~-~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~----~~~gGe~qr 210 (627)
+++.. ....++.++|++|++.+++.+|+.||+.+....+ + .+.+++++++++.+||++..+ .++|||+||
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~--~---~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qr 137 (204)
T PRK13538 63 EPIRRQRDEYHQDLLYLGHQPGIKTELTALENLRFYQRLH--G---PGDDEALWEALAQVGLAGFEDVPVRQLSAGQQRR 137 (204)
T ss_pred EEcccchHHhhhheEEeCCccccCcCCcHHHHHHHHHHhc--C---ccHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHH
Confidence 88632 2345678999999999999899999999875432 1 123467889999999976554 456999998
Q ss_pred ------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheee
Q 006897 211 ------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLIL 259 (627)
Q Consensus 211 ------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL 259 (627)
||+|||+.++..+.+.|+++++ .|.|||++|||++. +....+|++++
T Consensus 138 l~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiii~sh~~~~-i~~~~~~~~~~ 202 (204)
T PRK13538 138 VALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAE-QGGMVILTTHQDLP-VASDKVRKLRL 202 (204)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHH-CCCEEEEEecChhh-hccCCceEEec
Confidence 9999999999999999999975 48899999999984 66655677666
|
|
| >PRK03695 vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.8e-31 Score=267.62 Aligned_cols=179 Identities=24% Similarity=0.366 Sum_probs=150.4
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCccCCC--hhhhcccEEEEccCCCCCCCCCH
Q 006897 86 ILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKK--PAQLRKICGFVAQEDNLLPLLTV 163 (627)
Q Consensus 86 iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~~~~--~~~~r~~ig~v~Q~~~l~~~lTV 163 (627)
+|+|+||++++||+++|+||||||||||+++|+|+.++ .|+|.++|+++.. ....++.++|++|++.+++.+|+
T Consensus 11 ~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~~----~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv 86 (248)
T PRK03695 11 RLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPG----SGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPV 86 (248)
T ss_pred eecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC----CeEEEECCEecCcCCHHHHhhheEEecccCccCCCccH
Confidence 69999999999999999999999999999999999853 3999999988632 33456679999999888888999
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccC----CcCCccccC-------------------------CCCC
Q 006897 164 KETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAG----SFVGDEENR-------------------------GISG 214 (627)
Q Consensus 164 ~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~----~~~gGe~qr-------------------------Ptsg 214 (627)
+||+.+.... ....++..++++++++.+||.+..+ .++|||+|| ||+|
T Consensus 87 ~~nl~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~~~~~~p~p~llllDEPt~~ 163 (248)
T PRK03695 87 FQYLTLHQPD---KTRTEAVASALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNS 163 (248)
T ss_pred HHHHHhcCcc---CCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhccccccCCCCCEEEEcCCccc
Confidence 9999886321 1233445678899999999976544 455777643 7899
Q ss_pred CCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeCCHHHH
Q 006897 215 LDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGSLELL 273 (627)
Q Consensus 215 LD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~ 273 (627)
||+.++..+.++|+++++ +|+|||++||+++ ++.++||++++|++|++++.|+.+++
T Consensus 164 LD~~~~~~l~~~L~~~~~-~~~tvi~~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~ 220 (248)
T PRK03695 164 LDVAQQAALDRLLSELCQ-QGIAVVMSSHDLN-HTLRHADRVWLLKQGKLLASGRRDEV 220 (248)
T ss_pred CCHHHHHHHHHHHHHHHh-CCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEECCHHHH
Confidence 999999999999999975 4899999999998 58899999999999999999998765
|
|
| >PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-30 Score=265.99 Aligned_cols=181 Identities=24% Similarity=0.417 Sum_probs=152.4
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
+|+++||++.|+ ++.+|+|+||++++||+++|+||||||||||+|+|+|+++|++ |+|.++|
T Consensus 4 ~l~~~~l~~~~~---------------~~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~---G~i~~~~ 65 (251)
T PRK09544 4 LVSLENVSVSFG---------------QRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDE---GVIKRNG 65 (251)
T ss_pred EEEEeceEEEEC---------------CceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCc---eEEEECC
Confidence 799999999993 2359999999999999999999999999999999999999864 9999876
Q ss_pred ccCCChhhhcccEEEEccCCCCCCC--CCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccC----CcCCcccc
Q 006897 136 HQIKKPAQLRKICGFVAQEDNLLPL--LTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAG----SFVGDEEN 209 (627)
Q Consensus 136 ~~~~~~~~~r~~ig~v~Q~~~l~~~--lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~----~~~gGe~q 209 (627)
+..++|++|++.+++. .|+.+++.+. .+. .++++.++++.+||.+..+ .++|||+|
T Consensus 66 ---------~~~i~~v~q~~~~~~~l~~~~~~~~~~~-----~~~----~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~q 127 (251)
T PRK09544 66 ---------KLRIGYVPQKLYLDTTLPLTVNRFLRLR-----PGT----KKEDILPALKRVQAGHLIDAPMQKLSGGETQ 127 (251)
T ss_pred ---------ccCEEEeccccccccccChhHHHHHhcc-----ccc----cHHHHHHHHHHcCChHHHhCChhhCCHHHHH
Confidence 2359999999877765 3788876542 111 1345788999999976554 45699999
Q ss_pred C------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeCCHH
Q 006897 210 R------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGSLE 271 (627)
Q Consensus 210 r------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~ 271 (627)
| ||+|||+.++..+.+.|++++++.|+|||++||+++ ++.+.||++++|++ ++++.|+++
T Consensus 128 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~-~i~~~~d~i~~l~~-~i~~~g~~~ 205 (251)
T PRK09544 128 RVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLH-LVMAKTDEVLCLNH-HICCSGTPE 205 (251)
T ss_pred HHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEECC-ceEeeCCHH
Confidence 8 999999999999999999997655899999999998 58899999999965 799999988
Q ss_pred HHH
Q 006897 272 LLE 274 (627)
Q Consensus 272 ~~~ 274 (627)
++.
T Consensus 206 ~~~ 208 (251)
T PRK09544 206 VVS 208 (251)
T ss_pred HHh
Confidence 763
|
|
| >TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.5e-31 Score=300.73 Aligned_cols=191 Identities=23% Similarity=0.348 Sum_probs=161.1
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
.|+++||+++|++. ++.+|+|+||++++||.++|+|+||||||||+|+|+|+++|.+ |+|.+||
T Consensus 330 ~i~~~~v~f~y~~~-------------~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~---G~I~i~g 393 (571)
T TIGR02203 330 DVEFRNVTFRYPGR-------------DRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDS---GQILLDG 393 (571)
T ss_pred eEEEEEEEEEcCCC-------------CCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCC---CeEEECC
Confidence 59999999999421 2469999999999999999999999999999999999999864 9999999
Q ss_pred ccCC--ChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCcccc-------------
Q 006897 136 HQIK--KPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVA------------- 200 (627)
Q Consensus 136 ~~~~--~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~------------- 200 (627)
.++. +..+++++++||||++.+|+. |++|||.++. + ++..+++++++++.+|+++..
T Consensus 394 ~~i~~~~~~~~~~~i~~v~Q~~~lf~~-Ti~~Ni~~~~----~---~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~ 465 (571)
T TIGR02203 394 HDLADYTLASLRRQVALVSQDVVLFND-TIANNIAYGR----T---EQADRAEIERALAAAYAQDFVDKLPLGLDTPIGE 465 (571)
T ss_pred EeHHhcCHHHHHhhceEEccCcccccc-cHHHHHhcCC----C---CCCCHHHHHHHHHHcChHHHHHhCcCcccceecC
Confidence 8863 346788999999999999986 9999998752 1 112245566777777664321
Q ss_pred --CCcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeec
Q 006897 201 --GSFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILS 260 (627)
Q Consensus 201 --~~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~ 260 (627)
..++|||||| |||+||+.+++.+++.|+++. .++|+|++||+++ ..+.||+|++|+
T Consensus 466 ~g~~LSgGqrQRiaLARall~~~~illLDEpts~LD~~~~~~i~~~L~~~~--~~~tiIiitH~~~--~~~~~D~ii~l~ 541 (571)
T TIGR02203 466 NGVLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLM--QGRTTLVIAHRLS--TIEKADRIVVMD 541 (571)
T ss_pred CCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHh--CCCEEEEEehhhH--HHHhCCEEEEEe
Confidence 2356999999 999999999999999999885 3689999999996 578899999999
Q ss_pred CCeEEeeCCHHHHH
Q 006897 261 RGSVVHYGSLELLE 274 (627)
Q Consensus 261 ~G~iv~~G~~~~~~ 274 (627)
+|++++.|+.+++.
T Consensus 542 ~g~i~~~g~~~~l~ 555 (571)
T TIGR02203 542 DGRIVERGTHNELL 555 (571)
T ss_pred CCEEEeeCCHHHHH
Confidence 99999999998874
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. |
| >COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.6e-32 Score=248.32 Aligned_cols=174 Identities=24% Similarity=0.412 Sum_probs=153.8
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCccCC--ChhhhcccEEEEccCCCCCC
Q 006897 82 VPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIK--KPAQLRKICGFVAQEDNLLP 159 (627)
Q Consensus 82 ~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~~~--~~~~~r~~ig~v~Q~~~l~~ 159 (627)
++.++|+++||++++||..+|+||||||||||+|+++-++.|++ |++++.|+++. +++.+|++|+|+.|.+.+|+
T Consensus 14 ~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~---G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg 90 (223)
T COG4619 14 GDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTS---GTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFG 90 (223)
T ss_pred CCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCC---ceEEEcCccccccChHHHHHHHHHHHcCccccc
Confidence 34579999999999999999999999999999999999999974 99999999974 36789999999999999998
Q ss_pred CCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccc-----cCCcCCccccC------------------CCCCCC
Q 006897 160 LLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHV-----AGSFVGDEENR------------------GISGLD 216 (627)
Q Consensus 160 ~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-----~~~~~gGe~qr------------------PtsgLD 216 (627)
. ||+||+.|+-.+|... ..+++..+.|+++++.+. ...++|||+|| |||+||
T Consensus 91 ~-tVeDNlifP~~~r~rr----~dr~aa~~llar~~l~~~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~TsALD 165 (223)
T COG4619 91 D-TVEDNLIFPWQIRNRR----PDRAAALDLLARFALPDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALD 165 (223)
T ss_pred c-chhhccccchHHhccC----CChHHHHHHHHHcCCchhhhcchhhhccchHHHHHHHHHHhhcCCceEEecCchhhcC
Confidence 7 9999999987666432 245667889999998753 34567999999 899999
Q ss_pred HHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeE
Q 006897 217 STSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSV 264 (627)
Q Consensus 217 ~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~i 264 (627)
+.+++.|-++|.++.++++.+++++|||.+ +..+.+|+++-+..|++
T Consensus 166 ~~nkr~ie~mi~~~v~~q~vAv~WiTHd~d-qa~rha~k~itl~~G~~ 212 (223)
T COG4619 166 ESNKRNIEEMIHRYVREQNVAVLWITHDKD-QAIRHADKVITLQPGHA 212 (223)
T ss_pred hhhHHHHHHHHHHHhhhhceEEEEEecChH-HHhhhhheEEEeccCcc
Confidence 999999999999999888999999999998 47899999999999875
|
|
| >TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.2e-31 Score=305.46 Aligned_cols=191 Identities=23% Similarity=0.432 Sum_probs=158.9
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
.|+++||+++|++ +++.+|+|+||++++||.+||+|+||||||||+|+|+|+++|++ |+|.+||
T Consensus 455 ~i~~~~vsf~y~~-------------~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~---G~I~idg 518 (694)
T TIGR01846 455 AITFENIRFRYAP-------------DSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQH---GQVLVDG 518 (694)
T ss_pred eEEEEEEEEEcCC-------------CCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCC---ceEEECC
Confidence 5999999999942 22459999999999999999999999999999999999999864 9999999
Q ss_pred ccCC--ChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccc--------------
Q 006897 136 HQIK--KPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHV-------------- 199 (627)
Q Consensus 136 ~~~~--~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-------------- 199 (627)
.++. +..++|+.++||+|++.+|+. |++|||.++. +..+ ++++.++++..|+++.
T Consensus 519 ~~i~~~~~~~~r~~i~~v~q~~~lf~~-ti~eNi~~~~----~~~~----~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~ 589 (694)
T TIGR01846 519 VDLAIADPAWLRRQMGVVLQENVLFSR-SIRDNIALCN----PGAP----FEHVIHAAKLAGAHDFISELPQGYNTEVGE 589 (694)
T ss_pred EehhhCCHHHHHHhCeEEccCCeehhh-hHHHHHhcCC----CCCC----HHHHHHHHHHcChHHHHHhCcCccCcEecC
Confidence 9874 346789999999999999986 9999998742 1122 3345555555554332
Q ss_pred -cCCcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeec
Q 006897 200 -AGSFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILS 260 (627)
Q Consensus 200 -~~~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~ 260 (627)
...++|||+|| ||++||+.+++.+.+.|+++. .++|+|++||+++. .+.||++++|+
T Consensus 590 ~g~~LSgGq~qri~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~--~~~~d~ii~l~ 665 (694)
T TIGR01846 590 KGANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREIC--RGRTVIIIAHRLST--VRACDRIIVLE 665 (694)
T ss_pred CCCCCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHh--CCCEEEEEeCChHH--HHhCCEEEEEe
Confidence 23456999999 999999999999999999984 47999999999973 46799999999
Q ss_pred CCeEEeeCCHHHHHH
Q 006897 261 RGSVVHYGSLELLEE 275 (627)
Q Consensus 261 ~G~iv~~G~~~~~~~ 275 (627)
+|++++.|+++++.+
T Consensus 666 ~G~i~~~g~~~~l~~ 680 (694)
T TIGR01846 666 KGQIAESGRHEELLA 680 (694)
T ss_pred CCEEEEeCCHHHHHH
Confidence 999999999988754
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >PRK09580 sufC cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.7e-30 Score=262.77 Aligned_cols=199 Identities=22% Similarity=0.338 Sum_probs=157.8
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCC--CCCCCccceEEE
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRV--RDQDFDPRSITV 133 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~--~~~~~~~G~i~i 133 (627)
+|+++||+++|+ ++.+|+|+||+|++||+++|+||||||||||+++|+|++ +|+ .|+|.+
T Consensus 1 ~i~~~nl~~~~~---------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~---~G~i~~ 62 (248)
T PRK09580 1 MLSIKDLHVSVE---------------DKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVT---GGTVEF 62 (248)
T ss_pred CeEEEEEEEEeC---------------CeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCC---ceEEEE
Confidence 478999999993 235999999999999999999999999999999999995 464 399999
Q ss_pred CCccCCC--hhh-hcccEEEEccCCCCCCCCCHHHHHHHHHH-hcC-CC---CCHHHHHHHHHHHHHHcCCc-ccc----
Q 006897 134 NCHQIKK--PAQ-LRKICGFVAQEDNLLPLLTVKETLMFSAN-FRL-KG---MSHKEKEDRVESLMDELGLT-HVA---- 200 (627)
Q Consensus 134 ~g~~~~~--~~~-~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~-~~~-~~---~~~~~~~~~v~~~l~~lgL~-~~~---- 200 (627)
+|+++.. ... .++.++|++|++.+++.+|+.+++.+... ... .. ....+..++++++++.+++. +..
T Consensus 63 ~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 142 (248)
T PRK09580 63 KGKDLLELSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSV 142 (248)
T ss_pred CCCccccCCHHHHhhcceEEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCC
Confidence 9987632 222 23579999999988888887777654321 110 00 11223456788899999984 222
Q ss_pred -CCcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHH-hhhheeec
Q 006897 201 -GSFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQY-ISKFLILS 260 (627)
Q Consensus 201 -~~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~-~D~i~vL~ 260 (627)
..++|||+|| ||+|||+.++..+.+.|+++++ .|+|||++|||++. +... +|++++|+
T Consensus 143 ~~~LS~G~~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~-~~~tiii~sH~~~~-~~~~~~d~i~~l~ 220 (248)
T PRK09580 143 NVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRD-GKRSFIIVTHYQRI-LDYIKPDYVHVLY 220 (248)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCHHH-HHhhhCCEEEEEE
Confidence 2578999998 9999999999999999999975 58999999999984 6666 89999999
Q ss_pred CCeEEeeCCHHHHH
Q 006897 261 RGSVVHYGSLELLE 274 (627)
Q Consensus 261 ~G~iv~~G~~~~~~ 274 (627)
+|++++.|+++.+.
T Consensus 221 ~g~i~~~g~~~~~~ 234 (248)
T PRK09580 221 QGRIVKSGDFTLVK 234 (248)
T ss_pred CCeEEEeCCHHHHH
Confidence 99999999988553
|
|
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.8e-31 Score=294.14 Aligned_cols=194 Identities=16% Similarity=0.380 Sum_probs=160.6
Q ss_pred ceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEEC
Q 006897 55 CKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVN 134 (627)
Q Consensus 55 ~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~ 134 (627)
.+|+++|+++.|. .+|+|+||++++||+++|+||||||||||+|+|+|+++|++ |+|.++
T Consensus 264 ~~l~~~~l~~~~~-----------------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~---G~I~~~ 323 (510)
T PRK09700 264 TVFEVRNVTSRDR-----------------KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAG---GEIRLN 323 (510)
T ss_pred cEEEEeCccccCC-----------------CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCC---CeEEEC
Confidence 4799999998651 28999999999999999999999999999999999999864 999999
Q ss_pred CccCCC--h-hhhcccEEEEccC---CCCCCCCCHHHHHHHHHHhc---CC---C-CCHHHHHHHHHHHHHHcCCc-ccc
Q 006897 135 CHQIKK--P-AQLRKICGFVAQE---DNLLPLLTVKETLMFSANFR---LK---G-MSHKEKEDRVESLMDELGLT-HVA 200 (627)
Q Consensus 135 g~~~~~--~-~~~r~~ig~v~Q~---~~l~~~lTV~e~l~~~~~~~---~~---~-~~~~~~~~~v~~~l~~lgL~-~~~ 200 (627)
|+++.. . ...++.+|||+|+ ..+++.+||.||+.++...+ .. + ...++.+++++++++.+||. +..
T Consensus 324 g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~ 403 (510)
T PRK09700 324 GKDISPRSPLDAVKKGMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSV 403 (510)
T ss_pred CEECCCCCHHHHHHCCcEEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCc
Confidence 987532 1 2356789999998 46888999999998753211 00 1 12233446788999999996 554
Q ss_pred C----CcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhhee
Q 006897 201 G----SFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLI 258 (627)
Q Consensus 201 ~----~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~v 258 (627)
+ .++|||||| ||+|||+.++..++++|+++++ .|+|||++|||++ ++.++|||+++
T Consensus 404 ~~~~~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~-~g~tvi~vsHd~~-~~~~~~d~i~~ 481 (510)
T PRK09700 404 NQNITELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLAD-DGKVILMVSSELP-EIITVCDRIAV 481 (510)
T ss_pred cCccccCChHHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHH-CCCEEEEEcCCHH-HHHhhCCEEEE
Confidence 4 456999999 9999999999999999999976 4899999999998 58899999999
Q ss_pred ecCCeEEeeCCH
Q 006897 259 LSRGSVVHYGSL 270 (627)
Q Consensus 259 L~~G~iv~~G~~ 270 (627)
|++|++++.++.
T Consensus 482 l~~G~i~~~~~~ 493 (510)
T PRK09700 482 FCEGRLTQILTN 493 (510)
T ss_pred EECCEEEEEecC
Confidence 999999988765
|
|
| >cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-30 Score=253.16 Aligned_cols=155 Identities=23% Similarity=0.405 Sum_probs=134.7
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
+|+++|++++| +|+|+||++++||+++|+||||||||||+++|+|+++|++ |+|.++|
T Consensus 4 ~l~~~~l~~~~-------------------~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g 61 (182)
T cd03215 4 VLEVRGLSVKG-------------------AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPAS---GEITLDG 61 (182)
T ss_pred EEEEeccEEEe-------------------eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCC---ceEEECC
Confidence 69999999877 6999999999999999999999999999999999999864 9999999
Q ss_pred ccCCC---hhhhcccEEEEccCC---CCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccCCcCCcccc
Q 006897 136 HQIKK---PAQLRKICGFVAQED---NLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAGSFVGDEEN 209 (627)
Q Consensus 136 ~~~~~---~~~~r~~ig~v~Q~~---~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~gGe~q 209 (627)
+++.. ....++.++|++|++ .+++.+|++||+.+... ++|||+|
T Consensus 62 ~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~t~~e~l~~~~~------------------------------LS~G~~q 111 (182)
T cd03215 62 KPVTRRSPRDAIRAGIAYVPEDRKREGLVLDLSVAENIALSSL------------------------------LSGGNQQ 111 (182)
T ss_pred EECCccCHHHHHhCCeEEecCCcccCcccCCCcHHHHHHHHhh------------------------------cCHHHHH
Confidence 88643 224567899999984 57888999999987531 4455555
Q ss_pred C------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeE
Q 006897 210 R------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSV 264 (627)
Q Consensus 210 r------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~i 264 (627)
| |++|||+.++..+.+.|+++++ .|+|+|++||+++ ++.++||++++|++|++
T Consensus 112 rl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~~tiii~sh~~~-~~~~~~d~v~~l~~G~i 182 (182)
T cd03215 112 KVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELAD-AGKAVLLISSELD-ELLGLCDRILVMYEGRI 182 (182)
T ss_pred HHHHHHHHccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCHH-HHHHhCCEEEEecCCcC
Confidence 5 9999999999999999999975 4899999999998 58899999999999974
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.8e-30 Score=247.52 Aligned_cols=211 Identities=25% Similarity=0.349 Sum_probs=177.9
Q ss_pred ceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEEC
Q 006897 55 CKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVN 134 (627)
Q Consensus 55 ~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~ 134 (627)
.+|+++||+++..+ +++||++||++|++||+.+|+||||||||||.++|+|.-. ...+.|+|.++
T Consensus 2 ~~L~I~dLhv~v~~--------------~keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~-Y~Vt~G~I~~~ 66 (251)
T COG0396 2 MMLEIKDLHVEVEG--------------KKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPK-YEVTEGEILFD 66 (251)
T ss_pred ceeEEeeeEEEecC--------------chhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCC-ceEecceEEEC
Confidence 37999999999832 1479999999999999999999999999999999999853 34466999999
Q ss_pred CccCCC---hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHHHcCCcc-ccCCc-----C
Q 006897 135 CHQIKK---PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGM-SHKEKEDRVESLMDELGLTH-VAGSF-----V 204 (627)
Q Consensus 135 g~~~~~---~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~-~~~~~~~~v~~~l~~lgL~~-~~~~~-----~ 204 (627)
|+++.+ .++.|..+..-+|.|.=+|..|+.+.|..+...+.... ...+..+++++.++.+++++ .+++. +
T Consensus 67 GedI~~l~~~ERAr~GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~GFS 146 (251)
T COG0396 67 GEDILELSPDERARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVNEGFS 146 (251)
T ss_pred CcccccCCHhHHHhcCCEEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccCCCcC
Confidence 999854 35677889999999999999999999998765432110 12466788999999999986 45554 4
Q ss_pred CccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHh--hhheeecCCeE
Q 006897 205 GDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYI--SKFLILSRGSV 264 (627)
Q Consensus 205 gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~--D~i~vL~~G~i 264 (627)
||||+| |=||||..+-+.+-+.+.+++. .|.+++++||... +.++. |++.+|.+|+|
T Consensus 147 GGEkKR~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~-~~~~~liITHy~r--ll~~i~pD~vhvl~~GrI 223 (251)
T COG0396 147 GGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALRE-EGRGVLIITHYQR--LLDYIKPDKVHVLYDGRI 223 (251)
T ss_pred cchHHHHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhc-CCCeEEEEecHHH--HHhhcCCCEEEEEECCEE
Confidence 999999 7799999999999999999976 5999999999875 67877 99999999999
Q ss_pred EeeCCHHHHHHHHHhcCCCC
Q 006897 265 VHYGSLELLEETINNLGYQI 284 (627)
Q Consensus 265 v~~G~~~~~~~~~~~~g~~~ 284 (627)
+..|.+ ++.+.+++.||.+
T Consensus 224 v~sG~~-el~~~le~~gy~~ 242 (251)
T COG0396 224 VKSGDP-ELAEELEEKGYDW 242 (251)
T ss_pred EecCCH-HHHHHHHHhchHH
Confidence 999999 8888888888864
|
|
| >TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.5e-31 Score=300.19 Aligned_cols=192 Identities=22% Similarity=0.383 Sum_probs=159.8
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
.|+++||+++|+++ .++.+|+|+||++++||.++|+||||||||||+|+|+|+++|.+ |+|.+||
T Consensus 337 ~i~~~~v~f~y~~~------------~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~---G~I~i~g 401 (576)
T TIGR02204 337 EIEFEQVNFAYPAR------------PDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQS---GRILLDG 401 (576)
T ss_pred eEEEEEEEEECCCC------------CCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCC---CEEEECC
Confidence 58999999999531 12469999999999999999999999999999999999999864 9999999
Q ss_pred ccCC--ChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccc--------------
Q 006897 136 HQIK--KPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHV-------------- 199 (627)
Q Consensus 136 ~~~~--~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-------------- 199 (627)
.++. +...+++.++|+||++.+|+. |++|||.++. +..+ +++++++++.+|+.+.
T Consensus 402 ~~i~~~~~~~~~~~i~~~~Q~~~lf~~-Ti~~Ni~~~~----~~~~----~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~ 472 (576)
T TIGR02204 402 VDLRQLDPAELRARMALVPQDPVLFAA-SVMENIRYGR----PDAT----DEEVEAAARAAHAHEFISALPEGYDTYLGE 472 (576)
T ss_pred EEHHhcCHHHHHHhceEEccCCccccc-cHHHHHhcCC----CCCC----HHHHHHHHHHcCcHHHHHhCCCCCCceeCC
Confidence 8864 346788899999999999976 9999998752 1112 3456666666665422
Q ss_pred -cCCcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeec
Q 006897 200 -AGSFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILS 260 (627)
Q Consensus 200 -~~~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~ 260 (627)
...++|||+|| |||+||+.+++.+++.|+++. .++|+|++||+++ ..+.||++++|+
T Consensus 473 ~g~~LSgGq~Qrl~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~~~--~~~t~IiitH~~~--~~~~~d~vi~l~ 548 (576)
T TIGR02204 473 RGVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLM--KGRTTLIIAHRLA--TVLKADRIVVMD 548 (576)
T ss_pred CCCcCCHHHHHHHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHh--CCCEEEEEecchH--HHHhCCEEEEEE
Confidence 22356999998 999999999999999999985 3799999999996 467899999999
Q ss_pred CCeEEeeCCHHHHHH
Q 006897 261 RGSVVHYGSLELLEE 275 (627)
Q Consensus 261 ~G~iv~~G~~~~~~~ 275 (627)
+|++++.|+++++.+
T Consensus 549 ~g~~~~~g~~~~l~~ 563 (576)
T TIGR02204 549 QGRIVAQGTHAELIA 563 (576)
T ss_pred CCEEEeeecHHHHHH
Confidence 999999999887643
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. |
| >cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=99.97 E-value=6e-31 Score=262.87 Aligned_cols=184 Identities=23% Similarity=0.350 Sum_probs=149.7
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
.|+++|++++|+. .++.+|+|+||++++||+++|+||||||||||+++|+|+.+|.. |+|.++|
T Consensus 2 ~l~~~~l~~~~~~-------------~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g 65 (221)
T cd03244 2 DIEFKNVSLRYRP-------------NLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSS---GSILIDG 65 (221)
T ss_pred cEEEEEEEEecCC-------------CCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCC---CEEEECC
Confidence 3789999999942 12469999999999999999999999999999999999998864 9999999
Q ss_pred ccCCC--hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccc--------------
Q 006897 136 HQIKK--PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHV-------------- 199 (627)
Q Consensus 136 ~~~~~--~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-------------- 199 (627)
.++.. ...+++.++|++|++.+++ .|++||+.+.. ... .+++.+.++.+++.+.
T Consensus 66 ~~~~~~~~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~-----~~~----~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~ 135 (221)
T cd03244 66 VDISKIGLHDLRSRISIIPQDPVLFS-GTIRSNLDPFG-----EYS----DEELWQALERVGLKEFVESLPGGLDTVVEE 135 (221)
T ss_pred EEhHhCCHHHHhhhEEEECCCCcccc-chHHHHhCcCC-----CCC----HHHHHHHHHHhCcHHHHHhccccccccccc
Confidence 87532 3456788999999998876 59999996431 111 2345556666665432
Q ss_pred -cCCcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeec
Q 006897 200 -AGSFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILS 260 (627)
Q Consensus 200 -~~~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~ 260 (627)
...++|||+|| ||+|||+.++..+.+.|+++.+ +.|||++||+++ ++. .||++++|+
T Consensus 136 ~~~~LS~G~~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tii~~sh~~~-~~~-~~d~i~~l~ 211 (221)
T cd03244 136 GGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREAFK--DCTVLTIAHRLD-TII-DSDRILVLD 211 (221)
T ss_pred CCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcC--CCEEEEEeCCHH-HHh-hCCEEEEEE
Confidence 24566999998 9999999999999999999853 689999999998 465 599999999
Q ss_pred CCeEEeeCC
Q 006897 261 RGSVVHYGS 269 (627)
Q Consensus 261 ~G~iv~~G~ 269 (627)
+|++++.|+
T Consensus 212 ~g~~~~~~~ 220 (221)
T cd03244 212 KGRVVEFDS 220 (221)
T ss_pred CCeEEecCC
Confidence 999998875
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.5e-31 Score=264.06 Aligned_cols=193 Identities=26% Similarity=0.421 Sum_probs=151.8
Q ss_pred EEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCc
Q 006897 57 VTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCH 136 (627)
Q Consensus 57 l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~ 136 (627)
|+++|++++|+. .+.+|+|+||++++||+++|+||||||||||+++|+|+.+|+. |+|.++|+
T Consensus 1 l~~~~l~~~~~~--------------~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~---G~v~~~g~ 63 (236)
T cd03253 1 IEFENVTFAYDP--------------GRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSS---GSILIDGQ 63 (236)
T ss_pred CEEEEEEEEeCC--------------CCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCC---CEEEECCE
Confidence 478999999931 2358999999999999999999999999999999999998864 99999998
Q ss_pred cCCC--hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHH-----HHHHHHHHc--CCcc----ccCCc
Q 006897 137 QIKK--PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKED-----RVESLMDEL--GLTH----VAGSF 203 (627)
Q Consensus 137 ~~~~--~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~-----~v~~~l~~l--gL~~----~~~~~ 203 (627)
++.. ...+++.++|++|++.+++ .|++||+.+... .....+..+ .+.+.++.+ +++. ....+
T Consensus 64 ~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~----~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~L 138 (236)
T cd03253 64 DIREVTLDSLRRAIGVVPQDTVLFN-DTIGYNIRYGRP----DATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKL 138 (236)
T ss_pred EhhhCCHHHHHhhEEEECCCChhhc-chHHHHHhhcCC----CCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcC
Confidence 7532 3456778999999998886 599999987531 111111111 123333333 3332 23467
Q ss_pred CCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEE
Q 006897 204 VGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVV 265 (627)
Q Consensus 204 ~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv 265 (627)
+|||+|| ||+|||+.++..+.+.|++++ + |+|||++||+++. +. .||++++|++|+++
T Consensus 139 S~G~~~rl~la~aL~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~-~~tiii~sh~~~~-~~-~~d~~~~l~~g~i~ 214 (236)
T cd03253 139 SGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALRDVS-K-GRTTIVIAHRLST-IV-NADKIIVLKDGRIV 214 (236)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-C-CCEEEEEcCCHHH-HH-hCCEEEEEECCEEE
Confidence 7999998 999999999999999999985 4 8999999999984 64 59999999999999
Q ss_pred eeCCHHHHHH
Q 006897 266 HYGSLELLEE 275 (627)
Q Consensus 266 ~~G~~~~~~~ 275 (627)
+.|+.+++.+
T Consensus 215 ~~~~~~~~~~ 224 (236)
T cd03253 215 ERGTHEELLA 224 (236)
T ss_pred eeCCHHHHhh
Confidence 9998876643
|
Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-30 Score=256.67 Aligned_cols=175 Identities=22% Similarity=0.321 Sum_probs=149.1
Q ss_pred EEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCc
Q 006897 57 VTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCH 136 (627)
Q Consensus 57 l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~ 136 (627)
|+++||++.|+ ++.+|+|+||+|++||++||+|+||||||||+++|+|+++|++ |+|.++|+
T Consensus 1 l~i~~l~~~~~---------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g~ 62 (201)
T cd03231 1 LEADELTCERD---------------GRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLA---GRVLLNGG 62 (201)
T ss_pred CEEEEEEEEeC---------------CceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---cEEEECCE
Confidence 47899999993 2458999999999999999999999999999999999998864 99999998
Q ss_pred cCCC-hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccCC----cCCccccC-
Q 006897 137 QIKK-PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAGS----FVGDEENR- 210 (627)
Q Consensus 137 ~~~~-~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~----~~gGe~qr- 210 (627)
++.. ...+++.++|++|++.+++.+|++||+.+.... ..+++++++++.+|+.+..++ ++|||+||
T Consensus 63 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~--------~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl 134 (201)
T cd03231 63 PLDFQRDSIARGLLYLGHAPGIKTTLSVLENLRFWHAD--------HSDEQVEEALARVGLNGFEDRPVAQLSAGQQRRV 134 (201)
T ss_pred ecccccHHhhhheEEeccccccCCCcCHHHHHHhhccc--------ccHHHHHHHHHHcCChhhhcCchhhCCHHHHHHH
Confidence 8532 245677899999999888889999999875311 124568899999999765544 56999998
Q ss_pred -----------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheee
Q 006897 211 -----------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLIL 259 (627)
Q Consensus 211 -----------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL 259 (627)
||+|||+.++..+.+.|+++++ .|.|+|++||++. ++...||+++++
T Consensus 135 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~g~tiii~sH~~~-~~~~~~~~~~~~ 198 (201)
T cd03231 135 ALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCA-RGGMVVLTTHQDL-GLSEAGARELDL 198 (201)
T ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCch-hhhhccceeEec
Confidence 9999999999999999999875 4899999999988 478899999877
|
The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. |
| >cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1) | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-30 Score=258.51 Aligned_cols=182 Identities=20% Similarity=0.317 Sum_probs=149.6
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
.|+++|++++|+.. .+.+|+|+||++++||+++|+||||||||||+++|+|+++|.+ |+|.++|
T Consensus 6 ~l~~~~l~~~~~~~-------------~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~---G~i~~~g 69 (207)
T cd03369 6 EIEVENLSVRYAPD-------------LPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEE---GKIEIDG 69 (207)
T ss_pred eEEEEEEEEEeCCC-------------CcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCC---CeEEECC
Confidence 58999999999421 2358999999999999999999999999999999999998864 9999999
Q ss_pred ccCCC--hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccCCcCCccccC---
Q 006897 136 HQIKK--PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAGSFVGDEENR--- 210 (627)
Q Consensus 136 ~~~~~--~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~gGe~qr--- 210 (627)
+++.. ..+.++.++|++|++.+++. |++||+.+.. .... +++.+.++ ++.....++|||+||
T Consensus 70 ~~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~~~l~~~~-----~~~~----~~~~~~l~---~~~~~~~LS~G~~qrv~l 136 (207)
T cd03369 70 IDISTIPLEDLRSSLTIIPQDPTLFSG-TIRSNLDPFD-----EYSD----EEIYGALR---VSEGGLNLSQGQRQLLCL 136 (207)
T ss_pred EEhHHCCHHHHHhhEEEEecCCcccCc-cHHHHhcccC-----CCCH----HHHHHHhh---ccCCCCcCCHHHHHHHHH
Confidence 87532 33467789999999988874 9999996531 1121 22344444 556667888999998
Q ss_pred ---------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeCCH
Q 006897 211 ---------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGSL 270 (627)
Q Consensus 211 ---------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~ 270 (627)
||+|||+.++..+.++|+++. .|+|+|++||+++. +.. ||++++|++|+++..|++
T Consensus 137 aral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~--~~~tiii~th~~~~-~~~-~d~v~~l~~g~i~~~g~~ 207 (207)
T cd03369 137 ARALLKRPRVLVLDEATASIDYATDALIQKTIREEF--TNSTILTIAHRLRT-IID-YDKILVMDAGEVKEYDHP 207 (207)
T ss_pred HHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhc--CCCEEEEEeCCHHH-Hhh-CCEEEEEECCEEEecCCC
Confidence 999999999999999999984 38999999999984 554 999999999999988753
|
NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. |
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.3e-31 Score=291.75 Aligned_cols=189 Identities=24% Similarity=0.313 Sum_probs=158.8
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
+|+++||+++|+ ++.+|+|+||++++||+++|+||||||||||+|+|+|+++|++ |+|.++|
T Consensus 3 ~l~~~~l~~~~~---------------~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~---G~i~~~~ 64 (490)
T PRK10938 3 SLQISQGTFRLS---------------DTKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLS---GERQSQF 64 (490)
T ss_pred eEEEEeEEEEcC---------------CeeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCC---ceEEECC
Confidence 699999999993 2359999999999999999999999999999999999998864 9999998
Q ss_pred ccCCC--hhhhcccEEEEccCCCC--C-C-----CCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccC----
Q 006897 136 HQIKK--PAQLRKICGFVAQEDNL--L-P-----LLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAG---- 201 (627)
Q Consensus 136 ~~~~~--~~~~r~~ig~v~Q~~~l--~-~-----~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~---- 201 (627)
.++.. ....++.+||++|++.. + + .+||+|++.+. .+.+++++++++.+||++..+
T Consensus 65 ~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~l~~~~l~~~~~~~~~ 134 (490)
T PRK10938 65 SHITRLSFEQLQKLVSDEWQRNNTDMLSPGEDDTGRTTAEIIQDE----------VKDPARCEQLAQQFGITALLDRRFK 134 (490)
T ss_pred cccccCCHHHHHHHhceeccCcchhhcccchhhccccHHHhcccc----------hhHHHHHHHHHHHcCCHhhhhCCcc
Confidence 76532 23455679999998642 1 1 46888887542 123467889999999976544
Q ss_pred CcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCe
Q 006897 202 SFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGS 263 (627)
Q Consensus 202 ~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~ 263 (627)
+++|||+|| ||+|||+.++..+.+.|++++++ |+|||++|||++ ++.++||++++|++|+
T Consensus 135 ~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-g~tvii~tH~~~-~~~~~~d~v~~l~~G~ 212 (490)
T PRK10938 135 YLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQS-GITLVLVLNRFD-EIPDFVQFAGVLADCT 212 (490)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHhhCCEEEEEECCE
Confidence 556999999 99999999999999999999764 899999999998 5889999999999999
Q ss_pred EEeeCCHHHHH
Q 006897 264 VVHYGSLELLE 274 (627)
Q Consensus 264 iv~~G~~~~~~ 274 (627)
++..|+++++.
T Consensus 213 i~~~~~~~~~~ 223 (490)
T PRK10938 213 LAETGEREEIL 223 (490)
T ss_pred EEEeCCHHHHh
Confidence 99999987653
|
|
| >cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-30 Score=255.87 Aligned_cols=171 Identities=25% Similarity=0.366 Sum_probs=140.0
Q ss_pred EEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCC--CCCCCccceEEEC
Q 006897 57 VTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRV--RDQDFDPRSITVN 134 (627)
Q Consensus 57 l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~--~~~~~~~G~i~i~ 134 (627)
|+++|++++|+ ++.+|+|+||++++||+++|+||||||||||+++|+|+. +|+ .|+|.++
T Consensus 1 l~~~~l~~~~~---------------~~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~---~G~i~~~ 62 (200)
T cd03217 1 LEIKDLHVSVG---------------GKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVT---EGEILFK 62 (200)
T ss_pred CeEEEEEEEeC---------------CEEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCC---ccEEEEC
Confidence 47899999993 235999999999999999999999999999999999994 554 3999999
Q ss_pred CccCCC--hhh-hcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccCCcCCccccC-
Q 006897 135 CHQIKK--PAQ-LRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAGSFVGDEENR- 210 (627)
Q Consensus 135 g~~~~~--~~~-~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~gGe~qr- 210 (627)
|+++.. ... .++.++|++|++.+++.+++++++.- ....++|||+||
T Consensus 63 g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~l~~-----------------------------~~~~LS~G~~qrv 113 (200)
T cd03217 63 GEDITDLPPEERARLGIFLAFQYPPEIPGVKNADFLRY-----------------------------VNEGFSGGEKKRN 113 (200)
T ss_pred CEECCcCCHHHHhhCcEEEeecChhhccCccHHHHHhh-----------------------------ccccCCHHHHHHH
Confidence 998643 122 24569999999999998899888711 012345666655
Q ss_pred -----------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHH-HhhhheeecCCeEEeeCCHHH
Q 006897 211 -----------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQ-YISKFLILSRGSVVHYGSLEL 272 (627)
Q Consensus 211 -----------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~-~~D~i~vL~~G~iv~~G~~~~ 272 (627)
||+|||+.++..+.+.|+++++ .|+|||++||+++ .+.+ +||++++|++|++++.|+.+
T Consensus 114 ~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~-~~~tiii~sh~~~-~~~~~~~d~i~~l~~G~i~~~~~~~- 190 (200)
T cd03217 114 EILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLRE-EGKSVLIITHYQR-LLDYIKPDRVHVLYDGRIVKSGDKE- 190 (200)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHH-CCCEEEEEecCHH-HHHHhhCCEEEEEECCEEEEEccHH-
Confidence 9999999999999999999975 4899999999998 4666 79999999999999999554
Q ss_pred HHHHH
Q 006897 273 LEETI 277 (627)
Q Consensus 273 ~~~~~ 277 (627)
+.+++
T Consensus 191 ~~~~~ 195 (200)
T cd03217 191 LALEI 195 (200)
T ss_pred HHhhh
Confidence 44444
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. |
| >TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-30 Score=294.12 Aligned_cols=196 Identities=26% Similarity=0.433 Sum_probs=158.6
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
.++++|++++|++ +++++|+|+||++++||.++|+||||||||||+++|+|+++|++ |+|.++|
T Consensus 316 ~i~~~~v~~~y~~-------------~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~---G~i~~~g 379 (544)
T TIGR01842 316 HLSVENVTIVPPG-------------GKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTS---GSVRLDG 379 (544)
T ss_pred eEEEEEEEEEcCC-------------CCccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---ceEEECC
Confidence 5999999999942 22468999999999999999999999999999999999999864 9999999
Q ss_pred ccCCC--hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHH-----HHHHHHHHc--CCccc----cCC
Q 006897 136 HQIKK--PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKED-----RVESLMDEL--GLTHV----AGS 202 (627)
Q Consensus 136 ~~~~~--~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~-----~v~~~l~~l--gL~~~----~~~ 202 (627)
.++.+ ...+|+.++||+|++.+|+. |++||+.+.. +..+.++..+ .+++.++.+ |++.. ...
T Consensus 380 ~~i~~~~~~~~~~~i~~v~q~~~lf~~-ti~~Ni~~~~----~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~ 454 (544)
T TIGR01842 380 ADLKQWDRETFGKHIGYLPQDVELFPG-TVAENIARFG----ENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGAT 454 (544)
T ss_pred EehhhCCHHHHhhheEEecCCcccccc-cHHHHHhccC----CCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCC
Confidence 88643 45678899999999999986 9999998542 1122222211 223444444 44432 345
Q ss_pred cCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeE
Q 006897 203 FVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSV 264 (627)
Q Consensus 203 ~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~i 264 (627)
++|||+|| ||++||+.++..+.+.|+++.. .|+|+|++||+++ ..+.||++++|++|++
T Consensus 455 LSgGq~qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~-~~~tvi~ith~~~--~~~~~d~i~~l~~G~i 531 (544)
T TIGR01842 455 LSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKA-RGITVVVITHRPS--LLGCVDKILVLQDGRI 531 (544)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCccccCHHHHHHHHHHHHHHhh-CCCEEEEEeCCHH--HHHhCCEEEEEECCEE
Confidence 67999999 9999999999999999999853 4799999999997 3578999999999999
Q ss_pred EeeCCHHHHHH
Q 006897 265 VHYGSLELLEE 275 (627)
Q Consensus 265 v~~G~~~~~~~ 275 (627)
++.|+++++.+
T Consensus 532 ~~~g~~~~l~~ 542 (544)
T TIGR01842 532 ARFGERDEVLA 542 (544)
T ss_pred EeeCCHHHHhh
Confidence 99999887753
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >PRK13546 teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.8e-30 Score=260.41 Aligned_cols=203 Identities=19% Similarity=0.292 Sum_probs=164.2
Q ss_pred ceEEEEeEEEEEccCcccccc----c-ccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccc
Q 006897 55 CKVTVRNLSYAIQPNTSILSH----L-LHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPR 129 (627)
Q Consensus 55 ~~l~~~nls~~y~~~~~~~~~----~-~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G 129 (627)
+.++++||++.|+..+....+ + .......+.+|+|+||+|++||+++|+||||||||||+++|+|+++|+. |
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~---G 79 (264)
T PRK13546 3 VSVNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTV---G 79 (264)
T ss_pred ceEEEeeeEEEEEecccchHHHHHHhhhhccCCceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCc---e
Confidence 358999999999764211000 1 1112345679999999999999999999999999999999999999864 9
Q ss_pred eEEECCccCCChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccC----CcCC
Q 006897 130 SITVNCHQIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAG----SFVG 205 (627)
Q Consensus 130 ~i~i~g~~~~~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~----~~~g 205 (627)
+|.++|+ +++++|+..+.+.+|+.||+.+..... +.+.++..+.++++++.++|.+..+ .++|
T Consensus 80 ~I~~~g~-----------~~~~~~~~~~~~~~tv~enl~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~ 146 (264)
T PRK13546 80 KVDRNGE-----------VSVIAISAGLSGQLTGIENIEFKMLCM--GFKRKEIKAMTPKIIEFSELGEFIYQPVKKYSS 146 (264)
T ss_pred EEEECCE-----------EeEEecccCCCCCCcHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHcCCchhhcCCcccCCH
Confidence 9999884 356778777778899999998764332 2344555667788899999876554 4669
Q ss_pred ccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEee
Q 006897 206 DEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHY 267 (627)
Q Consensus 206 Ge~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~ 267 (627)
||+|| ||+|||+.++..+++.|.++++ .|+|||++||+++ ++.++||++++|++|++++.
T Consensus 147 Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~-~g~tiIiisH~~~-~i~~~~d~i~~l~~G~i~~~ 224 (264)
T PRK13546 147 GMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKE-QNKTIFFVSHNLG-QVRQFCTKIAWIEGGKLKDY 224 (264)
T ss_pred HHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHH-CCCEEEEEcCCHH-HHHHHcCEEEEEECCEEEEe
Confidence 99998 9999999999999999999965 5899999999998 48889999999999999999
Q ss_pred CCHHHHHH
Q 006897 268 GSLELLEE 275 (627)
Q Consensus 268 G~~~~~~~ 275 (627)
|+.+++.+
T Consensus 225 g~~~~~~~ 232 (264)
T PRK13546 225 GELDDVLP 232 (264)
T ss_pred CCHHHHHH
Confidence 99887754
|
|
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-30 Score=290.74 Aligned_cols=201 Identities=17% Similarity=0.276 Sum_probs=164.0
Q ss_pred ceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC-CCCccceEEE
Q 006897 55 CKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRD-QDFDPRSITV 133 (627)
Q Consensus 55 ~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~-~~~~~G~i~i 133 (627)
.+|+++|++++|..+ +++.+|+|+||++++||+++|+||||||||||+|+|+|+++| ++ |+|.+
T Consensus 256 ~~l~~~~l~~~~~~~------------~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~---G~i~~ 320 (500)
T TIGR02633 256 VILEARNLTCWDVIN------------PHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFE---GNVFI 320 (500)
T ss_pred ceEEEeCCccccccc------------ccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCC---eEEEE
Confidence 479999999988311 123589999999999999999999999999999999999985 43 99999
Q ss_pred CCccCCC---hhhhcccEEEEccCC---CCCCCCCHHHHHHHHHHhcCC---CCCHHHHHHHHHHHHHHcCCcc-ccC--
Q 006897 134 NCHQIKK---PAQLRKICGFVAQED---NLLPLLTVKETLMFSANFRLK---GMSHKEKEDRVESLMDELGLTH-VAG-- 201 (627)
Q Consensus 134 ~g~~~~~---~~~~r~~ig~v~Q~~---~l~~~lTV~e~l~~~~~~~~~---~~~~~~~~~~v~~~l~~lgL~~-~~~-- 201 (627)
+|+++.. ...+++++|||+|+. .+++.+||+||+.++...... .....+.+++++++++.+++.+ ..+
T Consensus 321 ~g~~~~~~~~~~~~~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 400 (500)
T TIGR02633 321 NGKPVDIRNPAQAIRAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLP 400 (500)
T ss_pred CCEECCCCCHHHHHhCCCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCc
Confidence 9988632 134567899999995 588899999999885321111 1123345577899999999963 343
Q ss_pred --CcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecC
Q 006897 202 --SFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSR 261 (627)
Q Consensus 202 --~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~ 261 (627)
.++|||||| ||+|||+.++..++++|++++++ |.|||++|||++ ++.++||++++|++
T Consensus 401 ~~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~-g~tviivsHd~~-~~~~~~d~v~~l~~ 478 (500)
T TIGR02633 401 IGRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQE-GVAIIVVSSELA-EVLGLSDRVLVIGE 478 (500)
T ss_pred cccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhC-CCEEEEECCCHH-HHHHhCCEEEEEEC
Confidence 567999999 99999999999999999999764 899999999998 58899999999999
Q ss_pred CeEEeeCCHHH
Q 006897 262 GSVVHYGSLEL 272 (627)
Q Consensus 262 G~iv~~G~~~~ 272 (627)
|+++..++.++
T Consensus 479 G~i~~~~~~~~ 489 (500)
T TIGR02633 479 GKLKGDFVNHA 489 (500)
T ss_pred CEEEEEEcccc
Confidence 99998776543
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >PRK13539 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.7e-30 Score=254.65 Aligned_cols=177 Identities=24% Similarity=0.417 Sum_probs=147.8
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
+|+++||+++|+ ++.+|+|+||+|++||+++|+||||||||||+++|+|+.+|++ |+|.++|
T Consensus 2 ~l~~~~l~~~~~---------------~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g 63 (207)
T PRK13539 2 MLEGEDLACVRG---------------GRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAA---GTIKLDG 63 (207)
T ss_pred EEEEEeEEEEEC---------------CeEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---ceEEECC
Confidence 689999999993 2459999999999999999999999999999999999998864 9999999
Q ss_pred ccCCChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccC----CcCCccccC-
Q 006897 136 HQIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAG----SFVGDEENR- 210 (627)
Q Consensus 136 ~~~~~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~----~~~gGe~qr- 210 (627)
+++... ..++.++|++|++.+++.+|++||+.+....+ +. .++++.++++.+||.+..+ .++|||+||
T Consensus 64 ~~~~~~-~~~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~--~~----~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl 136 (207)
T PRK13539 64 GDIDDP-DVAEACHYLGHRNAMKPALTVAENLEFWAAFL--GG----EELDIAAALEAVGLAPLAHLPFGYLSAGQKRRV 136 (207)
T ss_pred EeCcch-hhHhhcEEecCCCcCCCCCcHHHHHHHHHHhc--CC----cHHHHHHHHHHcCCHHHHcCChhhcCHHHHHHH
Confidence 874322 26778999999988888899999998865332 11 1245889999999976544 456999998
Q ss_pred -----------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecC
Q 006897 211 -----------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSR 261 (627)
Q Consensus 211 -----------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~ 261 (627)
||+|||+.++..+.+.|+++++ +|+|||++||+++ ++.. |+++-++.
T Consensus 137 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiii~sH~~~-~~~~--~~~~~~~~ 200 (207)
T PRK13539 137 ALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLA-QGGIVIAATHIPL-GLPG--ARELDLGP 200 (207)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCch-hhcc--CcEEeecC
Confidence 9999999999999999999876 4899999999998 3554 88877744
|
|
| >PRK10535 macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.4e-29 Score=288.26 Aligned_cols=199 Identities=23% Similarity=0.417 Sum_probs=167.5
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
+|+++|++++|+.. ++.+.+|+|+||++++||+++|+||||||||||+|+|+|+++|++ |+|.++|
T Consensus 4 ~l~~~nl~~~y~~~-----------~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~---G~i~~~g 69 (648)
T PRK10535 4 LLELKDIRRSYPSG-----------EEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTS---GTYRVAG 69 (648)
T ss_pred EEEEeeEEEEeCCC-----------CCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCC---eEEEECC
Confidence 79999999999421 123469999999999999999999999999999999999999864 9999999
Q ss_pred ccCCC--hhh---h-cccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccC----CcCC
Q 006897 136 HQIKK--PAQ---L-RKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAG----SFVG 205 (627)
Q Consensus 136 ~~~~~--~~~---~-r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~----~~~g 205 (627)
+++.. .++ . ++.++|++|++.+++.+|+.||+.+.... .+...++.++++.++++.+||++..+ +++|
T Consensus 70 ~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~--~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LS~ 147 (648)
T PRK10535 70 QDVATLDADALAQLRREHFGFIFQRYHLLSHLTAAQNVEVPAVY--AGLERKQRLLRAQELLQRLGLEDRVEYQPSQLSG 147 (648)
T ss_pred EEcCcCCHHHHHHHHhccEEEEeCCcccCCCCCHHHHHHHHHHH--cCCCHHHHHHHHHHHHHHCCChhhhcCCcccCCH
Confidence 98643 222 2 46899999999999999999999986532 22344566778999999999987554 4569
Q ss_pred ccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEee
Q 006897 206 DEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHY 267 (627)
Q Consensus 206 Ge~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~ 267 (627)
||+|| |++|||+.+++.+.++|+++++ .|+|+|++||+++. .+.|||+++|++|++++.
T Consensus 148 Gq~qrv~LAraL~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~-~g~tilivsH~~~~--~~~~d~i~~l~~G~i~~~ 224 (648)
T PRK10535 148 GQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRD-RGHTVIIVTHDPQV--AAQAERVIEIRDGEIVRN 224 (648)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEECCCHHH--HHhCCEEEEEECCEEEee
Confidence 99998 9999999999999999999975 58999999999973 467999999999999999
Q ss_pred CCHHHH
Q 006897 268 GSLELL 273 (627)
Q Consensus 268 G~~~~~ 273 (627)
|++++.
T Consensus 225 g~~~~~ 230 (648)
T PRK10535 225 PPAQEK 230 (648)
T ss_pred cCcccc
Confidence 987643
|
|
| >cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.1e-30 Score=259.58 Aligned_cols=180 Identities=24% Similarity=0.384 Sum_probs=148.3
Q ss_pred EEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCc
Q 006897 57 VTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCH 136 (627)
Q Consensus 57 l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~ 136 (627)
+.++|++++|. .+++|+|+||++++||+++|+||||||||||+++|+|+++|+. |+|.++|+
T Consensus 23 l~~~~~~~~~~---------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~---G~i~~~g~ 84 (224)
T cd03220 23 LGILGRKGEVG---------------EFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDS---GTVTVRGR 84 (224)
T ss_pred hhhhhhhhhcC---------------CeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCc---eEEEECCE
Confidence 67888888883 3569999999999999999999999999999999999998864 99999998
Q ss_pred cCCChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccC----CcCCccccC--
Q 006897 137 QIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAG----SFVGDEENR-- 210 (627)
Q Consensus 137 ~~~~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~----~~~gGe~qr-- 210 (627)
++.. . .+...+.+.+||+||+.+..... +....+.++++.++++.+||++..+ .++|||+||
T Consensus 85 ~~~~---~-------~~~~~~~~~~tv~enl~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ 152 (224)
T cd03220 85 VSSL---L-------GLGGGFNPELTGRENIYLNGRLL--GLSRKEIDEKIDEIIEFSELGDFIDLPVKTYSSGMKARLA 152 (224)
T ss_pred Echh---h-------cccccCCCCCcHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHH
Confidence 6311 1 11233456789999999875432 2234455667889999999976554 456999998
Q ss_pred ----------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeC
Q 006897 211 ----------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYG 268 (627)
Q Consensus 211 ----------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G 268 (627)
||+|||+.++..+.+.|++++++ |+|||++||+++ ++.++||++++|++|++++.|
T Consensus 153 laral~~~p~llllDEP~~gLD~~~~~~~~~~l~~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~g 224 (224)
T cd03220 153 FAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQ-GKTVILVSHDPS-SIKRLCDRALVLEKGKIRFDG 224 (224)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCHH-HHHHhCCEEEEEECCEEEecC
Confidence 99999999999999999999764 899999999998 588899999999999998765
|
Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2. |
| >PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.2e-30 Score=293.53 Aligned_cols=191 Identities=21% Similarity=0.359 Sum_probs=158.5
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
.|+++|++++|+. +++.+|+|+|+++++||.++|+||||||||||+++|+|+++|++ |+|.+||
T Consensus 313 ~I~~~~v~~~y~~-------------~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~---G~i~~~g 376 (569)
T PRK10789 313 ELDVNIRQFTYPQ-------------TDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSE---GDIRFHD 376 (569)
T ss_pred cEEEEEEEEECCC-------------CCCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCC---CEEEECC
Confidence 5899999999942 22468999999999999999999999999999999999999864 9999999
Q ss_pred ccCCC--hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccc--------------
Q 006897 136 HQIKK--PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHV-------------- 199 (627)
Q Consensus 136 ~~~~~--~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-------------- 199 (627)
+++.+ ...+|+.++||+|++.+|+. |++||+.++. +..+ +++++++++..++++.
T Consensus 377 ~~~~~~~~~~~~~~i~~v~q~~~lf~~-ti~~Ni~~~~----~~~~----~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~ 447 (569)
T PRK10789 377 IPLTKLQLDSWRSRLAVVSQTPFLFSD-TVANNIALGR----PDAT----QQEIEHVARLASVHDDILRLPQGYDTEVGE 447 (569)
T ss_pred EEHhhCCHHHHHhheEEEccCCeeccc-cHHHHHhcCC----CCCC----HHHHHHHHHHcCCHHHHHhCcCcccceecC
Confidence 98632 45788999999999999986 9999998752 1112 2345555665555321
Q ss_pred -cCCcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeec
Q 006897 200 -AGSFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILS 260 (627)
Q Consensus 200 -~~~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~ 260 (627)
...++|||+|| ||++||+.+++.+.+.|+++. .|+|+|++||+++ ..+.||++++|+
T Consensus 448 ~g~~LSgGq~qRi~lARall~~~~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tii~itH~~~--~~~~~d~i~~l~ 523 (569)
T PRK10789 448 RGVMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWG--EGRTVIISAHRLS--ALTEASEILVMQ 523 (569)
T ss_pred CCCcCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHHh--CCCEEEEEecchh--HHHcCCEEEEEe
Confidence 23466999999 999999999999999999985 4799999999997 357799999999
Q ss_pred CCeEEeeCCHHHHHH
Q 006897 261 RGSVVHYGSLELLEE 275 (627)
Q Consensus 261 ~G~iv~~G~~~~~~~ 275 (627)
+|++++.|+.+++.+
T Consensus 524 ~G~i~~~g~~~~l~~ 538 (569)
T PRK10789 524 HGHIAQRGNHDQLAQ 538 (569)
T ss_pred CCEEEEecCHHHHHH
Confidence 999999999987753
|
|
| >TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.5e-30 Score=256.51 Aligned_cols=190 Identities=24% Similarity=0.367 Sum_probs=151.1
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEEC-
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVN- 134 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~- 134 (627)
+|+++||+++|+.+. +.+.++.+|+|+||++++||+++|+||||||||||+++|+|+++|+. |+|.++
T Consensus 1 ml~~~~l~~~~~~~~--------~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~---G~i~~~~ 69 (224)
T TIGR02324 1 LLEVEDLSKTFTLHQ--------QGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDS---GRILVRH 69 (224)
T ss_pred CEEEEeeEEEeeccc--------CCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---CeEEEec
Confidence 478999999995311 00012469999999999999999999999999999999999998864 999998
Q ss_pred -Cc--cCCC--hh---hh-cccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccc-c----
Q 006897 135 -CH--QIKK--PA---QL-RKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHV-A---- 200 (627)
Q Consensus 135 -g~--~~~~--~~---~~-r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~---- 200 (627)
|+ ++.. .. +. ++.+||++|++.+++.+||.||+.+..... +..+++..+++.++++.+||.+. .
T Consensus 70 ~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 147 (224)
T TIGR02324 70 EGAWVDLAQASPREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLER--GVPREAARARARELLARLNIPERLWHLPP 147 (224)
T ss_pred CCCccchhhcCHHHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHcCCchhhhhCCc
Confidence 42 3211 11 22 357999999999999999999998864321 23344556778999999999652 2
Q ss_pred CCcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeec
Q 006897 201 GSFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILS 260 (627)
Q Consensus 201 ~~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~ 260 (627)
..++|||+|| ||+|||+.++..+.+.|+++++ .|+|||++||+++ .+.++||+++.+.
T Consensus 148 ~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~g~tii~vsH~~~-~~~~~~d~i~~~~ 223 (224)
T TIGR02324 148 ATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKA-RGAALIGIFHDEE-VRELVADRVMDVT 223 (224)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCHH-HHHHhcceeEecC
Confidence 3466999998 9999999999999999999975 4899999999987 4778999998763
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. |
| >COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.9e-31 Score=258.40 Aligned_cols=176 Identities=24% Similarity=0.426 Sum_probs=155.9
Q ss_pred eceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCccCCCh------hhhcccEEEEccCCCCCCCC
Q 006897 88 KSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKKP------AQLRKICGFVAQEDNLLPLL 161 (627)
Q Consensus 88 ~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~~~~~------~~~r~~ig~v~Q~~~l~~~l 161 (627)
=+++|+.+.-.++||-|+||||||||+|+|+|+.+|++ |.|.+||+-+.+. ..-+|+|||||||..+||.+
T Consensus 15 l~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPde---G~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~ 91 (352)
T COG4148 15 LDANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDE---GRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHY 91 (352)
T ss_pred EEEeccCCCCceEEEecCCCCChhhHHHHHhccCCccc---cEEEECCEEeecccCCcccChhhheeeeEeeccccccce
Confidence 46788888867999999999999999999999999975 9999999876331 23468899999999999999
Q ss_pred CHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccCCc----CCccccC------------------CCCCCCHHH
Q 006897 162 TVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAGSF----VGDEENR------------------GISGLDSTS 219 (627)
Q Consensus 162 TV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~----~gGe~qr------------------PtsgLD~~~ 219 (627)
||+.||.|+... ......+++.+.+|++++.+++ +|||||| |++.||-..
T Consensus 92 tVrgNL~YG~~~--------~~~~~fd~iv~lLGI~hLL~R~P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~R 163 (352)
T COG4148 92 TVRGNLRYGMWK--------SMRAQFDQLVALLGIEHLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPR 163 (352)
T ss_pred EEecchhhhhcc--------cchHhHHHHHHHhCcHHHHhhCCCccCcchhhHHHHHHHHhcCCCeeeecCchhhcccch
Confidence 999999998531 1345678899999999887655 5999999 999999999
Q ss_pred HHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeCCHHHHHH
Q 006897 220 ALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGSLELLEE 275 (627)
Q Consensus 220 ~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~~ 275 (627)
+.+++-.|.+++++.+.-|+.+||.++ |+.+++|++++|++|++.+.|+.+++..
T Consensus 164 K~EilpylERL~~e~~IPIlYVSHS~~-Ev~RLAd~vV~le~GkV~A~g~~e~v~~ 218 (352)
T COG4148 164 KREILPYLERLRDEINIPILYVSHSLD-EVLRLADRVVVLENGKVKASGPLEEVWG 218 (352)
T ss_pred hhHHHHHHHHHHHhcCCCEEEEecCHH-HHHhhhheEEEecCCeEEecCcHHHHhc
Confidence 999999999999999999999999998 7999999999999999999999998754
|
|
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-29 Score=260.40 Aligned_cols=207 Identities=25% Similarity=0.395 Sum_probs=179.3
Q ss_pred ceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCC--CccceEE
Q 006897 55 CKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQD--FDPRSIT 132 (627)
Q Consensus 55 ~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~--~~~G~i~ 132 (627)
..|+++||++.|... ++...++++|||++++||.+||+|+||||||-..+.++|+++... .-+|+|.
T Consensus 5 ~lL~v~nLsV~f~~~-----------~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~ 73 (534)
T COG4172 5 PLLSIRNLSVAFHQE-----------GGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSIL 73 (534)
T ss_pred cceeeeccEEEEecC-----------CcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeE
Confidence 479999999999532 356789999999999999999999999999999999999987532 2349999
Q ss_pred ECCccCCC--hhhh---c-ccEEEEccCC--CCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCcc------
Q 006897 133 VNCHQIKK--PAQL---R-KICGFVAQED--NLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTH------ 198 (627)
Q Consensus 133 i~g~~~~~--~~~~---r-~~ig~v~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~------ 198 (627)
++|+++.. ..++ | .+|+++||++ .|.|-.|+.+.+.-..+++ .+.++++.++++.++|+.+|+.+
T Consensus 74 f~G~dll~~se~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~H-rg~~~~~Ar~r~lelL~~VgI~~p~~rl~ 152 (534)
T COG4172 74 FDGEDLLAASERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLH-RGLSRAAARARALELLELVGIPEPEKRLD 152 (534)
T ss_pred EcChhhhcCCHHHHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHH-hcccHHHHHHHHHHHHHHcCCCchhhhhh
Confidence 99999843 2333 3 3699999997 6788889999998887665 35678889999999999999964
Q ss_pred -ccCCcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheee
Q 006897 199 -VAGSFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLIL 259 (627)
Q Consensus 199 -~~~~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL 259 (627)
..++++|||||| ||++||...+.+|+++|+++.++.|++++++|||+.. +.+++|||+||
T Consensus 153 ~yPHeLSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~i-Vr~~ADrV~VM 231 (534)
T COG4172 153 AYPHELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGI-VRKFADRVYVM 231 (534)
T ss_pred hCCcccCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHH-HHHhhhhEEEE
Confidence 446777999999 9999999999999999999999999999999999995 88999999999
Q ss_pred cCCeEEeeCCHHHHH
Q 006897 260 SRGSVVHYGSLELLE 274 (627)
Q Consensus 260 ~~G~iv~~G~~~~~~ 274 (627)
.+|++++.|+.+++.
T Consensus 232 ~~G~ivE~~~t~~lF 246 (534)
T COG4172 232 QHGEIVETGTTETLF 246 (534)
T ss_pred eccEEeecCcHHHHh
Confidence 999999999988764
|
|
| >COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-30 Score=254.73 Aligned_cols=217 Identities=24% Similarity=0.345 Sum_probs=176.9
Q ss_pred eEEEEeEEEEEccCcc--cc----cccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccc
Q 006897 56 KVTVRNLSYAIQPNTS--IL----SHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPR 129 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~--~~----~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G 129 (627)
++.++||++.|..... .. ..+.+.+.....+++||||+|++|++++++|||||||||+||+|+|++.|++ |
T Consensus 3 ~i~~~~l~k~~~~~~k~pgl~g~l~~~~~~k~~~~~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~---G 79 (325)
T COG4586 3 MIMVENLSKNYPVAIKEPGLKGSLNHFFHRKERSIEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTS---G 79 (325)
T ss_pred eeEecccccccceeeeCchhHHHHHhhcCchhhhhhhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCC---C
Confidence 6789999988853211 11 1233444445569999999999999999999999999999999999999975 9
Q ss_pred eEEECCccCCC-hhhhcccEEEEc-cCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccC----Cc
Q 006897 130 SITVNCHQIKK-PAQLRKICGFVA-QEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAG----SF 203 (627)
Q Consensus 130 ~i~i~g~~~~~-~~~~r~~ig~v~-Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~----~~ 203 (627)
.|.++|.+..+ .+++-+++++|+ |...+.-.+.+.|.+...... ..++.++-.++.+.+.+.++|+...+ ++
T Consensus 80 ~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdlp~~ds~~v~~~I--y~Ipd~~F~~r~~~l~eiLdl~~~lk~~vr~L 157 (325)
T COG4586 80 KVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDLPALDSLEVLKLI--YEIPDDEFAERLDFLTEILDLEGFLKWPVRKL 157 (325)
T ss_pred eEEecCcCcchhHHHHHHHHHHHhhhhheeeeechhhhhHHHHHHH--HhCCHHHHHHHHHHHHHHhcchhhhhhhhhhc
Confidence 99999987532 344556788776 445666666788887765433 24567788899999999999986554 55
Q ss_pred CCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEE
Q 006897 204 VGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVV 265 (627)
Q Consensus 204 ~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv 265 (627)
+-|||.| ||-|||..++..+.+.|++..++.+.||+++||+++ ++.++||||++|++|+++
T Consensus 158 SlGqRmraeLaaaLLh~p~VLfLDEpTvgLDV~aq~~ir~Flke~n~~~~aTVllTTH~~~-di~~lc~rv~~I~~Gqlv 236 (325)
T COG4586 158 SLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQATVLLTTHIFD-DIATLCDRVLLIDQGQLV 236 (325)
T ss_pred cchHHHHHHHHHHhcCCCcEEEecCCccCcchhHHHHHHHHHHHHHHhhCceEEEEecchh-hHHHhhhheEEeeCCcEe
Confidence 6899877 999999999999999999999999999999999999 699999999999999999
Q ss_pred eeCCHHHHHHHHH
Q 006897 266 HYGSLELLEETIN 278 (627)
Q Consensus 266 ~~G~~~~~~~~~~ 278 (627)
++|+.+++.+.|.
T Consensus 237 ~dg~l~~l~~~f~ 249 (325)
T COG4586 237 FDGTLAQLQEQFG 249 (325)
T ss_pred ecccHHHHHHHhC
Confidence 9999999987764
|
|
| >cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.8e-30 Score=248.26 Aligned_cols=171 Identities=26% Similarity=0.445 Sum_probs=130.5
Q ss_pred EEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCc
Q 006897 57 VTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCH 136 (627)
Q Consensus 57 l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~ 136 (627)
|+++|++++|+. .++.+++|+||++++||+++|+||||||||||+++|+|+++|++ |+|.++|+
T Consensus 1 i~~~~l~~~~~~-------------~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~---G~i~~~g~ 64 (173)
T cd03246 1 LEVENVSFRYPG-------------AEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTS---GRVRLDGA 64 (173)
T ss_pred CEEEEEEEEcCC-------------CCCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCC---CeEEECCE
Confidence 478999999942 12358999999999999999999999999999999999999864 99999998
Q ss_pred cCCC--hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccCCcCCccccCCCCC
Q 006897 137 QIKK--PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAGSFVGDEENRGISG 214 (627)
Q Consensus 137 ~~~~--~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~gGe~qrPtsg 214 (627)
++.+ ...+++.++|++|++.+++. |++||+ + +..+. +++.=+...+. ..+-++- ..||+|
T Consensus 65 ~~~~~~~~~~~~~i~~~~q~~~~~~~-tv~~~l-L---------S~G~~-qrv~la~al~~---~p~~lll---DEPt~~ 126 (173)
T cd03246 65 DISQWDPNELGDHVGYLPQDDELFSG-SIAENI-L---------SGGQR-QRLGLARALYG---NPRILVL---DEPNSH 126 (173)
T ss_pred EcccCCHHHHHhheEEECCCCccccC-cHHHHC-c---------CHHHH-HHHHHHHHHhc---CCCEEEE---ECCccc
Confidence 8632 34567789999999988875 999998 1 11111 11111110000 0000111 129999
Q ss_pred CCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeE
Q 006897 215 LDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSV 264 (627)
Q Consensus 215 LD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~i 264 (627)
||+.++..+.+.|+++++ +|+|||++|||++ .+ +.||++++|++|++
T Consensus 127 LD~~~~~~l~~~l~~~~~-~~~tii~~sh~~~-~~-~~~d~v~~l~~G~i 173 (173)
T cd03246 127 LDVEGERALNQAIAALKA-AGATRIVIAHRPE-TL-ASADRILVLEDGRV 173 (173)
T ss_pred cCHHHHHHHHHHHHHHHh-CCCEEEEEeCCHH-HH-HhCCEEEEEECCCC
Confidence 999999999999999975 5899999999997 35 68999999999974
|
They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra |
| >TIGR01192 chvA glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.1e-30 Score=292.00 Aligned_cols=194 Identities=23% Similarity=0.395 Sum_probs=155.4
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
.++++||+++|++ ++++|+|+||++++||.+||+||||||||||+++|+|+++|++ |+|.++|
T Consensus 334 ~i~~~~v~~~y~~--------------~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~---G~i~~~g 396 (585)
T TIGR01192 334 AVEFRHITFEFAN--------------SSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTV---GQILIDG 396 (585)
T ss_pred eEEEEEEEEECCC--------------CCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCC---CEEEECC
Confidence 5999999999942 1358999999999999999999999999999999999999864 9999999
Q ss_pred ccCCC--hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHH-----HHHHHHc--CCcc----ccCC
Q 006897 136 HQIKK--PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRV-----ESLMDEL--GLTH----VAGS 202 (627)
Q Consensus 136 ~~~~~--~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v-----~~~l~~l--gL~~----~~~~ 202 (627)
.++.+ ...+|+.++||+|++.+++. |++||+.++. +..+.++..+.+ ++.+..+ |++. ....
T Consensus 397 ~~~~~~~~~~~~~~i~~v~q~~~lf~~-ti~~Ni~~~~----~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~ 471 (585)
T TIGR01192 397 IDINTVTRESLRKSIATVFQDAGLFNR-SIRENIRLGR----EGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNR 471 (585)
T ss_pred EEhhhCCHHHHHhheEEEccCCccCcc-cHHHHHhcCC----CCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCC
Confidence 88643 45688999999999999875 9999998752 112222222211 1222222 3332 2235
Q ss_pred cCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeE
Q 006897 203 FVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSV 264 (627)
Q Consensus 203 ~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~i 264 (627)
++|||||| ||++||+.+++.+.+.|+++. .++|+|++||+++. + +.||++++|++|++
T Consensus 472 LSgGq~qrl~lARall~~p~ililDEpts~LD~~~~~~i~~~l~~~~--~~~tvI~isH~~~~-~-~~~d~i~~l~~G~i 547 (585)
T TIGR01192 472 LSGGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALR--KNRTTFIIAHRLST-V-RNADLVLFLDQGRL 547 (585)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHh--CCCEEEEEEcChHH-H-HcCCEEEEEECCEE
Confidence 67999999 999999999999999999874 47999999999973 4 67999999999999
Q ss_pred EeeCCHHHHHH
Q 006897 265 VHYGSLELLEE 275 (627)
Q Consensus 265 v~~G~~~~~~~ 275 (627)
++.|+.+++.+
T Consensus 548 ~~~g~~~~l~~ 558 (585)
T TIGR01192 548 IEKGSFQELIQ 558 (585)
T ss_pred EEECCHHHHHH
Confidence 99999987754
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related. |
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.7e-30 Score=286.73 Aligned_cols=194 Identities=20% Similarity=0.367 Sum_probs=161.0
Q ss_pred ceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEEC
Q 006897 55 CKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVN 134 (627)
Q Consensus 55 ~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~ 134 (627)
..++++|+++ .+|+|+||++++||+++|+||||||||||+|+|+|+++|++ |+|.++
T Consensus 256 ~~l~~~~l~~--------------------~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~---G~I~~~ 312 (501)
T PRK10762 256 VRLKVDNLSG--------------------PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTS---GYVTLD 312 (501)
T ss_pred cEEEEeCccc--------------------CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCc---eEEEEC
Confidence 3689999974 16999999999999999999999999999999999999864 999999
Q ss_pred CccCCC--h-hhhcccEEEEccCC---CCCCCCCHHHHHHHHHHhcCC---C-CCHHHHHHHHHHHHHHcCCc-cccC--
Q 006897 135 CHQIKK--P-AQLRKICGFVAQED---NLLPLLTVKETLMFSANFRLK---G-MSHKEKEDRVESLMDELGLT-HVAG-- 201 (627)
Q Consensus 135 g~~~~~--~-~~~r~~ig~v~Q~~---~l~~~lTV~e~l~~~~~~~~~---~-~~~~~~~~~v~~~l~~lgL~-~~~~-- 201 (627)
|+++.. . ...++.+|||+|++ .+++.+||.||+.++...... + ...++.+++++++++.+||. +..+
T Consensus 313 g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 392 (501)
T PRK10762 313 GHEVVTRSPQDGLANGIVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQA 392 (501)
T ss_pred CEECCCCCHHHHHHCCCEEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCc
Confidence 987632 1 23567799999995 578889999999875311100 1 22334456789999999994 4444
Q ss_pred --CcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecC
Q 006897 202 --SFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSR 261 (627)
Q Consensus 202 --~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~ 261 (627)
.++|||||| ||+|||+.++..+.+.|++++++ |.|||++|||++ ++.++||++++|++
T Consensus 393 ~~~LSgGekqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-g~tviivtHd~~-~~~~~~d~v~~l~~ 470 (501)
T PRK10762 393 IGLLSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAE-GLSIILVSSEMP-EVLGMSDRILVMHE 470 (501)
T ss_pred hhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHC-CCEEEEEcCCHH-HHHhhCCEEEEEEC
Confidence 556999999 99999999999999999999764 899999999998 58899999999999
Q ss_pred CeEEeeCCHHHH
Q 006897 262 GSVVHYGSLELL 273 (627)
Q Consensus 262 G~iv~~G~~~~~ 273 (627)
|+++..|+++++
T Consensus 471 G~i~~~~~~~~~ 482 (501)
T PRK10762 471 GRISGEFTREQA 482 (501)
T ss_pred CEEEEEeccccC
Confidence 999999887665
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-30 Score=322.40 Aligned_cols=190 Identities=21% Similarity=0.283 Sum_probs=161.2
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
.|+++||+++|+++ .+++|+|+||+|++||.+||+||||||||||+++|.|+++|++ |+|.+||
T Consensus 1234 ~I~f~nVsf~Y~~~-------------~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~---G~I~IdG 1297 (1495)
T PLN03232 1234 SIKFEDVHLRYRPG-------------LPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEK---GRIMIDD 1297 (1495)
T ss_pred cEEEEEEEEEECCC-------------CCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCC---ceEEECC
Confidence 59999999999421 2469999999999999999999999999999999999999864 9999999
Q ss_pred ccCCC--hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCcccc-------------
Q 006897 136 HQIKK--PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVA------------- 200 (627)
Q Consensus 136 ~~~~~--~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~------------- 200 (627)
.++.+ ..++|++++||||++.+|++ |++|||.++. . ..++++.++++..++.+..
T Consensus 1298 ~di~~i~~~~lR~~i~iVpQdp~LF~g-TIr~NL~~~~-----~----~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e 1367 (1495)
T PLN03232 1298 CDVAKFGLTDLRRVLSIIPQSPVLFSG-TVRFNIDPFS-----E----HNDADLWEALERAHIKDVIDRNPFGLDAEVSE 1367 (1495)
T ss_pred EEhhhCCHHHHHhhcEEECCCCeeeCc-cHHHHcCCCC-----C----CCHHHHHHHHHHcCCHHHHHhCcCCCCceecC
Confidence 99743 56789999999999999987 9999997531 1 1234577777777665421
Q ss_pred --CCcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeec
Q 006897 201 --GSFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILS 260 (627)
Q Consensus 201 --~~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~ 260 (627)
..++|||||| |||+||+.+.+.|.+.|++.. .++|+|+|+|+++. + ..||||++|+
T Consensus 1368 ~G~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~--~~~TvI~IAHRl~t-i-~~~DrIlVL~ 1443 (1495)
T PLN03232 1368 GGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEF--KSCTMLVIAHRLNT-I-IDCDKILVLS 1443 (1495)
T ss_pred CCCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHc--CCCEEEEEeCCHHH-H-HhCCEEEEEE
Confidence 2456899999 999999999999999999874 47999999999973 4 5699999999
Q ss_pred CCeEEeeCCHHHHHH
Q 006897 261 RGSVVHYGSLELLEE 275 (627)
Q Consensus 261 ~G~iv~~G~~~~~~~ 275 (627)
+|++++.|+++++.+
T Consensus 1444 ~G~ivE~Gt~~eLl~ 1458 (1495)
T PLN03232 1444 SGQVLEYDSPQELLS 1458 (1495)
T ss_pred CCEEEEECCHHHHHh
Confidence 999999999998853
|
|
| >cd03288 ABCC_SUR2 The SUR domain 2 | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.7e-30 Score=264.21 Aligned_cols=195 Identities=22% Similarity=0.255 Sum_probs=153.3
Q ss_pred ceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEEC
Q 006897 55 CKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVN 134 (627)
Q Consensus 55 ~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~ 134 (627)
..|+++|++++|+. ..+.+|+|+||++++||+++|+|+||||||||+++|+|+++|.+ |+|.++
T Consensus 18 ~~i~~~~l~~~~~~-------------~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~---G~i~i~ 81 (257)
T cd03288 18 GEIKIHDLCVRYEN-------------NLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFD---GKIVID 81 (257)
T ss_pred ceEEEEEEEEEeCC-------------CCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCC---CeEEEC
Confidence 36999999999942 12359999999999999999999999999999999999998864 999999
Q ss_pred CccCCC--hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHH-----HHHHHHHHHc--CCcccc----C
Q 006897 135 CHQIKK--PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKE-----DRVESLMDEL--GLTHVA----G 201 (627)
Q Consensus 135 g~~~~~--~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~-----~~v~~~l~~l--gL~~~~----~ 201 (627)
|+++.. ...+++.++|++|++.+++. |++||+.... ........ ..+.+.++.+ |++... .
T Consensus 82 g~~i~~~~~~~~~~~i~~v~q~~~l~~~-tv~~nl~~~~-----~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~ 155 (257)
T cd03288 82 GIDISKLPLHTLRSRLSIILQDPILFSG-SIRFNLDPEC-----KCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGE 155 (257)
T ss_pred CEEhhhCCHHHHhhhEEEECCCCccccc-HHHHhcCcCC-----CCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCC
Confidence 988632 34567889999999988874 9999985421 01111111 1233344444 444332 3
Q ss_pred CcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCe
Q 006897 202 SFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGS 263 (627)
Q Consensus 202 ~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~ 263 (627)
.++|||+|| ||+|||+.++..+.+.|+++. ++.|||++||+++. +. .|||+++|++|+
T Consensus 156 ~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~--~~~tiii~sh~~~~-~~-~~dri~~l~~G~ 231 (257)
T cd03288 156 NFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATENILQKVVMTAF--ADRTVVTIAHRVST-IL-DADLVLVLSRGI 231 (257)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHhc--CCCEEEEEecChHH-HH-hCCEEEEEECCE
Confidence 567999998 999999999999999999874 37999999999984 55 499999999999
Q ss_pred EEeeCCHHHHHH
Q 006897 264 VVHYGSLELLEE 275 (627)
Q Consensus 264 iv~~G~~~~~~~ 275 (627)
+++.|+++++.+
T Consensus 232 i~~~g~~~~~~~ 243 (257)
T cd03288 232 LVECDTPENLLA 243 (257)
T ss_pred EEEeCCHHHHHh
Confidence 999999887643
|
The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >PRK13540 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.6e-30 Score=250.69 Aligned_cols=174 Identities=24% Similarity=0.366 Sum_probs=145.6
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
+|+++|++++|. ++++|+|+||++++||+++|+||||||||||+++|+|+.+|++ |+|.++|
T Consensus 1 ml~~~~l~~~~~---------------~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~---G~v~~~g 62 (200)
T PRK13540 1 MLDVIELDFDYH---------------DQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEK---GEILFER 62 (200)
T ss_pred CEEEEEEEEEeC---------------CeeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCC---eeEEECC
Confidence 478999999993 2459999999999999999999999999999999999998864 9999999
Q ss_pred ccCCC-hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccC----CcCCccccC
Q 006897 136 HQIKK-PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAG----SFVGDEENR 210 (627)
Q Consensus 136 ~~~~~-~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~----~~~gGe~qr 210 (627)
+++.. ...+++.++|++|+..+++.+||+||+.+.... .. .+.+++++++.+++.+..+ .++|||+||
T Consensus 63 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~~~~~~-----~~--~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~r 135 (200)
T PRK13540 63 QSIKKDLCTYQKQLCFVGHRSGINPYLTLRENCLYDIHF-----SP--GAVGITELCRLFSLEHLIDYPCGLLSSGQKRQ 135 (200)
T ss_pred CccccCHHHHHhheEEeccccccCcCCCHHHHHHHHHhc-----Cc--chHHHHHHHHHcCCchhhhCChhhcCHHHHHH
Confidence 88642 245677899999999888889999999986421 11 1346889999999876544 456999998
Q ss_pred ------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhhe
Q 006897 211 ------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFL 257 (627)
Q Consensus 211 ------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~ 257 (627)
||+|||+.++..+.+.|+++++ .|.|||++||++.. .+.||...
T Consensus 136 v~laral~~~p~~lilDEP~~~LD~~~~~~l~~~l~~~~~-~~~tiii~sh~~~~--~~~~d~~~ 197 (200)
T PRK13540 136 VALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRA-KGGAVLLTSHQDLP--LNKADYEE 197 (200)
T ss_pred HHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHH-cCCEEEEEeCCchh--ccccchhh
Confidence 9999999999999999999865 58999999999873 56687544
|
|
| >COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.3e-30 Score=270.47 Aligned_cols=197 Identities=25% Similarity=0.398 Sum_probs=162.4
Q ss_pred ceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEEC
Q 006897 55 CKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVN 134 (627)
Q Consensus 55 ~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~ 134 (627)
..|.++++++. +++.++++|+|+||++.+||.+|||||||||||||.|+|.|..+|.. |.|.+|
T Consensus 333 g~L~Ve~l~~~-------------PPg~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~---G~VRLD 396 (580)
T COG4618 333 GALSVERLTAA-------------PPGQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTS---GSVRLD 396 (580)
T ss_pred ceeeEeeeeec-------------CCCCCCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCC---CcEEec
Confidence 46999999983 23456789999999999999999999999999999999999999975 999999
Q ss_pred CccCC--ChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCcc-------ccC----
Q 006897 135 CHQIK--KPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTH-------VAG---- 201 (627)
Q Consensus 135 g~~~~--~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-------~~~---- 201 (627)
|.++. +++++-++|||+||+-.||+. ||.|||.=. . ++...+++-++.+.-|.++ -.|
T Consensus 397 ga~l~qWd~e~lG~hiGYLPQdVeLF~G-TIaeNIaRf-----~---~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG 467 (580)
T COG4618 397 GADLRQWDREQLGRHIGYLPQDVELFDG-TIAENIARF-----G---EEADPEKVIEAARLAGVHELILRLPQGYDTRIG 467 (580)
T ss_pred chhhhcCCHHHhccccCcCcccceecCC-cHHHHHHhc-----c---ccCCHHHHHHHHHHcChHHHHHhCcCCccCccC
Confidence 98873 467888999999999999998 999999622 1 1122233333333333322 222
Q ss_pred ----CcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheee
Q 006897 202 ----SFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLIL 259 (627)
Q Consensus 202 ----~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL 259 (627)
.++|||||| |-|+||...+..+.+.|.++++ +|.|+|+++|.|+ +...+|+|++|
T Consensus 468 ~~G~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~-rG~~vvviaHRPs--~L~~~Dkilvl 544 (580)
T COG4618 468 EGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKA-RGGTVVVIAHRPS--ALASVDKILVL 544 (580)
T ss_pred CCCCCCCchHHHHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHH-cCCEEEEEecCHH--HHhhcceeeee
Confidence 445899999 8899999999999999999965 5899999999997 68899999999
Q ss_pred cCCeEEeeCCHHHHHHHHHh
Q 006897 260 SRGSVVHYGSLELLEETINN 279 (627)
Q Consensus 260 ~~G~iv~~G~~~~~~~~~~~ 279 (627)
++|++-.+|+.+|+...+..
T Consensus 545 ~~G~~~~FG~r~eVLa~~~~ 564 (580)
T COG4618 545 QDGRIAAFGPREEVLAKVLR 564 (580)
T ss_pred cCChHHhcCCHHHHHHHhcC
Confidence 99999999999999877653
|
|
| >cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.6e-30 Score=259.15 Aligned_cols=186 Identities=25% Similarity=0.400 Sum_probs=149.6
Q ss_pred ceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEEC
Q 006897 55 CKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVN 134 (627)
Q Consensus 55 ~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~ 134 (627)
.+|+++|+++.|+.+ +++.+|+|+||++++||+++|+||||||||||+++|+|+++|+. |+|.++
T Consensus 10 ~~l~~~~l~~~~~~~------------~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~---G~i~~~ 74 (226)
T cd03248 10 GIVKFQNVTFAYPTR------------PDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQG---GQVLLD 74 (226)
T ss_pred ceEEEEEEEEEeCCC------------CCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCC---cEEEEC
Confidence 479999999999421 12359999999999999999999999999999999999998864 999999
Q ss_pred CccCCC--hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHH-----HHHHHHHHHHHc--CCcccc----C
Q 006897 135 CHQIKK--PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKE-----KEDRVESLMDEL--GLTHVA----G 201 (627)
Q Consensus 135 g~~~~~--~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~-----~~~~v~~~l~~l--gL~~~~----~ 201 (627)
|+++.. ....++.++|++|++.+++ .||+||+.++... . ...+ ....++++++.+ |+++.. .
T Consensus 75 g~~~~~~~~~~~~~~i~~~~q~~~l~~-~tv~~nl~~~~~~--~--~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~ 149 (226)
T cd03248 75 GKPISQYEHKYLHSKVSLVGQEPVLFA-RSLQDNIAYGLQS--C--SFECVKEAAQKAHAHSFISELASGYDTEVGEKGS 149 (226)
T ss_pred CCchHHcCHHHHHhhEEEEecccHHHh-hhHHHHhccccCC--C--CHHHHHHHHHHcCcHHHHHhccccccchhhcCCC
Confidence 987532 2345678999999998886 5999999875321 1 1111 112356778888 776543 4
Q ss_pred CcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCe
Q 006897 202 SFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGS 263 (627)
Q Consensus 202 ~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~ 263 (627)
.++|||+|| ||+|||+.++..+.+.|+++++ ++|+|++||+++ ++. .||++++|++|+
T Consensus 150 ~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tii~~sh~~~-~~~-~~d~i~~l~~g~ 225 (226)
T cd03248 150 QLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQVQQALYDWPE--RRTVLVIAHRLS-TVE-RADQILVLDGGR 225 (226)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcC--CCEEEEEECCHH-HHH-hCCEEEEecCCc
Confidence 567999998 9999999999999999999863 589999999998 464 599999999997
Q ss_pred E
Q 006897 264 V 264 (627)
Q Consensus 264 i 264 (627)
+
T Consensus 226 i 226 (226)
T cd03248 226 I 226 (226)
T ss_pred C
Confidence 4
|
Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. |
| >PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2e-29 Score=274.15 Aligned_cols=192 Identities=18% Similarity=0.318 Sum_probs=157.7
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
+++++||++.|..+ ..+.+|+|+||++++||++||+||||||||||+++|+|+++|+. |+|.++|
T Consensus 21 mL~lknL~~~~~~~------------~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~s---GeI~I~G 85 (549)
T PRK13545 21 FDKLKDLFFRSKDG------------EYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNK---GTVDIKG 85 (549)
T ss_pred eeEEEEEEEecCCC------------ccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCc---eEEEECC
Confidence 68888888887421 22469999999999999999999999999999999999999864 9999998
Q ss_pred ccCCChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccC----CcCCccccC-
Q 006897 136 HQIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAG----SFVGDEENR- 210 (627)
Q Consensus 136 ~~~~~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~----~~~gGe~qr- 210 (627)
.+. ++.+...+.+.+|++||+.+..... +.+.++..++++++++.+||.+..+ .++|||+||
T Consensus 86 ~~~-----------~i~~~~~l~~~lTV~EnL~l~~~~~--~~~~~e~~e~i~elLe~lgL~~~ld~~~~~LSGGQrQRV 152 (549)
T PRK13545 86 SAA-----------LIAISSGLNGQLTGIENIELKGLMM--GLTKEKIKEIIPEIIEFADIGKFIYQPVKTYSSGMKSRL 152 (549)
T ss_pred Eee-----------eEEeccccCCCCcHHHHHHhhhhhc--CCCHHHHHHHHHHHHHHcCChhHhhCCcccCCHHHHHHH
Confidence 651 1223345667789999998854322 2344555677889999999976554 456999999
Q ss_pred -----------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeCCHHHH
Q 006897 211 -----------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGSLELL 273 (627)
Q Consensus 211 -----------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~ 273 (627)
||+|||+.++..+++.|+++++ .|+|||++|||++ ++.++||++++|++|++++.|+++++
T Consensus 153 aLArAL~~~P~LLLLDEPTsgLD~~sr~~LlelL~el~~-~G~TIIIVSHdl~-~i~~l~DrIivL~~GkIv~~G~~~el 230 (549)
T PRK13545 153 GFAISVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKE-QGKTIFFISHSLS-QVKSFCTKALWLHYGQVKEYGDIKEV 230 (549)
T ss_pred HHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHh-CCCEEEEEECCHH-HHHHhCCEEEEEECCEEEEECCHHHH
Confidence 9999999999999999999865 5899999999998 58899999999999999999999887
Q ss_pred HHHH
Q 006897 274 EETI 277 (627)
Q Consensus 274 ~~~~ 277 (627)
...+
T Consensus 231 ~~~~ 234 (549)
T PRK13545 231 VDHY 234 (549)
T ss_pred HhhH
Confidence 6543
|
|
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.9e-30 Score=317.79 Aligned_cols=197 Identities=20% Similarity=0.342 Sum_probs=162.3
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCC----------
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQD---------- 125 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~---------- 125 (627)
.|+++||+|+|+.+ .+++||+|+||+|++|+.+||+||||||||||+++|.|++.|..
T Consensus 1165 ~I~f~nVsF~Y~~~------------~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~ 1232 (1466)
T PTZ00265 1165 KIEIMDVNFRYISR------------PNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEH 1232 (1466)
T ss_pred eEEEEEEEEECCCC------------CCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCcccccccccccc
Confidence 59999999999532 13469999999999999999999999999999999999999820
Q ss_pred -----------------------------------------CccceEEECCccCC--ChhhhcccEEEEccCCCCCCCCC
Q 006897 126 -----------------------------------------FDPRSITVNCHQIK--KPAQLRKICGFVAQEDNLLPLLT 162 (627)
Q Consensus 126 -----------------------------------------~~~G~i~i~g~~~~--~~~~~r~~ig~v~Q~~~l~~~lT 162 (627)
.++|+|.+||.++. +.+.+|++||||+|++.+|+. |
T Consensus 1233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~g-T 1311 (1466)
T PTZ00265 1233 TNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNM-S 1311 (1466)
T ss_pred ccccccccccccccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccccc-c
Confidence 13599999999974 357899999999999999975 9
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCcccc---------------CCcCCccccC-----------------
Q 006897 163 VKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVA---------------GSFVGDEENR----------------- 210 (627)
Q Consensus 163 V~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~---------------~~~~gGe~qr----------------- 210 (627)
++|||.++. +.. .+++++++++..++++.. ..++||||||
T Consensus 1312 IreNI~~g~----~~a----t~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLD 1383 (1466)
T PTZ00265 1312 IYENIKFGK----EDA----TREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLD 1383 (1466)
T ss_pred HHHHHhcCC----CCC----CHHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 999999862 111 234567777776664422 2456899999
Q ss_pred -CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecC----CeEE-eeCCHHHHHH
Q 006897 211 -GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSR----GSVV-HYGSLELLEE 275 (627)
Q Consensus 211 -PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~----G~iv-~~G~~~~~~~ 275 (627)
|||+||+.+++.|.+.|+++.+..++|+|+|+|+++ ..+.||+|++|++ |+++ +.|+++++.+
T Consensus 1384 EaTSaLD~~sE~~I~~~L~~~~~~~~~TvIiIaHRls--ti~~aD~Ivvl~~~~~~G~iv~e~Gth~eLl~ 1452 (1466)
T PTZ00265 1384 EATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIA--SIKRSDKIVVFNNPDRTGSFVQAHGTHEELLS 1452 (1466)
T ss_pred CcccccCHHHHHHHHHHHHHHhccCCCEEEEEechHH--HHHhCCEEEEEeCCCCCCCEEEEecCHHHHHh
Confidence 999999999999999999985334899999999997 3678999999999 9955 8999998753
|
|
| >TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.8e-30 Score=249.85 Aligned_cols=174 Identities=24% Similarity=0.364 Sum_probs=143.8
Q ss_pred EEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCc
Q 006897 57 VTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCH 136 (627)
Q Consensus 57 l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~ 136 (627)
|+++|++++|+ ++.+|+|+||++++||+++|+||||||||||+++|+|+++|++ |+|.++|+
T Consensus 1 l~~~~l~~~~~---------------~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g~ 62 (198)
T TIGR01189 1 LAARNLACSRG---------------ERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDS---GEVRWNGT 62 (198)
T ss_pred CEEEEEEEEEC---------------CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCc---cEEEECCE
Confidence 47899999993 3469999999999999999999999999999999999998864 99999998
Q ss_pred cCCC-hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccC----CcCCccccC-
Q 006897 137 QIKK-PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAG----SFVGDEENR- 210 (627)
Q Consensus 137 ~~~~-~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~----~~~gGe~qr- 210 (627)
++.. ....++.++|++|++.+++.+|+.||+.+....+ . .+ ++++.++++.+|+++..+ .++|||+||
T Consensus 63 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~--~---~~-~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv 136 (198)
T TIGR01189 63 ALAEQRDEPHRNILYLGHLPGLKPELSALENLHFWAAIH--G---GA-QRTIEDALAAVGLTGFEDLPAAQLSAGQQRRL 136 (198)
T ss_pred EcccchHHhhhheEEeccCcccccCCcHHHHHHHHHHHc--C---Cc-HHHHHHHHHHcCCHHHhcCChhhcCHHHHHHH
Confidence 7532 2345678999999988888899999998865332 1 11 346788999999976554 456999998
Q ss_pred -----------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhhee
Q 006897 211 -----------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLI 258 (627)
Q Consensus 211 -----------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~v 258 (627)
||+|||+.++..+.+.|+++++ .|.|+|++||++.. -.|++++.
T Consensus 137 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~sH~~~~---~~~~~~~~ 197 (198)
T TIGR01189 137 ALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLA-RGGIVLLTTHQDLG---LVEARELR 197 (198)
T ss_pred HHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-CCCEEEEEEccccc---ccceEEee
Confidence 9999999999999999999865 48899999999862 34566654
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. |
| >COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-29 Score=237.72 Aligned_cols=200 Identities=23% Similarity=0.391 Sum_probs=171.1
Q ss_pred ceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEEC
Q 006897 55 CKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVN 134 (627)
Q Consensus 55 ~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~ 134 (627)
..|+++||+++| +..++|+|+||++.+||+-+|||||||||||++.+|+|..+|+. |++.++
T Consensus 4 ~iL~~~~vsVsF---------------~GF~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~---G~v~f~ 65 (249)
T COG4674 4 IILYLDGVSVSF---------------GGFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQE---GEVLFD 65 (249)
T ss_pred ceEEEeceEEEE---------------cceeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCCc---ceEEEc
Confidence 369999999999 35679999999999999999999999999999999999999864 999999
Q ss_pred C-ccCCC---hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCC------CCCHHHHHHHHHHHHHHcCCccccCC--
Q 006897 135 C-HQIKK---PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLK------GMSHKEKEDRVESLMDELGLTHVAGS-- 202 (627)
Q Consensus 135 g-~~~~~---~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~------~~~~~~~~~~v~~~l~~lgL~~~~~~-- 202 (627)
| .++.. ..-.|..||--||.|..|+.+||+|||.++...... .....+.+++++++|...||.+.++.
T Consensus 66 g~~dl~~~~e~~IAr~GIGRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A 145 (249)
T COG4674 66 GDTDLTKLPEHRIARAGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLA 145 (249)
T ss_pred CchhhccCCHHHHHHhccCccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhh
Confidence 9 77643 233466799999999999999999999997532111 01234556789999999999877654
Q ss_pred --cCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCC
Q 006897 203 --FVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRG 262 (627)
Q Consensus 203 --~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G 262 (627)
++.||||+ |++|+--....+.-++|+.++. +.+|+++.||+.. +.+++|+|.+|++|
T Consensus 146 ~~LSHGqKQwLEIGMll~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la~--~hsilVVEHDM~F-vr~~A~~VTVlh~G 222 (249)
T COG4674 146 ALLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAG--KHSILVVEHDMGF-VREIADKVTVLHEG 222 (249)
T ss_pred hhhccchhhhhhhheeeccCCcEEEecCccCCCcHHHHHHHHHHHHHHhc--CceEEEEeccHHH-HHHhhheeEEEecc
Confidence 55899988 9999999999999999999984 5799999999996 89999999999999
Q ss_pred eEEeeCCHHHHHH
Q 006897 263 SVVHYGSLELLEE 275 (627)
Q Consensus 263 ~iv~~G~~~~~~~ 275 (627)
.+...|+.+++..
T Consensus 223 ~VL~EGsld~v~~ 235 (249)
T COG4674 223 SVLAEGSLDEVQN 235 (249)
T ss_pred ceeecccHHHhhc
Confidence 9999999988753
|
|
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.7e-30 Score=315.74 Aligned_cols=190 Identities=23% Similarity=0.308 Sum_probs=161.8
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
.|+++||+++|+++ ..++|+|+||+|++||.+||+|+||||||||+++|.|+++|++ |+|.+||
T Consensus 1237 ~I~f~nVsf~Y~~~-------------~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~---G~I~IDG 1300 (1622)
T PLN03130 1237 SIKFEDVVLRYRPE-------------LPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELER---GRILIDG 1300 (1622)
T ss_pred cEEEEEEEEEeCCC-------------CCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCC---ceEEECC
Confidence 59999999999422 2359999999999999999999999999999999999999864 9999999
Q ss_pred ccCCC--hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCcccc-------------
Q 006897 136 HQIKK--PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVA------------- 200 (627)
Q Consensus 136 ~~~~~--~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~------------- 200 (627)
.++.+ ..++|+++++|||++.+|++ |++|||.++. +..++++.++++..++.+..
T Consensus 1301 ~dI~~i~l~~LR~~IsiVpQdp~LF~G-TIreNLd~~~---------~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge 1370 (1622)
T PLN03130 1301 CDISKFGLMDLRKVLGIIPQAPVLFSG-TVRFNLDPFN---------EHNDADLWESLERAHLKDVIRRNSLGLDAEVSE 1370 (1622)
T ss_pred EecccCCHHHHHhccEEECCCCccccc-cHHHHhCcCC---------CCCHHHHHHHHHHcCcHHHHHhCccccCccccC
Confidence 99753 57899999999999999987 9999997641 11245577777777765322
Q ss_pred --CCcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeec
Q 006897 201 --GSFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILS 260 (627)
Q Consensus 201 --~~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~ 260 (627)
..++|||||| |||+||+.+.+.|.+.|++.. .++|+|+|+|+++. + ..||||++|+
T Consensus 1371 ~G~nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~--~~~TvI~IAHRL~t-I-~~~DrIlVLd 1446 (1622)
T PLN03130 1371 AGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNT-I-IDCDRILVLD 1446 (1622)
T ss_pred CCCCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEEeCChHH-H-HhCCEEEEEE
Confidence 2456899998 899999999999999999874 47999999999984 4 5699999999
Q ss_pred CCeEEeeCCHHHHHH
Q 006897 261 RGSVVHYGSLELLEE 275 (627)
Q Consensus 261 ~G~iv~~G~~~~~~~ 275 (627)
+|++++.|+++++.+
T Consensus 1447 ~G~IvE~Gt~~eLl~ 1461 (1622)
T PLN03130 1447 AGRVVEFDTPENLLS 1461 (1622)
T ss_pred CCEEEEeCCHHHHHh
Confidence 999999999998864
|
|
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=6e-30 Score=285.87 Aligned_cols=195 Identities=15% Similarity=0.328 Sum_probs=160.4
Q ss_pred ceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEEC
Q 006897 55 CKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVN 134 (627)
Q Consensus 55 ~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~ 134 (627)
..++++|+++. .+++|+||+|++||++||+||||||||||+|+|+|+++|++ |+|.++
T Consensus 256 ~~l~~~~~~~~-------------------~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~---G~i~~~ 313 (501)
T PRK11288 256 VRLRLDGLKGP-------------------GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTA---GQVYLD 313 (501)
T ss_pred cEEEEeccccC-------------------CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCC---ceEEEC
Confidence 36899999731 38999999999999999999999999999999999998864 999999
Q ss_pred CccCCC---hhhhcccEEEEccCC---CCCCCCCHHHHHHHHHHhcCC--C--CCHHHHHHHHHHHHHHcCCc-cccC--
Q 006897 135 CHQIKK---PAQLRKICGFVAQED---NLLPLLTVKETLMFSANFRLK--G--MSHKEKEDRVESLMDELGLT-HVAG-- 201 (627)
Q Consensus 135 g~~~~~---~~~~r~~ig~v~Q~~---~l~~~lTV~e~l~~~~~~~~~--~--~~~~~~~~~v~~~l~~lgL~-~~~~-- 201 (627)
|+++.. ....++.++|++|++ .+++.+|+.||+.++...... + ....+.+++++++++.+|+. +..+
T Consensus 314 g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 393 (501)
T PRK11288 314 GKPIDIRSPRDAIRAGIMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQL 393 (501)
T ss_pred CEECCCCCHHHHHhCCCEEcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCc
Confidence 987532 123467899999986 488889999999875321110 1 12233446789999999994 4444
Q ss_pred --CcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecC
Q 006897 202 --SFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSR 261 (627)
Q Consensus 202 --~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~ 261 (627)
.++|||||| ||+|||+.++.+++++|+++++ .|.|||++|||++ ++.++||++++|++
T Consensus 394 ~~~LSgGq~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~g~tviivsHd~~-~~~~~~d~i~~l~~ 471 (501)
T PRK11288 394 IMNLSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAA-QGVAVLFVSSDLP-EVLGVADRIVVMRE 471 (501)
T ss_pred cccCCHHHHHHHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHh-CCCEEEEECCCHH-HHHhhCCEEEEEEC
Confidence 566999999 9999999999999999999976 4899999999998 58999999999999
Q ss_pred CeEEeeCCHHHH
Q 006897 262 GSVVHYGSLELL 273 (627)
Q Consensus 262 G~iv~~G~~~~~ 273 (627)
|++++.|+++++
T Consensus 472 g~i~~~~~~~~~ 483 (501)
T PRK11288 472 GRIAGELAREQA 483 (501)
T ss_pred CEEEEEEccccC
Confidence 999999987654
|
|
| >cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.2e-30 Score=245.84 Aligned_cols=159 Identities=27% Similarity=0.507 Sum_probs=132.0
Q ss_pred EEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCc
Q 006897 57 VTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCH 136 (627)
Q Consensus 57 l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~ 136 (627)
|+++|++++|..+ .+.+|+|+||++++||+++|+||||||||||+++|+|+.+|.. |+|.++|+
T Consensus 1 i~~~~~~~~~~~~-------------~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~---G~i~~~g~ 64 (178)
T cd03247 1 LSINNVSFSYPEQ-------------EQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQ---GEITLDGV 64 (178)
T ss_pred CEEEEEEEEeCCC-------------CccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCC---CEEEECCE
Confidence 4789999999421 1358999999999999999999999999999999999998864 99999998
Q ss_pred cCCC-hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccCCcCCccccC-----
Q 006897 137 QIKK-PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAGSFVGDEENR----- 210 (627)
Q Consensus 137 ~~~~-~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~gGe~qr----- 210 (627)
++.. ...+++.++|++|++.+++ .|++||+ ...++|||+||
T Consensus 65 ~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~~i--------------------------------~~~LS~G~~qrv~lar 111 (178)
T cd03247 65 PVSDLEKALSSLISVLNQRPYLFD-TTLRNNL--------------------------------GRRFSGGERQRLALAR 111 (178)
T ss_pred EHHHHHHHHHhhEEEEccCCeeec-ccHHHhh--------------------------------cccCCHHHHHHHHHHH
Confidence 7522 2345778999999998886 6999998 12233344433
Q ss_pred -------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeC
Q 006897 211 -------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYG 268 (627)
Q Consensus 211 -------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G 268 (627)
||+|||+.++..+++.|+++. ++.|||++||+++. + +.||++++|++|++++.|
T Consensus 112 al~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~--~~~tii~~sh~~~~-~-~~~d~~~~l~~g~i~~~~ 178 (178)
T cd03247 112 ILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVL--KDKTLIWITHHLTG-I-EHMDKILFLENGKIIMQG 178 (178)
T ss_pred HHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHc--CCCEEEEEecCHHH-H-HhCCEEEEEECCEEEecC
Confidence 999999999999999999984 37899999999984 5 579999999999998764
|
The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. |
| >KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.2e-30 Score=269.56 Aligned_cols=191 Identities=26% Similarity=0.411 Sum_probs=157.3
Q ss_pred ceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEEC
Q 006897 55 CKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVN 134 (627)
Q Consensus 55 ~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~ 134 (627)
..++++||++.|++ ++++|+||||++.||+.+||+||||+||||++|+|..+...+ +|.|.+|
T Consensus 536 G~i~fsnvtF~Y~p--------------~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~---sGsI~iD 598 (790)
T KOG0056|consen 536 GKIEFSNVTFAYDP--------------GKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVN---SGSITID 598 (790)
T ss_pred CeEEEEEeEEecCC--------------CCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhcc---CceEEEc
Confidence 36999999999963 457999999999999999999999999999999999887654 4999999
Q ss_pred CccCCC--hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCC-------ccc------
Q 006897 135 CHQIKK--PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGL-------THV------ 199 (627)
Q Consensus 135 g~~~~~--~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL-------~~~------ 199 (627)
|+|+.. ...+|+.||.||||..+|.+ |+..||.|+. +..+.+| +.++.+..++ .+-
T Consensus 599 gqdIrnvt~~SLRs~IGVVPQDtvLFNd-TI~yNIryak----~~Asnee----vyaAAkAA~IHdrIl~fPegY~t~VG 669 (790)
T KOG0056|consen 599 GQDIRNVTQSSLRSSIGVVPQDTVLFND-TILYNIRYAK----PSASNEE----VYAAAKAAQIHDRILQFPEGYNTRVG 669 (790)
T ss_pred CchHHHHHHHHHHHhcCcccCcceeecc-eeeeheeecC----CCCChHH----HHHHHHHhhHHHHHhcCchhhhhhhh
Confidence 999753 46799999999999999976 9999999872 1222333 3333333333 221
Q ss_pred --cCCcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheee
Q 006897 200 --AGSFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLIL 259 (627)
Q Consensus 200 --~~~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL 259 (627)
.-+++|||||| .||+||..+.+.|-..|.++++ ++|-|++.|+++. .-.+|.|+++
T Consensus 670 ERGLkLSGGEKQRVAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rlca--~RTtIVvAHRLST--ivnAD~ILvi 745 (790)
T KOG0056|consen 670 ERGLKLSGGEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQAALARLCA--NRTTIVVAHRLST--IVNADLILVI 745 (790)
T ss_pred hcccccCCcchhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHhc--CCceEEEeeeehh--eecccEEEEE
Confidence 22456999999 6899999999999999999984 7899999999984 4569999999
Q ss_pred cCCeEEeeCCHHHHHH
Q 006897 260 SRGSVVHYGSLELLEE 275 (627)
Q Consensus 260 ~~G~iv~~G~~~~~~~ 275 (627)
++|+|++.|..+|+..
T Consensus 746 ~~G~IvErG~HeeLl~ 761 (790)
T KOG0056|consen 746 SNGRIVERGRHEELLK 761 (790)
T ss_pred eCCeEeecCcHHHHHh
Confidence 9999999999998864
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.9e-30 Score=315.71 Aligned_cols=190 Identities=17% Similarity=0.223 Sum_probs=160.4
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
.|+++||+++|+++ ...+|+||||+|++||.+||+|+||||||||+++|.|+++|++ |+|.+||
T Consensus 1284 ~I~f~nVsf~Y~~~-------------~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~---G~I~IdG 1347 (1522)
T TIGR00957 1284 RVEFRNYCLRYRED-------------LDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAE---GEIIIDG 1347 (1522)
T ss_pred cEEEEEEEEEeCCC-------------CcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCC---CeEEECC
Confidence 59999999999532 2359999999999999999999999999999999999999864 9999999
Q ss_pred ccCCC--hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCcccc-------------
Q 006897 136 HQIKK--PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVA------------- 200 (627)
Q Consensus 136 ~~~~~--~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~------------- 200 (627)
.|+.+ ...+|+++++|||++.+|++ |++|||.... ..+ ++++.++++..++.+..
T Consensus 1348 ~dI~~i~~~~LR~~i~iVpQdp~LF~g-TIr~NLdp~~-----~~s----deei~~al~~a~l~~~I~~lp~GLdt~v~e 1417 (1522)
T TIGR00957 1348 LNIAKIGLHDLRFKITIIPQDPVLFSG-SLRMNLDPFS-----QYS----DEEVWWALELAHLKTFVSALPDKLDHECAE 1417 (1522)
T ss_pred EEccccCHHHHHhcCeEECCCCcccCc-cHHHHcCccc-----CCC----HHHHHHHHHHcCcHHHHhhCccCCCceecC
Confidence 99853 56899999999999999987 9999996311 112 34567777777664321
Q ss_pred --CCcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeec
Q 006897 201 --GSFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILS 260 (627)
Q Consensus 201 --~~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~ 260 (627)
..++|||||| |||+||+.+...|.+.|++.. .++|+|+|+|+++. ...||||++|+
T Consensus 1418 ~G~~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~--~~~TvI~IAHRl~t--i~~~DrIlVld 1493 (1522)
T TIGR00957 1418 GGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQF--EDCTVLTIAHRLNT--IMDYTRVIVLD 1493 (1522)
T ss_pred CCCcCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHc--CCCEEEEEecCHHH--HHhCCEEEEEE
Confidence 2355899998 999999999999999999864 47999999999973 56699999999
Q ss_pred CCeEEeeCCHHHHHH
Q 006897 261 RGSVVHYGSLELLEE 275 (627)
Q Consensus 261 ~G~iv~~G~~~~~~~ 275 (627)
+|++++.|+++++.+
T Consensus 1494 ~G~IvE~G~~~eLl~ 1508 (1522)
T TIGR00957 1494 KGEVAEFGAPSNLLQ 1508 (1522)
T ss_pred CCEEEEECCHHHHHh
Confidence 999999999998864
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.2e-29 Score=265.57 Aligned_cols=167 Identities=24% Similarity=0.382 Sum_probs=144.9
Q ss_pred EECCCCCcHHHHHHHHHcCCCCCCCccceEEECCccCCChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHH
Q 006897 102 VVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHK 181 (627)
Q Consensus 102 IiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~~~~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~ 181 (627)
|+||||||||||+|+|+|+++|++ |+|.++|+++......++.+||++|++.+++.+||+||+.|+...+ +.+++
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~---G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~--~~~~~ 75 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDS---GSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMR--KVPRA 75 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCc---eEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhc--CCCHH
Confidence 689999999999999999999864 9999999886432334678999999999999999999999986432 23445
Q ss_pred HHHHHHHHHHHHcCCccccCC----cCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEE
Q 006897 182 EKEDRVESLMDELGLTHVAGS----FVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVV 239 (627)
Q Consensus 182 ~~~~~v~~~l~~lgL~~~~~~----~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii 239 (627)
+.+++++++++.+||++..++ ++|||+|| ||+|||+.++..+.+.|++++++.|+|+|
T Consensus 76 ~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii 155 (325)
T TIGR01187 76 EIKPRVLEALRLVQLEEFADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFV 155 (325)
T ss_pred HHHHHHHHHHHHcCCcchhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEE
Confidence 566789999999999876554 56999999 99999999999999999999876789999
Q ss_pred EEccCccHHHHHHhhhheeecCCeEEeeCCHHHHH
Q 006897 240 LSIHQPSYRILQYISKFLILSRGSVVHYGSLELLE 274 (627)
Q Consensus 240 ~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~ 274 (627)
++|||++ ++.++|||+++|++|+++..|+++++.
T Consensus 156 ivTHd~~-e~~~~~d~i~vl~~G~i~~~g~~~~~~ 189 (325)
T TIGR01187 156 FVTHDQE-EAMTMSDRIAIMRKGKIAQIGTPEEIY 189 (325)
T ss_pred EEeCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 9999998 588999999999999999999998874
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included). |
| >PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.1e-29 Score=283.05 Aligned_cols=180 Identities=17% Similarity=0.299 Sum_probs=152.9
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
.|+++||+++|++ ++++|+|+||++++||.+||+||||||||||+++|+|+++|++ |+|.+||
T Consensus 322 ~i~~~~v~f~y~~--------------~~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~---G~i~~~g 384 (547)
T PRK10522 322 TLELRNVTFAYQD--------------NGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQS---GEILLDG 384 (547)
T ss_pred eEEEEEEEEEeCC--------------CCeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---eEEEECC
Confidence 5999999999942 2358999999999999999999999999999999999999864 9999999
Q ss_pred ccCCC--hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCcccc---------CCcC
Q 006897 136 HQIKK--PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVA---------GSFV 204 (627)
Q Consensus 136 ~~~~~--~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~---------~~~~ 204 (627)
+++.+ ...+|++++||+|++.+|+. |++|| + . ...+++++++++.+++++.. ..++
T Consensus 385 ~~~~~~~~~~~~~~i~~v~q~~~lf~~-ti~~n---~---~------~~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~LS 451 (547)
T PRK10522 385 KPVTAEQPEDYRKLFSAVFTDFHLFDQ-LLGPE---G---K------PANPALVEKWLERLKMAHKLELEDGRISNLKLS 451 (547)
T ss_pred EECCCCCHHHHhhheEEEecChhHHHH-hhccc---c---C------chHHHHHHHHHHHcCCchhhhccccCCCCCCCC
Confidence 98743 45788999999999999875 88887 1 0 12345678888888886532 3677
Q ss_pred CccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEe
Q 006897 205 GDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVH 266 (627)
Q Consensus 205 gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~ 266 (627)
|||+|| ||++||+.+++.+.+.|.+..++.|+|+|++||+++ ..+.||++++|++|++++
T Consensus 452 gGq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~--~~~~~d~i~~l~~G~i~e 529 (547)
T PRK10522 452 KGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDH--YFIHADRLLEMRNGQLSE 529 (547)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechH--HHHhCCEEEEEECCEEEE
Confidence 999999 999999999999999998765445899999999986 467899999999999987
Q ss_pred e
Q 006897 267 Y 267 (627)
Q Consensus 267 ~ 267 (627)
.
T Consensus 530 ~ 530 (547)
T PRK10522 530 L 530 (547)
T ss_pred e
Confidence 6
|
|
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.3e-29 Score=292.63 Aligned_cols=192 Identities=27% Similarity=0.389 Sum_probs=163.5
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
.|+++||+|.|+.+ .+.+||+|+|+++++|+.+||||||||||||.+.+|-..+.|+. |.|.+||
T Consensus 987 ~I~~~~V~F~YPsR------------P~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~---G~V~IDg 1051 (1228)
T KOG0055|consen 987 DIEFRNVSFAYPTR------------PDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDA---GKVKIDG 1051 (1228)
T ss_pred EEEEeeeEeeCCCC------------CCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCC---CeEEECC
Confidence 59999999999744 35679999999999999999999999999999999999998864 9999999
Q ss_pred ccCCC--hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCcc-------ccC-----
Q 006897 136 HQIKK--PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTH-------VAG----- 201 (627)
Q Consensus 136 ~~~~~--~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-------~~~----- 201 (627)
+++.+ .+.+|+++|.|.|+|.||.. |++|||.|+. . ..+ ++++.++++..+..+ -.|
T Consensus 1052 ~dik~lnl~~LR~~i~lVsQEP~LF~~-TIrENI~YG~---~-~vs----~~eIi~Aak~ANaH~FI~sLP~GyDT~vGe 1122 (1228)
T KOG0055|consen 1052 VDIKDLNLKWLRKQIGLVSQEPVLFNG-TIRENIAYGS---E-EVS----EEEIIEAAKLANAHNFISSLPQGYDTRVGE 1122 (1228)
T ss_pred cccccCCHHHHHHhcceeccCchhhcc-cHHHHHhccC---C-CCC----HHHHHHHHHHhhhHHHHhcCcCcccCccCc
Confidence 99854 57899999999999999976 9999999982 1 123 344555665554432 222
Q ss_pred ---CcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeec
Q 006897 202 ---SFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILS 260 (627)
Q Consensus 202 ---~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~ 260 (627)
+++|||||| .||+||+++.+.+-+.|.+.. .|+|.|+|.|+++ ..+.||.|+|++
T Consensus 1123 rG~QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~--~gRT~IvIAHRLS--TIqnaD~I~Vi~ 1198 (1228)
T KOG0055|consen 1123 RGVQLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAM--EGRTTIVIAHRLS--TIQNADVIAVLK 1198 (1228)
T ss_pred ccCcCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhh--cCCcEEEEecchh--hhhcCCEEEEEE
Confidence 445999999 689999999999999999985 4899999999998 368899999999
Q ss_pred CCeEEeeCCHHHHHH
Q 006897 261 RGSVVHYGSLELLEE 275 (627)
Q Consensus 261 ~G~iv~~G~~~~~~~ 275 (627)
+|+|++.|+++++..
T Consensus 1199 ~G~VvE~GtH~~L~~ 1213 (1228)
T KOG0055|consen 1199 NGKVVEQGTHDELLA 1213 (1228)
T ss_pred CCEEEecccHHHHHh
Confidence 999999999999876
|
|
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.1e-29 Score=280.51 Aligned_cols=195 Identities=18% Similarity=0.265 Sum_probs=158.6
Q ss_pred cceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEE
Q 006897 54 TCKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITV 133 (627)
Q Consensus 54 ~~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i 133 (627)
..+|+++|+++ .+|+|+||++++||++||+||||||||||+|+|+|+++|++ |+|.+
T Consensus 266 ~~~l~~~~l~~--------------------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~---G~i~~ 322 (510)
T PRK15439 266 APVLTVEDLTG--------------------EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARG---GRIML 322 (510)
T ss_pred CceEEEeCCCC--------------------CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCC---cEEEE
Confidence 34799999983 15999999999999999999999999999999999998864 99999
Q ss_pred CCccCCC--hh-hhcccEEEEccCC---CCCCCCCHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHHHcCCc-cccC----
Q 006897 134 NCHQIKK--PA-QLRKICGFVAQED---NLLPLLTVKETLMFSANFRLK-GMSHKEKEDRVESLMDELGLT-HVAG---- 201 (627)
Q Consensus 134 ~g~~~~~--~~-~~r~~ig~v~Q~~---~l~~~lTV~e~l~~~~~~~~~-~~~~~~~~~~v~~~l~~lgL~-~~~~---- 201 (627)
+|+++.. .. ..++.++|+||++ .+++.+|+.||+......... .....+.+++++++++.+||+ +..+
T Consensus 323 ~g~~i~~~~~~~~~~~~i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 402 (510)
T PRK15439 323 NGKEINALSTAQRLARGLVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAAR 402 (510)
T ss_pred CCEECCCCCHHHHHhCCcEECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCccc
Confidence 9987632 11 2456799999984 478889999999643110000 011233446788999999996 4444
Q ss_pred CcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCe
Q 006897 202 SFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGS 263 (627)
Q Consensus 202 ~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~ 263 (627)
.++|||||| ||+|||+.++..+.+.|+++++ .|.|||++|||++ ++.++|||+++|++|+
T Consensus 403 ~LSgG~kqrl~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~-~g~tiIivsHd~~-~i~~~~d~i~~l~~G~ 480 (510)
T PRK15439 403 TLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAA-QNVAVLFISSDLE-EIEQMADRVLVMHQGE 480 (510)
T ss_pred cCCcHHHHHHHHHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHh-CCCEEEEECCCHH-HHHHhCCEEEEEECCE
Confidence 466999999 9999999999999999999986 4899999999998 5889999999999999
Q ss_pred EEeeCCHHHH
Q 006897 264 VVHYGSLELL 273 (627)
Q Consensus 264 iv~~G~~~~~ 273 (627)
++..|+++++
T Consensus 481 i~~~~~~~~~ 490 (510)
T PRK15439 481 ISGALTGAAI 490 (510)
T ss_pred EEEEEccccC
Confidence 9998877654
|
|
| >COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.7e-29 Score=247.27 Aligned_cols=174 Identities=25% Similarity=0.372 Sum_probs=148.8
Q ss_pred ceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEEC
Q 006897 55 CKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVN 134 (627)
Q Consensus 55 ~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~ 134 (627)
.+++++||++.|..+... .......+++||||+|++||+++|+|+||||||||-|+|.|+++|++ |+|.++
T Consensus 3 ~ll~v~~l~k~f~~~~~~------~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~---G~i~f~ 73 (268)
T COG4608 3 PLLEVKNLKKYFPVGKGF------GKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTS---GEILFE 73 (268)
T ss_pred ceEEEeccEEEEeccccc------CcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCC---ceEEEc
Confidence 379999999999643210 01113579999999999999999999999999999999999999975 999999
Q ss_pred CccCCChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCcc-----ccCCcCCcccc
Q 006897 135 CHQIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTH-----VAGSFVGDEEN 209 (627)
Q Consensus 135 g~~~~~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-----~~~~~~gGe~q 209 (627)
|+++.... +++..+++.++|+.+||.. ..+.++|||+|
T Consensus 74 g~~i~~~~-------------------------------------~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQ 116 (268)
T COG4608 74 GKDITKLS-------------------------------------KEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQ 116 (268)
T ss_pred Ccchhhcc-------------------------------------hhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhh
Confidence 98853211 2456788999999999864 34566799999
Q ss_pred C------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeCCHH
Q 006897 210 R------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGSLE 271 (627)
Q Consensus 210 r------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~ 271 (627)
| |+|.||...+.+++++|+++.++.|.|.+++|||++. +..+|||+.+|..|+|++.|+.+
T Consensus 117 Ri~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~v-v~~isdri~VMy~G~iVE~g~~~ 195 (268)
T COG4608 117 RIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSV-VRYISDRIAVMYLGKIVEIGPTE 195 (268)
T ss_pred hHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHh-hhhhcccEEEEecCceeEecCHH
Confidence 9 9999999999999999999999999999999999995 88899999999999999999998
Q ss_pred HHHH
Q 006897 272 LLEE 275 (627)
Q Consensus 272 ~~~~ 275 (627)
++..
T Consensus 196 ~~~~ 199 (268)
T COG4608 196 EVFS 199 (268)
T ss_pred HHhh
Confidence 8753
|
|
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.6e-29 Score=279.32 Aligned_cols=187 Identities=16% Similarity=0.269 Sum_probs=154.2
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
+|+++|++++|+ ++++|+|+||+|++||+++|+||||||||||||+|+|+++|+. |+|.++|
T Consensus 1 ml~i~~ls~~~~---------------~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~---G~i~~~~ 62 (530)
T PRK15064 1 MLSTANITMQFG---------------AKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSA---GNVSLDP 62 (530)
T ss_pred CEEEEEEEEEeC---------------CcEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---ceEEecC
Confidence 489999999993 2469999999999999999999999999999999999999864 9999986
Q ss_pred ccCCChhhhcccEEEEccCCCCCCCCCHHHHHHHHHH-hc-----------CCC------------------CCHHHHHH
Q 006897 136 HQIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSAN-FR-----------LKG------------------MSHKEKED 185 (627)
Q Consensus 136 ~~~~~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~-~~-----------~~~------------------~~~~~~~~ 185 (627)
. +.+||++|++.+++.+||+||+.++.. .. ... ....+.++
T Consensus 63 ~---------~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (530)
T PRK15064 63 N---------ERLGKLRQDQFAFEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEA 133 (530)
T ss_pred C---------CEEEEEeccCCcCCCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHH
Confidence 3 348999999988899999999987531 00 000 00012346
Q ss_pred HHHHHHHHcCCccc-----cCCcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEc
Q 006897 186 RVESLMDELGLTHV-----AGSFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSI 242 (627)
Q Consensus 186 ~v~~~l~~lgL~~~-----~~~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~t 242 (627)
++.++++.+||.+. ..+++|||+|| ||+|||+.++..+.+.|++ .|.|||++|
T Consensus 134 ~~~~~l~~~gl~~~~~~~~~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~~~tiiivs 209 (530)
T PRK15064 134 RAGELLLGVGIPEEQHYGLMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE----RNSTMIIIS 209 (530)
T ss_pred HHHHHHHhCCCChhHhcCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh----CCCeEEEEe
Confidence 78899999999642 35577999999 9999999999999999863 478999999
Q ss_pred cCccHHHHHHhhhheeecCCeE-EeeCCHHHHH
Q 006897 243 HQPSYRILQYISKFLILSRGSV-VHYGSLELLE 274 (627)
Q Consensus 243 H~~~~~i~~~~D~i~vL~~G~i-v~~G~~~~~~ 274 (627)
||++ .+.++||++++|++|++ ++.|++++..
T Consensus 210 Hd~~-~~~~~~d~i~~l~~g~i~~~~g~~~~~~ 241 (530)
T PRK15064 210 HDRH-FLNSVCTHMADLDYGELRVYPGNYDEYM 241 (530)
T ss_pred CCHH-HHHhhcceEEEEeCCEEEEecCCHHHHH
Confidence 9998 48899999999999999 4789887654
|
|
| >TIGR02857 CydD thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.8e-29 Score=282.60 Aligned_cols=175 Identities=27% Similarity=0.419 Sum_probs=146.3
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
.|+++||+++|+++ ++++|+|+|+++++||.+||+||||||||||+|+|+|+++|++ |+|.+||
T Consensus 320 ~i~~~~v~f~y~~~-------------~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~---G~I~~~g 383 (529)
T TIGR02857 320 SLEFSGLSVAYPGR-------------RAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTE---GSIAVNG 383 (529)
T ss_pred eEEEEEEEEECCCC-------------CcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCC---cEEEECC
Confidence 59999999999521 2468999999999999999999999999999999999999964 9999999
Q ss_pred ccCCC--hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccc--------------
Q 006897 136 HQIKK--PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHV-------------- 199 (627)
Q Consensus 136 ~~~~~--~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-------------- 199 (627)
.++.+ .+++|+++|||+|++.+|+. |++||+.++. +..+ +++++++++..++++.
T Consensus 384 ~~i~~~~~~~lr~~i~~v~Q~~~lf~~-ti~~Ni~~~~----~~~~----~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e 454 (529)
T TIGR02857 384 VPLADADADSWRDQIAWVPQHPFLFAG-TIAENIRLAR----PDAS----DAEIRRALERAGLDEFVAALPQGLDTLIGE 454 (529)
T ss_pred EehhhCCHHHHHhheEEEcCCCcccCc-CHHHHHhccC----CCCC----HHHHHHHHHHcCcHHHHHhCcccccchhcc
Confidence 98743 46789999999999999975 9999998752 1112 3456677777766532
Q ss_pred -cCCcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheee
Q 006897 200 -AGSFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLIL 259 (627)
Q Consensus 200 -~~~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL 259 (627)
...++|||||| |||+||+.+++.+.+.|+++. .++|+|++||+++ ..+.||+|++|
T Consensus 455 ~g~~LSgGq~qri~laRal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~--~~~~~d~i~~l 529 (529)
T TIGR02857 455 GGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEALVTEALRALA--QGRTVLLVTHRLA--LAERADRIVVL 529 (529)
T ss_pred ccccCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHhc--CCCEEEEEecCHH--HHHhCCEEEeC
Confidence 23456999999 999999999999999999985 4799999999997 35789999876
|
Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD |
| >cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.1e-29 Score=243.82 Aligned_cols=156 Identities=29% Similarity=0.544 Sum_probs=129.9
Q ss_pred EEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCcc
Q 006897 58 TVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQ 137 (627)
Q Consensus 58 ~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~ 137 (627)
+++|++++|+ ++.+|+|+||++++||+++|+||||||||||+++|+|+++|++ |+|.++|++
T Consensus 1 ~~~~l~~~~~---------------~~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~---G~v~~~g~~ 62 (180)
T cd03214 1 EVENLSVGYG---------------GRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSS---GEILLDGKD 62 (180)
T ss_pred CeeEEEEEEC---------------CeeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---cEEEECCEE
Confidence 4789999993 2359999999999999999999999999999999999998864 999999988
Q ss_pred CCC--hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCcc----ccCCcCCccccC-
Q 006897 138 IKK--PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTH----VAGSFVGDEENR- 210 (627)
Q Consensus 138 ~~~--~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~----~~~~~~gGe~qr- 210 (627)
+.. ...+++.++|++| +++.+|+++ ....++|||+||
T Consensus 63 ~~~~~~~~~~~~i~~~~q------------------------------------~l~~~gl~~~~~~~~~~LS~G~~qrl 106 (180)
T cd03214 63 LASLSPKELARKIAYVPQ------------------------------------ALELLGLAHLADRPFNELSGGERQRV 106 (180)
T ss_pred CCcCCHHHHHHHHhHHHH------------------------------------HHHHcCCHhHhcCCcccCCHHHHHHH
Confidence 632 3345667899998 233333332 234567899988
Q ss_pred -----------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeC
Q 006897 211 -----------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYG 268 (627)
Q Consensus 211 -----------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G 268 (627)
||+|||+.++..+.+.|++++++.|.|+|++||+++ ++.++||++++|++|++++.|
T Consensus 107 ~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~-~~~~~~d~~~~l~~g~i~~~~ 180 (180)
T cd03214 107 LLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLN-LAARYADRVILLKDGRIVAQG 180 (180)
T ss_pred HHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEecC
Confidence 999999999999999999997644789999999998 478999999999999998654
|
Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. |
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.9e-29 Score=279.89 Aligned_cols=188 Identities=24% Similarity=0.295 Sum_probs=153.7
Q ss_pred ceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEEC
Q 006897 55 CKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVN 134 (627)
Q Consensus 55 ~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~ 134 (627)
++|+++||+++|+. ++.+|+|+||+|++||+++|+||||||||||||+|+|+++|++ |+|.++
T Consensus 5 ~~l~i~~l~~~y~~--------------~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~---G~i~~~ 67 (556)
T PRK11819 5 YIYTMNRVSKVVPP--------------KKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFE---GEARPA 67 (556)
T ss_pred EEEEEeeEEEEeCC--------------CCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---ceEEec
Confidence 47999999999931 2469999999999999999999999999999999999999864 999986
Q ss_pred CccCCChhhhcccEEEEccCCCCCCCCCHHHHHHHHHH-hc-----C------CCCCH----------------------
Q 006897 135 CHQIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSAN-FR-----L------KGMSH---------------------- 180 (627)
Q Consensus 135 g~~~~~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~-~~-----~------~~~~~---------------------- 180 (627)
+. ..+|||+|++.+++.+||.||+.++.. .+ . .....
T Consensus 68 ~~---------~~i~~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (556)
T PRK11819 68 PG---------IKVGYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADA 138 (556)
T ss_pred CC---------CEEEEEecCCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCc
Confidence 41 359999999999999999999987531 00 0 00000
Q ss_pred HHHHHHHHHHHHHcCCcc---ccCCcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEE
Q 006897 181 KEKEDRVESLMDELGLTH---VAGSFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVV 239 (627)
Q Consensus 181 ~~~~~~v~~~l~~lgL~~---~~~~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii 239 (627)
.+.+++++++++.+||.. ....++|||+|| ||++||+.++..+.+.|+++ +.|||
T Consensus 139 ~~~~~~~~~~l~~~gl~~~~~~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~----~~tvi 214 (556)
T PRK11819 139 WDLDSQLEIAMDALRCPPWDAKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDY----PGTVV 214 (556)
T ss_pred cchHHHHHHHHHhCCCCcccCchhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhC----CCeEE
Confidence 012457888999999853 234567999999 99999999999999999876 24999
Q ss_pred EEccCccHHHHHHhhhheeecCCeEE-eeCCHHHH
Q 006897 240 LSIHQPSYRILQYISKFLILSRGSVV-HYGSLELL 273 (627)
Q Consensus 240 ~~tH~~~~~i~~~~D~i~vL~~G~iv-~~G~~~~~ 273 (627)
++|||++ .+.++||++++|++|+++ +.|+.++.
T Consensus 215 iisHd~~-~~~~~~d~i~~l~~g~i~~~~g~~~~~ 248 (556)
T PRK11819 215 AVTHDRY-FLDNVAGWILELDRGRGIPWEGNYSSW 248 (556)
T ss_pred EEeCCHH-HHHhhcCeEEEEeCCEEEEecCCHHHH
Confidence 9999998 488999999999999986 78887754
|
|
| >cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.7e-29 Score=240.01 Aligned_cols=169 Identities=27% Similarity=0.456 Sum_probs=128.4
Q ss_pred EEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCc
Q 006897 57 VTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCH 136 (627)
Q Consensus 57 l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~ 136 (627)
|+++|++++|..+ ...+++|+||++++||+++|+||||||||||+++|+|+++|.+ |+|.++|+
T Consensus 1 l~~~~l~~~~~~~-------------~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~---G~i~~~g~ 64 (171)
T cd03228 1 IEFKNVSFSYPGR-------------PKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTS---GEILIDGV 64 (171)
T ss_pred CEEEEEEEEcCCC-------------CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCC---CEEEECCE
Confidence 4789999999421 1258999999999999999999999999999999999999864 99999998
Q ss_pred cCCC--hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccCCcCCccccCCCCC
Q 006897 137 QIKK--PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAGSFVGDEENRGISG 214 (627)
Q Consensus 137 ~~~~--~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~gGe~qrPtsg 214 (627)
++.. ...+++.++|++|++.+++ .|+.||+ + +..+ ++++. +...+-.+ .+-++-.| ||+|
T Consensus 65 ~~~~~~~~~~~~~i~~~~~~~~~~~-~t~~e~l-L---------S~G~-~~rl~-la~al~~~--p~llllDE---P~~g 126 (171)
T cd03228 65 DLRDLDLESLRKNIAYVPQDPFLFS-GTIRENI-L---------SGGQ-RQRIA-IARALLRD--PPILILDE---ATSA 126 (171)
T ss_pred EhhhcCHHHHHhhEEEEcCCchhcc-chHHHHh-h---------CHHH-HHHHH-HHHHHhcC--CCEEEEEC---CCcC
Confidence 7532 2355678999999998887 5999998 1 1111 11221 11111111 01111122 9999
Q ss_pred CCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCe
Q 006897 215 LDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGS 263 (627)
Q Consensus 215 LD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~ 263 (627)
||+.++.++.+.|+++. + ++|||++||+++ ++.. ||++++|++|+
T Consensus 127 LD~~~~~~l~~~l~~~~-~-~~tii~~sh~~~-~~~~-~d~~~~l~~g~ 171 (171)
T cd03228 127 LDPETEALILEALRALA-K-GKTVIVIAHRLS-TIRD-ADRIIVLDDGR 171 (171)
T ss_pred CCHHHHHHHHHHHHHhc-C-CCEEEEEecCHH-HHHh-CCEEEEEcCCC
Confidence 99999999999999985 3 689999999998 4665 99999999985
|
They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.1e-29 Score=309.43 Aligned_cols=190 Identities=21% Similarity=0.268 Sum_probs=162.5
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
.|+++||+++|+++ ...+|+||||+|++||.+||+|+||||||||+++|.|+++|++ |+|.+||
T Consensus 1308 ~I~f~nVsf~Y~~~-------------~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~---G~I~IDG 1371 (1560)
T PTZ00243 1308 SLVFEGVQMRYREG-------------LPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCG---GEIRVNG 1371 (1560)
T ss_pred eEEEEEEEEEeCCC-------------CCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---cEEEECC
Confidence 59999999999532 2359999999999999999999999999999999999999864 9999999
Q ss_pred ccCCC--hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCcccc-------------
Q 006897 136 HQIKK--PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVA------------- 200 (627)
Q Consensus 136 ~~~~~--~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~------------- 200 (627)
.++.+ .+++|+.||||||++.+|+. ||+|||.... +..++++.++++.+|+++..
T Consensus 1372 ~di~~i~l~~LR~~I~iVpQdp~LF~g-TIreNIdp~~---------~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge 1441 (1560)
T PTZ00243 1372 REIGAYGLRELRRQFSMIPQDPVLFDG-TVRQNVDPFL---------EASSAEVWAALELVGLRERVASESEGIDSRVLE 1441 (1560)
T ss_pred EEcccCCHHHHHhcceEECCCCccccc-cHHHHhCccc---------CCCHHHHHHHHHHCCChHHHhhCcccccccccC
Confidence 99743 56899999999999999987 9999996421 11245688888888876432
Q ss_pred --CCcCCccccC-------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheee
Q 006897 201 --GSFVGDEENR-------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLIL 259 (627)
Q Consensus 201 --~~~~gGe~qr-------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL 259 (627)
..++|||||| |||+||+.+.+.|.+.|++.. .++|+|+|+|+++ ....||+|++|
T Consensus 1442 ~G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~--~~~TvI~IAHRl~--ti~~~DrIlVL 1517 (1560)
T PTZ00243 1442 GGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAF--SAYTVITIAHRLH--TVAQYDKIIVM 1517 (1560)
T ss_pred CcCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHHHHC--CCCEEEEEeccHH--HHHhCCEEEEE
Confidence 2456899998 899999999999999999864 4799999999997 45779999999
Q ss_pred cCCeEEeeCCHHHHHH
Q 006897 260 SRGSVVHYGSLELLEE 275 (627)
Q Consensus 260 ~~G~iv~~G~~~~~~~ 275 (627)
++|++++.|+++++.+
T Consensus 1518 d~G~VvE~Gt~~eLl~ 1533 (1560)
T PTZ00243 1518 DHGAVAEMGSPRELVM 1533 (1560)
T ss_pred ECCEEEEECCHHHHHh
Confidence 9999999999998854
|
|
| >COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.9e-28 Score=238.89 Aligned_cols=206 Identities=22% Similarity=0.293 Sum_probs=167.2
Q ss_pred eEEEEeEEEEEccCcccc--------ccc-ccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCC
Q 006897 56 KVTVRNLSYAIQPNTSIL--------SHL-LHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDF 126 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~--------~~~-~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~ 126 (627)
.|+++||++.|....... ..+ .........+|+||||++++||.+||||+||||||||||+|+|.++|+.
T Consensus 3 ~I~~~~V~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~- 81 (249)
T COG1134 3 VIKVSNVSKKFRIYHEKSYSLKKRLKGLAKGGRKVAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTS- 81 (249)
T ss_pred EEEeeceeEEEecchhhhhhHHHHHHHHhcCCCCcceEEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCC-
Confidence 689999999996432100 011 1113455679999999999999999999999999999999999999975
Q ss_pred ccceEEECCccCCChhhhcccEEEEcc-CCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccCCcC-
Q 006897 127 DPRSITVNCHQIKKPAQLRKICGFVAQ-EDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAGSFV- 204 (627)
Q Consensus 127 ~~G~i~i~g~~~~~~~~~r~~ig~v~Q-~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~- 204 (627)
|+|.++|+- +.+.. ...+-|.+|.+||+.+...+ .++++++.+++++++++.-+|.+..+.++
T Consensus 82 --G~v~v~G~v-----------~~li~lg~Gf~pelTGreNi~l~~~~--~G~~~~ei~~~~~eIieFaELG~fi~~Pvk 146 (249)
T COG1134 82 --GKVKVTGKV-----------APLIELGAGFDPELTGRENIYLRGLI--LGLTRKEIDEKVDEIIEFAELGDFIDQPVK 146 (249)
T ss_pred --ceEEEcceE-----------ehhhhcccCCCcccchHHHHHHHHHH--hCccHHHHHHHHHHHHHHHHHHHHhhCchh
Confidence 999999864 11111 12456789999999997643 46788999999999999999988877654
Q ss_pred ---CccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCe
Q 006897 205 ---GDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGS 263 (627)
Q Consensus 205 ---gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~ 263 (627)
.|++-| -++-.|+.=+++-.+.++++.++ ++|||++|||++. +.++|||+++|++|+
T Consensus 147 tYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~~~rl~e~~~~-~~tiv~VSHd~~~-I~~~Cd~~i~l~~G~ 224 (249)
T COG1134 147 TYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVEK-NKTIVLVSHDLGA-IKQYCDRAIWLEHGQ 224 (249)
T ss_pred hccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHHHHHHHHHHHc-CCEEEEEECCHHH-HHHhcCeeEEEeCCE
Confidence 677666 35778999999999999999654 6999999999995 999999999999999
Q ss_pred EEeeCCHHHHHHHHHh
Q 006897 264 VVHYGSLELLEETINN 279 (627)
Q Consensus 264 iv~~G~~~~~~~~~~~ 279 (627)
+...|+++++.+.+..
T Consensus 225 i~~~G~~~~vi~~Y~~ 240 (249)
T COG1134 225 IRMEGSPEEVIPAYEE 240 (249)
T ss_pred EEEcCCHHHHHHHHHH
Confidence 9999999999877654
|
|
| >TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.9e-29 Score=248.91 Aligned_cols=174 Identities=22% Similarity=0.387 Sum_probs=143.1
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCccCCChhhhcccEEEEccCCCCC--CCCCHHHHHHH
Q 006897 92 FEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKKPAQLRKICGFVAQEDNLL--PLLTVKETLMF 169 (627)
Q Consensus 92 l~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~~~~~~~~r~~ig~v~Q~~~l~--~~lTV~e~l~~ 169 (627)
|++++||+++|+||||||||||+++|+|+++|++ |+|.++|+++ ...++.++|++|++.++ ..+|+.||+.+
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g~~~---~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~ 74 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAK---GTVKVAGASP---GKGWRHIGYVPQRHEFAWDFPISVAHTVMS 74 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCC---ceEEECCccc---hHhhCcEEEecccccccCCCCccHHHHHHh
Confidence 5789999999999999999999999999998864 9999999874 23467899999998763 34799999987
Q ss_pred HHHhcCC--CCCHHHHHHHHHHHHHHcCCccccC----CcCCccccC------------------CCCCCCHHHHHHHHH
Q 006897 170 SANFRLK--GMSHKEKEDRVESLMDELGLTHVAG----SFVGDEENR------------------GISGLDSTSALQVIE 225 (627)
Q Consensus 170 ~~~~~~~--~~~~~~~~~~v~~~l~~lgL~~~~~----~~~gGe~qr------------------PtsgLD~~~~~~i~~ 225 (627)
+...... ....++.++++.++++.+|+++..+ .++|||+|| ||+|||+.++..+.+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~l~~ 154 (223)
T TIGR03771 75 GRTGHIGWLRRPCVADFAAVRDALRRVGLTELADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTE 154 (223)
T ss_pred ccccccccccCCcHHHHHHHHHHHHHhCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH
Confidence 5321100 0122334567899999999976554 456999998 999999999999999
Q ss_pred HHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeCCHHHHH
Q 006897 226 LLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGSLELLE 274 (627)
Q Consensus 226 ~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~ 274 (627)
.|+++++ .|+|+|++||+++ ++.++||+++++ +|++++.|+++++.
T Consensus 155 ~l~~~~~-~~~tvii~sH~~~-~~~~~~d~i~~l-~G~i~~~~~~~~~~ 200 (223)
T TIGR03771 155 LFIELAG-AGTAILMTTHDLA-QAMATCDRVVLL-NGRVIADGTPQQLQ 200 (223)
T ss_pred HHHHHHH-cCCEEEEEeCCHH-HHHHhCCEEEEE-CCEEEeecCHHHhc
Confidence 9999975 4899999999998 588999999999 79999999987763
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown. |
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.6e-29 Score=276.89 Aligned_cols=197 Identities=17% Similarity=0.264 Sum_probs=153.4
Q ss_pred cceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEE
Q 006897 54 TCKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITV 133 (627)
Q Consensus 54 ~~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i 133 (627)
..+|+++|+++.|+ ++.+|+|+||++++||+++|+||||||||||+|+|+|+.++. ..|+|.+
T Consensus 258 ~~~l~~~~l~~~~~---------------~~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~--~~G~i~~ 320 (490)
T PRK10938 258 EPRIVLNNGVVSYN---------------DRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQG--YSNDLTL 320 (490)
T ss_pred CceEEEeceEEEEC---------------CeeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcc--cCCeEEE
Confidence 35799999999993 235999999999999999999999999999999999987641 1399999
Q ss_pred CCccCCC---hhhhcccEEEEccCCCCCC--CCCHHHHHHHHHHh--cCCCCCHHHHHHHHHHHHHHcCCcc-ccC----
Q 006897 134 NCHQIKK---PAQLRKICGFVAQEDNLLP--LLTVKETLMFSANF--RLKGMSHKEKEDRVESLMDELGLTH-VAG---- 201 (627)
Q Consensus 134 ~g~~~~~---~~~~r~~ig~v~Q~~~l~~--~lTV~e~l~~~~~~--~~~~~~~~~~~~~v~~~l~~lgL~~-~~~---- 201 (627)
+|+++.. ....++.+||++|++.++. ..++.+++.++... .......++.+++++++++.+||.+ ..+
T Consensus 321 ~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 400 (490)
T PRK10938 321 FGRRRGSGETIWDIKKHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTADAPFH 400 (490)
T ss_pred ecccCCCCCCHHHHHhhceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhccCchh
Confidence 9986422 1235678999999876543 34777776543210 0111112334567899999999986 554
Q ss_pred CcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHH-HhhhheeecCC
Q 006897 202 SFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQ-YISKFLILSRG 262 (627)
Q Consensus 202 ~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~-~~D~i~vL~~G 262 (627)
.++|||+|| ||+|||+.++..+.+.|++++++.+.|||++|||++ ++.+ +||++++|++|
T Consensus 401 ~LSgGq~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~-~~~~~~~d~v~~l~~G 479 (490)
T PRK10938 401 SLSWGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAE-DAPACITHRLEFVPDG 479 (490)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchh-hhhhhhheeEEEecCC
Confidence 456999999 999999999999999999998753457999999998 4766 59999999999
Q ss_pred eEEeeC
Q 006897 263 SVVHYG 268 (627)
Q Consensus 263 ~iv~~G 268 (627)
++++.-
T Consensus 480 ~i~~~~ 485 (490)
T PRK10938 480 DIYRYV 485 (490)
T ss_pred ceEEee
Confidence 988753
|
|
| >TIGR01166 cbiO cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.3e-29 Score=241.31 Aligned_cols=156 Identities=28% Similarity=0.466 Sum_probs=130.5
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCccCCC----hhhhcccEEEEccCCC--C
Q 006897 84 LHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKK----PAQLRKICGFVAQEDN--L 157 (627)
Q Consensus 84 ~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~~~~----~~~~r~~ig~v~Q~~~--l 157 (627)
+.+|+|+||++++||+++|+||||||||||+++|+|+++|++ |+|.++|+++.. ...+++.++|++|++. +
T Consensus 5 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~---G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 81 (190)
T TIGR01166 5 PEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQS---GAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQL 81 (190)
T ss_pred cceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCc---eeEEECCEEccccccchHHHHhhEEEEecChhhcc
Confidence 469999999999999999999999999999999999998864 999999988631 1245678999999973 4
Q ss_pred CCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccCC----cCCccccC------------------CCCCC
Q 006897 158 LPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAGS----FVGDEENR------------------GISGL 215 (627)
Q Consensus 158 ~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~----~~gGe~qr------------------PtsgL 215 (627)
+ ..||+||+.+..... +.+.++.+++++++++.+||++..++ ++|||+|| ||+||
T Consensus 82 ~-~~tv~~nl~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~L 158 (190)
T TIGR01166 82 F-AADVDQDVAFGPLNL--GLSEAEVERRVREALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGL 158 (190)
T ss_pred c-cccHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHcCchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccC
Confidence 5 469999999865322 23445556778999999999765544 45999998 99999
Q ss_pred CHHHHHHHHHHHHHHHHcCCCEEEEEccCcc
Q 006897 216 DSTSALQVIELLASMAKAKQRTVVLSIHQPS 246 (627)
Q Consensus 216 D~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~ 246 (627)
|+.++..+.+.|+++++ +|+|||++||+++
T Consensus 159 D~~~~~~~~~~l~~~~~-~~~tili~sH~~~ 188 (190)
T TIGR01166 159 DPAGREQMLAILRRLRA-EGMTVVISTHDVD 188 (190)
T ss_pred CHHHHHHHHHHHHHHHH-cCCEEEEEeeccc
Confidence 99999999999999976 4899999999986
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux. |
| >TIGR02868 CydC thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.5e-29 Score=280.89 Aligned_cols=162 Identities=25% Similarity=0.432 Sum_probs=136.9
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
.|+++||+|+|++ ++++|+|+||++++||.+||+||||||||||+|+|+|+++|++ |+|.+||
T Consensus 334 ~I~~~~vsf~Y~~--------------~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~---G~I~i~g 396 (529)
T TIGR02868 334 TLELRDLSFGYPG--------------SPPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQ---GEVTLDG 396 (529)
T ss_pred eEEEEEEEEecCC--------------CCceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCC---cEEEECC
Confidence 5999999999942 1349999999999999999999999999999999999999964 9999999
Q ss_pred ccCCC-hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCcccc--------------
Q 006897 136 HQIKK-PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVA-------------- 200 (627)
Q Consensus 136 ~~~~~-~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~-------------- 200 (627)
.++.+ .+++|+++|||||++.+|+. |++|||.++. + +..+++++++++..++++..
T Consensus 397 ~~i~~~~~~lr~~i~~V~Q~~~lF~~-TI~eNI~~g~----~----~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~ 467 (529)
T TIGR02868 397 VSVSSLQDELRRRISVFAQDAHLFDT-TVRDNLRLGR----P----DATDEELWAALERVGLADWLRSLPDGLDTVLGEG 467 (529)
T ss_pred EEhhhHHHHHHhheEEEccCcccccc-cHHHHHhccC----C----CCCHHHHHHHHHHcCCHHHHHhCcccccchhccc
Confidence 88633 56788999999999999987 9999999862 1 12345577788887775432
Q ss_pred -CCcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCc
Q 006897 201 -GSFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQP 245 (627)
Q Consensus 201 -~~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~ 245 (627)
..++|||||| |||+||+.+++.+.+.|+++. .++|+|++||++
T Consensus 468 G~~LSGGQrQRiaiARall~~~~iliLDE~TSaLD~~te~~I~~~l~~~~--~~~TvIiItHrl 529 (529)
T TIGR02868 468 GARLSGGERQRLALARALLADAPILLLDEPTEHLDAGTESELLEDLLAAL--SGKTVVVITHHL 529 (529)
T ss_pred cCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhc--CCCEEEEEecCC
Confidence 2356999999 999999999999999999874 479999999985
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. |
| >cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-28 Score=234.65 Aligned_cols=159 Identities=22% Similarity=0.354 Sum_probs=121.4
Q ss_pred EEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCc
Q 006897 57 VTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCH 136 (627)
Q Consensus 57 l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~ 136 (627)
|+++|++++|+ ++++++|+||++++||+++|+||||||||||+++|+|+++|++ |+|.++|+
T Consensus 1 l~~~~l~~~~~---------------~~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~---G~v~~~g~ 62 (163)
T cd03216 1 LELRGITKRFG---------------GVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDS---GEILVDGK 62 (163)
T ss_pred CEEEEEEEEEC---------------CeEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---eEEEECCE
Confidence 47899999993 2359999999999999999999999999999999999999864 99999998
Q ss_pred cCCC--h-hhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccCCcCCccccCCCC
Q 006897 137 QIKK--P-AQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAGSFVGDEENRGIS 213 (627)
Q Consensus 137 ~~~~--~-~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~gGe~qrPts 213 (627)
++.. . ...++.++|++| +| ..+. +++.=+...+. + .+-++-. .||+
T Consensus 63 ~~~~~~~~~~~~~~i~~~~q-------LS-----------------~G~~-qrl~laral~~-~--p~illlD---EP~~ 111 (163)
T cd03216 63 EVSFASPRDARRAGIAMVYQ-------LS-----------------VGER-QMVEIARALAR-N--ARLLILD---EPTA 111 (163)
T ss_pred ECCcCCHHHHHhcCeEEEEe-------cC-----------------HHHH-HHHHHHHHHhc-C--CCEEEEE---CCCc
Confidence 8643 2 235678999999 11 1111 11111111110 0 0001111 2999
Q ss_pred CCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEe
Q 006897 214 GLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVH 266 (627)
Q Consensus 214 gLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~ 266 (627)
|||+.+++.+.+.|+++++ +|.|+|++|||++ ++.+.||++++|++|++++
T Consensus 112 ~LD~~~~~~l~~~l~~~~~-~~~tiii~sh~~~-~~~~~~d~~~~l~~g~i~~ 162 (163)
T cd03216 112 ALTPAEVERLFKVIRRLRA-QGVAVIFISHRLD-EVFEIADRVTVLRDGRVVG 162 (163)
T ss_pred CCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEe
Confidence 9999999999999999975 4899999999998 4788999999999999875
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=99.96 E-value=7e-29 Score=244.92 Aligned_cols=170 Identities=24% Similarity=0.426 Sum_probs=132.0
Q ss_pred EEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCc
Q 006897 57 VTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCH 136 (627)
Q Consensus 57 l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~ 136 (627)
|+++||+++|..+. ...+.+|+|+||++++||+++|+||||||||||+++|+|+.+|++ |+|.++|
T Consensus 1 l~~~~l~~~~~~~~----------~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~---G~i~~~g- 66 (204)
T cd03250 1 ISVEDASFTWDSGE----------QETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLS---GSVSVPG- 66 (204)
T ss_pred CEEeEEEEecCCCC----------ccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCC---CeEEEcC-
Confidence 47899999994210 001359999999999999999999999999999999999998864 9999988
Q ss_pred cCCChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCC-----------c----cccC
Q 006897 137 QIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGL-----------T----HVAG 201 (627)
Q Consensus 137 ~~~~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL-----------~----~~~~ 201 (627)
+++|++|++.+++ .|++||+.+... ...+ +..+.++.+++ + ....
T Consensus 67 ----------~i~~~~q~~~l~~-~t~~enl~~~~~-----~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 126 (204)
T cd03250 67 ----------SIAYVSQEPWIQN-GTIRENILFGKP-----FDEE----RYEKVIKACALEPDLEILPDGDLTEIGEKGI 126 (204)
T ss_pred ----------EEEEEecCchhcc-CcHHHHhccCCC-----cCHH----HHHHHHHHcCcHHHHHhccCcccceecCCCC
Confidence 5999999998885 699999987521 1111 12223333322 2 1234
Q ss_pred CcCCccccC------------------CCCCCCHHHHHHHHH-HHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCC
Q 006897 202 SFVGDEENR------------------GISGLDSTSALQVIE-LLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRG 262 (627)
Q Consensus 202 ~~~gGe~qr------------------PtsgLD~~~~~~i~~-~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G 262 (627)
.++|||+|| ||+|||+.+++.+.+ +++++.+ .|+|||++||+++ .+.. ||++++|++|
T Consensus 127 ~lS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~-~~~tvi~~sh~~~-~~~~-~d~i~~l~~G 203 (204)
T cd03250 127 NLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLL-NNKTRILVTHQLQ-LLPH-ADQIVVLDNG 203 (204)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhcc-CCCEEEEEeCCHH-HHhh-CCEEEEEeCC
Confidence 567999998 999999999999998 4666654 4899999999997 3665 9999999998
Q ss_pred e
Q 006897 263 S 263 (627)
Q Consensus 263 ~ 263 (627)
+
T Consensus 204 ~ 204 (204)
T cd03250 204 R 204 (204)
T ss_pred C
Confidence 5
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.5e-29 Score=302.87 Aligned_cols=189 Identities=23% Similarity=0.377 Sum_probs=152.4
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEEC-
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVN- 134 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~- 134 (627)
.|+++||+++|+.+ .++++|+|+||+|++||++||+||||||||||+++|+|+++|++ |+|.++
T Consensus 382 ~I~~~nVsf~Y~~~------------~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~---G~I~i~~ 446 (1466)
T PTZ00265 382 KIQFKNVRFHYDTR------------KDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTE---GDIIIND 446 (1466)
T ss_pred cEEEEEEEEEcCCC------------CCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccCCC---CeEEEeC
Confidence 59999999999522 12469999999999999999999999999999999999999964 999994
Q ss_pred CccCC--ChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcC---------CC--C-----------------------
Q 006897 135 CHQIK--KPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRL---------KG--M----------------------- 178 (627)
Q Consensus 135 g~~~~--~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~---------~~--~----------------------- 178 (627)
|+++. +...+|++||||+|++.+|+. ||+|||.++..... .. .
T Consensus 447 g~~i~~~~~~~lr~~Ig~V~Q~~~LF~~-TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 525 (1466)
T PTZ00265 447 SHNLKDINLKWWRSKIGVVSQDPLLFSN-SIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDM 525 (1466)
T ss_pred CcchhhCCHHHHHHhccEecccccchhc-cHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhc
Confidence 67753 245678899999999999985 99999998631000 00 0
Q ss_pred ---------------CHHHHHHHHHHHHHHcCCccc---------------cCCcCCccccC------------------
Q 006897 179 ---------------SHKEKEDRVESLMDELGLTHV---------------AGSFVGDEENR------------------ 210 (627)
Q Consensus 179 ---------------~~~~~~~~v~~~l~~lgL~~~---------------~~~~~gGe~qr------------------ 210 (627)
.....++++.++++.+++++. ...++||||||
T Consensus 526 ~~~~~~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P~ILlLDE 605 (1466)
T PTZ00265 526 SNTTDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDE 605 (1466)
T ss_pred ccccchhhhhhcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 001124568888888877543 23466999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCC
Q 006897 211 GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRG 262 (627)
Q Consensus 211 PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G 262 (627)
||++||+.++..+.+.|+++.++.|+|+|+++|+++. + +.||+|++|++|
T Consensus 606 pTSaLD~~se~~i~~~L~~~~~~~g~TvIiIsHrls~-i-~~aD~Iivl~~g 655 (1466)
T PTZ00265 606 ATSSLDNKSEYLVQKTINNLKGNENRITIIIAHRLST-I-RYANTIFVLSNR 655 (1466)
T ss_pred cccccCHHHHHHHHHHHHHHhhcCCCEEEEEeCCHHH-H-HhCCEEEEEeCC
Confidence 9999999999999999999975458999999999983 4 789999999986
|
|
| >TIGR01194 cyc_pep_trnsptr cyclic peptide transporter | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.7e-29 Score=279.63 Aligned_cols=184 Identities=14% Similarity=0.239 Sum_probs=152.6
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
.|+++||+++|++++ ...+.+|+|+||++++||++||+||||||||||+++|+|+++|++ |+|.++|
T Consensus 337 ~i~~~~v~f~y~~~~----------~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~---G~i~~~g 403 (555)
T TIGR01194 337 SIELKDVHMNPKAPE----------GSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQE---GEILLDG 403 (555)
T ss_pred eEEEEEEEEEeCCCC----------CCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCC---cEEEECC
Confidence 599999999995321 012359999999999999999999999999999999999999864 9999999
Q ss_pred ccCCC--hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCcccc----------CCc
Q 006897 136 HQIKK--PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVA----------GSF 203 (627)
Q Consensus 136 ~~~~~--~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~----------~~~ 203 (627)
.++.+ ..++|+.++||+|++.+|.. |+++|.. ++..+++++++++.+++++.. ..+
T Consensus 404 ~~i~~~~~~~~~~~i~~v~q~~~lf~~-ti~~n~~-----------~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~L 471 (555)
T TIGR01194 404 AAVSADSRDDYRDLFSAIFADFHLFDD-LIGPDEG-----------EHASLDNAQQYLQRLEIADKVKIEDGGFSTTTAL 471 (555)
T ss_pred EECCCCCHHHHHhhCcEEccChhhhhh-hhhcccc-----------cchhHHHHHHHHHHcCCchhhcccccccCCcccC
Confidence 98743 45688899999999999976 8888841 123355688899999987643 246
Q ss_pred CCccccC------------------CCCCCCHHHHHHHHHHHH-HHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeE
Q 006897 204 VGDEENR------------------GISGLDSTSALQVIELLA-SMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSV 264 (627)
Q Consensus 204 ~gGe~qr------------------PtsgLD~~~~~~i~~~L~-~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~i 264 (627)
+|||||| ||++||+.+++.+.+.+. .+. ..|+|+|++||+++ ..+.||+|++|++|++
T Consensus 472 SgGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~-~~~~tiiiisH~~~--~~~~~d~i~~l~~G~i 548 (555)
T TIGR01194 472 STGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLK-RQGKTIIIISHDDQ--YFELADQIIKLAAGCI 548 (555)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHH-hCCCEEEEEeccHH--HHHhCCEEEEEECCEE
Confidence 7999999 999999999999998664 443 35899999999997 4678999999999999
Q ss_pred Eee
Q 006897 265 VHY 267 (627)
Q Consensus 265 v~~ 267 (627)
++.
T Consensus 549 ~~~ 551 (555)
T TIGR01194 549 VKD 551 (555)
T ss_pred EEe
Confidence 864
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake. |
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.3e-28 Score=276.01 Aligned_cols=189 Identities=24% Similarity=0.268 Sum_probs=152.5
Q ss_pred ceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEEC
Q 006897 55 CKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVN 134 (627)
Q Consensus 55 ~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~ 134 (627)
.+|+++||+++|++ ++.+|+|+||+|++||+++|+|||||||||||++|+|+++|++ |+|.++
T Consensus 3 ~~i~~~nls~~~~~--------------~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~---G~i~~~ 65 (552)
T TIGR03719 3 YIYTMNRVSKVVPP--------------KKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFN---GEARPA 65 (552)
T ss_pred EEEEEeeEEEecCC--------------CCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---ceEEec
Confidence 37999999999931 2469999999999999999999999999999999999998864 999986
Q ss_pred CccCCChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHh-cC-----------CCCCHHH--------------------
Q 006897 135 CHQIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANF-RL-----------KGMSHKE-------------------- 182 (627)
Q Consensus 135 g~~~~~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~-~~-----------~~~~~~~-------------------- 182 (627)
+ +..+|||+|++.+++.+||+||+.++... +. ......+
T Consensus 66 ~---------~~~i~~v~Q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (552)
T TIGR03719 66 P---------GIKVGYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADA 136 (552)
T ss_pred C---------CCEEEEEeccCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCc
Confidence 4 24599999999999999999999875321 00 0000010
Q ss_pred --HHHHHHHHHHHcCCcc---ccCCcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEE
Q 006897 183 --KEDRVESLMDELGLTH---VAGSFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVV 239 (627)
Q Consensus 183 --~~~~v~~~l~~lgL~~---~~~~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii 239 (627)
..+++.++++.+|++. ....++|||+|| ||++||+.++..+.+.|+++ +.|||
T Consensus 137 ~~~~~~~~~~l~~~~l~~~~~~~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~----~~tvI 212 (552)
T TIGR03719 137 WDLDRKLEIAMDALRCPPWDADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEY----PGTVV 212 (552)
T ss_pred chhHHHHHHHHhhCCCCcccCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhC----CCeEE
Confidence 1245677888888843 335667999999 99999999999999999875 35999
Q ss_pred EEccCccHHHHHHhhhheeecCCeEE-eeCCHHHHH
Q 006897 240 LSIHQPSYRILQYISKFLILSRGSVV-HYGSLELLE 274 (627)
Q Consensus 240 ~~tH~~~~~i~~~~D~i~vL~~G~iv-~~G~~~~~~ 274 (627)
++|||++ .+..+||++++|++|+++ +.|+.+++.
T Consensus 213 iisHd~~-~~~~~~d~v~~l~~g~i~~~~g~~~~~~ 247 (552)
T TIGR03719 213 AVTHDRY-FLDNVAGWILELDRGRGIPWEGNYSSWL 247 (552)
T ss_pred EEeCCHH-HHHhhcCeEEEEECCEEEEecCCHHHHH
Confidence 9999998 488899999999999976 778887643
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.8e-29 Score=235.46 Aligned_cols=197 Identities=24% Similarity=0.411 Sum_probs=157.5
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
|++++|+++.+.... ..++++|+++|++|.+|+++.|+|.||||||||+++|+|.+.|++ |+|.++|
T Consensus 1 Mi~~~~~~~~f~~g~----------~~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~---G~I~Idg 67 (263)
T COG1101 1 MISLSNATKTFFKGT----------PLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTS---GQILIDG 67 (263)
T ss_pred CcccccceeeecCCC----------hhHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccCC---ceEEECc
Confidence 356778887774332 245789999999999999999999999999999999999999975 9999999
Q ss_pred ccCCCh--hhhcccEEEEccCC--CCCCCCCHHHHHHHHHHhcCC--CCCH---HHHHHHHHHHHHHcC--Ccccc----
Q 006897 136 HQIKKP--AQLRKICGFVAQED--NLLPLLTVKETLMFSANFRLK--GMSH---KEKEDRVESLMDELG--LTHVA---- 200 (627)
Q Consensus 136 ~~~~~~--~~~r~~ig~v~Q~~--~l~~~lTV~e~l~~~~~~~~~--~~~~---~~~~~~v~~~l~~lg--L~~~~---- 200 (627)
.++.+. .+....++-|||++ ...+.||+.||+.++.. |.. +... ...++...+-++.++ |++..
T Consensus 68 ~dVtk~~~~~RA~~larVfQdp~~gt~~~lTieENl~la~~-Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~i 146 (263)
T COG1101 68 VDVTKKSVAKRANLLARVFQDPLAGTAPELTIEENLALAES-RGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRI 146 (263)
T ss_pred eecccCCHHHHhhHHHHHhcchhhCCcccccHHHHHHHHHh-cCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChh
Confidence 997542 23335688999996 46899999999998753 321 2222 233444555566654 44444
Q ss_pred CCcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCC
Q 006897 201 GSFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRG 262 (627)
Q Consensus 201 ~~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G 262 (627)
+.++|||||- -|++|||.+++.++++-.++.++.+.|.+||||+++ ++.++-+|.++|++|
T Consensus 147 glLSGGQRQalsL~MAtl~~pkiLLLDEHTAALDPkta~~vm~lT~kiV~~~klTtlMVTHnm~-~Al~yG~RlImLh~G 225 (263)
T COG1101 147 GLLSGGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNME-DALDYGNRLIMLHSG 225 (263)
T ss_pred hhccchHHHHHHHHHHhcCCCcEEEecchhhcCCcchHHHHHHHHHHHHHhcCCceEEEeccHH-HHHhhCCeEEEEeCC
Confidence 3456999986 489999999999999999999999999999999999 589999999999999
Q ss_pred eEEee
Q 006897 263 SVVHY 267 (627)
Q Consensus 263 ~iv~~ 267 (627)
+|+.+
T Consensus 226 ~IvlD 230 (263)
T COG1101 226 KIVLD 230 (263)
T ss_pred eEEEE
Confidence 99975
|
|
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.6e-28 Score=273.68 Aligned_cols=195 Identities=19% Similarity=0.353 Sum_probs=156.9
Q ss_pred ceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEEC
Q 006897 55 CKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVN 134 (627)
Q Consensus 55 ~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~ 134 (627)
.+|+++||++.+ +.+|+|+||++++||++||+||||||||||+|+|+|+.+|++ |+|.++
T Consensus 249 ~~i~~~~l~~~~-----------------~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~---G~i~~~ 308 (491)
T PRK10982 249 VILEVRNLTSLR-----------------QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSA---GTITLH 308 (491)
T ss_pred cEEEEeCccccc-----------------CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCc---cEEEEC
Confidence 479999999864 148999999999999999999999999999999999999864 999999
Q ss_pred CccCCC--h-hhhcccEEEEccCC---CCCCCCCHHHHHHHHH-H--hcCCC-CCHHHHHHHHHHHHHHcCCc-ccc---
Q 006897 135 CHQIKK--P-AQLRKICGFVAQED---NLLPLLTVKETLMFSA-N--FRLKG-MSHKEKEDRVESLMDELGLT-HVA--- 200 (627)
Q Consensus 135 g~~~~~--~-~~~r~~ig~v~Q~~---~l~~~lTV~e~l~~~~-~--~~~~~-~~~~~~~~~v~~~l~~lgL~-~~~--- 200 (627)
|+++.. . ..+++.+||++|+. .+++.+|+.+|..+.. . ....+ ..+.+.++++.++++.+++. +..
T Consensus 309 g~~i~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 388 (491)
T PRK10982 309 GKKINNHNANEAINHGFALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQ 388 (491)
T ss_pred CEECCCCCHHHHHHCCCEEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccc
Confidence 987632 1 23466799999985 4688888887743321 0 01111 12334456788999999984 333
Q ss_pred -CCcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecC
Q 006897 201 -GSFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSR 261 (627)
Q Consensus 201 -~~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~ 261 (627)
..++|||||| ||+|||+.++..++++|+++++ .|.|||++|||++ ++.++|||+++|++
T Consensus 389 ~~~LSgGq~qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~-~~~tvi~vsHd~~-~~~~~~d~v~~l~~ 466 (491)
T PRK10982 389 IGSLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAK-KDKGIIIISSEMP-ELLGITDRILVMSN 466 (491)
T ss_pred cccCCcHHHHHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHH-CCCEEEEECCChH-HHHhhCCEEEEEEC
Confidence 4566999999 9999999999999999999976 4899999999998 58899999999999
Q ss_pred CeEEeeCCHH
Q 006897 262 GSVVHYGSLE 271 (627)
Q Consensus 262 G~iv~~G~~~ 271 (627)
|+++..++.+
T Consensus 467 g~i~~~~~~~ 476 (491)
T PRK10982 467 GLVAGIVDTK 476 (491)
T ss_pred CEEEEEEccc
Confidence 9999877553
|
|
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.8e-28 Score=274.20 Aligned_cols=182 Identities=19% Similarity=0.272 Sum_probs=152.0
Q ss_pred ceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEEC
Q 006897 55 CKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVN 134 (627)
Q Consensus 55 ~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~ 134 (627)
.+|+++||+++|+ ++.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++ |+|.++
T Consensus 318 ~~l~~~~l~~~~~---------------~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~---G~i~~~ 379 (530)
T PRK15064 318 NALEVENLTKGFD---------------NGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDS---GTVKWS 379 (530)
T ss_pred ceEEEEeeEEeeC---------------CceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---eEEEEC
Confidence 4799999999993 2459999999999999999999999999999999999998864 999987
Q ss_pred CccCCChhhhcccEEEEccCCC--CCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCc-ccc----CCcCCcc
Q 006897 135 CHQIKKPAQLRKICGFVAQEDN--LLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLT-HVA----GSFVGDE 207 (627)
Q Consensus 135 g~~~~~~~~~r~~ig~v~Q~~~--l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~----~~~~gGe 207 (627)
|+ +.+||++|++. +++.+|+.||+.+.. . . ...+++++++++.+|+. +.. ..++|||
T Consensus 380 ~~---------~~i~~~~q~~~~~~~~~~t~~~~~~~~~---~---~-~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq 443 (530)
T PRK15064 380 EN---------ANIGYYAQDHAYDFENDLTLFDWMSQWR---Q---E-GDDEQAVRGTLGRLLFSQDDIKKSVKVLSGGE 443 (530)
T ss_pred Cc---------eEEEEEcccccccCCCCCcHHHHHHHhc---c---C-CccHHHHHHHHHHcCCChhHhcCcccccCHHH
Confidence 63 45999999863 556789999986421 1 1 12245688999999984 333 4566999
Q ss_pred ccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEE-eeC
Q 006897 208 ENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVV-HYG 268 (627)
Q Consensus 208 ~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv-~~G 268 (627)
+|| ||+|||+.++..+.+.|+++ +.|||++|||++ .+.++||++++|++|+++ +.|
T Consensus 444 ~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~-~~~~~~d~i~~l~~g~i~~~~g 518 (530)
T PRK15064 444 KGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALEKY----EGTLIFVSHDRE-FVSSLATRIIEITPDGVVDFSG 518 (530)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHC----CCEEEEEeCCHH-HHHHhCCEEEEEECCeEEEcCC
Confidence 999 99999999999999999875 349999999998 488899999999999998 789
Q ss_pred CHHHHHH
Q 006897 269 SLELLEE 275 (627)
Q Consensus 269 ~~~~~~~ 275 (627)
+++++.+
T Consensus 519 ~~~~~~~ 525 (530)
T PRK15064 519 TYEEYLR 525 (530)
T ss_pred CHHHHHH
Confidence 8876643
|
|
| >cd03290 ABCC_SUR1_N The SUR domain 1 | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.1e-28 Score=242.78 Aligned_cols=176 Identities=24% Similarity=0.368 Sum_probs=138.1
Q ss_pred EEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCcc
Q 006897 58 TVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQ 137 (627)
Q Consensus 58 ~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~ 137 (627)
.+.|+.+.|+. .+.+++|+||++++||+++|+||||||||||+++|+|+++|++ |+|.++|++
T Consensus 2 ~~~~~~~~~~~--------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~---G~i~~~g~~ 64 (218)
T cd03290 2 QVTNGYFSWGS--------------GLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLE---GKVHWSNKN 64 (218)
T ss_pred eeeeeEEecCC--------------CCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCC---CeEEECCcc
Confidence 57889998842 2469999999999999999999999999999999999998864 999999987
Q ss_pred CCCh------hhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCcc-------------
Q 006897 138 IKKP------AQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTH------------- 198 (627)
Q Consensus 138 ~~~~------~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~------------- 198 (627)
+... ...++.++|++|++.+++ .|++||+.+... ... ++..++++.++|.+
T Consensus 65 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~t~~~nl~~~~~-----~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~ 134 (218)
T cd03290 65 ESEPSFEATRSRNRYSVAYAAQKPWLLN-ATVEENITFGSP-----FNK----QRYKAVTDACSLQPDIDLLPFGDQTEI 134 (218)
T ss_pred cccccccccchhhcceEEEEcCCCcccc-ccHHHHHhhcCc-----CCH----HHHHHHHHHhCcHHHHHhCcCccccCc
Confidence 5321 124567999999998874 699999987521 111 12334455555432
Q ss_pred --ccCCcCCccccC------------------CCCCCCHHHHHHHHH--HHHHHHHcCCCEEEEEccCccHHHHHHhhhh
Q 006897 199 --VAGSFVGDEENR------------------GISGLDSTSALQVIE--LLASMAKAKQRTVVLSIHQPSYRILQYISKF 256 (627)
Q Consensus 199 --~~~~~~gGe~qr------------------PtsgLD~~~~~~i~~--~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i 256 (627)
....++|||+|| ||+|||+.++..+++ +++.+. +.|.|+|++||+++. + ..||++
T Consensus 135 ~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~~ll~~~~-~~~~tii~~sH~~~~-~-~~~d~i 211 (218)
T cd03290 135 GERGINLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQ-DDKRTLVLVTHKLQY-L-PHADWI 211 (218)
T ss_pred ccCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCccccCHHHHHHHHHHHHHHHHh-cCCCEEEEEeCChHH-H-hhCCEE
Confidence 234567999998 999999999999998 666664 458999999999983 5 579999
Q ss_pred eeecCCe
Q 006897 257 LILSRGS 263 (627)
Q Consensus 257 ~vL~~G~ 263 (627)
++|++|.
T Consensus 212 ~~l~~G~ 218 (218)
T cd03290 212 IAMKDGS 218 (218)
T ss_pred EEecCCC
Confidence 9999884
|
The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >cd03291 ABCC_CFTR1 The CFTR subfamily domain 1 | Back alignment and domain information |
|---|
Probab=99.96 E-value=6e-28 Score=249.14 Aligned_cols=177 Identities=24% Similarity=0.392 Sum_probs=140.9
Q ss_pred cceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEE
Q 006897 54 TCKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITV 133 (627)
Q Consensus 54 ~~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i 133 (627)
...|+++|+++.. +.+|+|+||++++||+++|+||||||||||+++|+|+++|.. |+|.+
T Consensus 37 ~~~l~i~nls~~~-----------------~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~---G~I~i 96 (282)
T cd03291 37 DNNLFFSNLCLVG-----------------APVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSE---GKIKH 96 (282)
T ss_pred CCeEEEEEEEEec-----------------ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---cEEEE
Confidence 4469999999841 248999999999999999999999999999999999998864 99998
Q ss_pred CCccCCChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCcc---------------
Q 006897 134 NCHQIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTH--------------- 198 (627)
Q Consensus 134 ~g~~~~~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~--------------- 198 (627)
+| .++|++|++.+++. ||+||+.+.... .. .++.++++.+++.+
T Consensus 97 ~g-----------~i~yv~q~~~l~~~-tv~enl~~~~~~-----~~----~~~~~~l~~~~l~~~l~~~~~~~~~~~~~ 155 (282)
T cd03291 97 SG-----------RISFSSQFSWIMPG-TIKENIIFGVSY-----DE----YRYKSVVKACQLEEDITKFPEKDNTVLGE 155 (282)
T ss_pred CC-----------EEEEEeCccccccc-CHHHHhhccccc-----CH----HHHHHHHHHhCCHHHHHhccccccceecC
Confidence 87 38999999988875 999999875211 11 11222333333321
Q ss_pred ccCCcCCccccC------------------CCCCCCHHHHHHHHHHH-HHHHHcCCCEEEEEccCccHHHHHHhhhheee
Q 006897 199 VAGSFVGDEENR------------------GISGLDSTSALQVIELL-ASMAKAKQRTVVLSIHQPSYRILQYISKFLIL 259 (627)
Q Consensus 199 ~~~~~~gGe~qr------------------PtsgLD~~~~~~i~~~L-~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL 259 (627)
....++|||+|| ||+|||+.++..+.+.+ ++++ .+.|||++||+++. + ..||++++|
T Consensus 156 ~~~~LSgGq~qrv~lAraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~--~~~tIiiisH~~~~-~-~~~d~i~~l 231 (282)
T cd03291 156 GGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLM--ANKTRILVTSKMEH-L-KKADKILIL 231 (282)
T ss_pred CCCcCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHhh--CCCEEEEEeCChHH-H-HhCCEEEEE
Confidence 124677999998 99999999999999865 5554 37899999999984 5 689999999
Q ss_pred cCCeEEeeCCHHHHHH
Q 006897 260 SRGSVVHYGSLELLEE 275 (627)
Q Consensus 260 ~~G~iv~~G~~~~~~~ 275 (627)
++|++++.|+++++.+
T Consensus 232 ~~G~i~~~g~~~~~~~ 247 (282)
T cd03291 232 HEGSSYFYGTFSELQS 247 (282)
T ss_pred ECCEEEEECCHHHHHh
Confidence 9999999999887643
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.7e-28 Score=300.85 Aligned_cols=190 Identities=21% Similarity=0.278 Sum_probs=160.9
Q ss_pred ceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEEC
Q 006897 55 CKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVN 134 (627)
Q Consensus 55 ~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~ 134 (627)
..|+++||+++|++ +.+.+|+||||+|++||.+||+|+||||||||+++|.|+++ . +|+|.+|
T Consensus 1216 g~I~f~nVs~~Y~~-------------~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~-~---~G~I~Id 1278 (1490)
T TIGR01271 1216 GQMDVQGLTAKYTE-------------AGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS-T---EGEIQID 1278 (1490)
T ss_pred CeEEEEEEEEEeCC-------------CCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-C---CcEEEEC
Confidence 36999999999953 23469999999999999999999999999999999999985 3 3999999
Q ss_pred CccCCC--hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCcccc------------
Q 006897 135 CHQIKK--PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVA------------ 200 (627)
Q Consensus 135 g~~~~~--~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~------------ 200 (627)
|.++.+ ...+|++++||||++.+|++ |++|||.... +..++++.++|+.++|.+..
T Consensus 1279 G~di~~i~~~~lR~~is~IpQdp~LF~G-TIR~NLdp~~---------~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~ 1348 (1490)
T TIGR01271 1279 GVSWNSVTLQTWRKAFGVIPQKVFIFSG-TFRKNLDPYE---------QWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLV 1348 (1490)
T ss_pred CEEcccCCHHHHHhceEEEeCCCccCcc-CHHHHhCccc---------CCCHHHHHHHHHHCCCHHHHHhCccccccccc
Confidence 999743 46789999999999999987 9999995421 12346688888888875432
Q ss_pred ---CCcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheee
Q 006897 201 ---GSFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLIL 259 (627)
Q Consensus 201 ---~~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL 259 (627)
..++|||||| |||+||+.+...|.+.|++.. .++|||+|+|+++. ...||||++|
T Consensus 1349 e~G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~--~~~TvI~IaHRl~t--i~~~DrIlvL 1424 (1490)
T TIGR01271 1349 DGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSF--SNCTVILSEHRVEA--LLECQQFLVI 1424 (1490)
T ss_pred cCCCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHc--CCCEEEEEecCHHH--HHhCCEEEEE
Confidence 1356899998 999999999999999999874 47999999999973 4569999999
Q ss_pred cCCeEEeeCCHHHHHH
Q 006897 260 SRGSVVHYGSLELLEE 275 (627)
Q Consensus 260 ~~G~iv~~G~~~~~~~ 275 (627)
++|++++.|+++++.+
T Consensus 1425 ~~G~ivE~g~p~~Ll~ 1440 (1490)
T TIGR01271 1425 EGSSVKQYDSIQKLLN 1440 (1490)
T ss_pred ECCEEEEeCCHHHHHc
Confidence 9999999999998863
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.3e-28 Score=224.39 Aligned_cols=208 Identities=22% Similarity=0.368 Sum_probs=173.1
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
.++++|+++.|..+.+.. ......+++.|||++++|+.+||+|.||||||||.|+|+|.++|++ |+|.+||
T Consensus 4 LLeV~nLsKtF~~~~~lf------~r~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTs---G~il~n~ 74 (267)
T COG4167 4 LLEVRNLSKTFRYRTGLF------RRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTS---GEILIND 74 (267)
T ss_pred hhhhhhhhhhhhhhhhhh------hhhhhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCCC---ceEEECC
Confidence 589999999986543211 1133568999999999999999999999999999999999999975 9999999
Q ss_pred ccCCC--hhhhcccEEEEccCC--CCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCc-ccc----CCcCCc
Q 006897 136 HQIKK--PAQLRKICGFVAQED--NLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLT-HVA----GSFVGD 206 (627)
Q Consensus 136 ~~~~~--~~~~r~~ig~v~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~----~~~~gG 206 (627)
+++.- .....++|-++|||+ .+.|.+.+..-|..++++. ..+..+.+.+++.+-|+.+||- +.+ +.+..|
T Consensus 75 ~~L~~~Dy~~R~k~IRMiFQDpnts~NPRl~iGqiLd~PL~l~-T~~~~~~R~~~i~~TL~~VGL~Pdhan~~~~~la~~ 153 (267)
T COG4167 75 HPLHFGDYSFRSKRIRMIFQDPNTSLNPRLRIGQILDFPLRLN-TDLEPEQRRKQIFETLRMVGLLPDHANYYPHMLAPG 153 (267)
T ss_pred ccccccchHhhhhheeeeecCCccccChhhhhhhHhcchhhhc-ccCChHHHHHHHHHHHHHhccCccccccchhhcCch
Confidence 98632 222346799999996 4778888888888776543 2356677889999999999984 333 344589
Q ss_pred cccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeC
Q 006897 207 EENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYG 268 (627)
Q Consensus 207 e~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G 268 (627)
|+|| ...+||...+.++.++..++.++.|.+-|.++.++.. +.+++|+|+||++|++++.|
T Consensus 154 QKQRVaLARALIL~P~iIIaDeAl~~LD~smrsQl~NL~LeLQek~GiSyiYV~QhlG~-iKHi~D~viVM~EG~vvE~G 232 (267)
T COG4167 154 QKQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHIGM-IKHISDQVLVMHEGEVVERG 232 (267)
T ss_pred hHHHHHHHHHHhcCCcEEEehhhhhhccHHHHHHHHHHHHHHHHHhCceEEEEechhhH-hhhhcccEEEEecCceeecC
Confidence 9999 4689999999999999999999999999999999995 89999999999999999999
Q ss_pred CHHHHH
Q 006897 269 SLELLE 274 (627)
Q Consensus 269 ~~~~~~ 274 (627)
++.++.
T Consensus 233 ~t~~v~ 238 (267)
T COG4167 233 STADVL 238 (267)
T ss_pred Chhhhh
Confidence 998774
|
|
| >PRK13541 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.3e-28 Score=236.47 Aligned_cols=170 Identities=22% Similarity=0.291 Sum_probs=137.6
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
+|+++|++++|. ++.+++ +||++++||+++|+||||||||||+++|+|+.+|++ |+|.++|
T Consensus 1 ~l~~~~l~~~~~---------------~~~l~~-vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g 61 (195)
T PRK13541 1 MLSLHQLQFNIE---------------QKNLFD-LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSS---GNIYYKN 61 (195)
T ss_pred CeEEEEeeEEEC---------------CcEEEE-EEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCC---cEEEECC
Confidence 478999999993 223555 999999999999999999999999999999998864 9999999
Q ss_pred ccCCChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccC----CcCCccccC-
Q 006897 136 HQIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAG----SFVGDEENR- 210 (627)
Q Consensus 136 ~~~~~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~----~~~gGe~qr- 210 (627)
.++.... ++.++|++|+..+++.+||+||+.+..... ...++++++++.+++++..+ .++|||+||
T Consensus 62 ~~i~~~~--~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~-------~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rl 132 (195)
T PRK13541 62 CNINNIA--KPYCTYIGHNLGLKLEMTVFENLKFWSEIY-------NSAETLYAAIHYFKLHDLLDEKCYSLSSGMQKIV 132 (195)
T ss_pred cccChhh--hhhEEeccCCcCCCccCCHHHHHHHHHHhc-------ccHHHHHHHHHHcCCHhhhccChhhCCHHHHHHH
Confidence 8853221 356899999987778899999998864321 12346788899999976544 456999998
Q ss_pred -----------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhh
Q 006897 211 -----------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKF 256 (627)
Q Consensus 211 -----------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i 256 (627)
||+|||+.++..+.+.|++..+ .|+|+|++||+++. + +.+|-+
T Consensus 133 ~la~al~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~-~~~tiii~sh~~~~-i-~~~~~~ 192 (195)
T PRK13541 133 AIARLIACQSDLWLLDEVETNLSKENRDLLNNLIVMKAN-SGGIVLLSSHLESS-I-KSAQIL 192 (195)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCccc-c-chhhee
Confidence 9999999999999999987654 58999999999973 3 446644
|
|
| >cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.1e-28 Score=229.95 Aligned_cols=146 Identities=32% Similarity=0.419 Sum_probs=123.0
Q ss_pred EEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCc
Q 006897 57 VTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCH 136 (627)
Q Consensus 57 l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~ 136 (627)
|+++|++++|+. ++.+|+|+||++++||+++|+||||||||||+++|+|+++|++ |+|.++|.
T Consensus 1 i~~~~~~~~~~~--------------~~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~~~ 63 (166)
T cd03223 1 IELENLSLATPD--------------GRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGS---GRIGMPEG 63 (166)
T ss_pred CEEEEEEEEcCC--------------CCeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCC---ceEEECCC
Confidence 468999999931 2359999999999999999999999999999999999998864 99998763
Q ss_pred cCCChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccCCcCCccccC------
Q 006897 137 QIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAGSFVGDEENR------ 210 (627)
Q Consensus 137 ~~~~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~gGe~qr------ 210 (627)
+.++|++|++.++ ..|++||+.+. ....++|||+||
T Consensus 64 ---------~~i~~~~q~~~~~-~~tv~~nl~~~----------------------------~~~~LS~G~~~rv~lara 105 (166)
T cd03223 64 ---------EDLLFLPQRPYLP-LGTLREQLIYP----------------------------WDDVLSGGEQQRLAFARL 105 (166)
T ss_pred ---------ceEEEECCCCccc-cccHHHHhhcc----------------------------CCCCCCHHHHHHHHHHHH
Confidence 5699999998766 56999999753 124455666665
Q ss_pred ------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCe
Q 006897 211 ------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGS 263 (627)
Q Consensus 211 ------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~ 263 (627)
||+|||+.++..+.+.|+++ ++|+|++||+++ ..+.||++++|++|.
T Consensus 106 l~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsh~~~--~~~~~d~i~~l~~~~ 164 (166)
T cd03223 106 LLHKPKFVFLDEATSALDEESEDRLYQLLKEL----GITVISVGHRPS--LWKFHDRVLDLDGEG 164 (166)
T ss_pred HHcCCCEEEEECCccccCHHHHHHHHHHHHHh----CCEEEEEeCChh--HHhhCCEEEEEcCCC
Confidence 99999999999999999875 579999999986 357999999998753
|
The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt |
| >KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.9e-28 Score=282.78 Aligned_cols=204 Identities=23% Similarity=0.378 Sum_probs=181.1
Q ss_pred ceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEEC
Q 006897 55 CKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVN 134 (627)
Q Consensus 55 ~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~ 134 (627)
..+.++|+++.|+.. +.+++++|+.|++||+.|++|+|||||||++|+|+|..+|++ |++.++
T Consensus 563 ~~~~~~~L~k~y~~~--------------~~Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~---G~a~i~ 625 (885)
T KOG0059|consen 563 SALVLNNLSKVYGGK--------------DGAVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTS---GEALIK 625 (885)
T ss_pred ceEEEcceeeeecch--------------hhhhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccCCc---ceEEEe
Confidence 468899999999522 118999999999999999999999999999999999999974 999999
Q ss_pred CccCCC---hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccCCc----CCcc
Q 006897 135 CHQIKK---PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAGSF----VGDE 207 (627)
Q Consensus 135 g~~~~~---~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~----~gGe 207 (627)
|+++.. ..+.++.+||+||++.+++.+|.+|++.+.++++ +.++.+.++.++.+++.+||.+.+++. +||+
T Consensus 626 g~~i~~~~~~~~~~~~iGyCPQ~d~l~~~lT~rEhL~~~arlr--G~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~ 703 (885)
T KOG0059|consen 626 GHDITVSTDFQQVRKQLGYCPQFDALWEELTGREHLEFYARLR--GLPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGN 703 (885)
T ss_pred cCccccccchhhhhhhcccCCchhhhhhhccHHHHHHHHHHHc--CCChhHHHHHHHHHHHHcCChhhhccchhhCCCcc
Confidence 998743 2347899999999999999999999999998765 567778888899999999998877654 4999
Q ss_pred ccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeCC
Q 006897 208 ENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGS 269 (627)
Q Consensus 208 ~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~ 269 (627)
|+| |++|+||.+++.++++++++.+ +|+.||++||.++ |.+.+|||+.+|.+|++...|+
T Consensus 704 kRkLs~aialig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k-~g~aiiLTSHsMe-E~EaLCtR~aImv~G~l~ciGs 781 (885)
T KOG0059|consen 704 KRRLSFAIALIGDPSVILLDEPSTGLDPKARRHLWDIIARLRK-NGKAIILTSHSME-EAEALCTRTAIMVIGQLRCIGS 781 (885)
T ss_pred hhhHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEcCCHH-HHHHHhhhhheeecCeeEEecC
Confidence 988 9999999999999999999976 4669999999999 6999999999999999999999
Q ss_pred HHHHHHHHHh
Q 006897 270 LELLEETINN 279 (627)
Q Consensus 270 ~~~~~~~~~~ 279 (627)
++++...+..
T Consensus 782 ~q~LKsrfG~ 791 (885)
T KOG0059|consen 782 PQELKSRYGS 791 (885)
T ss_pred hHHHHhhcCC
Confidence 9999877643
|
|
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.9e-27 Score=267.19 Aligned_cols=186 Identities=22% Similarity=0.306 Sum_probs=150.9
Q ss_pred cceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEE
Q 006897 54 TCKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITV 133 (627)
Q Consensus 54 ~~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i 133 (627)
..+|+++||++.|+ ++.+|+||||+|++||+++|+||||||||||+++|+|+++|++ |+|.+
T Consensus 322 ~~~l~~~~l~~~~~---------------~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~---G~i~~ 383 (556)
T PRK11819 322 DKVIEAENLSKSFG---------------DRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDS---GTIKI 383 (556)
T ss_pred CeEEEEEeEEEEEC---------------CeeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---eEEEE
Confidence 34799999999993 3459999999999999999999999999999999999999864 99998
Q ss_pred CCccCCChhhhcccEEEEccCC-CCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCcc-c----cCCcCCcc
Q 006897 134 NCHQIKKPAQLRKICGFVAQED-NLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTH-V----AGSFVGDE 207 (627)
Q Consensus 134 ~g~~~~~~~~~r~~ig~v~Q~~-~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~----~~~~~gGe 207 (627)
++ + ..+||++|+. .+++.+||.||+.++.... +.... ..++.++++.+|+.+ . ...++|||
T Consensus 384 ~~-~--------~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~--~~~~~--~~~~~~~l~~~~l~~~~~~~~~~~LSgG~ 450 (556)
T PRK11819 384 GE-T--------VKLAYVDQSRDALDPNKTVWEEISGGLDII--KVGNR--EIPSRAYVGRFNFKGGDQQKKVGVLSGGE 450 (556)
T ss_pred CC-c--------eEEEEEeCchhhcCCCCCHHHHHHhhcccc--ccccc--HHHHHHHHHhCCCChhHhcCchhhCCHHH
Confidence 43 2 1499999996 6788899999999864221 11111 223557899999953 3 34567999
Q ss_pred ccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecC-CeEE-ee
Q 006897 208 ENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSR-GSVV-HY 267 (627)
Q Consensus 208 ~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~-G~iv-~~ 267 (627)
+|| ||+|||+.++..+.+.|+++ .| |||++|||++ ++.++||++++|++ |++. +.
T Consensus 451 ~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~---~~-tvi~vtHd~~-~~~~~~d~i~~l~~~g~~~~~~ 525 (556)
T PRK11819 451 RNRLHLAKTLKQGGNVLLLDEPTNDLDVETLRALEEALLEF---PG-CAVVISHDRW-FLDRIATHILAFEGDSQVEWFE 525 (556)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC---CC-eEEEEECCHH-HHHHhCCEEEEEECCCeEEEec
Confidence 999 99999999999999999986 24 8999999998 48899999999986 7876 57
Q ss_pred CCHHHHHH
Q 006897 268 GSLELLEE 275 (627)
Q Consensus 268 G~~~~~~~ 275 (627)
|+.++..+
T Consensus 526 g~~~~~~~ 533 (556)
T PRK11819 526 GNFQEYEE 533 (556)
T ss_pred CCHHHHHH
Confidence 77765533
|
|
| >cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.5e-27 Score=240.26 Aligned_cols=169 Identities=17% Similarity=0.249 Sum_probs=136.6
Q ss_pred eeeceEEEEe-----CCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCccCCChhhhcccEEEEccCCCCCCC
Q 006897 86 ILKSVSFEAR-----DSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKKPAQLRKICGFVAQEDNLLPL 160 (627)
Q Consensus 86 iL~~vsl~i~-----~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~~~~~~~~r~~ig~v~Q~~~l~~~ 160 (627)
.++|++++++ +||+++|+||||||||||+++|+|+++|++ |+|.++|+ .++|++|+...++.
T Consensus 9 ~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~---G~i~~~g~----------~i~~~~q~~~~~~~ 75 (246)
T cd03237 9 TLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDE---GDIEIELD----------TVSYKPQYIKADYE 75 (246)
T ss_pred ccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCCC---CeEEECCc----------eEEEecccccCCCC
Confidence 6777888776 799999999999999999999999999864 99999874 48999999877777
Q ss_pred CCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccC----CcCCccccC------------------CCCCCCHH
Q 006897 161 LTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAG----SFVGDEENR------------------GISGLDST 218 (627)
Q Consensus 161 lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~----~~~gGe~qr------------------PtsgLD~~ 218 (627)
+||+|++.+..... . ......+++++.+||++..+ .++|||+|| ||++||+.
T Consensus 76 ~tv~e~l~~~~~~~--~----~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~ 149 (246)
T cd03237 76 GTVRDLLSSITKDF--Y----THPYFKTEIAKPLQIEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVE 149 (246)
T ss_pred CCHHHHHHHHhhhc--c----ccHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHH
Confidence 89999997653211 0 11234678899999976544 466999998 99999999
Q ss_pred HHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEE--eeCCHHHHH
Q 006897 219 SALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVV--HYGSLELLE 274 (627)
Q Consensus 219 ~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv--~~G~~~~~~ 274 (627)
++..+.+.|++++++.|+|||++|||++ ++..+||++++|+++..+ ..++++++.
T Consensus 150 ~~~~l~~~l~~~~~~~~~tiiivsHd~~-~~~~~~d~i~~l~~~~~~~~~~~~~~~~~ 206 (246)
T cd03237 150 QRLMASKVIRRFAENNEKTAFVVEHDII-MIDYLADRLIVFEGEPSVNGVANPPQSLR 206 (246)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEcCCCeeEEEeCCchHHH
Confidence 9999999999998766899999999998 478899999999765433 345555443
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.3e-27 Score=232.78 Aligned_cols=197 Identities=24% Similarity=0.346 Sum_probs=163.9
Q ss_pred cceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEE
Q 006897 54 TCKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITV 133 (627)
Q Consensus 54 ~~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i 133 (627)
...|+++|++.+| ++++||+|||++|++||-.+|+|||||||||||++++|..+|.+ |.+.+
T Consensus 29 ~~li~l~~v~v~r---------------~gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pss---g~~~~ 90 (257)
T COG1119 29 EPLIELKNVSVRR---------------NGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSS---GDVTL 90 (257)
T ss_pred cceEEecceEEEE---------------CCEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCC---Cceee
Confidence 4579999999999 35679999999999999999999999999999999999999863 99999
Q ss_pred CCccCCC---hhhhcccEEEEccC--CCCCCCCCHHHHHHHHHH--hcCCC-CCHHHHHHHHHHHHHHcCCccccCCcC-
Q 006897 134 NCHQIKK---PAQLRKICGFVAQE--DNLLPLLTVKETLMFSAN--FRLKG-MSHKEKEDRVESLMDELGLTHVAGSFV- 204 (627)
Q Consensus 134 ~g~~~~~---~~~~r~~ig~v~Q~--~~l~~~lTV~e~l~~~~~--~~~~~-~~~~~~~~~v~~~l~~lgL~~~~~~~~- 204 (627)
.|+..-+ ..++|++||+|.-. ..+.+..+|+|-+.-+.. ..... ...++..+++..+++.+|+.+.+++..
T Consensus 91 ~G~~~G~~~~~~elrk~IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~~ 170 (257)
T COG1119 91 LGRRFGKGETIFELRKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFG 170 (257)
T ss_pred eeeeccCCcchHHHHHHhCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCchh
Confidence 9987622 26789999999754 344556789888865432 11111 234567788999999999999887664
Q ss_pred ---CccccC------------------CCCCCCHHHHHHHHHHHHHHHHc-CCCEEEEEccCccHHHHHHhhhheeecCC
Q 006897 205 ---GDEENR------------------GISGLDSTSALQVIELLASMAKA-KQRTVVLSIHQPSYRILQYISKFLILSRG 262 (627)
Q Consensus 205 ---gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~-~g~Tii~~tH~~~~~i~~~~D~i~vL~~G 262 (627)
-||||| |++|||...+..+++.|.+++.. .+.++|+|||+.+ |+...+++++.+++|
T Consensus 171 ~LS~Ge~rrvLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~e-Ei~~~~th~lll~~g 249 (257)
T COG1119 171 SLSQGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAE-EIPPCFTHRLLLKEG 249 (257)
T ss_pred hcCHhHHHHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchh-hcccccceEEEeeCC
Confidence 688887 99999999999999999999753 2679999999998 699999999999999
Q ss_pred eEEeeCC
Q 006897 263 SVVHYGS 269 (627)
Q Consensus 263 ~iv~~G~ 269 (627)
+++++|.
T Consensus 250 ~v~~~g~ 256 (257)
T COG1119 250 EVVAQGK 256 (257)
T ss_pred ceeeccc
Confidence 9999874
|
|
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.5e-27 Score=266.30 Aligned_cols=177 Identities=17% Similarity=0.225 Sum_probs=149.9
Q ss_pred cceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEE
Q 006897 54 TCKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITV 133 (627)
Q Consensus 54 ~~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i 133 (627)
..+++++|+++.|+ + ..|+++||++++||+++|+||||||||||+|+|+|+++|++ |+|.+
T Consensus 338 ~~~l~~~~ls~~~~---------------~-~~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~---G~I~~ 398 (590)
T PRK13409 338 ETLVEYPDLTKKLG---------------D-FSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDE---GEVDP 398 (590)
T ss_pred ceEEEEcceEEEEC---------------C-EEEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCc---eEEEE
Confidence 45799999999993 1 24999999999999999999999999999999999999864 99987
Q ss_pred CCccCCChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccC----CcCCcccc
Q 006897 134 NCHQIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAG----SFVGDEEN 209 (627)
Q Consensus 134 ~g~~~~~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~----~~~gGe~q 209 (627)
+ ..+||++|+..+++.+||+||+.+.... .. ....++++++.+||.+..+ +++|||+|
T Consensus 399 ~-----------~~i~y~~Q~~~~~~~~tv~e~l~~~~~~----~~---~~~~~~~~L~~l~l~~~~~~~~~~LSGGe~Q 460 (590)
T PRK13409 399 E-----------LKISYKPQYIKPDYDGTVEDLLRSITDD----LG---SSYYKSEIIKPLQLERLLDKNVKDLSGGELQ 460 (590)
T ss_pred e-----------eeEEEecccccCCCCCcHHHHHHHHhhh----cC---hHHHHHHHHHHCCCHHHHhCCcccCCHHHHH
Confidence 5 1489999998888889999999875321 11 1235688999999976554 55699999
Q ss_pred C------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeCC
Q 006897 210 R------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGS 269 (627)
Q Consensus 210 r------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~ 269 (627)
| ||+|||+.++..+.++|++++++.|+|||++|||++ .+..+|||+++|++ ++...|.
T Consensus 461 RvaiAraL~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~-~~~~~aDrvivl~~-~~~~~g~ 536 (590)
T PRK13409 461 RVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIY-MIDYISDRLMVFEG-EPGKHGH 536 (590)
T ss_pred HHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEcC-cceeeee
Confidence 9 999999999999999999998767899999999998 48889999999964 7777665
|
|
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.6e-27 Score=264.76 Aligned_cols=185 Identities=23% Similarity=0.309 Sum_probs=149.9
Q ss_pred cceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEE
Q 006897 54 TCKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITV 133 (627)
Q Consensus 54 ~~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i 133 (627)
..+|+++|++++|. ++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++ |+|.+
T Consensus 320 ~~~l~~~~l~~~~~---------------~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~---G~i~~ 381 (552)
T TIGR03719 320 DKVIEAENLSKGFG---------------DKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDS---GTIKI 381 (552)
T ss_pred CeEEEEeeEEEEEC---------------CeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCC---eEEEE
Confidence 34799999999993 2459999999999999999999999999999999999998864 99998
Q ss_pred CCccCCChhhhcccEEEEccCC-CCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCcc-cc----CCcCCcc
Q 006897 134 NCHQIKKPAQLRKICGFVAQED-NLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTH-VA----GSFVGDE 207 (627)
Q Consensus 134 ~g~~~~~~~~~r~~ig~v~Q~~-~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~----~~~~gGe 207 (627)
++ + ..+||++|++ .+++.+||.||+.++.... +.... +.++.++++.+|+.+ .. .+++|||
T Consensus 382 ~~-~--------~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~--~~~~~--~~~~~~~l~~~~l~~~~~~~~~~~LSgGe 448 (552)
T TIGR03719 382 GE-T--------VKLAYVDQSRDALDPNKTVWEEISGGLDII--QLGKR--EVPSRAYVGRFNFKGSDQQKKVGQLSGGE 448 (552)
T ss_pred CC-c--------eEEEEEeCCccccCCCCcHHHHHHhhcccc--ccCcc--hHHHHHHHHhCCCChhHhcCchhhCCHHH
Confidence 43 2 1599999996 4788899999999864221 11111 234567899999963 33 4567999
Q ss_pred ccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecC-CeEE-ee
Q 006897 208 ENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSR-GSVV-HY 267 (627)
Q Consensus 208 ~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~-G~iv-~~ 267 (627)
+|| ||+|||+.++..+.+.|+++. + |||++|||++ .+.++||++++|++ |++. +.
T Consensus 449 ~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~---~-~viivsHd~~-~~~~~~d~i~~l~~~~~~~~~~ 523 (552)
T TIGR03719 449 RNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLEFA---G-CAVVISHDRW-FLDRIATHILAFEGDSHVEWFE 523 (552)
T ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHCC---C-eEEEEeCCHH-HHHHhCCEEEEEECCCeEEEeC
Confidence 999 999999999999999999872 4 8999999998 48889999999986 5776 56
Q ss_pred CCHHHHH
Q 006897 268 GSLELLE 274 (627)
Q Consensus 268 G~~~~~~ 274 (627)
|+.++..
T Consensus 524 g~~~~~~ 530 (552)
T TIGR03719 524 GNYSEYE 530 (552)
T ss_pred CCHHHHH
Confidence 7765543
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.2e-27 Score=233.78 Aligned_cols=171 Identities=18% Similarity=0.254 Sum_probs=135.7
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEE-ECCccCCChhhhcccEEEEccCCCCCCCCCHH
Q 006897 86 ILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSIT-VNCHQIKKPAQLRKICGFVAQEDNLLPLLTVK 164 (627)
Q Consensus 86 iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~-i~g~~~~~~~~~r~~ig~v~Q~~~l~~~lTV~ 164 (627)
+|+||||+|++||+++|+||||||||||+|+|+|+++|++ |+|. ++|..+ .+.|++.+++.+|++
T Consensus 2 vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~s---G~i~~~~~~~~-----------~~~~~~~l~~~ltv~ 67 (213)
T PRK15177 2 VLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDE---GDFIGLRGDAL-----------PLGANSFILPGLTGE 67 (213)
T ss_pred eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCC---CCEEEecCcee-----------ccccccccCCcCcHH
Confidence 7999999999999999999999999999999999998864 9996 666431 123456788999999
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccC----CcCCccccC------------------CCCCCCHHHHHH
Q 006897 165 ETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAG----SFVGDEENR------------------GISGLDSTSALQ 222 (627)
Q Consensus 165 e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~----~~~gGe~qr------------------PtsgLD~~~~~~ 222 (627)
||+.+..... +.+.++.. +.+.+.++|++..+ .++|||+|| |++++|+.++..
T Consensus 68 enl~~~~~~~--~~~~~~~~---~~~~~~~~l~~~~~~~~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~~~~~ 142 (213)
T PRK15177 68 ENARMMASLY--GLDGDEFS---HFCYQLTQLEQCYTDRVSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNATQLR 142 (213)
T ss_pred HHHHHHHHHc--CCCHHHHH---HHHHHHhChhHHhhchHhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHH
Confidence 9999876432 22333222 23345566665443 456999998 999999999999
Q ss_pred HHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeCCHHHHHHHHH
Q 006897 223 VIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGSLELLEETIN 278 (627)
Q Consensus 223 i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~~~~~ 278 (627)
+.+.+.+..+ ++|+|++||+++ ++.++||++++|++|++++.|+.+++.+.+.
T Consensus 143 ~~~~l~~~~~--~~~ii~vsH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~ 195 (213)
T PRK15177 143 MQAALACQLQ--QKGLIVLTHNPR-LIKEHCHAFGVLLHGKITMCEDLAQATALFE 195 (213)
T ss_pred HHHHHHHHhh--CCcEEEEECCHH-HHHHhcCeeEEEECCeEEEeCCHHHHHHHHH
Confidence 9998866543 468999999998 4788999999999999999999998876654
|
|
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.3e-26 Score=265.05 Aligned_cols=182 Identities=19% Similarity=0.274 Sum_probs=150.2
Q ss_pred cceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEE
Q 006897 54 TCKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITV 133 (627)
Q Consensus 54 ~~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i 133 (627)
..+|+++||++.|+ ++.+|+|+||+|++||++||+||||||||||||+|+|+++|++ |+|.+
T Consensus 310 ~~~l~~~~l~~~y~---------------~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~---G~i~~ 371 (638)
T PRK10636 310 NPLLKMEKVSAGYG---------------DRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVS---GEIGL 371 (638)
T ss_pred CceEEEEeeEEEeC---------------CeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---CeEEE
Confidence 45799999999993 3469999999999999999999999999999999999998864 99998
Q ss_pred CCccCCChhhhcccEEEEccCC--CCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCcc-cc----CCcCCc
Q 006897 134 NCHQIKKPAQLRKICGFVAQED--NLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTH-VA----GSFVGD 206 (627)
Q Consensus 134 ~g~~~~~~~~~r~~ig~v~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~----~~~~gG 206 (627)
++. ..+||++|+. .+.+..|+.+++.-. . .....+++.++|+.+++.. .. ..++||
T Consensus 372 ~~~---------~~igy~~Q~~~~~l~~~~~~~~~~~~~---~-----~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgG 434 (638)
T PRK10636 372 AKG---------IKLGYFAQHQLEFLRADESPLQHLARL---A-----PQELEQKLRDYLGGFGFQGDKVTEETRRFSGG 434 (638)
T ss_pred CCC---------EEEEEecCcchhhCCccchHHHHHHHh---C-----chhhHHHHHHHHHHcCCChhHhcCchhhCCHH
Confidence 631 2599999974 355667888876421 1 1223467889999999953 33 456799
Q ss_pred cccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEE-ee
Q 006897 207 EENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVV-HY 267 (627)
Q Consensus 207 e~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv-~~ 267 (627)
|+|| ||+|||+.++..+.+.|+++ .| |||+||||+. .+.++||++++|++|+++ +.
T Consensus 435 ekqRl~La~~l~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~---~g-tvi~vSHd~~-~~~~~~d~i~~l~~G~i~~~~ 509 (638)
T PRK10636 435 EKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDF---EG-ALVVVSHDRH-LLRSTTDDLYLVHDGKVEPFD 509 (638)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc---CC-eEEEEeCCHH-HHHHhCCEEEEEECCEEEEcC
Confidence 9999 99999999999999999986 24 9999999998 488999999999999997 78
Q ss_pred CCHHHHHH
Q 006897 268 GSLELLEE 275 (627)
Q Consensus 268 G~~~~~~~ 275 (627)
|+.++..+
T Consensus 510 g~~~~~~~ 517 (638)
T PRK10636 510 GDLEDYQQ 517 (638)
T ss_pred CCHHHHHH
Confidence 99887643
|
|
| >cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.4e-27 Score=238.86 Aligned_cols=180 Identities=23% Similarity=0.330 Sum_probs=143.6
Q ss_pred EeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEE-------
Q 006897 60 RNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSIT------- 132 (627)
Q Consensus 60 ~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~------- 132 (627)
.||+++|+. .+.+|+|+| .+++||+++|+||||||||||||+|+|+++|+. |+|.
T Consensus 4 ~~~~~~y~~--------------~~~~l~~i~-~i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~---G~I~~~~~~~~ 65 (255)
T cd03236 4 DEPVHRYGP--------------NSFKLHRLP-VPREGQVLGLVGPNGIGKSTALKILAGKLKPNL---GKFDDPPDWDE 65 (255)
T ss_pred cCcceeecC--------------cchhhhcCC-CCCCCCEEEEECCCCCCHHHHHHHHhCCcCCCC---ceEeeccccch
Confidence 367888832 125899999 599999999999999999999999999999874 9996
Q ss_pred ----ECCccCCCh-hhhc---ccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccC---
Q 006897 133 ----VNCHQIKKP-AQLR---KICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAG--- 201 (627)
Q Consensus 133 ----i~g~~~~~~-~~~r---~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~--- 201 (627)
++|+++.+. ...+ ..++|++|+..+++. ++.+++.+.. ...+.++++.++++.+||++..+
T Consensus 66 ~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~i~~~l-------~~~~~~~~~~~~l~~~gl~~~~~~~~ 137 (255)
T cd03236 66 ILDEFRGSELQNYFTKLLEGDVKVIVKPQYVDLIPK-AVKGKVGELL-------KKKDERGKLDELVDQLELRHVLDRNI 137 (255)
T ss_pred hhhhccCchhhhhhHHhhhcccceeeecchhccCch-HHHHHHHHHh-------chhHHHHHHHHHHHHcCCchhhcCCh
Confidence 778775321 1222 247999999888874 8888887642 12334567899999999976554
Q ss_pred -CcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCC
Q 006897 202 -SFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRG 262 (627)
Q Consensus 202 -~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G 262 (627)
.++|||+|| ||++||+.++..+.+.|+++++ .|+|||++||+++ .+.++||++++|+ |
T Consensus 138 ~~LS~G~~qrv~laral~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~-~~~tIIiiSHd~~-~~~~~ad~i~~l~-~ 214 (255)
T cd03236 138 DQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAE-DDNYVLVVEHDLA-VLDYLSDYIHCLY-G 214 (255)
T ss_pred hhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEECCHH-HHHHhCCEEEEEC-C
Confidence 456999998 9999999999999999999976 4899999999998 4778999999995 6
Q ss_pred eEEeeC
Q 006897 263 SVVHYG 268 (627)
Q Consensus 263 ~iv~~G 268 (627)
++.+.|
T Consensus 215 ~~~~~~ 220 (255)
T cd03236 215 EPGAYG 220 (255)
T ss_pred CCCcce
Confidence 666544
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.5e-27 Score=211.82 Aligned_cols=173 Identities=23% Similarity=0.329 Sum_probs=147.6
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
++.++||+.+. .+...|-|+|++|.+||++.||||||||||||+..+.|.+.+.-.-.|++++|+
T Consensus 2 ~l~l~nvsl~l---------------~g~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~ 66 (213)
T COG4136 2 MLCLKNVSLRL---------------PGSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNE 66 (213)
T ss_pred ceeeeeeeecC---------------CCceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECC
Confidence 57899999765 245689999999999999999999999999999999999987633359999999
Q ss_pred ccCCChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccC----CcCCccccC-
Q 006897 136 HQIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAG----SFVGDEENR- 210 (627)
Q Consensus 136 ~~~~~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~----~~~gGe~qr- 210 (627)
+++......+|++|++|||+.+||.++|.+||.|+..... +.+.+++.++.+|++.||+...+ +++||||-|
T Consensus 67 ~~l~~lPa~qRq~GiLFQD~lLFphlsVg~Nl~fAlp~~~---KG~aRr~~a~aAL~~~gL~g~f~~dP~tlSGGQrARv 143 (213)
T COG4136 67 QRLDMLPAAQRQIGILFQDALLFPHLSVGQNLLFALPATL---KGNARRNAANAALERSGLDGAFHQDPATLSGGQRARV 143 (213)
T ss_pred eeccccchhhhheeeeecccccccccccccceEEecCccc---ccHHHHhhHHHHHHHhccchhhhcChhhcCcchHHHH
Confidence 9975555678899999999999999999999999754332 23456777899999999987654 566999976
Q ss_pred -----------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCcc
Q 006897 211 -----------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPS 246 (627)
Q Consensus 211 -----------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~ 246 (627)
|+|.||..-+.++.+.+-.-.++.|..+|++|||..
T Consensus 144 aL~R~Lla~Pk~lLLDEPFS~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~~ 196 (213)
T COG4136 144 ALLRALLAQPKALLLDEPFSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHDLQ 196 (213)
T ss_pred HHHHHHHhCcceeeeCCchhHHHHHHHHHHHHHHHHHHHhcCCCeEEEecccc
Confidence 999999999999999887777778999999999987
|
|
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=99.94 E-value=3e-26 Score=262.46 Aligned_cols=184 Identities=22% Similarity=0.336 Sum_probs=150.0
Q ss_pred cceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEE
Q 006897 54 TCKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITV 133 (627)
Q Consensus 54 ~~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i 133 (627)
..+|+++||+++|+ ++.+|+|+||+|++||++||+||||||||||||+|+|+++|+. |+|.+
T Consensus 317 ~~~l~~~~l~~~~~---------------~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~---G~i~~ 378 (635)
T PRK11147 317 KIVFEMENVNYQID---------------GKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADS---GRIHC 378 (635)
T ss_pred CceEEEeeeEEEEC---------------CeEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCC---cEEEE
Confidence 45799999999993 3469999999999999999999999999999999999998864 99988
Q ss_pred CCccCCChhhhcccEEEEccCC-CCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCc-cc----cCCcCCcc
Q 006897 134 NCHQIKKPAQLRKICGFVAQED-NLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLT-HV----AGSFVGDE 207 (627)
Q Consensus 134 ~g~~~~~~~~~r~~ig~v~Q~~-~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~----~~~~~gGe 207 (627)
|.+ -.+||++|+. .+++.+||.||+.++... . ... ....++.++++.+++. +. ...++|||
T Consensus 379 -~~~--------~~i~y~~q~~~~l~~~~tv~e~l~~~~~~-~-~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGe 445 (635)
T PRK11147 379 -GTK--------LEVAYFDQHRAELDPEKTVMDNLAEGKQE-V-MVN--GRPRHVLGYLQDFLFHPKRAMTPVKALSGGE 445 (635)
T ss_pred -CCC--------cEEEEEeCcccccCCCCCHHHHHHhhccc-c-ccc--chHHHHHHHHHhcCCCHHHHhChhhhCCHHH
Confidence 433 1499999985 588899999999875321 0 111 1234678899999985 33 34567999
Q ss_pred ccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeec-CCeEEe-e
Q 006897 208 ENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILS-RGSVVH-Y 267 (627)
Q Consensus 208 ~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~-~G~iv~-~ 267 (627)
||| ||+|||+.++..+.+.|+++ +.|||++|||.+ .+.++||++++|+ +|++.. .
T Consensus 446 kqRl~la~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vSHd~~-~~~~~~d~i~~l~~~g~i~~~~ 520 (635)
T PRK11147 446 RNRLLLARLFLKPSNLLILDEPTNDLDVETLELLEELLDSY----QGTVLLVSHDRQ-FVDNTVTECWIFEGNGKIGRYV 520 (635)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC----CCeEEEEECCHH-HHHHhcCEEEEEeCCCeEEEcc
Confidence 999 99999999999999999875 359999999998 4888999999997 899865 5
Q ss_pred CCHHHH
Q 006897 268 GSLELL 273 (627)
Q Consensus 268 G~~~~~ 273 (627)
|+.++.
T Consensus 521 g~y~~y 526 (635)
T PRK11147 521 GGYHDA 526 (635)
T ss_pred CCHHHH
Confidence 666654
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.4e-26 Score=283.99 Aligned_cols=181 Identities=23% Similarity=0.404 Sum_probs=147.4
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
.++++|++++|+.+ .++++|+|+||++++||.++|+||||||||||+++|.|.++|.+ |.+.
T Consensus 614 ~I~~~~vsF~y~~~------------~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~---G~i~--- 675 (1495)
T PLN03232 614 AISIKNGYFSWDSK------------TSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAE---TSSV--- 675 (1495)
T ss_pred cEEEEeeEEEcCCC------------CCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccC---CCEE---
Confidence 58999999999531 23468999999999999999999999999999999999999864 6542
Q ss_pred ccCCChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCcccc---------------
Q 006897 136 HQIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVA--------------- 200 (627)
Q Consensus 136 ~~~~~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~--------------- 200 (627)
.+++.|+||+|++.++.. |++|||.|+.. . .+++.+++++..+|++..
T Consensus 676 -------~~~~~Iayv~Q~p~Lf~g-TIreNI~fg~~-----~----~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G 738 (1495)
T PLN03232 676 -------VIRGSVAYVPQVSWIFNA-TVRENILFGSD-----F----ESERYWRAIDVTALQHDLDLLPGRDLTEIGERG 738 (1495)
T ss_pred -------EecCcEEEEcCccccccc-cHHHHhhcCCc-----c----CHHHHHHHHHHhCCHHHHHhCCCCCCceecCCC
Confidence 356789999999999976 99999998731 1 234566677766664321
Q ss_pred CCcCCccccC------------------CCCCCCHHHHHHHHHH-HHHHHHcCCCEEEEEccCccHHHHHHhhhheeecC
Q 006897 201 GSFVGDEENR------------------GISGLDSTSALQVIEL-LASMAKAKQRTVVLSIHQPSYRILQYISKFLILSR 261 (627)
Q Consensus 201 ~~~~gGe~qr------------------PtsgLD~~~~~~i~~~-L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~ 261 (627)
..++|||||| |||+||+.+++++++. ++... .|+|+|++||+++ ..+.||+|++|++
T Consensus 739 ~~LSGGQkQRIaLARAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~l--~~kT~IlvTH~~~--~l~~aD~Ii~L~~ 814 (1495)
T PLN03232 739 VNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDEL--KGKTRVLVTNQLH--FLPLMDRIILVSE 814 (1495)
T ss_pred cccCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhh--cCCEEEEEECChh--hHHhCCEEEEEeC
Confidence 2356999999 9999999999989765 55443 4799999999997 4678999999999
Q ss_pred CeEEeeCCHHHHHH
Q 006897 262 GSVVHYGSLELLEE 275 (627)
Q Consensus 262 G~iv~~G~~~~~~~ 275 (627)
|++++.|+.+++.+
T Consensus 815 G~i~~~Gt~~eL~~ 828 (1495)
T PLN03232 815 GMIKEEGTFAELSK 828 (1495)
T ss_pred CEEEEecCHHHHHh
Confidence 99999999988753
|
|
| >COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.94 E-value=9.4e-27 Score=240.36 Aligned_cols=191 Identities=26% Similarity=0.377 Sum_probs=156.9
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
.+.++|+++.|. ..+++|+++||++++|+.+|++||||+||||++++|...+.+++ |.|.++|
T Consensus 262 ~v~F~~V~F~y~--------------~~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~s---G~I~id~ 324 (497)
T COG5265 262 AVAFINVSFAYD--------------PRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNS---GSITIDG 324 (497)
T ss_pred eEEEEEEEeecc--------------ccchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcC---ceEEEcc
Confidence 589999999995 34679999999999999999999999999999999999998764 9999999
Q ss_pred ccCCC--hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccc--------------
Q 006897 136 HQIKK--PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHV-------------- 199 (627)
Q Consensus 136 ~~~~~--~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-------------- 199 (627)
+++.. ...+|+-||.||||..||.+ |+..|+.++. +..+.+| +..+.+...+.+.
T Consensus 325 qdir~vtq~slR~aIg~VPQDtvLFND-ti~yni~ygr----~~at~ee----v~aaa~~aqi~~fi~~lP~gy~t~Vge 395 (497)
T COG5265 325 QDIRDVTQQSLRRAIGIVPQDTVLFND-TIAYNIKYGR----PDATAEE----VGAAAEAAQIHDFIQSLPEGYDTGVGE 395 (497)
T ss_pred hhHHHhHHHHHHHHhCcCcccceehhh-hHHHHHhccC----ccccHHH----HHHHHHHhhhhHHHHhCchhhhcccch
Confidence 99854 46789999999999999976 9999999873 1122222 3333333332221
Q ss_pred -cCCcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeec
Q 006897 200 -AGSFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILS 260 (627)
Q Consensus 200 -~~~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~ 260 (627)
.-+++|||||| .||+||..+.++|...|++++ .|+|.+++.|+++. + --+|.|++|+
T Consensus 396 rglklSggekqrvaiar~ilk~p~il~~deatsaldt~te~~iq~~l~~~~--~~rttlviahrlst-i-~~adeiivl~ 471 (497)
T COG5265 396 RGLKLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVS--AGRTTLVIAHRLST-I-IDADEIIVLD 471 (497)
T ss_pred heeeccCchHHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHh--CCCeEEEEeehhhh-c-cCCceEEEee
Confidence 12345999999 589999999999999999997 48999999999984 4 4589999999
Q ss_pred CCeEEeeCCHHHHHHH
Q 006897 261 RGSVVHYGSLELLEET 276 (627)
Q Consensus 261 ~G~iv~~G~~~~~~~~ 276 (627)
+|+|++.|+.+++...
T Consensus 472 ~g~i~erg~h~~ll~~ 487 (497)
T COG5265 472 NGRIVERGTHEELLAA 487 (497)
T ss_pred CCEEEecCcHHHHHHc
Confidence 9999999999988653
|
|
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.5e-25 Score=257.62 Aligned_cols=185 Identities=19% Similarity=0.328 Sum_probs=146.9
Q ss_pred ceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEEC
Q 006897 55 CKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVN 134 (627)
Q Consensus 55 ~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~ 134 (627)
.+|+++||++.|++ .+.+|+|+||+|++||+++|+||||||||||||+|+|+++|++ |+|.++
T Consensus 507 ~~L~~~~ls~~y~~--------------~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~---G~I~~~ 569 (718)
T PLN03073 507 PIISFSDASFGYPG--------------GPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSS---GTVFRS 569 (718)
T ss_pred ceEEEEeeEEEeCC--------------CCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCC---ceEEEC
Confidence 47999999999931 2358999999999999999999999999999999999999864 999876
Q ss_pred CccCCChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCcc-c----cCCcCCcccc
Q 006897 135 CHQIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTH-V----AGSFVGDEEN 209 (627)
Q Consensus 135 g~~~~~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~----~~~~~gGe~q 209 (627)
+ +..+||++|+. .+.+++.++..+......+.. .++++.++|+.+|+.+ . ...++|||+|
T Consensus 570 ~---------~~~igyv~Q~~--~~~l~~~~~~~~~~~~~~~~~----~~~~i~~~L~~~gl~~~~~~~~~~~LSgGqkq 634 (718)
T PLN03073 570 A---------KVRMAVFSQHH--VDGLDLSSNPLLYMMRCFPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKS 634 (718)
T ss_pred C---------ceeEEEEeccc--cccCCcchhHHHHHHHhcCCC----CHHHHHHHHHHCCCChHHhcCCccccCHHHHH
Confidence 4 23599999985 244566666543221111111 2356888999999963 3 3456799999
Q ss_pred C------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEE-eeCCH
Q 006897 210 R------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVV-HYGSL 270 (627)
Q Consensus 210 r------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv-~~G~~ 270 (627)
| ||+|||+.++..+++.|++. .| |||++|||++. +..+||++++|++|+++ +.|+.
T Consensus 635 RvaLAraL~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~---~g-tvIivSHd~~~-i~~~~drv~~l~~G~i~~~~g~~ 709 (718)
T PLN03073 635 RVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQGLVLF---QG-GVLMVSHDEHL-ISGSVDELWVVSEGKVTPFHGTF 709 (718)
T ss_pred HHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc---CC-EEEEEECCHHH-HHHhCCEEEEEECCEEEEeCCCH
Confidence 9 99999999999998888764 24 99999999984 88899999999999998 78888
Q ss_pred HHHHHH
Q 006897 271 ELLEET 276 (627)
Q Consensus 271 ~~~~~~ 276 (627)
++..++
T Consensus 710 ~~~~~~ 715 (718)
T PLN03073 710 HDYKKT 715 (718)
T ss_pred HHHHHH
Confidence 766544
|
|
| >COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.9e-26 Score=210.64 Aligned_cols=196 Identities=26% Similarity=0.381 Sum_probs=152.3
Q ss_pred ceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEEC
Q 006897 55 CKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVN 134 (627)
Q Consensus 55 ~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~ 134 (627)
+.++++++|+.|.. ..-.+||||++.|||+++|+|+|||||||||++|++++.|+. |+|.+.
T Consensus 5 PLL~V~~lsk~Yg~---------------~~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~---G~v~Y~ 66 (258)
T COG4107 5 PLLSVSGLSKLYGP---------------GKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDA---GTVTYR 66 (258)
T ss_pred cceeehhhhhhhCC---------------CcCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCC---CeEEEE
Confidence 37899999999953 346899999999999999999999999999999999999975 999885
Q ss_pred CccC--CC-----hh----hhcccEEEEccCCC--CCCC----CCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCc
Q 006897 135 CHQI--KK-----PA----QLRKICGFVAQEDN--LLPL----LTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLT 197 (627)
Q Consensus 135 g~~~--~~-----~~----~~r~~ig~v~Q~~~--l~~~----lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~ 197 (627)
-++- .+ .. -+|..-|+|.|++. +-.. -.+.|-+.-.. .|. -..+++...++|+++.++
T Consensus 67 ~r~~~~~dl~~msEaeRR~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G-~RH----YG~iR~~a~~WL~~VEI~ 141 (258)
T COG4107 67 MRDGQPRDLYTMSEAERRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIG-ARH----YGNIRAEAQDWLEEVEID 141 (258)
T ss_pred cCCCCchhHhhhchHHHHHHhhhccceeecCccccceeeeccCCccchhHHhhh-hhh----hhhHHHHHHHHHHhcccC
Confidence 4321 11 11 13456799999963 3222 23444443211 111 134566788899998775
Q ss_pred -----cccCCcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhh
Q 006897 198 -----HVAGSFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYIS 254 (627)
Q Consensus 198 -----~~~~~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D 254 (627)
+...+.+||++|| ||.|||...+..++++++.+.++.|.+++++|||+.. +.-++|
T Consensus 142 ~~RiDD~PrtFSGGMqQRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl~V-arLla~ 220 (258)
T COG4107 142 LDRIDDLPRTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAV-ARLLAD 220 (258)
T ss_pred cccccCcccccchHHHHHHHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechhHH-HHHhhh
Confidence 3445667999988 9999999999999999999999999999999999984 556799
Q ss_pred hheeecCCeEEeeCCHHHHH
Q 006897 255 KFLILSRGSVVHYGSLELLE 274 (627)
Q Consensus 255 ~i~vL~~G~iv~~G~~~~~~ 274 (627)
|.++|++|++++.|-.+.+.
T Consensus 221 rlmvmk~g~vve~GLTDrvL 240 (258)
T COG4107 221 RLMVMKQGQVVESGLTDRVL 240 (258)
T ss_pred cceeecCCCEeccccccccc
Confidence 99999999999999776554
|
|
| >TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.9e-26 Score=262.11 Aligned_cols=173 Identities=20% Similarity=0.278 Sum_probs=140.6
Q ss_pred ceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEEC
Q 006897 55 CKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVN 134 (627)
Q Consensus 55 ~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~ 134 (627)
..|+++||++.|++ ++.+|+|+||++++||+++|+||||||||||+|+|+|+++|++ |+|.++
T Consensus 450 ~~i~~~nv~~~~~~--------------~~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~---G~i~~~ 512 (659)
T TIGR00954 450 NGIKFENIPLVTPN--------------GDVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPVYG---GRLTKP 512 (659)
T ss_pred CeEEEEeeEEECCC--------------CCeeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---CeEeec
Confidence 36999999998841 2359999999999999999999999999999999999998764 998875
Q ss_pred CccCCChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCcccc-------------C
Q 006897 135 CHQIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVA-------------G 201 (627)
Q Consensus 135 g~~~~~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~-------------~ 201 (627)
+ ++.++||+|++.+++. |++||+.++...... ..+...+++++++++.+|+++.. +
T Consensus 513 ~---------~~~i~~v~Q~~~l~~~-tv~eni~~~~~~~~~-~~~~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~ 581 (659)
T TIGR00954 513 A---------KGKLFYVPQRPYMTLG-TLRDQIIYPDSSEDM-KRRGLSDKDLEQILDNVQLTHILEREGGWSAVQDWMD 581 (659)
T ss_pred C---------CCcEEEECCCCCCCCc-CHHHHHhcCCChhhh-hccCCCHHHHHHHHHHcCCHHHHhhcCCccccccccc
Confidence 3 4579999999998887 999999875321100 00112245678899999987643 4
Q ss_pred CcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecC
Q 006897 202 SFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSR 261 (627)
Q Consensus 202 ~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~ 261 (627)
.++|||||| ||++||+.++..+.+.+++ .|+|+|++||+++ ..+.||++++|+.
T Consensus 582 ~LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~~l~~~l~~----~~~tvI~isH~~~--~~~~~d~il~l~~ 653 (659)
T TIGR00954 582 VLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCRE----FGITLFSVSHRKS--LWKYHEYLLYMDG 653 (659)
T ss_pred CCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHH----cCCEEEEEeCchH--HHHhCCEEEEEeC
Confidence 577999999 9999999999999988865 3789999999997 3588999999963
|
|
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.3e-26 Score=281.27 Aligned_cols=180 Identities=22% Similarity=0.402 Sum_probs=147.8
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
.|+++|++++|+.+ .++++|+|+|+++++||.++|+||||||||||+++|.|.++|.+ .|+|.+
T Consensus 614 ~I~~~nvsf~y~~~------------~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~--GG~I~l-- 677 (1622)
T PLN03130 614 AISIKNGYFSWDSK------------AERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRS--DASVVI-- 677 (1622)
T ss_pred ceEEEeeEEEccCC------------CCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCC--CceEEE--
Confidence 58999999999532 23468999999999999999999999999999999999998852 178863
Q ss_pred ccCCChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCcccc---------------
Q 006897 136 HQIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVA--------------- 200 (627)
Q Consensus 136 ~~~~~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~--------------- 200 (627)
++.|+||+|++.++.. ||+|||.|+.. ..+++.+++++..+|++..
T Consensus 678 ---------~~~Iayv~Q~p~Lfng-TIreNI~fg~~---------~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G 738 (1622)
T PLN03130 678 ---------RGTVAYVPQVSWIFNA-TVRDNILFGSP---------FDPERYERAIDVTALQHDLDLLPGGDLTEIGERG 738 (1622)
T ss_pred ---------cCeEEEEcCccccCCC-CHHHHHhCCCc---------ccHHHHHHHHHHhCcHHHHHhCCCcccccccCCC
Confidence 5579999999999976 99999998731 1245667777777764321
Q ss_pred CCcCCccccC------------------CCCCCCHHHHHHHHH-HHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecC
Q 006897 201 GSFVGDEENR------------------GISGLDSTSALQVIE-LLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSR 261 (627)
Q Consensus 201 ~~~~gGe~qr------------------PtsgLD~~~~~~i~~-~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~ 261 (627)
..++|||||| |||+||+.+.+++++ .++.+. .|+|+|++||+++ ..+.||+|++|++
T Consensus 739 ~~LSGGQKQRIaLARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l--~~kTvIlVTH~l~--~l~~aD~Ii~L~~ 814 (1622)
T PLN03130 739 VNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDEL--RGKTRVLVTNQLH--FLSQVDRIILVHE 814 (1622)
T ss_pred CCCCHHHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHhhHHh--cCCEEEEEECCHh--HHHhCCEEEEEeC
Confidence 2356999999 999999999998875 556553 4799999999996 4678999999999
Q ss_pred CeEEeeCCHHHHH
Q 006897 262 GSVVHYGSLELLE 274 (627)
Q Consensus 262 G~iv~~G~~~~~~ 274 (627)
|++++.|+.+++.
T Consensus 815 G~i~e~Gt~~eL~ 827 (1622)
T PLN03130 815 GMIKEEGTYEELS 827 (1622)
T ss_pred CEEEEeCCHHHHH
Confidence 9999999998875
|
|
| >cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth | Back alignment and domain information |
|---|
Probab=99.93 E-value=1e-25 Score=209.84 Aligned_cols=144 Identities=26% Similarity=0.321 Sum_probs=109.6
Q ss_pred EEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCc
Q 006897 57 VTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCH 136 (627)
Q Consensus 57 l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~ 136 (627)
++++|++++|. +..+|+|+||++++||+++|+||||||||||+++|+|+++|.. |+|.++|+
T Consensus 1 l~~~~l~~~~~---------------~~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~---G~i~~~~~ 62 (144)
T cd03221 1 IELENLSKTYG---------------GKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDE---GIVTWGST 62 (144)
T ss_pred CEEEEEEEEEC---------------CceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCc---eEEEECCe
Confidence 47899999993 2359999999999999999999999999999999999998864 99999873
Q ss_pred cCCChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccCCcCCccccCCCCCCC
Q 006897 137 QIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAGSFVGDEENRGISGLD 216 (627)
Q Consensus 137 ~~~~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~gGe~qrPtsgLD 216 (627)
+.++|++| + +..+ .+++.=+...+. + .+-++- ..|++|||
T Consensus 63 ---------~~i~~~~~-------l-----------------S~G~-~~rv~laral~~-~--p~illl---DEP~~~LD 102 (144)
T cd03221 63 ---------VKIGYFEQ-------L-----------------SGGE-KMRLALAKLLLE-N--PNLLLL---DEPTNHLD 102 (144)
T ss_pred ---------EEEEEEcc-------C-----------------CHHH-HHHHHHHHHHhc-C--CCEEEE---eCCccCCC
Confidence 46999999 1 1111 111111111110 0 001111 22999999
Q ss_pred HHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCe
Q 006897 217 STSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGS 263 (627)
Q Consensus 217 ~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~ 263 (627)
+.++..+.+.|+++ ++|+|++||+++ ++.++||++++|++|+
T Consensus 103 ~~~~~~l~~~l~~~----~~til~~th~~~-~~~~~~d~v~~l~~g~ 144 (144)
T cd03221 103 LESIEALEEALKEY----PGTVILVSHDRY-FLDQVATKIIELEDGK 144 (144)
T ss_pred HHHHHHHHHHHHHc----CCEEEEEECCHH-HHHHhCCEEEEEeCCC
Confidence 99999999999876 469999999998 5788999999999986
|
EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. |
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.5e-25 Score=254.55 Aligned_cols=185 Identities=21% Similarity=0.291 Sum_probs=142.7
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
+|+++||+++|+ ++.+|+||||+|++||++||+||||||||||||+|+|+++|++ |+|.++|
T Consensus 1 ~i~i~nls~~~g---------------~~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~---G~I~~~~ 62 (638)
T PRK10636 1 MIVFSSLQIRRG---------------VRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADG---GSYTFPG 62 (638)
T ss_pred CEEEEEEEEEeC---------------CceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---ceEEecC
Confidence 488999999993 3469999999999999999999999999999999999998864 9999987
Q ss_pred ccCCChhhhcccEEEEccCCCCCCCCCHHHHHHHHH-----------------------Hhc--CCCCCHHHHHHHHHHH
Q 006897 136 HQIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSA-----------------------NFR--LKGMSHKEKEDRVESL 190 (627)
Q Consensus 136 ~~~~~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~-----------------------~~~--~~~~~~~~~~~~v~~~ 190 (627)
.. .++|++|+...+. .|+.+.+.-.. .+. .......+.++++.++
T Consensus 63 ~~---------~i~~~~q~~~~~~-~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (638)
T PRK10636 63 NW---------QLAWVNQETPALP-QPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASL 132 (638)
T ss_pred CC---------EEEEEecCCCCCC-CCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHH
Confidence 42 3788888643332 46555443110 000 0000111235678999
Q ss_pred HHHcCCc-ccc----CCcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccH
Q 006897 191 MDELGLT-HVA----GSFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSY 247 (627)
Q Consensus 191 l~~lgL~-~~~----~~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~ 247 (627)
|+.+|+. +.. ..++|||+|| ||++||+.+...+.+.|+++ +.|||+||||+..
T Consensus 133 L~~lgl~~~~~~~~~~~LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~----~~tviivsHd~~~ 208 (638)
T PRK10636 133 LHGLGFSNEQLERPVSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSY----QGTLILISHDRDF 208 (638)
T ss_pred HHhCCCCchhhcCchhhcCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhC----CCeEEEEeCCHHH
Confidence 9999996 333 4567999999 99999999999999998764 4699999999984
Q ss_pred HHHHHhhhheeecCCeEE-eeCCHHHH
Q 006897 248 RILQYISKFLILSRGSVV-HYGSLELL 273 (627)
Q Consensus 248 ~i~~~~D~i~vL~~G~iv-~~G~~~~~ 273 (627)
+.++||++++|++|++. +.|+.+..
T Consensus 209 -l~~~~d~i~~L~~G~i~~~~g~~~~~ 234 (638)
T PRK10636 209 -LDPIVDKIIHIEQQSLFEYTGNYSSF 234 (638)
T ss_pred -HHHhcCEEEEEeCCEEEEecCCHHHH
Confidence 88999999999999996 56776543
|
|
| >cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.3e-25 Score=215.73 Aligned_cols=154 Identities=16% Similarity=0.191 Sum_probs=113.3
Q ss_pred EeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCccCC
Q 006897 60 RNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIK 139 (627)
Q Consensus 60 ~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~~~ 139 (627)
.||+++|+ ++.+++|+ +++++||+++|+||||||||||+|+|+|+++|++ |+|.++|++
T Consensus 4 ~~l~~~~~---------------~~~~l~~~-~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~---G~i~~~g~~-- 62 (177)
T cd03222 4 PDCVKRYG---------------VFFLLVEL-GVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNG---DNDEWDGIT-- 62 (177)
T ss_pred CCeEEEEC---------------CEEEEccC-cEECCCCEEEEECCCCChHHHHHHHHHcCCCCCC---cEEEECCEE--
Confidence 57888883 34688885 9999999999999999999999999999999864 999998853
Q ss_pred ChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccCCcCCccccCCCCCCCHHH
Q 006897 140 KPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAGSFVGDEENRGISGLDSTS 219 (627)
Q Consensus 140 ~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~gGe~qrPtsgLD~~~ 219 (627)
++|++|+.. ++ ..+ ++++.-+...+. + .+-++- ..||++||+.+
T Consensus 63 --------i~~~~q~~~----LS-----------------gGq-~qrv~laral~~-~--p~lllL---DEPts~LD~~~ 106 (177)
T cd03222 63 --------PVYKPQYID----LS-----------------GGE-LQRVAIAAALLR-N--ATFYLF---DEPSAYLDIEQ 106 (177)
T ss_pred --------EEEEcccCC----CC-----------------HHH-HHHHHHHHHHhc-C--CCEEEE---ECCcccCCHHH
Confidence 789999754 11 111 111111111110 0 011111 22999999999
Q ss_pred HHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEee--CCHH
Q 006897 220 ALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHY--GSLE 271 (627)
Q Consensus 220 ~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~--G~~~ 271 (627)
+..+.+.+++++++.+.|||++||+++ ++.++||++++|+++-.++. |.|.
T Consensus 107 ~~~l~~~l~~~~~~~~~tiiivsH~~~-~~~~~~d~i~~l~~~~~~~~~~~~~~ 159 (177)
T cd03222 107 RLNAARAIRRLSEEGKKTALVVEHDLA-VLDYLSDRIHVFEGEPGVYGIASQPK 159 (177)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEECCHH-HHHHhCCEEEEEcCCCccceeccCCc
Confidence 999999999997654489999999998 47889999999998765544 5544
|
RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.4e-25 Score=252.91 Aligned_cols=186 Identities=22% Similarity=0.307 Sum_probs=141.9
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
+|+++||+++|+ ++.+|+||||+|++||++||+||||||||||||+|+|+++|++ |+|.++|
T Consensus 3 ~l~i~~ls~~~~---------------~~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~---G~I~~~~ 64 (635)
T PRK11147 3 LISIHGAWLSFS---------------DAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDD---GRIIYEQ 64 (635)
T ss_pred EEEEeeEEEEeC---------------CceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCC---eEEEeCC
Confidence 699999999993 3469999999999999999999999999999999999998864 9999876
Q ss_pred ccCCChhhhcccEEEEccCCCCCCCCCHHHHHH------------------------------HHHHhc--CCCCCHHHH
Q 006897 136 HQIKKPAQLRKICGFVAQEDNLLPLLTVKETLM------------------------------FSANFR--LKGMSHKEK 183 (627)
Q Consensus 136 ~~~~~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~------------------------------~~~~~~--~~~~~~~~~ 183 (627)
.. .++|++|++......+|.+++. ....+. .......+.
T Consensus 65 ~~---------~~~~l~q~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 135 (635)
T PRK11147 65 DL---------IVARLQQDPPRNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQL 135 (635)
T ss_pred CC---------EEEEeccCCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccH
Confidence 32 2566776543222235555432 111000 000011123
Q ss_pred HHHHHHHHHHcCCcc--ccCCcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEcc
Q 006897 184 EDRVESLMDELGLTH--VAGSFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIH 243 (627)
Q Consensus 184 ~~~v~~~l~~lgL~~--~~~~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH 243 (627)
++++.++++.+|+.. ....++|||+|| ||++||+.++..+.+.|+++ +.|||+|||
T Consensus 136 ~~~~~~~l~~lgl~~~~~~~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~----~~tvlivsH 211 (635)
T PRK11147 136 ENRINEVLAQLGLDPDAALSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTF----QGSIIFISH 211 (635)
T ss_pred HHHHHHHHHhCCCCCCCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhC----CCEEEEEeC
Confidence 567899999999952 345677999999 99999999999999999876 249999999
Q ss_pred CccHHHHHHhhhheeecCCeEE-eeCCHHHH
Q 006897 244 QPSYRILQYISKFLILSRGSVV-HYGSLELL 273 (627)
Q Consensus 244 ~~~~~i~~~~D~i~vL~~G~iv-~~G~~~~~ 273 (627)
|+.. +.++||++++|++|+++ +.|+.++.
T Consensus 212 d~~~-l~~~~d~i~~L~~G~i~~~~g~~~~~ 241 (635)
T PRK11147 212 DRSF-IRNMATRIVDLDRGKLVSYPGNYDQY 241 (635)
T ss_pred CHHH-HHHhcCeEEEEECCEEEEecCCHHHH
Confidence 9984 88899999999999997 46876543
|
|
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.8e-25 Score=264.11 Aligned_cols=193 Identities=23% Similarity=0.308 Sum_probs=163.0
Q ss_pred cceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEE
Q 006897 54 TCKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITV 133 (627)
Q Consensus 54 ~~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i 133 (627)
...|+++|++.+|.++ ...||+||||+|+|||.+||+|..|||||||+++|-++..|.+ |+|.|
T Consensus 1136 ~G~I~f~~~~~RYrp~-------------lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~---G~I~I 1199 (1381)
T KOG0054|consen 1136 KGEIEFEDLSLRYRPN-------------LPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAE---GEILI 1199 (1381)
T ss_pred CCeEEEEEeEEEeCCC-------------CcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccC---CeEEE
Confidence 3479999999999643 2369999999999999999999999999999999999998854 99999
Q ss_pred CCccCCC--hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccCCcC-------
Q 006897 134 NCHQIKK--PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAGSFV------- 204 (627)
Q Consensus 134 ~g~~~~~--~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~------- 204 (627)
||.|+.+ ..++|++++.+||||.+|.+ |||.||.=. .+-.++++.++|+..+|.+...++.
T Consensus 1200 DgvdI~~igL~dLRsrlsIIPQdPvLFsG-TvR~NLDPf---------~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v 1269 (1381)
T KOG0054|consen 1200 DGVDISKIGLHDLRSRLSIIPQDPVLFSG-TVRFNLDPF---------DEYSDDEIWEALERCQLKDVVSSLPGGLDSEV 1269 (1381)
T ss_pred cCeecccccHHHHHhcCeeeCCCCceecC-ccccccCcc---------cccCHHHHHHHHHHhChHHHHhhCCcCCCcee
Confidence 9999854 47899999999999999998 999998521 1234567899999988875443222
Q ss_pred --------CccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhhee
Q 006897 205 --------GDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLI 258 (627)
Q Consensus 205 --------gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~v 258 (627)
-||||. .|+++|+.+-..|-+.||+-- .++|||.+.|+++. +.+ +|||+|
T Consensus 1270 ~egG~N~SvGQRQLlCLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~F--~dcTVltIAHRl~T-Vmd-~DrVlV 1345 (1381)
T KOG0054|consen 1270 SEGGENFSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREEF--KDCTVLTIAHRLNT-VMD-SDRVLV 1345 (1381)
T ss_pred cCCCccCChHHHHHHHHHHHHhccCCEEEEecccccCChHHHHHHHHHHHHHh--cCCeEEEEeeccch-hhh-cCeEEE
Confidence 356664 899999999999999999864 47999999999994 654 899999
Q ss_pred ecCCeEEeeCCHHHHHHH
Q 006897 259 LSRGSVVHYGSLELLEET 276 (627)
Q Consensus 259 L~~G~iv~~G~~~~~~~~ 276 (627)
|++|++++.|+|+++.+.
T Consensus 1346 ld~G~v~EfdsP~~Ll~~ 1363 (1381)
T KOG0054|consen 1346 LDAGRVVEFDSPAELLSD 1363 (1381)
T ss_pred eeCCeEeecCChHHHHhC
Confidence 999999999999988753
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.4e-25 Score=274.21 Aligned_cols=184 Identities=22% Similarity=0.382 Sum_probs=144.7
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
.++++|+++.|+. ..+++|+|+||++++||+++|+||||||||||+++|+|+++|.+ |+|.++|
T Consensus 636 ~i~~~~~~~~~~~-------------~~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~---G~i~~~g 699 (1522)
T TIGR00957 636 SITVHNATFTWAR-------------DLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVE---GHVHMKG 699 (1522)
T ss_pred cEEEEEeEEEcCC-------------CCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCC---cEEEECC
Confidence 5999999999942 12459999999999999999999999999999999999999864 9999876
Q ss_pred ccCCChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHH---HHHHcCC-----c----cccCCc
Q 006897 136 HQIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVES---LMDELGL-----T----HVAGSF 203 (627)
Q Consensus 136 ~~~~~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~---~l~~lgL-----~----~~~~~~ 203 (627)
.+|||+|++.+++ .||+||+.++.. .++++. +++.+ +.+.++. + +....+
T Consensus 700 -----------~i~yv~Q~~~l~~-~Ti~eNI~~g~~-----~~~~~~-~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~L 761 (1522)
T TIGR00957 700 -----------SVAYVPQQAWIQN-DSLRENILFGKA-----LNEKYY-QQVLEACALLPDLEILPSGDRTEIGEKGVNL 761 (1522)
T ss_pred -----------EEEEEcCCccccC-CcHHHHhhcCCc-----cCHHHH-HHHHHHhCCHHHHHhcCCCCCceecCCCCCC
Confidence 4899999998876 599999998632 122221 22211 1222222 1 223456
Q ss_pred CCccccC------------------CCCCCCHHHHHHHHHHHHHHH-HcCCCEEEEEccCccHHHHHHhhhheeecCCeE
Q 006897 204 VGDEENR------------------GISGLDSTSALQVIELLASMA-KAKQRTVVLSIHQPSYRILQYISKFLILSRGSV 264 (627)
Q Consensus 204 ~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~-~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~i 264 (627)
+|||||| |||+||+.+++.+++.+.+.. ...|+|+|++||+++. .+.||+|++|++|++
T Consensus 762 SGGQkqRiaLARAl~~~~~illLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~--l~~~D~ii~l~~G~i 839 (1522)
T TIGR00957 762 SGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISY--LPQVDVIIVMSGGKI 839 (1522)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChhh--hhhCCEEEEecCCeE
Confidence 7999999 999999999999999997531 1247899999999973 456999999999999
Q ss_pred EeeCCHHHHHH
Q 006897 265 VHYGSLELLEE 275 (627)
Q Consensus 265 v~~G~~~~~~~ 275 (627)
++.|+.+++.+
T Consensus 840 ~~~g~~~~l~~ 850 (1522)
T TIGR00957 840 SEMGSYQELLQ 850 (1522)
T ss_pred EeeCCHHHHHh
Confidence 99999988753
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=99.92 E-value=7.5e-25 Score=207.13 Aligned_cols=154 Identities=33% Similarity=0.521 Sum_probs=116.7
Q ss_pred EEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCccC
Q 006897 59 VRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQI 138 (627)
Q Consensus 59 ~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~~ 138 (627)
++|+++.|. ++.+++++|+++++||+++|+||||||||||+++|+|++++.. |+|+++|.++
T Consensus 2 ~~~~~~~~~---------------~~~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~---G~i~~~~~~~ 63 (157)
T cd00267 2 IENLSFRYG---------------GRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTS---GEILIDGKDI 63 (157)
T ss_pred eEEEEEEeC---------------CeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCc---cEEEECCEEc
Confidence 688999883 2359999999999999999999999999999999999998854 9999999875
Q ss_pred CC--hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccCCcCCccccCCCCCCC
Q 006897 139 KK--PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAGSFVGDEENRGISGLD 216 (627)
Q Consensus 139 ~~--~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~gGe~qrPtsgLD 216 (627)
.. ..+.++.++|++| ++- .+ ++++. +...+-.+ .+-.+- ..||+|||
T Consensus 64 ~~~~~~~~~~~i~~~~q-------lS~-----------------G~-~~r~~-l~~~l~~~--~~i~il---DEp~~~lD 112 (157)
T cd00267 64 AKLPLEELRRRIGYVPQ-------LSG-----------------GQ-RQRVA-LARALLLN--PDLLLL---DEPTSGLD 112 (157)
T ss_pred ccCCHHHHHhceEEEee-------CCH-----------------HH-HHHHH-HHHHHhcC--CCEEEE---eCCCcCCC
Confidence 32 3456678999999 111 11 11111 11111111 011111 23999999
Q ss_pred HHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCe
Q 006897 217 STSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGS 263 (627)
Q Consensus 217 ~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~ 263 (627)
+.++..+.+.++++.++ ++|++++||+++ ++..+||++++|++|+
T Consensus 113 ~~~~~~l~~~l~~~~~~-~~tii~~sh~~~-~~~~~~d~i~~l~~g~ 157 (157)
T cd00267 113 PASRERLLELLRELAEE-GRTVIIVTHDPE-LAELAADRVIVLKDGK 157 (157)
T ss_pred HHHHHHHHHHHHHHHHC-CCEEEEEeCCHH-HHHHhCCEEEEEeCcC
Confidence 99999999999998764 789999999998 4788899999999875
|
The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.4e-24 Score=199.82 Aligned_cols=187 Identities=22% Similarity=0.337 Sum_probs=158.9
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
+++++||+..- -|-.+|.++..||+.-+||||||||||||-.++|+++. +|+|.++|
T Consensus 3 l~qln~v~~~t-------------------RL~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~~~----sGsi~~~G 59 (248)
T COG4138 3 LMQLNDVAEST-------------------RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG----SGSIQFAG 59 (248)
T ss_pred eeeeccccccc-------------------cccccccccccceEEEEECCCCccHHHHHHHHhCCCCC----CceEEECC
Confidence 56788877543 37889999999999999999999999999999999865 29999999
Q ss_pred ccCCC--hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCcccc----CCcCCcccc
Q 006897 136 HQIKK--PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVA----GSFVGDEEN 209 (627)
Q Consensus 136 ~~~~~--~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~----~~~~gGe~q 209 (627)
+++.. ..++.++-+|+.|+..-...|.|...+.+. . +.++....++++...++|++.. ++++|||-|
T Consensus 60 ~~l~~~~~~eLArhRAYLsQqq~p~f~mpV~~YL~L~----q---P~~~~a~~i~~i~~~L~l~DKL~Rs~~qLSGGEWQ 132 (248)
T COG4138 60 QPLEAWSATELARHRAYLSQQQTPPFAMPVWHYLTLH----Q---PDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQ 132 (248)
T ss_pred cchhHHhHhHHHHHHHHHhhccCCcchhhhhhhhhhc----C---chHHHHHHHHHHHhhhcccchhhhhhhhcCcccce
Confidence 99632 356778889999986555568899988763 1 4466777899999999998765 456799998
Q ss_pred C-------------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeE
Q 006897 210 R-------------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSV 264 (627)
Q Consensus 210 r-------------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~i 264 (627)
| |.++||...+..+-.+|.++++ .|.+|||++||++- ..+.+|++.+|++|++
T Consensus 133 RVRLAav~LQv~Pd~NP~~~LLllDEP~~~LDvAQ~~aLdrll~~~c~-~G~~vims~HDLNh-TLrhA~~~wLL~rG~l 210 (248)
T COG4138 133 RVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQ-QGLAIVMSSHDLNH-TLRHAHRAWLLKRGKL 210 (248)
T ss_pred eeEEeEEEEEecCCCCccceeEEecCCCcchhHHHHHHHHHHHHHHHh-CCcEEEEeccchhh-HHHHHHHHHHHhcCeE
Confidence 8 8899999999999999999987 59999999999994 7899999999999999
Q ss_pred EeeCCHHHHH
Q 006897 265 VHYGSLELLE 274 (627)
Q Consensus 265 v~~G~~~~~~ 274 (627)
...|..+|+.
T Consensus 211 ~~~G~~~eVl 220 (248)
T COG4138 211 LASGRREEVL 220 (248)
T ss_pred Eeecchhhhc
Confidence 9999998874
|
|
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.1e-24 Score=266.38 Aligned_cols=167 Identities=24% Similarity=0.413 Sum_probs=133.6
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCccCCChhhhcccEEEEccCCCCCCCCCH
Q 006897 84 LHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKKPAQLRKICGFVAQEDNLLPLLTV 163 (627)
Q Consensus 84 ~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~~~~~~~~r~~ig~v~Q~~~l~~~lTV 163 (627)
+++|+|+||+|++||+++|+|||||||||||++|+|+++|.+ |+|.++| .++||+|++.+++. ||
T Consensus 439 ~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~~~---G~i~~~g-----------~iayv~Q~~~l~~~-Ti 503 (1490)
T TIGR01271 439 TPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSE---GKIKHSG-----------RISFSPQTSWIMPG-TI 503 (1490)
T ss_pred CcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---ceEEECC-----------EEEEEeCCCccCCc-cH
Confidence 468999999999999999999999999999999999999864 9999887 38999999999985 99
Q ss_pred HHHHHHHHHhcCCCCCHHHHHH-----HHHHHHHHcCC------ccccCCcCCccccC------------------CCCC
Q 006897 164 KETLMFSANFRLKGMSHKEKED-----RVESLMDELGL------THVAGSFVGDEENR------------------GISG 214 (627)
Q Consensus 164 ~e~l~~~~~~~~~~~~~~~~~~-----~v~~~l~~lgL------~~~~~~~~gGe~qr------------------Ptsg 214 (627)
+||+.|+... ..+..++ .+++.++.+.. .+....++|||||| |+++
T Consensus 504 ~eNI~~g~~~-----~~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDep~sa 578 (1490)
T TIGR01271 504 KDNIIFGLSY-----DEYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTH 578 (1490)
T ss_pred HHHHHhcccc-----chHHHHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCccc
Confidence 9999987421 1111111 11222332221 12234677999999 9999
Q ss_pred CCHHHHHHHHHH-HHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeCCHHHHH
Q 006897 215 LDSTSALQVIEL-LASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGSLELLE 274 (627)
Q Consensus 215 LD~~~~~~i~~~-L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~ 274 (627)
||+.++.++++. ++++. .|+|+|++||+++. + +.||++++|++|++++.|+.+++.
T Consensus 579 LD~~~~~~i~~~~l~~~~--~~~tvilvtH~~~~-~-~~ad~ii~l~~g~i~~~g~~~~l~ 635 (1490)
T TIGR01271 579 LDVVTEKEIFESCLCKLM--SNKTRILVTSKLEH-L-KKADKILLLHEGVCYFYGTFSELQ 635 (1490)
T ss_pred CCHHHHHHHHHHHHHHHh--cCCeEEEEeCChHH-H-HhCCEEEEEECCEEEEEcCHHHHH
Confidence 999999999985 66664 38999999999973 4 569999999999999999998875
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.91 E-value=2e-24 Score=202.00 Aligned_cols=168 Identities=23% Similarity=0.344 Sum_probs=140.5
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
+++.+||+..- ++..++.++||++.+||++-|.||||||||||||+|+|+.+|++ |+|.++|
T Consensus 2 ~L~a~~L~~~R---------------~e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~---G~v~~~~ 63 (209)
T COG4133 2 MLEAENLSCER---------------GERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDA---GEVYWQG 63 (209)
T ss_pred cchhhhhhhcc---------------CcceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCC---CeEEecC
Confidence 46677877654 34579999999999999999999999999999999999999975 9999999
Q ss_pred ccCCC-hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccCCc----CCccccC
Q 006897 136 HQIKK-PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAGSF----VGDEENR 210 (627)
Q Consensus 136 ~~~~~-~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~----~gGe~qr 210 (627)
+++.. .+..++.+-|+-.++.+=+.+||.|||.|....... ...+.+.++++.+||....|.. +.|||+|
T Consensus 64 ~~i~~~~~~~~~~l~yLGH~~giK~eLTa~ENL~F~~~~~~~-----~~~~~i~~Al~~vgL~g~~dlp~~~LSAGQqRR 138 (209)
T COG4133 64 EPIQNVRESYHQALLYLGHQPGIKTELTALENLHFWQRFHGS-----GNAATIWEALAQVGLAGLEDLPVGQLSAGQQRR 138 (209)
T ss_pred CCCccchhhHHHHHHHhhccccccchhhHHHHHHHHHHHhCC-----CchhhHHHHHHHcCcccccccchhhcchhHHHH
Confidence 88754 344677888888888888999999999998655421 2345689999999998777654 4788887
Q ss_pred ------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccH
Q 006897 211 ------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSY 247 (627)
Q Consensus 211 ------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~ 247 (627)
|+++||......+-.++..-+.+ |-.||.+||++-.
T Consensus 139 vAlArL~ls~~pLWiLDEP~taLDk~g~a~l~~l~~~H~~~-GGiVllttHq~l~ 192 (209)
T COG4133 139 VALARLWLSPAPLWILDEPFTALDKEGVALLTALMAAHAAQ-GGIVLLTTHQPLP 192 (209)
T ss_pred HHHHHHHcCCCCceeecCcccccCHHHHHHHHHHHHHHhcC-CCEEEEecCCccC
Confidence 99999999999999999988764 6689999999863
|
|
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.2e-24 Score=245.81 Aligned_cols=161 Identities=19% Similarity=0.282 Sum_probs=130.5
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEE-----------ECCccCCCh-hh---hcccE
Q 006897 84 LHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSIT-----------VNCHQIKKP-AQ---LRKIC 148 (627)
Q Consensus 84 ~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~-----------i~g~~~~~~-~~---~r~~i 148 (627)
..+|++++ .+++||++||+||||||||||+|+|+|+++|+. |+|. ++|+++.+. .. .+..+
T Consensus 87 ~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~---G~i~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~ 162 (590)
T PRK13409 87 GFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPNL---GDYEEEPSWDEVLKRFRGTELQNYFKKLYNGEIKV 162 (590)
T ss_pred ceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCCC---ccccCCCcHHHHHHHhCChHHHHHHHHHhccCcce
Confidence 35899999 999999999999999999999999999999974 9997 888875321 11 12346
Q ss_pred EEEccCCCCCCC---CCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccC----CcCCccccC-----------
Q 006897 149 GFVAQEDNLLPL---LTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAG----SFVGDEENR----------- 210 (627)
Q Consensus 149 g~v~Q~~~l~~~---lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~----~~~gGe~qr----------- 210 (627)
++.+|.....|. .||+|++... +.+++++++++.+||++..+ .++|||+||
T Consensus 163 ~~~~q~~~~~p~~~~~tv~e~l~~~-----------~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~ia~al~~~p 231 (590)
T PRK13409 163 VHKPQYVDLIPKVFKGKVRELLKKV-----------DERGKLDEVVERLGLENILDRDISELSGGELQRVAIAAALLRDA 231 (590)
T ss_pred eecccchhhhhhhhcchHHHHHHhh-----------hHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCC
Confidence 666665433332 3999998631 23457899999999976555 456999999
Q ss_pred -------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCC
Q 006897 211 -------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRG 262 (627)
Q Consensus 211 -------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G 262 (627)
||++||+.++..+.+.|+++++ |+|||++|||++ ++..+||++++|+++
T Consensus 232 ~lllLDEPts~LD~~~~~~l~~~i~~l~~--g~tvIivsHd~~-~l~~~~D~v~vl~~~ 287 (590)
T PRK13409 232 DFYFFDEPTSYLDIRQRLNVARLIRELAE--GKYVLVVEHDLA-VLDYLADNVHIAYGE 287 (590)
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHHC--CCEEEEEeCCHH-HHHHhCCEEEEEeCC
Confidence 9999999999999999999964 899999999998 588999999999763
|
|
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.5e-24 Score=251.62 Aligned_cols=181 Identities=28% Similarity=0.467 Sum_probs=150.7
Q ss_pred ceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEEC
Q 006897 55 CKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVN 134 (627)
Q Consensus 55 ~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~ 134 (627)
..++++|.+++.+.. +..+.|+||||+|++|+.+||+||-|||||+||.+|.|.++..+ |++.++
T Consensus 517 ~~i~i~~~sfsW~~~------------~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~s---G~v~v~ 581 (1381)
T KOG0054|consen 517 NAIEIKNGSFSWDSE------------SPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLS---GSVAVN 581 (1381)
T ss_pred ceEEEeeeeEecCCC------------CCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCccccc---ceEEEc
Confidence 368999999998532 23348999999999999999999999999999999999998754 999988
Q ss_pred CccCCChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccC-------------
Q 006897 135 CHQIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAG------------- 201 (627)
Q Consensus 135 g~~~~~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~------------- 201 (627)
|. ++||+|++.++.. ||+|||.|+..+ .+++-+++++...|++..+
T Consensus 582 gs-----------iaYv~Q~pWI~ng-TvreNILFG~~~---------d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGEr 640 (1381)
T KOG0054|consen 582 GS-----------VAYVPQQPWIQNG-TVRENILFGSPY---------DEERYDKVIKACALKKDLEILPFGDLTEIGER 640 (1381)
T ss_pred Ce-----------EEEeccccHhhCC-cHHHhhhcCccc---------cHHHHHHHHHHccCHhHHhhcCCCCcceecCC
Confidence 73 8999999999976 999999998422 2456667777777754221
Q ss_pred --CcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecC
Q 006897 202 --SFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSR 261 (627)
Q Consensus 202 --~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~ 261 (627)
.++|||||| |+|++|++..+++.+..-+..- .++|+|++||+++ ..+.||+|++|++
T Consensus 641 GinLSGGQKqRIsLARAVY~~adIYLLDDplSAVDahvg~~if~~ci~~~L-~~KT~ILVTHql~--~L~~ad~Iivl~~ 717 (1381)
T KOG0054|consen 641 GINLSGGQKQRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGLL-RGKTVILVTHQLQ--FLPHADQIIVLKD 717 (1381)
T ss_pred ccCCcHhHHHHHHHHHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHHhhh-cCCEEEEEeCchh--hhhhCCEEEEecC
Confidence 345999999 9999999999999865554332 4799999999986 5788999999999
Q ss_pred CeEEeeCCHHHHH
Q 006897 262 GSVVHYGSLELLE 274 (627)
Q Consensus 262 G~iv~~G~~~~~~ 274 (627)
|+|.+.|+.+|+.
T Consensus 718 G~I~~~Gty~el~ 730 (1381)
T KOG0054|consen 718 GKIVESGTYEELL 730 (1381)
T ss_pred CeEecccCHHHHH
Confidence 9999999999887
|
|
| >cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.6e-23 Score=201.05 Aligned_cols=135 Identities=21% Similarity=0.240 Sum_probs=105.7
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCccCCChhhhcccEEEEccCCCCCCCCC
Q 006897 83 PLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKKPAQLRKICGFVAQEDNLLPLLT 162 (627)
Q Consensus 83 ~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~~~~~~~~r~~ig~v~Q~~~l~~~lT 162 (627)
.+++|+|+||++++||+++|+||||||||||||+|.+ + .|++.++|.. . ...++.++|++|
T Consensus 7 ~~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il~----~---~G~v~~~~~~-~--~~~~~~~~~~~q--------- 67 (176)
T cd03238 7 NVHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLY----A---SGKARLISFL-P--KFSRNKLIFIDQ--------- 67 (176)
T ss_pred eeeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHhh----c---CCcEEECCcc-c--ccccccEEEEhH---------
Confidence 4579999999999999999999999999999999963 2 3999998763 1 112345888887
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCcc-----ccCCcCCccccC--------------------CCCCCCH
Q 006897 163 VKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTH-----VAGSFVGDEENR--------------------GISGLDS 217 (627)
Q Consensus 163 V~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-----~~~~~~gGe~qr--------------------PtsgLD~ 217 (627)
.++++.++|.. ....++|||+|| |+++||+
T Consensus 68 -------------------------~~~l~~~~L~~~~~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~ 122 (176)
T cd03238 68 -------------------------LQFLIDVGLGYLTLGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQ 122 (176)
T ss_pred -------------------------HHHHHHcCCCccccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCH
Confidence 12344455432 223455777766 9999999
Q ss_pred HHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeE
Q 006897 218 TSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSV 264 (627)
Q Consensus 218 ~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~i 264 (627)
.++..+.+.|+++++ .|+|||++||+++. + +.||++++|++|+.
T Consensus 123 ~~~~~l~~~l~~~~~-~g~tvIivSH~~~~-~-~~~d~i~~l~~g~~ 166 (176)
T cd03238 123 QDINQLLEVIKGLID-LGNTVILIEHNLDV-L-SSADWIIDFGPGSG 166 (176)
T ss_pred HHHHHHHHHHHHHHh-CCCEEEEEeCCHHH-H-HhCCEEEEECCCCC
Confidence 999999999999975 58999999999973 4 68999999976544
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.8e-23 Score=189.60 Aligned_cols=191 Identities=24% Similarity=0.374 Sum_probs=155.5
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
.|.++|++|+|.-.. +.+-..++++|+||+++.||++++-||||||||||||+|.|-+.|++ |+|.+.-
T Consensus 4 ~l~v~~~~KtFtlH~--------q~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~---G~I~v~H 72 (235)
T COG4778 4 PLNVSNVSKTFTLHQ--------QGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDE---GQILVRH 72 (235)
T ss_pred eeeeecchhheEeee--------cCCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCCC---ceEEEEe
Confidence 589999999996432 22234579999999999999999999999999999999999999975 9998853
Q ss_pred cc--C--C--Chh---hh-cccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCcccc-----
Q 006897 136 HQ--I--K--KPA---QL-RKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVA----- 200 (627)
Q Consensus 136 ~~--~--~--~~~---~~-r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~----- 200 (627)
.. + . .+. +. |+.||||.|.-...|..+..|-++-++.. .+.+.+..++++.++|.++++.+..
T Consensus 73 ~g~~vdl~~a~pr~vl~vRr~TiGyVSQFLRviPRV~aLdVvaePll~--~gv~~~~a~~~a~~Ll~rLnlperLW~LaP 150 (235)
T COG4778 73 EGEWVDLVTAEPREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLA--RGVPREVARAKAADLLTRLNLPERLWSLAP 150 (235)
T ss_pred CcchhhhhccChHHHHHHHHhhhHHHHHHHHhccCcchHHHHHhHHHH--cCCCHHHHHHHHHHHHHHcCCCHHHhcCCC
Confidence 32 1 1 121 23 45699999998888888888888876533 3567888899999999999997643
Q ss_pred CCcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecC
Q 006897 201 GSFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSR 261 (627)
Q Consensus 201 ~~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~ 261 (627)
.+.+|||+|| ||+.||..++..++++|++-+ ..|.++|=+-||-+. -...|||++-+..
T Consensus 151 aTFSGGEqQRVNIaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~K-a~GaAlvGIFHDeev-re~vadR~~~~~~ 227 (235)
T COG4778 151 ATFSGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREAK-ARGAALVGIFHDEEV-REAVADRLLDVSA 227 (235)
T ss_pred cccCCchheehhhhhhhhccCceEEecCCcccccccchHHHHHHHHHHH-hcCceEEEeeccHHH-HHHHhhheeeccc
Confidence 4566999999 999999999999999999874 579999999999763 4668999998764
|
|
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.3e-23 Score=241.68 Aligned_cols=198 Identities=20% Similarity=0.197 Sum_probs=138.7
Q ss_pred cceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEE
Q 006897 54 TCKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITV 133 (627)
Q Consensus 54 ~~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i 133 (627)
..+|+++|++++|+ .+.+|+|+||+|++||++||+||||||||||||+|+|+........|+|.+
T Consensus 175 ~~~I~i~nls~~y~---------------~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~ 239 (718)
T PLN03073 175 IKDIHMENFSISVG---------------GRDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILH 239 (718)
T ss_pred ceeEEEceEEEEeC---------------CCEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEE
Confidence 34799999999993 245999999999999999999999999999999999964110112388875
Q ss_pred CCccCC----Ch------------hhhcccEEEEccCCCCCCCCCHHHHHHH-----------------HHHhcCCCCCH
Q 006897 134 NCHQIK----KP------------AQLRKICGFVAQEDNLLPLLTVKETLMF-----------------SANFRLKGMSH 180 (627)
Q Consensus 134 ~g~~~~----~~------------~~~r~~ig~v~Q~~~l~~~lTV~e~l~~-----------------~~~~~~~~~~~ 180 (627)
.++.+. .. ..+++.+++++|++.+... ++.++... ... +......
T Consensus 240 ~~Q~~~g~~~t~~~~v~~~~~~~~~~~~~~~~~~~q~~~l~~~-~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~~~ 317 (718)
T PLN03073 240 VEQEVVGDDTTALQCVLNTDIERTQLLEEEAQLVAQQRELEFE-TETGKGKGANKDGVDKDAVSQRLEEIYK-RLELIDA 317 (718)
T ss_pred EeccCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhc-ccccccccccccccchHHHHHHHHHHHH-HHHhcCc
Confidence 443310 00 0123446778876443221 11111110 000 0000011
Q ss_pred HHHHHHHHHHHHHcCCc-c----ccCCcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCE
Q 006897 181 KEKEDRVESLMDELGLT-H----VAGSFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRT 237 (627)
Q Consensus 181 ~~~~~~v~~~l~~lgL~-~----~~~~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~T 237 (627)
.+.++++.++|+.+|+. + ...+++|||+|| ||++||+.++..+.+.|+++ +.|
T Consensus 318 ~~~~~r~~~~L~~lgl~~~~~~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~----~~t 393 (718)
T PLN03073 318 YTAEARAASILAGLSFTPEMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKW----PKT 393 (718)
T ss_pred chHHHHHHHHHHHCCCChHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHc----CCE
Confidence 13456788888999985 2 235677999999 99999999999999999875 579
Q ss_pred EEEEccCccHHHHHHhhhheeecCCeEE-eeCCHHHH
Q 006897 238 VVLSIHQPSYRILQYISKFLILSRGSVV-HYGSLELL 273 (627)
Q Consensus 238 ii~~tH~~~~~i~~~~D~i~vL~~G~iv-~~G~~~~~ 273 (627)
||++|||.+ .+.++||++++|++|++. +.|+.++.
T Consensus 394 viivsHd~~-~l~~~~d~i~~l~~g~i~~~~g~~~~~ 429 (718)
T PLN03073 394 FIVVSHARE-FLNTVVTDILHLHGQKLVTYKGDYDTF 429 (718)
T ss_pred EEEEECCHH-HHHHhCCEEEEEECCEEEEeCCCHHHH
Confidence 999999998 488899999999999996 67776543
|
|
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.7e-23 Score=256.90 Aligned_cols=169 Identities=23% Similarity=0.321 Sum_probs=132.6
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCccCCChhhhcccEEEEccCCCCCCCCC
Q 006897 83 PLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKKPAQLRKICGFVAQEDNLLPLLT 162 (627)
Q Consensus 83 ~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~~~~~~~~r~~ig~v~Q~~~l~~~lT 162 (627)
++.+|+|+||+|++||+++|+|||||||||||++|+|+++|++ |+|.+. +.+||++|++.+++ .|
T Consensus 672 ~~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~~---G~i~~~-----------~~i~yv~Q~~~l~~-~T 736 (1560)
T PTZ00243 672 PKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISE---GRVWAE-----------RSIAYVPQQAWIMN-AT 736 (1560)
T ss_pred CceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCCCCC---cEEEEC-----------CeEEEEeCCCccCC-Cc
Confidence 3569999999999999999999999999999999999999864 998752 46999999998875 59
Q ss_pred HHHHHHHHHHhcCCCCCHHHHH-----HHHHHHHHHc--CCcc----ccCCcCCccccC------------------CCC
Q 006897 163 VKETLMFSANFRLKGMSHKEKE-----DRVESLMDEL--GLTH----VAGSFVGDEENR------------------GIS 213 (627)
Q Consensus 163 V~e~l~~~~~~~~~~~~~~~~~-----~~v~~~l~~l--gL~~----~~~~~~gGe~qr------------------Pts 213 (627)
|+||+.++... ..+... ..+++.++.+ |++. ....++|||||| ||+
T Consensus 737 v~enI~~~~~~-----~~~~~~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~s 811 (1560)
T PTZ00243 737 VRGNILFFDEE-----DAARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLS 811 (1560)
T ss_pred HHHHHHcCChh-----hHHHHHHHHHHhhhHHHHHHhhccchHHhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccc
Confidence 99999985211 111111 1233444554 5532 334577999999 999
Q ss_pred CCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeCCHHHHH
Q 006897 214 GLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGSLELLE 274 (627)
Q Consensus 214 gLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~ 274 (627)
+||+.++..+++.+..... .|+|+|++||+++. .+.||+|++|++|++++.|+.+++.
T Consensus 812 aLD~~~~~~i~~~~~~~~~-~~~TvIlvTH~~~~--~~~ad~ii~l~~G~i~~~G~~~~l~ 869 (1560)
T PTZ00243 812 ALDAHVGERVVEECFLGAL-AGKTRVLATHQVHV--VPRADYVVALGDGRVEFSGSSADFM 869 (1560)
T ss_pred cCCHHHHHHHHHHHHHHhh-CCCEEEEEeCCHHH--HHhCCEEEEEECCEEEEecCHHHHH
Confidence 9999999999875432222 48999999999973 4789999999999999999998874
|
|
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=8.1e-23 Score=225.69 Aligned_cols=186 Identities=25% Similarity=0.309 Sum_probs=149.5
Q ss_pred ceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEEC
Q 006897 55 CKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVN 134 (627)
Q Consensus 55 ~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~ 134 (627)
.+|+++|++++| +.+.+++|+|+++.+|+.+||||+||||||||||+|+|...|+. |+|...
T Consensus 2 ~~i~~~~ls~~~---------------g~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~---G~i~~~ 63 (530)
T COG0488 2 SMITLENLSLAY---------------GDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDS---GEVTRP 63 (530)
T ss_pred ceEEEeeeEEee---------------CCceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCC---CeEeec
Confidence 379999999999 34579999999999999999999999999999999999998864 999764
Q ss_pred CccCCChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCC------C----------------------CCHHHHHHH
Q 006897 135 CHQIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLK------G----------------------MSHKEKEDR 186 (627)
Q Consensus 135 g~~~~~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~------~----------------------~~~~~~~~~ 186 (627)
+. .++||++|++.+.+..||.|.+.-+..-... . ...-+.+.+
T Consensus 64 ~~---------~~v~~l~Q~~~~~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~ 134 (530)
T COG0488 64 KG---------LRVGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEAR 134 (530)
T ss_pred CC---------ceEEEeCCCCCcCCCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHH
Confidence 31 2489999999999888999988765311000 0 000012356
Q ss_pred HHHHHHHcCCccc---cCCcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCc
Q 006897 187 VESLMDELGLTHV---AGSFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQP 245 (627)
Q Consensus 187 v~~~l~~lgL~~~---~~~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~ 245 (627)
+..+|..+|+.+. ...++||||.| ||+.||..+..-+-+.|++. .| |+|+||||-
T Consensus 135 ~~~~L~gLg~~~~~~~~~~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~---~g-tviiVSHDR 210 (530)
T COG0488 135 AEEALLGLGFPDEDRPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRY---PG-TVIVVSHDR 210 (530)
T ss_pred HHHHHhcCCCCcccCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhC---CC-cEEEEeCCH
Confidence 7788888888764 34566999988 99999999999999999864 46 999999998
Q ss_pred cHHHHHHhhhheeecCCeEE-eeCCHHH
Q 006897 246 SYRILQYISKFLILSRGSVV-HYGSLEL 272 (627)
Q Consensus 246 ~~~i~~~~D~i~vL~~G~iv-~~G~~~~ 272 (627)
.. +-++|++|+-+++|++. |.|..+.
T Consensus 211 ~F-Ld~V~t~I~~ld~g~l~~y~Gny~~ 237 (530)
T COG0488 211 YF-LDNVATHILELDRGKLTPYKGNYSS 237 (530)
T ss_pred HH-HHHHhhheEEecCCceeEecCCHHH
Confidence 86 88999999999999875 5666543
|
|
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=9.3e-22 Score=217.27 Aligned_cols=185 Identities=25% Similarity=0.364 Sum_probs=149.7
Q ss_pred CCcceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceE
Q 006897 52 KTTCKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSI 131 (627)
Q Consensus 52 ~~~~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i 131 (627)
.+...++++|+++.|++ .+.+++++||.|.+|+.+||+||||+|||||||+|+|...|. +|+|
T Consensus 317 ~g~~vl~~~~~~~~y~~--------------~~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~---~G~v 379 (530)
T COG0488 317 LGKLVLEFENVSKGYDG--------------GRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPL---SGTV 379 (530)
T ss_pred CCCeeEEEeccccccCC--------------CceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccC---CceE
Confidence 34558999999999942 257999999999999999999999999999999999999886 3988
Q ss_pred EECCccCCChhhhcccEEEEccCC-CCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCcc-----ccCCcCC
Q 006897 132 TVNCHQIKKPAQLRKICGFVAQED-NLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTH-----VAGSFVG 205 (627)
Q Consensus 132 ~i~g~~~~~~~~~r~~ig~v~Q~~-~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-----~~~~~~g 205 (627)
.+.- .-++||..|+. .+.+..|+.|++.-.. ....+..+...|..+++.. ....++|
T Consensus 380 ~~g~---------~v~igyf~Q~~~~l~~~~t~~d~l~~~~--------~~~~e~~~r~~L~~f~F~~~~~~~~v~~LSG 442 (530)
T COG0488 380 KVGE---------TVKIGYFDQHRDELDPDKTVLEELSEGF--------PDGDEQEVRAYLGRFGFTGEDQEKPVGVLSG 442 (530)
T ss_pred EeCC---------ceEEEEEEehhhhcCccCcHHHHHHhhC--------ccccHHHHHHHHHHcCCChHHHhCchhhcCH
Confidence 7632 13489999985 4557789999987532 1111567899999999863 3356779
Q ss_pred ccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEee
Q 006897 206 DEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHY 267 (627)
Q Consensus 206 Ge~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~ 267 (627)
|||.| ||+.||..+...+.+.|.+. .-|||+||||... +.++|++++.+.+ ++...
T Consensus 443 GEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f----~Gtvl~VSHDr~F-l~~va~~i~~~~~-~~~~~ 516 (530)
T COG0488 443 GEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDF----EGTVLLVSHDRYF-LDRVATRIWLVED-KVEEF 516 (530)
T ss_pred hHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhC----CCeEEEEeCCHHH-HHhhcceEEEEcC-ceeEc
Confidence 99988 99999999999999999876 3499999999986 8999999999998 65544
Q ss_pred -CCHHHHHHH
Q 006897 268 -GSLELLEET 276 (627)
Q Consensus 268 -G~~~~~~~~ 276 (627)
|..++..+.
T Consensus 517 ~g~y~~y~~~ 526 (530)
T COG0488 517 EGGYEDYLEQ 526 (530)
T ss_pred CCCHHHHHHh
Confidence 776665443
|
|
| >PF01061 ABC2_membrane: ABC-2 type transporter; InterPro: IPR013525 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.4e-23 Score=206.31 Aligned_cols=208 Identities=24% Similarity=0.428 Sum_probs=189.5
Q ss_pred HHHHHHHHHHHHHHhcCHHHH-HHHHHHHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHHHHHHHHHH-HHHhhHHHhh
Q 006897 344 YEIMVLCSRFWKIIYRTKQLF-LARTMQALVGGFGLGSVYVRVRKDEAGVAERLGLFAFSLSFLLSSTV-EALPIYLQER 421 (627)
Q Consensus 344 ~q~~~l~~R~~~~~~Rd~~~~-~~r~~~~~~~~l~~G~~f~~~~~~~~~~~~~~g~~ff~~~~~~~~~~-~~i~~~~~er 421 (627)
+|++.+++|+++..+|||.+. ..+++..++.++++|.+|.++++++++. ++.|++++.+.+.++... +.......||
T Consensus 1 ~q~~~l~~r~~~~~~r~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (210)
T PF01061_consen 1 RQIWALLRREFKRFWRNPFLGLIWSLIFPLLLLLIFGFIFGKLGNSQDGF-NRPGLIFGSIIFSFFSSISGSSISFERER 79 (210)
T ss_pred CHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHHHHHHHHhccccccccc-ccceeeehhhHHhhhhhcccchhhhhhhc
Confidence 599999999999999999888 8999999999999999999998544455 778877777776664433 3336788999
Q ss_pred HHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 006897 422 RVLMKEASREAYRISSYLIANTIVFLPFLFVVSLLFAIPVYWIVGLNPSIEAFVFFIFVVWLIVLMASSLVLFLSAISPD 501 (627)
Q Consensus 422 ~v~~rE~~~~~Y~~~~y~la~~l~~lp~~~~~~~~f~~i~Y~~~gl~~~~~~f~~f~~~~~l~~~~~~s~~~~i~~~~~~ 501 (627)
..+.||+.++.|++..|++|+.+.+++..++.++++.++.|++.|++.+ +|+.+++.+++..+++.++|.++++++++
T Consensus 80 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~g~~~~~~~~~ 157 (210)
T PF01061_consen 80 GTLERERASPLYSPFAYLLAKVLSAFLISLIISLIVLIIAYLLFGLDFE--SFFLFLLILLLSILCSSGLGLLLAALFPS 157 (210)
T ss_pred cccccccccccccchhhheeeccccccccccccchhhhhhhhhhccccc--cchheecccccccccccccccccccchhh
Confidence 9999999999999999999999999999999999999999999999988 77888889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhccccCCCCCcchhhhhhhhchhHHHHHHHHHHHh
Q 006897 502 FISGNSLICTVLGAFFLFSGYFIPKEYIPKYWIFMYYISLYRYPLDSLLTNEY 554 (627)
Q Consensus 502 ~~~a~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~W~~yiSp~~Y~~~~l~~nef 554 (627)
...+..+.+++..+++++||.++|.+.+|+|++|+.|+||++|+.|++..++|
T Consensus 158 ~~~~~~~~~~~~~~~~~~sg~~~p~~~lP~~~~~i~~~~P~~~~~~~~r~~~f 210 (210)
T PF01061_consen 158 FRDASAISSLILLLLFFLSGVFFPLSSLPSWLRWISYLNPLTYAVEALRAALF 210 (210)
T ss_pred hhhhhhhhhhcccccccceeeecchHHChHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 99999999999999999999999999999999999999999999999999886
|
ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A number of bacterial transport systems have been found to contain integral membrane components that have similar sequences []: these systems fit the characteristics of ATP-binding cassette transporters []. The proteins form homo- or hetero-oligomeric channels, allowing ATP-mediated transport. Hydropathy analysis of the proteins has revealed the presence of 6 possible transmembrane regions. These proteins belong to family 2 of ABC transporters.; GO: 0016020 membrane |
| >COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.87 E-value=4e-22 Score=204.18 Aligned_cols=180 Identities=19% Similarity=0.327 Sum_probs=145.4
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
.|+++|+.|.|.+.. --+..||++|++||++-|+|.||||||||+++|.|+.+|++ |+|.+||
T Consensus 322 ~lelrnvrfay~~~~--------------FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~Pqs---G~I~ldg 384 (546)
T COG4615 322 TLELRNVRFAYQDNA--------------FHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQS---GEILLDG 384 (546)
T ss_pred ceeeeeeeeccCccc--------------ceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccCCCC---CceeECC
Confidence 699999999995431 24789999999999999999999999999999999999975 9999999
Q ss_pred ccCCC--hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCcccc---C------CcC
Q 006897 136 HQIKK--PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVA---G------SFV 204 (627)
Q Consensus 136 ~~~~~--~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~---~------~~~ 204 (627)
+++.. .+++|+-++-||-|.++|+.+--.|+ +...+.++..|+++.|.+.. | +++
T Consensus 385 ~pV~~e~ledYR~LfSavFsDyhLF~~ll~~e~--------------~as~q~i~~~LqrLel~~ktsl~d~~fs~~kLS 450 (546)
T COG4615 385 KPVSAEQLEDYRKLFSAVFSDYHLFDQLLGPEG--------------KASPQLIEKWLQRLELAHKTSLNDGRFSNLKLS 450 (546)
T ss_pred ccCCCCCHHHHHHHHHHHhhhHhhhHhhhCCcc--------------CCChHHHHHHHHHHHHhhhhcccCCcccccccc
Confidence 99743 46788888888988888875211111 12345577778887775432 2 345
Q ss_pred CccccC-----------C-------CCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEe
Q 006897 205 GDEENR-----------G-------ISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVH 266 (627)
Q Consensus 205 gGe~qr-----------P-------tsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~ 266 (627)
.|||+| | -+.-||.-++.+.+.+.-+-+++|+||+.+|||-. -+..+||++.+++|++++
T Consensus 451 tGQkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIsHDd~--YF~~ADrll~~~~G~~~e 528 (546)
T COG4615 451 TGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDDH--YFIHADRLLEMRNGQLSE 528 (546)
T ss_pred cchHHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEecCch--hhhhHHHHHHHhcCceee
Confidence 899988 3 26789999999998888877889999999999976 488999999999999987
Q ss_pred eC
Q 006897 267 YG 268 (627)
Q Consensus 267 ~G 268 (627)
.-
T Consensus 529 ~t 530 (546)
T COG4615 529 LT 530 (546)
T ss_pred cc
Confidence 54
|
|
| >cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.8e-21 Score=193.74 Aligned_cols=170 Identities=22% Similarity=0.285 Sum_probs=113.7
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHH-HHHHcCCCCCCCccceEEEC----------CccCCCh--hhhc-ccE
Q 006897 83 PLHILKSVSFEARDSEILAVVGPSGTGKSSLL-RIISGRVRDQDFDPRSITVN----------CHQIKKP--AQLR-KIC 148 (627)
Q Consensus 83 ~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl-~~L~Gl~~~~~~~~G~i~i~----------g~~~~~~--~~~r-~~i 148 (627)
+.++|+||||++++||++||+||||||||||+ ..+... |++.+. ...+..+ .+.+ ...
T Consensus 7 ~~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i~~~--------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (226)
T cd03270 7 REHNLKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIYAE--------GQRRYVESLSAYARQFLGQMDKPDVDSIEGLSP 78 (226)
T ss_pred hhhccccceeecCCCcEEEEEcCCCCCHHHHHHHHHHHH--------HHHHHhhcccchhhhhhcccCccccccccCCCc
Confidence 45699999999999999999999999999996 444310 221110 0000001 1122 234
Q ss_pred EEEccCC--CCCCCCCHHH---HHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCcc-ccC----CcCCccccC--------
Q 006897 149 GFVAQED--NLLPLLTVKE---TLMFSANFRLKGMSHKEKEDRVESLMDELGLTH-VAG----SFVGDEENR-------- 210 (627)
Q Consensus 149 g~v~Q~~--~l~~~lTV~e---~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~----~~~gGe~qr-------- 210 (627)
++..|++ .+.+..+|.. ...+...+. ......++ .+.++.+||.+ ..+ .++|||+||
T Consensus 79 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~----~~~~~~~~-~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~laral~ 153 (226)
T cd03270 79 AIAIDQKTTSRNPRSTVGTVTEIYDYLRLLF----ARVGIRER-LGFLVDVGLGYLTLSRSAPTLSGGEAQRIRLATQIG 153 (226)
T ss_pred eEEecCCCCCCCCCccHHHHHHHHHHHHHHh----hhhhHHHH-HHHHHHCCCCcccccCccCcCCHHHHHHHHHHHHHH
Confidence 4545543 2344446543 222211111 12222333 56899999875 233 456999988
Q ss_pred ------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheee------cCCeEEeeC
Q 006897 211 ------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLIL------SRGSVVHYG 268 (627)
Q Consensus 211 ------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL------~~G~iv~~G 268 (627)
||+|||+.++..+.+.|+++++ .|.|+|++|||++ ++ ++||++++| ++|+|+++|
T Consensus 154 ~~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~-~g~tii~itH~~~-~~-~~~d~i~~l~~~~~~~~G~iv~~g 226 (226)
T cd03270 154 SGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRD-LGNTVLVVEHDED-TI-RAADHVIDIGPGAGVHGGEIVAQG 226 (226)
T ss_pred hCCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHh-CCCEEEEEEeCHH-HH-HhCCEEEEeCCCccccCCEEEecC
Confidence 7999999999999999999975 5899999999997 34 699999999 999999876
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.9e-20 Score=198.36 Aligned_cols=203 Identities=23% Similarity=0.317 Sum_probs=168.7
Q ss_pred CCcceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceE
Q 006897 52 KTTCKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSI 131 (627)
Q Consensus 52 ~~~~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i 131 (627)
++...|+++||+..-. .+...++||||++++||++||.|-.|-|-+.|+.+|+|+.++.. |+|
T Consensus 253 pg~~vL~V~~L~v~~~--------------~~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~---G~I 315 (501)
T COG3845 253 PGEVVLEVEDLSVKDR--------------RGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPAS---GRI 315 (501)
T ss_pred CCCeEEEEeeeEeecC--------------CCCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCC---ceE
Confidence 3456899999998542 22457999999999999999999999999999999999997753 999
Q ss_pred EECCccCC---Chhh-hcccEEEEccCC---CCCCCCCHHHHHHHHHHh-----cCCCCCHHHHHHHHHHHHHHcCCcc-
Q 006897 132 TVNCHQIK---KPAQ-LRKICGFVAQED---NLLPLLTVKETLMFSANF-----RLKGMSHKEKEDRVESLMDELGLTH- 198 (627)
Q Consensus 132 ~i~g~~~~---~~~~-~r~~ig~v~Q~~---~l~~~lTV~e~l~~~~~~-----~~~~~~~~~~~~~v~~~l~~lgL~~- 198 (627)
.++|+++. ++.+ .+..+||||.|. .+.+.+|+.||+.+...- +..-....+.++.+.++++++++..
T Consensus 316 ~l~G~~v~~~~~~~~~r~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~ 395 (501)
T COG3845 316 LLNGKDVLGRLSPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAP 395 (501)
T ss_pred EECCEeccccCCHHHHHhcCCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCC
Confidence 99999862 2333 446799999985 477889999999987532 1111356778888999999998852
Q ss_pred ----ccCCcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhh
Q 006897 199 ----VAGSFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKF 256 (627)
Q Consensus 199 ----~~~~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i 256 (627)
.+..++||.+|+ ||-|||..+.+.+.+.|.+.++ .|+.|+++|-|++ |+..+||||
T Consensus 396 ~~~~~a~~LSGGNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~-~G~AVLLiS~dLD-Eil~lsDrI 473 (501)
T COG3845 396 SPDAPARSLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRD-AGKAVLLISEDLD-EILELSDRI 473 (501)
T ss_pred CCCcchhhcCCcceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHh-cCCEEEEEehhHH-HHHHhhhee
Confidence 356778999887 9999999999999999999976 5999999999999 699999999
Q ss_pred eeecCCeEEeeCCHHHH
Q 006897 257 LILSRGSVVHYGSLELL 273 (627)
Q Consensus 257 ~vL~~G~iv~~G~~~~~ 273 (627)
.+|.+|+++...++++.
T Consensus 474 aVi~~Gri~~~~~~~~~ 490 (501)
T COG3845 474 AVIYEGRIVGIVPPEEA 490 (501)
T ss_pred eeeeCCceecccccccC
Confidence 99999999988777653
|
|
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.1e-20 Score=203.95 Aligned_cols=194 Identities=19% Similarity=0.361 Sum_probs=160.5
Q ss_pred CcceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEE
Q 006897 53 TTCKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSIT 132 (627)
Q Consensus 53 ~~~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~ 132 (627)
+.+.++++|++..- .++|+||++++||+++|.|-=|||+|-|+++|.|..++. .|+|.
T Consensus 260 ~~~~l~v~~l~~~~-------------------~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~---~G~i~ 317 (500)
T COG1129 260 GEPVLEVRNLSGGG-------------------KVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPAS---SGEIL 317 (500)
T ss_pred CCcEEEEecCCCCC-------------------ceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCC---CceEE
Confidence 34578999987531 489999999999999999999999999999999977664 39999
Q ss_pred ECCccCC--Ch-hhhcccEEEEccC---CCCCCCCCHHHHHHHHHHhcCC---CCCHHHHHHHHHHHHHHcCCcc-----
Q 006897 133 VNCHQIK--KP-AQLRKICGFVAQE---DNLLPLLTVKETLMFSANFRLK---GMSHKEKEDRVESLMDELGLTH----- 198 (627)
Q Consensus 133 i~g~~~~--~~-~~~r~~ig~v~Q~---~~l~~~lTV~e~l~~~~~~~~~---~~~~~~~~~~v~~~l~~lgL~~----- 198 (627)
++|+++. ++ ..++..++|||.| ..++..++|++|+.++...+.. -.+....++.+++..+.+++..
T Consensus 318 l~G~~v~~~sp~~Ai~~Gi~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~ 397 (500)
T COG1129 318 LDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQ 397 (500)
T ss_pred ECCEEccCCCHHHHHHcCCEeCCcccccCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccc
Confidence 9999863 23 4567889999987 4688899999999987321211 1355556677899999998853
Q ss_pred ccCCcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeec
Q 006897 199 VAGSFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILS 260 (627)
Q Consensus 199 ~~~~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~ 260 (627)
....++||-||+ ||.|+|.-++.+|.+++++++++ |++||++|-+++ |+..+||||+||+
T Consensus 398 ~v~~LSGGNQQKVvlarwL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~-G~ail~iSSElp-Ell~~~DRIlVm~ 475 (500)
T COG1129 398 PIGTLSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAE-GKAILMISSELP-ELLGLSDRILVMR 475 (500)
T ss_pred hhhcCCchhhhhHHHHHHHhcCCCEEEECCCCcCcccchHHHHHHHHHHHHHC-CCEEEEEeCChH-HHHhhCCEEEEEE
Confidence 345677998887 99999999999999999999975 999999999998 7999999999999
Q ss_pred CCeEEeeCCH
Q 006897 261 RGSVVHYGSL 270 (627)
Q Consensus 261 ~G~iv~~G~~ 270 (627)
+|+++..-+.
T Consensus 476 ~Gri~~e~~~ 485 (500)
T COG1129 476 EGRIVGELDR 485 (500)
T ss_pred CCEEEEEecc
Confidence 9999875433
|
|
| >cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.1e-20 Score=188.81 Aligned_cols=176 Identities=25% Similarity=0.333 Sum_probs=131.1
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHH-----cCC-----CCCC---C-----ccceEEECCccCCC-----
Q 006897 84 LHILKSVSFEARDSEILAVVGPSGTGKSSLLRIIS-----GRV-----RDQD---F-----DPRSITVNCHQIKK----- 140 (627)
Q Consensus 84 ~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~-----Gl~-----~~~~---~-----~~G~i~i~g~~~~~----- 140 (627)
.+-|+|||++|+.|++++|.|+||||||||++.+. ..+ .|.. . -.--|.++..++..
T Consensus 8 ~~nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~~~rs~ 87 (261)
T cd03271 8 ENNLKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGRTPRSN 87 (261)
T ss_pred hhcCCCceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCCCCCCc
Confidence 34699999999999999999999999999998652 110 0110 0 01236677666521
Q ss_pred h-------hhhcc----------------cEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCc
Q 006897 141 P-------AQLRK----------------ICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLT 197 (627)
Q Consensus 141 ~-------~~~r~----------------~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~ 197 (627)
+ .++|+ .+.|..++...+..+||.|++.|...+. ..+++.++|+.+||.
T Consensus 88 ~~ty~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~~~~--------~~~~~~~~L~~vgL~ 159 (261)
T cd03271 88 PATYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFENIP--------KIARKLQTLCDVGLG 159 (261)
T ss_pred HHHHHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHHhhh--------hHHHHHHHHHHcCCc
Confidence 1 11111 2556666666667899999999875321 134677899999997
Q ss_pred cc-c----CCcCCccccC---------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHH
Q 006897 198 HV-A----GSFVGDEENR---------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQ 251 (627)
Q Consensus 198 ~~-~----~~~~gGe~qr---------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~ 251 (627)
.. . .+++|||+|| ||+|||+..+..+.+.|+++.+ .|.|||+++|+++. + +
T Consensus 160 ~l~l~~~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~-~g~tvIiitH~~~~-i-~ 236 (261)
T cd03271 160 YIKLGQPATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVD-KGNTVVVIEHNLDV-I-K 236 (261)
T ss_pred hhhhcCccccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCHHH-H-H
Confidence 62 3 4566999988 8999999999999999999975 58999999999973 4 6
Q ss_pred Hhhhheee------cCCeEEeeCCH
Q 006897 252 YISKFLIL------SRGSVVHYGSL 270 (627)
Q Consensus 252 ~~D~i~vL------~~G~iv~~G~~ 270 (627)
.||+++.| ++|++++.|++
T Consensus 237 ~aD~ii~Lgp~~g~~~G~iv~~Gt~ 261 (261)
T cd03271 237 CADWIIDLGPEGGDGGGQVVASGTP 261 (261)
T ss_pred hCCEEEEecCCcCCCCCEEEEeCCC
Confidence 79999999 89999999874
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.1e-19 Score=172.00 Aligned_cols=208 Identities=22% Similarity=0.314 Sum_probs=156.8
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC-CCccceEEEC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQ-DFDPRSITVN 134 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~-~~~~G~i~i~ 134 (627)
.+.++||+..+... .+..++++++|+++.+||+-+++|+||||||-..|+|+|..+.. ..+.....++
T Consensus 3 LLDIrnL~IE~~Ts-----------qG~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~ 71 (330)
T COG4170 3 LLDIRNLTIEFKTS-----------QGWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFD 71 (330)
T ss_pred cccccceEEEEecC-----------CCceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccc
Confidence 47889999988543 35677999999999999999999999999999999999998753 1122334455
Q ss_pred CccCC--Chhhhc----ccEEEEccCCC--CCCCCCHHHHHHHHHHhc-CCCCC---HHHHHHHHHHHHHHcCCccccC-
Q 006897 135 CHQIK--KPAQLR----KICGFVAQEDN--LLPLLTVKETLMFSANFR-LKGMS---HKEKEDRVESLMDELGLTHVAG- 201 (627)
Q Consensus 135 g~~~~--~~~~~r----~~ig~v~Q~~~--l~~~lTV~e~l~~~~~~~-~~~~~---~~~~~~~v~~~l~~lgL~~~~~- 201 (627)
+.++. .+++.| +.|+++||++. +.|.-+|...|--..... .++.- -.-+++++-++|.++|+.+..|
T Consensus 72 ~idLL~L~Pr~RRk~ig~~isMIFQeP~sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDI 151 (330)
T COG4170 72 DIDLLRLSPRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDI 151 (330)
T ss_pred cchhhcCChHHhhhhhccchhhhhcCchhhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHH
Confidence 55542 233333 45789999974 667666655554321100 01100 0124577889999999986544
Q ss_pred ------CcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhhe
Q 006897 202 ------SFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFL 257 (627)
Q Consensus 202 ------~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~ 257 (627)
.+.-||-|+ ||+.+||.++.++.++|.++.+.+|+||++++||+.. +.+.||++-
T Consensus 152 M~SYP~ElTeGE~QKVMIA~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~~TtILL~s~Dl~~-is~W~d~i~ 230 (330)
T COG4170 152 MRSYPYELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHDLQM-ISQWADKIN 230 (330)
T ss_pred HHhCcchhccCcceeeeeehhhccCCceEeccCCCcccCccHHHHHHHHHHHhhccCCceEEEEcccHHH-HHHHhhheE
Confidence 223566655 9999999999999999999998899999999999995 999999999
Q ss_pred eecCCeEEeeCCHHHHHH
Q 006897 258 ILSRGSVVHYGSLELLEE 275 (627)
Q Consensus 258 vL~~G~iv~~G~~~~~~~ 275 (627)
||.-|+-++.++.+++.+
T Consensus 231 VlYCGQ~~ESa~~e~l~~ 248 (330)
T COG4170 231 VLYCGQTVESAPSEELVT 248 (330)
T ss_pred EEEecccccccchhHHhc
Confidence 999999999999988764
|
|
| >cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.6e-20 Score=181.66 Aligned_cols=149 Identities=15% Similarity=0.230 Sum_probs=110.2
Q ss_pred e-eceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCC------CccceEEECCccCCChhhhcccEEEEccCCCCCC
Q 006897 87 L-KSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQD------FDPRSITVNCHQIKKPAQLRKICGFVAQEDNLLP 159 (627)
Q Consensus 87 L-~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~------~~~G~i~i~g~~~~~~~~~r~~ig~v~Q~~~l~~ 159 (627)
+ +++++++++| +++|+||||||||||+++|+|++++.. ...|++.++|++... ...++.+++|||++..+
T Consensus 12 ~~~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~vfq~~~~~- 88 (197)
T cd03278 12 FADKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRK-PANFAEVTLTFDNSDGR- 88 (197)
T ss_pred cCCCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCC-CCceEEEEEEEEcCCCc-
Confidence 5 7899999999 999999999999999999999986541 123567777776422 23457899999998765
Q ss_pred CCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCC-ccccCCcCCccccC----------------------CCCCCC
Q 006897 160 LLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGL-THVAGSFVGDEENR----------------------GISGLD 216 (627)
Q Consensus 160 ~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL-~~~~~~~~gGe~qr----------------------PtsgLD 216 (627)
|+. . ..++++++++.-++ +.....++|||+|| |++|||
T Consensus 89 ---------~~~--~--------~~~~~~~~l~~~~~~~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~~~LD 149 (197)
T cd03278 89 ---------YSI--I--------SQGDVSEIIEAPGKKVQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAALD 149 (197)
T ss_pred ---------eeE--E--------ehhhHHHHHhCCCccccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCcccCC
Confidence 110 0 02345555555222 12234556777765 999999
Q ss_pred HHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecC
Q 006897 217 STSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSR 261 (627)
Q Consensus 217 ~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~ 261 (627)
+..+..+.+.|+++++ +.|||++||+++. .+.||+++.+..
T Consensus 150 ~~~~~~l~~~l~~~~~--~~tiIiitH~~~~--~~~~d~v~~~~~ 190 (197)
T cd03278 150 DANVERFARLLKEFSK--ETQFIVITHRKGT--MEAADRLYGVTM 190 (197)
T ss_pred HHHHHHHHHHHHHhcc--CCEEEEEECCHHH--HhhcceEEEEEe
Confidence 9999999999999853 6899999999973 578999999864
|
Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w |
| >PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.5e-19 Score=166.51 Aligned_cols=98 Identities=40% Similarity=0.703 Sum_probs=84.3
Q ss_pred eeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCccCCC--hhhhcccEEEEccCCCCCCCCCHH
Q 006897 87 LKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKK--PAQLRKICGFVAQEDNLLPLLTVK 164 (627)
Q Consensus 87 L~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~~~~--~~~~r~~ig~v~Q~~~l~~~lTV~ 164 (627)
|+|||+++++||+++|+||||||||||+++|+|..+|. .|+|.++|+++.. ....++.++|++|++.+++.+||.
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~---~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~ 77 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPD---SGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVR 77 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHES---EEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHH
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeeccccccc---ccccccccccccccccccccccccccccccccccccccc
Confidence 79999999999999999999999999999999999885 3999999998754 356788999999999999999999
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccCC
Q 006897 165 ETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAGS 202 (627)
Q Consensus 165 e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~ 202 (627)
|| ..+++++++++.+++.+..++
T Consensus 78 ~~---------------~~~~~~~~~l~~l~~~~~~~~ 100 (137)
T PF00005_consen 78 EN---------------ESDERIEEVLKKLGLEDLLDR 100 (137)
T ss_dssp HH---------------HHHHHHHHHHHHTTHGGGTGS
T ss_pred cc---------------ccccccccccccccccccccc
Confidence 99 224557888888887664443
|
ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D .... |
| >cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.7e-18 Score=175.43 Aligned_cols=168 Identities=15% Similarity=0.205 Sum_probs=110.7
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcC----------------CCCCCC---ccc--eEEECCccC----
Q 006897 84 LHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGR----------------VRDQDF---DPR--SITVNCHQI---- 138 (627)
Q Consensus 84 ~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl----------------~~~~~~---~~G--~i~i~g~~~---- 138 (627)
+.++++++ |++++|+||||||||||+++|+++ +.++.. ..+ ++.+++.+-
T Consensus 15 ~~~~~~~~-----~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~~~~~~~~~~v~i~~~~~~~~~~~ 89 (243)
T cd03272 15 QTVIEPFS-----PKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEGSGPSVMSAYVEIIFDNSDNRFPI 89 (243)
T ss_pred CcccccCC-----CCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCCCCCCCceEEEEEEEEcCCCccCC
Confidence 45788887 789999999999999999999843 333210 001 455555321
Q ss_pred C-ChhhhcccEEEEccCCCCCC-CCCHHHHHHHHHHhcCCCCCHH--HHHHHHHHHHHHcC-CccccCCcCCccccC---
Q 006897 139 K-KPAQLRKICGFVAQEDNLLP-LLTVKETLMFSANFRLKGMSHK--EKEDRVESLMDELG-LTHVAGSFVGDEENR--- 210 (627)
Q Consensus 139 ~-~~~~~r~~ig~v~Q~~~l~~-~lTV~e~l~~~~~~~~~~~~~~--~~~~~v~~~l~~lg-L~~~~~~~~gGe~qr--- 210 (627)
. ....+++.+++++|+..+++ ..|..|...+............ ....++.++++..+ .+.....++|||+||
T Consensus 90 ~~~~~~i~r~ig~~~~~~~l~~~~~t~~ei~~~l~~~gl~~~~~~~~~~qg~i~~l~~l~~~~~~~~~~lS~G~~~r~~l 169 (243)
T cd03272 90 DKEEVRLRRTIGLKKDEYFLDKKNVTKNDVMNLLESAGFSRSNPYYIVPQGKINSLTNMKQDEQQEMQQLSGGQKSLVAL 169 (243)
T ss_pred CCCEEEEEEEEECCCCEEEECCeEcCHHHHHHHHHHcCCCCCCCcEEEEcCchHHhhhccccccccccccCHHHHHHHHH
Confidence 1 12346678999999888776 3577666655443321110000 01223333333221 123345667888876
Q ss_pred -------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeec
Q 006897 211 -------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILS 260 (627)
Q Consensus 211 -------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~ 260 (627)
||+|||+.++..+++.|+++++ ++|+|+++|+++ +.++||++++|.
T Consensus 170 a~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~--~~~ii~~~h~~~--~~~~~d~i~~l~ 234 (243)
T cd03272 170 ALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSD--GAQFITTTFRPE--LLEVADKFYGVK 234 (243)
T ss_pred HHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC--CCEEEEEecCHH--HHhhCCEEEEEE
Confidence 8999999999999999999853 788999999864 689999999985
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.75 E-value=7e-18 Score=185.77 Aligned_cols=170 Identities=26% Similarity=0.369 Sum_probs=137.0
Q ss_pred ceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEEC
Q 006897 55 CKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVN 134 (627)
Q Consensus 55 ~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~ 134 (627)
..|+++||+..-+. .+..|++.++++++||.+.|.||||||||||+|+|+|+.+-.+ |+|..-
T Consensus 391 ~~i~~~nl~l~~p~--------------~~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~---G~I~~P 453 (604)
T COG4178 391 HGITLENLSLRTPD--------------GQTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGS---GRISMP 453 (604)
T ss_pred ceeEEeeeeEECCC--------------CCeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCC---CceecC
Confidence 47999999987642 2378999999999999999999999999999999999998643 776532
Q ss_pred CccCCChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccC----------CcC
Q 006897 135 CHQIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAG----------SFV 204 (627)
Q Consensus 135 g~~~~~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~----------~~~ 204 (627)
-...+-|+||.|.+... |.+|.|.|+... .+-.++.+.++|.++||+++.+ .++
T Consensus 454 ---------~~~~~lflpQ~PY~p~G-tLre~l~YP~~~------~~~~d~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS 517 (604)
T COG4178 454 ---------ADSALLFLPQRPYLPQG-TLREALCYPNAA------PDFSDAELVAVLHKVGLGDLAERLDEEDRWDRVLS 517 (604)
T ss_pred ---------CCCceEEecCCCCCCCc-cHHHHHhCCCCC------CCCChHHHHHHHHHcCcHHHHHHHhccCcHhhhcC
Confidence 12347899999998776 999999986321 1134567889999999987653 345
Q ss_pred CccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecC
Q 006897 205 GDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSR 261 (627)
Q Consensus 205 gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~ 261 (627)
+||||| .|++||+.++..+.+++++-. .+.|||-|.|++. +..+.++.+-+.+
T Consensus 518 ~GEqQRlafARilL~kP~~v~LDEATsALDe~~e~~l~q~l~~~l--p~~tvISV~Hr~t--l~~~h~~~l~l~~ 588 (604)
T COG4178 518 GGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEEL--PDATVISVGHRPT--LWNFHSRQLELLD 588 (604)
T ss_pred hhHHHHHHHHHHHHcCCCEEEEecchhccChHHHHHHHHHHHhhC--CCCEEEEeccchh--hHHHHhhheeecc
Confidence 999999 689999999999999998743 5799999999986 5778887666543
|
|
| >cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.74 E-value=5.1e-19 Score=180.33 Aligned_cols=158 Identities=13% Similarity=0.195 Sum_probs=116.2
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCc-cCCCh----hhhcccEEEEccCC---------CCCCCCC
Q 006897 97 SEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCH-QIKKP----AQLRKICGFVAQED---------NLLPLLT 162 (627)
Q Consensus 97 Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~-~~~~~----~~~r~~ig~v~Q~~---------~l~~~lT 162 (627)
..+++|+||||||||||+++|++++.+.. .|++...+. ++... ...+..+++++|++ .+.|.+|
T Consensus 25 ~~~~~IvG~NGsGKStll~Ai~~ll~~~~--~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~~lt 102 (251)
T cd03273 25 PQFNAITGLNGSGKSNILDAICFVLGITN--LSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYPEIT 102 (251)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcccc--cccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCceEE
Confidence 44999999999999999999999987642 267777665 32111 12245799999985 3456789
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCc--------------------c----ccCCcCCccccC--------
Q 006897 163 VKETLMFSANFRLKGMSHKEKEDRVESLMDELGLT--------------------H----VAGSFVGDEENR-------- 210 (627)
Q Consensus 163 V~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~--------------------~----~~~~~~gGe~qr-------- 210 (627)
|.+++..+...+..-..++...+++.++|+.+|+. + ....++|||+||
T Consensus 103 V~r~I~~~~~~~~~in~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~~~~~~~~lS~G~~qr~~la~al~ 182 (251)
T cd03273 103 VTRQIVLGGTNKYLINGHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGVWKESLTELSGGQRSLVALSLILA 182 (251)
T ss_pred EEEEEEcCCceEEEECCEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHhhcccccccCHHHHHHHHHHHHHH
Confidence 99988764321110001233457899999999986 1 223456888876
Q ss_pred --------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeec
Q 006897 211 --------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILS 260 (627)
Q Consensus 211 --------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~ 260 (627)
||++||+..+..+.+.|+++. .|.|+|++||+. ++.+.||+++-+.
T Consensus 183 ~~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~--~g~~ii~iSH~~--~~~~~~d~v~~~~ 242 (251)
T cd03273 183 LLLFKPAPMYILDEVDAALDLSHTQNIGRMIKTHF--KGSQFIVVSLKE--GMFNNANVLFRTR 242 (251)
T ss_pred HhhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHc--CCCEEEEEECCH--HHHHhCCEEEEEE
Confidence 999999999999999999984 378999999995 4788899998765
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.6e-18 Score=169.53 Aligned_cols=149 Identities=13% Similarity=0.276 Sum_probs=108.0
Q ss_pred ceEEEEeCCeEEEEECCCCCcHHHHHHHHH----cCCCCCCCccceEEECCccCCChhhhcccEEEEccCC-----CCCC
Q 006897 89 SVSFEARDSEILAVVGPSGTGKSSLLRIIS----GRVRDQDFDPRSITVNCHQIKKPAQLRKICGFVAQED-----NLLP 159 (627)
Q Consensus 89 ~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~----Gl~~~~~~~~G~i~i~g~~~~~~~~~r~~ig~v~Q~~-----~l~~ 159 (627)
..++++.+| +++|+||||||||||+++|. |...++. |.+. ...+.......+..+++++|++ ....
T Consensus 15 ~~~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~---~~~~-~~~~~i~~~~~~~~v~~~f~~~~~~~~~v~r 89 (204)
T cd03240 15 RSEIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELPPNS---KGGA-HDPKLIREGEVRAQVKLAFENANGKKYTITR 89 (204)
T ss_pred ceEEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCccc---cccc-chHHHHhCCCCcEEEEEEEEeCCCCEEEEEE
Confidence 344667788 99999999999999999995 8877643 4443 1112112233456799999987 3445
Q ss_pred CCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccCCcCCccccC------------------------CCCCC
Q 006897 160 LLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAGSFVGDEENR------------------------GISGL 215 (627)
Q Consensus 160 ~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~gGe~qr------------------------PtsgL 215 (627)
.+|+.||+.+. +..+ +++.+ +.....+++||+|| |+++|
T Consensus 90 ~~~~~~~~~~~--------~~~~----~~~~~-----~~~~~~LS~G~~~~~~la~rlala~al~~~p~illlDEP~~~L 152 (204)
T cd03240 90 SLAILENVIFC--------HQGE----SNWPL-----LDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNL 152 (204)
T ss_pred EhhHhhceeee--------chHH----HHHHH-----hcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCCcccc
Confidence 56889998653 1122 23333 33445677888872 99999
Q ss_pred CHHHHH-HHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecC
Q 006897 216 DSTSAL-QVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSR 261 (627)
Q Consensus 216 D~~~~~-~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~ 261 (627)
|+..+. .+.+.|++++++.|.|||++||+++ ..+.||+++.|.+
T Consensus 153 D~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~--~~~~~d~i~~l~~ 197 (204)
T cd03240 153 DEENIEESLAEIIEERKSQKNFQLIVITHDEE--LVDAADHIYRVEK 197 (204)
T ss_pred CHHHHHHHHHHHHHHHHhccCCEEEEEEecHH--HHhhCCEEEEEee
Confidence 999999 9999999997654789999999986 4578999999965
|
The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence. |
| >KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.1e-17 Score=178.31 Aligned_cols=187 Identities=23% Similarity=0.315 Sum_probs=143.9
Q ss_pred CcceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEE
Q 006897 53 TTCKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSIT 132 (627)
Q Consensus 53 ~~~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~ 132 (627)
+++.+.++|++|.|.++ ..++++++|-|+.++.+|+|||||+|||||||++.|.+.|.. |.+.
T Consensus 386 p~pvi~~~nv~F~y~~~--------------~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~---G~vs 448 (614)
T KOG0927|consen 386 PPPVIMVQNVSFGYSDN--------------PMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTI---GMVS 448 (614)
T ss_pred CCCeEEEeccccCCCCc--------------chhhhhhhcccCcccceeEecCCCCchhhhHHHHhhcccccc---cccc
Confidence 35579999999999532 258999999999999999999999999999999999999964 8775
Q ss_pred ECCccCCChhhhcccEEEEccC--CCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCcccc-----CCcCC
Q 006897 133 VNCHQIKKPAQLRKICGFVAQE--DNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVA-----GSFVG 205 (627)
Q Consensus 133 i~g~~~~~~~~~r~~ig~v~Q~--~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~-----~~~~g 205 (627)
-.- ..++++--|+ ..+.-..++.|++.-.. +.+...+.+..+|.++||+... .++++
T Consensus 449 ~~~---------H~~~~~y~Qh~~e~ldl~~s~le~~~~~~-------~~~~~~e~~r~ilgrfgLtgd~q~~p~~~LS~ 512 (614)
T KOG0927|consen 449 RHS---------HNKLPRYNQHLAEQLDLDKSSLEFMMPKF-------PDEKELEEMRSILGRFGLTGDAQVVPMSQLSD 512 (614)
T ss_pred ccc---------cccchhhhhhhHhhcCcchhHHHHHHHhc-------cccchHHHHHHHHHHhCCCccccccchhhccc
Confidence 332 2234455554 23444567877775321 1233456789999999998443 34568
Q ss_pred ccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeE-Ee
Q 006897 206 DEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSV-VH 266 (627)
Q Consensus 206 Ge~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~i-v~ 266 (627)
|||.| ||+|||..+...+.+.|.+. .| +||++|||... |.++++++.+..+|.+ .+
T Consensus 513 Gqr~rVlFa~l~~kqP~lLlLDEPtnhLDi~tid~laeaiNe~---~G-gvv~vSHDfrl-I~qVaeEi~~c~~~~~~~~ 587 (614)
T KOG0927|consen 513 GQRRRVLFARLAVKQPHLLLLDEPTNHLDIETIDALAEAINEF---PG-GVVLVSHDFRL-ISQVAEEIWVCENGTVTKW 587 (614)
T ss_pred ccchhHHHHHHHhcCCcEEEecCCCcCCCchhHHHHHHHHhcc---CC-ceeeeechhhH-HHHHHHHhHhhccCceeec
Confidence 99988 99999999999999999875 24 89999999995 9999999999998876 45
Q ss_pred eCCHHHHHHHH
Q 006897 267 YGSLELLEETI 277 (627)
Q Consensus 267 ~G~~~~~~~~~ 277 (627)
.|+.....+..
T Consensus 588 ~G~i~~yk~~l 598 (614)
T KOG0927|consen 588 DGDIEIYKEHL 598 (614)
T ss_pred CccHHHHHHHH
Confidence 67766554443
|
|
| >KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription] | Back alignment and domain information |
|---|
Probab=99.73 E-value=8.4e-17 Score=152.31 Aligned_cols=194 Identities=19% Similarity=0.276 Sum_probs=143.0
Q ss_pred cceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEE
Q 006897 54 TCKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITV 133 (627)
Q Consensus 54 ~~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i 133 (627)
...|+++++.|+|+.. .+++-|+|++++.|....++|.||||||||||+|+|-.-.. .|.|.+
T Consensus 11 ~~aievsgl~f~y~~~--------------dP~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~---~~~v~V 73 (291)
T KOG2355|consen 11 DFAIEVSGLQFKYKVS--------------DPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVG---GGVVQV 73 (291)
T ss_pred cceEEEeccEEecccC--------------CceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCccccc---CCeEEE
Confidence 3469999999999532 36899999999999999999999999999999999976543 289999
Q ss_pred CCccCCCh-------------hhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCc--c
Q 006897 134 NCHQIKKP-------------AQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLT--H 198 (627)
Q Consensus 134 ~g~~~~~~-------------~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~--~ 198 (627)
+|++.... .++.+.++.-- +-.+-..+++.+.| |+. .+.. .+ |-+++++.++++ =
T Consensus 74 lgrsaFhDt~l~~Sgdl~YLGgeW~~~~~~ag-evplq~D~sae~mi-fgV----~g~d-p~---Rre~LI~iLDIdl~W 143 (291)
T KOG2355|consen 74 LGRSAFHDTSLESSGDLSYLGGEWSKTVGIAG-EVPLQGDISAEHMI-FGV----GGDD-PE---RREKLIDILDIDLRW 143 (291)
T ss_pred cCcCccccccccccCceeEecccccccccccc-cccccccccHHHHH-hhc----cCCC-hh---HhhhhhhheeccceE
Confidence 99875221 12333333322 22223356775544 432 2222 23 344555656554 3
Q ss_pred ccCCcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeec
Q 006897 199 VAGSFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILS 260 (627)
Q Consensus 199 ~~~~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~ 260 (627)
..++.+.|||+| -|-.||..++.++++.+++-+++.|.||+..||-.+- ++....+++.|+
T Consensus 144 RmHkvSDGqrRRVQicMGLL~PfkVLLLDEVTVDLDVlARadLLeFlkeEce~RgatIVYATHIFDG-Le~Wpthl~yi~ 222 (291)
T KOG2355|consen 144 RMHKVSDGQRRRVQICMGLLKPFKVLLLDEVTVDLDVLARADLLEFLKEECEQRGATIVYATHIFDG-LETWPTHLVYIK 222 (291)
T ss_pred EEeeccccchhhhHHHHhcccceeEEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEEEEeeeccc-hhhcchhEEEec
Confidence 446677899988 3568999999999999999999999999999999985 889999999999
Q ss_pred CCeEEeeCCHHHHHH
Q 006897 261 RGSVVHYGSLELLEE 275 (627)
Q Consensus 261 ~G~iv~~G~~~~~~~ 275 (627)
+|+++..-+.+.+.+
T Consensus 223 ~Gkl~~~l~~~~i~e 237 (291)
T KOG2355|consen 223 SGKLVDNLKYQKIKE 237 (291)
T ss_pred CCeeeeccccchhhh
Confidence 999987555544443
|
|
| >PRK00635 excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=4.6e-17 Score=198.14 Aligned_cols=115 Identities=21% Similarity=0.210 Sum_probs=91.5
Q ss_pred CCCCCCHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHHHcCCccc-c----CCcCCccccC--------------------
Q 006897 157 LLPLLTVKETLMFSANFRL-KGMSHKEKEDRVESLMDELGLTHV-A----GSFVGDEENR-------------------- 210 (627)
Q Consensus 157 l~~~lTV~e~l~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~-~----~~~~gGe~qr-------------------- 210 (627)
.+...||.|+|.++..-.. .....++..+++ ++|+.+||.+. . .+++|||+||
T Consensus 759 ~~~~~tI~evL~mtv~ea~~~f~~~~~i~~~l-~~L~~vGL~~l~l~q~~~tLSGGE~QRV~LAraL~~~~~~P~LLILD 837 (1809)
T PRK00635 759 RYKGKNIADILEMTAYEAEKFFLDEPSIHEKI-HALCSLGLDYLPLGRPLSSLSGGEIQRLKLAYELLAPSKKPTLYVLD 837 (1809)
T ss_pred ccCCCCHHHHHHcCHHHHHHcccChHHHHHHH-HHHHHcCCcchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEe
Confidence 4567899999988754211 111234556666 58899999765 3 3456999988
Q ss_pred -CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeec------CCeEEeeCCHHHHHH
Q 006897 211 -GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILS------RGSVVHYGSLELLEE 275 (627)
Q Consensus 211 -PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~------~G~iv~~G~~~~~~~ 275 (627)
||+|||+.++..+++.|+++++ .|.|||+++|+++. + +.||++++|. +|++++.|+++++..
T Consensus 838 EPTsGLD~~~~~~Ll~lL~~L~~-~G~TVIiIsHdl~~-i-~~aDrVi~L~p~gg~~~G~iv~~Gtpeel~~ 906 (1809)
T PRK00635 838 EPTTGLHTHDIKALIYVLQSLTH-QGHTVVIIEHNMHV-V-KVADYVLELGPEGGNLGGYLLASCSPEELIH 906 (1809)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHH-H-HhCCEEEEEccCCCCCCCEEEEeCCHHHHHh
Confidence 9999999999999999999975 58999999999983 5 8999999996 789999999988753
|
|
| >cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.4e-19 Score=179.42 Aligned_cols=165 Identities=13% Similarity=0.152 Sum_probs=114.8
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
.|+++|.. +| +.+.+++++++ ++++|+||||||||||+++|.-. +|
T Consensus 5 ~l~l~nfk-~~---------------~~~~~l~~~~~-----~i~~ivGpNGaGKSTll~~i~~~-------------~G 50 (212)
T cd03274 5 KLVLENFK-SY---------------AGEQVIGPFHK-----SFSAIVGPNGSGKSNVIDSMLFV-------------FG 50 (212)
T ss_pred EEEEECcc-cC---------------CCCeeeccCCC-----CeEEEECCCCCCHHHHHHHHHHH-------------hc
Confidence 46777765 56 23468999987 89999999999999999999722 22
Q ss_pred ccCCChhhhc-ccEEEEccCCCCCCCCCHHHHHHHHHHhc------CCCCCHHHHHH--HHHHHHHHcCCccccCC----
Q 006897 136 HQIKKPAQLR-KICGFVAQEDNLLPLLTVKETLMFSANFR------LKGMSHKEKED--RVESLMDELGLTHVAGS---- 202 (627)
Q Consensus 136 ~~~~~~~~~r-~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~------~~~~~~~~~~~--~v~~~l~~lgL~~~~~~---- 202 (627)
.+. ...+ +++++++|+..+++.+|+++++.+..... ..+...++... ...++++.++|.+..++
T Consensus 51 ~~~---~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~v~~~~~~~~~~L~~~~~~~~~~ 127 (212)
T cd03274 51 FRA---SKMRQKKLSDLIHNSAGHPNLDSCSVEVHFQEIIDKPLLKSKGIDLDHNRFLILQGEVEQIAQMPKKSWKNISN 127 (212)
T ss_pred cCH---HHhhhhhHHHHhcCCCCCCCCceEEEEEEEEeCCCHHHHHHCCcCCCCCceEEcCCcEEEeeccccccccchhh
Confidence 221 1222 46889999888888888888876643221 01111111110 12455566677654443
Q ss_pred cCCccccC----------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeec
Q 006897 203 FVGDEENR----------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILS 260 (627)
Q Consensus 203 ~~gGe~qr----------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~ 260 (627)
+++||+|| ||+|||+.++..+.+.|++++ .+.|+|++||++ ++.++|||+++|.
T Consensus 128 lS~G~~~r~~la~al~~~~~~~p~ililDEPt~gLD~~~~~~l~~~l~~~~--~~~~~iivs~~~--~~~~~~d~v~~~~ 203 (212)
T cd03274 128 LSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFRNVSIVANYIKERT--KNAQFIVISLRN--NMFELADRLVGIY 203 (212)
T ss_pred cCHHHHHHHHHHHHHHhcccCCCCEEEEcCCCcCCCHHHHHHHHHHHHHHc--CCCEEEEEECcH--HHHHhCCEEEEEE
Confidence 34676654 899999999999999999985 357899999996 4789999999996
Q ss_pred C
Q 006897 261 R 261 (627)
Q Consensus 261 ~ 261 (627)
.
T Consensus 204 ~ 204 (212)
T cd03274 204 K 204 (212)
T ss_pred e
Confidence 4
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >PRK00349 uvrA excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=99.71 E-value=9.1e-17 Score=188.10 Aligned_cols=104 Identities=26% Similarity=0.356 Sum_probs=84.7
Q ss_pred CCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccc-----cCCcCCccccC---------------------CCCC
Q 006897 161 LTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHV-----AGSFVGDEENR---------------------GISG 214 (627)
Q Consensus 161 lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-----~~~~~gGe~qr---------------------Ptsg 214 (627)
+||.|++.|...+. . ..+..+.|+.+||... ..+++|||+|| ||+|
T Consensus 792 ltv~E~l~~f~~~~-------~-i~~~l~~L~~vgL~~l~l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsG 863 (943)
T PRK00349 792 MTVEEALEFFEAIP-------K-IARKLQTLVDVGLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTG 863 (943)
T ss_pred CcHHHHHHHHHhch-------h-hhHHHHHHHHCCCCcccccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCC
Confidence 78999988865321 1 1234678999999752 34567999988 8899
Q ss_pred CCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheee------cCCeEEeeCCHHHHHH
Q 006897 215 LDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLIL------SRGSVVHYGSLELLEE 275 (627)
Q Consensus 215 LD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL------~~G~iv~~G~~~~~~~ 275 (627)
||+..+..+++.|+++.+ .|.|||+++|+++. + +.||+++.| ++|++++.|+++++.+
T Consensus 864 LD~~~~~~L~~~L~~l~~-~G~TVIiitH~~~~-i-~~aD~ii~Lgp~~G~~~G~Iv~~Gt~~el~~ 927 (943)
T PRK00349 864 LHFEDIRKLLEVLHRLVD-KGNTVVVIEHNLDV-I-KTADWIIDLGPEGGDGGGEIVATGTPEEVAK 927 (943)
T ss_pred CCHHHHHHHHHHHHHHHh-CCCEEEEEecCHHH-H-HhCCEEEEecCCcCCCCCEEEEeCCHHHHHh
Confidence 999999999999999975 58999999999973 4 689999999 6899999999988753
|
|
| >cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends | Back alignment and domain information |
|---|
Probab=99.70 E-value=4.8e-17 Score=161.69 Aligned_cols=167 Identities=17% Similarity=0.239 Sum_probs=106.5
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEe-CCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEEC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEAR-DSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVN 134 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~-~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~ 134 (627)
.|+++|.. +|.. -++++|+.. +|++++|+||||||||||+++|++.+-.. ..+....+
T Consensus 5 ~i~l~nf~-~y~~------------------~~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~--~~~~~~~~ 63 (213)
T cd03279 5 KLELKNFG-PFRE------------------EQVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGK--TPRYGRQE 63 (213)
T ss_pred EEEEECCc-CcCC------------------ceEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEecC--ccccccch
Confidence 47888887 6521 156667644 59999999999999999999999654211 11222222
Q ss_pred -CccCCChhhhcccEEEEccCCCC------CCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccc----cCCc
Q 006897 135 -CHQIKKPAQLRKICGFVAQEDNL------LPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHV----AGSF 203 (627)
Q Consensus 135 -g~~~~~~~~~r~~ig~v~Q~~~l------~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~----~~~~ 203 (627)
..+.......+..+++++|+... ++.++..+.... + .++..++++. ...+
T Consensus 64 ~~~~~~~~~~~~~~v~~~f~~~~~~~~~~r~~gl~~~~~~~~-----------------~--~l~~g~l~~~l~~~~~~l 124 (213)
T cd03279 64 NLRSVFAPGEDTAEVSFTFQLGGKKYRVERSRGLDYDQFTRI-----------------V--LLPQGEFDRFLARPVSTL 124 (213)
T ss_pred hHHHHhcCCCccEEEEEEEEECCeEEEEEEecCCCHHHHHHh-----------------h--hhhhcchHHHhcCCcccc
Confidence 11111223345679999998643 222333322211 0 0111112111 1223
Q ss_pred CCccccC----------------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhh
Q 006897 204 VGDEENR----------------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISK 255 (627)
Q Consensus 204 ~gGe~qr----------------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~ 255 (627)
+|||+|| |+++||+.++..+.+.|+++++ .|.|||++||+++ .+...+|+
T Consensus 125 S~G~~~r~~la~al~~~p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~-~~~tii~itH~~~-~~~~~~~~ 202 (213)
T cd03279 125 SGGETFLASLSLALALSEVLQNRGGARLEALFIDEGFGTLDPEALEAVATALELIRT-ENRMVGVISHVEE-LKERIPQR 202 (213)
T ss_pred CHHHHHHHHHHHHHHhHHHhhhccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCCEEEEEECchH-HHHhhCcE
Confidence 3444332 8899999999999999999975 4889999999998 47889999
Q ss_pred heeecCCeE
Q 006897 256 FLILSRGSV 264 (627)
Q Consensus 256 i~vL~~G~i 264 (627)
++++++|..
T Consensus 203 i~~~~~~~~ 211 (213)
T cd03279 203 LEVIKTPGG 211 (213)
T ss_pred EEEEecCCC
Confidence 999998853
|
They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini. |
| >TIGR00630 uvra excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.1e-15 Score=178.66 Aligned_cols=103 Identities=24% Similarity=0.332 Sum_probs=82.2
Q ss_pred CCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccc-----cCCcCCccccC---------------------CCC
Q 006897 160 LLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHV-----AGSFVGDEENR---------------------GIS 213 (627)
Q Consensus 160 ~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-----~~~~~gGe~qr---------------------Pts 213 (627)
.|||.|.+.|...+. . ..+..++|+.+||... ..+++|||+|| ||+
T Consensus 789 ~~tv~e~~~f~~~~~--~------i~~~l~~L~~~gL~~l~l~~~~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPts 860 (924)
T TIGR00630 789 DMTVEEAYEFFEAVP--S------ISRKLQTLCDVGLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTT 860 (924)
T ss_pred CCcHHHHHHHHHhcc--c------hhHHHHHHHHcCCCchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCC
Confidence 467777777754321 1 1235678899999752 35567999988 999
Q ss_pred CCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheee------cCCeEEeeCCHHHH
Q 006897 214 GLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLIL------SRGSVVHYGSLELL 273 (627)
Q Consensus 214 gLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL------~~G~iv~~G~~~~~ 273 (627)
|||+..+..+++.|+++.+ .|.|||+++|+++. + +.||++++| ++|++++.|+++++
T Consensus 861 gLD~~~~~~L~~~L~~l~~-~G~TVIvi~H~~~~-i-~~aD~ii~Lgp~~G~~gG~iv~~G~~~~l 923 (924)
T TIGR00630 861 GLHFDDIKKLLEVLQRLVD-QGNTVVVIEHNLDV-I-KTADYIIDLGPEGGDGGGTIVASGTPEEV 923 (924)
T ss_pred CCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCHHH-H-HhCCEEEEecCCccCCCCEEEEeCCHHHh
Confidence 9999999999999999975 58999999999973 4 679999999 79999999998764
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=99.65 E-value=8e-16 Score=165.25 Aligned_cols=178 Identities=17% Similarity=0.231 Sum_probs=137.1
Q ss_pred cceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEE
Q 006897 54 TCKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITV 133 (627)
Q Consensus 54 ~~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i 133 (627)
+..|++++|+..-++ .+..+++|+||+|++|+-+.|.||||||||+|+|+|+|+.+..+ |.+.-
T Consensus 431 Dn~i~~e~v~l~tPt-------------~g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~---G~l~k 494 (659)
T KOG0060|consen 431 DNAIEFEEVSLSTPT-------------NGDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTG---GKLTK 494 (659)
T ss_pred cceEEeeeeeecCCC-------------CCceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccccCC---CeEEe
Confidence 357999999987632 24468899999999999999999999999999999999998643 88864
Q ss_pred CCccCCChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccc--------------
Q 006897 134 NCHQIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHV-------------- 199 (627)
Q Consensus 134 ~g~~~~~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-------------- 199 (627)
-.+. --+.+-||||.|.+--+ |.||.+.|+...- ....+...++++.+.|+.++|.++
T Consensus 495 ~~~~------~~~~lfflPQrPYmt~G-TLRdQvIYP~~~~-~~~~~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~d 566 (659)
T KOG0060|consen 495 PTDG------GPKDLFFLPQRPYMTLG-TLRDQVIYPLKAE-DMDSKSASDEDILRILENVQLGHLLEREGGLDQQVDWD 566 (659)
T ss_pred cccC------CCCceEEecCCCCcccc-chhheeeccCccc-cccccCCCHHHHHHHHHHhhhhhHHHHhCCCCchhhcc
Confidence 3322 11458899999987666 9999999974211 111222345677888888877653
Q ss_pred -cCCcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeec
Q 006897 200 -AGSFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILS 260 (627)
Q Consensus 200 -~~~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~ 260 (627)
.+.+++||+|| -||++|......+.+.+++ .|+|.|-|.|+.+ +.++-|.++-|+
T Consensus 567 W~dvLS~GEqQRLa~ARLfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~----~giT~iSVgHRkS--L~kfHd~~L~~~ 640 (659)
T KOG0060|consen 567 WMDVLSPGEQQRLAFARLFYHKPKFAILDECTSAVTEDVEGALYRKCRE----MGITFISVGHRKS--LWKFHDYVLRMD 640 (659)
T ss_pred HHhhcCHHHHHHHHHHHHHhcCCceEEeechhhhccHHHHHHHHHHHHH----cCCeEEEeccHHH--HHhhhhEEEEec
Confidence 34567999999 5899999888888877765 5899999999987 577778888887
Q ss_pred C
Q 006897 261 R 261 (627)
Q Consensus 261 ~ 261 (627)
.
T Consensus 641 g 641 (659)
T KOG0060|consen 641 G 641 (659)
T ss_pred C
Confidence 5
|
|
| >KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.60 E-value=3.1e-15 Score=155.11 Aligned_cols=180 Identities=19% Similarity=0.302 Sum_probs=135.1
Q ss_pred cceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEE
Q 006897 54 TCKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITV 133 (627)
Q Consensus 54 ~~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i 133 (627)
++.|-+.||+|.|+ +.++++++++|-|.--..+||+||||.||||||++|.|-+.|.. |+..
T Consensus 584 PPvLGlH~VtFgy~--------------gqkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~---GE~R- 645 (807)
T KOG0066|consen 584 PPVLGLHDVTFGYP--------------GQKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPND---GELR- 645 (807)
T ss_pred CCeeecccccccCC--------------CCCchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCCc---chhh-
Confidence 34799999999995 34578999999999999999999999999999999999999874 6543
Q ss_pred CCccCCChhhhcccEEEEccCC--CCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccCC-----cCCc
Q 006897 134 NCHQIKKPAQLRKICGFVAQED--NLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAGS-----FVGD 206 (627)
Q Consensus 134 ~g~~~~~~~~~r~~ig~v~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~-----~~gG 206 (627)
+..|-+||+.-|+. .|-..-|..|.|.-.. ..+. +.+...|-.+||...+++ ++||
T Consensus 646 --------KnhrL~iG~FdQh~~E~L~~Eetp~EyLqr~F-----Nlpy----q~ARK~LG~fGL~sHAHTikikdLSGG 708 (807)
T KOG0066|consen 646 --------KNHRLRIGWFDQHANEALNGEETPVEYLQRKF-----NLPY----QEARKQLGTFGLASHAHTIKIKDLSGG 708 (807)
T ss_pred --------ccceeeeechhhhhHHhhccccCHHHHHHHhc-----CCCh----HHHHHHhhhhhhhhccceEeeeecCCc
Confidence 22345699988873 4555567777775322 2232 345677888999876654 4699
Q ss_pred cccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEe-e
Q 006897 207 EENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVH-Y 267 (627)
Q Consensus 207 e~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~-~ 267 (627)
|+-| ||++||..+...+-+.|.+. .-.|||+|||-.. +.+.-..++|+.+-.|-+ .
T Consensus 709 QKaRValaeLal~~PDvlILDEPTNNLDIESIDALaEAIney----~GgVi~VsHDeRL-i~eT~C~LwVvE~Q~i~eId 783 (807)
T KOG0066|consen 709 QKARVALAELALGGPDVLILDEPTNNLDIESIDALAEAINEY----NGGVIMVSHDERL-IVETDCNLWVVENQGIDEID 783 (807)
T ss_pred chHHHHHHHHhcCCCCEEEecCCCCCcchhhHHHHHHHHHhc----cCcEEEEecccce-eeecCceEEEEccCChhhcc
Confidence 9987 99999999999999999876 3379999999874 555444667776644432 4
Q ss_pred CCHHHH
Q 006897 268 GSLELL 273 (627)
Q Consensus 268 G~~~~~ 273 (627)
|.-++.
T Consensus 784 GdFeDY 789 (807)
T KOG0066|consen 784 GDFEDY 789 (807)
T ss_pred ccHHHH
Confidence 555544
|
|
| >cd03283 ABC_MutS-like MutS-like homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.2e-15 Score=147.94 Aligned_cols=135 Identities=16% Similarity=0.206 Sum_probs=96.1
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCccCCChhhhcccEEEEccCCCCCCCCCHH
Q 006897 85 HILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKKPAQLRKICGFVAQEDNLLPLLTVK 164 (627)
Q Consensus 85 ~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~~~~~~~~r~~ig~v~Q~~~l~~~lTV~ 164 (627)
.+++|++++. |++++|+||||||||||+|+|+|...- ...|.++.. -.+++|.+.+++.+|+.
T Consensus 15 ~v~n~i~l~~--g~~~~ltGpNg~GKSTllr~i~~~~~l--------~~~G~~v~a-------~~~~~q~~~l~~~~~~~ 77 (199)
T cd03283 15 RVANDIDMEK--KNGILITGSNMSGKSTFLRTIGVNVIL--------AQAGAPVCA-------SSFELPPVKIFTSIRVS 77 (199)
T ss_pred eecceEEEcC--CcEEEEECCCCCChHHHHHHHHHHHHH--------HHcCCEEec-------CccCcccceEEEeccch
Confidence 4788887775 799999999999999999999876531 123333211 13667877889999999
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccCCcCCccccCCCCCCCHHHHHHHH-HHHHHHHHcCCCEEEEEcc
Q 006897 165 ETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAGSFVGDEENRGISGLDSTSALQVI-ELLASMAKAKQRTVVLSIH 243 (627)
Q Consensus 165 e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~gGe~qrPtsgLD~~~~~~i~-~~L~~l~~~~g~Tii~~tH 243 (627)
||+.++... ...+. +++.++++.+++.+ ..-++- ..|++|+|+..+..+. .+++++.+ .|.|+|++||
T Consensus 78 d~l~~~~s~-----~~~e~-~~~~~iL~~~~~~~-p~llll---DEp~~glD~~~~~~l~~~ll~~l~~-~~~tiiivTH 146 (199)
T cd03283 78 DDLRDGISY-----FYAEL-RRLKEIVEKAKKGE-PVLFLL---DEIFKGTNSRERQAASAAVLKFLKN-KNTIGIISTH 146 (199)
T ss_pred hccccccCh-----HHHHH-HHHHHHHHhccCCC-CeEEEE---ecccCCCCHHHHHHHHHHHHHHHHH-CCCEEEEEcC
Confidence 999875311 12333 67899999888510 000001 2299999999998775 46888865 5899999999
Q ss_pred CccH
Q 006897 244 QPSY 247 (627)
Q Consensus 244 ~~~~ 247 (627)
+++.
T Consensus 147 ~~~~ 150 (199)
T cd03283 147 DLEL 150 (199)
T ss_pred cHHH
Confidence 9873
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid |
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.1e-14 Score=152.58 Aligned_cols=168 Identities=17% Similarity=0.219 Sum_probs=126.1
Q ss_pred ceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEEC
Q 006897 55 CKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVN 134 (627)
Q Consensus 55 ~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~ 134 (627)
..+++.++++.|++ --|+-=..+|..||+++++||||-||||+.++|+|.++|++ |+
T Consensus 341 ~lv~y~~~~k~~g~----------------F~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPde---g~---- 397 (591)
T COG1245 341 TLVEYPDLKKTYGD----------------FKLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDE---GS---- 397 (591)
T ss_pred eeeecchheeecCc----------------eEEEecCCeeecceEEEEECCCCcchHHHHHHHhccccCCC---CC----
Confidence 35667777777631 13555567788889999999999999999999999999975 54
Q ss_pred CccCCChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccC----CcCCccccC
Q 006897 135 CHQIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAG----SFVGDEENR 210 (627)
Q Consensus 135 g~~~~~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~----~~~gGe~qr 210 (627)
.. .-+++|=||--.--...||.+.|.-....... ..---.++++-+.|++..+ .++|||.||
T Consensus 398 ~~--------~~~vSyKPQyI~~~~~gtV~~~l~~~~~~~~~------~s~~~~ei~~pl~l~~i~e~~v~~LSGGELQR 463 (591)
T COG1245 398 EE--------DLKVSYKPQYISPDYDGTVEDLLRSAIRSAFG------SSYFKTEIVKPLNLEDLLERPVDELSGGELQR 463 (591)
T ss_pred Cc--------cceEeecceeecCCCCCcHHHHHHHhhhhhcc------cchhHHhhcCccchHHHHhcccccCCchhHHH
Confidence 11 12478889974433456999988755422110 1112345667777766554 556999999
Q ss_pred ------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeec
Q 006897 211 ------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILS 260 (627)
Q Consensus 211 ------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~ 260 (627)
|.+-||...+..+-+.|+++....++|.+++.||+-. +--++||+++.+
T Consensus 464 vaIaa~L~reADlYllDEPSA~LDvEqR~~vakvIRR~~e~~~kta~vVdHDi~~-~dyvsDr~ivF~ 530 (591)
T COG1245 464 VAIAAALSREADLYLLDEPSAYLDVEQRIIVAKVIRRFIENNEKTALVVDHDIYM-IDYVSDRLIVFE 530 (591)
T ss_pred HHHHHHhccccCEEEecCchhhccHHHHHHHHHHHHHHHhhcCceEEEEecceeh-hhhhhceEEEEe
Confidence 9999999999999999999999899999999999984 666789998885
|
|
| >KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.57 E-value=9.7e-15 Score=155.94 Aligned_cols=197 Identities=20% Similarity=0.296 Sum_probs=125.9
Q ss_pred ceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEEC
Q 006897 55 CKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVN 134 (627)
Q Consensus 55 ~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~ 134 (627)
..++++|+++.|. ++.+++|++|++.+|+.+||+|+|||||||+|++|+|...|.... =.++..
T Consensus 74 ~dvk~~sls~s~~---------------g~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~-~d~y~l 137 (614)
T KOG0927|consen 74 RDVKIESLSLSFH---------------GVELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEH-IDFYLL 137 (614)
T ss_pred ccceeeeeeeccC---------------CceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcc-cchhhh
Confidence 3589999999983 457999999999999999999999999999999999998875322 222222
Q ss_pred CccCCC-h-hhh----------cccEEEEccCCCCC-CCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCc-cc-
Q 006897 135 CHQIKK-P-AQL----------RKICGFVAQEDNLL-PLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLT-HV- 199 (627)
Q Consensus 135 g~~~~~-~-~~~----------r~~ig~v~Q~~~l~-~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~- 199 (627)
.+++.. . ..+ ++++.|.-.+-... +. --.|.+.- ...++..+..+..+.++-++|..+|-. +.
T Consensus 138 s~e~~ps~~~av~~v~~~~~~e~~rle~~~E~l~~~~d~-~~~~~l~~-~~~r~~~~d~~~~~~k~~~il~glgf~~~m~ 215 (614)
T KOG0927|consen 138 SREIEPSEKQAVQAVVMETDHERKRLEYLAEDLAQACDD-KEKDELDE-LYERLDEMDNDTFEAKAAKILHGLGFLSEMQ 215 (614)
T ss_pred cccCCCchHHHHHHHhhhhHHHHHHHHHHHHHHHhhccc-hhhhHHHH-HHHHHHhhCchhHHHHHHHHHHhcCCCHhHH
Confidence 222211 0 001 11111110000000 00 00000000 000111122334455666666666643 22
Q ss_pred ---cCCcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhhee
Q 006897 200 ---AGSFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLI 258 (627)
Q Consensus 200 ---~~~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~v 258 (627)
...++||++.| ||++||..+..-+-+.|.+.- ..++++++|.-+. +-.+|.+|+-
T Consensus 216 ~k~~~~~SgGwrmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d---~~~lVi~sh~QDf-ln~vCT~Ii~ 291 (614)
T KOG0927|consen 216 DKKVKDLSGGWRMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYD---RIILVIVSHSQDF-LNGVCTNIIH 291 (614)
T ss_pred HHHhhccCchHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhcc---CceEEEEecchhh-hhhHhhhhhe
Confidence 23456999887 999999999999999998752 1289999999885 8899999999
Q ss_pred ecCCe-EEeeCCHHHH
Q 006897 259 LSRGS-VVHYGSLELL 273 (627)
Q Consensus 259 L~~G~-iv~~G~~~~~ 273 (627)
|++++ +.|.|+.++.
T Consensus 292 l~~kkl~~y~Gnydqy 307 (614)
T KOG0927|consen 292 LDNKKLIYYEGNYDQY 307 (614)
T ss_pred ecccceeeecCCHHHH
Confidence 99999 5677887754
|
|
| >TIGR01247 drrB daunorubicin resistance ABC transporter membrane protein | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.9e-12 Score=130.58 Aligned_cols=226 Identities=12% Similarity=0.121 Sum_probs=162.7
Q ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhccCC-CC--hhhH----HHHHHHHHHHHHHHHHHHHHHHhhHHHhhH-H
Q 006897 352 RFWKIIYRTKQLFLARTMQALVGGFGLGSVYVRVR-KD--EAGV----AERLGLFAFSLSFLLSSTVEALPIYLQERR-V 423 (627)
Q Consensus 352 R~~~~~~Rd~~~~~~r~~~~~~~~l~~G~~f~~~~-~~--~~~~----~~~~g~~ff~~~~~~~~~~~~i~~~~~er~-v 423 (627)
|+++...|||..+..-+++.++..+++|.++-+.- .+ ..+. .--.|.+.+.+...+.. ... ....||. -
T Consensus 1 re~~~~~r~~~~~~~~l~~Pl~~~~~~~~~~~~~~~~~~~~~g~~y~~fl~~G~~~~~~~~~~~~--~~~-~~~~~~~~g 77 (236)
T TIGR01247 1 RELKRFIRSRSRIVGSILNPLLWLIFFGKGWSGAFRFPMIFGGVDYMTYLVPGIVAMTVFNMSFF--SGI-SVIWDRQFG 77 (236)
T ss_pred CchHHHHHhhHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCcHHHHHHHHHHHHHHHHHHHH--hhh-HHHHHHHhC
Confidence 67888999999999999999999999998875531 11 1111 11123333222222211 112 2223333 2
Q ss_pred HHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHH
Q 006897 424 LMKEASREAYRISSYLIANTIVFLPFLFVVSLLFAIPVYWIVGLNPSIEAFVFFIFVVWLIVLMASSLVLFLSAISPDFI 503 (627)
Q Consensus 424 ~~rE~~~~~Y~~~~y~la~~l~~lp~~~~~~~~f~~i~Y~~~gl~~~~~~f~~f~~~~~l~~~~~~s~~~~i~~~~~~~~ 503 (627)
+.++....=.+...|+++|.+.+++..++..+++.++.+++.+++.. .++.+++..++..++..++|.++++..+|.+
T Consensus 78 ~~~~~~~~P~~~~~~~l~~~l~~~~~~~~~~~i~~~i~~~~~~~~~~--~~~~~~~~~~l~~~~~~~lg~~l~~~~~~~~ 155 (236)
T TIGR01247 78 FLKEILVAPASRVEMIVGRILGGSTVAMIQGAIILALSFIVAILKPS--GVIPTLVLAFIVGVALSGLGVAIAARMDSME 155 (236)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh--hHHHHHHHHHHHHHHHHHHHHHHHHHhCCHH
Confidence 33333333446789999999999999999999999999988776543 4555555666677788999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhccccCCCCCcchhhhhhhhchhHHHHHHHHHHHhCCCCccccccccCCCCCCCCCcccccchH
Q 006897 504 SGNSLICTVLGAFFLFSGYFIPKEYIPKYWIFMYYISLYRYPLDSLLTNEYWSARGECFSWQKYNNVDGDHFSKCLLTGN 583 (627)
Q Consensus 504 ~a~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~W~~yiSp~~Y~~~~l~~nef~~~~~~C~~~~~~~~~~~~~~~~c~~~G~ 583 (627)
.++.+.+++..+++.+||.+.|.+.+|.|++|+.+++|++|+.|++-..-. +..
T Consensus 156 ~~~~i~~~~~~~l~~lsG~~~P~~~~P~~~~~i~~~~P~~~~~~~~r~~~~-~~~------------------------- 209 (236)
T TIGR01247 156 GFQIIMSMLMLPMFFLSGAFYPITTMPAWMQGLAKINPLTYAVDGARYYLA-GVS------------------------- 209 (236)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCHHhCHHHHHHHHHHCcHHHHHHHHHHHHh-CCC-------------------------
Confidence 999999999999999999999999999999999999999999998654322 211
Q ss_pred HHHhhcCCCCCCchHHHHHHHHHHHHHHHHHHH
Q 006897 584 DVLKSRGLEKDTRWVNVGVMLAFFLFYRVLCWI 616 (627)
Q Consensus 584 ~~L~~~~~~~~~~w~~~~il~~~~~~~~~l~~~ 616 (627)
...+.|.++++++++.+.+.+++..
T Consensus 210 --------~~~~~~~~~~~l~~~~~~~~~l~~~ 234 (236)
T TIGR01247 210 --------PTFPLEQDLLVLTLLAVIFVGIAAV 234 (236)
T ss_pred --------cccchHHHHHHHHHHHHHHHHHHHH
Confidence 0123456788999998888877754
|
This model describes daunorubicin resistance ABC transporter, membrane associated protein in bacteria and archaea. The protein associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.8e-14 Score=140.08 Aligned_cols=153 Identities=14% Similarity=0.114 Sum_probs=102.3
Q ss_pred eeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCc---cCCChhhhcccEEEEccCCCCCCCCCH
Q 006897 87 LKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCH---QIKKPAQLRKICGFVAQEDNLLPLLTV 163 (627)
Q Consensus 87 L~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~---~~~~~~~~r~~ig~v~Q~~~l~~~lTV 163 (627)
++++++++.+| +.+|+||||||||||+.+|...+.... . ....|. ++.....-...+.+++|+..+++
T Consensus 12 ~~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l~~~~---~-~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~---- 82 (198)
T cd03276 12 HRHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGLGGKA---S-DTNRGSSLKDLIKDGESSAKITVTLKNQGLDA---- 82 (198)
T ss_pred eeeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHhcCCc---c-cccccccHHHHhhCCCCeEEEEEEEEcCCccC----
Confidence 57788888888 889999999999999999974432211 0 001121 11111112345888888876554
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcC-CccccCCcCCccccC----------------------CCCCCCHHHH
Q 006897 164 KETLMFSANFRLKGMSHKEKEDRVESLMDELG-LTHVAGSFVGDEENR----------------------GISGLDSTSA 220 (627)
Q Consensus 164 ~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lg-L~~~~~~~~gGe~qr----------------------PtsgLD~~~~ 220 (627)
| . .....+++++++++.-. .+.....+++||+|| |++|||+..+
T Consensus 83 --~-------~----~~~~~~~~~~~~l~~~~~~~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~~~ 149 (198)
T cd03276 83 --N-------P----LCVLSQDMARSFLTSNKAAVRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMVNR 149 (198)
T ss_pred --C-------c----CCHHHHHHHHHHhccccccCCcccccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHHHH
Confidence 1 0 01122355667776511 122334566888886 8999999999
Q ss_pred HHHHHHHHHHHHc--CCCEEEEEccCccHHHHHHhhhheeecCCe
Q 006897 221 LQVIELLASMAKA--KQRTVVLSIHQPSYRILQYISKFLILSRGS 263 (627)
Q Consensus 221 ~~i~~~L~~l~~~--~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~ 263 (627)
..+.+.|+++.++ .+.|||+++|+++ ++.++ |+|.+|..++
T Consensus 150 ~~~~~~l~~~~~~~~~~~~iii~th~~~-~i~~~-d~v~~~~~~~ 192 (198)
T cd03276 150 KISTDLLVKEAKKQPGRQFIFITPQDIS-GLASS-DDVKVFRMKD 192 (198)
T ss_pred HHHHHHHHHHHhcCCCcEEEEEECCccc-ccccc-cceeEEEecC
Confidence 9999999998654 2468999999998 46654 9999998754
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.51 E-value=6.6e-15 Score=149.71 Aligned_cols=155 Identities=13% Similarity=0.178 Sum_probs=97.2
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCcc-CCC--------hhhhcccEEEEccCCCC-CCCCCHH
Q 006897 95 RDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQ-IKK--------PAQLRKICGFVAQEDNL-LPLLTVK 164 (627)
Q Consensus 95 ~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~-~~~--------~~~~r~~ig~v~Q~~~l-~~~lTV~ 164 (627)
.++ +++|+||||||||||+++|++.+.+.. |++...+.+ +.. .....-.+.|..|++.. .-..++.
T Consensus 21 ~~~-~~~i~G~NGsGKStll~ai~~~l~~~~---~~~r~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~~~~~~~~~~ 96 (247)
T cd03275 21 FDR-FTCIIGPNGSGKSNLMDAISFVLGEKS---SHLRSKNLKDLIYRARVGKPDSNSAYVTAVYEDDDGEEKTFRRIIT 96 (247)
T ss_pred CCC-eEEEECCCCCCHHHHHHHHHHHhCCCc---ccccccchhhhcccCccccCCCceEEEEEEEEcCCCcEEEEEEEEE
Confidence 344 999999999999999999999886532 554433211 100 01122223444443221 1111222
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccc--------------------------cCCcCCccccC--------
Q 006897 165 ETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHV--------------------------AGSFVGDEENR-------- 210 (627)
Q Consensus 165 e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~--------------------------~~~~~gGe~qr-------- 210 (627)
+... ..+..+ +....+.++++++.+|++.. ...++|||+||
T Consensus 97 ~~~~---~~~ing--k~~s~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~~~~~~~~~~LS~G~k~rl~la~al~ 171 (247)
T cd03275 97 GGSS---SYRING--KVVSLKEYNEELEKINILVKARNFLVFQGDVESIASKNPPGKRFRDMDNLSGGEKTMAALALLFA 171 (247)
T ss_pred CCce---EEEECC--EEecHHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCcchhhhhHHHcCHHHHHHHHHHHHHH
Confidence 2110 001111 11223456788888888521 03345787765
Q ss_pred --------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecC
Q 006897 211 --------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSR 261 (627)
Q Consensus 211 --------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~ 261 (627)
|++|||+..+..+.+.|+++++ .|.|+|++||+++ +.+.||++++|.+
T Consensus 172 ~~~~~~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~-~g~~vi~isH~~~--~~~~~d~i~~~~~ 233 (247)
T cd03275 172 IHSYQPAPFFVLDEVDAALDNTNVGKVASYIREQAG-PNFQFIVISLKEE--FFSKADALVGVYR 233 (247)
T ss_pred HhccCCCCEEEEecccccCCHHHHHHHHHHHHHhcc-CCcEEEEEECCHH--HHhhCCeEEEEEe
Confidence 8999999999999999999975 4899999999965 5789999999864
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.49 E-value=9.8e-14 Score=143.75 Aligned_cols=189 Identities=20% Similarity=0.361 Sum_probs=129.1
Q ss_pred EEEEeEEEEEccCcccc--c--------cc-ccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC-
Q 006897 57 VTVRNLSYAIQPNTSIL--S--------HL-LHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQ- 124 (627)
Q Consensus 57 l~~~nls~~y~~~~~~~--~--------~~-~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~- 124 (627)
+.++|+++.+...-... + .| -........+|+|+|+++++|++++|+|+|||||||||++|+|.....
T Consensus 358 ~~~~~v~k~faS~ld~~~lp~e~~~IleSFGv~~r~ieryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ 437 (593)
T COG2401 358 IKFKNVTKTFASELDIKGLPNEFQDILESFGVRQRVIERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRG 437 (593)
T ss_pred cccceeeeeeeeeeecccCChHHHHHHHHhcchheeeeeeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhccc
Confidence 67888888874321100 0 01 112223457999999999999999999999999999999999865421
Q ss_pred ----CCccceEEECCccCCChhhhcccEEEEccCC-CCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccc
Q 006897 125 ----DFDPRSITVNCHQIKKPAQLRKICGFVAQED-NLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHV 199 (627)
Q Consensus 125 ----~~~~G~i~i~g~~~~~~~~~r~~ig~v~Q~~-~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~ 199 (627)
..++|.|.+--.. ..+.+|-+. .-|..-|+.|.+.-- .+ +-....++|+..||.+-
T Consensus 438 ee~y~p~sg~v~vp~nt---------~~a~iPge~Ep~f~~~tilehl~s~-----tG-----D~~~AveILnraGlsDA 498 (593)
T COG2401 438 EEKYRPDSGKVEVPKNT---------VSALIPGEYEPEFGEVTILEHLRSK-----TG-----DLNAAVEILNRAGLSDA 498 (593)
T ss_pred ccccCCCCCceeccccc---------hhhccCcccccccCchhHHHHHhhc-----cC-----chhHHHHHHHhhccchh
Confidence 1234666542111 234566542 223355777766421 11 12346778999999752
Q ss_pred ------cCCcCCccccC----------C--------CCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHH-hh
Q 006897 200 ------AGSFVGDEENR----------G--------ISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQY-IS 254 (627)
Q Consensus 200 ------~~~~~gGe~qr----------P--------tsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~-~D 254 (627)
...++.||+.| | .+.||+.++..+.+-|.+++++.|.|++++||+++. +-.+ -|
T Consensus 499 vlyRr~f~ELStGQKeR~KLAkllaerpn~~~iDEF~AhLD~~TA~rVArkiselaRe~giTlivvThrpEv-~~AL~PD 577 (593)
T COG2401 499 VLYRRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREAGITLIVVTHRPEV-GNALRPD 577 (593)
T ss_pred hhhhccHhhcCcchHHHHHHHHHHhcCCCcEEhhhhhhhcCHHHHHHHHHHHHHHHHHhCCeEEEEecCHHH-HhccCCc
Confidence 24566888877 1 378999999999999999999999999999999974 5555 58
Q ss_pred hheeecCCeEE
Q 006897 255 KFLILSRGSVV 265 (627)
Q Consensus 255 ~i~vL~~G~iv 265 (627)
+++.+.-|+..
T Consensus 578 ~li~vgYg~v~ 588 (593)
T COG2401 578 TLILVGYGKVP 588 (593)
T ss_pred eeEEeeccccc
Confidence 88887766553
|
|
| >KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.1e-13 Score=145.01 Aligned_cols=186 Identities=19% Similarity=0.305 Sum_probs=141.1
Q ss_pred CCcceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceE
Q 006897 52 KTTCKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSI 131 (627)
Q Consensus 52 ~~~~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i 131 (627)
..++.+++.+|++.|+.+ .. +++.+++++++.-+..+++|+||+||||++|++.|-+.|.. |.+
T Consensus 358 ~~~p~l~i~~V~f~y~p~------------~y-~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~r---gi~ 421 (582)
T KOG0062|consen 358 LSPPNLRISYVAFEYTPS------------EY-QWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTR---GIV 421 (582)
T ss_pred CCCCeeEEEeeeccCCCc------------ch-hhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCccc---cee
Confidence 345579999999999533 22 68999999999999999999999999999999999887753 666
Q ss_pred EECCccCCChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCcc-c----cCCcCCc
Q 006897 132 TVNCHQIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTH-V----AGSFVGD 206 (627)
Q Consensus 132 ~i~g~~~~~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~----~~~~~gG 206 (627)
.+.+ |.+++|-.|...-+-.+.|-+- .+-.+.+ ++. .++.+++-+..+||+. . ...++||
T Consensus 422 ~~~~---------r~ri~~f~Qhhvd~l~~~v~~v-d~~~~~~-pG~----~~ee~r~hl~~~Gl~g~la~~si~~LSGG 486 (582)
T KOG0062|consen 422 GRHP---------RLRIKYFAQHHVDFLDKNVNAV-DFMEKSF-PGK----TEEEIRRHLGSFGLSGELALQSIASLSGG 486 (582)
T ss_pred eecc---------cceecchhHhhhhHHHHHhHHH-HHHHHhC-CCC----CHHHHHHHHHhcCCCchhhhccccccCCc
Confidence 5432 5679999997543333444432 2322222 333 3455777889999973 2 2456799
Q ss_pred cccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEe-e
Q 006897 207 EENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVH-Y 267 (627)
Q Consensus 207 e~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~-~ 267 (627)
|+-| ||+.||..+-..+.+.|+.+ .| .||+||||.+. +...|+.+++.++|++.- .
T Consensus 487 QKsrvafA~~~~~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F---~G-GVv~VSHd~~f-i~~~c~E~Wvve~g~vt~ie 561 (582)
T KOG0062|consen 487 QKSRVAFAACTWNNPHLLVLDEPTNHLDRDSLGALAKALKNF---NG-GVVLVSHDEEF-ISSLCKELWVVEDGKVTPIE 561 (582)
T ss_pred chhHHHHHHHhcCCCcEEEecCCCccccHHHHHHHHHHHHhc---CC-cEEEEECcHHH-HhhcCceeEEEcCCcEEeee
Confidence 9977 99999999999999999886 23 69999999986 889999999999999865 4
Q ss_pred CCHHHH
Q 006897 268 GSLELL 273 (627)
Q Consensus 268 G~~~~~ 273 (627)
|...+-
T Consensus 562 g~~~~y 567 (582)
T KOG0062|consen 562 GGIDKY 567 (582)
T ss_pred ccHHHH
Confidence 555443
|
|
| >cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis | Back alignment and domain information |
|---|
Probab=99.48 E-value=4.6e-14 Score=123.10 Aligned_cols=75 Identities=15% Similarity=0.145 Sum_probs=62.6
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCccCCC--hhhhcccEEEEccCCCCCCCC
Q 006897 84 LHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKK--PAQLRKICGFVAQEDNLLPLL 161 (627)
Q Consensus 84 ~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~~~~--~~~~r~~ig~v~Q~~~l~~~l 161 (627)
+.+|+++++++++||+++|+||||||||||++++. .|++.++|.++.. ..+.++.+++++|+ ++. .
T Consensus 2 ~~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~---------~G~i~~~g~di~~~~~~~~~~~~~~~~q~--lf~-~ 69 (107)
T cd00820 2 TTSLHGVLVDVYGKVGVLITGDSGIGKTELALELI---------KRKHRLVGDDNVEIREDSKDELIGRNPEL--GLE-I 69 (107)
T ss_pred ceEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh---------CCeEEEeeEeHHHhhhhhcCCEEEEechh--cch-h
Confidence 35899999999999999999999999999999986 2889999988632 34456678888887 554 4
Q ss_pred CHHHHHHHH
Q 006897 162 TVKETLMFS 170 (627)
Q Consensus 162 TV~e~l~~~ 170 (627)
|++|||.++
T Consensus 70 ti~~Ni~~~ 78 (107)
T cd00820 70 RLRLNIFLI 78 (107)
T ss_pred hHHhhceee
Confidence 999999884
|
It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural |
| >KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.4e-13 Score=146.28 Aligned_cols=167 Identities=19% Similarity=0.360 Sum_probs=119.3
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
.|.++|+-.--+ ....++..++|+|++|--+.|+||||||||+|.|+|.|+.+-.. |...+
T Consensus 481 gI~lenIpvItP--------------~~~vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPvy~---g~L~~-- 541 (728)
T KOG0064|consen 481 GIILENIPVITP--------------AGDVLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPVYN---GLLSI-- 541 (728)
T ss_pred ceEEecCceecc--------------CcceeecceeEEecCCceEEEECCCCccHHHHHHHHhccCcccC---Ceeec--
Confidence 578888876543 23458999999999999999999999999999999999988642 55432
Q ss_pred ccCCChhhhcccEEEEccCCCCCCCCCHHHHHHHHH---HhcCCCCCHHHHHHHHHHHHHHcCCcc-------------c
Q 006897 136 HQIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSA---NFRLKGMSHKEKEDRVESLMDELGLTH-------------V 199 (627)
Q Consensus 136 ~~~~~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~---~~~~~~~~~~~~~~~v~~~l~~lgL~~-------------~ 199 (627)
+ -+.++-|+||.|..-. -|.+|.+-|+- .++.++.. ++..+.+|+.+.|++ .
T Consensus 542 -----P--~~~~mFYIPQRPYms~-gtlRDQIIYPdS~e~~~~kg~~----d~dL~~iL~~v~L~~i~qr~~g~da~~dW 609 (728)
T KOG0064|consen 542 -----P--RPNNIFYIPQRPYMSG-GTLRDQIIYPDSSEQMKRKGYT----DQDLEAILDIVHLEHILQREGGWDAVRDW 609 (728)
T ss_pred -----C--CCcceEeccCCCccCc-CcccceeecCCcHHHHHhcCCC----HHHHHHHHHHhhHHHHHHhccChhhhccH
Confidence 1 1234899999987663 48888887642 11112222 234566666666654 3
Q ss_pred cCCcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheee
Q 006897 200 AGSFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLIL 259 (627)
Q Consensus 200 ~~~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL 259 (627)
.|.++|||+|| -||+..+.....+.+..+ ..|.+.|-+||+|+ +.++-..++-.
T Consensus 610 kd~LsgGekQR~~mARm~yHrPkyalLDEcTsAvsidvE~~i~~~ak----~~gi~llsithrps--lwk~h~~ll~~ 681 (728)
T KOG0064|consen 610 KDVLSGGEKQRMGMARMFYHRPKYALLDECTSAVSIDVEGKIFQAAK----DAGISLLSITHRPS--LWKYHTHLLEF 681 (728)
T ss_pred HhhccchHHHHHHHHHHHhcCcchhhhhhhhcccccchHHHHHHHHH----hcCceEEEeecCcc--HHHHHHHHHhc
Confidence 45667999999 367766666666666654 46999999999998 57776666555
|
|
| >cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes | Back alignment and domain information |
|---|
Probab=99.46 E-value=7.5e-13 Score=130.27 Aligned_cols=145 Identities=14% Similarity=0.182 Sum_probs=92.1
Q ss_pred eeceEEEEeCCe-EEEEECCCCCcHHHHHHHHH--------cCCCCCCCccceEEECCccCCChhhhcccEEEEccCCCC
Q 006897 87 LKSVSFEARDSE-ILAVVGPSGTGKSSLLRIIS--------GRVRDQDFDPRSITVNCHQIKKPAQLRKICGFVAQEDNL 157 (627)
Q Consensus 87 L~~vsl~i~~Ge-~~aIiGpnGsGKSTLl~~L~--------Gl~~~~~~~~G~i~i~g~~~~~~~~~r~~ig~v~Q~~~l 157 (627)
.-++|+++.+|+ +++|+||||||||||||+|+ |...|.. .. ..++|..|....
T Consensus 17 ~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~~---~~---------------~~~~~~~~~~~~ 78 (200)
T cd03280 17 VVPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPAA---EG---------------SSLPVFENIFAD 78 (200)
T ss_pred eEcceEEECCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCcccc---cc---------------ccCcCccEEEEe
Confidence 568999999995 89999999999999999998 4433321 00 123444444222
Q ss_pred CC-CCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccCCcCCccccCCCCCCCHHHHHHHH-HHHHHHHHcCC
Q 006897 158 LP-LLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAGSFVGDEENRGISGLDSTSALQVI-ELLASMAKAKQ 235 (627)
Q Consensus 158 ~~-~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~gGe~qrPtsgLD~~~~~~i~-~~L~~l~~~~g 235 (627)
+. ..++.+++.- .+ .+.+ +...++..+ . ...-.+-.| |++|||+..+..+. ..++++.+ .|
T Consensus 79 lg~~~~l~~~~s~--------fs-~g~~-~~~~i~~~~--~-~p~llllDE---p~~glD~~~~~~i~~~~l~~l~~-~~ 141 (200)
T cd03280 79 IGDEQSIEQSLST--------FS-SHMK-NIARILQHA--D-PDSLVLLDE---LGSGTDPVEGAALAIAILEELLE-RG 141 (200)
T ss_pred cCchhhhhcCcch--------HH-HHHH-HHHHHHHhC--C-CCcEEEEcC---CCCCCCHHHHHHHHHHHHHHHHh-cC
Confidence 11 1122222211 01 1222 223333332 1 011111233 99999999999996 46777764 58
Q ss_pred CEEEEEccCccHHHHHHhhhheeecCCeEEeeC
Q 006897 236 RTVVLSIHQPSYRILQYISKFLILSRGSVVHYG 268 (627)
Q Consensus 236 ~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G 268 (627)
.|+|++||+. ++.++||++..|++|++.+++
T Consensus 142 ~~vi~~tH~~--~l~~~~d~~~~l~~g~l~~~~ 172 (200)
T cd03280 142 ALVIATTHYG--ELKAYAYKREGVENASMEFDP 172 (200)
T ss_pred CEEEEECCHH--HHHHHHhcCCCeEEEEEEEec
Confidence 9999999985 478999999999999998764
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a |
| >TIGR03062 pip_yhgE_Cterm YhgE/Pip C-terminal domain | Back alignment and domain information |
|---|
Probab=99.44 E-value=3.4e-12 Score=126.23 Aligned_cols=151 Identities=17% Similarity=0.128 Sum_probs=124.3
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006897 434 RISSYLIANTIVFLPFLFVVSLLFAIPVYWIVGLNPSIEAFVFFIFVVWLIVLMASSLVLFLSAISPDFISGNSLICTVL 513 (627)
Q Consensus 434 ~~~~y~la~~l~~lp~~~~~~~~f~~i~Y~~~gl~~~~~~f~~f~~~~~l~~~~~~s~~~~i~~~~~~~~~a~~~~~~~~ 513 (627)
+.+.++++|++..++..+++.+++..+.|++.|++.. ++..+++.+++..++..+++.+++++.++...+. ..+.+
T Consensus 58 ~~~~~~~~k~~~~~~~~~~~~~~~~~i~~~~~g~~~~--~~~~~~l~~~l~~~~~~~lg~~l~~~~~~~~~~~--~~~~~ 133 (208)
T TIGR03062 58 RSWRIALAKLLPGGLIGVLQAIILYGVLILGLGLDPA--HPPATFGFAILTSLTFMAIIQFLVALFGNVGRFL--ALVLL 133 (208)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccC--CHHHHHHHHHHHHHHHHHHHHHHHHHhCcchHHH--HHHHH
Confidence 4567799999999999999999999999999999875 4667777888888999999999999999775444 33445
Q ss_pred HHHHHhhccccCCCCCcchhhhhhhhchhHHHHHHHHHHHhCCCCccccccccCCCCCCCCCcccccchHHHHhhcCCCC
Q 006897 514 GAFFLFSGYFIPKEYIPKYWIFMYYISLYRYPLDSLLTNEYWSARGECFSWQKYNNVDGDHFSKCLLTGNDVLKSRGLEK 593 (627)
Q Consensus 514 ~~~~lf~Gf~i~~~~ip~~~~W~~yiSp~~Y~~~~l~~nef~~~~~~C~~~~~~~~~~~~~~~~c~~~G~~~L~~~~~~~ 593 (627)
.+.++++|.+.|.+.+|.|++|+.|++|++|+.+++-...+.+. .
T Consensus 134 ~~~~~~sG~~~P~~~~P~~~~~i~~~~P~t~~~~~~r~~~~~~~-----------------------------------~ 178 (208)
T TIGR03062 134 VLQLGSSGGTFPIELLPAFFQAIHPFLPMTYSVNGLRQLISGGN-----------------------------------D 178 (208)
T ss_pred HHHHccCCCccchhhCHHHHHHhhhhCcHHHHHHHHHHHHhCCc-----------------------------------H
Confidence 56777899999999999999999999999999999976555321 1
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 006897 594 DTRWVNVGVMLAFFLFYRVLCWIILSRRAS 623 (627)
Q Consensus 594 ~~~w~~~~il~~~~~~~~~l~~~~L~~~~~ 623 (627)
...|.++++++++.+++.++++...|+|++
T Consensus 179 ~~~~~~~~~L~~~~~v~~~la~~~~~~~~~ 208 (208)
T TIGR03062 179 GTLWQAVAVLLLILVVFLALSLLSARRKRR 208 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Confidence 235778999999999999999888776543
|
This family contains the C-terminal domain of a family of multiple membrane-spanning proteins of Gram-positive bacteria. One member was shown to be a host protein essential for phage infection, so many members of this family are called "phage infection protein". A separate model, TIGR03061, represents the conserved N-terminal domain. The domains are separated by regions highly variable in both length and sequence, often containing extended heptad repeats as described in model TIGR03057. |
| >TIGR01291 nodJ ABC-2 type transporter, NodJ family | Back alignment and domain information |
|---|
Probab=99.44 E-value=6.5e-11 Score=120.84 Aligned_cols=236 Identities=14% Similarity=0.126 Sum_probs=161.3
Q ss_pred HHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHHHhhccCCCChhh--HHHHH--HHHHHHHHHHHHHHHHHH-hhHHH
Q 006897 346 IMVLCSRFWKIIYRT-KQLFLARTMQALVGGFGLGSVYVRVRKDEAG--VAERL--GLFAFSLSFLLSSTVEAL-PIYLQ 419 (627)
Q Consensus 346 ~~~l~~R~~~~~~Rd-~~~~~~r~~~~~~~~l~~G~~f~~~~~~~~~--~~~~~--g~~ff~~~~~~~~~~~~i-~~~~~ 419 (627)
...+.+|+++..+|+ |..+...+++.++.-+++|..+-....+..+ ..+-. |++.+++.+... .... ..+..
T Consensus 7 ~~~~~~R~~~~~~r~~~~~~~~~~~~P~~~l~~fg~~~~~~~~~~~g~~y~~f~~pg~l~~~~~~~~~--~~~~~~~~~~ 84 (253)
T TIGR01291 7 WAAVWRRNALAWKKVAAASVLGNLADPLIYLFGLGVGLGKMVGSVDGVSYAAFLAAGMVATSAMTAST--FETIYATFAR 84 (253)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH
Confidence 456679999999999 9999999999999888888886543211111 11111 322222221111 1111 12222
Q ss_pred --hhHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006897 420 --ERRVLMKEASREAYRISSYLIANTIVFLPFLFVVSLLFAIPVYWIVGLNPSIEAFVFFIFVVWLIVLMASSLVLFLSA 497 (627)
Q Consensus 420 --er~v~~rE~~~~~Y~~~~y~la~~l~~lp~~~~~~~~f~~i~Y~~~gl~~~~~~f~~f~~~~~l~~~~~~s~~~~i~~ 497 (627)
|+..+.|-+..-. +...+.++|++.+.-..++..++...+.++ .|..+. ......+..+++..++..++|+++++
T Consensus 85 ~r~~g~~~~l~~~Pv-~~~~~~~g~~~~~~~~~~~~~~ii~~~~~~-~g~~~~-~~~l~~~~~~ll~~l~~~~lg~~~a~ 161 (253)
T TIGR01291 85 MRVTRTWEAMLYTPI-TVGDIVLGEVAWAATKASLAGTIIGVVTAT-LGYIEW-WSLIYILPVIALTGLAFASLSMLVAA 161 (253)
T ss_pred HHHcccHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhhchh-hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2333333333333 788999999999887777777665555543 344443 23444445556677777899999999
Q ss_pred hcCCHHHHHHHHHHHHHHHHHhhccccCCCCCcchhhhhhhhchhHHHHHHHHHHHhCCCCccccccccCCCCCCCCCcc
Q 006897 498 ISPDFISGNSLICTVLGAFFLFSGYFIPKEYIPKYWIFMYYISLYRYPLDSLLTNEYWSARGECFSWQKYNNVDGDHFSK 577 (627)
Q Consensus 498 ~~~~~~~a~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~W~~yiSp~~Y~~~~l~~nef~~~~~~C~~~~~~~~~~~~~~~~ 577 (627)
+.++.+.+..+..+++.+++..||.+.|.+.+|.|++|+.+++|+.|+.|++-.. +.+..
T Consensus 162 ~~~~~~~~~~i~~~i~~pl~flSg~~~P~~~mP~~lq~i~~~nPlt~~v~~~R~~-~~g~~------------------- 221 (253)
T TIGR01291 162 LAPSYAYFAFYQSLVITPMLFLSGVVFPVFQLNDVIQGMTHFLPLAHSIDDIRPV-MLGGP------------------- 221 (253)
T ss_pred HhccHHHHHHHHHHHHHHHHHHHHHhcCHHhChHHHHHHHHHCcHHHHHHHHHHH-HhCCC-------------------
Confidence 9999999999999999999999999999999999999999999999999986443 22210
Q ss_pred cccchHHHHhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhh
Q 006897 578 CLLTGNDVLKSRGLEKDTRWVNVGVMLAFFLFYRVLCWIILSRR 621 (627)
Q Consensus 578 c~~~G~~~L~~~~~~~~~~w~~~~il~~~~~~~~~l~~~~L~~~ 621 (627)
..+.|.++++++++.+++.++++..+|+|
T Consensus 222 ---------------~~~~~~~~~~l~~~~vv~~~la~~~fr~~ 250 (253)
T TIGR01291 222 ---------------GTQVGLHLGALCLYAVVPFFISAALLRRR 250 (253)
T ss_pred ---------------cHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 01235678889999888888887776654
|
Nearly all members of this subfamily are NodJ which, together with NodI (TIGR01288), acts to export a variety of modified carbohydrate molecules as signals to plant hosts to establish root nodules. The seed alignment includes a highly divergent member from Azorhizobium caulinodans that is, nonetheless, associated with nodulation. This model is designated as subfamily in part because not all sequences derived from the last common ancestral sequence of Rhizobium sp. and Azorhizobium caulinodans NodJ are necessarily nodulation proteins. |
| >COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.43 E-value=8.2e-13 Score=147.14 Aligned_cols=105 Identities=25% Similarity=0.352 Sum_probs=85.1
Q ss_pred CCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCc-----cccCCcCCccccC---------------------CCC
Q 006897 160 LLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLT-----HVAGSFVGDEENR---------------------GIS 213 (627)
Q Consensus 160 ~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-----~~~~~~~gGe~qr---------------------Pts 213 (627)
.|||.|...|.... ..-.+..+.|..+||. .-+.+++|||.|| ||+
T Consensus 783 ~MTveEA~~FF~~~--------p~I~rkLqtL~dVGLgYi~LGQpatTLSGGEaQRvKLA~EL~k~~tg~TlYiLDEPTT 854 (935)
T COG0178 783 DMTVEEALEFFEAI--------PKIARKLQTLVDVGLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTT 854 (935)
T ss_pred hccHHHHHHHHhcc--------hHHHHHHHHHHHcCcceEecCCccccccchHHHHHHHHHHHhhccCCCeEEEeCCCCC
Confidence 46777777775421 1233445667778886 3467888999999 999
Q ss_pred CCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeec------CCeEEeeCCHHHHHH
Q 006897 214 GLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILS------RGSVVHYGSLELLEE 275 (627)
Q Consensus 214 gLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~------~G~iv~~G~~~~~~~ 275 (627)
||-....+++++.|.+|.+ .|.|||+|.|+++ +.+.||.|+=|- .|+|++.|+|+++.+
T Consensus 855 GLH~~Di~kLl~VL~rLvd-~GnTViVIEHNLd--VIk~AD~IIDLGPeGG~~GG~iva~GTPeeva~ 919 (935)
T COG0178 855 GLHFDDIKKLLEVLHRLVD-KGNTVIVIEHNLD--VIKTADWIIDLGPEGGDGGGEIVASGTPEEVAK 919 (935)
T ss_pred CCCHHHHHHHHHHHHHHHh-CCCEEEEEecccc--eEeecCEEEEcCCCCCCCCceEEEecCHHHHHh
Confidence 9999999999999999987 5999999999997 689999999883 579999999999865
|
|
| >TIGR00025 Mtu_efflux ABC transporter efflux protein, DrrB family | Back alignment and domain information |
|---|
Probab=99.41 E-value=6.9e-11 Score=119.02 Aligned_cols=222 Identities=15% Similarity=0.139 Sum_probs=145.3
Q ss_pred hcCHHHHHHHHHHHHHHHHHHHHhhccCCCChhhHHH-HHHHHHHHHHHHHHHHHHHHhhHHHhhH--HHHHHhcCCCCC
Q 006897 358 YRTKQLFLARTMQALVGGFGLGSVYVRVRKDEAGVAE-RLGLFAFSLSFLLSSTVEALPIYLQERR--VLMKEASREAYR 434 (627)
Q Consensus 358 ~Rd~~~~~~r~~~~~~~~l~~G~~f~~~~~~~~~~~~-~~g~~ff~~~~~~~~~~~~i~~~~~er~--v~~rE~~~~~Y~ 434 (627)
+|||.....-+.+.+++-++.+.+|-+.. +.+..+. ..|.+.+...+ ++....--....||. .+.|=+.. =.+
T Consensus 2 ~r~p~~~~~~~~~p~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~~~~~~i~~er~~G~l~rl~~~-P~~ 77 (232)
T TIGR00025 2 LRVGAQIILTMFIPITFMVGLNLLPGGSV-THNRGATFIPVLMALAAIS--TAFTGQAIAVARDRRYGALKRLGAT-PLP 77 (232)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHhcCCcc-CCcchhHhhHHHHHHHHHH--HHHHHHHHHHHHHHHhCHHHHHhcC-CCc
Confidence 68999888888888888777777775421 1122211 22222221111 111111122334443 34444433 347
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CHHHHHHHHHH
Q 006897 435 ISSYLIANTIVFLPFLFVVSLLFAIPVYWIVGLNPSIEAFVFFIFVVWLIVLMASSLVLFLSAISP---DFISGNSLICT 511 (627)
Q Consensus 435 ~~~y~la~~l~~lp~~~~~~~~f~~i~Y~~~gl~~~~~~f~~f~~~~~l~~~~~~s~~~~i~~~~~---~~~~a~~~~~~ 511 (627)
...|+++|++..++..++..+++. +++++.|++..... ...++.+.+....+.+++.+++++.+ +.+.+..+..+
T Consensus 78 ~~~~l~g~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~ 155 (232)
T TIGR00025 78 RLGILAGRSLAVVARVFLQTLILL-VIGFVLGFRFAGGA-LTALTLGAVIIALGTALFAALGLVAGGTLQAEIVLAVANL 155 (232)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhccCcCCch-HHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 899999999988888777655554 55667898876443 33344455555666777777777774 44555788888
Q ss_pred HHHHHHHhhccccCCCCCcchhhhhhhhchhHHHHHHHHHHHhCCCCccccccccCCCCCCCCCcccccchHHHHhhcCC
Q 006897 512 VLGAFFLFSGYFIPKEYIPKYWIFMYYISLYRYPLDSLLTNEYWSARGECFSWQKYNNVDGDHFSKCLLTGNDVLKSRGL 591 (627)
Q Consensus 512 ~~~~~~lf~Gf~i~~~~ip~~~~W~~yiSp~~Y~~~~l~~nef~~~~~~C~~~~~~~~~~~~~~~~c~~~G~~~L~~~~~ 591 (627)
+..+++++||.+.|.+.+|.|++|+.+++|++|+.+++-.. +.+. -
T Consensus 156 ~~~p~~~lSG~~~P~~~mP~~lq~i~~~~P~t~~~~~~r~~-~~~~---------------------------------~ 201 (232)
T TIGR00025 156 VWFIFALLSAGLVPLNLIPTWIKWFVRVQPSSYATEALRQA-ATVS---------------------------------V 201 (232)
T ss_pred HHHHHHHHhheeeecccccHHHHHHHHhCcHHHHHHHHHHH-HcCC---------------------------------C
Confidence 88999999999999999999999999999999999987442 2111 0
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHHh
Q 006897 592 EKDTRWVNVGVMLAFFLFYRVLCWIILS 619 (627)
Q Consensus 592 ~~~~~w~~~~il~~~~~~~~~l~~~~L~ 619 (627)
+....|.++++++++.+++..++...++
T Consensus 202 ~~~~~~~~~~~l~~~~~v~~~la~~~~~ 229 (232)
T TIGR00025 202 DTFGAVRDLVVVLAFWVALAALAAIRLR 229 (232)
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1233567888888888888777766554
|
This model represents a branch of a larger superfamily that also includes NodJ, a part of the NodIJ pair of nodulation-triggering signal efflux proteins. The members of this branch may all act in antibiotic resistance. |
| >PRK07721 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.9e-12 Score=140.73 Aligned_cols=169 Identities=18% Similarity=0.197 Sum_probs=114.5
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCccCCC----------hhhhcccEEEEcc
Q 006897 84 LHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKK----------PAQLRKICGFVAQ 153 (627)
Q Consensus 84 ~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~~~~----------~~~~r~~ig~v~Q 153 (627)
.++++++ +.+.+|++++|+|+||+|||||+++|+|..+++. |.|.+.|++-.+ ...+++.+.++.+
T Consensus 146 ~~vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~---gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~ 221 (438)
T PRK07721 146 VRAIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNTSADL---NVIALIGERGREVREFIERDLGPEGLKRSIVVVAT 221 (438)
T ss_pred hhhhhee-eeecCCcEEEEECCCCCCHHHHHHHHhcccCCCe---EEEEEEecCCccHHHHHHhhcChhhhcCeEEEEEC
Confidence 4689999 9999999999999999999999999999988753 888886544211 1235678999976
Q ss_pred CCCC--C------CCCCHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHHHcCCccccCCcCCccccCCCCCCCHHHHHHHH
Q 006897 154 EDNL--L------PLLTVKETLMFSANFRLKGM-SHKEKEDRVESLMDELGLTHVAGSFVGDEENRGISGLDSTSALQVI 224 (627)
Q Consensus 154 ~~~l--~------~~lTV~e~l~~~~~~~~~~~-~~~~~~~~v~~~l~~lgL~~~~~~~~gGe~qrPtsgLD~~~~~~i~ 224 (627)
.+.- . -.+|+.|.++- ..... ---+.-.+..++..++++. -||. -.++|+||.....+.
T Consensus 222 ~~~~~~~r~~~~~~a~~iAEyfr~----~g~~Vll~~Dsltr~A~A~rEisl~-------~ge~-P~~~G~dp~~~~~l~ 289 (438)
T PRK07721 222 SDQPALMRIKGAYTATAIAEYFRD----QGLNVMLMMDSVTRVAMAQREIGLA-------VGEP-PTTKGYTPSVFAILP 289 (438)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHH----CCCcEEEEEeChHHHHHHHHHHHHh-------cCCC-CccccCCHHHHHHHH
Confidence 4321 1 11222222221 00000 0000112233333333331 1221 136899999999999
Q ss_pred HHHHHHHH-cCCC-----EEEEEccCccHHHHHHhhhheeecCCeEEeeCCHH
Q 006897 225 ELLASMAK-AKQR-----TVVLSIHQPSYRILQYISKFLILSRGSVVHYGSLE 271 (627)
Q Consensus 225 ~~L~~l~~-~~g~-----Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~ 271 (627)
++++++.+ +.|. ||++.+||++ + .+||++..+.+|+++.+++..
T Consensus 290 ~ller~~~~~~GsIT~~~TVlv~~hdm~-e--~i~d~v~~i~dG~Ivls~~la 339 (438)
T PRK07721 290 KLLERTGTNASGSITAFYTVLVDGDDMN-E--PIADTVRGILDGHFVLDRQLA 339 (438)
T ss_pred HHHHHhcCCCCCCeeeEEEEEEECCCCC-c--hhhhhEEEecCEEEEEeccHH
Confidence 99999874 3575 9999999998 3 789999999999999998765
|
|
| >TIGR03861 phenyl_ABC_PedC alcohol ABC transporter, permease protein | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.1e-10 Score=117.12 Aligned_cols=235 Identities=13% Similarity=0.131 Sum_probs=161.0
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhccC-CC------Ch--h-hHHHHHHHHHHHHHHHHHHHHH
Q 006897 343 LYEIMVLCSRFWKIIYRTKQLFLARTMQALVGGFGLGSVYVRV-RK------DE--A-GVAERLGLFAFSLSFLLSSTVE 412 (627)
Q Consensus 343 ~~q~~~l~~R~~~~~~Rd~~~~~~r~~~~~~~~l~~G~~f~~~-~~------~~--~-~~~~~~g~~ff~~~~~~~~~~~ 412 (627)
+++++.+++|+++...|||..+..-+++.++.-+++|.+|-.. +. +. + ...--.|++.+.+.+.. +.
T Consensus 1 ~~~~~~l~~rel~~~~r~~~~~~~~ll~Pl~~l~~f~~~f~~~~~~~~~~~~~~~~~y~~fl~pGi~~~~~~~~~---~~ 77 (253)
T TIGR03861 1 LICFNGIVLREALRFVQQRSRFLSALVRPLLWLLVFAAGFRAALGISIIEPYDTYITYEVYIVPGLCCMILLFNG---MQ 77 (253)
T ss_pred ChHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHhhccccccccCCCCCCHHHHHHHHHHHHHHHHHH---HH
Confidence 3678999999999999999999999999999999999988542 11 10 1 11122233322222211 11
Q ss_pred HHhhHHHhh--HHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccccHHHHHHHHHHHHHHHHHHHH
Q 006897 413 ALPIYLQER--RVLMKEASREAYRISSYLIANTIVFLPFLFVVSLLFAIPVYWIVGLNPSIEAFVFFIFVVWLIVLMASS 490 (627)
Q Consensus 413 ~i~~~~~er--~v~~rE~~~~~Y~~~~y~la~~l~~lp~~~~~~~~f~~i~Y~~~gl~~~~~~f~~f~~~~~l~~~~~~s 490 (627)
.-.....|| ..+.+=+... .+...+.+++++...-..++..+++.++.+. .|.+.....+......+++..++..+
T Consensus 78 ~~~~~~~~r~~g~~~~l~~~p-~~~~~~~l~~~l~~~~~~~~~~~i~~~~~~~-~g~~~~~~~~l~~~~~~~l~~~~~~~ 155 (253)
T TIGR03861 78 SSLSMVYDREMGSMRVLLTSP-LPRPFLLFCKLLASALISLLQVYAFLAIAAL-VGVQPPVWGYVSVLPALVLVAFMLGA 155 (253)
T ss_pred hhhHhHHhHhcCHHHHHhhCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCCchhHHHHHHHHHHHHHHHHH
Confidence 111223333 2333333333 4778899999999988888776665555543 36655533444444455666777889
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHhhccccCCCCC---cchhhhhhhhchhHHHHHHHHHHHhCCCCccccccccC
Q 006897 491 LVLFLSAISPDFISGNSLICTVLGAFFLFSGYFIPKEYI---PKYWIFMYYISLYRYPLDSLLTNEYWSARGECFSWQKY 567 (627)
Q Consensus 491 ~~~~i~~~~~~~~~a~~~~~~~~~~~~lf~Gf~i~~~~i---p~~~~W~~yiSp~~Y~~~~l~~nef~~~~~~C~~~~~~ 567 (627)
+|.++|+++++...+..+.++++.+++..||.+.+.+.+ |.|++|+.++||+.|..|++-.- +.+
T Consensus 156 lgl~la~l~~~~~~~~~i~~~~~~~l~flSgi~~p~~~~~~~p~~l~~i~~~nPl~~~i~~~R~~-~~g----------- 223 (253)
T TIGR03861 156 LGLALSNLIRQLENFAGVMNFVIFPMFFLSSALYPLWKMQEASTWLYWICALNPFTHAVELVRFA-LYG----------- 223 (253)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHHhhHhhhhhhcccccHHHHHHHHhCcHHHHHHHHHHH-HhC-----------
Confidence 999999999999988899999899999999999998766 88999999999999999877431 111
Q ss_pred CCCCCCCCcccccchHHHHhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHhh
Q 006897 568 NNVDGDHFSKCLLTGNDVLKSRGLEKDTRWVNVGVMLAFFLFYRVLCWIILSR 620 (627)
Q Consensus 568 ~~~~~~~~~~c~~~G~~~L~~~~~~~~~~w~~~~il~~~~~~~~~l~~~~L~~ 620 (627)
+ ..|..+.+++++.+++.+++....|+
T Consensus 224 ----------------------~----~~~~~~~~~~~~~~v~~~~~~~~fr~ 250 (253)
T TIGR03861 224 ----------------------Q----LNLPALGWTLGATTLFTLLAFWGFDP 250 (253)
T ss_pred ----------------------C----cchhHHHHHHHHHHHHHHHHHHHhhc
Confidence 0 02556777888888888877766544
|
Members of this protein family, part of a larger class of efflux-type ABC transport permease proteins, are found exclusively in genomic contexts with pyrroloquinoline-quinone (PQQ) biosynthesis enzymes and/or PQQ-dependent alcohol dehydrogenases, such as the phenylethanol dehydrogenase PedE of Pseudomonas putida U. Members include PedC, an apparent phenylethanol transport protein whose suggested role is efflux to limit intracellular concentrations of toxic metabolites during phenylethanol catalysis. |
| >PRK00635 excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.5e-12 Score=159.32 Aligned_cols=105 Identities=14% Similarity=0.150 Sum_probs=84.9
Q ss_pred CCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCcc-----ccCCcCCccccC---------------------CCC
Q 006897 160 LLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTH-----VAGSFVGDEENR---------------------GIS 213 (627)
Q Consensus 160 ~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-----~~~~~~gGe~qr---------------------Pts 213 (627)
.|||.|.+.|... ...-.+..+.|+.+||.. ...+++|||.|| ||+
T Consensus 1660 ~mtv~ea~~~F~~--------~~~i~~~L~~L~~vGLgYl~LGq~~~tLSGGE~qRikLa~~l~~~~~~~~lyilDEPt~ 1731 (1809)
T PRK00635 1660 QTPIEEVAETFPF--------LKKIQKPLQALIDNGLGYLPLGQNLSSLSLSEKIAIKIAKFLYLPPKHPTLFLLDEIAT 1731 (1809)
T ss_pred cCCHHHHHHHhhc--------cHHHHHHHHHHHHcCCCeeeCCCcCCccCchHHHHHHHHHHHhcCCCCCcEEEEcCCCC
Confidence 3677777666421 122345577888899864 457888999998 999
Q ss_pred CCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeec------CCeEEeeCCHHHHHH
Q 006897 214 GLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILS------RGSVVHYGSLELLEE 275 (627)
Q Consensus 214 gLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~------~G~iv~~G~~~~~~~ 275 (627)
||++.....+++.|++|.+ .|.|||++.||++ +.+.||.|+=|. .|+|++.|+|+++.+
T Consensus 1732 GLh~~d~~~Ll~~l~~L~~-~g~tvivieH~~~--~i~~aD~iidlgp~gG~~GG~iva~Gtp~~i~~ 1796 (1809)
T PRK00635 1732 SLDNQQKSALLVQLRTLVS-LGHSVIYIDHDPA--LLKQADYLIEMGPGSGKTGGKILFSGPPKDISA 1796 (1809)
T ss_pred CCCHHHHHHHHHHHHHHHh-cCCeEEEEeCCHH--HHHhCCEEEEcCCCcccCCCEEEEEeCHHHHhh
Confidence 9999999999999999986 5899999999996 577799999994 479999999998864
|
|
| >cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.37 E-value=8e-13 Score=131.21 Aligned_cols=153 Identities=22% Similarity=0.314 Sum_probs=92.6
Q ss_pred eeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC----------------CCccceEE--ECCccCCChhhhcccE
Q 006897 87 LKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQ----------------DFDPRSIT--VNCHQIKKPAQLRKIC 148 (627)
Q Consensus 87 L~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~----------------~~~~G~i~--i~g~~~~~~~~~r~~i 148 (627)
++++++++.+| +.+|+|||||||||||.+|.-.+-.. +...+.|. +++.+ ....++...
T Consensus 14 ~~~~~i~~~~g-~n~i~G~NgsGKS~lleAi~~~l~~~~~~~~r~~~~~~~i~~g~~~~~v~~~~~~~~--~~~~~~n~~ 90 (213)
T cd03277 14 YDETEFRPGPS-LNMIIGPNGSGKSSIVCAICLGLGGKPKLLGRAKKVGEFVKRGCDEGTIEIELYGNP--GNIQVDNLC 90 (213)
T ss_pred cceeEEecCCC-eEEEECCCCCCHHHHHHHHHHHhcCCccccccccCHHHHhhCCCCcEEEEEEEEeCC--CccccCCce
Confidence 46667777776 88999999999999999986443110 00112221 11111 011233334
Q ss_pred EEEccCC-CCCCCCCHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHHHcCCccccCCcCCccccC----------------
Q 006897 149 GFVAQED-NLLPLLTVKETLMFSANFRL-KGMSHKEKEDRVESLMDELGLTHVAGSFVGDEENR---------------- 210 (627)
Q Consensus 149 g~v~Q~~-~l~~~lTV~e~l~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~~gGe~qr---------------- 210 (627)
-+++|+. .-+..++..|.+. . ++. .... +.....++|||+|+
T Consensus 91 ~~~~q~~~~~~~~~~~~e~l~-~--~~~~~~~~-----------------~~~~~~LS~G~~q~~~i~~~la~~~~~~p~ 150 (213)
T cd03277 91 QFLPQDRVGEFAKLSPIELLV-K--FREGEQLQ-----------------ELDPHHQSGGERSVSTMLYLLSLQELTRCP 150 (213)
T ss_pred EEEchHHHHHHHhCChHhHhe-e--eecCCCcc-----------------ccchhhccccHHHHHHHHHHHHHHhccCCC
Confidence 4667763 3345667766552 1 110 0000 00112333444442
Q ss_pred ------CCCCCCHHHHHHHHHHHHHHHHcCC-CEEEEEccCccHHHHHHhh--hheeecCCe
Q 006897 211 ------GISGLDSTSALQVIELLASMAKAKQ-RTVVLSIHQPSYRILQYIS--KFLILSRGS 263 (627)
Q Consensus 211 ------PtsgLD~~~~~~i~~~L~~l~~~~g-~Tii~~tH~~~~~i~~~~D--~i~vL~~G~ 263 (627)
|++|||+..+..+++.|++++++.| .|+|++||++.. +.+.+| ++++|++|+
T Consensus 151 llllDEP~~~LD~~~~~~i~~~l~~~~~~~g~~~viiith~~~~-~~~~~~~~~v~~l~~g~ 211 (213)
T cd03277 151 FRVVDEINQGMDPTNERKVFDMLVETACKEGTSQYFLITPKLLP-GLNYHEKMTVLCVYNGP 211 (213)
T ss_pred EEEEecccccCCHHHHHHHHHHHHHHhhcCCCceEEEEchhhcc-CCcccCceEEEEEecCc
Confidence 9999999999999999999976534 589999999873 667776 778888886
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.33 E-value=1e-12 Score=137.91 Aligned_cols=150 Identities=21% Similarity=0.307 Sum_probs=104.4
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEE-----------ECCccCCC-hhhhc---ccEEEEccC----
Q 006897 94 ARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSIT-----------VNCHQIKK-PAQLR---KICGFVAQE---- 154 (627)
Q Consensus 94 i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~-----------i~g~~~~~-~~~~r---~~ig~v~Q~---- 154 (627)
.++|+++||+||||-||||-+|+|+|.+.|+- |+-. +.|..+.+ -+.+. -++..=+|-
T Consensus 97 pr~G~V~GilG~NGiGKsTalkILaGel~PNL---G~~~~pp~wdeVi~~FrGtELq~YF~~l~~g~~r~v~K~QYVd~i 173 (591)
T COG1245 97 PRPGKVVGILGPNGIGKSTALKILAGELKPNL---GRYEDPPSWDEVIKRFRGTELQNYFKKLYEGELRAVHKPQYVDLI 173 (591)
T ss_pred CCCCcEEEEEcCCCccHHHHHHHHhCccccCC---CCCCCCCCHHHHHHHhhhhHHHHHHHHHHcCCcceecchHHHHHH
Confidence 56899999999999999999999999999964 3210 11111100 00010 012222332
Q ss_pred CCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccC----CcCCccccC------------------CC
Q 006897 155 DNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAG----SFVGDEENR------------------GI 212 (627)
Q Consensus 155 ~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~----~~~gGe~qr------------------Pt 212 (627)
+..+.. +|.|-|.-. +.+-+.+++.+.++|++..+ .++|||.|| |+
T Consensus 174 Pk~~KG-~v~elLk~~-----------de~g~~devve~l~L~nvl~r~v~~LSGGELQr~aIaa~l~rdADvY~FDEps 241 (591)
T COG1245 174 PKVVKG-KVGELLKKV-----------DERGKFDEVVERLGLENVLDRDVSELSGGELQRVAIAAALLRDADVYFFDEPS 241 (591)
T ss_pred HHHhcc-hHHHHHHhh-----------hhcCcHHHHHHHhcchhhhhhhhhhcCchHHHHHHHHHHHhccCCEEEEcCCc
Confidence 233333 666665421 12235788999999987765 466999999 99
Q ss_pred CCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeec
Q 006897 213 SGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILS 260 (627)
Q Consensus 213 sgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~ 260 (627)
|-||...+....+.++++++. +++||++.||+.. +--++|-|.++.
T Consensus 242 SyLDi~qRl~~ar~Irel~~~-~k~ViVVEHDLav-LD~lsD~vhI~Y 287 (591)
T COG1245 242 SYLDIRQRLNAARVIRELAED-GKYVIVVEHDLAV-LDYLSDFVHILY 287 (591)
T ss_pred ccccHHHHHHHHHHHHHHhcc-CCeEEEEechHHH-HHHhhheeEEEe
Confidence 999999999999999999875 8999999999973 444678777775
|
|
| >cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.9e-12 Score=127.55 Aligned_cols=155 Identities=12% Similarity=0.063 Sum_probs=91.2
Q ss_pred ceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCccCCChhhhcccEEEEccCCCCCCCCCHHHHHH
Q 006897 89 SVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKKPAQLRKICGFVAQEDNLLPLLTVKETLM 168 (627)
Q Consensus 89 ~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~~~~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~ 168 (627)
..++++.+|++++|+||||||||||||+|++..-.. ..|... . .-+..+++..|.. ..+...+++.
T Consensus 21 ~~~~~l~~~~~~~l~G~Ng~GKStll~~i~~~~~~~--~~g~~~------~---~~~~~i~~~dqi~---~~~~~~d~i~ 86 (202)
T cd03243 21 PNDINLGSGRLLLITGPNMGGKSTYLRSIGLAVLLA--QIGCFV------P---AESASIPLVDRIF---TRIGAEDSIS 86 (202)
T ss_pred eeeEEEcCCeEEEEECCCCCccHHHHHHHHHHHHHH--HcCCCc------c---ccccccCCcCEEE---EEecCccccc
Confidence 345556689999999999999999999999543211 012211 0 0122344433322 2222333332
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHHHcCCccccCCcCCccccCCCCCCCHHHHHHHHH-HHHHHHHcCCCEEEEEccCccH
Q 006897 169 FSANFRLKGMSHKEKEDRVESLMDELGLTHVAGSFVGDEENRGISGLDSTSALQVIE-LLASMAKAKQRTVVLSIHQPSY 247 (627)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~gGe~qrPtsgLD~~~~~~i~~-~L~~l~~~~g~Tii~~tH~~~~ 247 (627)
... . .-.....++..+++... ...-.+-.| |++|+|+.....+.. +++.+.+ .+.++|++||+++
T Consensus 87 ~~~----s--~~~~e~~~l~~i~~~~~---~~~llllDE---p~~gld~~~~~~l~~~ll~~l~~-~~~~vi~~tH~~~- 152 (202)
T cd03243 87 DGR----S--TFMAELLELKEILSLAT---PRSLVLIDE---LGRGTSTAEGLAIAYAVLEHLLE-KGCRTLFATHFHE- 152 (202)
T ss_pred CCc----e--eHHHHHHHHHHHHHhcc---CCeEEEEec---CCCCCCHHHHHHHHHHHHHHHHh-cCCeEEEECChHH-
Confidence 110 0 00111223444544332 000111222 999999998888765 4566654 5899999999975
Q ss_pred HHHHHhhhheeecCCeEEeeCCHHH
Q 006897 248 RILQYISKFLILSRGSVVHYGSLEL 272 (627)
Q Consensus 248 ~i~~~~D~i~vL~~G~iv~~G~~~~ 272 (627)
+.+.+|++..+++|++...++..+
T Consensus 153 -~~~~~~~~~~l~~~~~~~~~~~~~ 176 (202)
T cd03243 153 -LADLPEQVPGVKNLHMEELITTGG 176 (202)
T ss_pred -HHHHhhcCCCeEEEEEEEEecCCe
Confidence 678899999999999988876533
|
Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru |
| >KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.32 E-value=3.8e-12 Score=135.62 Aligned_cols=180 Identities=17% Similarity=0.176 Sum_probs=123.7
Q ss_pred ceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEEC
Q 006897 55 CKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVN 134 (627)
Q Consensus 55 ~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~ 134 (627)
..|...|.+..| +.+.+|++-++++..|..+||+|+||+|||||||+|+. |.|...
T Consensus 79 ~Di~~~~fdLa~---------------G~k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~---------~~v~~f 134 (582)
T KOG0062|consen 79 KDIHIDNFDLAY---------------GGKILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN---------GQVSGF 134 (582)
T ss_pred cceeeeeeeeee---------------cchhhhcCCceeeecccccceeCCCCCcHHHHHHHHHh---------cCcCcc
Confidence 358899999999 45679999999999999999999999999999999984 333222
Q ss_pred CccCCChhhhcccEEEEccC-CCCCCCCCHHHHHHHHHHhcCCCCCHH-HHHHHHHHHHHHcCCccc-----cCCcCCcc
Q 006897 135 CHQIKKPAQLRKICGFVAQE-DNLLPLLTVKETLMFSANFRLKGMSHK-EKEDRVESLMDELGLTHV-----AGSFVGDE 207 (627)
Q Consensus 135 g~~~~~~~~~r~~ig~v~Q~-~~l~~~lTV~e~l~~~~~~~~~~~~~~-~~~~~v~~~l~~lgL~~~-----~~~~~gGe 207 (627)
.. +.+.+. -+++-. ..+...+.+.+-+.--..+ ... +.++...++|..+|..+- ...++||=
T Consensus 135 ~v----eqE~~g--~~t~~~~~~l~~D~~~~dfl~~e~~l-----~~~~~l~ei~~~~L~glGFt~emq~~pt~slSGGW 203 (582)
T KOG0062|consen 135 HV----EQEVRG--DDTEALQSVLESDTERLDFLAEEKEL-----LAGLTLEEIYDKILAGLGFTPEMQLQPTKSLSGGW 203 (582)
T ss_pred Cc----hhheec--cchHHHhhhhhccHHHHHHHHhhhhh-----hccchHHHHHHHHHHhCCCCHHHHhccccccCcch
Confidence 11 112221 122221 1233333343333322111 111 233444458888888643 24566886
Q ss_pred ccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeE-EeeC
Q 006897 208 ENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSV-VHYG 268 (627)
Q Consensus 208 ~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~i-v~~G 268 (627)
|-| ||+.||..+..-+.+.|+.+ +.|+|+||||-.. +-+.|..|+-+++-++ .|.|
T Consensus 204 rMrlaLARAlf~~pDlLLLDEPTNhLDv~av~WLe~yL~t~----~~T~liVSHDr~F-Ln~V~tdIIH~~~~kL~~YkG 278 (582)
T KOG0062|consen 204 RMRLALARALFAKPDLLLLDEPTNHLDVVAVAWLENYLQTW----KITSLIVSHDRNF-LNTVCTDIIHLENLKLDYYKG 278 (582)
T ss_pred hhHHHHHHHHhcCCCEEeecCCcccchhHHHHHHHHHHhhC----CceEEEEeccHHH-HHHHHHHHHHHhhhhhhhhcC
Confidence 655 99999999999999999764 4799999999885 7889999999988776 4568
Q ss_pred CHHHHH
Q 006897 269 SLELLE 274 (627)
Q Consensus 269 ~~~~~~ 274 (627)
+.++..
T Consensus 279 N~~~Fv 284 (582)
T KOG0062|consen 279 NYSQFV 284 (582)
T ss_pred cHHHHH
Confidence 776653
|
|
| >cd03284 ABC_MutS1 MutS1 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.7e-12 Score=127.75 Aligned_cols=161 Identities=14% Similarity=0.140 Sum_probs=102.9
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCccCCChhhhcccEEEEccCCCCCCCCCHH
Q 006897 85 HILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKKPAQLRKICGFVAQEDNLLPLLTVK 164 (627)
Q Consensus 85 ~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~~~~~~~~r~~ig~v~Q~~~l~~~lTV~ 164 (627)
.+.+|++++.++ ++++|+||||||||||||++++..-. +. .|..+ ..-+..++++.| +++.+++.
T Consensus 19 ~v~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~~~l-----~~---~g~~v---p~~~~~i~~~~~---i~~~~~~~ 83 (216)
T cd03284 19 FVPNDTELDPER-QILLITGPNMAGKSTYLRQVALIALL-----AQ---IGSFV---PASKAEIGVVDR---IFTRIGAS 83 (216)
T ss_pred eEeeeEEecCCc-eEEEEECCCCCChHHHHHHHHHHHHH-----hc---cCCee---ccccceecceee---EeccCCch
Confidence 489999999988 99999999999999999999875422 11 11111 111345777754 57889999
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccCCcCCccccCCCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccC
Q 006897 165 ETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAGSFVGDEENRGISGLDSTSALQVIELLASMAKAKQRTVVLSIHQ 244 (627)
Q Consensus 165 e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~gGe~qrPtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~ 244 (627)
|++..+.. .-.....++..+++...= ..-.+-.|.-+.|+++|.... ...+++.+.+..+.|+|++||+
T Consensus 84 ~~ls~g~s------~f~~e~~~l~~~l~~~~~---~~llllDEp~~gt~~lD~~~~--~~~il~~l~~~~~~~vi~~TH~ 152 (216)
T cd03284 84 DDLAGGRS------TFMVEMVETANILNNATE---RSLVLLDEIGRGTSTYDGLSI--AWAIVEYLHEKIGAKTLFATHY 152 (216)
T ss_pred hhhccCcc------hHHHHHHHHHHHHHhCCC---CeEEEEecCCCCCChHHHHHH--HHHHHHHHHhccCCcEEEEeCc
Confidence 99976521 111112334445543210 011113443334899998652 2334444444337899999999
Q ss_pred ccHHHHHHhhhheeecCCeEEeeCCHHHH
Q 006897 245 PSYRILQYISKFLILSRGSVVHYGSLELL 273 (627)
Q Consensus 245 ~~~~i~~~~D~i~vL~~G~iv~~G~~~~~ 273 (627)
. ++.+++|++..+++|++...+..+++
T Consensus 153 ~--~l~~l~~~~~~v~~~~~~~~~~~~~l 179 (216)
T cd03284 153 H--ELTELEGKLPRVKNFHVAVKEKGGGV 179 (216)
T ss_pred H--HHHHHhhcCCCeEEEEEEEEeeCCeE
Confidence 6 47889999888888998776665544
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam |
| >cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.4e-12 Score=130.28 Aligned_cols=151 Identities=18% Similarity=0.206 Sum_probs=87.9
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCccCCChhhhcccEEEEccCC-------C
Q 006897 84 LHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKKPAQLRKICGFVAQED-------N 156 (627)
Q Consensus 84 ~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~~~~~~~~r~~ig~v~Q~~-------~ 156 (627)
+.+.+|++++..+|++++|.||||+|||||+++++-..--. ..|. |||.+. .
T Consensus 17 ~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~~la--~~g~-------------------~vpa~~~~~~~~~~ 75 (222)
T cd03285 17 AFIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGVIVLMA--QIGC-------------------FVPCDSADIPIVDC 75 (222)
T ss_pred CeEEeeEEEeecCCeEEEEECCCCCChHHHHHHHHHHHHHH--HhCC-------------------CcCcccEEEeccce
Confidence 35899999999999999999999999999999985110000 0010 111111 1
Q ss_pred CCCCCCHHHHHHHHHHhcCCCCCH-HHHHHHHHHHHHHcCCccccCCcCCccccCCCCCCCHHHHHHHHHHHHHHHHcCC
Q 006897 157 LLPLLTVKETLMFSANFRLKGMSH-KEKEDRVESLMDELGLTHVAGSFVGDEENRGISGLDSTSALQVIELLASMAKAKQ 235 (627)
Q Consensus 157 l~~~lTV~e~l~~~~~~~~~~~~~-~~~~~~v~~~l~~lgL~~~~~~~~gGe~qrPtsgLD~~~~~~i~~~L~~l~~~~g 235 (627)
++..+-..|.+. .+.+. .....++..+++.+. + ..-.+-.|.-|.|++||+.+.... .++.+.++.|
T Consensus 76 il~~~~l~d~~~-------~~lS~~~~e~~~~a~il~~~~--~-~sLvLLDEp~~gT~~lD~~~~~~~--il~~l~~~~~ 143 (222)
T cd03285 76 ILARVGASDSQL-------KGVSTFMAEMLETAAILKSAT--E-NSLIIIDELGRGTSTYDGFGLAWA--IAEYIATQIK 143 (222)
T ss_pred eEeeeccccchh-------cCcChHHHHHHHHHHHHHhCC--C-CeEEEEecCcCCCChHHHHHHHHH--HHHHHHhcCC
Confidence 111111111110 00110 111223334444321 1 111124454445999999887543 3345544457
Q ss_pred CEEEEEccCccHHHHHHhhhheeecCCeEEeeCC
Q 006897 236 RTVVLSIHQPSYRILQYISKFLILSRGSVVHYGS 269 (627)
Q Consensus 236 ~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~ 269 (627)
.++|++||+ . ++.++||++..+++|++...++
T Consensus 144 ~~vlisTH~-~-el~~~~~~~~~i~~g~~~~~~~ 175 (222)
T cd03285 144 CFCLFATHF-H-ELTALADEVPNVKNLHVTALTD 175 (222)
T ss_pred CeEEEEech-H-HHHHHhhcCCCeEEEEEEEEEe
Confidence 899999996 3 5889999999999999987654
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >TIGR02858 spore_III_AA stage III sporulation protein AA | Back alignment and domain information |
|---|
Probab=99.25 E-value=6.3e-12 Score=128.60 Aligned_cols=141 Identities=16% Similarity=0.204 Sum_probs=93.1
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCccCCC---hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhc
Q 006897 98 EILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKK---PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFR 174 (627)
Q Consensus 98 e~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~~~~---~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~ 174 (627)
.-++|+||||||||||+++|+|.++++. |++.++|+++.. ..++.+.++++||++ +.+.++|.||..-.
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~---G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~-~~~r~~v~~~~~k~---- 183 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGI---SQLGLRGKKVGIVDERSEIAGCVNGVPQHD-VGIRTDVLDGCPKA---- 183 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCC---ceEEECCEEeecchhHHHHHHHhccccccc-ccccccccccchHH----
Confidence 5789999999999999999999999864 999999998742 345666788999976 44567887773211
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCccccCCcCCccccCCCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHH-H----
Q 006897 175 LKGMSHKEKEDRVESLMDELGLTHVAGSFVGDEENRGISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYR-I---- 249 (627)
Q Consensus 175 ~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~gGe~qrPtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~-i---- 249 (627)
+.+..++...+ .+-.+-+| |. ..+.+..+++.+ + .|.|+|+++|+.+.+ +
T Consensus 184 ----------~~~~~~i~~~~----P~villDE---~~------~~e~~~~l~~~~-~-~G~~vI~ttH~~~~~~~~~r~ 238 (270)
T TIGR02858 184 ----------EGMMMLIRSMS----PDVIVVDE---IG------REEDVEALLEAL-H-AGVSIIATAHGRDVEDLYKRP 238 (270)
T ss_pred ----------HHHHHHHHhCC----CCEEEEeC---CC------cHHHHHHHHHHH-h-CCCEEEEEechhHHHHHHhCh
Confidence 11222222221 12222333 21 233455555554 3 489999999986531 1
Q ss_pred -------HHHhhhheeecCCeEEeeCCHHHH
Q 006897 250 -------LQYISKFLILSRGSVVHYGSLELL 273 (627)
Q Consensus 250 -------~~~~D~i~vL~~G~iv~~G~~~~~ 273 (627)
..++||+++|++|+ ..|+++++
T Consensus 239 ~~~~l~~~~~~~r~i~L~~~~--~~g~~~~i 267 (270)
T TIGR02858 239 VFKELIENEAFERYVVLSRRK--GPGTVEAV 267 (270)
T ss_pred HHHHHHhcCceEEEEEEecCC--CCCceeec
Confidence 14589999999877 56666543
|
Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation. |
| >PRK15066 inner membrane transport permease; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.5e-08 Score=103.62 Aligned_cols=242 Identities=12% Similarity=0.160 Sum_probs=153.8
Q ss_pred HHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHHHHHHhhccC-CC--Chhh-HHHHHHHHHHHHHHHHHHHHH-HHh
Q 006897 342 ILYEIMVLCSRFWKIIYRTKQL-FLARTMQALVGGFGLGSVYVRV-RK--DEAG-VAERLGLFAFSLSFLLSSTVE-ALP 415 (627)
Q Consensus 342 ~~~q~~~l~~R~~~~~~Rd~~~-~~~r~~~~~~~~l~~G~~f~~~-~~--~~~~-~~~~~g~~ff~~~~~~~~~~~-~i~ 415 (627)
.++-++.+.+|+++...||+.. +..-+++.++..+++|.++-.. +. +.+. ..--.|++.+... ..+.. ...
T Consensus 6 ~~~~~~~l~~re~~~~~r~~~~~ll~pli~~~~~~~vfg~~~~~~~~~~~~~~y~~fl~pGll~~~~~---~~~~~~~~~ 82 (257)
T PRK15066 6 YWIALKTIVRKEIRRFLRIWVQTLVPPVITMTLYFLIFGNLIGSRIGEMGGFSYMQFIVPGLIMMSVI---TNSYSNVAS 82 (257)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhccccCCCCCCcHHHHHHHHHHHHHHH---HHHHHHHHH
Confidence 3677899999999999999864 4555566667777777665321 11 1111 1111132222111 11111 112
Q ss_pred hHHHhhHH-HHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHH
Q 006897 416 IYLQERRV-LMKEASREAYRISSYLIANTIVFLPFLFVVSLLFAIPVYWIVGLNPSIEAFVFFIFVVWLIVLMASSLVLF 494 (627)
Q Consensus 416 ~~~~er~v-~~rE~~~~~Y~~~~y~la~~l~~lp~~~~~~~~f~~i~Y~~~gl~~~~~~f~~f~~~~~l~~~~~~s~~~~ 494 (627)
.+..+|.. -.++...--.+...+.+++++...-..++..++..++.+...|.+.. ....++..+++...+....|++
T Consensus 83 ~i~~~~~~~~~~~l~vtp~~~~~~~~~~il~~~~~~~~~~~iil~i~~~~~~~~~~--~~~~~l~~~ll~~~~f~~~gl~ 160 (257)
T PRK15066 83 SFFSAKFQRNIEELLVSPVPNHVIILGYVGGGVARGLCVGILVTLISLFFVPLQVH--HWGIVLLTVLLTAILFSLGGLI 160 (257)
T ss_pred HHHHHHHhhhHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHh--HHHHHHHHHHHHHHHHHHHHHH
Confidence 23333311 11222222357888999999988777676666655555554466543 2222333333333333345889
Q ss_pred HHHhcCCHHHHHHHHHHHHHHHHHhhccccCCCCCcchhhhhhhhchhHHHHHHHHHHHhCCCCccccccccCCCCCCCC
Q 006897 495 LSAISPDFISGNSLICTVLGAFFLFSGYFIPKEYIPKYWIFMYYISLYRYPLDSLLTNEYWSARGECFSWQKYNNVDGDH 574 (627)
Q Consensus 495 i~~~~~~~~~a~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~W~~yiSp~~Y~~~~l~~nef~~~~~~C~~~~~~~~~~~~~ 574 (627)
++.+.++......+.++++.+++..||.+.|.+++|.|++|+.++||+.|..|++=..-+ +
T Consensus 161 ~a~~~~~~~~~~~i~~~~~~pl~flSgi~~p~~~lP~~l~~i~~~nPlt~~v~~~R~~~~-g------------------ 221 (257)
T PRK15066 161 NAVFAKSFDDISIIPTFVLTPLTYLGGVFYSISLLPPFWQGVSKLNPIVYMVNAFRYGFL-G------------------ 221 (257)
T ss_pred HHHHHccHHHHHHHHHHHHHHHHHHcchhccHHhChHHHHHHHHHCcHHHHHHHHHHHHc-C------------------
Confidence 999999988888888999999999999999999999999999999999999998743211 1
Q ss_pred CcccccchHHHHhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 006897 575 FSKCLLTGNDVLKSRGLEKDTRWVNVGVMLAFFLFYRVLCWIILSRRAS 623 (627)
Q Consensus 575 ~~~c~~~G~~~L~~~~~~~~~~w~~~~il~~~~~~~~~l~~~~L~~~~~ 623 (627)
.+..+.|.++++++++.+++.+++....|++++
T Consensus 222 ----------------~~~~~~~~~l~~l~~~~~v~~~la~~~~~r~~~ 254 (257)
T PRK15066 222 ----------------ISDVPLWLAFAVLLVFIVVLYLLAWYLLERGRG 254 (257)
T ss_pred ----------------CCCccHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 011234778899999999999998888776654
|
|
| >cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms | Back alignment and domain information |
|---|
Probab=99.15 E-value=6.3e-11 Score=114.33 Aligned_cols=49 Identities=16% Similarity=0.214 Sum_probs=43.3
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecC
Q 006897 210 RGISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSR 261 (627)
Q Consensus 210 rPtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~ 261 (627)
.|+++||+..+..+.+.|+++++ .|.|+|++||+++ ..+.+|+++.+.+
T Consensus 124 Ep~~~LD~~~~~~i~~~L~~~~~-~g~tiIiiSH~~~--~~~~adrvi~i~~ 172 (178)
T cd03239 124 EIDAALDPTNRRRVSDMIKEMAK-HTSQFIVITLKKE--MFENADKLIGVLF 172 (178)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEECCHH--HHhhCCeEEEEEE
Confidence 39999999999999999999975 4799999999986 4578999999865
|
SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression. |
| >cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.2e-10 Score=114.67 Aligned_cols=131 Identities=21% Similarity=0.208 Sum_probs=75.8
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCccCCChhhhcccEEEEccCCCCCCCCCH
Q 006897 84 LHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKKPAQLRKICGFVAQEDNLLPLLTV 163 (627)
Q Consensus 84 ~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~~~~~~~~r~~ig~v~Q~~~l~~~lTV 163 (627)
..+.+|+++++++|++++|+||||+||||++|+++++.-- +++ | .+| +...+.+++
T Consensus 16 ~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~~l-----a~~---G-------------~~v---pa~~~~l~~ 71 (204)
T cd03282 16 NFIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLAIM-----AQI---G-------------CFV---PAEYATLPI 71 (204)
T ss_pred cEEEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHHHH-----HHc---C-------------CCc---chhhcCccC
Confidence 4589999999999999999999999999999999876421 111 1 011 122233444
Q ss_pred HHHHHHHHHhcCC---CCC--HHHHHHHHHHHHHHcCCccccCCcCCccccCCCCCCCHHHHHHHH-HHHHHHHHcCCCE
Q 006897 164 KETLMFSANFRLK---GMS--HKEKEDRVESLMDELGLTHVAGSFVGDEENRGISGLDSTSALQVI-ELLASMAKAKQRT 237 (627)
Q Consensus 164 ~e~l~~~~~~~~~---~~~--~~~~~~~v~~~l~~lgL~~~~~~~~gGe~qrPtsgLD~~~~~~i~-~~L~~l~~~~g~T 237 (627)
.|+|......... +.+ ..+.+ ++..+++.. ....-..-.| |++|+|+.....+. ..++.+.+ .|.+
T Consensus 72 ~d~I~~~~~~~d~~~~~~S~fs~e~~-~~~~il~~~---~~~~lvllDE---~~~gt~~~~~~~l~~~il~~l~~-~~~~ 143 (204)
T cd03282 72 FNRLLSRLSNDDSMERNLSTFASEMS-ETAYILDYA---DGDSLVLIDE---LGRGTSSADGFAISLAILECLIK-KEST 143 (204)
T ss_pred hhheeEecCCccccchhhhHHHHHHH-HHHHHHHhc---CCCcEEEecc---ccCCCCHHHHHHHHHHHHHHHHh-cCCE
Confidence 4554332111000 000 01111 222333221 1111111233 88999997766554 56677765 5899
Q ss_pred EEEEccCcc
Q 006897 238 VVLSIHQPS 246 (627)
Q Consensus 238 ii~~tH~~~ 246 (627)
+|++||+.+
T Consensus 144 ~i~~TH~~~ 152 (204)
T cd03282 144 VFFATHFRD 152 (204)
T ss_pred EEEECChHH
Confidence 999999986
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport | Back alignment and domain information |
|---|
Probab=99.11 E-value=2e-10 Score=109.13 Aligned_cols=48 Identities=17% Similarity=0.263 Sum_probs=42.9
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecC
Q 006897 211 GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSR 261 (627)
Q Consensus 211 PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~ 261 (627)
|++|+|+.....+.+.+.++.++ |.++|++||+++ +.+.+|+++.|+.
T Consensus 108 p~~gld~~~~~~l~~~l~~~~~~-~~~vii~TH~~~--~~~~~d~~~~l~~ 155 (162)
T cd03227 108 IDRGLDPRDGQALAEAILEHLVK-GAQVIVITHLPE--LAELADKLIHIKK 155 (162)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEcCCHH--HHHhhhhEEEEEE
Confidence 89999999999999999998765 889999999986 4678999999864
|
These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins. |
| >cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=99.07 E-value=2.4e-10 Score=118.23 Aligned_cols=49 Identities=14% Similarity=0.242 Sum_probs=43.6
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCe
Q 006897 211 GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGS 263 (627)
Q Consensus 211 PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~ 263 (627)
|+++||+..+..+.+.|+++.+ +.|+|++||+++ +.+.||++++|.+|.
T Consensus 201 p~~~Ld~~~~~~l~~~l~~~~~--~~tii~isH~~~--~~~~~d~~~~l~~~~ 249 (276)
T cd03241 201 IDTGISGEVAQAVGKKLKELSR--SHQVLCITHLPQ--VAAMADNHFLVEKEV 249 (276)
T ss_pred CccCCCHHHHHHHHHHHHHHhC--CCEEEEEechHH--HHHhcCcEEEEEEec
Confidence 8999999999999999999863 689999999986 568999999998763
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.98 E-value=3.3e-10 Score=118.21 Aligned_cols=191 Identities=17% Similarity=0.255 Sum_probs=125.2
Q ss_pred ceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCC---CCCCCccceE
Q 006897 55 CKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRV---RDQDFDPRSI 131 (627)
Q Consensus 55 ~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~---~~~~~~~G~i 131 (627)
+.|+++|.+.+- ..+.++.|-|+.|-.|..++++||||-||||||+.|+.+- +|. =++
T Consensus 263 ~DIKiEnF~ISA---------------~Gk~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaIPpn----IDv 323 (807)
T KOG0066|consen 263 MDIKIENFDISA---------------QGKLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPPN----IDV 323 (807)
T ss_pred ccceeeeeeeec---------------ccceeeeccceEEEecceecccCCCCCchHHHHHHHHhhhccCCCC----Cce
Confidence 357778777655 2356899999999999999999999999999999998652 332 223
Q ss_pred EECCccCC-C--h------hhhcccEEEEccCCC-----CCCCCCHHHHHHHH-HHhcCCCCCHHHHHHHHHHHHHHcCC
Q 006897 132 TVNCHQIK-K--P------AQLRKICGFVAQEDN-----LLPLLTVKETLMFS-ANFRLKGMSHKEKEDRVESLMDELGL 196 (627)
Q Consensus 132 ~i~g~~~~-~--~------~~~r~~ig~v~Q~~~-----l~~~lTV~e~l~~~-~~~~~~~~~~~~~~~~v~~~l~~lgL 196 (627)
.+-.+.+. + . +.-.++..++-.+.. --...|+.|.+.-. ..++.-+ ....+.++.++|.-+|.
T Consensus 324 LlCEQEvvad~t~Ai~tvl~aD~kRl~lLeee~~L~~q~e~Gd~taaErl~~v~~ELraiG--A~sAEarARRILAGLGF 401 (807)
T KOG0066|consen 324 LLCEQEVVADSTSAIDTVLKADKKRLALLEEEAKLMSQIEEGDTTAAERLKEVADELRAIG--ADSAEARARRILAGLGF 401 (807)
T ss_pred EeeeeeeeecCcHHHHHHHHhhHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHhc--cccchhHHHHHHhhcCC
Confidence 33222221 0 0 000111222211111 11235666666542 2233222 22345677888888887
Q ss_pred cccc-----CCcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHh
Q 006897 197 THVA-----GSFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYI 253 (627)
Q Consensus 197 ~~~~-----~~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~ 253 (627)
+.-. +..+||=|-| ||+.||..+..-+-+.|+.+. +|.++++||-.. +-..|
T Consensus 402 skEMQ~rPt~kFSGGWRMRvSLARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgWk----KTLLIVSHDQgF-LD~VC 476 (807)
T KOG0066|consen 402 SKEMQERPTTKFSGGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGWK----KTLLIVSHDQGF-LDSVC 476 (807)
T ss_pred ChhHhcCCccccCCceeeehhHHHHHhcCceeeeecCCccccccceeeehhhHHhhhh----heeEEEecccch-HHHHH
Confidence 6432 3445887765 999999998888888998873 599999999986 88899
Q ss_pred hhheeecCCeEEe-eCCHH
Q 006897 254 SKFLILSRGSVVH-YGSLE 271 (627)
Q Consensus 254 D~i~vL~~G~iv~-~G~~~ 271 (627)
..|+-|++-++-+ .|+..
T Consensus 477 tdIIHLD~qkLhyYrGNY~ 495 (807)
T KOG0066|consen 477 TDIIHLDNQKLHYYRGNYT 495 (807)
T ss_pred HHHhhhhhhhhhhhcchHH
Confidence 9999999988754 46543
|
|
| >KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.95 E-value=3.4e-09 Score=110.87 Aligned_cols=156 Identities=18% Similarity=0.276 Sum_probs=112.8
Q ss_pred cceeeceEEEEeCC-----eEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCccCCChhhhcccEEEEccCCCCC
Q 006897 84 LHILKSVSFEARDS-----EILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKKPAQLRKICGFVAQEDNLL 158 (627)
Q Consensus 84 ~~iL~~vsl~i~~G-----e~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~~~~~~~~r~~ig~v~Q~~~l~ 158 (627)
+.-+-+..+.|+.| |++..+|+||.||||++++++|+++|+. .|++.. -.++|=||...--
T Consensus 349 ~k~~g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~pd~--~~e~p~------------lnVSykpqkispK 414 (592)
T KOG0063|consen 349 KKTVGDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLKPDE--GGEIPV------------LNVSYKPQKISPK 414 (592)
T ss_pred eeeeeeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCCCCc--cCcccc------------cceeccccccCcc
Confidence 44678888888888 5789999999999999999999999874 244422 1367888874433
Q ss_pred CCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccC----CcCCccccC------------------CCCCCC
Q 006897 159 PLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAG----SFVGDEENR------------------GISGLD 216 (627)
Q Consensus 159 ~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~----~~~gGe~qr------------------PtsgLD 216 (627)
..-||++.+.--. + +.-....-+.++++-+.+++..+ .++|||.|| |.+-||
T Consensus 415 ~~~tvR~ll~~kI--r----~ay~~pqF~~dvmkpL~ie~i~dqevq~lSggelQRval~KOGGKpAdvYliDEpsAylD 488 (592)
T KOG0063|consen 415 REGTVRQLLHTKI--R----DAYMHPQFVNDVMKPLQIENIIDQEVQGLSGGELQRVALALCLGKPADVYLIDEPSAYLD 488 (592)
T ss_pred ccchHHHHHHHHh--H----hhhcCHHHHHhhhhhhhHHHHHhHHhhcCCchhhHHHHHHHhcCCCCceEEecCchhhcC
Confidence 3458988775422 1 11112334566667666665554 456999999 778899
Q ss_pred HHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeec
Q 006897 217 STSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILS 260 (627)
Q Consensus 217 ~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~ 260 (627)
+..+..--..+++.--..++|-.++.||.-. .--++||+++..
T Consensus 489 SeQRi~AskvikRfilhakktafvVEhdfIm-aTYladrvivf~ 531 (592)
T KOG0063|consen 489 SEQRIIASKVIKRFILHAKKTAFVVEHDFIM-ATYLADRVIVFE 531 (592)
T ss_pred hHHHHHHHHHHHHHHHhccchhhhhhhHHHH-HHhhcceeEEEe
Confidence 9999888888888655567899999999864 335689888764
|
|
| >COG0842 ABC-type multidrug transport system, permease component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.1e-07 Score=97.17 Aligned_cols=167 Identities=19% Similarity=0.348 Sum_probs=123.8
Q ss_pred HHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcC
Q 006897 422 RVLMKEASREAYRISSYLIANTIVFLPFLFVVSLLFAIPVYWIVGLNPSIEAFVFFIFVVWLIVLMASSLVLFLS-AISP 500 (627)
Q Consensus 422 ~v~~rE~~~~~Y~~~~y~la~~l~~lp~~~~~~~~f~~i~Y~~~gl~~~~~~f~~f~~~~~l~~~~~~s~~~~i~-~~~~ 500 (627)
..+.|=..+-.-+ ..+++++.+...-...+...+...++.+..|.. ....+..+..++.+..+...++|.+++ ...+
T Consensus 118 g~~~~~~~sp~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~ 195 (286)
T COG0842 118 GTLERLLVSPVSR-LFILLGKIVPYLVVASLIAGLVLLVIAFLLGVP-FLGSLLLLLLLLLLLLLATVALGLLLSTFAKS 195 (286)
T ss_pred CcHHHHHhCCCcH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3344444444433 567777777777776666666666666677632 333456666777777777888888666 3666
Q ss_pred CHHHHHHHHHHHHHHHHHhhccccCCCCCcchhhhhhhhchhHHHHHHHHHHHhCCCCccccccccCCCCCCCCCccccc
Q 006897 501 DFISGNSLICTVLGAFFLFSGYFIPKEYIPKYWIFMYYISLYRYPLDSLLTNEYWSARGECFSWQKYNNVDGDHFSKCLL 580 (627)
Q Consensus 501 ~~~~a~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~W~~yiSp~~Y~~~~l~~nef~~~~~~C~~~~~~~~~~~~~~~~c~~ 580 (627)
+...+..+..++..++..++|.+.|.+.+|.|++|+.+++|.+|+.+++-.....+..
T Consensus 196 ~~~~~~~~~~~~~~~~~~l~g~~~p~~~~p~~~~~i~~~~P~t~~~~~~~~~~~~~~~---------------------- 253 (286)
T COG0842 196 QLQCASAVGNLLILPLGFLSGVFFPLELLPAWLQGISYINPLTYAIDALRYVYLGGWR---------------------- 253 (286)
T ss_pred HHHHHHHHHHHHHHHHHHHccccCchhhhHHHHHHHHHHccHHHHHHHHHHHHhCCCc----------------------
Confidence 7778888888889999999999999999999999999999999999998665543321
Q ss_pred chHHHHhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 006897 581 TGNDVLKSRGLEKDTRWVNVGVMLAFFLFYRVLCWIILSRRASK 624 (627)
Q Consensus 581 ~G~~~L~~~~~~~~~~w~~~~il~~~~~~~~~l~~~~L~~~~~~ 624 (627)
.+..|.++++++++.+++.+++.+.++++.+.
T Consensus 254 ------------~~~~~~~~~~l~~~~~v~~~~~~~~~~~~~~~ 285 (286)
T COG0842 254 ------------NDGIWISLLILLLFAVVFLLLGLLLLRRRRKL 285 (286)
T ss_pred ------------hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 11267889999999999999999999887654
|
|
| >TIGR03238 dnd_assoc_3 dnd system-associated protein 3 | Back alignment and domain information |
|---|
Probab=98.93 E-value=4.7e-10 Score=120.88 Aligned_cols=64 Identities=22% Similarity=0.257 Sum_probs=51.8
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCccCCCh-----hhhcccEEEEccCC
Q 006897 84 LHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKKP-----AQLRKICGFVAQED 155 (627)
Q Consensus 84 ~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~~~~~-----~~~r~~ig~v~Q~~ 155 (627)
+.+|++||+++++||+++|+|||||||||||+ +|+..|+. .|+|.++|.++..+ ..+| +|+|+.
T Consensus 19 ~~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~~~s--Gg~I~ldg~~~~~~~~~ai~~LR----~VFQ~f 87 (504)
T TIGR03238 19 ERILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKRKFSE--GYEFFLDATHSFSPNKNAMETLD----EIFDGF 87 (504)
T ss_pred HHHHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCCCCCC--CCEEEECCEECCCCCHHHHHHHH----HHHHhh
Confidence 35899999999999999999999999999999 78877753 24899999987432 1233 788864
|
cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A. |
| >PRK00349 uvrA excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=98.83 E-value=6.8e-09 Score=122.47 Aligned_cols=113 Identities=24% Similarity=0.364 Sum_probs=87.7
Q ss_pred CCCCCHHHHHHHHHHhcCCCCC-------HHHHHHHHHHHHHHcCCccc-cC----CcCCccccC---------------
Q 006897 158 LPLLTVKETLMFSANFRLKGMS-------HKEKEDRVESLMDELGLTHV-AG----SFVGDEENR--------------- 210 (627)
Q Consensus 158 ~~~lTV~e~l~~~~~~~~~~~~-------~~~~~~~v~~~l~~lgL~~~-~~----~~~gGe~qr--------------- 210 (627)
+..+||.|.+.|.-.+...... -++..++++ .|+.+||.+. .+ +++|||+||
T Consensus 434 ~~~~~v~~~~~~~~~~~~~~~~~~~a~~~~~~i~~rl~-~L~~vGL~~l~l~r~~~~LSgGE~QRv~LA~aL~~~~~~~l 512 (943)
T PRK00349 434 VSELSIGEALEFFENLKLSEQEAKIAEPILKEIRERLK-FLVDVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVL 512 (943)
T ss_pred HhcCcHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHH-HhhccccCCCCCCCchhhCCHHHHHHHHHHHHHhhCCCCcE
Confidence 4468999999985433211100 013445554 6888898755 34 556999998
Q ss_pred -----CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheee------cCCeEEeeCCHHHHH
Q 006897 211 -----GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLIL------SRGSVVHYGSLELLE 274 (627)
Q Consensus 211 -----PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL------~~G~iv~~G~~~~~~ 274 (627)
||+|||+..+..+++.|+++++ .|.|||+++|+++ ++ ..||++++| ++|++++.|+++++.
T Consensus 513 lILDEPtagLd~~~~~~L~~~L~~L~~-~G~TVIvVeH~~~-~i-~~aD~vi~LgpgaG~~~G~iv~~g~~~e~~ 584 (943)
T PRK00349 513 YVLDEPSIGLHQRDNDRLIETLKHLRD-LGNTLIVVEHDED-TI-RAADYIVDIGPGAGVHGGEVVASGTPEEIM 584 (943)
T ss_pred EEecCCccCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCHH-HH-HhCCEEEEeccccCCCCCEEeeccCHHHHh
Confidence 9999999999999999999975 5999999999998 35 569999999 899999999998874
|
|
| >TIGR00630 uvra excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Probab=98.83 E-value=9.2e-09 Score=121.18 Aligned_cols=112 Identities=24% Similarity=0.362 Sum_probs=85.2
Q ss_pred CCCCHHHHHHHHHHhcCCCCCH-------HHHHHHHHHHHHHcCCccc-----cCCcCCccccC----------------
Q 006897 159 PLLTVKETLMFSANFRLKGMSH-------KEKEDRVESLMDELGLTHV-----AGSFVGDEENR---------------- 210 (627)
Q Consensus 159 ~~lTV~e~l~~~~~~~~~~~~~-------~~~~~~v~~~l~~lgL~~~-----~~~~~gGe~qr---------------- 210 (627)
-.|||.|.+.|...+....... ++..+++ +.|..+||... ..+++|||+||
T Consensus 433 ~~~~v~~~~~~~~~l~~~~~~~~ia~~i~~~i~~rl-~~L~~vgL~~l~l~r~~~tLSGGE~QRv~LA~aL~~~~~~~ll 511 (924)
T TIGR00630 433 SELSIREAHEFFNQLDLTPEEKKIAEEILKEIKERL-GFLIDVGLDYLTLSRAAGTLSGGEAQRIRLATQIGSGLTGVLY 511 (924)
T ss_pred hcCCHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHH-HhHhhccccccccCCCcCcCCHHHHHHHHHHHHHhhCCCCcEE
Confidence 3689999988875432211001 1222333 23677787643 45667999998
Q ss_pred ----CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheee------cCCeEEeeCCHHHHH
Q 006897 211 ----GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLIL------SRGSVVHYGSLELLE 274 (627)
Q Consensus 211 ----PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL------~~G~iv~~G~~~~~~ 274 (627)
||+|||+.....+++.|+++++ .|.|||+|+||++ ++ ..||++++| ++|++++.|+++++.
T Consensus 512 ILDEPtagLD~~~~~~L~~~L~~L~~-~G~TVIvVeHd~~-~i-~~aD~vi~LgpgaG~~~G~Iv~~g~~~el~ 582 (924)
T TIGR00630 512 VLDEPSIGLHQRDNERLINTLKRLRD-LGNTVIVVEHDEE-TI-RAADYVIDIGPGAGIHGGEVVASGTPEEIL 582 (924)
T ss_pred EEcCCccCCCHHHHHHHHHHHHHHHh-CCCEEEEEECCHH-HH-hhCCEEEEecccccCCCCEEeeccCHHHHh
Confidence 8999999999999999999976 5999999999997 35 589999999 899999999998874
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=98.80 E-value=4e-08 Score=98.03 Aligned_cols=143 Identities=17% Similarity=0.195 Sum_probs=77.1
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHc-CCCCCCCccceEEECCccCCChhhhcccEEEEccCCCCCCCCC
Q 006897 84 LHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISG-RVRDQDFDPRSITVNCHQIKKPAQLRKICGFVAQEDNLLPLLT 162 (627)
Q Consensus 84 ~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~G-l~~~~~~~~G~i~i~g~~~~~~~~~r~~ig~v~Q~~~l~~~lT 162 (627)
..+.+|+++++++|++++|+||||+||||+++++++ .+.+. .|.... ++. -.++|..|- +..+.
T Consensus 18 ~~v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~la~---~G~~v~-a~~--------~~~~~~~~i---~~~~~ 82 (222)
T cd03287 18 SFVPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIMAQ---IGSFVP-ASS--------ATLSIFDSV---LTRMG 82 (222)
T ss_pred CEEEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHHHh---CCCEEE-cCc--------eEEeccceE---EEEec
Confidence 358999999999999999999999999999999998 34443 255432 111 113333221 11122
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccCCcCCccccCCCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEc
Q 006897 163 VKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAGSFVGDEENRGISGLDSTSALQVIELLASMAKAKQRTVVLSI 242 (627)
Q Consensus 163 V~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~gGe~qrPtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~t 242 (627)
..|++.-+... -..+ -+++.++++...= ..-.+-.|--+.|+.+|..+. ....++.+.+..+.++|++|
T Consensus 83 ~~d~~~~~~St-----F~~e-~~~~~~il~~~~~---~sLvllDE~~~gT~~~d~~~i--~~~il~~l~~~~~~~~i~~T 151 (222)
T cd03287 83 ASDSIQHGMST-----FMVE-LSETSHILSNCTS---RSLVILDELGRGTSTHDGIAI--AYATLHYLLEEKKCLVLFVT 151 (222)
T ss_pred Cccccccccch-----HHHH-HHHHHHHHHhCCC---CeEEEEccCCCCCChhhHHHH--HHHHHHHHHhccCCeEEEEc
Confidence 22222211000 0011 2334555554321 111113343334454554331 23455555543478999999
Q ss_pred cCccHHHHHHhh
Q 006897 243 HQPSYRILQYIS 254 (627)
Q Consensus 243 H~~~~~i~~~~D 254 (627)
|+++ +.++.+
T Consensus 152 H~~~--l~~~~~ 161 (222)
T cd03287 152 HYPS--LGEILR 161 (222)
T ss_pred ccHH--HHHHHH
Confidence 9986 455554
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage | Back alignment and domain information |
|---|
Probab=98.78 E-value=3.8e-08 Score=101.51 Aligned_cols=48 Identities=6% Similarity=0.150 Sum_probs=37.1
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHh---hhheeecCCeE
Q 006897 211 GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYI---SKFLILSRGSV 264 (627)
Q Consensus 211 PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~---D~i~vL~~G~i 264 (627)
|+++||+..+..+.+.++++ + .+++++|+.+ ++.++| ++++.+++|++
T Consensus 219 p~a~LD~~~~~~l~~~l~~~----~-q~ii~~~~~~-~~~~~~~~~~~i~~l~~g~i 269 (270)
T cd03242 219 VLAELDLGRQAALLDAIEGR----V-QTFVTTTDLA-DFDALWLRRAQIFRVDAGTL 269 (270)
T ss_pred cchhcCHHHHHHHHHHhhcC----C-CEEEEeCCch-hccchhccCccEEEEeCcEE
Confidence 89999999999999999764 2 3455555554 366777 68999999985
|
When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=98.75 E-value=6.9e-08 Score=95.95 Aligned_cols=132 Identities=16% Similarity=0.145 Sum_probs=75.6
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHc--CCCCCCCccceEEECCccCCChhhhcccEEEEccCCC-CCCCCC
Q 006897 86 ILKSVSFEARDSEILAVVGPSGTGKSSLLRIISG--RVRDQDFDPRSITVNCHQIKKPAQLRKICGFVAQEDN-LLPLLT 162 (627)
Q Consensus 86 iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~G--l~~~~~~~~G~i~i~g~~~~~~~~~r~~ig~v~Q~~~-l~~~lT 162 (627)
|=+|+++.=..+.+++|.||||+|||||||.++. .+. . .|..... . ...++|..|... +-...+
T Consensus 18 vpnd~~l~~~~~~~~~itGpNg~GKStlLk~i~~~~~la-~---~G~~v~a-------~--~~~~~~~d~i~~~l~~~~s 84 (213)
T cd03281 18 VPNDTEIGGGGPSIMVITGPNSSGKSVYLKQVALIVFLA-H---IGSFVPA-------D--SATIGLVDKIFTRMSSRES 84 (213)
T ss_pred EcceEEecCCCceEEEEECCCCCChHHHHHHHHHHHHHH-h---CCCeeEc-------C--CcEEeeeeeeeeeeCCccC
Confidence 4566665422238999999999999999999983 332 1 1443321 1 123677777532 333446
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccCCcCCccccCCCCCCCHHHHHHH-HHHHHHHHHc--CCCEEE
Q 006897 163 VKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAGSFVGDEENRGISGLDSTSALQV-IELLASMAKA--KQRTVV 239 (627)
Q Consensus 163 V~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~gGe~qrPtsgLD~~~~~~i-~~~L~~l~~~--~g~Tii 239 (627)
+.+++... ..+ -+++..++.... ...-..-.| |++|+|+.....+ ...++++.++ .+.++|
T Consensus 85 i~~~~S~f---------~~e-l~~l~~~l~~~~---~~slvllDE---~~~gtd~~~~~~~~~ail~~l~~~~~~~~~vl 148 (213)
T cd03281 85 VSSGQSAF---------MID-LYQVSKALRLAT---RRSLVLIDE---FGKGTDTEDGAGLLIATIEHLLKRGPECPRVI 148 (213)
T ss_pred hhhccchH---------HHH-HHHHHHHHHhCC---CCcEEEecc---ccCCCCHHHHHHHHHHHHHHHHhcCCCCcEEE
Confidence 65555321 111 223333433321 000011223 8899999765544 5688888653 135899
Q ss_pred EEccCcc
Q 006897 240 LSIHQPS 246 (627)
Q Consensus 240 ~~tH~~~ 246 (627)
++||+++
T Consensus 149 i~TH~~~ 155 (213)
T cd03281 149 VSTHFHE 155 (213)
T ss_pred EEcChHH
Confidence 9999986
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >TIGR01026 fliI_yscN ATPase FliI/YscN family | Back alignment and domain information |
|---|
Probab=98.72 E-value=4.2e-08 Score=107.02 Aligned_cols=168 Identities=18% Similarity=0.222 Sum_probs=103.6
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCccCCCh----------hhhcccEEEEc
Q 006897 83 PLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKKP----------AQLRKICGFVA 152 (627)
Q Consensus 83 ~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~~~~~----------~~~r~~ig~v~ 152 (627)
..++++++ +.+.+||.++|+|+||+|||||+++|+|..+++. |.+...|..-.+. ..+++.+-++.
T Consensus 150 Gi~~iD~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~~---~vi~~iG~r~~ev~~~~~~~~~~~~l~~tvvv~~ 225 (440)
T TIGR01026 150 GVRSIDGL-LTVGKGQRIGIFAGSGVGKSTLLGMIARNTEADV---NVIALIGERGREVREFIEHDLGEEGLKRSVVVVA 225 (440)
T ss_pred eeeeeeec-cccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCE---EEEEEEeecchHHHHHHHHHhcccccceEEEEEE
Confidence 35689999 9999999999999999999999999999987753 5555544331111 11233344444
Q ss_pred cCCCCCCCCCHHHHHH--HH-----HHhcCCCCC---HHHHHHHHHHHHHHcCCccccCCcCCccccCC-CCCCCHHHHH
Q 006897 153 QEDNLLPLLTVKETLM--FS-----ANFRLKGMS---HKEKEDRVESLMDELGLTHVAGSFVGDEENRG-ISGLDSTSAL 221 (627)
Q Consensus 153 Q~~~l~~~lTV~e~l~--~~-----~~~~~~~~~---~~~~~~~v~~~l~~lgL~~~~~~~~gGe~qrP-tsgLD~~~~~ 221 (627)
+.+. ++.+-.. +. -.++..+.+ --+.-.+..+++.++++. -|| -| +.|+||....
T Consensus 226 ~~d~-----~p~~r~~~~~~a~t~AE~frd~G~~Vll~~DslTr~A~A~REisl~-------~ge--~P~~~Gypp~~~~ 291 (440)
T TIGR01026 226 TSDQ-----SPLLRLKGAYVATAIAEYFRDQGKDVLLLMDSVTRFAMAQREIGLA-------AGE--PPATKGYTPSVFS 291 (440)
T ss_pred CCCC-----CHHHHHHHHHHHHHHHHHHHHCCCCEEEEEeChHHHHHHHHHHHHh-------cCC--CCcccccChhHHH
Confidence 4322 1111111 00 000000000 000111222233333221 111 12 4699999999
Q ss_pred HHHHHHHHHHHcCCC-------EEEEEccCccHHHHHHhhhheeecCCeEEeeCCHHH
Q 006897 222 QVIELLASMAKAKQR-------TVVLSIHQPSYRILQYISKFLILSRGSVVHYGSLEL 272 (627)
Q Consensus 222 ~i~~~L~~l~~~~g~-------Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~ 272 (627)
.+-+++.+... .+. ||++.+||++ ..++|++..+.+|+++.+.+.++
T Consensus 292 ~l~~l~ERag~-~~~GSIT~i~tVl~~~~d~~---dpi~d~~~~i~dG~ivLsr~la~ 345 (440)
T TIGR01026 292 TLPRLLERAGA-SGKGSITAFYTVLVEGDDMN---EPIADSVRGILDGHIVLSRALAQ 345 (440)
T ss_pred HHHHHHHHhcc-CCCCeeeEEEEEEccCcCCC---cchhhhhccccceEEEEecchhh
Confidence 99999999864 467 8999999986 36799999999999999887653
|
This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins. |
| >PRK07196 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.4e-08 Score=109.92 Aligned_cols=176 Identities=14% Similarity=0.146 Sum_probs=109.5
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCccCCC--------hhhhcccEEEEccC
Q 006897 83 PLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKK--------PAQLRKICGFVAQE 154 (627)
Q Consensus 83 ~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~~~~--------~~~~r~~ig~v~Q~ 154 (627)
...+|+++ +++.+||+++|+|+||+|||||+++|+|..+++....|.|..+++++.+ ....|..+++++|+
T Consensus 142 Gi~aID~l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g~~~~dv~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~~d 220 (434)
T PRK07196 142 GVNAINGL-LTIGKGQRVGLMAGSGVGKSVLLGMITRYTQADVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPAD 220 (434)
T ss_pred ceeeccce-EeEecceEEEEECCCCCCccHHHHHHhcccCCCeEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEecCC
Confidence 45699999 9999999999999999999999999999987753223556556655421 01124579999999
Q ss_pred CCCCCCCCHHHHHHHHHHhcC-CCCC---HHHHHHHHHHHHHHcCCccccCCcCCccccCCCCCCCHHHHHHHHHHHHHH
Q 006897 155 DNLLPLLTVKETLMFSANFRL-KGMS---HKEKEDRVESLMDELGLTHVAGSFVGDEENRGISGLDSTSALQVIELLASM 230 (627)
Q Consensus 155 ~~l~~~lTV~e~l~~~~~~~~-~~~~---~~~~~~~v~~~l~~lgL~~~~~~~~gGe~qrPtsgLD~~~~~~i~~~L~~l 230 (627)
...+..+++.+++...+.... .+.+ --+.-.+..++..++++. ..+.+ ...|-.+..-..+-+++.+.
T Consensus 221 ~s~~~rl~a~e~a~~iAEyfr~~g~~Vll~~Dsltr~a~A~REisl~--~ge~P------~~~Gyp~svf~~l~~l~ERa 292 (434)
T PRK07196 221 ESPLMRIKATELCHAIATYYRDKGHDVLLLVDSLTRYAMAQREIALS--LGEPP------ATKGYPPSAFSIIPRLAESA 292 (434)
T ss_pred CChhhhHHHHHHHHHHHHHhhhccCCEEEeecchhHHHhhhhHHHHh--cCCCC------cccCcCHHHHHHhHHHHHHh
Confidence 999999999999988765421 1100 001122333344444431 11111 12356666666666666664
Q ss_pred HHcC--C-CEEEEEccCccHHH-HHHhhhheeecCCeEEee
Q 006897 231 AKAK--Q-RTVVLSIHQPSYRI-LQYISKFLILSRGSVVHY 267 (627)
Q Consensus 231 ~~~~--g-~Tii~~tH~~~~~i-~~~~D~i~vL~~G~iv~~ 267 (627)
-+-. | .|.+.+..-+..++ .-.+|.+.-+-+|+|+-+
T Consensus 293 g~~~~~GSIT~~~tVl~~~dD~~dpi~d~~~~ilDG~ivLs 333 (434)
T PRK07196 293 GNSSGNGTMTAIYTVLAEGDDQQDPIVDCARAVLDGHIVLS 333 (434)
T ss_pred hcCCCCEEeeeeeEEEccCCCCCCchhHhhhhhcceEEEEc
Confidence 2222 2 35555444221111 236788888889999864
|
|
| >TIGR02788 VirB11 P-type DNA transfer ATPase VirB11 | Back alignment and domain information |
|---|
Probab=98.70 E-value=8.6e-08 Score=100.70 Aligned_cols=144 Identities=12% Similarity=0.149 Sum_probs=93.4
Q ss_pred eEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCccCCChhhhcccEEEEccCC-CCCCCCCHHHHHH
Q 006897 90 VSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKKPAQLRKICGFVAQED-NLLPLLTVKETLM 168 (627)
Q Consensus 90 vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~~~~~~~~r~~ig~v~Q~~-~l~~~lTV~e~l~ 168 (627)
+++.++.|+.++|+||+|||||||+++|++.+++.. |.+.+....-.... -+..+.++.+.. .-....|..+.+.
T Consensus 137 l~~~v~~~~~ili~G~tGsGKTTll~al~~~~~~~~---~iv~ied~~El~~~-~~~~~~l~~~~~~~~~~~~~~~~~l~ 212 (308)
T TIGR02788 137 LRLAIASRKNIIISGGTGSGKTTFLKSLVDEIPKDE---RIITIEDTREIFLP-HPNYVHLFYSKGGQGLAKVTPKDLLQ 212 (308)
T ss_pred HHHHhhCCCEEEEECCCCCCHHHHHHHHHccCCccc---cEEEEcCccccCCC-CCCEEEEEecCCCCCcCccCHHHHHH
Confidence 567889999999999999999999999999998753 77777532101111 123455544421 1123356666554
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHHHcCCccccCCcCCccccCCCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHH
Q 006897 169 FSANFRLKGMSHKEKEDRVESLMDELGLTHVAGSFVGDEENRGISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYR 248 (627)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~gGe~qrPtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~ 248 (627)
...+ ...+..+-||-+ + .+..+.++.+. ..+.+++.++|..+
T Consensus 213 ~~Lr-------------------------~~pd~ii~gE~r---~-------~e~~~~l~a~~-~g~~~~i~T~Ha~~-- 254 (308)
T TIGR02788 213 SCLR-------------------------MRPDRIILGELR---G-------DEAFDFIRAVN-TGHPGSITTLHAGS-- 254 (308)
T ss_pred HHhc-------------------------CCCCeEEEeccC---C-------HHHHHHHHHHh-cCCCeEEEEEeCCC--
Confidence 4321 112233334433 1 34566777765 33446799999988
Q ss_pred HHHHhhhheeecCCeEEeeCCHHHHHH
Q 006897 249 ILQYISKFLILSRGSVVHYGSLELLEE 275 (627)
Q Consensus 249 i~~~~D~i~vL~~G~iv~~G~~~~~~~ 275 (627)
+.+..||+..|..|++...|.+.+...
T Consensus 255 ~~~~~~Rl~~l~~~~~~~~g~~~~~~~ 281 (308)
T TIGR02788 255 PEEAFEQLALMVKSSQAGLGLDFAYIV 281 (308)
T ss_pred HHHHHHHHHHHhhccccccCCCHHHHH
Confidence 467799999999999988888766553
|
The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA. |
| >TIGR01248 drrC daunorubicin resistance protein C | Back alignment and domain information |
|---|
Probab=98.68 E-value=6.6e-07 Score=84.12 Aligned_cols=129 Identities=12% Similarity=0.070 Sum_probs=93.1
Q ss_pred HhhHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccccHH--HHHHHHHHHHHHHHHHHHHHHHHH
Q 006897 419 QERRVLMKEASREAYRISSYLIANTIVFLPFLFVVSLLFAIPVYWIVGLNPSIE--AFVFFIFVVWLIVLMASSLVLFLS 496 (627)
Q Consensus 419 ~er~v~~rE~~~~~Y~~~~y~la~~l~~lp~~~~~~~~f~~i~Y~~~gl~~~~~--~f~~f~~~~~l~~~~~~s~~~~i~ 496 (627)
+|+..+.|-+..-. +.+.|+++|++...-..+++.++..++.+. .|.+.... ..+.+++...+...+...++..++
T Consensus 16 r~~G~~~~l~~tP~-~~~~~~~g~~l~~~~~~~~~~~ii~~v~~~-~g~~~~~~~~~~~~~~~~~~l~~~~f~~l~~~~a 93 (152)
T TIGR01248 16 REIGLLSRLWVLPI-HRASALLARIIAETIRAFIGTILILAIALA-LGFRFRNGVAAALLFLLIPSIFGIAFAALVMAMA 93 (152)
T ss_pred HHhHHHHHHHhCCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666555 788999999999999999998887777754 48877632 122222233333444445566665
Q ss_pred HhcCCHHHHHHHHHHHHHHHHHhhccccCCCCCcchhhhhhhhchhHHHHHHHH
Q 006897 497 AISPDFISGNSLICTVLGAFFLFSGYFIPKEYIPKYWIFMYYISLYRYPLDSLL 550 (627)
Q Consensus 497 ~~~~~~~~a~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~W~~yiSp~~Y~~~~l~ 550 (627)
...++.+..+ ...++..+++..||.+.|.+++|.|++|+.+++|++|+.+++=
T Consensus 94 ~~~~~~~~~~-~~~~v~~pl~flsg~~~P~~~mP~wlq~ia~~~Plt~~~~~~R 146 (152)
T TIGR01248 94 LRKEGRFAME-ALELAQAAAAFLNPGATPIKLFPDWAQPLIAHQPISPAIEACA 146 (152)
T ss_pred HHcCCHHHHH-HHHHHHHHHHHHhhhhcCHHhCcHHHHHHHhhCCccHHHHHHH
Confidence 5566655433 4466777888889999999999999999999999999999874
|
The model describes daunorubicin resistance protein C in bacteria. This protein confers the function of daunorubicin resistance. The protein seems to share strong sequence similarity to UvrA proteins, which are involved in excision repair of DNA. Disruption of drrC gene showed increased sensitivity upon exposure to duanorubicin. However it failed to complement uvrA mutants to exposure to UV irradiation. The mechanism on how it confers duanomycin resistance is unclear, but has been suggested to be different from DrrA and DrrB which are antiporters. |
| >cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.2e-07 Score=92.10 Aligned_cols=82 Identities=15% Similarity=0.155 Sum_probs=60.1
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCccCCChhhhcccEEEEccCC--CCCCCCCH
Q 006897 86 ILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKKPAQLRKICGFVAQED--NLLPLLTV 163 (627)
Q Consensus 86 iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~~~~~~~~r~~ig~v~Q~~--~l~~~lTV 163 (627)
..+=+.+.+++|+.++|+||||||||||+++|+|+++++. |.+.+.+..-... ..+..++++.|.. ...+..++
T Consensus 14 ~~~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~~~~---~~i~ied~~E~~~-~~~~~~~~~~~~~~~~~~~~~~~ 89 (186)
T cd01130 14 QAAYLWLAVEARKNILISGGTGSGKTTLLNALLAFIPPDE---RIITIEDTAELQL-PHPNWVRLVTRPGNVEGSGEVTM 89 (186)
T ss_pred HHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcCCCC---CEEEECCccccCC-CCCCEEEEEEecCCCCCCCccCH
Confidence 4555667799999999999999999999999999998753 8888876432111 1234567766653 34566788
Q ss_pred HHHHHHHH
Q 006897 164 KETLMFSA 171 (627)
Q Consensus 164 ~e~l~~~~ 171 (627)
.+.+....
T Consensus 90 ~~~l~~~l 97 (186)
T cd01130 90 ADLLRSAL 97 (186)
T ss_pred HHHHHHHh
Confidence 88887654
|
The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase. |
| >cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=98.57 E-value=9e-08 Score=95.23 Aligned_cols=137 Identities=19% Similarity=0.234 Sum_probs=82.0
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCccCCChhhhcccEEEEccCCCCCCCCCH
Q 006897 84 LHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKKPAQLRKICGFVAQEDNLLPLLTV 163 (627)
Q Consensus 84 ~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~~~~~~~~r~~ig~v~Q~~~l~~~lTV 163 (627)
..+-+|++++.++|++++|.||||+||||+++++++..--.. .|. .+.. + +..++++ +.++..+..
T Consensus 17 ~~v~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~~~la~--~G~------~vpa-~--~~~i~~~---~~i~~~~~~ 82 (218)
T cd03286 17 SFVPNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLAVIMAQ--MGM------DVPA-K--SMRLSLV---DRIFTRIGA 82 (218)
T ss_pred CeEEeeeEEeecCCcEEEEECCCCCchHHHHHHHHHHHHHHH--cCC------ccCc-c--ccEeccc---cEEEEecCc
Confidence 358899999999999999999999999999999986532111 011 1100 0 0112221 233444445
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccCCcC-CccccCCCCCCCHHHHHHHHHH-HHHHHHcCCCEEEEE
Q 006897 164 KETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAGSFV-GDEENRGISGLDSTSALQVIEL-LASMAKAKQRTVVLS 241 (627)
Q Consensus 164 ~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~-gGe~qrPtsgLD~~~~~~i~~~-L~~l~~~~g~Tii~~ 241 (627)
.|++..+.. +-...-.++.++++...= ..++ -.| |.+|+|+.....+... ++.+.+..+.++|++
T Consensus 83 ~d~~~~~~S------tF~~e~~~~~~il~~~~~----~sLvLlDE---~~~Gt~~~dg~~la~ail~~L~~~~~~~~i~~ 149 (218)
T cd03286 83 RDDIMKGES------TFMVELSETANILRHATP----DSLVILDE---LGRGTSTHDGYAIAHAVLEYLVKKVKCLTLFS 149 (218)
T ss_pred ccccccCcc------hHHHHHHHHHHHHHhCCC----CeEEEEec---ccCCCCchHHHHHHHHHHHHHHHhcCCcEEEE
Confidence 555543210 001112334555554321 1111 223 7788898888888877 677765348999999
Q ss_pred ccCccH
Q 006897 242 IHQPSY 247 (627)
Q Consensus 242 tH~~~~ 247 (627)
||+++.
T Consensus 150 TH~~el 155 (218)
T cd03286 150 THYHSL 155 (218)
T ss_pred eccHHH
Confidence 999863
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >PRK06002 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.8e-07 Score=101.53 Aligned_cols=183 Identities=16% Similarity=0.160 Sum_probs=105.4
Q ss_pred cceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEE
Q 006897 54 TCKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITV 133 (627)
Q Consensus 54 ~~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i 133 (627)
...++.++++..|.. ...+++.++ .+.+||.++|+||||+|||||+++|+|+.+|+. |.+.+
T Consensus 137 p~~~~r~~v~~~l~T--------------Gi~aID~L~-~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~~pd~---gvv~l 198 (450)
T PRK06002 137 PPAMTRARVETGLRT--------------GVRVIDIFT-PLCAGQRIGIFAGSGVGKSTLLAMLARADAFDT---VVIAL 198 (450)
T ss_pred CCCeEeecceEEcCC--------------CcEEeeeec-eecCCcEEEEECCCCCCHHHHHHHHhCCCCCCe---eeeee
Confidence 346899999998842 356899996 999999999999999999999999999988753 88877
Q ss_pred CC---ccCCC--h----hhhcccEEEEccCCCC--------CCCCCHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHHHcC
Q 006897 134 NC---HQIKK--P----AQLRKICGFVAQEDNL--------LPLLTVKETLMFSANFRLKGM-SHKEKEDRVESLMDELG 195 (627)
Q Consensus 134 ~g---~~~~~--~----~~~r~~ig~v~Q~~~l--------~~~lTV~e~l~~~~~~~~~~~-~~~~~~~~v~~~l~~lg 195 (627)
.| +++.. . ...++.+++|+|.+.- +..+|+.|.++- ..... ---+.-.+..++..+++
T Consensus 199 iGergrev~e~~~~~l~~~r~rtI~vV~qsd~~~~~r~~~~~~a~~iAEyfrd----~G~~Vll~~DslTr~A~A~rEis 274 (450)
T PRK06002 199 VGERGREVREFLEDTLADNLKKAVAVVATSDESPMMRRLAPLTATAIAEYFRD----RGENVLLIVDSVTRFAHAAREVA 274 (450)
T ss_pred cccCCccHHHHhHHHHHHhhCCeEEEEEcCCCCHHHHHHHHHHHHHHHHHHHH----cCCCEEEeccchHHHHHHHHHHH
Confidence 54 44321 1 1234679999997641 112233333321 00000 00011223333444444
Q ss_pred CccccCCcCCccccCCC-CCCCHHHHHHHHHHHHHHHH--c-CC-CEEEEEccCccHHH-HHHhhhheeecCCeEEee
Q 006897 196 LTHVAGSFVGDEENRGI-SGLDSTSALQVIELLASMAK--A-KQ-RTVVLSIHQPSYRI-LQYISKFLILSRGSVVHY 267 (627)
Q Consensus 196 L~~~~~~~~gGe~qrPt-sgLD~~~~~~i~~~L~~l~~--~-~g-~Tii~~tH~~~~~i-~~~~D~i~vL~~G~iv~~ 267 (627)
+. .++. |. .|-.+..-..+-+++.+..+ + .| .|.+.+..-+..++ .-++|.+.-+-+|+|+-+
T Consensus 275 l~--~ge~-------P~~~gyp~~vf~~l~~l~ERag~~~~~~GSIT~~~tvl~~~dd~~dpI~d~~~~i~Dg~ivLs 343 (450)
T PRK06002 275 LA--AGEP-------PVARGYPPSVFSELPRLLERAGPGAEGGGSITGIFSVLVDGDDHNDPVADSIRGTLDGHIVLD 343 (450)
T ss_pred Hh--cCCC-------CccccCCccHHHHhhHHHHHhccCCCCCeeeeEEEEEEecCCCCCCccHHHHHhhcceEEEEc
Confidence 31 1111 22 24444444455555555443 1 12 46665544222122 235778888888999864
|
|
| >TIGR01069 mutS2 MutS2 family protein | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.4e-07 Score=110.02 Aligned_cols=128 Identities=16% Similarity=0.197 Sum_probs=76.5
Q ss_pred eEEEEeCC-eEEEEECCCCCcHHHHHHHHHcC-CCCCCCccc-eEEECCccCCChhhhcccEEEEccCCCC-CCCCCHHH
Q 006897 90 VSFEARDS-EILAVVGPSGTGKSSLLRIISGR-VRDQDFDPR-SITVNCHQIKKPAQLRKICGFVAQEDNL-LPLLTVKE 165 (627)
Q Consensus 90 vsl~i~~G-e~~aIiGpnGsGKSTLl~~L~Gl-~~~~~~~~G-~i~i~g~~~~~~~~~r~~ig~v~Q~~~l-~~~lTV~e 165 (627)
+|+++.+| ++++|.||||+|||||||+|+|. +.+.. | .|... -...++|..|.... -+..++.+
T Consensus 314 ~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l~aq~---G~~Vpa~---------~~~~~~~~d~i~~~i~~~~si~~ 381 (771)
T TIGR01069 314 FTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLALMFQS---GIPIPAN---------EHSEIPYFEEIFADIGDEQSIEQ 381 (771)
T ss_pred ceeEeCCCceEEEEECCCCCCchHHHHHHHHHHHHHHh---CCCccCC---------ccccccchhheeeecChHhHHhh
Confidence 78888887 99999999999999999999987 33321 3 11110 01224454443221 12234444
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccCCcCCccccCCCCCCCHHHHHHH-HHHHHHHHHcCCCEEEEEccC
Q 006897 166 TLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAGSFVGDEENRGISGLDSTSALQV-IELLASMAKAKQRTVVLSIHQ 244 (627)
Q Consensus 166 ~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~gGe~qrPtsgLD~~~~~~i-~~~L~~l~~~~g~Tii~~tH~ 244 (627)
++... + .+.. ++..++..+. + ..-.+-.| |++|+|+.....+ ..+++.+.+ .|.++|++||+
T Consensus 382 ~LStf--------S-~~m~-~~~~il~~~~--~-~sLvLlDE---~g~GtD~~eg~ala~aiLe~l~~-~g~~viitTH~ 444 (771)
T TIGR01069 382 NLSTF--------S-GHMK-NISAILSKTT--E-NSLVLFDE---LGAGTDPDEGSALAISILEYLLK-QNAQVLITTHY 444 (771)
T ss_pred hhhHH--------H-HHHH-HHHHHHHhcC--C-CcEEEecC---CCCCCCHHHHHHHHHHHHHHHHh-cCCEEEEECCh
Confidence 44321 1 1111 2333444331 0 01111223 8999999999998 567777765 68999999999
Q ss_pred cc
Q 006897 245 PS 246 (627)
Q Consensus 245 ~~ 246 (627)
.+
T Consensus 445 ~e 446 (771)
T TIGR01069 445 KE 446 (771)
T ss_pred HH
Confidence 76
|
Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function. |
| >smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family | Back alignment and domain information |
|---|
Probab=98.52 E-value=1.3e-07 Score=91.87 Aligned_cols=53 Identities=6% Similarity=0.034 Sum_probs=38.6
Q ss_pred CCCCCCHHHHHHHH-HHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEE
Q 006897 211 GISGLDSTSALQVI-ELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVV 265 (627)
Q Consensus 211 PtsgLD~~~~~~i~-~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv 265 (627)
|++|+|+.....+. ..++.+.++.+.++|++||+++ +.+++|+.--+++++..
T Consensus 87 p~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~~--l~~~~~~~~~v~~~~~~ 140 (185)
T smart00534 87 LGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYHE--LTKLADEHPGVRNLHMS 140 (185)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHHH--HHHHhhcCccceEEEEE
Confidence 99999999887765 5566665534789999999984 67888864444444443
|
|
| >PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression [] | Back alignment and domain information |
|---|
Probab=98.52 E-value=9.9e-09 Score=102.38 Aligned_cols=70 Identities=21% Similarity=0.410 Sum_probs=49.6
Q ss_pred HHHHHHHHHHcCCccccCCcCCccccC----------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEE
Q 006897 184 EDRVESLMDELGLTHVAGSFVGDEENR----------------------GISGLDSTSALQVIELLASMAKAKQRTVVLS 241 (627)
Q Consensus 184 ~~~v~~~l~~lgL~~~~~~~~gGe~qr----------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~ 241 (627)
.+.+.+.++..++.. +.++|||+.+ +.++||...+..+.++|+++.+ +.-+|++
T Consensus 120 ~~~~~~~l~~~~i~~--~~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~--~~Q~ii~ 195 (220)
T PF02463_consen 120 LKDLEELLPEVGISP--EFLSGGEKSLVALALLLALQRYKPSPFLILDEVDAALDEQNRKRLADLLKELSK--QSQFIIT 195 (220)
T ss_dssp HHHHHHHHHCTTTTT--TGS-HHHHHHHHHHHHHHHHTCS--SEEEEESTTTTS-HHHHHHHHHHHHHHTT--TSEEEEE
T ss_pred ccccccccccccccc--cccccccccccccccccccccccccccccccccccccccccccccccccccccc--ccccccc
Confidence 355666676666643 2677888765 5699999999999999999863 4679999
Q ss_pred ccCccHHHHHHhhhheee
Q 006897 242 IHQPSYRILQYISKFLIL 259 (627)
Q Consensus 242 tH~~~~~i~~~~D~i~vL 259 (627)
||+.. ....+|+.+.+
T Consensus 196 Th~~~--~~~~a~~~~~v 211 (220)
T PF02463_consen 196 THNPE--MFEDADKLIGV 211 (220)
T ss_dssp -S-HH--HHTT-SEEEEE
T ss_pred ccccc--ccccccccccc
Confidence 99975 68889987765
|
The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A .... |
| >cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase | Back alignment and domain information |
|---|
Probab=98.48 E-value=1.1e-07 Score=96.53 Aligned_cols=165 Identities=13% Similarity=0.124 Sum_probs=88.8
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEE--CCccCCChhhhcccE---EEEccCCCCCCCC---CH
Q 006897 92 FEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITV--NCHQIKKPAQLRKIC---GFVAQEDNLLPLL---TV 163 (627)
Q Consensus 92 l~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i--~g~~~~~~~~~r~~i---g~v~Q~~~l~~~l---TV 163 (627)
+.+.+||.++|+||+|+|||||++.|++.+.....+ ..+.+ -+++-.+..++.+.+ -++.+-+. .+.. ..
T Consensus 11 ~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fd-v~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~-~~~~~~~~~ 88 (249)
T cd01128 11 APIGKGQRGLIVAPPKAGKTTLLQSIANAITKNHPE-VYLIVLLIDERPEEVTDMQRSVKGEVIASTFDE-PPERHVQVA 88 (249)
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHhccccccCC-eEEEEEEccCCCccHHHHHHHhccEEEEecCCC-CHHHHHHHH
Confidence 578999999999999999999999999887653211 23222 222111223333222 22222221 1110 01
Q ss_pred HHHHHHHHHhcCCCCC----HHHHHHHHHHHHHHcCCccccCCcCCcc--------ccC----------------CCCCC
Q 006897 164 KETLMFSANFRLKGMS----HKEKEDRVESLMDELGLTHVAGSFVGDE--------ENR----------------GISGL 215 (627)
Q Consensus 164 ~e~l~~~~~~~~~~~~----~~~~~~~v~~~l~~lgL~~~~~~~~gGe--------~qr----------------PtsgL 215 (627)
+.-+..+...+..+.+ -++ -.+..+..+.+.+.. -..++||+ +|| +|+.+
T Consensus 89 ~~~~~~a~~~~~~G~~vll~iDe-i~r~a~a~~ev~~~~-G~~~sgG~~~~~~~~~~q~~~~Ar~~~~~gsIt~l~T~~~ 166 (249)
T cd01128 89 EMVLEKAKRLVEHGKDVVILLDS-ITRLARAYNTVVPPS-GKILSGGVDANALHKPKRFFGAARNIEEGGSLTIIATALV 166 (249)
T ss_pred HHHHHHHHHHHHCCCCEEEEEEC-HHHhhhhhhhccccC-CCCCCCCcChhhhhhhHHHHHHhcCCCCCCceEEeeehee
Confidence 1111111111111100 011 122333334443322 12235787 555 77888
Q ss_pred CHHHHHH-HHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEE
Q 006897 216 DSTSALQ-VIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVV 265 (627)
Q Consensus 216 D~~~~~~-i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv 265 (627)
|+.+..+ ++ +.++.. .+.|.|+.+|++. ....+|.|.+|+.|++.
T Consensus 167 d~~~~~~~~i--~~~~~~-~~~~~ivls~~la--~~~~~paI~vl~s~sr~ 212 (249)
T cd01128 167 DTGSRMDDVI--FEEFKG-TGNMELVLDRRLA--ERRIFPAIDILKSGTRK 212 (249)
T ss_pred cCCCcccchH--HHHHhc-CCCcEEEEchHHh--hCCCCCeEEEcCCCCcc
Confidence 8644443 54 455533 4689999999997 36789999999999974
|
It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain. |
| >PRK09825 idnK D-gluconate kinase; Provisional | Back alignment and domain information |
|---|
Probab=98.45 E-value=1.2e-07 Score=91.28 Aligned_cols=68 Identities=21% Similarity=0.296 Sum_probs=48.5
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCccCCChhhhcc-cEEEEccCCCCCCCCCHHHHHHHH
Q 006897 96 DSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKKPAQLRK-ICGFVAQEDNLLPLLTVKETLMFS 170 (627)
Q Consensus 96 ~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~~~~~~~~r~-~ig~v~Q~~~l~~~lTV~e~l~~~ 170 (627)
+||+++|+|+||||||||+++|+|++.+ +.++|.++......++ ..|+.+|+...++..++.+++.+.
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l~~-------~~i~gd~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~ 70 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALFSA-------KFIDGDDLHPAKNIDKMSQGIPLTDEDRLPWLERLNDASYS 70 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCC-------EEECCcccCCHhHHHHHhcCCCCCcccchHHHHHHHHHHHH
Confidence 6999999999999999999999998754 4677776533222222 356777775555566666666654
|
|
| >TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family | Back alignment and domain information |
|---|
Probab=98.44 E-value=9.8e-08 Score=95.85 Aligned_cols=163 Identities=20% Similarity=0.157 Sum_probs=91.3
Q ss_pred eeece-EEEEeCCeEEEEECCCCCcHHHHHHHHH--cCCCCCCCccceEEECCccCCChhh---hcccEEEEccCCCCCC
Q 006897 86 ILKSV-SFEARDSEILAVVGPSGTGKSSLLRIIS--GRVRDQDFDPRSITVNCHQIKKPAQ---LRKICGFVAQEDNLLP 159 (627)
Q Consensus 86 iL~~v-sl~i~~Ge~~aIiGpnGsGKSTLl~~L~--Gl~~~~~~~~G~i~i~g~~~~~~~~---~r~~ig~v~Q~~~l~~ 159 (627)
-||++ ..-+++|++++|.||+|+|||||...++ ++ ++.. +.+.+.... ..++ ..+..|+.+|+....+
T Consensus 8 ~LD~~l~GGi~~G~~~~i~G~~G~GKT~l~~~~~~~~~-~~g~---~~~~is~e~--~~~~i~~~~~~~g~~~~~~~~~~ 81 (229)
T TIGR03881 8 GLDKLLEGGIPRGFFVAVTGEPGTGKTIFCLHFAYKGL-RDGD---PVIYVTTEE--SRESIIRQAAQFGMDFEKAIEEG 81 (229)
T ss_pred hHHHhhcCCCcCCeEEEEECCCCCChHHHHHHHHHHHH-hcCC---eEEEEEccC--CHHHHHHHHHHhCCCHHHHhhcC
Confidence 46664 5679999999999999999999988654 43 3321 456665533 1122 2334666666432222
Q ss_pred CCCHHHHHHHHH--HhcCCCCCHHHHHHHHHHHHHHcCCcc---ccCCcCCccccCCCCCCCHHHHHHHHHHHHHHHHcC
Q 006897 160 LLTVKETLMFSA--NFRLKGMSHKEKEDRVESLMDELGLTH---VAGSFVGDEENRGISGLDSTSALQVIELLASMAKAK 234 (627)
Q Consensus 160 ~lTV~e~l~~~~--~~~~~~~~~~~~~~~v~~~l~~lgL~~---~~~~~~gGe~qrPtsgLD~~~~~~i~~~L~~l~~~~ 234 (627)
.+.+.|.+.... .......+.++..+++.++++..|+.. +.|.+..=-.. ++....++...|++..++.
T Consensus 82 ~l~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~vvIDsl~~l~~~------~~~~~r~~~~~l~~~l~~~ 155 (229)
T TIGR03881 82 KLVIIDALMKEKEDEWSLRELSIEELLNKVIEAKKYLGYGHARLVIDSMSAFWLD------KPAMARKYSYYLKRVLNRW 155 (229)
T ss_pred CEEEEEccccccccccccccCCHHHHHHHHHHHHHhhccCceEEEecCchhhhcc------ChHHHHHHHHHHHHHHHhC
Confidence 233333221000 000112345666777888888776432 22322110000 3333455555566665668
Q ss_pred CCEEEEEccCccH-------HHHHHhhhheeec
Q 006897 235 QRTVVLSIHQPSY-------RILQYISKFLILS 260 (627)
Q Consensus 235 g~Tii~~tH~~~~-------~i~~~~D~i~vL~ 260 (627)
|.|+|+++|.... .+..+||.|+.|+
T Consensus 156 ~~tvil~~~~~~~~~~~~~~~~~~l~D~vI~L~ 188 (229)
T TIGR03881 156 NFTILLTSQYAITTSQAFGFGIEHVADGIIRFR 188 (229)
T ss_pred CCEEEEEecccccCCCCcccceEEEEeEEEEEE
Confidence 9999999995431 2345678888876
|
Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain. |
| >PRK00064 recF recombination protein F; Reviewed | Back alignment and domain information |
|---|
Probab=98.36 E-value=3.1e-06 Score=90.94 Aligned_cols=49 Identities=16% Similarity=0.281 Sum_probs=39.6
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHh--hhheeecCCeE
Q 006897 211 GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYI--SKFLILSRGSV 264 (627)
Q Consensus 211 PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~--D~i~vL~~G~i 264 (627)
|+++||+..+..+++.+.++ +..+++++|+++. +...+ ++++.+++|++
T Consensus 309 ~~s~LD~~~~~~l~~~l~~~----~~qv~it~~~~~~-~~~~~~~~~i~~v~~G~i 359 (361)
T PRK00064 309 VASELDDGRRAALLERLKGL----GAQVFITTTDLED-LADLLENAKIFHVEQGKI 359 (361)
T ss_pred chhhhCHHHHHHHHHHHhcc----CCEEEEEcCChhh-hhhhhccCcEEEEeCCEE
Confidence 88999999999999988754 3578999998763 55554 47889999987
|
|
| >TIGR03518 ABC_perm_GldF gliding motility-associated ABC transporter permease protein GldF | Back alignment and domain information |
|---|
Probab=98.35 E-value=0.00014 Score=73.59 Aligned_cols=219 Identities=14% Similarity=0.128 Sum_probs=125.3
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcc---C-CCChhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhH
Q 006897 347 MVLCSRFWKIIYRTKQLFLARTMQALVGGFGLGSVYVR---V-RKDEAGVAERLGLFAFSLSFLLSSTVEALPIYLQERR 422 (627)
Q Consensus 347 ~~l~~R~~~~~~Rd~~~~~~r~~~~~~~~l~~G~~f~~---~-~~~~~~~~~~~g~~ff~~~~~~~~~~~~i~~~~~er~ 422 (627)
+.+.||+++.+.|.|..+..-.+-.++.|+.. ..|.. . ..+.++...-.+.. ...++.. +|.. -..
T Consensus 2 ~~i~~kEl~~~f~sp~~yv~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~f~~~--~~~~~~~-----~p~l--~~~ 71 (240)
T TIGR03518 2 KAIFKKEFNSFFSSPIGYLVIAVFLLANGLFL-WVFPGDFNILDYGYADLTPFFSLA--PWVFLFL-----IPAI--TMR 71 (240)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH-HHHhhhhhHHhcCcchHHHHHHHH--HHHHHHH-----HHHH--HHH
Confidence 46889999999999998877666666666442 22211 1 11112222111111 1111111 1111 224
Q ss_pred HHHHHhcCCCC--------ChHHHHHHHHHHHHHHHHHHHH---Hhhhhhhcccccc---ccHHHHHHHHHHHHHHHHHH
Q 006897 423 VLMKEASREAY--------RISSYLIANTIVFLPFLFVVSL---LFAIPVYWIVGLN---PSIEAFVFFIFVVWLIVLMA 488 (627)
Q Consensus 423 v~~rE~~~~~Y--------~~~~y~la~~l~~lp~~~~~~~---~f~~i~Y~~~gl~---~~~~~f~~f~~~~~l~~~~~ 488 (627)
.+.+||++|.. +.+.+.++|.++-.-..++..+ ++....++ .|.+ .+...++...+..++...+.
T Consensus 72 ~ia~Er~~GTle~Llt~Pvs~~~ivlgK~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~ 150 (240)
T TIGR03518 72 SFAEERKLGTLELLLTRPISDWQIILGKYLGSLTLVILALLPTLLYVFTIYQ-LGNPVGNLDIGSTFGSYIGLLLLGSVY 150 (240)
T ss_pred HHHHHHHcCHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCccccccHHHHHHHHHHHHHHHHHH
Confidence 55667766654 4578899999987655443322 22222222 2222 24455555555566677788
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhccccCCCCC--cchhhhhhhhchhHHHHHHHHHHHhCCCCcccccccc
Q 006897 489 SSLVLFLSAISPDFISGNSLICTVLGAFFLFSGYFIPKEYI--PKYWIFMYYISLYRYPLDSLLTNEYWSARGECFSWQK 566 (627)
Q Consensus 489 ~s~~~~i~~~~~~~~~a~~~~~~~~~~~~lf~Gf~i~~~~i--p~~~~W~~yiSp~~Y~~~~l~~nef~~~~~~C~~~~~ 566 (627)
.++|.++|+++++...|..+...+... ++.|+.. ..++ |.+..|+.|+||..|-.+.. . | .
T Consensus 151 ~aig~~iSsl~~~q~~a~~~~~~~~~~--l~~~~~~-l~~~~~~~~~~~l~~~sp~~~~~~~~-~----g-~-------- 213 (240)
T TIGR03518 151 TAIGLFASSLTENQIVAFIIAVFLCFL--FYFGFDG-LASLLWGGSAYTISELGLSYHYESIS-R----G-V-------- 213 (240)
T ss_pred HHHHHHHHHHhchHHHHHHHHHHHHHH--HHHHHHH-HhhhcchhHHHHHHHcCHHHHHHHHH-c----C-c--------
Confidence 899999999999998886555433222 2222211 2333 78899999999977643322 0 0 0
Q ss_pred CCCCCCCCCcccccchHHHHhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhh
Q 006897 567 YNNVDGDHFSKCLLTGNDVLKSRGLEKDTRWVNVGVMLAFFLFYRVLCWIILSRR 621 (627)
Q Consensus 567 ~~~~~~~~~~~c~~~G~~~L~~~~~~~~~~w~~~~il~~~~~~~~~l~~~~L~~~ 621 (627)
+ .|.++...+.+.+++..++...+++|
T Consensus 214 ------------------------i----~~~~~v~~~~~~~~~l~l~~~~~~~r 240 (240)
T TIGR03518 214 ------------------------I----DSRDVIYFLSITVLFLALTKLQLKSR 240 (240)
T ss_pred ------------------------c----cHhHHHHHHHHHHHHHHHHHHHHhcC
Confidence 0 14678888888888888888777654
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldF is believed to be a ABC transporter permease protein (along with ATP-binding subunit, GldA and a sunstrate-binding subunit, GldG) and is linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldF abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.35 E-value=1.4e-06 Score=98.33 Aligned_cols=114 Identities=23% Similarity=0.363 Sum_probs=85.0
Q ss_pred CCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHH------HHHcCCc-----cccCCcCCccccC-----------------
Q 006897 159 PLLTVKETLMFSANFRLKGMSHKEKEDRVESL------MDELGLT-----HVAGSFVGDEENR----------------- 210 (627)
Q Consensus 159 ~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~------l~~lgL~-----~~~~~~~gGe~qr----------------- 210 (627)
..|++.|.+.|...+.+....+...++.+.++ |..+||+ .-+.+++|||.||
T Consensus 427 ~~msi~~~~~f~~~l~l~~~~~~ia~~ilkei~~RL~fL~~VGL~YLtL~R~a~TLSGGEaQRIRLAtqiGS~LtGVlYV 506 (935)
T COG0178 427 SEMSIADALEFFENLKLSEKEKKIAEPILKEIKERLGFLVDVGLGYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVLYV 506 (935)
T ss_pred hhccHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHcCcCcccccccCCCcChhHHHHHHHHHHhcccceeeEEE
Confidence 45788888888765543221111112222222 3334654 4567889999999
Q ss_pred ---CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheee------cCCeEEeeCCHHHHHH
Q 006897 211 ---GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLIL------SRGSVVHYGSLELLEE 275 (627)
Q Consensus 211 ---PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL------~~G~iv~~G~~~~~~~ 275 (627)
|.-||-+.....+++.|++|++ .|-|+|+|.||.+ ..+.||+|+=| +.|+|++.|+++++.+
T Consensus 507 LDEPSIGLHqrDn~rLi~tL~~LRD-lGNTviVVEHDed--ti~~AD~iIDiGPgAG~~GGeIv~~Gtp~~i~~ 577 (935)
T COG0178 507 LDEPSIGLHQRDNERLIETLKRLRD-LGNTVIVVEHDED--TIRAADHIIDIGPGAGEHGGEIVAEGTPEELLA 577 (935)
T ss_pred ecCCccCCChhhHHHHHHHHHHHHh-cCCeEEEEecCHH--HHhhcCEEEeeCCCCCcCCCEEEEccCHHHHHh
Confidence 9999999999999999999975 6999999999986 67899999987 4689999999999863
|
|
| >PRK06315 type III secretion system ATPase; Provisional | Back alignment and domain information |
|---|
Probab=98.30 E-value=5.9e-06 Score=89.94 Aligned_cols=173 Identities=17% Similarity=0.205 Sum_probs=102.4
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC---ccCCC--hhhhc---ccEEEE---
Q 006897 83 PLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC---HQIKK--PAQLR---KICGFV--- 151 (627)
Q Consensus 83 ~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g---~~~~~--~~~~r---~~ig~v--- 151 (627)
..+++|++ +++.+||.++|+|+||+|||||+++|+|..+.. +.|.|.+.| +++.+ ...++ .+.+++
T Consensus 151 Gi~aID~~-l~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~--~~~vi~liGerg~ev~~~~~~~l~~~g~~~svvvva 227 (442)
T PRK06315 151 GVRCIDGM-LTVARGQRIGIFAGAGVGKSSLLGMIARNAEEA--DVNVIALIGERGREVREFIEGDLGEEGMKRSVIVVS 227 (442)
T ss_pred eEEEEecc-ccccCCcEEEEECCCCCCcchHHHHhhcccccC--CceEEEEECCCchHHHHHHHHHHHhcCCceEEEEEe
Confidence 35689998 999999999999999999999999999988542 226676644 44321 11121 234555
Q ss_pred --ccCC--CCCCCCCHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHHHcCCccccCCcCCccccCCCCCCCHHHHHHHHHH
Q 006897 152 --AQED--NLLPLLTVKETLMFSANFRLKGM-SHKEKEDRVESLMDELGLTHVAGSFVGDEENRGISGLDSTSALQVIEL 226 (627)
Q Consensus 152 --~Q~~--~l~~~lTV~e~l~~~~~~~~~~~-~~~~~~~~v~~~l~~lgL~~~~~~~~gGe~qrPtsgLD~~~~~~i~~~ 226 (627)
+|++ .+.+.+ +...++-..+.+.... ...+...++.+++++++|.. .... +. .|--|..-..+-++
T Consensus 228 ts~q~p~~rlnp~~-va~~IAE~~r~~g~~Vl~~~Ds~tR~a~alreV~L~~--gepp-~~-----~gypP~~fS~l~~l 298 (442)
T PRK06315 228 TSDQSSQLRLNAAY-VGTAIAEYFRDQGKTVVLMMDSVTRFARALREVGLAA--GEPP-AR-----AGYTPSVFSTLPKL 298 (442)
T ss_pred CCCCCHHHHhhHHH-HHHHHHHHHHHcCCCcchhhhHHHHHHHHHHHhCcCC--CCCc-cc-----cCCCCchhhHhHHH
Confidence 8875 344444 5555554443332211 23567788999999999841 1110 11 11112222223333
Q ss_pred HHHHHH-cCC-C----EEEEEccCccHHHHHHhhhheeecCCeEEeeCCH
Q 006897 227 LASMAK-AKQ-R----TVVLSIHQPSYRILQYISKFLILSRGSVVHYGSL 270 (627)
Q Consensus 227 L~~l~~-~~g-~----Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~ 270 (627)
+.+..+ +.| . ||++..+|++. -.+|.+.-+-+|+|+-+-..
T Consensus 299 lERag~~~~GSITai~tVl~~gdD~~d---pi~d~~~~i~dg~ivLsr~l 345 (442)
T PRK06315 299 LERSGASDKGTITAFYTVLVAGDDMNE---PVADEVKSILDGHIVLSNAL 345 (442)
T ss_pred HHHhcCCCCcceeeeEEEEecCCCCCc---ccHHHhhhhcceEEEEeccH
Confidence 333211 123 2 34445556652 46899999999999876543
|
|
| >PRK08533 flagellar accessory protein FlaH; Reviewed | Back alignment and domain information |
|---|
Probab=98.29 E-value=3e-07 Score=92.48 Aligned_cols=151 Identities=13% Similarity=0.170 Sum_probs=76.7
Q ss_pred EEeCCeEEEEECCCCCcHHHH-HHHHHcCCCCCCCccceEEECCccCCChhhhc---ccEEEEccCCCCCCCCCHHHHHH
Q 006897 93 EARDSEILAVVGPSGTGKSSL-LRIISGRVRDQDFDPRSITVNCHQIKKPAQLR---KICGFVAQEDNLLPLLTVKETLM 168 (627)
Q Consensus 93 ~i~~Ge~~aIiGpnGsGKSTL-l~~L~Gl~~~~~~~~G~i~i~g~~~~~~~~~r---~~ig~v~Q~~~l~~~lTV~e~l~ 168 (627)
.+++|+++.|.|||||||||| ++.+++..++.. ..+++.... .+.++. +..|+-.++..... ++.
T Consensus 20 gi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~---~~~yi~~e~--~~~~~~~~~~~~g~~~~~~~~~~------~l~ 88 (230)
T PRK08533 20 GIPAGSLILIEGDESTGKSILSQRLAYGFLQNGY---SVSYVSTQL--TTTEFIKQMMSLGYDINKKLISG------KLL 88 (230)
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCC---cEEEEeCCC--CHHHHHHHHHHhCCchHHHhhcC------cEE
Confidence 379999999999999999999 799998766532 445555332 112211 22333221110000 000
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHHHcCCccccCCcCCccccCCCCCC----CHHHHHHHHHHHHHHHHcCCCEEEEEccC
Q 006897 169 FSANFRLKGMSHKEKEDRVESLMDELGLTHVAGSFVGDEENRGISGL----DSTSALQVIELLASMAKAKQRTVVLSIHQ 244 (627)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~gGe~qrPtsgL----D~~~~~~i~~~L~~l~~~~g~Tii~~tH~ 244 (627)
+. ..........+.++.+.++++.....+ .+..+-.+ |++++ |+....++.+.+++++++ |.|+++++|.
T Consensus 89 ~~-~~~~~~~~~~~~~~~l~~il~~~~~~~-~~~lVIDe---~t~~l~~~~d~~~~~~l~~~l~~l~~~-g~tvi~t~~~ 162 (230)
T PRK08533 89 YI-PVYPLLSGNSEKRKFLKKLMNTRRFYE-KDVIIIDS---LSSLISNDASEVAVNDLMAFFKRISSL-NKVIILTANP 162 (230)
T ss_pred EE-EecccccChHHHHHHHHHHHHHHHhcC-CCEEEEEC---ccHHhcCCcchHHHHHHHHHHHHHHhC-CCEEEEEecc
Confidence 00 000000011223344555555432210 11111111 55655 888888999999999764 7777665543
Q ss_pred ccH------HHHHHhhhheeec
Q 006897 245 PSY------RILQYISKFLILS 260 (627)
Q Consensus 245 ~~~------~i~~~~D~i~vL~ 260 (627)
... .+..++|-++.|+
T Consensus 163 ~~~~~~~~~~~~~~~DgvI~L~ 184 (230)
T PRK08533 163 KELDESVLTILRTAATMLIRLE 184 (230)
T ss_pred cccccccceeEEEeeeEEEEEE
Confidence 210 0123456666665
|
|
| >PF12679 ABC2_membrane_2: ABC-2 family transporter protein | Back alignment and domain information |
|---|
Probab=98.29 E-value=0.00026 Score=72.68 Aligned_cols=164 Identities=16% Similarity=0.264 Sum_probs=92.5
Q ss_pred HHHHHhcCCC--------CChHHHHHHHHHHHHHHHHH---HHHH-hhh--hhhccccccccHHHHHHHHHHHHHHHH--
Q 006897 423 VLMKEASREA--------YRISSYLIANTIVFLPFLFV---VSLL-FAI--PVYWIVGLNPSIEAFVFFIFVVWLIVL-- 486 (627)
Q Consensus 423 v~~rE~~~~~--------Y~~~~y~la~~l~~lp~~~~---~~~~-f~~--i~Y~~~gl~~~~~~f~~f~~~~~l~~~-- 486 (627)
.+.+|+++|. ++...++++|.++.+...++ ..++ +.+ ......|.+.+...+....+...+..+
T Consensus 89 ~ia~E~e~gTi~~lls~PisR~~i~~gK~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (277)
T PF12679_consen 89 LIAGERERGTIELLLSKPISRSEILLGKFLAAILFSLLLLIALLVGYLLTLVLIAISGIPIDLSSFLLLLLLFVLLLLAV 168 (277)
T ss_pred HHHhccccCEeeHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHH
Confidence 4556666553 56788999999998877432 1111 111 111223445555555554443333333
Q ss_pred -HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcccc-CCCCCcchh-----hhhhhhchhHHHHHHHHHHHhCCCCc
Q 006897 487 -MASSLVLFLSAISPDFISGNSLICTVLGAFFLFSGYFI-PKEYIPKYW-----IFMYYISLYRYPLDSLLTNEYWSARG 559 (627)
Q Consensus 487 -~~~s~~~~i~~~~~~~~~a~~~~~~~~~~~~lf~Gf~i-~~~~ip~~~-----~W~~yiSp~~Y~~~~l~~nef~~~~~ 559 (627)
+..+++.++|+++++...|..+...++........... ..++ +.+. ..+.+++|..+ ++.+......+..
T Consensus 169 ~~~~sl~~~~S~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~p~~~-~~~~~~~~~~~~~- 245 (277)
T PF12679_consen 169 LVFISLGLLISSLFRSSASAILASLGLLFLLFFLYPIIVFSIAN-SEALPWVISPNLSFLSPFSP-FNLLIGSILGGGF- 245 (277)
T ss_pred HHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhhhhhhhHhHHHHcChHHH-HHHHHHHhhcccc-
Confidence 45899999999999998888877765554433333322 1111 1122 23466666553 2222221111100
Q ss_pred cccccccCCCCCCCCCcccccchHHHHhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhh
Q 006897 560 ECFSWQKYNNVDGDHFSKCLLTGNDVLKSRGLEKDTRWVNVGVMLAFFLFYRVLCWIILSRR 621 (627)
Q Consensus 560 ~C~~~~~~~~~~~~~~~~c~~~G~~~L~~~~~~~~~~w~~~~il~~~~~~~~~l~~~~L~~~ 621 (627)
.....|.++++++++.+++.++++..+++|
T Consensus 246 --------------------------------~~~~~~~~~~~~~~~~~v~l~la~~~F~rr 275 (277)
T PF12679_consen 246 --------------------------------VWLSTWPSLLILLAYTLVFLALAYYRFQRR 275 (277)
T ss_pred --------------------------------chhHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 004467889999999999999999666554
|
|
| >KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.27 E-value=1.2e-06 Score=92.12 Aligned_cols=150 Identities=24% Similarity=0.317 Sum_probs=94.1
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEE--ECCccCC---Chhhhccc----------EEEEccCCCCCC
Q 006897 95 RDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSIT--VNCHQIK---KPAQLRKI----------CGFVAQEDNLLP 159 (627)
Q Consensus 95 ~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~--i~g~~~~---~~~~~r~~----------ig~v~Q~~~l~~ 159 (627)
.+|++.+++|.||-||||-+++++|.++|.- |.-. .++.++. ...++... .-.=||.-..+|
T Consensus 98 rpg~vlglvgtngigkstAlkilagk~kpnl---g~~~~pp~w~~il~~frgselq~yftk~le~~lk~~~kpQyvd~ip 174 (592)
T KOG0063|consen 98 RPGQVLGLVGTNGIGKSTALKILAGKQKPNL---GRYDNPPDWQEILTYFRGSELQNYFTKILEDNLKAIIKPQYVDQIP 174 (592)
T ss_pred CcchhccccccCcccHHHHHHHHhCCCCCCC---CCCCCCcchHHHhhhhhhHHHhhhhhhhccccccCcCChHHHHHHH
Confidence 5799999999999999999999999999863 2110 0011110 00111100 001122111111
Q ss_pred C---CCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCcccc----CCcCCccccC------------------CCCC
Q 006897 160 L---LTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVA----GSFVGDEENR------------------GISG 214 (627)
Q Consensus 160 ~---lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~----~~~~gGe~qr------------------Ptsg 214 (627)
. .+|.++|. +...++..+++++.+.|+... +.++|||.|| |.+-
T Consensus 175 r~~k~~v~~~l~-----------~~~~r~~~~~~~~~~~L~~~~~re~~~lsggelqrfaia~~~vq~advyMFDEpSsY 243 (592)
T KOG0063|consen 175 RAVKGTVGSLLD-----------RKDERDNKEEVCDQLDLNNLLDREVEQLSGGELQRFAIAMVCVQKADVYMFDEPSSY 243 (592)
T ss_pred HHHHHHHHHHHH-----------HHhhcccHHHHHHHHHHhhHHHhhhhhcccchhhhhhhhhhhhhhcceeEecCCccc
Confidence 1 13333322 122233456677777776544 4567998888 8899
Q ss_pred CCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeec
Q 006897 215 LDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILS 260 (627)
Q Consensus 215 LD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~ 260 (627)
||...+..--..++.+.. .+.=||++.||++. +.-+.|-+.+|.
T Consensus 244 LDVKQRLkaA~~IRsl~~-p~~YiIVVEHDLsV-LDylSDFiCcLY 287 (592)
T KOG0063|consen 244 LDVKQRLKAAITIRSLIN-PDRYIIVVEHDLSV-LDYLSDFICCLY 287 (592)
T ss_pred chHHHhhhHHHHHHHhhC-CCCeEEEEEeechH-HHhhhcceeEEe
Confidence 999999999999999976 47889999999983 444678777775
|
|
| >COG1682 TagG ABC-type polysaccharide/polyol phosphate export systems, permease component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=98.22 E-value=0.00092 Score=68.44 Aligned_cols=240 Identities=14% Similarity=0.120 Sum_probs=145.7
Q ss_pred cHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHHHHHHhhccCCCCh---hhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006897 341 LILYEIMVLCSRFWKIIYRTKQL-FLARTMQALVGGFGLGSVYVRVRKDE---AGVAERLGLFAFSLSFLLSSTVEALPI 416 (627)
Q Consensus 341 ~~~~q~~~l~~R~~~~~~Rd~~~-~~~r~~~~~~~~l~~G~~f~~~~~~~---~~~~~~~g~~ff~~~~~~~~~~~~i~~ 416 (627)
..++....|.+|+++.-+|+... .+--++..+++.++.+.+|-.+-... --..--.|.+.+.. ...+.......
T Consensus 15 ~~~~li~~L~~~eik~Ryr~s~LG~~W~~l~P~~~~~~~~~vf~~l~~~~~~~~~~~l~~G~~~w~f--~~~~i~~~~~s 92 (263)
T COG1682 15 KYRRLIGALVKREIKTRYRRSVLGYLWSLLNPLLMILVYTLVFGALLRSPGLNFLAYLLAGLILWFF--FSEAISEGAGS 92 (263)
T ss_pred HHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHH--HHHHHHhHHHH
Confidence 34667889999999998887632 12233444444444444443332211 11222223221111 11111222233
Q ss_pred HHHhhHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006897 417 YLQERRVLMKEASREAYRISSYLIANTIVFLPFLFVVSLLFAIPVYWIVGLNPSIEAFVFFIFVVWLIVLMASSLVLFLS 496 (627)
Q Consensus 417 ~~~er~v~~rE~~~~~Y~~~~y~la~~l~~lp~~~~~~~~f~~i~Y~~~gl~~~~~~f~~f~~~~~l~~~~~~s~~~~i~ 496 (627)
+.....++.|- -.++..+.+++++.++-..++..++....+-+.-+.+ ...+......+.+..+.+.++|+++|
T Consensus 93 ~~~n~~li~k~----~~p~~~~~~~~~~~~~~~~~i~~iiil~~~i~~~~~~--s~~~l~~~~~l~~l~l~~~g~~l~~a 166 (263)
T COG1682 93 VVANAALIKKI----NFPPLILPVARTLSRLFNFLIHLIIILIFLIILGVEP--SWHWLLLLPALLLLILFSVGLGLILA 166 (263)
T ss_pred hhhhHHHHhCC----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC--cHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444332 2489999999999998887777666655555555544 34455566677777777788888888
Q ss_pred HhcCCHHHHHHHHHHHHHHHHHhhccccCCCCCcchhhhhhhhchhHHHHHHHHHHHhCCCCccccccccCCCCCCCCCc
Q 006897 497 AISPDFISGNSLICTVLGAFFLFSGYFIPKEYIPKYWIFMYYISLYRYPLDSLLTNEYWSARGECFSWQKYNNVDGDHFS 576 (627)
Q Consensus 497 ~~~~~~~~a~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~W~~yiSp~~Y~~~~l~~nef~~~~~~C~~~~~~~~~~~~~~~ 576 (627)
.++.-+.=-.-+.+.++-+++..+|.+-+.+.+|..++|+.++||+.+-.|.+=..-+.+..
T Consensus 167 ~l~v~fRD~~~i~~~v~~~~f~~sPIi~~~~~~p~~~~~~~~~NP~~~iie~~R~~~~~~~~------------------ 228 (263)
T COG1682 167 SLGVRFRDLGQILGVVLQLLFFLSPIIYPVSNLPEQLRELVLLNPLTHIIESFRAPLLGGDV------------------ 228 (263)
T ss_pred hHhhhcccHHHHHHHHHHHHHHhCceeeehhhccHHHHHHHHHCcHHHHHHHHHHHHhCCCc------------------
Confidence 87655443334455566678888999999999999999999999999999987554443321
Q ss_pred ccccchHHHHhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 006897 577 KCLLTGNDVLKSRGLEKDTRWVNVGVMLAFFLFYRVLCWIILSRRASK 624 (627)
Q Consensus 577 ~c~~~G~~~L~~~~~~~~~~w~~~~il~~~~~~~~~l~~~~L~~~~~~ 624 (627)
..+.+....+++.++..+++++..++.+|+
T Consensus 229 ------------------~~~~~~~~~~~~~li~l~vg~~~~~~~~~~ 258 (263)
T COG1682 229 ------------------PDLHLLVYILLLTLILLFVGLLLFRKFRKR 258 (263)
T ss_pred ------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 023345555556666667777777666554
|
|
| >PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=98.21 E-value=1e-06 Score=96.81 Aligned_cols=92 Identities=14% Similarity=0.183 Sum_probs=62.8
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCccCCChhhhcccEEEEccCCCCCCCCCHH
Q 006897 85 HILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKKPAQLRKICGFVAQEDNLLPLLTVK 164 (627)
Q Consensus 85 ~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~~~~~~~~r~~ig~v~Q~~~l~~~lTV~ 164 (627)
.++++.+..+++|++++++||||+||||++..|++.+.... |. ++|++|.+|. ...++.
T Consensus 244 ~~~~~~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~---G~---------------~kV~LI~~Dt---~RigA~ 302 (484)
T PRK06995 244 PVLDSEDALLDRGGVFALMGPTGVGKTTTTAKLAARCVMRH---GA---------------SKVALLTTDS---YRIGGH 302 (484)
T ss_pred hhccCccccccCCcEEEEECCCCccHHHHHHHHHHHHHHhc---CC---------------CeEEEEeCCc---cchhHH
Confidence 35677788889999999999999999999999998764321 21 2478888876 346899
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccc
Q 006897 165 ETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHV 199 (627)
Q Consensus 165 e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~ 199 (627)
|+|.+.+.... .+.....+..+...+..++.+.
T Consensus 303 EQLr~~AeilG--Vpv~~~~~~~Dl~~aL~~L~d~ 335 (484)
T PRK06995 303 EQLRIYGKILG--VPVHAVKDAADLRLALSELRNK 335 (484)
T ss_pred HHHHHHHHHhC--CCeeccCCchhHHHHHHhccCC
Confidence 99998765432 2222222233344455566544
|
|
| >PRK01889 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=98.19 E-value=2.9e-06 Score=90.89 Aligned_cols=136 Identities=15% Similarity=0.107 Sum_probs=81.7
Q ss_pred eeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCccCCChhhhcccEEEEccCCCCCCCCCHHHH
Q 006897 87 LKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKKPAQLRKICGFVAQEDNLLPLLTVKET 166 (627)
Q Consensus 87 L~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~~~~~~~~r~~ig~v~Q~~~l~~~lTV~e~ 166 (627)
++.+.-.+++|++++|+|+||+|||||++.|+|..++. .|+|.+++.... ....++.+++++|+..++++ ....+
T Consensus 185 l~~L~~~L~~g~~~~lvG~sgvGKStLin~L~g~~~~~---~G~i~~~~~~g~-~tt~~~~l~~l~~~~~l~Dt-pG~~~ 259 (356)
T PRK01889 185 LDVLAAWLSGGKTVALLGSSGVGKSTLVNALLGEEVQK---TGAVREDDSKGR-HTTTHRELHPLPSGGLLIDT-PGMRE 259 (356)
T ss_pred HHHHHHHhhcCCEEEEECCCCccHHHHHHHHHHhcccc---eeeEEECCCCCc-chhhhccEEEecCCCeecCC-Cchhh
Confidence 45555567899999999999999999999999998875 399998775422 22345679999998877754 55555
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccCCcCCccc-cC--CCCCCCHHHHHHHHHHHHHHH
Q 006897 167 LMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAGSFVGDEE-NR--GISGLDSTSALQVIELLASMA 231 (627)
Q Consensus 167 l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~gGe~-qr--PtsgLD~~~~~~i~~~L~~l~ 231 (627)
+.+... ...-......+.++.+.+...+|.+..--|-. +. -..+|+..--....++++++.
T Consensus 260 ~~l~~~----~~~l~~~f~~~~~~~~~c~f~~c~h~~E~~c~v~~a~~~~~i~~~r~~~Y~~l~~e~~ 323 (356)
T PRK01889 260 LQLWDA----EDGVEETFSDIEELAAQCRFRDCAHEAEPGCAVQAAIENGELDERRLQSYRKLQREQA 323 (356)
T ss_pred hcccCc----hhhHHHhHHHHHHHHccCCCCCCCCCCCCCChHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 554210 00001112234445555555555443211100 00 123466555555556666654
|
|
| >PRK08149 ATP synthase SpaL; Validated | Back alignment and domain information |
|---|
Probab=98.19 E-value=2.1e-06 Score=92.96 Aligned_cols=73 Identities=14% Similarity=0.275 Sum_probs=57.4
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCccCCC--hh----hhcccEEEEccCCC
Q 006897 83 PLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKK--PA----QLRKICGFVAQEDN 156 (627)
Q Consensus 83 ~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~~~~--~~----~~r~~ig~v~Q~~~ 156 (627)
+.++++++ +++.+||+++|+|+||+|||||+++|++...++....|.|..+|+++.. .+ ..++++++|+....
T Consensus 138 Gi~aid~l-l~i~~Gq~i~I~G~sG~GKTTLl~~i~~~~~~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd 216 (428)
T PRK08149 138 GVRAIDGL-LTCGVGQRMGIFASAGCGKTSLMNMLIEHSEADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSD 216 (428)
T ss_pred CcEEEeee-eeEecCCEEEEECCCCCChhHHHHHHhcCCCCCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCC
Confidence 35699999 9999999999999999999999999999887754334888888887632 11 12367888887543
|
|
| >COG3910 Predicted ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.17 E-value=1.1e-05 Score=76.57 Aligned_cols=50 Identities=16% Similarity=0.369 Sum_probs=39.2
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHH-hhhheeecCCe
Q 006897 211 GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQY-ISKFLILSRGS 263 (627)
Q Consensus 211 PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~-~D~i~vL~~G~ 263 (627)
|-++|.|.-+.+++..|+++++. |.-+||.||.|- +..+ -.+|+-++.+.
T Consensus 155 PEa~LSp~RQlella~l~~la~s-GaQ~IiATHSPi--LlAiP~A~I~~~~~~g 205 (233)
T COG3910 155 PEAALSPSRQLELLAILRDLADS-GAQIIIATHSPI--LLAIPGAEIYEISESG 205 (233)
T ss_pred ccccCCHHHHHHHHHHHHHHHhc-CCeEEEEecChh--heeCCCcEEEEEecCC
Confidence 88999999999999999999874 889999999874 3332 23556566554
|
|
| >PF13555 AAA_29: P-loop containing region of AAA domain | Back alignment and domain information |
|---|
Probab=98.16 E-value=2.5e-06 Score=66.87 Aligned_cols=37 Identities=24% Similarity=0.492 Sum_probs=30.2
Q ss_pred eeceEEEEeC-CeEEEEECCCCCcHHHHHHHHHcCCCC
Q 006897 87 LKSVSFEARD-SEILAVVGPSGTGKSSLLRIISGRVRD 123 (627)
Q Consensus 87 L~~vsl~i~~-Ge~~aIiGpnGsGKSTLl~~L~Gl~~~ 123 (627)
.++-++++.+ |+++.|.||||||||||+.+|.=.+-+
T Consensus 12 f~~~~~~~~~~g~~tli~G~nGsGKSTllDAi~~~L~~ 49 (62)
T PF13555_consen 12 FDGETIDFDPRGDVTLITGPNGSGKSTLLDAIQTVLYG 49 (62)
T ss_pred cCCeEEeecCCCcEEEEECCCCCCHHHHHHHHHHHHcC
Confidence 4567778876 579999999999999999999755543
|
|
| >PF06422 PDR_CDR: CDR ABC transporter; InterPro: IPR010929 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems | Back alignment and domain information |
|---|
Probab=98.14 E-value=4e-06 Score=73.21 Aligned_cols=49 Identities=29% Similarity=0.594 Sum_probs=43.6
Q ss_pred cccccchHHHHh-hcCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 006897 576 SKCLLTGNDVLK-SRGLEKDTRWVNVGVMLAFFLFYRVLCWIILSRRASK 624 (627)
Q Consensus 576 ~~c~~~G~~~L~-~~~~~~~~~w~~~~il~~~~~~~~~l~~~~L~~~~~~ 624 (627)
+...++|+++|+ +|++..+++|+|++|+++|+++|.++.++++.+.+..
T Consensus 27 G~~~V~G~~YL~~~y~y~~sh~WRN~GIli~f~i~f~~~~~~~~e~~~~~ 76 (103)
T PF06422_consen 27 GSTYVSGDDYLEESYGYSYSHRWRNFGILIAFWIFFIVLTLLATEFIKFE 76 (103)
T ss_pred CccEEeHHHHHhhhccccccchhhhHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 445578999997 7999999999999999999999999999999887643
|
ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). In yeast, the PDR and CDR ABC transporters display extensive sequence homology, and confer resistance to several anti-fungal compounds by actively transporting their substrates out of the cell. These transporters have two homologous halves, each with an N-terminal intracellular hydrophilic region that contains an ATP-binding site, followed by a C-terminal membrane-associated region containing six transmembrane segments []. This entry represents a domain of the PDR/CDR ABC transporter comprising extracellular loop 3, transmembrane segment 6 and a linker region.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0016021 integral to membrane |
| >TIGR00235 udk uridine kinase | Back alignment and domain information |
|---|
Probab=98.09 E-value=1.3e-06 Score=86.30 Aligned_cols=29 Identities=28% Similarity=0.459 Sum_probs=26.8
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCCC
Q 006897 95 RDSEILAVVGPSGTGKSSLLRIISGRVRD 123 (627)
Q Consensus 95 ~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~ 123 (627)
++|++++|+||||||||||++.|++++++
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~~ 32 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLGK 32 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 57999999999999999999999998764
|
Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below |
| >TIGR00767 rho transcription termination factor Rho | Back alignment and domain information |
|---|
Probab=98.05 E-value=5.7e-06 Score=88.33 Aligned_cols=54 Identities=20% Similarity=0.223 Sum_probs=47.1
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceee-----------ceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILK-----------SVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRD 123 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~-----------~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~ 123 (627)
.++|+||++.|++. +.+|+ |+++.|.+|+.++|+||+|+|||||++.|+..+..
T Consensus 130 ri~Fe~LTf~YP~e--------------r~~Le~~~~~~~~R~id~~~pig~Gq~~~IvG~~g~GKTtL~~~i~~~I~~ 194 (415)
T TIGR00767 130 RVLFENLTPLYPNE--------------RLRLETSTEDLSTRVLDLFAPIGKGQRGLIVAPPKAGKTVLLQKIAQAITR 194 (415)
T ss_pred CeEEEEeeecCCCc--------------cceeecCccccceeeeeeEEEeCCCCEEEEECCCCCChhHHHHHHHHhhcc
Confidence 58999999999532 35786 99999999999999999999999999999987643
|
Members of this family differ in the specificity of RNA binding. |
| >PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed | Back alignment and domain information |
|---|
Probab=98.05 E-value=6.8e-06 Score=82.64 Aligned_cols=75 Identities=15% Similarity=0.306 Sum_probs=50.9
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccce----EEECCccCCChhhhcccEEEEccCCCCCCCCCHHHHHHH
Q 006897 94 ARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRS----ITVNCHQIKKPAQLRKICGFVAQEDNLLPLLTVKETLMF 169 (627)
Q Consensus 94 i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~----i~i~g~~~~~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~ 169 (627)
-.+..++||.||||||||||.+.|++++++.. |. +.+++.. .+...++..|++++... ...+++.+.+.+
T Consensus 30 ~~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~---g~~~v~i~~D~~~--~~~~~~~~~g~~~~~~~-~~~~d~~~~~~~ 103 (229)
T PRK09270 30 PQRRTIVGIAGPPGAGKSTLAEFLEALLQQDG---ELPAIQVPMDGFH--LDNAVLDAHGLRPRKGA-PETFDVAGLAAL 103 (229)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhhhcc---CCceEEEeccccc--CCHHHHHhcccccccCC-CCCCCHHHHHHH
Confidence 34578999999999999999999999998764 66 4444432 12233344677776433 355677777766
Q ss_pred HHHhc
Q 006897 170 SANFR 174 (627)
Q Consensus 170 ~~~~~ 174 (627)
...++
T Consensus 104 l~~l~ 108 (229)
T PRK09270 104 LRRLR 108 (229)
T ss_pred HHHHH
Confidence 54443
|
|
| >PRK10078 ribose 1,5-bisphosphokinase; Provisional | Back alignment and domain information |
|---|
Probab=98.03 E-value=4.8e-06 Score=80.89 Aligned_cols=52 Identities=31% Similarity=0.503 Sum_probs=38.1
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCccCCCh--hhhcccEEEEccC
Q 006897 97 SEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKKP--AQLRKICGFVAQE 154 (627)
Q Consensus 97 Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~~~~~--~~~r~~ig~v~Q~ 154 (627)
|++++|+||||||||||+++|++...+ .+.+++..+... ...+..+++++|+
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQREQT------QLLVAHRYITRPASAGSENHIALSEQE 55 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCCC------eEEEcCEECCCccchhHHhheeEcHHH
Confidence 789999999999999999999998643 355555543221 2344567788776
|
|
| >PRK10416 signal recognition particle-docking protein FtsY; Provisional | Back alignment and domain information |
|---|
Probab=98.02 E-value=4.4e-06 Score=87.89 Aligned_cols=74 Identities=15% Similarity=0.230 Sum_probs=55.8
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCccCCCh--------hhhcccEEEEccCCCCCCCCCHHHH
Q 006897 95 RDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKKP--------AQLRKICGFVAQEDNLLPLLTVKET 166 (627)
Q Consensus 95 ~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~~~~~--------~~~r~~ig~v~Q~~~l~~~lTV~e~ 166 (627)
++|++++++||||+||||++..|++.+.+.+ ++|.+.+.|.... ...++.+.+++|.....|..++.++
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g---~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~ 188 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQG---KKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDA 188 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcC---CeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHH
Confidence 5799999999999999999999999987643 7888877664211 1234568999987666666677788
Q ss_pred HHHHH
Q 006897 167 LMFSA 171 (627)
Q Consensus 167 l~~~~ 171 (627)
+....
T Consensus 189 l~~~~ 193 (318)
T PRK10416 189 IQAAK 193 (318)
T ss_pred HHHHH
Confidence 76543
|
|
| >TIGR00554 panK_bact pantothenate kinase, bacterial type | Back alignment and domain information |
|---|
Probab=98.01 E-value=5.5e-06 Score=85.76 Aligned_cols=77 Identities=16% Similarity=0.257 Sum_probs=51.1
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCccCC-ChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhc
Q 006897 96 DSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIK-KPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFR 174 (627)
Q Consensus 96 ~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~~~-~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~ 174 (627)
.-.++||.||||||||||+++|.+++.... ..|.+.+.+.+-. .....++..++. |+..+.+.+++.+.+.+-..++
T Consensus 61 ~p~IIGIaG~~GSGKSTlar~L~~ll~~~~-~~g~V~vi~~D~f~~~~~~l~~~g~~-~~~g~P~s~D~~~l~~~L~~Lk 138 (290)
T TIGR00554 61 IPYIISIAGSVAVGKSTTARILQALLSRWP-EHRKVELITTDGFLHPNQVLKERNLM-KKKGFPESYDMHRLVKFLSDLK 138 (290)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHhhcC-CCCceEEEecccccccHHHHHHcCCc-cccCCChhccHHHHHHHHHHHH
Confidence 346999999999999999999999986211 1267666444321 122233445654 6666677788888887765443
|
Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model. |
| >PRK13830 conjugal transfer protein TrbE; Provisional | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.00013 Score=86.41 Aligned_cols=58 Identities=19% Similarity=0.114 Sum_probs=49.3
Q ss_pred CCCCC-CHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHH---------HHhhhheeecCCeEEeeCCH
Q 006897 211 GISGL-DSTSALQVIELLASMAKAKQRTVVLSIHQPSYRIL---------QYISKFLILSRGSVVHYGSL 270 (627)
Q Consensus 211 PtsgL-D~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~---------~~~D~i~vL~~G~iv~~G~~ 270 (627)
|..+| |+..+..+.+.++++++ .|.+++++||+++. +. +.||+.++|.+|++...|..
T Consensus 661 ~~~~L~d~~~~~~i~~~lk~~RK-~~~~vil~Tq~~~d-~~~s~~a~~i~~~~~t~i~L~n~~a~~~~~~ 728 (818)
T PRK13830 661 AWLMLGHPVFRDKIREWLKVLRK-ANCAVVLATQSISD-AERSGIIDVLKESCPTKICLPNGAAREPGTR 728 (818)
T ss_pred chhhcCCHHHHHHHHHHHHHHHH-cCCEEEEEeCCHHH-HhcCchHHHHHhcCCeEEECCCccccccchH
Confidence 77899 79999999999999976 58899999999983 54 57999999999998776644
|
|
| >PF12698 ABC2_membrane_3: ABC-2 family transporter protein; PDB: 2P0S_B 3CNI_A | Back alignment and domain information |
|---|
Probab=97.96 E-value=1.6e-06 Score=90.81 Aligned_cols=129 Identities=16% Similarity=0.289 Sum_probs=0.0
Q ss_pred HHHhhHH--HHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHhhhhhhcccc---ccccHHHHHHHHHHHHHHHHHHHHH
Q 006897 417 YLQERRV--LMKEASREAYRISSYLIANTIVFLPFLFVVSLLFAIPVYWIVG---LNPSIEAFVFFIFVVWLIVLMASSL 491 (627)
Q Consensus 417 ~~~er~v--~~rE~~~~~Y~~~~y~la~~l~~lp~~~~~~~~f~~i~Y~~~g---l~~~~~~f~~f~~~~~l~~~~~~s~ 491 (627)
..+||.- ..|-+.+| .+...|++++++..+...++..+++.++ +.| ++.. .++..++.+++..++..++
T Consensus 182 i~~ek~~~~~~~l~~~~-~~~~~~~~~~~l~~~~~~~i~~~i~~~i---~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~ 255 (344)
T PF12698_consen 182 IVEEKESGTRERLLSSG-VSPWSYWLSKFLAYFLVSLIQSLIIIII---IFGISGIPFG--NFLLLLLLLLLFSLAFISF 255 (344)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhhHhhhhhhHhhhccc-CCHHHHHHHHHHHHhhHHHHHHHHHHHH---HhccccCccc--chHHHHHHHHHHHHHHHHH
Confidence 3455544 33333455 4888999999999999999888877764 334 4444 4555667778888889999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhhccccCCCCCcchhhhhhhhchhHHHHHHHHH
Q 006897 492 VLFLSAISPDFISGNSLICTVLGAFFLFSGYFIPKEYIPKYWIFMYYISLYRYPLDSLLT 551 (627)
Q Consensus 492 ~~~i~~~~~~~~~a~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~W~~yiSp~~Y~~~~l~~ 551 (627)
+.+++.++++...|..+++++..+++.++|.+.+.+++|.+++|+.++.|..|..+++..
T Consensus 256 ~~~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~P~~~~~~~~~~ 315 (344)
T PF12698_consen 256 GFLISSFFKNSSTAISVASIIILLLSFLSGGFFPLSSLPSFLQWISSFLPFYWFIQGLRN 315 (344)
T ss_dssp ------------------------------------------------------------
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHhhHHHHHHHHHH
Confidence 999999999999998888887776777777777788999999999999999998776643
|
|
| >TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase | Back alignment and domain information |
|---|
Probab=97.96 E-value=1.4e-05 Score=87.20 Aligned_cols=77 Identities=13% Similarity=0.219 Sum_probs=55.7
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCccCCChhhh--------cccEEEEccC
Q 006897 83 PLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKKPAQL--------RKICGFVAQE 154 (627)
Q Consensus 83 ~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~~~~~~~~--------r~~ig~v~Q~ 154 (627)
...+++++ +.+.+|+.++|+|+||+|||||+++|+|..+++. |.+...|.+-.+..++ ....+.+.++
T Consensus 132 G~~~id~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~~---~vi~~iG~~~~ev~~~~~~~~~~~~~~~tvvv~~ 207 (422)
T TIGR02546 132 GVRAIDGL-LTCGEGQRIGIFAGAGVGKSTLLGMIARGASADV---NVIALIGERGREVREFIEHHLGEEGRKRSVLVVS 207 (422)
T ss_pred Cceeehhh-ccccCCCEEEEECCCCCChHHHHHHHhCCCCCCE---EEEEEEccCCcCHHHHHHHHhccccccceEEEec
Confidence 45699999 9999999999999999999999999999988753 7776654432211111 1235677777
Q ss_pred CCCCCCCCH
Q 006897 155 DNLLPLLTV 163 (627)
Q Consensus 155 ~~l~~~lTV 163 (627)
....|.++.
T Consensus 208 ~s~~p~~~r 216 (422)
T TIGR02546 208 TSDRPSLER 216 (422)
T ss_pred cccCCHHHH
Confidence 666655433
|
|
| >cd01131 PilT Pilus retraction ATPase PilT | Back alignment and domain information |
|---|
Probab=97.95 E-value=6.1e-05 Score=74.02 Aligned_cols=120 Identities=18% Similarity=0.232 Sum_probs=65.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCccCCChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGM 178 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~~~~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~ 178 (627)
++.|.||+||||||+++.|.+.+.+.. .|.|.....++ + .......+++.|...-....+..+.+.
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~--~~~i~t~e~~~-E-~~~~~~~~~i~q~~vg~~~~~~~~~i~---------- 68 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNK--THHILTIEDPI-E-FVHESKRSLINQREVGLDTLSFENALK---------- 68 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcC--CcEEEEEcCCc-c-ccccCccceeeecccCCCccCHHHHHH----------
Confidence 789999999999999999988876432 26666544442 1 011122345555321111112222221
Q ss_pred CHHHHHHHHHHHHHHcCCccccCCcCCccccCCCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhhee
Q 006897 179 SHKEKEDRVESLMDELGLTHVAGSFVGDEENRGISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLI 258 (627)
Q Consensus 179 ~~~~~~~~v~~~l~~lgL~~~~~~~~gGe~qrPtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~v 258 (627)
..+ .. ..+..+-||-+ |+.....+ + +.+. .|..++.++|..+ ..+..||++.
T Consensus 69 ----------~aL---r~--~pd~ii~gEir------d~e~~~~~---l-~~a~-~G~~v~~t~Ha~~--~~~~~~Rl~~ 120 (198)
T cd01131 69 ----------AAL---RQ--DPDVILVGEMR------DLETIRLA---L-TAAE-TGHLVMSTLHTNS--AAKTIDRIID 120 (198)
T ss_pred ----------HHh---cC--CcCEEEEcCCC------CHHHHHHH---H-HHHH-cCCEEEEEecCCc--HHHHHhHHHh
Confidence 111 11 12222334422 54433322 3 3343 5889999999987 3577899987
Q ss_pred ec
Q 006897 259 LS 260 (627)
Q Consensus 259 L~ 260 (627)
+.
T Consensus 121 l~ 122 (198)
T cd01131 121 VF 122 (198)
T ss_pred hc
Confidence 74
|
PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility. |
| >TIGR00416 sms DNA repair protein RadA | Back alignment and domain information |
|---|
Probab=97.95 E-value=1.3e-05 Score=88.33 Aligned_cols=151 Identities=14% Similarity=0.145 Sum_probs=84.4
Q ss_pred eeece-EEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCccCCChhhhc---ccEEEEccCCCCCCCC
Q 006897 86 ILKSV-SFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKKPAQLR---KICGFVAQEDNLLPLL 161 (627)
Q Consensus 86 iL~~v-sl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~~~~~~~~r---~~ig~v~Q~~~l~~~l 161 (627)
-||.+ ..-+.+|+++.|.|++|+|||||+..++......+ ..-+++.+++- ..+++ +++++..++..++...
T Consensus 82 ~LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g--~kvlYvs~EEs--~~qi~~ra~rlg~~~~~l~~~~e~ 157 (454)
T TIGR00416 82 ELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQ--MKVLYVSGEES--LQQIKMRAIRLGLPEPNLYVLSET 157 (454)
T ss_pred HHHHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcC--CcEEEEECcCC--HHHHHHHHHHcCCChHHeEEcCCC
Confidence 46665 35799999999999999999999999987654332 12356666542 12221 2345433322222211
Q ss_pred CHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCcc-ccCCcC---CccccCCCCCCCHHHHHHHHHHHHHHHHcCCCE
Q 006897 162 TVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTH-VAGSFV---GDEENRGISGLDSTSALQVIELLASMAKAKQRT 237 (627)
Q Consensus 162 TV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~~---gGe~qrPtsgLD~~~~~~i~~~L~~l~~~~g~T 237 (627)
++ +.+.+.++..+.+- +.|... -.+. ..+.=+....++++..|.+++++.|.|
T Consensus 158 ~~---------------------~~I~~~i~~~~~~~vVIDSIq~l~~~~~--~~~~g~~~q~r~~~~~L~~~ak~~giT 214 (454)
T TIGR00416 158 NW---------------------EQICANIEEENPQACVIDSIQTLYSPDI--SSAPGSVSQVRECTAELMRLAKTRGIA 214 (454)
T ss_pred CH---------------------HHHHHHHHhcCCcEEEEecchhhccccc--ccCCCCHHHHHHHHHHHHHHHHHhCCE
Confidence 11 12222233322211 111110 0000 000002234566777788888889999
Q ss_pred EEEEccCccH-------HHHHHhhhheeecCCe
Q 006897 238 VVLSIHQPSY-------RILQYISKFLILSRGS 263 (627)
Q Consensus 238 ii~~tH~~~~-------~i~~~~D~i~vL~~G~ 263 (627)
+++++|.... .+.+++|.|+.|+.++
T Consensus 215 vllt~hvtkeg~~aG~~~le~lvD~VI~Le~~~ 247 (454)
T TIGR00416 215 IFIVGHVTKEGSIAGPKVLEHMVDTVLYFEGDR 247 (454)
T ss_pred EEEEeccccCCccCCcccEeeeceEEEEEeccC
Confidence 9999996431 1567899999998654
|
The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)). |
| >cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein | Back alignment and domain information |
|---|
Probab=97.94 E-value=1.3e-05 Score=84.20 Aligned_cols=49 Identities=20% Similarity=0.332 Sum_probs=42.7
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCc
Q 006897 84 LHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCH 136 (627)
Q Consensus 84 ~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~ 136 (627)
.++++++ +.+.+||.++|+|+||+|||||+++|+|...++. |.+..-|+
T Consensus 57 i~aiD~l-~~i~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~---~vi~~iGe 105 (326)
T cd01136 57 VRAIDGL-LTVGKGQRLGIFAGSGVGKSTLLGMIARGTTADV---NVIALIGE 105 (326)
T ss_pred cEEEeee-eEEcCCcEEEEECCCCCChHHHHHHHhCCCCCCE---EEEEEEec
Confidence 4689999 9999999999999999999999999999988753 66655553
|
This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway. |
| >TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN | Back alignment and domain information |
|---|
Probab=97.93 E-value=2.7e-05 Score=75.01 Aligned_cols=27 Identities=41% Similarity=0.727 Sum_probs=24.5
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCC
Q 006897 97 SEILAVVGPSGTGKSSLLRIISGRVRD 123 (627)
Q Consensus 97 Ge~~aIiGpnGsGKSTLl~~L~Gl~~~ 123 (627)
|++++|+||||||||||++.|++.+.+
T Consensus 1 ~~~~~i~G~sGsGKttl~~~l~~~~~~ 27 (179)
T TIGR02322 1 GRLIYVVGPSGAGKDTLLDYARARLAG 27 (179)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCc
Confidence 678999999999999999999998654
|
Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP. |
| >PRK07594 type III secretion system ATPase SsaN; Validated | Back alignment and domain information |
|---|
Probab=97.93 E-value=9.9e-06 Score=87.99 Aligned_cols=64 Identities=13% Similarity=0.279 Sum_probs=51.8
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
.++.++++..+. ...++++++ +++.+||.++|+|+||+|||||+++|+|..+++. |.+.+.|
T Consensus 129 ~~~r~~v~~~l~--------------tGi~aID~l-l~i~~GqrigI~G~sG~GKSTLL~~I~~~~~~d~---~vi~~iG 190 (433)
T PRK07594 129 AMVRQPITQPLM--------------TGIRAIDSV-ATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADS---NVLVLIG 190 (433)
T ss_pred ceeccCHhheeC--------------CCceeeeee-eecCCCCEEEEECCCCCCccHHHHHhcCCCCCCE---EEEEEEC
Confidence 356666666653 235699999 9999999999999999999999999999988753 7777666
Q ss_pred cc
Q 006897 136 HQ 137 (627)
Q Consensus 136 ~~ 137 (627)
+.
T Consensus 191 eR 192 (433)
T PRK07594 191 ER 192 (433)
T ss_pred CC
Confidence 54
|
|
| >PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed | Back alignment and domain information |
|---|
Probab=97.93 E-value=5.4e-05 Score=88.86 Aligned_cols=54 Identities=13% Similarity=0.100 Sum_probs=38.1
Q ss_pred CCCCCCHHHHHHHHH-HHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEee
Q 006897 211 GISGLDSTSALQVIE-LLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHY 267 (627)
Q Consensus 211 PtsgLD~~~~~~i~~-~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~ 267 (627)
|++|+|+.....+.. ++..+.+ .|.++|++||+++. ....+|+..+ .++.+.++
T Consensus 416 ~~~GtDp~eg~ala~aile~l~~-~~~~vIitTH~~el-~~~~~~~~~v-~~~~~~~d 470 (782)
T PRK00409 416 LGAGTDPDEGAALAISILEYLRK-RGAKIIATTHYKEL-KALMYNREGV-ENASVEFD 470 (782)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHH-CCCEEEEECChHHH-HHHHhcCCCe-EEEEEEEe
Confidence 889999999988865 5666654 58999999999763 3334454444 35566553
|
|
| >PRK07960 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=97.92 E-value=7.8e-06 Score=88.76 Aligned_cols=72 Identities=14% Similarity=0.177 Sum_probs=55.1
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCccCCCh-----hhhcccEEEEccCCC
Q 006897 84 LHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKKP-----AQLRKICGFVAQEDN 156 (627)
Q Consensus 84 ~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~~~~~-----~~~r~~ig~v~Q~~~ 156 (627)
.+++|.+ +++.+|++++|+|+||+|||||+++|+|+.+++....|.|..+|+++.+. ..-.+..++|+|+..
T Consensus 163 iraID~l-l~I~~Gqri~I~G~sG~GKTTLL~~Ia~~~~~d~iv~g~Igerg~ev~e~~~~~~~~~~~~~tvVv~~~a 239 (455)
T PRK07960 163 VRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTQADVIVVGLIGERGREVKDFIENILGAEGRARSVVIAAPA 239 (455)
T ss_pred ceeeeec-ccccCCcEEEEECCCCCCccHHHHHHhCCCCCCEEEEEEEEECCeEHHHHHHhhcCcCCCceEEEEEECC
Confidence 4567766 99999999999999999999999999999887633348898888876321 111245788888643
|
|
| >PRK15176 Vi polysaccharide export inner membrane protein VexB; Provisional | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.0077 Score=61.88 Aligned_cols=106 Identities=14% Similarity=0.101 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHHHHHhhccccCCCCCcchhhhhhhhchhHHHHHHHHHHHhCC
Q 006897 480 VVWLIVLMASSLVLFLSAI---SPDFISGNSLICTVLGAFFLFSGYFIPKEYIPKYWIFMYYISLYRYPLDSLLTNEYWS 556 (627)
Q Consensus 480 ~~~l~~~~~~s~~~~i~~~---~~~~~~a~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~W~~yiSp~~Y~~~~l~~nef~~ 556 (627)
.+++..+.+.++|+++|++ .+|.. -+.++++-+++-.+|.+-+.+.+|+.++|+.+.||+.+..|+.=..-+++
T Consensus 154 ~~ll~~l~~~glglils~l~v~~rDi~---~i~~~~l~~lf~~SpI~y~~~~vp~~~~~il~~NPl~~~ie~~R~~~~~~ 230 (264)
T PRK15176 154 GMVIAWLLGLSFGYFCDALSERFPLVY---KAVPVMLRPMFLISAVFYTANELPYSLLSIFSWNPLLHANEIVREGMFEG 230 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCccHH---HHHHHHHHHHHHHhhHhhhHHhCcHHHHHHHHHCcHHHHHHHHHHHHhcC
Confidence 3344555566777776666 45554 44556666788889988889999999999999999999999875544433
Q ss_pred CCccccccccCCCCCCCCCcccccchHHHHhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 006897 557 ARGECFSWQKYNNVDGDHFSKCLLTGNDVLKSRGLEKDTRWVNVGVMLAFFLFYRVLCWIILSRRASK 624 (627)
Q Consensus 557 ~~~~C~~~~~~~~~~~~~~~~c~~~G~~~L~~~~~~~~~~w~~~~il~~~~~~~~~l~~~~L~~~~~~ 624 (627)
.. ..|.++...+++.++..+++++..++.+++
T Consensus 231 ~~------------------------------------~~~~~~~~~~~~~~~~l~~G~~~~~~~~~~ 262 (264)
T PRK15176 231 YH------------------------------------SLYLEPFYPLAFSATLFLAGLIFHLICDTE 262 (264)
T ss_pred cC------------------------------------ccccChHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 11 112345667777778888887777766654
|
|
| >PLN02796 D-glycerate 3-kinase | Back alignment and domain information |
|---|
Probab=97.88 E-value=4.2e-06 Score=87.94 Aligned_cols=54 Identities=13% Similarity=0.244 Sum_probs=45.0
Q ss_pred ceeeceEEEE---eCCeE-----EEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCccC
Q 006897 85 HILKSVSFEA---RDSEI-----LAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQI 138 (627)
Q Consensus 85 ~iL~~vsl~i---~~Ge~-----~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~~ 138 (627)
.++++++..+ ++|+. +||.|+||||||||++.|.+++++.+...|.|.++|..+
T Consensus 80 ~il~~l~~~~~~~~~G~~~~pliIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDdfYL 141 (347)
T PLN02796 80 WCEDQLEAHRSKFKDGDEIPPLVIGISAPQGCGKTTLVFALVYLFNATGRRAASLSIDDFYL 141 (347)
T ss_pred HHHHHHHHHHhhhccCCCCCCEEEEEECCCCCcHHHHHHHHHHHhcccCCceeEEEECCccc
Confidence 4788999887 67876 999999999999999999999986533348888888764
|
|
| >TIGR02655 circ_KaiC circadian clock protein KaiC | Back alignment and domain information |
|---|
Probab=97.85 E-value=2.4e-06 Score=95.39 Aligned_cols=155 Identities=15% Similarity=0.172 Sum_probs=83.5
Q ss_pred ceeece-EEEEeCCeEEEEECCCCCcHHHHHHHH--HcCCCCCCCccceEEECCccCCChhhhc---ccEEEEccCCCCC
Q 006897 85 HILKSV-SFEARDSEILAVVGPSGTGKSSLLRII--SGRVRDQDFDPRSITVNCHQIKKPAQLR---KICGFVAQEDNLL 158 (627)
Q Consensus 85 ~iL~~v-sl~i~~Ge~~aIiGpnGsGKSTLl~~L--~Gl~~~~~~~~G~i~i~g~~~~~~~~~r---~~ig~v~Q~~~l~ 158 (627)
.-||.+ ..-+.+|..+.|.||+|||||||..-. .|..+..+ .-+++.... ++.+++ +..|+-.++..--
T Consensus 8 ~gLD~il~GGlp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge---~~lyvs~eE--~~~~l~~~~~~~G~~~~~~~~~ 82 (484)
T TIGR02655 8 EGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDE---PGVFVTFEE--SPQDIIKNARSFGWDLQKLVDE 82 (484)
T ss_pred hhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCC---CEEEEEEec--CHHHHHHHHHHcCCCHHHHhhc
Confidence 346775 567999999999999999999999876 45544222 344444332 222222 3355544421100
Q ss_pred CCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccC----CcCCccccC----CCC----CCC--HHHHHHHH
Q 006897 159 PLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAG----SFVGDEENR----GIS----GLD--STSALQVI 224 (627)
Q Consensus 159 ~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~----~~~gGe~qr----Pts----gLD--~~~~~~i~ 224 (627)
..+-+.+. . +. .....+++.+++++..+ ...+|++|| +.+ ..| ...++.+.
T Consensus 83 g~l~~~~~---~--------~~----~~~~~~~~~~~l~~~l~~i~~~ls~g~~qRVvIDSl~aL~~~~~~~~~~r~~l~ 147 (484)
T TIGR02655 83 GKLFILDA---S--------PD----PEGQDVVGGFDLSALIERINYAIRKYKAKRVSIDSVTAVFQQYDAVSVVRREIF 147 (484)
T ss_pred CceEEEec---C--------ch----hccccccccCCHHHHHHHHHHHHHHhCCcEEEEeehhHhhhhcCchHHHHHHHH
Confidence 00000000 0 00 00001112222222221 222566666 222 223 34677888
Q ss_pred HHHHHHHHcCCCEEEEEccCccHH-------H-HHHhhhheeec
Q 006897 225 ELLASMAKAKQRTVVLSIHQPSYR-------I-LQYISKFLILS 260 (627)
Q Consensus 225 ~~L~~l~~~~g~Tii~~tH~~~~~-------i-~~~~D~i~vL~ 260 (627)
++++.+++ .|+|+|+++|+++.. + ..+||.|+.|+
T Consensus 148 ~Li~~L~~-~g~TvLLtsh~~~~~~~~~~~~~~e~laDgVI~L~ 190 (484)
T TIGR02655 148 RLVARLKQ-IGVTTVMTTERIEEYGPIARYGVEEFVSDNVVILR 190 (484)
T ss_pred HHHHHHHH-CCCEEEEEecCcccccccccCCceeEeeeeEEEEE
Confidence 89988865 699999999987520 1 45789999886
|
Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. |
| >PTZ00132 GTP-binding nuclear protein Ran; Provisional | Back alignment and domain information |
|---|
Probab=97.82 E-value=4.8e-06 Score=82.67 Aligned_cols=25 Identities=32% Similarity=0.675 Sum_probs=21.6
Q ss_pred EEEEECCCCCcHHHHH-HHHHcCCCC
Q 006897 99 ILAVVGPSGTGKSSLL-RIISGRVRD 123 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl-~~L~Gl~~~ 123 (627)
.++|+|+||||||||+ +.+.|..++
T Consensus 11 kv~liG~~g~GKTtLi~~~~~~~~~~ 36 (215)
T PTZ00132 11 KLILVGDGGVGKTTFVKRHLTGEFEK 36 (215)
T ss_pred eEEEECCCCCCHHHHHHHHHhCCCCC
Confidence 4799999999999999 688887654
|
|
| >PRK09099 type III secretion system ATPase; Provisional | Back alignment and domain information |
|---|
Probab=97.82 E-value=2.4e-05 Score=85.31 Aligned_cols=51 Identities=16% Similarity=0.356 Sum_probs=45.1
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCcc
Q 006897 83 PLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQ 137 (627)
Q Consensus 83 ~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~ 137 (627)
...+++++ +.+.+|+.++|+|+||+|||||+++|+|..+++. |.+.+.|+.
T Consensus 150 Gi~~ID~l-~~i~~Gq~~~I~G~sG~GKTtLl~~ia~~~~~d~---~vi~~iGer 200 (441)
T PRK09099 150 GVRIVDGL-MTLGEGQRMGIFAPAGVGKSTLMGMFARGTQCDV---NVIALIGER 200 (441)
T ss_pred Cceeccce-eeecCCCEEEEECCCCCCHHHHHHHHhCCCCCCe---EEEEEEccC
Confidence 45699999 9999999999999999999999999999988753 888877754
|
|
| >PRK09862 putative ATP-dependent protease; Provisional | Back alignment and domain information |
|---|
Probab=97.81 E-value=2e-05 Score=87.53 Aligned_cols=53 Identities=25% Similarity=0.360 Sum_probs=46.9
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCccC
Q 006897 83 PLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQI 138 (627)
Q Consensus 83 ~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~~ 138 (627)
...+++++++.+..|+.++|+||||+|||||++.|.|+++|.. |++.+++..+
T Consensus 196 q~~~~~al~laa~~G~~llliG~~GsGKTtLak~L~gllpp~~---g~e~le~~~i 248 (506)
T PRK09862 196 QEQGKRGLEITAAGGHNLLLIGPPGTGKTMLASRINGLLPDLS---NEEALESAAI 248 (506)
T ss_pred cHHHHhhhheeccCCcEEEEECCCCCcHHHHHHHHhccCCCCC---CcEEEecchh
Confidence 3458999999999999999999999999999999999999864 8888777554
|
|
| >TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.0001 Score=78.80 Aligned_cols=127 Identities=19% Similarity=0.218 Sum_probs=70.0
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCccCC-ChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHh
Q 006897 95 RDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIK-KPAQLRKICGFVAQEDNLLPLLTVKETLMFSANF 173 (627)
Q Consensus 95 ~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~~~-~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~ 173 (627)
++|.+++|.||+||||||+|++|++.+.+.....+.|.....++. ..+..+...+.+.|...--...+..+.+.-
T Consensus 132 ~~~glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~EdpiE~~~~~~~~~~~~v~Q~~v~~~~~~~~~~l~~---- 207 (358)
T TIGR02524 132 PQEGIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTYEAPIEFVYDEIETISASVCQSEIPRHLNNFAAGVRN---- 207 (358)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCCceEeccccccccceeeeeeccccccCHHHHHHH----
Confidence 588999999999999999999999987532111134544333321 112233345777776421111122222211
Q ss_pred cCCCCCHHHHHHHHHHHHHHcCCccccCCcCCccccCCCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHh
Q 006897 174 RLKGMSHKEKEDRVESLMDELGLTHVAGSFVGDEENRGISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYI 253 (627)
Q Consensus 174 ~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~gGe~qrPtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~ 253 (627)
. |....|...-||.+ |..+....++. + ..|..++-+.|-.+ +....
T Consensus 208 ----------------a-----LR~~Pd~i~vGEiR------d~et~~~al~a----a-~tGh~v~tTlHa~~--~~~~i 253 (358)
T TIGR02524 208 ----------------A-----LRRKPHAILVGEAR------DAETISAALEA----A-LTGHPVYTTLHSSG--VAETI 253 (358)
T ss_pred ----------------H-----hccCCCEEeeeeeC------CHHHHHHHHHH----H-HcCCcEEEeeccCC--HHHHH
Confidence 1 11123333335544 55544443332 2 25778999999766 46777
Q ss_pred hhheee
Q 006897 254 SKFLIL 259 (627)
Q Consensus 254 D~i~vL 259 (627)
+|++-+
T Consensus 254 ~Rl~~~ 259 (358)
T TIGR02524 254 RRLVGS 259 (358)
T ss_pred HHHHHh
Confidence 777654
|
Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems. |
| >PTZ00035 Rad51 protein; Provisional | Back alignment and domain information |
|---|
Probab=97.79 E-value=4.3e-05 Score=81.17 Aligned_cols=149 Identities=13% Similarity=0.139 Sum_probs=79.3
Q ss_pred eeece-EEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC-CC--CCccceE-EECCccCCChhhhcccEEEEccCCCCCCC
Q 006897 86 ILKSV-SFEARDSEILAVVGPSGTGKSSLLRIISGRVR-DQ--DFDPRSI-TVNCHQIKKPAQLRKICGFVAQEDNLLPL 160 (627)
Q Consensus 86 iL~~v-sl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~-~~--~~~~G~i-~i~g~~~~~~~~~r~~ig~v~Q~~~l~~~ 160 (627)
-||.+ ..=+++|+++.|.||||||||||+..++.... |. ....|.+ +++++...++++ +..+.|...+.+.
T Consensus 106 ~LD~lLgGGi~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~er----i~~ia~~~g~~~~ 181 (337)
T PTZ00035 106 QLDKLLGGGIETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPER----IVQIAERFGLDPE 181 (337)
T ss_pred HHHHHhCCCCCCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHH----HHHHHHHhCCChH
Confidence 46653 56799999999999999999999999976443 21 1123555 777765322222 3333555444444
Q ss_pred CCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCcc----ccCCcCCccccCCCCCC-CHHH----HHHHHHHHHHHH
Q 006897 161 LTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTH----VAGSFVGDEENRGISGL-DSTS----ALQVIELLASMA 231 (627)
Q Consensus 161 lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~----~~~~~~gGe~qrPtsgL-D~~~----~~~i~~~L~~l~ 231 (627)
++.+|+.+.. ..+.++..+.+.++.+.+.-.. +.|....=-+. -..|- +... -.+++..|++++
T Consensus 182 -~~l~nI~~~~-----~~~~e~~~~~l~~~~~~l~~~~~~lvVIDSital~r~-~~~~~~~~~~r~~~l~~~~~~L~~la 254 (337)
T PTZ00035 182 -DVLDNIAYAR-----AYNHEHQMQLLSQAAAKMAEERFALLIVDSATALFRV-DYSGRGELAERQQHLGKFLRALQKLA 254 (337)
T ss_pred -hHhhceEEEc-----cCCHHHHHHHHHHHHHHhhccCccEEEEECcHHhhhh-hccCcccHHHHHHHHHHHHHHHHHHH
Confidence 6777775531 1122333333333332221110 01111100000 01111 1111 234667788888
Q ss_pred HcCCCEEEEEccCc
Q 006897 232 KAKQRTVVLSIHQP 245 (627)
Q Consensus 232 ~~~g~Tii~~tH~~ 245 (627)
++.+.|||++-|-.
T Consensus 255 ~~~~vavvvtNqv~ 268 (337)
T PTZ00035 255 DEFNVAVVITNQVM 268 (337)
T ss_pred HHcCcEEEEecceE
Confidence 88899999887743
|
|
| >PRK11545 gntK gluconate kinase 1; Provisional | Back alignment and domain information |
|---|
Probab=97.78 E-value=7.8e-06 Score=77.74 Aligned_cols=61 Identities=18% Similarity=0.312 Sum_probs=41.0
Q ss_pred ECCCCCcHHHHHHHHHcCCCCCCCccceEEECCccCCChhhhc-ccEEEEccCCCCCCCCCHHHHHHHH
Q 006897 103 VGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKKPAQLR-KICGFVAQEDNLLPLLTVKETLMFS 170 (627)
Q Consensus 103 iGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~~~~~~~~r-~~ig~v~Q~~~l~~~lTV~e~l~~~ 170 (627)
+|+||||||||++.|++.+ |.+.++|..+......+ ...|+.+|+....+.+++.++..+.
T Consensus 1 ~G~sGsGKSTla~~la~~l-------~~~~~~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 62 (163)
T PRK11545 1 MGVSGSGKSAVASEVAHQL-------HAAFLDGDFLHPRRNIEKMASGEPLNDDDRKPWLQALNDAAFA 62 (163)
T ss_pred CCCCCCcHHHHHHHHHHHh-------CCeEEeCccCCchhhhccccCCCCCChhhHHHHHHHHHHHHHH
Confidence 6999999999999999886 55677774422112223 3457778876555556666666554
|
|
| >PRK00300 gmk guanylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.77 E-value=1.9e-05 Score=77.68 Aligned_cols=28 Identities=36% Similarity=0.644 Sum_probs=26.3
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCC
Q 006897 95 RDSEILAVVGPSGTGKSSLLRIISGRVR 122 (627)
Q Consensus 95 ~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~ 122 (627)
++|++++|+||||||||||++.|++..+
T Consensus 3 ~~g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 5899999999999999999999999874
|
|
| >PRK03846 adenylylsulfate kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.77 E-value=1.6e-05 Score=78.11 Aligned_cols=56 Identities=18% Similarity=0.307 Sum_probs=41.2
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCccCCChhhhcccEEEEccC
Q 006897 95 RDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKKPAQLRKICGFVAQE 154 (627)
Q Consensus 95 ~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~~~~~~~~r~~ig~v~Q~ 154 (627)
++|++++|+|+||||||||.+.|++.+.+.+ .|.+.++|.++. ..+...++|.+|+
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~--~~~~~ld~d~~~--~~~~~~~~~~~~~ 77 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEALHELG--VSTYLLDGDNVR--HGLCSDLGFSDAD 77 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHhCC--CCEEEEcCEeHH--hhhhhcCCcCccc
Confidence 6789999999999999999999999876532 378999886632 1222335565554
|
|
| >PRK13695 putative NTPase; Provisional | Back alignment and domain information |
|---|
Probab=97.77 E-value=3e-05 Score=74.45 Aligned_cols=51 Identities=10% Similarity=0.251 Sum_probs=37.3
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeC
Q 006897 211 GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYG 268 (627)
Q Consensus 211 PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G 268 (627)
|+.++|+. +.+.+.++.+ .|+++|+++|+.. +...+|++..+.+|++.+.-
T Consensus 107 ~~e~~~~~----~~~~l~~~~~-~~~~~i~v~h~~~--~~~~~~~i~~~~~~~i~~~~ 157 (174)
T PRK13695 107 KMELKSPK----FVKAVEEVLD-SEKPVIATLHRRS--VHPFVQEIKSRPGGRVYELT 157 (174)
T ss_pred cchhhhHH----HHHHHHHHHh-CCCeEEEEECchh--hHHHHHHHhccCCcEEEEEc
Confidence 34445543 4566666653 5889999999853 67889999999999997753
|
|
| >PRK05688 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=97.75 E-value=2.5e-05 Score=85.07 Aligned_cols=54 Identities=15% Similarity=0.199 Sum_probs=43.8
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCcc
Q 006897 83 PLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQ 137 (627)
Q Consensus 83 ~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~ 137 (627)
+.+++|++ +.+.+||.++|+|+||+|||||+++|+|...++....|.|...+.+
T Consensus 155 Gi~aID~l-~~I~~GqrigI~G~sG~GKSTLl~~I~g~~~~dv~V~g~Ig~rg~e 208 (451)
T PRK05688 155 GIRSINGL-LTVGRGQRLGLFAGTGVGKSVLLGMMTRFTEADIIVVGLIGERGRE 208 (451)
T ss_pred ceeeecce-EEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCEEEEEEeCcCcHh
Confidence 46799999 9999999999999999999999999999877642222555555544
|
|
| >PLN02318 phosphoribulokinase/uridine kinase | Back alignment and domain information |
|---|
Probab=97.75 E-value=2.4e-05 Score=86.99 Aligned_cols=63 Identities=17% Similarity=0.200 Sum_probs=50.0
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCccCCChhhhcccEEEEccCCCCCCCCCHHHHHHH
Q 006897 98 EILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKKPAQLRKICGFVAQEDNLLPLLTVKETLMF 169 (627)
Q Consensus 98 e~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~~~~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~ 169 (627)
-++||.||||||||||++.|+++++ . .|.|.++|.. . ..+.+++.+|++..++..++.++|.-
T Consensus 66 iIIGIaGpSGSGKTTLAk~LaglLp-~---vgvIsmDdy~-~----~~~~i~~nfD~P~a~D~d~L~enL~~ 128 (656)
T PLN02318 66 ILVGVAGPSGAGKTVFTEKVLNFMP-S---IAVISMDNYN-D----SSRIIDGNFDDPRLTDYDTLLDNIHD 128 (656)
T ss_pred EEEEEECCCCCcHHHHHHHHHhhCC-C---cEEEEEccee-c----chhhhCccCCChhhcchhHHHHHHHH
Confidence 4899999999999999999999974 2 3899998864 1 11235678888888887889898854
|
|
| >cd01120 RecA-like_NTPases RecA-like NTPases | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00011 Score=68.58 Aligned_cols=34 Identities=21% Similarity=0.421 Sum_probs=26.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
+++|.||||+||||+++.+++...+.+ +.+.+..
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~---~~v~~~~ 34 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKG---GKVVYVD 34 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcC---CEEEEEE
Confidence 478999999999999999998876532 5555543
|
This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion. |
| >TIGR03497 FliI_clade2 flagellar protein export ATPase FliI | Back alignment and domain information |
|---|
Probab=97.70 E-value=5e-05 Score=82.48 Aligned_cols=51 Identities=18% Similarity=0.327 Sum_probs=44.7
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCcc
Q 006897 83 PLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQ 137 (627)
Q Consensus 83 ~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~ 137 (627)
..++++++ +.+.+|+.++|+|+||+|||||+++|++..+++. |.+...|++
T Consensus 124 Gi~~iD~l-~~i~~Gqri~I~G~sG~GKTtLl~~i~~~~~~~~---gvi~~~Ger 174 (413)
T TIGR03497 124 GIKAIDGL-LTIGKGQRVGIFAGSGVGKSTLLGMIARNAKADI---NVIALIGER 174 (413)
T ss_pred cceeeeeE-EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCe---EEEEEEccc
Confidence 35689999 9999999999999999999999999999887753 777777765
|
Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively. |
| >TIGR03498 FliI_clade3 flagellar protein export ATPase FliI | Back alignment and domain information |
|---|
Probab=97.69 E-value=4.2e-05 Score=83.07 Aligned_cols=51 Identities=18% Similarity=0.281 Sum_probs=44.0
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCcc
Q 006897 83 PLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQ 137 (627)
Q Consensus 83 ~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~ 137 (627)
...+++ .++++.+|+.++|+|+||+|||||+++|+|..+++. |.+.+.|+.
T Consensus 127 Gi~aiD-~~~~i~~Gq~i~I~G~sG~GKTtLl~~I~~~~~~~~---gvi~~iGer 177 (418)
T TIGR03498 127 GVRVID-TFLPLCRGQRLGIFAGSGVGKSTLLSMLARNTDADV---VVIALVGER 177 (418)
T ss_pred ccEEEe-eeccccCCcEEEEECCCCCChHHHHHHHhCCCCCCE---EEEEEEeee
Confidence 345776 699999999999999999999999999999988753 888777765
|
Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively. |
| >PRK06793 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=97.68 E-value=8.1e-05 Score=80.93 Aligned_cols=50 Identities=20% Similarity=0.337 Sum_probs=43.9
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCcc
Q 006897 84 LHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQ 137 (627)
Q Consensus 84 ~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~ 137 (627)
.+++|++ +.+.+|+.++|+|+||+|||||+++|+|..+++. |.|.+.|+.
T Consensus 144 iraID~l-l~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~---gvI~~iGer 193 (432)
T PRK06793 144 IKSIDSM-LTIGIGQKIGIFAGSGVGKSTLLGMIAKNAKADI---NVISLVGER 193 (432)
T ss_pred CEEEecc-ceecCCcEEEEECCCCCChHHHHHHHhccCCCCe---EEEEeCCCC
Confidence 4588885 9999999999999999999999999999988753 888777765
|
|
| >cd01854 YjeQ_engC YjeQ/EngC | Back alignment and domain information |
|---|
Probab=97.67 E-value=6.5e-05 Score=78.19 Aligned_cols=79 Identities=14% Similarity=0.140 Sum_probs=52.9
Q ss_pred eceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEE---CCccCCC-hhhhcc-cEEEEccCCCC---C-
Q 006897 88 KSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITV---NCHQIKK-PAQLRK-ICGFVAQEDNL---L- 158 (627)
Q Consensus 88 ~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i---~g~~~~~-~~~~r~-~ig~v~Q~~~l---~- 158 (627)
+.+...+. +++++++|+||+|||||+|.|.|...+.. |++.. .|+.... ...++. ..+++.+.|.+ .
T Consensus 153 ~~L~~~L~-~k~~~~~G~sg~GKSTlin~l~~~~~~~~---g~v~~~~~~g~~tT~~~~~~~~~~~~~liDtPG~~~~~~ 228 (287)
T cd01854 153 DELREYLK-GKTSVLVGQSGVGKSTLINALLPDLDLAT---GEISEKLGRGRHTTTHRELFPLPGGGLLIDTPGFREFGL 228 (287)
T ss_pred HHHHhhhc-cceEEEECCCCCCHHHHHHHHhchhhccc---cceeccCCCCCcccceEEEEEcCCCCEEEECCCCCccCC
Confidence 44444554 58999999999999999999999987653 77765 2333211 122222 26788888765 2
Q ss_pred CCCCHHHHHHHH
Q 006897 159 PLLTVKETLMFS 170 (627)
Q Consensus 159 ~~lTV~e~l~~~ 170 (627)
..++..|...+.
T Consensus 229 ~~~~~~~~~~~f 240 (287)
T cd01854 229 LHIDPEELAHYF 240 (287)
T ss_pred ccCCHHHHHHHh
Confidence 457777766654
|
YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation. |
| >PRK00098 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00011 Score=77.01 Aligned_cols=69 Identities=19% Similarity=0.246 Sum_probs=46.0
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEE---CCccCCChhhh--cccEEEEccCCCCC----CCCCHHHH
Q 006897 96 DSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITV---NCHQIKKPAQL--RKICGFVAQEDNLL----PLLTVKET 166 (627)
Q Consensus 96 ~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i---~g~~~~~~~~~--r~~ig~v~Q~~~l~----~~lTV~e~ 166 (627)
+|++++++|+||+|||||+|.|.|...+.. |+|.. .|+......++ ....+++.+.|.+. ..++..|.
T Consensus 163 ~gk~~~~~G~sgvGKStlin~l~~~~~~~~---g~v~~~~~~G~htT~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~ 239 (298)
T PRK00098 163 AGKVTVLAGQSGVGKSTLLNALAPDLELKT---GEISEALGRGKHTTTHVELYDLPGGGLLIDTPGFSSFGLHDLEAEEL 239 (298)
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCcCCCC---cceeccCCCCCcccccEEEEEcCCCcEEEECCCcCccCCCCCCHHHH
Confidence 589999999999999999999999877643 88775 34332211111 12356887777654 33455444
Q ss_pred H
Q 006897 167 L 167 (627)
Q Consensus 167 l 167 (627)
.
T Consensus 240 ~ 240 (298)
T PRK00098 240 E 240 (298)
T ss_pred H
Confidence 3
|
|
| >TIGR03496 FliI_clade1 flagellar protein export ATPase FliI | Back alignment and domain information |
|---|
Probab=97.64 E-value=8.5e-05 Score=80.67 Aligned_cols=167 Identities=14% Similarity=0.132 Sum_probs=89.7
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCccCCCh----------hhhcccEEEEcc
Q 006897 84 LHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKKP----------AQLRKICGFVAQ 153 (627)
Q Consensus 84 ~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~~~~~----------~~~r~~ig~v~Q 153 (627)
..+++.+ +.+.+||+++|+|+||+|||||+++|++..+++. +.+...|++-.+. ..+++.+-++-+
T Consensus 125 i~~id~l-~~i~~Gq~~~I~G~sG~GKTtLl~~I~~~~~~~~---~vi~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~t 200 (411)
T TIGR03496 125 VRAINGL-LTVGRGQRMGIFAGSGVGKSTLLGMMARYTEADV---VVVGLIGERGREVKEFIEDILGEEGLARSVVVAAT 200 (411)
T ss_pred EEeecce-EEEecCcEEEEECCCCCCHHHHHHHHhcCCCCCE---EEEEEEecChHHHHHHHHHHhhCCCcceEEEEEEC
Confidence 5689999 9999999999999999999999999999988753 5554444431110 112334445444
Q ss_pred CCC--C------CCCCCHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHHHcCCccccCCcCCccccCCC-CCCCHHHHHHH
Q 006897 154 EDN--L------LPLLTVKETLMFSANFRLKGM-SHKEKEDRVESLMDELGLTHVAGSFVGDEENRGI-SGLDSTSALQV 223 (627)
Q Consensus 154 ~~~--l------~~~lTV~e~l~~~~~~~~~~~-~~~~~~~~v~~~l~~lgL~~~~~~~~gGe~qrPt-sgLD~~~~~~i 223 (627)
.+. . +-.+|+.|+++.- .... ---+.-.+..++..++++. . || -|. .|-.+..-..+
T Consensus 201 sd~~~~~r~~a~~~a~tiAEyfr~~----G~~Vll~~Dsltr~A~A~REisl~--~-----ge--~P~~~gyp~~~f~~l 267 (411)
T TIGR03496 201 ADESPLMRLRAAFYATAIAEYFRDQ----GKDVLLLMDSLTRFAMAQREIALA--I-----GE--PPATKGYPPSVFAKL 267 (411)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHC----CCCEEEEEeChHHHHHHHHHHHHh--c-----CC--CCCccCcCHHHHHHh
Confidence 322 1 1123333433321 0000 0001112233333443331 1 11 022 35666666666
Q ss_pred HHHHHHHHH--c-CC-CEEEEEccCccHHH-HHHhhhheeecCCeEEee
Q 006897 224 IELLASMAK--A-KQ-RTVVLSIHQPSYRI-LQYISKFLILSRGSVVHY 267 (627)
Q Consensus 224 ~~~L~~l~~--~-~g-~Tii~~tH~~~~~i-~~~~D~i~vL~~G~iv~~ 267 (627)
-+++.+..+ + .| .|.+-+..-+..++ .-.+|.+.-+-+|+|+-+
T Consensus 268 ~~l~ERag~~~~~~GSIT~~~tv~~~~dd~~dpi~~~~~~i~dg~ivLs 316 (411)
T TIGR03496 268 PQLVERAGNGEEGKGSITAFYTVLVEGDDQQDPIADAARAILDGHIVLS 316 (411)
T ss_pred HHHHHHhcccCCCCcceeEEEEEEccCCCCCCcchhhhcccccEEEEEc
Confidence 666666543 1 23 45555444222111 235788888889998864
|
Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively. |
| >TIGR01420 pilT_fam pilus retraction protein PilT | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.0003 Score=75.12 Aligned_cols=125 Identities=20% Similarity=0.231 Sum_probs=71.2
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCccCCChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHh
Q 006897 94 ARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANF 173 (627)
Q Consensus 94 i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~~~~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~ 173 (627)
..++.++.|.||+||||||+++.|.+.+.+. ..+.|.....++ + .........+.|...-....+..+-+
T Consensus 119 ~~~~g~ili~G~tGSGKTT~l~al~~~i~~~--~~~~i~tiEdp~-E-~~~~~~~~~i~q~evg~~~~~~~~~l------ 188 (343)
T TIGR01420 119 ERPRGLILVTGPTGSGKSTTLASMIDYINKN--AAGHIITIEDPI-E-YVHRNKRSLINQREVGLDTLSFANAL------ 188 (343)
T ss_pred hhcCcEEEEECCCCCCHHHHHHHHHHhhCcC--CCCEEEEEcCCh-h-hhccCccceEEccccCCCCcCHHHHH------
Confidence 4578899999999999999999999876532 126666554442 1 01112223333322111111211111
Q ss_pred cCCCCCHHHHHHHHHHHHHHcCCccccCCcCCccccCCCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHh
Q 006897 174 RLKGMSHKEKEDRVESLMDELGLTHVAGSFVGDEENRGISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYI 253 (627)
Q Consensus 174 ~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~gGe~qrPtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~ 253 (627)
..+ |....|..+-||-+ |+.+....++ .+ ..|.+++.++|..+ .....
T Consensus 189 --------------~~~-----lr~~pd~i~vgEir------d~~~~~~~l~----aa-~tGh~v~~T~Ha~~--~~~~~ 236 (343)
T TIGR01420 189 --------------RAA-----LREDPDVILIGEMR------DLETVELALT----AA-ETGHLVFGTLHTNS--AAQTI 236 (343)
T ss_pred --------------HHh-----hccCCCEEEEeCCC------CHHHHHHHHH----HH-HcCCcEEEEEcCCC--HHHHH
Confidence 111 11233444456643 7777655444 23 35889999999887 45778
Q ss_pred hhheeec
Q 006897 254 SKFLILS 260 (627)
Q Consensus 254 D~i~vL~ 260 (627)
+|++-|-
T Consensus 237 ~Rl~~~~ 243 (343)
T TIGR01420 237 ERIIDVF 243 (343)
T ss_pred HHHHHhc
Confidence 9987663
|
This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation. |
| >PRK08972 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=97.62 E-value=5.4e-05 Score=82.11 Aligned_cols=41 Identities=17% Similarity=0.353 Sum_probs=36.9
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC
Q 006897 83 PLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQ 124 (627)
Q Consensus 83 ~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~ 124 (627)
+..+++.+ +.+.+||.++|+|+||+|||||+++|++...++
T Consensus 149 Gi~aID~l-l~i~~GqrigI~G~sG~GKSTLL~~I~~~~~~d 189 (444)
T PRK08972 149 GVRAINAM-LTVGKGQRMGLFAGSGVGKSVLLGMMTRGTTAD 189 (444)
T ss_pred cceeecce-EEEcCCCEEEEECCCCCChhHHHHHhccCCCCC
Confidence 35688888 999999999999999999999999999987654
|
|
| >cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway | Back alignment and domain information |
|---|
Probab=97.62 E-value=5.6e-05 Score=75.51 Aligned_cols=25 Identities=24% Similarity=0.513 Sum_probs=23.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGRVRD 123 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl~~~ 123 (627)
++||.||||||||||.+.|++++.+
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~~ 25 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSR 25 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHhh
Confidence 5899999999999999999998864
|
The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis. |
| >PRK05922 type III secretion system ATPase; Validated | Back alignment and domain information |
|---|
Probab=97.60 E-value=9.5e-05 Score=80.38 Aligned_cols=51 Identities=20% Similarity=0.304 Sum_probs=42.5
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCcc
Q 006897 83 PLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQ 137 (627)
Q Consensus 83 ~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~ 137 (627)
+.+++|.+ +.+.+|+.++|+|+||+|||||+++|+|..+++. |.+..-|+.
T Consensus 144 GIr~ID~l-l~I~~GqrigI~G~nG~GKSTLL~~Ia~~~~~d~---gvi~liGer 194 (434)
T PRK05922 144 GIKAIDAF-LTLGKGQRIGVFSEPGSGKSSLLSTIAKGSKSTI---NVIALIGER 194 (434)
T ss_pred Cceeecce-EEEcCCcEEEEECCCCCChHHHHHHHhccCCCCc---eEEEEeCCC
Confidence 34588887 9999999999999999999999999999887653 666555543
|
|
| >cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00023 Score=68.62 Aligned_cols=49 Identities=20% Similarity=0.175 Sum_probs=38.4
Q ss_pred CCCCCC---HHHHHHHHHHHHHHHHcCCCEEEEEccCccH--------HHHHHhhhheeec
Q 006897 211 GISGLD---STSALQVIELLASMAKAKQRTVVLSIHQPSY--------RILQYISKFLILS 260 (627)
Q Consensus 211 PtsgLD---~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~--------~i~~~~D~i~vL~ 260 (627)
|++.+| ...+..+.++++.+++ .|.|+|+++|+... .+..+||.++.|+
T Consensus 104 ~~~~~~~~~~~~~~~i~~l~~~l~~-~g~tvi~v~~~~~~~~~~~~~~~~~~~aD~ii~l~ 163 (187)
T cd01124 104 VSGLLLMEQSTARLEIRRLLFALKR-FGVTTLLTSEQSGLEGTGFGGGDVEYLVDGVIRLR 163 (187)
T ss_pred cHHHhhcChHHHHHHHHHHHHHHHH-CCCEEEEEeccccCCCcccCcCceeEeeeEEEEEE
Confidence 566777 7778888889988876 58999999997652 1567889998886
|
A related protein is found in archaea. |
| >cd01125 repA Hexameric Replicative Helicase RepA | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00074 Score=68.30 Aligned_cols=35 Identities=23% Similarity=0.246 Sum_probs=31.1
Q ss_pred CCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCcc
Q 006897 212 ISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPS 246 (627)
Q Consensus 212 tsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~ 246 (627)
.+.+|+.....+++.|++++++.|.|||+++|...
T Consensus 126 ~~~~d~~~~~~~~~~L~~~a~~~g~avl~v~H~~K 160 (239)
T cd01125 126 VSENDNGAMDAVIKALRRIAAQTGAAILLVHHVRK 160 (239)
T ss_pred CCcCCHHHHHHHHHHHHHHHHHhCCEEEEEeccCc
Confidence 46789999999999999999888999999999864
|
RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 627 | ||||
| 1l2t_A | 235 | Dimeric Structure Of Mj0796, A Bacterial Abc Transp | 4e-09 | ||
| 3tif_A | 235 | Dimeric Structure Of A Post-Hydrolysis State Of The | 5e-09 | ||
| 3c41_J | 242 | Abc Protein Artp In Complex With Amp-PnpMG2+ Length | 2e-08 | ||
| 2olj_A | 263 | Abc Protein Artp In Complex With AdpMG2+ Length = 2 | 2e-08 | ||
| 3fvq_A | 359 | Crystal Structure Of The Nucleotide Binding Domain | 2e-07 | ||
| 1f3o_A | 235 | Crystal Structure Of Mj0796 Atp-Binding Cassette Le | 2e-07 | ||
| 1z47_A | 355 | Structure Of The Atpase Subunit Cysa Of The Putativ | 6e-07 | ||
| 4hlu_D | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 2e-06 | ||
| 1vpl_A | 256 | Crystal Structure Of Abc Transporter Atp-binding Pr | 2e-06 | ||
| 3gfo_A | 275 | Structure Of Cbio1 From Clostridium Perfringens: Pa | 5e-06 | ||
| 1oxx_K | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 7e-06 | ||
| 1oxs_C | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 7e-06 | ||
| 1g29_1 | 372 | Malk Length = 372 | 3e-05 | ||
| 2yyz_A | 359 | Crystal Structure Of Sugar Abc Transporter, Atp-Bin | 5e-05 | ||
| 2d62_A | 375 | Crystal Structure Of Multiple Sugar Binding Transpo | 5e-05 | ||
| 2r6g_A | 381 | The Crystal Structure Of The E. Coli Maltose Transp | 6e-05 | ||
| 1q1b_A | 381 | Crystal Structure Of E. Coli Malk In The Nucleotide | 6e-05 | ||
| 1q12_A | 381 | Crystal Structure Of The Atp-bound E. Coli Malk Len | 6e-05 | ||
| 2hyd_A | 578 | Multidrug Abc Transporter Sav1866 Length = 578 | 7e-05 | ||
| 3qf4_B | 598 | Crystal Structure Of A Heterodimeric Abc Transporte | 2e-04 | ||
| 2it1_A | 362 | Structure Of Ph0203 Protein From Pyrococcus Horikos | 2e-04 | ||
| 2pcj_A | 224 | Crystal Structure Of Abc Transporter (Aq_297) From | 3e-04 | ||
| 2nq2_C | 253 | An Inward-Facing Conformation Of A Putative Metal-C | 3e-04 | ||
| 4ayw_A | 619 | Structure Of The Human Mitochondrial Abc Transporte | 3e-04 | ||
| 4ayt_A | 595 | Structure Of The Human Mitochondrial Abc Transporte | 3e-04 | ||
| 3g60_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 6e-04 | ||
| 3g5u_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 6e-04 | ||
| 1mv5_A | 243 | Crystal Structure Of Lmra Atp-Binding Domain Length | 7e-04 | ||
| 1ji0_A | 240 | Crystal Structure Analysis Of The Abc Transporter F | 7e-04 |
| >pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter Cassette Length = 235 | Back alignment and structure |
|
| >pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The Atp-Binding Cassette Mj0796 Bound To Adp And Pi Length = 235 | Back alignment and structure |
|
| >pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+ Length = 242 | Back alignment and structure |
|
| >pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+ Length = 263 | Back alignment and structure |
|
| >pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc Complexed With Atp Length = 359 | Back alignment and structure |
|
| >pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette Length = 235 | Back alignment and structure |
|
| >pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate Atp-Binding Cassette (Abc) Transporter From Alicyclobacillus Acidocaldarius Length = 355 | Back alignment and structure |
|
| >pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein (tm0544) From Thermotoga Maritima At 2.10 A Resolution Length = 256 | Back alignment and structure |
|
| >pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of The Abc Transporter Complex Cbionq Length = 275 | Back alignment and structure |
|
| >pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|1G29|1 Chain 1, Malk Length = 372 | Back alignment and structure |
|
| >pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding Protein Length = 359 | Back alignment and structure |
|
| >pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp- Binding Protein Length = 375 | Back alignment and structure |
|
| >pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter Length = 381 | Back alignment and structure |
|
| >pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free Form Length = 381 | Back alignment and structure |
|
| >pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk Length = 381 | Back alignment and structure |
|
| >pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866 Length = 578 | Back alignment and structure |
|
| >pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 598 | Back alignment and structure |
|
| >pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii Length = 362 | Back alignment and structure |
|
| >pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex Aeolicus Vf5 Length = 224 | Back alignment and structure |
|
| >pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate Type Abc Transporter. Length = 253 | Back alignment and structure |
|
| >pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 (plate Form) Length = 619 | Back alignment and structure |
|
| >pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 Length = 595 | Back alignment and structure |
|
| >pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain Length = 243 | Back alignment and structure |
|
| >pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From Thermotoga Maritima Length = 240 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256 | Back alignment and structure |
|---|
Score = 98.0 bits (245), Expect = 5e-23
Identities = 55/225 (24%), Positives = 95/225 (42%), Gaps = 48/225 (21%)
Query: 87 LKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRS--ITVNCHQIKK-PAQ 143
LK +SFE + EI ++GP+G GK++ LRIIS ++ P S +TV + + P +
Sbjct: 31 LKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIK-----PSSGIVTVFGKNVVEEPHE 85
Query: 144 LRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAGSF 203
+RK+ ++ +E + E L F A S E E+ VE + GL
Sbjct: 86 VRKLISYLPEEAGAYRNMQGIEYLRFVA--GFYASSSSEIEEMVERATEIAGLGEKIKDR 143
Query: 204 VG-------------------------DEENRGISGLDSTSALQVIELLASMAKAKQRTV 238
V DE SGLD +A +V ++L ++ + T+
Sbjct: 144 VSTYSKGMVRKLLIARALMVNPRLAILDEP---TSGLDVLNAREVRKILKQASQ-EGLTI 199
Query: 239 VLSIHQPSYRILQYISKF----LILSRGSVVHYGSLELLEETINN 279
++S H + + ++ G++V G++E L+E
Sbjct: 200 LVSSH-----NMLEVEFLCDRIALIHNGTIVETGTVEELKERYKA 239
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214 | Back alignment and structure |
|---|
Score = 92.6 bits (231), Expect = 1e-21
Identities = 35/202 (17%), Positives = 74/202 (36%), Gaps = 40/202 (19%)
Query: 87 LKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRS--ITVNCHQIKKPAQL 144
L+ ++ ++ GP+G GK++LL+ IS ++ P I N I K +
Sbjct: 25 LERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLK-----PLKGEIIYNGVPITK---V 76
Query: 145 RKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVA---G 201
+ F+ +E + ++V++ L A L G+ K ++ + ++ + + + G
Sbjct: 77 KGKIFFLPEEIIVPRKISVEDYLKAVA--SLYGV--KVNKNEIMDALESVEVLDLKKKLG 132
Query: 202 SFVGDEENR-GI-----------------SGLDSTSALQVIELLASMAKAKQRTVVLSIH 243
R + +D S +V++ + + K K ++ S
Sbjct: 133 ELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSRE 192
Query: 244 QPSYRILQYISKFLILSRGSVV 265
L Y L + S
Sbjct: 193 -----ELSYCDVNENLHKYSTK 209
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 85.3 bits (212), Expect = 2e-18
Identities = 45/243 (18%), Positives = 91/243 (37%), Gaps = 50/243 (20%)
Query: 85 HILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRS--ITVNCHQIKK-- 140
ILK +S++ + + G +G GK++LL I++ S + + K
Sbjct: 35 TILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEP-----ATSGTVNLFGKMPGKVG 89
Query: 141 --PAQLRKICGFVAQE--DNLLPLLTVKETLMFSANFRLKGMSH---KEKEDRVESLMDE 193
+R+ GFV+ + V + ++ S F+ G+ E + L+
Sbjct: 90 YSAETVRQHIGFVSHSLLEKFQEGERVIDVVI-SGAFKSIGVYQDIDDEIRNEAHQLLKL 148
Query: 194 LGLTHVAGSFVG-------------------------DEENRGISGLDSTSALQVIELLA 228
+G++ A ++G DE +GLD + ++ +L
Sbjct: 149 VGMSAKAQQYIGYLSTGEKQRVMIARALMGQPQVLILDEP---AAGLDFIARESLLSILD 205
Query: 229 SMAKA-KQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGSLE--LLEETINNLGYQIP 285
S++ + ++ H I SK L+L G + G++E L E ++ +Q
Sbjct: 206 SLSDSYPTLAMIYVTHFIE-EITANFSKILLLKDGQSIQQGAVEDILTSENMSRF-FQKN 263
Query: 286 TQL 288
+
Sbjct: 264 VAV 266
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 83.8 bits (208), Expect = 3e-18
Identities = 50/242 (20%), Positives = 96/242 (39%), Gaps = 49/242 (20%)
Query: 86 ILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKKPAQLR 145
+ + ++F+ +ILAV+G +G GKS+LL ++ G R P + ++
Sbjct: 20 LFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHR-----PIQGKI---------EVY 65
Query: 146 KICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDR--VESLMDELGLTHVAGSF 203
+ GFV Q + +V + ++ + + + + D +D L LTH+A
Sbjct: 66 QSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKRE 125
Query: 204 VG-------------------------DEENRGISGLDSTSALQVIELLASMAKAKQRTV 238
DE S LD + V+ LL +A+++ TV
Sbjct: 126 FTSLSGGQRQLILIARAIASECKLILLDEP---TSALDLANQDIVLSLLIDLAQSQNMTV 182
Query: 239 VLSIHQPSYRILQYISKFLILSRGSVVHYGSLE--LLEETINNLGYQIPTQLNAIEFAME 296
V + HQP+ ++ +K L+L++ +G L E + L + +P ++
Sbjct: 183 VFTTHQPNQ-VVAIANKTLLLNKQ-NFKFGETRNILTSENLTAL-FHLPMFEQQAQYKES 239
Query: 297 IM 298
Sbjct: 240 FF 241
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 80.7 bits (200), Expect = 5e-17
Identities = 59/281 (20%), Positives = 110/281 (39%), Gaps = 65/281 (23%)
Query: 57 VTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRI 116
+ V L+Y T H LK ++ + E+ A++G +G GKS+L +
Sbjct: 8 LKVEELNYNYSDGT--------------HALKGINMNIKRGEVTAILGGNGVGKSTLFQN 53
Query: 117 I-------SGRVRDQDFDPRSITVNCHQIKKPAQLRKICGFVAQE-DNLLPLLTVKETLM 168
SGR+ FD + I + I +LR+ G V Q+ DN L +V + +
Sbjct: 54 FNGILKPSSGRIL---FDNKPIDYSRKGIM---KLRESIGIVFQDPDNQLFSASVYQDVS 107
Query: 169 FS-ANFRLKGMSHKEKEDRVESLMDELGLTHVAGSFV----GDEENR----GI------- 212
F N + E RV++ + G+ H+ ++ R G+
Sbjct: 108 FGAVNM---KLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKV 164
Query: 213 -------SGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVV 265
+GLD ++++LL M K T++++ H + Y ++ G V+
Sbjct: 165 LILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDI-VPLYCDNVFVMKEGRVI 223
Query: 266 HYGS-LELL--EETINNLGYQIPTQLNAIEFAMEIMHPLED 303
G+ E+ +E I + ++P +M L++
Sbjct: 224 LQGNPKEVFAEKEVIRKVNLRLP-------RIGHLMEILKE 257
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224 | Back alignment and structure |
|---|
Score = 78.3 bits (194), Expect = 1e-16
Identities = 50/197 (25%), Positives = 86/197 (43%), Gaps = 48/197 (24%)
Query: 84 LHILKSVSFEARDSEILAVVGPSGTGKSSLLRII-------SGRVRDQDFDPRSITVNCH 136
ILK +S + E ++++G SG+GKS+LL I+ G+V + + V+
Sbjct: 17 YEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKE-----VDYT 71
Query: 137 QIKKPAQLR--KICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDEL 194
K+ + LR K+ GFV Q L+P LT E ++ G KE ++R E L+ EL
Sbjct: 72 NEKELSLLRNRKL-GFVFQFHYLIPELTALENVIVPMLKM--GKPKKEAKERGEYLLSEL 128
Query: 195 GLTH------------------VAGSFVG-------DEENRGISG-LDSTSALQVIELLA 228
GL +A + DE +G LDS + +V+++
Sbjct: 129 GLGDKLSRKPYELSGGEQQRVAIARALANEPILLFADEP----TGNLDSANTKRVMDIFL 184
Query: 229 SMAKAKQRTVVLSIHQP 245
+ + ++V+ H+
Sbjct: 185 KINEGGT-SIVMVTHER 200
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* Length = 263 | Back alignment and structure |
|---|
Score = 76.5 bits (189), Expect = 1e-15
Identities = 44/176 (25%), Positives = 79/176 (44%), Gaps = 27/176 (15%)
Query: 34 SSSFYQPTPSPSLPPQRLKTTCKVTVRNL--SYAIQPNTSILSHLLHEPKVPLHILKSVS 91
SS + S L P+ + V L S+ L +LK ++
Sbjct: 2 GSSHHHHHHSSGLVPRGSHMLQMIDVHQLKKSFG-----------------SLEVLKGIN 44
Query: 92 FEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKKP----AQLRKI 147
R+ E++ V+GPSG+GKS+ LR ++ +DFD I ++ +K ++R+
Sbjct: 45 VHIREGEVVVVIGPSGSGKSTFLRCLN---LLEDFDEGEIIIDGINLKAKDTNLNKVREE 101
Query: 148 CGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAGSF 203
G V Q NL P +TV + A +++ ++ E + L+D++GL A ++
Sbjct: 102 VGMVFQRFNLFPHMTVLNNITL-APMKVRKWPREKAEAKAMELLDKVGLKDKAHAY 156
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235 | Back alignment and structure |
|---|
Score = 75.3 bits (186), Expect = 2e-15
Identities = 47/202 (23%), Positives = 88/202 (43%), Gaps = 47/202 (23%)
Query: 81 KVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRII-------SGRVRDQDFDPRSITV 133
+ ++ LK+V+ ++ E ++++GPSG+GKS++L II G V + +
Sbjct: 15 EEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDD 74
Query: 134 NCHQIKKPAQLR--KICGFVAQEDNLLPLLTVKETLMFSANFRLK-GMSHKEKEDRVESL 190
+ + ++R KI GFV Q+ NL+PLLT E + F+ + MS +E+ R
Sbjct: 75 D-----ELTKIRRDKI-GFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALEC 128
Query: 191 MDELGLTHVAGSFVGDEENRGISG---------------------------LDSTSALQV 223
+ L + ++ +SG LDS + ++
Sbjct: 129 LKMAELEERFANHKPNQ----LSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKI 184
Query: 224 IELLASMAKAKQRTVVLSIHQP 245
++LL + + +TVV+ H
Sbjct: 185 MQLLKKLNEEDGKTVVVVTHDI 206
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 Length = 262 | Back alignment and structure |
|---|
Score = 75.3 bits (186), Expect = 3e-15
Identities = 33/127 (25%), Positives = 60/127 (47%), Gaps = 13/127 (10%)
Query: 84 LHILKSVSFEARDSEILAVVGPSGTGKSSLLRII-------SGRVR--DQDFDPRSITVN 134
+LK VS +AR ++++++G SG+GKS+ LR I G + Q+ +
Sbjct: 19 HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDG 78
Query: 135 CHQIKKPAQLRKIC---GFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLM 191
++ QLR + V Q NL +TV E +M A ++ G+S + +R +
Sbjct: 79 QLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVME-APIQVLGLSKHDARERALKYL 137
Query: 192 DELGLTH 198
++G+
Sbjct: 138 AKVGIDE 144
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 69.5 bits (171), Expect = 2e-13
Identities = 43/249 (17%), Positives = 84/249 (33%), Gaps = 65/249 (26%)
Query: 86 ILKSVSFEARDSEILAVVGPSGTGKSSLLRII------SGRVRDQDFDPRSITVNCHQIK 139
L +S E R EIL +VGP+G GKS+LL + G ++ + +
Sbjct: 15 RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGKGSIQFAGQPLEAWS------- 67
Query: 140 KPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHV 199
+L +++Q+ V L K + + + + L L
Sbjct: 68 -ATKLALHRAYLSQQQTPPFATPVWHYLTL-------HQHDKTRTELLNDVAGALALDDK 119
Query: 200 AGSFVGDEENRGISG---------------------------LDS-TSAL------QVIE 225
G +SG LD ++L + +
Sbjct: 120 LGRSTNQ-----LSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDK 174
Query: 226 LLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGSLE--LLEETINNLGYQ 283
+L++++ + +V+S H + L++ + +L G ++ G E L + Y
Sbjct: 175 ILSALS-QQGLAIVMSSHDLN-HTLRHAHRAWLLKGGKMLASGRREEVLTPPNLAQA-YG 231
Query: 284 IPTQLNAIE 292
+ + IE
Sbjct: 232 MNFRRLDIE 240
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366 | Back alignment and structure |
|---|
Score = 70.8 bits (174), Expect = 3e-13
Identities = 50/237 (21%), Positives = 87/237 (36%), Gaps = 65/237 (27%)
Query: 78 HEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRII-------SGRVRDQDFDPRS 130
H+ + L +VS +I V+G SG GKS+L+R + G V D +
Sbjct: 35 HQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVL---VDGQE 91
Query: 131 ITVNCHQIKKPAQLR----KICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDR 186
+T ++L +I G + Q NLL TV + L E + R
Sbjct: 92 LTT-----LSESELTKARRQI-GMIFQHFNLLSSRTVFGNVALP--LELDNTPKDEVKRR 143
Query: 187 VESLMDELGLTHVAGSF-----------VG--------------DEENRGISGLDSTSAL 221
V L+ +GL S+ V D+ +TSAL
Sbjct: 144 VTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQ---------ATSAL 194
Query: 222 ------QVIELLASMAKAKQRTVVLSIHQPSYRILQYI-SKFLILSRGSVVHYGSLE 271
++ELL + + T++L H+ +++ I ++S G ++ ++
Sbjct: 195 DPATTRSILELLKDINRRLGLTILLITHEMD--VVKRICDCVAVISNGELIEQDTVS 249
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359 | Back alignment and structure |
|---|
Score = 69.5 bits (171), Expect = 6e-13
Identities = 31/124 (25%), Positives = 59/124 (47%), Gaps = 15/124 (12%)
Query: 85 HILKSVSFEARDSEILAVVGPSGTGKSSLLRII-------SGRVRDQDFDPRSITVNCHQ 137
+L +S EIL ++G SG GK++LLR + SG + ++I
Sbjct: 18 PVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEIS---LSGKTIFSKNTN 74
Query: 138 IKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLT 197
+ P + R++ G++ QE L P LTV + + ++ R+E++++ G++
Sbjct: 75 L--PVRERRL-GYLVQEGVLFPHLTVYRNIAYG--LGNGKGRTAQERQRIEAMLELTGIS 129
Query: 198 HVAG 201
+AG
Sbjct: 130 ELAG 133
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266 | Back alignment and structure |
|---|
Score = 67.2 bits (165), Expect = 1e-12
Identities = 49/245 (20%), Positives = 98/245 (40%), Gaps = 56/245 (22%)
Query: 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLR 115
++ V N+S+ T + L++VS + E L V G +G+GKS+LL+
Sbjct: 2 RIEVVNVSHIFHRGTPLEKK----------ALENVSLVINEGECLLVAGNTGSGKSTLLQ 51
Query: 116 IISGRVRDQDFDPRS--ITVNCHQIKKPAQLRKICGFVAQE-DNLLPLLTVKETLMFSA- 171
I++G + P S + + + KK ++R+ G Q ++ V + + F+
Sbjct: 52 IVAGLIE-----PTSGDVLYD-GERKKGYEIRRNIGIAFQYPEDQFFAERVFDEVAFAVK 105
Query: 172 NFRLKGMSHKEKEDRVESLMDELGLTH--------------------VAG-------SFV 204
NF ++ V+ M+ +GL +A +
Sbjct: 106 NF---YPD-RDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILI 161
Query: 205 GDEENRGISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSV 264
DE + GLD ++ ++ K +TV+L H ++ ++ + ++L +G
Sbjct: 162 LDEP---LVGLDREGKTDLLRIVEKW-KTLGKTVILISHDIET-VINHVDRVVVLEKGKK 216
Query: 265 VHYGS 269
V G+
Sbjct: 217 VFDGT 221
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 69.3 bits (170), Expect = 2e-12
Identities = 39/206 (18%), Positives = 69/206 (33%), Gaps = 44/206 (21%)
Query: 85 HILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKKPAQL 144
L+ E R E++ +VGP+G GK++ +++++G + + KP Q
Sbjct: 370 FKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEP---TEGKVEWDLTVAYKP-QY 425
Query: 145 RKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAGSFV 204
K TV E S L+ LG+ + V
Sbjct: 426 IKAE----------YEGTVYEL------LSKIDSSKLNSNFYKTELLKPLGIIDLYDRNV 469
Query: 205 GD----EENR-GI-----------------SGLDSTSALQVIELLASMAKAKQRTVVLSI 242
D E R I + LD L V + + + ++T ++
Sbjct: 470 EDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVE 529
Query: 243 HQPSYRILQYISKFLILSRGSVVHYG 268
H ++ Y+S LI+ G +G
Sbjct: 530 H--DVLMIDYVSDRLIVFEGEPGRHG 553
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 57.3 bits (139), Expect = 9e-09
Identities = 40/249 (16%), Positives = 88/249 (35%), Gaps = 60/249 (24%)
Query: 57 VTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRI 116
+++ NL + + H L+ L V +D ++ +VGP+GTGK++ ++I
Sbjct: 84 ISIVNLPEQLDED---CVHRYGVNAFVLYRLPIV----KDGMVVGIVGPNGTGKTTAVKI 136
Query: 117 ISGRVR----DQDFDPRSITVNCHQIKKPAQLRKICG------FVAQEDNLLPLLTVKET 166
++G++ + + ++ + ++ Q +LLP +
Sbjct: 137 LAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKV 196
Query: 167 LMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAGSFVGDEENRGISG------------ 214
+ ++ + E ++ EL L +V + +SG
Sbjct: 197 RE--------LLKKVDEVGKFEEVVKELELENVLDRELHQ-----LSGGELQRVAIAAAL 243
Query: 215 ---------------LDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLIL 259
LD L+V ++ +A + V++ H + L Y+S + +
Sbjct: 244 LRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEG-KAVLVVEHDLAV--LDYLSDVIHV 300
Query: 260 SRGSVVHYG 268
G YG
Sbjct: 301 VYGEPGVYG 309
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355 | Back alignment and structure |
|---|
Score = 67.3 bits (165), Expect = 3e-12
Identities = 35/124 (28%), Positives = 58/124 (46%), Gaps = 19/124 (15%)
Query: 85 HILKSVSFEARDSEILAVVGPSGTGKSSLLRII-------SGRVRDQDFDPRSITVNCHQ 137
++ VSF+ R+ E++ ++GPSG+GK+++LR+I G V + +T
Sbjct: 29 RSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVW---IGGKRVT----- 80
Query: 138 IKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLT 197
P Q R + G V Q L +TV + + F R K + E + RV L+ + L
Sbjct: 81 -DLPPQKRNV-GLVFQNYALFQHMTVYDNVSFG--LREKRVPKDEMDARVRELLRFMRLE 136
Query: 198 HVAG 201
A
Sbjct: 137 SYAN 140
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 68.1 bits (167), Expect = 4e-12
Identities = 39/206 (18%), Positives = 69/206 (33%), Gaps = 44/206 (21%)
Query: 85 HILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKKPAQL 144
L+ E + E++ +VGP+G GK++ +++++G I + KP Q
Sbjct: 300 FRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEP---TEGKIEWDLTVAYKP-QY 355
Query: 145 RKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAGSFV 204
K TV E S L+ LG+ + V
Sbjct: 356 IKAD----------YEGTVYEL------LSKIDASKLNSNFYKTELLKPLGIIDLYDREV 399
Query: 205 ----GDEENR-GI-----------------SGLDSTSALQVIELLASMAKAKQRTVVLSI 242
G E R I + LD L V + + + ++T ++
Sbjct: 400 NELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVE 459
Query: 243 HQPSYRILQYISKFLILSRGSVVHYG 268
H ++ Y+S L++ G YG
Sbjct: 460 H--DVLMIDYVSDRLMVFEGEPGKYG 483
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 55.0 bits (133), Expect = 4e-08
Identities = 32/224 (14%), Positives = 75/224 (33%), Gaps = 53/224 (23%)
Query: 90 VSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPR---SITVNCHQIKK-PAQLR 145
++ ++ +VGP+GTGKS+ ++I++G++ + + +
Sbjct: 40 RLPVVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFE 99
Query: 146 KICG---FVA---QEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHV 199
K+ Q +L+P + + + ++ ++E ++ L L +V
Sbjct: 100 KLKNGEIRPVVKPQYVDLIPKAVKGKVIE--------LLKKADETGKLEEVVKALELENV 151
Query: 200 AGSFVGDEENRGISG---------------------------LDSTSALQVIELLASMAK 232
+ +SG LD L + +
Sbjct: 152 LEREIQH-----LSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRL-S 205
Query: 233 AKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGSLELLEET 276
+ ++V++ H + L Y+S + + G YG + T
Sbjct: 206 EEGKSVLVVEHDLAV--LDYLSDIIHVVYGEPGVYGIFSQPKGT 247
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 66.6 bits (163), Expect = 1e-11
Identities = 46/255 (18%), Positives = 95/255 (37%), Gaps = 57/255 (22%)
Query: 57 VTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRI 116
+ + NL ++ + ++H LH L + R ++L +VG +G GKS+ L+I
Sbjct: 70 IQIINLPTNLEAH---VTHRYSANSFKLHRLPTP----RPGQVLGLVGTNGIGKSTALKI 122
Query: 117 ISGRVRDQ--DFDPRSITVNCHQIKKPAQLRKICGFVAQED----------NLLPLLTVK 164
++G+ + FD + + ++L+ + ++D + +P +K
Sbjct: 123 LAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKMLEDDIKAIIKPQYVDNIP-RAIK 181
Query: 165 ETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAGSFVGDEENRGISG---------- 214
+ L + ++ + V+ + L L +V + +SG
Sbjct: 182 GPVQKVG--ELLKLRMEKSPEDVKRYIKILQLENVLKRDIEK-----LSGGELQRFAIGM 234
Query: 215 -----------------LDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFL 257
LD L +++ S+ A + V+ H S L Y+S F+
Sbjct: 235 SCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSL-LAPTKYVICVEHDLSV--LDYLSDFV 291
Query: 258 ILSRGSVVHYGSLEL 272
+ G YG + L
Sbjct: 292 CIIYGVPSVYGVVTL 306
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 61.2 bits (149), Expect = 5e-10
Identities = 31/237 (13%), Positives = 68/237 (28%), Gaps = 45/237 (18%)
Query: 25 SPEEYSTSPSSSFYQPTPSPSLPPQRLKTTCKVTVRNLSYAIQPNTSILSHLLHEPKVPL 84
S E P+ +L + ++ + S+ +
Sbjct: 309 SVREGINIFLDGH---IPAENLRFRTEALQFRIADATEDLQNDSASRAFSYPSLKKTQGD 365
Query: 85 HILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKKPAQL 144
+L E DSEIL ++G +GTGK++L+++++G ++ P +
Sbjct: 366 FVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALK-----PDEGQDIPK--LNVSMK 418
Query: 145 RKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAGSFV 204
+ TV++ + ++ L + + V
Sbjct: 419 PQKIAPKFPG-------TVRQLFFKKIRGQF------LNPQFQTDVVKPLRIDDIIDQEV 465
Query: 205 GD----EENR-GI-----------------SGLDSTSALQVIELLASMAKAKQRTVV 239
E R I + LDS + +++ ++T
Sbjct: 466 QHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAF 522
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 65.3 bits (158), Expect = 5e-11
Identities = 63/466 (13%), Positives = 132/466 (28%), Gaps = 148/466 (31%)
Query: 83 PLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRS------ITV-NC 135
P L+ E R ++ + + G G+GK+ + + + + NC
Sbjct: 136 PYLKLRQALLELRPAKNVLIDGVLGSGKTWV---ALDVCLSYKVQCKMDFKIFWLNLKNC 192
Query: 136 HQIKK-PAQLRKIC-----GFVAQEDNL----LPLLTVKE---TLMFSANFR-----LKG 177
+ + L+K+ + ++ D+ L + +++ L+ S + L
Sbjct: 193 NSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLN 252
Query: 178 MSHKEKED------------RVESLMDELG--------LTHVAGSFVGDEE--------N 209
+ + + + R + + D L L H + + DE +
Sbjct: 253 VQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLD 312
Query: 210 RGISGLDSTSALQVIELLASMAKAKQRTVVLSI----HQPSYRILQYISKFL-ILS---- 260
L L S+ R + + H ++ I L +L
Sbjct: 313 CRPQDL-PREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEY 371
Query: 261 RGSVVHYGSLELLEETINNLGYQIPTQLNAI-------EFAMEIMHPLEDSYS----NNN 309
R + L + + + IPT L ++ M +++ L YS
Sbjct: 372 RK---MFDRLSVFPPSAH-----IPTILLSLIWFDVIKSDVMVVVNKLH-KYSLVEKQPK 422
Query: 310 NFLPSVEDAEQFPDLRCEKVGGVEHQQHAFFLILYEIMVLCSRFWKI--------IYRTK 361
S+ +L+ + E+ H + Y I + Y
Sbjct: 423 ESTISIPSIYL--ELKVKLEN--EYALHRSIVDHYNIP-KTFDSDDLIPPYLDQYFYS-- 475
Query: 362 QLFLARTMQALVGGFGLGSVYVRVRKDEAGVAERLGLFA---FSLSFL------------ 406
+ + ER+ LF FL
Sbjct: 476 --HIGHHL------------------KNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWN 515
Query: 407 ----LSSTVEALPIYLQERRVLMKEASREAYRISSYLIANTIVFLP 448
+ +T++ L Y + + + E +++ L FLP
Sbjct: 516 ASGSILNTLQQLKFY--KPYICDNDPKYERL-VNAIL-----DFLP 553
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 63.9 bits (156), Expect = 8e-11
Identities = 40/210 (19%), Positives = 71/210 (33%), Gaps = 42/210 (20%)
Query: 81 KVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKK 140
K+ L + EA++ EI+ ++GP+G GK++ RI+ G + D S+T +
Sbjct: 278 KLGDFQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITA---DEGSVTPEKQILSY 334
Query: 141 PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVA 200
Q F + + L S + E + L L +
Sbjct: 335 KPQRI----FPNYDGTVQQYLENASKDALSTS-----------SWFFEEVTKRLNLHRLL 379
Query: 201 GSFV----GDEENR-GI-----------------SGLDSTSALQVIELLASMAKAKQRTV 238
S V G E + I S LD V + + + + ++
Sbjct: 380 ESNVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVT 439
Query: 239 VLSIHQPSYRILQYISKFLILSRGSVVHYG 268
+ H I YI+ +I+ +G G
Sbjct: 440 FIIDH--DLSIHDYIADRIIVFKGEPEKAG 467
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 62.0 bits (151), Expect = 3e-10
Identities = 33/216 (15%), Positives = 82/216 (37%), Gaps = 45/216 (20%)
Query: 87 LKSVSFEA-RDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKKPAQLR 145
K +++ IL V+G +G GK+++L+I++G + +F + V ++ K + +
Sbjct: 14 FKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIP-NFGDPNSKVGKDEVLKRFRGK 72
Query: 146 KICGFVAQE---DNLLPLLTVKETLMFSANFRL---KGMSHKEKEDRVESLMDELGLTHV 199
+I +E + L + ++ S + + ++ ++ + + + + L +T++
Sbjct: 73 EI-YNYFKELYSNELKIVHKIQYVEYASKFLKGTVNEILTKIDERGKKDEVKELLNMTNL 131
Query: 200 AGSFVGDEENRGISG---------------------------LDSTSALQVIELLASMAK 232
+SG LD + + + + + K
Sbjct: 132 WNKDANI-----LSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLK 186
Query: 233 AKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYG 268
K V++ H L Y++ + + G YG
Sbjct: 187 NK--YVIVVDHDLIV--LDYLTDLIHIIYGESSVYG 218
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 60.5 bits (148), Expect = 2e-10
Identities = 32/113 (28%), Positives = 50/113 (44%), Gaps = 10/113 (8%)
Query: 83 PLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQD----FDPRSIT-VNCHQ 137
+H +K + + +I+ ++G +G GK++ L I+G VR Q F+ + IT H
Sbjct: 18 AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHV 77
Query: 138 IKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESL 190
I R V + + P LTV E LM A R K + + SL
Sbjct: 78 I-----NRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSL 125
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263 | Back alignment and structure |
|---|
Score = 60.8 bits (148), Expect = 2e-10
Identities = 28/116 (24%), Positives = 53/116 (45%), Gaps = 19/116 (16%)
Query: 85 HILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRS--ITVNCHQIKKPA 142
L++++ E + E + ++GP+G+GK++LLR ISG P S I +N +++K
Sbjct: 19 FSLENINLEV-NGEKVIILGPNGSGKTTLLRAISG------LLPYSGNIFINGMEVRK-- 69
Query: 143 QLRKICGFVAQEDNLLPL-LTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLT 197
+R + + +TV + + LKG+ D ++ L L
Sbjct: 70 -IRNYIRYSTNLPEAYEIGVTVNDIVYLYE--ELKGLD----RDLFLEMLKALKLG 118
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 60.3 bits (147), Expect = 2e-10
Identities = 34/119 (28%), Positives = 55/119 (46%), Gaps = 22/119 (18%)
Query: 89 SVSFEARDSEILAVVGPSGTGKSSLLRII-------SGRVRDQDFDPRSITVNCHQIKKP 141
+V FE + ++GP+G GKS L +I G VR + IT P
Sbjct: 17 NVDFEM-GRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVR---LNGADIT------PLP 66
Query: 142 AQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVA 200
+ R I GFV Q+ L P L+V + + L+ + E++ RV + ++LG+ H+
Sbjct: 67 PERRGI-GFVPQDYALFPHLSVYRNIAYG----LRNVERVERDRRVREMAEKLGIAHLL 120
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353 | Back alignment and structure |
|---|
Score = 60.7 bits (148), Expect = 4e-10
Identities = 40/126 (31%), Positives = 56/126 (44%), Gaps = 14/126 (11%)
Query: 80 PKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRII-------SGRVRDQDFDPRSIT 132
K + L +V+ + E ++GPSG GK++ +RII +G + FD R +
Sbjct: 14 KKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELY---FDDRLVA 70
Query: 133 VNCHQIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMD 192
N I P RKI G V Q L P LT E + F MS +E RVE +
Sbjct: 71 SNGKLIVPPED-RKI-GMVFQTWALYPNLTAFENIAFP--LTNMKMSKEEIRKRVEEVAK 126
Query: 193 ELGLTH 198
L + H
Sbjct: 127 ILDIHH 132
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348 | Back alignment and structure |
|---|
Score = 58.3 bits (142), Expect = 2e-09
Identities = 30/123 (24%), Positives = 51/123 (41%), Gaps = 22/123 (17%)
Query: 85 HILKSVSFEARDSEILAVVGPSGTGKSSLLRII-------SGRVRDQDFDPRSITVNCHQ 137
L ++S + E ++GP+G GK+ L +I SGR+ D + +T
Sbjct: 14 FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRIL---LDGKDVT----- 65
Query: 138 IKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLT 197
+ I FV Q +L P + VK+ L F ++ M + RV +L +
Sbjct: 66 -DLSPEKHDI-AFVYQNYSLFPHMNVKKNLEFG----MR-MKKIKDPKRVLDTARDLKIE 118
Query: 198 HVA 200
H+
Sbjct: 119 HLL 121
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260 | Back alignment and structure |
|---|
Score = 53.7 bits (130), Expect = 4e-08
Identities = 18/75 (24%), Positives = 33/75 (44%), Gaps = 14/75 (18%)
Query: 86 ILKSVSFEARDSEILAVVGPSGTGKSSLLRII------SGRVRDQDFDPRSITVNCHQIK 139
LKS++F A+VG +G+GKS++ +++ G ++ + N
Sbjct: 35 TLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDAEGDIKIGGKNVNKYNRNS---- 90
Query: 140 KPAQLRKICGFVAQE 154
+R I G V Q+
Sbjct: 91 ----IRSIIGIVPQD 101
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A Length = 372 | Back alignment and structure |
|---|
Score = 54.2 bits (131), Expect = 5e-08
Identities = 33/121 (27%), Positives = 58/121 (47%), Gaps = 13/121 (10%)
Query: 85 HILKSVSFEARDSEILAVVGPSGTGKSSLLRII-------SGRVRDQDFDPRSITVNCHQ 137
++ +S E +D E + ++GPSG GK++ LR+I G++ + +
Sbjct: 17 TAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIY---IGDKLVADPEKG 73
Query: 138 IKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLT 197
I P + R I V Q L P +TV + + F +L+ + +E + RV + + LGLT
Sbjct: 74 IFVPPKDRDI-AMVFQSYALYPHMTVYDNIAFP--LKLRKVPRQEIDQRVREVAELLGLT 130
Query: 198 H 198
Sbjct: 131 E 131
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306 | Back alignment and structure |
|---|
Score = 53.8 bits (130), Expect = 6e-08
Identities = 29/80 (36%), Positives = 39/80 (48%), Gaps = 16/80 (20%)
Query: 86 ILKSVSFEARDSEILAVVGPSGTGKSSLLRII-------SGRVRDQDFDPRSITVNCHQI 138
L+ VSF + LA+VGPSG GKS++LR++ SG +R D +T
Sbjct: 69 TLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQ----- 123
Query: 139 KKPAQLRKICGFVAQEDNLL 158
A LR G V Q D +L
Sbjct: 124 ---ASLRSHIGVVPQ-DTVL 139
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257 | Back alignment and structure |
|---|
Score = 52.5 bits (127), Expect = 9e-08
Identities = 32/142 (22%), Positives = 58/142 (40%), Gaps = 27/142 (19%)
Query: 84 LHILKSVSFEARDSEILAVVGPSGTGKSSLLRII-------SGRVRDQDFDPRSIT-VNC 135
L VS ++ ++GP+G+GKS+L+ +I GRV F+ + IT
Sbjct: 20 FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVY---FENKDITNKEP 76
Query: 136 HQIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLK---------GMSHKEKE-- 184
++ +R F Q L +TV E L+ + KE+E
Sbjct: 77 AELYHYGIVRT---F--QTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMV 131
Query: 185 DRVESLMDELGLTHVAGSFVGD 206
++ +++ L L+H+ G+
Sbjct: 132 EKAFKILEFLKLSHLYDRKAGE 153
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243 | Back alignment and structure |
|---|
Score = 52.1 bits (126), Expect = 1e-07
Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 15/76 (19%)
Query: 86 ILKSVSFEARDSEILAVVGPSGTGKSSLLRII-------SGRVRDQDFDPRSITVNCHQI 138
IL+ +SFEA+ + I+A GPSG GKS++ ++ +G + +I++
Sbjct: 17 ILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLEN--- 73
Query: 139 KKPAQLRKICGFVAQE 154
R GFV+Q+
Sbjct: 74 -----WRSQIGFVSQD 84
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271 | Back alignment and structure |
|---|
Score = 52.1 bits (126), Expect = 2e-07
Identities = 22/98 (22%), Positives = 45/98 (45%), Gaps = 20/98 (20%)
Query: 80 PKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDF-DPRS--ITVNCH 136
P V +L+ ++F ++ A+VGP+G+GKS++ ++ Q+ P + ++
Sbjct: 30 PNVQ--VLQGLTFTLYPGKVTALVGPNGSGKSTVAALL------QNLYQPTGGKVLLDGE 81
Query: 137 QIKK--PAQLRKICGFVAQEDNLLPLL---TVKETLMF 169
+ + L V QE PLL + +E + +
Sbjct: 82 PLVQYDHHYLHTQVAAVGQE----PLLFGRSFRENIAY 115
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} Length = 362 | Back alignment and structure |
|---|
Score = 52.2 bits (126), Expect = 2e-07
Identities = 33/121 (27%), Positives = 59/121 (48%), Gaps = 19/121 (15%)
Query: 85 HILKSVSFEARDSEILAVVGPSGTGKSSLLRII-------SGRVRDQDFDPRSITVNCHQ 137
L +++ + +D E +A++GPSG+GKS+LL I SG++ FD + +T
Sbjct: 17 TALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIY---FDEKDVT----- 68
Query: 138 IKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLT 197
+ P + R + G V Q L P +TV + + F L+ +E + +V + L +
Sbjct: 69 -ELPPKDRNV-GLVFQNWALYPHMTVYKNIAFP--LELRKAPREEIDKKVREVAKMLHID 124
Query: 198 H 198
Sbjct: 125 K 125
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247 | Back alignment and structure |
|---|
Score = 51.3 bits (124), Expect = 2e-07
Identities = 23/88 (26%), Positives = 45/88 (51%), Gaps = 18/88 (20%)
Query: 86 ILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDF-DPRS--ITVNCHQIKK-- 140
IL +++ + E++ +VG SG+GKS+L ++I Q F P + + ++ H +
Sbjct: 24 ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLI------QRFYIPENGQVLIDGHDLALAD 77
Query: 141 PAQLRKICGFVAQEDNLLPLL---TVKE 165
P LR+ G V Q+ +L ++ +
Sbjct: 78 PNWLRRQVGVVLQD----NVLLNRSIID 101
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} Length = 359 | Back alignment and structure |
|---|
Score = 51.8 bits (125), Expect = 3e-07
Identities = 38/122 (31%), Positives = 60/122 (49%), Gaps = 19/122 (15%)
Query: 84 LHILKSVSFEARDSEILAVVGPSGTGKSSLLRII-------SGRVRDQDFDPRSITVNCH 136
+ + VSFE +D E +A++GPSG GK++ L ++ SG + FD VN
Sbjct: 16 VKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIY---FDDV--LVN-- 68
Query: 137 QIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGL 196
P + R++ G V Q L P +TV E + F R + +S E E RV + +L +
Sbjct: 69 --DIPPKYREV-GMVFQNYALYPHMTVFENIAFP--LRARRISKDEVEKRVVEIARKLLI 123
Query: 197 TH 198
+
Sbjct: 124 DN 125
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* Length = 372 | Back alignment and structure |
|---|
Score = 49.2 bits (118), Expect = 2e-06
Identities = 32/123 (26%), Positives = 52/123 (42%), Gaps = 23/123 (18%)
Query: 85 HILKSVSFEARDSEILAVVGPSGTGKSSLLRII-------SGRVR--DQDFDPRSITVNC 135
+ ++ +D E L ++GPSG GK++ LR+I GR+ D+D V
Sbjct: 25 TAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRD-------VT- 76
Query: 136 HQIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELG 195
P + R I V Q + P +TV E + F ++K E + RV + L
Sbjct: 77 ---YLPPKDRNI-SMVFQSYAVWPHMTVYENIAFP--LKIKKFPKDEIDKRVRWAAELLQ 130
Query: 196 LTH 198
+
Sbjct: 131 IEE 133
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 49.7 bits (119), Expect = 3e-06
Identities = 26/83 (31%), Positives = 47/83 (56%), Gaps = 13/83 (15%)
Query: 80 PKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDF-DPRS--ITVNCH 136
P +P +L+ +S E + + LA+VG SG GKS++++++ + F DP + + ++
Sbjct: 1044 PSIP--VLQGLSLEVKKGQTLALVGSSGCGKSTVVQLL------ERFYDPMAGSVFLDGK 1095
Query: 137 QIKK--PAQLRKICGFVAQEDNL 157
+IK+ LR G V+QE L
Sbjct: 1096 EIKQLNVQWLRAQLGIVSQEPIL 1118
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 47.3 bits (113), Expect = 1e-05
Identities = 27/98 (27%), Positives = 51/98 (52%), Gaps = 20/98 (20%)
Query: 80 PKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDF-DPRS--ITVNCH 136
+V ILK ++ + + + +A+VG SG GKS+ ++++ Q DP ++++
Sbjct: 401 KEVQ--ILKGLNLKVKSGQTVALVGNSGCGKSTTVQLM------QRLYDPLDGMVSIDGQ 452
Query: 137 QIKK--PAQLRKICGFVAQEDNLLPLL---TVKETLMF 169
I+ LR+I G V+QE P+L T+ E + +
Sbjct: 453 DIRTINVRYLREIIGVVSQE----PVLFATTIAENIRY 486
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582 | Back alignment and structure |
|---|
Score = 48.3 bits (116), Expect = 6e-06
Identities = 20/71 (28%), Positives = 38/71 (53%), Gaps = 5/71 (7%)
Query: 86 ILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIK--KPAQ 143
L++++ + + +A+VG SG+GKS++ +I+ R D D I ++ H ++ A
Sbjct: 358 ALRNINLKIPAGKTVALVGRSGSGKSTIASLIT---RFYDIDEGHILMDGHDLREYTLAS 414
Query: 144 LRKICGFVAQE 154
LR V+Q
Sbjct: 415 LRNQVALVSQN 425
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 48.5 bits (115), Expect = 6e-06
Identities = 19/114 (16%), Positives = 38/114 (33%), Gaps = 25/114 (21%)
Query: 85 HILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKKPAQL 144
+L + + + GP+G GKS+L+R I+ D +
Sbjct: 449 ILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQVD-------------GFPTQEEC 495
Query: 145 RKICGFVAQE-DNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLT 197
R +V + D +V + + S ++ ++ + E G T
Sbjct: 496 R--TVYVEHDIDGTHSDTSVLDFVF---------ESGVGTKEAIKDKLIEFGFT 538
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A Length = 381 | Back alignment and structure |
|---|
Score = 47.2 bits (113), Expect = 1e-05
Identities = 35/124 (28%), Positives = 55/124 (44%), Gaps = 23/124 (18%)
Query: 84 LHILKSVSFEARDSEILAVVGPSGTGKSSLLRII-------SGRVR--DQDFDPRSITVN 134
+ + K ++ + + E + VGPSG GKS+LLR+I SG + ++ +N
Sbjct: 16 VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKR-------MN 68
Query: 135 CHQIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDEL 194
P R + G V Q L P L+V E + F +L G + RV + + L
Sbjct: 69 ----DTPPAERGV-GMVFQSYALYPHLSVAENMSFG--LKLAGAKKEVINQRVNQVAEVL 121
Query: 195 GLTH 198
L H
Sbjct: 122 QLAH 125
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582 | Back alignment and structure |
|---|
Score = 47.2 bits (113), Expect = 1e-05
Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 5/71 (7%)
Query: 86 ILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIK--KPAQ 143
L VSF + +A+VG SG+GKS++ + + R D D SI ++ H ++ K
Sbjct: 358 ALSHVSFSIPQGKTVALVGRSGSGKSTIANLFT---RFYDVDSGSICLDGHDVRDYKLTN 414
Query: 144 LRKICGFVAQE 154
LR+ V+Q
Sbjct: 415 LRRHFALVSQN 425
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578 | Back alignment and structure |
|---|
Score = 47.2 bits (113), Expect = 1e-05
Identities = 21/76 (27%), Positives = 32/76 (42%), Gaps = 15/76 (19%)
Query: 86 ILKSVSFEARDSEILAVVGPSGTGKSSLLRII-------SGRVRDQDFDPRSITVNCHQI 138
ILK ++ E +A VG SG GKS+L+ +I SG++ + +
Sbjct: 356 ILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLT----- 410
Query: 139 KKPAQLRKICGFVAQE 154
LR G V Q+
Sbjct: 411 ---GSLRNQIGLVQQD 423
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290 | Back alignment and structure |
|---|
Score = 44.3 bits (105), Expect = 5e-05
Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 7/44 (15%)
Query: 86 ILKSVSFEARDSEILAVVGPSGTGKSSLL-------RIISGRVR 122
+LK ++F+ ++LAV G +G GK+SLL G+++
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIK 96
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229 | Back alignment and structure |
|---|
Score = 43.7 bits (104), Expect = 7e-05
Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 7/44 (15%)
Query: 86 ILKSVSFEARDSEILAVVGPSGTGKSSLL-------RIISGRVR 122
+LK ++F+ ++LAV G +G GK+SLL G+++
Sbjct: 23 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIK 66
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 587 | Back alignment and structure |
|---|
Score = 44.9 bits (107), Expect = 7e-05
Identities = 25/96 (26%), Positives = 43/96 (44%), Gaps = 26/96 (27%)
Query: 86 ILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPR-------SITVNCHQI 138
+L V+F + ++AV+G +G+GKS+L+ +I PR + V+ +
Sbjct: 358 VLSGVNFSVKPGSLVAVLGETGSGKSTLMNLI----------PRLIDPERGRVEVDELDV 407
Query: 139 KK--PAQLRKICGFVAQEDNLLPLL---TVKETLMF 169
+ LR V QE +L T+KE L +
Sbjct: 408 RTVKLKDLRGHISAVPQE----TVLFSGTIKENLKW 439
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237 | Back alignment and structure |
|---|
Score = 43.3 bits (103), Expect = 9e-05
Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 7/44 (15%)
Query: 86 ILKSVSFEARDSEILAVVGPSGTGKSSLL-------RIISGRVR 122
L ++F + ++AVVG G GKSSLL + G V
Sbjct: 20 TLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVA 63
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* Length = 250 | Back alignment and structure |
|---|
Score = 41.0 bits (97), Expect = 7e-04
Identities = 15/35 (42%), Positives = 24/35 (68%)
Query: 86 ILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGR 120
ILK V+ E+ A++GP+G GKS+L +I++G
Sbjct: 18 ILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGD 52
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A Length = 267 | Back alignment and structure |
|---|
Score = 40.6 bits (96), Expect = 7e-04
Identities = 14/35 (40%), Positives = 25/35 (71%)
Query: 86 ILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGR 120
IL+ +S + E+ A++GP+G+GKS+L ++GR
Sbjct: 35 ILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGR 69
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 627 | |||
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 100.0 | |
| 3rlf_A | 381 | Maltose/maltodextrin import ATP-binding protein M; | 100.0 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 100.0 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 100.0 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 100.0 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 100.0 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 100.0 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 100.0 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 100.0 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 100.0 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 100.0 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 100.0 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 100.0 | |
| 4g1u_C | 266 | Hemin import ATP-binding protein HMUV; membrane tr | 100.0 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 100.0 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 100.0 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 100.0 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 100.0 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 100.0 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 100.0 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 100.0 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 100.0 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 100.0 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 100.0 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 100.0 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 100.0 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 100.0 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 100.0 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 100.0 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 100.0 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 100.0 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 100.0 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 100.0 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 100.0 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 100.0 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 100.0 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 100.0 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 100.0 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 100.0 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 100.0 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 100.0 | |
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 99.98 | |
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 99.97 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 99.97 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 99.96 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 99.96 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 99.95 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 99.95 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 99.94 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 99.93 | |
| 3ux8_A | 670 | Excinuclease ABC, A subunit; UVRA, nucleotide exci | 99.92 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 99.92 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 99.92 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 99.92 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 99.91 | |
| 3ux8_A | 670 | Excinuclease ABC, A subunit; UVRA, nucleotide exci | 99.9 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 99.86 | |
| 2vf7_A | 842 | UVRA2, excinuclease ABC, subunit A.; DNA-binding p | 99.86 | |
| 3pih_A | 916 | Uvrabc system protein A; hydrolase, ABC ATPase, DN | 99.85 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 99.85 | |
| 2r6f_A | 972 | Excinuclease ABC subunit A; UVRA, nucleotide excis | 99.85 | |
| 2ygr_A | 993 | Uvrabc system protein A; hydrolase, nucleotide exc | 99.84 | |
| 2npi_A | 460 | Protein CLP1; CLP1-PCF11 complex, ATP binding, ter | 99.84 | |
| 1znw_A | 207 | Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans | 99.82 | |
| 2dpy_A | 438 | FLII, flagellum-specific ATP synthase; beta barrel | 99.81 | |
| 4aby_A | 415 | DNA repair protein RECN; hydrolase, double strand | 99.78 | |
| 2v9p_A | 305 | Replication protein E1; AAA+ molecular motor, DNA | 99.76 | |
| 2obl_A | 347 | ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O | 99.73 | |
| 3b85_A | 208 | Phosphate starvation-inducible protein; PHOH2, ATP | 99.71 | |
| 1tq4_A | 413 | IIGP1, interferon-inducible GTPase; interferon gam | 99.71 | |
| 1tf7_A | 525 | KAIC; homohexamer, hexamer, circadian clock protei | 99.69 | |
| 1z6g_A | 218 | Guanylate kinase; structural genomics, SGC, struct | 99.64 | |
| 3b9q_A | 302 | Chloroplast SRP receptor homolog, alpha subunit CP | 99.63 | |
| 3qf7_A | 365 | RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1. | 99.63 | |
| 2jeo_A | 245 | Uridine-cytidine kinase 1; UCK, transferase, ATP-b | 99.62 | |
| 3sop_A | 270 | Neuronal-specific septin-3; hydrolase; HET: GDP; 2 | 99.62 | |
| 4gp7_A | 171 | Metallophosphoesterase; polynucleotide kinase phos | 99.6 | |
| 1e69_A | 322 | Chromosome segregation SMC protein; structural mai | 99.58 | |
| 2ehv_A | 251 | Hypothetical protein PH0186; KAIC, RECA ATPase, un | 99.58 | |
| 2og2_A | 359 | Putative signal recognition particle receptor; nuc | 99.57 | |
| 4a74_A | 231 | DNA repair and recombination protein RADA; hydrola | 99.56 | |
| 2pt7_A | 330 | CAG-ALFA; ATPase, protein-protein complex, type IV | 99.55 | |
| 1cr0_A | 296 | DNA primase/helicase; RECA-type protein fold, tran | 99.54 | |
| 3aez_A | 312 | Pantothenate kinase; transferase, homodimer, COA b | 99.52 | |
| 1htw_A | 158 | HI0065; nucleotide-binding fold, structural genomi | 99.52 | |
| 3szr_A | 608 | Interferon-induced GTP-binding protein MX1; interf | 99.51 | |
| 1s96_A | 219 | Guanylate kinase, GMP kinase; E.coli, dimer, SAD, | 99.49 | |
| 2o8b_B | 1022 | DNA mismatch repair protein MSH6; DNA damage respo | 99.45 | |
| 2qnr_A | 301 | Septin-2, protein NEDD5; structural genomics conso | 99.44 | |
| 1ye8_A | 178 | Protein THEP1, hypothetical UPF0334 kinase-like pr | 99.42 | |
| 1rj9_A | 304 | FTSY, signal recognition protein; SRP-GTPase domai | 99.41 | |
| 2gza_A | 361 | Type IV secretion system protein VIRB11; ATPase, h | 99.4 | |
| 3thx_A | 934 | DNA mismatch repair protein MSH2; ABC family ATPas | 99.39 | |
| 3asz_A | 211 | Uridine kinase; cytidine phosphorylation, transfer | 99.39 | |
| 2bdt_A | 189 | BH3686; alpha-beta protein, structural genomics, P | 99.36 | |
| 1wb9_A | 800 | DNA mismatch repair protein MUTS; DNA-binding, ATP | 99.36 | |
| 1pzn_A | 349 | RAD51, DNA repair and recombination protein RAD51, | 99.34 | |
| 2eyu_A | 261 | Twitching motility protein PILT; pilus retraction | 99.33 | |
| 2w0m_A | 235 | SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus | 99.33 | |
| 2yhs_A | 503 | FTSY, cell division protein FTSY; cell cycle, prot | 99.32 | |
| 1tf7_A | 525 | KAIC; homohexamer, hexamer, circadian clock protei | 99.29 | |
| 3e70_C | 328 | DPA, signal recognition particle receptor; FTSY, S | 99.27 | |
| 3thx_B | 918 | DNA mismatch repair protein MSH3; ABC family ATPas | 99.27 | |
| 1ewq_A | 765 | DNA mismatch repair protein MUTS; multiple domains | 99.26 | |
| 2o5v_A | 359 | DNA replication and repair protein RECF; ABC ATPas | 99.23 | |
| 1lw7_A | 365 | Transcriptional regulator NADR; NMN, NMN adenylyl | 99.17 | |
| 2qag_B | 427 | Septin-6, protein NEDD5; cell cycle, cell division | 99.16 | |
| 3qkt_A | 339 | DNA double-strand break repair RAD50 ATPase; RECA- | 99.16 | |
| 4ad8_A | 517 | DNA repair protein RECN; DNA binding protein, ATPa | 99.15 | |
| 2yv5_A | 302 | YJEQ protein; hydrolase, GTPase, permutation, stru | 99.15 | |
| 2oap_1 | 511 | GSPE-2, type II secretion system protein; hexameri | 99.15 | |
| 2rcn_A | 358 | Probable GTPase ENGC; YJEQ, circularly permuted, G | 99.14 | |
| 2qag_C | 418 | Septin-7; cell cycle, cell division, GTP-binding, | 99.13 | |
| 1n0w_A | 243 | DNA repair protein RAD51 homolog 1; DNA repair, ho | 99.12 | |
| 2i3b_A | 189 | HCR-ntpase, human cancer-related ntpase; AAA, ross | 99.12 | |
| 1u0l_A | 301 | Probable GTPase ENGC; permutation, OB-fold, zinc-f | 99.12 | |
| 1zp6_A | 191 | Hypothetical protein ATU3015; alpha-beta protein., | 99.1 | |
| 3jvv_A | 356 | Twitching mobility protein; hexameric P-loop ATPas | 99.1 | |
| 1sq5_A | 308 | Pantothenate kinase; P-loop, transferase; HET: PAU | 99.1 | |
| 3pih_A | 916 | Uvrabc system protein A; hydrolase, ABC ATPase, DN | 99.07 | |
| 1pui_A | 210 | ENGB, probable GTP-binding protein ENGB; structura | 99.07 | |
| 2r6f_A | 972 | Excinuclease ABC subunit A; UVRA, nucleotide excis | 99.02 | |
| 1nlf_A | 279 | Regulatory protein REPA; replicative DNA helicase | 99.01 | |
| 2ewv_A | 372 | Twitching motility protein PILT; pilus retraction | 99.01 | |
| 1t9h_A | 307 | YLOQ, probable GTPase ENGC; N-terminal beta-barrel | 98.99 | |
| 2qm8_A | 337 | GTPase/ATPase; G protein, G3E, metallochaperone, c | 98.98 | |
| 3lda_A | 400 | DNA repair protein RAD51; DNA binding protein, ATP | 98.96 | |
| 3euj_A | 483 | Chromosome partition protein MUKB, linker; MUKB, M | 98.95 | |
| 1p9r_A | 418 | General secretion pathway protein E; bacterial typ | 98.94 | |
| 2ygr_A | 993 | Uvrabc system protein A; hydrolase, nucleotide exc | 98.93 | |
| 1nij_A | 318 | Hypothetical protein YJIA; structural genomics, P- | 98.93 | |
| 2bbw_A | 246 | Adenylate kinase 4, AK4; nucleotide kinase, nucleo | 98.92 | |
| 2vf7_A | 842 | UVRA2, excinuclease ABC, subunit A.; DNA-binding p | 98.91 | |
| 1in4_A | 334 | RUVB, holliday junction DNA helicase RUVB; AAA+-cl | 98.91 | |
| 3tr0_A | 205 | Guanylate kinase, GMP kinase; purines, pyrimidines | 98.88 | |
| 2cvh_A | 220 | DNA repair and recombination protein RADB; filamen | 98.87 | |
| 1ni3_A | 392 | YCHF GTPase, YCHF GTP-binding protein; structural | 98.78 | |
| 1qhl_A | 227 | Protein (cell division protein MUKB); SMC, chromos | 98.78 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 98.72 | |
| 1sxj_E | 354 | Activator 1 40 kDa subunit; clamp loader, processi | 98.7 | |
| 2dr3_A | 247 | UPF0273 protein PH0284; RECA superfamily ATPase, h | 98.68 | |
| 2x8a_A | 274 | Nuclear valosin-containing protein-like; nuclear p | 98.68 | |
| 2kjq_A | 149 | DNAA-related protein; solution structure, NESG, st | 98.63 | |
| 1udx_A | 416 | The GTP-binding protein OBG; TGS domain, riken str | 98.62 | |
| 4eun_A | 200 | Thermoresistant glucokinase; putative sugar kinase | 98.62 | |
| 3lnc_A | 231 | Guanylate kinase, GMP kinase; ALS collaborative cr | 98.59 | |
| 3kta_A | 182 | Chromosome segregation protein SMC; structural mai | 98.58 | |
| 1iy2_A | 278 | ATP-dependent metalloprotease FTSH; AAA domain fol | 98.48 | |
| 1ixz_A | 254 | ATP-dependent metalloprotease FTSH; AAA domain fol | 98.47 | |
| 2f1r_A | 171 | Molybdopterin-guanine dinucleotide biosynthesis pr | 98.46 | |
| 3hr8_A | 356 | Protein RECA; alpha and beta proteins (A/B, A+B), | 98.44 | |
| 3nwj_A | 250 | ATSK2; P loop, shikimate, nucleoside monophosphate | 98.44 | |
| 3c8u_A | 208 | Fructokinase; YP_612366.1, putative fructose trans | 98.44 | |
| 2px0_A | 296 | Flagellar biosynthesis protein FLHF; SRP GTPase, f | 98.42 | |
| 1odf_A | 290 | YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser | 98.38 | |
| 1f2t_B | 148 | RAD50 ABC-ATPase; DNA double-strand break repair, | 98.34 | |
| 1zu4_A | 320 | FTSY; GTPase, signal recognition particle, SRP, re | 98.33 | |
| 3uie_A | 200 | Adenylyl-sulfate kinase 1, chloroplastic; rossmann | 98.32 | |
| 1lvg_A | 198 | Guanylate kinase, GMP kinase; transferase; HET: AD | 98.28 | |
| 4e22_A | 252 | Cytidylate kinase; P-loop, CMP/ATP binding, transf | 98.25 | |
| 3a00_A | 186 | Guanylate kinase, GMP kinase; domain movement, dim | 98.19 | |
| 3vaa_A | 199 | Shikimate kinase, SK; structural genomics, center | 98.18 | |
| 1knq_A | 175 | Gluconate kinase; ALFA/beta structure, transferase | 98.18 | |
| 2j41_A | 207 | Guanylate kinase; GMP, GMK, transferase, ATP-bindi | 98.11 | |
| 2r6a_A | 454 | DNAB helicase, replicative helicase; replication, | 98.1 | |
| 2zr9_A | 349 | Protein RECA, recombinase A; recombination, RECA m | 98.06 | |
| 1kgd_A | 180 | CASK, peripheral plasma membrane CASK; maguk, guan | 98.01 | |
| 2ius_A | 512 | DNA translocase FTSK; nucleotide-binding, chromoso | 97.97 | |
| 2vp4_A | 230 | Deoxynucleoside kinase; ATP-binding, DNA synthesis | 97.95 | |
| 3tau_A | 208 | Guanylate kinase, GMP kinase; structural genomics, | 97.87 | |
| 1rz3_A | 201 | Hypothetical protein rbstp0775; MCSG, structural g | 97.84 | |
| 1svm_A | 377 | Large T antigen; AAA+ fold, viral protein; HET: AT | 97.8 | |
| 3tqc_A | 321 | Pantothenate kinase; biosynthesis of cofactors, pr | 97.77 | |
| 3ney_A | 197 | 55 kDa erythrocyte membrane protein; structural ge | 97.77 | |
| 1w1w_A | 430 | Structural maintenance of chromosome 1; cohesin, c | 97.72 | |
| 2qt1_A | 207 | Nicotinamide riboside kinase 1; non-protein kinase | 97.69 | |
| 1cke_A | 227 | CK, MSSA, protein (cytidine monophosphate kinase); | 97.67 | |
| 3k1j_A | 604 | LON protease, ATP-dependent protease LON; ATP-bind | 97.67 | |
| 3cr8_A | 552 | Sulfate adenylyltranferase, adenylylsulfate kinase | 97.65 | |
| 2dy1_A | 665 | Elongation factor G; translocation, GTP complex, s | 97.65 | |
| 1kag_A | 173 | SKI, shikimate kinase I; transferase, structural g | 97.61 | |
| 1vma_A | 306 | Cell division protein FTSY; TM0570, structural gen | 97.6 | |
| 1oix_A | 191 | RAS-related protein RAB-11A; small G protein, intr | 97.59 | |
| 1ls1_A | 295 | Signal recognition particle protein; FFH, SRP54, S | 97.59 | |
| 1f2t_A | 149 | RAD50 ABC-ATPase; DNA double-strand break repair, | 97.55 | |
| 3kta_B | 173 | Chromosome segregation protein SMC; structural mai | 97.52 | |
| 2dhr_A | 499 | FTSH; AAA+ protein, hexameric Zn metalloprotease, | 97.52 | |
| 3ice_A | 422 | Transcription termination factor RHO; transcriptio | 97.45 | |
| 2p67_A | 341 | LAO/AO transport system kinase; ARGK, structural G | 97.42 | |
| 2f9l_A | 199 | RAB11B, member RAS oncogene family; RAB11B GTPase, | 97.36 | |
| 4eaq_A | 229 | DTMP kinase, thymidylate kinase; structural genomi | 97.34 | |
| 2pez_A | 179 | Bifunctional 3'-phosphoadenosine 5'- phosphosulfat | 97.29 | |
| 3m6a_A | 543 | ATP-dependent protease LA 1; alpha, beta, ATP-bind | 97.29 | |
| 1mky_A | 439 | Probable GTP-binding protein ENGA; GTPase, DER, KH | 97.26 | |
| 2www_A | 349 | Methylmalonic aciduria type A protein, mitochondri | 97.22 | |
| 3qks_A | 203 | DNA double-strand break repair RAD50 ATPase; RECA- | 97.16 | |
| 2qag_A | 361 | Septin-2, protein NEDD5; cell cycle, cell division | 97.08 | |
| 1np6_A | 174 | Molybdopterin-guanine dinucleotide biosynthesis pr | 97.05 | |
| 1jjv_A | 206 | Dephospho-COA kinase; P-loop nucleotide-binding fo | 97.02 | |
| 2ffh_A | 425 | Protein (FFH); SRP54, signal recognition particle, | 96.97 | |
| 1y63_A | 184 | LMAJ004144AAA protein; structural genomics, protei | 96.97 | |
| 2qor_A | 204 | Guanylate kinase; phosphotransferase, purine metab | 96.93 | |
| 1m7g_A | 211 | Adenylylsulfate kinase; APS kinase, transferase, s | 96.9 | |
| 3auy_A | 371 | DNA double-strand break repair RAD50 ATPase; DNA r | 96.85 | |
| 3auy_A | 371 | DNA double-strand break repair RAD50 ATPase; DNA r | 96.85 | |
| 2gj8_A | 172 | MNME, tRNA modification GTPase TRME; G-domain dime | 96.84 | |
| 3t34_A | 360 | Dynamin-related protein 1A, linker, dynamin-relat | 96.82 | |
| 2if2_A | 204 | Dephospho-COA kinase; alpha-beta protein, structur | 96.81 | |
| 1sxj_C | 340 | Activator 1 40 kDa subunit; clamp loader, processi | 96.79 | |
| 3k53_A | 271 | Ferrous iron transport protein B; GTPase fold, hel | 96.77 | |
| 2yvu_A | 186 | Probable adenylyl-sulfate kinase; transferase, str | 96.77 | |
| 1m2o_B | 190 | GTP-binding protein SAR1, GTP binding protein; zin | 96.73 | |
| 1j8m_F | 297 | SRP54, signal recognition 54 kDa protein; signalin | 96.69 | |
| 2ga8_A | 359 | Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn | 96.69 | |
| 1ega_A | 301 | Protein (GTP-binding protein ERA); GTPase, RNA-bin | 96.6 | |
| 2p5t_B | 253 | PEZT; postsegregational killing system, phosphoryl | 96.6 | |
| 3cm0_A | 186 | Adenylate kinase; ATP-binding, cytoplasm, nucleoti | 96.55 | |
| 1w1w_A | 430 | Structural maintenance of chromosome 1; cohesin, c | 96.54 | |
| 2qtf_A | 364 | Protein HFLX, GTP-binding protein; beta-alpha-barr | 96.53 | |
| 3t61_A | 202 | Gluconokinase; PSI-biology, structural genomics, p | 96.53 | |
| 2wji_A | 165 | Ferrous iron transport protein B homolog; membrane | 96.53 | |
| 1f6b_A | 198 | SAR1; gtpases, N-terminal helix, Mg-containing com | 96.51 | |
| 1lv7_A | 257 | FTSH; alpha/beta domain, four helix bundle, hydrol | 96.47 | |
| 1q3t_A | 236 | Cytidylate kinase; nucleotide monophosphate kinase | 96.37 | |
| 3kb2_A | 173 | SPBC2 prophage-derived uncharacterized protein YOR | 96.35 | |
| 1qhx_A | 178 | CPT, protein (chloramphenicol phosphotransferase); | 96.34 | |
| 1u94_A | 356 | RECA protein, recombinase A; homologous recombinat | 96.23 | |
| 2zej_A | 184 | Dardarin, leucine-rich repeat kinase 2; parkinson' | 96.23 | |
| 2wjg_A | 188 | FEOB, ferrous iron transport protein B homolog; me | 96.22 | |
| 2ohf_A | 396 | Protein OLA1, GTP-binding protein 9; ATPase, GTPas | 96.19 | |
| 3r20_A | 233 | Cytidylate kinase; structural genomics, seattle st | 96.16 | |
| 1kht_A | 192 | Adenylate kinase; phosphotransferase, signaling pr | 96.15 | |
| 1xjc_A | 169 | MOBB protein homolog; structural genomics, midwest | 96.09 | |
| 4a1f_A | 338 | DNAB helicase, replicative DNA helicase; hydrolase | 96.08 | |
| 2rhm_A | 193 | Putative kinase; P-loop containing nucleoside trip | 96.03 | |
| 1vht_A | 218 | Dephospho-COA kinase; structural genomics, transfe | 96.0 | |
| 2ze6_A | 253 | Isopentenyl transferase; crown GALL tumor, cytokin | 95.99 | |
| 1ypw_A | 806 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 95.98 | |
| 1ex7_A | 186 | Guanylate kinase; substrate-induced FIT, domain mo | 95.97 | |
| 3lw7_A | 179 | Adenylate kinase related protein (ADKA-like); AMP, | 95.96 | |
| 3trf_A | 185 | Shikimate kinase, SK; amino acid biosynthesis, tra | 95.92 | |
| 2jaq_A | 205 | Deoxyguanosine kinase; transferase, deoxyribonucle | 95.88 | |
| 1gvn_B | 287 | Zeta; postsegregational killing system, plasmid; 1 | 95.86 | |
| 3iij_A | 180 | Coilin-interacting nuclear ATPase protein; alpha a | 95.83 | |
| 2v54_A | 204 | DTMP kinase, thymidylate kinase; nucleotide biosyn | 95.82 | |
| 2plr_A | 213 | DTMP kinase, probable thymidylate kinase; TMP-bind | 95.79 | |
| 3lxx_A | 239 | GTPase IMAP family member 4; structural genomics c | 95.77 | |
| 1uf9_A | 203 | TT1252 protein; P-loop, nucleotide binding domain, | 95.74 | |
| 1via_A | 175 | Shikimate kinase; structural genomics, transferase | 95.72 | |
| 1ly1_A | 181 | Polynucleotide kinase; PNK, phosphatase, transfera | 95.7 | |
| 2q6t_A | 444 | DNAB replication FORK helicase; hydrolase; 2.90A { | 95.68 | |
| 2wwf_A | 212 | Thymidilate kinase, putative; transferase, malaria | 95.68 | |
| 3cmw_A | 1706 | Protein RECA, recombinase A; homologous recombinat | 95.66 | |
| 2c95_A | 196 | Adenylate kinase 1; transferase, AP4A, nucleotide | 95.63 | |
| 1gtv_A | 214 | TMK, thymidylate kinase; transferase, transferase | 95.61 | |
| 3cf0_A | 301 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 95.56 | |
| 1tev_A | 196 | UMP-CMP kinase; ploop, NMP binding region, LID reg | 95.56 | |
| 1nn5_A | 215 | Similar to deoxythymidylate kinase (thymidylate K; | 95.53 | |
| 3kl4_A | 433 | SRP54, signal recognition 54 kDa protein; signal r | 95.51 | |
| 1nks_A | 194 | Adenylate kinase; thermophilic, transferase; HET: | 95.44 | |
| 3bgw_A | 444 | DNAB-like replicative helicase; ATPase, replicatio | 95.38 | |
| 1ko7_A | 314 | HPR kinase/phosphatase; protein kinase, phosphotra | 95.34 | |
| 2z0h_A | 197 | DTMP kinase, thymidylate kinase; ATP-binding, nucl | 95.31 | |
| 3ake_A | 208 | Cytidylate kinase; CMP kinase, CMP complex, open c | 95.3 | |
| 2bwj_A | 199 | Adenylate kinase 5; phosphoryl transfer reaction, | 95.29 | |
| 2vli_A | 183 | Antibiotic resistance protein; transferase, tunica | 95.28 | |
| 1aky_A | 220 | Adenylate kinase; ATP:AMP phosphotransferase, myok | 95.22 | |
| 2ged_A | 193 | SR-beta, signal recognition particle receptor beta | 95.18 | |
| 2ce7_A | 476 | Cell division protein FTSH; metalloprotease; HET: | 95.15 | |
| 4ag6_A | 392 | VIRB4 ATPase, type IV secretory pathway VIRB4 comp | 95.12 | |
| 2nzj_A | 175 | GTP-binding protein REM 1; GDP/GTP binding, GTP hy | 95.1 | |
| 1z2a_A | 168 | RAS-related protein RAB-23; RAB GTPase, vesicular | 95.09 | |
| 1zd8_A | 227 | GTP:AMP phosphotransferase mitochondrial; ATP:AMP | 95.07 | |
| 2erx_A | 172 | GTP-binding protein DI-RAS2; GTP hydrolysis, trans | 95.06 | |
| 3llm_A | 235 | ATP-dependent RNA helicase A; alpha-beta-alpha, st | 95.05 | |
| 3q72_A | 166 | GTP-binding protein RAD; G-domain, CAV2 beta, sign | 95.04 | |
| 3fb4_A | 216 | Adenylate kinase; psychrophIle, phosphotransferase | 95.03 | |
| 1xp8_A | 366 | RECA protein, recombinase A; recombination, radior | 95.0 | |
| 2cdn_A | 201 | Adenylate kinase; phosphoryl transfer, associative | 95.0 | |
| 3b1v_A | 272 | Ferrous iron uptake transporter protein B; G prote | 94.99 | |
| 2dyk_A | 161 | GTP-binding protein; GTPase, ribosome-binding prot | 94.98 | |
| 1kao_A | 167 | RAP2A; GTP-binding protein, small G protein, GDP, | 94.98 | |
| 3q85_A | 169 | GTP-binding protein REM 2; G-domain, CAV2 beta, si | 94.98 | |
| 2pbr_A | 195 | DTMP kinase, thymidylate kinase; transferase, nucl | 94.97 | |
| 1u8z_A | 168 | RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH | 94.94 | |
| 1e6c_A | 173 | Shikimate kinase; phosphoryl transfer, ADP, shikim | 94.94 | |
| 1ukz_A | 203 | Uridylate kinase; transferase; HET: ADP AMP; 1.90A | 94.93 | |
| 1zuh_A | 168 | Shikimate kinase; alpha-beta protein, transferase; | 94.93 | |
| 2ce2_X | 166 | GTPase HRAS; signaling protein, guanine nucleotide | 94.9 | |
| 1fzq_A | 181 | ADP-ribosylation factor-like protein 3; protein-GD | 94.89 | |
| 1z0j_A | 170 | RAB-22, RAS-related protein RAB-22A; RAB GTPase, R | 94.89 | |
| 3tw8_B | 181 | RAS-related protein RAB-35; longin domain, RAB GTP | 94.87 | |
| 2pt5_A | 168 | Shikimate kinase, SK; aromatic amino acid biosynth | 94.87 | |
| 1z08_A | 170 | RAS-related protein RAB-21; RAB GTPase, vesicular | 94.86 | |
| 3dl0_A | 216 | Adenylate kinase; phosphotransferase, zinc coordin | 94.85 | |
| 2lkc_A | 178 | Translation initiation factor IF-2; NMR {Geobacill | 94.84 | |
| 1ek0_A | 170 | Protein (GTP-binding protein YPT51); vesicular tra | 94.83 | |
| 3a4m_A | 260 | L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m | 94.83 | |
| 3lxw_A | 247 | GTPase IMAP family member 1; immunity, structural | 94.82 | |
| 1v5w_A | 343 | DMC1, meiotic recombination protein DMC1/LIM15 hom | 94.82 | |
| 1zak_A | 222 | Adenylate kinase; ATP:AMP-phosphotransferase, tran | 94.82 | |
| 1c1y_A | 167 | RAS-related protein RAP-1A; GTP-binding proteins, | 94.81 | |
| 1wms_A | 177 | RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p | 94.81 | |
| 1ky3_A | 182 | GTP-binding protein YPT7P; vesicular traffic, GTP | 94.8 | |
| 2iyv_A | 184 | Shikimate kinase, SK; transferase, aromatic amino | 94.8 | |
| 1qf9_A | 194 | UMP/CMP kinase, protein (uridylmonophosphate/cytid | 94.78 | |
| 1jal_A | 363 | YCHF protein; nucleotide-binding fold, structural | 94.77 | |
| 1g16_A | 170 | RAS-related protein SEC4; G protein RAB, signaling | 94.76 | |
| 1svi_A | 195 | GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro | 94.73 | |
| 2grj_A | 192 | Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp | 94.7 | |
| 3pqc_A | 195 | Probable GTP-binding protein ENGB; rossmann fold, | 94.66 | |
| 2fn4_A | 181 | P23, RAS-related protein R-RAS; GDP/GTP binding, G | 94.65 | |
| 1uj2_A | 252 | Uridine-cytidine kinase 2; alpha/beta mononucleoti | 94.65 | |
| 3tlx_A | 243 | Adenylate kinase 2; structural genomics, structura | 94.65 | |
| 1q57_A | 503 | DNA primase/helicase; dntpase, DNA replication, tr | 94.64 | |
| 1r2q_A | 170 | RAS-related protein RAB-5A; GTPase, GNP, atomic re | 94.6 | |
| 4dsu_A | 189 | GTPase KRAS, isoform 2B; small G-protein, signalin | 94.6 | |
| 2cxx_A | 190 | Probable GTP-binding protein ENGB; structural geno | 94.59 | |
| 2hxs_A | 178 | RAB-26, RAS-related protein RAB-28; GTPase, signal | 94.59 | |
| 3clv_A | 208 | RAB5 protein, putative; malaria, GTPase, structura | 94.55 | |
| 2oil_A | 193 | CATX-8, RAS-related protein RAB-25; G-protein, GDP | 94.54 | |
| 1upt_A | 171 | ARL1, ADP-ribosylation factor-like protein 1; hydr | 94.53 | |
| 2e87_A | 357 | Hypothetical protein PH1320; GTP-binding, GTPase, | 94.53 | |
| 3cmu_A | 2050 | Protein RECA, recombinase A; homologous recombinat | 94.5 | |
| 1r8s_A | 164 | ADP-ribosylation factor 1; protein transport/excha | 94.5 | |
| 3bc1_A | 195 | RAS-related protein RAB-27A; RAB27, GTPase, RAB, s | 94.5 | |
| 3t1o_A | 198 | Gliding protein MGLA; G domain containing protein, | 94.47 | |
| 3bos_A | 242 | Putative DNA replication factor; P-loop containing | 94.47 | |
| 1wf3_A | 301 | GTP-binding protein; GTPase, riken structural geno | 94.45 | |
| 1moz_A | 183 | ARL1, ADP-ribosylation factor-like protein 1; GTP- | 94.44 | |
| 2z43_A | 324 | DNA repair and recombination protein RADA; archaea | 94.43 | |
| 1a7j_A | 290 | Phosphoribulokinase; transferase, calvin cycle; 2. | 94.4 | |
| 2g6b_A | 180 | RAS-related protein RAB-26; G-protein, GTP analogu | 94.39 | |
| 2a9k_A | 187 | RAS-related protein RAL-A; bacterial ADP-ribosyltr | 94.36 | |
| 3b9p_A | 297 | CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc | 94.35 | |
| 2y8e_A | 179 | RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti | 94.34 | |
| 1z0f_A | 179 | RAB14, member RAS oncogene family; RAB GTPase, ves | 94.33 | |
| 3con_A | 190 | GTPase NRAS; structural genomics consortium, SGC, | 94.32 | |
| 2xb4_A | 223 | Adenylate kinase; ATP-binding, nucleotide-binding, | 94.32 | |
| 1fnn_A | 389 | CDC6P, cell division control protein 6; ORC1, AAA | 94.31 | |
| 3t5d_A | 274 | Septin-7; GTP-binding protein, cytoskeleton, signa | 94.31 | |
| 2efe_B | 181 | Small GTP-binding protein-like; GEF, GTPase, VPS9, | 94.28 | |
| 2f6r_A | 281 | COA synthase, bifunctional coenzyme A synthase; 18 | 94.27 | |
| 3iev_A | 308 | GTP-binding protein ERA; ERA, GTPase, KH domain, a | 94.27 | |
| 2dby_A | 368 | GTP-binding protein; GDP, structural genomics, NPP | 94.26 | |
| 3ihw_A | 184 | Centg3; RAS, centaurin, GTPase, structural genomic | 94.26 | |
| 3a8t_A | 339 | Adenylate isopentenyltransferase; rossmann fold pr | 94.25 | |
| 2qby_A | 386 | CDC6 homolog 1, cell division control protein 6 ho | 94.25 | |
| 3cbq_A | 195 | GTP-binding protein REM 2; FLJ38964A, structural g | 94.24 | |
| 2qmh_A | 205 | HPR kinase/phosphorylase; V267F mutation, ATP-bind | 94.23 | |
| 1nrj_B | 218 | SR-beta, signal recognition particle receptor beta | 94.2 | |
| 3iby_A | 256 | Ferrous iron transport protein B; G protein, G dom | 94.2 | |
| 2bov_A | 206 | RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, | 94.17 | |
| 1vg8_A | 207 | RAS-related protein RAB-7; GTP-binding protein, pr | 94.17 | |
| 4fcw_A | 311 | Chaperone protein CLPB; AAA domain; HET: ADP; 2.35 | 94.16 | |
| 1ksh_A | 186 | ARF-like protein 2; small GTPase, small GTP-bindin | 94.16 | |
| 2gf9_A | 189 | RAS-related protein RAB-3D; G-protein, structural | 94.14 | |
| 2bme_A | 186 | RAB4A, RAS-related protein RAB4A; GTP-binding prot | 94.12 | |
| 4edh_A | 213 | DTMP kinase, thymidylate kinase; structural genomi | 94.11 | |
| 1jbk_A | 195 | CLPB protein; beta barrel, chaperone; 1.80A {Esche | 94.09 | |
| 3tkl_A | 196 | RAS-related protein RAB-1A; vesicle trafficking, p | 94.08 | |
| 2xtp_A | 260 | GTPase IMAP family member 2; immune system, G prot | 94.05 | |
| 3be4_A | 217 | Adenylate kinase; malaria, cryptosporidium parvum | 94.05 | |
| 3kkq_A | 183 | RAS-related protein M-RAS; GTP-binding, GTPase, si | 94.04 | |
| 2gf0_A | 199 | GTP-binding protein DI-RAS1; GDP/GTP binding, GTP | 94.03 | |
| 1m7b_A | 184 | RND3/RHOE small GTP-binding protein; small GTPase, | 94.03 | |
| 1mh1_A | 186 | RAC1; GTP-binding, GTPase, small G-protein, RHO fa | 94.0 | |
| 1zbd_A | 203 | Rabphilin-3A; G protein, effector, RABCDR, synapti | 94.0 | |
| 2fg5_A | 192 | RAB-22B, RAS-related protein RAB-31; G-protein, GT | 94.0 | |
| 2cjw_A | 192 | GTP-binding protein GEM; nucleotide-binding, small | 93.98 | |
| 2w58_A | 202 | DNAI, primosome component (helicase loader); ATP-b | 93.98 | |
| 3a1s_A | 258 | Iron(II) transport protein B; FEOB, iron transport | 93.97 | |
| 2il1_A | 192 | RAB12; G-protein, GDP, GTPase, predicted, structur | 93.96 | |
| 3v9p_A | 227 | DTMP kinase, thymidylate kinase; ssgcid, STRU geno | 93.94 | |
| 1z06_A | 189 | RAS-related protein RAB-33B; RAB GTPase, RAB33B GT | 93.93 | |
| 1e4v_A | 214 | Adenylate kinase; transferase(phosphotransferase); | 93.9 | |
| 2a5j_A | 191 | RAS-related protein RAB-2B; GTPase, signal transdu | 93.85 | |
| 3d3q_A | 340 | TRNA delta(2)-isopentenylpyrophosphate transferase | 93.83 | |
| 3oes_A | 201 | GTPase rhebl1; small GTPase, structural genomics, | 93.83 | |
| 1ltq_A | 301 | Polynucleotide kinase; phosphatase, alpha/beta, P- | 93.83 | |
| 2wsm_A | 221 | Hydrogenase expression/formation protein (HYPB); m | 93.82 | |
| 3exa_A | 322 | TRNA delta(2)-isopentenylpyrophosphate transferase | 93.81 | |
| 3bwd_D | 182 | RAC-like GTP-binding protein ARAC6; G domain, cyto | 93.81 | |
| 3i8s_A | 274 | Ferrous iron transport protein B; GTPase, GPCR, ir | 93.81 | |
| 1ak2_A | 233 | Adenylate kinase isoenzyme-2; nucleoside monophosp | 93.79 | |
| 2o52_A | 200 | RAS-related protein RAB-4B; G-protein, GDP, struct | 93.79 | |
| 2qu8_A | 228 | Putative nucleolar GTP-binding protein 1; GTPase, | 93.78 | |
| 1zj6_A | 187 | ADP-ribosylation factor-like protein 5; ARL, GTP-b | 93.78 | |
| 1sky_E | 473 | F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alp | 93.78 | |
| 3bh0_A | 315 | DNAB-like replicative helicase; ATPase, replicatio | 93.76 | |
| 3lv8_A | 236 | DTMP kinase, thymidylate kinase; structural genomi | 93.76 | |
| 1zd9_A | 188 | ADP-ribosylation factor-like 10B; transport protei | 93.75 | |
| 3dz8_A | 191 | RAS-related protein RAB-3B; GDP, GTPase, structura | 93.75 | |
| 3t5g_A | 181 | GTP-binding protein RHEB; immunoglobulin-like beta | 93.75 | |
| 2h57_A | 190 | ADP-ribosylation factor-like protein 6; GTP, GTPas | 93.74 | |
| 4bas_A | 199 | ADP-ribosylation factor, putative (small GTPase, p | 93.74 | |
| 2atv_A | 196 | RERG, RAS-like estrogen-regulated growth inhibitor | 93.73 | |
| 3reg_A | 194 | RHO-like small GTPase; cytoskeleton, nucleotide-bi | 93.72 | |
| 4dhe_A | 223 | Probable GTP-binding protein ENGB; melioidosis, RA | 93.72 | |
| 1njg_A | 250 | DNA polymerase III subunit gamma; rossman-like fol | 93.7 | |
| 3zvl_A | 416 | Bifunctional polynucleotide phosphatase/kinase; hy | 93.69 | |
| 1x3s_A | 195 | RAS-related protein RAB-18; GTPase, GNP, structura | 93.68 | |
| 3umf_A | 217 | Adenylate kinase; rossmann fold, transferase; 2.05 | 93.68 | |
| 2ew1_A | 201 | RAS-related protein RAB-30; G-protein, GTP analogu | 93.68 | |
| 2bcg_Y | 206 | Protein YP2, GTP-binding protein YPT1; RABGTPase, | 93.67 | |
| 2p5s_A | 199 | RAS and EF-hand domain containing; G-protein, RAB, | 93.67 | |
| 2f7s_A | 217 | C25KG, RAS-related protein RAB-27B; G-protein, str | 93.66 | |
| 3cph_A | 213 | RAS-related protein SEC4; RAB GTPase, prenylation, | 93.65 | |
| 1jwy_B | 315 | Dynamin A GTPase domain; dynamin, GTPase, GDP, myo | 93.64 | |
| 2h17_A | 181 | ADP-ribosylation factor-like protein 5A; GDP, GTPa | 93.64 | |
| 3llu_A | 196 | RAS-related GTP-binding protein C; structural geno | 93.61 | |
| 3cmw_A | 1706 | Protein RECA, recombinase A; homologous recombinat | 93.57 | |
| 2i1q_A | 322 | DNA repair and recombination protein RADA; ATPase, | 93.54 | |
| 2q3h_A | 201 | RAS homolog gene family, member U; GTPase, structu | 93.54 | |
| 2iwr_A | 178 | Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi | 93.51 | |
| 4tmk_A | 213 | Protein (thymidylate kinase); ATP:DTMP phosphotran | 93.5 | |
| 2h92_A | 219 | Cytidylate kinase; rossmann fold, transferase; HET | 93.49 | |
| 3ld9_A | 223 | DTMP kinase, thymidylate kinase; ssgcid, NIH, niai | 93.49 | |
| 3c5c_A | 187 | RAS-like protein 12; GDP, GTPase, structural genom | 93.47 | |
| 2fv8_A | 207 | H6, RHO-related GTP-binding protein RHOB; GDP/GTP | 93.47 | |
| 2j1l_A | 214 | RHO-related GTP-binding protein RHOD; GTPase, memb | 93.43 | |
| 3h4m_A | 285 | Proteasome-activating nucleotidase; ATPase, PAN, A | 93.43 | |
| 3tmk_A | 216 | Thymidylate kinase; phosphotransferase; HET: T5A; | 93.41 | |
| 1gwn_A | 205 | RHO-related GTP-binding protein RHOE; GTPase, inac | 93.38 | |
| 2fh5_B | 214 | SR-beta, signal recognition particle receptor beta | 93.34 | |
| 2p65_A | 187 | Hypothetical protein PF08_0063; CLPB, malaria, str | 93.34 | |
| 2fu5_C | 183 | RAS-related protein RAB-8A; MSS4:RAB8 protein comp | 93.33 | |
| 2ocp_A | 241 | DGK, deoxyguanosine kinase; protein-nucleotide com | 93.33 | |
| 3crm_A | 323 | TRNA delta(2)-isopentenylpyrophosphate transferase | 93.32 | |
| 1l8q_A | 324 | Chromosomal replication initiator protein DNAA; AA | 93.26 | |
| 2aka_B | 299 | Dynamin-1; fusion protein, GTPase domain, myosin, | 93.24 | |
| 1p5z_B | 263 | DCK, deoxycytidine kinase; nucleoside kinase, P-lo | 93.24 | |
| 3def_A | 262 | T7I23.11 protein; chloroplast, TOC33, GTPase, hydr | 93.22 | |
| 2b6h_A | 192 | ADP-ribosylation factor 5; membrane trafficking, G | 93.21 | |
| 2zts_A | 251 | Putative uncharacterized protein PH0186; KAIC like | 93.2 | |
| 1ypw_A | 806 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 93.18 | |
| 2gco_A | 201 | H9, RHO-related GTP-binding protein RHOC; GTPase,s | 93.15 | |
| 2g3y_A | 211 | GTP-binding protein GEM; small GTPase, GDP, inacti | 93.15 | |
| 4djt_A | 218 | GTP-binding nuclear protein GSP1; structural genom | 93.13 | |
| 1h65_A | 270 | Chloroplast outer envelope protein OEP34; GTPase, | 93.05 | |
| 2atx_A | 194 | Small GTP binding protein TC10; GTPase, P-loop, al | 92.98 | |
| 3tqf_A | 181 | HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co | 92.92 | |
| 3foz_A | 316 | TRNA delta(2)-isopentenylpyrophosphate transferas; | 92.91 | |
| 3cnl_A | 262 | YLQF, putative uncharacterized protein; circular p | 92.77 | |
| 3sr0_A | 206 | Adenylate kinase; phosphoryl transfer analogue, AL | 92.77 | |
| 1sxj_D | 353 | Activator 1 41 kDa subunit; clamp loader, processi | 92.73 | |
| 2hf9_A | 226 | Probable hydrogenase nickel incorporation protein | 92.71 | |
| 3cpj_B | 223 | GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl | 92.7 | |
| 2hup_A | 201 | RAS-related protein RAB-43; G-protein, GDP, struct | 92.6 | |
| 2yc2_C | 208 | IFT27, small RAB-related GTPase; transport protein | 92.59 | |
| 4dcu_A | 456 | GTP-binding protein ENGA; GTPase, GDP, protein bin | 92.56 | |
| 2x77_A | 189 | ADP-ribosylation factor; GTP-binding protein, smal | 92.55 | |
| 2qz4_A | 262 | Paraplegin; AAA+, SPG7, protease, ADP, structural | 92.53 | |
| 2r62_A | 268 | Cell division protease FTSH homolog; ATPase domain | 92.41 | |
| 3q3j_B | 214 | RHO-related GTP-binding protein RHO6; RAS-binding | 92.39 | |
| 4gzl_A | 204 | RAS-related C3 botulinum toxin substrate 1; rossma | 92.39 | |
| 3eph_A | 409 | TRNA isopentenyltransferase; transferase, alternat | 92.35 | |
| 3cmu_A | 2050 | Protein RECA, recombinase A; homologous recombinat | 92.35 | |
| 2z4s_A | 440 | Chromosomal replication initiator protein DNAA; AA | 92.32 | |
| 2j0v_A | 212 | RAC-like GTP-binding protein ARAC7; nucleotide-bin | 92.15 | |
| 3n70_A | 145 | Transport activator; sigma-54, ntpase, PSI, MCSG, | 92.01 | |
| 2orw_A | 184 | Thymidine kinase; TMTK, TP4A, transferase; HET: 4T | 92.01 | |
| 2vhj_A | 331 | Ntpase P4, P4; non- hydrolysable ATP analogue, hyd | 91.64 | |
| 3dm5_A | 443 | SRP54, signal recognition 54 kDa protein; protein- | 91.55 | |
| 2chg_A | 226 | Replication factor C small subunit; DNA-binding pr | 91.52 | |
| 3gmt_A | 230 | Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle | 91.47 | |
| 4hlc_A | 205 | DTMP kinase, thymidylate kinase; TMK, MRSA, pipiri | 91.47 | |
| 1puj_A | 282 | YLQF, conserved hypothetical protein YLQF; structu | 91.27 | |
| 2v1u_A | 387 | Cell division control protein 6 homolog; DNA repli | 91.26 | |
| 3syl_A | 309 | Protein CBBX; photosynthesis, rubisco activase, AA | 91.04 | |
| 3r7w_A | 307 | Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT | 91.02 | |
| 3th5_A | 204 | RAS-related C3 botulinum toxin substrate 1; rossma | 90.38 | |
| 3gj0_A | 221 | GTP-binding nuclear protein RAN; G protein, GDP, a | 90.98 | |
| 1wxq_A | 397 | GTP-binding protein; structural genomics, riken st | 90.95 | |
| 3p32_A | 355 | Probable GTPase RV1496/MT1543; structural genomics | 90.92 | |
| 2x2e_A | 353 | Dynamin-1; nitration, hydrolase, membrane fission, | 90.85 | |
| 2hjg_A | 436 | GTP-binding protein ENGA; GTPase ENGA KH-domain, h | 90.84 | |
| 1d2n_A | 272 | N-ethylmaleimide-sensitive fusion protein; hexamer | 90.78 | |
| 3l0i_B | 199 | RAS-related protein RAB-1A; GEF-GDF-RAB complex, G | 90.73 | |
| 2qgz_A | 308 | Helicase loader, putative primosome component; str | 90.67 | |
| 1xwi_A | 322 | SKD1 protein; VPS4B, AAA ATPase, protein transport | 90.5 | |
| 3ec1_A | 369 | YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase | 90.46 | |
| 1lnz_A | 342 | SPO0B-associated GTP-binding protein; GTPase, OBG, | 90.37 | |
| 2v3c_C | 432 | SRP54, signal recognition 54 kDa protein; nucleoti | 90.29 | |
| 1x6v_B | 630 | Bifunctional 3'-phosphoadenosine 5'- phosphosulfat | 90.28 | |
| 3geh_A | 462 | MNME, tRNA modification GTPase MNME; G protein, U3 | 90.23 | |
| 2xau_A | 773 | PRE-mRNA-splicing factor ATP-dependent RNA helica; | 90.18 | |
| 3t15_A | 293 | Ribulose bisphosphate carboxylase/oxygenase activ | 90.17 | |
| 1g8f_A | 511 | Sulfate adenylyltransferase; alpha-beta protein, b | 90.14 | |
| 1ofh_A | 310 | ATP-dependent HSL protease ATP-binding subunit HSL | 90.04 | |
| 1m8p_A | 573 | Sulfate adenylyltransferase; rossmann fold, phosph | 90.03 | |
| 1f5n_A | 592 | Interferon-induced guanylate-binding protein 1; GB | 90.01 | |
| 3uk6_A | 368 | RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding | 89.98 | |
| 2qpt_A | 550 | EH domain-containing protein-2; protein-nucleotide | 89.95 | |
| 3hws_A | 363 | ATP-dependent CLP protease ATP-binding subunit CL; | 89.91 | |
| 3eie_A | 322 | Vacuolar protein sorting-associated protein 4; AAA | 89.89 | |
| 3d8b_A | 357 | Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s | 89.78 | |
| 3pvs_A | 447 | Replication-associated recombination protein A; ma | 89.78 | |
| 2qby_B | 384 | CDC6 homolog 3, cell division control protein 6 ho | 89.7 |
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-41 Score=355.96 Aligned_cols=204 Identities=22% Similarity=0.363 Sum_probs=179.3
Q ss_pred cceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEE
Q 006897 54 TCKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITV 133 (627)
Q Consensus 54 ~~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i 133 (627)
..+|+++||+++|+.+ .+...+|+||||+|++||++||+||||||||||+|+|+|+++|++ |+|.+
T Consensus 22 ~~mi~v~~ls~~y~~~-----------~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~---G~I~i 87 (366)
T 3tui_C 22 KHMIKLSNITKVFHQG-----------TRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTE---GSVLV 87 (366)
T ss_dssp -CCEEEEEEEEEEECS-----------SSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSE---EEEEE
T ss_pred CceEEEEeEEEEeCCC-----------CCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCc---eEEEE
Confidence 3479999999999532 123569999999999999999999999999999999999999964 99999
Q ss_pred CCccCCC--h---hhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccCC----cC
Q 006897 134 NCHQIKK--P---AQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAGS----FV 204 (627)
Q Consensus 134 ~g~~~~~--~---~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~----~~ 204 (627)
+|+++.. . ...|+.||||||++.+++.+||+||+.++...+ +.++++.+++++++|+.+||.+.+++ ++
T Consensus 88 ~G~~i~~~~~~~~~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~--~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LS 165 (366)
T 3tui_C 88 DGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELD--NTPKDEVKRRVTELLSLVGLGDKHDSYPSNLS 165 (366)
T ss_dssp TTEECSSCCHHHHHHHHTTEEEECSSCCCCTTSCHHHHHHHHHHHS--CCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSC
T ss_pred CCEECCcCCHHHHHHHhCcEEEEeCCCccCCCCCHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCchHhcCChhhCC
Confidence 9999743 2 235788999999999999999999999987543 44677888899999999999877654 55
Q ss_pred CccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEe
Q 006897 205 GDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVH 266 (627)
Q Consensus 205 gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~ 266 (627)
|||||| ||+|||+.++.+++++|++++++.|+|||++|||++ ++.++|||+++|++|++++
T Consensus 166 GGqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~-~~~~~aDrv~vl~~G~iv~ 244 (366)
T 3tui_C 166 GGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMD-VVKRICDCVAVISNGELIE 244 (366)
T ss_dssp HHHHHHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHH-HHHHHCSEEEEEETTEEEE
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEECCEEEE
Confidence 999999 999999999999999999998877999999999998 5889999999999999999
Q ss_pred eCCHHHHH
Q 006897 267 YGSLELLE 274 (627)
Q Consensus 267 ~G~~~~~~ 274 (627)
.|+++++.
T Consensus 245 ~g~~~ev~ 252 (366)
T 3tui_C 245 QDTVSEVF 252 (366)
T ss_dssp CCBHHHHH
T ss_pred EcCHHHHH
Confidence 99998874
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-40 Score=354.36 Aligned_cols=199 Identities=25% Similarity=0.403 Sum_probs=178.7
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
+|+++||+++|+ ++.+|+||||++++||+++|+||||||||||||+|+|+++|++ |+|.++|
T Consensus 3 ~l~~~~l~~~yg---------------~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~---G~I~i~G 64 (381)
T 3rlf_A 3 SVQLQNVTKAWG---------------EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITS---GDLFIGE 64 (381)
T ss_dssp CEEEEEEEEEET---------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSE---EEEEETT
T ss_pred EEEEEeEEEEEC---------------CEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCC---eEEEECC
Confidence 589999999993 3569999999999999999999999999999999999999864 9999999
Q ss_pred ccCCChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccCC----cCCccccC-
Q 006897 136 HQIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAGS----FVGDEENR- 210 (627)
Q Consensus 136 ~~~~~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~----~~gGe~qr- 210 (627)
+++......++.||||||++.++|.+||+||+.|+.+.+ +.++++.+++++++++.+||++..++ ++||||||
T Consensus 65 ~~~~~~~~~~r~ig~VfQ~~~l~p~ltV~eni~~~~~~~--~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRV 142 (381)
T 3rlf_A 65 KRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLA--GAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRV 142 (381)
T ss_dssp EECTTCCGGGSCEEEECTTCCCCTTSCHHHHHTHHHHHT--TCCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHH
T ss_pred EECCCCCHHHCCEEEEecCCcCCCCCCHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHcCCchhhcCChhHCCHHHHHHH
Confidence 997543344578999999999999999999999987653 45677888999999999999887665 45999999
Q ss_pred -----------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeCCHHHH
Q 006897 211 -----------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGSLELL 273 (627)
Q Consensus 211 -----------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~ 273 (627)
||++||+..+.++.+.|+++.++.|+|+|++|||++ ++..+||||++|++|+++..|+++++
T Consensus 143 aiArAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~-ea~~~aDri~vl~~G~i~~~g~~~~l 221 (381)
T 3rlf_A 143 AIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV-EAMTLADKIVVLDAGRVAQVGKPLEL 221 (381)
T ss_dssp HHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHH-HHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred HHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHH-HHHHhCCEEEEEECCEEEEEeCHHHH
Confidence 999999999999999999998777999999999998 58999999999999999999999987
Q ss_pred HH
Q 006897 274 EE 275 (627)
Q Consensus 274 ~~ 275 (627)
.+
T Consensus 222 ~~ 223 (381)
T 3rlf_A 222 YH 223 (381)
T ss_dssp HH
T ss_pred Hh
Confidence 53
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-41 Score=353.54 Aligned_cols=199 Identities=24% Similarity=0.417 Sum_probs=176.1
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
+|+++||+++|+ ++.+|+||||+|++||+++|+||||||||||||+|+|+++|++ |+|.++|
T Consensus 4 ~l~i~~ls~~y~---------------~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~---G~I~i~G 65 (359)
T 3fvq_A 4 ALHIGHLSKSFQ---------------NTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDS---GEISLSG 65 (359)
T ss_dssp CEEEEEEEEEET---------------TEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSE---EEEEETT
T ss_pred EEEEEeEEEEEC---------------CEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCC---cEEEECC
Confidence 699999999993 3569999999999999999999999999999999999999964 9999999
Q ss_pred ccC----CChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccCC----cCCcc
Q 006897 136 HQI----KKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAGS----FVGDE 207 (627)
Q Consensus 136 ~~~----~~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~----~~gGe 207 (627)
+++ ......++.+|||||+..+||.+||+||+.|+... .+.++++.+++++++++.+||++..++ ++|||
T Consensus 66 ~~i~~~~~~~~~~~r~ig~vfQ~~~l~p~ltV~eni~~~l~~--~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq 143 (359)
T 3fvq_A 66 KTIFSKNTNLPVRERRLGYLVQEGVLFPHLTVYRNIAYGLGN--GKGRTAQERQRIEAMLELTGISELAGRYPHELSGGQ 143 (359)
T ss_dssp EEEESSSCBCCGGGSCCEEECTTCCCCTTSCHHHHHHTTSTT--SSCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHH
T ss_pred EECcccccccchhhCCEEEEeCCCcCCCCCCHHHHHHHHHHH--cCCChHHHHHHHHHHHHHcCCchHhcCChhhCCHHH
Confidence 986 22234567899999999999999999999997533 234566778899999999999887765 45999
Q ss_pred ccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeCC
Q 006897 208 ENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGS 269 (627)
Q Consensus 208 ~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~ 269 (627)
||| ||+|||+..+.++++.|+++.++.|+|+|++|||++ ++..+||||++|++|+++..|+
T Consensus 144 ~QRValArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~-ea~~~aDri~vl~~G~i~~~g~ 222 (359)
T 3fvq_A 144 QQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDRE-EALQYADRIAVMKQGRILQTAS 222 (359)
T ss_dssp HHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHH-HHHHHCSEEEEEETTEEEEEEC
T ss_pred HHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHHCCEEEEEECCEEEEEeC
Confidence 999 999999999999999998887778999999999998 5899999999999999999999
Q ss_pred HHHHHH
Q 006897 270 LELLEE 275 (627)
Q Consensus 270 ~~~~~~ 275 (627)
++++.+
T Consensus 223 ~~el~~ 228 (359)
T 3fvq_A 223 PHELYR 228 (359)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 998753
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-40 Score=336.87 Aligned_cols=201 Identities=23% Similarity=0.388 Sum_probs=173.2
Q ss_pred ceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEEC
Q 006897 55 CKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVN 134 (627)
Q Consensus 55 ~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~ 134 (627)
.+|+++||+++|+. .+.+|+||||+|++||++||+||||||||||+|+|+|+++|++ |+|.++
T Consensus 6 ~~l~i~~ls~~y~~--------------~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~---G~I~~~ 68 (275)
T 3gfo_A 6 YILKVEELNYNYSD--------------GTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSS---GRILFD 68 (275)
T ss_dssp EEEEEEEEEEECTT--------------SCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSE---EEEEET
T ss_pred cEEEEEEEEEEECC--------------CCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCC---eEEEEC
Confidence 37999999999942 2359999999999999999999999999999999999999863 999999
Q ss_pred CccCC-C---hhhhcccEEEEccCC-CCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccCC----cCC
Q 006897 135 CHQIK-K---PAQLRKICGFVAQED-NLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAGS----FVG 205 (627)
Q Consensus 135 g~~~~-~---~~~~r~~ig~v~Q~~-~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~----~~g 205 (627)
|+++. . ...+++.+|||||++ ..+..+||+||+.++... .+.++++.+++++++++.+||++..++ ++|
T Consensus 69 G~~i~~~~~~~~~~~~~ig~v~Q~~~~~~~~~tv~e~l~~~~~~--~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSg 146 (275)
T 3gfo_A 69 NKPIDYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVN--MKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSF 146 (275)
T ss_dssp TEECCCSHHHHHHHHHSEEEECSSGGGTCCSSBHHHHHHHHHHT--SCCCHHHHHHHHHHHHHHTTCGGGTTSBGGGSCH
T ss_pred CEECCcccccHHHHhCcEEEEEcCcccccccCcHHHHHHHHHHH--cCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCH
Confidence 99863 1 234678899999986 233468999999998753 344677778899999999999877664 559
Q ss_pred ccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEee
Q 006897 206 DEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHY 267 (627)
Q Consensus 206 Ge~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~ 267 (627)
||||| ||+|||+.++..++++|++++++.|+|||++|||++. +.++|||+++|++|++++.
T Consensus 147 GqkQRv~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~-~~~~~drv~~l~~G~i~~~ 225 (275)
T 3gfo_A 147 GQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDI-VPLYCDNVFVMKEGRVILQ 225 (275)
T ss_dssp HHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSS-GGGGCSEEEEEETTEEEEE
T ss_pred HHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHH-HHHhCCEEEEEECCEEEEE
Confidence 99999 9999999999999999999973349999999999994 7889999999999999999
Q ss_pred CCHHHHHH
Q 006897 268 GSLELLEE 275 (627)
Q Consensus 268 G~~~~~~~ 275 (627)
|+++++.+
T Consensus 226 g~~~~~~~ 233 (275)
T 3gfo_A 226 GNPKEVFA 233 (275)
T ss_dssp ECHHHHTH
T ss_pred CCHHHHhc
Confidence 99988743
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-39 Score=330.51 Aligned_cols=198 Identities=25% Similarity=0.412 Sum_probs=172.5
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
+|+++||+++|+ ++++|+||||++++||+++|+||||||||||+|+|+|+++|++ |+|.++|
T Consensus 24 ~l~i~~l~~~y~---------------~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~---G~I~~~g 85 (263)
T 2olj_A 24 MIDVHQLKKSFG---------------SLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDE---GEIIIDG 85 (263)
T ss_dssp SEEEEEEEEEET---------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSE---EEEEETT
T ss_pred eEEEEeEEEEEC---------------CEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCC---cEEEECC
Confidence 699999999993 3469999999999999999999999999999999999999863 9999999
Q ss_pred ccCC----ChhhhcccEEEEccCCCCCCCCCHHHHHHHHH-HhcCCCCCHHHHHHHHHHHHHHcCCccccCC----cCCc
Q 006897 136 HQIK----KPAQLRKICGFVAQEDNLLPLLTVKETLMFSA-NFRLKGMSHKEKEDRVESLMDELGLTHVAGS----FVGD 206 (627)
Q Consensus 136 ~~~~----~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~-~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~----~~gG 206 (627)
+++. ....+++.+|||||++.+++.+||+||+.++. .. .+.++++.+++++++++.+||.+..++ ++||
T Consensus 86 ~~i~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~l~~~~~~~--~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG 163 (263)
T 2olj_A 86 INLKAKDTNLNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKV--RKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGG 163 (263)
T ss_dssp EESSSTTCCHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHT--SCCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHH
T ss_pred EECCCccccHHHHhCcEEEEeCCCcCCCCCCHHHHHHHHHHHH--cCCCHHHHHHHHHHHHHHCCCchHhcCChhhCCHH
Confidence 8863 12345678999999999999999999999964 22 233455667789999999999876654 5699
Q ss_pred cccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeC
Q 006897 207 EENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYG 268 (627)
Q Consensus 207 e~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G 268 (627)
|||| ||+|||+.++.++++.|++++++ |+|||++|||++ ++.++||++++|++|++++.|
T Consensus 164 qkQRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~-g~tvi~vtHd~~-~~~~~~d~v~~l~~G~i~~~g 241 (263)
T 2olj_A 164 QAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANE-GMTMVVVTHEMG-FAREVGDRVLFMDGGYIIEEG 241 (263)
T ss_dssp HHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHT-TCEEEEECSCHH-HHHHHCSEEEEEETTEEEEEE
T ss_pred HHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhC-CCEEEEEcCCHH-HHHHhCCEEEEEECCEEEEEC
Confidence 9999 99999999999999999999765 999999999998 488899999999999999999
Q ss_pred CHHHHHH
Q 006897 269 SLELLEE 275 (627)
Q Consensus 269 ~~~~~~~ 275 (627)
+++++.+
T Consensus 242 ~~~~~~~ 248 (263)
T 2olj_A 242 KPEDLFD 248 (263)
T ss_dssp CHHHHHH
T ss_pred CHHHHHh
Confidence 9987743
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-39 Score=343.95 Aligned_cols=203 Identities=21% Similarity=0.382 Sum_probs=178.4
Q ss_pred CcceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEE
Q 006897 53 TTCKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSIT 132 (627)
Q Consensus 53 ~~~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~ 132 (627)
+..+|+++||+++|+ +++.+|+||||++++||+++|+||||||||||||+|+|+++|++ |+|.
T Consensus 11 ~~~~l~~~~l~~~y~--------------g~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~---G~I~ 73 (355)
T 1z47_A 11 GSMTIEFVGVEKIYP--------------GGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTK---GDVW 73 (355)
T ss_dssp CCEEEEEEEEEECCT--------------TSTTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSE---EEEE
T ss_pred CCceEEEEEEEEEEc--------------CCCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCc---cEEE
Confidence 345899999999992 12358999999999999999999999999999999999999864 9999
Q ss_pred ECCccCCChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccCC----cCCccc
Q 006897 133 VNCHQIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAGS----FVGDEE 208 (627)
Q Consensus 133 i~g~~~~~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~----~~gGe~ 208 (627)
++|+++......++.+|||||+..++|.+||+||+.|+...+ +.++++.+++++++++.+||++..++ ++||||
T Consensus 74 i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~l~~~--~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~ 151 (355)
T 1z47_A 74 IGGKRVTDLPPQKRNVGLVFQNYALFQHMTVYDNVSFGLREK--RVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQ 151 (355)
T ss_dssp ETTEECTTCCGGGSSEEEECGGGCCCTTSCHHHHHHHHHHHT--TCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHH
T ss_pred ECCEECCcCChhhCcEEEEecCcccCCCCCHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHcCChhHhcCCcccCCHHHH
Confidence 999986443345678999999999999999999999987543 34566778899999999999877664 569999
Q ss_pred cC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeCCH
Q 006897 209 NR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGSL 270 (627)
Q Consensus 209 qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~ 270 (627)
|| ||+|||+..+.++.+.|+++.++.|+|+|++|||++ ++..+|||+++|++|+++..|++
T Consensus 152 QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~vl~~G~i~~~g~~ 230 (355)
T 1z47_A 152 QRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQE-EALEVADRVLVLHEGNVEQFGTP 230 (355)
T ss_dssp HHHHHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHH-HHHHHCSEEEEEETTEEEEEECH
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHH-HHHHhCCEEEEEECCEEEEEcCH
Confidence 99 999999999999999999998766899999999998 58899999999999999999999
Q ss_pred HHHHH
Q 006897 271 ELLEE 275 (627)
Q Consensus 271 ~~~~~ 275 (627)
+++.+
T Consensus 231 ~~l~~ 235 (355)
T 1z47_A 231 EEVYE 235 (355)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 88753
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-39 Score=344.53 Aligned_cols=199 Identities=22% Similarity=0.387 Sum_probs=176.0
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
+|+++||+++|+ ++.+|+|+||++++||+++|+||||||||||||+|+|+++|++ |+|.++|
T Consensus 3 ~l~~~~l~~~y~---------------~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~---G~I~i~g 64 (362)
T 2it1_A 3 EIKLENIVKKFG---------------NFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTS---GKIYFDE 64 (362)
T ss_dssp CEEEEEEEEESS---------------SSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSE---EEEEETT
T ss_pred EEEEEeEEEEEC---------------CEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCc---eEEEECC
Confidence 589999999993 3469999999999999999999999999999999999999864 9999999
Q ss_pred ccCCChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccCC----cCCccccC-
Q 006897 136 HQIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAGS----FVGDEENR- 210 (627)
Q Consensus 136 ~~~~~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~----~~gGe~qr- 210 (627)
+++.+....++.+|||||+..+||.+||+||+.|+...+ +.++++.+++++++++.+||++..++ ++||||||
T Consensus 65 ~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~--~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRv 142 (362)
T 2it1_A 65 KDVTELPPKDRNVGLVFQNWALYPHMTVYKNIAFPLELR--KAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRV 142 (362)
T ss_dssp EECTTSCGGGTTEEEECTTCCCCTTSCHHHHHHHHHHHT--TCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHH
T ss_pred EECCcCCHhHCcEEEEecCcccCCCCCHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCchHhhCChhhCCHHHHHHH
Confidence 987443334578999999999999999999999986543 34566777899999999999877654 56999999
Q ss_pred -----------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeCCHHHH
Q 006897 211 -----------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGSLELL 273 (627)
Q Consensus 211 -----------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~ 273 (627)
||+|||+..+.++.+.|+++.++.|+|+|++|||++ ++.++|||+++|++|+++..|+++++
T Consensus 143 alArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~vl~~G~i~~~g~~~~~ 221 (362)
T 2it1_A 143 AIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQA-EALAMADRIAVIREGEILQVGTPDEV 221 (362)
T ss_dssp HHHHHHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred HHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 999999999999999999998766899999999998 58899999999999999999999887
Q ss_pred HH
Q 006897 274 EE 275 (627)
Q Consensus 274 ~~ 275 (627)
.+
T Consensus 222 ~~ 223 (362)
T 2it1_A 222 YY 223 (362)
T ss_dssp HH
T ss_pred Hh
Confidence 53
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-39 Score=344.85 Aligned_cols=199 Identities=24% Similarity=0.390 Sum_probs=174.6
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
+|+++||+++|+ ++.+|+|+||++++||+++|+||||||||||||+|+|+++|++ |+|.++|
T Consensus 3 ~l~~~~l~~~y~---------------~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~---G~I~i~g 64 (359)
T 2yyz_A 3 SIRVVNLKKYFG---------------KVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTS---GEIYFDD 64 (359)
T ss_dssp CEEEEEEEEEET---------------TEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSE---EEEEETT
T ss_pred EEEEEEEEEEEC---------------CEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCc---cEEEECC
Confidence 589999999993 3469999999999999999999999999999999999999864 9999999
Q ss_pred ccCCChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccCC----cCCccccC-
Q 006897 136 HQIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAGS----FVGDEENR- 210 (627)
Q Consensus 136 ~~~~~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~----~~gGe~qr- 210 (627)
+++......++.+|||||+..+||.+||+||+.|+.+. .+.++++.+++++++++.+||++..++ ++||||||
T Consensus 65 ~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~--~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRv 142 (359)
T 2yyz_A 65 VLVNDIPPKYREVGMVFQNYALYPHMTVFENIAFPLRA--RRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRV 142 (359)
T ss_dssp EECTTSCGGGTTEEEECSSCCCCTTSCHHHHHHGGGSS--SCSHHHHTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHH
T ss_pred EECCCCChhhCcEEEEecCcccCCCCCHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHH
Confidence 98744333467899999999999999999999997532 233445556789999999999877664 56999999
Q ss_pred -----------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeCCHHHH
Q 006897 211 -----------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGSLELL 273 (627)
Q Consensus 211 -----------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~ 273 (627)
||++||+..+.++.+.|+++.++.|+|+|++|||++ ++..+|||+++|++|+++..|+++++
T Consensus 143 alArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~~~~~adri~vl~~G~i~~~g~~~~l 221 (359)
T 2yyz_A 143 ALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQA-EAMTMASRIAVFNQGKLVQYGTPDEV 221 (359)
T ss_dssp HHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHH-HHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred HHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999998766899999999998 58899999999999999999999987
Q ss_pred HH
Q 006897 274 EE 275 (627)
Q Consensus 274 ~~ 275 (627)
.+
T Consensus 222 ~~ 223 (359)
T 2yyz_A 222 YD 223 (359)
T ss_dssp HH
T ss_pred Hh
Confidence 53
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-39 Score=326.76 Aligned_cols=203 Identities=24% Similarity=0.420 Sum_probs=169.8
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
+|+++||+++|+.+. ..+.+|+||||++++||++||+||||||||||+|+|+|+++|++ |+|.++|
T Consensus 1 ~l~~~~l~~~y~~~~-----------~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~---G~I~~~g 66 (235)
T 3tif_A 1 MVKLKNVTKTYKMGE-----------EIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTE---GEVYIDN 66 (235)
T ss_dssp CEEEEEEEEEEEETT-----------EEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSE---EEEEETT
T ss_pred CEEEEEEEEEeCCCC-----------cceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCc---eEEEECC
Confidence 489999999995321 13469999999999999999999999999999999999999864 9999999
Q ss_pred ccCCC--hhh---h-cccEEEEccCCCCCCCCCHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHHHcCCccc-----cCCc
Q 006897 136 HQIKK--PAQ---L-RKICGFVAQEDNLLPLLTVKETLMFSANFRLK-GMSHKEKEDRVESLMDELGLTHV-----AGSF 203 (627)
Q Consensus 136 ~~~~~--~~~---~-r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~-~~~~~~~~~~v~~~l~~lgL~~~-----~~~~ 203 (627)
+++.. ..+ . ++.+|||||++.+++.+||+||+.++...+.. ..++++..+++.++++.+||.+. ..++
T Consensus 67 ~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~L 146 (235)
T 3tif_A 67 IKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQL 146 (235)
T ss_dssp EECTTCCHHHHHHHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGS
T ss_pred EEcccCCHHHHHHHhhccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhC
Confidence 98643 222 2 34699999999999999999999998654321 33566777889999999999764 2456
Q ss_pred CCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEE
Q 006897 204 VGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVV 265 (627)
Q Consensus 204 ~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv 265 (627)
+|||+|| ||+|||+.++.++++.|++++++.|+|||++|||++ +.++|||+++|++|+++
T Consensus 147 SgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~--~~~~~d~i~~l~~G~i~ 224 (235)
T 3tif_A 147 SGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDIN--VARFGERIIYLKDGEVE 224 (235)
T ss_dssp CHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHH--HHTTSSEEEEEETTEEE
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHH--HHHhCCEEEEEECCEEE
Confidence 6999999 999999999999999999998766899999999997 35899999999999999
Q ss_pred eeCCHHHHH
Q 006897 266 HYGSLELLE 274 (627)
Q Consensus 266 ~~G~~~~~~ 274 (627)
+.++++++.
T Consensus 225 ~~~~~~~~~ 233 (235)
T 3tif_A 225 REEKLRGFD 233 (235)
T ss_dssp EEEECC---
T ss_pred EEcChhhhc
Confidence 998876643
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-39 Score=329.81 Aligned_cols=197 Identities=26% Similarity=0.394 Sum_probs=171.9
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
+|+++||+++|+ ++++|+||||++++||++||+||||||||||+|+|+|+++|++ |+|.++|
T Consensus 6 ~l~i~~l~~~y~---------------~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~---G~i~~~g 67 (262)
T 1b0u_A 6 KLHVIDLHKRYG---------------GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSE---GAIIVNG 67 (262)
T ss_dssp CEEEEEEEEEET---------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSE---EEEEETT
T ss_pred eEEEeeEEEEEC---------------CEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCC---cEEEECC
Confidence 699999999993 3469999999999999999999999999999999999999863 9999999
Q ss_pred ccCCC------------h---hhhcccEEEEccCCCCCCCCCHHHHHHHHH-HhcCCCCCHHHHHHHHHHHHHHcCCccc
Q 006897 136 HQIKK------------P---AQLRKICGFVAQEDNLLPLLTVKETLMFSA-NFRLKGMSHKEKEDRVESLMDELGLTHV 199 (627)
Q Consensus 136 ~~~~~------------~---~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~-~~~~~~~~~~~~~~~v~~~l~~lgL~~~ 199 (627)
+++.. . ..+++.+|||||++.+++.+||+||+.++. .. .+.++++.+++++++++.+||.+.
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~--~~~~~~~~~~~~~~~l~~~~L~~~ 145 (262)
T 1b0u_A 68 QNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQV--LGLSKHDARERALKYLAKVGIDER 145 (262)
T ss_dssp EECCEEECTTSSEEESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHT--TCCCHHHHHHHHHHHHHHTTCCHH
T ss_pred EEccccccccccccccChhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHh--cCCCHHHHHHHHHHHHHHcCCCch
Confidence 88631 1 235678999999999999999999999964 32 233455667889999999999877
Q ss_pred -cCC----cCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhh
Q 006897 200 -AGS----FVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKF 256 (627)
Q Consensus 200 -~~~----~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i 256 (627)
.++ ++|||+|| ||+|||+.++..++++|++++++ |+|||++|||++ ++.++|||+
T Consensus 146 ~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~-g~tvi~vtHd~~-~~~~~~d~v 223 (262)
T 1b0u_A 146 AQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEE-GKTMVVVTHEMG-FARHVSSHV 223 (262)
T ss_dssp HHTSCGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHT-TCCEEEECSCHH-HHHHHCSEE
T ss_pred hhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCHH-HHHHhCCEE
Confidence 654 56999999 99999999999999999999765 999999999998 488899999
Q ss_pred eeecCCeEEeeCCHHHHH
Q 006897 257 LILSRGSVVHYGSLELLE 274 (627)
Q Consensus 257 ~vL~~G~iv~~G~~~~~~ 274 (627)
++|++|++++.|+++++.
T Consensus 224 ~~l~~G~i~~~g~~~~~~ 241 (262)
T 1b0u_A 224 IFLHQGKIEEEGDPEQVF 241 (262)
T ss_dssp EEEETTEEEEEECHHHHH
T ss_pred EEEECCEEEEeCCHHHHH
Confidence 999999999999998774
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-39 Score=344.39 Aligned_cols=199 Identities=22% Similarity=0.375 Sum_probs=175.7
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
+|+++||+++|+ ++.+|+|+||++++||+++|+||||||||||||+|+|+++|++ |+|.++|
T Consensus 3 ~l~~~~l~~~y~---------------~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~---G~I~i~g 64 (372)
T 1g29_1 3 GVRLVDVWKVFG---------------EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSR---GQIYIGD 64 (372)
T ss_dssp EEEEEEEEEEET---------------TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSE---EEEEETT
T ss_pred EEEEEeEEEEEC---------------CEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCc---cEEEECC
Confidence 589999999993 3469999999999999999999999999999999999999864 9999999
Q ss_pred ccCCC------hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccCC----cCC
Q 006897 136 HQIKK------PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAGS----FVG 205 (627)
Q Consensus 136 ~~~~~------~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~----~~g 205 (627)
+++.+ ....++.+|||||+..+||.+||+||+.|+...+ +.++++.+++++++++.+||++..++ ++|
T Consensus 65 ~~~~~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~--~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSG 142 (372)
T 1g29_1 65 KLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLR--KVPRQEIDQRVREVAELLGLTELLNRKPRELSG 142 (372)
T ss_dssp EEEEEGGGTEECCGGGSSEEEECSCCCCCTTSCHHHHHHHHHHHT--TCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCH
T ss_pred EECccccccccCCHhHCCEEEEeCCCccCCCCCHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHCCCchHhcCCcccCCH
Confidence 88632 2234578999999999999999999999987543 34566777899999999999877664 569
Q ss_pred ccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEee
Q 006897 206 DEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHY 267 (627)
Q Consensus 206 Ge~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~ 267 (627)
||||| ||++||+..+.++.+.|+++.++.|+|+|++|||++ ++..+|||+++|++|+++..
T Consensus 143 Gq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~vl~~G~i~~~ 221 (372)
T 1g29_1 143 GQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQV-EAMTMGDRIAVMNRGVLQQV 221 (372)
T ss_dssp HHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEETTEEEEE
T ss_pred HHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHH-HHHHhCCEEEEEeCCEEEEe
Confidence 99999 999999999999999999998766899999999998 58899999999999999999
Q ss_pred CCHHHHHH
Q 006897 268 GSLELLEE 275 (627)
Q Consensus 268 G~~~~~~~ 275 (627)
|+++++.+
T Consensus 222 g~~~~l~~ 229 (372)
T 1g29_1 222 GSPDEVYD 229 (372)
T ss_dssp ECHHHHHH
T ss_pred CCHHHHHh
Confidence 99988753
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-39 Score=343.95 Aligned_cols=199 Identities=20% Similarity=0.339 Sum_probs=169.2
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
+|+++||+++|+ ++.+|+|+||++++||+++|+||||||||||||+|+|+++|++ |+|.++|
T Consensus 11 ~l~~~~l~~~y~---------------~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~---G~I~i~g 72 (372)
T 1v43_A 11 EVKLENLTKRFG---------------NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTE---GRIYFGD 72 (372)
T ss_dssp CEEEEEEEEEET---------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSE---EEEEETT
T ss_pred eEEEEEEEEEEC---------------CEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCc---eEEEECC
Confidence 599999999993 3469999999999999999999999999999999999999864 9999999
Q ss_pred ccCCChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccCC----cCCccccC-
Q 006897 136 HQIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAGS----FVGDEENR- 210 (627)
Q Consensus 136 ~~~~~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~----~~gGe~qr- 210 (627)
+++......++.+|||||+..+||.+||+||+.|+... .+.++++.+++++++++.+||++..++ ++||||||
T Consensus 73 ~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~--~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRv 150 (372)
T 1v43_A 73 RDVTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKI--KKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRV 150 (372)
T ss_dssp EECTTSCGGGGTEEEEEC------CCCHHHHHHTTCC----CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHH
T ss_pred EECCCCChhhCcEEEEecCcccCCCCCHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHH
Confidence 98643333457899999999999999999999997432 234566777899999999999877654 56999999
Q ss_pred -----------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeCCHHHH
Q 006897 211 -----------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGSLELL 273 (627)
Q Consensus 211 -----------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~ 273 (627)
||++||+..+.++.+.|+++.++.|+|+|++|||++ ++.++|||+++|++|+++..|+++++
T Consensus 151 alArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~vl~~G~i~~~g~~~~l 229 (372)
T 1v43_A 151 AVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQV-EAMTMGDRIAVMNRGQLLQIGSPTEV 229 (372)
T ss_dssp HHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred HHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999998766899999999998 58899999999999999999999987
Q ss_pred HH
Q 006897 274 EE 275 (627)
Q Consensus 274 ~~ 275 (627)
.+
T Consensus 230 ~~ 231 (372)
T 1v43_A 230 YL 231 (372)
T ss_dssp HH
T ss_pred Hh
Confidence 53
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-39 Score=343.96 Aligned_cols=198 Identities=25% Similarity=0.370 Sum_probs=175.0
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccc--eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEE
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLH--ILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITV 133 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~--iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i 133 (627)
+|+++||+++|+ ++. +|+|+||++++||+++|+||||||||||||+|+|+++|++ |+|.+
T Consensus 3 ~l~i~~l~~~y~---------------~~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~---G~I~i 64 (353)
T 1oxx_K 3 RIIVKNVSKVFK---------------KGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPST---GELYF 64 (353)
T ss_dssp CEEEEEEEEEEG---------------GGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSE---EEEEE
T ss_pred EEEEEeEEEEEC---------------CEeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCc---eEEEE
Confidence 589999999993 345 9999999999999999999999999999999999999864 99999
Q ss_pred CCccCCC-----hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccCC----cC
Q 006897 134 NCHQIKK-----PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAGS----FV 204 (627)
Q Consensus 134 ~g~~~~~-----~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~----~~ 204 (627)
+|+++.. ....++.+|||||+..+++.+||+||+.|+... .+.++++.+++++++++.+||++..++ ++
T Consensus 65 ~g~~i~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~--~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LS 142 (353)
T 1oxx_K 65 DDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTN--MKMSKEEIRKRVEEVAKILDIHHVLNHFPRELS 142 (353)
T ss_dssp TTEEEEETTEESSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTT--SSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSC
T ss_pred CCEECcccccccCChhhCCEEEEeCCCccCCCCCHHHHHHHHHHH--cCCCHHHHHHHHHHHHHHcCCchHhcCChhhCC
Confidence 9988632 233567899999999999999999999997533 234566777899999999999877664 56
Q ss_pred CccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEe
Q 006897 205 GDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVH 266 (627)
Q Consensus 205 gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~ 266 (627)
|||||| ||+|||+..+.++.+.|+++.++.|+|+|++|||++ ++.++|||+++|++|+++.
T Consensus 143 GGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~~~~~adri~vl~~G~i~~ 221 (353)
T 1oxx_K 143 GAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPA-DIFAIADRVGVLVKGKLVQ 221 (353)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHH-HHHHHCSEEEEEETTEEEE
T ss_pred HHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEE
Confidence 999999 999999999999999999998766899999999998 5889999999999999999
Q ss_pred eCCHHHHH
Q 006897 267 YGSLELLE 274 (627)
Q Consensus 267 ~G~~~~~~ 274 (627)
.|+++++.
T Consensus 222 ~g~~~~l~ 229 (353)
T 1oxx_K 222 VGKPEDLY 229 (353)
T ss_dssp EECHHHHH
T ss_pred EcCHHHHH
Confidence 99998875
|
| >4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-39 Score=327.95 Aligned_cols=197 Identities=21% Similarity=0.373 Sum_probs=172.0
Q ss_pred ceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEEC
Q 006897 55 CKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVN 134 (627)
Q Consensus 55 ~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~ 134 (627)
.+|+++||++.|+ ++++|+||||++++||++||+||||||||||+|+|+|+++|++ |+|.++
T Consensus 10 ~~l~~~~l~~~~~---------------~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~---G~I~~~ 71 (266)
T 4g1u_C 10 ALLEASHLHYHVQ---------------QQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSH---GECHLL 71 (266)
T ss_dssp CEEEEEEEEEEET---------------TEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSS---CEEEET
T ss_pred ceEEEEeEEEEeC---------------CeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCC---cEEEEC
Confidence 3799999999993 3569999999999999999999999999999999999999864 999999
Q ss_pred CccCCC--hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccCC----cCCccc
Q 006897 135 CHQIKK--PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAGS----FVGDEE 208 (627)
Q Consensus 135 g~~~~~--~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~----~~gGe~ 208 (627)
|+++.. ..+.++.+||++|++.+++.+||+||+.++.... ..++.+++++++++.+||.+..++ ++||||
T Consensus 72 g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~----~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~ 147 (266)
T 4g1u_C 72 GQNLNSWQPKALARTRAVMRQYSELAFPFSVSEVIQMGRAPY----GGSQDRQALQQVMAQTDCLALAQRDYRVLSGGEQ 147 (266)
T ss_dssp TEETTTSCHHHHHHHEEEECSCCCCCSCCBHHHHHHGGGTTS----CSTTHHHHHHHHHHHTTCSTTTTSBGGGCCHHHH
T ss_pred CEECCcCCHHHHhheEEEEecCCccCCCCCHHHHHHhhhhhc----CcHHHHHHHHHHHHHcCChhHhcCCcccCCHHHH
Confidence 998743 3456778999999998888899999999875322 234456789999999999876654 569999
Q ss_pred cC------------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeE
Q 006897 209 NR------------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSV 264 (627)
Q Consensus 209 qr------------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~i 264 (627)
|| ||+|||+.++.+++++|++++++.|+|||++|||++ ++.++|||+++|++|++
T Consensus 148 QRv~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~-~~~~~~d~v~vl~~G~i 226 (266)
T 4g1u_C 148 QRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLN-LAALYADRIMLLAQGKL 226 (266)
T ss_dssp HHHHHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHH-HHHHHCSEEEEEETTEE
T ss_pred HHHHHHHHHhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHH-HHHHhCCEEEEEECCEE
Confidence 87 999999999999999999998776789999999998 58889999999999999
Q ss_pred EeeCCHHHHH
Q 006897 265 VHYGSLELLE 274 (627)
Q Consensus 265 v~~G~~~~~~ 274 (627)
++.|+++++.
T Consensus 227 ~~~g~~~~~~ 236 (266)
T 4g1u_C 227 VACGTPEEVL 236 (266)
T ss_dssp EEEECHHHHC
T ss_pred EEEcCHHHHh
Confidence 9999998873
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=8.4e-39 Score=324.58 Aligned_cols=200 Identities=28% Similarity=0.426 Sum_probs=173.7
Q ss_pred ceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEEC
Q 006897 55 CKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVN 134 (627)
Q Consensus 55 ~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~ 134 (627)
.+|+++||+++|+ ++.+|+||||++++||+++|+||||||||||+|+|+|+++|++ |+|.++
T Consensus 14 ~~l~i~~l~~~y~---------------~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~---G~I~~~ 75 (256)
T 1vpl_A 14 GAVVVKDLRKRIG---------------KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSS---GIVTVF 75 (256)
T ss_dssp CCEEEEEEEEEET---------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSE---EEEEET
T ss_pred CeEEEEEEEEEEC---------------CEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCc---eEEEEC
Confidence 4799999999993 3469999999999999999999999999999999999999863 999999
Q ss_pred CccCCC-hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccC----CcCCcccc
Q 006897 135 CHQIKK-PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAG----SFVGDEEN 209 (627)
Q Consensus 135 g~~~~~-~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~----~~~gGe~q 209 (627)
|+++.. ....++.+|||||++.+++.+||+||+.++.... +.+.++.+++++++++.+||++..+ +++|||+|
T Consensus 76 g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~--~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~q 153 (256)
T 1vpl_A 76 GKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFY--ASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVR 153 (256)
T ss_dssp TEETTTCHHHHHTTEEEECTTCCCCTTSBHHHHHHHHHHHH--CCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHH
T ss_pred CEECCccHHHHhhcEEEEcCCCCCCCCCcHHHHHHHHHHHc--CCChHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHH
Confidence 998643 3456778999999999999999999999975433 2344555678999999999987655 45699999
Q ss_pred C------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeCCHH
Q 006897 210 R------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGSLE 271 (627)
Q Consensus 210 r------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~ 271 (627)
| ||+|||+.++..+++.|+++++ .|+|||++|||++ ++.++||++++|++|++++.|+++
T Consensus 154 Rv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~-~g~tiiivtHd~~-~~~~~~d~v~~l~~G~i~~~g~~~ 231 (256)
T 1vpl_A 154 KLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQ-EGLTILVSSHNML-EVEFLCDRIALIHNGTIVETGTVE 231 (256)
T ss_dssp HHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH-TTCEEEEEECCHH-HHTTTCSEEEEEETTEEEEEEEHH
T ss_pred HHHHHHHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHh-CCCEEEEEcCCHH-HHHHHCCEEEEEECCEEEEecCHH
Confidence 9 9999999999999999999975 4899999999998 477889999999999999999998
Q ss_pred HHHHH
Q 006897 272 LLEET 276 (627)
Q Consensus 272 ~~~~~ 276 (627)
++.+.
T Consensus 232 ~~~~~ 236 (256)
T 1vpl_A 232 ELKER 236 (256)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 87543
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.7e-39 Score=318.29 Aligned_cols=191 Identities=26% Similarity=0.409 Sum_probs=165.9
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
+|+++||+++|+ ++++|+|+||++++||+++|+||||||||||+|+|+|+++|++ |+|.++|
T Consensus 4 ~l~~~~l~~~y~---------------~~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~---G~i~~~g 65 (224)
T 2pcj_A 4 ILRAENIKKVIR---------------GYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTE---GKVFLEG 65 (224)
T ss_dssp EEEEEEEEEEET---------------TEEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSE---EEEEETT
T ss_pred EEEEEeEEEEEC---------------CEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCc---eEEEECC
Confidence 699999999993 2469999999999999999999999999999999999999863 9999999
Q ss_pred ccCCC--hh---hhc-ccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccC----CcCC
Q 006897 136 HQIKK--PA---QLR-KICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAG----SFVG 205 (627)
Q Consensus 136 ~~~~~--~~---~~r-~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~----~~~g 205 (627)
+++.. .. .++ +.+|||||++.+++.+||+||+.++...+ +.++++.+++++++++.+||.+..+ +++|
T Consensus 66 ~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSg 143 (224)
T 2pcj_A 66 KEVDYTNEKELSLLRNRKLGFVFQFHYLIPELTALENVIVPMLKM--GKPKKEAKERGEYLLSELGLGDKLSRKPYELSG 143 (224)
T ss_dssp EECCSSCHHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHT--TCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCH
T ss_pred EECCCCCHHHHHHHHhCcEEEEecCcccCCCCCHHHHHHhHHHHc--CCCHHHHHHHHHHHHHHcCCchhhhCChhhCCH
Confidence 98643 11 233 67999999999999999999999976443 2344566778999999999987665 4569
Q ss_pred ccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEee
Q 006897 206 DEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHY 267 (627)
Q Consensus 206 Ge~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~ 267 (627)
||||| ||+|||+.++..+++.|++++++ |+|||++|||++. + ++||++++|++|++++.
T Consensus 144 Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~-g~tvi~vtHd~~~-~-~~~d~v~~l~~G~i~~~ 220 (224)
T 2pcj_A 144 GEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEG-GTSIVMVTHEREL-A-ELTHRTLEMKDGKVVGE 220 (224)
T ss_dssp HHHHHHHHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEECSCHHH-H-TTSSEEEEEETTEEEEE
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEcCCHHH-H-HhCCEEEEEECCEEEEE
Confidence 99999 99999999999999999999875 9999999999873 5 89999999999999998
Q ss_pred CC
Q 006897 268 GS 269 (627)
Q Consensus 268 G~ 269 (627)
|+
T Consensus 221 g~ 222 (224)
T 2pcj_A 221 IT 222 (224)
T ss_dssp EE
T ss_pred ee
Confidence 85
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-39 Score=337.87 Aligned_cols=194 Identities=22% Similarity=0.379 Sum_probs=171.2
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
+|+++||+++|+ ++ +|+|+||++++||+++|+||||||||||||+|+|+++|++ |+|.++|
T Consensus 1 ml~~~~l~~~y~---------------~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~---G~I~~~g 61 (348)
T 3d31_A 1 MIEIESLSRKWK---------------NF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDS---GRILLDG 61 (348)
T ss_dssp CEEEEEEEEECS---------------SC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSE---EEEEETT
T ss_pred CEEEEEEEEEEC---------------CE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCC---cEEEECC
Confidence 489999999992 34 9999999999999999999999999999999999999864 9999999
Q ss_pred ccCCChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccCC----cCCccccC-
Q 006897 136 HQIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAGS----FVGDEENR- 210 (627)
Q Consensus 136 ~~~~~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~----~~gGe~qr- 210 (627)
+++.+....++.+|||||+..+|+.+||+||+.|+...+. .+++ ++++++++.+||++..++ ++||||||
T Consensus 62 ~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~~--~~~~---~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRv 136 (348)
T 3d31_A 62 KDVTDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKK--IKDP---KRVLDTARDLKIEHLLDRNPLTLSGGEQQRV 136 (348)
T ss_dssp EECTTSCHHHHTCEEECTTCCCCTTSCHHHHHHHHHHHHC--CCCH---HHHHHHHHHTTCTTTTTSCGGGSCHHHHHHH
T ss_pred EECCCCchhhCcEEEEecCcccCCCCCHHHHHHHHHHHcC--CCHH---HHHHHHHHHcCCchHhcCChhhCCHHHHHHH
Confidence 9864433456789999999999999999999999875432 2222 779999999999877664 56999999
Q ss_pred -----------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeCCHHHH
Q 006897 211 -----------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGSLELL 273 (627)
Q Consensus 211 -----------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~ 273 (627)
||++||+..+.++.+.|+++.++.|+|+|++|||++ ++.++|||+++|++|+++..|+++++
T Consensus 137 alAraL~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~-~~~~~adri~vl~~G~i~~~g~~~~~ 215 (348)
T 3d31_A 137 ALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQT-EARIMADRIAVVMDGKLIQVGKPEEI 215 (348)
T ss_dssp HHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHH-HHHHHCSEEEEESSSCEEEEECHHHH
T ss_pred HHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEECCHHHH
Confidence 999999999999999999998777999999999998 58899999999999999999999887
Q ss_pred H
Q 006897 274 E 274 (627)
Q Consensus 274 ~ 274 (627)
.
T Consensus 216 ~ 216 (348)
T 3d31_A 216 F 216 (348)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-39 Score=327.25 Aligned_cols=198 Identities=19% Similarity=0.298 Sum_probs=169.6
Q ss_pred ceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEEC
Q 006897 55 CKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVN 134 (627)
Q Consensus 55 ~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~ 134 (627)
.+|+++||+++|+ ++++|+||||++++||+++|+||||||||||+|+|+|+++|++ |+|.++
T Consensus 6 ~~l~i~~l~~~y~---------------~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~---G~i~~~ 67 (257)
T 1g6h_A 6 EILRTENIVKYFG---------------EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADE---GRVYFE 67 (257)
T ss_dssp EEEEEEEEEEEET---------------TEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSE---EEEEET
T ss_pred cEEEEeeeEEEEC---------------CEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---cEEEEC
Confidence 3799999999993 3469999999999999999999999999999999999999863 999999
Q ss_pred CccCCC--h-hhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCC-----------CCHHHHHHHHHHHHHHcCCcccc
Q 006897 135 CHQIKK--P-AQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKG-----------MSHKEKEDRVESLMDELGLTHVA 200 (627)
Q Consensus 135 g~~~~~--~-~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~-----------~~~~~~~~~v~~~l~~lgL~~~~ 200 (627)
|+++.. . ...++.+|||||++.+++.+||+||+.++......+ ..+++.+++++++++.+||++..
T Consensus 68 g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~ 147 (257)
T 1g6h_A 68 NKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLY 147 (257)
T ss_dssp TEECTTCCHHHHHHHTEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGT
T ss_pred CEECCCCCHHHHHhCCEEEEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhh
Confidence 998643 1 234668999999999999999999999864320011 22345567899999999998766
Q ss_pred CC----cCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhhee
Q 006897 201 GS----FVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLI 258 (627)
Q Consensus 201 ~~----~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~v 258 (627)
++ ++|||||| ||+|||+.++..+++.|++++++ |+|||++|||++ ++.++|||+++
T Consensus 148 ~~~~~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~-g~tvi~vtHd~~-~~~~~~d~v~~ 225 (257)
T 1g6h_A 148 DRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAK-GITFLIIEHRLD-IVLNYIDHLYV 225 (257)
T ss_dssp TSBGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEECSCCS-TTGGGCSEEEE
T ss_pred CCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCHH-HHHHhCCEEEE
Confidence 54 56999999 99999999999999999999765 999999999998 47889999999
Q ss_pred ecCCeEEeeCCHHH
Q 006897 259 LSRGSVVHYGSLEL 272 (627)
Q Consensus 259 L~~G~iv~~G~~~~ 272 (627)
|++|++++.|++++
T Consensus 226 l~~G~i~~~g~~~~ 239 (257)
T 1g6h_A 226 MFNGQIIAEGRGEE 239 (257)
T ss_dssp EETTEEEEEEESHH
T ss_pred EECCEEEEEeCHHH
Confidence 99999999999887
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-38 Score=318.42 Aligned_cols=197 Identities=23% Similarity=0.327 Sum_probs=167.7
Q ss_pred ceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEEC
Q 006897 55 CKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVN 134 (627)
Q Consensus 55 ~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~ 134 (627)
++|+++||+++|+ ++++|+|+||++++||+++|+||||||||||+|+|+|+++|++ |+|.++
T Consensus 5 ~~l~~~~l~~~y~---------------~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~---G~i~~~ 66 (240)
T 1ji0_A 5 IVLEVQSLHVYYG---------------AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQK---GKIIFN 66 (240)
T ss_dssp EEEEEEEEEEEET---------------TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSE---EEEEET
T ss_pred ceEEEEeEEEEEC---------------CeeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---ceEEEC
Confidence 3799999999993 2469999999999999999999999999999999999999863 999999
Q ss_pred CccCCC--hhh-hcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcC-Ccccc----CCcCCc
Q 006897 135 CHQIKK--PAQ-LRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELG-LTHVA----GSFVGD 206 (627)
Q Consensus 135 g~~~~~--~~~-~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lg-L~~~~----~~~~gG 206 (627)
|+++.. ..+ .++.+|||||++.+++.+||+||+.++... ....++.+++++++++.++ |.+.. .+++||
T Consensus 67 g~~~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~---~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LSgG 143 (240)
T 1ji0_A 67 GQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYN---RKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGG 143 (240)
T ss_dssp TEECTTCCHHHHHHTTEEEECSSCCCCTTSBHHHHHHGGGTT---CCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHH
T ss_pred CEECCCCCHHHHHhCCEEEEecCCccCCCCcHHHHHHHhhhc---CCCHHHHHHHHHHHHHHcccHhhHhcCChhhCCHH
Confidence 998643 222 345699999999999999999999986311 1223445677889999994 86554 456699
Q ss_pred cccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeC
Q 006897 207 EENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYG 268 (627)
Q Consensus 207 e~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G 268 (627)
|||| ||+|||+.++..+++.|+++++ .|+|||++|||++ ++.++|||+++|++|++++.|
T Consensus 144 q~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~-~g~tvi~vtHd~~-~~~~~~d~v~~l~~G~i~~~g 221 (240)
T 1ji0_A 144 EQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQ-EGTTILLVEQNAL-GALKVAHYGYVLETGQIVLEG 221 (240)
T ss_dssp HHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHH-TTCCEEEEESCHH-HHHHHCSEEEEEETTEEEEEE
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEEc
Confidence 9999 9999999999999999999976 5899999999998 488999999999999999999
Q ss_pred CHHHHH
Q 006897 269 SLELLE 274 (627)
Q Consensus 269 ~~~~~~ 274 (627)
+++++.
T Consensus 222 ~~~~~~ 227 (240)
T 1ji0_A 222 KASELL 227 (240)
T ss_dssp EHHHHH
T ss_pred CHHHHh
Confidence 988764
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-38 Score=318.39 Aligned_cols=193 Identities=22% Similarity=0.355 Sum_probs=166.7
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
+|+++||+++|+ + +|+|+||++++ |+++|+||||||||||+|+|+|+++|++ |+|.++|
T Consensus 1 ml~~~~l~~~y~---------------~--~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~---G~i~~~g 59 (240)
T 2onk_A 1 MFLKVRAEKRLG---------------N--FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDR---GEVRLNG 59 (240)
T ss_dssp CCEEEEEEEEET---------------T--EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSE---EEEEETT
T ss_pred CEEEEEEEEEeC---------------C--EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCc---eEEEECC
Confidence 378999999992 1 59999999999 9999999999999999999999999863 9999999
Q ss_pred ccCCChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccC----CcCCccccC-
Q 006897 136 HQIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAG----SFVGDEENR- 210 (627)
Q Consensus 136 ~~~~~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~----~~~gGe~qr- 210 (627)
+++......++.+|||||++.+++.+||+||+.++... .+ ....+++++++++.+||.+..+ +++|||+||
T Consensus 60 ~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~--~~--~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv 135 (240)
T 2onk_A 60 ADITPLPPERRGIGFVPQDYALFPHLSVYRNIAYGLRN--VE--RVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRV 135 (240)
T ss_dssp EECTTSCTTTSCCBCCCSSCCCCTTSCHHHHHHTTCTT--SC--HHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHH
T ss_pred EECCcCchhhCcEEEEcCCCccCCCCcHHHHHHHHHHH--cC--CchHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHH
Confidence 98643334567899999999999999999999986422 11 2223678999999999987665 456999999
Q ss_pred -----------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeCCHHHH
Q 006897 211 -----------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGSLELL 273 (627)
Q Consensus 211 -----------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~ 273 (627)
||+|||+.++..+++.|++++++.|+|||++|||++ ++.++||++++|++|++++.|+++++
T Consensus 136 ~lAral~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~d~i~~l~~G~i~~~g~~~~~ 214 (240)
T 2onk_A 136 ALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLI-EAAMLADEVAVMLNGRIVEKGKLKEL 214 (240)
T ss_dssp HHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHH-HHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEECCHHHH
Confidence 999999999999999999997656899999999998 48899999999999999999999877
Q ss_pred H
Q 006897 274 E 274 (627)
Q Consensus 274 ~ 274 (627)
.
T Consensus 215 ~ 215 (240)
T 2onk_A 215 F 215 (240)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-37 Score=318.44 Aligned_cols=202 Identities=22% Similarity=0.342 Sum_probs=168.7
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
+|+++||+++|+.+. ...+.+|+|+||++++||+++|+||||||||||+|+|+|+++|++ |+|.++|
T Consensus 2 ~l~~~~l~~~y~~~~----------~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~---G~I~~~g 68 (266)
T 2yz2_A 2 RIEVVNVSHIFHRGT----------PLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTS---GDVLYDG 68 (266)
T ss_dssp CEEEEEEEEEESTTS----------TTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSE---EEEEETT
T ss_pred EEEEEEEEEEecCCC----------ccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCC---cEEEECC
Confidence 589999999994110 001469999999999999999999999999999999999999863 9999999
Q ss_pred ccCCChhhhcccEEEEccCC-CCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCc--cccC----CcCCccc
Q 006897 136 HQIKKPAQLRKICGFVAQED-NLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLT--HVAG----SFVGDEE 208 (627)
Q Consensus 136 ~~~~~~~~~r~~ig~v~Q~~-~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~--~~~~----~~~gGe~ 208 (627)
+++... .+++.+|||+|++ .+++.+||+||+.++.... .+.++.+++++++++.+||+ +..+ +++|||+
T Consensus 69 ~~~~~~-~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~ 144 (266)
T 2yz2_A 69 ERKKGY-EIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNF---YPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEK 144 (266)
T ss_dssp EECCHH-HHGGGEEEECSSGGGGCCCSSHHHHHHHTTTTT---CTTSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHH
T ss_pred EECchH-HhhhhEEEEeccchhhcCCCcHHHHHHHHHHhc---CCHHHHHHHHHHHHHHcCcCCcccccCChhhCCHHHH
Confidence 885432 5677899999995 4566789999999864221 12233456789999999998 7655 4569999
Q ss_pred cC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeCCH
Q 006897 209 NR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGSL 270 (627)
Q Consensus 209 qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~ 270 (627)
|| ||+|||+.++..+++.|++++++ |+|||++|||++. +.++||++++|++|++++.|++
T Consensus 145 qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~-g~tii~vtHd~~~-~~~~~d~v~~l~~G~i~~~g~~ 222 (266)
T 2yz2_A 145 RRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTL-GKTVILISHDIET-VINHVDRVVVLEKGKKVFDGTR 222 (266)
T ss_dssp HHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEECSCCTT-TGGGCSEEEEEETTEEEEEEEH
T ss_pred HHHHHHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHc-CCEEEEEeCCHHH-HHHhCCEEEEEECCEEEEeCCH
Confidence 99 99999999999999999999765 8999999999984 7788999999999999999999
Q ss_pred HHHHHH
Q 006897 271 ELLEET 276 (627)
Q Consensus 271 ~~~~~~ 276 (627)
+++.+.
T Consensus 223 ~~~~~~ 228 (266)
T 2yz2_A 223 MEFLEK 228 (266)
T ss_dssp HHHHHH
T ss_pred HHHhcC
Confidence 887643
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-37 Score=320.21 Aligned_cols=199 Identities=20% Similarity=0.266 Sum_probs=165.7
Q ss_pred ceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEEC
Q 006897 55 CKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVN 134 (627)
Q Consensus 55 ~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~ 134 (627)
.+|+++||+++|+ ++++|+||||++++||+++|+||||||||||+|+|+|+++|++ |+|.++
T Consensus 20 ~~l~~~~l~~~y~---------------~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~---G~I~~~ 81 (279)
T 2ihy_A 20 MLIQLDQIGRMKQ---------------GKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATS---GTVNLF 81 (279)
T ss_dssp EEEEEEEEEEEET---------------TEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSE---EEEEET
T ss_pred ceEEEEeEEEEEC---------------CEEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCC---eEEEEC
Confidence 4799999999993 3469999999999999999999999999999999999999864 999999
Q ss_pred CccCC--C--hhhhcccEEEEccCCCC--CCCCCHHHHHHHHHHh--cCCCCCHHHHHHHHHHHHHHcCCccccCC----
Q 006897 135 CHQIK--K--PAQLRKICGFVAQEDNL--LPLLTVKETLMFSANF--RLKGMSHKEKEDRVESLMDELGLTHVAGS---- 202 (627)
Q Consensus 135 g~~~~--~--~~~~r~~ig~v~Q~~~l--~~~lTV~e~l~~~~~~--~~~~~~~~~~~~~v~~~l~~lgL~~~~~~---- 202 (627)
|+++. . ...+++.+|||+|++.+ .+.+||+||+.++... ...+...++..++++++++.+||++..++
T Consensus 82 g~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~ 161 (279)
T 2ihy_A 82 GKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIGY 161 (279)
T ss_dssp TBCCC---CCHHHHHTTEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBGGG
T ss_pred CEEcccccCCHHHHcCcEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCChhh
Confidence 98864 2 34567889999999653 3356999999885311 00111223456789999999999876654
Q ss_pred cCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEE--EEEccCccHHHHHHhhhheeecCC
Q 006897 203 FVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTV--VLSIHQPSYRILQYISKFLILSRG 262 (627)
Q Consensus 203 ~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Ti--i~~tH~~~~~i~~~~D~i~vL~~G 262 (627)
++|||||| ||+|||+.++..++++|++++++ |+|| |++|||++ ++.++||++++|++|
T Consensus 162 LSgGqkqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~-g~tv~~iivtHd~~-~~~~~~d~v~~l~~G 239 (279)
T 2ihy_A 162 LSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDS-YPTLAMIYVTHFIE-EITANFSKILLLKDG 239 (279)
T ss_dssp SCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHH-CTTCEEEEEESCGG-GCCTTCCEEEEEETT
T ss_pred CCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHC-CCEEEEEEEecCHH-HHHHhCCEEEEEECC
Confidence 56999999 99999999999999999999876 8999 99999998 477899999999999
Q ss_pred eEEeeCCHHHH
Q 006897 263 SVVHYGSLELL 273 (627)
Q Consensus 263 ~iv~~G~~~~~ 273 (627)
++++.|+++++
T Consensus 240 ~i~~~g~~~~~ 250 (279)
T 2ihy_A 240 QSIQQGAVEDI 250 (279)
T ss_dssp EEEEEEEHHHH
T ss_pred EEEEECCHHHH
Confidence 99999998776
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-37 Score=319.78 Aligned_cols=190 Identities=26% Similarity=0.419 Sum_probs=159.5
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
.|+++||+++|+. .+.+|+||||+|++||++||+||||||||||+|+|+|+++|++ |+|.++|
T Consensus 53 ~i~~~~vs~~y~~--------------~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~---G~I~i~G 115 (306)
T 3nh6_A 53 RIEFENVHFSYAD--------------GRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISS---GCIRIDG 115 (306)
T ss_dssp CEEEEEEEEESST--------------TCEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCSE---EEEEETT
T ss_pred eEEEEEEEEEcCC--------------CCceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCC---cEEEECC
Confidence 5999999999942 2469999999999999999999999999999999999999864 9999999
Q ss_pred ccCCC--hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCcccc-------------
Q 006897 136 HQIKK--PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVA------------- 200 (627)
Q Consensus 136 ~~~~~--~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~------------- 200 (627)
+++.. ...+|+.||||||++.+|+ .||+|||.++.. ... .++++++++.+++.+..
T Consensus 116 ~~i~~~~~~~~r~~i~~v~Q~~~lf~-~Tv~eNi~~~~~----~~~----~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~ 186 (306)
T 3nh6_A 116 QDISQVTQASLRSHIGVVPQDTVLFN-DTIADNIRYGRV----TAG----NDEVEAAAQAAGIHDAIMAFPEGYRTQVGE 186 (306)
T ss_dssp EETTSBCHHHHHHTEEEECSSCCCCS-EEHHHHHHTTST----TCC----HHHHHHHHHHHTCHHHHHHSTTGGGCEEST
T ss_pred EEcccCCHHHHhcceEEEecCCccCc-ccHHHHHHhhcc----cCC----HHHHHHHHHHhCcHHHHHhccchhhhHhcC
Confidence 99743 3567889999999999986 499999998631 112 23455566666554321
Q ss_pred --CCcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeec
Q 006897 201 --GSFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILS 260 (627)
Q Consensus 201 --~~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~ 260 (627)
..++|||||| ||++||+.++..+.+.|+++.+ ++|+|+|||+++. +. .||+|++|+
T Consensus 187 ~g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~--~~Tvi~itH~l~~-~~-~aD~i~vl~ 262 (306)
T 3nh6_A 187 RGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCA--NRTTIVVAHRLST-VV-NADQILVIK 262 (306)
T ss_dssp TSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHT--TSEEEEECCSHHH-HH-TCSEEEEEE
T ss_pred CcCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcC--CCEEEEEEcChHH-HH-cCCEEEEEE
Confidence 3567999999 9999999999999999999863 6899999999984 54 599999999
Q ss_pred CCeEEeeCCHHHHHH
Q 006897 261 RGSVVHYGSLELLEE 275 (627)
Q Consensus 261 ~G~iv~~G~~~~~~~ 275 (627)
+|++++.|+++++.+
T Consensus 263 ~G~iv~~G~~~el~~ 277 (306)
T 3nh6_A 263 DGCIVERGRHEALLS 277 (306)
T ss_dssp TTEEEEEECHHHHHH
T ss_pred CCEEEEECCHHHHHh
Confidence 999999999998864
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.3e-37 Score=309.36 Aligned_cols=197 Identities=24% Similarity=0.285 Sum_probs=160.1
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcC--CCCCCCccceEEE
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGR--VRDQDFDPRSITV 133 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl--~~~~~~~~G~i~i 133 (627)
+|+++||+++|+ ++.+|+||||++++||+++|+||||||||||+|+|+|+ ++|+ .|+|.+
T Consensus 3 ~l~~~~l~~~y~---------------~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~---~G~I~~ 64 (250)
T 2d2e_A 3 QLEIRDLWASID---------------GETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVE---RGEILL 64 (250)
T ss_dssp EEEEEEEEEEET---------------TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEE---EEEEEE
T ss_pred eEEEEeEEEEEC---------------CEEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCC---ceEEEE
Confidence 699999999993 34699999999999999999999999999999999998 6664 499999
Q ss_pred CCccCCC--hhh-hcccEEEEccCCCCCCCCCHHHHHHHHHHh-cCCCCCHHHHHHHHHHHHHHcCC-ccccC----C-c
Q 006897 134 NCHQIKK--PAQ-LRKICGFVAQEDNLLPLLTVKETLMFSANF-RLKGMSHKEKEDRVESLMDELGL-THVAG----S-F 203 (627)
Q Consensus 134 ~g~~~~~--~~~-~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~-~~~~~~~~~~~~~v~~~l~~lgL-~~~~~----~-~ 203 (627)
+|+++.. ... .++.++||+|++.+++.+||+||+.++... .......++..++++++++.+|| .+..+ + +
T Consensus 65 ~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~L 144 (250)
T 2d2e_A 65 DGENILELSPDERARKGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGF 144 (250)
T ss_dssp TTEECTTSCHHHHHHTTBCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC-
T ss_pred CCEECCCCCHHHHHhCcEEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCC
Confidence 9998643 222 245699999999999999999999986532 11112334556789999999999 45443 4 8
Q ss_pred CCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHH-hhhheeecCCeE
Q 006897 204 VGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQY-ISKFLILSRGSV 264 (627)
Q Consensus 204 ~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~-~D~i~vL~~G~i 264 (627)
+|||||| ||+|||+.++..+++.|+++++ .|+|||++|||++. +..+ ||++++|++|++
T Consensus 145 SgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~-~g~tvi~vtHd~~~-~~~~~~d~v~~l~~G~i 222 (250)
T 2d2e_A 145 SGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRG-PNFGALVITHYQRI-LNYIQPDKVHVMMDGRV 222 (250)
T ss_dssp ---HHHHHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCS-TTCEEEEECSSSGG-GGTSCCSEEEEEETTEE
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-cCCEEEEEecCHHH-HHHhcCCEEEEEECCEE
Confidence 8999999 9999999999999999999964 58999999999984 6667 599999999999
Q ss_pred EeeCCHHH
Q 006897 265 VHYGSLEL 272 (627)
Q Consensus 265 v~~G~~~~ 272 (627)
++.|+++.
T Consensus 223 ~~~g~~~~ 230 (250)
T 2d2e_A 223 VATGGPEL 230 (250)
T ss_dssp EEEESHHH
T ss_pred EEEeCHHH
Confidence 99999873
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-36 Score=303.75 Aligned_cols=188 Identities=26% Similarity=0.408 Sum_probs=160.8
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
+|+++||+++|+. ++.+|+|+||++++||+++|+||||||||||+|+|+|+++|++ |+|.
T Consensus 4 ~l~i~~l~~~y~~--------------~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~---G~I~--- 63 (253)
T 2nq2_C 4 ALSVENLGFYYQA--------------ENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQ---GKIE--- 63 (253)
T ss_dssp EEEEEEEEEEETT--------------TTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSE---EEEE---
T ss_pred eEEEeeEEEEeCC--------------CCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---cEEE---
Confidence 6999999999931 3469999999999999999999999999999999999999863 9997
Q ss_pred ccCCChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCC--CCCHHHHHHHHHHHHHHcCCccccCC----cCCcccc
Q 006897 136 HQIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLK--GMSHKEKEDRVESLMDELGLTHVAGS----FVGDEEN 209 (627)
Q Consensus 136 ~~~~~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~--~~~~~~~~~~v~~~l~~lgL~~~~~~----~~gGe~q 209 (627)
.++.+|||||++.+++.+||+||+.++...... ....++.+++++++++.+||++..++ ++|||+|
T Consensus 64 --------~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~q 135 (253)
T 2nq2_C 64 --------VYQSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREFTSLSGGQRQ 135 (253)
T ss_dssp --------ECSCEEEECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHH
T ss_pred --------EeccEEEEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCChhhCCHHHHH
Confidence 245799999999988889999999986422111 01234456789999999999876654 5699999
Q ss_pred C------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeCCHH
Q 006897 210 R------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGSLE 271 (627)
Q Consensus 210 r------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~ 271 (627)
| ||+|||+.++..+++.|++++++.|+|||++|||++ ++.++||++++|++|+ ++.|+++
T Consensus 136 rv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~d~v~~l~~G~-~~~g~~~ 213 (253)
T 2nq2_C 136 LILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPN-QVVAIANKTLLLNKQN-FKFGETR 213 (253)
T ss_dssp HHHHHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHH-HHHHHCSEEEEEETTE-EEEEEHH
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEeCCe-EecCCHH
Confidence 9 999999999999999999997655899999999998 4788999999999999 9999987
Q ss_pred HH
Q 006897 272 LL 273 (627)
Q Consensus 272 ~~ 273 (627)
++
T Consensus 214 ~~ 215 (253)
T 2nq2_C 214 NI 215 (253)
T ss_dssp HH
T ss_pred HH
Confidence 76
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-36 Score=307.43 Aligned_cols=207 Identities=20% Similarity=0.324 Sum_probs=167.8
Q ss_pred ceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCC--CCCCCccceEE
Q 006897 55 CKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRV--RDQDFDPRSIT 132 (627)
Q Consensus 55 ~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~--~~~~~~~G~i~ 132 (627)
.+|+++||+++|+ ++.+|+||||+|++||+++|+||||||||||+|+|+|++ +|+ .|+|.
T Consensus 19 ~~l~~~~l~~~y~---------------~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~---~G~I~ 80 (267)
T 2zu0_C 19 HMLSIKDLHVSVE---------------DKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVT---GGTVE 80 (267)
T ss_dssp -CEEEEEEEEEET---------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEE---EEEEE
T ss_pred ceEEEEeEEEEEC---------------CEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCC---CeEEE
Confidence 3799999999993 346999999999999999999999999999999999994 453 49999
Q ss_pred ECCccCCC--hhhh-cccEEEEccCCCCCCCCCHHHHHHHHHH-h----cCCCCCHHHHHHHHHHHHHHcCCc-cccC--
Q 006897 133 VNCHQIKK--PAQL-RKICGFVAQEDNLLPLLTVKETLMFSAN-F----RLKGMSHKEKEDRVESLMDELGLT-HVAG-- 201 (627)
Q Consensus 133 i~g~~~~~--~~~~-r~~ig~v~Q~~~l~~~lTV~e~l~~~~~-~----~~~~~~~~~~~~~v~~~l~~lgL~-~~~~-- 201 (627)
++|+++.. .... ++.++||+|++.+++.+||.||+.+... . .....+.++.+++++++++.+||. +..+
T Consensus 81 ~~g~~i~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~ 160 (267)
T 2zu0_C 81 FKGKDLLALSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRS 160 (267)
T ss_dssp ETTEEGGGSCHHHHHHHTEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSB
T ss_pred ECCEECCcCCHHHHhhCCEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCC
Confidence 99988632 2222 3469999999999999999999987542 1 111123445567899999999995 3332
Q ss_pred ---CcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHH-hhhheee
Q 006897 202 ---SFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQY-ISKFLIL 259 (627)
Q Consensus 202 ---~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~-~D~i~vL 259 (627)
+++|||||| ||+|||+.++..+++.|+++++ .|+|||++|||++. +..+ |||+++|
T Consensus 161 ~~~~LSgGq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~-~g~tviivtHd~~~-~~~~~~d~v~~l 238 (267)
T 2zu0_C 161 VNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRD-GKRSFIIVTHYQRI-LDYIKPDYVHVL 238 (267)
T ss_dssp TTTTCCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCC-SSCEEEEECSSGGG-GGTSCCSEEEEE
T ss_pred cccCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEeeCHHH-HHhhcCCEEEEE
Confidence 378999999 9999999999999999999864 58999999999984 6665 8999999
Q ss_pred cCCeEEeeCCHHHHHHHHHhcCC
Q 006897 260 SRGSVVHYGSLELLEETINNLGY 282 (627)
Q Consensus 260 ~~G~iv~~G~~~~~~~~~~~~g~ 282 (627)
++|++++.|+++++.. +...++
T Consensus 239 ~~G~i~~~g~~~~~~~-~~~~~~ 260 (267)
T 2zu0_C 239 YQGRIVKSGDFTLVKQ-LEEQGY 260 (267)
T ss_dssp ETTEEEEEECTTHHHH-HHTTTC
T ss_pred ECCEEEEEcCHHHHhh-hhhcch
Confidence 9999999999887653 334333
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-36 Score=304.36 Aligned_cols=190 Identities=24% Similarity=0.446 Sum_probs=159.7
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
.++++||+++|+. +++.+|+||||+|++||+++|+||||||||||+|+|+|+++|++ |+|.++|
T Consensus 7 ~~~~~~l~~~y~~-------------~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~---G~I~i~g 70 (247)
T 2ff7_A 7 DITFRNIRFRYKP-------------DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPEN---GQVLIDG 70 (247)
T ss_dssp EEEEEEEEEESST-------------TSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSE---EEEEETT
T ss_pred ceeEEEEEEEeCC-------------CCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCC---cEEEECC
Confidence 6899999999931 12469999999999999999999999999999999999999863 9999999
Q ss_pred ccCCC--hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCcccc-------------
Q 006897 136 HQIKK--PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVA------------- 200 (627)
Q Consensus 136 ~~~~~--~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~------------- 200 (627)
+++.. ...+++.+|||||++.+++ .||+||+.++. .... +++++++++.+++.+..
T Consensus 71 ~~~~~~~~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~----~~~~----~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~ 141 (247)
T 2ff7_A 71 HDLALADPNWLRRQVGVVLQDNVLLN-RSIIDNISLAN----PGMS----VEKVIYAAKLAGAHDFISELREGYNTIVGE 141 (247)
T ss_dssp EETTTSCHHHHHHHEEEECSSCCCTT-SBHHHHHTTTC----TTCC----HHHHHHHHHHHTCHHHHHTSTTGGGCBCST
T ss_pred EEhhhCCHHHHHhcEEEEeCCCcccc-ccHHHHHhccC----CCCC----HHHHHHHHHHhChHHHHHhCcchhhhhhhC
Confidence 98643 3456778999999998887 59999998752 1112 34567778888876432
Q ss_pred --CCcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeec
Q 006897 201 --GSFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILS 260 (627)
Q Consensus 201 --~~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~ 260 (627)
.+++|||||| ||+|||+.++..+++.|++++ .|+|||++|||++. + +.||++++|+
T Consensus 142 ~~~~LSgGq~qRv~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~--~g~tviivtH~~~~-~-~~~d~v~~l~ 217 (247)
T 2ff7_A 142 QGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKIC--KGRTVIIIAHRLST-V-KNADRIIVME 217 (247)
T ss_dssp TTTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHH--TTSEEEEECSSGGG-G-TTSSEEEEEE
T ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc--CCCEEEEEeCCHHH-H-HhCCEEEEEE
Confidence 4677999999 999999999999999999994 38999999999984 5 4699999999
Q ss_pred CCeEEeeCCHHHHH
Q 006897 261 RGSVVHYGSLELLE 274 (627)
Q Consensus 261 ~G~iv~~G~~~~~~ 274 (627)
+|++++.|+++++.
T Consensus 218 ~G~i~~~g~~~~l~ 231 (247)
T 2ff7_A 218 KGKIVEQGKHKELL 231 (247)
T ss_dssp TTEEEEEECHHHHH
T ss_pred CCEEEEECCHHHHH
Confidence 99999999988764
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-36 Score=311.21 Aligned_cols=199 Identities=22% Similarity=0.333 Sum_probs=162.2
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
+|+++||+++|+.+ +.+.+|+||||+|++||+++|+||||||||||+|+|+|+++|++ |+|.++|
T Consensus 16 ~l~~~~l~~~y~~~------------~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~---G~I~~~g 80 (271)
T 2ixe_A 16 LVKFQDVSFAYPNH------------PNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTG---GKVLLDG 80 (271)
T ss_dssp CEEEEEEEECCTTC------------TTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSE---EEEEETT
T ss_pred eEEEEEEEEEeCCC------------CCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCC---CEEEECC
Confidence 69999999999421 12469999999999999999999999999999999999999863 9999999
Q ss_pred ccCCC--hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHH-----HHHHHHHHHHHc--CCcccc----CC
Q 006897 136 HQIKK--PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKE-----KEDRVESLMDEL--GLTHVA----GS 202 (627)
Q Consensus 136 ~~~~~--~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~-----~~~~v~~~l~~l--gL~~~~----~~ 202 (627)
+++.. ...+++.+|||||++.+++ .||+||+.++.. ... ..++ ....++++++.+ ||++.. .+
T Consensus 81 ~~i~~~~~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~~--~~~-~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~ 156 (271)
T 2ixe_A 81 EPLVQYDHHYLHTQVAAVGQEPLLFG-RSFRENIAYGLT--RTP-TMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQ 156 (271)
T ss_dssp EEGGGBCHHHHHHHEEEECSSCCCCS-SBHHHHHHTTCS--SCC-CHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTT
T ss_pred EEcccCCHHHHhccEEEEecCCcccc-ccHHHHHhhhcc--cCC-hHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCC
Confidence 88632 3446778999999998887 599999998631 111 1011 123456778887 665544 46
Q ss_pred cCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeE
Q 006897 203 FVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSV 264 (627)
Q Consensus 203 ~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~i 264 (627)
++|||+|| ||+|||+.++..+++.|++++++.|+|||++|||++. +. .||++++|++|++
T Consensus 157 LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~-~~-~~d~v~~l~~G~i 234 (271)
T 2ixe_A 157 LSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSL-AE-RAHHILFLKEGSV 234 (271)
T ss_dssp SCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHH-HT-TCSEEEEEETTEE
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHH-HH-hCCEEEEEECCEE
Confidence 77999999 9999999999999999999865568999999999973 54 5999999999999
Q ss_pred EeeCCHHHHHH
Q 006897 265 VHYGSLELLEE 275 (627)
Q Consensus 265 v~~G~~~~~~~ 275 (627)
++.|+++++.+
T Consensus 235 ~~~g~~~~l~~ 245 (271)
T 2ixe_A 235 CEQGTHLQLME 245 (271)
T ss_dssp EEEECHHHHHH
T ss_pred EEECCHHHHHh
Confidence 99999988754
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-35 Score=298.05 Aligned_cols=186 Identities=22% Similarity=0.319 Sum_probs=161.8
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
+|+++||+++ .+|+|+||++++||+++|+||||||||||+|+|+|+++| + |+|.++|
T Consensus 4 ~l~~~~l~~~-------------------~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p---~-G~i~~~g 60 (249)
T 2qi9_C 4 VMQLQDVAES-------------------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG---K-GSIQFAG 60 (249)
T ss_dssp EEEEEEEEET-------------------TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCC---E-EEEEETT
T ss_pred EEEEEceEEE-------------------EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC---C-eEEEECC
Confidence 6899999873 389999999999999999999999999999999999987 5 9999999
Q ss_pred ccCCC--hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccC----CcCCcccc
Q 006897 136 HQIKK--PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAG----SFVGDEEN 209 (627)
Q Consensus 136 ~~~~~--~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~----~~~gGe~q 209 (627)
+++.. ...+++.+|||+|++.+++.+||+||+.++. ..... +++++++++.+||++..+ +++|||+|
T Consensus 61 ~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~---~~~~~----~~~~~~~l~~~~l~~~~~~~~~~LSgGq~q 133 (249)
T 2qi9_C 61 QPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQ---HDKTR----TELLNDVAGALALDDKLGRSTNQLSGGEWQ 133 (249)
T ss_dssp EEGGGSCHHHHHHHEEEECSCCCCCTTCBHHHHHHTTC---SSTTC----HHHHHHHHHHTTCGGGTTSBGGGCCHHHHH
T ss_pred EECCcCCHHHHhceEEEECCCCccCCCCcHHHHHHHhh---ccCCc----HHHHHHHHHHcCChhHhcCChhhCCHHHHH
Confidence 88632 3456778999999999999999999998752 11111 567899999999987665 45699998
Q ss_pred C-------------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeE
Q 006897 210 R-------------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSV 264 (627)
Q Consensus 210 r-------------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~i 264 (627)
| ||+|||+.++..+.+.|++++++ |+|||++|||++ ++.++||++++|++|++
T Consensus 134 rv~lAraL~~~p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~-g~tviivtHd~~-~~~~~~d~v~~l~~G~i 211 (249)
T 2qi9_C 134 RVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQ-GLAIVMSSHDLN-HTLRHAHRAWLLKGGKM 211 (249)
T ss_dssp HHHHHHHHHHHCTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEECSCHH-HHHHHCSEEEEEETTEE
T ss_pred HHHHHHHHHcCCCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCHH-HHHHhCCEEEEEECCEE
Confidence 8 89999999999999999999765 899999999998 47899999999999999
Q ss_pred EeeCCHHHH
Q 006897 265 VHYGSLELL 273 (627)
Q Consensus 265 v~~G~~~~~ 273 (627)
++.|+++++
T Consensus 212 ~~~g~~~~~ 220 (249)
T 2qi9_C 212 LASGRREEV 220 (249)
T ss_dssp EEEEEHHHH
T ss_pred EEeCCHHHH
Confidence 999998776
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-36 Score=306.14 Aligned_cols=191 Identities=25% Similarity=0.397 Sum_probs=160.8
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
+|+++||+++|+ +++.+|+||||+|++||+++|+||||||||||+|+|+|+++|++ |+|.++|
T Consensus 1 ml~~~~l~~~y~--------------~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~---G~i~~~g 63 (243)
T 1mv5_A 1 MLSARHVDFAYD--------------DSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTA---GEITIDG 63 (243)
T ss_dssp CEEEEEEEECSS--------------SSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSB---SCEEETT
T ss_pred CEEEEEEEEEeC--------------CCCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCC---cEEEECC
Confidence 479999999993 12458999999999999999999999999999999999999864 9999999
Q ss_pred ccCCC--hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccC------------
Q 006897 136 HQIKK--PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAG------------ 201 (627)
Q Consensus 136 ~~~~~--~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~------------ 201 (627)
+++.. ...+++.+|||||++.+++ .||+||+.++.. .... +++++++++.+++.+..+
T Consensus 64 ~~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~---~~~~----~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~ 135 (243)
T 1mv5_A 64 QPIDNISLENWRSQIGFVSQDSAIMA-GTIRENLTYGLE---GDYT----DEDLWQVLDLAFARSFVENMPDQLNTEVGE 135 (243)
T ss_dssp EESTTTSCSCCTTTCCEECCSSCCCC-EEHHHHTTSCTT---SCSC----HHHHHHHHHHHTCTTTTTSSTTGGGCEEST
T ss_pred EEhhhCCHHHHHhhEEEEcCCCcccc-ccHHHHHhhhcc---CCCC----HHHHHHHHHHhChHHHHHhCccchhchhcc
Confidence 88643 2456778999999998887 499999987521 1111 345788889998876543
Q ss_pred ---CcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeec
Q 006897 202 ---SFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILS 260 (627)
Q Consensus 202 ---~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~ 260 (627)
+++|||+|| ||+|||+.++..+++.|++++ + |+|||++|||++. + +.|||+++|+
T Consensus 136 ~~~~LSgGq~qrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~-~~tvi~vtH~~~~-~-~~~d~v~~l~ 211 (243)
T 1mv5_A 136 RGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLM-K-GRTTLVIAHRLST-I-VDADKIYFIE 211 (243)
T ss_dssp TSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH-T-TSEEEEECCSHHH-H-HHCSEEEEEE
T ss_pred CcCcCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHhc-C-CCEEEEEeCChHH-H-HhCCEEEEEE
Confidence 567999999 999999999999999999996 4 8999999999973 5 5699999999
Q ss_pred CCeEEeeCCHHHHHH
Q 006897 261 RGSVVHYGSLELLEE 275 (627)
Q Consensus 261 ~G~iv~~G~~~~~~~ 275 (627)
+|++++.|+++++.+
T Consensus 212 ~G~i~~~g~~~~~~~ 226 (243)
T 1mv5_A 212 KGQITGSGKHNELVA 226 (243)
T ss_dssp TTEECCCSCHHHHHH
T ss_pred CCEEEEeCCHHHHHh
Confidence 999999999987753
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-35 Score=298.62 Aligned_cols=191 Identities=21% Similarity=0.365 Sum_probs=157.7
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
+|+++||+++|+.+ ..+.+|+||||++++||+++|+||||||||||+|+|+|++++ . |+|.++|
T Consensus 17 ~l~i~~l~~~y~~~------------~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~---G~I~i~g 80 (260)
T 2ghi_A 17 NIEFSDVNFSYPKQ------------TNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-E---GDIKIGG 80 (260)
T ss_dssp CEEEEEEEECCTTC------------CSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-E---EEEEETT
T ss_pred eEEEEEEEEEeCCC------------CcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC-C---eEEEECC
Confidence 69999999999421 124599999999999999999999999999999999999875 2 9999999
Q ss_pred ccCCC--hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccc--------------
Q 006897 136 HQIKK--PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHV-------------- 199 (627)
Q Consensus 136 ~~~~~--~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-------------- 199 (627)
+++.. ...+++.+|||||++.+++ .||+||+.++. .... ++++.++++.+++.+.
T Consensus 81 ~~i~~~~~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~----~~~~----~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~ 151 (260)
T 2ghi_A 81 KNVNKYNRNSIRSIIGIVPQDTILFN-ETIKYNILYGK----LDAT----DEEVIKATKSAQLYDFIEALPKKWDTIVGN 151 (260)
T ss_dssp EEGGGBCHHHHHTTEEEECSSCCCCS-EEHHHHHHTTC----TTCC----HHHHHHHHHHTTCHHHHHTSTTGGGCEESS
T ss_pred EEhhhcCHHHHhccEEEEcCCCcccc-cCHHHHHhccC----CCCC----HHHHHHHHHHhCCHHHHHhccccccccccC
Confidence 88632 3456788999999999886 59999998752 1111 2345667777776432
Q ss_pred -cCCcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeec
Q 006897 200 -AGSFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILS 260 (627)
Q Consensus 200 -~~~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~ 260 (627)
..+++|||+|| ||+|||+.++..+++.|++++ + |+|||++|||++. + +.||++++|+
T Consensus 152 ~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~-~-~~tviivtH~~~~-~-~~~d~i~~l~ 227 (260)
T 2ghi_A 152 KGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLR-K-NRTLIIIAHRLST-I-SSAESIILLN 227 (260)
T ss_dssp SSBCCCHHHHHHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHHT-T-TSEEEEECSSGGG-S-TTCSEEEEEE
T ss_pred CcCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHhc-C-CCEEEEEcCCHHH-H-HhCCEEEEEE
Confidence 24677999999 999999999999999999985 3 7999999999984 5 4699999999
Q ss_pred CCeEEeeCCHHHHHH
Q 006897 261 RGSVVHYGSLELLEE 275 (627)
Q Consensus 261 ~G~iv~~G~~~~~~~ 275 (627)
+|++++.|+++++..
T Consensus 228 ~G~i~~~g~~~~l~~ 242 (260)
T 2ghi_A 228 KGKIVEKGTHKDLLK 242 (260)
T ss_dssp TTEEEEEECHHHHHH
T ss_pred CCEEEEECCHHHHHh
Confidence 999999999988754
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-35 Score=289.71 Aligned_cols=181 Identities=18% Similarity=0.304 Sum_probs=153.4
Q ss_pred ceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEEC
Q 006897 55 CKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVN 134 (627)
Q Consensus 55 ~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~ 134 (627)
.+|+++||+++|+ + ++|+|+||++++||+++|+||||||||||||+|+|+++|++ |+|.++
T Consensus 9 ~~l~~~~ls~~y~---------------~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~---G~I~~~ 69 (214)
T 1sgw_A 9 SKLEIRDLSVGYD---------------K-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLK---GEIIYN 69 (214)
T ss_dssp CEEEEEEEEEESS---------------S-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSE---EEEEET
T ss_pred ceEEEEEEEEEeC---------------C-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCC---eEEEEC
Confidence 4799999999993 3 59999999999999999999999999999999999999863 999999
Q ss_pred CccCCChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccc---cCCcCCccccC-
Q 006897 135 CHQIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHV---AGSFVGDEENR- 210 (627)
Q Consensus 135 g~~~~~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~---~~~~~gGe~qr- 210 (627)
|+++. ..++.+|||||++.+++.+||+||+.++...+ +. +.+ +++++++++.+||++. ..+++|||+||
T Consensus 70 g~~~~---~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~--~~-~~~-~~~~~~~l~~~gl~~~~~~~~~LSgGqkqrv 142 (214)
T 1sgw_A 70 GVPIT---KVKGKIFFLPEEIIVPRKISVEDYLKAVASLY--GV-KVN-KNEIMDALESVEVLDLKKKLGELSQGTIRRV 142 (214)
T ss_dssp TEEGG---GGGGGEEEECSSCCCCTTSBHHHHHHHHHHHT--TC-CCC-HHHHHHHHHHTTCCCTTSBGGGSCHHHHHHH
T ss_pred CEEhh---hhcCcEEEEeCCCcCCCCCCHHHHHHHHHHhc--CC-chH-HHHHHHHHHHcCCCcCCCChhhCCHHHHHHH
Confidence 98853 35778999999999999999999999975432 11 122 5678999999999765 22456999999
Q ss_pred -----------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeE
Q 006897 211 -----------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSV 264 (627)
Q Consensus 211 -----------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~i 264 (627)
||+|||+.++..+++.|++++++ |+|||++|||++ ++..+||+++++. |+|
T Consensus 143 ~laraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~-g~tiiivtHd~~-~~~~~~d~v~~~~-~~~ 210 (214)
T 1sgw_A 143 QLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKE-KGIVIISSREEL-SYCDVNENLHKYS-TKI 210 (214)
T ss_dssp HHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHH-HSEEEEEESSCC-TTSSEEEEGGGGB-C--
T ss_pred HHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCHH-HHHHhCCEEEEeC-Ccc
Confidence 99999999999999999999765 899999999998 4788899988664 444
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-35 Score=296.59 Aligned_cols=189 Identities=17% Similarity=0.265 Sum_probs=159.1
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
+|+++||+++|+.+ ...+.+|+|+||+++ ||+++|+||||||||||+|+|+|++ |++ |+|.++|
T Consensus 1 ml~~~~l~~~y~~~-----------~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~---G~I~~~g 64 (263)
T 2pjz_A 1 MIQLKNVGITLSGK-----------GYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYS---GNIFING 64 (263)
T ss_dssp CEEEEEEEEEEEEE-----------TTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCE---EEEEETT
T ss_pred CEEEEEEEEEeCCC-----------CccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCC---cEEEECC
Confidence 48999999999421 011469999999999 9999999999999999999999999 863 9999999
Q ss_pred ccCCChhhhcccEE-EEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCc-cccC----CcCCcccc
Q 006897 136 HQIKKPAQLRKICG-FVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLT-HVAG----SFVGDEEN 209 (627)
Q Consensus 136 ~~~~~~~~~r~~ig-~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~----~~~gGe~q 209 (627)
+++..... ++.+| ||||++.+ .+||+||+.++.... . ..+++++++++.+||+ +..+ +++|||||
T Consensus 65 ~~~~~~~~-~~~i~~~v~Q~~~l--~~tv~enl~~~~~~~--~----~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkq 135 (263)
T 2pjz_A 65 MEVRKIRN-YIRYSTNLPEAYEI--GVTVNDIVYLYEELK--G----LDRDLFLEMLKALKLGEEILRRKLYKLSAGQSV 135 (263)
T ss_dssp EEGGGCSC-CTTEEECCGGGSCT--TSBHHHHHHHHHHHT--C----CCHHHHHHHHHHTTCCGGGGGSBGGGSCHHHHH
T ss_pred EECcchHH-hhheEEEeCCCCcc--CCcHHHHHHHhhhhc--c----hHHHHHHHHHHHcCCChhHhcCChhhCCHHHHH
Confidence 87532222 67899 99999887 789999999875432 1 1245688999999998 6655 45699999
Q ss_pred C------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhh-hheeecCCeEEeeCCH
Q 006897 210 R------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYIS-KFLILSRGSVVHYGSL 270 (627)
Q Consensus 210 r------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D-~i~vL~~G~iv~~G~~ 270 (627)
| ||+|||+.++..+++.|++++ . |||++|||++. +.++|| ++++|++|++++.|++
T Consensus 136 Rv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~---~-tviivtHd~~~-~~~~~d~~i~~l~~G~i~~~g~~ 210 (263)
T 2pjz_A 136 LVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYG---K-EGILVTHELDM-LNLYKEYKAYFLVGNRLQGPISV 210 (263)
T ss_dssp HHHHHHHHHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSC---S-EEEEEESCGGG-GGGCTTSEEEEEETTEEEEEEEH
T ss_pred HHHHHHHHHhCCCEEEEECCccccCHHHHHHHHHHHHHhc---C-cEEEEEcCHHH-HHHhcCceEEEEECCEEEEecCH
Confidence 9 999999999999999999873 2 99999999984 778999 9999999999999999
Q ss_pred HHHH
Q 006897 271 ELLE 274 (627)
Q Consensus 271 ~~~~ 274 (627)
+++.
T Consensus 211 ~~l~ 214 (263)
T 2pjz_A 211 SELL 214 (263)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8775
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-35 Score=313.88 Aligned_cols=190 Identities=21% Similarity=0.272 Sum_probs=161.3
Q ss_pred ceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEEC
Q 006897 55 CKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVN 134 (627)
Q Consensus 55 ~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~ 134 (627)
..|+++||+++|+. +++.+|+||||+|++||+++|+||||||||||||+|+|+++ + +|+|.++
T Consensus 18 ~~i~~~~l~~~y~~-------------~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~---~G~I~i~ 80 (390)
T 3gd7_A 18 GQMTVKDLTAKYTE-------------GGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-T---EGEIQID 80 (390)
T ss_dssp CCEEEEEEEEESSS-------------SSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-E---EEEEEES
T ss_pred CeEEEEEEEEEecC-------------CCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-C---CeEEEEC
Confidence 36999999999942 23469999999999999999999999999999999999986 4 3999999
Q ss_pred CccCCC--hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccC----C------
Q 006897 135 CHQIKK--PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAG----S------ 202 (627)
Q Consensus 135 g~~~~~--~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~----~------ 202 (627)
|+++.. ...+++.+|||||++.+|+ +||+||+.+.. . ..+++++++++.++|.+..+ .
T Consensus 81 G~~i~~~~~~~~rr~ig~v~Q~~~lf~-~tv~enl~~~~-----~----~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~ 150 (390)
T 3gd7_A 81 GVSWDSITLEQWRKAFGVIPQKVFIFS-GTFRKNLDPNA-----A----HSDQEIWKVADEVGLRSVIEQFPGKLDFVLV 150 (390)
T ss_dssp SCBTTSSCHHHHHHTEEEESCCCCCCS-EEHHHHHCTTC-----C----SCHHHHHHHHHHTTCHHHHTTSTTGGGCEEC
T ss_pred CEECCcCChHHHhCCEEEEcCCcccCc-cCHHHHhhhcc-----c----cCHHHHHHHHHHhCCHHHHhhcccccccccc
Confidence 998743 3456788999999999997 59999996421 1 12456888999999976543 2
Q ss_pred -----cCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheee
Q 006897 203 -----FVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLIL 259 (627)
Q Consensus 203 -----~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL 259 (627)
++|||||| ||++||+..+.++.+.|+++. .++|+|++|||++ ....||||++|
T Consensus 151 ~~g~~LSGGqrQRvalARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~--~~~tvi~vtHd~e--~~~~aDri~vl 226 (390)
T 3gd7_A 151 DGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAF--ADCTVILCEARIE--AMLECDQFLVI 226 (390)
T ss_dssp TTTTTSCHHHHHHHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTT--TTSCEEEECSSSG--GGTTCSEEEEE
T ss_pred cccccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh--CCCEEEEEEcCHH--HHHhCCEEEEE
Confidence 78999999 999999999999999999863 4799999999986 35679999999
Q ss_pred cCCeEEeeCCHHHHHH
Q 006897 260 SRGSVVHYGSLELLEE 275 (627)
Q Consensus 260 ~~G~iv~~G~~~~~~~ 275 (627)
++|++++.|+++++.+
T Consensus 227 ~~G~i~~~g~~~el~~ 242 (390)
T 3gd7_A 227 EENKVRQYDSILELYH 242 (390)
T ss_dssp ETTEEEEESSHHHHHH
T ss_pred ECCEEEEECCHHHHHh
Confidence 9999999999998854
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-33 Score=319.02 Aligned_cols=192 Identities=23% Similarity=0.375 Sum_probs=162.6
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
.|+++||+++|++ +++++|+|+||++++||++||+||||||||||+|+|+|+++|++ |+|.++|
T Consensus 341 ~i~~~~v~~~y~~-------------~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~---G~i~~~g 404 (582)
T 3b5x_A 341 EVDVKDVTFTYQG-------------KEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDS---GSICLDG 404 (582)
T ss_pred eEEEEEEEEEcCC-------------CCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCC---CEEEECC
Confidence 6999999999942 12469999999999999999999999999999999999999864 9999999
Q ss_pred ccCCC--hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCcccc-------------
Q 006897 136 HQIKK--PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVA------------- 200 (627)
Q Consensus 136 ~~~~~--~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~------------- 200 (627)
+++.+ ..++|+++|||||++.+|+. ||+||+.++.. +.. .+++++++++.+|+++..
T Consensus 405 ~~~~~~~~~~~~~~i~~v~Q~~~l~~~-tv~eni~~~~~---~~~----~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~ 476 (582)
T 3b5x_A 405 HDVRDYKLTNLRRHFALVSQNVHLFND-TIANNIAYAAE---GEY----TREQIEQAARQAHAMEFIENMPQGLDTVIGE 476 (582)
T ss_pred EEhhhCCHHHHhcCeEEEcCCCccccc-cHHHHHhccCC---CCC----CHHHHHHHHHHCCCHHHHHhCcccccchhcC
Confidence 98632 45678899999999999975 99999998631 111 235577888888776432
Q ss_pred --CCcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeec
Q 006897 201 --GSFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILS 260 (627)
Q Consensus 201 --~~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~ 260 (627)
.+++|||||| ||++||+.+++.+.+.|+++. .|+|+|++||+++. + +.|||+++|+
T Consensus 477 ~~~~LSgGq~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~~~~-~-~~~d~i~~l~ 552 (582)
T 3b5x_A 477 NGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQ--KNKTVLVIAHRLST-I-EQADEILVVD 552 (582)
T ss_pred CCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHc--CCCEEEEEecCHHH-H-HhCCEEEEEE
Confidence 3567999999 999999999999999999985 38999999999973 4 5799999999
Q ss_pred CCeEEeeCCHHHHHH
Q 006897 261 RGSVVHYGSLELLEE 275 (627)
Q Consensus 261 ~G~iv~~G~~~~~~~ 275 (627)
+|++++.|+++++.+
T Consensus 553 ~G~i~~~g~~~~l~~ 567 (582)
T 3b5x_A 553 EGEIIERGRHADLLA 567 (582)
T ss_pred CCEEEEECCHHHHHh
Confidence 999999999988753
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.8e-34 Score=320.81 Aligned_cols=191 Identities=26% Similarity=0.390 Sum_probs=160.5
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
.|+++||+++|++ +++++|+|+||++++||++||+||||||||||+|+|+|+++|++ |+|.++|
T Consensus 339 ~i~~~~v~~~y~~-------------~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~---G~i~~~g 402 (578)
T 4a82_A 339 RIDIDHVSFQYND-------------NEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTS---GQILIDG 402 (578)
T ss_dssp CEEEEEEEECSCS-------------SSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSE---EEEEETT
T ss_pred eEEEEEEEEEcCC-------------CCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCC---cEEEECC
Confidence 5999999999942 23469999999999999999999999999999999999999864 9999999
Q ss_pred ccCCC--hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccc--------------
Q 006897 136 HQIKK--PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHV-------------- 199 (627)
Q Consensus 136 ~~~~~--~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-------------- 199 (627)
+++.+ ..++|+++|||+|++.+|+. ||+||+.++. +..+ ++++.++++..++.+.
T Consensus 403 ~~~~~~~~~~~r~~i~~v~Q~~~l~~~-tv~eni~~~~----~~~~----~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~ 473 (578)
T 4a82_A 403 HNIKDFLTGSLRNQIGLVQQDNILFSD-TVKENILLGR----PTAT----DEEVVEAAKMANAHDFIMNLPQGYDTEVGE 473 (578)
T ss_dssp EEGGGSCHHHHHHTEEEECSSCCCCSS-BHHHHHGGGC----SSCC----HHHHHHHHHHTTCHHHHHTSTTGGGCBCCG
T ss_pred EEhhhCCHHHHhhheEEEeCCCccCcc-cHHHHHhcCC----CCCC----HHHHHHHHHHhCcHHHHHhCcchhhhhhcc
Confidence 98743 45678899999999999986 9999998852 1112 2446666666665432
Q ss_pred -cCCcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeec
Q 006897 200 -AGSFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILS 260 (627)
Q Consensus 200 -~~~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~ 260 (627)
..+++|||||| |||+||+.++..+.+.++++. .++|+|++|||++. + +.|||+++|+
T Consensus 474 ~g~~LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~-~-~~~d~i~~l~ 549 (578)
T 4a82_A 474 RGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLS--KDRTTLIVAHRLST-I-THADKIVVIE 549 (578)
T ss_dssp GGTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHT--TTSEEEEECSSGGG-T-TTCSEEEEEE
T ss_pred CCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHc--CCCEEEEEecCHHH-H-HcCCEEEEEE
Confidence 13567999999 999999999999999999984 37899999999984 4 5699999999
Q ss_pred CCeEEeeCCHHHHHH
Q 006897 261 RGSVVHYGSLELLEE 275 (627)
Q Consensus 261 ~G~iv~~G~~~~~~~ 275 (627)
+|++++.|+++++.+
T Consensus 550 ~G~i~~~g~~~el~~ 564 (578)
T 4a82_A 550 NGHIVETGTHRELIA 564 (578)
T ss_dssp TTEEEEEECHHHHHH
T ss_pred CCEEEEECCHHHHHh
Confidence 999999999998854
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.8e-34 Score=321.09 Aligned_cols=191 Identities=22% Similarity=0.348 Sum_probs=158.3
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
.|+++||+++|++ +++++|+|+||++++||++||+||||||||||+|+|+|+++|++ |+|.++|
T Consensus 341 ~i~~~~v~~~y~~-------------~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~---G~i~i~g 404 (587)
T 3qf4_A 341 SVSFENVEFRYFE-------------NTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPER---GRVEVDE 404 (587)
T ss_dssp CEEEEEEEECSSS-------------SSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSE---EEEEESS
T ss_pred cEEEEEEEEEcCC-------------CCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCC---cEEEECC
Confidence 6999999999942 23469999999999999999999999999999999999999864 9999999
Q ss_pred ccCCC--hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCC-----------ccc---
Q 006897 136 HQIKK--PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGL-----------THV--- 199 (627)
Q Consensus 136 ~~~~~--~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL-----------~~~--- 199 (627)
+++.+ ..++|+++|||||++.+|+. ||+||+.++. +..+. +++.++++..++ +..
T Consensus 405 ~~i~~~~~~~~r~~i~~v~Q~~~lf~~-tv~eni~~~~----~~~~~----~~~~~~~~~~~~~~~i~~l~~g~~~~~~~ 475 (587)
T 3qf4_A 405 LDVRTVKLKDLRGHISAVPQETVLFSG-TIKENLKWGR----EDATD----DEIVEAAKIAQIHDFIISLPEGYDSRVER 475 (587)
T ss_dssp SBGGGBCHHHHHHHEEEECSSCCCCSE-EHHHHHTTTC----SSCCH----HHHHHHHHHTTCHHHHHTSSSGGGCEECS
T ss_pred EEcccCCHHHHHhheEEECCCCcCcCc-cHHHHHhccC----CCCCH----HHHHHHHHHhCcHHHHHhcccchhhHhcC
Confidence 98743 45678899999999999976 9999998752 11122 233444444443 322
Q ss_pred -cCCcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeec
Q 006897 200 -AGSFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILS 260 (627)
Q Consensus 200 -~~~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~ 260 (627)
..+++|||||| ||++||+.+++++.+.|+++. .|+|+|++||+++. + +.||||++|+
T Consensus 476 ~~~~LSgGqrQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~-~-~~~d~i~vl~ 551 (587)
T 3qf4_A 476 GGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYT--KGCTTFIITQKIPT-A-LLADKILVLH 551 (587)
T ss_dssp SSCSSCHHHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHS--TTCEEEEEESCHHH-H-TTSSEEEEEE
T ss_pred CCCCcCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhC--CCCEEEEEecChHH-H-HhCCEEEEEE
Confidence 24567999999 999999999999999999974 48999999999983 4 6899999999
Q ss_pred CCeEEeeCCHHHHHH
Q 006897 261 RGSVVHYGSLELLEE 275 (627)
Q Consensus 261 ~G~iv~~G~~~~~~~ 275 (627)
+|++++.|+++++.+
T Consensus 552 ~G~i~~~g~~~el~~ 566 (587)
T 3qf4_A 552 EGKVAGFGTHKELLE 566 (587)
T ss_dssp TTEEEEEECHHHHHH
T ss_pred CCEEEEECCHHHHHh
Confidence 999999999998864
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-33 Score=319.22 Aligned_cols=192 Identities=21% Similarity=0.336 Sum_probs=162.4
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
.|+++||+++|++ +++++|+|+||++++||++||+||||||||||+|+|+|+++|++ |+|.++|
T Consensus 341 ~i~~~~v~~~y~~-------------~~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~---G~i~~~g 404 (582)
T 3b60_A 341 DLEFRNVTFTYPG-------------REVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDE---GHILMDG 404 (582)
T ss_dssp CEEEEEEEECSSS-------------SSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSE---EEEEETT
T ss_pred cEEEEEEEEEcCC-------------CCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCC---CeEEECC
Confidence 6999999999942 12469999999999999999999999999999999999999864 9999999
Q ss_pred ccCCC--hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCcccc-------------
Q 006897 136 HQIKK--PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVA------------- 200 (627)
Q Consensus 136 ~~~~~--~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~------------- 200 (627)
+++.+ ..++|+++|||||++.+++. ||+||+.++.. +..+ +++++++++.+++++..
T Consensus 405 ~~~~~~~~~~~~~~i~~v~Q~~~l~~~-tv~eni~~~~~---~~~~----~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~ 476 (582)
T 3b60_A 405 HDLREYTLASLRNQVALVSQNVHLFND-TVANNIAYART---EEYS----REQIEEAARMAYAMDFINKMDNGLDTIIGE 476 (582)
T ss_dssp EETTTBCHHHHHHTEEEECSSCCCCSS-BHHHHHHTTTT---SCCC----HHHHHHHHHTTTCHHHHHHSTTGGGSBCCT
T ss_pred EEccccCHHHHHhhCeEEccCCcCCCC-CHHHHHhccCC---CCCC----HHHHHHHHHHcCCHHHHHhccccccccccC
Confidence 98743 35678899999999999985 99999998521 1112 35577788877775432
Q ss_pred --CCcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeec
Q 006897 201 --GSFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILS 260 (627)
Q Consensus 201 --~~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~ 260 (627)
.+++|||||| ||++||+.++.++.+.|+++. + |+|+|++||+++. + +.|||+++|+
T Consensus 477 ~~~~LSgGq~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~-~~tvi~itH~~~~-~-~~~d~i~~l~ 552 (582)
T 3b60_A 477 NGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQ-K-NRTSLVIAHRLST-I-EQADEIVVVE 552 (582)
T ss_dssp TSCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHH-T-TSEEEEECSCGGG-T-TTCSEEEEEE
T ss_pred CCCCCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHh-C-CCEEEEEeccHHH-H-HhCCEEEEEE
Confidence 3567999999 999999999999999999985 3 8999999999984 4 5799999999
Q ss_pred CCeEEeeCCHHHHHH
Q 006897 261 RGSVVHYGSLELLEE 275 (627)
Q Consensus 261 ~G~iv~~G~~~~~~~ 275 (627)
+|++++.|+++++.+
T Consensus 553 ~G~i~~~g~~~~l~~ 567 (582)
T 3b60_A 553 DGIIVERGTHSELLA 567 (582)
T ss_dssp TTEEEEEECHHHHHH
T ss_pred CCEEEEecCHHHHHH
Confidence 999999999998864
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-33 Score=282.03 Aligned_cols=178 Identities=25% Similarity=0.397 Sum_probs=145.0
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
+|+++||+++|+. +++++|+|+||++++||+++|+||||||||||+|+|+|+++|++ |+|.++|
T Consensus 6 ~l~~~~l~~~y~~-------------~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~---G~i~~~g 69 (229)
T 2pze_A 6 EVVMENVTAFWEE-------------GGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSE---GKIKHSG 69 (229)
T ss_dssp EEEEEEEEECSST-------------TSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSE---EEEEECS
T ss_pred eEEEEEEEEEeCC-------------CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCc---cEEEECC
Confidence 7999999999942 13469999999999999999999999999999999999999864 9999987
Q ss_pred ccCCChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccc---------------c
Q 006897 136 HQIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHV---------------A 200 (627)
Q Consensus 136 ~~~~~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~---------------~ 200 (627)
.+||++|++.+++. ||+||+.++.. ... .+.+++++.+++.+. .
T Consensus 70 -----------~i~~v~q~~~~~~~-tv~enl~~~~~-----~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 128 (229)
T 2pze_A 70 -----------RISFCSQFSWIMPG-TIKENIIFGVS-----YDE----YRYRSVIKACQLEEDISKFAEKDNIVLGEGG 128 (229)
T ss_dssp -----------CEEEECSSCCCCSB-CHHHHHHTTSC-----CCH----HHHHHHHHHTTCHHHHTTSTTGGGSCBCTTC
T ss_pred -----------EEEEEecCCcccCC-CHHHHhhccCC-----cCh----HHHHHHHHHhCcHHHHHhCcccccccccCCC
Confidence 38999999998885 99999987521 111 123334444444321 2
Q ss_pred CCcCCccccC------------------CCCCCCHHHHHHHHHH-HHHHHHcCCCEEEEEccCccHHHHHHhhhheeecC
Q 006897 201 GSFVGDEENR------------------GISGLDSTSALQVIEL-LASMAKAKQRTVVLSIHQPSYRILQYISKFLILSR 261 (627)
Q Consensus 201 ~~~~gGe~qr------------------PtsgLD~~~~~~i~~~-L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~ 261 (627)
.+++|||||| ||+|||+.++..+++. ++++. .|+|||++|||++. + +.||++++|++
T Consensus 129 ~~LSgGqkqrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~--~~~tvi~vtH~~~~-~-~~~d~v~~l~~ 204 (229)
T 2pze_A 129 ITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM--ANKTRILVTSKMEH-L-KKADKILILHE 204 (229)
T ss_dssp TTSCHHHHHHHHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCT--TTSEEEEECCCHHH-H-HHCSEEEEEET
T ss_pred CcCCHHHHHHHHHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhh--CCCEEEEEcCChHH-H-HhCCEEEEEEC
Confidence 4677999999 9999999999999997 45653 37899999999873 5 56999999999
Q ss_pred CeEEeeCCHHHHH
Q 006897 262 GSVVHYGSLELLE 274 (627)
Q Consensus 262 G~iv~~G~~~~~~ 274 (627)
|++++.|+++++.
T Consensus 205 G~i~~~g~~~~~~ 217 (229)
T 2pze_A 205 GSSYFYGTFSELQ 217 (229)
T ss_dssp TEEEEEECHHHHH
T ss_pred CEEEEECCHHHHH
Confidence 9999999988764
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-33 Score=320.03 Aligned_cols=190 Identities=20% Similarity=0.369 Sum_probs=159.1
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
.|+++||+++|++ ++++|+|+||++++||++||+||||||||||+|+|+|+++|++ |+|.++|
T Consensus 354 ~i~~~~v~~~y~~--------------~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~---G~i~~~g 416 (598)
T 3qf4_B 354 EIEFKNVWFSYDK--------------KKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDR---GQILVDG 416 (598)
T ss_dssp CEEEEEEECCSSS--------------SSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSE---EEEEETT
T ss_pred eEEEEEEEEECCC--------------CCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCC---eEEEECC
Confidence 5999999999942 2459999999999999999999999999999999999999864 9999999
Q ss_pred ccCCC--hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCcccc-------------
Q 006897 136 HQIKK--PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVA------------- 200 (627)
Q Consensus 136 ~~~~~--~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~------------- 200 (627)
+++.+ ...+|+++|||||++.+|+. ||+||+.++. +..++ +++.++++.+++++..
T Consensus 417 ~~i~~~~~~~~r~~i~~v~Q~~~lf~~-tv~eni~~~~----~~~~~----~~~~~~~~~~~~~~~~~~~~~g~~t~~~~ 487 (598)
T 3qf4_B 417 IDIRKIKRSSLRSSIGIVLQDTILFST-TVKENLKYGN----PGATD----EEIKEAAKLTHSDHFIKHLPEGYETVLTD 487 (598)
T ss_dssp EEGGGSCHHHHHHHEEEECTTCCCCSS-BHHHHHHSSS----TTCCT----THHHHHTTTTTCHHHHHTSTTGGGCBCHH
T ss_pred EEhhhCCHHHHHhceEEEeCCCccccc-cHHHHHhcCC----CCCCH----HHHHHHHHHhCCHHHHHhccccccchhcC
Confidence 98743 45678899999999999975 9999998752 11122 3355566555554321
Q ss_pred --CCcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeec
Q 006897 201 --GSFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILS 260 (627)
Q Consensus 201 --~~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~ 260 (627)
.+++|||||| |||+||+.++..+.+.|+++. .|+|+|++||+++. + +.||+|++|+
T Consensus 488 ~g~~LSgGq~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~-~-~~~d~i~~l~ 563 (598)
T 3qf4_B 488 NGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLM--EGKTSIIIAHRLNT-I-KNADLIIVLR 563 (598)
T ss_dssp HHTTSCHHHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHH--TTSEEEEESCCTTH-H-HHCSEEEEEC
T ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHc--CCCEEEEEecCHHH-H-HcCCEEEEEE
Confidence 3567999999 999999999999999999985 38999999999984 5 5599999999
Q ss_pred CCeEEeeCCHHHHHH
Q 006897 261 RGSVVHYGSLELLEE 275 (627)
Q Consensus 261 ~G~iv~~G~~~~~~~ 275 (627)
+|++++.|+++++.+
T Consensus 564 ~G~i~~~g~~~~l~~ 578 (598)
T 3qf4_B 564 DGEIVEMGKHDELIQ 578 (598)
T ss_dssp SSSEEECSCHHHHHH
T ss_pred CCEEEEECCHHHHHh
Confidence 999999999998764
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-33 Score=280.87 Aligned_cols=182 Identities=23% Similarity=0.398 Sum_probs=144.8
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
+|+++||+++|+. .++.+|+|+||+|++||+++|+||||||||||+|+|+|+++|+ .|+|.++|
T Consensus 3 ~l~~~~l~~~y~~-------------~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g 66 (237)
T 2cbz_A 3 SITVRNATFTWAR-------------SDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKV---EGHVAIKG 66 (237)
T ss_dssp CEEEEEEEEESCT-------------TSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEE---EEEEEECS
T ss_pred eEEEEEEEEEeCC-------------CCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECC
Confidence 5899999999941 1246999999999999999999999999999999999999985 49999988
Q ss_pred ccCCChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHH---HHHHcCC---------ccccCCc
Q 006897 136 HQIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVES---LMDELGL---------THVAGSF 203 (627)
Q Consensus 136 ~~~~~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~---~l~~lgL---------~~~~~~~ 203 (627)
.+|||+|++.+ +.+||+||+.++.. . .. +..+++.+ +++.+++ .....++
T Consensus 67 -----------~i~~v~Q~~~~-~~~tv~enl~~~~~--~---~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L 128 (237)
T 2cbz_A 67 -----------SVAYVPQQAWI-QNDSLRENILFGCQ--L---EE-PYYRSVIQACALLPDLEILPSGDRTEIGEKGVNL 128 (237)
T ss_dssp -----------CEEEECSSCCC-CSEEHHHHHHTTSC--C---CT-THHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCC
T ss_pred -----------EEEEEcCCCcC-CCcCHHHHhhCccc--c---CH-HHHHHHHHHHhhHHHHHhccccccccccCCCCCC
Confidence 38999999875 46899999988531 1 11 11122222 2333433 1233567
Q ss_pred CCccccC------------------CCCCCCHHHHHHHHHHHH---HHHHcCCCEEEEEccCccHHHHHHhhhheeecCC
Q 006897 204 VGDEENR------------------GISGLDSTSALQVIELLA---SMAKAKQRTVVLSIHQPSYRILQYISKFLILSRG 262 (627)
Q Consensus 204 ~gGe~qr------------------PtsgLD~~~~~~i~~~L~---~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G 262 (627)
+|||+|| ||+|||+.++..+++.|+ ++. .|+|||++|||++. + +.||++++|++|
T Consensus 129 SgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~--~~~tviivtH~~~~-~-~~~d~v~~l~~G 204 (237)
T 2cbz_A 129 SGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGML--KNKTRILVTHSMSY-L-PQVDVIIVMSGG 204 (237)
T ss_dssp CHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTT--TTSEEEEECSCSTT-G-GGSSEEEEEETT
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhc--CCCEEEEEecChHH-H-HhCCEEEEEeCC
Confidence 7999999 999999999999999995 442 48999999999984 4 579999999999
Q ss_pred eEEeeCCHHHHHH
Q 006897 263 SVVHYGSLELLEE 275 (627)
Q Consensus 263 ~iv~~G~~~~~~~ 275 (627)
++++.|+++++.+
T Consensus 205 ~i~~~g~~~~~~~ 217 (237)
T 2cbz_A 205 KISEMGSYQELLA 217 (237)
T ss_dssp EEEEEECHHHHHH
T ss_pred EEEEeCCHHHHhh
Confidence 9999999988754
|
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.98 E-value=3.9e-33 Score=340.64 Aligned_cols=194 Identities=24% Similarity=0.387 Sum_probs=166.5
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
.|+++||+++|+++ .+.+||+||||+|++||.+||+||||||||||+++|.|++.|++ |+|.+||
T Consensus 1076 ~I~f~nVsf~Y~~~------------~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~---G~I~iDG 1140 (1321)
T 4f4c_A 1076 KVIFKNVRFAYPER------------PEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLG---GEIFIDG 1140 (1321)
T ss_dssp CEEEEEEEECCTTS------------CSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCSS---SEEEETT
T ss_pred eEEEEEEEEeCCCC------------CCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCCC---CEEEECC
Confidence 59999999999533 23469999999999999999999999999999999999999864 9999999
Q ss_pred ccCCC--hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCcccc-------------
Q 006897 136 HQIKK--PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVA------------- 200 (627)
Q Consensus 136 ~~~~~--~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~------------- 200 (627)
.|+.+ .+.+|++++||||++.+|+. |++|||.|+.. +.+..++++.++++..++.+..
T Consensus 1141 ~di~~i~~~~lR~~i~~V~Qdp~LF~g-TIreNI~~gld------~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge 1213 (1321)
T 4f4c_A 1141 SEIKTLNPEHTRSQIAIVSQEPTLFDC-SIAENIIYGLD------PSSVTMAQVEEAARLANIHNFIAELPEGFETRVGD 1213 (1321)
T ss_dssp EETTTBCHHHHHTTEEEECSSCCCCSE-EHHHHHSSSSC------TTTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETT
T ss_pred EEhhhCCHHHHHhheEEECCCCEeeCc-cHHHHHhccCC------CCCCCHHHHHHHHHHhCChHHHHcCcCCCCCEecC
Confidence 99854 57899999999999999987 99999987631 1122356688888888875432
Q ss_pred --CCcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeec
Q 006897 201 --GSFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILS 260 (627)
Q Consensus 201 --~~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~ 260 (627)
..++|||||| |||+||+.+.+.|.+.|+++. .|+|+|+|+|+++. ...||||+||+
T Consensus 1214 ~G~~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~--~~~TvI~IAHRLsT--i~~aD~I~Vld 1289 (1321)
T 4f4c_A 1214 RGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAR--EGRTCIVIAHRLNT--VMNADCIAVVS 1289 (1321)
T ss_dssp TSCSSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTS--SSSEEEEECSSSST--TTTCSEEEEES
T ss_pred CCcccCHHHHHHHHHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHHHHc--CCCEEEEeccCHHH--HHhCCEEEEEE
Confidence 2355899998 999999999999999999874 48999999999984 56799999999
Q ss_pred CCeEEeeCCHHHHHH
Q 006897 261 RGSVVHYGSLELLEE 275 (627)
Q Consensus 261 ~G~iv~~G~~~~~~~ 275 (627)
+|+|++.|+++++.+
T Consensus 1290 ~G~IvE~Gth~eLl~ 1304 (1321)
T 4f4c_A 1290 NGTIIEKGTHTQLMS 1304 (1321)
T ss_dssp SSSEEEEECHHHHHH
T ss_pred CCEEEEECCHHHHHh
Confidence 999999999999875
|
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.97 E-value=9.7e-32 Score=328.37 Aligned_cols=191 Identities=23% Similarity=0.343 Sum_probs=164.0
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
.|+++||+|+|+.+ .++++|+|+||+|++||.+||+||||||||||+++|.|+++|.+ |+|.+||
T Consensus 415 ~I~~~nvsF~Y~~~------------~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~---G~I~idG 479 (1321)
T 4f4c_A 415 DITVENVHFTYPSR------------PDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLK---GKITIDG 479 (1321)
T ss_dssp CEEEEEEEECCSSS------------TTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCSE---EEEEETT
T ss_pred cEEEEEeeeeCCCC------------CCCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhcccccccc---CcccCCC
Confidence 59999999999532 24579999999999999999999999999999999999999864 9999999
Q ss_pred ccCCC--hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCcccc-------------
Q 006897 136 HQIKK--PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVA------------- 200 (627)
Q Consensus 136 ~~~~~--~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~------------- 200 (627)
.++.+ .+.+|++||||+|++.+|.. ||+|||.|+. +. ..++++.++++..++++..
T Consensus 480 ~~i~~~~~~~lr~~i~~v~Q~~~Lf~~-TI~eNI~~g~----~~----~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe 550 (1321)
T 4f4c_A 480 VDVRDINLEFLRKNVAVVSQEPALFNC-TIEENISLGK----EG----ITREEMVAACKMANAEKFIKTLPNGYNTLVGD 550 (1321)
T ss_dssp EETTTSCHHHHHHHEEEECSSCCCCSE-EHHHHHHTTC----TT----CCHHHHHHHHHHTTCHHHHHHSTTTTSSEESS
T ss_pred ccchhccHHHHhhcccccCCcceeeCC-chhHHHhhhc----cc----chHHHHHHHHHHccchhHHHcCCCCCccEecC
Confidence 99753 56789999999999999976 9999999862 11 1245677777777764321
Q ss_pred --CCcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeec
Q 006897 201 --GSFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILS 260 (627)
Q Consensus 201 --~~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~ 260 (627)
..++|||||| |||+||+.++..+.+.|+++. .|+|+|++||+++. .+.||+|++|+
T Consensus 551 ~G~~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~--~~~T~iiiaHrls~--i~~aD~Iivl~ 626 (1321)
T 4f4c_A 551 RGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAA--KGRTTIIIAHRLST--IRNADLIISCK 626 (1321)
T ss_dssp SSCCCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHH--TTSEEEEECSCTTT--TTTCSEEEEEE
T ss_pred CCCCCCHHHHHHHHHHHHHccCCCEEEEecccccCCHHHHHHHHHHHHHHh--CCCEEEEEcccHHH--HHhCCEEEEee
Confidence 2456999999 999999999999999999986 48999999999984 68899999999
Q ss_pred CCeEEeeCCHHHHH
Q 006897 261 RGSVVHYGSLELLE 274 (627)
Q Consensus 261 ~G~iv~~G~~~~~~ 274 (627)
+|+|++.|+++|+.
T Consensus 627 ~G~ive~Gth~eL~ 640 (1321)
T 4f4c_A 627 NGQVVEVGDHRALM 640 (1321)
T ss_dssp TTEEEEEECHHHHH
T ss_pred CCeeeccCCHHHHH
Confidence 99999999999875
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.7e-31 Score=273.99 Aligned_cols=173 Identities=25% Similarity=0.393 Sum_probs=132.5
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
.|+++||++.+ +.+|+|+||+|++||+++|+||||||||||+|+|+|+++|+ .|+|.++|
T Consensus 40 ~l~~~~l~~~~-----------------~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g 99 (290)
T 2bbs_A 40 SLSFSNFSLLG-----------------TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS---EGKIKHSG 99 (290)
T ss_dssp ----------C-----------------CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEE---EEEEECCS
T ss_pred eEEEEEEEEcC-----------------ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CcEEEECC
Confidence 69999999853 24899999999999999999999999999999999999985 39999987
Q ss_pred ccCCChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccc---------------c
Q 006897 136 HQIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHV---------------A 200 (627)
Q Consensus 136 ~~~~~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~---------------~ 200 (627)
++|||||++.+++. ||+||+. +. . ... .++.++++.+++.+. .
T Consensus 100 -----------~i~~v~Q~~~l~~~-tv~enl~-~~--~---~~~----~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 157 (290)
T 2bbs_A 100 -----------RISFCSQNSWIMPG-TIKENII-GV--S---YDE----YRYRSVIKACQLEEDISKFAEKDNIVLGEGG 157 (290)
T ss_dssp -----------CEEEECSSCCCCSS-BHHHHHH-TT--C---CCH----HHHHHHHHHTTCHHHHHTSTTGGGCBC----
T ss_pred -----------EEEEEeCCCccCcc-cHHHHhh-Cc--c---cch----HHHHHHHHHhChHHHHHhccccccchhcCcc
Confidence 38999999988885 9999997 32 1 111 123344444454321 2
Q ss_pred CCcCCccccC------------------CCCCCCHHHHHHHHHHH-HHHHHcCCCEEEEEccCccHHHHHHhhhheeecC
Q 006897 201 GSFVGDEENR------------------GISGLDSTSALQVIELL-ASMAKAKQRTVVLSIHQPSYRILQYISKFLILSR 261 (627)
Q Consensus 201 ~~~~gGe~qr------------------PtsgLD~~~~~~i~~~L-~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~ 261 (627)
..++|||+|| ||+|||+.++..+++.+ +++. .|+|||++|||++. + +.||++++|++
T Consensus 158 ~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~--~~~tviivtHd~~~-~-~~~d~i~~l~~ 233 (290)
T 2bbs_A 158 ITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM--ANKTRILVTSKMEH-L-KKADKILILHE 233 (290)
T ss_dssp CCCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCT--TTSEEEEECCCHHH-H-HHSSEEEEEET
T ss_pred CcCCHHHHHHHHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhh--CCCEEEEEecCHHH-H-HcCCEEEEEEC
Confidence 4678999999 99999999999999974 5553 38999999999973 5 56999999999
Q ss_pred CeEEeeCCHHHHH
Q 006897 262 GSVVHYGSLELLE 274 (627)
Q Consensus 262 G~iv~~G~~~~~~ 274 (627)
|++++.|+++++.
T Consensus 234 G~i~~~g~~~~l~ 246 (290)
T 2bbs_A 234 GSSYFYGTFSELQ 246 (290)
T ss_dssp TEEEEEECHHHHH
T ss_pred CeEEEeCCHHHHh
Confidence 9999999998874
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=2.6e-30 Score=315.01 Aligned_cols=192 Identities=22% Similarity=0.375 Sum_probs=158.1
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
.|+++||+++|+.+ .+.++|+||||++++||++||+||||||||||+++|+|+++|++ |+|.++|
T Consensus 387 ~i~~~~v~~~y~~~------------~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~---G~i~i~g 451 (1284)
T 3g5u_A 387 NLEFKNIHFSYPSR------------KEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLD---GMVSIDG 451 (1284)
T ss_dssp CEEEEEEEECCSST------------TSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCSE---EEEEETT
T ss_pred eEEEEEEEEEcCCC------------CCCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---eEEEECC
Confidence 59999999999532 23469999999999999999999999999999999999999864 9999999
Q ss_pred ccCC--ChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCcc---------------
Q 006897 136 HQIK--KPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTH--------------- 198 (627)
Q Consensus 136 ~~~~--~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~--------------- 198 (627)
+++. +...+|+++|||+|++.+|+. ||+||+.++.. ..+.+ +++++++..++.+
T Consensus 452 ~~i~~~~~~~~r~~i~~v~Q~~~l~~~-ti~eNi~~g~~----~~~~~----~~~~~~~~~~~~~~i~~l~~g~~t~~~~ 522 (1284)
T 3g5u_A 452 QDIRTINVRYLREIIGVVSQEPVLFAT-TIAENIRYGRE----DVTMD----EIEKAVKEANAYDFIMKLPHQFDTLVGE 522 (1284)
T ss_dssp EEGGGSCHHHHHHHEEEECSSCCCCSS-CHHHHHHHHCS----SCCHH----HHHHHHHHTTCHHHHHHSTTGGGCCCSS
T ss_pred EEHHhCCHHHHHhheEEEcCCCccCCc-cHHHHHhcCCC----CCCHH----HHHHHHHHhCcHHHHHhccccccccccC
Confidence 9874 346788899999999999986 99999999731 12222 3344444433321
Q ss_pred ccCCcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeec
Q 006897 199 VAGSFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILS 260 (627)
Q Consensus 199 ~~~~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~ 260 (627)
....++|||||| |||+||+.++..+.+.++++. .|+|+|++||+++. + +.||+|++|+
T Consensus 523 ~g~~LSgGq~QriaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~-i-~~~d~i~vl~ 598 (1284)
T 3g5u_A 523 RGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAR--EGRTTIVIAHRLST-V-RNADVIAGFD 598 (1284)
T ss_dssp SSCSSCHHHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHHHH--TTSEEEEECSCHHH-H-TTCSEEEECS
T ss_pred CCCccCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHc--CCCEEEEEecCHHH-H-HcCCEEEEEE
Confidence 123567999999 999999999999999998875 48999999999983 5 5599999999
Q ss_pred CCeEEeeCCHHHHHH
Q 006897 261 RGSVVHYGSLELLEE 275 (627)
Q Consensus 261 ~G~iv~~G~~~~~~~ 275 (627)
+|++++.|+++++.+
T Consensus 599 ~G~i~~~g~~~~l~~ 613 (1284)
T 3g5u_A 599 GGVIVEQGNHDELMR 613 (1284)
T ss_dssp SSCCCCEECHHHHHH
T ss_pred CCEEEEECCHHHHHh
Confidence 999999999998753
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=3.8e-30 Score=313.61 Aligned_cols=194 Identities=24% Similarity=0.366 Sum_probs=159.1
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
.|+++||+++|+.+ .+.++|+|+||+|++||++||+||||||||||+++|+|+++|++ |+|.++|
T Consensus 1030 ~i~~~~v~~~y~~~------------~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~---G~I~i~g 1094 (1284)
T 3g5u_A 1030 NVQFSGVVFNYPTR------------PSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMA---GSVFLDG 1094 (1284)
T ss_dssp CEEEEEEEBCCSCG------------GGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCSE---EEEESSS
T ss_pred cEEEEEEEEECCCC------------CCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCC---CEEEECC
Confidence 59999999999532 23469999999999999999999999999999999999999864 9999999
Q ss_pred ccCCC--hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccc--------------
Q 006897 136 HQIKK--PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHV-------------- 199 (627)
Q Consensus 136 ~~~~~--~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-------------- 199 (627)
+++.+ .+.+|+++|||||++.+|+ .||+||+.++... ...+ ++++.+.++..++.+.
T Consensus 1095 ~~i~~~~~~~~r~~i~~v~Q~~~l~~-~ti~eNi~~~~~~--~~~~----~~~i~~~~~~~~~~~~i~~l~~gldt~vge 1167 (1284)
T 3g5u_A 1095 KEIKQLNVQWLRAQLGIVSQEPILFD-CSIAENIAYGDNS--RVVS----YEEIVRAAKEANIHQFIDSLPDKYNTRVGD 1167 (1284)
T ss_dssp SCTTSSCHHHHTTSCEEEESSCCCCS-SBHHHHHTCCCSS--CCCC----HHHHHHHHHHHTCHHHHSSTTTGGGCBCST
T ss_pred EEcccCCHHHHHhceEEECCCCcccc-ccHHHHHhccCCC--CCCC----HHHHHHHHHHhCcHHHHHhCccccccccCC
Confidence 99743 4668899999999998886 5999999875311 1112 2334555555555432
Q ss_pred -cCCcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeec
Q 006897 200 -AGSFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILS 260 (627)
Q Consensus 200 -~~~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~ 260 (627)
...++|||||| ||+|||+.+++.+.+.|++.. .|+|+|++|||++. + +.||||++|+
T Consensus 1168 ~G~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~~--~~~tvi~isH~l~~-i-~~~dri~vl~ 1243 (1284)
T 3g5u_A 1168 KGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAR--EGRTCIVIAHRLST-I-QNADLIVVIQ 1243 (1284)
T ss_dssp TSCSSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHHS--SSSCEEEECSCTTG-G-GSCSEEEEEE
T ss_pred CCCccCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHhC--CCCEEEEEecCHHH-H-HcCCEEEEEE
Confidence 13467999999 999999999999999998863 48999999999984 5 5699999999
Q ss_pred CCeEEeeCCHHHHHH
Q 006897 261 RGSVVHYGSLELLEE 275 (627)
Q Consensus 261 ~G~iv~~G~~~~~~~ 275 (627)
+|++++.|+++++.+
T Consensus 1244 ~G~i~~~g~~~~l~~ 1258 (1284)
T 3g5u_A 1244 NGKVKEHGTHQQLLA 1258 (1284)
T ss_dssp TBEEEEEECHHHHHH
T ss_pred CCEEEEECCHHHHHh
Confidence 999999999998764
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.7e-28 Score=277.01 Aligned_cols=185 Identities=18% Similarity=0.190 Sum_probs=156.3
Q ss_pred cceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEE
Q 006897 54 TCKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITV 133 (627)
Q Consensus 54 ~~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i 133 (627)
..+++++|+++.|+ + ..|+++||++++||++||+||||||||||+|+|+|+++|++ |+|.+
T Consensus 355 ~~~l~~~~l~~~~~---------------~-~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~---G~I~~ 415 (607)
T 3bk7_A 355 ETLVEYPRLVKDYG---------------S-FKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTE---GKVEW 415 (607)
T ss_dssp CEEEEECCEEEECS---------------S-CEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSB---SCCCC
T ss_pred ceEEEEeceEEEec---------------c-eEEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCc---eEEEE
Confidence 45799999999983 1 26999999999999999999999999999999999999864 88864
Q ss_pred CCccCCChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccC----CcCCcccc
Q 006897 134 NCHQIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAG----SFVGDEEN 209 (627)
Q Consensus 134 ~g~~~~~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~----~~~gGe~q 209 (627)
++.+||+||+..+.+.+||.|++....... ....++++++++.+||.+..+ +++|||+|
T Consensus 416 -----------~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~------~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~Q 478 (607)
T 3bk7_A 416 -----------DLTVAYKPQYIKAEYEGTVYELLSKIDSSK------LNSNFYKTELLKPLGIIDLYDRNVEDLSGGELQ 478 (607)
T ss_dssp -----------CCCEEEECSSCCCCCSSBHHHHHHHHHHHH------HHCHHHHHHTHHHHTCTTTTTSBGGGCCHHHHH
T ss_pred -----------eeEEEEEecCccCCCCCcHHHHHHhhhccC------CCHHHHHHHHHHHcCCchHhcCChhhCCHHHHH
Confidence 246999999987777899999887641110 112356889999999987665 45699999
Q ss_pred C------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecC--CeEEeeCC
Q 006897 210 R------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSR--GSVVHYGS 269 (627)
Q Consensus 210 r------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~--G~iv~~G~ 269 (627)
| ||+|||+.++..++++|++++++.|+|||++|||++ ++..+|||+++|++ |+++..|+
T Consensus 479 Rv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~-~~~~~adrv~vl~~~~g~~~~~g~ 557 (607)
T 3bk7_A 479 RVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVL-MIDYVSDRLIVFEGEPGRHGRALP 557 (607)
T ss_dssp HHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEEEETTTEEEECC
T ss_pred HHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEcCCcceEEecCC
Confidence 9 999999999999999999998667899999999998 48889999999986 88888999
Q ss_pred HHHHHH
Q 006897 270 LELLEE 275 (627)
Q Consensus 270 ~~~~~~ 275 (627)
++++..
T Consensus 558 p~~~~~ 563 (607)
T 3bk7_A 558 PMGMRE 563 (607)
T ss_dssp CEEHHH
T ss_pred HHHHHh
Confidence 988765
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.8e-28 Score=273.79 Aligned_cols=185 Identities=18% Similarity=0.190 Sum_probs=155.1
Q ss_pred cceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEE
Q 006897 54 TCKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITV 133 (627)
Q Consensus 54 ~~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i 133 (627)
...++++|+++.|+ + ..|+++||++++||++||+||||||||||+|+|+|+++|+. |+|.+
T Consensus 285 ~~~l~~~~l~~~~~---------------~-~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~---G~i~~ 345 (538)
T 1yqt_A 285 ETLVTYPRLVKDYG---------------S-FRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTE---GKIEW 345 (538)
T ss_dssp CEEEEECCEEEEET---------------T-EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSB---CCCCC
T ss_pred CeEEEEeeEEEEEC---------------C-EEEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---eEEEE
Confidence 45799999999993 1 36999999999999999999999999999999999999864 88864
Q ss_pred CCccCCChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccC----CcCCcccc
Q 006897 134 NCHQIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAG----SFVGDEEN 209 (627)
Q Consensus 134 ~g~~~~~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~----~~~gGe~q 209 (627)
+..+|||+|+....+.+||.|++....... ....++++++++.+|+.+..+ .++|||||
T Consensus 346 -----------~~~i~~v~Q~~~~~~~~tv~~~~~~~~~~~------~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~q 408 (538)
T 1yqt_A 346 -----------DLTVAYKPQYIKADYEGTVYELLSKIDASK------LNSNFYKTELLKPLGIIDLYDREVNELSGGELQ 408 (538)
T ss_dssp -----------CCCEEEECSSCCCCCSSBHHHHHHHHHHHH------HTCHHHHHHTTTTTTCGGGTTSBGGGCCHHHHH
T ss_pred -----------CceEEEEecCCcCCCCCcHHHHHHhhhccC------CCHHHHHHHHHHHcCChhhhcCChhhCCHHHHH
Confidence 235999999987777889999887541111 011356788999999977655 45699999
Q ss_pred C------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecC--CeEEeeCC
Q 006897 210 R------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSR--GSVVHYGS 269 (627)
Q Consensus 210 r------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~--G~iv~~G~ 269 (627)
| ||+|||+.++.++.++|++++++.|.|||++|||++ ++..+|||+++|++ |+++..|+
T Consensus 409 rv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~-~~~~~~drv~vl~~~~~~~~~~g~ 487 (538)
T 1yqt_A 409 RVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVL-MIDYVSDRLMVFEGEPGKYGRALP 487 (538)
T ss_dssp HHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHH-HHHHHCSEEEEEEEETTTEEEECC
T ss_pred HHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEeCCcceEeecCC
Confidence 9 999999999999999999997656899999999998 58899999999986 78888999
Q ss_pred HHHHHH
Q 006897 270 LELLEE 275 (627)
Q Consensus 270 ~~~~~~ 275 (627)
++++..
T Consensus 488 ~~~~~~ 493 (538)
T 1yqt_A 488 PMGMRE 493 (538)
T ss_dssp CEEHHH
T ss_pred HHHHHh
Confidence 987764
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.6e-27 Score=265.63 Aligned_cols=186 Identities=19% Similarity=0.210 Sum_probs=153.3
Q ss_pred cceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEE
Q 006897 54 TCKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITV 133 (627)
Q Consensus 54 ~~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i 133 (627)
...++++|+++.|+ + ..|+++|+++++||++||+||||||||||+|+|+|+++|++ |+|.+
T Consensus 267 ~~~l~~~~l~~~~~---------------~-~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~---G~i~~ 327 (538)
T 3ozx_A 267 KTKMKWTKIIKKLG---------------D-FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADE---GSVTP 327 (538)
T ss_dssp CEEEEECCEEEEET---------------T-EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSB---CCEES
T ss_pred cceEEEcceEEEEC---------------C-EEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---cEEEE
Confidence 45799999999993 1 35888899999999999999999999999999999999964 99986
Q ss_pred CCccCCChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccCC----cCCcccc
Q 006897 134 NCHQIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAGS----FVGDEEN 209 (627)
Q Consensus 134 ~g~~~~~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~----~~gGe~q 209 (627)
++ +.++|++|+......+||.||+.+... .... ...+.++++++.+||.+..++ ++|||||
T Consensus 328 ~~----------~~i~~~~q~~~~~~~~tv~~~l~~~~~---~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~Q 392 (538)
T 3ozx_A 328 EK----------QILSYKPQRIFPNYDGTVQQYLENASK---DALS--TSSWFFEEVTKRLNLHRLLESNVNDLSGGELQ 392 (538)
T ss_dssp SC----------CCEEEECSSCCCCCSSBHHHHHHHHCS---STTC--TTSHHHHHTTTTTTGGGCTTSBGGGCCHHHHH
T ss_pred CC----------eeeEeechhcccccCCCHHHHHHHhhh---hccc--hhHHHHHHHHHHcCCHHHhcCChhhCCHHHHH
Confidence 54 348999999766667899999987421 1111 123457889999999876554 5699999
Q ss_pred C------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecC--CeEEeeCC
Q 006897 210 R------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSR--GSVVHYGS 269 (627)
Q Consensus 210 r------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~--G~iv~~G~ 269 (627)
| ||+|||+.++.+++++|++++++.|+|||++|||++ ++..+||||++|++ |.....++
T Consensus 393 Rv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~-~~~~~aDri~vl~~~~~~~~~~~~ 471 (538)
T 3ozx_A 393 KLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLS-IHDYIADRIIVFKGEPEKAGLATS 471 (538)
T ss_dssp HHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEEEETTTEEEECC
T ss_pred HHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEeCCcceeccCCC
Confidence 9 999999999999999999998777999999999998 58899999999986 56667777
Q ss_pred HHHHH
Q 006897 270 LELLE 274 (627)
Q Consensus 270 ~~~~~ 274 (627)
+.++.
T Consensus 472 ~~~~~ 476 (538)
T 3ozx_A 472 PVTLK 476 (538)
T ss_dssp CEEHH
T ss_pred hHHHH
Confidence 65543
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.2e-26 Score=259.29 Aligned_cols=171 Identities=16% Similarity=0.217 Sum_probs=141.1
Q ss_pred ceeeceEEEEeCC-----eEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCccCCChhhhcccEEEEccCCCCCC
Q 006897 85 HILKSVSFEARDS-----EILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKKPAQLRKICGFVAQEDNLLP 159 (627)
Q Consensus 85 ~iL~~vsl~i~~G-----e~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~~~~~~~~r~~ig~v~Q~~~l~~ 159 (627)
.+++|+||++++| |++||+||||||||||+|+|+|+++|++ |+. +. +..++|++|+.....
T Consensus 361 ~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~---G~~------~~-----~~~i~~~~q~~~~~~ 426 (608)
T 3j16_B 361 KTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDE---GQD------IP-----KLNVSMKPQKIAPKF 426 (608)
T ss_dssp EECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSB---CCC------CC-----SCCEEEECSSCCCCC
T ss_pred cccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCC---CcC------cc-----CCcEEEecccccccC
Confidence 4799999999999 7899999999999999999999999864 641 11 346999999976555
Q ss_pred CCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccC----CcCCccccC------------------CCCCCCH
Q 006897 160 LLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAG----SFVGDEENR------------------GISGLDS 217 (627)
Q Consensus 160 ~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~----~~~gGe~qr------------------PtsgLD~ 217 (627)
..||+|++... .+. .. ...+.++++++.+||.+.++ +++|||+|| ||+|||+
T Consensus 427 ~~tv~e~~~~~--~~~-~~---~~~~~~~~~l~~l~l~~~~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~ 500 (608)
T 3j16_B 427 PGTVRQLFFKK--IRG-QF---LNPQFQTDVVKPLRIDDIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDS 500 (608)
T ss_dssp CSBHHHHHHHH--CSS-TT---TSHHHHHHTHHHHTSTTTSSSBSSSCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCH
T ss_pred CccHHHHHHHH--hhc-cc---ccHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCH
Confidence 67999987643 111 11 12345778999999987665 456999999 9999999
Q ss_pred HHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecC--CeEEeeCCHHHHHHH
Q 006897 218 TSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSR--GSVVHYGSLELLEET 276 (627)
Q Consensus 218 ~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~--G~iv~~G~~~~~~~~ 276 (627)
.++.+++++|++++++.|+|||++|||++ ++..+|||+++|++ |+++..|+++++...
T Consensus 501 ~~~~~i~~ll~~l~~~~g~tviivtHdl~-~~~~~aDrvivl~~~~g~~~~~g~p~~~~~~ 560 (608)
T 3j16_B 501 EQRIICSKVIRRFILHNKKTAFIVEHDFI-MATYLADKVIVFEGIPSKNAHARAPESLLTG 560 (608)
T ss_dssp HHHHHHHHHHHHHHHHHTCEEEEECSCHH-HHHHHCSEEEECEEETTTEEECCCCEEHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEeCCCCeEEecCChHHHhhh
Confidence 99999999999997666999999999998 58899999999986 899999999887654
|
| >3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus} | Back alignment and structure |
|---|
Probab=99.92 E-value=2.7e-26 Score=263.73 Aligned_cols=186 Identities=22% Similarity=0.303 Sum_probs=117.9
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHH---------------------HHHHcCCCCCCC----ccceEEECCccC
Q 006897 84 LHILKSVSFEARDSEILAVVGPSGTGKSSLL---------------------RIISGRVRDQDF----DPRSITVNCHQI 138 (627)
Q Consensus 84 ~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl---------------------~~L~Gl~~~~~~----~~G~i~i~g~~~ 138 (627)
+++|+||||+|++||++||+||||||||||+ +++.|+.+|+.. ..|.|.+++.+.
T Consensus 31 ~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~~ 110 (670)
T 3ux8_A 31 AHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKTT 110 (670)
T ss_dssp STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC-
T ss_pred ccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCchh
Confidence 4689999999999999999999999999998 888888877521 136677777653
Q ss_pred CChhhhcccEEEEccCCC-------------------CCCCCCHHHHHHHHHHhcCCCCCHHHHH------HHHHHHHHH
Q 006897 139 KKPAQLRKICGFVAQEDN-------------------LLPLLTVKETLMFSANFRLKGMSHKEKE------DRVESLMDE 193 (627)
Q Consensus 139 ~~~~~~r~~ig~v~Q~~~-------------------l~~~lTV~e~l~~~~~~~~~~~~~~~~~------~~v~~~l~~ 193 (627)
. ...++.+|+|+|... .++.+||.||+.+...........+..+ ....++++.
T Consensus 111 ~--~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 188 (670)
T 3ux8_A 111 S--RNPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRLGFLQN 188 (670)
T ss_dssp ------CCBHHHHTTCC-------------------------CC--------------------------CHHHHHHHHH
T ss_pred h--ccchhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHHHHHHHH
Confidence 2 112334555554322 3457899999987532211110111111 112245888
Q ss_pred cCCccc-----cCCcCCccccC--------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHH
Q 006897 194 LGLTHV-----AGSFVGDEENR--------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYR 248 (627)
Q Consensus 194 lgL~~~-----~~~~~gGe~qr--------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~ 248 (627)
+||.+. ..+++|||||| ||+|||+.++..++++|+++++ .|+|||+||||++.
T Consensus 189 ~gL~~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~-~g~tvi~vtHd~~~- 266 (670)
T 3ux8_A 189 VGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRD-LGNTLIVVEHDEDT- 266 (670)
T ss_dssp TTCTTCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHH-TTCEEEEECCCHHH-
T ss_pred cCCchhhhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHH-cCCEEEEEeCCHHH-
Confidence 998653 45677999998 9999999999999999999976 59999999999973
Q ss_pred HHHHhhhheee------cCCeEEeeCCHHHHH
Q 006897 249 ILQYISKFLIL------SRGSVVHYGSLELLE 274 (627)
Q Consensus 249 i~~~~D~i~vL------~~G~iv~~G~~~~~~ 274 (627)
...||++++| ++|++++.|+++++.
T Consensus 267 -~~~~d~ii~l~~g~~~~~G~i~~~g~~~~~~ 297 (670)
T 3ux8_A 267 -MLAADYLIDIGPGAGIHGGEVVAAGTPEEVM 297 (670)
T ss_dssp -HHHCSEEEEECSSSGGGCCSEEEEECHHHHH
T ss_pred -HhhCCEEEEecccccccCCEEEEecCHHHHh
Confidence 4579999999 899999999998874
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=99.92 E-value=5.8e-25 Score=256.54 Aligned_cols=176 Identities=14% Similarity=0.193 Sum_probs=143.7
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
.|...|++++|+ ++.+|+|+||++++||+++|+||||||||||+|+|+| |+| +|
T Consensus 435 ~L~~~~ls~~yg---------------~~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag---------G~i--~g 488 (986)
T 2iw3_A 435 DLCNCEFSLAYG---------------AKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN---------GQV--DG 488 (986)
T ss_dssp EEEEEEEEEEET---------------TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH---------TCS--TT
T ss_pred eeEEeeEEEEEC---------------CEEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC---------CCc--CC
Confidence 577789999993 3469999999999999999999999999999999994 322 33
Q ss_pred ccCCChhhhcccEEEEccCC-CCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCc-cc----cCCcCCcccc
Q 006897 136 HQIKKPAQLRKICGFVAQED-NLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLT-HV----AGSFVGDEEN 209 (627)
Q Consensus 136 ~~~~~~~~~r~~ig~v~Q~~-~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~----~~~~~gGe~q 209 (627)
.+.. .. .+++|++|+. .+++.+||.||+.+ . ..+. +++++++|+.+||. +. ...++|||||
T Consensus 489 ~~~~--~~--~~~~~v~q~~~~~~~~ltv~e~l~~--~--~~~~-----~~~v~~~L~~lgL~~~~~~~~~~~LSGGqkQ 555 (986)
T 2iw3_A 489 FPTQ--EE--CRTVYVEHDIDGTHSDTSVLDFVFE--S--GVGT-----KEAIKDKLIEFGFTDEMIAMPISALSGGWKM 555 (986)
T ss_dssp CCCT--TT--SCEEETTCCCCCCCTTSBHHHHHHT--T--CSSC-----HHHHHHHHHHTTCCHHHHHSBGGGCCHHHHH
T ss_pred Cccc--cc--eeEEEEcccccccccCCcHHHHHHH--h--hcCH-----HHHHHHHHHHcCCChhhhcCCcccCCHHHHH
Confidence 3311 11 2378999984 67888999999975 1 1111 56789999999994 33 3467799999
Q ss_pred C------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEE-eeCCH
Q 006897 210 R------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVV-HYGSL 270 (627)
Q Consensus 210 r------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv-~~G~~ 270 (627)
| ||+|||+.++..+.+.|++ .|+|||++|||++ ++.++||++++|++|+++ +.|++
T Consensus 556 RvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~----~g~tvIivSHdl~-~l~~~adrii~L~~G~iv~~~G~~ 630 (986)
T 2iw3_A 556 KLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT----CGITSITISHDSV-FLDNVCEYIINYEGLKLRKYKGNF 630 (986)
T ss_dssp HHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH----SCSEEEEECSCHH-HHHHHCSEEEEEETTEEEEEESCH
T ss_pred HHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHh----CCCEEEEEECCHH-HHHHhCCEEEEEECCeeecCCCCH
Confidence 9 9999999999999999987 3899999999998 488999999999999997 68999
Q ss_pred HHHHH
Q 006897 271 ELLEE 275 (627)
Q Consensus 271 ~~~~~ 275 (627)
+++.+
T Consensus 631 ~e~~~ 635 (986)
T 2iw3_A 631 TEFVK 635 (986)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 88754
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=99.92 E-value=5.7e-26 Score=256.41 Aligned_cols=176 Identities=19% Similarity=0.257 Sum_probs=138.0
Q ss_pred eEEE--------EeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCc
Q 006897 56 KVTV--------RNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFD 127 (627)
Q Consensus 56 ~l~~--------~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~ 127 (627)
.|++ +||+++|+. ...+|+|+| ++++||++||+||||||||||||+|+|+++|+.
T Consensus 83 ~i~i~~l~~~~~~~ls~~yg~--------------~~~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~-- 145 (607)
T 3bk7_A 83 AISIVNLPEQLDEDCVHRYGV--------------NAFVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNL-- 145 (607)
T ss_dssp CCEEEEECTTGGGSEEEECST--------------TCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCT--
T ss_pred eEEEecCCccccCCeEEEECC--------------CCeeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCCCC--
Confidence 4788 888888831 124899999 999999999999999999999999999999875
Q ss_pred cceE---------EECCccCCCh--h--hhcccEEEEccCCCCCC---CCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 006897 128 PRSI---------TVNCHQIKKP--A--QLRKICGFVAQEDNLLP---LLTVKETLMFSANFRLKGMSHKEKEDRVESLM 191 (627)
Q Consensus 128 ~G~i---------~i~g~~~~~~--~--~~r~~ig~v~Q~~~l~~---~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l 191 (627)
|++ .++|.++... . ..+..+++++|+..+.+ ..||.|++... +..+++++++
T Consensus 146 -G~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~-----------~~~~~~~~~L 213 (607)
T 3bk7_A 146 -CEDNDSWDNVIRAFRGNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKV-----------DEVGKFEEVV 213 (607)
T ss_dssp -TTTCCCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEECSCGGGGGGTCCSBHHHHHHHT-----------CCSSCHHHHH
T ss_pred -CccccccchhhheeCCEehhhhhhhhhhhhcceEEeechhhhchhhccccHHHHhhhh-----------HHHHHHHHHH
Confidence 664 3455543111 1 12345889999743322 13999998631 0124578899
Q ss_pred HHcCCccccCC----cCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHH
Q 006897 192 DELGLTHVAGS----FVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRI 249 (627)
Q Consensus 192 ~~lgL~~~~~~----~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i 249 (627)
+.+||++..++ ++|||+|| ||++||+.++..+++.|+++++ .|+|||++|||++ .+
T Consensus 214 ~~lgL~~~~~~~~~~LSGGekQRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~-~g~tvIivsHdl~-~~ 291 (607)
T 3bk7_A 214 KELELENVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLAN-EGKAVLVVEHDLA-VL 291 (607)
T ss_dssp HHTTCTTGGGSBGGGCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHH-TTCEEEEECSCHH-HH
T ss_pred HHcCCCchhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHh-cCCEEEEEecChH-HH
Confidence 99999876654 56999999 9999999999999999999976 4999999999998 48
Q ss_pred HHHhhhheeecCC
Q 006897 250 LQYISKFLILSRG 262 (627)
Q Consensus 250 ~~~~D~i~vL~~G 262 (627)
..+||||++|+++
T Consensus 292 ~~~adri~vl~~~ 304 (607)
T 3bk7_A 292 DYLSDVIHVVYGE 304 (607)
T ss_dssp HHHCSEEEEEESC
T ss_pred HhhCCEEEEECCC
Confidence 8899999999865
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=99.92 E-value=1.2e-25 Score=262.37 Aligned_cols=186 Identities=17% Similarity=0.250 Sum_probs=139.9
Q ss_pred cceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEE
Q 006897 54 TCKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITV 133 (627)
Q Consensus 54 ~~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i 133 (627)
..+|+++||+++|+. ..+++|+|+||++++||++||+||||||||||+|+|+|+++|++ |+|.+
T Consensus 669 ~~mL~v~nLs~~Y~g-------------~~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P~s---G~I~~ 732 (986)
T 2iw3_A 669 KAIVKVTNMEFQYPG-------------TSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTS---GEVYT 732 (986)
T ss_dssp SEEEEEEEEEECCTT-------------CSSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCCSE---EEEEE
T ss_pred CceEEEEeeEEEeCC-------------CCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCc---eEEEE
Confidence 457999999999942 12468999999999999999999999999999999999999864 99999
Q ss_pred CCccCCChhhhcccEEEEccCCCC----CCCCCHHHHHHHHHHhc-----------------------------------
Q 006897 134 NCHQIKKPAQLRKICGFVAQEDNL----LPLLTVKETLMFSANFR----------------------------------- 174 (627)
Q Consensus 134 ~g~~~~~~~~~r~~ig~v~Q~~~l----~~~lTV~e~l~~~~~~~----------------------------------- 174 (627)
+|. ..+||++|++.. ....|+.|++.+.....
T Consensus 733 ~~~---------~~I~yv~Q~~~~~l~~~~~~t~~e~i~~~~q~g~d~~~~~~~~~~l~~ed~~~~~~~~~~~g~~r~~~ 803 (986)
T 2iw3_A 733 HEN---------CRIAYIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIA 803 (986)
T ss_dssp CTT---------CCEEEECHHHHHHGGGCTTSCHHHHHHHHTTTSSCTTTTTTTSCCCCSSCSSGGGCCEEETTEEEEEE
T ss_pred cCc---------cceEeeccchhhhhhcccccCHHHHHHHHhhccchhhhhhhhhhccchhhhhhhhcccccccchhhhh
Confidence 762 137777776421 12346666665421000
Q ss_pred ------------------------------C----------------------------------CCCCHHHHHHHHHHH
Q 006897 175 ------------------------------L----------------------------------KGMSHKEKEDRVESL 190 (627)
Q Consensus 175 ------------------------------~----------------------------------~~~~~~~~~~~v~~~ 190 (627)
. .+..+...+++++++
T Consensus 804 ~i~~r~~~~~~~~~e~~~sv~ENi~l~~~~~~~lt~~en~~~~~~~l~~~~~~~v~~~d~~~~~~~g~~~~~~~~~i~~~ 883 (986)
T 2iw3_A 804 GIHSRRKFKNTYEYECSFLLGENIGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEH 883 (986)
T ss_dssp EEEEEEEETTEEEEEEEEEEEESTTSTTCEEEECCGGGCEEEEGGGTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHH
T ss_pred hhhhhhhhcccchhhhhhhhhhhhhcccccccccchhhhhhhhhHHHhhhHhhhhhhhhhhhhhhhcccchhHHHHHHHH
Confidence 0 000001124568899
Q ss_pred HHHcCCcc-c-----cCCcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCcc
Q 006897 191 MDELGLTH-V-----AGSFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPS 246 (627)
Q Consensus 191 l~~lgL~~-~-----~~~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~ 246 (627)
|+.+||.+ . ...++|||||| ||+|||+.+...+.+.|+++ |.|||++|||++
T Consensus 884 Le~lGL~~~~~~~~~~~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~----g~tVIiISHD~e 959 (986)
T 2iw3_A 884 CSMLGLDPEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF----EGGVIIITHSAE 959 (986)
T ss_dssp HHHTTCCHHHHHHSCGGGCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSC----SSEEEEECSCHH
T ss_pred HHHcCCCchhhcCCCccccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHh----CCEEEEEECCHH
Confidence 99999964 2 24677999999 99999999999999888653 579999999998
Q ss_pred HHHHHHhhhheeecCCeEEeeCC
Q 006897 247 YRILQYISKFLILSRGSVVHYGS 269 (627)
Q Consensus 247 ~~i~~~~D~i~vL~~G~iv~~G~ 269 (627)
.+.++||++++|++|+++..|+
T Consensus 960 -~v~~l~DrVivL~~G~Iv~~G~ 981 (986)
T 2iw3_A 960 -FTKNLTEEVWAVKDGRMTPSGH 981 (986)
T ss_dssp -HHTTTCCEEECCBTTBCCC---
T ss_pred -HHHHhCCEEEEEECCEEEEeCC
Confidence 4778999999999999988774
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.1e-25 Score=251.45 Aligned_cols=175 Identities=17% Similarity=0.220 Sum_probs=135.5
Q ss_pred EEE-EeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceE----
Q 006897 57 VTV-RNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSI---- 131 (627)
Q Consensus 57 l~~-~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i---- 131 (627)
.++ +||+++|+. ...+|+|+| +|++||++||+||||||||||+|+|+|+++|+. |++
T Consensus 21 ~~~~~~ls~~yg~--------------~~~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~---G~~~~~~ 82 (538)
T 1yqt_A 21 EQLEEDCVHRYGV--------------NAFVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNL---CGDNDSW 82 (538)
T ss_dssp ---CCCEEEECST--------------TCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCT---TTTCCSH
T ss_pred hhHhcCcEEEECC--------------ccccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---CccCcch
Confidence 456 699999931 124899999 999999999999999999999999999999875 664
Q ss_pred -----EECCccCCCh--h--hhcccEEEEccCCCCCCC---CCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccc
Q 006897 132 -----TVNCHQIKKP--A--QLRKICGFVAQEDNLLPL---LTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHV 199 (627)
Q Consensus 132 -----~i~g~~~~~~--~--~~r~~ig~v~Q~~~l~~~---lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~ 199 (627)
.++|.++... . ..+..+++++|+..+++. .|+.|++... +..++++++++.+||++.
T Consensus 83 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~e~~~~~-----------~~~~~~~~~l~~lgl~~~ 151 (538)
T 1yqt_A 83 DGVIRAFRGNELQNYFEKLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKA-----------DETGKLEEVVKALELENV 151 (538)
T ss_dssp HHHHHHTTTSTHHHHHHHHHTTSCCCEEECSCGGGSGGGCCSBHHHHHHHH-----------CSSSCHHHHHHHTTCTTT
T ss_pred hhhHHhhCCccHHHHHHHHHHHhhhhhhhhhhhhhcchhhhccHHHHHhhh-----------hHHHHHHHHHHHcCCChh
Confidence 3455543110 1 123458899997544332 3899988531 112457889999999876
Q ss_pred cC----CcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhhe
Q 006897 200 AG----SFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFL 257 (627)
Q Consensus 200 ~~----~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~ 257 (627)
.+ +++|||+|| ||++||+.++..+++.|+++++ .|+|||++|||++ ++.++|||++
T Consensus 152 ~~~~~~~LSgGekQRv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~-~g~tvi~vsHd~~-~~~~~~dri~ 229 (538)
T 1yqt_A 152 LEREIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSE-EGKSVLVVEHDLA-VLDYLSDIIH 229 (538)
T ss_dssp TTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH-TTCEEEEECSCHH-HHHHHCSEEE
T ss_pred hhCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCHH-HHHHhCCEEE
Confidence 55 456999999 9999999999999999999976 5999999999998 5889999999
Q ss_pred eecCC
Q 006897 258 ILSRG 262 (627)
Q Consensus 258 vL~~G 262 (627)
+|++|
T Consensus 230 vl~~~ 234 (538)
T 1yqt_A 230 VVYGE 234 (538)
T ss_dssp EEEEE
T ss_pred EEcCc
Confidence 99865
|
| >3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus} | Back alignment and structure |
|---|
Probab=99.90 E-value=3.8e-24 Score=245.77 Aligned_cols=175 Identities=26% Similarity=0.348 Sum_probs=128.3
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHH----------------------cCCCCCCCccceEEECCccCCChh
Q 006897 85 HILKSVSFEARDSEILAVVGPSGTGKSSLLRIIS----------------------GRVRDQDFDPRSITVNCHQIKKPA 142 (627)
Q Consensus 85 ~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~----------------------Gl~~~~~~~~G~i~i~g~~~~~~~ 142 (627)
.+|+||||+|++||++||+||||||||||+++|. |+..+ .|.+.+++.++....
T Consensus 336 ~~L~~vsl~I~~Ge~vaIiGpnGsGKSTLl~~i~~~~~~~~~~~~~~~~g~~~~i~gl~~~----~~~i~~~~~~~~~~~ 411 (670)
T 3ux8_A 336 HNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHL----DKVIDIDQSPIGRTP 411 (670)
T ss_dssp TTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHCCCSCCCSCSEEECGGGC----SEEEECCSSCSCSST
T ss_pred cccccceeEecCCCEEEEEeeCCCCHHHHHHHHHHHHHHHHhhhccccccccccccccccc----CceeEeccccCCCCC
Confidence 5899999999999999999999999999998764 22222 167777776642100
Q ss_pred --h-----------------------------------------hcccEEEEccCCCCCC--------------------
Q 006897 143 --Q-----------------------------------------LRKICGFVAQEDNLLP-------------------- 159 (627)
Q Consensus 143 --~-----------------------------------------~r~~ig~v~Q~~~l~~-------------------- 159 (627)
. .....|+++|+..+++
T Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 491 (670)
T 3ux8_A 412 RSNPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLE 491 (670)
T ss_dssp TCCHHHHHTHHHHHHHHHHTSHHHHHHTCCGGGGCTTSTTTBCTTTTTCCC------------CCCTTTTTCCBCHHHHT
T ss_pred CcchhhhhhhhHHHHHHhcccchhhhcccccccccccCCCCccccccccceEeeecccccccccccccccCcccChhhhh
Confidence 0 0011244444333222
Q ss_pred ------------CCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCcc-----ccCCcCCccccC------------
Q 006897 160 ------------LLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTH-----VAGSFVGDEENR------------ 210 (627)
Q Consensus 160 ------------~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-----~~~~~~gGe~qr------------ 210 (627)
.+||.||+.+... . ...+++.+.++.+||.. ...+++||||||
T Consensus 492 ~~~~~~~~~~~~~ltv~e~l~~~~~------~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iAraL~~~p~ 563 (670)
T 3ux8_A 492 VTYKGKNIAEVLDMTVEDALDFFAS------I--PKIKRKLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSN 563 (670)
T ss_dssp CCBTTBCHHHHHTSBHHHHHHHTTT------C--HHHHHHHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHHHHSCCC
T ss_pred eeecCCCHHHHhhCCHHHHHHHHHH------h--hhHHHHHHHHHHcCCchhhccCCchhCCHHHHHHHHHHHHHhhCCC
Confidence 4799999987521 1 12345677888899853 235677999998
Q ss_pred ---------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheee------cCCeEEeeCCHHHHH
Q 006897 211 ---------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLIL------SRGSVVHYGSLELLE 274 (627)
Q Consensus 211 ---------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL------~~G~iv~~G~~~~~~ 274 (627)
||+|||+.++.+++++|++++++ |+|||+||||++. + +.||||++| ++|++++.|+++++.
T Consensus 564 ~p~llllDEPt~~LD~~~~~~i~~~l~~l~~~-g~tvi~vtHd~~~-~-~~~d~i~~l~~~~g~~~G~i~~~g~~~~~~ 639 (670)
T 3ux8_A 564 GRTLYILDEPTTGLHVDDIARLLDVLHRLVDN-GDTVLVIEHNLDV-I-KTADYIIDLGPEGGDRGGQIVAVGTPEEVA 639 (670)
T ss_dssp SCEEEEEESTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEECCCHHH-H-TTCSEEEEEESSSGGGCCEEEEEECHHHHH
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCHHH-H-HhCCEEEEecCCcCCCCCEEEEecCHHHHH
Confidence 99999999999999999999764 9999999999973 4 679999999 899999999998874
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.86 E-value=6e-23 Score=231.37 Aligned_cols=166 Identities=21% Similarity=0.263 Sum_probs=121.2
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEE-----------ECCccCCC--hhhhcccE--E
Q 006897 85 HILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSIT-----------VNCHQIKK--PAQLRKIC--G 149 (627)
Q Consensus 85 ~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~-----------i~g~~~~~--~~~~r~~i--g 149 (627)
..|++++ .+++||++||+||||||||||||+|+|+++|+. |+|. +.|.++.. .....+.+ .
T Consensus 92 ~~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~---G~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 167 (608)
T 3j16_B 92 FKLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQKPNL---GRFDDPPEWQEIIKYFRGSELQNYFTKMLEDDIKAI 167 (608)
T ss_dssp CEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCT---TTTCCSSCHHHHHHHTTTSTHHHHHHHHHHTSCCCE
T ss_pred eeecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCCCCC---ceEecccchhhhhheecChhhhhhhhHHHHHhhhhh
Confidence 3677777 689999999999999999999999999999975 7762 23322110 01111222 2
Q ss_pred EEccCCCC------CCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccC----CcCCccccC---------
Q 006897 150 FVAQEDNL------LPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAG----SFVGDEENR--------- 210 (627)
Q Consensus 150 ~v~Q~~~l------~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~----~~~gGe~qr--------- 210 (627)
+.+|.... -+..++.+++... . ++..++++++++.+||++..+ +++|||+||
T Consensus 168 ~~~~~~~~~~~~~~~~~~~v~~~l~~~----~-----~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGe~Qrv~iAraL~~ 238 (608)
T 3j16_B 168 IKPQYVDNIPRAIKGPVQKVGELLKLR----M-----EKSPEDVKRYIKILQLENVLKRDIEKLSGGELQRFAIGMSCVQ 238 (608)
T ss_dssp EECCCTTTHHHHCSSSSSHHHHHHHHH----C-----CSCHHHHHHHHHHHTCTGGGGSCTTTCCHHHHHHHHHHHHHHS
T ss_pred hchhhhhhhhhhhcchhhHHHHHHhhh----h-----hhHHHHHHHHHHHcCCcchhCCChHHCCHHHHHHHHHHHHHHh
Confidence 33443211 1123566655432 1 112457889999999987665 456999999
Q ss_pred ---------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEE
Q 006897 211 ---------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVV 265 (627)
Q Consensus 211 ---------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv 265 (627)
||++||+.++..+.+.|+++++ .|+|||++|||++ ++..+|||+++|++|..+
T Consensus 239 ~p~llllDEPts~LD~~~~~~l~~~l~~l~~-~g~tvi~vtHdl~-~~~~~~drv~vl~~~~~~ 300 (608)
T 3j16_B 239 EADVYMFDEPSSYLDVKQRLNAAQIIRSLLA-PTKYVICVEHDLS-VLDYLSDFVCIIYGVPSV 300 (608)
T ss_dssp CCSEEEEECTTTTCCHHHHHHHHHHHHGGGT-TTCEEEEECSCHH-HHHHHCSEEEEEESCTTT
T ss_pred CCCEEEEECcccCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCHH-HHHHhCCEEEEEeCCccc
Confidence 9999999999999999999975 5899999999998 588999999999887543
|
| >2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=2.6e-22 Score=232.21 Aligned_cols=198 Identities=19% Similarity=0.230 Sum_probs=136.4
Q ss_pred cceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHH-HHcCCC-------CC-
Q 006897 54 TCKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRI-ISGRVR-------DQ- 124 (627)
Q Consensus 54 ~~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~-L~Gl~~-------~~- 124 (627)
...|+++|+++ .+|+||||+|++||++||+|+||||||||++. |+|+++ |.
T Consensus 500 ~~~L~v~~l~~--------------------~~L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~g~l~~~~g~~~~~~ 559 (842)
T 2vf7_A 500 AGWLELNGVTR--------------------NNLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVDALAAHFGQPVNPD 559 (842)
T ss_dssp SCEEEEEEEEE--------------------TTEEEEEEEEESSSEEEEECCTTSSHHHHCCCCCHHHHHHHTTC-----
T ss_pred CceEEEEeeee--------------------cccccceEEEcCCCEEEEEcCCCcCHHHHHHHHHHHHHHHHhcCCCCcc
Confidence 34799999974 15999999999999999999999999999996 775542 20
Q ss_pred --------------CCccc-------eEEECCccCCC-h-----------hhhcc---------cEEEEcc---------
Q 006897 125 --------------DFDPR-------SITVNCHQIKK-P-----------AQLRK---------ICGFVAQ--------- 153 (627)
Q Consensus 125 --------------~~~~G-------~i~i~g~~~~~-~-----------~~~r~---------~ig~v~Q--------- 153 (627)
....| .|.++++++.. + ..+|+ .+||.++
T Consensus 560 g~~~~~~~~~~~~~~~~~G~~~~~~~~i~vdq~~i~~~~rs~~at~~~~~~~ir~~fa~~~~~r~~g~~~~~fs~n~~~g 639 (842)
T 2vf7_A 560 PEDDEDPADHTAGSARLGGDLAQITRLVRVDQKPIGRTPRSNMATYTGLFDQVRKLFAATPLAKKRGYNAGRFSFNVKGG 639 (842)
T ss_dssp ------------CCCEEEESGGGCCEEEEECSSCSCSSTTCCHHHHSSTHHHHHHHHHTSHHHHHTTCCGGGGCSSSTTT
T ss_pred ccccccccccccccccccCcccccceEEEECCeeCCCCccccchhhhhHHHHHHHHHhcChHHHhcCCcccccccccccc
Confidence 00135 68889877521 1 01111 1223222
Q ss_pred -------------CCCCC------------------------CCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCC
Q 006897 154 -------------EDNLL------------------------PLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGL 196 (627)
Q Consensus 154 -------------~~~l~------------------------~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL 196 (627)
+..++ ...++.|++.+...-...-.......+++.++|+.+||
T Consensus 640 ~c~~c~g~G~~~~~~~f~~~v~~~c~~c~G~r~~~e~l~v~~~~~si~e~l~ltv~e~l~~~~~~~~~~~~~~~L~~~gL 719 (842)
T 2vf7_A 640 RCEHCQGEGWVMVELLFLPSVYAPCPVCHGTRYNAETLEVEYRGKNIADVLALTVDEAHDFFADESAIFRALDTLREVGL 719 (842)
T ss_dssp BCTTTTTCSEEEETTCSSSCEEEECTTTTTCCBCTTGGGCCBTTBCHHHHHTCBHHHHHHHTTTSHHHHHHHHHHHHTTC
T ss_pred ccccccCCCccchhhhcCCccceecccccCcccchhhHhhhhcCCCHHHHHhccHHHHHHHhhcchHHHHHHHHHHHcCC
Confidence 11111 22344444422110000000011223578899999999
Q ss_pred ccc-----cCCcCCccccC---------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHH
Q 006897 197 THV-----AGSFVGDEENR---------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRIL 250 (627)
Q Consensus 197 ~~~-----~~~~~gGe~qr---------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~ 250 (627)
... ..+++|||+|| ||+|||+.++.+++++|+++++ .|.|||++|||++ ++
T Consensus 720 ~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~-~G~tVIvisHdl~-~i- 796 (842)
T 2vf7_A 720 GYLRLGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVD-AGNTVIAVEHKMQ-VV- 796 (842)
T ss_dssp TTSBTTCCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHH-TTCEEEEECCCHH-HH-
T ss_pred CcccccCCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEcCCHH-HH-
Confidence 753 24567999988 9999999999999999999986 5999999999998 36
Q ss_pred HHhhhheee------cCCeEEeeCCHHHHH
Q 006897 251 QYISKFLIL------SRGSVVHYGSLELLE 274 (627)
Q Consensus 251 ~~~D~i~vL------~~G~iv~~G~~~~~~ 274 (627)
+.||+|++| ++|++++.|+++++.
T Consensus 797 ~~aDrii~L~p~~g~~~G~Iv~~g~~~el~ 826 (842)
T 2vf7_A 797 AASDWVLDIGPGAGEDGGRLVAQGTPAEVA 826 (842)
T ss_dssp TTCSEEEEECSSSGGGCCSEEEEECHHHHT
T ss_pred HhCCEEEEECCCCCCCCCEEEEEcCHHHHH
Confidence 789999999 799999999998764
|
| >3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.5e-21 Score=227.76 Aligned_cols=180 Identities=26% Similarity=0.357 Sum_probs=133.3
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHH---------HHHHcCCCCCCC---cc------ceEEECCccCCC-h----
Q 006897 85 HILKSVSFEARDSEILAVVGPSGTGKSSLL---------RIISGRVRDQDF---DP------RSITVNCHQIKK-P---- 141 (627)
Q Consensus 85 ~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl---------~~L~Gl~~~~~~---~~------G~i~i~g~~~~~-~---- 141 (627)
..|+|||++|++||+++|+||||||||||+ +.+.|...+... .. +.+.++..++.. +
T Consensus 598 ~~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl~~~l~~~l~~~l~~~~~~~g~~~~~~G~~~i~~~i~idq~pig~~~rs~~ 677 (916)
T 3pih_A 598 NNLKNIDVEIPLGVFVCVTGVSGSGKSSLVMETLYPALMNLLHKTKLPAGEFDSIEGHENIDKMIAIDQSPIGRTPRSNP 677 (916)
T ss_dssp TTCCSEEEEEESSSEEEEECSTTSSHHHHHHHTHHHHHHHHHHCCCCCCCCCSEEECGGGCCEEEEECSCCCCCCTTCCH
T ss_pred ccccccceEEcCCcEEEEEccCCCChhhhHHHHHHHHHHHHhccccccccccccccccccccceEeeccccccccccccc
Confidence 369999999999999999999999999997 444444332210 01 234454443210 0
Q ss_pred h--------------------------------------hhcccEEEEccCCCCCC------------------------
Q 006897 142 A--------------------------------------QLRKICGFVAQEDNLLP------------------------ 159 (627)
Q Consensus 142 ~--------------------------------------~~r~~ig~v~Q~~~l~~------------------------ 159 (627)
. ...+..|++.|+..++|
T Consensus 678 at~~~~~~~ir~lfa~~~~a~~~g~~~~~fs~n~~~grc~~c~g~G~i~~e~~flp~~~v~c~~c~g~r~~~e~l~i~~~ 757 (916)
T 3pih_A 678 ATYTKVFDEIRSLFAMTPAAKARGYNKSRFSFNLKGGRCEACQGQGYVKIEMLFLPDVYVECDVCKGKRYNRETLEITYK 757 (916)
T ss_dssp HHHSSHHHHHHHHHTTSHHHHHSSCCGGGGCTTSTTTBCTTTTTSSEEEECCTTSCCEEEECTTTTTSCBCTTGGGCCBT
T ss_pred cchhhhHHHHHHHhccchHHHhcccccccccccccccccccccCcceEEEeeeccCcceeecccccccccchhhhhhhhc
Confidence 0 00123578887766554
Q ss_pred --------CCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCcc-----ccCCcCCccccC----------------
Q 006897 160 --------LLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTH-----VAGSFVGDEENR---------------- 210 (627)
Q Consensus 160 --------~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-----~~~~~~gGe~qr---------------- 210 (627)
.+||.|++.|... ....+++.++|+.+||.. ...+++|||+||
T Consensus 758 g~~i~~vl~~tv~eal~f~~~--------~~~~~~~~~~L~~vGL~~~~lgq~~~~LSGGErQRV~LAraL~~~p~~p~L 829 (916)
T 3pih_A 758 GKNISDILDMTVDEALEFFKN--------IPSIKRTLQVLHDVGLGYVKLGQPATTLSGGEAQRIKLASELRKRDTGRTL 829 (916)
T ss_dssp TBCHHHHHSSBHHHHHHHTTT--------CHHHHHHHHHHHHTTGGGSBTTCCSTTCCHHHHHHHHHHHHHTSCCCSSEE
T ss_pred cCCHHHHhhCCHHHHHHHHhc--------chhHHHHHHHHHHcCCchhhccCCccCCCHHHHHHHHHHHHHhhCCCCCCE
Confidence 3678888877421 123456788999999964 345778999998
Q ss_pred -----CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheee------cCCeEEeeCCHHHHHH
Q 006897 211 -----GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLIL------SRGSVVHYGSLELLEE 275 (627)
Q Consensus 211 -----PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL------~~G~iv~~G~~~~~~~ 275 (627)
||+|||+.++..+++.|+++++ .|.|||+|+||++. + +.||+|++| ++|++++.|+++++.+
T Consensus 830 LILDEPTsGLD~~~~~~L~~lL~~L~~-~G~TVIvI~HdL~~-i-~~ADrIivLgp~gg~~~G~Iv~~Gtpeel~~ 902 (916)
T 3pih_A 830 YILDEPTVGLHFEDVRKLVEVLHRLVD-RGNTVIVIEHNLDV-I-KNADHIIDLGPEGGKEGGYIVATGTPEEIAK 902 (916)
T ss_dssp EEEESTTTTCCHHHHHHHHHHHHHHHH-TTCEEEEECCCHHH-H-TTCSEEEEEESSSGGGCCEEEEEESHHHHHS
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHH-H-HhCCEEEEecCCCCCCCCEEEEEcCHHHHHh
Confidence 8999999999999999999976 58999999999973 4 569999999 8999999999998753
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.3e-22 Score=226.09 Aligned_cols=152 Identities=18% Similarity=0.228 Sum_probs=115.8
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceE-----------EECCccCCCh--hhh--cccEEEEccC----
Q 006897 94 ARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSI-----------TVNCHQIKKP--AQL--RKICGFVAQE---- 154 (627)
Q Consensus 94 i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i-----------~i~g~~~~~~--~~~--r~~ig~v~Q~---- 154 (627)
.++||++||+||||||||||+|+|+|+++|+. |+| .++|+++... ... ...+....|.
T Consensus 22 ~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~---G~i~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~ 98 (538)
T 3ozx_A 22 PKNNTILGVLGKNGVGKTTVLKILAGEIIPNF---GDPNSKVGKDEVLKRFRGKEIYNYFKELYSNELKIVHKIQYVEYA 98 (538)
T ss_dssp CCTTEEEEEECCTTSSHHHHHHHHTTSSCCCT---TCTTSCCCHHHHHHHHTTSTTHHHHHHHHTTCCCEEEECSCTTGG
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHhcCCCCCC---CccccccchhhHHhhcCCeeHHHHHHHHhhcccchhhccchhhhh
Confidence 45999999999999999999999999999974 877 5666654210 111 1234444444
Q ss_pred CCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccCC----cCCccccC------------------CC
Q 006897 155 DNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAGS----FVGDEENR------------------GI 212 (627)
Q Consensus 155 ~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~----~~gGe~qr------------------Pt 212 (627)
+.++. .++.|++... +.+++++++++.+|+.+..++ ++|||+|| ||
T Consensus 99 ~~~~~-~~v~~~l~~~-----------~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~Qrv~iA~aL~~~p~illlDEPt 166 (538)
T 3ozx_A 99 SKFLK-GTVNEILTKI-----------DERGKKDEVKELLNMTNLWNKDANILSGGGLQRLLVAASLLREADVYIFDQPS 166 (538)
T ss_dssp GTTCC-SBHHHHHHHH-----------CCSSCHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTT
T ss_pred hhhcc-CcHHHHhhcc-----------hhHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCc
Confidence 33333 3888866421 112357789999999876654 55999999 99
Q ss_pred CCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCe
Q 006897 213 SGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGS 263 (627)
Q Consensus 213 sgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~ 263 (627)
++||+.++..+.+.|++++ + |+|||++|||++ ++..+||+|++|++|.
T Consensus 167 s~LD~~~~~~l~~~l~~l~-~-g~tii~vsHdl~-~~~~~~d~i~vl~~~~ 214 (538)
T 3ozx_A 167 SYLDVRERMNMAKAIRELL-K-NKYVIVVDHDLI-VLDYLTDLIHIIYGES 214 (538)
T ss_dssp TTCCHHHHHHHHHHHHHHC-T-TSEEEEECSCHH-HHHHHCSEEEEEEEET
T ss_pred ccCCHHHHHHHHHHHHHHh-C-CCEEEEEEeChH-HHHhhCCEEEEecCCc
Confidence 9999999999999999995 3 899999999998 5899999999998754
|
| >2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A | Back alignment and structure |
|---|
Probab=99.85 E-value=9.4e-22 Score=227.91 Aligned_cols=189 Identities=24% Similarity=0.333 Sum_probs=138.9
Q ss_pred ceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHH-cCC---------CCC
Q 006897 55 CKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIIS-GRV---------RDQ 124 (627)
Q Consensus 55 ~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~-Gl~---------~~~ 124 (627)
..|+++|++. .+|+||||+|++||++||+|+||||||||+++|. |.+ .+.
T Consensus 628 ~~L~v~~l~~--------------------~~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll~g~l~~~l~~~~~~~G 687 (972)
T 2r6f_A 628 RWLEVVGARE--------------------HNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPG 687 (972)
T ss_dssp CEEEEEEECS--------------------SSCCSEEEEEESSSEEECCBCTTSSHHHHHTTTHHHHHHHHHHCCCCCCC
T ss_pred eEEEEecCcc--------------------cccccceEEEcCCCEEEEEcCCCCCHHHHHHHHHHHHHHHhhcCCCCCCC
Confidence 4688988752 2599999999999999999999999999999853 221 121
Q ss_pred CC--ccc------eEEECCccCCC-h----h-------hh---------cccEEEEccCCCCC-----------------
Q 006897 125 DF--DPR------SITVNCHQIKK-P----A-------QL---------RKICGFVAQEDNLL----------------- 158 (627)
Q Consensus 125 ~~--~~G------~i~i~g~~~~~-~----~-------~~---------r~~ig~v~Q~~~l~----------------- 158 (627)
.. ..| .|.+++.++.. + . .. .+.+||++|...+.
T Consensus 688 ~~~~i~G~~~~~~~I~idq~pig~~~rs~paty~~v~d~ir~lfa~~~ear~~Gy~~~~fsfn~~ggrC~~C~g~G~i~~ 767 (972)
T 2r6f_A 688 EHRDIRGLEHLDKVIDIDQSPIGRTPRSNPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKI 767 (972)
T ss_dssp SCSEEECGGGCSEEEEECSSCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHHTTCCTTTTCTTSTTTBCTTTTTCSEEEE
T ss_pred ceeeeccccccceEEEEcCcccccCccccchhhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceee
Confidence 10 012 47888877521 1 0 01 13457887753221
Q ss_pred -----C--------------------------------CCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCcc-cc
Q 006897 159 -----P--------------------------------LLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTH-VA 200 (627)
Q Consensus 159 -----~--------------------------------~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~ 200 (627)
+ .+||.|++.|.. .. . ..+++.++|+.+||.. ..
T Consensus 768 em~fl~~v~~~ce~c~G~r~~~e~l~v~~~g~sI~dvl~ltv~e~l~~~~-----~~-~--~~~~~~~~L~~~gL~~~~l 839 (972)
T 2r6f_A 768 EMHFLPDVYVPCEVCHGKRYNRETLEVTYKGKNIAEVLDMTVEDALDFFA-----SI-P--KIKRKLETLYDVGLGYMKL 839 (972)
T ss_dssp CCSSSCCEEEECTTTTTCCBCTTGGGCCBTTBCHHHHHTSBHHHHHHHTC-----SC-H--HHHHHHHHHHHTTCSSSBT
T ss_pred ehhccccccccccccccccccchhhhhhccCCCHHHhhhcCHHHHHHHHh-----cc-h--hHHHHHHHHHHcCCCcccc
Confidence 1 357777776632 11 1 1234678999999976 33
Q ss_pred ----CCcCCccccC---------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhh
Q 006897 201 ----GSFVGDEENR---------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISK 255 (627)
Q Consensus 201 ----~~~~gGe~qr---------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~ 255 (627)
.+++|||+|| ||+|||+.++.+++++|+++++ .|.|||++|||++. + +.||+
T Consensus 840 ~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~-~G~TVIvisHdl~~-i-~~aDr 916 (972)
T 2r6f_A 840 GQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVD-NGDTVLVIEHNLDV-I-KTADY 916 (972)
T ss_dssp TCCGGGCCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHH-TTCEEEEECCCHHH-H-TTCSE
T ss_pred cCchhhCCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEcCCHHH-H-HhCCE
Confidence 4567999998 9999999999999999999976 58999999999973 4 68999
Q ss_pred heee------cCCeEEeeCCHHHHH
Q 006897 256 FLIL------SRGSVVHYGSLELLE 274 (627)
Q Consensus 256 i~vL------~~G~iv~~G~~~~~~ 274 (627)
+++| ++|++++.|+++++.
T Consensus 917 IivL~p~gG~~~G~Iv~~g~~~el~ 941 (972)
T 2r6f_A 917 IIDLGPEGGDRGGQIVAVGTPEEVA 941 (972)
T ss_dssp EEEECSSSTTSCCSEEEEESHHHHH
T ss_pred EEEEcCCCCCCCCEEEEecCHHHHH
Confidence 9999 789999999998775
|
| >2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.84 E-value=8.2e-25 Score=239.18 Aligned_cols=166 Identities=13% Similarity=0.157 Sum_probs=127.6
Q ss_pred eceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccc-e-EEECCccCCChhhhcccEEEEccCCC---CCCCCC
Q 006897 88 KSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPR-S-ITVNCHQIKKPAQLRKICGFVAQEDN---LLPLLT 162 (627)
Q Consensus 88 ~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G-~-i~i~g~~~~~~~~~r~~ig~v~Q~~~---l~~~lT 162 (627)
+++|+++++||+++|+||||||||||+|+|+|+.+|+ .| + |.++|. .++.++|+||+.. +.+.+|
T Consensus 129 ~~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~---~G~~pI~vdg~-------~~~~i~~vpq~~~l~~~~~~~t 198 (460)
T 2npi_A 129 EKIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKF---NAYQPLYINLD-------PQQPIFTVPGCISATPISDILD 198 (460)
T ss_dssp HHHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHH---HCCCCEEEECC-------TTSCSSSCSSCCEEEECCSCCC
T ss_pred hcCceEeCCCCEEEEECCCCCCHHHHHHHHhCccccc---CCceeEEEcCC-------ccCCeeeeccchhhcccccccc
Confidence 4799999999999999999999999999999999885 39 8 999882 2577999999974 345679
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccC--CcCCccccC-------------------------CCCCC
Q 006897 163 VKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAG--SFVGDEENR-------------------------GISGL 215 (627)
Q Consensus 163 V~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~--~~~gGe~qr-------------------------PtsgL 215 (627)
|+||+ ++.... .+. ..++++.++++.+|+++..+ +++|||+|| ||++|
T Consensus 199 v~eni-~~~~~~-~~~---~~~~~~~~ll~~~gl~~~~~~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEpPts~L 273 (460)
T 2npi_A 199 AQLPT-WGQSLT-SGA---TLLHNKQPMVKNFGLERINENKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPSISQL 273 (460)
T ss_dssp TTCTT-CSCBCB-SSC---CSSCCBCCEECCCCSSSGGGCHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECCCGGGS
T ss_pred hhhhh-cccccc-cCc---chHHHHHHHHHHhCCCcccchhhhhHHHHHHHHHHHHHHhccCcccCcceEEEeCCccccc
Confidence 99998 653211 111 11234566788888876654 445888876 79999
Q ss_pred CHHHHHHHHHHHHHHHHcCCCEEEEEccCcc--H---HHHHHhhh-----heeec-CCeEEeeCCHHHHH
Q 006897 216 DSTSALQVIELLASMAKAKQRTVVLSIHQPS--Y---RILQYISK-----FLILS-RGSVVHYGSLELLE 274 (627)
Q Consensus 216 D~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~--~---~i~~~~D~-----i~vL~-~G~iv~~G~~~~~~ 274 (627)
|+. ...+.++++ +.++|+|+++|+.+ . ++.++||| |++|+ +|+++ .|+++++.
T Consensus 274 D~~-~~~l~~l~~----~~~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k~G~iv-~g~~~~~~ 337 (460)
T 2npi_A 274 DEN-LAELHHIIE----KLNVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGVS-AVDDVYKR 337 (460)
T ss_dssp CSS-CHHHHHHHH----HTTCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEECCCTTCC-CCCHHHHH
T ss_pred Chh-HHHHHHHHH----HhCCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEeCCCcEE-ECCHHHHh
Confidence 998 444444443 45789999999987 2 36689999 99999 99999 99987663
|
| >1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A | Back alignment and structure |
|---|
Probab=99.82 E-value=2.5e-23 Score=204.15 Aligned_cols=172 Identities=12% Similarity=0.089 Sum_probs=110.1
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCccCCChhhhcccEEEEccCCCCCCCC
Q 006897 82 VPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKKPAQLRKICGFVAQEDNLLPLL 161 (627)
Q Consensus 82 ~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~~~~~~~~r~~ig~v~Q~~~l~~~l 161 (627)
+...+++| .++++||+++|+||||||||||+|+|+|+++... +.+.+.+.+. ....++.++|+||++.+++.+
T Consensus 7 ~~~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~~i~---~~~~~~~~~~--~~~~~~~i~~~~q~~~~~~~~ 79 (207)
T 1znw_A 7 DTKPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIPNLH---FSVSATTRAP--RPGEVDGVDYHFIDPTRFQQL 79 (207)
T ss_dssp --------------CCCEEEEECSTTSSHHHHHHHHHHHSTTCE---ECCCEESSCC--CTTCCBTTTBEECCHHHHHHH
T ss_pred CCCcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCCceE---EcccccccCC--cccccCCCeeEecCHHHHHHH
Confidence 34568999 7999999999999999999999999999985221 2222222221 122356799999998888888
Q ss_pred CHHHHHHHHHHh----cCCCCCHHHHHHHHHHH------HHHcCCccccCCcCC-------ccc----cCCCCCC----C
Q 006897 162 TVKETLMFSANF----RLKGMSHKEKEDRVESL------MDELGLTHVAGSFVG-------DEE----NRGISGL----D 216 (627)
Q Consensus 162 TV~e~l~~~~~~----~~~~~~~~~~~~~v~~~------l~~lgL~~~~~~~~g-------Ge~----qrPtsgL----D 216 (627)
|+.|++...... ...+.++++.++++++. ++.+|+.+..++..+ .+. ..|++|+ |
T Consensus 80 ~~~~~l~~~~~~~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~lS~l~~~p~~~~LDep~~~l~~~~d 159 (207)
T 1znw_A 80 IDQGELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMPEAVTVFLAPPSWQDLQARLIGRGTETA 159 (207)
T ss_dssp HHTTCEEEEEEEGGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHHCTTSEEEEEECSCHHHHHHHHHTTSCSCH
T ss_pred HhcCCceeehhhcCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHhcCCcEEEEEECCCHHHHHHHHHhcCCCCH
Confidence 888776421100 11123445556666665 666666554443321 111 2277886 7
Q ss_pred HHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecC
Q 006897 217 STSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSR 261 (627)
Q Consensus 217 ~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~ 261 (627)
+..+.++.+.+++++++.|.|+|++|||++ ++.++|||+++|.+
T Consensus 160 ~~~~~~l~~~l~~l~~~~g~tvi~vtHdl~-~~~~~~d~i~~l~~ 203 (207)
T 1znw_A 160 DVIQRRLDTARIELAAQGDFDKVVVNRRLE-SACAELVSLLVGTA 203 (207)
T ss_dssp HHHHHHHHHHHHHHHGGGGSSEEEECSSHH-HHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHhhhccCcEEEECCCHH-HHHHHHHHHHHhcc
Confidence 889999999999998767899999999998 58999999999853
|
| >2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.5e-23 Score=228.11 Aligned_cols=185 Identities=12% Similarity=0.088 Sum_probs=139.9
Q ss_pred ceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEEC
Q 006897 55 CKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVN 134 (627)
Q Consensus 55 ~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~ 134 (627)
..++++|+++.|.. +.++|+++ |++.+||+++|+||||||||||+++|+|+.+++ .|.|.++
T Consensus 130 ~~l~~~~v~~~~~t--------------g~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~---~G~i~~~ 191 (438)
T 2dpy_A 130 NPLQRTPIEHVLDT--------------GVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRAD---VIVVGLI 191 (438)
T ss_dssp CTTTSCCCCSBCCC--------------SCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCS---EEEEEEE
T ss_pred CceEEeccceecCC--------------CceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCC---eEEEEEe
Confidence 35789999988831 34699999 999999999999999999999999999999885 3999999
Q ss_pred Cc---cCCC-------hhhhcccEEEEccC-CCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccCCc
Q 006897 135 CH---QIKK-------PAQLRKICGFVAQE-DNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAGSF 203 (627)
Q Consensus 135 g~---~~~~-------~~~~r~~ig~v~Q~-~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ 203 (627)
|+ ++.+ ...+++.++|++|+ ..+++.+|+.+|+.+.+...... .+++..++ +...++
T Consensus 192 G~r~~ev~~~~~~~~~~~~l~r~i~~v~q~~~~~~~~~~v~~~~~~~ae~~~~~------~~~v~~~l------d~l~~l 259 (438)
T 2dpy_A 192 GERGREVKDFIENILGPDGRARSVVIAAPADVSPLLRMQGAAYATRIAEDFRDR------GQHVLLIM------DSLTRY 259 (438)
T ss_dssp SCCHHHHHHHHHTTTHHHHHHTEEEEEECTTSCHHHHHHHHHHHHHHHHHHHTT------TCEEEEEE------ECHHHH
T ss_pred ceecHHHHHHHHhhccccccCceEEEEECCCCCHHHHHHHHHHHHHHHHHHHhC------CCCHHHHH------HhHHHH
Confidence 98 4321 12467789999995 56677889999998875431100 00000000 111223
Q ss_pred CCccccC-------C--CCCCCHHHHHHHHHHHHHHHH---cCCC-----EEEEEccCccHHHHHHhhhheeecCCeEEe
Q 006897 204 VGDEENR-------G--ISGLDSTSALQVIELLASMAK---AKQR-----TVVLSIHQPSYRILQYISKFLILSRGSVVH 266 (627)
Q Consensus 204 ~gGe~qr-------P--tsgLD~~~~~~i~~~L~~l~~---~~g~-----Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~ 266 (627)
++|+ || | ++|||+....++.++++++.+ +.|. ||++++||++ ..+||++++|.+|+++.
T Consensus 260 S~g~-qrvslAl~~p~~t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~---~~iad~v~~l~dG~Ivl 335 (438)
T 2dpy_A 260 AMAQ-REIALAIGEPPATKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ---DPIADSARAILDGHIVL 335 (438)
T ss_dssp HHHH-HHHHHHTTCCCCSSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC---CHHHHHHHHHSSEEEEE
T ss_pred HHHH-HHHHHHhCCCcccccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc---chhhceEEEEeCcEEEE
Confidence 3555 33 3 899999999999999999865 2364 9999999997 47899999999999999
Q ss_pred eCCHHHH
Q 006897 267 YGSLELL 273 (627)
Q Consensus 267 ~G~~~~~ 273 (627)
.|+++++
T Consensus 336 ~~~~~~~ 342 (438)
T 2dpy_A 336 SRRLAEA 342 (438)
T ss_dssp CHHHHHT
T ss_pred eCCHHHc
Confidence 9887654
|
| >4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.6e-19 Score=195.55 Aligned_cols=177 Identities=17% Similarity=0.203 Sum_probs=126.1
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC-----------------------------------CCccc
Q 006897 85 HILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQ-----------------------------------DFDPR 129 (627)
Q Consensus 85 ~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~-----------------------------------~~~~G 129 (627)
.+++++|+++++| +++|+|||||||||||++|.++..+. ....|
T Consensus 49 ~~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~~~ 127 (415)
T 4aby_A 49 ATITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGRG 127 (415)
T ss_dssp TTEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSCE
T ss_pred cceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCCce
Confidence 3699999999999 99999999999999999998776421 01248
Q ss_pred eEEECCccCCC--hhhhcc-cEEEEccCCCCCCCCCHHHHHHHHHHhc-----------------------CCC-C----
Q 006897 130 SITVNCHQIKK--PAQLRK-ICGFVAQEDNLLPLLTVKETLMFSANFR-----------------------LKG-M---- 178 (627)
Q Consensus 130 ~i~i~g~~~~~--~~~~r~-~ig~v~Q~~~l~~~lTV~e~l~~~~~~~-----------------------~~~-~---- 178 (627)
.+.+||+++.. ..++.+ .+++++|++.++.. +..+...|.-... ... .
T Consensus 128 ~i~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l~-~~~~~r~~ld~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~ 206 (415)
T 4aby_A 128 AARLSGEVVSVRELQEWAQGRLTIHWQHSAVSLL-SPANQRGLLDRRVTKEAQAYAAAHAAWREAVSRLERLQASESSKH 206 (415)
T ss_dssp EEEETTEEECHHHHHHHHTTTEEEETTTCTTTTS-SHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred EEEECCEECCHHHHHHHHhhceEEecCccccccc-CHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Confidence 89999998642 233443 48999999876543 5554444321100 000 0
Q ss_pred ------------------------------CHHHHHHHHHHHHHHcCCccc-----------------------c--C--
Q 006897 179 ------------------------------SHKEKEDRVESLMDELGLTHV-----------------------A--G-- 201 (627)
Q Consensus 179 ------------------------------~~~~~~~~v~~~l~~lgL~~~-----------------------~--~-- 201 (627)
..+...+.+.+.++.+++.+. . +
T Consensus 207 ~~~i~~~~~l~~~~~~l~~~~~~l~~~R~~~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 286 (415)
T 4aby_A 207 PTSLVPRGSVDALHAELLKVGQALDAAREREAEPLVDSLLAVIRELGMPHARMEFALSALAEPAAYGLSDVLLRFSANPG 286 (415)
T ss_dssp ---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCEEEEEEEEEEEEETTEEEEEEEEEESSSS
T ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeeccCCCCCCCceEEEEEEcCCC
Confidence 000112345556666665420 0 1
Q ss_pred -------C-cCCccccC--------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHh
Q 006897 202 -------S-FVGDEENR--------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYI 253 (627)
Q Consensus 202 -------~-~~gGe~qr--------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~ 253 (627)
. ++|||+|| ||+|||+.++..+.+.|++++ .|.|||+|||+++ +...|
T Consensus 287 ~~~~~~~~~lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~--~~~~vi~itH~~~--~~~~~ 362 (415)
T 4aby_A 287 EELGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA--DTRQVLVVTHLAQ--IAARA 362 (415)
T ss_dssp CCCCBGGGCSCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHT--TTSEEEEECSCHH--HHTTC
T ss_pred CcccchhhhcCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh--CCCEEEEEeCcHH--HHhhc
Confidence 0 57999987 899999999999999999996 3899999999985 56789
Q ss_pred hhheee----cCCeEEee
Q 006897 254 SKFLIL----SRGSVVHY 267 (627)
Q Consensus 254 D~i~vL----~~G~iv~~ 267 (627)
|++++| ++|+++..
T Consensus 363 d~i~~l~k~~~~G~~~~~ 380 (415)
T 4aby_A 363 HHHYKVEKQVEDGRTVSH 380 (415)
T ss_dssp SEEEEEEEEEETTEEEEE
T ss_pred CeEEEEEEeccCCceEEE
Confidence 999999 99998765
|
| >2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=1.2e-22 Score=209.87 Aligned_cols=155 Identities=14% Similarity=0.119 Sum_probs=116.6
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
.|+++||++.|. ..+|+|+|++|++||+++|+||||||||||+++|+|++ + |+|.
T Consensus 101 ~i~~~~vs~~y~----------------~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~---~---G~I~--- 155 (305)
T 2v9p_A 101 FFNYQNIELITF----------------INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL---G---GSVL--- 155 (305)
T ss_dssp HHHHTTCCHHHH----------------HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH---T---CEEE---
T ss_pred eEEEEEEEEEcC----------------hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc---C---ceEE---
Confidence 588999999882 35899999999999999999999999999999999998 2 8873
Q ss_pred ccCCChhhhcccEEEEccCCCCCCCCCHHH-HHHHHHHhcCCCCCHHHHHHHHHHHHHHc---CCccccCCcCCccccC-
Q 006897 136 HQIKKPAQLRKICGFVAQEDNLLPLLTVKE-TLMFSANFRLKGMSHKEKEDRVESLMDEL---GLTHVAGSFVGDEENR- 210 (627)
Q Consensus 136 ~~~~~~~~~r~~ig~v~Q~~~l~~~lTV~e-~l~~~~~~~~~~~~~~~~~~~v~~~l~~l---gL~~~~~~~~gGe~qr- 210 (627)
+|++|++.+++. |++| |+.+.. ..+. .+.+.++.+ |++ ...++||||||
T Consensus 156 -------------~~v~q~~~lf~~-ti~~~ni~~~~-----~~~~-----~~~~~i~~~L~~gld--g~~LSgGqkQRA 209 (305)
T 2v9p_A 156 -------------SFANHKSHFWLA-SLADTRAALVD-----DATH-----ACWRYFDTYLRNALD--GYPVSIDRKHKA 209 (305)
T ss_dssp -------------CGGGTTSGGGGG-GGTTCSCEEEE-----EECH-----HHHHHHHHTTTGGGG--TCCEECCCSSCC
T ss_pred -------------EEecCccccccc-cHHHHhhccCc-----cccH-----HHHHHHHHHhHccCC--ccCcCHHHHHHH
Confidence 456777777764 7776 776531 1111 344455542 333 45788999998
Q ss_pred ------C----CCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeCCHHHHHHHHHh
Q 006897 211 ------G----ISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGSLELLEETINN 279 (627)
Q Consensus 211 ------P----tsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~~~~~~ 279 (627)
| |++||+.++..+.. .+|+++ ..+.||+| +|++|++++.|+++++...+.+
T Consensus 210 RAll~~p~iLlTs~LD~~~~~~i~~---------------ltH~~~--~~~~aD~i-vl~~G~iv~~g~~~el~~~y~~ 270 (305)
T 2v9p_A 210 AVQIKAPPLLVTSNIDVQAEDRYLY---------------LHSRVQ--TFRFEQPC-TDESGEQPFNITDADWKSFFVR 270 (305)
T ss_dssp CCEECCCCEEEEESSCSTTCGGGGG---------------GTTTEE--EEECCCCC-CCC---CCCCCCHHHHHHHHHH
T ss_pred HHHhCCCCEEEECCCCHHHHHHHHH---------------HhCCHH--HHHhCCEE-EEeCCEEEEeCCHHHHHHHHHH
Confidence 2 79999999888752 189987 35789999 9999999999999988544443
|
| >2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=1.4e-19 Score=191.06 Aligned_cols=180 Identities=13% Similarity=0.142 Sum_probs=125.4
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
.++++|+++.|.. +..+|+++ |+|.+||+++|+||||||||||+++|+|+.+|+ .|.+.+.|
T Consensus 45 ~i~~~~l~~~~~t--------------g~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~---~g~i~~~G 106 (347)
T 2obl_A 45 PLLRQVIDQPFIL--------------GVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASAD---IIVLALIG 106 (347)
T ss_dssp STTCCCCCSEECC--------------SCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCS---EEEEEEES
T ss_pred CeeecccceecCC--------------CCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCC---EEEEEEec
Confidence 5789999999941 34699999 999999999999999999999999999999885 39999888
Q ss_pred ccCCC---------hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCc-----cccC
Q 006897 136 HQIKK---------PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLT-----HVAG 201 (627)
Q Consensus 136 ~~~~~---------~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-----~~~~ 201 (627)
++..+ ...+++.+.+++|.+. +..+.+.-.... ..+.+.+...+-+ +...
T Consensus 107 ~~~~ev~~~i~~~~~~~~~~~v~~~~~~~~-----~~~~r~~~~~~~-----------~~~ae~~~~~~~~vl~~ld~~~ 170 (347)
T 2obl_A 107 ERGREVNEFLALLPQSTLSKCVLVVTTSDR-----PALERMKAAFTA-----------TTIAEYFRDQGKNVLLMMDSVT 170 (347)
T ss_dssp CCHHHHHHHHTTSCHHHHTTEEEEEECTTS-----CHHHHHHHHHHH-----------HHHHHHHHTTTCEEEEEEETHH
T ss_pred ccHHHHHHHHHhhhhhhhhceEEEEECCCC-----CHHHHHHHHHHH-----------HHHHHHHHhccccHHHHHhhHH
Confidence 65211 1124556888887542 222322211000 0000111100100 1111
Q ss_pred CcCCccccC--------C-CCCCCHHHHHHHHHHHHHHHH-cCCC-----EEEEEccCccHHHHHHhhhheeecCCeEEe
Q 006897 202 SFVGDEENR--------G-ISGLDSTSALQVIELLASMAK-AKQR-----TVVLSIHQPSYRILQYISKFLILSRGSVVH 266 (627)
Q Consensus 202 ~~~gGe~qr--------P-tsgLD~~~~~~i~~~L~~l~~-~~g~-----Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~ 266 (627)
++++|+ || | ++|||+....++.++++++.+ +.|. ||+++|||++ ..+||++++|.+|+++.
T Consensus 171 ~lS~g~-r~v~lal~~p~~t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~---~~i~d~v~~i~dG~Ivl 246 (347)
T 2obl_A 171 RYARAA-RDVGLASGEPDVRGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN---DPIGDEVRSILDGHIVL 246 (347)
T ss_dssp HHHHHH-HHHHHHTTCCCCBTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC---CHHHHHHHHHCSEEEEB
T ss_pred HHHHHH-HHHHHHcCCCCcccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC---ChhhhheEEeeCcEEEE
Confidence 223444 32 3 699999999999999999864 4577 9999999998 47899999999999999
Q ss_pred eCCHHHH
Q 006897 267 YGSLELL 273 (627)
Q Consensus 267 ~G~~~~~ 273 (627)
+++.++.
T Consensus 247 ~~~l~~~ 253 (347)
T 2obl_A 247 TRELAEE 253 (347)
T ss_dssp CHHHHTT
T ss_pred eCCHHHc
Confidence 8877654
|
| >3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.71 E-value=1e-19 Score=178.64 Aligned_cols=126 Identities=17% Similarity=0.257 Sum_probs=85.5
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCccCC-ChhhhcccEEEEccCCCCCCCC
Q 006897 83 PLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIK-KPAQLRKICGFVAQEDNLLPLL 161 (627)
Q Consensus 83 ~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~~~-~~~~~r~~ig~v~Q~~~l~~~l 161 (627)
.+.+|+|| ++||+++|+||||||||||+|+|+|+ +|++ |+|.. .++. .....++.+|||||++
T Consensus 12 ~~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~---G~I~~--~~~~~~~~~~~~~ig~v~q~~------ 75 (208)
T 3b85_A 12 QKHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQS---KQVSR--IILTRPAVEAGEKLGFLPGTL------ 75 (208)
T ss_dssp HHHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HHHT---TSCSE--EEEEECSCCTTCCCCSSCC--------
T ss_pred HHHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CCcC---Ceeee--EEecCCchhhhcceEEecCCH------
Confidence 45699996 89999999999999999999999999 8864 77732 1111 1124567899999986
Q ss_pred CHHHHH-HHHHHh--cCCCCCHHHHHHHHHHHHHHcCCccccCCcCCccccC------------------CCCCCCHHHH
Q 006897 162 TVKETL-MFSANF--RLKGMSHKEKEDRVESLMDELGLTHVAGSFVGDEENR------------------GISGLDSTSA 220 (627)
Q Consensus 162 TV~e~l-~~~~~~--~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~gGe~qr------------------PtsgLD~~~~ 220 (627)
+||+ .+.... ..... ...++++++++. |+ ||+|| ||+| ++
T Consensus 76 --~enl~~~~~~~~~~~~~~---~~~~~~~~~l~~-gl---------Gq~qrv~lAraL~~~p~lllLDEPts~----~~ 136 (208)
T 3b85_A 76 --NEKIDPYLRPLHDALRDM---VEPEVIPKLMEA-GI---------VEVAPLAYMRGRTLNDAFVILDEAQNT----TP 136 (208)
T ss_dssp ------CTTTHHHHHHHTTT---SCTTHHHHHHHT-TS---------EEEEEGGGGTTCCBCSEEEEECSGGGC----CH
T ss_pred --HHHHHHHHHHHHHHHHHh---ccHHHHHHHHHh-CC---------chHHHHHHHHHHhcCCCEEEEeCCccc----cH
Confidence 3444 221100 00010 112456777776 65 88888 9999 88
Q ss_pred HHHHHHHHHHHHcCCCEEEEEccCcc
Q 006897 221 LQVIELLASMAKAKQRTVVLSIHQPS 246 (627)
Q Consensus 221 ~~i~~~L~~l~~~~g~Tii~~tH~~~ 246 (627)
..+.+.|+++ + .|+||| +|||++
T Consensus 137 ~~l~~~l~~l-~-~g~tii-vtHd~~ 159 (208)
T 3b85_A 137 AQMKMFLTRL-G-FGSKMV-VTGDIT 159 (208)
T ss_dssp HHHHHHHTTB-C-TTCEEE-EEEC--
T ss_pred HHHHHHHHHh-c-CCCEEE-EECCHH
Confidence 9999999988 4 489999 999987
|
| >1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=1.3e-19 Score=194.98 Aligned_cols=158 Identities=12% Similarity=0.140 Sum_probs=121.8
Q ss_pred cceeeceEEEEeCCe--------------------EEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCccCCChhh
Q 006897 84 LHILKSVSFEARDSE--------------------ILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKKPAQ 143 (627)
Q Consensus 84 ~~iL~~vsl~i~~Ge--------------------~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~~~~~~~ 143 (627)
+.+|+|||+++++|| ++||+||||||||||+|+|+|+++|+. |+|.++|.+..
T Consensus 36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~---GsI~~~g~~~t---- 108 (413)
T 1tq4_A 36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEE---GAAKTGVVEVT---- 108 (413)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTST---TSCCCCC--------
T ss_pred HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccC---ceEEECCeecc----
Confidence 468999999999999 999999999999999999999999864 99998886631
Q ss_pred hcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccC--CcCCc--cccC---------
Q 006897 144 LRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAG--SFVGD--EENR--------- 210 (627)
Q Consensus 144 ~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~--~~~gG--e~qr--------- 210 (627)
+ .++++|++ .++.+|+.|++.++. . +.+++++++.+++.+... .++|| ++||
T Consensus 109 -~--~~~v~q~~-~~~~ltv~D~~g~~~-------~----~~~~~~~L~~~~L~~~~~~~~lS~G~~~kqrv~la~aL~~ 173 (413)
T 1tq4_A 109 -M--ERHPYKHP-NIPNVVFWDLPGIGS-------T----NFPPDTYLEKMKFYEYDFFIIISATRFKKNDIDIAKAISM 173 (413)
T ss_dssp -C--CCEEEECS-SCTTEEEEECCCGGG-------S----SCCHHHHHHHTTGGGCSEEEEEESSCCCHHHHHHHHHHHH
T ss_pred -e--eEEecccc-ccCCeeehHhhcccc-------h----HHHHHHHHHHcCCCccCCeEEeCCCCccHHHHHHHHHHHh
Confidence 2 27899985 567889999876531 1 134778889998865321 14466 7766
Q ss_pred -------------------CCCCCCHHHHHHHHHHHHHHHH----cC----CCEEEEEccCccH-HHHHHhhhhe-eecC
Q 006897 211 -------------------GISGLDSTSALQVIELLASMAK----AK----QRTVVLSIHQPSY-RILQYISKFL-ILSR 261 (627)
Q Consensus 211 -------------------PtsgLD~~~~~~i~~~L~~l~~----~~----g~Tii~~tH~~~~-~i~~~~D~i~-vL~~ 261 (627)
||+|||+..+.++++.|+++.+ +. ..+|++++|+++. .+.++||++. .|.+
T Consensus 174 ~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpe 253 (413)
T 1tq4_A 174 MKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPI 253 (413)
T ss_dssp TTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCG
T ss_pred cCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHHHhCcc
Confidence 9999999999999999999852 22 3678899998872 2788999986 5555
Q ss_pred Ce
Q 006897 262 GS 263 (627)
Q Consensus 262 G~ 263 (627)
|+
T Consensus 254 g~ 255 (413)
T 1tq4_A 254 YK 255 (413)
T ss_dssp GG
T ss_pred ch
Confidence 54
|
| >1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=2.5e-20 Score=208.21 Aligned_cols=162 Identities=13% Similarity=0.075 Sum_probs=112.5
Q ss_pred ccceeeceEE-EEeCCeEEEEECCCCCcHHHHHHH--HHcCCCCCCCccceEEECCccCCC-hhhhcccEEEEccCCCCC
Q 006897 83 PLHILKSVSF-EARDSEILAVVGPSGTGKSSLLRI--ISGRVRDQDFDPRSITVNCHQIKK-PAQLRKICGFVAQEDNLL 158 (627)
Q Consensus 83 ~~~iL~~vsl-~i~~Ge~~aIiGpnGsGKSTLl~~--L~Gl~~~~~~~~G~i~i~g~~~~~-~~~~r~~ig~v~Q~~~l~ 158 (627)
..++|+|||+ .+++||+++|+||||||||||+++ ++|+.+|++ |.|.++|++... ....++.+||++|+....
T Consensus 24 g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~---g~i~v~g~~~~~~~~~~~~~~g~~~q~~~~~ 100 (525)
T 1tf7_A 24 MIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDE---PGVFVTFEETPQDIIKNARSFGWDLAKLVDE 100 (525)
T ss_dssp CCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCC---CEEEEESSSCHHHHHHHHGGGTCCHHHHHHT
T ss_pred CchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCC---CEEEEEEeCCHHHHHHHHHHcCCChHHhhcc
Confidence 3568999999 999999999999999999999999 789998754 999999987211 123456789999985421
Q ss_pred CCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccc----cCCcCCccccC-----CC-----CCCCHHHHHHHH
Q 006897 159 PLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHV----AGSFVGDEENR-----GI-----SGLDSTSALQVI 224 (627)
Q Consensus 159 ~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~----~~~~~gGe~qr-----Pt-----sgLD~~~~~~i~ 224 (627)
+. +.+ ..... .+ +..++++.++|++. ...++||++|| |+ ++||+..+..+.
T Consensus 101 ~~------l~~---~~~~~-~~-----~~~~~l~~~~l~~~~~~~~~~LS~g~~~~lilDe~t~~~~~~~lD~~~~~~l~ 165 (525)
T 1tf7_A 101 GK------LFI---LDASP-DP-----EGQEVVGGFDLSALIERINYAIQKYRARRVSIDSVTSVFQQYDASSVVRRELF 165 (525)
T ss_dssp TS------EEE---EECCC-CS-----SCCSCCSSHHHHHHHHHHHHHHHHHTCSEEEEECSTTTSTTTCCHHHHHHHHH
T ss_pred Cc------EEE---EecCc-cc-----chhhhhcccCHHHHHHHHHHHHHHcCCCEEEECCHHHHHHhcCCHHHHHHHHH
Confidence 11 100 00000 00 00112222222222 22334778877 55 468999999999
Q ss_pred HHHHHHHHcCCCEEEEEccCccHH--------HHHHhhhheeecCCe
Q 006897 225 ELLASMAKAKQRTVVLSIHQPSYR--------ILQYISKFLILSRGS 263 (627)
Q Consensus 225 ~~L~~l~~~~g~Tii~~tH~~~~~--------i~~~~D~i~vL~~G~ 263 (627)
++++++++ .|+|||+++|+++.. +..+||++++|++|+
T Consensus 166 ~ll~~l~~-~g~tvl~itH~~~~~~~~~~~~i~~~laD~vi~L~~~~ 211 (525)
T 1tf7_A 166 RLVARLKQ-IGATTVMTTERIEEYGPIARYGVEEFVSDNVVILRNVL 211 (525)
T ss_dssp HHHHHHHH-HTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEEEEC
T ss_pred HHHHHHHH-CCCEEEEEecCCCCccccccccceeeeeeEEEEEEEEc
Confidence 99999976 599999999999841 245699999999843
|
| >1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.64 E-value=5.1e-19 Score=175.03 Aligned_cols=164 Identities=9% Similarity=0.095 Sum_probs=99.2
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCccCCCh---hhhcccEEEEccCCCCCCCC
Q 006897 85 HILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKKP---AQLRKICGFVAQEDNLLPLL 161 (627)
Q Consensus 85 ~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~~~~~---~~~r~~ig~v~Q~~~l~~~l 161 (627)
.-|+||||++++|++++|+||||||||||+++|+|++ | |+|.+ |.++... ...++.++|++|++.+|+.+
T Consensus 11 ~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p-----G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 83 (218)
T 1z6g_A 11 SSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P-----NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDK 83 (218)
T ss_dssp -----------CCCCEEEECSTTSSHHHHHHHHHHHS-T-----TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHH
T ss_pred ccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C-----CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHh
Confidence 3699999999999999999999999999999999987 4 77888 7654221 22456799999987766543
Q ss_pred C-HHHHHHHHH-HhcCCCCCHHHHHHHHHHHHHHcCCccccCCcCCccccC-----------------------CCCCCC
Q 006897 162 T-VKETLMFSA-NFRLKGMSHKEKEDRVESLMDELGLTHVAGSFVGDEENR-----------------------GISGLD 216 (627)
Q Consensus 162 T-V~e~l~~~~-~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~gGe~qr-----------------------PtsgLD 216 (627)
+ +.+++.+.. .....+.+ .+.++++++...+.-....+.|||+|| |++++|
T Consensus 84 ~~~~~~l~~~~~~~~~~g~~----~~~i~~~l~~~~~~il~~~lsggq~qR~~i~~~~~~~~ll~~~~~~~Lde~~~~~d 159 (218)
T 1z6g_A 84 LKNEDFLEYDNYANNFYGTL----KSEYDKAKEQNKICLFEMNINGVKQLKKSTHIKNALYIFIKPPSTDVLLSRLLTRN 159 (218)
T ss_dssp HHTTCEEEEEEETTEEEEEE----HHHHHHHHHTTCEEEEEECHHHHHHHTTCSSCCSCEEEEEECSCHHHHHHHHHHTC
T ss_pred hhccchhhhhhcccccCCCc----HHHHHHHHhCCCcEEEEecHHHHHHHHHHhcCCCcEEEEEeCcCHHHHHHHHHhcC
Confidence 2 111211100 00001111 234666666544321112344777655 456788
Q ss_pred HHHHHHHHHHHHHHHHc------CCCEEEEEccCccHHHHHHhhhheeec
Q 006897 217 STSALQVIELLASMAKA------KQRTVVLSIHQPSYRILQYISKFLILS 260 (627)
Q Consensus 217 ~~~~~~i~~~L~~l~~~------~g~Tii~~tH~~~~~i~~~~D~i~vL~ 260 (627)
..+...+.+.|.+..++ .+.+.|+++|+++ ++.+.+|+++.-.
T Consensus 160 ~~~~~~i~~~l~~~~~~~~~~h~~~~d~iiv~~~~~-ea~~~~~~ii~~~ 208 (218)
T 1z6g_A 160 TENQEQIQKRMEQLNIELHEANLLNFNLSIINDDLT-LTYQQLKNYLLNS 208 (218)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHTTSCCSEEEECSSHH-HHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhhcccCCCEEEECCCHH-HHHHHHHHHHHHH
Confidence 88888888888776543 4577888999987 5788888887543
|
| >3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.63 E-value=8.7e-18 Score=174.16 Aligned_cols=156 Identities=15% Similarity=0.206 Sum_probs=105.5
Q ss_pred eeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCccCCCh------hhh--cccEEEEccCCC-C
Q 006897 87 LKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKKP------AQL--RKICGFVAQEDN-L 157 (627)
Q Consensus 87 L~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~~~~~------~~~--r~~ig~v~Q~~~-l 157 (627)
++++|+++++|++++|+||||||||||++.|+|+++|.+ |+|.++|.+.... ..+ +..++|++|++. +
T Consensus 90 ~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~---g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~ 166 (302)
T 3b9q_A 90 KTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEG---TKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKA 166 (302)
T ss_dssp CCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTT---CCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CC
T ss_pred ccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcC---CeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCcc
Confidence 467899999999999999999999999999999998854 9999999886432 122 346999999988 8
Q ss_pred CCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccCC---------------cCCccc------cCCCCCCC
Q 006897 158 LPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAGS---------------FVGDEE------NRGISGLD 216 (627)
Q Consensus 158 ~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~---------------~~gGe~------qrPtsgLD 216 (627)
+|.+|++||+.++.... . . ..+++.+|+.+..++ +....+ . ||+|||
T Consensus 167 ~~~~~v~e~l~~~~~~~-~--d--------~~lldt~gl~~~~~~~~~eLSkqr~~iaral~~~P~e~lLvLD-ptsglD 234 (302)
T 3b9q_A 167 KAATVLSKAVKRGKEEG-Y--D--------VVLCDTSGRLHTNYSLMEELIACKKAVGKIVSGAPNEILLVLD-GNTGLN 234 (302)
T ss_dssp CHHHHHHHHHHHHHHTT-C--S--------EEEECCCCCSSCCHHHHHHHHHHHHHHHTTSTTCCSEEEEEEE-GGGGGG
T ss_pred CHHHHHHHHHHHHHHcC-C--c--------chHHhcCCCCcchhHHHHHHHHHHHHHHHhhccCCCeeEEEEe-CCCCcC
Confidence 88899999999864211 0 0 011222222221111 111111 2 899999
Q ss_pred HHHHHHHHHHHHHHHHcCCCEEEEEccC---------ccHHHHHHhhhheeecCCeE
Q 006897 217 STSALQVIELLASMAKAKQRTVVLSIHQ---------PSYRILQYISKFLILSRGSV 264 (627)
Q Consensus 217 ~~~~~~i~~~L~~l~~~~g~Tii~~tH~---------~~~~i~~~~D~i~vL~~G~i 264 (627)
+..+ ++++.++.|.|+|++||. ++ .+.+..+.|.++..|+.
T Consensus 235 ~~~~------~~~~~~~~g~t~iiiThlD~~~~~g~~l~-~~~~~~~pi~~i~~Ge~ 284 (302)
T 3b9q_A 235 MLPQ------AREFNEVVGITGLILTKLDGSARGGCVVS-VVEELGIPVKFIGVGEA 284 (302)
T ss_dssp GHHH------HHHHHHHTCCCEEEEECCSSCSCTHHHHH-HHHHHCCCEEEEECSSS
T ss_pred HHHH------HHHHHHhcCCCEEEEeCCCCCCccChhee-hHHHHCCCEEEEeCCCC
Confidence 8754 345555568999999993 22 13344556788888865
|
| >3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=3.4e-16 Score=166.66 Aligned_cols=65 Identities=22% Similarity=0.379 Sum_probs=57.0
Q ss_pred ccCCcCCccccC------------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhh
Q 006897 199 VAGSFVGDEENR------------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYIS 254 (627)
Q Consensus 199 ~~~~~~gGe~qr------------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D 254 (627)
...+++|||+|| ||+|||+.++..+++.|+++++ .|+|||+||||++ ..+.||
T Consensus 276 ~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~-~g~tvi~itH~~~--~~~~~d 352 (365)
T 3qf7_A 276 PARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELER-LNKVIVFITHDRE--FSEAFD 352 (365)
T ss_dssp EGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGG-SSSEEEEEESCHH--HHTTCS
T ss_pred CchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCCEEEEEecchH--HHHhCC
Confidence 445677999987 9999999999999999999975 5999999999997 367899
Q ss_pred hheeecCCeEEe
Q 006897 255 KFLILSRGSVVH 266 (627)
Q Consensus 255 ~i~vL~~G~iv~ 266 (627)
++++|++|+++.
T Consensus 353 ~~~~l~~G~i~~ 364 (365)
T 3qf7_A 353 RKLRITGGVVVN 364 (365)
T ss_dssp CEEEEETTEEC-
T ss_pred EEEEEECCEEEe
Confidence 999999999874
|
| >2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=5.2e-16 Score=155.97 Aligned_cols=164 Identities=14% Similarity=0.130 Sum_probs=92.0
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCccCCChhhhcccEEEEccCCCCCCCC
Q 006897 82 VPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKKPAQLRKICGFVAQEDNLLPLL 161 (627)
Q Consensus 82 ~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~~~~~~~~r~~ig~v~Q~~~l~~~l 161 (627)
+++.+|+|+||++++|+++||+||||||||||+++|+|++ |.+.++ ..++.++|++|++ +++.+
T Consensus 10 ~~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l-------G~~~~~--------~~~~~i~~v~~d~-~~~~l 73 (245)
T 2jeo_A 10 GVDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL-------GQNEVE--------QRQRKVVILSQDR-FYKVL 73 (245)
T ss_dssp -------------CCSEEEEEECSTTSSHHHHHHHHHHHH-------TGGGSC--------GGGCSEEEEEGGG-GBCCC
T ss_pred CCceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh-------chhccc--------ccCCceEEEeCCc-Ccccc
Confidence 4567999999999999999999999999999999999975 322222 2467799999995 67789
Q ss_pred CHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHc--CCccccCCcCCccccCC-------------CCCCCHHHHHHHHHH
Q 006897 162 TVKETLMFSANFRLKGMSHKEKEDRVESLMDEL--GLTHVAGSFVGDEENRG-------------ISGLDSTSALQVIEL 226 (627)
Q Consensus 162 TV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~l--gL~~~~~~~~gGe~qrP-------------tsgLD~~~~~~i~~~ 226 (627)
|+.|++.+.........+.....+++.+.|+.+ +.......+++|++||- ..|+|+.....+
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~ls~g~~~r~~~~~~~~~~~~lilDg~~~~~~~~l--- 150 (245)
T 2jeo_A 74 TAEQKAKALKGQYNFDHPDAFDNDLMHRTLKNIVEGKTVEVPTYDFVTHSRLPETTVVYPADVVLFEGILVFYSQEI--- 150 (245)
T ss_dssp CHHHHHHHHTTCCCTTSGGGBCHHHHHHHHHHHHTTCCEEECCEETTTTEECSSCEEECCCSEEEEECTTTTTSHHH---
T ss_pred CHhHhhhhhccCCCCCCcccccHHHHHHHHHHHHCCCCeecccccccccCccCceEEecCCCEEEEeCccccccHHH---
Confidence 999999875322111111111234455555543 22233445668887761 135565433332
Q ss_pred HHHHHHcCCCEEEEEccCccHHHHH-HhhhheeecCCeEEeeCCHHHHHHHH
Q 006897 227 LASMAKAKQRTVVLSIHQPSYRILQ-YISKFLILSRGSVVHYGSLELLEETI 277 (627)
Q Consensus 227 L~~l~~~~g~Tii~~tH~~~~~i~~-~~D~i~vL~~G~iv~~G~~~~~~~~~ 277 (627)
.++ .+.+|++++|+.. .+.+ +++++ ++|+ +.+++.+.+
T Consensus 151 -~~~---~~~~i~v~th~~~-~~~r~~~r~~---~~G~-----~~e~~~~~~ 189 (245)
T 2jeo_A 151 -RDM---FHLRLFVDTDSDV-RLSRRVLRDV---RRGR-----DLEQILTQY 189 (245)
T ss_dssp -HTT---CSEEEEEECCHHH-HHHHHHHHHT---C--------CHHHHHHHH
T ss_pred -HHh---cCeEEEEECCHHH-HHHHHHHHHH---HcCC-----CHHHHHHHH
Confidence 222 3789999999743 3444 34444 6675 566665443
|
| >3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.62 E-value=3e-17 Score=167.50 Aligned_cols=133 Identities=20% Similarity=0.194 Sum_probs=80.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCccCCChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGM 178 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~~~~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~ 178 (627)
.++|+||||||||||+|+|+|+.+|+. |+|.++|+++. ....++.++|++|++.+++.+||.||+.|+.....
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~---G~i~~~g~~i~-~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~--- 76 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRK---ASSWNREEKIP-KTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINN--- 76 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC---------------CC-CCCSCCEEEESCC----CCEEEEECCCC--CCSBC---
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCC---CccccCCcccC-cceeeeeeEEEeecCCCcCCceEEechhhhhhccc---
Confidence 479999999999999999999998864 99999998853 23446789999999999999999999998743221
Q ss_pred CHHHHHHHHHHHHHHcCCccccCCcCCccccC---------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEcc
Q 006897 179 SHKEKEDRVESLMDELGLTHVAGSFVGDEENR---------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIH 243 (627)
Q Consensus 179 ~~~~~~~~v~~~l~~lgL~~~~~~~~gGe~qr---------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH 243 (627)
.+..+.+.+.++.--.+.....++|||+|| |+.|||+.. .+.++++.+ . .++|++.|
T Consensus 77 --~~~~~~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD----~~~l~~L~~-~-~~vI~Vi~ 148 (270)
T 3sop_A 77 --ENCWEPIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLD----LEFMKHLSK-V-VNIIPVIA 148 (270)
T ss_dssp --TTCSHHHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHH----HHHHHHHHT-T-SEEEEEET
T ss_pred --HHHHHHHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHH----HHHHHHHHh-c-CcEEEEEe
Confidence 111122333332111122345677999998 679999976 455666654 3 79999998
Q ss_pred Ccc
Q 006897 244 QPS 246 (627)
Q Consensus 244 ~~~ 246 (627)
..+
T Consensus 149 K~D 151 (270)
T 3sop_A 149 KAD 151 (270)
T ss_dssp TGG
T ss_pred ccc
Confidence 754
|
| >4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=1.3e-16 Score=151.66 Aligned_cols=122 Identities=15% Similarity=0.183 Sum_probs=80.5
Q ss_pred ceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCccCCChhhhcccEEEEccCCCC-CCCCCHHHHH
Q 006897 89 SVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKKPAQLRKICGFVAQEDNL-LPLLTVKETL 167 (627)
Q Consensus 89 ~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~~~~~~~~r~~ig~v~Q~~~l-~~~lTV~e~l 167 (627)
||||++++||+++|+||||||||||+|++.+ |...+++ ..++ |+++|++.- ...-++.+++
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~---------~~~~~~~------d~~~---g~~~~~~~~~~~~~~~~~~~ 62 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFK---------PTEVISS------DFCR---GLMSDDENDQTVTGAAFDVL 62 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSC---------GGGEEEH------HHHH---HHHCSSTTCGGGHHHHHHHH
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHcc---------CCeEEcc------HHHH---HHhcCcccchhhHHHHHHHH
Confidence 6899999999999999999999999999652 2211211 1222 667776421 1011222222
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccC---CcCCccccC------------------CCCCCCHH--------
Q 006897 168 MFSANFRLKGMSHKEKEDRVESLMDELGLTHVAG---SFVGDEENR------------------GISGLDST-------- 218 (627)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~---~~~gGe~qr------------------PtsgLD~~-------- 218 (627)
.. ... .....|.....+ ..+||++|| ||++||+.
T Consensus 63 ~~----------------~~~-~~~~~g~~~~~~~~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~ 125 (171)
T 4gp7_A 63 HY----------------IVS-KRLQLGKLTVVDATNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQ 125 (171)
T ss_dssp HH----------------HHH-HHHHTTCCEEEESCCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCC
T ss_pred HH----------------HHH-HHHhCCCeEEEECCCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCC
Confidence 11 111 112334443332 234778877 99999999
Q ss_pred --------HHHHHHHHHHHHHHcCCCEEEEEccCcc
Q 006897 219 --------SALQVIELLASMAKAKQRTVVLSIHQPS 246 (627)
Q Consensus 219 --------~~~~i~~~L~~l~~~~g~Tii~~tH~~~ 246 (627)
.+.++.+.|++++++ |.|+|++|||++
T Consensus 126 ~~~~vi~~~~~~l~~~l~~l~~~-g~tvi~vtH~~~ 160 (171)
T 4gp7_A 126 VEEYVIRKHTQQMKKSIKGLQRE-GFRYVYILNSPE 160 (171)
T ss_dssp CCHHHHHHHHHHHHHHSTTHHHH-TCSEEEEECSHH
T ss_pred CCHHHHHHHHHHhhhhhhhHHhc-CCcEEEEeCCHH
Confidence 568999999999776 999999999987
|
| >1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.58 E-value=3.5e-16 Score=163.83 Aligned_cols=58 Identities=17% Similarity=0.175 Sum_probs=46.1
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhh--eeecCCeE-EeeCCHHH
Q 006897 211 GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKF--LILSRGSV-VHYGSLEL 272 (627)
Q Consensus 211 PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i--~vL~~G~i-v~~G~~~~ 272 (627)
||++||+..+..+.+.|++++ .|.|+|++||+++ +.+.||++ ++|.+|+. +...+.++
T Consensus 250 p~~~LD~~~~~~l~~~l~~~~--~~~~vi~~tH~~~--~~~~~d~~~~v~~~~g~s~~~~~~~~~ 310 (322)
T 1e69_A 250 VDSPLDDYNAERFKRLLKENS--KHTQFIVITHNKI--VMEAADLLHGVTMVNGVSAIVPVEVEK 310 (322)
T ss_dssp CCSSCCHHHHHHHHHHHHHHT--TTSEEEEECCCTT--GGGGCSEEEEEEESSSCEEEEECCC--
T ss_pred CCCCCCHHHHHHHHHHHHHhc--CCCeEEEEECCHH--HHhhCceEEEEEEeCCEEEEEEEEcch
Confidence 999999999999999999984 3789999999975 57889987 78888754 44444444
|
| >2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.57 E-value=8.2e-17 Score=170.15 Aligned_cols=155 Identities=15% Similarity=0.225 Sum_probs=106.2
Q ss_pred eceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCccCCCh------hhh--cccEEEEccCCC-CC
Q 006897 88 KSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKKP------AQL--RKICGFVAQEDN-LL 158 (627)
Q Consensus 88 ~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~~~~~------~~~--r~~ig~v~Q~~~-l~ 158 (627)
+++|+++++|++++|+||||||||||++.|+|+++|.+ |+|.++|.++... ..+ +..++|++|++. ++
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~---G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~ 224 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEG---TKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAK 224 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTT---CCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCC
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhccccC---CEEEEecccccccchhHHHHHHHHhcCeEEEEecccccC
Confidence 56899999999999999999999999999999998753 9999999886432 122 357999999988 88
Q ss_pred CCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccCCcC---------------Cccc------cCCCCCCCH
Q 006897 159 PLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAGSFV---------------GDEE------NRGISGLDS 217 (627)
Q Consensus 159 ~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~---------------gGe~------qrPtsgLD~ 217 (627)
|.+|++||+.++..... . ..+++.+|+.+..++++ .... . ||+|||+
T Consensus 225 p~~tv~e~l~~~~~~~~---d--------~~lldt~Gl~~~~~~~~~eLSkqr~~iaral~~~P~e~lLvLD-pttglD~ 292 (359)
T 2og2_A 225 AATVLSKAVKRGKEEGY---D--------VVLCDTSGRLHTNYSLMEELIACKKAVGKIVSGAPNEILLVLD-GNTGLNM 292 (359)
T ss_dssp HHHHHHHHHHHHHHTTC---S--------EEEEECCCCSSCCHHHHHHHHHHHHHHHHHSTTCCSEEEEEEE-GGGGGGG
T ss_pred hhhhHHHHHHHHHhCCC---H--------HHHHHhcCCChhhhhHHHHHHHHHHHHHHHHhcCCCceEEEEc-CCCCCCH
Confidence 88999999998642110 0 01122222222111110 1111 2 8999998
Q ss_pred HHHHHHHHHHHHHHHcCCCEEEEEccC---------ccHHHHHHhhhheeecCCeE
Q 006897 218 TSALQVIELLASMAKAKQRTVVLSIHQ---------PSYRILQYISKFLILSRGSV 264 (627)
Q Consensus 218 ~~~~~i~~~L~~l~~~~g~Tii~~tH~---------~~~~i~~~~D~i~vL~~G~i 264 (627)
..+. +++.++.|.|+|++||. ++ .+....+.|.++..|+.
T Consensus 293 ~~~~------~~~~~~~g~t~iiiThlD~~~~gG~~ls-i~~~~~~pI~~ig~Ge~ 341 (359)
T 2og2_A 293 LPQA------REFNEVVGITGLILTKLDGSARGGCVVS-VVEELGIPVKFIGVGEA 341 (359)
T ss_dssp HHHH------HHHHHHTCCCEEEEESCTTCSCTHHHHH-HHHHHCCCEEEEECSSS
T ss_pred HHHH------HHHHHhcCCeEEEEecCcccccccHHHH-HHHHhCCCEEEEeCCCC
Confidence 7653 45555568999999993 33 13345567777777764
|
| >4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=1.2e-16 Score=158.03 Aligned_cols=164 Identities=15% Similarity=0.136 Sum_probs=99.9
Q ss_pred eeeceE-EEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCC----CccceEEECCccCCChhhhcccEEEEccCCCCCCC
Q 006897 86 ILKSVS-FEARDSEILAVVGPSGTGKSSLLRIISGRVRDQD----FDPRSITVNCHQIKKPAQLRKICGFVAQEDNLLPL 160 (627)
Q Consensus 86 iL~~vs-l~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~----~~~G~i~i~g~~~~~~~~~r~~ig~v~Q~~~l~~~ 160 (627)
.||.+- .-+++||+++|+||||||||||+++|+|...+.. ...+.+.+++.+... ++.+++++|+..+++.
T Consensus 13 ~LD~~l~ggi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~----~~~i~~~~~~~~~~~~ 88 (231)
T 4a74_A 13 SLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFR----PERIREIAQNRGLDPD 88 (231)
T ss_dssp HHHHHTTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCC----HHHHHHHHHHTTSCHH
T ss_pred hHHhHhcCCCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCC----HHHHHHHHHHcCCCHH
Confidence 344433 5799999999999999999999999999654421 123578888765211 2346677887777765
Q ss_pred CCHHHHHHHHHHhcCCCCCHHHHH---HHHHHHHHHcC--CccccCCcCCccccCCCCCCCHH-------H-----HHHH
Q 006897 161 LTVKETLMFSANFRLKGMSHKEKE---DRVESLMDELG--LTHVAGSFVGDEENRGISGLDST-------S-----ALQV 223 (627)
Q Consensus 161 lTV~e~l~~~~~~~~~~~~~~~~~---~~v~~~l~~lg--L~~~~~~~~gGe~qrPtsgLD~~-------~-----~~~i 223 (627)
|+.||+.+.. .....+.. +++.+.++..- ..+ .+.++- ..|++++|+. . ..++
T Consensus 89 -~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~llil---De~~~~l~~~~~~~~~~~~r~~~~~~~ 158 (231)
T 4a74_A 89 -EVLKHIYVAR-----AFNSNHQMLLVQQAEDKIKELLNTDRP-VKLLIV---DSLTSHFRSEYIGRGALAERQQKLAKH 158 (231)
T ss_dssp -HHHHTEEEEE-----CCSHHHHHHHHHHHHHHHHHHTTSSSC-EEEEEE---ETSSHHHHHHSCSTTHHHHHHHHHHHH
T ss_pred -HHhhcEEEEe-----cCChHHHHHHHHHHHHHHHHhcccCCc-eeEEEE---CChHHHhccccCCCcchhHHHHHHHHH
Confidence 8888876531 11222222 22333333110 100 000000 1266776662 1 3478
Q ss_pred HHHHHHHHHcCCCEEEEEccCccH---HHHHHhhhheeecCCe
Q 006897 224 IELLASMAKAKQRTVVLSIHQPSY---RILQYISKFLILSRGS 263 (627)
Q Consensus 224 ~~~L~~l~~~~g~Tii~~tH~~~~---~i~~~~D~i~vL~~G~ 263 (627)
++.|++++++.|+|||+++|+.+. .+...||++++|++|+
T Consensus 159 ~~~l~~~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~~~ 201 (231)
T 4a74_A 159 LADLHRLANLYDIAVFVTNQVQANGGHILAHSATLRVYLRKGK 201 (231)
T ss_dssp HHHHHHHHHHHTCEEEEEEECC---------CCSEEEEEEECT
T ss_pred HHHHHHHHHHCCCeEEEEeecccCcchhhHhhceEEEEEEecC
Confidence 888888887779999999995441 2678899999998753
|
| >2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A | Back alignment and structure |
|---|
Probab=99.55 E-value=6.8e-16 Score=162.03 Aligned_cols=133 Identities=11% Similarity=0.127 Sum_probs=97.3
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCccCCChhhhcccEEEEccCCCCCCCCCHHH
Q 006897 86 ILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKKPAQLRKICGFVAQEDNLLPLLTVKE 165 (627)
Q Consensus 86 iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~~~~~~~~r~~ig~v~Q~~~l~~~lTV~e 165 (627)
+++++|+.+++|++++|+||||||||||+++|+|+++|++ |.|.++|.+.......++.+++++| ...+.++
T Consensus 160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~---g~i~i~~~~e~~~~~~~~~i~~~~g-----gg~~~r~ 231 (330)
T 2pt7_A 160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEE---RIISIEDTEEIVFKHHKNYTQLFFG-----GNITSAD 231 (330)
T ss_dssp HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTS---CEEEEESSCCCCCSSCSSEEEEECB-----TTBCHHH
T ss_pred HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCC---cEEEECCeeccccccchhEEEEEeC-----CChhHHH
Confidence 7999999999999999999999999999999999998864 9999999753222335677888875 3445555
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccCCcCCccccCCCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCc
Q 006897 166 TLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAGSFVGDEENRGISGLDSTSALQVIELLASMAKAKQRTVVLSIHQP 245 (627)
Q Consensus 166 ~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~gGe~qrPtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~ 245 (627)
+|..+.. ...+.++-|| |++ .++.+.|+.+.. .+.|+|+++|++
T Consensus 232 ~la~aL~-------------------------~~p~ilildE---~~~-------~e~~~~l~~~~~-g~~tvi~t~H~~ 275 (330)
T 2pt7_A 232 CLKSCLR-------------------------MRPDRIILGE---LRS-------SEAYDFYNVLCS-GHKGTLTTLHAG 275 (330)
T ss_dssp HHHHHTT-------------------------SCCSEEEECC---CCS-------THHHHHHHHHHT-TCCCEEEEEECS
T ss_pred HHHHHhh-------------------------hCCCEEEEcC---CCh-------HHHHHHHHHHhc-CCCEEEEEEccc
Confidence 5543321 0112222233 454 235677777753 345899999999
Q ss_pred cHHHHHHhhhheeecCCeE
Q 006897 246 SYRILQYISKFLILSRGSV 264 (627)
Q Consensus 246 ~~~i~~~~D~i~vL~~G~i 264 (627)
+ +.+.|||+++|.+|+.
T Consensus 276 ~--~~~~~dri~~l~~g~~ 292 (330)
T 2pt7_A 276 S--SEEAFIRLANMSSSNS 292 (330)
T ss_dssp S--HHHHHHHHHHHHHTSG
T ss_pred H--HHHHhhhheehhcCCc
Confidence 7 5789999999998864
|
| >1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=2.8e-16 Score=162.37 Aligned_cols=167 Identities=14% Similarity=0.095 Sum_probs=103.2
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccc-eEEECCccCCChhhhcccEEEEccCCCCCCCCC
Q 006897 84 LHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPR-SITVNCHQIKKPAQLRKICGFVAQEDNLLPLLT 162 (627)
Q Consensus 84 ~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G-~i~i~g~~~~~~~~~r~~ig~v~Q~~~l~~~lT 162 (627)
..+|+++++.+++|++++|+||||||||||++.|+|...+.. | .|.+.+.+. ...++++++..+.|+..+ +
T Consensus 22 ~~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~---G~~v~~~~~e~-~~~~~~~r~~~~~~~~~~----~ 93 (296)
T 1cr0_A 22 CTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAM---GKKVGLAMLEE-SVEETAEDLIGLHNRVRL----R 93 (296)
T ss_dssp CTTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTS---CCCEEEEESSS-CHHHHHHHHHHHHTTCCG----G
T ss_pred HHHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHc---CCeEEEEeCcC-CHHHHHHHHHHHHcCCCh----h
Confidence 458999999999999999999999999999999999987753 5 675544332 233444444444444321 2
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCC--ccccCCcCCcc-ccC-----------------CCC---C---CC
Q 006897 163 VKETLMFSANFRLKGMSHKEKEDRVESLMDELGL--THVAGSFVGDE-ENR-----------------GIS---G---LD 216 (627)
Q Consensus 163 V~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL--~~~~~~~~gGe-~qr-----------------Pts---g---LD 216 (627)
+.+++..+. + +.++..+.++++++..++ .+.......++ +++ |++ + +|
T Consensus 94 ~~~~l~~~~-~-----~~~~~~~~~~~~l~~~~l~i~~~~~~~~~~~l~~~~~a~~~~~~p~llilDept~~~~~~~~~d 167 (296)
T 1cr0_A 94 QSDSLKREI-I-----ENGKFDQWFDELFGNDTFHLYDSFAEAETDRLLAKLAYMRSGLGCDVIILDHISIVVSASGESD 167 (296)
T ss_dssp GCHHHHHHH-H-----HHTHHHHHHHHHHSSSCEEEECCCCSCCHHHHHHHHHHHHHTTCCSEEEEEEEC----------
T ss_pred hccccccCC-C-----CHHHHHHHHHHHhccCCEEEECCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCCCCCCC
Confidence 334443321 1 122333444444433222 22111111122 111 666 4 56
Q ss_pred H-HHHHHHHHHHHHHHHcCCCEEEEEccCc--cH-------------------HHHHHhhhheeecCCeE
Q 006897 217 S-TSALQVIELLASMAKAKQRTVVLSIHQP--SY-------------------RILQYISKFLILSRGSV 264 (627)
Q Consensus 217 ~-~~~~~i~~~L~~l~~~~g~Tii~~tH~~--~~-------------------~i~~~~D~i~vL~~G~i 264 (627)
. ....++++.|++++++.|+|||+++|+. +. .+.+.||+|++|++|+.
T Consensus 168 ~~~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~ 237 (296)
T 1cr0_A 168 ERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQQ 237 (296)
T ss_dssp -CHHHHHHHHHHHHHHHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC--
T ss_pred HHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence 6 6778899999999887799999999995 30 37789999999998874
|
| >3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=7.3e-17 Score=167.97 Aligned_cols=138 Identities=13% Similarity=0.093 Sum_probs=99.5
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCccCCChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHh
Q 006897 94 ARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANF 173 (627)
Q Consensus 94 i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~~~~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~ 173 (627)
+++|+++||+||||||||||+++|+|+++|.. |. +.+++|+|++.+++. |++||+.+..
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~---G~---------------~~v~~v~qd~~~~~~-t~~e~~~~~~-- 145 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLARWD---HH---------------PRVDLVTTDGFLYPN-AELQRRNLMH-- 145 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHHTST---TC---------------CCEEEEEGGGGBCCH-HHHHHTTCTT--
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhccccC---CC---------------CeEEEEecCccCCcc-cHHHHHHHHH--
Confidence 89999999999999999999999999998742 32 458999999998888 9999986521
Q ss_pred cCCCCCHHHHHHHHHHHHHHcCCccc----cCCcCCccccC------------------CCCCCCHHHHHHHHHHHHHHH
Q 006897 174 RLKGMSHKEKEDRVESLMDELGLTHV----AGSFVGDEENR------------------GISGLDSTSALQVIELLASMA 231 (627)
Q Consensus 174 ~~~~~~~~~~~~~v~~~l~~lgL~~~----~~~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~ 231 (627)
..+.+.....+++.+.|+.++ ... ...++||++|| |+..+|+.. ..+.
T Consensus 146 -~~g~~~~~d~~~~~~~L~~l~-~~~~~~~~~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~~~--------~~l~ 215 (312)
T 3aez_A 146 -RKGFPESYNRRALMRFVTSVK-SGSDYACAPVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTGPT--------LMVS 215 (312)
T ss_dssp -CTTSGGGBCHHHHHHHHHHHH-TTCSCEEEEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCSS--------CCGG
T ss_pred -hcCCChHHHHHHHHHHHHHhC-CCcccCCcccCChhhhhhhhhHHHhccCCCEEEECCccccCCcch--------HHHH
Confidence 112233344567788888887 332 23556999998 788887521 1222
Q ss_pred HcCCCEEEEEccCccHHHHHHhhhheeecCCe
Q 006897 232 KAKQRTVVLSIHQPSYRILQYISKFLILSRGS 263 (627)
Q Consensus 232 ~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~ 263 (627)
+..+ ..|+++|+.+.....+.+|.+.+.+|+
T Consensus 216 ~~~D-~~I~V~a~~~~~~~R~i~R~~~~rd~~ 246 (312)
T 3aez_A 216 DLFD-FSLYVDARIEDIEQWYVSRFLAMRTTA 246 (312)
T ss_dssp GGCS-EEEEEEECHHHHHHHHHHHHHHHTTTG
T ss_pred HhcC-cEEEEECCHHHHHHHHHHHHHHHHhcc
Confidence 3334 457777877655566788988887764
|
| >1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A | Back alignment and structure |
|---|
Probab=99.52 E-value=7.5e-17 Score=151.23 Aligned_cols=79 Identities=14% Similarity=0.135 Sum_probs=66.2
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCccCCChhhhcccEEEEccCCCCCCCCC
Q 006897 83 PLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKKPAQLRKICGFVAQEDNLLPLLT 162 (627)
Q Consensus 83 ~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~~~~~~~~r~~ig~v~Q~~~l~~~lT 162 (627)
.+.+++++||++++||+++|+||||||||||+|+|+|++ |.. |+|.++|.++.+....+ . +++|+..++ .+|
T Consensus 19 ~~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~---G~V~~~g~~i~~~~~~~-~--~~~q~~~l~-~lt 90 (158)
T 1htw_A 19 KKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQ---GNVKSPTYTLVEEYNIA-G--KMIYHFDLY-RLA 90 (158)
T ss_dssp HHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCC---SCCCCCTTTCEEEEEET-T--EEEEEEECT-TCS
T ss_pred HHHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCC---CeEEECCEeeeeeccCC-C--cceeccccc-cCC
Confidence 346899999999999999999999999999999999999 753 99999998853221222 2 799998888 899
Q ss_pred HHHHHHH
Q 006897 163 VKETLMF 169 (627)
Q Consensus 163 V~e~l~~ 169 (627)
|.||+.+
T Consensus 91 v~e~l~~ 97 (158)
T 1htw_A 91 DPEELEF 97 (158)
T ss_dssp CTTHHHH
T ss_pred cHHHHHH
Confidence 9999965
|
| >3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B | Back alignment and structure |
|---|
Probab=99.51 E-value=4.3e-16 Score=176.43 Aligned_cols=189 Identities=16% Similarity=0.197 Sum_probs=106.5
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeece----------EEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSV----------SFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQD 125 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~v----------sl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~ 125 (627)
.++++||++.|..+. +++|+.+ +++++. +||+|||||||||||++|+|+..|.
T Consensus 10 ~i~~~~l~~~~~~~~-------------r~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P~- 72 (608)
T 3szr_A 10 SVAENNLCSQYEEKV-------------RPCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVALPR- 72 (608)
T ss_dssp ----------CHHHH-------------HHHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC----
T ss_pred hhhhhhhhHHHHHHH-------------HHHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCCCC-
Confidence 578999999995321 2234333 355554 9999999999999999999998773
Q ss_pred CccceEEECCccCC-----ChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCC---CCCHHHHHHHHHHHHHHcCCc
Q 006897 126 FDPRSITVNCHQIK-----KPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLK---GMSHKEKEDRVESLMDELGLT 197 (627)
Q Consensus 126 ~~~G~i~i~g~~~~-----~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~---~~~~~~~~~~v~~~l~~lgL~ 197 (627)
+.|.|+++|.++. ....+++.+||++|+..+++.+||+||+.++...... +.+.+ .+.+.
T Consensus 73 -~sG~vt~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~~~~~~~~~~~s~~-----------~i~l~ 140 (608)
T 3szr_A 73 -GSGIVTRCPLVLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQNAIAGEGMGISHE-----------LITLE 140 (608)
T ss_dssp -----CCCSCEEEEEEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHHHHHHCSSSCCCSC-----------CEEEE
T ss_pred -CCCeEEEcCEEEEEecCCccccceeEEeeecccccCCCHHHHHHHHHHHHHHhcCCccccchH-----------HHHHH
Confidence 1399999998751 1245778899999999999999999999886432110 00000 00000
Q ss_pred c----ccCCcC---CccccCCCCCCCHHHHHHHHHHHHHHH-HcCCCEEEEEccCccH---HHHHHhhh--------hee
Q 006897 198 H----VAGSFV---GDEENRGISGLDSTSALQVIELLASMA-KAKQRTVVLSIHQPSY---RILQYISK--------FLI 258 (627)
Q Consensus 198 ~----~~~~~~---gGe~qrPtsgLD~~~~~~i~~~L~~l~-~~~g~Tii~~tH~~~~---~i~~~~D~--------i~v 258 (627)
- ..+-.. -|-.+.||+|||+..+.++.++++++. +..+.++++++|+.+. ++.+++++ |+|
T Consensus 141 i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~rtI~V 220 (608)
T 3szr_A 141 ISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTIGI 220 (608)
T ss_dssp EEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCCSEEEE
T ss_pred hcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhcCCceEEE
Confidence 0 000000 123334599999999999999999964 3446788999999762 12333333 467
Q ss_pred ecCCeEEeeCCHHHH
Q 006897 259 LSRGSVVHYGSLELL 273 (627)
Q Consensus 259 L~~G~iv~~G~~~~~ 273 (627)
+.++.++..|+.+++
T Consensus 221 lTK~Dlv~~g~~~~~ 235 (608)
T 3szr_A 221 LTKPDLVDKGTEDKV 235 (608)
T ss_dssp EECGGGSSSSSTTCC
T ss_pred ecchhhcCcccHHHH
Confidence 777777776765443
|
| >1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=6.1e-16 Score=152.95 Aligned_cols=151 Identities=17% Similarity=0.214 Sum_probs=101.8
Q ss_pred eEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCccCCChhhhcccEEEEccCCCCCCCCCH----HH
Q 006897 90 VSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKKPAQLRKICGFVAQEDNLLPLLTV----KE 165 (627)
Q Consensus 90 vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~~~~~~~~r~~ig~v~Q~~~l~~~lTV----~e 165 (627)
-.-..++|++++|+||||||||||+|+|+|+.+|+. ..|.|.+.+++.. ...++.++|+||++..|+.+++ .|
T Consensus 9 ~~~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~-~~g~v~~ttr~~~--~~e~~gi~y~fq~~~~f~~~~~~~~f~E 85 (219)
T 1s96_A 9 HHHHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYD-TQVSVSHTTRQPR--PGEVHGEHYFFVNHDEFKEMISRDAFLE 85 (219)
T ss_dssp ------CCCEEEEECCTTSCHHHHHHHHHHHSCTTT-EEECCCEECSCCC--TTCCBTTTBEECCHHHHHHHHHTTCEEE
T ss_pred ccccCCCCcEEEEECCCCCCHHHHHHHHhccCCCCc-eEEEEEecCCCCC--cccccCceEEECCHHHHHHHHhcCHHHH
Confidence 344679999999999999999999999999988631 3488888887632 2235678999999887877777 56
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccCCcCCccccCCCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCc
Q 006897 166 TLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAGSFVGDEENRGISGLDSTSALQVIELLASMAKAKQRTVVLSIHQP 245 (627)
Q Consensus 166 ~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~gGe~qrPtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~ 245 (627)
++.+.... .+.+ .+.++++++. | +--.--||+.++.++.+.+. .++||++++|++
T Consensus 86 ~~~~~~~~--yg~~----~~~v~~~l~~-G-------------~illLDLD~~~~~~i~~~l~-----~~~tI~i~th~~ 140 (219)
T 1s96_A 86 HAEVFGNY--YGTS----REAIEQVLAT-G-------------VDVFLDIDWQGAQQIRQKMP-----HARSIFILPPSK 140 (219)
T ss_dssp EEEETTEE--EEEE----HHHHHHHHTT-T-------------CEEEEECCHHHHHHHHHHCT-----TCEEEEEECSSH
T ss_pred HHHHHhcc--CCCC----HHHHHHHHhc-C-------------CeEEEEECHHHHHHHHHHcc-----CCEEEEEECCCH
Confidence 65543211 1112 2345555542 1 00111299999999998875 378999999998
Q ss_pred cHHHHHHhhhheeecCCeEEeeCCHHHHHHHHH
Q 006897 246 SYRILQYISKFLILSRGSVVHYGSLELLEETIN 278 (627)
Q Consensus 246 ~~~i~~~~D~i~vL~~G~iv~~G~~~~~~~~~~ 278 (627)
+ ++.+ |+ +++| .++++++...+.
T Consensus 141 ~-~l~~---Rl--~~rG----~~~~e~i~~rl~ 163 (219)
T 1s96_A 141 I-ELDR---RL--RGRG----QDSEEVIAKRMA 163 (219)
T ss_dssp H-HHHH---HH--HTTS----CSCHHHHHHHHH
T ss_pred H-HHHH---HH--HHcC----CCCHHHHHHHHH
Confidence 7 3433 54 7778 678888876654
|
| >2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B* | Back alignment and structure |
|---|
Probab=99.45 E-value=3.1e-14 Score=168.95 Aligned_cols=168 Identities=17% Similarity=0.165 Sum_probs=98.9
Q ss_pred ceEEEEe-----EEEEEccCcccccccccCCccccceeeceEEEEeC-------CeEEEEECCCCCcHHHHHHHHHcCCC
Q 006897 55 CKVTVRN-----LSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARD-------SEILAVVGPSGTGKSSLLRIISGRVR 122 (627)
Q Consensus 55 ~~l~~~n-----ls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~-------Ge~~aIiGpnGsGKSTLl~~L~Gl~~ 122 (627)
.+|+++| |++.|. ++..+++|++|++++ |++++|+||||||||||||+| |++.
T Consensus 749 ~~l~i~~~rHP~l~~~~~--------------~~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~ 813 (1022)
T 2o8b_B 749 PFLELKGSRHPCITKTFF--------------GDDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLA 813 (1022)
T ss_dssp CCEEEEEECCCC--------------------CCCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHH
T ss_pred ceEEEEeccccEEEEEec--------------CCceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHH
Confidence 3699999 998883 124599999999987 999999999999999999999 8875
Q ss_pred CCCCccceEEECCccCCChhhhcccEE-EEccCCCCCCCCCHHHHHHHHHHhcC-----CCCC--HHHHHHHHHHHHHHc
Q 006897 123 DQDFDPRSITVNCHQIKKPAQLRKICG-FVAQEDNLLPLLTVKETLMFSANFRL-----KGMS--HKEKEDRVESLMDEL 194 (627)
Q Consensus 123 ~~~~~~G~i~i~g~~~~~~~~~r~~ig-~v~Q~~~l~~~lTV~e~l~~~~~~~~-----~~~~--~~~~~~~v~~~l~~l 194 (627)
+ ..++| ||||+.. .+||.|++.. ++.. .+.+ ..+.. ++..++...
T Consensus 814 ~---------------------~aqiG~~Vpq~~~---~l~v~d~I~~--rig~~d~~~~~~stf~~em~-~~a~al~la 866 (1022)
T 2o8b_B 814 V---------------------MAQMGCYVPAEVC---RLTPIDRVFT--RLGASDRIMSGESTFFVELS-ETASILMHA 866 (1022)
T ss_dssp H---------------------HHTTTCCEESSEE---EECCCSBEEE--ECC---------CHHHHHHH-HHHHHHHHC
T ss_pred H---------------------HhheeEEeccCcC---CCCHHHHHHH--HcCCHHHHhhchhhhHHHHH-HHHHHHHhC
Confidence 3 11234 7777642 2333333311 0000 0000 00111 122222211
Q ss_pred CCccccCCcCCccccCCCCCCCHHHH-HHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEE--eeCCHH
Q 006897 195 GLTHVAGSFVGDEENRGISGLDSTSA-LQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVV--HYGSLE 271 (627)
Q Consensus 195 gL~~~~~~~~gGe~qrPtsgLD~~~~-~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv--~~G~~~ 271 (627)
. ...-++-.| |++|+|+... ..++++|+.++++.|.++|++||+++. +..++|++.++ +|++. +.|+++
T Consensus 867 ~---~~sLlLLDE---p~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~el-~~~~~d~~~v~-~g~~~~~~~~~~~ 938 (1022)
T 2o8b_B 867 T---AHSLVLVDE---LGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSL-VEDYSQNVAVR-LGHMACMVENECE 938 (1022)
T ss_dssp C---TTCEEEEEC---TTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHHH-HHHTSSCSSEE-EEEEEEC------
T ss_pred C---CCcEEEEEC---CCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHHH-HHHhCCcceee-cCeEEEEEecCcc
Confidence 1 000011222 9999999885 557889999976558999999999984 67789999887 58887 456554
Q ss_pred H
Q 006897 272 L 272 (627)
Q Consensus 272 ~ 272 (627)
+
T Consensus 939 ~ 939 (1022)
T 2o8b_B 939 D 939 (1022)
T ss_dssp -
T ss_pred c
Confidence 3
|
| >2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=8.7e-15 Score=151.69 Aligned_cols=143 Identities=16% Similarity=0.185 Sum_probs=71.8
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcC-CCCCCCccceEEECCccCCChhhhcccEEEEccCCCCCCCC
Q 006897 83 PLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGR-VRDQDFDPRSITVNCHQIKKPAQLRKICGFVAQEDNLLPLL 161 (627)
Q Consensus 83 ~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl-~~~~~~~~G~i~i~g~~~~~~~~~r~~ig~v~Q~~~l~~~l 161 (627)
++.++++++|+| +|+||||||||||++.|+|. +.|.+ | +.++|.++..... .+.+++++|++.+...+
T Consensus 10 ~~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~~---g-i~~~g~~~~~t~~-~~~~~~~~q~~~~~~~l 78 (301)
T 2qnr_A 10 RKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPER---V-ISGAAEKIERTVQ-IEASTVEIEERGVKLRL 78 (301)
T ss_dssp --------CEEE------EEEEETTSSHHHHHHHHHC-----------------------------CEEEEC---CCEEE
T ss_pred CEEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCCC---C-cccCCcccCCcce-EeeEEEEecCCCcccCc
Confidence 456999999998 99999999999999999997 66643 7 8777776432222 35689999998887789
Q ss_pred CHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccCCcCCccccC--------------CCC-CCCHHHHHHHHHH
Q 006897 162 TVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAGSFVGDEENR--------------GIS-GLDSTSALQVIEL 226 (627)
Q Consensus 162 TV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~gGe~qr--------------Pts-gLD~~~~~~i~~~ 226 (627)
|+.|+..++.... ..+..+..++.+.+.. +......+||++|| |++ |||+... +.
T Consensus 79 tv~Dt~g~~~~~~----~~e~~~~l~~~l~~~~--~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~~Ld~~~~----~~ 148 (301)
T 2qnr_A 79 TVVDTPGYGDAIN----CRDCFKTIISYIDEQF--ERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDV----AF 148 (301)
T ss_dssp EEEEEC---------------CTTHHHHHHHHH--HHHHHHHTSSCCTTCCCCCCCEEEEEECSSSSSCCHHHH----HH
T ss_pred chhhhhhhhhhcC----cHHHHHHHHHHHHHHH--HHHHHHhCHHhhhhhhhhhhhheeeeecCcccCCCHHHH----HH
Confidence 9999988754221 0011011112111111 12233455888877 787 5999863 56
Q ss_pred HHHHHHcCCCEEEEEccCcc
Q 006897 227 LASMAKAKQRTVVLSIHQPS 246 (627)
Q Consensus 227 L~~l~~~~g~Tii~~tH~~~ 246 (627)
++++.++.+.++|++.||+.
T Consensus 149 l~~l~~~~~iilV~~K~Dl~ 168 (301)
T 2qnr_A 149 MKAIHNKVNIVPVIAKADTL 168 (301)
T ss_dssp HHHHTTTSCEEEEECCGGGS
T ss_pred HHHHHhcCCEEEEEEeCCCC
Confidence 66665545789999999975
|
| >1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.42 E-value=9.9e-15 Score=139.55 Aligned_cols=138 Identities=16% Similarity=0.179 Sum_probs=75.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCccCCCh--hhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKKP--AQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLK 176 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~~~~~--~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~ 176 (627)
.++|+||||||||||+|+|+|++. +.++|.+..+. ...++.+||++|+.. +.+++ ++ .....
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~--------i~~~g~~~~~~~~~~~~~~ig~~~~~~~------~~~~~-~~-~~~~~ 65 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG--------KRAIGFWTEEVRDPETKKRTGFRIITTE------GKKKI-FS-SKFFT 65 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG--------GGEEEEEEEEEC------CCEEEEEETT------CCEEE-EE-ETTCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC--------CcCCCEEhhhhccccccceeEEEeecCc------HHHHH-HH-hhcCC
Confidence 589999999999999999999974 22333321111 134678999999752 22222 10 00000
Q ss_pred -----C-----CCHHHHHHHHHHHHHH-----cCCccccCCcCCccccCCCCCCCHHHHHHHHHHHHHHHHcCCCEEEEE
Q 006897 177 -----G-----MSHKEKEDRVESLMDE-----LGLTHVAGSFVGDEENRGISGLDSTSALQVIELLASMAKAKQRTVVLS 241 (627)
Q Consensus 177 -----~-----~~~~~~~~~v~~~l~~-----lgL~~~~~~~~gGe~qrPtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~ 241 (627)
+ .+.-+ ++++. ++.. +-.+ .+-++-.|-- ||++||+..+..+.+.+++ .+.|+|++
T Consensus 66 ~~~~~~~~~~~lSgG~-~qr~~-la~aa~~~~l~~~--p~llilDEig-p~~~ld~~~~~~l~~~l~~----~~~~~i~~ 136 (178)
T 1ye8_A 66 SKKLVGSYGVNVQYFE-ELAIP-ILERAYREAKKDR--RKVIIIDEIG-KMELFSKKFRDLVRQIMHD----PNVNVVAT 136 (178)
T ss_dssp CSSEETTEEECHHHHH-HHHHH-HHHHHHHHHHHCT--TCEEEECCCS-TTGGGCHHHHHHHHHHHTC----TTSEEEEE
T ss_pred ccccccccccCcCHHH-HHHHH-HHhhccccccccC--CCEEEEeCCC-CcccCCHHHHHHHHHHHhc----CCCeEEEE
Confidence 0 00111 11211 1111 1111 0111111111 8999999999999888865 46778888
Q ss_pred cc---CccHHHHHHhhhheeecCCeEEe
Q 006897 242 IH---QPSYRILQYISKFLILSRGSVVH 266 (627)
Q Consensus 242 tH---~~~~~i~~~~D~i~vL~~G~iv~ 266 (627)
+| +.+ .+.++||| .+|++++
T Consensus 137 ~H~~h~~~-~~~~i~~r----~~~~i~~ 159 (178)
T 1ye8_A 137 IPIRDVHP-LVKEIRRL----PGAVLIE 159 (178)
T ss_dssp CCSSCCSH-HHHHHHTC----TTCEEEE
T ss_pred EccCCCch-HHHHHHhc----CCcEEEE
Confidence 85 666 47778887 5677765
|
| >1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D* | Back alignment and structure |
|---|
Probab=99.41 E-value=2.3e-15 Score=156.05 Aligned_cols=144 Identities=13% Similarity=0.135 Sum_probs=94.8
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCccCCCh---h---hh--cccEEEEccCCCCCCCCCHHHHH
Q 006897 96 DSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKKP---A---QL--RKICGFVAQEDNLLPLLTVKETL 167 (627)
Q Consensus 96 ~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~~~~~---~---~~--r~~ig~v~Q~~~l~~~lTV~e~l 167 (627)
+|++++|+||||||||||+++|+|+++|++ |+|.++|.++... . .+ ++.++|++|+..++|.++++||+
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~---g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v 177 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLG---KKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAV 177 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTT---CCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcC---CEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHH
Confidence 799999999999999999999999999864 9999999886321 1 12 35699999999888989999999
Q ss_pred HHHHHhcC-------CCCCHHHHHHHHHHHHHHcCCccccCCcCCccccCCCCCCCHHHHHHHHHHHHHHHHcCCCEEEE
Q 006897 168 MFSANFRL-------KGMSHKEKEDRVESLMDELGLTHVAGSFVGDEENRGISGLDSTSALQVIELLASMAKAKQRTVVL 240 (627)
Q Consensus 168 ~~~~~~~~-------~~~~~~~~~~~v~~~l~~lgL~~~~~~~~gGe~qrPtsgLD~~~~~~i~~~L~~l~~~~g~Tii~ 240 (627)
.++..... .+.... ......+ ++.... ..+..+ -.+.+...-.||+.+..++++.++++.++.|.|+|+
T Consensus 178 ~~~~~~~~d~~llDt~G~~~~-~~~~~~e-Ls~~r~-~iaRal-~~~P~~~lLvLDa~t~~~~~~~~~~~~~~~~~t~ii 253 (304)
T 1rj9_A 178 QAMKARGYDLLFVDTAGRLHT-KHNLMEE-LKKVKR-AIAKAD-PEEPKEVWLVLDAVTGQNGLEQAKKFHEAVGLTGVI 253 (304)
T ss_dssp HHHHHHTCSEEEECCCCCCTT-CHHHHHH-HHHHHH-HHHHHC-TTCCSEEEEEEETTBCTHHHHHHHHHHHHHCCSEEE
T ss_pred HHHHhCCCCEEEecCCCCCCc-hHHHHHH-HHHHHH-HHHHhh-cCCCCeEEEEEcHHHHHHHHHHHHHHHHHcCCcEEE
Confidence 87642110 011000 0000110 000000 000000 001111234799998899999999987766899999
Q ss_pred EccCcc
Q 006897 241 SIHQPS 246 (627)
Q Consensus 241 ~tH~~~ 246 (627)
+||+..
T Consensus 254 vTh~d~ 259 (304)
T 1rj9_A 254 VTKLDG 259 (304)
T ss_dssp EECTTS
T ss_pred EECCcc
Confidence 999853
|
| >2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis} | Back alignment and structure |
|---|
Probab=99.40 E-value=9.8e-14 Score=147.41 Aligned_cols=136 Identities=13% Similarity=0.120 Sum_probs=95.0
Q ss_pred eeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCccCCChhhhcccEEEEc-cCCCC--CCCCCH
Q 006897 87 LKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKKPAQLRKICGFVA-QEDNL--LPLLTV 163 (627)
Q Consensus 87 L~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~~~~~~~~r~~ig~v~-Q~~~l--~~~lTV 163 (627)
++++|+.+++|++++|+||||||||||+++|+|+++|+. |.|.++|..-......++.+++++ |++.+ ++..|+
T Consensus 165 ~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~---g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~~~~~~~t~ 241 (361)
T 2gza_A 165 MSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQ---RLITIEDVPELFLPDHPNHVHLFYPSEAKEEENAPVTA 241 (361)
T ss_dssp HHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTS---CEEEEESSSCCCCTTCSSEEEEECC----------CCH
T ss_pred HHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCc---eEEEECCccccCccccCCEEEEeecCccccccccccCH
Confidence 499999999999999999999999999999999999864 999999854222233567899999 87654 467899
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccCCcCCccccCCCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEcc
Q 006897 164 KETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAGSFVGDEENRGISGLDSTSALQVIELLASMAKAKQRTVVLSIH 243 (627)
Q Consensus 164 ~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~gGe~qrPtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH 243 (627)
++||..+.+.+ + +..+-||.+ . .+..+.|+.+.. ...|++.++|
T Consensus 242 ~~~i~~~l~~~----p---------------------d~~l~~e~r---~-------~~~~~~l~~l~~-g~~~~l~t~H 285 (361)
T 2gza_A 242 ATLLRSCLRMK----P---------------------TRILLAELR---G-------GEAYDFINVAAS-GHGGSITSCH 285 (361)
T ss_dssp HHHHHHHTTSC----C---------------------SEEEESCCC---S-------THHHHHHHHHHT-TCCSCEEEEE
T ss_pred HHHHHHHHhcC----C---------------------CEEEEcCch---H-------HHHHHHHHHHhc-CCCeEEEEEC
Confidence 99998764211 1 011112211 1 245566666643 3457899999
Q ss_pred CccHHHHHHhhhheeecCCe
Q 006897 244 QPSYRILQYISKFLILSRGS 263 (627)
Q Consensus 244 ~~~~~i~~~~D~i~vL~~G~ 263 (627)
..+ ....+||+..+..|.
T Consensus 286 ~~~--~~~~~~Rl~~l~~~~ 303 (361)
T 2gza_A 286 AGS--CELTFERLALMVLQN 303 (361)
T ss_dssp CSS--HHHHHHHHHHHHTTS
T ss_pred CCC--HHHHHHHHHHHHhcc
Confidence 976 578999999998874
|
| >3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=1.6e-13 Score=161.06 Aligned_cols=155 Identities=15% Similarity=0.151 Sum_probs=97.2
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHH--------HcCCCCCCCccceEEECCccCCChhhhcccEEEEccC
Q 006897 83 PLHILKSVSFEARDSEILAVVGPSGTGKSSLLRII--------SGRVRDQDFDPRSITVNCHQIKKPAQLRKICGFVAQE 154 (627)
Q Consensus 83 ~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L--------~Gl~~~~~~~~G~i~i~g~~~~~~~~~r~~ig~v~Q~ 154 (627)
.+.+++|++|++++|++++|+||||||||||||++ .|...|.. +. . ++.+
T Consensus 648 ~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~---~~-~---------------~~~~--- 705 (934)
T 3thx_A 648 IAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCE---SA-E---------------VSIV--- 705 (934)
T ss_dssp CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEE---EE-E---------------EECC---
T ss_pred ceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCccccc---cc-c---------------chHH---
Confidence 45689999999999999999999999999999999 55544421 11 0 1110
Q ss_pred CCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccCCcCCccccCCCCCCCHHHHHHH-HHHHHHHHHc
Q 006897 155 DNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAGSFVGDEENRGISGLDSTSALQV-IELLASMAKA 233 (627)
Q Consensus 155 ~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~gGe~qrPtsgLD~~~~~~i-~~~L~~l~~~ 233 (627)
+.++..+...+++.-+.. . -..+ ..++..++..+. + ..-++-.| |++|||+.....+ ..+++.++++
T Consensus 706 d~i~~~ig~~d~l~~~lS----t-f~~e-~~~~a~il~~a~--~-~sLlLLDE---p~~GlD~~~~~~i~~~il~~l~~~ 773 (934)
T 3thx_A 706 DCILARVGAGDSQLKGVS----T-FMAE-MLETASILRSAT--K-DSLIIIDE---LGRGTSTYDGFGLAWAISEYIATK 773 (934)
T ss_dssp SEEEEECC---------C----H-HHHH-HHHHHHHHHHCC--T-TCEEEEES---CSCSSCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhcCchhhHHHhHh----h-hHHH-HHHHHHHHHhcc--C-CcEEEEeC---CCCCCCHHHHHHHHHHHHHHHHhc
Confidence 111222233344332210 0 0111 222334444321 0 00111222 9999999999888 6777888765
Q ss_pred CCCEEEEEccCccHHHHHHhhhheeecCCeEEeeCCHHHH
Q 006897 234 KQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGSLELL 273 (627)
Q Consensus 234 ~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~ 273 (627)
.|.|+|++||+.+ +.++||++..+++|++...++.+++
T Consensus 774 ~g~~vl~aTH~~e--l~~lad~~~~v~ng~v~~~~~~~~l 811 (934)
T 3thx_A 774 IGAFCMFATHFHE--LTALANQIPTVNNLHVTALTTEETL 811 (934)
T ss_dssp TCCEEEEEESCGG--GGGGGGTCTTEEEEEEEEEEETTEE
T ss_pred CCCEEEEEcCcHH--HHHHhcccceeEeeEEEEEecCCcE
Confidence 6899999999975 5789999999999999887766543
|
| >3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=3.2e-14 Score=139.09 Aligned_cols=125 Identities=11% Similarity=0.075 Sum_probs=90.5
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCccCCChhhhcccEEEEccCCCCC--CCCCHHHHHHHHH
Q 006897 94 ARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKKPAQLRKICGFVAQEDNLL--PLLTVKETLMFSA 171 (627)
Q Consensus 94 i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~~~~~~~~r~~ig~v~Q~~~l~--~~lTV~e~l~~~~ 171 (627)
.++|+++||+||||||||||+++|+|++.| .++|++|++.++ ..+|+.+++.+..
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~-----------------------~i~~v~~d~~~~~~~~~~~~~~~~~~~ 59 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE-----------------------RVALLPMDHYYKDLGHLPLEERLRVNY 59 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG-----------------------GEEEEEGGGCBCCCTTSCHHHHHHSCT
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC-----------------------CeEEEecCccccCcccccHHHhcCCCC
Confidence 578999999999999999999999998642 478999998776 5679998875531
Q ss_pred HhcCCCCCHHHHHHHHHHHHHHcCCccccCCc----CCccc----cC------------------CCCC-------CCHH
Q 006897 172 NFRLKGMSHKEKEDRVESLMDELGLTHVAGSF----VGDEE----NR------------------GISG-------LDST 218 (627)
Q Consensus 172 ~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~----~gGe~----qr------------------Ptsg-------LD~~ 218 (627)
+.+.....+++.++++.+++.+..+.. .+|++ || |+++ ||+.
T Consensus 60 -----~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld~~ 134 (211)
T 3asz_A 60 -----DHPDAFDLALYLEHAQALLRGLPVEMPVYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVFVDAD 134 (211)
T ss_dssp -----TSGGGBCHHHHHHHHHHHHTTCCEEECCEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEECC
T ss_pred -----CChhhhhHHHHHHHHHHHHcCCCcCCCcccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEeCC
Confidence 111222345677788888776544332 25543 32 5667 8988
Q ss_pred HHHHHHHHHHHHHHcCCCEEEEEccCcc
Q 006897 219 SALQVIELLASMAKAKQRTVVLSIHQPS 246 (627)
Q Consensus 219 ~~~~i~~~L~~l~~~~g~Tii~~tH~~~ 246 (627)
....+.+.+++..++.|+|++.++|+..
T Consensus 135 ~~~~~~r~l~r~~~~~g~t~~~~~~~~~ 162 (211)
T 3asz_A 135 ADERFIRRLKRDVLERGRSLEGVVAQYL 162 (211)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 8999999998865556899999999753
|
| >2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=99.36 E-value=1.9e-14 Score=138.21 Aligned_cols=162 Identities=11% Similarity=0.112 Sum_probs=97.9
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCccCCChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcC-
Q 006897 97 SEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRL- 175 (627)
Q Consensus 97 Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~~~~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~- 175 (627)
|++++|+||||||||||+++|++ +. .|.+.++|.++.. ....++++|.....+.+++++++.+.+....
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~---~~---~g~~~i~~d~~~~----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 71 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA---QL---DNSAYIEGDIINH----MVVGGYRPPWESDELLALTWKNITDLTVNFLL 71 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH---HS---SSEEEEEHHHHHT----TCCTTCCCGGGCHHHHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHhc---cc---CCeEEEcccchhh----hhccccccCccchhHHHHHHHHHHHHHHHHHh
Confidence 78999999999999999999997 22 2889998866321 1235677776655556689999887543211
Q ss_pred CC-------CCHHHHHHHHHHHHHHcCCccc---cC------CcCCccccCCC-CCCCHHHHHHHHHHHHHHHHcCCCEE
Q 006897 176 KG-------MSHKEKEDRVESLMDELGLTHV---AG------SFVGDEENRGI-SGLDSTSALQVIELLASMAKAKQRTV 238 (627)
Q Consensus 176 ~~-------~~~~~~~~~v~~~l~~lgL~~~---~~------~~~gGe~qrPt-sgLD~~~~~~i~~~L~~l~~~~g~Ti 238 (627)
.+ .......+.+.+.++.-|.... .- .+..-.+.|+. .+||+..... .+.++.+.+ .+.++
T Consensus 72 ~~~~~ild~~~~~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~~ld~~~~~~-~~~~~~~~~-~~~~i 149 (189)
T 2bdt_A 72 AQNDVVLDYIAFPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDEQMGERCLEL-VEEFESKGI-DERYF 149 (189)
T ss_dssp TTCEEEEESCCCHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC----CGGGGHH-HHHHHHTTC-CTTSE
T ss_pred cCCcEEEeeccCHHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccccCCHHHHHH-HHHHhhcCC-CccEE
Confidence 11 1011222333333321122100 00 00011112222 5899988888 888888753 57899
Q ss_pred EEEccC-ccHHHHHHhhhheeecCCeEEeeCCHHHH
Q 006897 239 VLSIHQ-PSYRILQYISKFLILSRGSVVHYGSLELL 273 (627)
Q Consensus 239 i~~tH~-~~~~i~~~~D~i~vL~~G~iv~~G~~~~~ 273 (627)
|.++|+ ++ ++.+.||+|+ ++|+++..|+++-+
T Consensus 150 i~tsh~~~~-~~e~~~~~i~--~~g~~~~~~~~~~~ 182 (189)
T 2bdt_A 150 YNTSHLQPT-NLNDIVKNLK--TNPRFIFCMAGDPL 182 (189)
T ss_dssp EECSSSCGG-GHHHHHHHHH--HCGGGSCC------
T ss_pred EeCCCCChh-hHHHHHHHHh--hCCcEEEeecCCch
Confidence 999998 87 4899999999 99999999987654
|
| >1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=1.1e-13 Score=160.44 Aligned_cols=157 Identities=13% Similarity=0.107 Sum_probs=99.2
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCccCCChhhhcccEEEEccCCCCCCCCC
Q 006897 83 PLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKKPAQLRKICGFVAQEDNLLPLLT 162 (627)
Q Consensus 83 ~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~~~~~~~~r~~ig~v~Q~~~l~~~lT 162 (627)
++.+++|+|++ ++|++++|+||||||||||||+|+|+..... .|. .+.. -+..+++++| +++.++
T Consensus 594 ~~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q--~G~------~vpa---~~~~i~~~~~---i~~~~~ 658 (800)
T 1wb9_A 594 EPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAY--IGS------YVPA---QKVEIGPIDR---IFTRVG 658 (800)
T ss_dssp SCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHT--TTC------CBSS---SEEEECCCCE---EEEEEC
T ss_pred Cceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHHh--cCc------ccch---hcccceeHHH---HHhhCC
Confidence 35689999999 9999999999999999999999999753211 121 1111 1234677665 667789
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccCCcCCccccCCCCCCCHHHHHHH-HHHHHHHHHcCCCEEEEE
Q 006897 163 VKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAGSFVGDEENRGISGLDSTSALQV-IELLASMAKAKQRTVVLS 241 (627)
Q Consensus 163 V~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~gGe~qrPtsgLD~~~~~~i-~~~L~~l~~~~g~Tii~~ 241 (627)
+.|++..+.. .. ..+. .++..+++.+. ...-++-.| |++|+|+.....+ .++++.++++.|.|+|++
T Consensus 659 ~~d~l~~~~s----tf-~~e~-~~~~~il~~a~---~psLlLLDE---p~~Gtd~~d~~~i~~~ll~~l~~~~g~~vl~~ 726 (800)
T 1wb9_A 659 AADDLASGRS----TF-MVEM-TETANILHNAT---EYSLVLMDE---IGRGTSTYDGLSLAWACAENLANKIKALTLFA 726 (800)
T ss_dssp ---------------C-HHHH-HHHHHHHHHCC---TTEEEEEES---CCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHHhhhh----hh-hHHH-HHHHHHHHhcc---CCCEEEEEC---CCCCCChhHHHHHHHHHHHHHHhccCCeEEEE
Confidence 9999876532 11 1222 23444444321 000011222 8888888777665 778888876458999999
Q ss_pred ccCccHHHHHHhhhheeecCCeEEeeC
Q 006897 242 IHQPSYRILQYISKFLILSRGSVVHYG 268 (627)
Q Consensus 242 tH~~~~~i~~~~D~i~vL~~G~iv~~G 268 (627)
||+++ +.++||++..+.+|++....
T Consensus 727 TH~~e--l~~l~d~~~~v~n~~~~~~~ 751 (800)
T 1wb9_A 727 THYFE--LTQLPEKMEGVANVHLDALE 751 (800)
T ss_dssp CSCGG--GGGHHHHSTTEEEEEEEEEE
T ss_pred eCCHH--HHHHhhhhhceEEEEEEEEE
Confidence 99986 45799999888888886643
|
| >1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=99.34 E-value=2.4e-14 Score=151.39 Aligned_cols=168 Identities=14% Similarity=0.093 Sum_probs=104.3
Q ss_pred ceeece-EEEEeCCeEEEEECCCCCcHHHHHHHHHcCC--CCCC-Cccce-EEECCccCCChhhhcccEEEEccCCCCCC
Q 006897 85 HILKSV-SFEARDSEILAVVGPSGTGKSSLLRIISGRV--RDQD-FDPRS-ITVNCHQIKKPAQLRKICGFVAQEDNLLP 159 (627)
Q Consensus 85 ~iL~~v-sl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~--~~~~-~~~G~-i~i~g~~~~~~~~~r~~ig~v~Q~~~l~~ 159 (627)
..||++ ++.+++|++++|+||||||||||++.|++.. +|+. ...|. +++++++.. .++++++++|+..+++
T Consensus 118 ~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~----~~~~i~~i~q~~~~~~ 193 (349)
T 1pzn_A 118 KSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF----RPERIREIAQNRGLDP 193 (349)
T ss_dssp HHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC----CHHHHHHHHHTTTCCH
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCC----CHHHHHHHHHHcCCCH
Confidence 357776 6899999999999999999999999999987 4432 01267 889887631 2356788899887766
Q ss_pred CCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccCCcCCccccC-------CCCCCCHHH------------H
Q 006897 160 LLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAGSFVGDEENR-------GISGLDSTS------------A 220 (627)
Q Consensus 160 ~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~gGe~qr-------PtsgLD~~~------------~ 220 (627)
. ++.||+.+.. ........+.++.+ ......++||+.+- |++++|+.. .
T Consensus 194 ~-~v~~ni~~~~-----~~~~~~~~~~l~~~------~~~~~~lS~G~~~~~llIlDs~ta~ld~~~~~~~~~~~r~~~~ 261 (349)
T 1pzn_A 194 D-EVLKHIYVAR-----AFNSNHQMLLVQQA------EDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKL 261 (349)
T ss_dssp H-HHGGGEEEEE-----CCSHHHHHHHHHHH------HHHHHHSSSSSSCEEEEEEETSSTTHHHHCCSTTTHHHHHHHH
T ss_pred H-HHhhCEEEEe-----cCChHHHHHHHHHH------HHHHHHhccccCCCCEEEEeCchHhhhhhhcccccHHHHHHHH
Confidence 5 8888876531 11222222222211 12223345665322 899999852 4
Q ss_pred HHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeCC
Q 006897 221 LQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGS 269 (627)
Q Consensus 221 ~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~ 269 (627)
.++++.|++++++.|+|||+++|... +....++.......|++++++.
T Consensus 262 ~~~l~~L~~la~~~~~tvii~~h~~~-~~~~~~~~~~~~~~G~~l~~~~ 309 (349)
T 1pzn_A 262 AKHLADLHRLANLYDIAVFVTNQVQA-RPDAFFGDPTRPIGGHILAHSA 309 (349)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEECC----------------CCCCCTTC
T ss_pred HHHHHHHHHHHHHcCcEEEEEccccc-ccccccCCccccCCcceEeecC
Confidence 67778888888878999999999876 3444455566666777665554
|
| >2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.33 E-value=5.9e-13 Score=134.99 Aligned_cols=133 Identities=15% Similarity=0.193 Sum_probs=87.1
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCccCCChhhhcccEEEEccCCCCCCCCCHH
Q 006897 85 HILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKKPAQLRKICGFVAQEDNLLPLLTVK 164 (627)
Q Consensus 85 ~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~~~~~~~~r~~ig~v~Q~~~l~~~lTV~ 164 (627)
.+|+|+| +++|++++|+||||||||||+++|+|+++|.. .|+|.++|.++.. ..+..+++++|...-....+.+
T Consensus 15 ~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~--~G~I~~~g~~i~~--~~~~~~~~v~q~~~gl~~~~l~ 88 (261)
T 2eyu_A 15 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTK--SYHIITIEDPIEY--VFKHKKSIVNQREVGEDTKSFA 88 (261)
T ss_dssp THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHC--CCEEEEEESSCCS--CCCCSSSEEEEEEBTTTBSCHH
T ss_pred HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCCC--CCEEEEcCCccee--ecCCcceeeeHHHhCCCHHHHH
Confidence 3899999 99999999999999999999999999998741 3999999877421 1223345666631100101111
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccCCcCCccccCCCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccC
Q 006897 165 ETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAGSFVGDEENRGISGLDSTSALQVIELLASMAKAKQRTVVLSIHQ 244 (627)
Q Consensus 165 e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~gGe~qrPtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~ 244 (627)
..+..+|.. + .+-++-|| |+ |+.+...++ +. +. .|.+|++++|+
T Consensus 89 --------------------~~la~aL~~-~----p~illlDE---p~---D~~~~~~~l---~~-~~-~g~~vl~t~H~ 132 (261)
T 2eyu_A 89 --------------------DALRAALRE-D----PDVIFVGE---MR---DLETVETAL---RA-AE-TGHLVFGTLHT 132 (261)
T ss_dssp --------------------HHHHHHHHH-C----CSEEEESC---CC---SHHHHHHHH---HH-HH-TTCEEEEEECC
T ss_pred --------------------HHHHHHHhh-C----CCEEEeCC---CC---CHHHHHHHH---HH-Hc-cCCEEEEEeCc
Confidence 112222221 1 12222344 55 888765443 33 33 58999999999
Q ss_pred ccHHHHHHhhhheeecC
Q 006897 245 PSYRILQYISKFLILSR 261 (627)
Q Consensus 245 ~~~~i~~~~D~i~vL~~ 261 (627)
.+ +.+.+||++.|..
T Consensus 133 ~~--~~~~~dri~~l~~ 147 (261)
T 2eyu_A 133 NT--AIDTIHRIVDIFP 147 (261)
T ss_dssp SS--HHHHHHHHHHTSC
T ss_pred ch--HHHHHHHHhhhcC
Confidence 87 5789999999865
|
| >2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2} | Back alignment and structure |
|---|
Probab=99.33 E-value=6.8e-14 Score=138.03 Aligned_cols=169 Identities=13% Similarity=0.097 Sum_probs=100.0
Q ss_pred cceeeceEE-EEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCccCCChhhhc---ccEEEEccCCCCCC
Q 006897 84 LHILKSVSF-EARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKKPAQLR---KICGFVAQEDNLLP 159 (627)
Q Consensus 84 ~~iL~~vsl-~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~~~~~~~~r---~~ig~v~Q~~~l~~ 159 (627)
.+.|+++.. .+++|++++|+||||||||||++.|++...+.+ |.+.+.+.+. ...+++ ..+++.+|+....
T Consensus 9 ~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~---~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~- 83 (235)
T 2w0m_A 9 ILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDG---DPCIYVTTEE-SRDSIIRQAKQFNWDFEEYIEK- 83 (235)
T ss_dssp CHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHT---CCEEEEESSS-CHHHHHHHHHHTTCCCGGGBTT-
T ss_pred chHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCC---CeEEEEEccc-CHHHHHHHHHHhcchHHHHhhC-
Confidence 457899986 899999999999999999999999998876532 6777665442 222211 1344444432100
Q ss_pred CCCHHHHHH--HHHHhcCCCCCHHHHHHHHHHHHHHcCCccccCCcCCccccCCCCCC--CHHHHHHHHHHHHHHHHcCC
Q 006897 160 LLTVKETLM--FSANFRLKGMSHKEKEDRVESLMDELGLTHVAGSFVGDEENRGISGL--DSTSALQVIELLASMAKAKQ 235 (627)
Q Consensus 160 ~lTV~e~l~--~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~gGe~qrPtsgL--D~~~~~~i~~~L~~l~~~~g 235 (627)
.+.+.+... +.........+..+..+.+.+.+...+.+.. -++-.| |++++ |+....++++.|++++++.|
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--llilDe---~~~~~~~d~~~~~~~~~~l~~~~~~~~ 158 (235)
T 2w0m_A 84 KLIIIDALMKEKEDQWSLVNLTPEELVNKVIEAKQKLGYGKA--RLVIDS---VSALFLDKPAMARKISYYLKRVLNKWN 158 (235)
T ss_dssp TEEEEECCC----CTTBCSSCCHHHHHHHHHHHHHHHCSSCE--EEEEET---GGGGSSSCGGGHHHHHHHHHHHHHHTT
T ss_pred CEEEEeccccccCceeeecCCCHHHHHHHHHHHHHhhCCCce--EEEEEC---chHhhcCCHHHHHHHHHHHHHHHHhCC
Confidence 011100000 0000000111233334444555444332200 111112 66555 99889999999999988789
Q ss_pred CEEEEEccCcc-------HHHHHHhhhheeecCC
Q 006897 236 RTVVLSIHQPS-------YRILQYISKFLILSRG 262 (627)
Q Consensus 236 ~Tii~~tH~~~-------~~i~~~~D~i~vL~~G 262 (627)
.|||+++|+.. ..+.++||++++|++.
T Consensus 159 ~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~~ 192 (235)
T 2w0m_A 159 FTIYATSQYAITTSQAFGFGVEHVADGIIRFRRM 192 (235)
T ss_dssp EEEEEEEC-----------CHHHHCSEEEEEEEE
T ss_pred CeEEEEeccCcccccccccchheeeeEEEEEEEE
Confidence 99999999982 1378899999999864
|
| >2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A | Back alignment and structure |
|---|
Probab=99.32 E-value=4.5e-13 Score=145.81 Aligned_cols=174 Identities=10% Similarity=0.104 Sum_probs=107.2
Q ss_pred eeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCccCCCh------hh--hcccEEEEccCCCCC
Q 006897 87 LKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKKP------AQ--LRKICGFVAQEDNLL 158 (627)
Q Consensus 87 L~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~~~~~------~~--~r~~ig~v~Q~~~l~ 158 (627)
-+++||++++|++++|+||||||||||+++|+|++++.+ |+|.++|.+.... .. .|+.++|++|+..++
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~---G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~ 359 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQG---KSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGAD 359 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTT---CCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCC
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcC---CeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcC
Confidence 368999999999999999999999999999999998754 9999987764331 11 356799999998888
Q ss_pred CCCCHHHHHHHHHHhc-------CCCC--CHHHHHHHHHHHHHHcCCccccCCcCCccccCCCCCCCHHHHHHHHHHHHH
Q 006897 159 PLLTVKETLMFSANFR-------LKGM--SHKEKEDRVESLMDELGLTHVAGSFVGDEENRGISGLDSTSALQVIELLAS 229 (627)
Q Consensus 159 ~~lTV~e~l~~~~~~~-------~~~~--~~~~~~~~v~~~l~~lgL~~~~~~~~gGe~qrPtsgLD~~~~~~i~~~L~~ 229 (627)
+.+++++|+.++..-. ..+. .+......+.++..... ...-+......--||+.+....++.++.
T Consensus 360 p~~tV~e~l~~a~~~~~DvVLIDTaGrl~~~~~lm~EL~kiv~iar------~l~~~~P~evLLvLDattGq~al~~ak~ 433 (503)
T 2yhs_A 360 SASVIFDAIQAAKARNIDVLIADTAGRLQNKSHLMEELKKIVRVMK------KLDVEAPHEVMLTIDASTGQNAVSQAKL 433 (503)
T ss_dssp HHHHHHHHHHHHHHTTCSEEEECCCCSCCCHHHHHHHHHHHHHHHH------TTCTTCSSEEEEEEEGGGTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCccchhhhHHHHHHHHHHHHH------HhccCCCCeeEEEecCcccHHHHHHHHH
Confidence 8889999999875321 1111 11111111222211111 0000000011113455555555666777
Q ss_pred HHHcCCCEEEEEccCccHHHHHHhhhheeec--CCeEEeeCCHH
Q 006897 230 MAKAKQRTVVLSIHQPSYRILQYISKFLILS--RGSVVHYGSLE 271 (627)
Q Consensus 230 l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~--~G~iv~~G~~~ 271 (627)
+.+..|.|.+++|| ++. ..+..+.+-++. +..|.+.|.-+
T Consensus 434 f~~~~~itgvIlTK-LD~-takgG~~lsi~~~~~~PI~fig~Ge 475 (503)
T 2yhs_A 434 FHEAVGLTGITLTK-LDG-TAKGGVIFSVADQFGIPIRYIGVGE 475 (503)
T ss_dssp HHHHTCCSEEEEEC-GGG-CSCCTHHHHHHHHHCCCEEEEECSS
T ss_pred HHhhcCCCEEEEEc-CCC-cccccHHHHHHHHHCCCEEEEecCC
Confidence 77667899999999 332 233333333333 23555555443
|
| >1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=5.2e-13 Score=148.94 Aligned_cols=134 Identities=17% Similarity=0.172 Sum_probs=95.3
Q ss_pred EEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCccCCChhhhcccEEEEccCCCCCCCCCHHHHHHHH
Q 006897 91 SFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFS 170 (627)
Q Consensus 91 sl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~~~~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~ 170 (627)
++.+++|++++|+||||||||||++.++|..++. |+ +.+.+++|++. .++.++..
T Consensus 275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~----G~---------------~vi~~~~ee~~----~~l~~~~~-- 329 (525)
T 1tf7_A 275 GGGFFKDSIILATGATGTGKTLLVSRFVENACAN----KE---------------RAILFAYEESR----AQLLRNAY-- 329 (525)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTT----TC---------------CEEEEESSSCH----HHHHHHHH--
T ss_pred CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC----CC---------------CEEEEEEeCCH----HHHHHHHH--
Confidence 4599999999999999999999999999987763 32 11345555531 02222211
Q ss_pred HHhcCCCCCHHHHHHHHHHHHHHcCCccccC----CcCCccccC-----------------CCCCCCHH-----HHHHHH
Q 006897 171 ANFRLKGMSHKEKEDRVESLMDELGLTHVAG----SFVGDEENR-----------------GISGLDST-----SALQVI 224 (627)
Q Consensus 171 ~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~----~~~gGe~qr-----------------PtsgLD~~-----~~~~i~ 224 (627)
+ .+.+. ++ +...|+....+ .++|||+|| ||++||.. .+..+.
T Consensus 330 ---~-~g~~~-------~~-~~~~g~~~~~~~~p~~LS~g~~q~~~~a~~l~~~p~llilDp~~~Ld~~~~~~~~~~~i~ 397 (525)
T 1tf7_A 330 ---S-WGMDF-------EE-MERQNLLKIVCAYPESAGLEDHLQIIKSEINDFKPARIAIDSLSALARGVSNNAFRQFVI 397 (525)
T ss_dssp ---T-TSCCH-------HH-HHHTTSEEECCCCGGGSCHHHHHHHHHHHHHTTCCSEEEEECHHHHTSSSCHHHHHHHHH
T ss_pred ---H-cCCCH-------HH-HHhCCCEEEEEeccccCCHHHHHHHHHHHHHhhCCCEEEEcChHHHHhhCChHHHHHHHH
Confidence 1 11221 11 22345544433 345788776 99999999 999999
Q ss_pred HHHHHHHHcCCCEEEEEccCc----------cHHHHHHhhhheeecCCe
Q 006897 225 ELLASMAKAKQRTVVLSIHQP----------SYRILQYISKFLILSRGS 263 (627)
Q Consensus 225 ~~L~~l~~~~g~Tii~~tH~~----------~~~i~~~~D~i~vL~~G~ 263 (627)
++++.+++ .|.|+|+++|+. . .+..+||++++|++|+
T Consensus 398 ~ll~~l~~-~g~tvilvsh~~~~~~~~~~~~~-~l~~~~D~vi~L~~ge 444 (525)
T 1tf7_A 398 GVTGYAKQ-EEITGLFTNTSDQFMGAHSITDS-HISTITDTIILLQYVE 444 (525)
T ss_dssp HHHHHHHH-TTCEEEEEEECSSSSCCCSSCSS-CCTTTCSEEEEEEEEE
T ss_pred HHHHHHHh-CCCEEEEEECcccccCcccccCc-ccceeeeEEEEEEEEE
Confidence 99999865 699999999998 5 4678899999999886
|
| >3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B* | Back alignment and structure |
|---|
Probab=99.27 E-value=1.5e-12 Score=136.08 Aligned_cols=137 Identities=12% Similarity=0.157 Sum_probs=97.5
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCccCCCh------hhhcc--cEEEEccCCCCCCCCCHHH
Q 006897 94 ARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKKP------AQLRK--ICGFVAQEDNLLPLLTVKE 165 (627)
Q Consensus 94 i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~~~~~------~~~r~--~ig~v~Q~~~l~~~lTV~e 165 (627)
.++|++++|+||||||||||++.|+|+++|.+ |+|.+.|.++... ..+++ .+.+++|+..++|.++|+|
T Consensus 126 ~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~---g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e 202 (328)
T 3e70_C 126 AEKPYVIMFVGFNGSGKTTTIAKLANWLKNHG---FSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYD 202 (328)
T ss_dssp SCSSEEEEEECCTTSSHHHHHHHHHHHHHHTT---CCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHhcC---CEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHH
Confidence 37899999999999999999999999998864 9999999886321 11223 4669999999999999999
Q ss_pred HHHHHHHhcC-------CCCC--HHHHHHHHHHHHHHcCCccccCCcCCccccCCCCCCCHHHHHHHHHHHHHHHHcCCC
Q 006897 166 TLMFSANFRL-------KGMS--HKEKEDRVESLMDELGLTHVAGSFVGDEENRGISGLDSTSALQVIELLASMAKAKQR 236 (627)
Q Consensus 166 ~l~~~~~~~~-------~~~~--~~~~~~~v~~~l~~lgL~~~~~~~~gGe~qrPtsgLD~~~~~~i~~~L~~l~~~~g~ 236 (627)
|+.++..... .+.. .....+.+..+...+. ...|+..||+.+..++++.++.+.++.+.
T Consensus 203 ~l~~~~~~~~d~vliDtaG~~~~~~~l~~eL~~i~ral~------------~de~llvLDa~t~~~~~~~~~~~~~~~~i 270 (328)
T 3e70_C 203 AIQHAKARGIDVVLIDTAGRSETNRNLMDEMKKIARVTK------------PNLVIFVGDALAGNAIVEQARQFNEAVKI 270 (328)
T ss_dssp HHHHHHHHTCSEEEEEECCSCCTTTCHHHHHHHHHHHHC------------CSEEEEEEEGGGTTHHHHHHHHHHHHSCC
T ss_pred HHHHHHhccchhhHHhhccchhHHHHHHHHHHHHHHHhc------------CCCCEEEEecHHHHHHHHHHHHHHHhcCC
Confidence 9998753211 0110 0111111111111111 12367788998889999999999877899
Q ss_pred EEEEEccCc
Q 006897 237 TVVLSIHQP 245 (627)
Q Consensus 237 Tii~~tH~~ 245 (627)
|+|++||..
T Consensus 271 t~iilTKlD 279 (328)
T 3e70_C 271 DGIILTKLD 279 (328)
T ss_dssp CEEEEECGG
T ss_pred CEEEEeCcC
Confidence 999999943
|
| >3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B* | Back alignment and structure |
|---|
Probab=99.27 E-value=1.7e-12 Score=151.82 Aligned_cols=156 Identities=10% Similarity=0.165 Sum_probs=91.8
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCccCCChhhhcccEEEEccCCCCCCCCC
Q 006897 83 PLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKKPAQLRKICGFVAQEDNLLPLLT 162 (627)
Q Consensus 83 ~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~~~~~~~~r~~ig~v~Q~~~l~~~lT 162 (627)
++.|++|+||++++|++++|+||||||||||||+++++.... ..|. .+.. . ...++. -+.++..+.
T Consensus 659 ~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~a--q~g~------~vpa-~--~~~i~~---~d~i~~~ig 724 (918)
T 3thx_B 659 DQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMA--QIGS------YVPA-E--EATIGI---VDGIFTRMG 724 (918)
T ss_dssp SSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHH--HHTC------CBSS-S--EEEEEC---CSEEEEEC-
T ss_pred CceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHHh--hcCc------cccc-h--hhhhhH---HHHHHHhCC
Confidence 457999999999999999999999999999999998653211 0011 0000 0 111222 233455566
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccCCcCCccccCCCCCCCHHHHHHHH-HHHHHHHHcCCCEEEEE
Q 006897 163 VKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAGSFVGDEENRGISGLDSTSALQVI-ELLASMAKAKQRTVVLS 241 (627)
Q Consensus 163 V~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~gGe~qrPtsgLD~~~~~~i~-~~L~~l~~~~g~Tii~~ 241 (627)
+.|++..+.. .. ..+. .+...++..+. + ..-++-.| |++|||+.....+. .+++.++++.|.|+|++
T Consensus 725 ~~d~l~~~~s----tf-s~em-~~~~~il~~a~--~-p~LlLLDE---P~~GlD~~~~~~i~~~il~~L~~~~g~tvl~v 792 (918)
T 3thx_B 725 AADNIYKGRS----TF-MEEL-TDTAEIIRKAT--S-QSLVILDE---LGRGTSTHDGIAIAYATLEYFIRDVKSLTLFV 792 (918)
T ss_dssp ---------C----CH-HHHH-HHHHHHHHHCC--T-TCEEEEES---TTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred hHHHHHHhHH----Hh-hHHH-HHHHHHHHhcc--C-CCEEEEeC---CCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEE
Confidence 7777754321 11 1222 22333443321 0 00011222 99999999999987 77888876569999999
Q ss_pred ccCccHHHHHHhhhhee-ecCCeEEe
Q 006897 242 IHQPSYRILQYISKFLI-LSRGSVVH 266 (627)
Q Consensus 242 tH~~~~~i~~~~D~i~v-L~~G~iv~ 266 (627)
||+++ +.+++|+.-- +.++++.+
T Consensus 793 TH~~e--l~~l~~~~~~~v~n~~~~~ 816 (918)
T 3thx_B 793 THYPP--VCELEKNYSHQVGNYHMGF 816 (918)
T ss_dssp CSCGG--GGGHHHHTTTTEEEEEEEE
T ss_pred eCcHH--HHHHHhhcccceEEEEEEE
Confidence 99986 5688998753 56666654
|
| >1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=4.2e-13 Score=154.70 Aligned_cols=149 Identities=18% Similarity=0.173 Sum_probs=91.5
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC-CCCCccceEEECCccCCChhhhcccEEEEccCCCCCCCC
Q 006897 83 PLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVR-DQDFDPRSITVNCHQIKKPAQLRKICGFVAQEDNLLPLL 161 (627)
Q Consensus 83 ~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~-~~~~~~G~i~i~g~~~~~~~~~r~~ig~v~Q~~~l~~~l 161 (627)
++.+++|+||+ |++++|+||||||||||||+|+|+.. +. .|.+. + ..+..+++++| +++.+
T Consensus 565 ~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~---~G~~v----p-----a~~~~i~~v~~---i~~~~ 626 (765)
T 1ewq_A 565 TEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQ---VGSFV----P-----AEEAHLPLFDG---IYTRI 626 (765)
T ss_dssp SCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHT---TTCCB----S-----SSEEEECCCSE---EEEEC
T ss_pred CceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcc---cCcee----e-----hhccceeeHHH---hhccC
Confidence 35699999999 99999999999999999999999864 32 25431 1 12346888877 67778
Q ss_pred CHHHHHHHHHHhcCCCCCHH-HHHHHHHHHHHHcCCccccCCcCCccccCCCCCCCHHHH-HHHHHHHHHHHHcCCCEEE
Q 006897 162 TVKETLMFSANFRLKGMSHK-EKEDRVESLMDELGLTHVAGSFVGDEENRGISGLDSTSA-LQVIELLASMAKAKQRTVV 239 (627)
Q Consensus 162 TV~e~l~~~~~~~~~~~~~~-~~~~~v~~~l~~lgL~~~~~~~~gGe~qrPtsgLD~~~~-~~i~~~L~~l~~~~g~Tii 239 (627)
++.||+..+. +.- .....+..+++.+. ...-++-.|.-|+|++||+.+. ..+++.|++ .|.|+|
T Consensus 627 ~~~d~l~~g~-------S~~~~e~~~la~il~~a~---~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~----~g~~vl 692 (765)
T 1ewq_A 627 GASDDLAGGK-------STFMVEMEEVALILKEAT---ENSLVLLDEVGRGTSSLDGVAIATAVAEALHE----RRAYTL 692 (765)
T ss_dssp CC------CC-------SHHHHHHHHHHHHHHHCC---TTEEEEEESTTTTSCHHHHHHHHHHHHHHHHH----HTCEEE
T ss_pred CHHHHHHhcc-------cHHHHHHHHHHHHHHhcc---CCCEEEEECCCCCCCCcCHHHHHHHHHHHHHh----CCCEEE
Confidence 9999987642 111 11112233333211 1111124555556999999875 578887765 378999
Q ss_pred EEccCccHHHHHHhhhheeecCCeEEee
Q 006897 240 LSIHQPSYRILQYISKFLILSRGSVVHY 267 (627)
Q Consensus 240 ~~tH~~~~~i~~~~D~i~vL~~G~iv~~ 267 (627)
++||+.+ +.+++ .-.+.++++...
T Consensus 693 ~~TH~~~--l~~~~--~~~v~n~~~~~~ 716 (765)
T 1ewq_A 693 FATHYFE--LTALG--LPRLKNLHVAAR 716 (765)
T ss_dssp EECCCHH--HHTCC--CTTEEEEEEEEE
T ss_pred EEeCCHH--HHHhh--hhcceEEEEEEE
Confidence 9999975 44555 223444555443
|
| >2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.23 E-value=7.4e-12 Score=132.39 Aligned_cols=54 Identities=17% Similarity=0.129 Sum_probs=47.6
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeCCHHHH
Q 006897 211 GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGSLELL 273 (627)
Q Consensus 211 PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~ 273 (627)
|+++||+..+..+++.|+++. .|+|++|| ++ + .+|++++|++|+++..|+++++
T Consensus 301 p~s~LD~~~~~~l~~~l~~~~----qt~i~~th-~~-~---~~~~i~~l~~G~i~~~g~~~~~ 354 (359)
T 2o5v_A 301 FTAELDPHRRQYLLDLAASVP----QAIVTGTE-LA-P---GAALTLRAQAGRFTPVADEEMQ 354 (359)
T ss_dssp GGGCCCHHHHHHHHHHHHHSS----EEEEEESS-CC-T---TCSEEEEEETTEEEECCCTTTS
T ss_pred ccccCCHHHHHHHHHHHHhcC----cEEEEEEe-cc-c---cCCEEEEEECCEEEecCCHHHH
Confidence 899999999999999998762 59999999 44 2 8999999999999999998765
|
| >1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1 | Back alignment and structure |
|---|
Probab=99.17 E-value=3.8e-14 Score=150.92 Aligned_cols=162 Identities=14% Similarity=0.086 Sum_probs=98.0
Q ss_pred eeeceEEEEeC--CeEEEEECCCCCcHHHHHHHHHcCCCCCC-CccceEEEC----CccCC-ChhhhcccEEEEccCCCC
Q 006897 86 ILKSVSFEARD--SEILAVVGPSGTGKSSLLRIISGRVRDQD-FDPRSITVN----CHQIK-KPAQLRKICGFVAQEDNL 157 (627)
Q Consensus 86 iL~~vsl~i~~--Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~-~~~G~i~i~----g~~~~-~~~~~r~~ig~v~Q~~~l 157 (627)
+.+.|+++|++ |+.++|+||||||||||+|+|+|+++|.. ...|++.++ |.++. ...++ +.|++++|+..+
T Consensus 157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~~~~~~~~~~~~~~~~-~~I~~~~q~~~~ 235 (365)
T 1lw7_A 157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGDEQAMQYSDY-PQMALGHQRYID 235 (365)
T ss_dssp GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHHHSSSSCTTSSCTTTH-HHHHHHHHHHHH
T ss_pred ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHHhhcCCCcccCChhHH-HHHHHHHHHHHH
Confidence 46789999999 99999999999999999999999998742 011666653 33321 12333 457888886544
Q ss_pred CCCCCHHHHHHHHHHhcCCCCCHHHH-----------HHHHHHHHHHcCCccccCCcCCcccc------CCCCCCCHHHH
Q 006897 158 LPLLTVKETLMFSANFRLKGMSHKEK-----------EDRVESLMDELGLTHVAGSFVGDEEN------RGISGLDSTSA 220 (627)
Q Consensus 158 ~~~lTV~e~l~~~~~~~~~~~~~~~~-----------~~~v~~~l~~lgL~~~~~~~~gGe~q------rPtsgLD~~~~ 220 (627)
+. .|+.||+.+.. ...... ...+..++...+.+- ..-+|.. -++.++|+..+
T Consensus 236 ~~-~t~~~nl~~~~------~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l----llLdE~~~p~~~~g~~~sld~~~r 304 (365)
T 1lw7_A 236 YA-VRHSHKIAFID------TDFITTQAFCIQYEGKAHPFLDSMIKEYPFDV----TILLKNNTEWVDDGLRSLGSQKQR 304 (365)
T ss_dssp HH-HHHCSSEEEES------SCHHHHHHHHHHHHSCCCHHHHHHHHHSCCSE----EEEEECCCC-----------CCSH
T ss_pred HH-HhccCCEEEEe------CCchHHHHHHHHHcCCCCHHHHHHHhhcCCCE----EEECCCCCCcccCCCcCCccHHHH
Confidence 43 46666654320 011000 011122222112111 1112211 14568999999
Q ss_pred HHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecC
Q 006897 221 LQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSR 261 (627)
Q Consensus 221 ~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~ 261 (627)
..+.+.|+++.++.|.+||+++|. + +..+++|++.++++
T Consensus 305 ~~l~~~l~~l~~~~~~~ililde~-~-~~~r~~~~i~~i~~ 343 (365)
T 1lw7_A 305 QQFQQLLKKLLDKYKVPYIEIESP-S-YLDRYNQVKAVIEK 343 (365)
T ss_dssp HHHHHHHHHHHHGGGCCCEEEECS-S-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCEEEeCCC-C-HHHHHHHHHHHHHH
Confidence 999999999876668999999985 4 36788998888764
|
| >2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.16 E-value=3.5e-13 Score=144.79 Aligned_cols=89 Identities=20% Similarity=0.221 Sum_probs=61.7
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeE--EEEECCCCCcHHHHHHHHHcCCCCCCCccceEEE
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEI--LAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITV 133 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~--~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i 133 (627)
.+++++ ++.|+ +.+ |+++|+++++|++ +||+||||||||||+|+|+|+.-. |.-.
T Consensus 16 ~l~~~~-~~~y~---------------~~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l~-----g~~~- 72 (427)
T 2qag_B 16 TVPLAG-HVGFD---------------SLP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKFE-----GEPA- 72 (427)
T ss_dssp -CCCCC-CC-CC-----------------C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC-----------
T ss_pred eEEEee-EEEEC---------------Cee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCcccc-----CCcC-
Confidence 356666 77772 234 9999999999999 999999999999999999998421 2111
Q ss_pred CCccCCChhhhcccEEEEccCCCCCCCCCHHHHHHHH
Q 006897 134 NCHQIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFS 170 (627)
Q Consensus 134 ~g~~~~~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~ 170 (627)
.. ..+...++.++|++|++.+++.+||.||+.++
T Consensus 73 ~~---~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g 106 (427)
T 2qag_B 73 TH---TQPGVQLQSNTYDLQESNVRLKLTIVSTVGFG 106 (427)
T ss_dssp -----CCSSCEEEEEEEEEEC--CEEEEEEEEEECCC
T ss_pred CC---CCccceEeeEEEEeecCccccccchhhhhhhh
Confidence 00 01122355799999999888889999998775
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B | Back alignment and structure |
|---|
Probab=99.16 E-value=9.5e-11 Score=123.31 Aligned_cols=47 Identities=17% Similarity=0.220 Sum_probs=42.5
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeec
Q 006897 211 GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILS 260 (627)
Q Consensus 211 PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~ 260 (627)
||+|||+..+..+++.|+++.++ |.|||++|||++ +.+.||++++|+
T Consensus 281 p~~~LD~~~~~~l~~~l~~~~~~-~~~vi~~sH~~~--~~~~~d~~~~l~ 327 (339)
T 3qkt_A 281 PTPYLDEERRRKLITIMERYLKK-IPQVILVSHDEE--LKDAADHVIRIS 327 (339)
T ss_dssp CCTTCCHHHHHHHHHHHHHTGGG-SSEEEEEESCGG--GGGGCSEEEEEE
T ss_pred CCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEEChHH--HHHhCCEEEEEE
Confidence 99999999999999999998654 789999999965 678999999985
|
| >4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.15 E-value=2.1e-11 Score=135.61 Aligned_cols=55 Identities=24% Similarity=0.334 Sum_probs=48.8
Q ss_pred CCccccC--------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCC
Q 006897 204 VGDEENR--------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRG 262 (627)
Q Consensus 204 ~gGe~qr--------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G 262 (627)
+|||+|| ||+|||+.++..+.+.|+++++ |+|||+|||+++ +...||++++|++|
T Consensus 399 SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~--~~~vi~itH~~~--~~~~~d~~~~~~~~ 473 (517)
T 4ad8_A 399 SGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD--TRQVLVVTHLAQ--IAARAHHHYKVEKQ 473 (517)
T ss_dssp CSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHH--HSEEEEECCCHH--HHHHSSEEEEEECC
T ss_pred CHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhC--CCEEEEEecCHH--HHHhCCEEEEEecc
Confidence 7999987 7999999999999999999974 789999999986 45679999999654
|
| >2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.15 E-value=5.3e-12 Score=130.77 Aligned_cols=113 Identities=14% Similarity=0.170 Sum_probs=72.9
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEE---CCccCCCh-hhhc-ccEEEEccCCCCC-----CCCC
Q 006897 93 EARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITV---NCHQIKKP-AQLR-KICGFVAQEDNLL-----PLLT 162 (627)
Q Consensus 93 ~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i---~g~~~~~~-~~~r-~~ig~v~Q~~~l~-----~~lT 162 (627)
++.+|++++|+||||||||||+|+|+ +.+|.. |+|.+ +|++.... ...+ +.+|||+|++.+. +.+|
T Consensus 161 ~~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~---G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt 236 (302)
T 2yv5_A 161 DYLEGFICILAGPSGVGKSSILSRLT-GEELRT---QEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVK 236 (302)
T ss_dssp HHTTTCEEEEECSTTSSHHHHHHHHH-SCCCCC---SCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSC
T ss_pred hhccCcEEEEECCCCCCHHHHHHHHH-HhhCcc---cccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCC
Confidence 34579999999999999999999999 888753 99999 88875432 2223 3689999998543 6789
Q ss_pred HHHHH--HHH----HHhcCCC-CCHHHHHHHHHHHHHHcCCcc-ccCCcC---CccccC
Q 006897 163 VKETL--MFS----ANFRLKG-MSHKEKEDRVESLMDELGLTH-VAGSFV---GDEENR 210 (627)
Q Consensus 163 V~e~l--~~~----~~~~~~~-~~~~~~~~~v~~~l~~lgL~~-~~~~~~---gGe~qr 210 (627)
+ ||+ .|+ ..++..+ ...++...+++++++.++|.+ ..+++. .|++||
T Consensus 237 ~-e~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~~~ls~~~~R 294 (302)
T 2yv5_A 237 P-REVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYLKIIKVYLEE 294 (302)
T ss_dssp G-GGGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHHHHHTTCCCTT
T ss_pred H-HHHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 9 888 453 1111222 123344567999999999975 444332 445554
|
| >2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1 | Back alignment and structure |
|---|
Probab=99.15 E-value=6.2e-13 Score=147.12 Aligned_cols=164 Identities=12% Similarity=0.119 Sum_probs=102.3
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCccCCChhhhcccEEEEccCCC-------
Q 006897 84 LHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKKPAQLRKICGFVAQEDN------- 156 (627)
Q Consensus 84 ~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~~~~~~~~r~~ig~v~Q~~~------- 156 (627)
..+++++++.+++|+.++|+|||||||||||++|+|+++|+. |.|+++|.+..... -...++++.|...
T Consensus 247 ~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~---giitied~~E~~~~-~~~~v~~~~r~~~~~~~~~~ 322 (511)
T 2oap_1 247 SGVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDA---KVVSIEDTREIKLY-HENWIAEVTRTGMGEGEIDM 322 (511)
T ss_dssp HHHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTC---CEEEEESSCCCCCC-CSSEEEEECBCCSSSCCBCH
T ss_pred HHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCC---CEEEEcCcccccCC-CCCeEEEEeecccccCCcCH
Confidence 457899999999999999999999999999999999998864 99999886521111 1234555555432
Q ss_pred ---------------CCCCCCHHHHHHHHHHhcCCC--CCHHHHHHHHHHHHHHcCC-----cc----cc-------CCc
Q 006897 157 ---------------LLPLLTVKETLMFSANFRLKG--MSHKEKEDRVESLMDELGL-----TH----VA-------GSF 203 (627)
Q Consensus 157 ---------------l~~~lTV~e~l~~~~~~~~~~--~~~~~~~~~v~~~l~~lgL-----~~----~~-------~~~ 203 (627)
++..++..|++.+........ .+. .....+.++++++.. .. .. ..+
T Consensus 323 ~~~l~~~LR~~PD~iivgEir~~E~~~~l~a~~tGh~~~sT-~Ha~~~~~~l~Rl~~~~~~v~~~l~~~l~~vi~~~~~~ 401 (511)
T 2oap_1 323 YDLLRAALRQRPDYIIVGEVRGREAQTLFQAMSTGHASYST-LHAGDINQMVYRLESEPLKVPRSMLQFLDIALVQTMWV 401 (511)
T ss_dssp HHHHHTTGGGCCSEEEESCCCSTHHHHHHHHHHTTCEEEEE-EECSSHHHHHHHHHSTTTCCCGGGGGGCCEEEEEEEEE
T ss_pred HHHHHHhhccCCCeEEeCCcCHHHHHHHHHhhcCCCCcccc-cccCCHHHHHHHHHhcccccHHHHHhhccEEEEEEEEE
Confidence 123445555444322211100 000 000112233333322 11 11 123
Q ss_pred CCccccC------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEE--EccCccHHHHHHhh
Q 006897 204 VGDEENR------GISGLDSTSALQVIELLASMAKAKQRTVVL--SIHQPSYRILQYIS 254 (627)
Q Consensus 204 ~gGe~qr------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~--~tH~~~~~i~~~~D 254 (627)
.||+++| -++|||+.....+++.|.++.+ .|+|+++ +||+++ ++.+.|+
T Consensus 402 s~G~~~R~~~ai~E~~GlDp~~~~~~~~~l~~~~~-~~~tii~~~~sH~l~-ei~~~~g 458 (511)
T 2oap_1 402 RGNTRLRRTKEVNEILGIDPVDKNLLVNQFVKWDP-KEDKHIEVSMPKKLE-KMADFLG 458 (511)
T ss_dssp SSSCEEEEEEEEEEEEECCSSSSCCEEEEEEEEET-TTTEEEECSCCTHHH-HHHHHHT
T ss_pred eCCCceEEEEEEEEEcCcccCCCeEEEEEeEEEcc-cCCEEEEcccHHHHH-HHHHHcC
Confidence 4788766 3789999888878888877754 4789885 899998 5777764
|
| >2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V | Back alignment and structure |
|---|
Probab=99.14 E-value=1.8e-11 Score=128.87 Aligned_cols=131 Identities=18% Similarity=0.115 Sum_probs=87.1
Q ss_pred eeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC-CCCCccceEEEC-CccCCChhhhcccEEEEccCCCCCCCCCHH
Q 006897 87 LKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVR-DQDFDPRSITVN-CHQIKKPAQLRKICGFVAQEDNLLPLLTVK 164 (627)
Q Consensus 87 L~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~-~~~~~~G~i~i~-g~~~~~~~~~r~~ig~v~Q~~~l~~~lTV~ 164 (627)
++++++. .+|++++|+||||||||||+|+|+|+.+ +.. |+|.++ |++.. ...++.+++++|+..+++..+|+
T Consensus 206 l~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~---G~I~~~~G~g~~--tt~~~~i~~v~q~~~l~dtpgv~ 279 (358)
T 2rcn_A 206 LKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEILT---NDVSNVSGLGQH--TTTAARLYHFPHGGDVIDSPGVR 279 (358)
T ss_dssp HHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCCC---C---------------CCCEEEECTTSCEEEECHHHH
T ss_pred HHHHHHh-cCCCEEEEECCCCccHHHHHHHHhcccccccc---CCccccCCCCcc--ceEEEEEEEECCCCEecCcccHH
Confidence 5666664 4899999999999999999999999998 753 999887 65521 23456799999998888888998
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccCCcC---CccccC--CCCCCCHHHHHHH-HHHHHHH
Q 006897 165 ETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAGSFV---GDEENR--GISGLDSTSALQV-IELLASM 230 (627)
Q Consensus 165 e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~---gGe~qr--PtsgLD~~~~~~i-~~~L~~l 230 (627)
|+. +.+.++++..+++.++++.+|+.+..+... .|+++| --.|+++..+.+- .++++++
T Consensus 280 e~~-------l~~l~~~e~~~~~~e~l~~~gl~~f~~~~~~~lSG~~~r~ala~gli~~~R~~~y~~l~~e~ 344 (358)
T 2rcn_A 280 EFG-------LWHLEPEQITQGFVEFHDYLGHCKYRDCKHDADPGCAIREAVENGAIAETRFENYHRILESM 344 (358)
T ss_dssp TCC-------CCCCCHHHHHHTSGGGGGGTTCSSSTTCCSSSCTTCHHHHHHHHTSSCHHHHHHHHHHHHHH
T ss_pred Hhh-------hcCCCHHHHHHHHHHHHHHcCCchhcCCCcccCCHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 841 223456667778889999999987665432 277777 2234444445444 4555555
|
| >2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.13 E-value=1.4e-11 Score=132.73 Aligned_cols=158 Identities=17% Similarity=0.159 Sum_probs=81.3
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
+|+++||+++|. .+.+++|+||+| +|+||||||||||+++|+|...+.... |.+.+++
T Consensus 11 ~l~~~~l~~~y~---------------~~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~~-~~~~~~~ 68 (418)
T 2qag_C 11 YVGFANLPNQVY---------------RKSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPEY-PGPSHRI 68 (418)
T ss_dssp ----CCCCCCTT---------------TTTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCCC-CSCC---
T ss_pred cEEEEecceeEC---------------CEEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCCC-CCcccCC
Confidence 689999999883 346899999998 999999999999999999998753211 2222221
Q ss_pred ccCCChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCcc--ccCCcCCccc-----
Q 006897 136 HQIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTH--VAGSFVGDEE----- 208 (627)
Q Consensus 136 ~~~~~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~--~~~~~~gGe~----- 208 (627)
.+ ...++.+++++|++.+++.+||.||+.++..... ........+.+++.++..-... ++..+..+.+
T Consensus 69 ~~----t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~-~~~~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL 143 (418)
T 2qag_C 69 KK----TVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDN-SNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCL 143 (418)
T ss_dssp ------CCEEEEEECC------CEEEEEEECC------------CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEE
T ss_pred cc----ceeeeeEEEEEecCCcccceeeeechhhhhhccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEE
Confidence 11 1123568999999888888999999988643210 0001112222333333221111 1112222222
Q ss_pred --cCCC-CCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCcc
Q 006897 209 --NRGI-SGLDSTSALQVIELLASMAKAKQRTVVLSIHQPS 246 (627)
Q Consensus 209 --qrPt-sgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~ 246 (627)
..|| .+||+... +.++++. .+.++|++.|..+
T Consensus 144 ~ldePt~~~L~~~d~----~~lk~L~--~~v~iIlVinK~D 178 (418)
T 2qag_C 144 YFIAPSGHGLKPLDI----EFMKRLH--EKVNIIPLIAKAD 178 (418)
T ss_dssp EECCC-CCSCCHHHH----HHHHHHT--TTSEEEEEEESTT
T ss_pred EEecCcccCCCHHHH----HHHHHHh--ccCcEEEEEEccc
Confidence 1288 69998763 4445553 2678888888654
|
| >1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.12 E-value=3.9e-11 Score=119.17 Aligned_cols=155 Identities=13% Similarity=0.203 Sum_probs=84.9
Q ss_pred eeeceE-EEEeCCeEEEEECCCCCcHHHHHHHHHc--CCCCC--CCccceEEECCccCCChh---hhcccEEEEccCCCC
Q 006897 86 ILKSVS-FEARDSEILAVVGPSGTGKSSLLRIISG--RVRDQ--DFDPRSITVNCHQIKKPA---QLRKICGFVAQEDNL 157 (627)
Q Consensus 86 iL~~vs-l~i~~Ge~~aIiGpnGsGKSTLl~~L~G--l~~~~--~~~~G~i~i~g~~~~~~~---~~r~~ig~v~Q~~~l 157 (627)
.||.+- .-+++|++++|+||||||||||++.|++ ..++. ....|.+++++.+..... ...+.+++.+|+
T Consensus 12 ~LD~~l~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~--- 88 (243)
T 1n0w_A 12 ELDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSD--- 88 (243)
T ss_dssp HHHHHTTTSEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHH---
T ss_pred HHHHhhcCCCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHH---
Confidence 355443 5699999999999999999999999999 45431 012388899887632222 233445665542
Q ss_pred CCCCCHHHHHHHHHHhcCCCCCHHHHHH---HHHHHHHHcCCcc-ccCCcCCccccCCCCCCCHH-------H-----HH
Q 006897 158 LPLLTVKETLMFSANFRLKGMSHKEKED---RVESLMDELGLTH-VAGSFVGDEENRGISGLDST-------S-----AL 221 (627)
Q Consensus 158 ~~~lTV~e~l~~~~~~~~~~~~~~~~~~---~v~~~l~~lgL~~-~~~~~~gGe~qrPtsgLD~~-------~-----~~ 221 (627)
+.+|+.+. ...+..+..+ .+.+.++..+.+- ..|. |++.+|+. . ..
T Consensus 89 -----~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~lliiD~--------~~~~~~~~~~~~~~~~~r~~~~~ 150 (243)
T 1n0w_A 89 -----VLDNVAYA-----RAFNTDHQTQLLYQASAMMVESRYALLIVDS--------ATALYRTDYSGRGELSARQMHLA 150 (243)
T ss_dssp -----HHHTEEEE-----ECCSHHHHHHHHHHHHHHHHHSCEEEEEEET--------SSGGGC-------CHHHHHHHHH
T ss_pred -----HhhCeEEE-----ecCCHHHHHHHHHHHHHHHhcCCceEEEEeC--------chHHHHHHhcCCccHHHHHHHHH
Confidence 22332211 0111122111 2333333211110 0111 44555543 2 45
Q ss_pred HHHHHHHHHHHcCCCEEEEEccCccHHHHH-------------------HhhhheeecCC
Q 006897 222 QVIELLASMAKAKQRTVVLSIHQPSYRILQ-------------------YISKFLILSRG 262 (627)
Q Consensus 222 ~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~-------------------~~D~i~vL~~G 262 (627)
++++.|++++++.|+|||+++|.... ... .||.+++|++|
T Consensus 151 ~~~~~l~~~~~~~~~tvi~~~h~~~~-~~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~~ 209 (243)
T 1n0w_A 151 RFLRMLLRLADEFGVAVVITNQVVAQ-VDGAAMFAADPKKPIGGNIIAHASTTRLYLRKG 209 (243)
T ss_dssp HHHHHHHHHHHHHCCEEEEEC--------------------------CCTTCEEEEEEEC
T ss_pred HHHHHHHHHHHHcCCEEEEEeeeeec-CCCccccCCCcccCCccChhhhcCcEEEEEEEc
Confidence 67777888887779999999997652 332 78999988865
|
| >2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.12 E-value=1.1e-12 Score=126.61 Aligned_cols=54 Identities=20% Similarity=0.303 Sum_probs=45.3
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCccCCChhhhcccEEEEccCC
Q 006897 97 SEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKKPAQLRKICGFVAQED 155 (627)
Q Consensus 97 Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~~~~~~~~r~~ig~v~Q~~ 155 (627)
||+++|+||||||||||+++|+|+++ +. | |.++|.+.......++.+||++|+.
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~~---G-i~~~g~~~~~~~~~~~~ig~~~~~~ 54 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-SS---G-VPVDGFYTEEVRQGGRRIGFDVVTL 54 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-HT---T-CCCEEEECCEEETTSSEEEEEEEET
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-cC---C-EEEcCEecchhHhhhceEEEEEEec
Confidence 78999999999999999999999987 53 8 8888877533345678899999974
|
| >1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.12 E-value=5.1e-12 Score=130.83 Aligned_cols=97 Identities=22% Similarity=0.268 Sum_probs=66.1
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEE---CCccCCChh-hhc-ccEEEEccCCC----------
Q 006897 92 FEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITV---NCHQIKKPA-QLR-KICGFVAQEDN---------- 156 (627)
Q Consensus 92 l~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i---~g~~~~~~~-~~r-~~ig~v~Q~~~---------- 156 (627)
|++.+|++++|+||||||||||+|+|+|+.+|+. |+|.+ +|+++.... ..+ +.+|||+|.+.
T Consensus 164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~~---G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~ 240 (301)
T 1u0l_A 164 KEYLKGKISTMAGLSGVGKSSLLNAINPGLKLRV---SEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIE 240 (301)
T ss_dssp HHHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC----------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSC
T ss_pred HHHhcCCeEEEECCCCCcHHHHHHHhcccccccc---cceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCC
Confidence 3456899999999999999999999999999864 99999 888754321 222 36899999974
Q ss_pred ------CCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCc
Q 006897 157 ------LLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLT 197 (627)
Q Consensus 157 ------l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~ 197 (627)
++|.+|+ ||+.|+. +. ...+...++.++|+.+||.
T Consensus 241 ~~~~~~l~~~~~~-~n~~~~~-~~----~~~e~~~~v~~~l~~~~L~ 281 (301)
T 1u0l_A 241 PEELKHYFKEFGD-KQCFFSD-CN----HVDEPECGVKEAVENGEIA 281 (301)
T ss_dssp HHHHGGGSTTSSS-CCCSSTT-CC----SSSCSSCHHHHHHHHTSSC
T ss_pred HHHHHHHHHhccc-ccCcCCC-Cc----CCCCCCcHHHHHHHcCCCC
Confidence 5888999 9998752 11 1233456789999999994
|
| >1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=99.10 E-value=2.7e-13 Score=130.10 Aligned_cols=72 Identities=14% Similarity=0.176 Sum_probs=53.5
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCccCCChhhhcccEEEEccCCCCCCCCCHHHHHHHHH
Q 006897 93 EARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSA 171 (627)
Q Consensus 93 ~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~~~~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~ 171 (627)
.+++|++++|+||||||||||+++|+|. ++ .|.|.++|.++......++.++|++|+.. +.++|.||+.+.+
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~--~~---~g~i~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~v~~~l~~~~ 76 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL--PG---VPKVHFHSDDLWGYIKHGRIDPWLPQSHQ--QNRMIMQIAADVA 76 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC--SS---SCEEEECTTHHHHTCCSSCCCTTSSSHHH--HHHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc--cC---CCeEEEcccchhhhhhcccccCCccchhh--hhHHHHHHHHHHH
Confidence 3679999999999999999999999998 33 39999998764211112344678887644 3578999997754
|
| >3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=2.9e-11 Score=127.83 Aligned_cols=128 Identities=20% Similarity=0.170 Sum_probs=83.2
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCccCCChhhhcccEEEEccCCCCCCCCCHHHHHHHHHH
Q 006897 93 EARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSAN 172 (627)
Q Consensus 93 ~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~~~~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~ 172 (627)
...+|++++|+|||||||||||++|+|++++.. .|.|...+.++ . ...+...++++|........+..+.|.-+.
T Consensus 119 ~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~--~~~i~t~ed~~-e-~~~~~~~~~v~q~~~~~~~~~~~~~La~aL- 193 (356)
T 3jvv_A 119 SDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTK--YHHILTIEDPI-E-FVHESKKCLVNQREVHRDTLGFSEALRSAL- 193 (356)
T ss_dssp HHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHC--CCEEEEEESSC-C-SCCCCSSSEEEEEEBTTTBSCHHHHHHHHT-
T ss_pred HhCCCCEEEEECCCCCCHHHHHHHHHhcccCCC--CcEEEEccCcH-H-hhhhccccceeeeeeccccCCHHHHHHHHh-
Confidence 678999999999999999999999999998752 26665544442 1 123344567777654444456655333221
Q ss_pred hcCCCCCHHHHHHHHHHHHHHcCCccccCCcCCccccCCCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHH
Q 006897 173 FRLKGMSHKEKEDRVESLMDELGLTHVAGSFVGDEENRGISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQY 252 (627)
Q Consensus 173 ~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~gGe~qrPtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~ 252 (627)
+ ...+-++-|| |+ |+.+ .+.+.+.+. .|.||++++|+.+. .+.
T Consensus 194 -~-----------------------~~PdvillDE---p~---d~e~----~~~~~~~~~-~G~~vl~t~H~~~~--~~~ 236 (356)
T 3jvv_A 194 -R-----------------------EDPDIILVGE---MR---DLET----IRLALTAAE-TGHLVFGTLHTTSA--AKT 236 (356)
T ss_dssp -T-----------------------SCCSEEEESC---CC---SHHH----HHHHHHHHH-TTCEEEEEESCSSH--HHH
T ss_pred -h-----------------------hCcCEEecCC---CC---CHHH----HHHHHHHHh-cCCEEEEEEccChH--HHH
Confidence 1 1122222344 44 5554 344444444 59999999999983 488
Q ss_pred hhhheeecCC
Q 006897 253 ISKFLILSRG 262 (627)
Q Consensus 253 ~D~i~vL~~G 262 (627)
+||++.|..|
T Consensus 237 ~dRli~l~~~ 246 (356)
T 3jvv_A 237 IDRVVDVFPA 246 (356)
T ss_dssp HHHHHHTSCH
T ss_pred HHHHhhhcCc
Confidence 9999999665
|
| >1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=1e-12 Score=136.57 Aligned_cols=96 Identities=14% Similarity=0.285 Sum_probs=79.1
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEE-------------------eCCeEEEEECCCCCcHHHHHHH
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEA-------------------RDSEILAVVGPSGTGKSSLLRI 116 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i-------------------~~Ge~~aIiGpnGsGKSTLl~~ 116 (627)
+|+++||++.|. ++++++++.+ ++|+++||+||||||||||+++
T Consensus 37 ~i~~~~v~~~y~-----------------~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~ 99 (308)
T 1sq5_A 37 DLSLEEVAEIYL-----------------PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARV 99 (308)
T ss_dssp TCCHHHHHHTHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHH
T ss_pred ccchHhHHHHHH-----------------HHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHH
Confidence 588999999882 4789999988 9999999999999999999999
Q ss_pred HHcCCC--CCCCccceEEE---CCccCCChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhc
Q 006897 117 ISGRVR--DQDFDPRSITV---NCHQIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFR 174 (627)
Q Consensus 117 L~Gl~~--~~~~~~G~i~i---~g~~~~~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~ 174 (627)
|+|++. |++ |+|.+ +|... . ...++.+|++ |+..+++.+++.+++.+...++
T Consensus 100 L~~~l~~~~~~---G~i~vi~~d~~~~-~-~~~~~~~~~v-q~~~~~~~~~~~~~~~~~~~l~ 156 (308)
T 1sq5_A 100 LQALLSRWPEH---RRVELITTDGFLH-P-NQVLKERGLM-KKKGFPESYDMHRLVKFVSDLK 156 (308)
T ss_dssp HHHHHTTSTTC---CCEEEEEGGGGBC-C-HHHHHHHTCT-TCTTSGGGBCHHHHHHHHHHHT
T ss_pred HHHHHhhCCCC---CeEEEEecCCccC-c-HHHHHhCCEe-ecCCCCCCccHHHHHHHHHHHh
Confidence 999987 653 99999 88763 2 2345568888 8777778899999998876543
|
| >3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.07 E-value=2.4e-11 Score=142.05 Aligned_cols=139 Identities=20% Similarity=0.318 Sum_probs=99.4
Q ss_pred HHHHHcCCCCCCCccceEEECCccCCChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCC--C----HHHHHHHH
Q 006897 114 LRIISGRVRDQDFDPRSITVNCHQIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGM--S----HKEKEDRV 187 (627)
Q Consensus 114 l~~L~Gl~~~~~~~~G~i~i~g~~~~~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~--~----~~~~~~~v 187 (627)
..|..++++|. .++|.++|+++.. +..+++.|++.|......... . ..+..++.
T Consensus 385 ~~C~g~rl~~~---~~~V~i~G~~i~~-----------------~~~~~v~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~ 444 (916)
T 3pih_A 385 SVCGGRRLNRE---ALSVKINGLNIHE-----------------FTELSISEELEFLKNLNLTEREREIVGELLKEIEKR 444 (916)
T ss_dssp TTTCSCCBCTT---GGGEEETTEEHHH-----------------HHHSBHHHHHHHHHSCCCCTTTTTTHHHHHHHHHHH
T ss_pred hhcccccCChH---hcCcEECCccHHH-----------------hhhCCHHHHHHHHHhccCcHHHHHHHHhhHHHHHHH
Confidence 34445566654 3889988877421 234577777776432211110 0 00112334
Q ss_pred HHHHHHcCCccc-----cCCcCCccccC--------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEc
Q 006897 188 ESLMDELGLTHV-----AGSFVGDEENR--------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSI 242 (627)
Q Consensus 188 ~~~l~~lgL~~~-----~~~~~gGe~qr--------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~t 242 (627)
.+.|..+||... ..+++|||+|| ||+|||+.....++++|+++++ .|.|||+|+
T Consensus 445 ~~~L~~vgL~~l~l~r~~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~-~G~TvivVt 523 (916)
T 3pih_A 445 LEFLVDVGLEYLTLSRSATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRD-LGNTVIVVE 523 (916)
T ss_dssp HHHHHTTTCTTCBTTSBGGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTT-TTCEEEEEC
T ss_pred HHHHHHcCCccccccCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHh-cCCEEEEEe
Confidence 567888998643 34667999999 9999999999999999999975 599999999
Q ss_pred cCccHHHHHHhhhheee------cCCeEEeeCCHHHHHH
Q 006897 243 HQPSYRILQYISKFLIL------SRGSVVHYGSLELLEE 275 (627)
Q Consensus 243 H~~~~~i~~~~D~i~vL------~~G~iv~~G~~~~~~~ 275 (627)
||++ ....||+|++| ++|++++.|+++++.+
T Consensus 524 Hd~~--~~~~aD~ii~lgpgag~~~G~iv~~G~~~e~~~ 560 (916)
T 3pih_A 524 HDEE--VIRNADHIIDIGPGGGTNGGRVVFQGTVDELLK 560 (916)
T ss_dssp CCHH--HHHTCSEEEEEESSSGGGCSEEEEEECHHHHHH
T ss_pred CCHH--HHHhCCEEEEEcCCcccCCCEEEEeechhhhhc
Confidence 9986 34669999999 8999999999998753
|
| >1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.07 E-value=6.1e-13 Score=129.30 Aligned_cols=48 Identities=17% Similarity=0.290 Sum_probs=35.3
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
+|+++|+++.|. ..++++ +.+++|+.++|+|+||||||||++.|+|..
T Consensus 3 ~l~~~~~~~~~~----------------~~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~ 50 (210)
T 1pui_A 3 NLNYQQTHFVMS----------------APDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQK 50 (210)
T ss_dssp --------CEEE----------------ESSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-
T ss_pred chhhhhhhheee----------------cCCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 489999999993 146888 889999999999999999999999999987
|
| >2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A | Back alignment and structure |
|---|
Probab=99.02 E-value=1.9e-10 Score=133.68 Aligned_cols=109 Identities=25% Similarity=0.402 Sum_probs=88.8
Q ss_pred CCCCHHHHHHHHHHhcCCCCCH----------HHHHHHHHHHHHHcCCccc-----cCCcCCccccC-------------
Q 006897 159 PLLTVKETLMFSANFRLKGMSH----------KEKEDRVESLMDELGLTHV-----AGSFVGDEENR------------- 210 (627)
Q Consensus 159 ~~lTV~e~l~~~~~~~~~~~~~----------~~~~~~v~~~l~~lgL~~~-----~~~~~gGe~qr------------- 210 (627)
..+||.|++.|...+. .+. ++..+++ +.|+.+||+.. ..+++|||+||
T Consensus 450 ~~ltV~e~~~f~e~l~---l~~~~~~i~~~~~~ei~~Rl-~~L~~vGL~~l~ldR~~~tLSGGEkQRV~LA~aL~~~~~~ 525 (972)
T 2r6f_A 450 TAMSVTEALAFFDGLE---LTEKEAQIARLILREIRDRL-GFLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTG 525 (972)
T ss_dssp HTSBHHHHHHHHHHCC---CCHHHHHHSHHHHHHHHHHH-HHHHHHTCTTSBSSSBGGGCCHHHHHHHHHHHHHTTCCCS
T ss_pred hhCCHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHHH-HHhhhCCCCccccCCccccCCHHHHHHHHHHHHHhhCCCC
Confidence 4689999999965543 233 3445566 45899999754 34667999999
Q ss_pred -------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheee------cCCeEEeeCCHHHHH
Q 006897 211 -------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLIL------SRGSVVHYGSLELLE 274 (627)
Q Consensus 211 -------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL------~~G~iv~~G~~~~~~ 274 (627)
||+|||+.....+++.|+++++ .|.|||+|+||++ + .+.||+|++| ++|++++.|+++++.
T Consensus 526 ~llILDEPTagLdp~~~~~L~~~L~~Lr~-~G~TVIvVeHdl~-~-i~~ADrIi~LgpgaG~~gG~iv~~G~~~e~~ 599 (972)
T 2r6f_A 526 VLYVLDEPSIGLHQRDNDRLIATLKSMRD-LGNTLIVVEHDED-T-MLAADYLIDIGPGAGIHGGEVVAAGTPEEVM 599 (972)
T ss_dssp CEEEEECTTTTCCGGGHHHHHHHHHHHHT-TTCEEEEECCCHH-H-HHSCSEEEEECSSSGGGCCSEEEEECTTTTT
T ss_pred CEEEEeCcccCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCHH-H-HHhCCEEEEeCCCccCCCCEEEEecCHHHHH
Confidence 9999999999999999999964 6999999999997 3 4689999999 789999999998764
|
| >1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A | Back alignment and structure |
|---|
Probab=99.01 E-value=1.7e-10 Score=117.80 Aligned_cols=133 Identities=16% Similarity=0.143 Sum_probs=85.4
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCccCCChhhhcccEEEEccCCCCCCCCCHHHHHHHHHH
Q 006897 93 EARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSAN 172 (627)
Q Consensus 93 ~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~~~~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~ 172 (627)
.+++|++++|+||||||||||++.+++.+.. |.+ +.|.+.. -...+.|+..+.... .+.+.+. .
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~~-----g~~-~~g~~~~----~~~~v~~~~~e~~~~---~~~~r~~---~ 89 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIAG-----GPD-LLEVGEL----PTGPVIYLPAEDPPT---AIHHRLH---A 89 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHHT-----CCC-TTCCCCC----CCCCEEEEESSSCHH---HHHHHHH---H
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHhc-----CCC-cCCCccC----CCccEEEEECCCCHH---HHHHHHH---H
Confidence 4889999999999999999999999986542 544 2344321 134578877654320 1212221 1
Q ss_pred hcCCCCCHHHHHHHHHHHHHHcCCccccC----CcCCccccC---------------CCC--CCCHHH---HHHHHHHHH
Q 006897 173 FRLKGMSHKEKEDRVESLMDELGLTHVAG----SFVGDEENR---------------GIS--GLDSTS---ALQVIELLA 228 (627)
Q Consensus 173 ~~~~~~~~~~~~~~v~~~l~~lgL~~~~~----~~~gGe~qr---------------Pts--gLD~~~---~~~i~~~L~ 228 (627)
+.. ... ..+.+++++.+++.+..+ .+++|+.++ |++ ++|+.. ..++++.|+
T Consensus 90 ~g~-~~~----~~~~~~~~~~l~l~~~~~~~~~~ls~g~~~~i~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L~ 164 (279)
T 1nlf_A 90 LGA-HLS----AEERQAVADGLLIQPLIGSLPNIMAPEWFDGLKRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRME 164 (279)
T ss_dssp HHT-TSC----HHHHHHHHHHEEECCCTTSCCCTTSHHHHHHHHHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHH
T ss_pred HHh-hcC----hhhhhhccCceEEeecCCCCcccCCHHHHHHHHHhcCCCCEEEECCHHHhcCCCcCchHHHHHHHHHHH
Confidence 111 111 133566778887765543 233555544 777 889744 488899999
Q ss_pred HHHHcCCCEEEEEccCcc
Q 006897 229 SMAKAKQRTVVLSIHQPS 246 (627)
Q Consensus 229 ~l~~~~g~Tii~~tH~~~ 246 (627)
+++++.|+|||+++|+..
T Consensus 165 ~l~~~~g~tvi~i~H~~~ 182 (279)
T 1nlf_A 165 AIAADTGCSIVFLHHASK 182 (279)
T ss_dssp HHHHHHCCEEEEEEEC--
T ss_pred HHHHHcCCEEEEEecCCC
Confidence 998777999999999876
|
| >2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A* | Back alignment and structure |
|---|
Probab=99.01 E-value=3.7e-11 Score=128.02 Aligned_cols=132 Identities=16% Similarity=0.168 Sum_probs=83.9
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCccCCChhhhcccEEEEccCCCCCCCCCHHH
Q 006897 86 ILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKKPAQLRKICGFVAQEDNLLPLLTVKE 165 (627)
Q Consensus 86 iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~~~~~~~~r~~ig~v~Q~~~l~~~lTV~e 165 (627)
+|++++ +++|++++|+||||||||||+++|+|+++|.. .|.|.+.+.++. ...+..+++|+|...-....+...
T Consensus 127 ~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~--~g~I~~~e~~~e--~~~~~~~~~v~Q~~~g~~~~~~~~ 200 (372)
T 2ewv_A 127 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTK--SYHIITIEDPIE--YVFKHKKSIVNQREVGEDTKSFAD 200 (372)
T ss_dssp SHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHS--CCEEEEEESSCC--SCCCCSSSEEEEEEBTTTBSCSHH
T ss_pred HHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCC--CcEEEEecccHh--hhhccCceEEEeeecCCCHHHHHH
Confidence 577776 79999999999999999999999999988741 399977776532 235667899999421000001111
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccCCcCCccccCCCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCc
Q 006897 166 TLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAGSFVGDEENRGISGLDSTSALQVIELLASMAKAKQRTVVLSIHQP 245 (627)
Q Consensus 166 ~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~gGe~qrPtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~ 245 (627)
.|. .. +-. -.+.++-|| |+ |+.+.. ..++. +. .|.+++.++|+.
T Consensus 201 ~l~--------------------~~---L~~--~pd~illdE---~~---d~e~~~---~~l~~-~~-~g~~vi~t~H~~ 244 (372)
T 2ewv_A 201 ALR--------------------AA---LRE--DPDVIFVGE---MR---DLETVE---TALRA-AE-TGHLVFGTLHTN 244 (372)
T ss_dssp HHH--------------------HH---TTS--CCSEEEESC---CC---SHHHHH---HHHHH-HT-TTCEEEECCCCC
T ss_pred HHH--------------------HH---hhh--CcCEEEECC---CC---CHHHHH---HHHHH-Hh-cCCEEEEEECcc
Confidence 111 11 111 112222344 44 665533 34443 33 588999999997
Q ss_pred cHHHHHHhhhheeecC
Q 006897 246 SYRILQYISKFLILSR 261 (627)
Q Consensus 246 ~~~i~~~~D~i~vL~~ 261 (627)
+ +.+.+||++.|..
T Consensus 245 ~--~~~~~~rl~~l~~ 258 (372)
T 2ewv_A 245 T--AIDTIHRIVDIFP 258 (372)
T ss_dssp S--HHHHHHHHHHTSC
T ss_pred h--HHHHHHHHHHhcC
Confidence 6 6789999987753
|
| >1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=98.99 E-value=3e-11 Score=124.81 Aligned_cols=103 Identities=23% Similarity=0.316 Sum_probs=60.3
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEE---CCccCCChhhh-cccEEEEccCCCCCC----CCCH
Q 006897 92 FEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITV---NCHQIKKPAQL-RKICGFVAQEDNLLP----LLTV 163 (627)
Q Consensus 92 l~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i---~g~~~~~~~~~-r~~ig~v~Q~~~l~~----~lTV 163 (627)
+++.+|++++|+||||+|||||+|+|+|+.++.. |+|.+ +|+.......+ +..+||++|.+.+.+ .+|+
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~---G~I~~~~~~G~~tt~~~~~~~~~~g~v~dtpg~~~~~l~~lt~ 244 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELGLRT---NEISEHLGRGKHTTRHVELIHTSGGLVADTPGFSSLEFTDIEE 244 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC----------------------CCCCCEEEETTEEEESSCSCSSCCCTTCCH
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhcccccccc---cceeeecCCCcccccHHHHhhcCCEEEecCCCccccccccCCH
Confidence 5667999999999999999999999999988753 99998 77765332222 223799999987654 6799
Q ss_pred HHHHH--HHH-H-----hcCCC-CCHHHHHHHHHHHHHHcCCcc
Q 006897 164 KETLM--FSA-N-----FRLKG-MSHKEKEDRVESLMDELGLTH 198 (627)
Q Consensus 164 ~e~l~--~~~-~-----~~~~~-~~~~~~~~~v~~~l~~lgL~~ 198 (627)
|++. |.. . ++..+ ....+...+++++++.++|.+
T Consensus 245 -e~l~~~f~~~~~~~~~C~f~~c~h~~e~~~~v~~aLe~~~L~~ 287 (307)
T 1t9h_A 245 -EELGYTFPDIREKSSSCKFRGCLHLKEPKCAVKQAVEDGELKQ 287 (307)
T ss_dssp -HHHGGGSHHHHHHGGGCSSTTCCSSSCSSCHHHHHHHHTSSCH
T ss_pred -HHHHHHHHHHHHHhhhccccCCCCccCHHHHHHHHHHhCCChH
Confidence 8883 331 0 11111 112233456888999998864
|
| >2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=2.4e-12 Score=135.37 Aligned_cols=87 Identities=11% Similarity=0.103 Sum_probs=71.2
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
+|+++|+++.|. .+.+|+++|+++++|++++|+||||||||||+++|+|+++|.+ |+|.+.|
T Consensus 29 ~ie~~~~~~~~~---------------~~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~---g~v~i~~ 90 (337)
T 2qm8_A 29 LAESRRADHRAA---------------VRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAG---HKVAVLA 90 (337)
T ss_dssp HHTCSSHHHHHH---------------HHHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTT---CCEEEEE
T ss_pred HHeeCCcccccC---------------hHHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCC---CEEEEEE
Confidence 467888887772 3468999999999999999999999999999999999998754 9999998
Q ss_pred ccCCCh------hhhcccEEEEccCCCCCCC
Q 006897 136 HQIKKP------AQLRKICGFVAQEDNLLPL 160 (627)
Q Consensus 136 ~~~~~~------~~~r~~ig~v~Q~~~l~~~ 160 (627)
.++... ...++.+++++|++.+++.
T Consensus 91 ~d~~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 121 (337)
T 2qm8_A 91 VDPSSTRTGGSILGDKTRMARLAIDRNAFIR 121 (337)
T ss_dssp ECGGGGSSCCCSSCCGGGSTTGGGCTTEEEE
T ss_pred EcCcccccccchHHHhhhheeeccCcccccc
Confidence 775221 1346679999999877653
|
| >3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A* | Back alignment and structure |
|---|
Probab=98.96 E-value=1.3e-10 Score=124.64 Aligned_cols=157 Identities=13% Similarity=0.155 Sum_probs=91.0
Q ss_pred eeece-EEEEeCCeEEEEECCCCCcHHHHHHHH--HcCCCCCC--CccceEEECCccCCChh---hhcccEEEEccCCCC
Q 006897 86 ILKSV-SFEARDSEILAVVGPSGTGKSSLLRII--SGRVRDQD--FDPRSITVNCHQIKKPA---QLRKICGFVAQEDNL 157 (627)
Q Consensus 86 iL~~v-sl~i~~Ge~~aIiGpnGsGKSTLl~~L--~Gl~~~~~--~~~G~i~i~g~~~~~~~---~~r~~ig~v~Q~~~l 157 (627)
-||.+ ..-+++|++++|+||||||||||++.| .+..+++. ...+.+++++++..... .+++.+|+.+|
T Consensus 166 ~LD~lLgGGI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~---- 241 (400)
T 3lda_A 166 NLDTLLGGGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPD---- 241 (400)
T ss_dssp HHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHH----
T ss_pred hHHHHhcCCcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChH----
Confidence 34443 367999999999999999999999944 56665421 12257888887632322 23345666554
Q ss_pred CCCCCHHHHHHHHHHhcCCCCCHHH---HHHHHHHHHHHcCCccc-cCCcCCccccCCCCCCCH------------HHHH
Q 006897 158 LPLLTVKETLMFSANFRLKGMSHKE---KEDRVESLMDELGLTHV-AGSFVGDEENRGISGLDS------------TSAL 221 (627)
Q Consensus 158 ~~~lTV~e~l~~~~~~~~~~~~~~~---~~~~v~~~l~~lgL~~~-~~~~~gGe~qrPtsgLD~------------~~~~ 221 (627)
++.||+.+.. ...... ..+++.+.+...+.+-+ .|. |++.+|+ ....
T Consensus 242 ----~vleni~~~~-----~~~~~~~~~~l~~~~~~l~~~~~~llVIDs--------~t~~~~~~~sg~g~l~~Rq~~l~ 304 (400)
T 3lda_A 242 ----DALNNVAYAR-----AYNADHQLRLLDAAAQMMSESRFSLIVVDS--------VMALYRTDFSGRGELSARQMHLA 304 (400)
T ss_dssp ----HHHHTEEEEE-----CCSHHHHHHHHHHHHHHHHHSCEEEEEEET--------GGGGCC------CCHHHHHHHHH
T ss_pred ----hHhhcEEEec-----cCChHHHHHHHHHHHHHHHhcCCceEEecc--------hhhhCchhhcCccchHHHHHHHH
Confidence 4555544321 011122 12233344443332110 111 1122221 1126
Q ss_pred HHHHHHHHHHHcCCCEEEEEccCcc------------------HHHHHHhhhheeecCCe
Q 006897 222 QVIELLASMAKAKQRTVVLSIHQPS------------------YRILQYISKFLILSRGS 263 (627)
Q Consensus 222 ~i~~~L~~l~~~~g~Tii~~tH~~~------------------~~i~~~~D~i~vL~~G~ 263 (627)
++++.|++++++.|.|||+++|... ..+.+.+|.++.|++++
T Consensus 305 ~il~~L~~lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~~~ad~vl~L~~~~ 364 (400)
T 3lda_A 305 KFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMAYSSTTRLGFKKGK 364 (400)
T ss_dssp HHHHHHHHHHHHHCCEEEEEEEC--------------------CHHHHHCSEEEEEEECS
T ss_pred HHHHHHHHHHHHcCCEEEEEEeecccCCccccccCCCccCCchhHHHHhcceEEEEEecC
Confidence 7889999999888999999999821 12466778888887653
|
| >3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A* | Back alignment and structure |
|---|
Probab=98.95 E-value=3.2e-10 Score=123.75 Aligned_cols=51 Identities=12% Similarity=0.128 Sum_probs=47.5
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCccCC
Q 006897 85 HILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIK 139 (627)
Q Consensus 85 ~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~~~ 139 (627)
.+|+|+||++++ |+++|+|||||||||||++|+|+++|+. |+|.++|+++.
T Consensus 18 ~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~---G~I~~~g~~~~ 68 (483)
T 3euj_A 18 NGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDL---TLLNFRNTTEA 68 (483)
T ss_dssp TTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCT---TTCCCCCTTSC
T ss_pred ccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCC---CEEEECCEEcc
Confidence 479999999999 9999999999999999999999999864 99999998863
|
| >1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A* | Back alignment and structure |
|---|
Probab=98.94 E-value=8.5e-12 Score=134.56 Aligned_cols=121 Identities=18% Similarity=0.252 Sum_probs=80.5
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCccCCC------hhhhcccEEEEc-----
Q 006897 84 LHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKK------PAQLRKICGFVA----- 152 (627)
Q Consensus 84 ~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~~~~------~~~~r~~ig~v~----- 152 (627)
..+|+++ +. ++|++++|+|||||||||||++|+|++++.. |+|.+.+.++.. ...+++.+|+.+
T Consensus 156 ~~~L~~l-~~-~~ggii~I~GpnGSGKTTlL~allg~l~~~~---g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~lr 230 (418)
T 1p9r_A 156 HDNFRRL-IK-RPHGIILVTGPTGSGKSTTLYAGLQELNSSE---RNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLR 230 (418)
T ss_dssp HHHHHHH-HT-SSSEEEEEECSTTSCHHHHHHHHHHHHCCTT---SCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHHH
T ss_pred HHHHHHH-HH-hcCCeEEEECCCCCCHHHHHHHHHhhcCCCC---CEEEEecccchhccCCcceEEEccccCcCHHHHHH
Confidence 3478888 53 8999999999999999999999999998753 999998877521 112344566655
Q ss_pred ----cCCCC--CCC----CCHHHHHHHHHHhcC--CCCCHHHHHHHHHHHHHHcCCccc--cCCcCCccccC
Q 006897 153 ----QEDNL--LPL----LTVKETLMFSANFRL--KGMSHKEKEDRVESLMDELGLTHV--AGSFVGDEENR 210 (627)
Q Consensus 153 ----Q~~~l--~~~----lTV~e~l~~~~~~~~--~~~~~~~~~~~v~~~l~~lgL~~~--~~~~~gGe~qr 210 (627)
|++.. +.. .|+.+++.++..-+. .........+ +.+.|..+|+++. ...++||++||
T Consensus 231 ~~Lrq~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~~~~-~i~rL~~lgl~~~~~~~~LSgg~~QR 301 (418)
T 1p9r_A 231 AILRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAVG-AVTRLRDMGIEPFLISSSLLGVLAQR 301 (418)
T ss_dssp HHGGGCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSSHH-HHHHHHHHTCCHHHHHHHEEEEEEEE
T ss_pred HHhccCCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhhHHH-HHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 88765 333 589999887642110 0001111122 3335677888653 34566999998
|
| >1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1 | Back alignment and structure |
|---|
Probab=98.93 E-value=7e-13 Score=138.44 Aligned_cols=144 Identities=16% Similarity=0.141 Sum_probs=87.8
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC--------CCCCCccceEEECCccCCCh-----------------hhhcccEEEE-
Q 006897 98 EILAVVGPSGTGKSSLLRIISGRV--------RDQDFDPRSITVNCHQIKKP-----------------AQLRKICGFV- 151 (627)
Q Consensus 98 e~~aIiGpnGsGKSTLl~~L~Gl~--------~~~~~~~G~i~i~g~~~~~~-----------------~~~r~~ig~v- 151 (627)
++++|+|+||||||||+|.|.|.. .++ .|+|.++|.++... .++++.++++
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d---~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~ 81 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENE---FGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLL 81 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSS---CCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEec---CcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHH
Confidence 689999999999999999999986 343 49999999875321 2345667877
Q ss_pred --ccCCCCCCCCCHHHHHHHHH--Hh--cCCCCCHHHHHHHHHHHHHHcCCccccC---CcCCccccCCC------CCCC
Q 006897 152 --AQEDNLLPLLTVKETLMFSA--NF--RLKGMSHKEKEDRVESLMDELGLTHVAG---SFVGDEENRGI------SGLD 216 (627)
Q Consensus 152 --~Q~~~l~~~lTV~e~l~~~~--~~--~~~~~~~~~~~~~v~~~l~~lgL~~~~~---~~~gGe~qrPt------sgLD 216 (627)
+|+..+++..++.||..++. .+ .....+......+++.++..+++.+..+ .+++|++||-. +..|
T Consensus 82 ~~~q~~~~~~~~~v~E~~~l~~p~~~~~~~~~~~~~~~~~~l~~~l~~vd~~~~~~~~~~ls~g~~Q~~~ad~ill~k~d 161 (318)
T 1nij_A 82 DNLDKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGYADRILLTKTD 161 (318)
T ss_dssp HHHHHTSCCCSEEEEEEETTCCHHHHHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHHHHCHHHHHHHHTCSEEEEECTT
T ss_pred hHHhcCCCCCCEEEEeCCCCCCHHHHHHHHhcCccccCeEEECCEEEEEEHHHHHHHHhhchHHHHHHHhCCEEEEECcc
Confidence 68776666778888776431 00 0000000000111222233334433222 23578888811 2223
Q ss_pred HHHH-HHHHHHHHHHHHcCCCEEEEEccCcc
Q 006897 217 STSA-LQVIELLASMAKAKQRTVVLSIHQPS 246 (627)
Q Consensus 217 ~~~~-~~i~~~L~~l~~~~g~Tii~~tH~~~ 246 (627)
.... .++.+.|++++ .+.||++++|++.
T Consensus 162 l~de~~~l~~~l~~l~--~~~~ii~~sh~~~ 190 (318)
T 1nij_A 162 VAGEAEKLHERLARIN--ARAPVYTVTHGDI 190 (318)
T ss_dssp TCSCTHHHHHHHHHHC--SSSCEEECCSSCC
T ss_pred cCCHHHHHHHHHHHhC--CCCeEEEecccCC
Confidence 2222 78888998874 4789999999765
|
| >2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A | Back alignment and structure |
|---|
Probab=98.92 E-value=2.2e-11 Score=122.01 Aligned_cols=71 Identities=14% Similarity=0.215 Sum_probs=55.1
Q ss_pred CCeEEEEECCCCCcHHHHHHHHH---cCCCCCCCccceEEECCccCCChhhhcccEEEEccCCCCCCCCCHHHHHHHHH
Q 006897 96 DSEILAVVGPSGTGKSSLLRIIS---GRVRDQDFDPRSITVNCHQIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSA 171 (627)
Q Consensus 96 ~Ge~~aIiGpnGsGKSTLl~~L~---Gl~~~~~~~~G~i~i~g~~~~~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~ 171 (627)
++++++|+||||||||||+++|+ |+..++ .|++.++|.+.. ......+++++|+..+++..++.+++....
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~---~G~i~~~~~~~~--~~~~~~i~~~~~~~~~~~~~~v~~~l~~~l 99 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLS---SGHFLRENIKAS--TEVGEMAKQYIEKSLLVPDHVITRLMMSEL 99 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEE---HHHHHHHHHHTT--CHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEec---HHHHHHHHHhcC--ChHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 47999999999999999999999 998774 388877765421 223344566778877888889999998754
|
| >2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* | Back alignment and structure |
|---|
Probab=98.91 E-value=2.6e-10 Score=132.26 Aligned_cols=158 Identities=12% Similarity=0.147 Sum_probs=106.3
Q ss_pred CCCCcHHHHHHHHHcCCCCC------CCccceEEECCccCCCh--hhhcccEEEEccC---CCCCC----CCCH-HHHHH
Q 006897 105 PSGTGKSSLLRIISGRVRDQ------DFDPRSITVNCHQIKKP--AQLRKICGFVAQE---DNLLP----LLTV-KETLM 168 (627)
Q Consensus 105 pnGsGKSTLl~~L~Gl~~~~------~~~~G~i~i~g~~~~~~--~~~r~~ig~v~Q~---~~l~~----~lTV-~e~l~ 168 (627)
.+..||++|.+.+....-|. ....|+|.++|+++.+. ..+.+.++++.|. ..... .++- ...+.
T Consensus 270 ~~~~~~~~~~~~~~~~~Cp~C~G~Rl~~~~~~v~~~G~~I~~~~~~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 349 (842)
T 2vf7_A 270 ESASMKKRVQGYMISEECPLCHGKRLRQEALNVTFAGLDITELSRLPLARVSELLRPYAEEREPGHAERVKNRPEQAIAL 349 (842)
T ss_dssp CCHHHHHHHGGGCEEEECSSSSSSCBCTTTTTCBBTTBCHHHHHHSBHHHHHHHHHHHHTTCSSCSTTSSSSCSSHHHHH
T ss_pred cCHHHHHHHHhhccccCCCCCCCCccCHHHhhcccCCccHHHHhhcCHHHHHHHHHhhhhhhhhcccchhhcchhhHHHH
Confidence 35568999999986532221 01248899999886321 1122223333332 11000 0111 11122
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHHHcCCccc-----cCCcCCccccC--------------------CCCCCCHHHHHHH
Q 006897 169 FSANFRLKGMSHKEKEDRVESLMDELGLTHV-----AGSFVGDEENR--------------------GISGLDSTSALQV 223 (627)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-----~~~~~gGe~qr--------------------PtsgLD~~~~~~i 223 (627)
+. + .++..++++ .|+.+||+.. ..+++|||+|| ||+|||+.....+
T Consensus 350 ~~--i------~~ei~~rl~-~L~~vGL~~l~l~r~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L 420 (842)
T 2vf7_A 350 QR--M------AADLVKRLD-VLLHLGLGYLGLDRSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEAL 420 (842)
T ss_dssp HH--H------HHHHHHHHH-HHHHTTCTTSBTTCBGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHH
T ss_pred HH--H------HHHHHHHHH-HHHhCCCCcCCccCCcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHH
Confidence 11 1 245667776 6889999754 34567999998 9999999999999
Q ss_pred HHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheee------cCCeEEeeCCHHHHH
Q 006897 224 IELLASMAKAKQRTVVLSIHQPSYRILQYISKFLIL------SRGSVVHYGSLELLE 274 (627)
Q Consensus 224 ~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL------~~G~iv~~G~~~~~~ 274 (627)
+++|+++++ .|.|||+|+||++ +.+.||+|++| ++|++++.|+++++.
T Consensus 421 ~~~l~~L~~-~G~TVIvVeHdl~--~l~~aD~ii~lgpgaG~~~G~iv~~g~~~~~~ 474 (842)
T 2vf7_A 421 LSALENLKR-GGNSLFVVEHDLD--VIRRADWLVDVGPEAGEKGGEILYSGPPEGLK 474 (842)
T ss_dssp HHHHHHHHT-TTCEEEEECCCHH--HHTTCSEEEEECSSSGGGCCSEEEEECGGGGG
T ss_pred HHHHHHHHH-cCCEEEEEcCCHH--HHHhCCEEEEeCCCcccCCCEEEEecCHHHHH
Confidence 999999965 6999999999997 45689999999 799999999988764
|
| >1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A* | Back alignment and structure |
|---|
Probab=98.91 E-value=9e-12 Score=130.87 Aligned_cols=164 Identities=16% Similarity=0.182 Sum_probs=102.2
Q ss_pred cceeeceEEEEeCC-------eEEEEECCCCCcHHHHHHHHHcCCCCC-CCccceEEECCccCCC-hhhh-cccEEEEcc
Q 006897 84 LHILKSVSFEARDS-------EILAVVGPSGTGKSSLLRIISGRVRDQ-DFDPRSITVNCHQIKK-PAQL-RKICGFVAQ 153 (627)
Q Consensus 84 ~~iL~~vsl~i~~G-------e~~aIiGpnGsGKSTLl~~L~Gl~~~~-~~~~G~i~i~g~~~~~-~~~~-r~~ig~v~Q 153 (627)
..+++++++.+++| +.++|.||||+|||||+++|+|.+... ....|.+..++.++.. .... ++.|.+++|
T Consensus 31 ~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~~~~~~~~v~~iDE 110 (334)
T 1in4_A 31 ENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFIDE 110 (334)
T ss_dssp HHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHHHHCCTTCEEEEET
T ss_pred HHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHHHHccCCCEEEEcc
Confidence 45899999999887 899999999999999999999987321 0122555444443211 0112 457999999
Q ss_pred CCCCCCCCCHHHHHHHHHHhcCCCC--CHHHHHHHHHHHHHHcCCcc---ccCCcCCccccCC--CCCCCHHHHHHHHHH
Q 006897 154 EDNLLPLLTVKETLMFSANFRLKGM--SHKEKEDRVESLMDELGLTH---VAGSFVGDEENRG--ISGLDSTSALQVIEL 226 (627)
Q Consensus 154 ~~~l~~~lTV~e~l~~~~~~~~~~~--~~~~~~~~v~~~l~~lgL~~---~~~~~~gGe~qrP--tsgLD~~~~~~i~~~ 226 (627)
.+.+.+ ++.|++........... ......+.+...++.++|.. ..+.+++|+++|- ..+||+.+..++.++
T Consensus 111 ~~~l~~--~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~at~~~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~i 188 (334)
T 1in4_A 111 IHRLNK--AVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATTRSGLLSSPLRSRFGIILELDFYTVKELKEI 188 (334)
T ss_dssp GGGCCH--HHHHHHHHHHHTSCCCC---------------CCCEEEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHH
T ss_pred hhhcCH--HHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEEecCCcccCCHHHHHhcCceeeCCCCCHHHHHHH
Confidence 877765 78888854432211000 01222344555555555532 2345568899983 478999999999999
Q ss_pred HHHHHHcCCCEEEEEccCccHHHHHHhhh
Q 006897 227 LASMAKAKQRTVVLSIHQPSYRILQYISK 255 (627)
Q Consensus 227 L~~l~~~~g~Tii~~tH~~~~~i~~~~D~ 255 (627)
|++.++..+ ++|+.+ .+..++++
T Consensus 189 L~~~~~~~~-----~~~~~~-~~~~ia~~ 211 (334)
T 1in4_A 189 IKRAASLMD-----VEIEDA-AAEMIAKR 211 (334)
T ss_dssp HHHHHHHTT-----CCBCHH-HHHHHHHT
T ss_pred HHHHHHHcC-----CCcCHH-HHHHHHHh
Confidence 999887655 367765 35556654
|
| >3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=98.88 E-value=9.5e-11 Score=113.43 Aligned_cols=70 Identities=14% Similarity=0.296 Sum_probs=47.8
Q ss_pred EEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCccCCC--hhhhcccEEEEccCCCCCCCCCHHHHH
Q 006897 91 SFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKK--PAQLRKICGFVAQEDNLLPLLTVKETL 167 (627)
Q Consensus 91 sl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~~~~--~~~~r~~ig~v~Q~~~l~~~lTV~e~l 167 (627)
|+++++|++++|+||||||||||+++|+|+.+ .+.+.+..... ....+..++|++|++..++.+++.+++
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA-------EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAF 72 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS-------SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCE
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC-------CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcE
Confidence 57788999999999999999999999999863 24455544321 122356789999987666655555444
|
| >2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* | Back alignment and structure |
|---|
Probab=98.87 E-value=1.5e-09 Score=105.96 Aligned_cols=157 Identities=18% Similarity=0.117 Sum_probs=86.9
Q ss_pred ceeeceEE-EEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCccCCChhhhcccEEEEccCCCCCCCCCH
Q 006897 85 HILKSVSF-EARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKKPAQLRKICGFVAQEDNLLPLLTV 163 (627)
Q Consensus 85 ~iL~~vsl-~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~~~~~~~~r~~ig~v~Q~~~l~~~lTV 163 (627)
+.||++.. .+++|++++|+||||||||||++.|++ .+. .+.+.++..+-.....+++. .+.. .+..
T Consensus 7 ~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~~~---~~v~~i~~~~~~~~~~~~~~----~~~~----~~~~ 73 (220)
T 2cvh_A 7 KSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--LSG---KKVAYVDTEGGFSPERLVQM----AETR----GLNP 73 (220)
T ss_dssp HHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--HHC---SEEEEEESSCCCCHHHHHHH----HHTT----TCCH
T ss_pred HHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--HcC---CcEEEEECCCCCCHHHHHHH----HHhc----CCCh
Confidence 46788774 899999999999999999999999999 322 25556655431122222211 1111 1111
Q ss_pred HHHHHHHHHhcCCCC-CHHHHHHHHHHHHHHcCCccccCCcCCccccCCCCCCCHH--------HHHHHHHHHHHHHHcC
Q 006897 164 KETLMFSANFRLKGM-SHKEKEDRVESLMDELGLTHVAGSFVGDEENRGISGLDST--------SALQVIELLASMAKAK 234 (627)
Q Consensus 164 ~e~l~~~~~~~~~~~-~~~~~~~~v~~~l~~lgL~~~~~~~~gGe~qrPtsgLD~~--------~~~~i~~~L~~l~~~~ 234 (627)
.+.+. .+..... ...+..+.+..+...+. +-.+-.+=.+ |++.+|+. ...++++.|++++++.
T Consensus 74 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~lliiD~---~~~~l~~~~~~~~~~~~~~~~~~~L~~l~~~~ 145 (220)
T 2cvh_A 74 EEALS---RFILFTPSDFKEQRRVIGSLKKTVD--SNFALVVVDS---ITAHYRAEENRSGLIAELSRQLQVLLWIARKH 145 (220)
T ss_dssp HHHHH---HEEEECCTTTSHHHHHHHHHHHHCC--TTEEEEEEEC---CCCCTTGGGGSSTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHhh---cEEEEecCCHHHHHHHHHHHHHHhh--cCCCEEEEcC---cHHHhhhcCchHHHHHHHHHHHHHHHHHHHHc
Confidence 11110 1111111 11122222332222221 0000011111 66777753 3355777788888877
Q ss_pred CCEEEEEccCccH------------HHHHHhhhheeecCC
Q 006897 235 QRTVVLSIHQPSY------------RILQYISKFLILSRG 262 (627)
Q Consensus 235 g~Tii~~tH~~~~------------~i~~~~D~i~vL~~G 262 (627)
|.|||+++|.... .+.+.||++++|++.
T Consensus 146 ~~~vi~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 146 NIPVIVINQVHFDSRTEMTKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp TCCEEEEECSSSSCTTSSCCSCCCHHHHHTSSEEEEEEEC
T ss_pred CCEEEEEeeEEEcCCCCccccCCCcceeecCcEEEEEEEe
Confidence 9999999997651 367889999999764
|
| >1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=98.78 E-value=8.9e-11 Score=125.31 Aligned_cols=163 Identities=17% Similarity=0.154 Sum_probs=102.9
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHHcCCC----C-----CCCccceEEECCccCCChh---hhcccE---EEEccCCCC
Q 006897 93 EARDSEILAVVGPSGTGKSSLLRIISGRVR----D-----QDFDPRSITVNCHQIKKPA---QLRKIC---GFVAQEDNL 157 (627)
Q Consensus 93 ~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~----~-----~~~~~G~i~i~g~~~~~~~---~~r~~i---g~v~Q~~~l 157 (627)
.+++|+.++|+|+||||||||+|+|+|... + .....|.+.++|..+.... .-++.+ .++.+.+.+
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl 95 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGL 95 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccc
Confidence 457899999999999999999999999321 0 0123599999875421111 112223 467788888
Q ss_pred CCCCCHHHHH--HHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccC--CcCCccc--------cCCCCCCCHHHHHHHHH
Q 006897 158 LPLLTVKETL--MFSANFRLKGMSHKEKEDRVESLMDELGLTHVAG--SFVGDEE--------NRGISGLDSTSALQVIE 225 (627)
Q Consensus 158 ~~~lTV~e~l--~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~--~~~gGe~--------qrPtsgLD~~~~~~i~~ 225 (627)
.+..+..|++ .|...++. ++.++..++..+..+ ...|+.. ..|+.++|+....+.++
T Consensus 96 ~~~~s~~e~L~~~fl~~ir~-----------~d~il~Vvd~~~d~~i~~v~~~~dP~~di~ildeel~~~D~~~~~k~~~ 164 (392)
T 1ni3_A 96 TKGASTGVGLGNAFLSHVRA-----------VDAIYQVVRAFDDAEIIHVEGDVDPIRDLSIIVDELLIKDAEFVEKHLE 164 (392)
T ss_dssp CCCCCSSSSSCHHHHHHHTT-----------CSEEEEEEECCCTTCSSCCSSSSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHH-----------HHHHHHHHhccccceeeeeccccCcchhhhhchhhhHHHHHHHHHHHHH
Confidence 8877876665 44332221 111111111111000 0112111 11677888888888888
Q ss_pred HHHHH-HHcCCCEEEEEccCccHHHHHHhhhhe-eecCC-eEEeeCCH
Q 006897 226 LLASM-AKAKQRTVVLSIHQPSYRILQYISKFL-ILSRG-SVVHYGSL 270 (627)
Q Consensus 226 ~L~~l-~~~~g~Tii~~tH~~~~~i~~~~D~i~-vL~~G-~iv~~G~~ 270 (627)
.++++ .+ .|.|++ +|+.. ++.++||++. +|++| ++++.|+.
T Consensus 165 ~l~~~~~~-~g~ti~--sh~~~-~~~~l~~~i~~~L~~G~~~~~~~~~ 208 (392)
T 1ni3_A 165 GLRKITSR-GANTLE--MKAKK-EEQAIIEKVYQYLTETKQPIRKGDW 208 (392)
T ss_dssp HHHHTTCC-SSCSSS--HHHHH-HHHHHHHHHHHHHHTTCSCGGGSCC
T ss_pred HHHHHHHh-cCCccc--cccHH-HHHHHHHHHHHHhccCCceeecCCC
Confidence 88887 54 477764 99988 5899999999 99999 98887764
|
| >1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=98.78 E-value=2.9e-10 Score=112.55 Aligned_cols=60 Identities=12% Similarity=0.185 Sum_probs=42.3
Q ss_pred EEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCccCCC----------hhhhcccEEEEccC
Q 006897 91 SFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKK----------PAQLRKICGFVAQE 154 (627)
Q Consensus 91 sl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~~~~----------~~~~r~~ig~v~Q~ 154 (627)
++++++ ++++|+|||||||||||++|+|++.|+. |+|.++|.++.. ....++.++||+|+
T Consensus 22 ~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~~---G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~~~ 91 (227)
T 1qhl_A 22 TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPDL---TLLHFRNTTEAGATSGSRDKGLHGKLKAGVCYSMLD 91 (227)
T ss_dssp EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCCT---TTC------------------CGGGBCSSEEEEEEE
T ss_pred EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccCC---CeEEECCEEcccCCccccccchhhHhhcCcEEEEEe
Confidence 466666 8999999999999999999999999864 999999987521 11245679999985
|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
Probab=98.72 E-value=3.2e-09 Score=100.74 Aligned_cols=113 Identities=12% Similarity=0.159 Sum_probs=66.2
Q ss_pred EEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCccCCChhhhcccEEEEccCCCCCCCCCHHHHHHHH
Q 006897 91 SFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFS 170 (627)
Q Consensus 91 sl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~~~~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~ 170 (627)
++++++|+.++|.||||+|||||+++|++.+.+.. |. . +.| +++.+.+...
T Consensus 32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~---g~------~----------~~~----------~~~~~~~~~~ 82 (180)
T 3ec2_A 32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKK---GI------R----------GYF----------FDTKDLIFRL 82 (180)
T ss_dssp SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHS---CC------C----------CCE----------EEHHHHHHHH
T ss_pred hccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHc---CC------e----------EEE----------EEHHHHHHHH
Confidence 45677899999999999999999999999875422 21 0 001 1233333221
Q ss_pred HHhcCCCCCHHHHHHHHHHHHHHcCCccccCCcCCccccCCC-CCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccH
Q 006897 171 ANFRLKGMSHKEKEDRVESLMDELGLTHVAGSFVGDEENRGI-SGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSY 247 (627)
Q Consensus 171 ~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~gGe~qrPt-sgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~ 247 (627)
......+.. . +.++.+.= .+-++-.| |. .++|+..+..+.+++.+..+ .|+++|++||.+..
T Consensus 83 ~~~~~~~~~-~-------~~~~~~~~---~~llilDE---~~~~~~~~~~~~~l~~ll~~~~~-~~~~ii~tsn~~~~ 145 (180)
T 3ec2_A 83 KHLMDEGKD-T-------KFLKTVLN---SPVLVLDD---LGSERLSDWQRELISYIITYRYN-NLKSTIITTNYSLQ 145 (180)
T ss_dssp HHHHHHTCC-S-------HHHHHHHT---CSEEEEET---CSSSCCCHHHHHHHHHHHHHHHH-TTCEEEEECCCCSC
T ss_pred HHHhcCchH-H-------HHHHHhcC---CCEEEEeC---CCCCcCCHHHHHHHHHHHHHHHH-cCCCEEEEcCCChh
Confidence 100000000 0 11121110 01111111 44 48999999999999988764 58999999998753
|
| >1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=98.70 E-value=1.1e-08 Score=107.46 Aligned_cols=139 Identities=13% Similarity=0.096 Sum_probs=70.0
Q ss_pred EEEECCCCCcHHHHHHHHHc-CCCCCCCccceEEECCccCCChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCC
Q 006897 100 LAVVGPSGTGKSSLLRIISG-RVRDQDFDPRSITVNCHQIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGM 178 (627)
Q Consensus 100 ~aIiGpnGsGKSTLl~~L~G-l~~~~~~~~G~i~i~g~~~~~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~ 178 (627)
+.|.||||+|||||+++|+| +..+.. |.+.++|.+...+...+..+++++|.+.+.-..+ +. + ..
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l~~~~~---g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~---~------~~ 104 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESIFGPGV---YRLKIDVRQFVTASNRKLELNVVSSPYHLEITPS--DM---G------NN 104 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHSCTTC---CC------------------CCEECSSEEEECCC---------------C
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCCCC---CeEEecceeecccccccceeeeecccceEEecHh--hc---C------Cc
Confidence 89999999999999999999 666643 9999988775333333567889998765421111 00 0 00
Q ss_pred CHHHHHHHHHHHHHHcCCccccCCcCC--cccc-----CCCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHH
Q 006897 179 SHKEKEDRVESLMDELGLTHVAGSFVG--DEEN-----RGISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQ 251 (627)
Q Consensus 179 ~~~~~~~~v~~~l~~lgL~~~~~~~~g--Ge~q-----rPtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~ 251 (627)
.....++.++++.+..++.+.. .++| +..+ .|++ ||+.++..+.+.+.+.. .+.++|++||+++.....
T Consensus 105 ~~~~~~~~i~~~~~~~~~~~~~-~ls~l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~--~~~~~Il~t~~~~~l~~~ 180 (354)
T 1sxj_E 105 DRIVIQELLKEVAQMEQVDFQD-SKDGLAHRYKCVIINEANS-LTKDAQAALRRTMEKYS--KNIRLIMVCDSMSPIIAP 180 (354)
T ss_dssp CHHHHHHHHHHHTTTTC-------------CCEEEEEECTTS-SCHHHHHHHHHHHHHST--TTEEEEEEESCSCSSCHH
T ss_pred chHHHHHHHHHHHHhccccccc-cccccCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhc--CCCEEEEEeCCHHHHHHH
Confidence 1112223333333322332211 1112 1111 1666 99999999999998863 368999999998642233
Q ss_pred Hhhhh
Q 006897 252 YISKF 256 (627)
Q Consensus 252 ~~D~i 256 (627)
+.+|.
T Consensus 181 l~sR~ 185 (354)
T 1sxj_E 181 IKSQC 185 (354)
T ss_dssp HHTTS
T ss_pred HHhhc
Confidence 34444
|
| >2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.68 E-value=7.5e-10 Score=110.02 Aligned_cols=166 Identities=11% Similarity=0.101 Sum_probs=88.0
Q ss_pred ceeece-EEEEeCCeEEEEECCCCCcHHHHHHHH-HcCCCCCCCccceEEECCccCCChhhh---cccEEEEccCCCCCC
Q 006897 85 HILKSV-SFEARDSEILAVVGPSGTGKSSLLRII-SGRVRDQDFDPRSITVNCHQIKKPAQL---RKICGFVAQEDNLLP 159 (627)
Q Consensus 85 ~iL~~v-sl~i~~Ge~~aIiGpnGsGKSTLl~~L-~Gl~~~~~~~~G~i~i~g~~~~~~~~~---r~~ig~v~Q~~~l~~ 159 (627)
+.||++ ..-+++|++++|.||||||||||+..+ .+..+.. .+.+.+.+.. . ..++ .+.+|+.+|+.....
T Consensus 10 ~~LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~---~~v~~~~~e~-~-~~~~~~~~~~~g~~~~~~~~~~ 84 (247)
T 2dr3_A 10 PGVDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMG---EPGIYVALEE-H-PVQVRQNMAQFGWDVKPYEEKG 84 (247)
T ss_dssp TTHHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHHHHTT---CCEEEEESSS-C-HHHHHHHHHTTTCCCHHHHHHT
T ss_pred hhHHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcC---CeEEEEEccC-C-HHHHHHHHHHcCCCHHHHhhCC
Confidence 457777 778999999999999999999995544 4444332 1455555543 2 1111 123455444211000
Q ss_pred CCCHHHH--HHHH--HHhc---C-CCCCHHHHHHHHHHHHHHcCCcccc-CCcCCccccCCCCCCCHHHHHHHHHHHHHH
Q 006897 160 LLTVKET--LMFS--ANFR---L-KGMSHKEKEDRVESLMDELGLTHVA-GSFVGDEENRGISGLDSTSALQVIELLASM 230 (627)
Q Consensus 160 ~lTV~e~--l~~~--~~~~---~-~~~~~~~~~~~v~~~l~~lgL~~~~-~~~~gGe~qrPtsgLD~~~~~~i~~~L~~l 230 (627)
.+++.|. ..+. .... . ......+..+++.+.++..+.+-+. |.+... .+=|+....+.+..|.++
T Consensus 85 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~vviD~~~~l------~~~~~~~~~~~l~~l~~~ 158 (247)
T 2dr3_A 85 MFAMVDAFTAGIGKSKEYEKYIVHDLTDIREFIEVLRQAIRDINAKRVVVDSVTTL------YINKPAMARSIILQLKRV 158 (247)
T ss_dssp SEEEEECSTTTTCC--CCCSCBCSCCSSHHHHHHHHHHHHHHHTCCEEEEETSGGG------TTTCGGGHHHHHHHHHHH
T ss_pred cEEEEecchhhcccccccccccccCccCHHHHHHHHHHHHHHhCCCEEEECCchHh------hcCCHHHHHHHHHHHHHH
Confidence 1111110 0000 0000 0 0012233455666677666654221 221100 011444456666777777
Q ss_pred HHcCCCEEEEEccCccHH-------HHHHhhhheeecC
Q 006897 231 AKAKQRTVVLSIHQPSYR-------ILQYISKFLILSR 261 (627)
Q Consensus 231 ~~~~g~Tii~~tH~~~~~-------i~~~~D~i~vL~~ 261 (627)
+++.|.|||+++|..... +.+.||.++.|+.
T Consensus 159 ~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 159 LAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp HHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred HHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 777899999999976521 4678899999864
|
| >2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.68 E-value=2.4e-10 Score=116.62 Aligned_cols=79 Identities=16% Similarity=0.224 Sum_probs=62.5
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCccCCC--hhhhcccEEEEccCC-CCCCC
Q 006897 84 LHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKK--PAQLRKICGFVAQED-NLLPL 160 (627)
Q Consensus 84 ~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~~~~--~~~~r~~ig~v~Q~~-~l~~~ 160 (627)
..+++++++++++| ++|+||||||||||+|+|+|...+ |.+.++|.++.. ..+.++.+++++|+. ...|.
T Consensus 33 ~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~-----~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~ 105 (274)
T 2x8a_A 33 PDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL-----NFISVKGPELLNMYVGESERAVRQVFQRAKNSAPC 105 (274)
T ss_dssp HHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC-----EEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSE
T ss_pred HHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC-----CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCC
Confidence 45899999999999 999999999999999999998764 789999987643 123445678888874 45566
Q ss_pred CCHHHHHHH
Q 006897 161 LTVKETLMF 169 (627)
Q Consensus 161 lTV~e~l~~ 169 (627)
+++.|++..
T Consensus 106 i~~~Deid~ 114 (274)
T 2x8a_A 106 VIFFDEVDA 114 (274)
T ss_dssp EEEEETCTT
T ss_pred eEeeehhhh
Confidence 677777754
|
| >2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=98.63 E-value=2.1e-08 Score=92.57 Aligned_cols=44 Identities=20% Similarity=0.356 Sum_probs=35.9
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccc--eEEECCcc
Q 006897 85 HILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPR--SITVNCHQ 137 (627)
Q Consensus 85 ~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G--~i~i~g~~ 137 (627)
.+|+++ +|+.++|+||||+|||||+++|+|...+. | .+.+++.+
T Consensus 29 ~~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~~~----g~~~~~~~~~~ 74 (149)
T 2kjq_A 29 YVLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQALEA----GKNAAYIDAAS 74 (149)
T ss_dssp HHCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHHTT----TCCEEEEETTT
T ss_pred HHHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHHhc----CCcEEEEcHHH
Confidence 467777 89999999999999999999999988652 5 56665544
|
| >1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1 | Back alignment and structure |
|---|
Probab=98.62 E-value=3.2e-10 Score=122.05 Aligned_cols=35 Identities=26% Similarity=0.275 Sum_probs=33.2
Q ss_pred eeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 006897 87 LKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 87 L~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
-++++++++.|+.++|+|+|||||||||++|+|..
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~ 181 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAH 181 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSC
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCC
Confidence 48999999999999999999999999999999974
|
| >4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP} | Back alignment and structure |
|---|
Probab=98.62 E-value=2.4e-09 Score=103.62 Aligned_cols=75 Identities=13% Similarity=0.236 Sum_probs=46.0
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCccCCChhhh-cccEEEEccCCCCCCCCCHH
Q 006897 86 ILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKKPAQL-RKICGFVAQEDNLLPLLTVK 164 (627)
Q Consensus 86 iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~~~~~~~~-r~~ig~v~Q~~~l~~~lTV~ 164 (627)
+..+-.++.++|++++|+||||||||||+++|+|.+ |.+.+++.++...... +...|+++|+....+.+++.
T Consensus 18 ~~~~~~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~-------g~~~i~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 90 (200)
T 4eun_A 18 LYFQSMMTGEPTRHVVVMGVSGSGKTTIAHGVADET-------GLEFAEADAFHSPENIATMQRGIPLTDEDRWPWLRSL 90 (200)
T ss_dssp ----------CCCEEEEECCTTSCHHHHHHHHHHHH-------CCEEEEGGGGSCHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred hHHHhhhcCCCCcEEEEECCCCCCHHHHHHHHHHhh-------CCeEEcccccccHHHHHHHhcCCCCCCcccccHHHHH
Confidence 333444667899999999999999999999999875 7888988775432222 23467777764433333333
Q ss_pred HHH
Q 006897 165 ETL 167 (627)
Q Consensus 165 e~l 167 (627)
+++
T Consensus 91 ~~~ 93 (200)
T 4eun_A 91 AEW 93 (200)
T ss_dssp HHH
T ss_pred HHH
Confidence 333
|
| >3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum} | Back alignment and structure |
|---|
Probab=98.59 E-value=1.2e-08 Score=100.86 Aligned_cols=38 Identities=21% Similarity=0.243 Sum_probs=22.9
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHH-cCCC
Q 006897 85 HILKSVSFEARDSEILAVVGPSGTGKSSLLRIIS-GRVR 122 (627)
Q Consensus 85 ~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~-Gl~~ 122 (627)
+..+++||++++|++++|+||||||||||+++|+ |+++
T Consensus 15 ~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~ 53 (231)
T 3lnc_A 15 QTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKN 53 (231)
T ss_dssp -------CCEECCCEEEEECSCC----CHHHHHHC----
T ss_pred cccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 4689999999999999999999999999999999 9974
|
| >3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X* | Back alignment and structure |
|---|
Probab=98.58 E-value=3.8e-09 Score=100.27 Aligned_cols=137 Identities=10% Similarity=0.163 Sum_probs=77.8
Q ss_pred ee--eceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCc--cC-CC-----hhhhcccEEEEccCC
Q 006897 86 IL--KSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCH--QI-KK-----PAQLRKICGFVAQED 155 (627)
Q Consensus 86 iL--~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~--~~-~~-----~~~~r~~ig~v~Q~~ 155 (627)
.+ +++++++.+| +++|+||||||||||+++|.+++.+.. |...-.+. ++ .. ....+..|..++|++
T Consensus 14 ~~~~~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~~~---~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~ 89 (182)
T 3kta_A 14 SYGNKKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGGLS---AKAMRASRISDLIFAGSKNEPPAKYAEVAIYFNNE 89 (182)
T ss_dssp GGCSSCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTCCC---TGGGTCSSGGGGBCCCC----CCSCEEEEEEEECT
T ss_pred eecCccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcCCc---ccccccccchheeecccccCCCCceEEEEEEEeCC
Confidence 46 7899999999 999999999999999999999876542 22111110 11 00 012345688999975
Q ss_pred CC-C-C---CCCHHHHHHHH--HHhcCCCCCHHHHHHHHHHHHHHcCCcccc-CCcCCccccCCCCCCCHHHHHHHHHHH
Q 006897 156 NL-L-P---LLTVKETLMFS--ANFRLKGMSHKEKEDRVESLMDELGLTHVA-GSFVGDEENRGISGLDSTSALQVIELL 227 (627)
Q Consensus 156 ~l-~-~---~lTV~e~l~~~--~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~-~~~~gGe~qrPtsgLD~~~~~~i~~~L 227 (627)
.- + + .++|...+.-. ..++..+ .....+++.++++.++++... +-...|+.++ +.-++|..+.++++.+
T Consensus 90 ~~~~~~~~~~~~i~r~~~~~~~~~~~i~g--~~~~~~~~~~~l~~~~l~~~~~~~~~qg~~~~-l~~~~~~~r~~~ld~~ 166 (182)
T 3kta_A 90 DRGFPIDEDEVVIRRRVYPDGRSSYWLNG--RRATRSEILDILTAAMISPDGYNIVLQGDITK-FIKMSPLERRLLIDDI 166 (182)
T ss_dssp TCCSSSSSSEEEEEEEECTTSCEEEEETT--EEECHHHHHHHHHHTTCCTTCTTEECTTCTTH-HHHSCHHHHHHHHHHH
T ss_pred CcccccCCcEEEEEEEEEeCCcEEEEECC--eEcCHHHHHHHHHHcCCCCCCCEEEEcccHHH-HHhCCHHHHHHHHHHH
Confidence 31 1 1 12322211000 0001111 112346688899999986532 2223454432 3346788888877766
Q ss_pred HH
Q 006897 228 AS 229 (627)
Q Consensus 228 ~~ 229 (627)
-.
T Consensus 167 ~g 168 (182)
T 3kta_A 167 SG 168 (182)
T ss_dssp HT
T ss_pred HC
Confidence 43
|
| >1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=98.48 E-value=6.3e-09 Score=106.03 Aligned_cols=79 Identities=16% Similarity=0.207 Sum_probs=61.2
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCccCCC--hhhhcccEEEEccCCC-CCCC
Q 006897 84 LHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKK--PAQLRKICGFVAQEDN-LLPL 160 (627)
Q Consensus 84 ~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~~~~--~~~~r~~ig~v~Q~~~-l~~~ 160 (627)
..+++++++++++| ++|+||||+|||||+++|++... .|.+.+++.++.. ....++.+++++|+.. ..+.
T Consensus 62 ~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~-----~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 134 (278)
T 1iy2_A 62 PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPC 134 (278)
T ss_dssp HHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT-----CCEEEEEHHHHHHSTTTHHHHHHHHHHHHHHTSCSE
T ss_pred HHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC-----CCEEEecHHHHHHHHhhHHHHHHHHHHHHHHhcCCc
Confidence 35799999999999 89999999999999999999875 2889998876421 1223445778888753 5667
Q ss_pred CCHHHHHHH
Q 006897 161 LTVKETLMF 169 (627)
Q Consensus 161 lTV~e~l~~ 169 (627)
+++.|++..
T Consensus 135 i~~iDeid~ 143 (278)
T 1iy2_A 135 IVFIDEIDA 143 (278)
T ss_dssp EEEEETHHH
T ss_pred EEehhhhHh
Confidence 788888854
|
| >1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* | Back alignment and structure |
|---|
Probab=98.47 E-value=6.9e-09 Score=104.09 Aligned_cols=104 Identities=18% Similarity=0.239 Sum_probs=68.8
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCccCCC--hhhhcccEEEEccCC-CCCCC
Q 006897 84 LHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKK--PAQLRKICGFVAQED-NLLPL 160 (627)
Q Consensus 84 ~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~~~~--~~~~r~~ig~v~Q~~-~l~~~ 160 (627)
..+++++++++++| ++|+||||+|||||+++|++... .|.+.+++.++.. ....++.+++++|+. ...+.
T Consensus 38 ~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~-----~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 110 (254)
T 1ixz_A 38 PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPC 110 (254)
T ss_dssp HHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT-----CCEEEEEHHHHHHSCTTHHHHHHHHHHHHHTTSSSE
T ss_pred HHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC-----CCEEEeeHHHHHHHHhhHHHHHHHHHHHHHHhcCCe
Confidence 35799999999999 99999999999999999999874 2889998866421 122344577788874 35567
Q ss_pred CCHHHHHHHHHHhcCCC--CCHHHHHHHHHHHHHHc
Q 006897 161 LTVKETLMFSANFRLKG--MSHKEKEDRVESLMDEL 194 (627)
Q Consensus 161 lTV~e~l~~~~~~~~~~--~~~~~~~~~v~~~l~~l 194 (627)
+++.|++......+... ...++..+.+.+++..+
T Consensus 111 i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l 146 (254)
T 1ixz_A 111 IVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEM 146 (254)
T ss_dssp EEEEETHHHHHC---------CHHHHHHHHHHHHHH
T ss_pred EEEehhhhhhhcccCccccccchHHHHHHHHHHHHH
Confidence 78888884332111100 01233445566666554
|
| >2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=98.46 E-value=9.2e-09 Score=97.26 Aligned_cols=61 Identities=18% Similarity=0.275 Sum_probs=43.3
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCccCCC-----hhhhc-ccEE----EEccCCCCC
Q 006897 98 EILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKK-----PAQLR-KICG----FVAQEDNLL 158 (627)
Q Consensus 98 e~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~~~~-----~~~~r-~~ig----~v~Q~~~l~ 158 (627)
++++|+|+||||||||+++|+|++++.+...|.|.++|.++.+ ...+| +.+| +++|+..+|
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~ 73 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAF 73 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEE
Confidence 5899999999999999999999998863345999999987532 23455 3566 889987655
|
| >3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=98.44 E-value=2.6e-07 Score=97.25 Aligned_cols=153 Identities=13% Similarity=0.128 Sum_probs=92.8
Q ss_pred eeeceE--EEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceE-EECCccCCChhhhcccEEEEccCCCCCCCCC
Q 006897 86 ILKSVS--FEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSI-TVNCHQIKKPAQLRKICGFVAQEDNLLPLLT 162 (627)
Q Consensus 86 iL~~vs--l~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i-~i~g~~~~~~~~~r~~ig~v~Q~~~l~~~lT 162 (627)
-||.+- .-+++|+++.|.||+|||||||+..+++...+.+ |.+ ++++....+ ....+++|+.+|+..+....+
T Consensus 48 ~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~~~g---g~VlyId~E~s~~-~~ra~rlgv~~~~l~i~~~~~ 123 (356)
T 3hr8_A 48 AIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQKMG---GVAAFIDAEHALD-PVYAKNLGVDLKSLLISQPDH 123 (356)
T ss_dssp HHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHHHTT---CCEEEEESSCCCC-HHHHHHHTCCGGGCEEECCSS
T ss_pred HHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHHhcC---CeEEEEecccccc-hHHHHHcCCchhhhhhhhccC
Confidence 455543 3689999999999999999999999998765432 544 666665322 234456787777755554557
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCC-----ccccCCc-----CC--ccccCCCCCCCHHHHHHHHHHHHHH
Q 006897 163 VKETLMFSANFRLKGMSHKEKEDRVESLMDELGL-----THVAGSF-----VG--DEENRGISGLDSTSALQVIELLASM 230 (627)
Q Consensus 163 V~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL-----~~~~~~~-----~g--Ge~qrPtsgLD~~~~~~i~~~L~~l 230 (627)
+.+.+.... .+++..+. +...... .| |++|+ ++-.....++++.|+++
T Consensus 124 ~e~~l~~~~-----------------~l~~~~~~dlvVIDSi~~l~~~~el~g~~G~~q~---~~qar~la~~L~~L~~l 183 (356)
T 3hr8_A 124 GEQALEIVD-----------------ELVRSGVVDLIVVDSVAALVPRAEIEGAMGDMQV---GLQARLMSQALRKIAGS 183 (356)
T ss_dssp HHHHHHHHH-----------------HHHHTSCCSEEEEECTTTCCCHHHHTTCCCSSCS---SHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-----------------HHhhhcCCCeEEehHhhhhcChhhhcccchhhHH---HHHHHHHHHHHHHHHHH
Confidence 766654422 11111111 1111111 11 33332 12223344677778888
Q ss_pred HHcCCCEEEEEccCc---------------cHHHHHHhhhheeecCC
Q 006897 231 AKAKQRTVVLSIHQP---------------SYRILQYISKFLILSRG 262 (627)
Q Consensus 231 ~~~~g~Tii~~tH~~---------------~~~i~~~~D~i~vL~~G 262 (627)
+++.|.|||++.|-. ...+..++|-++.+..+
T Consensus 184 ak~~~~tVI~inqv~~k~g~~fg~p~~~~GG~~l~h~~~~rl~l~k~ 230 (356)
T 3hr8_A 184 VNKSKAVVIFTNQIRMKIGVMFGSPETTTGGLALKFYATMRMEVRRG 230 (356)
T ss_dssp HHTSSCEEEEEEESSSCSSSSSCSCSSCTHHHHHHHHCSEEEEEEEE
T ss_pred HHhcCCEEEEEeeeeeccccccCCcccCCCcchhhhhCcEEEEEEec
Confidence 888899999998851 11145678888888753
|
| >3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.44 E-value=1.4e-08 Score=102.05 Aligned_cols=52 Identities=21% Similarity=0.323 Sum_probs=35.8
Q ss_pred eEEEEeE-EEEEccCcccccccccCCccccceeeceEEEEeC---CeEEEEECCCCCcHHHHHHHHHcCC
Q 006897 56 KVTVRNL-SYAIQPNTSILSHLLHEPKVPLHILKSVSFEARD---SEILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 56 ~l~~~nl-s~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~---Ge~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
+|+++|+ +++|. +..++|+|+||++++ |++++|+|++||||||+.++|++.+
T Consensus 17 ~l~~~~~~~~~~~--------------~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 17 LLETGSLLHSPFD--------------EEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp -----------------------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred ceEEcceeeEEec--------------CcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 6999999 99982 134699999999999 9999999999999999999999865
|
| >3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP} | Back alignment and structure |
|---|
Probab=98.44 E-value=4.4e-08 Score=95.30 Aligned_cols=44 Identities=18% Similarity=0.394 Sum_probs=33.9
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCcc
Q 006897 94 ARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQ 137 (627)
Q Consensus 94 i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~ 137 (627)
.++|++++|+||||||||||+++|+|++++.+...|.|.++|..
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~~ 62 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGFH 62 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGGB
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCCc
Confidence 57999999999999999999999999987531112555555443
|
| >2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A* | Back alignment and structure |
|---|
Probab=98.42 E-value=2e-07 Score=95.89 Aligned_cols=142 Identities=13% Similarity=0.171 Sum_probs=80.8
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCccCCChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhc
Q 006897 95 RDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFR 174 (627)
Q Consensus 95 ~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~~~~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~ 174 (627)
++|++++++||||+||||+++.|++.+.+.. | +++.++.+|.. ..+..|++...+...
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~---G----------------~~V~lv~~D~~---r~~a~eqL~~~~~~~ 160 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEK---H----------------KKIAFITTDTY---RIAAVEQLKTYAELL 160 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTT---C----------------CCEEEEECCCS---STTHHHHHHHHHTTT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhc---C----------------CEEEEEecCcc---cchHHHHHHHHHHhc
Confidence 5799999999999999999999999886532 4 13555555542 246677776643211
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCccccCCcCCccccCCCCCCCHHHHHHHHHHHHHHH--HcCCCEEEE-EccCccHHHHH
Q 006897 175 LKGMSHKEKEDRVESLMDELGLTHVAGSFVGDEENRGISGLDSTSALQVIELLASMA--KAKQRTVVL-SIHQPSYRILQ 251 (627)
Q Consensus 175 ~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~gGe~qrPtsgLD~~~~~~i~~~L~~l~--~~~g~Tii~-~tH~~~~~i~~ 251 (627)
.-..........+...+..+ .+ .+-.+- -|+|+|+.....+.++.+-+. ...+.++++ ++|+.+ ++.+
T Consensus 161 gl~~~~~~~~~~l~~al~~~--~~-~dlvIi-----DT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~~~-~~~~ 231 (296)
T 2px0_A 161 QAPLEVCYTKEEFQQAKELF--SE-YDHVFV-----DTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAKYE-DMKH 231 (296)
T ss_dssp TCCCCBCSSHHHHHHHHHHG--GG-SSEEEE-----ECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBCHH-HHHH
T ss_pred CCCeEecCCHHHHHHHHHHh--cC-CCEEEE-----eCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCCHH-HHHH
Confidence 00000000012233344432 11 111111 267888765544444333221 112334444 489876 5888
Q ss_pred HhhhheeecCCeEEee
Q 006897 252 YISKFLILSRGSVVHY 267 (627)
Q Consensus 252 ~~D~i~vL~~G~iv~~ 267 (627)
.++++..+..+.++..
T Consensus 232 ~~~~~~~l~~~giVlt 247 (296)
T 2px0_A 232 IVKRFSSVPVNQYIFT 247 (296)
T ss_dssp HTTTTSSSCCCEEEEE
T ss_pred HHHHHhcCCCCEEEEe
Confidence 9999888888888764
|
| >1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=98.38 E-value=1e-07 Score=97.82 Aligned_cols=98 Identities=16% Similarity=0.189 Sum_probs=63.9
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCccCCChhhhcccEEEEccCCCCCCCCCHHHHHHHHHH--
Q 006897 95 RDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSAN-- 172 (627)
Q Consensus 95 ~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~~~~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~-- 172 (627)
+++.+++|.||||||||||.+.|++++.+. | . . ++.+.+|+||+.+++. ++++|+.++..
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~----g------~------~-~~~~~iv~~D~f~~~~-~~~~~l~~~~~~~ 90 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEK----Y------G------G-EKSIGYASIDDFYLTH-EDQLKLNEQFKNN 90 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHH----H------G------G-GSCEEEEEGGGGBCCH-HHHHHHHHHTTTC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhhc----C------C------C-CceEEEeccccccCCh-HHHHHHhcccccc
Confidence 478999999999999999999999987642 2 0 1 3446677999988875 89999987621
Q ss_pred --hcCCCCCHHHHHHHHHHHHHHcCCc------------cccCCcCCccccC
Q 006897 173 --FRLKGMSHKEKEDRVESLMDELGLT------------HVAGSFVGDEENR 210 (627)
Q Consensus 173 --~~~~~~~~~~~~~~v~~~l~~lgL~------------~~~~~~~gGe~qr 210 (627)
+...+.+.....+.+.+.++.+.-. ..-...+|||+||
T Consensus 91 ~l~~~~g~p~a~d~~~l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R 142 (290)
T 1odf_A 91 KLLQGRGLPGTHDMKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDR 142 (290)
T ss_dssp GGGSSSCSTTSBCHHHHHHHHHHHTC------CCEEEECCEETTHHHHTCEE
T ss_pred chhhhccCcchhHHHHHHHHHHHhhccCccccCcceeeccCccccCCccccc
Confidence 1111122222344566667766332 1122345888886
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* | Back alignment and structure |
|---|
Probab=98.34 E-value=1.2e-07 Score=87.34 Aligned_cols=50 Identities=18% Similarity=0.254 Sum_probs=44.2
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheee--cCCe
Q 006897 211 GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLIL--SRGS 263 (627)
Q Consensus 211 PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL--~~G~ 263 (627)
||+|||+.++..+.+.|+++.++ |+|||++||+++ +.+.||++++| ++|.
T Consensus 90 Pt~~LD~~~~~~l~~~l~~~~~~-~~tiiivsH~~~--~~~~~d~ii~l~~~~g~ 141 (148)
T 1f2t_B 90 PTPYLDEERRRKLITIMERYLKK-IPQVILVSHDEE--LKDAADHVIRISLENGS 141 (148)
T ss_dssp CSCTTCHHHHHHHHHHHHHTGGG-SSEEEEEESCGG--GGGGCSEEEEEEEETTE
T ss_pred CCccCCHHHHHHHHHHHHHHHcc-CCEEEEEEChHH--HHHhCCEEEEEEcCCCe
Confidence 99999999999999999998654 899999999984 57899999999 4564
|
| >1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A | Back alignment and structure |
|---|
Probab=98.33 E-value=1.2e-07 Score=98.60 Aligned_cols=81 Identities=17% Similarity=0.245 Sum_probs=63.0
Q ss_pred eeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCccCCCh------hhh-----cccEEEE-ccC
Q 006897 87 LKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKKP------AQL-----RKICGFV-AQE 154 (627)
Q Consensus 87 L~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~~~~~------~~~-----r~~ig~v-~Q~ 154 (627)
+++++|++++|++++|+|+||+||||++..|++.+.+.+ |+|.+.+.+.... ..+ +..++++ +|.
T Consensus 95 ~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g---~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~ 171 (320)
T 1zu4_A 95 KYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELG---YKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANK 171 (320)
T ss_dssp -CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTT---CCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSS
T ss_pred ccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCC---CeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCC
Confidence 478999999999999999999999999999999987653 8899888775332 123 5679999 777
Q ss_pred CCCCCCCCHHHHHHHH
Q 006897 155 DNLLPLLTVKETLMFS 170 (627)
Q Consensus 155 ~~l~~~lTV~e~l~~~ 170 (627)
....|..++.+++...
T Consensus 172 ~~~~p~~~~~~~l~~~ 187 (320)
T 1zu4_A 172 LNADPASVVFDAIKKA 187 (320)
T ss_dssp TTCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH
Confidence 6556655677777654
|
| >3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A* | Back alignment and structure |
|---|
Probab=98.32 E-value=1.3e-08 Score=98.34 Aligned_cols=51 Identities=18% Similarity=0.290 Sum_probs=42.6
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceE--EECCccC
Q 006897 84 LHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSI--TVNCHQI 138 (627)
Q Consensus 84 ~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i--~i~g~~~ 138 (627)
..+.++.++..++|++++|+||||||||||+++|++++. .. |.+ .++|.++
T Consensus 12 ~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~-~~---G~~~~~~d~d~~ 64 (200)
T 3uie_A 12 VEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY-QK---GKLCYILDGDNV 64 (200)
T ss_dssp CCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH-HT---TCCEEEEEHHHH
T ss_pred cCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH-hc---CceEEEecCchh
Confidence 446778888889999999999999999999999999886 22 776 7887653
|
| >1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=98.28 E-value=2e-07 Score=90.05 Aligned_cols=28 Identities=32% Similarity=0.516 Sum_probs=23.8
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCC
Q 006897 95 RDSEILAVVGPSGTGKSSLLRIISGRVR 122 (627)
Q Consensus 95 ~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~ 122 (627)
++|++++|+||||||||||+++|+|+++
T Consensus 2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 2 AGPRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp ---CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 5899999999999999999999999874
|
| >4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis} | Back alignment and structure |
|---|
Probab=98.25 E-value=9.2e-08 Score=96.08 Aligned_cols=76 Identities=18% Similarity=0.180 Sum_probs=54.1
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHH---cCCCCCCCccceEE--------ECCccCCC---hhhhcccEEEE
Q 006897 86 ILKSVSFEARDSEILAVVGPSGTGKSSLLRIIS---GRVRDQDFDPRSIT--------VNCHQIKK---PAQLRKICGFV 151 (627)
Q Consensus 86 iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~---Gl~~~~~~~~G~i~--------i~g~~~~~---~~~~r~~ig~v 151 (627)
++++.+ ++|++++|+|||||||||++++|+ |+..++ .|.+. .+|.++.+ ...+++.++++
T Consensus 19 ~~~~m~---~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d---~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 92 (252)
T 4e22_A 19 ERPHMT---AIAPVITVDGPSGAGKGTLCKALAESLNWRLLD---SGAIYRVLALAALHHQVDISTEEALVPLAAHLDVR 92 (252)
T ss_dssp ----CT---TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEE---HHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEE
T ss_pred hhhhcC---CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCC---CCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEE
Confidence 445544 789999999999999999999999 987764 48888 78877532 34577889999
Q ss_pred ccCCC-----CCCCCCHHHHH
Q 006897 152 AQEDN-----LLPLLTVKETL 167 (627)
Q Consensus 152 ~Q~~~-----l~~~lTV~e~l 167 (627)
+|.+. .....++.+++
T Consensus 93 ~~~~~~~~~~~l~~~~v~~~i 113 (252)
T 4e22_A 93 FVSQNGQLQVILEGEDVSNEI 113 (252)
T ss_dssp EEEETTEEEEEETTEECTTGG
T ss_pred EecCCCCceEEECCeehhHHH
Confidence 97532 23344555554
|
| >3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.18 E-value=6.3e-07 Score=86.35 Aligned_cols=40 Identities=15% Similarity=0.175 Sum_probs=24.8
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 006897 82 VPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 82 ~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
+...+++||||++++|++++|+||+||||||+.+.|++.+
T Consensus 10 ~~~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 10 GVDLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp --------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 4456899999999999999999999999999999999765
|
| >1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A* | Back alignment and structure |
|---|
Probab=98.18 E-value=1.2e-07 Score=89.26 Aligned_cols=38 Identities=21% Similarity=0.413 Sum_probs=32.5
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCccCC
Q 006897 95 RDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIK 139 (627)
Q Consensus 95 ~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~~~ 139 (627)
.+|++++|+||||||||||++.|++.+ |.+.+++.++.
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~-------g~~~i~~d~~~ 43 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL-------HAAFLDGDFLH 43 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH-------TCEEEEGGGGC
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh-------CcEEEeCcccc
Confidence 468999999999999999999999864 77788876643
|
| >2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=98.11 E-value=1.3e-06 Score=84.16 Aligned_cols=32 Identities=22% Similarity=0.435 Sum_probs=27.6
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC
Q 006897 92 FEARDSEILAVVGPSGTGKSSLLRIISGRVRD 123 (627)
Q Consensus 92 l~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~ 123 (627)
+++++|++++|+||||||||||+++|++++.|
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~ 32 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPST 32 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCTTC
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhhCC
Confidence 36789999999999999999999999999855
|
| >2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A | Back alignment and structure |
|---|
Probab=98.10 E-value=1.2e-06 Score=95.71 Aligned_cols=173 Identities=15% Similarity=0.162 Sum_probs=95.0
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccc-eEEECCccCCChhhhccc-----EEEEccCCCC
Q 006897 84 LHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPR-SITVNCHQIKKPAQLRKI-----CGFVAQEDNL 157 (627)
Q Consensus 84 ~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G-~i~i~g~~~~~~~~~r~~-----ig~v~Q~~~l 157 (627)
...|+++..-+++|+++.|.|++|+|||||+..+++...+.. | .+.+.+.+. +..++.++ .++-.+.- .
T Consensus 190 ~~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~---g~~Vl~~s~E~-s~~~l~~r~~~~~~~~~~~~l-~ 264 (454)
T 2r6a_A 190 FTELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKT---NENVAIFSLEM-SAQQLVMRMLCAEGNINAQNL-R 264 (454)
T ss_dssp CHHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHS---SCCEEEEESSS-CHHHHHHHHHHHHHTCCHHHH-H
T ss_pred cHHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhC---CCcEEEEECCC-CHHHHHHHHHHHHcCCCHHHH-h
Confidence 357899998899999999999999999999999988664321 3 455544332 22222211 12222210 0
Q ss_pred CCCCCHHHHHHH--HH-Hhc-----C---CCCCHHHHHHHHHHHHHHcCCccc-cCCcC---CccccCCCCCCCHHHHHH
Q 006897 158 LPLLTVKETLMF--SA-NFR-----L---KGMSHKEKEDRVESLMDELGLTHV-AGSFV---GDEENRGISGLDSTSALQ 222 (627)
Q Consensus 158 ~~~lTV~e~l~~--~~-~~~-----~---~~~~~~~~~~~v~~~l~~lgL~~~-~~~~~---gGe~qrPtsgLD~~~~~~ 222 (627)
...++-.|--.+ +. .+. . ...+..+...++.++....+.+-+ .|.+. ++.. -+.-+.....+
T Consensus 265 ~g~l~~~~~~~~~~a~~~l~~~~l~i~d~~~~s~~~i~~~~~~l~~~~~~~livID~l~~~~~~~~---~~~~~~~~i~~ 341 (454)
T 2r6a_A 265 TGKLTPEDWGKLTMAMGSLSNAGIYIDDTPSIRVSDIRAKCRRLKQESGLGMIVIDYLQLIQGSGR---SKENRQQEVSE 341 (454)
T ss_dssp TSCCCHHHHHHHHHHHHHHHSSCEEEECCTTCCHHHHHHHHHHHHTTTCCCEEEEECGGGSCCSCC-------CHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEccHHHhccCCC---CCCCHHHHHHH
Confidence 112332221111 10 000 0 012333444444444433333211 12111 1110 01124566688
Q ss_pred HHHHHHHHHHcCCCEEEEEcc---------C--ccH-------HHHHHhhhheeecCCeE
Q 006897 223 VIELLASMAKAKQRTVVLSIH---------Q--PSY-------RILQYISKFLILSRGSV 264 (627)
Q Consensus 223 i~~~L~~l~~~~g~Tii~~tH---------~--~~~-------~i~~~~D~i~vL~~G~i 264 (627)
+.+.|+.++++.|.+||+++| + |.. .+...||.|++|++++.
T Consensus 342 i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r~~~ 401 (454)
T 2r6a_A 342 ISRSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYRDDY 401 (454)
T ss_dssp HHHHHHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEETTC
T ss_pred HHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEecccc
Confidence 999999999888999999999 2 420 26788999999987764
|
| >2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ... | Back alignment and structure |
|---|
Probab=98.06 E-value=2.1e-06 Score=90.29 Aligned_cols=79 Identities=11% Similarity=0.103 Sum_probs=44.6
Q ss_pred eeeceE--EEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCccCCChhhhcccEEEEccCCCCCCCCCH
Q 006897 86 ILKSVS--FEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKKPAQLRKICGFVAQEDNLLPLLTV 163 (627)
Q Consensus 86 iL~~vs--l~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~~~~~~~~r~~ig~v~Q~~~l~~~lTV 163 (627)
-||.+- .-+++|+++.|.||+|+|||||+..++......+ ...++++.....+ ....+.+|+.+|+..+....++
T Consensus 48 ~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g--~~vlyi~~E~~~~-~~~a~~lG~~~~~l~i~~~~~~ 124 (349)
T 2zr9_A 48 SLDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAAG--GIAAFIDAEHALD-PEYAKKLGVDTDSLLVSQPDTG 124 (349)
T ss_dssp HHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTT--CCEEEEESSCCCC-HHHHHHTTCCGGGCEEECCSSH
T ss_pred HHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhCC--CeEEEEECCCCcC-HHHHHHcCCCHHHeEEecCCCH
Confidence 355543 3689999999999999999999888875443221 1234454443112 2223334544444333333355
Q ss_pred HHHH
Q 006897 164 KETL 167 (627)
Q Consensus 164 ~e~l 167 (627)
.+.+
T Consensus 125 e~~l 128 (349)
T 2zr9_A 125 EQAL 128 (349)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
|
| >1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=98.01 E-value=2.2e-06 Score=81.24 Aligned_cols=29 Identities=17% Similarity=0.377 Sum_probs=26.3
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCCC
Q 006897 95 RDSEILAVVGPSGTGKSSLLRIISGRVRD 123 (627)
Q Consensus 95 ~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~ 123 (627)
.+|++++|+||||||||||+++|++..++
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~~ 31 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKHPD 31 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHCTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCCc
Confidence 36899999999999999999999998753
|
| >2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A* | Back alignment and structure |
|---|
Probab=97.97 E-value=1.9e-06 Score=94.60 Aligned_cols=46 Identities=20% Similarity=0.214 Sum_probs=35.7
Q ss_pred ceEEEEeCCeEEEEECCCCCcHHHHHHHHHc--CCCCCCCccceEEECCcc
Q 006897 89 SVSFEARDSEILAVVGPSGTGKSSLLRIISG--RVRDQDFDPRSITVNCHQ 137 (627)
Q Consensus 89 ~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~G--l~~~~~~~~G~i~i~g~~ 137 (627)
.+++++.++..++|.|++||||||+++.|.. +.+.. .|++.+.+.|
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~---p~~v~l~liD 206 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQ---PEDVRFIMID 206 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCC---TTTEEEEEEC
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCC---CceEEEEEEC
Confidence 4788889999999999999999999999875 33322 2667665555
|
| >2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A* | Back alignment and structure |
|---|
Probab=97.95 E-value=3.1e-06 Score=83.50 Aligned_cols=39 Identities=18% Similarity=0.247 Sum_probs=34.1
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCcc
Q 006897 92 FEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQ 137 (627)
Q Consensus 92 l~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~ 137 (627)
.+.++|++++|.|+||||||||+++|+|+ . |+|.+.+++
T Consensus 15 ~~~~~g~~i~i~G~~GsGKSTl~~~L~~~----~---g~v~~~~~~ 53 (230)
T 2vp4_A 15 AEGTQPFTVLIEGNIGSGKTTYLNHFEKY----K---NDICLLTEP 53 (230)
T ss_dssp TTTCCCEEEEEECSTTSCHHHHHHTTGGG----T---TTEEEECCT
T ss_pred CCCCCceEEEEECCCCCCHHHHHHHHHhc----c---CCeEEEecC
Confidence 34578999999999999999999999997 2 888888876
|
| >3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=97.87 E-value=6.4e-06 Score=79.93 Aligned_cols=29 Identities=21% Similarity=0.410 Sum_probs=27.2
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCCC
Q 006897 95 RDSEILAVVGPSGTGKSSLLRIISGRVRD 123 (627)
Q Consensus 95 ~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~ 123 (627)
++|++++|+||||||||||++.|++.+++
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 58999999999999999999999999865
|
| >1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=97.84 E-value=4.1e-06 Score=80.78 Aligned_cols=42 Identities=26% Similarity=0.350 Sum_probs=35.2
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCcc
Q 006897 93 EARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQ 137 (627)
Q Consensus 93 ~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~ 137 (627)
..++|++++|+|+||||||||++.|++.+++.+ |.+.+.+.+
T Consensus 18 ~~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~---~~v~~~~~d 59 (201)
T 1rz3_A 18 KTAGRLVLGIDGLSRSGKTTLANQLSQTLREQG---ISVCVFHMD 59 (201)
T ss_dssp CCSSSEEEEEEECTTSSHHHHHHHHHHHHHHTT---CCEEEEEGG
T ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHHHhhcC---CeEEEeccC
Confidence 357899999999999999999999999886643 777776655
|
| >1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A | Back alignment and structure |
|---|
Probab=97.80 E-value=2.7e-06 Score=90.25 Aligned_cols=38 Identities=18% Similarity=0.320 Sum_probs=35.5
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 006897 84 LHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 84 ~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
..+|+++|+.+++|++++|+||||||||||+++|+|..
T Consensus 156 ~~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 156 YDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp HHHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 35899999999999999999999999999999999864
|
| >3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=97.77 E-value=2.2e-06 Score=88.91 Aligned_cols=41 Identities=17% Similarity=0.370 Sum_probs=35.4
Q ss_pred ccceeeceEEEEeCCe------EEEEECCCCCcHHHHHHHHHcCCCC
Q 006897 83 PLHILKSVSFEARDSE------ILAVVGPSGTGKSSLLRIISGRVRD 123 (627)
Q Consensus 83 ~~~iL~~vsl~i~~Ge------~~aIiGpnGsGKSTLl~~L~Gl~~~ 123 (627)
.+..|++++..+.+++ ++||+||||||||||+++|++++..
T Consensus 72 ~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~ 118 (321)
T 3tqc_A 72 ARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSR 118 (321)
T ss_dssp HHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred chHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 3457888888888777 9999999999999999999998763
|
| >3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=97.77 E-value=9.4e-06 Score=78.18 Aligned_cols=31 Identities=19% Similarity=0.374 Sum_probs=26.5
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHHcCCC
Q 006897 92 FEARDSEILAVVGPSGTGKSSLLRIISGRVR 122 (627)
Q Consensus 92 l~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~ 122 (627)
+...+|++++|+||||||||||++.|++..+
T Consensus 14 ~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 14 LYFQGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp --CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 3445899999999999999999999998765
|
| >1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=97.72 E-value=1e-05 Score=87.55 Aligned_cols=33 Identities=27% Similarity=0.484 Sum_probs=28.9
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC
Q 006897 92 FEARDSEILAVVGPSGTGKSSLLRIISGRVRDQ 124 (627)
Q Consensus 92 l~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~ 124 (627)
+++.+|++++|+|||||||||||++|+++..+.
T Consensus 21 ~~~~~~~~~~i~G~nG~GKstll~ai~~~~~~~ 53 (430)
T 1w1w_A 21 VGFGESNFTSIIGPNGSGKSNMMDAISFVLGVR 53 (430)
T ss_dssp EECTTCSEEEEECSTTSSHHHHHHHHHHHTTC-
T ss_pred EEecCCCEEEEECCCCCCHHHHHHHHHhhhccc
Confidence 456789999999999999999999999987653
|
| >2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A* | Back alignment and structure |
|---|
Probab=97.69 E-value=2e-05 Score=76.05 Aligned_cols=31 Identities=16% Similarity=0.339 Sum_probs=27.6
Q ss_pred EEEEeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 006897 91 SFEARDSEILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 91 sl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
--++++|++++|+|++|||||||++.|++.+
T Consensus 15 ~~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 15 VPRGSKTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CCCSCCCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred cccCCCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 3456789999999999999999999999875
|
| >1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A* | Back alignment and structure |
|---|
Probab=97.67 E-value=3.6e-06 Score=82.31 Aligned_cols=59 Identities=17% Similarity=0.258 Sum_probs=41.6
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEE--------CCccCCC---hhhhcccEEEEccCC
Q 006897 97 SEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITV--------NCHQIKK---PAQLRKICGFVAQED 155 (627)
Q Consensus 97 Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i--------~g~~~~~---~~~~r~~ig~v~Q~~ 155 (627)
+.+++|+|||||||||+.++|++.+.....+.|++.. +|.++.+ ...+++.+++++|++
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 74 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVST 74 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeecc
Confidence 5689999999999999999999865221123477765 5655322 134667789988864
|
| >3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=97.67 E-value=9.4e-06 Score=91.75 Aligned_cols=68 Identities=18% Similarity=0.148 Sum_probs=55.7
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCccCCChhhhcccEEEEccCC
Q 006897 83 PLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKKPAQLRKICGFVAQED 155 (627)
Q Consensus 83 ~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~~~~~~~~r~~ig~v~Q~~ 155 (627)
...+++++++.+++|+.++|+||||+|||||+++|+|++++.. .|.+.+++.+. ......++++|+..
T Consensus 46 ~~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~--~~~~~~~~~~~---~~~~p~i~~~p~g~ 113 (604)
T 3k1j_A 46 QEHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTET--LEDILVFPNPE---DENMPRIKTVPACQ 113 (604)
T ss_dssp CHHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSS--CEEEEEECCTT---CTTSCEEEEEETTH
T ss_pred chhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCccc--CCeEEEeCCcc---cccCCcEEEEecch
Confidence 3568999999999999999999999999999999999998753 38888887663 23455688888753
|
| >3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans} | Back alignment and structure |
|---|
Probab=97.65 E-value=8.7e-06 Score=90.60 Aligned_cols=43 Identities=28% Similarity=0.433 Sum_probs=36.3
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEE-ECCcc
Q 006897 93 EARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSIT-VNCHQ 137 (627)
Q Consensus 93 ~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~-i~g~~ 137 (627)
.+++|++++|+|+||||||||+++|+|++.+.+ .|++. ++|.+
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~--G~~i~~lDgD~ 408 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLMEMG--GRCVTLLDGDI 408 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTC--SSCEEEESSHH
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhcccC--CceEEEECCcH
Confidence 578999999999999999999999999998753 13675 77755
|
| >2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A* | Back alignment and structure |
|---|
Probab=97.65 E-value=3e-06 Score=96.82 Aligned_cols=134 Identities=11% Similarity=0.092 Sum_probs=77.2
Q ss_pred EEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCccCCC--hhhhcccEEEEccCCCCCCCCCHHHHHH
Q 006897 91 SFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKK--PAQLRKICGFVAQEDNLLPLLTVKETLM 168 (627)
Q Consensus 91 sl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~~~~--~~~~r~~ig~v~Q~~~l~~~lTV~e~l~ 168 (627)
|+++++|+.++|+|++|+|||||++.|++...+.. ..|+| .+|..+.+ ..+.++.+++.+|...++.. ++..||.
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~-~~G~V-~~g~~~~d~~~~e~~~giti~~~~~~~~~~-~~~~nli 79 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKE-RRGRV-EEGTTTTDYTPEAKLHRTTVRTGVAPLLFR-GHRVFLL 79 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSS-SCCCG-GGTCCSSCCSHHHHHTTSCCSCEEEEEEET-TEEEEEE
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCC-cccee-cCCcccccCCHHHHhcCCeEEecceEEeeC-CEEEEEE
Confidence 45678899999999999999999999997654422 23777 56655432 33455667777776554432 3333332
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHHHcCCccccCCcCCccccCCCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccH
Q 006897 169 FSANFRLKGMSHKEKEDRVESLMDELGLTHVAGSFVGDEENRGISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSY 247 (627)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~gGe~qrPtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~ 247 (627)
- .++. .+....+...+...+..-+.- -++.|+|+.+. ++++.++ +.+..+|++.|.++.
T Consensus 80 D-----TpG~--~~f~~~~~~~l~~ad~~ilVv--------D~~~g~~~qt~-~~~~~~~----~~~ip~ilv~NKiD~ 138 (665)
T 2dy1_A 80 D-----APGY--GDFVGEIRGALEAADAALVAV--------SAEAGVQVGTE-RAWTVAE----RLGLPRMVVVTKLDK 138 (665)
T ss_dssp E-----CCCS--GGGHHHHHHHHHHCSEEEEEE--------ETTTCSCHHHH-HHHHHHH----HTTCCEEEEEECGGG
T ss_pred e-----CCCc--cchHHHHHHHHhhcCcEEEEE--------cCCcccchhHH-HHHHHHH----HccCCEEEEecCCch
Confidence 1 1121 122234555555444321110 05678887765 3333332 247889999998763
|
| >1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=97.61 E-value=2e-05 Score=73.46 Aligned_cols=27 Identities=30% Similarity=0.585 Sum_probs=24.4
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCCC
Q 006897 96 DSEILAVVGPSGTGKSSLLRIISGRVR 122 (627)
Q Consensus 96 ~Ge~~aIiGpnGsGKSTLl~~L~Gl~~ 122 (627)
.|++++|+||||||||||+++|++.+.
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 478899999999999999999998763
|
| >1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10 | Back alignment and structure |
|---|
Probab=97.60 E-value=1e-05 Score=83.41 Aligned_cols=47 Identities=19% Similarity=0.335 Sum_probs=39.2
Q ss_pred ceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCccC
Q 006897 89 SVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQI 138 (627)
Q Consensus 89 ~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~~ 138 (627)
.+++..++|++++|+|||||||||+++.|++.+.+.+ |+|.+.+.+.
T Consensus 96 ~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g---~kV~lv~~D~ 142 (306)
T 1vma_A 96 KLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEG---KSVVLAAADT 142 (306)
T ss_dssp CCCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTT---CCEEEEEECT
T ss_pred CCcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcC---CEEEEEcccc
Confidence 3456678999999999999999999999999987643 7888876653
|
| >1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* | Back alignment and structure |
|---|
Probab=97.59 E-value=3e-05 Score=73.72 Aligned_cols=40 Identities=35% Similarity=0.531 Sum_probs=31.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCCCC--------CccceEEECCccC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGRVRDQD--------FDPRSITVNCHQI 138 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl~~~~~--------~~~G~i~i~g~~~ 138 (627)
.++|+|+||||||||++.++|...+.. ...|++.++|+++
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~ 78 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTI 78 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEE
Confidence 689999999999999999999875421 1248888888653
|
| >1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A* | Back alignment and structure |
|---|
Probab=97.59 E-value=1.5e-05 Score=81.80 Aligned_cols=46 Identities=15% Similarity=0.239 Sum_probs=40.8
Q ss_pred eceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCccC
Q 006897 88 KSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQI 138 (627)
Q Consensus 88 ~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~~ 138 (627)
++++++ +|++++++|+||+||||+++.|+|.+.+.+ |+|.+.+.+.
T Consensus 91 ~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~~---~~v~l~~~d~ 136 (295)
T 1ls1_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKG---RRPLLVAADT 136 (295)
T ss_dssp CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHTT---CCEEEEECCS
T ss_pred ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcC---CeEEEecCCc
Confidence 678888 999999999999999999999999987643 8899888774
|
| >1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A* | Back alignment and structure |
|---|
Probab=97.55 E-value=4e-05 Score=70.33 Aligned_cols=30 Identities=37% Similarity=0.570 Sum_probs=25.2
Q ss_pred eceEEEEeCCeEEEEECCCCCcHHHHHHHHH
Q 006897 88 KSVSFEARDSEILAVVGPSGTGKSSLLRIIS 118 (627)
Q Consensus 88 ~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~ 118 (627)
++.++++.+| +++|+|||||||||++++|.
T Consensus 15 ~~~~i~f~~g-~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 15 SDTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp SSEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred cceEEEcCCC-eEEEECCCCCCHHHHHHHHH
Confidence 4455666665 99999999999999999986
|
| >3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B* | Back alignment and structure |
|---|
Probab=97.52 E-value=3.2e-05 Score=72.90 Aligned_cols=59 Identities=19% Similarity=0.182 Sum_probs=45.3
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheee--cCCeE-EeeCCHHHH
Q 006897 211 GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLIL--SRGSV-VHYGSLELL 273 (627)
Q Consensus 211 PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL--~~G~i-v~~G~~~~~ 273 (627)
|++|||+.++..+.+.|+++.+ +.++|++||+.. +.+.||+++.+ .+|.. +...+.++.
T Consensus 95 p~a~LD~~~~~~~~~~l~~~~~--~~~~ivith~~~--~~~~ad~i~~v~~~~g~s~~~~~~~~~~ 156 (173)
T 3kta_B 95 IDAHLDDANVKRVADLIKESSK--ESQFIVITLRDV--MMANADKIIGVSMRDGVSKVVSLSLEKA 156 (173)
T ss_dssp TTTTCCHHHHHHHHHHHHHHTT--TSEEEEECSCHH--HHTTCSEEEEEEEETTEEEEEECCHHHH
T ss_pred CccCCCHHHHHHHHHHHHHhcc--CCEEEEEEecHH--HHHhCCEEEEEEecCCEEEEEEEEcHHH
Confidence 9999999999999999999864 468999999975 57899999865 46643 223444433
|
| >2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.52 E-value=5.6e-06 Score=90.99 Aligned_cols=47 Identities=26% Similarity=0.441 Sum_probs=41.4
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCccC
Q 006897 85 HILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQI 138 (627)
Q Consensus 85 ~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~~ 138 (627)
.+++++++.+++| +.|+||||+|||||+++|+|... .+.+.+++.++
T Consensus 54 ~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~-----~~~i~i~g~~~ 100 (499)
T 2dhr_A 54 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-----VPFITASGSDF 100 (499)
T ss_dssp GGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT-----CCEEEEEGGGG
T ss_pred hhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC-----CCEEEEehhHH
Confidence 4789999999999 89999999999999999999864 27888888765
|
| >3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A | Back alignment and structure |
|---|
Probab=97.45 E-value=1.4e-05 Score=84.14 Aligned_cols=33 Identities=21% Similarity=0.307 Sum_probs=31.6
Q ss_pred ceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 006897 89 SVSFEARDSEILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 89 ~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
|+++.+.+|+.++|+||+|+|||||++.|++.+
T Consensus 166 D~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 166 DLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp HHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred eeeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 899999999999999999999999999998765
|
| >2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=97.42 E-value=1.2e-05 Score=84.37 Aligned_cols=51 Identities=20% Similarity=0.270 Sum_probs=42.4
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCcc
Q 006897 84 LHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQ 137 (627)
Q Consensus 84 ~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~ 137 (627)
+.+++++++.+.+|.+++|+|++|+|||||++.|+|.+.+.+ +++.+-+.+
T Consensus 43 ~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~---~~v~v~~~d 93 (341)
T 2p67_A 43 TQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREG---LKVAVIAVD 93 (341)
T ss_dssp HHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTT---CCEEEEEEC
T ss_pred HHHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcC---CeEEEEeec
Confidence 458899999999999999999999999999999999876543 566554443
|
| >2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* | Back alignment and structure |
|---|
Probab=97.36 E-value=0.0001 Score=70.25 Aligned_cols=39 Identities=33% Similarity=0.454 Sum_probs=30.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCC-----CCC---CccceEEECCcc
Q 006897 99 ILAVVGPSGTGKSSLLRIISGRVR-----DQD---FDPRSITVNCHQ 137 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl~~-----~~~---~~~G~i~i~g~~ 137 (627)
.++|+|+||||||||++.|+|... |+. ...|.+.++|++
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~ 53 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKT 53 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEE
Confidence 479999999999999999999853 211 124788888865
|
| >4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A | Back alignment and structure |
|---|
Probab=97.34 E-value=8.5e-05 Score=73.22 Aligned_cols=46 Identities=20% Similarity=0.349 Sum_probs=31.6
Q ss_pred eeeceEEEEe---CCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 86 ILKSVSFEAR---DSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 86 iL~~vsl~i~---~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
-|.++|+++. +|.+++|.|++||||||+++.|+..+.+ . +.+....
T Consensus 12 ~~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~---~~~~~~~ 60 (229)
T 4eaq_A 12 DLGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVK-D---YDVIMTR 60 (229)
T ss_dssp --------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTT-T---SCEEEEC
T ss_pred CccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc-C---CCceeec
Confidence 3778888877 9999999999999999999999988765 3 5554433
|
| >2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A* | Back alignment and structure |
|---|
Probab=97.29 E-value=6.9e-05 Score=70.42 Aligned_cols=39 Identities=15% Similarity=0.179 Sum_probs=31.2
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccc--eEEECCcc
Q 006897 95 RDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPR--SITVNCHQ 137 (627)
Q Consensus 95 ~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G--~i~i~g~~ 137 (627)
++|++++|+|++||||||+++.|++.+++. | .+.+++..
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~~----g~~~i~~d~~~ 43 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVCH----GIPCYTLDGDN 43 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHT----TCCEEEEEHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhhC----CCcEEEECChH
Confidence 479999999999999999999999987542 4 56666544
|
| >3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A | Back alignment and structure |
|---|
Probab=97.29 E-value=2.9e-05 Score=86.51 Aligned_cols=48 Identities=23% Similarity=0.365 Sum_probs=39.7
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCc
Q 006897 85 HILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCH 136 (627)
Q Consensus 85 ~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~ 136 (627)
.+++++++++ +|+.++|+||||+|||||+++|++.+.+. .|.+...|.
T Consensus 97 ~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~---~~~i~~~~~ 144 (543)
T 3m6a_A 97 LAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRK---FVRISLGGV 144 (543)
T ss_dssp HHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCE---EEEECCCC-
T ss_pred HHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCC---eEEEEeccc
Confidence 4678888888 89999999999999999999999988653 377766653
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 | Back alignment and structure |
|---|
Probab=97.26 E-value=0.00019 Score=77.66 Aligned_cols=70 Identities=20% Similarity=0.244 Sum_probs=38.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCC----C-----CCccceEEECCccC--CChhhhcccEEEEccCCCCCCCCCHHHHH
Q 006897 99 ILAVVGPSGTGKSSLLRIISGRVRD----Q-----DFDPRSITVNCHQI--KKPAQLRKICGFVAQEDNLLPLLTVKETL 167 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl~~~----~-----~~~~G~i~i~g~~~--~~~~~~r~~ig~v~Q~~~l~~~lTV~e~l 167 (627)
.++|+|+||+|||||++.|+|.... . ....|.+.++|+++ .+....++..++.+|....+..++..+++
T Consensus 182 kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~i 261 (439)
T 1mky_A 182 KVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSI 261 (439)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHHHHHH
Confidence 7999999999999999999998531 0 01238888888754 12222344445555554445444444444
Q ss_pred H
Q 006897 168 M 168 (627)
Q Consensus 168 ~ 168 (627)
.
T Consensus 262 ~ 262 (439)
T 1mky_A 262 E 262 (439)
T ss_dssp H
T ss_pred h
Confidence 4
|
| >2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.22 E-value=9.1e-05 Score=77.80 Aligned_cols=40 Identities=18% Similarity=0.352 Sum_probs=33.7
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCcc
Q 006897 95 RDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQ 137 (627)
Q Consensus 95 ~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~ 137 (627)
+++.+++|+|++|||||||++.|+|.+.+.+ |+|.+.+.+
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~~---~~v~V~~~d 111 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTERG---HKLSVLAVD 111 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHTT---CCEEEEECC
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhhcC---CeEEEEeec
Confidence 4688999999999999999999999877643 777776655
|
| >3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A* | Back alignment and structure |
|---|
Probab=97.16 E-value=0.00021 Score=69.00 Aligned_cols=30 Identities=37% Similarity=0.570 Sum_probs=25.0
Q ss_pred eceEEEEeCCeEEEEECCCCCcHHHHHHHHH
Q 006897 88 KSVSFEARDSEILAVVGPSGTGKSSLLRIIS 118 (627)
Q Consensus 88 ~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~ 118 (627)
++.++++.+| +++|+|||||||||++.+|.
T Consensus 15 ~~~~i~f~~~-~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 15 SDTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp SSEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred cceEEEeCCC-eEEEEcCCCCCHHHHHHHHH
Confidence 4455666665 99999999999999999985
|
| >2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.08 E-value=1.6e-05 Score=84.01 Aligned_cols=47 Identities=30% Similarity=0.314 Sum_probs=35.3
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRD 123 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~ 123 (627)
.+.++|++..|. .+.++++++++| +|+|++|+|||||++.|.|....
T Consensus 17 ~v~~~~l~~~~~---------------~k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~~ 63 (361)
T 2qag_A 17 YVGFANLPNQVH---------------RKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLY 63 (361)
T ss_dssp ----CCHHHHHH---------------THHHHHCCEECE------EECCCTTSCHHHHHHHHTTCCC-
T ss_pred eEEeccchHHhC---------------CeeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCCCC
Confidence 578888887762 345789999987 99999999999999999886443
|
| >1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A | Back alignment and structure |
|---|
Probab=97.05 E-value=0.00024 Score=66.95 Aligned_cols=40 Identities=30% Similarity=0.419 Sum_probs=29.8
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCcc
Q 006897 98 EILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQ 137 (627)
Q Consensus 98 e~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~ 137 (627)
.+++|+|+||||||||++.|.+.+++.+...|.+..++++
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~~ 46 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHD 46 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCCc
Confidence 5899999999999999999998765433234666665543
|
| >1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.02 E-value=0.00031 Score=67.42 Aligned_cols=21 Identities=24% Similarity=0.627 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q 006897 99 ILAVVGPSGTGKSSLLRIISG 119 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~G 119 (627)
+++|+|||||||||+.++|++
T Consensus 4 ~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999998
|
| >2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A | Back alignment and structure |
|---|
Probab=96.97 E-value=0.00025 Score=76.28 Aligned_cols=47 Identities=15% Similarity=0.245 Sum_probs=40.5
Q ss_pred eceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCccCC
Q 006897 88 KSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIK 139 (627)
Q Consensus 88 ~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~~~ 139 (627)
++++++ +|++++++|+|||||||++..|++.+.+.+ +.|.+.+.+..
T Consensus 91 ~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g---~~Vllvd~D~~ 137 (425)
T 2ffh_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKG---RRPLLVAADTQ 137 (425)
T ss_dssp CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTTT---CCEEEEECCSS
T ss_pred ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcC---CeEEEeecccc
Confidence 678887 899999999999999999999999988753 88888777653
|
| >1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.97 E-value=0.00031 Score=66.41 Aligned_cols=32 Identities=28% Similarity=0.456 Sum_probs=26.3
Q ss_pred ceEEEEeCCeEEEEECCCCCcHHHHHHHHHcC
Q 006897 89 SVSFEARDSEILAVVGPSGTGKSSLLRIISGR 120 (627)
Q Consensus 89 ~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl 120 (627)
++|++..+|..++|+|++||||||+.+.|+..
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 57788889999999999999999999999865
|
| >2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax} | Back alignment and structure |
|---|
Probab=96.93 E-value=0.00036 Score=67.08 Aligned_cols=28 Identities=32% Similarity=0.536 Sum_probs=25.5
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 006897 94 ARDSEILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 94 i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
..+|.+++|+||||||||||.+.|+..+
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 4689999999999999999999998765
|
| >1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A* | Back alignment and structure |
|---|
Probab=96.90 E-value=0.00018 Score=69.63 Aligned_cols=43 Identities=16% Similarity=0.250 Sum_probs=34.5
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccc--eEEECCcc
Q 006897 92 FEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPR--SITVNCHQ 137 (627)
Q Consensus 92 l~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G--~i~i~g~~ 137 (627)
..+++|.+++|+|++||||||+.+.|++.+.+. .| .+.+++..
T Consensus 20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~---~g~~~~~~~~d~ 64 (211)
T 1m7g_A 20 LRNQRGLTIWLTGLSASGKSTLAVELEHQLVRD---RRVHAYRLDGDN 64 (211)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHHHHHHH---HCCCEEEECHHH
T ss_pred ccCCCCCEEEEECCCCCCHHHHHHHHHHHhccc---cCCcEEEECChH
Confidence 346789999999999999999999999887643 25 67776544
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* | Back alignment and structure |
|---|
Probab=96.85 E-value=0.00083 Score=71.00 Aligned_cols=46 Identities=9% Similarity=0.157 Sum_probs=40.5
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeec
Q 006897 211 GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILS 260 (627)
Q Consensus 211 PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~ 260 (627)
|++|||+..+..+.+.|+++. .+.+||++||+++ +...||++++|+
T Consensus 314 p~~~LD~~~~~~l~~~l~~~~--~~~~vi~~th~~~--~~~~~d~~~~l~ 359 (371)
T 3auy_A 314 PTVYLDENRRAKLAEIFRKVK--SIPQMIIITHHRE--LEDVADVIINVK 359 (371)
T ss_dssp TTTTCCHHHHHHHHHHHHHCC--SCSEEEEEESCGG--GGGGCSEEEEEE
T ss_pred CCCcCCHHHHHHHHHHHHHhc--cCCeEEEEEChHH--HHhhCCEEEEEE
Confidence 899999999999999999874 2468999999986 578999999997
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* | Back alignment and structure |
|---|
Probab=96.85 E-value=0.00053 Score=72.53 Aligned_cols=31 Identities=26% Similarity=0.492 Sum_probs=27.5
Q ss_pred eeceEEEEeCCeEEEEECCCCCcHHHHHHHHH
Q 006897 87 LKSVSFEARDSEILAVVGPSGTGKSSLLRIIS 118 (627)
Q Consensus 87 L~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~ 118 (627)
+++..+++.+| +++|+|||||||||+|.+|.
T Consensus 16 ~~~~~i~f~~g-l~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 16 HVNSRIKFEKG-IVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp EEEEEEECCSE-EEEEEECTTSSHHHHHHHHH
T ss_pred ccceEEecCCC-eEEEECCCCCCHHHHHHHHH
Confidence 57788888786 99999999999999999985
|
| >2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A | Back alignment and structure |
|---|
Probab=96.84 E-value=0.00053 Score=63.82 Aligned_cols=27 Identities=33% Similarity=0.540 Sum_probs=23.4
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 006897 95 RDSEILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 95 ~~Ge~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
++|..++|+|++|+|||||++.|+|..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 468899999999999999999999864
|
| >3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A* | Back alignment and structure |
|---|
Probab=96.82 E-value=0.00042 Score=72.87 Aligned_cols=34 Identities=35% Similarity=0.424 Sum_probs=27.5
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcC
Q 006897 84 LHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGR 120 (627)
Q Consensus 84 ~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl 120 (627)
..+|++++++++ .++|+|++|||||||++.|+|.
T Consensus 24 ~~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~ 57 (360)
T 3t34_A 24 SSALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGK 57 (360)
T ss_dssp SCCC----CCCC---EEEEECBTTSSHHHHHHHHHTS
T ss_pred ccccccccccCC---EEEEECCCCCcHHHHHHHHhCC
Confidence 358999999998 8999999999999999999994
|
| >2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=96.81 E-value=0.00047 Score=65.97 Aligned_cols=21 Identities=24% Similarity=0.490 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q 006897 99 ILAVVGPSGTGKSSLLRIISG 119 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~G 119 (627)
+++|+|+|||||||+.+.|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999998
|
| >1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=96.79 E-value=5.9e-05 Score=78.71 Aligned_cols=40 Identities=23% Similarity=0.419 Sum_probs=36.2
Q ss_pred cceeeceEEEEeCCeE--EEEECCCCCcHHHHHHHHHcCCCC
Q 006897 84 LHILKSVSFEARDSEI--LAVVGPSGTGKSSLLRIISGRVRD 123 (627)
Q Consensus 84 ~~iL~~vsl~i~~Ge~--~aIiGpnGsGKSTLl~~L~Gl~~~ 123 (627)
..+++.++..++.|++ +.+.||+|+||||+++++++.+.+
T Consensus 31 ~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~ 72 (340)
T 1sxj_C 31 NEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYG 72 (340)
T ss_dssp HHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcC
Confidence 4588899999999999 999999999999999999998754
|
| >3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=96.77 E-value=0.00055 Score=68.93 Aligned_cols=49 Identities=16% Similarity=0.077 Sum_probs=37.4
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeec
Q 006897 211 GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILS 260 (627)
Q Consensus 211 PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~ 260 (627)
|+|+++.....++.+.+.+..++.+.+..+..|..+ ++.+.++++.-.-
T Consensus 144 ~~Sa~~g~gi~~l~~~i~~~~~~~~~~~~~~~~~~~-~~e~~~~~l~~~~ 192 (271)
T 3k53_A 144 PTNAKKGEGVEELKRMIALMAEGKVTTNPIIPRYDE-DIEREIKHISELL 192 (271)
T ss_dssp ECBGGGTBTHHHHHHHHHHHHHTCCCCCCCCCCCCH-HHHHHHHHHHHHH
T ss_pred EEEeCCCCCHHHHHHHHHHHHhccccCCCCCcCCCH-HHHHHHHHHHHHH
Confidence 889999999999999998887665555566777766 5788888765443
|
| >2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=96.77 E-value=0.00047 Score=65.07 Aligned_cols=30 Identities=13% Similarity=0.347 Sum_probs=26.8
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcCCCC
Q 006897 94 ARDSEILAVVGPSGTGKSSLLRIISGRVRD 123 (627)
Q Consensus 94 i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~ 123 (627)
..+|.++.|+|++||||||+.+.|++.+.+
T Consensus 10 ~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~ 39 (186)
T 2yvu_A 10 IEKGIVVWLTGLPGSGKTTIATRLADLLQK 39 (186)
T ss_dssp CSCCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 357899999999999999999999988764
|
| >1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* | Back alignment and structure |
|---|
Probab=96.73 E-value=0.0006 Score=64.49 Aligned_cols=35 Identities=23% Similarity=0.455 Sum_probs=20.8
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcC
Q 006897 85 HILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGR 120 (627)
Q Consensus 85 ~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl 120 (627)
.+++++++..++. .++++|++|+|||||++.+.+-
T Consensus 12 ~~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 12 DVLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp ------------C-EEEEEESTTSSHHHHHHHHHHS
T ss_pred HHHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999998888 5689999999999999999873
|
| >1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F | Back alignment and structure |
|---|
Probab=96.69 E-value=0.00021 Score=73.35 Aligned_cols=47 Identities=15% Similarity=0.206 Sum_probs=38.5
Q ss_pred ec-eEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCccC
Q 006897 88 KS-VSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQI 138 (627)
Q Consensus 88 ~~-vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~~ 138 (627)
++ ++++.+ |++++++|+||+||||++..|++.+.+.+ +++.+.+.+.
T Consensus 89 ~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~g---~~v~l~~~D~ 136 (297)
T 1j8m_F 89 EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKKG---FKVGLVGADV 136 (297)
T ss_dssp CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHTT---CCEEEEECCC
T ss_pred ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHCC---CeEEEEecCC
Confidence 45 777766 99999999999999999999999887543 7777766553
|
| >2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A* | Back alignment and structure |
|---|
Probab=96.69 E-value=0.00018 Score=75.20 Aligned_cols=38 Identities=21% Similarity=0.387 Sum_probs=34.4
Q ss_pred ceeeceEEEEeCCeE--EEEECCCCCcHHHHHHHHHcCCC
Q 006897 85 HILKSVSFEARDSEI--LAVVGPSGTGKSSLLRIISGRVR 122 (627)
Q Consensus 85 ~iL~~vsl~i~~Ge~--~aIiGpnGsGKSTLl~~L~Gl~~ 122 (627)
.+++++++.+++|++ ++|+|++||||||+.++|++.+.
T Consensus 10 ~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp HHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 478899999999999 99999999999999999998653
|
| >1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X | Back alignment and structure |
|---|
Probab=96.60 E-value=0.00072 Score=69.38 Aligned_cols=26 Identities=35% Similarity=0.546 Sum_probs=22.9
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 006897 96 DSEILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 96 ~Ge~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
++..++|+|++|+|||||++.|.|..
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~ 32 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQK 32 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCS
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCC
Confidence 34489999999999999999999863
|
| >2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=96.60 E-value=0.0005 Score=68.60 Aligned_cols=46 Identities=15% Similarity=0.343 Sum_probs=35.5
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCcc
Q 006897 86 ILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQ 137 (627)
Q Consensus 86 iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~ 137 (627)
++++.+ ..+++.++.|+|++||||||+.+.|+..+.. +.+.+++..
T Consensus 22 ~~~~~~-~~~~~~~i~l~G~~GsGKSTla~~L~~~l~~-----~~~~~~~D~ 67 (253)
T 2p5t_B 22 LTRGKK-SSKQPIAILLGGQSGAGKTTIHRIKQKEFQG-----NIVIIDGDS 67 (253)
T ss_dssp HHTTCC-CCSSCEEEEEESCGGGTTHHHHHHHHHHTTT-----CCEEECGGG
T ss_pred HHccCC-cccCCeEEEEECCCCCCHHHHHHHHHHhcCC-----CcEEEecHH
Confidence 444444 5678899999999999999999999987632 556677654
|
| >3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.55 E-value=0.0011 Score=62.12 Aligned_cols=26 Identities=19% Similarity=0.417 Sum_probs=22.8
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcC
Q 006897 95 RDSEILAVVGPSGTGKSSLLRIISGR 120 (627)
Q Consensus 95 ~~Ge~~aIiGpnGsGKSTLl~~L~Gl 120 (627)
.+|.+++|+|++||||||+.+.|+..
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~ 27 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQE 27 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 46889999999999999999999853
|
| >1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=96.54 E-value=0.00065 Score=73.26 Aligned_cols=47 Identities=6% Similarity=0.068 Sum_probs=41.4
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeec
Q 006897 211 GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILS 260 (627)
Q Consensus 211 PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~ 260 (627)
|+++||+..+..+.+.|+++.+ .|.++|++||+.. ....||+++.+.
T Consensus 364 p~~~LD~~~~~~l~~~l~~~~~-~~~~~ii~th~~~--~~~~~d~~~~~~ 410 (430)
T 1w1w_A 364 VDAALDITNVQRIAAYIRRHRN-PDLQFIVISLKNT--MFEKSDALVGVY 410 (430)
T ss_dssp TTTTCCHHHHHHHHHHHHHHCB-TTBEEEEECSCHH--HHTTCSEEEEEE
T ss_pred CcccCCHHHHHHHHHHHHHHhc-CCCEEEEEECCHH--HHHhCCEEEEEE
Confidence 8999999999999999999854 4789999999964 577899999986
|
| >2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A | Back alignment and structure |
|---|
Probab=96.53 E-value=0.0014 Score=69.19 Aligned_cols=42 Identities=21% Similarity=0.387 Sum_probs=29.0
Q ss_pred CCeE-EEEECCCCCcHHHHHHHHHcCCCCC--------CCccceEEECCcc
Q 006897 96 DSEI-LAVVGPSGTGKSSLLRIISGRVRDQ--------DFDPRSITVNCHQ 137 (627)
Q Consensus 96 ~Ge~-~aIiGpnGsGKSTLl~~L~Gl~~~~--------~~~~G~i~i~g~~ 137 (627)
+|-. ++|+|++|||||||++.|+|..... +...|.+.++|.+
T Consensus 177 ~~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~ 227 (364)
T 2qtf_A 177 NNIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRK 227 (364)
T ss_dssp --CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEE
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEE
Confidence 3444 9999999999999999999986421 0234778887754
|
| >3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=96.53 E-value=0.00094 Score=63.81 Aligned_cols=25 Identities=36% Similarity=0.477 Sum_probs=22.6
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCC
Q 006897 97 SEILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 97 Ge~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
..+++|+|++||||||+.+.|++.+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998764
|
| >2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A* | Back alignment and structure |
|---|
Probab=96.53 E-value=0.0012 Score=60.61 Aligned_cols=24 Identities=25% Similarity=0.540 Sum_probs=21.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGRVR 122 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl~~ 122 (627)
.++|+|++|+|||||++.++|...
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~~ 28 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGENV 28 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCe
Confidence 589999999999999999998653
|
| >1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* | Back alignment and structure |
|---|
Probab=96.51 E-value=0.00026 Score=67.57 Aligned_cols=36 Identities=19% Similarity=0.439 Sum_probs=31.5
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcC
Q 006897 84 LHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGR 120 (627)
Q Consensus 84 ~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl 120 (627)
..+++++|+..++++ ++|+|++|+|||||++.+.+-
T Consensus 13 ~~~l~~~~~~~~~~k-i~lvG~~~vGKSsLi~~l~~~ 48 (198)
T 1f6b_A 13 SSVLQFLGLYKKTGK-LVFLGLDNAGKTTLLHMLKDD 48 (198)
T ss_dssp CHHHHHHTCTTCCEE-EEEEEETTSSHHHHHHHHSCC
T ss_pred HHHHHHhhccCCCcE-EEEECCCCCCHHHHHHHHhcC
Confidence 358999999988885 689999999999999999863
|
| >1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=96.47 E-value=0.0011 Score=65.87 Aligned_cols=45 Identities=24% Similarity=0.418 Sum_probs=30.1
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCcc
Q 006897 86 ILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQ 137 (627)
Q Consensus 86 iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~ 137 (627)
.++++++..++| +.|.||+|+|||||+++|++.... --+.+++.+
T Consensus 36 ~~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~~-----~~~~i~~~~ 80 (257)
T 1lv7_A 36 RFQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAKV-----PFFTISGSD 80 (257)
T ss_dssp GC-----CCCCE--EEEECCTTSCHHHHHHHHHHHHTC-----CEEEECSCS
T ss_pred HHHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcCC-----CEEEEeHHH
Confidence 455666666666 889999999999999999987532 235666544
|
| >1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.37 E-value=0.0016 Score=64.03 Aligned_cols=29 Identities=28% Similarity=0.520 Sum_probs=24.5
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 006897 93 EARDSEILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 93 ~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
+-.+|.+++|+|++||||||+.+.|++.+
T Consensus 12 ~~~~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 12 DKMKTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp --CCCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred cccCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 35678999999999999999999999743
|
| >3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A* | Back alignment and structure |
|---|
Probab=96.35 E-value=0.0018 Score=59.72 Aligned_cols=23 Identities=22% Similarity=0.329 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
+++|+|++||||||+.+.|+..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998654
|
| >1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A* | Back alignment and structure |
|---|
Probab=96.34 E-value=0.002 Score=59.93 Aligned_cols=26 Identities=23% Similarity=0.477 Sum_probs=23.1
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCC
Q 006897 97 SEILAVVGPSGTGKSSLLRIISGRVR 122 (627)
Q Consensus 97 Ge~~aIiGpnGsGKSTLl~~L~Gl~~ 122 (627)
|.++.|+|++||||||+.+.|+..+.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 56899999999999999999997653
|
| >1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A | Back alignment and structure |
|---|
Probab=96.23 E-value=0.007 Score=63.51 Aligned_cols=35 Identities=20% Similarity=0.243 Sum_probs=28.8
Q ss_pred eeeceE--EEEeCCeEEEEECCCCCcHHHHHHHHHcC
Q 006897 86 ILKSVS--FEARDSEILAVVGPSGTGKSSLLRIISGR 120 (627)
Q Consensus 86 iL~~vs--l~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl 120 (627)
-||.+- .-+++|+++.|.||+|+|||||...++..
T Consensus 50 ~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~ 86 (356)
T 1u94_A 50 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAA 86 (356)
T ss_dssp HHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 466653 35899999999999999999999888754
|
| >2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* | Back alignment and structure |
|---|
Probab=96.23 E-value=0.002 Score=60.30 Aligned_cols=23 Identities=35% Similarity=0.606 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
.++|+|++|+|||||++.++|..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~ 26 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTK 26 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999999864
|
| >2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=96.22 E-value=0.0023 Score=59.66 Aligned_cols=22 Identities=27% Similarity=0.652 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGR 120 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl 120 (627)
.++|+|++|+|||||++.|+|.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999985
|
| >2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.19 E-value=0.002 Score=68.43 Aligned_cols=28 Identities=21% Similarity=0.414 Sum_probs=25.0
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHHcC
Q 006897 93 EARDSEILAVVGPSGTGKSSLLRIISGR 120 (627)
Q Consensus 93 ~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl 120 (627)
.+..|..++|+|+||+|||||++.|+|.
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~ 45 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNS 45 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC-
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCC
Confidence 5567889999999999999999999987
|
| >3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A* | Back alignment and structure |
|---|
Probab=96.16 E-value=0.0025 Score=62.82 Aligned_cols=26 Identities=46% Similarity=0.640 Sum_probs=22.0
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 006897 96 DSEILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 96 ~Ge~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
..-+++|.||+||||||+.+.|+..+
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34589999999999999999998543
|
| >1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A | Back alignment and structure |
|---|
Probab=96.15 E-value=0.0027 Score=59.49 Aligned_cols=26 Identities=15% Similarity=0.419 Sum_probs=22.3
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 006897 96 DSEILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 96 ~Ge~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
+|.++.|.|++||||||+.+.|+-.+
T Consensus 2 ~~~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 2 KNKVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp -CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 36789999999999999999998644
|
| >1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=96.09 E-value=0.002 Score=60.21 Aligned_cols=26 Identities=23% Similarity=0.340 Sum_probs=22.7
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCCCC
Q 006897 98 EILAVVGPSGTGKSSLLRIISGRVRD 123 (627)
Q Consensus 98 e~~aIiGpnGsGKSTLl~~L~Gl~~~ 123 (627)
.+++|+|++|||||||++.|++.++.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~ 30 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVR 30 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHh
Confidence 37899999999999999999887653
|
| >4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=96.08 E-value=0.00064 Score=70.83 Aligned_cols=154 Identities=11% Similarity=0.080 Sum_probs=78.4
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCccCCChhhhccc-EE---EEccCCCCCC
Q 006897 84 LHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKKPAQLRKI-CG---FVAQEDNLLP 159 (627)
Q Consensus 84 ~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~~~~~~~~r~~-ig---~v~Q~~~l~~ 159 (627)
..-|+.+..-+++|+++.|.|++|+|||||+.-++......+ +.+.+..-+. +..++..+ ++ -++.+...-.
T Consensus 33 ~~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g---~~Vl~fSlEm-s~~ql~~Rlls~~~~v~~~~l~~g 108 (338)
T 4a1f_A 33 FVQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALNDD---RGVAVFSLEM-SAEQLALRALSDLTSINMHDLESG 108 (338)
T ss_dssp CHHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTT---CEEEEEESSS-CHHHHHHHHHHHHHCCCHHHHHHT
T ss_pred ChHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcC---CeEEEEeCCC-CHHHHHHHHHHHhhCCCHHHHhcC
Confidence 346888877899999999999999999999988875433211 4444433221 22222111 11 1111110011
Q ss_pred CCCHHHHHHHH--H----H--hcC---CCCCHHHHHHHHHHHHHHc-CCccc----cCCcCCccccCCCCCCCHHHHHHH
Q 006897 160 LLTVKETLMFS--A----N--FRL---KGMSHKEKEDRVESLMDEL-GLTHV----AGSFVGDEENRGISGLDSTSALQV 223 (627)
Q Consensus 160 ~lTV~e~l~~~--~----~--~~~---~~~~~~~~~~~v~~~l~~l-gL~~~----~~~~~gGe~qrPtsgLD~~~~~~i 223 (627)
.++-.|--.+. . . +.. +..+-.+...++..+.+.. |+.-+ .....++.. .+. ......++
T Consensus 109 ~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~si~~i~~~ir~l~~~~gg~~lIVIDyLqlm~~~~~-~~~---r~~ei~~i 184 (338)
T 4a1f_A 109 RLDDDQWENLAKCFDHLSQKKLFFYDKSYVRIEQIRLQLRKLKSQHKELGIAFIDYLQLMSGSKA-TKE---RHEQIAEI 184 (338)
T ss_dssp CCCHHHHHHHHHHHHHHHHSCEEEECCTTCCHHHHHHHHHHHHHHCTTEEEEEEEEEECCCTHHH-HHH---CCCCHHHH
T ss_pred CCCHHHHHHHHHHHHHHhcCCeEEeCCCCCcHHHHHHHHHHHHHhcCCCCEEEEechHHhcCCCC-CCC---hHHHHHHH
Confidence 23332221111 0 0 110 1123344555555555554 43211 111111110 000 01125688
Q ss_pred HHHHHHHHHcCCCEEEEEccCc
Q 006897 224 IELLASMAKAKQRTVVLSIHQP 245 (627)
Q Consensus 224 ~~~L~~l~~~~g~Tii~~tH~~ 245 (627)
.+.|+.++++.+.+||+++|--
T Consensus 185 sr~LK~lAkel~vpVi~lsQl~ 206 (338)
T 4a1f_A 185 SRELKTLARELEIPIIALVQLN 206 (338)
T ss_dssp HHHHHHHHHHHTSCEEEEEECC
T ss_pred HHHHHHHHHHcCCeEEEEEecC
Confidence 8999999999999999999943
|
| >2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus} | Back alignment and structure |
|---|
Probab=96.03 E-value=0.0027 Score=59.67 Aligned_cols=26 Identities=23% Similarity=0.465 Sum_probs=23.0
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcC
Q 006897 95 RDSEILAVVGPSGTGKSSLLRIISGR 120 (627)
Q Consensus 95 ~~Ge~~aIiGpnGsGKSTLl~~L~Gl 120 (627)
.++.++.|+|++||||||+.+.|+..
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~ 28 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATG 28 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 35789999999999999999999854
|
| >1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A | Back alignment and structure |
|---|
Probab=96.00 E-value=0.0034 Score=60.64 Aligned_cols=24 Identities=29% Similarity=0.421 Sum_probs=21.9
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHc
Q 006897 96 DSEILAVVGPSGTGKSSLLRIISG 119 (627)
Q Consensus 96 ~Ge~~aIiGpnGsGKSTLl~~L~G 119 (627)
.+-+++|.|++||||||+.+.|+.
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999987
|
| >2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A | Back alignment and structure |
|---|
Probab=95.99 E-value=0.0032 Score=62.76 Aligned_cols=24 Identities=21% Similarity=0.386 Sum_probs=21.4
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 006897 98 EILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 98 e~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
.+++|+||||||||||.+.|++.+
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhcC
Confidence 378999999999999999998754
|
| >1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A | Back alignment and structure |
|---|
Probab=95.97 E-value=0.0033 Score=59.72 Aligned_cols=22 Identities=45% Similarity=0.771 Sum_probs=19.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGR 120 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl 120 (627)
.+.|+||||||||||++.|...
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 3679999999999999998754
|
| >3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A | Back alignment and structure |
|---|
Probab=95.96 E-value=0.0036 Score=57.46 Aligned_cols=19 Identities=26% Similarity=0.733 Sum_probs=18.3
Q ss_pred EEEEECCCCCcHHHHHHHH
Q 006897 99 ILAVVGPSGTGKSSLLRII 117 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L 117 (627)
+++|.||+||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6899999999999999999
|
| >3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=95.92 E-value=0.004 Score=58.29 Aligned_cols=26 Identities=19% Similarity=0.286 Sum_probs=22.2
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 006897 96 DSEILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 96 ~Ge~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
.+..+.|+|++||||||+.+.|+..+
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 36689999999999999999998543
|
| >2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A* | Back alignment and structure |
|---|
Probab=95.88 E-value=0.0041 Score=58.92 Aligned_cols=23 Identities=35% Similarity=0.576 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
+++|.|++||||||+.+.|+..+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 68999999999999999999754
|
| >1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B* | Back alignment and structure |
|---|
Probab=95.86 E-value=0.0042 Score=63.14 Aligned_cols=36 Identities=22% Similarity=0.354 Sum_probs=28.3
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 95 RDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 95 ~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
..|.++.|.|||||||||+.+.|+..++. +.+.+++
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~~~-----~~~~Is~ 66 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEETQG-----NVIVIDN 66 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHTTT-----CCEEECT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCC-----CeEEEec
Confidence 45789999999999999999999865421 5566654
|
| >3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A | Back alignment and structure |
|---|
Probab=95.83 E-value=0.004 Score=58.15 Aligned_cols=26 Identities=19% Similarity=0.327 Sum_probs=22.6
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcC
Q 006897 95 RDSEILAVVGPSGTGKSSLLRIISGR 120 (627)
Q Consensus 95 ~~Ge~~aIiGpnGsGKSTLl~~L~Gl 120 (627)
.++..+.|+|++||||||+.+.|+-.
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~~ 34 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELASK 34 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHHH
Confidence 35678999999999999999999843
|
| >2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A* | Back alignment and structure |
|---|
Probab=95.82 E-value=0.0048 Score=58.59 Aligned_cols=26 Identities=15% Similarity=0.247 Sum_probs=23.9
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 006897 96 DSEILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 96 ~Ge~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
+|.+++|.|+.||||||+.+.|+..+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999999765
|
| >2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=95.79 E-value=0.0053 Score=58.53 Aligned_cols=27 Identities=26% Similarity=0.454 Sum_probs=23.8
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCCC
Q 006897 96 DSEILAVVGPSGTGKSSLLRIISGRVR 122 (627)
Q Consensus 96 ~Ge~~aIiGpnGsGKSTLl~~L~Gl~~ 122 (627)
+|.+++|.|++||||||+.+.|+..+.
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~ 29 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIE 29 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 477899999999999999999987554
|
| >3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.77 E-value=0.0045 Score=60.75 Aligned_cols=25 Identities=36% Similarity=0.418 Sum_probs=22.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGRVRD 123 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl~~~ 123 (627)
.++|+|++|+|||||++.|+|....
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~~ 55 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKVF 55 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCCS
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcC
Confidence 4789999999999999999997654
|
| >1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=95.74 E-value=0.0048 Score=58.45 Aligned_cols=24 Identities=25% Similarity=0.526 Sum_probs=21.6
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcC
Q 006897 97 SEILAVVGPSGTGKSSLLRIISGR 120 (627)
Q Consensus 97 Ge~~aIiGpnGsGKSTLl~~L~Gl 120 (627)
..+++|+|++||||||+.+.|+..
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC
Confidence 357999999999999999999964
|
| >1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=95.72 E-value=0.0049 Score=57.27 Aligned_cols=23 Identities=30% Similarity=0.541 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
.++|+|++||||||+.+.|+..+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 58899999999999999998654
|
| >1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=95.70 E-value=0.0057 Score=56.65 Aligned_cols=22 Identities=32% Similarity=0.534 Sum_probs=20.3
Q ss_pred eEEEEECCCCCcHHHHHHHHHc
Q 006897 98 EILAVVGPSGTGKSSLLRIISG 119 (627)
Q Consensus 98 e~~aIiGpnGsGKSTLl~~L~G 119 (627)
.++.|.|++||||||+.+.|+.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4789999999999999999986
|
| >2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus} | Back alignment and structure |
|---|
Probab=95.68 E-value=0.0095 Score=64.40 Aligned_cols=154 Identities=12% Similarity=0.067 Sum_probs=77.1
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCccCCChhhhccc-E---EEEccCCCCCCC
Q 006897 85 HILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKKPAQLRKI-C---GFVAQEDNLLPL 160 (627)
Q Consensus 85 ~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~~~~~~~~r~~-i---g~v~Q~~~l~~~ 160 (627)
.-|+.+..-+++|+++.|.|++|+|||||+.-++....... ....+.+..+. +..++.++ + +-++.+...-..
T Consensus 188 ~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~-g~~vl~~slE~--~~~~l~~R~~~~~~~i~~~~l~~g~ 264 (444)
T 2q6t_A 188 KELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALKE-GVGVGIYSLEM--PAAQLTLRMMCSEARIDMNRVRLGQ 264 (444)
T ss_dssp HHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTT-CCCEEEEESSS--CHHHHHHHHHHHHTTCCTTTCCGGG
T ss_pred HhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhC-CCeEEEEECCC--CHHHHHHHHHHHHcCCCHHHHhCCC
Confidence 45788877799999999999999999999988876443211 00223333321 22222211 1 111111111112
Q ss_pred CCHHHH--HHHHHH------hcC---CCCCHHHHHHHHHHHHHHcCCccc-cCCc---CCcc-ccCCCCCCCHHHHHHHH
Q 006897 161 LTVKET--LMFSAN------FRL---KGMSHKEKEDRVESLMDELGLTHV-AGSF---VGDE-ENRGISGLDSTSALQVI 224 (627)
Q Consensus 161 lTV~e~--l~~~~~------~~~---~~~~~~~~~~~v~~~l~~lgL~~~-~~~~---~gGe-~qrPtsgLD~~~~~~i~ 224 (627)
++-.|- +.-+.. +.. +..+..+...++.++.+.-+++-+ .|.+ .+.. .++ +.-+.....++.
T Consensus 265 l~~~~~~~~~~a~~~l~~~~l~i~d~~~~s~~~l~~~~~~l~~~~~~~lIvID~l~~~~~~~~~~~--~~~r~~~i~~i~ 342 (444)
T 2q6t_A 265 LTDRDFSRLVDVASRLSEAPIYIDDTPDLTLMEVRARARRLVSQNQVGLIIIDYLQLMSGPGSGKS--GENRQQEIAAIS 342 (444)
T ss_dssp CCHHHHHHHHHHHHHHHTSCEEEECCTTCBHHHHHHHHHHHHHHSCCCEEEEECGGGCBCC---------CHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEcChhhcCCCcCCCC--CCCHHHHHHHHH
Confidence 333221 111110 000 112334455556666655554321 1211 1110 000 011123446888
Q ss_pred HHHHHHHHcCCCEEEEEcc
Q 006897 225 ELLASMAKAKQRTVVLSIH 243 (627)
Q Consensus 225 ~~L~~l~~~~g~Tii~~tH 243 (627)
+.|+.++++.+.+||+++|
T Consensus 343 ~~Lk~lAke~~v~vi~lsq 361 (444)
T 2q6t_A 343 RGLKALARELGIPIIALSQ 361 (444)
T ss_dssp HHHHHHHHHHTSCEEEEEE
T ss_pred HHHHHHHHHhCCeEEEEec
Confidence 9999999999999999988
|
| >2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A* | Back alignment and structure |
|---|
Probab=95.68 E-value=0.0054 Score=58.62 Aligned_cols=27 Identities=15% Similarity=0.353 Sum_probs=23.8
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 006897 95 RDSEILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 95 ~~Ge~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
.+|.+++|.|++||||||+.+.|+-.+
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 467899999999999999999998543
|
| >3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A* | Back alignment and structure |
|---|
Probab=95.66 E-value=0.021 Score=70.84 Aligned_cols=30 Identities=20% Similarity=0.370 Sum_probs=26.9
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHHcCCC
Q 006897 93 EARDSEILAVVGPSGTGKSSLLRIISGRVR 122 (627)
Q Consensus 93 ~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~ 122 (627)
-+++|+++.|.||+|+|||||+..++....
T Consensus 728 Gl~~G~lVlI~G~PG~GKTtLal~lA~~aa 757 (1706)
T 3cmw_A 728 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQ 757 (1706)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CcCCCceEEEECCCCCCcHHHHHHHHHHHH
Confidence 499999999999999999999999976543
|
| >2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A | Back alignment and structure |
|---|
Probab=95.63 E-value=0.0053 Score=57.81 Aligned_cols=26 Identities=31% Similarity=0.539 Sum_probs=23.0
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcC
Q 006897 95 RDSEILAVVGPSGTGKSSLLRIISGR 120 (627)
Q Consensus 95 ~~Ge~~aIiGpnGsGKSTLl~~L~Gl 120 (627)
.++.+++|+|++||||||+.+.|+..
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~ 32 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQK 32 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 36779999999999999999999854
|
| >1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A* | Back alignment and structure |
|---|
Probab=95.61 E-value=0.0026 Score=60.93 Aligned_cols=24 Identities=38% Similarity=0.732 Sum_probs=21.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGRVR 122 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl~~ 122 (627)
+++|.|++||||||+++.|+..+.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999987764
|
| >3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=95.56 E-value=0.0058 Score=62.38 Aligned_cols=41 Identities=24% Similarity=0.410 Sum_probs=32.3
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCcc
Q 006897 92 FEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQ 137 (627)
Q Consensus 92 l~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~ 137 (627)
+.+.++..+.|.||+|+|||||+++|++.... +-+.+++.+
T Consensus 44 ~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~-----~~i~v~~~~ 84 (301)
T 3cf0_A 44 FGMTPSKGVLFYGPPGCGKTLLAKAIANECQA-----NFISIKGPE 84 (301)
T ss_dssp HCCCCCSEEEEECSSSSSHHHHHHHHHHHTTC-----EEEEECHHH
T ss_pred cCCCCCceEEEECCCCcCHHHHHHHHHHHhCC-----CEEEEEhHH
Confidence 34678899999999999999999999986531 556666543
|
| >1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=95.56 E-value=0.0071 Score=56.69 Aligned_cols=25 Identities=24% Similarity=0.388 Sum_probs=21.4
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcC
Q 006897 96 DSEILAVVGPSGTGKSSLLRIISGR 120 (627)
Q Consensus 96 ~Ge~~aIiGpnGsGKSTLl~~L~Gl 120 (627)
++.+++|.|++||||||+.+.|+-.
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~~L~~~ 26 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCARIVEK 26 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHH
Confidence 3568999999999999999999743
|
| >1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A* | Back alignment and structure |
|---|
Probab=95.53 E-value=0.0063 Score=58.22 Aligned_cols=28 Identities=25% Similarity=0.386 Sum_probs=24.0
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 006897 94 ARDSEILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 94 i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
.++|.+++|.|++||||||+.+.|+-.+
T Consensus 6 ~~~~~~I~l~G~~GsGKsT~~~~L~~~l 33 (215)
T 1nn5_A 6 ARRGALIVLEGVDRAGKSTQSRKLVEAL 33 (215)
T ss_dssp -CCCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3568899999999999999999998544
|
| >3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A | Back alignment and structure |
|---|
Probab=95.51 E-value=0.0037 Score=67.20 Aligned_cols=39 Identities=15% Similarity=0.215 Sum_probs=32.0
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCcc
Q 006897 96 DSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQ 137 (627)
Q Consensus 96 ~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~ 137 (627)
++.+++++||+|+||||++..|++.+.+.+ +.|.+-+.+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G---~kVllv~~D 134 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRG---YKVGLVAAD 134 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTT---CCEEEEEEC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcC---CeEEEEecC
Confidence 689999999999999999999998887643 667665444
|
| >1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=95.44 E-value=0.0068 Score=56.74 Aligned_cols=23 Identities=35% Similarity=0.459 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
++.|.|++||||||+.+.|+-.+
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l 25 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998654
|
| >3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=95.38 E-value=0.0045 Score=66.99 Aligned_cols=35 Identities=9% Similarity=0.204 Sum_probs=29.9
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHc
Q 006897 85 HILKSVSFEARDSEILAVVGPSGTGKSSLLRIISG 119 (627)
Q Consensus 85 ~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~G 119 (627)
.-|+.+..-+++|+++.|.|++|+|||||+.-++.
T Consensus 185 ~~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~ 219 (444)
T 3bgw_A 185 TELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAK 219 (444)
T ss_dssp HHHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHH
T ss_pred HHHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHH
Confidence 45777766799999999999999999999877764
|
| >1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2 | Back alignment and structure |
|---|
Probab=95.34 E-value=0.012 Score=60.36 Aligned_cols=36 Identities=25% Similarity=0.226 Sum_probs=32.0
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcC
Q 006897 84 LHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGR 120 (627)
Q Consensus 84 ~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl 120 (627)
...+++..+.+ .|.-++|+|+||+|||||...|.++
T Consensus 132 ~~~~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~~ 167 (314)
T 1ko7_A 132 TTSLHGVLVDV-YGVGVLITGDSGIGKSETALELIKR 167 (314)
T ss_dssp EEEEESEEEEE-TTEEEEEEESTTSSHHHHHHHHHHT
T ss_pred ceeeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHhc
Confidence 45789988888 8899999999999999999999864
|
| >3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A* | Back alignment and structure |
|---|
Probab=95.30 E-value=0.0081 Score=57.08 Aligned_cols=23 Identities=39% Similarity=0.696 Sum_probs=21.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
+++|.|++||||||+.+.|+..+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 79999999999999999998754
|
| >2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.29 E-value=0.0068 Score=57.18 Aligned_cols=27 Identities=22% Similarity=0.497 Sum_probs=23.5
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 006897 95 RDSEILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 95 ~~Ge~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
+++.+++|.|++||||||+.+.|+..+
T Consensus 10 ~~~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 10 RKCKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp HHSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 457799999999999999999998543
|
| >2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=95.28 E-value=0.0065 Score=56.57 Aligned_cols=26 Identities=31% Similarity=0.519 Sum_probs=18.3
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 006897 96 DSEILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 96 ~Ge~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
++.++.|.|++||||||+.+.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 46789999999999999999998543
|
| >1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A* | Back alignment and structure |
|---|
Probab=95.22 E-value=0.011 Score=57.24 Aligned_cols=26 Identities=27% Similarity=0.534 Sum_probs=22.8
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 006897 96 DSEILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 96 ~Ge~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
+|-++.|+|+.||||||+.+.|+..+
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 56789999999999999999998543
|
| >2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.18 E-value=0.0089 Score=55.94 Aligned_cols=24 Identities=29% Similarity=0.628 Sum_probs=21.6
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 006897 98 EILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 98 e~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
=.++|+|++|+|||||++.+.+..
T Consensus 49 ~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 378999999999999999999864
|
| >2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E* | Back alignment and structure |
|---|
Probab=95.15 E-value=0.004 Score=67.85 Aligned_cols=34 Identities=29% Similarity=0.580 Sum_probs=29.8
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 006897 86 ILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 86 iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
.++++++.+++| +.|+||+|+|||||+++|++..
T Consensus 40 ~~~~~g~~~p~g--vLL~GppGtGKT~Laraia~~~ 73 (476)
T 2ce7_A 40 KFNRIGARMPKG--ILLVGPPGTGKTLLARAVAGEA 73 (476)
T ss_dssp HHHTTTCCCCSE--EEEECCTTSSHHHHHHHHHHHH
T ss_pred HHhhcCCCCCCe--EEEECCCCCCHHHHHHHHHHHc
Confidence 567788888888 7899999999999999999864
|
| >4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A | Back alignment and structure |
|---|
Probab=95.12 E-value=0.0079 Score=63.79 Aligned_cols=37 Identities=16% Similarity=0.171 Sum_probs=29.2
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 96 DSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 96 ~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
.+.-++|+||||||||||++.|++.....+ +.|.+.+
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~---~~~~~~D 70 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREYMQG---SRVIIID 70 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHHTTT---CCEEEEE
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHHHCC---CEEEEEe
Confidence 566789999999999999999998765543 6666543
|
| >2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.10 E-value=0.011 Score=54.03 Aligned_cols=23 Identities=30% Similarity=0.650 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
.++|+|++|+|||||++.+.|..
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCccHHHHHHHHhcCC
Confidence 47899999999999999998764
|
| >1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* | Back alignment and structure |
|---|
Probab=95.09 E-value=0.0098 Score=53.87 Aligned_cols=23 Identities=30% Similarity=0.486 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
.++++|++|+|||||++.+.+..
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47899999999999999998753
|
| >1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A* | Back alignment and structure |
|---|
Probab=95.07 E-value=0.011 Score=57.59 Aligned_cols=26 Identities=19% Similarity=0.317 Sum_probs=21.8
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcC
Q 006897 95 RDSEILAVVGPSGTGKSSLLRIISGR 120 (627)
Q Consensus 95 ~~Ge~~aIiGpnGsGKSTLl~~L~Gl 120 (627)
.++.+++|.|++||||||+.+.|+..
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~ 30 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTH 30 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHH
Confidence 34678999999999999999999854
|
| >2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.06 E-value=0.011 Score=53.56 Aligned_cols=22 Identities=41% Similarity=0.493 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGR 120 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl 120 (627)
.++++|+.|+|||||++.+.+-
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999874
|
| >3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.05 E-value=0.0076 Score=59.06 Aligned_cols=25 Identities=16% Similarity=0.403 Sum_probs=22.1
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHH
Q 006897 94 ARDSEILAVVGPSGTGKSSLLRIIS 118 (627)
Q Consensus 94 i~~Ge~~aIiGpnGsGKSTLl~~L~ 118 (627)
+.+|+.+++.||+||||||++.++.
T Consensus 73 i~~g~~~~i~g~TGsGKTt~~~~~~ 97 (235)
T 3llm_A 73 ISQNSVVIIRGATGCGKTTQVPQFI 97 (235)
T ss_dssp HHHCSEEEEECCTTSSHHHHHHHHH
T ss_pred HhcCCEEEEEeCCCCCcHHhHHHHH
Confidence 4679999999999999999888765
|
| >3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* | Back alignment and structure |
|---|
Probab=95.04 E-value=0.009 Score=54.19 Aligned_cols=24 Identities=38% Similarity=0.617 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGRVR 122 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl~~ 122 (627)
.++|+|++|+|||||++.+.|...
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~~~ 27 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGVED 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC--
T ss_pred EEEEECCCCCCHHHHHHHHcCccc
Confidence 378999999999999999987543
|
| >3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus} | Back alignment and structure |
|---|
Probab=95.03 E-value=0.012 Score=56.56 Aligned_cols=22 Identities=23% Similarity=0.409 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGR 120 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl 120 (627)
.++|.||+||||||+.+.|+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999743
|
| >1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1 | Back alignment and structure |
|---|
Probab=95.00 E-value=0.023 Score=59.78 Aligned_cols=34 Identities=24% Similarity=0.256 Sum_probs=27.4
Q ss_pred eeeceE--EEEeCCeEEEEECCCCCcHHHHHHHHHc
Q 006897 86 ILKSVS--FEARDSEILAVVGPSGTGKSSLLRIISG 119 (627)
Q Consensus 86 iL~~vs--l~i~~Ge~~aIiGpnGsGKSTLl~~L~G 119 (627)
-||.+- .-+++|+++.|.||+|+|||||...++.
T Consensus 61 ~LD~~Lg~GGl~~G~li~I~G~pGsGKTtlal~la~ 96 (366)
T 1xp8_A 61 SLDLALGVGGIPRGRITEIYGPESGGKTTLALAIVA 96 (366)
T ss_dssp HHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred HHHHHhCCCCccCCcEEEEEcCCCCChHHHHHHHHH
Confidence 355543 3689999999999999999999877753
|
| >2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A | Back alignment and structure |
|---|
Probab=95.00 E-value=0.013 Score=55.56 Aligned_cols=26 Identities=19% Similarity=0.441 Sum_probs=22.2
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 006897 96 DSEILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 96 ~Ge~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
.+-+++|+|+.||||||+.+.|+..+
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34589999999999999999998543
|
| >3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A* | Back alignment and structure |
|---|
Probab=94.99 E-value=0.012 Score=59.21 Aligned_cols=23 Identities=35% Similarity=0.703 Sum_probs=21.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
.++|+|++|+|||||++.|+|..
T Consensus 5 kI~lvG~~nvGKSTL~n~L~g~~ 27 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLITGHN 27 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999864
|
| >2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=94.98 E-value=0.011 Score=53.11 Aligned_cols=23 Identities=30% Similarity=0.453 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
.++++|+.|+|||||++.+.+..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998764
|
| >1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* | Back alignment and structure |
|---|
Probab=94.98 E-value=0.011 Score=53.22 Aligned_cols=23 Identities=30% Similarity=0.419 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
.++++|++|+|||||++.+.+-.
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~~ 27 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999998643
|
| >3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A* | Back alignment and structure |
|---|
Probab=94.98 E-value=0.012 Score=53.41 Aligned_cols=23 Identities=39% Similarity=0.553 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
.++|+|++|+|||||++.+.+..
T Consensus 4 ki~ivG~~~~GKSsli~~l~~~~ 26 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGGLQ 26 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHHhcc
Confidence 37899999999999999998754
|
| >2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=94.97 E-value=0.013 Score=54.94 Aligned_cols=23 Identities=22% Similarity=0.429 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
+++|.|+.||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998654
|
| >1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* | Back alignment and structure |
|---|
Probab=94.94 E-value=0.012 Score=53.22 Aligned_cols=23 Identities=30% Similarity=0.335 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
.++++|+.|+|||||++.+.+..
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 47899999999999999998753
|
| >1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A* | Back alignment and structure |
|---|
Probab=94.94 E-value=0.011 Score=54.34 Aligned_cols=24 Identities=25% Similarity=0.432 Sum_probs=20.8
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 006897 98 EILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 98 e~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
.+++|.|++||||||+.+.|+..+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 368999999999999999998543
|
| >1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A* | Back alignment and structure |
|---|
Probab=94.93 E-value=0.014 Score=55.52 Aligned_cols=24 Identities=21% Similarity=0.389 Sum_probs=21.1
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcC
Q 006897 97 SEILAVVGPSGTGKSSLLRIISGR 120 (627)
Q Consensus 97 Ge~~aIiGpnGsGKSTLl~~L~Gl 120 (627)
..+++|.|++||||||+.+.|+-.
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~~ 38 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVKD 38 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999999844
|
| >1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A* | Back alignment and structure |
|---|
Probab=94.93 E-value=0.014 Score=53.65 Aligned_cols=24 Identities=33% Similarity=0.470 Sum_probs=21.4
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 006897 98 EILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 98 e~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
++++|.|+.||||||+.+.|+..+
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 689999999999999999998543
|
| >2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... | Back alignment and structure |
|---|
Probab=94.90 E-value=0.011 Score=53.27 Aligned_cols=23 Identities=39% Similarity=0.472 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
.++++|+.|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 37899999999999999998754
|
| >1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* | Back alignment and structure |
|---|
Probab=94.89 E-value=0.01 Score=55.29 Aligned_cols=22 Identities=23% Similarity=0.530 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGR 120 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl 120 (627)
.++|+|++|+|||||++.+.+.
T Consensus 18 ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 18 RILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999875
|
| >1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* | Back alignment and structure |
|---|
Probab=94.89 E-value=0.012 Score=53.31 Aligned_cols=23 Identities=26% Similarity=0.458 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
-++++|+.|+|||||++.+.+..
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47899999999999999998765
|
| >3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.87 E-value=0.012 Score=53.99 Aligned_cols=23 Identities=43% Similarity=0.605 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
.++|+|++|+|||||++.+.+..
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~~ 33 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADNT 33 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998754
|
| >2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=94.87 E-value=0.015 Score=53.34 Aligned_cols=22 Identities=23% Similarity=0.324 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGR 120 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl 120 (627)
.++|.|++||||||+.+.|+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRS 23 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999854
|
| >1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* | Back alignment and structure |
|---|
Probab=94.86 E-value=0.013 Score=53.34 Aligned_cols=23 Identities=22% Similarity=0.288 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
.++++|++|+|||||++.+.+..
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~~ 30 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCENK 30 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47899999999999999998653
|
| >3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A* | Back alignment and structure |
|---|
Probab=94.85 E-value=0.014 Score=56.08 Aligned_cols=22 Identities=27% Similarity=0.383 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGR 120 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl 120 (627)
.++|+||+||||||+.+.|+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999754
|
| >2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A* | Back alignment and structure |
|---|
Probab=94.84 E-value=0.017 Score=52.99 Aligned_cols=24 Identities=25% Similarity=0.505 Sum_probs=21.3
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcC
Q 006897 97 SEILAVVGPSGTGKSSLLRIISGR 120 (627)
Q Consensus 97 Ge~~aIiGpnGsGKSTLl~~L~Gl 120 (627)
.-.++|+|++|+|||||++.+.+-
T Consensus 8 ~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 8 PPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 446899999999999999999874
|
| >1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.83 E-value=0.013 Score=53.11 Aligned_cols=23 Identities=26% Similarity=0.368 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
-++++|+.|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37899999999999999998654
|
| >3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A* | Back alignment and structure |
|---|
Probab=94.83 E-value=0.016 Score=57.82 Aligned_cols=26 Identities=23% Similarity=0.441 Sum_probs=23.0
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 006897 96 DSEILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 96 ~Ge~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
++.++.|.|++||||||+.+.|+..+
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~L 28 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKIL 28 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 46789999999999999999998653
|
| >1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A | Back alignment and structure |
|---|
Probab=94.82 E-value=0.014 Score=60.77 Aligned_cols=35 Identities=17% Similarity=0.124 Sum_probs=29.3
Q ss_pred eeeceE-EEEeCCeEEEEECCCCCcHHHHHHHHHcC
Q 006897 86 ILKSVS-FEARDSEILAVVGPSGTGKSSLLRIISGR 120 (627)
Q Consensus 86 iL~~vs-l~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl 120 (627)
-||.+- .-+++|+++.|.||+|+|||||+..++..
T Consensus 110 ~LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 110 EFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp HHHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred hHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 355543 46899999999999999999999998874
|
| >1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1 | Back alignment and structure |
|---|
Probab=94.82 E-value=0.011 Score=57.06 Aligned_cols=26 Identities=19% Similarity=0.374 Sum_probs=22.1
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 006897 96 DSEILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 96 ~Ge~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
.+.++.|+|++||||||+.+.|+-.+
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34578999999999999999998543
|
| >1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* | Back alignment and structure |
|---|
Probab=94.81 E-value=0.013 Score=52.96 Aligned_cols=23 Identities=35% Similarity=0.497 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
.++++|++|+|||||++.+.+-.
T Consensus 5 ki~v~G~~~~GKssli~~l~~~~ 27 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQGI 27 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 37899999999999999998753
|
| >1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* | Back alignment and structure |
|---|
Probab=94.81 E-value=0.013 Score=53.67 Aligned_cols=23 Identities=30% Similarity=0.437 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
-++|+|+.|+|||||++.+.+..
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~~ 31 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTNK 31 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999998653
|
| >1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* | Back alignment and structure |
|---|
Probab=94.80 E-value=0.013 Score=53.77 Aligned_cols=23 Identities=30% Similarity=0.489 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
.++|+|++|+|||||++.+.+..
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 48999999999999999998754
|
| >2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A* | Back alignment and structure |
|---|
Probab=94.80 E-value=0.012 Score=54.92 Aligned_cols=24 Identities=29% Similarity=0.452 Sum_probs=20.9
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 006897 98 EILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 98 e~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
.+++|+|++||||||+.+.|+..+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 468999999999999999998543
|
| >1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A* | Back alignment and structure |
|---|
Probab=94.78 E-value=0.015 Score=54.38 Aligned_cols=24 Identities=25% Similarity=0.411 Sum_probs=21.2
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcC
Q 006897 97 SEILAVVGPSGTGKSSLLRIISGR 120 (627)
Q Consensus 97 Ge~~aIiGpnGsGKSTLl~~L~Gl 120 (627)
+.+++|.|++||||||+.+.|+..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~ 29 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 358999999999999999999753
|
| >1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=94.77 E-value=0.021 Score=59.86 Aligned_cols=24 Identities=25% Similarity=0.371 Sum_probs=21.4
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcC
Q 006897 97 SEILAVVGPSGTGKSSLLRIISGR 120 (627)
Q Consensus 97 Ge~~aIiGpnGsGKSTLl~~L~Gl 120 (627)
|-.++|+|.+|+|||||++.|+|-
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~ 25 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKA 25 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
Confidence 346899999999999999999984
|
| >1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A | Back alignment and structure |
|---|
Probab=94.76 E-value=0.012 Score=53.39 Aligned_cols=23 Identities=35% Similarity=0.465 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
-++|+|++|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVEDK 27 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 37899999999999999998754
|
| >1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A* | Back alignment and structure |
|---|
Probab=94.73 E-value=0.013 Score=54.92 Aligned_cols=23 Identities=35% Similarity=0.502 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
.++|+|+.|+|||||++.|.|..
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 1svi_A 25 EIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999763
|
| >2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=94.70 E-value=0.016 Score=55.11 Aligned_cols=24 Identities=33% Similarity=0.627 Sum_probs=21.3
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcC
Q 006897 97 SEILAVVGPSGTGKSSLLRIISGR 120 (627)
Q Consensus 97 Ge~~aIiGpnGsGKSTLl~~L~Gl 120 (627)
.-+++|+|+.||||||+.+.|+-.
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 457999999999999999999854
|
| >3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A | Back alignment and structure |
|---|
Probab=94.66 E-value=0.013 Score=54.48 Aligned_cols=23 Identities=48% Similarity=0.557 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
.++|+|+.|+|||||++.+.|..
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCc
Confidence 58899999999999999998864
|
| >2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* | Back alignment and structure |
|---|
Probab=94.65 E-value=0.013 Score=53.68 Aligned_cols=23 Identities=39% Similarity=0.424 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
.++|+|+.|+|||||++.+.+..
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~~ 33 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQSY 33 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 47999999999999999998763
|
| >1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A* | Back alignment and structure |
|---|
Probab=94.65 E-value=0.016 Score=57.31 Aligned_cols=24 Identities=29% Similarity=0.369 Sum_probs=21.2
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 006897 98 EILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 98 e~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
-+++|.|++||||||+.+.|+..+
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999998643
|
| >3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=94.65 E-value=0.018 Score=56.79 Aligned_cols=25 Identities=16% Similarity=0.238 Sum_probs=22.2
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcC
Q 006897 96 DSEILAVVGPSGTGKSSLLRIISGR 120 (627)
Q Consensus 96 ~Ge~~aIiGpnGsGKSTLl~~L~Gl 120 (627)
++-+++|.||+||||||+.+.|+-.
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~ 52 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKS 52 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 5668999999999999999999743
|
| >1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2 | Back alignment and structure |
|---|
Probab=94.64 E-value=0.012 Score=64.75 Aligned_cols=35 Identities=23% Similarity=0.264 Sum_probs=29.2
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHc
Q 006897 85 HILKSVSFEARDSEILAVVGPSGTGKSSLLRIISG 119 (627)
Q Consensus 85 ~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~G 119 (627)
.-|+.+..-+.+|+++.|.|++|+|||||+.-++-
T Consensus 230 ~~LD~~lgGl~~G~l~li~G~pG~GKT~lal~~a~ 264 (503)
T 1q57_A 230 TGINDKTLGARGGEVIMVTSGSGMVMSTFVRQQAL 264 (503)
T ss_dssp TTHHHHHCCCCTTCEEEEEESSCHHHHHHHHHHHH
T ss_pred hhhhHhhcccCCCeEEEEeecCCCCchHHHHHHHH
Confidence 45666655699999999999999999999877753
|
| >1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* | Back alignment and structure |
|---|
Probab=94.60 E-value=0.016 Score=52.50 Aligned_cols=22 Identities=36% Similarity=0.421 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGR 120 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl 120 (627)
.++|+|+.|+|||||++.+.+-
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999864
|
| >4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* | Back alignment and structure |
|---|
Probab=94.60 E-value=0.016 Score=53.68 Aligned_cols=23 Identities=39% Similarity=0.473 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
-++|+|+.|+|||||++.|.+..
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 47899999999999999998754
|
| >2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.59 E-value=0.014 Score=54.09 Aligned_cols=22 Identities=32% Similarity=0.584 Sum_probs=20.2
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 006897 100 LAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 100 ~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
++|+|++|+|||||++.+.+..
T Consensus 4 i~v~G~~~~GKSsli~~l~~~~ 25 (190)
T 2cxx_A 4 IIFAGRSNVGKSTLIYRLTGKK 25 (190)
T ss_dssp EEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEECCCCCCHHHHHHHHhCcC
Confidence 7899999999999999999764
|
| >2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* | Back alignment and structure |
|---|
Probab=94.59 E-value=0.018 Score=52.84 Aligned_cols=23 Identities=26% Similarity=0.446 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
.++|+|++|+|||||++.+.+..
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~~ 30 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQET 30 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGGG
T ss_pred EEEEECcCCCCHHHHHHHHHhCc
Confidence 47899999999999999998753
|
| >3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=94.55 E-value=0.016 Score=54.07 Aligned_cols=23 Identities=26% Similarity=0.379 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
.++|+|+.|+|||||++.|.|..
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 48999999999999999998864
|
| >2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.54 E-value=0.016 Score=54.16 Aligned_cols=23 Identities=30% Similarity=0.538 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
.++|+|++|+|||||++.+.+..
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~~ 49 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRNE 49 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47899999999999999998753
|
| >1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* | Back alignment and structure |
|---|
Probab=94.53 E-value=0.017 Score=52.56 Aligned_cols=22 Identities=23% Similarity=0.458 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGR 120 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl 120 (627)
.++++|++|+|||||++.+.+-
T Consensus 9 ~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 9 RILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999764
|
| >2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=94.53 E-value=0.016 Score=60.71 Aligned_cols=26 Identities=23% Similarity=0.456 Sum_probs=23.0
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 006897 96 DSEILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 96 ~Ge~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
..-.++++|++|+|||||++.|+|..
T Consensus 166 ~~~~v~lvG~~gvGKSTLin~L~~~~ 191 (357)
T 2e87_A 166 EIPTVVIAGHPNVGKSTLLKALTTAK 191 (357)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHCSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 44589999999999999999999864
|
| >3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli} | Back alignment and structure |
|---|
Probab=94.50 E-value=0.09 Score=66.06 Aligned_cols=50 Identities=14% Similarity=0.216 Sum_probs=34.7
Q ss_pred eeeceEE--EEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCcc
Q 006897 86 ILKSVSF--EARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQ 137 (627)
Q Consensus 86 iL~~vsl--~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~ 137 (627)
-||.+-. -+++|+++.|.||+|+|||||+..++......+ ..-++++.+.
T Consensus 370 ~LD~lLG~GGl~~G~lilI~G~pGsGKTtLaLqia~~~a~~G--~~vlyis~E~ 421 (2050)
T 3cmu_A 370 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREG--KTCAFIDAEH 421 (2050)
T ss_dssp HHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTTT--CCEEEECTTS
T ss_pred HHHHHhccCCccCCcEEEEEeCCCCCHHHHHHHHHHHHHhcC--CeEEEEEcCC
Confidence 4665542 599999999999999999999888765432221 1345556544
|
| >1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... | Back alignment and structure |
|---|
Probab=94.50 E-value=0.017 Score=52.13 Aligned_cols=21 Identities=24% Similarity=0.409 Sum_probs=19.1
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 006897 100 LAVVGPSGTGKSSLLRIISGR 120 (627)
Q Consensus 100 ~aIiGpnGsGKSTLl~~L~Gl 120 (627)
++++|++|+|||||++.+.+-
T Consensus 3 i~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 789999999999999999753
|
| >3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* | Back alignment and structure |
|---|
Probab=94.50 E-value=0.017 Score=53.61 Aligned_cols=23 Identities=30% Similarity=0.423 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
.++|+|+.|+|||||++.+.+..
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~~ 35 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDGK 35 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999998743
|
| >3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* | Back alignment and structure |
|---|
Probab=94.47 E-value=0.018 Score=53.61 Aligned_cols=25 Identities=28% Similarity=0.473 Sum_probs=21.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGRVRD 123 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl~~~ 123 (627)
.++|+|++|+|||||++.+.|....
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~~~ 40 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKVPE 40 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTSCG
T ss_pred EEEEECCCCCCHHHHHHHHHhhccc
Confidence 4689999999999999999987543
|
| >3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A | Back alignment and structure |
|---|
Probab=94.47 E-value=0.021 Score=55.15 Aligned_cols=27 Identities=19% Similarity=0.439 Sum_probs=23.9
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCCC
Q 006897 96 DSEILAVVGPSGTGKSSLLRIISGRVR 122 (627)
Q Consensus 96 ~Ge~~aIiGpnGsGKSTLl~~L~Gl~~ 122 (627)
++..+.|.||+|+|||||++.++....
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~ 77 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARAN 77 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 578899999999999999999987653
|
| >1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1 | Back alignment and structure |
|---|
Probab=94.45 E-value=0.019 Score=58.62 Aligned_cols=25 Identities=36% Similarity=0.561 Sum_probs=22.0
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 006897 96 DSEILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 96 ~Ge~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
.| .++|+|++|+|||||++.|.|..
T Consensus 7 ~g-~V~ivG~~nvGKSTLln~l~g~~ 31 (301)
T 1wf3_A 7 SG-FVAIVGKPNVGKSTLLNNLLGVK 31 (301)
T ss_dssp EE-EEEEECSTTSSHHHHHHHHHTSC
T ss_pred CC-EEEEECCCCCCHHHHHHHHhCCc
Confidence 44 58999999999999999999863
|
| >1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.44 E-value=0.011 Score=54.60 Aligned_cols=23 Identities=22% Similarity=0.398 Sum_probs=20.2
Q ss_pred CeEEEEECCCCCcHHHHHHHHHc
Q 006897 97 SEILAVVGPSGTGKSSLLRIISG 119 (627)
Q Consensus 97 Ge~~aIiGpnGsGKSTLl~~L~G 119 (627)
.=.++|+|++|+|||||++.+.+
T Consensus 18 ~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 18 ELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp CEEEEEEEETTSSHHHHHHHTCC
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 34689999999999999999974
|
| >2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A* | Back alignment and structure |
|---|
Probab=94.43 E-value=0.021 Score=58.97 Aligned_cols=35 Identities=20% Similarity=0.236 Sum_probs=29.1
Q ss_pred eeeceE-EEEeCCeEEEEECCCCCcHHHHHHHHHcC
Q 006897 86 ILKSVS-FEARDSEILAVVGPSGTGKSSLLRIISGR 120 (627)
Q Consensus 86 iL~~vs-l~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl 120 (627)
.||.+- .-+++|+++.|.||+|+|||||+..++..
T Consensus 95 ~LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~~ 130 (324)
T 2z43_A 95 ALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVN 130 (324)
T ss_dssp HHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred hHHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHHH
Confidence 355543 57899999999999999999999988764
|
| >1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=94.40 E-value=0.01 Score=60.47 Aligned_cols=25 Identities=28% Similarity=0.477 Sum_probs=18.9
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcC
Q 006897 96 DSEILAVVGPSGTGKSSLLRIISGR 120 (627)
Q Consensus 96 ~Ge~~aIiGpnGsGKSTLl~~L~Gl 120 (627)
++-+++|.||+||||||+.+.|+..
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~ 28 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQI 28 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHH
Confidence 3558999999999999999999854
|
| >2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.39 E-value=0.019 Score=52.79 Aligned_cols=23 Identities=35% Similarity=0.497 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
.++|+|++|+|||||++.+.+..
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 47999999999999999998754
|
| >2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* | Back alignment and structure |
|---|
Probab=94.36 E-value=0.019 Score=52.94 Aligned_cols=23 Identities=30% Similarity=0.335 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
.++|+|+.|+|||||++.+.+..
T Consensus 20 ki~v~G~~~~GKSsli~~l~~~~ 42 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMYDE 42 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhhCC
Confidence 48899999999999999998653
|
| >3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=94.35 E-value=0.02 Score=57.82 Aligned_cols=27 Identities=30% Similarity=0.523 Sum_probs=23.8
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 006897 95 RDSEILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 95 ~~Ge~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
.++.-+.|.||+|+|||||++.+++..
T Consensus 52 ~~~~~vll~Gp~GtGKT~la~~la~~~ 78 (297)
T 3b9p_A 52 APAKGLLLFGPPGNGKTLLARAVATEC 78 (297)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 356789999999999999999999765
|
| >2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* | Back alignment and structure |
|---|
Probab=94.34 E-value=0.017 Score=52.83 Aligned_cols=22 Identities=27% Similarity=0.359 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGR 120 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl 120 (627)
.++|+|+.|+|||||++.+.+.
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999999864
|
| >1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* | Back alignment and structure |
|---|
Probab=94.33 E-value=0.019 Score=52.44 Aligned_cols=23 Identities=30% Similarity=0.521 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
.++|+|+.|+|||||++.+.+..
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47899999999999999998754
|
| >3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* | Back alignment and structure |
|---|
Probab=94.32 E-value=0.019 Score=53.40 Aligned_cols=23 Identities=39% Similarity=0.472 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
.++++|+.|+|||||++.|.+..
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47899999999999999998754
|
| >2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A* | Back alignment and structure |
|---|
Probab=94.32 E-value=0.022 Score=55.23 Aligned_cols=22 Identities=23% Similarity=0.607 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGR 120 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl 120 (627)
+++|.|++||||||+.+.|+-.
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~ 23 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDK 23 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999743
|
| >1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
Probab=94.31 E-value=0.016 Score=60.64 Aligned_cols=29 Identities=28% Similarity=0.387 Sum_probs=25.2
Q ss_pred eCCe--EEEEECCCCCcHHHHHHHHHcCCCC
Q 006897 95 RDSE--ILAVVGPSGTGKSSLLRIISGRVRD 123 (627)
Q Consensus 95 ~~Ge--~~aIiGpnGsGKSTLl~~L~Gl~~~ 123 (627)
.++. .+.|.||+|+|||||++.+++...+
T Consensus 40 ~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~ 70 (389)
T 1fnn_A 40 PGHHYPRATLLGRPGTGKTVTLRKLWELYKD 70 (389)
T ss_dssp TTSSCCEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CCCCCCeEEEECCCCCCHHHHHHHHHHHHhh
Confidence 3456 8999999999999999999987765
|
| >3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A* | Back alignment and structure |
|---|
Probab=94.31 E-value=0.017 Score=58.06 Aligned_cols=23 Identities=43% Similarity=0.499 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
.++|+|++|+|||||++.|.|.-
T Consensus 10 ~I~vvG~~g~GKSTLin~L~~~~ 32 (274)
T 3t5d_A 10 TLMVVGESGLGKSTLINSLFLTD 32 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHSSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 38899999999999999997753
|
| >2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* | Back alignment and structure |
|---|
Probab=94.28 E-value=0.02 Score=52.55 Aligned_cols=23 Identities=35% Similarity=0.439 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
.++|+|+.|+|||||++.+.+..
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~~ 36 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKDQ 36 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47999999999999999998754
|
| >2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus} | Back alignment and structure |
|---|
Probab=94.27 E-value=0.02 Score=57.86 Aligned_cols=22 Identities=36% Similarity=0.542 Sum_probs=20.3
Q ss_pred CeEEEEECCCCCcHHHHHHHHH
Q 006897 97 SEILAVVGPSGTGKSSLLRIIS 118 (627)
Q Consensus 97 Ge~~aIiGpnGsGKSTLl~~L~ 118 (627)
.-+++|.|++||||||+.+.|+
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHH
Confidence 3579999999999999999998
|
| >3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A* | Back alignment and structure |
|---|
Probab=94.27 E-value=0.022 Score=58.28 Aligned_cols=23 Identities=39% Similarity=0.598 Sum_probs=21.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
.++|+|++|+|||||++.|.|..
T Consensus 12 ~v~ivG~~nvGKSTLin~l~g~~ 34 (308)
T 3iev_A 12 YVAIVGKPNVGKSTLLNNLLGTK 34 (308)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 89999999999999999999863
|
| >2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A | Back alignment and structure |
|---|
Probab=94.26 E-value=0.019 Score=60.49 Aligned_cols=21 Identities=29% Similarity=0.566 Sum_probs=19.8
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 006897 100 LAVVGPSGTGKSSLLRIISGR 120 (627)
Q Consensus 100 ~aIiGpnGsGKSTLl~~L~Gl 120 (627)
++|+|++|+|||||++.|+|.
T Consensus 4 v~IVG~pnvGKSTL~n~L~~~ 24 (368)
T 2dby_A 4 VGIVGLPNVGKSTLFNALTRA 24 (368)
T ss_dssp EEEECCSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 789999999999999999986
|
| >3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=94.26 E-value=0.021 Score=53.40 Aligned_cols=22 Identities=27% Similarity=0.371 Sum_probs=18.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGR 120 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl 120 (627)
.++|+|++|+|||||++.+.+-
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999766543
|
| >3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus} | Back alignment and structure |
|---|
Probab=94.25 E-value=0.028 Score=58.18 Aligned_cols=26 Identities=31% Similarity=0.543 Sum_probs=23.4
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 006897 96 DSEILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 96 ~Ge~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
++.++.|+||+|||||||...|+..+
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHC
Confidence 46689999999999999999999765
|
| >2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=94.25 E-value=0.017 Score=60.21 Aligned_cols=29 Identities=17% Similarity=0.501 Sum_probs=25.4
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCCC
Q 006897 95 RDSEILAVVGPSGTGKSSLLRIISGRVRD 123 (627)
Q Consensus 95 ~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~ 123 (627)
.++..+.|.||+|+|||||++.+++...+
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~ 71 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHK 71 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 46789999999999999999999987643
|
| >3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.24 E-value=0.017 Score=54.63 Aligned_cols=22 Identities=41% Similarity=0.601 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGR 120 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl 120 (627)
.++|+|++|+|||||++.+.|.
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~~ 46 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGGL 46 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 5799999999999999999764
|
| >2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A* | Back alignment and structure |
|---|
Probab=94.23 E-value=0.037 Score=52.89 Aligned_cols=36 Identities=22% Similarity=0.202 Sum_probs=29.3
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 006897 85 HILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 85 ~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
..++..-..+ .|..+.|+||+|+|||||...|+...
T Consensus 23 ~~lHa~~v~~-~g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 23 RSMHGVLVDI-YGLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp CCEESEEEEE-TTEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred eeeeEEEEEE-CCEEEEEECCCCCCHHHHHHHHHHhC
Confidence 4577766665 57899999999999999999998653
|
| >1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.20 E-value=0.021 Score=54.61 Aligned_cols=23 Identities=30% Similarity=0.663 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
.++|+|++|+|||||++.|.+..
T Consensus 14 ~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 14 SIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999998764
|
| >3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila} | Back alignment and structure |
|---|
Probab=94.20 E-value=0.022 Score=56.79 Aligned_cols=23 Identities=17% Similarity=0.385 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
.++|+|++|||||||++.|+|..
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~ 25 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNAN 25 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 57999999999999999999863
|
| >2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.17 E-value=0.022 Score=53.69 Aligned_cols=23 Identities=30% Similarity=0.335 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
-++|+|+.|+|||||++.+.+..
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~~ 38 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYDE 38 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 47899999999999999998653
|
| >1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* | Back alignment and structure |
|---|
Probab=94.17 E-value=0.022 Score=53.76 Aligned_cols=23 Identities=30% Similarity=0.535 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
.++|+|+.|+|||||++.+.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47999999999999999998754
|
| >4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A* | Back alignment and structure |
|---|
Probab=94.16 E-value=0.024 Score=57.47 Aligned_cols=27 Identities=26% Similarity=0.572 Sum_probs=24.1
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCCCCC
Q 006897 98 EILAVVGPSGTGKSSLLRIISGRVRDQ 124 (627)
Q Consensus 98 e~~aIiGpnGsGKSTLl~~L~Gl~~~~ 124 (627)
..+.|.||+|+|||||.+.|++.+...
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~~~~ 74 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATLFDT 74 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHHHSC
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHcCC
Confidence 689999999999999999999887543
|
| >1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* | Back alignment and structure |
|---|
Probab=94.16 E-value=0.023 Score=52.72 Aligned_cols=26 Identities=23% Similarity=0.423 Sum_probs=22.2
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 006897 96 DSEILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 96 ~Ge~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
+.=.++++|++|+|||||++.+.+..
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCC
Confidence 34468999999999999999998754
|
| >2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* | Back alignment and structure |
|---|
Probab=94.14 E-value=0.022 Score=53.07 Aligned_cols=23 Identities=30% Similarity=0.392 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
.++|+|+.|+|||||++.+.+..
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47899999999999999998754
|
| >2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* | Back alignment and structure |
|---|
Probab=94.12 E-value=0.02 Score=52.95 Aligned_cols=23 Identities=39% Similarity=0.570 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
.++|+|+.|+|||||++.+.+..
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47899999999999999998754
|
| >4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A* | Back alignment and structure |
|---|
Probab=94.11 E-value=0.029 Score=54.28 Aligned_cols=29 Identities=28% Similarity=0.519 Sum_probs=24.9
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCCC
Q 006897 95 RDSEILAVVGPSGTGKSSLLRIISGRVRD 123 (627)
Q Consensus 95 ~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~ 123 (627)
.+|.+++|.|++||||||+.+.|+-.+..
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~~ 32 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAERLRE 32 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 46889999999999999999999876643
|
| >1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=94.09 E-value=0.029 Score=51.66 Aligned_cols=27 Identities=22% Similarity=0.523 Sum_probs=23.0
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 006897 95 RDSEILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 95 ~~Ge~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
..+..+.|.||+|+|||||++.++..+
T Consensus 41 ~~~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 41 RTKNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp SSSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 345678999999999999999998654
|
| >3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.08 E-value=0.023 Score=53.00 Aligned_cols=23 Identities=39% Similarity=0.547 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
.++|+|+.|+|||||++.+.+..
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 48999999999999999998754
|
| >2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A | Back alignment and structure |
|---|
Probab=94.05 E-value=0.023 Score=56.34 Aligned_cols=23 Identities=35% Similarity=0.429 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
.++|+|++|+|||||++.|.|..
T Consensus 24 ~I~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 24 RIILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp EEEEEECTTSCHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999864
|
| >3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II} | Back alignment and structure |
|---|
Probab=94.05 E-value=0.026 Score=54.47 Aligned_cols=25 Identities=24% Similarity=0.448 Sum_probs=21.7
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCC
Q 006897 97 SEILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 97 Ge~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
|-.+.|+|+.||||||+.+.|+-.+
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999999999999999998543
|
| >3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* | Back alignment and structure |
|---|
Probab=94.04 E-value=0.024 Score=52.32 Aligned_cols=23 Identities=39% Similarity=0.525 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
.++|+|+.|+|||||++.+.+..
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~~~ 42 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQKI 42 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 46899999999999999998653
|
| >2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.03 E-value=0.022 Score=53.36 Aligned_cols=22 Identities=36% Similarity=0.459 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGR 120 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl 120 (627)
-++|+|++|+|||||++.+.+-
T Consensus 10 ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 10 RVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHcC
Confidence 5899999999999999999874
|
| >1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* | Back alignment and structure |
|---|
Probab=94.03 E-value=0.021 Score=52.99 Aligned_cols=23 Identities=35% Similarity=0.566 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
.++|+|++|+|||||++.+.+..
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~~ 31 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKDC 31 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998753
|
| >1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... | Back alignment and structure |
|---|
Probab=94.00 E-value=0.025 Score=52.16 Aligned_cols=22 Identities=32% Similarity=0.385 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGR 120 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl 120 (627)
.++++|++|+|||||++.+.+-
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999854
|
| >1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.00 E-value=0.027 Score=53.08 Aligned_cols=23 Identities=26% Similarity=0.394 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
-++|+|+.|+|||||++.+.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999998764
|
| >2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.00 E-value=0.022 Score=53.36 Aligned_cols=23 Identities=26% Similarity=0.417 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
.++|+|+.|+|||||++.+.+..
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47999999999999999998754
|
| >2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* | Back alignment and structure |
|---|
Probab=93.98 E-value=0.025 Score=53.29 Aligned_cols=22 Identities=36% Similarity=0.676 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGR 120 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl 120 (627)
.++|+|++|+|||||++.+.|.
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999863
|
| >2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426} | Back alignment and structure |
|---|
Probab=93.98 E-value=0.031 Score=52.88 Aligned_cols=25 Identities=32% Similarity=0.430 Sum_probs=22.2
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCCC
Q 006897 98 EILAVVGPSGTGKSSLLRIISGRVR 122 (627)
Q Consensus 98 e~~aIiGpnGsGKSTLl~~L~Gl~~ 122 (627)
.-+.|.||+|+|||||++.|+....
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~ 79 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELA 79 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH
Confidence 6789999999999999999987654
|
| >3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A | Back alignment and structure |
|---|
Probab=93.97 E-value=0.027 Score=56.13 Aligned_cols=23 Identities=30% Similarity=0.527 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
.++|+|++|+|||||++.|+|..
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g~~ 29 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTGTK 29 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 48999999999999999999854
|
| >2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.96 E-value=0.025 Score=53.10 Aligned_cols=23 Identities=26% Similarity=0.570 Sum_probs=19.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
-++|+|++|+|||||++.+.+..
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~~~ 50 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTDDT 50 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC--
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998753
|
| >3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=93.94 E-value=0.023 Score=55.67 Aligned_cols=30 Identities=20% Similarity=0.427 Sum_probs=22.0
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHHcCCC
Q 006897 93 EARDSEILAVVGPSGTGKSSLLRIISGRVR 122 (627)
Q Consensus 93 ~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~ 122 (627)
+..+|.++.|.|++||||||+.+.|+..+.
T Consensus 21 ~m~~g~~I~~eG~~GsGKsT~~~~l~~~l~ 50 (227)
T 3v9p_A 21 SMARGKFITFEGIDGAGKTTHLQWFCDRLQ 50 (227)
T ss_dssp --CCCCEEEEECCC---CHHHHHHHHHHHH
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 345899999999999999999999986553
|
| >1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* | Back alignment and structure |
|---|
Probab=93.93 E-value=0.026 Score=52.57 Aligned_cols=22 Identities=27% Similarity=0.386 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGR 120 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl 120 (627)
.++|+|+.|+|||||++.+.+-
T Consensus 22 ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999864
|
| >1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A* | Back alignment and structure |
|---|
Probab=93.90 E-value=0.027 Score=54.12 Aligned_cols=22 Identities=18% Similarity=0.360 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGR 120 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl 120 (627)
.++|.|++||||||+.+.|+-.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEK 23 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3789999999999999999753
|
| >2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* | Back alignment and structure |
|---|
Probab=93.85 E-value=0.028 Score=52.58 Aligned_cols=23 Identities=30% Similarity=0.531 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
.++|+|+.|+|||||++.+.+..
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDKR 45 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47899999999999999998753
|
| >3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228} | Back alignment and structure |
|---|
Probab=93.83 E-value=0.03 Score=58.11 Aligned_cols=24 Identities=25% Similarity=0.559 Sum_probs=21.5
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 006897 98 EILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 98 e~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
.+++|+||+|||||||.+.|+..+
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l 31 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKF 31 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHc
Confidence 479999999999999999998654
|
| >3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.83 E-value=0.024 Score=53.50 Aligned_cols=23 Identities=22% Similarity=0.252 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
.++|+|+.|+|||||++.+.+..
T Consensus 26 ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 26 KVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCcCHHHHHHHHHhCC
Confidence 57899999999999999998764
|
| >1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A | Back alignment and structure |
|---|
Probab=93.83 E-value=0.032 Score=56.49 Aligned_cols=22 Identities=32% Similarity=0.534 Sum_probs=20.3
Q ss_pred eEEEEECCCCCcHHHHHHHHHc
Q 006897 98 EILAVVGPSGTGKSSLLRIISG 119 (627)
Q Consensus 98 e~~aIiGpnGsGKSTLl~~L~G 119 (627)
.++.|+|++||||||+.+.|+-
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999985
|
| >2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=93.82 E-value=0.027 Score=54.05 Aligned_cols=24 Identities=25% Similarity=0.491 Sum_probs=21.2
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 006897 98 EILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 98 e~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
-.++|+|++|+|||||++.|++..
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 478999999999999999998653
|
| >3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A | Back alignment and structure |
|---|
Probab=93.81 E-value=0.035 Score=56.89 Aligned_cols=25 Identities=28% Similarity=0.652 Sum_probs=22.1
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCC
Q 006897 97 SEILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 97 Ge~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
+.+++|+||+|||||||.+.|+-.+
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 4589999999999999999998654
|
| >3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C | Back alignment and structure |
|---|
Probab=93.81 E-value=0.028 Score=51.63 Aligned_cols=22 Identities=27% Similarity=0.356 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGR 120 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl 120 (627)
.++|+|+.|+|||||++.+.+-
T Consensus 10 ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 10 KCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4889999999999999999864
|
| >3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A* | Back alignment and structure |
|---|
Probab=93.81 E-value=0.027 Score=56.66 Aligned_cols=23 Identities=22% Similarity=0.602 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
.++|+|.+|||||||++.|+|..
T Consensus 5 ~I~lvG~~n~GKSTLin~l~g~~ 27 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLFNQLTGSR 27 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999864
|
| >1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A* | Back alignment and structure |
|---|
Probab=93.79 E-value=0.035 Score=54.14 Aligned_cols=26 Identities=19% Similarity=0.386 Sum_probs=22.3
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 006897 96 DSEILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 96 ~Ge~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
.+..+.|+|+.||||||+.+.|+-.+
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45679999999999999999998543
|
| >2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.79 E-value=0.028 Score=53.17 Aligned_cols=23 Identities=39% Similarity=0.554 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
-++|+|++|+|||||++.+.+..
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~~ 49 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFIENK 49 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHC--
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 47899999999999999998653
|
| >2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=93.78 E-value=0.029 Score=54.32 Aligned_cols=22 Identities=32% Similarity=0.560 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGR 120 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl 120 (627)
.++|+|++|+|||||++.+.|.
T Consensus 31 kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 31 TIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp EEEEECSTTSSHHHHHHHHTTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999875
|
| >1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=93.78 E-value=0.028 Score=52.25 Aligned_cols=22 Identities=27% Similarity=0.412 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGR 120 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl 120 (627)
.++|+|+.|+|||||++.+.+-
T Consensus 18 ~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 18 KVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5799999999999999999854
|
| >1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=93.78 E-value=0.034 Score=60.09 Aligned_cols=36 Identities=14% Similarity=0.308 Sum_probs=30.8
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 006897 85 HILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 85 ~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
++++.+ ..+-+|+..+|+||+|+|||||++.|++..
T Consensus 140 r~ID~L-~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~ 175 (473)
T 1sky_E 140 KVVDLL-APYIKGGKIGLFGGAGVGKTVLIQELIHNI 175 (473)
T ss_dssp HHHHHH-SCEETTCEEEEECCSSSCHHHHHHHHHHHH
T ss_pred hHHHHH-hhhccCCEEEEECCCCCCccHHHHHHHhhh
Confidence 466666 677789999999999999999999998654
|
| >3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=93.76 E-value=0.015 Score=59.91 Aligned_cols=36 Identities=8% Similarity=0.217 Sum_probs=31.7
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHc
Q 006897 84 LHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISG 119 (627)
Q Consensus 84 ~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~G 119 (627)
..-|+++..-+++|+++.|.|++|+|||||+..++.
T Consensus 55 ~~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~ 90 (315)
T 3bh0_A 55 FTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAK 90 (315)
T ss_dssp CHHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHH
T ss_pred hHHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 346888887799999999999999999999888864
|
| >3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A* | Back alignment and structure |
|---|
Probab=93.76 E-value=0.032 Score=54.97 Aligned_cols=28 Identities=18% Similarity=0.552 Sum_probs=24.8
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCCCC
Q 006897 96 DSEILAVVGPSGTGKSSLLRIISGRVRD 123 (627)
Q Consensus 96 ~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~ 123 (627)
+|.+++|.|++||||||+++.|+..+..
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~~ 53 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQQ 53 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 5889999999999999999999876643
|
| >1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* | Back alignment and structure |
|---|
Probab=93.75 E-value=0.029 Score=52.32 Aligned_cols=23 Identities=26% Similarity=0.466 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
.++|+|+.|+|||||++.+.+-.
T Consensus 24 ki~v~G~~~~GKSsli~~l~~~~ 46 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVIASGQ 46 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47899999999999999998643
|
| >3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=93.75 E-value=0.026 Score=52.79 Aligned_cols=23 Identities=30% Similarity=0.426 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
.++|+|+.|+|||||++.+.+..
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 47899999999999999998754
|
| >3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A* | Back alignment and structure |
|---|
Probab=93.75 E-value=0.026 Score=51.98 Aligned_cols=22 Identities=32% Similarity=0.342 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGR 120 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl 120 (627)
.++|+|++|+|||||++.+.+-
T Consensus 8 ki~~~G~~~~GKSsli~~l~~~ 29 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFVEG 29 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5789999999999999999843
|
| >2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.74 E-value=0.022 Score=53.16 Aligned_cols=23 Identities=13% Similarity=0.326 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
.++|+|+.|+|||||++.+.+..
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 23 HVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEECTTSSHHHHHHHTSCGG
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998764
|
| >4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927} | Back alignment and structure |
|---|
Probab=93.74 E-value=0.029 Score=52.43 Aligned_cols=23 Identities=13% Similarity=0.358 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
.++|+|++|+|||||++.+.+..
T Consensus 19 ki~v~G~~~~GKSsl~~~l~~~~ 41 (199)
T 4bas_A 19 QVVMCGLDNSGKTTIINQVKPAQ 41 (199)
T ss_dssp EEEEECCTTSCHHHHHHHHSCCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999998754
|
| >2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=93.73 E-value=0.03 Score=52.57 Aligned_cols=23 Identities=35% Similarity=0.492 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
-++|+|+.|+|||||++.+.+..
T Consensus 30 ki~v~G~~~vGKSsli~~l~~~~ 52 (196)
T 2atv_A 30 KLAIFGRAGVGKSALVVRFLTKR 52 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 58899999999999999998753
|
| >3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A* | Back alignment and structure |
|---|
Probab=93.72 E-value=0.03 Score=52.44 Aligned_cols=23 Identities=35% Similarity=0.436 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
.++|+|++|+|||||++.+.+..
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 48899999999999999998754
|
| >4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=93.72 E-value=0.015 Score=55.73 Aligned_cols=23 Identities=26% Similarity=0.482 Sum_probs=21.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
.++|+|++|+|||||++.|.|..
T Consensus 31 ~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 31 EIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp EEEEEESCHHHHHHHHHHHTTCS
T ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999874
|
| >1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A* | Back alignment and structure |
|---|
Probab=93.70 E-value=0.0084 Score=57.62 Aligned_cols=24 Identities=25% Similarity=0.511 Sum_probs=21.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGRVR 122 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl~~ 122 (627)
.+.|.||+|+|||||++.++..+.
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~~~~ 70 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAKGLN 70 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 889999999999999999986543
|
| >3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A* | Back alignment and structure |
|---|
Probab=93.69 E-value=0.032 Score=59.72 Aligned_cols=27 Identities=26% Similarity=0.428 Sum_probs=23.6
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcC
Q 006897 94 ARDSEILAVVGPSGTGKSSLLRIISGR 120 (627)
Q Consensus 94 i~~Ge~~aIiGpnGsGKSTLl~~L~Gl 120 (627)
-.+.+++.|+|++||||||+.+.|+..
T Consensus 255 ~~~~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 255 SPNPEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp CSSCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHh
Confidence 356789999999999999999999753
|
| >1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=93.68 E-value=0.031 Score=52.04 Aligned_cols=23 Identities=39% Similarity=0.587 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
.++|+|+.|+|||||++.+.+..
T Consensus 17 ~i~v~G~~~~GKssli~~l~~~~ 39 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRFTDDT 39 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58899999999999999998754
|
| >3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni} | Back alignment and structure |
|---|
Probab=93.68 E-value=0.038 Score=53.67 Aligned_cols=27 Identities=19% Similarity=0.417 Sum_probs=23.0
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcC
Q 006897 94 ARDSEILAVVGPSGTGKSSLLRIISGR 120 (627)
Q Consensus 94 i~~Ge~~aIiGpnGsGKSTLl~~L~Gl 120 (627)
+++..++.|+||.||||+|..+.|+-.
T Consensus 26 ~~k~kiI~llGpPGsGKgTqa~~L~~~ 52 (217)
T 3umf_A 26 LAKAKVIFVLGGPGSGKGTQCEKLVQK 52 (217)
T ss_dssp TTSCEEEEEECCTTCCHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 345678999999999999999999854
|
| >2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=93.68 E-value=0.027 Score=53.62 Aligned_cols=23 Identities=26% Similarity=0.593 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
.++|+|++|+|||||++.+.+..
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~~~ 50 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQGL 50 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 47999999999999999887643
|
| >2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* | Back alignment and structure |
|---|
Probab=93.67 E-value=0.027 Score=53.30 Aligned_cols=23 Identities=43% Similarity=0.560 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
.++|+|+.|+|||||++.+.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDDT 32 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999998754
|
| >2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.67 E-value=0.031 Score=52.69 Aligned_cols=23 Identities=26% Similarity=0.385 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
.++|+|+.|+|||||++.+.+..
T Consensus 30 ki~v~G~~~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 30 KIVLAGDAAVGKSSFLMRLCKNE 52 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 57999999999999999998754
|
| >2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* | Back alignment and structure |
|---|
Probab=93.66 E-value=0.035 Score=52.99 Aligned_cols=23 Identities=30% Similarity=0.456 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
.++|+|+.|+|||||++.+.+..
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~~ 49 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDNK 49 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47899999999999999998754
|
| >3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=93.65 E-value=0.031 Score=52.98 Aligned_cols=23 Identities=35% Similarity=0.465 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
.++|+|+.|+|||||++.+.+..
T Consensus 22 ~i~v~G~~~~GKSsli~~l~~~~ 44 (213)
T 3cph_A 22 KILLIGDSGVGKSCLLVRFVEDK 44 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 58999999999999999998653
|
| >1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B* | Back alignment and structure |
|---|
Probab=93.64 E-value=0.031 Score=56.94 Aligned_cols=23 Identities=48% Similarity=0.666 Sum_probs=21.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
.++|+|+.|+|||||++.|+|.-
T Consensus 26 ~I~vvG~~~~GKSTlln~l~g~~ 48 (315)
T 1jwy_B 26 QIVVVGSQSSGKSSVLENIVGRD 48 (315)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHHCCC
Confidence 68999999999999999999974
|
| >2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* | Back alignment and structure |
|---|
Probab=93.64 E-value=0.027 Score=52.19 Aligned_cols=22 Identities=27% Similarity=0.412 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGR 120 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl 120 (627)
.++|+|+.|+|||||++.+.+.
T Consensus 23 ~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 23 KVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp EEEEEEETTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4689999999999999999875
|
| >3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* | Back alignment and structure |
|---|
Probab=93.61 E-value=0.033 Score=52.35 Aligned_cols=24 Identities=21% Similarity=0.437 Sum_probs=21.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGRVR 122 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl~~ 122 (627)
.++|+|++|+|||||++.+.|...
T Consensus 22 ki~~vG~~~vGKTsLi~~l~~~~~ 45 (196)
T 3llu_A 22 RILLMGLRRSGKSSIQKVVFHKMS 45 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHSCCC
T ss_pred EEEEECCCCCCHHHHHHHHHhcCC
Confidence 478999999999999999998654
|
| >3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A* | Back alignment and structure |
|---|
Probab=93.57 E-value=0.11 Score=64.33 Aligned_cols=35 Identities=20% Similarity=0.243 Sum_probs=28.7
Q ss_pred eeeceE--EEEeCCeEEEEECCCCCcHHHHHHHHHcC
Q 006897 86 ILKSVS--FEARDSEILAVVGPSGTGKSSLLRIISGR 120 (627)
Q Consensus 86 iL~~vs--l~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl 120 (627)
-||.+- .-+++|+++.|.||+|+|||||...++..
T Consensus 370 ~LD~lLg~GGl~~G~lilI~G~pGsGKTtLaLq~a~~ 406 (1706)
T 3cmw_A 370 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAA 406 (1706)
T ss_dssp HHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHhccCCcCCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 466664 35999999999999999999998777543
|
| >2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A* | Back alignment and structure |
|---|
Probab=93.54 E-value=0.04 Score=56.54 Aligned_cols=34 Identities=21% Similarity=0.220 Sum_probs=28.5
Q ss_pred eeeceE-EEEeCCeEEEEECCCCCcHHHHHHHHHc
Q 006897 86 ILKSVS-FEARDSEILAVVGPSGTGKSSLLRIISG 119 (627)
Q Consensus 86 iL~~vs-l~i~~Ge~~aIiGpnGsGKSTLl~~L~G 119 (627)
.||.+- .-+++|+++.|.||+|+|||||...++.
T Consensus 86 ~LD~~l~GGl~~g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 86 ELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp HHHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred hHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 455543 5689999999999999999999988874
|
| >2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.54 E-value=0.037 Score=52.02 Aligned_cols=23 Identities=26% Similarity=0.302 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
.++|+|+.|+|||||++.+.+..
T Consensus 22 ki~~~G~~~~GKssl~~~l~~~~ 44 (201)
T 2q3h_A 22 KCVLVGDGAVGKTSLVVSYTTNG 44 (201)
T ss_dssp EEEEECSTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 58999999999999999998653
|
| >2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A | Back alignment and structure |
|---|
Probab=93.51 E-value=0.026 Score=51.84 Aligned_cols=22 Identities=36% Similarity=0.468 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGR 120 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl 120 (627)
.++++|++|+|||||++.+.+-
T Consensus 9 ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999999864
|
| >4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A* | Back alignment and structure |
|---|
Probab=93.50 E-value=0.038 Score=53.46 Aligned_cols=28 Identities=18% Similarity=0.420 Sum_probs=24.6
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCCCC
Q 006897 96 DSEILAVVGPSGTGKSSLLRIISGRVRD 123 (627)
Q Consensus 96 ~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~ 123 (627)
+|.++.+-|++||||||+++.|...+..
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~ 29 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLEQ 29 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4889999999999999999999876643
|
| >2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=93.49 E-value=0.035 Score=53.31 Aligned_cols=25 Identities=24% Similarity=0.511 Sum_probs=21.9
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCC
Q 006897 97 SEILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 97 Ge~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
+-+++|+|++||||||+.+.|+..+
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4578999999999999999998654
|
| >3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis} | Back alignment and structure |
|---|
Probab=93.49 E-value=0.044 Score=53.46 Aligned_cols=28 Identities=18% Similarity=0.359 Sum_probs=24.6
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCC
Q 006897 95 RDSEILAVVGPSGTGKSSLLRIISGRVR 122 (627)
Q Consensus 95 ~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~ 122 (627)
.+|.++++.|++||||||+.+.|+..+.
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~ 46 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLS 46 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3688999999999999999999986654
|
| >3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.47 E-value=0.036 Score=51.80 Aligned_cols=23 Identities=35% Similarity=0.456 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
.++|+|+.|+|||||++.+.+-.
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~~ 45 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTKR 45 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCcHHHHHHHHHhCC
Confidence 47899999999999999887653
|
| >2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=93.47 E-value=0.031 Score=53.08 Aligned_cols=23 Identities=39% Similarity=0.509 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
.++|+|+.|+|||||++.+.+-.
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~~ 49 (207)
T 2fv8_A 27 KLVVVGDGACGKTCLLIVFSKDE 49 (207)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999998754
|
| >2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.43 E-value=0.035 Score=53.11 Aligned_cols=22 Identities=36% Similarity=0.629 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGR 120 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl 120 (627)
.++|+|++|+|||||++.+.+-
T Consensus 36 ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4889999999999999999874
|
| >3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=93.43 E-value=0.034 Score=55.65 Aligned_cols=28 Identities=25% Similarity=0.470 Sum_probs=24.2
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 006897 94 ARDSEILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 94 i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
+.++.-+.|.||+|+|||||++.++...
T Consensus 48 ~~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 48 IEPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 3566779999999999999999999765
|
| >3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A* | Back alignment and structure |
|---|
Probab=93.41 E-value=0.04 Score=53.50 Aligned_cols=29 Identities=17% Similarity=0.361 Sum_probs=25.5
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCCC
Q 006897 95 RDSEILAVVGPSGTGKSSLLRIISGRVRD 123 (627)
Q Consensus 95 ~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~ 123 (627)
.+|.++.+-|++||||||+.+.|+-.+..
T Consensus 3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 3 GRGKLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CCCCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 36899999999999999999999876653
|
| >1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=93.38 E-value=0.032 Score=53.21 Aligned_cols=23 Identities=35% Similarity=0.566 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
.++|+|++|+|||||++.+.+..
T Consensus 30 ki~vvG~~~vGKSsLi~~l~~~~ 52 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFAKDC 52 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998754
|
| >2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2 | Back alignment and structure |
|---|
Probab=93.34 E-value=0.037 Score=52.66 Aligned_cols=23 Identities=22% Similarity=0.251 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
.++|+|++|+|||||++.+.+-.
T Consensus 9 ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 9 AVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999998654
|
| >2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=93.34 E-value=0.036 Score=51.01 Aligned_cols=28 Identities=18% Similarity=0.387 Sum_probs=23.2
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCC
Q 006897 95 RDSEILAVVGPSGTGKSSLLRIISGRVR 122 (627)
Q Consensus 95 ~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~ 122 (627)
..+..+.|.||+|+|||||++.++..+.
T Consensus 41 ~~~~~vll~G~~G~GKT~la~~~~~~~~ 68 (187)
T 2p65_A 41 RTKNNPILLGDPGVGKTAIVEGLAIKIV 68 (187)
T ss_dssp SSSCEEEEESCGGGCHHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 3456778999999999999999986653
|
| >2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* | Back alignment and structure |
|---|
Probab=93.33 E-value=0.026 Score=52.14 Aligned_cols=22 Identities=36% Similarity=0.516 Sum_probs=9.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGR 120 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl 120 (627)
.++|+|+.|+|||||++.+.+-
T Consensus 10 ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEECCCCC------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4799999999999999999764
|
| >2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=93.33 E-value=0.043 Score=53.74 Aligned_cols=26 Identities=19% Similarity=0.436 Sum_probs=23.1
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 006897 96 DSEILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 96 ~Ge~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
+|.+++|.|+.||||||+.+.|+..+
T Consensus 1 ~~~~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 1 GPRRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHC
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHc
Confidence 36789999999999999999998665
|
| >3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A | Back alignment and structure |
|---|
Probab=93.32 E-value=0.042 Score=56.61 Aligned_cols=24 Identities=21% Similarity=0.510 Sum_probs=21.6
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 006897 98 EILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 98 e~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
.++.|+||+|||||||.+.|+..+
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 478999999999999999999754
|
| >1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A* | Back alignment and structure |
|---|
Probab=93.26 E-value=0.03 Score=57.40 Aligned_cols=27 Identities=26% Similarity=0.409 Sum_probs=23.2
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCCC
Q 006897 96 DSEILAVVGPSGTGKSSLLRIISGRVR 122 (627)
Q Consensus 96 ~Ge~~aIiGpnGsGKSTLl~~L~Gl~~ 122 (627)
.+..+.|.||+|+|||||++.|++.+.
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~~ 62 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEAK 62 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHH
Confidence 346789999999999999999997653
|
| >2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A* | Back alignment and structure |
|---|
Probab=93.24 E-value=0.034 Score=56.02 Aligned_cols=24 Identities=46% Similarity=0.544 Sum_probs=21.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGRVR 122 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl~~ 122 (627)
.++|+|.+|+|||||++.|.|...
T Consensus 28 ~i~vvG~~~~GKSSLln~l~g~~~ 51 (299)
T 2aka_B 28 QIAVVGGQSAGKSSVLENFVGRDF 51 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSCC
T ss_pred eEEEEeCCCCCHHHHHHHHHCCCc
Confidence 689999999999999999998753
|
| >1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ... | Back alignment and structure |
|---|
Probab=93.24 E-value=0.034 Score=55.33 Aligned_cols=27 Identities=19% Similarity=0.349 Sum_probs=23.7
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 006897 95 RDSEILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 95 ~~Ge~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
+++.+++|.|+.||||||+.+.|+..+
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHhc
Confidence 567899999999999999999998665
|
| >3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A* | Back alignment and structure |
|---|
Probab=93.22 E-value=0.038 Score=54.96 Aligned_cols=23 Identities=35% Similarity=0.550 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
.++|+|++|+|||||++.|.|..
T Consensus 38 ~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 38 TVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp EEEEEECTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57999999999999999999864
|
| >2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* | Back alignment and structure |
|---|
Probab=93.21 E-value=0.035 Score=52.14 Aligned_cols=22 Identities=23% Similarity=0.354 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGR 120 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl 120 (627)
.++|+|+.|+|||||++.+.+-
T Consensus 31 ki~v~G~~~vGKSsLi~~l~~~ 52 (192)
T 2b6h_A 31 RILMVGLDAAGKTTILYKLKLG 52 (192)
T ss_dssp EEEEEESTTSSHHHHHHHHCSS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999753
|
| >2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=93.20 E-value=0.057 Score=52.51 Aligned_cols=33 Identities=15% Similarity=0.201 Sum_probs=26.8
Q ss_pred eeeceE-EEEeCCeEEEEECCCCCcHHHHHHHHH
Q 006897 86 ILKSVS-FEARDSEILAVVGPSGTGKSSLLRIIS 118 (627)
Q Consensus 86 iL~~vs-l~i~~Ge~~aIiGpnGsGKSTLl~~L~ 118 (627)
-||++- .=+++|+++.|.|++|+|||||+.-++
T Consensus 18 ~LD~~l~GGl~~G~l~~i~G~pG~GKT~l~l~~~ 51 (251)
T 2zts_A 18 GFDELIEGGFPEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp TTGGGTTTSEETTCEEEEECCTTSSHHHHHHHHH
T ss_pred HHHHhhcCCCCCCeEEEEEeCCCCCHHHHHHHHH
Confidence 466643 468999999999999999999976543
|
| >2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... | Back alignment and structure |
|---|
Probab=93.15 E-value=0.037 Score=52.29 Aligned_cols=23 Identities=35% Similarity=0.511 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
.++|+|+.|+|||||++.+.+-.
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~~ 49 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLIVFSKDQ 49 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 47899999999999999998753
|
| >2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=93.15 E-value=0.046 Score=52.64 Aligned_cols=22 Identities=36% Similarity=0.676 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGR 120 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl 120 (627)
.++|+|++|+|||||++.+.|.
T Consensus 39 kVvlvG~~~vGKSSLl~r~~~~ 60 (211)
T 2g3y_A 39 RVVLIGEQGVGKSTLANIFAGV 60 (211)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999974
|
| >4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=93.13 E-value=0.024 Score=54.13 Aligned_cols=23 Identities=17% Similarity=0.445 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
.++|+|++|+|||||++.+.|..
T Consensus 13 ki~vvG~~~~GKSsli~~l~~~~ 35 (218)
T 4djt_A 13 KICLIGDGGVGKTTYINRVLDGR 35 (218)
T ss_dssp EEEEECCTTSSHHHHHCBCTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998643
|
| >1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A* | Back alignment and structure |
|---|
Probab=93.05 E-value=0.041 Score=54.95 Aligned_cols=23 Identities=39% Similarity=0.572 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
.++++|++|+|||||++.|.|..
T Consensus 41 ~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 41 TILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999864
|
| >2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=92.98 E-value=0.041 Score=51.36 Aligned_cols=22 Identities=32% Similarity=0.403 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGR 120 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl 120 (627)
.++++|++|+|||||++.+.+-
T Consensus 20 ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999865
|
| >3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=92.92 E-value=0.083 Score=49.29 Aligned_cols=34 Identities=18% Similarity=0.154 Sum_probs=26.8
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHc
Q 006897 85 HILKSVSFEARDSEILAVVGPSGTGKSSLLRIISG 119 (627)
Q Consensus 85 ~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~G 119 (627)
..++..-.. -.|.-+.|.|+||+|||||...|..
T Consensus 5 ~~lHas~v~-v~G~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 5 QTWHANFLV-IDKMGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp EEEESEEEE-ETTEEEEEEESSSSSHHHHHHHHHH
T ss_pred EEEEEEEEE-ECCEEEEEEcCCCCCHHHHHHHHHH
Confidence 456665555 4578899999999999999988864
|
| >3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A | Back alignment and structure |
|---|
Probab=92.91 E-value=0.059 Score=55.10 Aligned_cols=25 Identities=20% Similarity=0.446 Sum_probs=21.8
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCC
Q 006897 97 SEILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 97 Ge~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
..++.|+||+|||||||...|+...
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCccCHHHHHHHHHHhC
Confidence 3578999999999999999998654
|
| >3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A* | Back alignment and structure |
|---|
Probab=92.77 E-value=0.052 Score=54.26 Aligned_cols=25 Identities=28% Similarity=0.530 Sum_probs=22.6
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCCC
Q 006897 98 EILAVVGPSGTGKSSLLRIISGRVR 122 (627)
Q Consensus 98 e~~aIiGpnGsGKSTLl~~L~Gl~~ 122 (627)
-.++++|.+|+|||||+|.|.|...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~ 124 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRA 124 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccc
Confidence 4789999999999999999998754
|
| >3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A* | Back alignment and structure |
|---|
Probab=92.77 E-value=0.059 Score=51.81 Aligned_cols=23 Identities=30% Similarity=0.616 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
++.|+||.||||+|..+.|+-.+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 56799999999999999998543
|
| >1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=92.73 E-value=0.016 Score=59.91 Aligned_cols=36 Identities=19% Similarity=0.378 Sum_probs=26.3
Q ss_pred eeeceEEEEeCC--eEEEEECCCCCcHHHHHHHHHcCC
Q 006897 86 ILKSVSFEARDS--EILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 86 iL~~vsl~i~~G--e~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
+++.+.-.+..| ..+.|.||+|+|||||++.+++.+
T Consensus 45 ~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l 82 (353)
T 1sxj_D 45 AVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKEL 82 (353)
T ss_dssp THHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 334444334444 338999999999999999999765
|
| >2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A* | Back alignment and structure |
|---|
Probab=92.71 E-value=0.049 Score=52.31 Aligned_cols=24 Identities=21% Similarity=0.437 Sum_probs=20.9
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 006897 98 EILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 98 e~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
-.++|+|++|+|||||++-+++-.
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 478999999999999999998653
|
| >3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.70 E-value=0.053 Score=52.14 Aligned_cols=23 Identities=35% Similarity=0.559 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
-++|+|+.|+|||||++.+.+..
T Consensus 15 ki~v~G~~~vGKSsli~~l~~~~ 37 (223)
T 3cpj_B 15 KIVLIGDSGVGKSNLLSRFTKNE 37 (223)
T ss_dssp EEEEESCTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47999999999999999998754
|
| >2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.60 E-value=0.05 Score=51.48 Aligned_cols=23 Identities=22% Similarity=0.404 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
.++|+|+.|+|||||++.+.+..
T Consensus 31 ki~vvG~~~vGKSsli~~l~~~~ 53 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQRFKTGA 53 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhhCC
Confidence 47899999999999999998653
|
| >2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C | Back alignment and structure |
|---|
Probab=92.59 E-value=0.026 Score=53.15 Aligned_cols=22 Identities=36% Similarity=0.649 Sum_probs=4.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGR 120 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl 120 (627)
.++|+|++|+|||||++.+.+.
T Consensus 22 ~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 22 KVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEC-----------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5889999999999999999875
|
| >4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A* | Back alignment and structure |
|---|
Probab=92.56 E-value=0.049 Score=58.94 Aligned_cols=22 Identities=36% Similarity=0.736 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGR 120 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl 120 (627)
.++|+|++|+|||||++.|+|.
T Consensus 25 ~V~lvG~~nvGKSTL~n~l~~~ 46 (456)
T 4dcu_A 25 VVAIVGRPNVGKSTIFNRIAGE 46 (456)
T ss_dssp EEEEECSSSSSHHHHHHHHEEE
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 6899999999999999999885
|
| >2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major} | Back alignment and structure |
|---|
Probab=92.55 E-value=0.036 Score=51.57 Aligned_cols=21 Identities=24% Similarity=0.346 Sum_probs=19.2
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q 006897 99 ILAVVGPSGTGKSSLLRIISG 119 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~G 119 (627)
.++++|++|+|||||++.+.+
T Consensus 24 ~i~v~G~~~~GKssli~~l~~ 44 (189)
T 2x77_A 24 RVLMLGLDNAGKTSILYRLHL 44 (189)
T ss_dssp EEEEEEETTSSHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999999999964
|
| >2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.53 E-value=0.063 Score=52.76 Aligned_cols=27 Identities=22% Similarity=0.449 Sum_probs=22.8
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 006897 95 RDSEILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 95 ~~Ge~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
....-+.|.||+|+|||||.+.++...
T Consensus 37 ~~~~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 445568899999999999999998754
|
| >2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A* | Back alignment and structure |
|---|
Probab=92.41 E-value=0.017 Score=57.51 Aligned_cols=32 Identities=28% Similarity=0.579 Sum_probs=24.8
Q ss_pred eceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 006897 88 KSVSFEARDSEILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 88 ~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
.++......| +.|.||+|+|||||++.|+...
T Consensus 37 ~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~ 68 (268)
T 2r62_A 37 ANLGAKIPKG--VLLVGPPGTGKTLLAKAVAGEA 68 (268)
T ss_dssp HHHSCCCCSC--CCCBCSSCSSHHHHHHHHHHHH
T ss_pred HHCCCCCCce--EEEECCCCCcHHHHHHHHHHHh
Confidence 3444444555 7799999999999999998754
|
| >3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* | Back alignment and structure |
|---|
Probab=92.39 E-value=0.06 Score=51.53 Aligned_cols=22 Identities=27% Similarity=0.560 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGR 120 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl 120 (627)
.++|+|++|+|||||++.+.+-
T Consensus 29 ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 29 KLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5789999999999999999765
|
| >4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A* | Back alignment and structure |
|---|
Probab=92.39 E-value=0.054 Score=51.35 Aligned_cols=22 Identities=32% Similarity=0.385 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGR 120 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl 120 (627)
.++++|++|+|||||++.+.+.
T Consensus 32 ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 32 KCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5789999999999999998754
|
| >3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A* | Back alignment and structure |
|---|
Probab=92.35 E-value=0.066 Score=56.72 Aligned_cols=24 Identities=25% Similarity=0.566 Sum_probs=21.2
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 006897 98 EILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 98 e~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
.+++|+||+|||||||.+.|+-.+
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~ 26 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHHHC
Confidence 478999999999999999998554
|
| >3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli} | Back alignment and structure |
|---|
Probab=92.35 E-value=0.28 Score=61.73 Aligned_cols=139 Identities=14% Similarity=0.102 Sum_probs=73.4
Q ss_pred eeeceEE--EEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCccCCChhhhcccEEEEccCCCCCCCCCH
Q 006897 86 ILKSVSF--EARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKKPAQLRKICGFVAQEDNLLPLLTV 163 (627)
Q Consensus 86 iL~~vsl--~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~~~~~~~~r~~ig~v~Q~~~l~~~lTV 163 (627)
-||.+-. -+++|+++.|.|++|+|||||+..++....... ..-+++.++..... ...+++|.-.++-.+.+..+
T Consensus 719 eLD~llggGGl~~G~lilIaG~PG~GKTtLalqlA~~~a~~g--~~VlyiS~Ees~~q-l~A~rlG~~~~~l~i~~~~~- 794 (2050)
T 3cmu_A 719 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREG--KTCAFIDAEHALDP-IYARKLGVDIDNLLCSQPDT- 794 (2050)
T ss_dssp HHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTTT--CCEEEECTTSCCCH-HHHHHTTCCTTTCEEECCSS-
T ss_pred HHHHHhccCCcCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcC--CcEEEEECCCcHHH-HHHHHcCCCccceEEecCCC-
Confidence 3666664 699999999999999999999999886554321 13456666552221 11122221111001111122
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccc-cCC---cCC-ccc-cCCC--C-CCCHHHHHHHHHHHHHHHHcC
Q 006897 164 KETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHV-AGS---FVG-DEE-NRGI--S-GLDSTSALQVIELLASMAKAK 234 (627)
Q Consensus 164 ~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~---~~g-Ge~-qrPt--s-gLD~~~~~~i~~~L~~l~~~~ 234 (627)
.++..++++++.+..+++-+ .|. ... .+- .+|- + +|-.....++...|+.++++.
T Consensus 795 ----------------i~~i~~~~r~l~~~~~~~LVIIDsLq~i~~~~~~~~~~Gs~~q~La~Reis~ilr~Lk~lAke~ 858 (2050)
T 3cmu_A 795 ----------------GEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQS 858 (2050)
T ss_dssp ----------------HHHHHHHHHHHHHHTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTT
T ss_pred ----------------HHHHHHHHHHHhhccCCCEEEEcchhhhcccccccCCCCchhhHHHHHHHHHHHHHHHHHHHHh
Confidence 23333344444433333211 111 111 000 0110 1 333334566777899999999
Q ss_pred CCEEEEEccC
Q 006897 235 QRTVVLSIHQ 244 (627)
Q Consensus 235 g~Tii~~tH~ 244 (627)
+.+||++.|-
T Consensus 859 ~v~VI~l~Qv 868 (2050)
T 3cmu_A 859 NTLLIFINQI 868 (2050)
T ss_dssp TCEEEEEECC
T ss_pred CCEEEEeccc
Confidence 9999999983
|
| >2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A* | Back alignment and structure |
|---|
Probab=92.32 E-value=0.053 Score=58.40 Aligned_cols=78 Identities=8% Similarity=0.224 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhhee-ecCCeEEeeCCHH--HHHH----HHHhcCCCCCCCCCh
Q 006897 218 TSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLI-LSRGSVVHYGSLE--LLEE----TINNLGYQIPTQLNA 290 (627)
Q Consensus 218 ~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~v-L~~G~iv~~G~~~--~~~~----~~~~~g~~~p~~~~~ 290 (627)
..+..+...+..+.+ .|+.||++||++..++..+.+++.- +..|.++..++++ +..+ .....+...+. +.
T Consensus 211 ~~q~~l~~~l~~l~~-~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~i~~--e~ 287 (440)
T 2z4s_A 211 GVQTELFHTFNELHD-SGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKSIARKMLEIEHGELPE--EV 287 (440)
T ss_dssp HHHHHHHHHHHHHHT-TTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCCHHHHHHHHHHHHHHHTCCCCT--TH
T ss_pred HHHHHHHHHHHHHHH-CCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCH--HH
Confidence 567888899988864 5889999999854322223333333 4567666666543 3322 23334554443 34
Q ss_pred HHHHHHhc
Q 006897 291 IEFAMEIM 298 (627)
Q Consensus 291 ~d~~~~~~ 298 (627)
.+++.+..
T Consensus 288 l~~la~~~ 295 (440)
T 2z4s_A 288 LNFVAENV 295 (440)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHhc
Confidence 55555443
|
| >2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=92.15 E-value=0.06 Score=51.08 Aligned_cols=23 Identities=22% Similarity=0.309 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
.++|+|+.|+|||||++.+.+-.
T Consensus 11 ki~i~G~~~~GKTsli~~l~~~~ 33 (212)
T 2j0v_A 11 KCVTVGDGAVGKTCMLICYTSNK 33 (212)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998643
|
| >3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=92.01 E-value=0.083 Score=47.37 Aligned_cols=28 Identities=21% Similarity=0.243 Sum_probs=23.5
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCC
Q 006897 95 RDSEILAVVGPSGTGKSSLLRIISGRVR 122 (627)
Q Consensus 95 ~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~ 122 (627)
..+.-+.|.||+|+|||++.+.|.....
T Consensus 22 ~~~~~vll~G~~GtGKt~lA~~i~~~~~ 49 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGARYLHQFGR 49 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHHHHHHHSST
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHhCC
Confidence 3456688999999999999999987653
|
| >2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A* | Back alignment and structure |
|---|
Probab=92.01 E-value=0.082 Score=49.73 Aligned_cols=23 Identities=22% Similarity=0.511 Sum_probs=19.6
Q ss_pred CCeEEEEECCCCCcHHHHH-HHHH
Q 006897 96 DSEILAVVGPSGTGKSSLL-RIIS 118 (627)
Q Consensus 96 ~Ge~~aIiGpnGsGKSTLl-~~L~ 118 (627)
+|.+..+.||.|+||||++ +++.
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~~ 25 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFVE 25 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHH
T ss_pred ccEEEEEECCCCCCHHHHHHHHHH
Confidence 4889999999999999997 5543
|
| >2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A* | Back alignment and structure |
|---|
Probab=91.64 E-value=0.11 Score=53.43 Aligned_cols=33 Identities=18% Similarity=0.314 Sum_probs=27.8
Q ss_pred eeceEEEEeCCeEEEEECCCCCcHHHHHHHHHc
Q 006897 87 LKSVSFEARDSEILAVVGPSGTGKSSLLRIISG 119 (627)
Q Consensus 87 L~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~G 119 (627)
|+.+-.-+.+|.++.|.||+|+|||||...++.
T Consensus 113 LD~lLGGi~~gsviLI~GpPGsGKTtLAlqlA~ 145 (331)
T 2vhj_A 113 VAEFGGHRYASGMVIVTGKGNSGKTPLVHALGE 145 (331)
T ss_dssp EEEETTEEEESEEEEEECSCSSSHHHHHHHHHH
T ss_pred HHHHhCCCCCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 444336789999999999999999999999874
|
| >3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=91.55 E-value=0.089 Score=56.54 Aligned_cols=28 Identities=25% Similarity=0.462 Sum_probs=24.7
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCCCC
Q 006897 96 DSEILAVVGPSGTGKSSLLRIISGRVRD 123 (627)
Q Consensus 96 ~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~ 123 (627)
++.+++++|++|+||||++..|+..+..
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~ 126 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQK 126 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHH
Confidence 5789999999999999999999976654
|
| >2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=91.52 E-value=0.094 Score=49.42 Aligned_cols=23 Identities=30% Similarity=0.501 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
.+.|.||.|+|||||++.++..+
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~~ 62 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARDL 62 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 38999999999999999998654
|
| >3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B} | Back alignment and structure |
|---|
Probab=91.47 E-value=0.097 Score=51.19 Aligned_cols=24 Identities=25% Similarity=0.462 Sum_probs=20.6
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 006897 98 EILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 98 e~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
-.+||+|+.||||||+.+.|+-.+
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~~ 32 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEKF 32 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cceeeECCCCCCHHHHHHHHHHHh
Confidence 368999999999999999997543
|
| >4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A* | Back alignment and structure |
|---|
Probab=91.47 E-value=0.11 Score=49.70 Aligned_cols=26 Identities=27% Similarity=0.598 Sum_probs=23.1
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCC
Q 006897 97 SEILAVVGPSGTGKSSLLRIISGRVR 122 (627)
Q Consensus 97 Ge~~aIiGpnGsGKSTLl~~L~Gl~~ 122 (627)
|.+++|=|+-||||||+++.|+-.+.
T Consensus 2 ~kFI~~EG~dGsGKsTq~~~L~~~L~ 27 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTTVINEVYHRLV 27 (205)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHH
Confidence 56889999999999999999987664
|
| >1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=91.27 E-value=0.11 Score=52.49 Aligned_cols=25 Identities=20% Similarity=0.349 Sum_probs=22.2
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCC
Q 006897 97 SEILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 97 Ge~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
+-.++++|.+|+|||||+|.|.|..
T Consensus 120 ~~~v~~vG~~nvGKSsliN~l~~~~ 144 (282)
T 1puj_A 120 AIRALIIGIPNVGKSTLINRLAKKN 144 (282)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CceEEEEecCCCchHHHHHHHhcCc
Confidence 3468999999999999999999865
|
| >2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=91.26 E-value=0.081 Score=54.94 Aligned_cols=27 Identities=26% Similarity=0.481 Sum_probs=23.7
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 006897 95 RDSEILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 95 ~~Ge~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
..+..+.|.||+|+|||||++.++...
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~ 68 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRL 68 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 456789999999999999999998655
|
| >3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A* | Back alignment and structure |
|---|
Probab=91.04 E-value=0.11 Score=52.44 Aligned_cols=27 Identities=22% Similarity=0.417 Sum_probs=23.0
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 006897 95 RDSEILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 95 ~~Ge~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
.++.-+.|.||+|+|||||.+.++..+
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 345578999999999999999998665
|
| >3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A* | Back alignment and structure |
|---|
Probab=91.02 E-value=0.12 Score=52.74 Aligned_cols=24 Identities=42% Similarity=0.573 Sum_probs=21.0
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcC
Q 006897 97 SEILAVVGPSGTGKSSLLRIISGR 120 (627)
Q Consensus 97 Ge~~aIiGpnGsGKSTLl~~L~Gl 120 (627)
+-.++|+|++|+|||||++.+.+-
T Consensus 3 ~~KI~lvG~~~vGKSSLi~~l~~~ 26 (307)
T 3r7w_A 3 GSKLLLMGRSGSGKSSMRSIIFSN 26 (307)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 345899999999999999998875
|
| >3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=90.38 E-value=0.042 Score=51.91 Aligned_cols=22 Identities=32% Similarity=0.385 Sum_probs=19.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGR 120 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl 120 (627)
.++|+|++|+|||||++.+.+-
T Consensus 32 ki~v~G~~~~GKSsli~~l~~~ 53 (204)
T 3th5_A 32 KCVVVGDGAVGKTCLLISYTTN 53 (204)
Confidence 5899999999999999988753
|
| >3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ... | Back alignment and structure |
|---|
Probab=90.98 E-value=0.078 Score=50.76 Aligned_cols=22 Identities=36% Similarity=0.770 Sum_probs=18.8
Q ss_pred EEEEECCCCCcHHHHHHH-HHcC
Q 006897 99 ILAVVGPSGTGKSSLLRI-ISGR 120 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~-L~Gl 120 (627)
.++|+|++|+|||||++. +.|.
T Consensus 17 ki~v~G~~~~GKSsli~~~~~~~ 39 (221)
T 3gj0_A 17 KLVLVGDGGTGKTTFVKRHLTGE 39 (221)
T ss_dssp EEEEEECTTSSHHHHHTTBHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 378999999999999998 5554
|
| >1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=90.95 E-value=0.1 Score=55.49 Aligned_cols=23 Identities=26% Similarity=0.322 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
.++|+|.+++|||||++.|+|..
T Consensus 2 kI~ivG~pnvGKSTL~n~L~~~~ 24 (397)
T 1wxq_A 2 EIGVVGKPNVGKSTFFSAATLVD 24 (397)
T ss_dssp EEEEEECTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 37899999999999999999864
|
| >3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A* | Back alignment and structure |
|---|
Probab=90.92 E-value=0.12 Score=53.82 Aligned_cols=27 Identities=19% Similarity=0.407 Sum_probs=23.3
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCCC
Q 006897 96 DSEILAVVGPSGTGKSSLLRIISGRVR 122 (627)
Q Consensus 96 ~Ge~~aIiGpnGsGKSTLl~~L~Gl~~ 122 (627)
..-+++|+|+.|+|||||++.|++.+.
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~l~ 104 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMHLI 104 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 456899999999999999999987653
|
| >2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A | Back alignment and structure |
|---|
Probab=90.85 E-value=0.078 Score=55.24 Aligned_cols=23 Identities=48% Similarity=0.614 Sum_probs=21.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
.++|+|..|+|||||++.|.|..
T Consensus 33 ~I~vvG~~~~GKSSLln~L~g~~ 55 (353)
T 2x2e_A 33 QIAVVGGQSAGKSSVLENFVGRD 55 (353)
T ss_dssp EEEEECBTTSSHHHHHHTTTTSC
T ss_pred eEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999964
|
| >2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=90.84 E-value=0.1 Score=56.12 Aligned_cols=23 Identities=35% Similarity=0.676 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
.++|+|++|+|||||++.|+|..
T Consensus 5 ~V~ivG~~nvGKStL~n~l~~~~ 27 (436)
T 2hjg_A 5 VVAIVGRPNVGKSTIFNRIAGER 27 (436)
T ss_dssp EEEEECSTTSSHHHHHHHHEEEE
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999998853
|
| >1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A* | Back alignment and structure |
|---|
Probab=90.78 E-value=0.13 Score=51.23 Aligned_cols=26 Identities=23% Similarity=0.331 Sum_probs=22.3
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcC
Q 006897 95 RDSEILAVVGPSGTGKSSLLRIISGR 120 (627)
Q Consensus 95 ~~Ge~~aIiGpnGsGKSTLl~~L~Gl 120 (627)
.+..-+.|.||+|+|||||.+.++..
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 34557889999999999999999865
|
| >3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=90.73 E-value=0.028 Score=52.95 Aligned_cols=23 Identities=39% Similarity=0.547 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
.++|+|++|+|||||++.+.+..
T Consensus 35 ki~vvG~~~~GKSsli~~l~~~~ 57 (199)
T 3l0i_B 35 KLLLIGDSGVGKSCLLLRFADDT 57 (199)
T ss_dssp EEEEECCTTSCCTTTTTSSBCCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998653
|
| >2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3} | Back alignment and structure |
|---|
Probab=90.67 E-value=0.14 Score=52.29 Aligned_cols=25 Identities=32% Similarity=0.414 Sum_probs=22.4
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCC
Q 006897 97 SEILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 97 Ge~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
+.-+.|.||+|+|||+|+++|+...
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~ 176 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHEL 176 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHH
Confidence 6789999999999999999998654
|
| >1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=90.50 E-value=0.14 Score=52.55 Aligned_cols=27 Identities=30% Similarity=0.461 Sum_probs=23.5
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 006897 95 RDSEILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 95 ~~Ge~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
.+..-+.|.||+|+|||||.+.++...
T Consensus 43 ~~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 43 TPWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCccHHHHHHHHHHHc
Confidence 455678899999999999999999765
|
| >3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus} | Back alignment and structure |
|---|
Probab=90.46 E-value=0.12 Score=54.42 Aligned_cols=25 Identities=28% Similarity=0.379 Sum_probs=22.6
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcC
Q 006897 96 DSEILAVVGPSGTGKSSLLRIISGR 120 (627)
Q Consensus 96 ~Ge~~aIiGpnGsGKSTLl~~L~Gl 120 (627)
++..++++|++|+|||||+|.|.|.
T Consensus 161 ~~~~i~~vG~~nvGKStliN~L~~~ 185 (369)
T 3ec1_A 161 EGGDVYVVGCTNVGKSTFINRIIEE 185 (369)
T ss_dssp TTSCEEEECCTTSSHHHHHHHHHHH
T ss_pred ccCcEEEEcCCCCchHHHHHHHHhh
Confidence 4567999999999999999999986
|
| >1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8 | Back alignment and structure |
|---|
Probab=90.37 E-value=0.14 Score=53.26 Aligned_cols=33 Identities=27% Similarity=0.423 Sum_probs=27.1
Q ss_pred eceEEEEeCCeEEEEECCCCCcHHHHHHHHHcC
Q 006897 88 KSVSFEARDSEILAVVGPSGTGKSSLLRIISGR 120 (627)
Q Consensus 88 ~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl 120 (627)
..+.++++----++|+|.+++|||||++.|++.
T Consensus 149 ~~~~leLk~la~V~lvG~~nvGKSTLln~L~~~ 181 (342)
T 1lnz_A 149 RYIVLELKVLADVGLVGFPSVGKSTLLSVVSSA 181 (342)
T ss_dssp EEEEEEEECCCCEEEESSTTSSHHHHHHHSEEE
T ss_pred hhHhhhhhhcCeeeeeCCCCCCHHHHHHHHHcC
Confidence 556666666556899999999999999999864
|
| >2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B | Back alignment and structure |
|---|
Probab=90.29 E-value=0.089 Score=56.52 Aligned_cols=25 Identities=20% Similarity=0.486 Sum_probs=23.0
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCCC
Q 006897 98 EILAVVGPSGTGKSSLLRIISGRVR 122 (627)
Q Consensus 98 e~~aIiGpnGsGKSTLl~~L~Gl~~ 122 (627)
.+++|+|++|+||||+...|++.+.
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l~ 124 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYIQ 124 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5999999999999999999998765
|
| >1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A* | Back alignment and structure |
|---|
Probab=90.28 E-value=0.15 Score=57.14 Aligned_cols=26 Identities=19% Similarity=0.289 Sum_probs=23.2
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 006897 96 DSEILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 96 ~Ge~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
+|.++.|+|.+||||||+.+.|+-.+
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L 76 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYL 76 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence 46789999999999999999998665
|
| >3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP} | Back alignment and structure |
|---|
Probab=90.23 E-value=0.11 Score=56.41 Aligned_cols=25 Identities=40% Similarity=0.449 Sum_probs=21.9
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcC
Q 006897 96 DSEILAVVGPSGTGKSSLLRIISGR 120 (627)
Q Consensus 96 ~Ge~~aIiGpnGsGKSTLl~~L~Gl 120 (627)
+|=.++|+|++|+|||||++.|+|.
T Consensus 223 ~~~kV~ivG~~nvGKSSLln~L~~~ 247 (462)
T 3geh_A 223 TGLKVAIVGRPNVGKSSLLNAWSQS 247 (462)
T ss_dssp HCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 3445999999999999999999885
|
| >2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* | Back alignment and structure |
|---|
Probab=90.18 E-value=0.091 Score=60.76 Aligned_cols=28 Identities=21% Similarity=0.369 Sum_probs=24.2
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 006897 94 ARDSEILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 94 i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
++.|+.+.|+||+||||||++.++.+..
T Consensus 106 l~~~~~vii~gpTGSGKTtllp~ll~~~ 133 (773)
T 2xau_A 106 YQNNQIMVFVGETGSGKTTQIPQFVLFD 133 (773)
T ss_dssp HHHCSEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HhCCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 4678999999999999999999886543
|
| >3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A | Back alignment and structure |
|---|
Probab=90.17 E-value=0.13 Score=52.02 Aligned_cols=26 Identities=27% Similarity=0.364 Sum_probs=21.8
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 006897 96 DSEILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 96 ~Ge~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
+...+.|.||+|+|||+|.+.|+..+
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 33467788999999999999999655
|
| >1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A* | Back alignment and structure |
|---|
Probab=90.14 E-value=0.14 Score=56.07 Aligned_cols=28 Identities=4% Similarity=-0.018 Sum_probs=25.1
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCC
Q 006897 95 RDSEILAVVGPSGTGKSSLLRIISGRVR 122 (627)
Q Consensus 95 ~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~ 122 (627)
+.|-.+.|+|.+||||||+-+.|+..+.
T Consensus 393 ~~~~~I~l~GlsGsGKSTIa~~La~~L~ 420 (511)
T 1g8f_A 393 KQGFSIVLGNSLTVSREQLSIALLSTFL 420 (511)
T ss_dssp GCCEEEEECTTCCSCHHHHHHHHHHHHT
T ss_pred ccceEEEecccCCCCHHHHHHHHHHHHH
Confidence 5678999999999999999999987764
|
| >1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A* | Back alignment and structure |
|---|
Probab=90.04 E-value=0.15 Score=51.37 Aligned_cols=25 Identities=24% Similarity=0.581 Sum_probs=21.8
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCC
Q 006897 97 SEILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 97 Ge~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
+.-+.|.||+|+|||||.+.++..+
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~l 74 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKLA 74 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh
Confidence 4467899999999999999998765
|
| >1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A* | Back alignment and structure |
|---|
Probab=90.03 E-value=0.15 Score=56.71 Aligned_cols=27 Identities=15% Similarity=0.262 Sum_probs=23.6
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 006897 95 RDSEILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 95 ~~Ge~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
+.|-++.|.|++||||||+.+.|+-.+
T Consensus 394 q~~~~I~l~GlsGSGKSTiA~~La~~L 420 (573)
T 1m8p_A 394 TQGFTIFLTGYMNSGKDAIARALQVTL 420 (573)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccceEEEeecCCCCCHHHHHHHHHHHh
Confidence 456789999999999999999998654
|
| >1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A* | Back alignment and structure |
|---|
Probab=90.01 E-value=0.12 Score=57.57 Aligned_cols=34 Identities=32% Similarity=0.552 Sum_probs=26.7
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 006897 85 HILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 85 ~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
.+|.+++ .+--.++|+|+.|+|||||+|.|.|..
T Consensus 29 ~~L~~i~---~~~~~VaivG~pnvGKStLiN~L~g~~ 62 (592)
T 1f5n_A 29 KILSAIT---QPMVVVAIVGLYRTGKSYLMNKLAGKK 62 (592)
T ss_dssp HHHHTCC---SBEEEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred HHHHhcc---CCCcEEEEECCCCCCHHHHHHhHcCCC
Confidence 3566642 234578999999999999999999974
|
| >3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D* | Back alignment and structure |
|---|
Probab=89.98 E-value=0.15 Score=52.85 Aligned_cols=28 Identities=18% Similarity=0.330 Sum_probs=24.6
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCC
Q 006897 95 RDSEILAVVGPSGTGKSSLLRIISGRVR 122 (627)
Q Consensus 95 ~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~ 122 (627)
.+|..+.|.||+|+|||||.+.++..+.
T Consensus 68 ~~~~~vLl~GppGtGKT~la~~la~~l~ 95 (368)
T 3uk6_A 68 IAGRAVLIAGQPGTGKTAIAMGMAQALG 95 (368)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4567899999999999999999997764
|
| >2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=89.95 E-value=0.13 Score=56.99 Aligned_cols=24 Identities=25% Similarity=0.447 Sum_probs=22.0
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 006897 98 EILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 98 e~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
-.++|+|..|+|||||+|.|.|..
T Consensus 66 ~~V~vvG~~n~GKSTLIN~Llg~~ 89 (550)
T 2qpt_A 66 PMVLVAGQYSTGKTSFIQYLLEQE 89 (550)
T ss_dssp CEEEEEEBTTSCHHHHHHHHHTSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCc
Confidence 479999999999999999999864
|
| >3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A | Back alignment and structure |
|---|
Probab=89.91 E-value=0.15 Score=53.17 Aligned_cols=26 Identities=23% Similarity=0.542 Sum_probs=22.5
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 006897 96 DSEILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 96 ~Ge~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
++.-+.|.||+|+||||+.+.|+..+
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLL 75 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 44568899999999999999999765
|
| >3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C | Back alignment and structure |
|---|
Probab=89.89 E-value=0.17 Score=51.78 Aligned_cols=27 Identities=30% Similarity=0.539 Sum_probs=22.9
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 006897 95 RDSEILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 95 ~~Ge~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
.+..-+.|.||+|+|||+|.+.++...
T Consensus 49 ~~~~~vLl~GppGtGKT~la~aia~~~ 75 (322)
T 3eie_A 49 KPTSGILLYGPPGTGKSYLAKAVATEA 75 (322)
T ss_dssp CCCCEEEEECSSSSCHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHH
Confidence 345568999999999999999998654
|
| >3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=89.78 E-value=0.17 Score=52.65 Aligned_cols=27 Identities=26% Similarity=0.468 Sum_probs=23.3
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 006897 95 RDSEILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 95 ~~Ge~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
.+..-+.|.||+|+|||||++.|+...
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 456678999999999999999998754
|
| >3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=89.78 E-value=0.096 Score=56.55 Aligned_cols=33 Identities=24% Similarity=0.493 Sum_probs=25.4
Q ss_pred ceEEEEeCCeE--EEEECCCCCcHHHHHHHHHcCC
Q 006897 89 SVSFEARDSEI--LAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 89 ~vsl~i~~Ge~--~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
.+.-.++.|++ +.|.||+|+|||||.++|+...
T Consensus 40 ~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~ 74 (447)
T 3pvs_A 40 PLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYA 74 (447)
T ss_dssp HHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHh
Confidence 33334445554 8899999999999999999765
|
| >2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=89.70 E-value=0.17 Score=52.73 Aligned_cols=26 Identities=23% Similarity=0.250 Sum_probs=22.7
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 006897 96 DSEILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 96 ~Ge~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
.+..+.|.||+|+|||||++.++..+
T Consensus 44 ~~~~vll~G~~G~GKT~la~~l~~~~ 69 (384)
T 2qby_B 44 VKFSNLFLGLTGTGKTFVSKYIFNEI 69 (384)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 35689999999999999999998654
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 627 | ||||
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 1e-25 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 2e-23 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 3e-23 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 4e-23 | |
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 4e-22 | |
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 8e-22 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 1e-20 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 5e-20 | |
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 6e-20 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 1e-19 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 2e-19 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 6e-19 | |
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 2e-18 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 4e-18 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 1e-17 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 2e-17 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 5e-17 | |
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 2e-16 | |
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 2e-16 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 7e-15 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 6e-07 | |
| d2i3ba1 | 189 | c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 | 3e-04 |
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 103 bits (259), Expect = 1e-25
Identities = 40/217 (18%), Positives = 78/217 (35%), Gaps = 42/217 (19%)
Query: 84 LHILKSVSFEARDSEILAVVGPSGTGKSSLLRII-------SGRVRDQDFDPRSITVNCH 136
+ ++ +D E L ++GPSG GK++ LR+I GR+ D D +
Sbjct: 19 FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDR 78
Query: 137 QIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGL 196
I V Q + P +TV E + F ++K E + RV + L +
Sbjct: 79 NI----------SMVFQSYAVWPHMTVYENIAFPL--KIKKFPKDEIDKRVRWAAELLQI 126
Query: 197 THVAGSFV----GDEENR------------------GISGLDSTSALQVIELLASMAKAK 234
+ + G + R +S LD+ + + + + +
Sbjct: 127 EELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKL 186
Query: 235 QRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGSLE 271
+ T + H + + +++RG ++ GS
Sbjct: 187 KVTTIYVTHDQVE-AMTMGDRIAVMNRGQLLQIGSPT 222
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 98.0 bits (244), Expect = 2e-23
Identities = 47/223 (21%), Positives = 90/223 (40%), Gaps = 38/223 (17%)
Query: 84 LHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISG---------RVRDQDFD---PRSI 131
+LK VS +AR ++++++G SG+GKS+ LR I+ V Q+ + +
Sbjct: 15 HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDG 74
Query: 132 TVNCHQIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLM 191
+ + LR V Q NL +TV E +M A ++ G+S + +R +
Sbjct: 75 QLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVME-APIQVLGLSKHDARERALKYL 133
Query: 192 DELGLTHVAGSFVGDEENRG-----------------------ISGLDSTSALQVIELLA 228
++G+ A + G S LD +V+ ++
Sbjct: 134 AKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQ 193
Query: 229 SMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGSLE 271
+A+ + +T+V+ H+ + S + L +G + G E
Sbjct: 194 QLAE-EGKTMVVVTHEMGF-ARHVSSHVIFLHQGKIEEEGDPE 234
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 96.9 bits (241), Expect = 3e-23
Identities = 46/226 (20%), Positives = 89/226 (39%), Gaps = 33/226 (14%)
Query: 73 LSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSIT 132
++ + H+ + L +VS +I V+G SG GKS+L+R ++ R S+
Sbjct: 7 ITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER---PTEGSVL 63
Query: 133 VNCHQI-----KKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRV 187
V+ ++ + + R+ G + Q NLL TV + L E + RV
Sbjct: 64 VDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPL--ELDNTPKDEVKRRV 121
Query: 188 ESLMDELGLTHVAGSFV----GDEENRG------------------ISGLDSTSALQVIE 225
L+ +GL S+ G ++ R S LD + ++E
Sbjct: 122 TELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILE 181
Query: 226 LLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGSLE 271
LL + + T++L H+ + + ++S G ++ ++
Sbjct: 182 LLKDINRRLGLTILLITHEMDV-VKRICDCVAVISNGELIEQDTVS 226
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 96.5 bits (240), Expect = 4e-23
Identities = 45/260 (17%), Positives = 97/260 (37%), Gaps = 49/260 (18%)
Query: 45 SLPPQRLKTTCKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVG 104
L P L+ V +++S+A + + + +L+ ++F R E+ A+VG
Sbjct: 2 LLTPLHLEG--LVQFQDVSFA------------YPNRPDVLVLQGLTFTLRPGEVTALVG 47
Query: 105 PSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKK--PAQLRKICGFVAQEDNLLPLLT 162
P+G+GKS++ ++ + ++ + + L + V QE + +
Sbjct: 48 PNGSGKSTVAALLQNLY---QPTGGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFG-RS 103
Query: 163 VKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAGSFVGDEE-------------- 208
++E + + + + + GL + V +
Sbjct: 104 LQENIAYGLTQKPTMEEITAAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALA 163
Query: 209 ------------NRGISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKF 256
+ S LD+ S LQV +LL + R+V+L S +++
Sbjct: 164 RALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLS--LVEQADHI 221
Query: 257 LILSRGSVVHYGS-LELLEE 275
L L G++ G+ +L+E+
Sbjct: 222 LFLEGGAIREGGTHQQLMEK 241
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 93.4 bits (232), Expect = 4e-22
Identities = 51/229 (22%), Positives = 94/229 (41%), Gaps = 37/229 (16%)
Query: 73 LSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRII-------SGRVRDQD 125
++ + ++ LK+V+ ++ E ++++GPSG+GKS++L II G V
Sbjct: 7 VTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVY--- 63
Query: 126 FDPRSITVNCHQIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLK-GMSHKEKE 184
D + + R GFV Q+ NL+PLLT E + F+ + MS +E+
Sbjct: 64 IDNIKTN-DLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERR 122
Query: 185 DRVESLMDELGL-----THVAGSFVGDEENRG------------------ISGLDSTSAL 221
R + L H G ++ R LDS +
Sbjct: 123 KRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGE 182
Query: 222 QVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGSL 270
++++LL + + +TVV+ H + + ++ + + L G V L
Sbjct: 183 KIMQLLKKLNEEDGKTVVVVTHDIN--VARFGERIIYLKDGEVEREEKL 229
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 92.7 bits (230), Expect = 8e-22
Identities = 54/222 (24%), Positives = 96/222 (43%), Gaps = 36/222 (16%)
Query: 84 LHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVN-CHQIKKPA 142
ILK +SFE + EI ++GP+G GK++ LRIIS ++ +TV + +++P
Sbjct: 15 KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIK---PSSGIVTVFGKNVVEEPH 71
Query: 143 QLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAGS 202
++RK+ ++ +E + E L F A S E E+ VE + GL
Sbjct: 72 EVRKLISYLPEEAGAYRNMQGIEYLRFVA--GFYASSSSEIEEMVERATEIAGLGEKIKD 129
Query: 203 FVG-------------------------DEENRGISGLDSTSALQVIELLASMAKAKQRT 237
V DE SGLD +A +V ++L ++ + T
Sbjct: 130 RVSTYSKGMVRKLLIARALMVNPRLAILDE---PTSGLDVLNAREVRKILKQASQ-EGLT 185
Query: 238 VVLSIHQPSYRILQYISKFLILSRGSVVHYGSLELLEETINN 279
+++S H + + ++ G++V G++E L+E
Sbjct: 186 ILVSSHNML-EVEFLCDRIALIHNGTIVETGTVEELKERYKA 226
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 88.9 bits (220), Expect = 1e-20
Identities = 46/210 (21%), Positives = 81/210 (38%), Gaps = 28/210 (13%)
Query: 84 LHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKKPAQ 143
+ + K ++ + + E + VGPSG GKS+LLR+I+G + + ++
Sbjct: 13 VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLET---ITSGDLFIGEKRMNDTPP 69
Query: 144 LRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAGSF 203
+ G V Q L P L+V E + F +L G + RV + + L L H+
Sbjct: 70 AERGVGMVFQSYALYPHLSVAENMSFGL--KLAGAKKEVINQRVNQVAEVLQLAHLLDRK 127
Query: 204 V----GDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLS 241
G + R +S LD+ +Q+ ++ + K RT++
Sbjct: 128 PKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYV 187
Query: 242 IHQPSYRILQYISKFLILSRGSVVHYGSLE 271
H + K ++L G V G
Sbjct: 188 THDQVE-AMTLADKIVVLDAGRVAQVGKPL 216
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 87.0 bits (215), Expect = 5e-20
Identities = 40/209 (19%), Positives = 76/209 (36%), Gaps = 31/209 (14%)
Query: 85 HILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKKPAQL 144
L ++S + E ++GP+G GK+ L +I+G D I ++ + +
Sbjct: 14 FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHV---PDSGRILLDGKDVTDLSPE 70
Query: 145 RKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAGSF- 203
+ FV Q +L P + VK+ L F M + RV +L + H+
Sbjct: 71 KHDIAFVYQNYSLFPHMNVKKNLEFGMR-----MKKIKDPKRVLDTARDLKIEHLLDRNP 125
Query: 204 -----------------VGDEENRGI----SGLDSTSALQVIELLASMAKAKQRTVVLSI 242
V + + + S LD + E+L+ + K + TV+
Sbjct: 126 LTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHIT 185
Query: 243 HQPSYRILQYISKFLILSRGSVVHYGSLE 271
H + + ++ G ++ G E
Sbjct: 186 HDQTE-ARIMADRIAVVMDGKLIQVGKPE 213
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 87.7 bits (217), Expect = 6e-20
Identities = 39/230 (16%), Positives = 86/230 (37%), Gaps = 36/230 (15%)
Query: 84 LHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKKPAQ 143
L VS ++ ++GP+G+GKS+L+ +I+G ++ + + +
Sbjct: 17 FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAEL 76
Query: 144 LRKICGFVAQEDNLLPLLTVKETLMF-----------SANFRLKGMSHKEKEDRVESLMD 192
Q L +TV E L+ S ++ +E ++ +++
Sbjct: 77 YHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILE 136
Query: 193 ELGLTHVAGSFVGD---------EENRGI-------------SGLDSTSALQVIELLASM 230
L L+H+ G+ E R + +G+ A + + +
Sbjct: 137 FLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLEL 196
Query: 231 AKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGSL-ELLEETINN 279
KAK T ++ H+ +L YI ++ G ++ G E ++ +++
Sbjct: 197 -KAKGITFLIIEHRLD-IVLNYIDHLYVMFNGQIIAEGRGEEEIKNVLSD 244
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 86.1 bits (213), Expect = 1e-19
Identities = 42/216 (19%), Positives = 87/216 (40%), Gaps = 34/216 (15%)
Query: 84 LHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKKPAQ 143
+ ++ +S E +D E + ++GPSG GK++ LR+I+G I + + P +
Sbjct: 16 VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEE---PSRGQIYIGDKLVADPEK 72
Query: 144 LRKI------CGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLT 197
+ V Q L P +TV + + F +L+ + +E + RV + + LGLT
Sbjct: 73 GIFVPPKDRDIAMVFQSYALYPHMTVYDNIAF--PLKLRKVPRQEIDQRVREVAELLGLT 130
Query: 198 H------------------VAGSFVGDEE----NRGISGLDSTSALQVIELLASMAKAKQ 235
+ + V + + +S LD+ +++ L + +
Sbjct: 131 ELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLG 190
Query: 236 RTVVLSIHQPSYRILQYISKFLILSRGSVVHYGSLE 271
T + H + + +++RG + GS +
Sbjct: 191 VTTIYVTHDQVE-AMTMGDRIAVMNRGVLQQVGSPD 225
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 86.1 bits (213), Expect = 2e-19
Identities = 43/208 (20%), Positives = 74/208 (35%), Gaps = 22/208 (10%)
Query: 84 LHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKKPAQ 143
+H +K + + +I+ ++G +G GK++ L I+G VR Q +
Sbjct: 19 IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVI 78
Query: 144 LRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELG--LTHVAG 201
R V + + P LTV E LM A R K + + SL L L + G
Sbjct: 79 NRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGG 138
Query: 202 SFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIH 243
+ G E+ GL +V E++ + + + T++L
Sbjct: 139 TLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQ-EGTTILLVEQ 197
Query: 244 QPSYRILQYISKFLILSRGSVVHYGSLE 271
L+ +L G +V G
Sbjct: 198 NAL-GALKVAHYGYVLETGQIVLEGKAS 224
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 84.5 bits (209), Expect = 6e-19
Identities = 49/255 (19%), Positives = 96/255 (37%), Gaps = 62/255 (24%)
Query: 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLR 115
+ RN+++ L++++ + + +A+VG SG+GKS++
Sbjct: 13 DLEFRNVTFTYPGREV-------------PALRNINLKIPAGKTVALVGRSGSGKSTIAS 59
Query: 116 IISGRVRDQDFDPRSITVNCHQIKK--PAQLRKICGFVAQEDNLLPLLTVKETLMFSANF 173
+I+ D D I ++ H +++ A LR V+Q +L
Sbjct: 60 LITRFY---DIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAY----A 112
Query: 174 RLKGMSHKEKED--RVESLMDEL-----GLTHVAGS------------------------ 202
R + S ++ E+ R+ MD + GL + G
Sbjct: 113 RTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSP 172
Query: 203 -FVGDEENRGISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSR 261
+ DE S LD+ S + L + K RT ++ H+ S ++ + +++
Sbjct: 173 ILILDE---ATSALDTESERAIQAALDEL--QKNRTSLVIAHRLS--TIEQADEIVVVED 225
Query: 262 GSVVHYGS-LELLEE 275
G +V G+ ELL +
Sbjct: 226 GIIVERGTHSELLAQ 240
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 81.5 bits (201), Expect = 2e-18
Identities = 29/184 (15%), Positives = 69/184 (37%), Gaps = 31/184 (16%)
Query: 85 HILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKKPAQL 144
+L+ ++ ++ GP+G GK++LL+ IS ++ I N I K +
Sbjct: 15 PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLK---PLKGEIIYNGVPITK---V 68
Query: 145 RKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAGSF- 203
+ F+ +E + ++V++ L A+ K ++ + ++ + + +
Sbjct: 69 KGKIFFLPEEIIVPRKISVEDYLKAVASLY----GVKVNKNEIMDALESVEVLDLKKKLG 124
Query: 204 ---VGDEENRGI-----------------SGLDSTSALQVIELLASMAKAKQRTVVLSIH 243
G + +D S +V++ + + K K ++ S
Sbjct: 125 ELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSRE 184
Query: 244 QPSY 247
+ SY
Sbjct: 185 ELSY 188
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 81.5 bits (201), Expect = 4e-18
Identities = 38/218 (17%), Positives = 77/218 (35%), Gaps = 44/218 (20%)
Query: 85 HILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKK--PA 142
L +S E R EIL +VGP+G GKS+LL ++G + SI ++
Sbjct: 13 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGKG----SIQFAGQPLEAWSAT 68
Query: 143 QLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAGS 202
+L +++Q+ V L K + + + + L L G
Sbjct: 69 KLALHRAYLSQQQTPPFATPVWHYLTL-------HQHDKTRTELLNDVAGALALDDKLGR 121
Query: 203 FVGDEE-----------------------------NRGISGLDSTSALQVIELLASMAKA 233
+ ++ LD + ++L+++ +
Sbjct: 122 STNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQ- 180
Query: 234 KQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGSLE 271
+ +V+S H ++ L++ + +L G ++ G E
Sbjct: 181 QGLAIVMSSHDLNH-TLRHAHRAWLLKGGKMLASGRRE 217
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 80.5 bits (198), Expect = 1e-17
Identities = 58/245 (23%), Positives = 90/245 (36%), Gaps = 50/245 (20%)
Query: 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLR 115
++ V+N+S + + L +V+ + E ++GPSG GK++ +R
Sbjct: 3 RIIVKNVSKVFKKGK-------------VVALDNVNINIENGERFGILGPSGAGKTTFMR 49
Query: 116 IISGRVRDQD----FDPRSITVNCHQIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSA 171
II+G FD R + N I P RKI G V Q L P LT E + F
Sbjct: 50 IIAGLDVPSTGELYFDDRLVASNGKLIVPPED-RKI-GMVFQTWALYPNLTAFENIAFPL 107
Query: 172 NFRLKGMSHKEKEDRVESLMDELGLTHVAG-------------------------SFVGD 206
MS +E RVE + L + HV + D
Sbjct: 108 --TNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLD 165
Query: 207 EENRGISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVH 266
E S LD+ L+ + T+++ H P+ I + +L +G +V
Sbjct: 166 E---PFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPAD-IFAIADRVGVLVKGKLVQ 221
Query: 267 YGSLE 271
G E
Sbjct: 222 VGKPE 226
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 80.0 bits (197), Expect = 2e-17
Identities = 48/246 (19%), Positives = 103/246 (41%), Gaps = 47/246 (19%)
Query: 57 VTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRI 116
+T RN+ + +P++ + IL +++ + E++ +VG SG+GKS+L ++
Sbjct: 2 ITFRNIRFRYKPDSPV-------------ILDNINLSIKQGEVIGIVGRSGSGKSTLTKL 48
Query: 117 ISGRVRDQDFDPRSITVNCHQIKK--PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFR 174
I R + + ++ H + P LR+ G V Q++ LL + + +
Sbjct: 49 IQ---RFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMS 105
Query: 175 LKGMSHKEKEDRVESLMDELGLTH--------------------VAGSFVGDEE----NR 210
++ + + K + EL + +A + V + + +
Sbjct: 106 VEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDE 165
Query: 211 GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGS- 269
S LD S ++ + + K RTV++ H+ S ++ + +++ +G +V G
Sbjct: 166 ATSALDYESEHVIMRNMHKI--CKGRTVIIIAHRLS--TVKNADRIIVMEKGKIVEQGKH 221
Query: 270 LELLEE 275
ELL E
Sbjct: 222 KELLSE 227
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 78.5 bits (193), Expect = 5e-17
Identities = 40/205 (19%), Positives = 78/205 (38%), Gaps = 31/205 (15%)
Query: 89 SVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKKPAQLRKIC 148
+V FE + ++GP+G GKS L +I+G V+ D + +N I R+
Sbjct: 17 NVDFEM-GRDYCVLLGPTGAGKSVFLELIAGIVK---PDRGEVRLNGADITPLPPERRGI 72
Query: 149 GFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAGSFVGDEE 208
GFV Q+ L P L+V + + + E++ RV + ++LG+ H+
Sbjct: 73 GFVPQDYALFPHLSVYRNIAYGLRN----VERVERDRRVREMAEKLGIAHLLDRKPARLS 128
Query: 209 ----------------------NRGISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPS 246
+ +S +D + ++E L + + ++ H
Sbjct: 129 GGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLI 188
Query: 247 YRILQYISKFLILSRGSVVHYGSLE 271
+ ++ G +V G L+
Sbjct: 189 E-AAMLADEVAVMLNGRIVEKGKLK 212
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 77.1 bits (190), Expect = 2e-16
Identities = 56/255 (21%), Positives = 98/255 (38%), Gaps = 63/255 (24%)
Query: 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLR 115
++ + ++S+ N + ILK ++ E +A VG SG GKS+L+
Sbjct: 16 RIDIDHVSFQYNDNEA-------------PILKDINLSIEKGETVAFVGMSGGGKSTLIN 62
Query: 116 IISGRVRDQDFDPRSITVNCHQIKK--PAQLRKICGFVAQEDNLLPLLTVKETLMFSANF 173
+I D I ++ H IK LR G V Q+DN+L TVKE ++
Sbjct: 63 LIPRFY---DVTSGQILIDGHNIKDFLTGSLRNQIGLV-QQDNILFSDTVKENILLG--- 115
Query: 174 RLKGMSHKEKED--RVESLMDEL-----GLTHVAGS------------------------ 202
+ +E + ++ + D + G G
Sbjct: 116 -RPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPP 174
Query: 203 -FVGDEENRGISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSR 261
+ DE S LD S + E L + +K RT ++ H+ S + + K +++
Sbjct: 175 ILILDE---ATSALDLESESIIQEALDVL--SKDRTTLIVAHRLS--TITHADKIVVIEN 227
Query: 262 GSVVHYGS-LELLEE 275
G +V G+ EL+ +
Sbjct: 228 GHIVETGTHRELIAK 242
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 77.6 bits (191), Expect = 2e-16
Identities = 42/216 (19%), Positives = 76/216 (35%), Gaps = 47/216 (21%)
Query: 86 ILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKKPAQLR 145
+LK+++ E+LA+ G +G+GK+SLL +I G + + + +
Sbjct: 51 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILG-----ELEASEGII---------KHS 96
Query: 146 KICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAGSFVG 205
F +Q ++P T+KE ++F ++ +K + D + +G
Sbjct: 97 GRVSFCSQFSWIMP-GTIKENIIFGVSYD--EYRYKSVVKACQLQQDITKFAEQDNTVLG 153
Query: 206 DEENR--------------------------GISGLDSTSALQVIELLASMAKAKQRTVV 239
+ LD + QV E +T +
Sbjct: 154 EGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLM-ANKTRI 212
Query: 240 LSIHQPSYRILQYISKFLILSRGSVVHYGSL-ELLE 274
L + L+ K LIL +GS YG+ EL
Sbjct: 213 LVTSKME--HLRKADKILILHQGSSYFYGTFSELQS 246
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 72.2 bits (177), Expect = 7e-15
Identities = 52/248 (20%), Positives = 90/248 (36%), Gaps = 53/248 (21%)
Query: 57 VTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRI 116
++ R++ +A + IL+ +SFEA+ + I+A GPSG GKS++ +
Sbjct: 2 LSARHVDFAYDDSE--------------QILRDISFEAQPNSIIAFAGPSGGGKSTIFSL 47
Query: 117 ISGRVRDQDFDPRSITVNCHQIKK--PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFR 174
+ IT++ I R GFV+Q+ ++ T++E L +
Sbjct: 48 LERFY---QPTAGEITIDGQPIDNISLENWRSQIGFVSQDSAIMA-GTIRENLTYGLEGD 103
Query: 175 LKGMSHKEKEDRVESLMDELGLTHVAGSFVGDEENRGISG-------------------- 214
+ D + + + VG E ISG
Sbjct: 104 YTDEDLWQVLDLAFARSFVENMPDQLNTEVG-ERGVKISGGQRQRLAIARAFLRNPKILM 162
Query: 215 -------LDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHY 267
LDS S V + L S+ K RT ++ H+ S + K + +G +
Sbjct: 163 LDEATASLDSESESMVQKALDSL--MKGRTTLVIAHRLS--TIVDADKIYFIEKGQITGS 218
Query: 268 GS-LELLE 274
G EL+
Sbjct: 219 GKHNELVA 226
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 47.7 bits (112), Expect = 6e-07
Identities = 25/187 (13%), Positives = 63/187 (33%), Gaps = 19/187 (10%)
Query: 100 LAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKKPAQLRKICGFVAQEDNLLP 159
+ + G G GK++L++ I R+ R+I +++ P ++ GF
Sbjct: 3 IIITGEPGVGKTTLVKKIVERL-----GKRAIGFWTEEVRDPETKKR-TGFRIITTEGKK 56
Query: 160 LLTVKETLMFSANFRLKGMSHKEKEDRVESLMDEL---GLTHVAGSFVGDEENRGISGLD 216
+ + G++ + E+ +++ + DE G
Sbjct: 57 KIFSSKFFTSKKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDE-----IGKM 111
Query: 217 STSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGSL---ELL 273
+ + +L+ + VV +I + + + L ++ +L
Sbjct: 112 ELFSKKFRDLVRQIMHDPNVNVVATIPIRD--VHPLVKEIRRLPGAVLIELTPENRDVIL 169
Query: 274 EETINNL 280
E+ ++ L
Sbjct: 170 EDILSLL 176
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} Length = 189 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.0 bits (92), Expect = 3e-04
Identities = 23/197 (11%), Positives = 56/197 (28%), Gaps = 13/197 (6%)
Query: 97 SEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKKPAQLRKICGFVAQE-D 155
+ + + GP G GK++L+ S ++ + ++ ++
Sbjct: 1 ARHVFLTGPPGVGKTTLIHKASEVLKSSGVPVD-GFYTEEVRQGGRRIGFDVVTLSGTRG 59
Query: 156 NLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAGSFVGDEENRGISGL 215
L + + E ++ + G V + G L
Sbjct: 60 PLSRVGLEPPPGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMEL 119
Query: 216 DSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGSLELLEE 275
S I+ + ++ +I P + L + + V + +E
Sbjct: 120 FS---QLFIQAVRQTLSTPGTIILGTIPVPKGKPLALVEEIRNRKDVKVF-----NVTKE 171
Query: 276 TINNLGYQIPTQLNAIE 292
N+L I + ++
Sbjct: 172 NRNHLLPDI---VTCVQ 185
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 627 | |||
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 100.0 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 100.0 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 100.0 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 100.0 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 100.0 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 100.0 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 100.0 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 100.0 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 100.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 100.0 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 100.0 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 100.0 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 100.0 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 100.0 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 99.97 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.2 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 98.95 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 97.4 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 97.27 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 97.17 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 97.1 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 97.08 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 97.0 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.98 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 96.98 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 96.91 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 96.88 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 96.79 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 96.7 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 96.66 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 96.61 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 96.6 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 96.6 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 96.55 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 96.54 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 96.52 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 96.48 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 96.47 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 96.47 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 96.33 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 96.33 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 96.33 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 96.32 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 96.31 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 96.22 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 96.17 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 96.14 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 96.07 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 96.0 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 96.0 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 95.96 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 95.95 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 95.93 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 95.87 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 95.86 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 95.85 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 95.84 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 95.8 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 95.77 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 95.73 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 95.72 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 95.71 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 95.66 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 95.65 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 95.61 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 95.61 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 95.6 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 95.6 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 95.55 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 95.53 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 95.53 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 95.45 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 95.45 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 95.44 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 95.4 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 95.39 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 95.32 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 95.26 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 95.25 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 95.25 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 95.22 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 95.22 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 95.16 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 95.07 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 95.07 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 95.04 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 94.98 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 94.91 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 94.91 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 94.87 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 94.84 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 94.83 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 94.8 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 94.79 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 94.73 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 94.73 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 94.73 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 94.62 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 94.62 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 94.61 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 94.61 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 94.54 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 94.47 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 94.46 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 94.44 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 94.4 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 94.32 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 94.23 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 94.11 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 94.04 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 94.02 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 94.01 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 94.01 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 93.97 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 93.96 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 93.94 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 93.94 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 93.92 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 93.91 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 93.9 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 93.9 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 93.89 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 93.83 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 93.77 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 93.75 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 93.73 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 93.68 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 93.65 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 93.62 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 93.6 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 93.55 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 93.54 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 93.54 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 93.53 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 93.49 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 93.48 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 93.45 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 93.39 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 93.37 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 93.34 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 93.33 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 93.28 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 93.27 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 93.27 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 93.17 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 93.13 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 93.07 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 93.06 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 93.04 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 93.03 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 92.94 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 92.9 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 92.89 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 92.89 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 92.85 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 92.84 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 92.82 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 92.81 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 92.78 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 92.74 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 92.64 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 92.6 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 92.6 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 92.54 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 92.47 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 92.46 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 92.42 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 92.33 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 92.21 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 92.17 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 92.17 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 92.14 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 92.1 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 92.09 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 92.06 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 91.96 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 91.95 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 91.95 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 91.92 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 91.88 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 91.85 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 91.85 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 91.67 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 91.64 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 91.6 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 91.6 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 91.49 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 91.44 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 91.41 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 91.36 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 91.36 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 91.22 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 91.11 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 91.05 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 90.97 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 90.88 | |
| d1g8pa_ | 333 | ATPase subunit of magnesium chelatase, BchI {Rhodo | 90.86 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 90.81 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 90.69 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 90.65 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 90.3 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 90.3 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 90.17 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 90.16 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 90.11 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 89.79 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 89.77 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 89.11 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 88.77 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 88.41 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 88.36 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 88.27 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 87.86 | |
| d2jdid3 | 276 | Central domain of beta subunit of F1 ATP synthase | 87.86 | |
| d2bcjq2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 87.75 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 87.75 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 87.3 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 87.21 | |
| d1nija1 | 222 | Hypothetical protein YjiA, N-terminal domain {Esch | 87.11 | |
| d1w44a_ | 321 | NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | 87.06 | |
| d2a5yb3 | 277 | CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI | 86.57 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 86.49 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 86.39 | |
| d1e9ra_ | 433 | Bacterial conjugative coupling protein TrwB {Esche | 85.42 | |
| d1a5ta2 | 207 | delta prime subunit of DNA polymerase III, N-domai | 84.56 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 84.21 | |
| d1r6bx2 | 268 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 83.8 | |
| d1qvra3 | 315 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 83.47 | |
| d1jbka_ | 195 | ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | 83.43 | |
| d2olra1 | 313 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 83.09 | |
| d1d2ea3 | 196 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 83.02 | |
| d1um8a_ | 364 | ClpX {Helicobacter pylori [TaxId: 210]} | 82.01 | |
| d1j3ba1 | 318 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 81.99 |
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=8e-47 Score=372.04 Aligned_cols=198 Identities=25% Similarity=0.405 Sum_probs=149.5
Q ss_pred EEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCc
Q 006897 57 VTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCH 136 (627)
Q Consensus 57 l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~ 136 (627)
|+++||+++|+ ++++|+||||+|++||++||+||||||||||+|+|+|+++|++ |+|.++|+
T Consensus 1 Iev~nv~k~yg---------------~~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p~s---G~I~i~g~ 62 (232)
T d2awna2 1 VQLQNVTKAWG---------------EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITS---GDLFIGEK 62 (232)
T ss_dssp EEEEEEEEEET---------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSE---EEEEESSS
T ss_pred CEEEEEEEEEC---------------CEEEEeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCC---CEEEECCE
Confidence 68999999993 4579999999999999999999999999999999999999964 99999999
Q ss_pred cCCChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccCC----cCCccccC--
Q 006897 137 QIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAGS----FVGDEENR-- 210 (627)
Q Consensus 137 ~~~~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~----~~gGe~qr-- 210 (627)
++.+.+..++.||||||++.+++.+||+||+.++...+ +.++++.+++++++++.++|.+..++ ++||||||
T Consensus 63 ~i~~~~~~~r~ig~v~Q~~~l~~~~tv~eni~~~~~~~--~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~LSGGqkQRva 140 (232)
T d2awna2 63 RMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLA--GAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVA 140 (232)
T ss_dssp CCTTSCGGGTCEEEECSSCCC-----------------------CHHHHHHHHHHHHC---------------------C
T ss_pred ECCCCchhhceeeeeccccccccchhHHHHHHHHHHHc--CCCHHHHHHHHHHHHHhCCChhhhhCChhhCCHHHHHHHH
Confidence 97554456788999999999999999999999986543 45677888999999999999887665 45999999
Q ss_pred ----------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeCCHHHHH
Q 006897 211 ----------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGSLELLE 274 (627)
Q Consensus 211 ----------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~ 274 (627)
||+|||+.++.++++.|+++.++.|+|||++|||++ ++.++|||+++|++|++++.|+++++.
T Consensus 141 iAraL~~~P~illlDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~-~a~~~~dri~vm~~G~iv~~G~~~el~ 219 (232)
T d2awna2 141 IGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV-EAMTLADKIVVLDAGRVAQVGKPLELY 219 (232)
T ss_dssp HHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHH-HHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEeCHHHHH
Confidence 999999999999999999998888999999999998 599999999999999999999999886
Q ss_pred H
Q 006897 275 E 275 (627)
Q Consensus 275 ~ 275 (627)
+
T Consensus 220 ~ 220 (232)
T d2awna2 220 H 220 (232)
T ss_dssp H
T ss_pred h
Confidence 4
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=1e-46 Score=372.59 Aligned_cols=200 Identities=20% Similarity=0.342 Sum_probs=174.6
Q ss_pred ceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEEC
Q 006897 55 CKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVN 134 (627)
Q Consensus 55 ~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~ 134 (627)
..|+++||+++|+ ++++|+||||+|++||+++|+||||||||||+|+|+|+++|++ |+|.++
T Consensus 5 ~~I~v~nlsk~yg---------------~~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~s---G~I~i~ 66 (239)
T d1v43a3 5 VEVKLENLTKRFG---------------NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTE---GRIYFG 66 (239)
T ss_dssp CCEEEEEEEEEET---------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSE---EEEEET
T ss_pred CeEEEEEEEEEEC---------------CEEEEcceeEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCC---CEEEEc
Confidence 3589999999993 4679999999999999999999999999999999999999964 999999
Q ss_pred CccCCChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccCCc----CCccccC
Q 006897 135 CHQIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAGSF----VGDEENR 210 (627)
Q Consensus 135 g~~~~~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~----~gGe~qr 210 (627)
|+++.+....+++||||||++.+|+.+||+||+.|++.. .+.++++.+++++++|+.+||++.+++. +||||||
T Consensus 67 g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QR 144 (239)
T d1v43a3 67 DRDVTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKI--KKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQR 144 (239)
T ss_dssp TEECTTSCGGGGTEEEEEC------CCCHHHHHHTTCC----CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHH
T ss_pred ceecccCCcccceEEEEeechhhcccchHHHHHHHHHHH--cCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHH
Confidence 999755444567899999999999999999999987543 4568889999999999999999877654 5999999
Q ss_pred ------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeCCHHH
Q 006897 211 ------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGSLEL 272 (627)
Q Consensus 211 ------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~ 272 (627)
||+||||.++.+++++|++++++.|+|||++|||++ ++.++||||++|++|+|++.|++++
T Consensus 145 vaiAraL~~~P~iLllDEPts~LD~~~~~~i~~ll~~l~~~~g~tii~vTHd~~-~a~~~~dri~vm~~G~iv~~G~~~e 223 (239)
T d1v43a3 145 VAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQV-EAMTMGDRIAVMNRGQLLQIGSPTE 223 (239)
T ss_dssp HHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEETTEEEEEECHHH
T ss_pred HHHHhhhccCCCceeecCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCHHH
Confidence 999999999999999999998878999999999999 5899999999999999999999998
Q ss_pred HHH
Q 006897 273 LEE 275 (627)
Q Consensus 273 ~~~ 275 (627)
+.+
T Consensus 224 l~~ 226 (239)
T d1v43a3 224 VYL 226 (239)
T ss_dssp HHH
T ss_pred HHh
Confidence 853
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=4.5e-46 Score=368.12 Aligned_cols=201 Identities=25% Similarity=0.377 Sum_probs=180.4
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
.|+++||+|+|+. +...+|+||||+|++||+++|+||||||||||+|+|+|+++|++ |+|.++|
T Consensus 3 ~i~v~nlsk~y~~-------------g~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p~~---G~I~~~g 66 (242)
T d1oxxk2 3 RIIVKNVSKVFKK-------------GKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPST---GELYFDD 66 (242)
T ss_dssp CEEEEEEEEEEGG-------------GTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSE---EEEEETT
T ss_pred EEEEEeEEEEECC-------------CCEEEEeceEEEECCCCEEEEECCCCCcHHHHHHHHHcCcCCCC---ceEEECC
Confidence 5899999999942 34579999999999999999999999999999999999999964 9999999
Q ss_pred ccCCC-----hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccCCc----CCc
Q 006897 136 HQIKK-----PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAGSF----VGD 206 (627)
Q Consensus 136 ~~~~~-----~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~----~gG 206 (627)
+++.. ....|++||||||++.+||.+||+||+.|+++ ..+.++++.+++++++++.+||++.++++ +||
T Consensus 67 ~~i~~~~~~~~~~~rr~ig~vfQ~~~L~p~ltv~eni~~~l~--~~~~~~~~~~~~v~~~l~~~gL~~~~~~~p~~LSGG 144 (242)
T d1oxxk2 67 RLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLT--NMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGA 144 (242)
T ss_dssp EEEEETTEESSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGT--TSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHH
T ss_pred EEeecCchhhcchhhccceEEeccccccccccHHHHhhhhhH--hhcCCHHHHHHHHHHHHhhcChHhhhhCChhhCCHH
Confidence 98732 12346789999999999999999999999864 34568888999999999999998877655 499
Q ss_pred cccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeC
Q 006897 207 EENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYG 268 (627)
Q Consensus 207 e~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G 268 (627)
|||| ||+|||+.++.+++++|+++.++.|+|||++|||++ ++.++|||+++|++|+|++.|
T Consensus 145 qkQRvaiARaL~~~P~llllDEPt~~LD~~~~~~i~~~i~~l~~~~g~tvi~vTHd~~-~~~~~~dri~vm~~G~iv~~g 223 (242)
T d1oxxk2 145 QQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPA-DIFAIADRVGVLVKGKLVQVG 223 (242)
T ss_dssp HHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHH-HHHHHCSEEEEEETTEEEEEE
T ss_pred HHhHHHHHhHHhhcccceeecCCccCCCHHHHHHHHHHHHHHHhccCCEEEEEECCHH-HHHHhCCEEEEEECCEEEEEc
Confidence 9999 999999999999999999998878999999999998 589999999999999999999
Q ss_pred CHHHHHH
Q 006897 269 SLELLEE 275 (627)
Q Consensus 269 ~~~~~~~ 275 (627)
+++++.+
T Consensus 224 ~~~el~~ 230 (242)
T d1oxxk2 224 KPEDLYD 230 (242)
T ss_dssp CHHHHHH
T ss_pred CHHHHHh
Confidence 9998854
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=2.1e-45 Score=363.61 Aligned_cols=199 Identities=22% Similarity=0.382 Sum_probs=179.6
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
.|+++||+++|+ ++++|+||||+|++||+++|+||||||||||+|+|+|+++|++ |+|.++|
T Consensus 3 ~i~v~nl~k~yg---------------~~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p~s---G~I~~~g 64 (240)
T d1g2912 3 GVRLVDVWKVFG---------------EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSR---GQIYIGD 64 (240)
T ss_dssp EEEEEEEEEEET---------------TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSE---EEEEETT
T ss_pred cEEEEeEEEEEC---------------CEEEEcceeeEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCC---CEEEECC
Confidence 589999999993 4579999999999999999999999999999999999999964 9999999
Q ss_pred ccCCCh------hhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccCCc----CC
Q 006897 136 HQIKKP------AQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAGSF----VG 205 (627)
Q Consensus 136 ~~~~~~------~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~----~g 205 (627)
+++... ...|+.||||||++.++|.+||+||+.++...+ +.++++.+++++++++.+||++..+++ +|
T Consensus 65 ~~i~~~~~~~~~~~~~r~ig~v~Q~~~L~~~ltV~eni~~~~~~~--~~~~~e~~~~v~~~l~~~~l~~~~~~~p~~LSG 142 (240)
T d1g2912 65 KLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLR--KVPRQEIDQRVREVAELLGLTELLNRKPRELSG 142 (240)
T ss_dssp EEEEEGGGTEECCGGGSSEEEECSCCCCCTTSCHHHHHHHHHHHT--TCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCH
T ss_pred EEecccchhhhcccccccceecccchhhcchhhhhHhhhhhHHHc--CCCHHHHHHHHHHHHHHcCChhHhcCChhhCCH
Confidence 987321 123578999999999999999999999998654 457888999999999999999877655 59
Q ss_pred ccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEee
Q 006897 206 DEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHY 267 (627)
Q Consensus 206 Ge~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~ 267 (627)
||+|| ||+|||+.++.+++++|+++.++.|+|||++|||++ ++.++|||+++|++|++++.
T Consensus 143 GqkQRv~IAraL~~~P~iLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHd~~-~~~~~~drv~vm~~G~iv~~ 221 (240)
T d1g2912 143 GQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQV-EAMTMGDRIAVMNRGVLQQV 221 (240)
T ss_dssp HHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEETTEEEEE
T ss_pred HHHHHHHHHHHHhcCCCEEEecCCCcccCHHHHHHHHHHHHHHHhccCCEEEEEcCCHH-HHHHhCCEEEEEECCEEEEE
Confidence 99999 999999999999999999998877999999999998 58999999999999999999
Q ss_pred CCHHHHHH
Q 006897 268 GSLELLEE 275 (627)
Q Consensus 268 G~~~~~~~ 275 (627)
|+++++.+
T Consensus 222 G~~~el~~ 229 (240)
T d1g2912 222 GSPDEVYD 229 (240)
T ss_dssp ECHHHHHH
T ss_pred cCHHHHHh
Confidence 99998853
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=6.2e-46 Score=367.52 Aligned_cols=201 Identities=23% Similarity=0.380 Sum_probs=179.3
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
+|+++||+++|..+. ...++|+||||+|++||++||+||||||||||+|+|+|+.+|++ |+|.++|
T Consensus 1 mi~v~nlsk~y~~~~-----------~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~s---G~I~~~g 66 (240)
T d3dhwc1 1 MIKLSNITKVFHQGT-----------RTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTE---GSVLVDG 66 (240)
T ss_dssp CEEEEEEEEEEECSS-----------CEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSCCSE---EEEEETT
T ss_pred CEEEEeEEEEeCCCC-----------eeEEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHcCCccccC---CceEEcC
Confidence 589999999996431 23468999999999999999999999999999999999999864 9999999
Q ss_pred ccCCC--h---hhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccCC----cCCc
Q 006897 136 HQIKK--P---AQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAGS----FVGD 206 (627)
Q Consensus 136 ~~~~~--~---~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~----~~gG 206 (627)
+++.. . ..+|+++|||||++.+++.+||+||+.+++..+ +.++++.++++.++|+.+||++..++ ++||
T Consensus 67 ~~i~~~~~~~~~~~rr~ig~VfQ~~~l~~~~tv~eni~~~l~~~--~~~~~~~~~~v~~~L~~vgL~~~~~~~~~~LSGG 144 (240)
T d3dhwc1 67 QELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELD--NTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGG 144 (240)
T ss_dssp EEECTTCHHHHHHHHHHEEECCSSCCCCTTSBHHHHHHHHHHTT--TCCTTHHHHHHHHHHHHHSTTTTTSSCBSCCCHH
T ss_pred eEeeeCChhhhhhhhccccccccccccCCCccHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHH
Confidence 99743 2 246678999999999999999999999987543 55778889999999999999877665 4599
Q ss_pred cccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeC
Q 006897 207 EENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYG 268 (627)
Q Consensus 207 e~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G 268 (627)
|+|| ||+|||+.++.+++++|++++++.|+|||++|||++ ++.++|||+++|++|++++.|
T Consensus 145 ~~QRvaiAraL~~~P~lLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHdl~-~~~~~~dri~vl~~G~iv~~G 223 (240)
T d3dhwc1 145 QKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMD-VVKRICDCVAVISNGELIEQD 223 (240)
T ss_dssp HHHHHHHHHHHHTCCSEEEEESGGGSSCHHHHHHHHHHHHHHHHHHCCEEEEEBSCHH-HHHHHCSEEEEEETTEEEEEE
T ss_pred HHHHHHHhhhhccCCCeEEeccccccCCHHHhhHHHHHHHHHHhccCCEEEEEcCCHH-HHHHhCCEEEEEECCEEEEEC
Confidence 9999 999999999999999999998888999999999998 589999999999999999999
Q ss_pred CHHHH
Q 006897 269 SLELL 273 (627)
Q Consensus 269 ~~~~~ 273 (627)
+++++
T Consensus 224 ~~~ei 228 (240)
T d3dhwc1 224 TVSEV 228 (240)
T ss_dssp ETTTT
T ss_pred CHHHH
Confidence 99876
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=100.00 E-value=1.6e-45 Score=361.63 Aligned_cols=195 Identities=22% Similarity=0.372 Sum_probs=174.6
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
+|+++||||+|+ + .+|+||||+|++||++||+||||||||||+|+|+|+++|++ |+|.++|
T Consensus 1 mi~v~nlsk~y~---------------~-~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p~s---G~I~~~G 61 (229)
T d3d31a2 1 MIEIESLSRKWK---------------N-FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDS---GRILLDG 61 (229)
T ss_dssp CEEEEEEEEECS---------------S-CEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSE---EEEEETT
T ss_pred CEEEEEEEEEeC---------------C-EEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCcCCCC---CEEEEcc
Confidence 589999999993 2 38999999999999999999999999999999999999964 9999999
Q ss_pred ccCCChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccCCc----CCccccC-
Q 006897 136 HQIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAGSF----VGDEENR- 210 (627)
Q Consensus 136 ~~~~~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~----~gGe~qr- 210 (627)
+++.+....++.+|||||++.+||.+||+||+.|+...+. .. .+++++++++.++|++..++. +||||||
T Consensus 62 ~~i~~~~~~~r~ig~v~Q~~~l~~~~tV~enl~~~~~~~~--~~---~~~~~~~~l~~~~l~~~~~~~~~~LSGG~~QRv 136 (229)
T d3d31a2 62 KDVTDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKK--IK---DPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRV 136 (229)
T ss_dssp EECTTSCHHHHTCEEECTTCCCCTTSCHHHHHHHHHHHHC--CC---CHHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHH
T ss_pred EeccccchhHhcceeeccccccCccccHHHHHHHHHhhcc--cc---HHHHHHHHHHHhcchhhHhCChhhCCHHHhcch
Confidence 9986544557789999999999999999999999986653 22 245799999999998877654 5999999
Q ss_pred -----------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeCCHHHH
Q 006897 211 -----------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGSLELL 273 (627)
Q Consensus 211 -----------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~ 273 (627)
||+|||+.++.+++++|++++++.|+|||++|||++ ++.++|||+++|++|++++.|+++++
T Consensus 137 aiAraL~~~P~iLllDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vtHd~~-~~~~~~drv~vm~~G~iv~~g~~~el 215 (229)
T d3d31a2 137 ALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQT-EARIMADRIAVVMDGKLIQVGKPEEI 215 (229)
T ss_dssp HHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHH-HHHHHCSEEEEESSSCEEEEECHHHH
T ss_pred hhhhhhhccCCceeecCCCcCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCCHH-HHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 999999999999999999998888999999999998 58999999999999999999999988
Q ss_pred HH
Q 006897 274 EE 275 (627)
Q Consensus 274 ~~ 275 (627)
.+
T Consensus 216 ~~ 217 (229)
T d3d31a2 216 FE 217 (229)
T ss_dssp HS
T ss_pred Hh
Confidence 53
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=5.7e-44 Score=351.49 Aligned_cols=199 Identities=25% Similarity=0.425 Sum_probs=172.5
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
+|+++||+++|+.+. ....+|+||||+|++||++||+||||||||||+++|+|+.+|++ |+|.++|
T Consensus 1 mI~i~nlsk~y~~~~-----------~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p~s---G~I~~~g 66 (230)
T d1l2ta_ 1 MIKLKNVTKTYKMGE-----------EIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTE---GEVYIDN 66 (230)
T ss_dssp CEEEEEEEEEEEETT-----------EEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSE---EEEEETT
T ss_pred CEEEEeEEEEeCCCC-----------eeEEEEeceEEEEcCCCEEEEECCCCCCcchhhHhccCCCCCCc---ceeEECC
Confidence 589999999996331 23468999999999999999999999999999999999999964 9999999
Q ss_pred ccCCC--hh---hh-cccEEEEccCCCCCCCCCHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHHHcCCcc-ccC----Cc
Q 006897 136 HQIKK--PA---QL-RKICGFVAQEDNLLPLLTVKETLMFSANFRL-KGMSHKEKEDRVESLMDELGLTH-VAG----SF 203 (627)
Q Consensus 136 ~~~~~--~~---~~-r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~-~~~----~~ 203 (627)
+++.. .+ .+ |++||||||++.++|.+||+||+.++...+. .+.+.++..+++.++|+.+||.+ .++ ++
T Consensus 67 ~~i~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~p~~L 146 (230)
T d1l2ta_ 67 IKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQL 146 (230)
T ss_dssp EECTTCCHHHHHHHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCCSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGS
T ss_pred EEcCcCChhhcchhhcceEEEEecchhhCcCccHHHHHhHHHHHhccCCCCHHHHHHHHHHHHHhhchhhhhhcCChhhC
Confidence 99743 22 23 3579999999999999999999999886543 24567788889999999999965 444 46
Q ss_pred CCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEE
Q 006897 204 VGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVV 265 (627)
Q Consensus 204 ~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv 265 (627)
+|||+|| ||+|||+.++.+++++|+++.++.|+|||++|||++ + .++|||+++|++|+|+
T Consensus 147 SGGqkQRvaIAraL~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~-~-a~~~drv~~m~~G~Iv 224 (230)
T d1l2ta_ 147 SGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDIN-V-ARFGERIIYLKDGEVE 224 (230)
T ss_dssp CHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEEECSCHH-H-HTTSSEEEEEETTEEE
T ss_pred CHHHHHHHHHHhhhhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHhhCCEEEEECCCHH-H-HHhCCEEEEEECCEEE
Confidence 7999999 999999999999999999998888999999999997 3 4799999999999999
Q ss_pred eeCCH
Q 006897 266 HYGSL 270 (627)
Q Consensus 266 ~~G~~ 270 (627)
++|++
T Consensus 225 ~~g~~ 229 (230)
T d1l2ta_ 225 REEKL 229 (230)
T ss_dssp EEEEC
T ss_pred EeccC
Confidence 99864
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=1e-42 Score=345.76 Aligned_cols=200 Identities=28% Similarity=0.423 Sum_probs=180.1
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
.|+++||+++| ++++||+||||+|++||++||+||||||||||+|+|+|+++|++ |+|.++|
T Consensus 2 aI~v~nl~k~y---------------g~~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p~~---G~i~i~G 63 (238)
T d1vpla_ 2 AVVVKDLRKRI---------------GKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSS---GIVTVFG 63 (238)
T ss_dssp CEEEEEEEEEE---------------TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSE---EEEEETT
T ss_pred CEEEEeEEEEE---------------CCEEEEccceeEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCC---CEEEECc
Confidence 38899999999 35679999999999999999999999999999999999999964 9999999
Q ss_pred ccCCC-hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccC----CcCCccccC
Q 006897 136 HQIKK-PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAG----SFVGDEENR 210 (627)
Q Consensus 136 ~~~~~-~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~----~~~gGe~qr 210 (627)
+++.+ +.+.|+.+|||||++.+++.+|+.||+.+...++ +.++++.+++++++++.++|.+..+ .++||||||
T Consensus 64 ~~i~~~~~~~~~~i~~vpq~~~~~~~ltv~e~l~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lSgG~~qr 141 (238)
T d1vpla_ 64 KNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFY--ASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRK 141 (238)
T ss_dssp EETTTCHHHHHTTEEEECTTCCCCTTSBHHHHHHHHHHHH--CCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHH
T ss_pred EecccChHHHHhhEeEeeeccccCCCccHHHHHHHHHHhc--CCCHHHHHHHHHHHHHhCCCHHHHhhhhhhCCHHHHHH
Confidence 99743 4567889999999999999999999999987664 3467778889999999999987655 455999999
Q ss_pred ------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeCCHHH
Q 006897 211 ------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGSLEL 272 (627)
Q Consensus 211 ------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~ 272 (627)
||+|||+.++.+++++|++++++ |+|||++|||++ ++..+||||++|++|++++.|++++
T Consensus 142 v~iA~al~~~p~illLDEPt~gLD~~~~~~i~~~i~~~~~~-g~tii~~tH~l~-~~~~~~drv~vl~~G~iv~~g~~~e 219 (238)
T d1vpla_ 142 LLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQE-GLTILVSSHNML-EVEFLCDRIALIHNGTIVETGTVEE 219 (238)
T ss_dssp HHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEEECCHH-HHTTTCSEEEEEETTEEEEEEEHHH
T ss_pred HHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCHHH
Confidence 99999999999999999999865 999999999999 5899999999999999999999999
Q ss_pred HHHHH
Q 006897 273 LEETI 277 (627)
Q Consensus 273 ~~~~~ 277 (627)
+.+.+
T Consensus 220 l~~~~ 224 (238)
T d1vpla_ 220 LKERY 224 (238)
T ss_dssp HHHHT
T ss_pred HHhcc
Confidence 97653
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=5.2e-43 Score=351.68 Aligned_cols=199 Identities=26% Similarity=0.369 Sum_probs=175.9
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
.|+++||+++|+ +.++|+||||+|++||++||+||||||||||+|+|+|+++|++ |+|.++|
T Consensus 2 ~Lev~nl~k~yg---------------~~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p~~---G~I~~~G 63 (258)
T d1b0ua_ 2 KLHVIDLHKRYG---------------GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSE---GAIIVNG 63 (258)
T ss_dssp CEEEEEEEEEET---------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSE---EEEEETT
T ss_pred eEEEEEEEEEEC---------------CEEEEcceeeEEcCCCEEEEECCCCCcHHHHHHHHHcCccCCC---CCEEECC
Confidence 589999999993 4569999999999999999999999999999999999999864 9999999
Q ss_pred ccCCC---------------hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccc-
Q 006897 136 HQIKK---------------PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHV- 199 (627)
Q Consensus 136 ~~~~~---------------~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~- 199 (627)
+++.. ....|+++|||||++.+++.+||.||+.++.. +..+.++++.++++.++++.+||.+.
T Consensus 64 ~~i~~~~~~~~~~~~~~~~~~~~~r~~ig~vfQ~~~l~~~~tv~env~~~~~-~~~~~~~~~~~~~~~~~l~~~~l~~~~ 142 (258)
T d1b0ua_ 64 QNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPI-QVLGLSKHDARERALKYLAKVGIDERA 142 (258)
T ss_dssp EECCEEECTTSSEEESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHH-HTTCCCHHHHHHHHHHHHHHTTCCHHH
T ss_pred EEeccCCccchhcccccHhHHHHHhcceEEEEechhhccchhcchhhhhhHH-HhcCCCHHHHHHHHHHHHHHcCCchhh
Confidence 98731 12356789999999999999999999998753 23345778889999999999999653
Q ss_pred ----cCCcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhhe
Q 006897 200 ----AGSFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFL 257 (627)
Q Consensus 200 ----~~~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~ 257 (627)
..+++|||+|| ||+|||+.++.+++++|++++++ |+|||++|||++ ++.++||||+
T Consensus 143 ~~~~p~~LSGG~~QRv~iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~~-g~til~vtHdl~-~~~~~adri~ 220 (258)
T d1b0ua_ 143 QGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEE-GKTMVVVTHEMG-FARHVSSHVI 220 (258)
T ss_dssp HTSCGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHT-TCCEEEECSCHH-HHHHHCSEEE
T ss_pred hccCcccccHHHHHHHHHHHHHhcCCCEEEeccccccCCHHHHHHHHHhhhhhccc-CCceEEEeCCHH-HHHHhCCEEE
Confidence 24567999999 99999999999999999999874 999999999999 5899999999
Q ss_pred eecCCeEEeeCCHHHHHH
Q 006897 258 ILSRGSVVHYGSLELLEE 275 (627)
Q Consensus 258 vL~~G~iv~~G~~~~~~~ 275 (627)
+|++|+|++.|+++++..
T Consensus 221 vm~~G~iv~~g~~~ev~~ 238 (258)
T d1b0ua_ 221 FLHQGKIEEEGDPEQVFG 238 (258)
T ss_dssp EEETTEEEEEECHHHHHH
T ss_pred EEECCEEEEEcCHHHHHh
Confidence 999999999999998854
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=100.00 E-value=3e-42 Score=343.09 Aligned_cols=198 Identities=23% Similarity=0.330 Sum_probs=169.6
Q ss_pred cceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEE
Q 006897 54 TCKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITV 133 (627)
Q Consensus 54 ~~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i 133 (627)
..+|+++||+++| +++++|+||||+|++||++||+||||||||||+|+|+|+++|++ |+|.+
T Consensus 4 d~~Lev~~l~k~y---------------g~~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p~~---G~I~~ 65 (240)
T d1ji0a_ 4 DIVLEVQSLHVYY---------------GAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQK---GKIIF 65 (240)
T ss_dssp SEEEEEEEEEEEE---------------TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSE---EEEEE
T ss_pred ceEEEEeeEEEEE---------------CCEEEEeeeeEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCc---cEEEe
Confidence 4589999999999 34579999999999999999999999999999999999999964 99999
Q ss_pred CCccCCC--hhh-hcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHc-CCcccc----CCcCC
Q 006897 134 NCHQIKK--PAQ-LRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDEL-GLTHVA----GSFVG 205 (627)
Q Consensus 134 ~g~~~~~--~~~-~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~l-gL~~~~----~~~~g 205 (627)
+|+++.. ... .|..++|+||+..+|+.+||+||+.+++..+ ..++..+++++++++.+ +|++.. .+++|
T Consensus 66 ~G~~i~~~~~~~~~r~gi~~~~q~~~l~~~ltv~en~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~LSG 142 (240)
T d1ji0a_ 66 NGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNR---KDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSG 142 (240)
T ss_dssp TTEECTTCCHHHHHHTTEEEECSSCCCCTTSBHHHHHHGGGTTC---CCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCH
T ss_pred cccccccccHHHHHHhcccccCcccccCCcccHHHHHHHHHHhc---CCHHHHHHHHHHHHHHhhChHHHHhCchhhCCH
Confidence 9999743 222 2456999999999999999999998865322 23345556677777766 565554 45679
Q ss_pred ccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEee
Q 006897 206 DEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHY 267 (627)
Q Consensus 206 Ge~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~ 267 (627)
||||| ||+||||.++.+++++|++++++ |+|||++|||++ ++.++|||+++|++|++++.
T Consensus 143 G~~Qrv~iAraL~~~P~lLllDEPt~gLD~~~~~~i~~~i~~l~~~-g~til~~tH~l~-~~~~~~drv~vl~~G~iv~~ 220 (240)
T d1ji0a_ 143 GEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQE-GTTILLVEQNAL-GALKVAHYGYVLETGQIVLE 220 (240)
T ss_dssp HHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHT-TCCEEEEESCHH-HHHHHCSEEEEEETTEEEEE
T ss_pred HHHHHHHHHHHHHhCCCEeeecCCCcCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEE
Confidence 99999 99999999999999999999875 999999999998 58999999999999999999
Q ss_pred CCHHHHH
Q 006897 268 GSLELLE 274 (627)
Q Consensus 268 G~~~~~~ 274 (627)
|+++++.
T Consensus 221 g~~~el~ 227 (240)
T d1ji0a_ 221 GKASELL 227 (240)
T ss_dssp EEHHHHH
T ss_pred cCHHHHh
Confidence 9999875
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=7.3e-42 Score=343.51 Aligned_cols=202 Identities=19% Similarity=0.289 Sum_probs=173.9
Q ss_pred ceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEEC
Q 006897 55 CKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVN 134 (627)
Q Consensus 55 ~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~ 134 (627)
.+|+++||+++|+ +++||+||||++++||++||+||||||||||+|+|+|+++|++ |+|.++
T Consensus 3 ~iL~v~nlsk~yg---------------~~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~~---G~I~~~ 64 (254)
T d1g6ha_ 3 EILRTENIVKYFG---------------EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADE---GRVYFE 64 (254)
T ss_dssp EEEEEEEEEEEET---------------TEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSE---EEEEET
T ss_pred ceEEEEEEEEEEC---------------CeEEEcceEEEECCCCEEEEECCCCCcHHHHHHHHHCCCcCCC---cEEEEC
Confidence 4799999999993 4579999999999999999999999999999999999999964 999999
Q ss_pred CccCCC--hhh-hcccEEEEccCCCCCCCCCHHHHHHHHHHhc-----------CCCCCHHHHHHHHHHHHHHcCCcccc
Q 006897 135 CHQIKK--PAQ-LRKICGFVAQEDNLLPLLTVKETLMFSANFR-----------LKGMSHKEKEDRVESLMDELGLTHVA 200 (627)
Q Consensus 135 g~~~~~--~~~-~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~-----------~~~~~~~~~~~~v~~~l~~lgL~~~~ 200 (627)
|+++.. +.+ .++.|+|+||++.+++.+||.||+.++...+ .....+++..+++.++++.+++.+..
T Consensus 65 g~~i~~~~~~~~~~~gi~~v~Q~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~ 144 (254)
T d1g6ha_ 65 NKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLY 144 (254)
T ss_dssp TEECTTCCHHHHHHHTEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGT
T ss_pred CEeccchhHHHHHHhcCCccCCccccCCCCeeeeeeeehhhhccccchhhhhhhcccccHHHHHHHHHHHHHhcCcchhc
Confidence 999743 333 3456999999999999999999998863221 11123455667899999999998776
Q ss_pred CC----cCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhhee
Q 006897 201 GS----FVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLI 258 (627)
Q Consensus 201 ~~----~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~v 258 (627)
++ ++|||||| ||+|||+.++.+++++|+++++ .|+|||++|||++ ++.++||||++
T Consensus 145 ~~~~~~LSgG~~Qrv~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~-~g~til~vsHdl~-~~~~~~Drv~v 222 (254)
T d1g6ha_ 145 DRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKA-KGITFLIIEHRLD-IVLNYIDHLYV 222 (254)
T ss_dssp TSBGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH-TTCEEEEECSCCS-TTGGGCSEEEE
T ss_pred cCchhhCCcHHHHHHHHHHHHHhCcCchhhcCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEeCcHH-HHHHhCCEEEE
Confidence 54 55999999 9999999999999999999976 5999999999999 58999999999
Q ss_pred ecCCeEEeeCCHHHHHHH
Q 006897 259 LSRGSVVHYGSLELLEET 276 (627)
Q Consensus 259 L~~G~iv~~G~~~~~~~~ 276 (627)
|++|+++++|+++|+.+.
T Consensus 223 m~~G~iv~~g~~~e~~~~ 240 (254)
T d1g6ha_ 223 MFNGQIIAEGRGEEEIKN 240 (254)
T ss_dssp EETTEEEEEEESHHHHHH
T ss_pred EeCCEEEEEecHHHHhhc
Confidence 999999999999886543
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=1.5e-41 Score=334.83 Aligned_cols=192 Identities=23% Similarity=0.397 Sum_probs=169.1
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
.|++ ++.++|. +.. + ||||++. ||+++|+||||||||||+|+|+|+++|++ |+|.++|
T Consensus 2 ~l~v-~~~k~~g---------------~~~-~-~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~p~~---G~I~~~G 59 (240)
T d2onka1 2 FLKV-RAEKRLG---------------NFR-L-NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPDR---GEVRLNG 59 (240)
T ss_dssp CEEE-EEEEEET---------------TEE-E-EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSCCSE---EEEEETT
T ss_pred EEEE-EEEEEEC---------------CEE-E-EEEEEeC-CEEEEEECCCCChHHHHHHHHHcCCCCCc---eEEEECC
Confidence 3677 5678873 223 3 7999995 68999999999999999999999999964 9999999
Q ss_pred ccCCChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccCCc----CCccccC-
Q 006897 136 HQIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAGSF----VGDEENR- 210 (627)
Q Consensus 136 ~~~~~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~----~gGe~qr- 210 (627)
+++.+....|+.||||||++.++|.+||+||+.|++ ...++++.+++++++++.+||.+..++. +||||||
T Consensus 60 ~~i~~~~~~~r~ig~v~Q~~~l~~~ltV~enl~~~l----~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~LSGG~kQRv 135 (240)
T d2onka1 60 ADITPLPPERRGIGFVPQDYALFPHLSVYRNIAYGL----RNVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRV 135 (240)
T ss_dssp EECTTSCTTTSCCBCCCSSCCCCTTSCHHHHHHTTC----TTSCHHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHH
T ss_pred EECCcCCHHHcCceeeccchhhcccchhhHhhhhhh----cccCHHHHHHHHHHHHHhcCcHhhhhCChhhCCHHHHHHH
Confidence 998654455788999999999999999999999864 2346778889999999999998877654 5999999
Q ss_pred -----------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeCCHHHH
Q 006897 211 -----------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGSLELL 273 (627)
Q Consensus 211 -----------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~ 273 (627)
||+|||+.++.++++.|++++++.|+|||++|||++ ++.++|||+++|++|++++.|+++++
T Consensus 136 aiAral~~~P~illlDEPts~LD~~~~~~i~~~i~~l~~~~g~tvi~vtHd~~-~~~~~adri~vm~~G~ii~~G~~~el 214 (240)
T d2onka1 136 ALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLI-EAAMLADEVAVMLNGRIVEKGKLKEL 214 (240)
T ss_dssp HHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHH-HHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred HHHHHHhccCCceEecCccccCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCHH-HHHHhCCEEEEEECCEEEEEecHHHH
Confidence 999999999999999999998877999999999998 69999999999999999999999988
Q ss_pred H
Q 006897 274 E 274 (627)
Q Consensus 274 ~ 274 (627)
.
T Consensus 215 ~ 215 (240)
T d2onka1 215 F 215 (240)
T ss_dssp H
T ss_pred h
Confidence 5
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=8.2e-41 Score=334.81 Aligned_cols=200 Identities=22% Similarity=0.364 Sum_probs=163.0
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
.|+++||+|+|+++ .++.+|+||||+|++||++||+||||||||||+++|+|+++|++ |+|.+||
T Consensus 11 ~I~~~nvsf~Y~~~------------~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p~~---G~I~i~g 75 (251)
T d1jj7a_ 11 LVQFQDVSFAYPNR------------PDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTG---GQLLLDG 75 (251)
T ss_dssp CEEEEEEEECCTTS------------TTCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSE---EEEEETT
T ss_pred eEEEEEEEEECCCC------------CCCEeEeceEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCc---CEEEECC
Confidence 59999999999532 23569999999999999999999999999999999999999964 9999999
Q ss_pred ccCC--ChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHH-----HHHHHHHHHc--CCccc----cCC
Q 006897 136 HQIK--KPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKE-----DRVESLMDEL--GLTHV----AGS 202 (627)
Q Consensus 136 ~~~~--~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~-----~~v~~~l~~l--gL~~~----~~~ 202 (627)
+++. +.+.+|++++||+|++.+|+. ||+||+.++... .....+.. ....+.++.+ |++.. ...
T Consensus 76 ~~i~~~~~~~~r~~i~~v~Q~~~lf~~-tv~eni~~g~~~---~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~i~~~~~~ 151 (251)
T d1jj7a_ 76 KPLPQYEHRYLHRQVAAVGQEPQVFGR-SLQENIAYGLTQ---KPTMEEITAAAVKSGAHSFISGLPQGYDTEVDEAGSQ 151 (251)
T ss_dssp EEGGGBCHHHHHHHEEEECSSCCCCSS-BHHHHHHCSCSS---CCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCCSSCSS
T ss_pred EecchhhhHHHHHHhhhccccccccCc-chhhhhhhhhcc---cchHHHHHHHHHHHHHHHHHHhccccchhhHhccCcc
Confidence 9974 346788999999999999875 999999986321 11222211 1223344444 33333 345
Q ss_pred cCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeE
Q 006897 203 FVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSV 264 (627)
Q Consensus 203 ~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~i 264 (627)
++|||||| |||+||+.++.++++.|+++.++.|+|+|+||||++ ..+.||||++|++|+|
T Consensus 152 LSGGqkQRvaiARal~~~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi~itH~l~--~~~~aDrI~vl~~G~i 229 (251)
T d1jj7a_ 152 LSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLS--LVEQADHILFLEGGAI 229 (251)
T ss_dssp SCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGGCEEEEECSCHH--HHHTCSEEEEEETTEE
T ss_pred CChhHceEEEEeeccccCCcEEEecCcCcccChhhHHHHHHHHHHHhhhcCCEEEEEeCCHH--HHHhCCEEEEEECCEE
Confidence 77999999 999999999999999999998777899999999997 3577999999999999
Q ss_pred EeeCCHHHHHHH
Q 006897 265 VHYGSLELLEET 276 (627)
Q Consensus 265 v~~G~~~~~~~~ 276 (627)
++.|+++++.+.
T Consensus 230 v~~Gt~~eLl~~ 241 (251)
T d1jj7a_ 230 REGGTHQQLMEK 241 (251)
T ss_dssp EEEECHHHHHHH
T ss_pred EEECCHHHHHhC
Confidence 999999998653
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=3.6e-40 Score=327.64 Aligned_cols=190 Identities=24% Similarity=0.442 Sum_probs=158.2
Q ss_pred EEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCc
Q 006897 57 VTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCH 136 (627)
Q Consensus 57 l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~ 136 (627)
|+++||||+|+. +.+.+|+||||+|++||++||+||||||||||+++|+|+++|++ |+|.++|+
T Consensus 2 I~~~nvsf~Y~~-------------~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p~~---G~I~i~g~ 65 (241)
T d2pmka1 2 ITFRNIRFRYKP-------------DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPEN---GQVLIDGH 65 (241)
T ss_dssp EEEEEEEEESST-------------TSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSE---EEEEETTE
T ss_pred eEEEEEEEEeCC-------------CCcceEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCCC---CEEEECCE
Confidence 799999999943 23569999999999999999999999999999999999999864 99999999
Q ss_pred cCCC--hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCcc---------------c
Q 006897 137 QIKK--PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTH---------------V 199 (627)
Q Consensus 137 ~~~~--~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~---------------~ 199 (627)
++.. ...+|+++|||||++.+|+. ||+|||.++. +..+. +++.++++..++.+ .
T Consensus 66 ~i~~~~~~~lr~~i~~v~Q~~~lf~~-Ti~eNi~~~~----~~~~~----~~~~~~~~~~~~~~~i~~~~~~~~t~i~~~ 136 (241)
T d2pmka1 66 DLALADPNWLRRQVGVVLQDNVLLNR-SIIDNISLAN----PGMSV----EKVIYAAKLAGAHDFISELREGYNTIVGEQ 136 (241)
T ss_dssp ETTTSCHHHHHHHEEEECSSCCCTTS-BHHHHHCTTS----TTCCH----HHHHHHHHHHTCHHHHTTSTTGGGSBCSTT
T ss_pred EecccchhhhhceEEEEecccccCCc-cccccccccC----ccccH----HHHHHHHHHHhhHHHHHhhhcchhhhcCCC
Confidence 9743 56789999999999998875 9999998752 12222 23344444444321 1
Q ss_pred cCCcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecC
Q 006897 200 AGSFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSR 261 (627)
Q Consensus 200 ~~~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~ 261 (627)
...++|||+|| |||+||+.++..+++.|+++.+ |+|+|+|||+++. .+.||||++|++
T Consensus 137 g~~LSGGq~QRvalARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~--~~Tvi~itH~l~~--~~~~D~i~vl~~ 212 (241)
T d2pmka1 137 GAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICK--GRTVIIIAHRLST--VKNADRIIVMEK 212 (241)
T ss_dssp TTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHHT--TSEEEEECSSGGG--GTTSSEEEEEET
T ss_pred CCccCHHHHHHHhhhhhhhcccchhhhhCCccccCHHHHHHHHHHHHHHhC--CCEEEEEECCHHH--HHhCCEEEEEEC
Confidence 23567999999 9999999999999999999863 7999999999984 478999999999
Q ss_pred CeEEeeCCHHHHHH
Q 006897 262 GSVVHYGSLELLEE 275 (627)
Q Consensus 262 G~iv~~G~~~~~~~ 275 (627)
|+|++.|+++++..
T Consensus 213 G~Iv~~G~~~ell~ 226 (241)
T d2pmka1 213 GKIVEQGKHKELLS 226 (241)
T ss_dssp TEEEEEECHHHHHH
T ss_pred CEEEEECCHHHHHh
Confidence 99999999998864
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=7.2e-41 Score=333.41 Aligned_cols=191 Identities=25% Similarity=0.404 Sum_probs=159.2
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
+|+++||+|+|++ .+.+|+||||+|++||++||+||||||||||+++|+|+++|++ |+|.+||
T Consensus 1 mle~knvsf~Y~~--------------~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~---G~I~i~g 63 (242)
T d1mv5a_ 1 MLSARHVDFAYDD--------------SEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTA---GEITIDG 63 (242)
T ss_dssp CEEEEEEEECSSS--------------SSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSB---SCEEETT
T ss_pred CEEEEEEEEECCC--------------CCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHHhhCCCC---CEEEECC
Confidence 5899999999952 2469999999999999999999999999999999999999964 9999999
Q ss_pred ccCCC--hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccc--------------
Q 006897 136 HQIKK--PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHV-------------- 199 (627)
Q Consensus 136 ~~~~~--~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-------------- 199 (627)
+++.+ ...+|++||||||++.+|+. ||+||+.++.. ...+ .+.+.+.++..++.+.
T Consensus 64 ~~i~~~~~~~~r~~i~~v~Q~~~lf~~-ti~eNi~~~~~---~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 135 (242)
T d1mv5a_ 64 QPIDNISLENWRSQIGFVSQDSAIMAG-TIRENLTYGLE---GDYT----DEDLWQVLDLAFARSFVENMPDQLNTEVGE 135 (242)
T ss_dssp EESTTTSCSCCTTTCCEECCSSCCCCE-EHHHHTTSCTT---SCSC----HHHHHHHHHHHTCTTTTTSSTTGGGCEEST
T ss_pred EEeccccHHHHHhheEEEccccccCCc-chhhheecccc---cccc----hhhHHHHHHHHHhhhhhccCcccccccccC
Confidence 99743 46788999999999999987 99999977531 1112 2334445555544321
Q ss_pred -cCCcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeec
Q 006897 200 -AGSFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILS 260 (627)
Q Consensus 200 -~~~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~ 260 (627)
...++|||||| |||+||+.++.++++.|++++ .|+|+|++||+++. + +.||||++|+
T Consensus 136 ~g~~LSGGqkQRv~iARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~--~~~Tvi~itH~l~~-~-~~~D~i~vl~ 211 (242)
T d1mv5a_ 136 RGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLM--KGRTTLVIAHRLST-I-VDADKIYFIE 211 (242)
T ss_dssp TSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH--TTSEEEEECCSHHH-H-HHCSEEEEEE
T ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHc--CCCEEEEEECCHHH-H-HhCCEEEEEE
Confidence 12467999999 999999999999999999996 38999999999973 4 6799999999
Q ss_pred CCeEEeeCCHHHHHH
Q 006897 261 RGSVVHYGSLELLEE 275 (627)
Q Consensus 261 ~G~iv~~G~~~~~~~ 275 (627)
+|+|++.|+++++.+
T Consensus 212 ~G~iv~~G~~~eLl~ 226 (242)
T d1mv5a_ 212 KGQITGSGKHNELVA 226 (242)
T ss_dssp TTEECCCSCHHHHHH
T ss_pred CCEEEEECCHHHHHh
Confidence 999999999999865
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=2.8e-39 Score=323.57 Aligned_cols=191 Identities=25% Similarity=0.383 Sum_probs=161.6
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
.|+++||+|+|++ ..+.+|+||||+|++||++||+||||||||||+++|+|+++|++ |+|.++|
T Consensus 16 ~I~~~nvsf~Y~~-------------~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~---G~I~i~g 79 (255)
T d2hyda1 16 RIDIDHVSFQYND-------------NEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTS---GQILIDG 79 (255)
T ss_dssp CEEEEEEEECSCS-------------SSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSE---EEEEETT
T ss_pred EEEEEEEEEEeCC-------------CCCcceeceEEEEcCCCEEEEECCCCCcHHHHHHHHHhcCCccc---cccccCC
Confidence 5999999999953 23469999999999999999999999999999999999999964 9999999
Q ss_pred ccCC--ChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccc--------------
Q 006897 136 HQIK--KPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHV-------------- 199 (627)
Q Consensus 136 ~~~~--~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-------------- 199 (627)
+++. +...+|++++||+|++.+|+. ||+|||.++. +... ++++.++++..++.+.
T Consensus 80 ~~i~~~~~~~lr~~i~~v~Q~~~lf~~-Ti~eNi~~g~----~~~~----~~~~~~al~~~~l~~~i~~lp~gl~t~i~~ 150 (255)
T d2hyda1 80 HNIKDFLTGSLRNQIGLVQQDNILFSD-TVKENILLGR----PTAT----DEEVVEAAKMANAHDFIMNLPQGYDTEVGE 150 (255)
T ss_dssp EEGGGSCHHHHHHTEEEECSSCCCCSS-BHHHHHGGGC----SSCC----HHHHHHHHHHTTCHHHHHTSTTGGGCBCCG
T ss_pred EEcccCCHHHhhheeeeeeccccCCCC-CHHHHHhccC----cCCC----HHHHHHHHHHhCCHHHHHhccccccchhcC
Confidence 9874 356789999999999999875 9999998762 1112 2445666676666432
Q ss_pred -cCCcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeec
Q 006897 200 -AGSFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILS 260 (627)
Q Consensus 200 -~~~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~ 260 (627)
...++|||+|| |||+||+.++..+++.|+++. .++|+|++||+++. .+.||||++|+
T Consensus 151 ~g~~LSgGq~QRi~iARal~~~p~ililDEpts~LD~~t~~~i~~~l~~l~--~~~TvI~itH~~~~--~~~~D~ii~l~ 226 (255)
T d2hyda1 151 RGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLS--KDRTTLIVAHRLST--ITHADKIVVIE 226 (255)
T ss_dssp GGTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHT--TTSEEEEECSSGGG--TTTCSEEEEEE
T ss_pred CCCCcCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHh--cCCEEEEEeCCHHH--HHhCCEEEEEE
Confidence 12467999999 999999999999999999985 37899999999983 47899999999
Q ss_pred CCeEEeeCCHHHHHH
Q 006897 261 RGSVVHYGSLELLEE 275 (627)
Q Consensus 261 ~G~iv~~G~~~~~~~ 275 (627)
+|+|++.|+++++.+
T Consensus 227 ~G~iv~~G~~~eLl~ 241 (255)
T d2hyda1 227 NGHIVETGTHRELIA 241 (255)
T ss_dssp TTEEEEEECHHHHHH
T ss_pred CCEEEEECCHHHHHh
Confidence 999999999999864
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=5.1e-39 Score=322.06 Aligned_cols=192 Identities=21% Similarity=0.353 Sum_probs=159.3
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
.|+++||+|+|+.+ ..++|+||||+|++||++||+||||||||||+++|+|+++|++ |+|.++|
T Consensus 13 ~I~~~nvsf~Y~~~-------------~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p~~---G~I~i~g 76 (253)
T d3b60a1 13 DLEFRNVTFTYPGR-------------EVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDE---GHILMDG 76 (253)
T ss_dssp CEEEEEEEECSSSS-------------SCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSE---EEEEETT
T ss_pred EEEEEEEEEEeCCC-------------CCceeeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccCCCc---cEEEECC
Confidence 59999999999532 3469999999999999999999999999999999999999964 9999999
Q ss_pred ccCCC--hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcC-----------Ccccc--
Q 006897 136 HQIKK--PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELG-----------LTHVA-- 200 (627)
Q Consensus 136 ~~~~~--~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lg-----------L~~~~-- 200 (627)
+++.+ ...+|++++||+|++.+|.. |+++|+.++. ....+.+ +++++++..+ ++...
T Consensus 77 ~~i~~~~~~~~r~~i~~v~Q~~~l~~~-ti~~n~~~~~---~~~~~~~----~i~~a~~~~~l~~~i~~l~~gl~t~~~~ 148 (253)
T d3b60a1 77 HDLREYTLASLRNQVALVSQNVHLFND-TVANNIAYAR---TEEYSRE----QIEEAARMAYAMDFINKMDNGLDTIIGE 148 (253)
T ss_dssp EETTTBCHHHHHHTEEEECSSCCCCSS-BHHHHHHTTT---TSCCCHH----HHHHHHHTTTCHHHHHHSTTGGGSBCCT
T ss_pred cccchhhhhhhhheEEEEeeccccCCc-chhhhhhhcC---cccCCHH----HHHHHHHHHhHHHHHHhccccchhhhcC
Confidence 99743 46788899999999999875 9999998762 1122332 3333333333 33222
Q ss_pred --CCcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeec
Q 006897 201 --GSFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILS 260 (627)
Q Consensus 201 --~~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~ 260 (627)
..++|||+|| |||+||+.++..+++.|+++.+ ++|+|+||||++. .+.||||++|+
T Consensus 149 ~~~~LSGGqkQRvaiARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~--~~Tvi~itH~l~~--~~~~D~v~vl~ 224 (253)
T d3b60a1 149 NGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK--NRTSLVIAHRLST--IEQADEIVVVE 224 (253)
T ss_dssp TSCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHT--TSEEEEECSCGGG--TTTCSEEEEEE
T ss_pred CCCCcCHHHHHHHHHHHHHhcCCCEEEeccccccCCHHHHHHHHHHHHHhcc--CCEEEEEECCHHH--HHhCCEEEEEE
Confidence 3567999999 9999999999999999999963 7999999999983 47899999999
Q ss_pred CCeEEeeCCHHHHHH
Q 006897 261 RGSVVHYGSLELLEE 275 (627)
Q Consensus 261 ~G~iv~~G~~~~~~~ 275 (627)
+|+|++.|+++++.+
T Consensus 225 ~G~Iv~~G~~~eLl~ 239 (253)
T d3b60a1 225 DGIIVERGTHSELLA 239 (253)
T ss_dssp TTEEEEEECHHHHHH
T ss_pred CCEEEEECCHHHHHh
Confidence 999999999999865
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=5.7e-36 Score=296.37 Aligned_cols=188 Identities=22% Similarity=0.326 Sum_probs=160.4
Q ss_pred ceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEEC
Q 006897 55 CKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVN 134 (627)
Q Consensus 55 ~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~ 134 (627)
.+|+++||+++| +|+||||+|++||++||+||||||||||+|+|+|+. |+ .|+|.++
T Consensus 2 ~il~~~dv~~~~-------------------~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~-~~---~G~I~~~ 58 (231)
T d1l7vc_ 2 IVMQLQDVAEST-------------------RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SG---KGSIQFA 58 (231)
T ss_dssp EEEEEEEECCTT-------------------TSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSC-CC---SSEEEES
T ss_pred eEEEEECcccCc-------------------eecCEEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC-CC---ceEEEEC
Confidence 368999997544 699999999999999999999999999999999976 43 3999999
Q ss_pred CccCCC--hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccCC----cCCccc
Q 006897 135 CHQIKK--PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAGS----FVGDEE 208 (627)
Q Consensus 135 g~~~~~--~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~----~~gGe~ 208 (627)
|+++.. ..+++...+|++|+.......++.+++.+... .+...++++++++.+++++..++ ++|||+
T Consensus 59 g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-------~~~~~~~~~~~~~~~~l~~~~~~~~~~LSgG~~ 131 (231)
T d1l7vc_ 59 GQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQH-------DKTRTELLNDVAGALALDDKLGRSTNQLSGGEW 131 (231)
T ss_dssp SSBGGGSCHHHHHHHEEEECSCCCCCSSCBHHHHHHHHCS-------CTTCHHHHHHHHHHTTCTTTTTSBGGGCCHHHH
T ss_pred CEECCcCCHHHHHhhceeeeccccCCccccHHHHhhhccc-------hhhHHHHHHHHHHhcCCHhHhCcChhhcCHHHH
Confidence 998632 45566779999999776666799999987531 12345678899999999877654 569999
Q ss_pred cC-------------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCe
Q 006897 209 NR-------------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGS 263 (627)
Q Consensus 209 qr-------------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~ 263 (627)
|| ||+|||+.++..+.++|+++++ .|+|||++|||++ ++.++|||+++|++|+
T Consensus 132 Qrv~iA~al~~~~p~~~p~p~llllDEPt~gLD~~~~~~i~~~i~~l~~-~g~tii~vtHdl~-~~~~~~dri~vl~~G~ 209 (231)
T d1l7vc_ 132 QRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQ-QGLAIVMSSHDLN-HTLRHAHRAWLLKGGK 209 (231)
T ss_dssp HHHHHHHHHHHHCTTTCTTCCEEEESSCSTTCCHHHHHHHHHHHHHHHH-TTCEEEECCCCHH-HHHHHCSBCCBEETTE
T ss_pred HHHHHHHHHHhhCcccCCCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCHH-HHHHHCCEEEEEECCE
Confidence 87 8999999999999999999976 5999999999998 5999999999999999
Q ss_pred EEeeCCHHHHH
Q 006897 264 VVHYGSLELLE 274 (627)
Q Consensus 264 iv~~G~~~~~~ 274 (627)
+++.|+++++.
T Consensus 210 iv~~G~~~ev~ 220 (231)
T d1l7vc_ 210 MLASGRREEVL 220 (231)
T ss_dssp ECCCSBHHHHS
T ss_pred EEEECCHHHHh
Confidence 99999999874
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=3.1e-33 Score=270.71 Aligned_cols=175 Identities=18% Similarity=0.282 Sum_probs=146.2
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
.|+++|||++|+ ++||+||||+|++||++||+||||||||||+|+|+|+++|++ |+|.++|
T Consensus 2 ~lev~~ls~~y~----------------~~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p~~---G~I~~~g 62 (200)
T d1sgwa_ 2 KLEIRDLSVGYD----------------KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLK---GEIIYNG 62 (200)
T ss_dssp EEEEEEEEEESS----------------SEEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSE---EEEEETT
T ss_pred eEEEEEEEEEeC----------------CeEEeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccccCC---CEEEECC
Confidence 589999999993 359999999999999999999999999999999999999964 9999999
Q ss_pred ccCCChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCc---cccCCcCCccccC--
Q 006897 136 HQIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLT---HVAGSFVGDEENR-- 210 (627)
Q Consensus 136 ~~~~~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~---~~~~~~~gGe~qr-- 210 (627)
+++ .+.+.+++|+||+..+++.+|+.|++.+...++..... ++++.+.++.+++. +..++++|||+||
T Consensus 63 ~~i---~~~~~~i~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~~~LSgG~~qrv~ 135 (200)
T d1sgwa_ 63 VPI---TKVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVN----KNEIMDALESVEVLDLKKKLGELSQGTIRRVQ 135 (200)
T ss_dssp EEG---GGGGGGEEEECSSCCCCTTSBHHHHHHHHHHHTTCCCC----HHHHHHHHHHTTCCCTTSBGGGSCHHHHHHHH
T ss_pred Eeh---hHhcCcEEEEeecccCCCCcCHHHHHHHHHHhcCCccC----HHHHHHHHHHcCCcccccccCcCCCcHHHHHH
Confidence 985 35678899999999999999999999988765432222 24466677777654 4455678999999
Q ss_pred ----------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecC
Q 006897 211 ----------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSR 261 (627)
Q Consensus 211 ----------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~ 261 (627)
||+|||+.++.++++.|+++.++.+.+||.++|++ .+||++.+|++
T Consensus 136 ia~al~~~~~llllDEPt~gLD~~~~~~i~~~l~~~~~~~~~~ii~~~~~l-----~~~D~~~~l~~ 197 (200)
T d1sgwa_ 136 LASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREEL-----SYCDVNENLHK 197 (200)
T ss_dssp HHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCC-----TTSSEEEEGGG
T ss_pred HHHHHhcCCCEEEEcCcccccCHHHHHHHHHHHHHHHhCCCEEEEEEechh-----hhcchhhheee
Confidence 99999999999999999999887666666666665 36999998865
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.97 E-value=5.9e-33 Score=281.94 Aligned_cols=165 Identities=27% Similarity=0.404 Sum_probs=133.4
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCccCCChhhhcccEEEEccCCCCCCCCCH
Q 006897 84 LHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKKPAQLRKICGFVAQEDNLLPLLTV 163 (627)
Q Consensus 84 ~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~~~~~~~~r~~ig~v~Q~~~l~~~lTV 163 (627)
++||+||||+|++||++||+||||||||||+++|+|+++|++ |+|.++| +++||+|++.+++. ||
T Consensus 49 ~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~~---G~I~~~g-----------~i~~v~Q~~~l~~~-tv 113 (281)
T d1r0wa_ 49 NPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASE---GIIKHSG-----------RVSFCSQFSWIMPG-TI 113 (281)
T ss_dssp CEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSE---EEEECCS-----------CEEEECSSCCCCSE-EH
T ss_pred CeEEeCeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCcCCC---cEEEECC-----------EEEEEeccccccCc-ee
Confidence 469999999999999999999999999999999999999964 9999887 38999999999986 99
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCC-------ccc--------cCCcCCccccC------------------
Q 006897 164 KETLMFSANFRLKGMSHKEKEDRVESLMDELGL-------THV--------AGSFVGDEENR------------------ 210 (627)
Q Consensus 164 ~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL-------~~~--------~~~~~gGe~qr------------------ 210 (627)
+||+.++.. .... +.+++++..++ .+. ...++||||||
T Consensus 114 ~eni~~~~~-----~~~~----~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~LSgGqkQRv~lARaL~~~p~illLDE 184 (281)
T d1r0wa_ 114 KENIIFGVS-----YDEY----RYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDS 184 (281)
T ss_dssp HHHHTTTSC-----CCHH----HHHHHHHHTTCHHHHTTSTTGGGCEECTTCTTSCHHHHHHHHHHHHHHSCCSEEEEES
T ss_pred ecccccccc-----ccch----HHHHHHHHHHhHHHHHhchhhhhhhhhhhccCCCHHHHHHHHHHHHHHhCccchhhcC
Confidence 999987631 1222 22333333322 211 12467999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeCCHHHHHH
Q 006897 211 GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGSLELLEE 275 (627)
Q Consensus 211 PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~~ 275 (627)
||++||+.++.++++.+.+..+ .|+|+|++||+++ ..+.||||++|++|++++.|+++++.+
T Consensus 185 Pts~LD~~~~~~i~~~~~~~~~-~~~tvi~itH~~~--~l~~aDrI~vl~~G~i~~~Gt~~eL~~ 246 (281)
T d1r0wa_ 185 PFGYLDVFTEEQVFESCVCKLM-ANKTRILVTSKME--HLRKADKILILHQGSSYFYGTFSELQS 246 (281)
T ss_dssp CCCSSCHHHHHHHHHHCCCCCT-TTSEEEEECSCHH--HHHTCSEEEEEETTEEEEEECHHHHHH
T ss_pred ccccCCHHHHHHHHHHHHHHhh-CCCEEEEEechHH--HHHhCCEEEEEECCEEEEECCHHHHhc
Confidence 9999999999999976443323 4789999999996 468899999999999999999999864
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=98.95 E-value=1.6e-11 Score=113.83 Aligned_cols=48 Identities=10% Similarity=0.169 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeCC
Q 006897 220 ALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGS 269 (627)
Q Consensus 220 ~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~ 269 (627)
...+.+.+.++.++.+.|+|+++|+.. ....+|++..+.+|+++.-++
T Consensus 115 ~~~~~~~l~~~l~~~~~~il~~~h~~~--~~~~~~~i~~~~~~~i~~v~~ 162 (178)
T d1ye8a1 115 SKKFRDLVRQIMHDPNVNVVATIPIRD--VHPLVKEIRRLPGAVLIELTP 162 (178)
T ss_dssp CHHHHHHHHHHHTCTTSEEEEECCSSC--CSHHHHHHHTCTTCEEEECCT
T ss_pred hHHHHHHHHHHhccCCCEEEEEEccHH--HHHhhceEEEEeCCEEEEECC
Confidence 345556666665666899999999976 468899999999999987553
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=97.27 E-value=8.9e-06 Score=74.71 Aligned_cols=35 Identities=17% Similarity=0.321 Sum_probs=30.0
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 006897 86 ILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 86 iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
-+++.++++.+| +++|+|||||||||+|.+|.-.+
T Consensus 14 ~~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~~~L 48 (222)
T d1qhla_ 14 GFFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVTAL 48 (222)
T ss_dssp TEEEEEECHHHH-HHHHHSCCSHHHHHHHHHHHHHH
T ss_pred CEeeEEEEcCCC-eEEEECCCCCCHHHHHHHHHHHh
Confidence 467888888887 99999999999999999996443
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=97.17 E-value=7.3e-05 Score=66.70 Aligned_cols=24 Identities=38% Similarity=0.501 Sum_probs=21.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGRVR 122 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl~~ 122 (627)
+++|+|++|||||||++.|+..+.
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~l~ 27 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPALC 27 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 789999999999999999986554
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=97.10 E-value=0.0002 Score=64.10 Aligned_cols=26 Identities=27% Similarity=0.488 Sum_probs=24.0
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 006897 96 DSEILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 96 ~Ge~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
.|+++.|.||+||||||+.+.|+..+
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~La~~l 28 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEALANLP 28 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999999765
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.08 E-value=0.00012 Score=66.87 Aligned_cols=26 Identities=31% Similarity=0.678 Sum_probs=23.4
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCC
Q 006897 97 SEILAVVGPSGTGKSSLLRIISGRVR 122 (627)
Q Consensus 97 Ge~~aIiGpnGsGKSTLl~~L~Gl~~ 122 (627)
|.++.|+||||||||||++.|....+
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~~~ 27 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRERIP 27 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CeEEEEECCCCCCHHHHHHHHHhhCC
Confidence 88999999999999999999986543
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=97.00 E-value=0.00018 Score=68.05 Aligned_cols=27 Identities=41% Similarity=0.592 Sum_probs=24.3
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCCC
Q 006897 96 DSEILAVVGPSGTGKSSLLRIISGRVR 122 (627)
Q Consensus 96 ~Ge~~aIiGpnGsGKSTLl~~L~Gl~~ 122 (627)
+|+.++++|+||+|||||+|.|.|...
T Consensus 94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~ 120 (225)
T d1u0la2 94 KGKISTMAGLSGVGKSSLLNAINPGLK 120 (225)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTCC
T ss_pred cCCeEEEECCCCCCHHHHHHhhcchhh
Confidence 589999999999999999999987643
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.98 E-value=0.00011 Score=65.88 Aligned_cols=35 Identities=17% Similarity=0.320 Sum_probs=25.8
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEE
Q 006897 98 EILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSIT 132 (627)
Q Consensus 98 e~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~ 132 (627)
.+++|+|++|||||||++-|...++..+...|.|.
T Consensus 2 kii~I~G~~gSGKTTli~~l~~~L~~~g~~v~vik 36 (165)
T d1xjca_ 2 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVK 36 (165)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHhCCCeEEEEE
Confidence 37899999999999999988876654332234443
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=96.88 E-value=0.00023 Score=63.48 Aligned_cols=27 Identities=30% Similarity=0.556 Sum_probs=24.3
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 006897 95 RDSEILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 95 ~~Ge~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
+++.++.|+||+||||||+.+.|+..+
T Consensus 4 ~~~~iivl~G~~GsGKsT~a~~La~~l 30 (171)
T d1knqa_ 4 HDHHIYVLMGVSGSGKSAVASEVAHQL 30 (171)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 467899999999999999999999765
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=96.79 E-value=0.0003 Score=62.89 Aligned_cols=27 Identities=15% Similarity=0.262 Sum_probs=24.3
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 006897 95 RDSEILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 95 ~~Ge~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
++|-++.|+|++||||||+.+.|+-.+
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~La~~L 30 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARALQVTL 30 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 468999999999999999999998655
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=96.70 E-value=0.0038 Score=59.15 Aligned_cols=32 Identities=25% Similarity=0.501 Sum_probs=24.8
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHH
Q 006897 86 ILKSVSFEARDSEILAVVGPSGTGKSSLLRIIS 118 (627)
Q Consensus 86 iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~ 118 (627)
|=+|++++ +.+.++.|.|||.+||||+||.++
T Consensus 31 VpNdi~l~-~~~~~~iiTGpN~~GKSt~lk~i~ 62 (234)
T d1wb9a2 31 IANPLNLS-PQRRMLIITGPNMGGKSTYMRQTA 62 (234)
T ss_dssp CCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHH
T ss_pred cceeEEEC-CCceEEEEeccCchhhHHHHHHHH
Confidence 44555554 235789999999999999999984
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=96.66 E-value=0.00044 Score=64.57 Aligned_cols=26 Identities=35% Similarity=0.548 Sum_probs=23.0
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 006897 96 DSEILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 96 ~Ge~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
+|.++.|+||||+|||||.+.|.-..
T Consensus 1 ~G~livi~GPSG~GK~tl~~~L~~~~ 26 (205)
T d1s96a_ 1 QGTLYIVSAPSGAGKSSLIQALLKTQ 26 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhhC
Confidence 58999999999999999999987543
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=96.61 E-value=0.00043 Score=62.02 Aligned_cols=24 Identities=25% Similarity=0.477 Sum_probs=21.3
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 006897 98 EILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 98 e~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
..++|+||+|||||||.+.|+..+
T Consensus 8 K~I~i~G~~GsGKTTla~~La~~~ 31 (192)
T d1lw7a2 8 KTVAILGGESSGKSVLVNKLAAVF 31 (192)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 368999999999999999998654
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=96.60 E-value=0.003 Score=59.50 Aligned_cols=28 Identities=29% Similarity=0.586 Sum_probs=22.6
Q ss_pred eceEEEEeCCeEEEEECCCCCcHHHHHHHHH
Q 006897 88 KSVSFEARDSEILAVVGPSGTGKSSLLRIIS 118 (627)
Q Consensus 88 ~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~ 118 (627)
+|+++ . ++++.|.|||.+||||+||.++
T Consensus 29 Ndi~~--~-~~~~iiTGpN~~GKSt~lk~i~ 56 (224)
T d1ewqa2 29 NDLEM--A-HELVLITGPNMAGKSTFLRQTA 56 (224)
T ss_dssp EEEEE--S-SCEEEEESCSSSSHHHHHHHHH
T ss_pred ceEEe--C-CcEEEEECCCccccchhhhhhH
Confidence 44444 3 4689999999999999999874
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=96.60 E-value=0.0004 Score=68.33 Aligned_cols=48 Identities=19% Similarity=0.185 Sum_probs=40.6
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhhee--ecCC
Q 006897 211 GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLI--LSRG 262 (627)
Q Consensus 211 PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~v--L~~G 262 (627)
|-++|||..+..+.+.|++.++ +.-||++||.|. +.+.+|+++. +.+|
T Consensus 250 pe~~Lhp~~~~~l~~~l~~~~~--~~QviitTHsp~--~~~~~d~~~~v~~~~g 299 (308)
T d1e69a_ 250 VDSPLDDYNAERFKRLLKENSK--HTQFIVITHNKI--VMEAADLLHGVTMVNG 299 (308)
T ss_dssp CCSSCCHHHHHHHHHHHHHHTT--TSEEEEECCCTT--GGGGCSEEEEEEESSS
T ss_pred ccccCCHHHHHHHHHHHHHhcc--CCEEEEEECCHH--HHHhcccEEEEEEeCC
Confidence 6789999999999999999864 578999999997 5788998865 5566
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.55 E-value=0.00024 Score=63.67 Aligned_cols=26 Identities=27% Similarity=0.542 Sum_probs=23.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCCC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGRVRDQ 124 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl~~~~ 124 (627)
.+.|.||+|+|||||++.++..+...
T Consensus 3 ~v~ItG~~GtGKTtl~~~i~~~l~~~ 28 (189)
T d2i3ba1 3 HVFLTGPPGVGKTTLIHKASEVLKSS 28 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHC
Confidence 47899999999999999999887654
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=96.54 E-value=0.0002 Score=67.89 Aligned_cols=34 Identities=35% Similarity=0.465 Sum_probs=22.6
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEE
Q 006897 96 DSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSIT 132 (627)
Q Consensus 96 ~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~ 132 (627)
+|..++++|+||+|||||+|.|.|-..-. .|+|.
T Consensus 96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~~~---t~~vs 129 (231)
T d1t9ha2 96 QDKTTVFAGQSGVGKSSLLNAISPELGLR---TNEIS 129 (231)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC-------------
T ss_pred ccceEEEECCCCccHHHHHHhhccHhHhh---hcccc
Confidence 57899999999999999999998864321 26654
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=96.52 E-value=0.00064 Score=60.56 Aligned_cols=27 Identities=26% Similarity=0.509 Sum_probs=23.3
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 006897 95 RDSEILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 95 ~~Ge~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
++|-.++|.||+||||||+.+.|+-.+
T Consensus 3 pk~~~I~i~G~~GsGKTT~~~~La~~l 29 (174)
T d1y63a_ 3 PKGINILITGTPGTGKTSMAEMIAAEL 29 (174)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHh
Confidence 356678999999999999999998554
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.48 E-value=0.00062 Score=69.75 Aligned_cols=28 Identities=32% Similarity=0.663 Sum_probs=23.2
Q ss_pred EEEEeCCeEEEEECCCCCcHHHHHHHHH
Q 006897 91 SFEARDSEILAVVGPSGTGKSSLLRIIS 118 (627)
Q Consensus 91 sl~i~~Ge~~aIiGpnGsGKSTLl~~L~ 118 (627)
++++.++.+++|+|||||||||+|.+|+
T Consensus 19 ~i~f~~~~l~~i~G~NGsGKS~ileAi~ 46 (427)
T d1w1wa_ 19 KVGFGESNFTSIIGPNGSGKSNMMDAIS 46 (427)
T ss_dssp EEECTTCSEEEEECSTTSSHHHHHHHHH
T ss_pred EEeCCCCCEEEEECCCCCCHHHHHHHHH
Confidence 3444556699999999999999999984
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=96.47 E-value=0.00069 Score=59.06 Aligned_cols=21 Identities=33% Similarity=0.551 Sum_probs=18.9
Q ss_pred eEEEEECCCCCcHHHHHHHHH
Q 006897 98 EILAVVGPSGTGKSSLLRIIS 118 (627)
Q Consensus 98 e~~aIiGpnGsGKSTLl~~L~ 118 (627)
+++.|.||+|||||||.+.|.
T Consensus 3 klIii~G~pGsGKTTla~~L~ 23 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREFI 23 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 578899999999999999875
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=96.47 E-value=0.00072 Score=60.11 Aligned_cols=26 Identities=23% Similarity=0.477 Sum_probs=23.3
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCC
Q 006897 97 SEILAVVGPSGTGKSSLLRIISGRVR 122 (627)
Q Consensus 97 Ge~~aIiGpnGsGKSTLl~~L~Gl~~ 122 (627)
..++.|.|++||||||+.+.|+..+.
T Consensus 3 ~kiI~l~G~~GsGKsTva~~L~~~l~ 28 (178)
T d1qhxa_ 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcC
Confidence 46899999999999999999998764
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=96.33 E-value=0.0009 Score=59.13 Aligned_cols=24 Identities=25% Similarity=0.652 Sum_probs=21.5
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 006897 98 EILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 98 e~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
.++.|.||+||||||+.+.|+..+
T Consensus 3 klI~i~G~~GsGKTTva~~L~~~~ 26 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRLAAQL 26 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHc
Confidence 478999999999999999999665
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=96.33 E-value=0.00083 Score=58.67 Aligned_cols=23 Identities=35% Similarity=0.635 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
.+.|+||+||||||+.+.|+-.+
T Consensus 4 ~I~l~G~~GsGKSTvak~La~~L 26 (169)
T d1kaga_ 4 NIFLVGPMGAGKSTIGRQLAQQL 26 (169)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 46788999999999999998654
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.33 E-value=0.00077 Score=61.22 Aligned_cols=24 Identities=33% Similarity=0.544 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGRVR 122 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl~~ 122 (627)
++||-||+|||||||.+.|.-.+.
T Consensus 24 iIgI~G~~GSGKSTla~~L~~~l~ 47 (198)
T d1rz3a_ 24 VLGIDGLSRSGKTTLANQLSQTLR 47 (198)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 789999999999999999985543
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=96.32 E-value=0.00082 Score=59.57 Aligned_cols=22 Identities=23% Similarity=0.539 Sum_probs=19.2
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 006897 100 LAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 100 ~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
++|+||+||||||+.+.|+-.+
T Consensus 7 I~i~G~pGsGKTTia~~La~~l 28 (173)
T d1rkba_ 7 ILLTGTPGVGKTTLGKELASKS 28 (173)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 5799999999999999998543
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=96.31 E-value=0.00096 Score=59.76 Aligned_cols=26 Identities=19% Similarity=0.468 Sum_probs=22.7
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCCCC
Q 006897 98 EILAVVGPSGTGKSSLLRIISGRVRD 123 (627)
Q Consensus 98 e~~aIiGpnGsGKSTLl~~L~Gl~~~ 123 (627)
.+++|.|++||||||+.+.|+-.+..
T Consensus 2 kiI~i~G~~GsGKsT~~~~L~~~l~~ 27 (190)
T d1khta_ 2 KVVVVTGVPGVGSTTSSQLAMDNLRK 27 (190)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 58999999999999999999866543
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=96.22 E-value=0.00059 Score=65.99 Aligned_cols=29 Identities=24% Similarity=0.265 Sum_probs=24.7
Q ss_pred CHHHHHHHHHHHHHHHHcCCCEEEEEccC
Q 006897 216 DSTSALQVIELLASMAKAKQRTVVLSIHQ 244 (627)
Q Consensus 216 D~~~~~~i~~~L~~l~~~~g~Tii~~tH~ 244 (627)
|......++..|++++++.|.++|++.|-
T Consensus 151 ~~~~~~~~~~~l~~la~~~~~~vi~v~H~ 179 (274)
T d1nlfa_ 151 ASGPMAQVIGRMEAIAADTGCSIVFLHHA 179 (274)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCEEEEEEEC
T ss_pred chhhHHHHHHHHHHHhhcCCCceehhhhc
Confidence 66677889999999998889999999884
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.17 E-value=0.00075 Score=61.30 Aligned_cols=26 Identities=19% Similarity=0.289 Sum_probs=23.5
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 006897 96 DSEILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 96 ~Ge~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
+|-++.|+|++||||||+.+.|+-.+
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~~l 43 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEEYL 43 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 58899999999999999999998655
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=96.14 E-value=0.001 Score=60.80 Aligned_cols=23 Identities=35% Similarity=0.502 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
.++|+|++|+|||||+|.|.|.-
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g~~ 47 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCCCHHHHHHHhcCCC
Confidence 49999999999999999999863
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.07 E-value=0.0013 Score=59.99 Aligned_cols=22 Identities=45% Similarity=0.794 Sum_probs=19.4
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 006897 100 LAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 100 ~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
+.|+||||||||||++.|+-..
T Consensus 4 Ivl~GpsG~GK~tl~~~L~~~~ 25 (186)
T d1gkya_ 4 IVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 6899999999999999997543
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=96.00 E-value=0.0015 Score=59.57 Aligned_cols=24 Identities=25% Similarity=0.411 Sum_probs=21.2
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcC
Q 006897 97 SEILAVVGPSGTGKSSLLRIISGR 120 (627)
Q Consensus 97 Ge~~aIiGpnGsGKSTLl~~L~Gl 120 (627)
..+++|+||+||||||+.+.|+-.
T Consensus 6 p~iI~i~G~pGSGKsT~a~~La~~ 29 (194)
T d1qf9a_ 6 PNVVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999999843
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.00 E-value=0.0017 Score=58.95 Aligned_cols=23 Identities=17% Similarity=0.486 Sum_probs=20.3
Q ss_pred eEEEEECCCCCcHHHHHHHHHcC
Q 006897 98 EILAVVGPSGTGKSSLLRIISGR 120 (627)
Q Consensus 98 e~~aIiGpnGsGKSTLl~~L~Gl 120 (627)
..+.|+||||+|||||++-|...
T Consensus 4 k~ivl~Gpsg~GK~tl~~~L~~~ 26 (178)
T d1kgda_ 4 KTLVLLGAHGVGRRHIKNTLITK 26 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHh
Confidence 47899999999999999988743
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=95.96 E-value=0.001 Score=60.19 Aligned_cols=21 Identities=38% Similarity=0.645 Sum_probs=19.5
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 006897 100 LAVVGPSGTGKSSLLRIISGR 120 (627)
Q Consensus 100 ~aIiGpnGsGKSTLl~~L~Gl 120 (627)
+||+|++++|||||+|.|+|.
T Consensus 4 VaiiG~~nvGKSSLin~L~~~ 24 (185)
T d1lnza2 4 VGLVGFPSVGKSTLLSVVSSA 24 (185)
T ss_dssp EEEESSTTSSHHHHHHHSEEE
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 799999999999999999874
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=95.95 E-value=0.0016 Score=61.17 Aligned_cols=22 Identities=32% Similarity=0.542 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGR 120 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl 120 (627)
+++|+|+.|||||||++.|...
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~~ 23 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGRY 23 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCcHHHHHHHHHHH
Confidence 6899999999999999999743
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=95.93 E-value=0.0019 Score=57.63 Aligned_cols=23 Identities=26% Similarity=0.471 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
.++|+|+.|+|||||++.|+|..
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~~ 24 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKKK 24 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999854
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.87 E-value=0.0018 Score=59.26 Aligned_cols=21 Identities=43% Similarity=0.759 Sum_probs=18.7
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 006897 100 LAVVGPSGTGKSSLLRIISGR 120 (627)
Q Consensus 100 ~aIiGpnGsGKSTLl~~L~Gl 120 (627)
++|+||||||||||.+.|+-.
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~~ 23 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQE 23 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 679999999999999998754
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.86 E-value=0.0019 Score=59.84 Aligned_cols=23 Identities=30% Similarity=0.442 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
++||-|++|||||||.+.|+-.+
T Consensus 4 iIgI~G~~gSGKSTla~~L~~~l 26 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQLL 26 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999997654
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.85 E-value=0.0024 Score=58.14 Aligned_cols=28 Identities=18% Similarity=0.202 Sum_probs=25.3
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHHc
Q 006897 92 FEARDSEILAVVGPSGTGKSSLLRIISG 119 (627)
Q Consensus 92 l~i~~Ge~~aIiGpnGsGKSTLl~~L~G 119 (627)
.-+++|+++.|.||+|+|||||+.-++.
T Consensus 18 GGi~~G~v~~i~G~~GsGKT~l~l~la~ 45 (242)
T d1n0wa_ 18 GGIETGSITEMFGEFRTGKTQICHTLAV 45 (242)
T ss_dssp TSEETTSEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcCCEEEEEEeCCCCCHHHHHHHHHH
Confidence 4689999999999999999999988764
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=95.84 E-value=0.0016 Score=58.59 Aligned_cols=23 Identities=30% Similarity=0.550 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
-++|+|++|+|||||+|.|.|..
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~~ 24 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGKK 24 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999863
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=95.80 E-value=0.0021 Score=57.10 Aligned_cols=22 Identities=32% Similarity=0.608 Sum_probs=19.6
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 006897 100 LAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 100 ~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
+.|+|++||||||+.+.|+-.+
T Consensus 3 I~liG~~GsGKsTi~k~La~~l 24 (161)
T d1viaa_ 3 IVFIGFMGSGKSTLARALAKDL 24 (161)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5788999999999999998654
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=95.77 E-value=0.0023 Score=57.18 Aligned_cols=22 Identities=41% Similarity=0.723 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGR 120 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl 120 (627)
+++|+|.+|+|||||+|.|.|.
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~~ 28 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLGQ 28 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999999975
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.73 E-value=0.0025 Score=58.26 Aligned_cols=25 Identities=20% Similarity=0.359 Sum_probs=21.8
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCC
Q 006897 97 SEILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 97 Ge~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
-.++.|+||+||||||+.+.|+-.+
T Consensus 8 ~~iI~i~GppGSGKsT~a~~La~~~ 32 (196)
T d1ukza_ 8 VSVIFVLGGPGAGKGTQCEKLVKDY 32 (196)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 3479999999999999999998654
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=95.72 E-value=0.0025 Score=57.21 Aligned_cols=23 Identities=39% Similarity=0.596 Sum_probs=21.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
+++|+|++|+|||||++.|.|..
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~~ 29 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGVK 29 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 69999999999999999999863
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.71 E-value=0.0023 Score=58.77 Aligned_cols=23 Identities=30% Similarity=0.663 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
.++|+|++|||||||++.|.|-.
T Consensus 5 ~V~lvG~~n~GKTSLln~l~~~~ 27 (209)
T d1nrjb_ 5 SIIIAGPQNSGKTSLLTLLTTDS 27 (209)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999998753
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.66 E-value=0.0023 Score=55.62 Aligned_cols=22 Identities=27% Similarity=0.536 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGR 120 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl 120 (627)
.++|+|++|+|||||++.|.+-
T Consensus 2 KI~liG~~nvGKSSLln~l~~~ 23 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKND 23 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4679999999999999999875
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=95.65 E-value=0.0025 Score=57.41 Aligned_cols=22 Identities=36% Similarity=0.593 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGR 120 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl 120 (627)
.+||+|++|+|||||++.|+|.
T Consensus 10 kV~iiG~~~~GKSTLin~l~~~ 31 (186)
T d1mkya2 10 KVAIVGRPNVGKSTLFNAILNK 31 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 4799999999999999999875
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=95.61 E-value=0.0019 Score=58.99 Aligned_cols=26 Identities=35% Similarity=0.552 Sum_probs=23.2
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcC
Q 006897 95 RDSEILAVVGPSGTGKSSLLRIISGR 120 (627)
Q Consensus 95 ~~Ge~~aIiGpnGsGKSTLl~~L~Gl 120 (627)
+++.++.|+||+||||||+.+.|+-.
T Consensus 6 ~~~~iI~l~G~pGSGKsT~a~~La~~ 31 (194)
T d3adka_ 6 KKSKIIFVVGGPGSGKGTQCEKIVQK 31 (194)
T ss_dssp HTSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 46789999999999999999999854
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=95.61 E-value=0.0025 Score=55.46 Aligned_cols=21 Identities=24% Similarity=0.409 Sum_probs=18.9
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 006897 100 LAVVGPSGTGKSSLLRIISGR 120 (627)
Q Consensus 100 ~aIiGpnGsGKSTLl~~L~Gl 120 (627)
++|+|++|+|||||++.+.+-
T Consensus 3 ivlvG~~~vGKSsLi~~l~~~ 23 (160)
T d1r8sa_ 3 ILMVGLDAAGKTTILYKLKLG 23 (160)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 679999999999999999754
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=95.60 E-value=0.0018 Score=57.74 Aligned_cols=23 Identities=26% Similarity=0.498 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
.++|+|++|||||||++.|.|-.
T Consensus 15 kI~lvG~~~vGKTsLl~~l~~~~ 37 (186)
T d1f6ba_ 15 KLVFLGLDNAGKTTLLHMLKDDR 37 (186)
T ss_dssp EEEEEEETTSSHHHHHHHHSCC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999998753
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=95.60 E-value=0.0018 Score=58.27 Aligned_cols=22 Identities=36% Similarity=0.510 Sum_probs=20.2
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 006897 100 LAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 100 ~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
+||+|.+|+|||||++.|+|..
T Consensus 4 VaivG~~nvGKSTLin~L~~~~ 25 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTRAH 25 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCSSC
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 7999999999999999998753
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=95.55 E-value=0.0027 Score=55.61 Aligned_cols=22 Identities=23% Similarity=0.466 Sum_probs=20.0
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 006897 100 LAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 100 ~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
++|+|++|+|||||++.+.+-.
T Consensus 8 I~ivG~~~vGKSSLi~~~~~~~ 29 (169)
T d1upta_ 8 ILILGLDGAGKTTILYRLQVGE 29 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 7899999999999999998753
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=95.53 E-value=0.0034 Score=56.94 Aligned_cols=25 Identities=20% Similarity=0.384 Sum_probs=22.0
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHc
Q 006897 95 RDSEILAVVGPSGTGKSSLLRIISG 119 (627)
Q Consensus 95 ~~Ge~~aIiGpnGsGKSTLl~~L~G 119 (627)
++|=.+.|+||.||||||+.+.|+-
T Consensus 1 p~~~riil~G~pGSGKsT~a~~La~ 25 (190)
T d1ak2a1 1 PKGVRAVLLGPPGAGKGTQAPKLAK 25 (190)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHHH
Confidence 3566788999999999999999984
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=95.53 E-value=0.003 Score=56.35 Aligned_cols=22 Identities=23% Similarity=0.456 Sum_probs=19.2
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 006897 100 LAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 100 ~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
+.|+|++||||||+.+.|+-.+
T Consensus 5 Iil~G~~GsGKSTia~~LA~~L 26 (170)
T d1e6ca_ 5 IFMVGARGCGMTTVGRELARAL 26 (170)
T ss_dssp EEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999998544
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=95.45 E-value=0.0035 Score=54.91 Aligned_cols=23 Identities=39% Similarity=0.654 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
-++|+|+.|+|||||++.|+|.-
T Consensus 3 kI~lvG~~nvGKSsLin~l~~~~ 25 (161)
T d2gj8a1 3 KVVIAGRPNAGKSSLLNALAGRE 25 (161)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999864
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.45 E-value=0.0033 Score=55.81 Aligned_cols=22 Identities=32% Similarity=0.533 Sum_probs=19.3
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 006897 100 LAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 100 ~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
+.|+|++||||||+.+.|+-.+
T Consensus 4 IvliG~~G~GKSTig~~La~~l 25 (165)
T d2iyva1 4 AVLVGLPGSGKSTIGRRLAKAL 25 (165)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 4578999999999999998655
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.44 E-value=0.0036 Score=56.93 Aligned_cols=22 Identities=27% Similarity=0.469 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGR 120 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl 120 (627)
++.|+||.||||||..+.|+-.
T Consensus 3 iI~i~GppGSGKsT~a~~La~~ 24 (194)
T d1teva_ 3 VVFVLGGPGAGKGTQCARIVEK 24 (194)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6799999999999999999853
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=95.40 E-value=0.0035 Score=56.16 Aligned_cols=26 Identities=31% Similarity=0.446 Sum_probs=22.3
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCCCC
Q 006897 98 EILAVVGPSGTGKSSLLRIISGRVRD 123 (627)
Q Consensus 98 e~~aIiGpnGsGKSTLl~~L~Gl~~~ 123 (627)
.++.|.|++||||||+.+.|+..+..
T Consensus 2 kiivi~G~~GsGKTT~~~~La~~L~~ 27 (194)
T d1nksa_ 2 KIGIVTGIPGVGKSTVLAKVKEILDN 27 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 36788999999999999999977653
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=95.39 E-value=0.0031 Score=57.29 Aligned_cols=22 Identities=18% Similarity=0.424 Sum_probs=19.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGR 120 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl 120 (627)
.+.|+||.||||||+.+.|+-.
T Consensus 5 ~I~i~GppGsGKsT~a~~La~~ 26 (189)
T d1zaka1 5 KVMISGAPASGKGTQCELIKTK 26 (189)
T ss_dssp CEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4679999999999999999743
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.32 E-value=0.0041 Score=55.69 Aligned_cols=22 Identities=27% Similarity=0.431 Sum_probs=19.4
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 006897 100 LAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 100 ~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
+.|+||.||||||+.+.|+-.+
T Consensus 3 I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1zina1 3 LVLMGLPGAGKGTQAEKIVAAY 24 (182)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 6799999999999999997543
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=95.26 E-value=0.0032 Score=62.70 Aligned_cols=39 Identities=21% Similarity=0.352 Sum_probs=30.8
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEE
Q 006897 92 FEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITV 133 (627)
Q Consensus 92 l~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i 133 (627)
.-++.|.-+.|.||.||||||||+.|.+.+++.. --|.+
T Consensus 161 ~~v~~~~nili~G~tgSGKTT~l~al~~~i~~~~---rivti 199 (323)
T d1g6oa_ 161 DGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEE---RIISI 199 (323)
T ss_dssp HHHHHTCCEEEEESTTSSHHHHHHHHGGGSCTTC---CEEEE
T ss_pred HHHHhCCCEEEEeeccccchHHHHHHhhhccccc---ceeec
Confidence 3345566689999999999999999999988753 44555
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=95.25 E-value=0.0045 Score=58.99 Aligned_cols=35 Identities=23% Similarity=0.360 Sum_probs=26.9
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 96 DSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 96 ~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
....+.|.||+|||||||.+.|++.+.. +-+.++.
T Consensus 31 ~P~~ilL~GpPGtGKT~la~~la~~~~~-----~~~~i~~ 65 (273)
T d1gvnb_ 31 SPTAFLLGGQPGSGKTSLRSAIFEETQG-----NVIVIDN 65 (273)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHTTT-----CCEEECT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhhc-----ceEEEec
Confidence 3456889999999999999999987642 3455554
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.25 E-value=0.0045 Score=55.62 Aligned_cols=24 Identities=29% Similarity=0.515 Sum_probs=21.2
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHH
Q 006897 95 RDSEILAVVGPSGTGKSSLLRIIS 118 (627)
Q Consensus 95 ~~Ge~~aIiGpnGsGKSTLl~~L~ 118 (627)
++-+++.++|++||||||+.+-++
T Consensus 12 ~~p~liil~G~pGsGKST~a~~l~ 35 (172)
T d1yj5a2 12 PNPEVVVAVGFPGAGKSTFIQEHL 35 (172)
T ss_dssp SSCCEEEEECCTTSSHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH
Confidence 455799999999999999999885
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=95.22 E-value=0.0024 Score=57.17 Aligned_cols=23 Identities=35% Similarity=0.462 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
.++|+|++++|||||+|.|.|..
T Consensus 18 ~I~lvG~~NvGKSSL~n~L~~~~ 40 (188)
T d1puia_ 18 EVAFAGRSNAGKSSALNTLTNQK 40 (188)
T ss_dssp EEEEEECTTSSHHHHHTTTCCC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999998753
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=95.22 E-value=0.0045 Score=57.40 Aligned_cols=23 Identities=35% Similarity=0.657 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
+++|-||+||||||+.+.|+-.+
T Consensus 5 ~IaIdGp~GsGKgT~ak~La~~l 27 (223)
T d1q3ta_ 5 QIAIDGPASSGKSTVAKIIAKDF 27 (223)
T ss_dssp EEEEECSSCSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999998544
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=95.16 E-value=0.0044 Score=54.63 Aligned_cols=22 Identities=27% Similarity=0.579 Sum_probs=20.0
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 006897 100 LAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 100 ~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
++|+|+.|+|||||++.|.|-.
T Consensus 5 i~ivG~~~~GKTsLi~~l~~~~ 26 (165)
T d1ksha_ 5 LLMLGLDNAGKTTILKKFNGED 26 (165)
T ss_dssp EEEECSTTSSHHHHHHHHTTCC
T ss_pred EEEECCCCCCHHHHHHHHcCCC
Confidence 7899999999999999998753
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=95.07 E-value=0.0054 Score=55.19 Aligned_cols=23 Identities=22% Similarity=0.369 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
.+.|+||.||||||+.+.|+-.+
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1s3ga1 2 NIVLMGLPGAGKGTQADRIVEKY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 36799999999999999998544
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=95.07 E-value=0.0053 Score=56.59 Aligned_cols=23 Identities=30% Similarity=0.730 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
+++|.||+||||||+-+.|+-.+
T Consensus 5 iI~I~GppGSGKgT~ak~La~~~ 27 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEAL 27 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 88999999999999999998654
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=95.04 E-value=0.0056 Score=55.94 Aligned_cols=24 Identities=17% Similarity=0.412 Sum_probs=21.2
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 006897 98 EILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 98 e~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
.+++++|.+|||||||.+.|+..+
T Consensus 3 ~li~l~GlpgsGKSTla~~L~~~l 26 (213)
T d1bifa1 3 TLIVMVGLPARGKTYISKKLTRYL 26 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
Confidence 378999999999999999998654
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=94.98 E-value=0.005 Score=55.81 Aligned_cols=20 Identities=30% Similarity=0.689 Sum_probs=18.9
Q ss_pred EEEEECCCCCcHHHHHHHHH
Q 006897 99 ILAVVGPSGTGKSSLLRIIS 118 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~ 118 (627)
++||.|++||||||+.+.|.
T Consensus 5 IIgitG~~gSGKstva~~l~ 24 (191)
T d1uf9a_ 5 IIGITGNIGSGKSTVAALLR 24 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 78999999999999999986
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=94.91 E-value=0.0053 Score=55.77 Aligned_cols=24 Identities=21% Similarity=0.290 Sum_probs=21.6
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 006897 98 EILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 98 e~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
-+++|-|+.||||||+++.|+..+
T Consensus 10 ~~I~ieG~~GsGKTTl~~~L~~~l 33 (197)
T d2vp4a1 10 FTVLIEGNIGSGKTTYLNHFEKYK 33 (197)
T ss_dssp EEEEEECSTTSCHHHHHHTTGGGT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 489999999999999999998654
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=94.91 E-value=0.014 Score=56.01 Aligned_cols=43 Identities=16% Similarity=0.294 Sum_probs=32.3
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHHcCC-CCCCCccceEEECCcc
Q 006897 92 FEARDSEILAVVGPSGTGKSSLLRIISGRV-RDQDFDPRSITVNCHQ 137 (627)
Q Consensus 92 l~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~-~~~~~~~G~i~i~g~~ 137 (627)
.=+++|.++-|.||+|+|||||+-.++.-. ++.. --++++.+.
T Consensus 49 GGi~~g~itei~G~~gsGKTtl~l~~~~~~q~~g~---~~vyidtE~ 92 (263)
T d1u94a1 49 GGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGK---TCAFIDAEH 92 (263)
T ss_dssp SSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTC---CEEEEESSC
T ss_pred CCccCceEEEEecCCCcHHHHHHHHHHHHHHcCCC---EEEEEcccc
Confidence 679999999999999999999987665433 2321 346777765
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.87 E-value=0.005 Score=57.68 Aligned_cols=27 Identities=19% Similarity=0.357 Sum_probs=24.0
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCCC
Q 006897 96 DSEILAVVGPSGTGKSSLLRIISGRVR 122 (627)
Q Consensus 96 ~Ge~~aIiGpnGsGKSTLl~~L~Gl~~ 122 (627)
++.+++|-|+-||||||+++.|+..+.
T Consensus 1 ~~k~I~ieG~dGsGKST~~~~L~~~l~ 27 (241)
T d1p5zb_ 1 RIKKISIEGNIAAGKSTFVNILKQLCE 27 (241)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHh
Confidence 467899999999999999999997764
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=94.84 E-value=0.0073 Score=56.02 Aligned_cols=27 Identities=22% Similarity=0.300 Sum_probs=23.9
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 006897 95 RDSEILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 95 ~~Ge~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
++|-++-|.|.||||||||.+.|.-.+
T Consensus 22 ~kg~vIwltGlsGsGKTTia~~L~~~l 48 (208)
T d1m7ga_ 22 QRGLTIWLTGLSASGKSTLAVELEHQL 48 (208)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 678899999999999999999997443
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.83 E-value=0.0065 Score=54.52 Aligned_cols=22 Identities=23% Similarity=0.582 Sum_probs=19.4
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 006897 100 LAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 100 ~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
+.|+||.||||||+.+.|+-.+
T Consensus 3 I~i~G~pGsGKsT~a~~La~~~ 24 (181)
T d2cdna1 3 VLLLGPPGAGKGTQAVKLAEKL 24 (181)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 6799999999999999998543
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=94.80 E-value=0.0047 Score=61.51 Aligned_cols=28 Identities=29% Similarity=0.405 Sum_probs=23.6
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCC
Q 006897 95 RDSEILAVVGPSGTGKSSLLRIISGRVR 122 (627)
Q Consensus 95 ~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~ 122 (627)
...-++||.||.|||||||++.|...+.
T Consensus 52 ~~~~~IgitG~pGaGKSTLi~~l~~~~~ 79 (327)
T d2p67a1 52 GNTLRLGVTGTPGAGKSTFLEAFGMLLI 79 (327)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCceEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 3467899999999999999999985543
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=94.79 E-value=0.0061 Score=54.83 Aligned_cols=22 Identities=23% Similarity=0.499 Sum_probs=20.3
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 006897 100 LAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 100 ~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
+||+|+..||||||++.|.|..
T Consensus 8 IaiiG~~naGKSTL~n~L~~~~ 29 (179)
T d1wb1a4 8 LGIFGHIDHGKTTLSKVLTEIA 29 (179)
T ss_dssp EEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEeCCCCcHHHHHHHHHHhc
Confidence 8999999999999999999753
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=94.73 E-value=0.0067 Score=54.32 Aligned_cols=22 Identities=18% Similarity=0.360 Sum_probs=19.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGR 120 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl 120 (627)
.+.|+||.||||||..+.|+-.
T Consensus 2 ~I~i~G~pGSGKsT~~~~La~~ 23 (179)
T d1e4va1 2 RIILLGAPVAGKGTQAQFIMEK 23 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3679999999999999999843
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.73 E-value=0.0063 Score=55.83 Aligned_cols=22 Identities=23% Similarity=0.285 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGR 120 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl 120 (627)
-++|+|+.|+|||||++.|.+-
T Consensus 2 ~V~ivG~~~~GKTsLl~~l~~~ 23 (207)
T d2fh5b1 2 AVLFVGLCDSGKTLLFVRLLTG 23 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999999864
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=94.73 E-value=0.0061 Score=58.50 Aligned_cols=23 Identities=39% Similarity=0.572 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
.++|+|.+|+|||||+|.|.|.-
T Consensus 34 ~I~LvG~tg~GKSSliN~ilg~~ 56 (257)
T d1h65a_ 34 TILVMGKGGVGKSSTVNSIIGER 56 (257)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 48899999999999999999964
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=94.62 E-value=0.006 Score=60.12 Aligned_cols=43 Identities=19% Similarity=0.373 Sum_probs=32.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCccCCChhhhcccEEEEccCCCCCC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKKPAQLRKICGFVAQEDNLLP 159 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~~~~~~~~r~~ig~v~Q~~~l~~ 159 (627)
++||-|++||||||+.+.|..++.... -...+..+++|+.+.+
T Consensus 82 iIGIaG~sgSGKSTla~~L~~lL~~~~------------------~~~~v~~Is~D~F~~~ 124 (308)
T d1sq5a_ 82 IISIAGSVAVGKSTTARVLQALLSRWP------------------EHRRVELITTDGFLHP 124 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHTTST------------------TCCCEEEEEGGGGBCC
T ss_pred EEEEeCCCCCCCcHHHHHHHHHHhhhc------------------CCCceEEEeeeeeECC
Confidence 899999999999999999987664210 0123677888877665
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=94.62 E-value=0.0021 Score=56.42 Aligned_cols=22 Identities=32% Similarity=0.519 Sum_probs=20.2
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 006897 100 LAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 100 ~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
++|+|++|+|||||++.|+|.-
T Consensus 3 I~liG~~n~GKSSLin~l~g~~ 24 (160)
T d1xzpa2 3 MVIVGKPNVGKSTLLNRLLNED 24 (160)
T ss_dssp EEEECCHHHHTCHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 7899999999999999999853
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.61 E-value=0.0083 Score=55.86 Aligned_cols=27 Identities=26% Similarity=0.287 Sum_probs=24.4
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHH
Q 006897 92 FEARDSEILAVVGPSGTGKSSLLRIIS 118 (627)
Q Consensus 92 l~i~~Ge~~aIiGpnGsGKSTLl~~L~ 118 (627)
.=+++|+++.|.||+|||||||..-++
T Consensus 29 GGi~~G~~~li~G~pGsGKT~l~lq~~ 55 (251)
T d1szpa2 29 GGVETGSITELFGEFRTGKSQLCHTLA 55 (251)
T ss_dssp SSEESSSEEEEEESTTSSHHHHHHHHT
T ss_pred CCCcCCeEEEEEcCCCCCHHHHHHHHH
Confidence 359999999999999999999998775
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=94.61 E-value=0.0071 Score=53.60 Aligned_cols=22 Identities=27% Similarity=0.412 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGR 120 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl 120 (627)
.++|+|.+|||||||++.|.|.
T Consensus 17 kI~vvG~~~~GKSsLi~rl~~~ 38 (177)
T d1zj6a1 17 KVIIVGLDNAGKTTILYQFSMN 38 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4779999999999999999875
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=94.54 E-value=0.0077 Score=53.05 Aligned_cols=21 Identities=29% Similarity=0.577 Sum_probs=18.5
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 006897 100 LAVVGPSGTGKSSLLRIISGR 120 (627)
Q Consensus 100 ~aIiGpnGsGKSTLl~~L~Gl 120 (627)
++++|++|+|||||++.+.+-
T Consensus 5 i~i~G~~~~GKTsLl~~l~~~ 25 (164)
T d1zd9a1 5 LTLVGLQYSGKTTFVNVIASG 25 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 679999999999999988653
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=94.47 E-value=0.0096 Score=54.15 Aligned_cols=23 Identities=26% Similarity=0.476 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
.+.|+||.||||||+.+.|+-.+
T Consensus 8 rIiliG~PGSGKtT~a~~La~~~ 30 (189)
T d2ak3a1 8 RAAIMGAPGSGKGTVSSRITKHF 30 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHB
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 56799999999999999998543
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.46 E-value=0.0089 Score=55.38 Aligned_cols=28 Identities=21% Similarity=0.331 Sum_probs=24.4
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCC
Q 006897 95 RDSEILAVVGPSGTGKSSLLRIISGRVR 122 (627)
Q Consensus 95 ~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~ 122 (627)
++|-+++|-|+-||||||+.+.|...+.
T Consensus 1 ~rG~lI~ieG~dGsGKsT~~~~L~~~L~ 28 (209)
T d1nn5a_ 1 RRGALIVLEGVDRAGKSTQSRKLVEALC 28 (209)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCeeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4788999999999999999999976553
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.44 E-value=0.0099 Score=53.34 Aligned_cols=21 Identities=29% Similarity=0.662 Sum_probs=18.8
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 006897 100 LAVVGPSGTGKSSLLRIISGR 120 (627)
Q Consensus 100 ~aIiGpnGsGKSTLl~~L~Gl 120 (627)
+.|+||.||||||+.+.|+-.
T Consensus 5 Ivl~G~pGSGKtT~a~~La~~ 25 (180)
T d1akya1 5 MVLIGPPGAGKGTQAPNLQER 25 (180)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 568999999999999999854
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=94.40 E-value=0.0094 Score=54.88 Aligned_cols=20 Identities=25% Similarity=0.657 Sum_probs=18.8
Q ss_pred EEEEECCCCCcHHHHHHHHH
Q 006897 99 ILAVVGPSGTGKSSLLRIIS 118 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~ 118 (627)
++||.|+.||||||+.+.+.
T Consensus 4 iIgITG~igSGKStv~~~l~ 23 (205)
T d1jjva_ 4 IVGLTGGIGSGKTTIANLFT 23 (205)
T ss_dssp EEEEECSTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999999985
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=94.32 E-value=0.01 Score=54.64 Aligned_cols=27 Identities=19% Similarity=0.425 Sum_probs=23.9
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCCC
Q 006897 96 DSEILAVVGPSGTGKSSLLRIISGRVR 122 (627)
Q Consensus 96 ~Ge~~aIiGpnGsGKSTLl~~L~Gl~~ 122 (627)
+|.+++|-|+-||||||+++.|+-.+.
T Consensus 1 rgkfIviEG~dGsGKsT~~~~L~~~L~ 27 (210)
T d4tmka_ 1 RSKYIVIEGLEGAGKTTARNVVVETLE 27 (210)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 588999999999999999999986553
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=94.23 E-value=0.012 Score=54.39 Aligned_cols=26 Identities=23% Similarity=0.450 Sum_probs=21.1
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 006897 96 DSEILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 96 ~Ge~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
++.+++++||+|+||||.+-=|+-..
T Consensus 5 ~~~vi~lvGptGvGKTTTiaKLA~~~ 30 (207)
T d1okkd2 5 KGRVVLVVGVNGVGKTTTIAKLGRYY 30 (207)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 46799999999999999876666443
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.11 E-value=0.011 Score=52.45 Aligned_cols=21 Identities=33% Similarity=0.596 Sum_probs=18.9
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 006897 100 LAVVGPSGTGKSSLLRIISGR 120 (627)
Q Consensus 100 ~aIiGpnGsGKSTLl~~L~Gl 120 (627)
++|+|++|+|||||++.+.+-
T Consensus 5 i~~vG~~~vGKSsLi~~~~~~ 25 (175)
T d1ky3a_ 5 VIILGDSGVGKTSLMHRYVND 25 (175)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHcC
Confidence 789999999999999998753
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=94.04 E-value=0.012 Score=54.85 Aligned_cols=22 Identities=27% Similarity=0.557 Sum_probs=19.8
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 006897 100 LAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 100 ~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
+.|.||+|+|||||.++|+..+
T Consensus 48 lll~Gp~G~GKTtla~~iak~l 69 (231)
T d1iqpa2 48 LLFAGPPGVGKTTAALALAREL 69 (231)
T ss_dssp EEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHH
Confidence 6799999999999999998654
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=94.02 E-value=0.012 Score=52.18 Aligned_cols=20 Identities=30% Similarity=0.509 Sum_probs=18.3
Q ss_pred EEEECCCCCcHHHHHHHHHc
Q 006897 100 LAVVGPSGTGKSSLLRIISG 119 (627)
Q Consensus 100 ~aIiGpnGsGKSTLl~~L~G 119 (627)
++++|++|+|||||++.+.+
T Consensus 8 i~vvG~~~vGKTsLi~~l~~ 27 (169)
T d3raba_ 8 ILIIGNSSVGKTSFLFRYAD 27 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHc
Confidence 78999999999999998864
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.01 E-value=0.0078 Score=61.10 Aligned_cols=46 Identities=7% Similarity=0.083 Sum_probs=39.2
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheee
Q 006897 211 GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLIL 259 (627)
Q Consensus 211 PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL 259 (627)
|.++||+..+..+.+.|++++. .+.-+|+|||+|. +.+.+|+.+.+
T Consensus 363 ~d~~Ld~~~~~~~~~~l~~~~~-~~~Q~I~iTH~~~--~~~~ad~~~~V 408 (427)
T d1w1wa_ 363 VDAALDITNVQRIAAYIRRHRN-PDLQFIVISLKNT--MFEKSDALVGV 408 (427)
T ss_dssp TTTTCCHHHHHHHHHHHHHHCB-TTBEEEEECSCHH--HHTTCSEEEEE
T ss_pred CCCCCCHHHHHHHHHHHHHHhC-CCCEEEEEeCCHH--HHHhcccEEEE
Confidence 7899999999999999998853 3556999999986 78999997754
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.01 E-value=0.014 Score=55.02 Aligned_cols=23 Identities=22% Similarity=0.548 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
.+.|.||+|+||||+.++|+..+
T Consensus 54 ~lll~GPpG~GKTt~a~~la~~~ 76 (253)
T d1sxja2 54 AAMLYGPPGIGKTTAAHLVAQEL 76 (253)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999754
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.97 E-value=0.011 Score=60.39 Aligned_cols=22 Identities=41% Similarity=0.690 Sum_probs=20.8
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 006897 100 LAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 100 ~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
+||+|.+|+|||||+|.|.|.-
T Consensus 59 Iai~G~~n~GKSSLiNaL~G~~ 80 (400)
T d1tq4a_ 59 VAVTGETGSGKSSFINTLRGIG 80 (400)
T ss_dssp EEEEECTTSSHHHHHHHHHTCC
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 8999999999999999999964
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=93.96 E-value=0.01 Score=52.62 Aligned_cols=22 Identities=23% Similarity=0.530 Sum_probs=19.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGR 120 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl 120 (627)
.++++|+.|+|||||++.+.+-
T Consensus 18 kI~vvG~~~vGKSsLi~~l~~~ 39 (176)
T d1fzqa_ 18 RILLLGLDNAGKTTLLKQLASE 39 (176)
T ss_dssp EEEEEESTTSSHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3789999999999999999764
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=93.94 E-value=0.016 Score=54.35 Aligned_cols=26 Identities=27% Similarity=0.447 Sum_probs=23.2
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHH
Q 006897 93 EARDSEILAVVGPSGTGKSSLLRIIS 118 (627)
Q Consensus 93 ~i~~Ge~~aIiGpnGsGKSTLl~~L~ 118 (627)
=+++|+++.|.||+|||||||.--++
T Consensus 32 Glp~G~~~li~G~pGsGKT~~~lq~~ 57 (254)
T d1pzna2 32 GIETQAITEVFGEFGSGKTQLAHTLA 57 (254)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHH
T ss_pred CccCCEEEEEEcCCCCCHHHHHHHHH
Confidence 48999999999999999999977553
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=93.94 E-value=0.013 Score=55.41 Aligned_cols=25 Identities=36% Similarity=0.449 Sum_probs=21.6
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcC
Q 006897 96 DSEILAVVGPSGTGKSSLLRIISGR 120 (627)
Q Consensus 96 ~Ge~~aIiGpnGsGKSTLl~~L~Gl 120 (627)
.+..+.|.||.|+|||||++.++-.
T Consensus 28 ~~~~i~i~G~~G~GKTsLl~~~~~~ 52 (283)
T d2fnaa2 28 RAPITLVLGLRRTGKSSIIKIGINE 52 (283)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCcHHHHHHHHHHH
Confidence 4678999999999999999988643
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.92 E-value=0.011 Score=52.11 Aligned_cols=21 Identities=43% Similarity=0.582 Sum_probs=19.0
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 006897 100 LAVVGPSGTGKSSLLRIISGR 120 (627)
Q Consensus 100 ~aIiGpnGsGKSTLl~~L~Gl 120 (627)
++++|++|+|||||++.+.+-
T Consensus 6 i~viG~~~vGKTsli~~l~~~ 26 (166)
T d1ctqa_ 6 LVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 789999999999999988764
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=93.91 E-value=0.016 Score=54.21 Aligned_cols=33 Identities=24% Similarity=0.317 Sum_probs=26.7
Q ss_pred eece-EEEEeCCeEEEEECCCCCcHHHHHHHHHc
Q 006897 87 LKSV-SFEARDSEILAVVGPSGTGKSSLLRIISG 119 (627)
Q Consensus 87 L~~v-sl~i~~Ge~~aIiGpnGsGKSTLl~~L~G 119 (627)
||++ ..=+++|+++.|.||+|+|||||+.-++-
T Consensus 15 LD~~l~GGi~~gsl~li~G~pGsGKT~l~~qia~ 48 (242)
T d1tf7a2 15 LDEMCGGGFFKDSIILATGATGTGKTLLVSRFVE 48 (242)
T ss_dssp HHHHTTSSEESSCEEEEEECTTSSHHHHHHHHHH
T ss_pred HHHhhcCCCcCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 5554 23489999999999999999999877753
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=93.90 E-value=0.016 Score=53.82 Aligned_cols=32 Identities=22% Similarity=0.322 Sum_probs=26.4
Q ss_pred eece-EEEEeCCeEEEEECCCCCcHHHHHHHHH
Q 006897 87 LKSV-SFEARDSEILAVVGPSGTGKSSLLRIIS 118 (627)
Q Consensus 87 L~~v-sl~i~~Ge~~aIiGpnGsGKSTLl~~L~ 118 (627)
||++ +.=+++|+++.|.|++|+|||||..-++
T Consensus 23 LD~ll~GGl~~G~l~~i~G~~G~GKT~~~l~~a 55 (258)
T d2i1qa2 23 LDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSC 55 (258)
T ss_dssp HHHHTTSSEETTEEEEEEESTTSSHHHHHHHHH
T ss_pred HHHhcCCCccCCeEEEEEeCCCCCHHHHHHHHH
Confidence 4442 3449999999999999999999987775
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=93.90 E-value=0.011 Score=58.66 Aligned_cols=26 Identities=19% Similarity=0.386 Sum_probs=22.4
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 006897 96 DSEILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 96 ~Ge~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
..-.+||.||.|||||||+..|...+
T Consensus 50 ~~~~igitG~pGaGKSTli~~l~~~~ 75 (323)
T d2qm8a1 50 RAIRVGITGVPGVGKSTTIDALGSLL 75 (323)
T ss_dssp CSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CceEEeeeCCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999997543
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.89 E-value=0.014 Score=54.19 Aligned_cols=27 Identities=19% Similarity=0.409 Sum_probs=24.5
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCCC
Q 006897 96 DSEILAVVGPSGTGKSSLLRIISGRVR 122 (627)
Q Consensus 96 ~Ge~~aIiGpnGsGKSTLl~~L~Gl~~ 122 (627)
+|.+++|=|+-||||||+.+.|+-.+.
T Consensus 2 kGk~I~iEG~DGsGKST~~~~L~~~L~ 28 (214)
T d1tmka_ 2 RGKLILIEGLDRTGKTTQCNILYKKLQ 28 (214)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CeEEEEEECCCCCcHHHHHHHHHHHHH
Confidence 689999999999999999999986654
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=93.83 E-value=0.016 Score=53.46 Aligned_cols=32 Identities=22% Similarity=0.129 Sum_probs=26.0
Q ss_pred eeece-EEEEeCCeEEEEECCCCCcHHHHHHHH
Q 006897 86 ILKSV-SFEARDSEILAVVGPSGTGKSSLLRII 117 (627)
Q Consensus 86 iL~~v-sl~i~~Ge~~aIiGpnGsGKSTLl~~L 117 (627)
-||++ +.-+++|+++.|.|++|+|||||..-+
T Consensus 14 ~LD~~l~GGi~~G~~~~I~G~~G~GKT~la~~~ 46 (242)
T d1tf7a1 14 GFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQF 46 (242)
T ss_dssp THHHHTTSSEETTSEEEEEESTTSSHHHHHHHH
T ss_pred HHHHhhcCCCcCCeEEEEEeCCCCCHHHHHHHH
Confidence 46654 345999999999999999999997544
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=93.77 E-value=0.015 Score=55.79 Aligned_cols=35 Identities=29% Similarity=0.401 Sum_probs=29.1
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHc
Q 006897 85 HILKSVSFEARDSEILAVVGPSGTGKSSLLRIISG 119 (627)
Q Consensus 85 ~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~G 119 (627)
+-|+++..=+.+|+++.|.|++|+|||||+.-++-
T Consensus 23 ~~lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la~ 57 (277)
T d1cr2a_ 23 TGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQAL 57 (277)
T ss_dssp TTHHHHHCSBCTTCEEEEECSTTSSHHHHHHHHHH
T ss_pred hhHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 34666655589999999999999999999887763
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.75 E-value=0.016 Score=54.11 Aligned_cols=27 Identities=22% Similarity=0.208 Sum_probs=24.6
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHH
Q 006897 92 FEARDSEILAVVGPSGTGKSSLLRIIS 118 (627)
Q Consensus 92 l~i~~Ge~~aIiGpnGsGKSTLl~~L~ 118 (627)
.=+++|+++.|.||+|||||||...++
T Consensus 32 GGip~G~~~~i~G~~GsGKT~lalq~~ 58 (258)
T d1v5wa_ 32 GGIESMAITEAFGEFRTGKTQLSHTLC 58 (258)
T ss_dssp SSBCSSEEEEEECCTTCTHHHHHHHHH
T ss_pred CCCcCCEEEEEECCCCCCHHHHHHHHH
Confidence 359999999999999999999988776
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.73 E-value=0.014 Score=51.91 Aligned_cols=20 Identities=40% Similarity=0.689 Sum_probs=18.2
Q ss_pred EEEECCCCCcHHHHHHHHHc
Q 006897 100 LAVVGPSGTGKSSLLRIISG 119 (627)
Q Consensus 100 ~aIiGpnGsGKSTLl~~L~G 119 (627)
++++|++|+|||||++.+.+
T Consensus 7 i~vvG~~~vGKTsLi~~~~~ 26 (175)
T d2f9la1 7 VVLIGDSGVGKSNLLSRFTR 26 (175)
T ss_dssp EEEESSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999998765
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.68 E-value=0.015 Score=51.14 Aligned_cols=20 Identities=35% Similarity=0.559 Sum_probs=17.8
Q ss_pred EEEECCCCCcHHHHHHHHHc
Q 006897 100 LAVVGPSGTGKSSLLRIISG 119 (627)
Q Consensus 100 ~aIiGpnGsGKSTLl~~L~G 119 (627)
++++|++|+|||||++-+.+
T Consensus 5 v~liG~~~vGKSsLi~rl~~ 24 (164)
T d1z2aa1 5 MVVVGNGAVGKSSMIQRYCK 24 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999987764
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=93.65 E-value=0.0079 Score=58.49 Aligned_cols=23 Identities=30% Similarity=0.523 Sum_probs=17.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
++||.|+|||||||+.+.|..++
T Consensus 6 IIgIaG~SGSGKTTva~~l~~i~ 28 (288)
T d1a7ja_ 6 IISVTGSSGAGTSTVKHTFDQIF 28 (288)
T ss_dssp EEEEESCC---CCTHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHH
Confidence 89999999999999999997654
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=93.62 E-value=0.016 Score=54.23 Aligned_cols=23 Identities=35% Similarity=0.751 Sum_probs=20.5
Q ss_pred EEEECCCCCcHHHHHHHHHcCCC
Q 006897 100 LAVVGPSGTGKSSLLRIISGRVR 122 (627)
Q Consensus 100 ~aIiGpnGsGKSTLl~~L~Gl~~ 122 (627)
+.+.||+|+||||+.++|+..+.
T Consensus 38 ~L~~GPpGtGKT~lA~~la~~~~ 60 (238)
T d1in4a2 38 VLLAGPPGLGKTTLAHIIASELQ 60 (238)
T ss_dssp EEEESSTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCcHHHHHHHHHhccC
Confidence 67999999999999999987654
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=93.60 E-value=0.017 Score=53.23 Aligned_cols=20 Identities=35% Similarity=0.617 Sum_probs=18.9
Q ss_pred EEEEECCCCCcHHHHHHHHH
Q 006897 99 ILAVVGPSGTGKSSLLRIIS 118 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~ 118 (627)
++||.|+.||||||..+.+.
T Consensus 5 iIgitG~igSGKStv~~~l~ 24 (208)
T d1vhta_ 5 IVALTGGIGSGKSTVANAFA 24 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEECCCcCCHHHHHHHHH
Confidence 78999999999999999986
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=93.55 E-value=0.021 Score=52.79 Aligned_cols=25 Identities=20% Similarity=0.301 Sum_probs=20.7
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCC
Q 006897 97 SEILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 97 Ge~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
..+++++||+|+||||.+-=|+-.+
T Consensus 10 ~~vi~lvGp~GvGKTTTiaKLA~~~ 34 (207)
T d1ls1a2 10 RNLWFLVGLQGSGKTTTAAKLALYY 34 (207)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4688999999999999887777544
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.54 E-value=0.018 Score=50.80 Aligned_cols=20 Identities=45% Similarity=0.599 Sum_probs=18.2
Q ss_pred EEEECCCCCcHHHHHHHHHc
Q 006897 100 LAVVGPSGTGKSSLLRIISG 119 (627)
Q Consensus 100 ~aIiGpnGsGKSTLl~~L~G 119 (627)
++++|.+|+|||||++-+.+
T Consensus 5 i~viG~~~vGKTsLi~r~~~ 24 (171)
T d2erxa1 5 VAVFGAGGVGKSSLVLRFVK 24 (171)
T ss_dssp EEEECCTTSSHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 68999999999999998775
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.54 E-value=0.016 Score=53.83 Aligned_cols=22 Identities=32% Similarity=0.632 Sum_probs=19.6
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 006897 100 LAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 100 ~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
+.|.||+|+|||||.++++..+
T Consensus 36 lll~Gp~G~GKTtl~~~i~~~l 57 (237)
T d1sxjd2 36 MLFYGPPGTGKTSTILALTKEL 57 (237)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCChHHHHHHHHHHH
Confidence 6799999999999999998653
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=93.53 E-value=0.017 Score=54.09 Aligned_cols=22 Identities=41% Similarity=0.681 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGR 120 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl 120 (627)
++||+|...||||||++.|.+.
T Consensus 7 ~IaIiGh~d~GKSTL~~~L~~~ 28 (227)
T d1g7sa4 7 IVSVLGHVDHGKTTLLDHIRGS 28 (227)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCccHHHHHHHHHhh
Confidence 5999999999999999999764
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=93.49 E-value=0.035 Score=49.78 Aligned_cols=32 Identities=25% Similarity=0.202 Sum_probs=26.6
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHH
Q 006897 86 ILKSVSFEARDSEILAVVGPSGTGKSSLLRIIS 118 (627)
Q Consensus 86 iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~ 118 (627)
.|+.....+ .|.=+.|.|+||+|||||.-.|.
T Consensus 5 ~~H~~~v~~-~g~gvli~G~sG~GKS~lal~l~ 36 (177)
T d1knxa2 5 QIHGVLLEV-FGVGVLLTGRSGIGKSECALDLI 36 (177)
T ss_dssp EEEEEEEEE-TTEEEEEEESSSSSHHHHHHHHH
T ss_pred eEEEEEEEE-CCEEEEEEcCCCCCHHHHHHHHH
Confidence 466666666 78889999999999999987775
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.48 E-value=0.015 Score=51.26 Aligned_cols=21 Identities=33% Similarity=0.374 Sum_probs=18.9
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q 006897 99 ILAVVGPSGTGKSSLLRIISG 119 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~G 119 (627)
.++|+|++|+|||||++.+.+
T Consensus 6 Kv~liG~~~vGKTsLl~~~~~ 26 (167)
T d1xtqa1 6 KIAILGYRSVGKSSLTIQFVE 26 (167)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 488999999999999999764
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.45 E-value=0.019 Score=51.47 Aligned_cols=21 Identities=33% Similarity=0.559 Sum_probs=18.9
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 006897 100 LAVVGPSGTGKSSLLRIISGR 120 (627)
Q Consensus 100 ~aIiGpnGsGKSTLl~~L~Gl 120 (627)
++|+|+.|+|||||++.+.+-
T Consensus 8 i~ivG~~~vGKTsLi~~l~~~ 28 (186)
T d2f7sa1 8 LLALGDSGVGKTTFLYRYTDN 28 (186)
T ss_dssp EEEESCTTSSHHHHHHHHHCS
T ss_pred EEEECCCCcCHHHHHHHHhcC
Confidence 789999999999999998753
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=93.39 E-value=0.023 Score=50.02 Aligned_cols=29 Identities=21% Similarity=0.348 Sum_probs=25.2
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 006897 93 EARDSEILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 93 ~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
..++|.+++|-|+=|||||||.|.++.-+
T Consensus 29 ~~~~g~ii~L~G~LGaGKTtfvr~~~~~l 57 (158)
T d1htwa_ 29 HTEKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp CCSSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred cCCCCeEEEEecCCCccHHHHHHHHHhhc
Confidence 34689999999999999999999997443
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.37 E-value=0.02 Score=50.54 Aligned_cols=22 Identities=41% Similarity=0.709 Sum_probs=19.6
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 006897 100 LAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 100 ~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
++|+|++|+|||||++.+.+..
T Consensus 4 i~lvG~~~vGKTsLi~~~~~~~ 25 (168)
T d2gjsa1 4 VLLLGAPGVGKSALARIFGGVE 25 (168)
T ss_dssp EEEECCTTSSHHHHHHHHHTC-
T ss_pred EEEECCCCcCHHHHHHHHhCCc
Confidence 6899999999999999998764
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=93.34 E-value=0.018 Score=56.68 Aligned_cols=25 Identities=24% Similarity=0.581 Sum_probs=21.2
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCC
Q 006897 97 SEILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 97 Ge~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
+.-+.+.||+|+|||+|.|+|+..+
T Consensus 49 ~~~iLl~GPpG~GKT~lAkalA~~~ 73 (309)
T d1ofha_ 49 PKNILMIGPTGVGKTEIARRLAKLA 73 (309)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHhhcc
Confidence 3455689999999999999999765
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=93.33 E-value=0.017 Score=53.99 Aligned_cols=23 Identities=35% Similarity=0.707 Sum_probs=20.2
Q ss_pred EEEECCCCCcHHHHHHHHHcCCC
Q 006897 100 LAVVGPSGTGKSSLLRIISGRVR 122 (627)
Q Consensus 100 ~aIiGpnGsGKSTLl~~L~Gl~~ 122 (627)
+.+.||+|+|||||.+++++...
T Consensus 38 ~Ll~GPpG~GKTtla~~la~~~~ 60 (239)
T d1ixsb2 38 LLLFGPPGLGKTTLAHVIAHELG 60 (239)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 56999999999999999997653
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.28 E-value=0.016 Score=50.86 Aligned_cols=21 Identities=38% Similarity=0.569 Sum_probs=18.6
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 006897 100 LAVVGPSGTGKSSLLRIISGR 120 (627)
Q Consensus 100 ~aIiGpnGsGKSTLl~~L~Gl 120 (627)
++++|++|+|||||++.+.+-
T Consensus 5 i~vvG~~~vGKTSli~~l~~~ 25 (166)
T d1g16a_ 5 ILLIGDSGVGKSCLLVRFVED 25 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHHC
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 689999999999999987653
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=93.27 E-value=0.015 Score=53.91 Aligned_cols=25 Identities=28% Similarity=0.399 Sum_probs=19.9
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcC
Q 006897 96 DSEILAVVGPSGTGKSSLLRIISGR 120 (627)
Q Consensus 96 ~Ge~~aIiGpnGsGKSTLl~~L~Gl 120 (627)
+..+++++||+|+||||.+-=|+-.
T Consensus 10 ~p~vi~lvGptGvGKTTTiAKLAa~ 34 (213)
T d1vmaa2 10 PPFVIMVVGVNGTGKTTSCGKLAKM 34 (213)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 4458999999999999876666643
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.27 E-value=0.019 Score=50.94 Aligned_cols=21 Identities=33% Similarity=0.646 Sum_probs=18.4
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 006897 100 LAVVGPSGTGKSSLLRIISGR 120 (627)
Q Consensus 100 ~aIiGpnGsGKSTLl~~L~Gl 120 (627)
++++|++|+|||||++-+.+-
T Consensus 6 ivvvG~~~vGKTsli~r~~~~ 26 (173)
T d2a5ja1 6 YIIIGDTGVGKSCLLLQFTDK 26 (173)
T ss_dssp EEEESSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHhcC
Confidence 679999999999999987643
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.17 E-value=0.018 Score=50.96 Aligned_cols=21 Identities=43% Similarity=0.480 Sum_probs=18.5
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q 006897 99 ILAVVGPSGTGKSSLLRIISG 119 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~G 119 (627)
.++|+|.+|+|||||++-+.+
T Consensus 7 Ki~lvG~~~vGKTsLi~r~~~ 27 (171)
T d2erya1 7 RLVVVGGGGVGKSALTIQFIQ 27 (171)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 388999999999999997764
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.13 E-value=0.021 Score=50.24 Aligned_cols=22 Identities=32% Similarity=0.437 Sum_probs=19.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGR 120 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl 120 (627)
.++|+|++|+|||||++-+.+-
T Consensus 5 Ki~lvG~~~vGKTsLi~r~~~~ 26 (167)
T d1kaoa_ 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 3789999999999999988764
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=93.07 E-value=0.038 Score=53.03 Aligned_cols=44 Identities=16% Similarity=0.255 Sum_probs=33.0
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCcc
Q 006897 92 FEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQ 137 (627)
Q Consensus 92 l~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~ 137 (627)
.=++.|.++-|-||+|||||||.-.++......+ ..-++++.+.
T Consensus 52 GGip~g~itei~G~~~sGKT~l~l~~~~~aqk~g--~~v~yiDtE~ 95 (268)
T d1xp8a1 52 GGIPRGRITEIYGPESGGKTTLALAIVAQAQKAG--GTCAFIDAEH 95 (268)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTT--CCEEEEESSC
T ss_pred CCccCceEEEEecCCccchHHHHHHHHHHHHhCC--CEEEEEECCc
Confidence 5789999999999999999999988775433211 1346777665
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.06 E-value=0.018 Score=50.83 Aligned_cols=21 Identities=29% Similarity=0.654 Sum_probs=19.0
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 006897 100 LAVVGPSGTGKSSLLRIISGR 120 (627)
Q Consensus 100 ~aIiGpnGsGKSTLl~~L~Gl 120 (627)
++|+|++|+|||||++.+.+-
T Consensus 8 i~lvG~~~vGKTsLi~~l~~~ 28 (171)
T d2ew1a1 8 IVLIGNAGVGKTCLVRRFTQG 28 (171)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999988753
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.04 E-value=0.025 Score=50.03 Aligned_cols=20 Identities=35% Similarity=0.561 Sum_probs=17.7
Q ss_pred EEEECCCCCcHHHHHHHHHc
Q 006897 100 LAVVGPSGTGKSSLLRIISG 119 (627)
Q Consensus 100 ~aIiGpnGsGKSTLl~~L~G 119 (627)
++++|++|+|||||++-+.+
T Consensus 9 I~vvG~~~vGKSSli~~~~~ 28 (174)
T d1wmsa_ 9 VILLGDGGVGKSSLMNRYVT 28 (174)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 77999999999999977654
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=93.03 E-value=0.021 Score=51.04 Aligned_cols=20 Identities=35% Similarity=0.634 Sum_probs=18.1
Q ss_pred EEEECCCCCcHHHHHHHHHc
Q 006897 100 LAVVGPSGTGKSSLLRIISG 119 (627)
Q Consensus 100 ~aIiGpnGsGKSTLl~~L~G 119 (627)
++++|.+|+|||||++-+.+
T Consensus 5 v~vvG~~~vGKSSLi~~l~~ 24 (184)
T d1vg8a_ 5 VIILGDSGVGKTSLMNQYVN 24 (184)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999998764
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.94 E-value=0.023 Score=49.70 Aligned_cols=20 Identities=30% Similarity=0.476 Sum_probs=18.1
Q ss_pred EEEECCCCCcHHHHHHHHHc
Q 006897 100 LAVVGPSGTGKSSLLRIISG 119 (627)
Q Consensus 100 ~aIiGpnGsGKSTLl~~L~G 119 (627)
++++|..|+|||||++-+.+
T Consensus 5 v~liG~~~vGKTsLl~~~~~ 24 (165)
T d1z06a1 5 IIVIGDSNVGKTCLTYRFCA 24 (165)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 68999999999999998864
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.90 E-value=0.023 Score=49.91 Aligned_cols=21 Identities=33% Similarity=0.631 Sum_probs=18.5
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 006897 100 LAVVGPSGTGKSSLLRIISGR 120 (627)
Q Consensus 100 ~aIiGpnGsGKSTLl~~L~Gl 120 (627)
++|+|.+|+|||||++.+.+-
T Consensus 7 ivlvG~~~vGKTsli~~~~~~ 27 (166)
T d1z0fa1 7 YIIIGDMGVGKSCLLHQFTEK 27 (166)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999887653
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=92.89 E-value=0.026 Score=51.33 Aligned_cols=24 Identities=38% Similarity=0.732 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGRVR 122 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl~~ 122 (627)
+++|-|.-||||||+++.|...+.
T Consensus 2 lI~ieG~dGsGKST~~~~L~~~l~ 25 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 578999999999999999986654
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=92.89 E-value=0.028 Score=53.70 Aligned_cols=26 Identities=38% Similarity=0.625 Sum_probs=21.9
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 006897 96 DSEILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 96 ~Ge~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
+..-+.+.||+|+|||+|.+.|+..+
T Consensus 44 ~~~~iLL~GppGtGKT~la~~iA~~~ 69 (256)
T d1lv7a_ 44 IPKGVLMVGPPGTGKTLLAKAIAGEA 69 (256)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEeeCCCCCCccHHHHHHHHHc
Confidence 34457799999999999999999655
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.85 E-value=0.026 Score=49.95 Aligned_cols=22 Identities=36% Similarity=0.682 Sum_probs=19.9
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 006897 100 LAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 100 ~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
++++|..|+|||||++.+.+..
T Consensus 6 v~lvG~~~vGKTsLi~~~~~~~ 27 (172)
T d2g3ya1 6 VVLIGEQGVGKSTLANIFAGVH 27 (172)
T ss_dssp EEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEECCCCcCHHHHHHHHHhCc
Confidence 6799999999999999998764
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=92.84 E-value=0.015 Score=52.07 Aligned_cols=21 Identities=24% Similarity=0.499 Sum_probs=18.5
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 006897 100 LAVVGPSGTGKSSLLRIISGR 120 (627)
Q Consensus 100 ~aIiGpnGsGKSTLl~~L~Gl 120 (627)
++++|++|+|||||++.+.+-
T Consensus 20 I~lvG~~~vGKTsLi~~l~~~ 40 (182)
T d1moza_ 20 ILILGLDGAGKTTILYRLQIG 40 (182)
T ss_dssp EEEEEETTSSHHHHHHHTCCS
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 679999999999999998643
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=92.82 E-value=0.02 Score=53.06 Aligned_cols=25 Identities=20% Similarity=0.457 Sum_probs=20.1
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCC
Q 006897 97 SEILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 97 Ge~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
-.+++++||+|+||||.+-=|+-.+
T Consensus 9 p~vi~lvGptGvGKTTTiAKLA~~~ 33 (211)
T d2qy9a2 9 PFVILMVGVNGVGKTTTIGKLARQF 33 (211)
T ss_dssp TEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHH
Confidence 3589999999999998776666544
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.81 E-value=0.021 Score=49.92 Aligned_cols=21 Identities=29% Similarity=0.409 Sum_probs=18.8
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 006897 100 LAVVGPSGTGKSSLLRIISGR 120 (627)
Q Consensus 100 ~aIiGpnGsGKSTLl~~L~Gl 120 (627)
++|+|..|+|||||++.+.+-
T Consensus 3 v~vvG~~~vGKTsLi~r~~~~ 23 (164)
T d1yzqa1 3 LVFLGEQSVGKTSLITRFMYD 23 (164)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999988753
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=92.78 E-value=0.023 Score=53.90 Aligned_cols=23 Identities=26% Similarity=0.430 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
-+.|.||+|+|||+|.+.|+...
T Consensus 42 ~vLL~GppGtGKT~la~alA~~~ 64 (246)
T d1d2na_ 42 SVLLEGPPHSGKTALAAKIAEES 64 (246)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHhhcc
Confidence 47799999999999999999653
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=92.74 E-value=0.026 Score=52.20 Aligned_cols=25 Identities=24% Similarity=0.294 Sum_probs=16.3
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcC
Q 006897 96 DSEILAVVGPSGTGKSSLLRIISGR 120 (627)
Q Consensus 96 ~Ge~~aIiGpnGsGKSTLl~~L~Gl 120 (627)
...+++++||+|+||||.+-=|+-.
T Consensus 11 ~p~vi~lvGptGvGKTTTiAKLA~~ 35 (211)
T d1j8yf2 11 IPYVIMLVGVQGTGKATTAGKLAYF 35 (211)
T ss_dssp SSEEEEEECSCCC----HHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 4568999999999999987666643
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.64 E-value=0.027 Score=49.53 Aligned_cols=20 Identities=30% Similarity=0.582 Sum_probs=18.2
Q ss_pred EEEECCCCCcHHHHHHHHHc
Q 006897 100 LAVVGPSGTGKSSLLRIISG 119 (627)
Q Consensus 100 ~aIiGpnGsGKSTLl~~L~G 119 (627)
++|+|.+|+|||||++-+..
T Consensus 7 i~lvG~~~vGKTsli~rl~~ 26 (167)
T d1z0ja1 7 VCLLGDTGVGKSSIMWRFVE 26 (167)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999998864
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.60 E-value=0.026 Score=50.12 Aligned_cols=21 Identities=43% Similarity=0.676 Sum_probs=18.8
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 006897 100 LAVVGPSGTGKSSLLRIISGR 120 (627)
Q Consensus 100 ~aIiGpnGsGKSTLl~~L~Gl 120 (627)
++++|..|+|||||++.+.+-
T Consensus 10 i~vvG~~~vGKTsli~~l~~~ 30 (177)
T d1x3sa1 10 ILIIGESGVGKSSLLLRFTDD 30 (177)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999988753
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.60 E-value=0.03 Score=54.30 Aligned_cols=21 Identities=33% Similarity=0.431 Sum_probs=19.0
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q 006897 99 ILAVVGPSGTGKSSLLRIISG 119 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~G 119 (627)
++||-|+.|||||||.+.|.-
T Consensus 29 iIGi~G~qGSGKSTl~~~l~~ 49 (286)
T d1odfa_ 29 FIFFSGPQGSGKSFTSIQIYN 49 (286)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEeECCCCCCHHHHHHHHHH
Confidence 889999999999999988853
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=92.54 E-value=0.032 Score=52.42 Aligned_cols=27 Identities=30% Similarity=0.394 Sum_probs=23.1
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCC
Q 006897 97 SEILAVVGPSGTGKSSLLRIISGRVRD 123 (627)
Q Consensus 97 Ge~~aIiGpnGsGKSTLl~~L~Gl~~~ 123 (627)
...+.|.||.|+||||+++.|+..++.
T Consensus 43 ~~~lll~GppGtGKT~l~~~l~~~l~~ 69 (276)
T d1fnna2 43 YPRATLLGRPGTGKTVTLRKLWELYKD 69 (276)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHhc
Confidence 347889999999999999999977653
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.47 E-value=0.029 Score=49.29 Aligned_cols=20 Identities=25% Similarity=0.390 Sum_probs=18.0
Q ss_pred EEEECCCCCcHHHHHHHHHc
Q 006897 100 LAVVGPSGTGKSSLLRIISG 119 (627)
Q Consensus 100 ~aIiGpnGsGKSTLl~~L~G 119 (627)
++|+|.+|+|||||++-+.+
T Consensus 6 ivlvG~~~vGKTsLi~r~~~ 25 (167)
T d1z08a1 6 VVLLGEGCVGKTSLVLRYCE 25 (167)
T ss_dssp EEEECCTTSCHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 68999999999999998764
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.46 E-value=0.025 Score=50.24 Aligned_cols=22 Identities=36% Similarity=0.499 Sum_probs=18.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGR 120 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl 120 (627)
.+.|+|++|+|||||++.+.+-
T Consensus 4 KivvvG~~~vGKTsLi~~~~~~ 25 (177)
T d1kmqa_ 4 KLVIVGDGACGKTCLLIVNSKD 25 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 3679999999999999888754
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.42 E-value=0.025 Score=51.18 Aligned_cols=21 Identities=48% Similarity=0.646 Sum_probs=18.7
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 006897 100 LAVVGPSGTGKSSLLRIISGR 120 (627)
Q Consensus 100 ~aIiGpnGsGKSTLl~~L~Gl 120 (627)
++|+|+.|+|||||++.+.+-
T Consensus 9 ivvvG~~~vGKTsli~~l~~~ 29 (194)
T d2bcgy1 9 LLLIGNSGVGKSCLLLRFSDD 29 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHHC
T ss_pred EEEECCCCcCHHHHHHHHhhC
Confidence 789999999999999987643
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.33 E-value=0.031 Score=51.68 Aligned_cols=22 Identities=18% Similarity=0.477 Sum_probs=19.2
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 006897 100 LAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 100 ~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
+.+.||+|+||||+.++++..+
T Consensus 39 ~ll~Gp~G~GKTt~a~~la~~l 60 (224)
T d1sxjb2 39 MIISGMPGIGKTTSVHCLAHEL 60 (224)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCchhhHHHHHHHH
Confidence 5789999999999999998544
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.21 E-value=0.032 Score=49.10 Aligned_cols=21 Identities=29% Similarity=0.444 Sum_probs=18.2
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q 006897 99 ILAVVGPSGTGKSSLLRIISG 119 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~G 119 (627)
.++++|..|+|||||++-+.+
T Consensus 5 Ki~vvG~~~vGKTsLi~~~~~ 25 (170)
T d1ek0a_ 5 KLVLLGEAAVGKSSIVLRFVS 25 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 368999999999999997654
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=92.17 E-value=0.021 Score=50.50 Aligned_cols=22 Identities=18% Similarity=0.330 Sum_probs=19.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGR 120 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl 120 (627)
-+.++|++|+|||||++.+.+-
T Consensus 14 kIvlvG~~~vGKTSli~rl~~~ 35 (173)
T d1e0sa_ 14 RILMLGLDAAGKTTILYKLKLG 35 (173)
T ss_dssp EEEEEEETTSSHHHHHHHTTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3669999999999999998753
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.17 E-value=0.033 Score=49.02 Aligned_cols=21 Identities=38% Similarity=0.604 Sum_probs=18.8
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 006897 100 LAVVGPSGTGKSSLLRIISGR 120 (627)
Q Consensus 100 ~aIiGpnGsGKSTLl~~L~Gl 120 (627)
++++|++|+|||||++-+.+-
T Consensus 5 i~lvG~~~vGKTsli~r~~~~ 25 (168)
T d2atva1 5 LAIFGRAGVGKSALVVRFLTK 25 (168)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 689999999999999998753
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=92.14 E-value=0.032 Score=52.95 Aligned_cols=22 Identities=41% Similarity=0.850 Sum_probs=20.0
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 006897 100 LAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 100 ~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
+.+.||+|+|||+|.+.|+...
T Consensus 45 iLl~GppGtGKT~la~aia~~~ 66 (247)
T d1ixza_ 45 VLLVGPPGVGKTHLARAVAGEA 66 (247)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEecCCCCChhHHHHHHHHHc
Confidence 6899999999999999999754
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.10 E-value=0.029 Score=49.54 Aligned_cols=20 Identities=45% Similarity=0.674 Sum_probs=18.3
Q ss_pred EEEECCCCCcHHHHHHHHHc
Q 006897 100 LAVVGPSGTGKSSLLRIISG 119 (627)
Q Consensus 100 ~aIiGpnGsGKSTLl~~L~G 119 (627)
++++|..|+|||||++-+.+
T Consensus 8 I~lvG~~~vGKTsll~~~~~ 27 (174)
T d2bmea1 8 FLVIGNAGTGKSCLLHQFIE 27 (174)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999998764
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.09 E-value=0.033 Score=49.72 Aligned_cols=22 Identities=32% Similarity=0.385 Sum_probs=19.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGR 120 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl 120 (627)
.++|+|.+|+|||||++-+.+-
T Consensus 7 KivviG~~~vGKTsli~~~~~~ 28 (183)
T d1mh1a_ 7 KCVVVGDGAVGKTCLLISYTTN 28 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4889999999999999887653
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.06 E-value=0.03 Score=49.53 Aligned_cols=21 Identities=43% Similarity=0.485 Sum_probs=18.4
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q 006897 99 ILAVVGPSGTGKSSLLRIISG 119 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~G 119 (627)
.++|+|..|+|||||++-+.+
T Consensus 8 Kv~lvG~~~vGKTsLi~r~~~ 28 (173)
T d2fn4a1 8 KLVVVGGGGVGKSALTIQFIQ 28 (173)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 377999999999999998764
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.96 E-value=0.035 Score=48.83 Aligned_cols=21 Identities=38% Similarity=0.457 Sum_probs=18.6
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q 006897 99 ILAVVGPSGTGKSSLLRIISG 119 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~G 119 (627)
.++++|..|+|||||++-+.+
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~ 28 (170)
T d1r2qa_ 8 KLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 368999999999999998874
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.95 E-value=0.024 Score=50.23 Aligned_cols=20 Identities=40% Similarity=0.607 Sum_probs=8.5
Q ss_pred EEEECCCCCcHHHHHHHHHc
Q 006897 100 LAVVGPSGTGKSSLLRIISG 119 (627)
Q Consensus 100 ~aIiGpnGsGKSTLl~~L~G 119 (627)
++|+|..|+|||||++.+.+
T Consensus 9 i~vvG~~~vGKTsLi~~l~~ 28 (173)
T d2fu5c1 9 LLLIGDSGVGKTCVLFRFSE 28 (173)
T ss_dssp EEEECCCCC-----------
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999987765
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.95 E-value=0.032 Score=53.45 Aligned_cols=27 Identities=30% Similarity=0.471 Sum_probs=22.7
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 006897 95 RDSEILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 95 ~~Ge~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
.+..-+.|.||+|+|||+|.+.+++.+
T Consensus 39 ~~~~giLL~Gp~GtGKT~l~~ala~~~ 65 (265)
T d1r7ra3 39 TPSKGVLFYGPPGCGKTLLAKAIANEC 65 (265)
T ss_dssp CCCCEEEEBCCTTSSHHHHHHHHHHHT
T ss_pred CCCCeEEEECCCCCcchhHHHHHHHHh
Confidence 344457799999999999999999765
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.92 E-value=0.023 Score=50.24 Aligned_cols=20 Identities=35% Similarity=0.604 Sum_probs=17.5
Q ss_pred EEEECCCCCcHHHHHHHHHc
Q 006897 100 LAVVGPSGTGKSSLLRIISG 119 (627)
Q Consensus 100 ~aIiGpnGsGKSTLl~~L~G 119 (627)
++++|++|+|||||++.+.+
T Consensus 6 i~vvG~~~vGKTsli~~~~~ 25 (170)
T d1i2ma_ 6 LVLVGDGGTGKTTFVKRHLT 25 (170)
T ss_dssp EEEEECTTSSHHHHHHTTC-
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999998754
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=91.88 E-value=0.072 Score=47.59 Aligned_cols=32 Identities=22% Similarity=0.169 Sum_probs=24.3
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHH
Q 006897 86 ILKSVSFEARDSEILAVVGPSGTGKSSLLRIIS 118 (627)
Q Consensus 86 iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~ 118 (627)
.|+..-. .-.|.=+.|.|+||+|||||.-.|.
T Consensus 4 ~lH~~~v-~~~g~gvl~~G~sG~GKStlal~l~ 35 (176)
T d1kkma_ 4 SMHGVLV-DIYGLGVLITGDSGVGKSETALELV 35 (176)
T ss_dssp EEEEEEE-EETTEEEEEECCTTSCHHHHHHHHH
T ss_pred eEEEEEE-EECCEEEEEEeCCCCCHHHHHHHHH
Confidence 4554444 3457789999999999999987765
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.85 E-value=0.038 Score=48.72 Aligned_cols=20 Identities=45% Similarity=0.542 Sum_probs=17.9
Q ss_pred EEEECCCCCcHHHHHHHHHc
Q 006897 100 LAVVGPSGTGKSSLLRIISG 119 (627)
Q Consensus 100 ~aIiGpnGsGKSTLl~~L~G 119 (627)
++++|..|+|||||++-+.+
T Consensus 7 i~lvG~~~vGKTsll~~~~~ 26 (169)
T d1x1ra1 7 LVVVGDGGVGKSALTIQFFQ 26 (169)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 67999999999999998765
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=91.85 E-value=0.036 Score=53.59 Aligned_cols=34 Identities=24% Similarity=0.289 Sum_probs=28.3
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcC
Q 006897 86 ILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGR 120 (627)
Q Consensus 86 iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl 120 (627)
++|-+ +.|-+|+..+|+|++|+|||||+..|+.-
T Consensus 33 ~ID~l-~PigrGQr~~I~g~~g~GKT~l~~~i~~~ 66 (289)
T d1xpua3 33 VLDLA-SPIGRGQRGLIVAPPKAGKTMLLQNIAQS 66 (289)
T ss_dssp HHHHH-SCCBTTCEEEEEECSSSSHHHHHHHHHHH
T ss_pred eeeec-ccccCCCeeeEeCCCCCCHHHHHHHHHHH
Confidence 44333 57889999999999999999999999753
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=91.67 E-value=0.032 Score=53.59 Aligned_cols=45 Identities=9% Similarity=0.201 Sum_probs=31.4
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCccC
Q 006897 92 FEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQI 138 (627)
Q Consensus 92 l~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~~ 138 (627)
.-++.|.++-|.||+|+|||||+-.++......+ .--|+++.+.-
T Consensus 55 gG~~~g~i~e~~G~~~~GKT~l~l~~~~~~q~~g--~~~vyIDtE~~ 99 (269)
T d1mo6a1 55 GGLPRGRVIEIYGPESSGKTTVALHAVANAQAAG--GVAAFIDAEHA 99 (269)
T ss_dssp SSBCSSSEEEEECSSSSSHHHHHHHHHHHHHHTT--CEEEEEESSCC
T ss_pred CCcccceeEEEecCCCcHHHHHHHHHHHHHhcCC--CEEEEEECCcc
Confidence 4689999999999999999999755543222111 13467777663
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.64 E-value=0.037 Score=51.77 Aligned_cols=21 Identities=33% Similarity=0.518 Sum_probs=19.0
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 006897 100 LAVVGPSGTGKSSLLRIISGR 120 (627)
Q Consensus 100 ~aIiGpnGsGKSTLl~~L~Gl 120 (627)
+.|.||+|+||||+.+.++-.
T Consensus 36 lll~Gp~G~GKTt~~~~la~~ 56 (252)
T d1sxje2 36 LLLYGPNGTGKKTRCMALLES 56 (252)
T ss_dssp EEEECSTTSSHHHHHHTHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 679999999999999999854
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.60 E-value=0.041 Score=48.39 Aligned_cols=20 Identities=40% Similarity=0.620 Sum_probs=17.8
Q ss_pred EEEECCCCCcHHHHHHHHHc
Q 006897 100 LAVVGPSGTGKSSLLRIISG 119 (627)
Q Consensus 100 ~aIiGpnGsGKSTLl~~L~G 119 (627)
++|+|+.|+|||||++-+.+
T Consensus 9 i~vvG~~~vGKTsli~~~~~ 28 (170)
T d2g6ba1 9 VMLVGDSGVGKTCLLVRFKD 28 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 89999999999999997643
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.60 E-value=0.042 Score=50.74 Aligned_cols=22 Identities=36% Similarity=0.668 Sum_probs=19.5
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 006897 100 LAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 100 ~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
+.+.||.|+||||+.++|+..+
T Consensus 38 lLl~Gp~G~GKttl~~~la~~l 59 (227)
T d1sxjc2 38 LLFYGPPGTGKTSTIVALAREI 59 (227)
T ss_dssp EEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCChhHHHHHHHHHh
Confidence 6799999999999999998643
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.49 E-value=0.037 Score=53.39 Aligned_cols=34 Identities=32% Similarity=0.512 Sum_probs=26.7
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 006897 85 HILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 85 ~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
.+|+.++- |=-+++|+||-++|||||||.|.|..
T Consensus 23 ~~l~~~~~---~v~vvsi~G~~~sGKS~llN~l~~~~ 56 (277)
T d1f5na2 23 KILSAITQ---PMVVVAIVGLYRTGKSYLMNKLAGKK 56 (277)
T ss_dssp HHHHTCCS---BEEEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred HHHHcCCC---CEEEEEEECCCCCCHHHHHHHHcCCC
Confidence 35555543 23589999999999999999999865
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.44 E-value=0.042 Score=52.33 Aligned_cols=22 Identities=32% Similarity=0.693 Sum_probs=19.9
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 006897 100 LAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 100 ~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
+.|.||+|+|||+|.+.++...
T Consensus 41 iLL~GppGtGKT~l~~ala~~~ 62 (258)
T d1e32a2 41 ILLYGPPGTGKTLIARAVANET 62 (258)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT
T ss_pred eEEecCCCCCchHHHHHHHHHh
Confidence 7799999999999999999754
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=91.41 E-value=0.044 Score=48.20 Aligned_cols=21 Identities=33% Similarity=0.401 Sum_probs=18.4
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q 006897 99 ILAVVGPSGTGKSSLLRIISG 119 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~G 119 (627)
.++|+|..|+|||||++-+.+
T Consensus 6 KivlvG~~~vGKTsli~~~~~ 26 (168)
T d1u8za_ 6 KVIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999998754
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.36 E-value=0.045 Score=48.70 Aligned_cols=22 Identities=36% Similarity=0.468 Sum_probs=18.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGR 120 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl 120 (627)
.++++|++|+|||||++-+.+-
T Consensus 7 ki~vlG~~~vGKTsLi~~~~~~ 28 (175)
T d2bmja1 7 RLGVLGDARSGKSSLIHRFLTG 28 (175)
T ss_dssp EEEEECCTTTTHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999977653
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.36 E-value=0.045 Score=49.09 Aligned_cols=20 Identities=25% Similarity=0.562 Sum_probs=17.9
Q ss_pred EEEEECCCCCcHHHHHHHHH
Q 006897 99 ILAVVGPSGTGKSSLLRIIS 118 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~ 118 (627)
.+.|+|.+|+|||||++-+.
T Consensus 4 KivllG~~~vGKTsll~r~~ 23 (200)
T d1zcba2 4 KILLLGAGESGKSTFLKQMR 23 (200)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 36799999999999999984
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=91.22 E-value=0.058 Score=48.73 Aligned_cols=22 Identities=27% Similarity=0.551 Sum_probs=20.3
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 006897 100 LAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 100 ~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
+||+|.-.+|||||++.|+|..
T Consensus 8 IaiiGhvd~GKSTL~~~L~g~~ 29 (195)
T d1kk1a3 8 IGMVGHVDHGKTTLTKALTGVW 29 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEeccCCcHHHHHHHHHhhh
Confidence 7999999999999999999864
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=91.11 E-value=0.036 Score=52.36 Aligned_cols=23 Identities=35% Similarity=0.609 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
++.|.||.|+||||+++.++..+
T Consensus 48 ~l~l~GppGtGKT~l~~~l~~~l 70 (287)
T d1w5sa2 48 IYGSIGRVGIGKTTLAKFTVKRV 70 (287)
T ss_dssp EEECTTCCSSSHHHHHHHHHHHH
T ss_pred EEEeECCCCCCHHHHHHHHHHHH
Confidence 45667999999999999998654
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.05 E-value=0.05 Score=47.61 Aligned_cols=21 Identities=38% Similarity=0.528 Sum_probs=18.4
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 006897 100 LAVVGPSGTGKSSLLRIISGR 120 (627)
Q Consensus 100 ~aIiGpnGsGKSTLl~~L~Gl 120 (627)
++++|.+|+|||||++-+.+-
T Consensus 6 ivvvG~~~vGKTsli~r~~~~ 26 (167)
T d1c1ya_ 6 LVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEECSTTSSHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 689999999999999987643
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.97 E-value=0.05 Score=48.68 Aligned_cols=20 Identities=35% Similarity=0.483 Sum_probs=18.1
Q ss_pred EEEECCCCCcHHHHHHHHHc
Q 006897 100 LAVVGPSGTGKSSLLRIISG 119 (627)
Q Consensus 100 ~aIiGpnGsGKSTLl~~L~G 119 (627)
++|+|.+|+|||||++.+..
T Consensus 12 i~lvG~~~vGKTsLi~r~~~ 31 (185)
T d2atxa1 12 CVVVGDGAVGKTCLLMSYAN 31 (185)
T ss_dssp EEEEECTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhh
Confidence 88999999999999988764
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=90.88 E-value=0.06 Score=54.74 Aligned_cols=28 Identities=36% Similarity=0.528 Sum_probs=24.2
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCC
Q 006897 95 RDSEILAVVGPSGTGKSSLLRIISGRVR 122 (627)
Q Consensus 95 ~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~ 122 (627)
.++-++.|.||.||||||+|..+...+.
T Consensus 156 ~~~GliLvtGpTGSGKSTTl~~~l~~~~ 183 (401)
T d1p9ra_ 156 RPHGIILVTGPTGSGKSTTLYAGLQELN 183 (401)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred hhhceEEEEcCCCCCccHHHHHHhhhhc
Confidence 4566999999999999999999987654
|
| >d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ATPase subunit of magnesium chelatase, BchI species: Rhodobacter capsulatus [TaxId: 1061]
Probab=90.86 E-value=0.026 Score=55.77 Aligned_cols=26 Identities=31% Similarity=0.480 Sum_probs=23.2
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCCCC
Q 006897 98 EILAVVGPSGTGKSSLLRIISGRVRD 123 (627)
Q Consensus 98 e~~aIiGpnGsGKSTLl~~L~Gl~~~ 123 (627)
.-+.|+||.|+|||||+|.+++++++
T Consensus 29 h~vLl~G~pG~GKT~lar~~~~iLp~ 54 (333)
T d1g8pa_ 29 GGVLVFGDRGTGKSTAVRALAALLPE 54 (333)
T ss_dssp CCEEEECCGGGCTTHHHHHHHHHSCC
T ss_pred CeEEEECCCCccHHHHHHHHHHhCCC
Confidence 34789999999999999999998865
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=90.81 E-value=0.043 Score=56.60 Aligned_cols=24 Identities=25% Similarity=0.587 Sum_probs=21.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGRVR 122 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl~~ 122 (627)
=+.++||+|+|||-|.|.||+.+.
T Consensus 51 NILliGPTGvGKTlLAr~LAk~l~ 74 (443)
T d1g41a_ 51 NILMIGPTGVGKTEIARRLAKLAN 74 (443)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHTT
T ss_pred cEEEECCCCCCHHHHHHHHHHHhC
Confidence 367999999999999999999774
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=90.69 E-value=0.056 Score=49.98 Aligned_cols=20 Identities=25% Similarity=0.554 Sum_probs=17.7
Q ss_pred EEEEECCCCCcHHHHHHHHH
Q 006897 99 ILAVVGPSGTGKSSLLRIIS 118 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~ 118 (627)
.+.|+|.+|+|||||++-+.
T Consensus 8 KilllG~~~vGKTsll~~~~ 27 (221)
T d1azta2 8 RLLLLGAGESGKSTIVKQMR 27 (221)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 46899999999999999874
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=90.65 E-value=0.099 Score=46.34 Aligned_cols=32 Identities=25% Similarity=0.180 Sum_probs=24.3
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHH
Q 006897 86 ILKSVSFEARDSEILAVVGPSGTGKSSLLRIIS 118 (627)
Q Consensus 86 iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~ 118 (627)
-|+..-. .-.|.=+.|.|+||+|||||.-.+.
T Consensus 5 ~~H~~~v-~~~g~gvli~G~sg~GKS~la~~l~ 36 (169)
T d1ko7a2 5 SLHGVLV-DVYGVGVLITGDSGIGKSETALELI 36 (169)
T ss_dssp EEESEEE-EETTEEEEEEESTTSSHHHHHHHHH
T ss_pred eEEEEEE-EECCEEEEEEeCCCCCHHHHHHHHH
Confidence 3555333 4567889999999999999886664
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.30 E-value=0.061 Score=47.86 Aligned_cols=20 Identities=40% Similarity=0.690 Sum_probs=17.2
Q ss_pred EEEECCCCCcHHHHHHHHHc
Q 006897 100 LAVVGPSGTGKSSLLRIISG 119 (627)
Q Consensus 100 ~aIiGpnGsGKSTLl~~L~G 119 (627)
++++|.+|+|||||++-+..
T Consensus 5 ivliG~~~vGKTsli~r~~~ 24 (179)
T d1m7ba_ 5 IVVVGDSQCGKTALLHVFAK 24 (179)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 67999999999999986643
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.30 E-value=0.056 Score=48.54 Aligned_cols=21 Identities=33% Similarity=0.436 Sum_probs=18.1
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 006897 100 LAVVGPSGTGKSSLLRIISGR 120 (627)
Q Consensus 100 ~aIiGpnGsGKSTLl~~L~Gl 120 (627)
++++|++|+|||||++-+.+-
T Consensus 6 vvllG~~~vGKTSli~r~~~~ 26 (191)
T d2ngra_ 6 CVVVGDGAVGKTCLLISYTTN 26 (191)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999877543
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=90.17 E-value=0.059 Score=52.08 Aligned_cols=23 Identities=48% Similarity=0.614 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
.++++|.-.||||||+|.|+|.-
T Consensus 28 ~ivvvG~~SsGKSsliNaLlg~~ 50 (299)
T d2akab1 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Confidence 37899999999999999999975
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=90.16 E-value=0.079 Score=49.28 Aligned_cols=22 Identities=18% Similarity=0.360 Sum_probs=19.9
Q ss_pred eEEEEECCCCCcHHHHHHHHHc
Q 006897 98 EILAVVGPSGTGKSSLLRIISG 119 (627)
Q Consensus 98 e~~aIiGpnGsGKSTLl~~L~G 119 (627)
.++||.|+-||||||..+.|..
T Consensus 2 ~iIgiTG~igSGKsTva~~l~e 23 (241)
T d1deka_ 2 KLIFLSGVKRSGKDTTADFIMS 23 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 3789999999999999999963
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=90.11 E-value=0.064 Score=52.09 Aligned_cols=23 Identities=48% Similarity=0.666 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
.++++|.-+||||||++.|.|.-
T Consensus 26 ~ivVvG~~ssGKSSliNaLlG~~ 48 (306)
T d1jwyb_ 26 QIVVVGSQSSGKSSVLENIVGRD 48 (306)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEeCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999975
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=89.79 E-value=0.069 Score=52.20 Aligned_cols=22 Identities=27% Similarity=0.377 Sum_probs=19.4
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 006897 100 LAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 100 ~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
+||+|-.-+|||||+|.|+|--
T Consensus 3 v~lvG~pn~GKStlfn~lt~~~ 24 (319)
T d1wxqa1 3 IGVVGKPNVGKSTFFSAATLVD 24 (319)
T ss_dssp EEEEECTTSSHHHHHHHHHC--
T ss_pred EeEECCCCCCHHHHHHHHHCCC
Confidence 7999999999999999999864
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=89.77 E-value=0.087 Score=51.61 Aligned_cols=37 Identities=16% Similarity=0.283 Sum_probs=26.9
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCcc
Q 006897 96 DSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQ 137 (627)
Q Consensus 96 ~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~ 137 (627)
|...+.++||+|+|||.|.+.|+-.+.. --+.++.-.
T Consensus 51 p~~~~lf~Gp~GvGKT~lak~la~~l~~-----~~i~~d~s~ 87 (315)
T d1r6bx3 51 PVGSFLFAGPTGVGKTEVTVQLSKALGI-----ELLRFDMSE 87 (315)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHHTC-----EEEEEEGGG
T ss_pred CceEEEEECCCcchhHHHHHHHHhhccC-----CeeEecccc
Confidence 3446789999999999999999976531 345555433
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.11 E-value=0.094 Score=48.62 Aligned_cols=25 Identities=20% Similarity=0.434 Sum_probs=21.7
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCCC
Q 006897 98 EILAVVGPSGTGKSSLLRIISGRVR 122 (627)
Q Consensus 98 e~~aIiGpnGsGKSTLl~~L~Gl~~ 122 (627)
.+++|=|+-||||||+++.|+-.+.
T Consensus 3 k~IviEG~~GsGKST~~~~L~~~l~ 27 (241)
T d2ocpa1 3 RRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHh
Confidence 4789999999999999999986543
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=88.77 E-value=0.081 Score=51.27 Aligned_cols=22 Identities=32% Similarity=0.519 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGR 120 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl 120 (627)
-+||+|...+|||||+++|++-
T Consensus 12 kiGivG~Pn~GKSTlfnalT~~ 33 (296)
T d1ni3a1 12 KTGIVGMPNVGKSTFFRAITKS 33 (296)
T ss_dssp EEEEEECSSSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 3899999999999999999975
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=88.41 E-value=0.097 Score=50.00 Aligned_cols=20 Identities=35% Similarity=0.655 Sum_probs=18.1
Q ss_pred EEEEECCCCCcHHHHHHHHH
Q 006897 99 ILAVVGPSGTGKSSLLRIIS 118 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~ 118 (627)
-+||+|+.|+|||||...|.
T Consensus 4 Nv~iiGh~~~GKTtL~e~ll 23 (267)
T d2dy1a2 4 TVALVGHAGSGKTTLTEALL 23 (267)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEEcCCCCcHHHHHHHHH
Confidence 37999999999999999993
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=88.36 E-value=0.11 Score=47.53 Aligned_cols=20 Identities=20% Similarity=0.403 Sum_probs=18.3
Q ss_pred EEEECCCCCcHHHHHHHHHc
Q 006897 100 LAVVGPSGTGKSSLLRIISG 119 (627)
Q Consensus 100 ~aIiGpnGsGKSTLl~~L~G 119 (627)
+||+|.-++|||||++.|.+
T Consensus 6 i~iiGhvd~GKSTL~~~Ll~ 25 (204)
T d2c78a3 6 VGTIGHVDHGKTTLTAALTY 25 (204)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEEeCCCCcHHHHHHHHHH
Confidence 79999999999999999953
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=88.27 E-value=0.11 Score=45.88 Aligned_cols=24 Identities=21% Similarity=0.378 Sum_probs=19.6
Q ss_pred EEEECCCCCcHHHHHHHHHcCCCC
Q 006897 100 LAVVGPSGTGKSSLLRIISGRVRD 123 (627)
Q Consensus 100 ~aIiGpnGsGKSTLl~~L~Gl~~~ 123 (627)
+.|+|..|+|||||++-+..-.-|
T Consensus 5 ivllG~~~vGKTsl~~r~~~~~~~ 28 (195)
T d1svsa1 5 LLLLGAGESGKSTIVKQMKIIHEA 28 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHhhCCCC
Confidence 689999999999999988644333
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=87.86 E-value=0.11 Score=51.96 Aligned_cols=30 Identities=17% Similarity=0.234 Sum_probs=26.5
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHHcCCC
Q 006897 93 EARDSEILAVVGPSGTGKSSLLRIISGRVR 122 (627)
Q Consensus 93 ~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~ 122 (627)
.++++..+.+.||.|+||||+.+.|++.+.
T Consensus 150 ~~~~~~~~~~~g~~~~gk~~~~~~~~~~~~ 179 (362)
T d1svma_ 150 NIPKKRYWLFKGPIDSGKTTLAAALLELCG 179 (362)
T ss_dssp CCTTCCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCCCcCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 347888999999999999999999998763
|
| >d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of beta subunit of F1 ATP synthase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=87.86 E-value=0.15 Score=48.74 Aligned_cols=28 Identities=18% Similarity=0.292 Sum_probs=25.2
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHHc
Q 006897 92 FEARDSEILAVVGPSGTGKSSLLRIISG 119 (627)
Q Consensus 92 l~i~~Ge~~aIiGpnGsGKSTLl~~L~G 119 (627)
+.+-+|+..+|+|++|+|||||+..++-
T Consensus 63 ~pigkGQr~~If~~~g~GKt~l~~~i~~ 90 (276)
T d2jdid3 63 APYAKGGKIGLFGGAGVGKTVLIMELIN 90 (276)
T ss_dssp SCEETTCEEEEEECTTSSHHHHHHHHHH
T ss_pred ccccCCCEEEeeCCCCCCHHHHHHHHHH
Confidence 6789999999999999999999877753
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=87.75 E-value=0.12 Score=45.97 Aligned_cols=21 Identities=24% Similarity=0.456 Sum_probs=18.3
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 006897 100 LAVVGPSGTGKSSLLRIISGR 120 (627)
Q Consensus 100 ~aIiGpnGsGKSTLl~~L~Gl 120 (627)
+.++|..|+|||||++-+..-
T Consensus 5 iv~lG~~~vGKTsll~r~~~~ 25 (200)
T d2bcjq2 5 LLLLGTGESGKSTFIKQMRII 25 (200)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 679999999999999998543
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=87.75 E-value=0.15 Score=46.21 Aligned_cols=24 Identities=33% Similarity=0.526 Sum_probs=21.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGRVR 122 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl~~ 122 (627)
-+||+|.=.+|||||++.|.|...
T Consensus 10 ni~iiGhVd~GKSTL~~~L~~~~~ 33 (205)
T d2qn6a3 10 NIGVVGHVDHGKTTLVQAITGIWT 33 (205)
T ss_dssp EEEEECSTTSSHHHHHHHHHSCCC
T ss_pred EEEEEEccCCcHHHHHHHHHhhhc
Confidence 379999999999999999998654
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=87.30 E-value=0.13 Score=49.40 Aligned_cols=24 Identities=21% Similarity=0.473 Sum_probs=20.5
Q ss_pred EEEECCCCCcHHHHHHHH---HcCCCC
Q 006897 100 LAVVGPSGTGKSSLLRII---SGRVRD 123 (627)
Q Consensus 100 ~aIiGpnGsGKSTLl~~L---~Gl~~~ 123 (627)
+||+|+.|||||||...| +|.+..
T Consensus 9 i~i~gh~~~GKTtL~e~ll~~~g~~~~ 35 (276)
T d2bv3a2 9 IGIAAHIDAGKTTTTERILYYTGRIHK 35 (276)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHTSSCC
T ss_pred EEEEeCCCCCHHHHHHHHHHhcCcccc
Confidence 699999999999999998 566543
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=87.21 E-value=0.21 Score=47.76 Aligned_cols=27 Identities=37% Similarity=0.662 Sum_probs=22.4
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHHc
Q 006897 92 FEARDSEILAVVGPSGTGKSSLLRIISG 119 (627)
Q Consensus 92 l~i~~Ge~~aIiGpnGsGKSTLl~~L~G 119 (627)
+.+.++ +++|+|||||||||+|++|.-
T Consensus 20 i~f~~~-lnvlvG~NgsGKS~iL~Ai~~ 46 (308)
T d1e69a_ 20 IGFSDR-VTAIVGPNGSGKSNIIDAIKW 46 (308)
T ss_dssp EECCSS-EEEEECCTTTCSTHHHHHHHH
T ss_pred EeCCCC-eEEEECCCCCcHHHHHHHHHH
Confidence 444454 999999999999999999843
|
| >d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Hypothetical protein YjiA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=87.11 E-value=0.11 Score=48.11 Aligned_cols=22 Identities=36% Similarity=0.551 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGR 120 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl 120 (627)
++.|.|.=||||||||+-+...
T Consensus 5 v~iitGFLGaGKTTll~~lL~~ 26 (222)
T d1nija1 5 VTLLTGFLGAGKTTLLRHILNE 26 (222)
T ss_dssp EEEEEESSSSSCHHHHHHHHHS
T ss_pred EEEEeeCCCCCHHHHHHHHHhc
Confidence 6789999999999999998753
|
| >d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: NTPase P4 species: Bacteriophage phi-12 [TaxId: 161736]
Probab=87.06 E-value=0.21 Score=48.88 Aligned_cols=35 Identities=14% Similarity=0.305 Sum_probs=26.8
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 006897 86 ILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 86 iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
+.+-+-...++| ++.+.||+|+|||.|.+.|++.+
T Consensus 113 ~~~~~~~~~~~g-~~l~~G~pG~GKT~la~ala~~~ 147 (321)
T d1w44a_ 113 VAEFGGHRYASG-MVIVTGKGNSGKTPLVHALGEAL 147 (321)
T ss_dssp EEEETTEEEESE-EEEEECSSSSCHHHHHHHHHHHH
T ss_pred HHHHhhcccCCc-eEEEECCCCccHHHHHHHHHHHh
Confidence 344444566666 66678999999999999999765
|
| >d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CED-4, NB-ARC domain species: Caenorhabditis elegans [TaxId: 6239]
Probab=86.57 E-value=0.19 Score=47.99 Aligned_cols=23 Identities=30% Similarity=0.345 Sum_probs=20.5
Q ss_pred CeEEEEECCCCCcHHHHHHHHHc
Q 006897 97 SEILAVVGPSGTGKSSLLRIISG 119 (627)
Q Consensus 97 Ge~~aIiGpnGsGKSTLl~~L~G 119 (627)
..+++|.|.-|.|||||.+.+..
T Consensus 44 ~~~v~I~GmgGiGKTtLA~~v~~ 66 (277)
T d2a5yb3 44 SFFLFLHGRAGSGKSVIASQALS 66 (277)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999998853
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=86.49 E-value=0.17 Score=46.49 Aligned_cols=74 Identities=9% Similarity=0.331 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHHHHcCCCEEEEEccCccHHH----HHHhhhheeecCCeEEeeCCHHH-----HHHHHHhcCCCCCCC
Q 006897 217 STSALQVIELLASMAKAKQRTVVLSIHQPSYRI----LQYISKFLILSRGSVVHYGSLEL-----LEETINNLGYQIPTQ 287 (627)
Q Consensus 217 ~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i----~~~~D~i~vL~~G~iv~~G~~~~-----~~~~~~~~g~~~p~~ 287 (627)
+..+..+.+++..+.+ .|+.+|+++..+..++ .++..| |..|-++.-.++++ +.....+.|+.++.
T Consensus 113 ~~~~~~lf~lin~~~~-~~~~iiits~~~p~~l~~~~~dL~SR---L~~g~~~~i~p~d~~~~~iL~~~a~~rgl~l~~- 187 (213)
T d1l8qa2 113 ERTQIEFFHIFNTLYL-LEKQIILASDRHPQKLDGVSDRLVSR---FEGGILVEIELDNKTRFKIIKEKLKEFNLELRK- 187 (213)
T ss_dssp HHHHHHHHHHHHHHHH-TTCEEEEEESSCGGGCTTSCHHHHHH---HHTSEEEECCCCHHHHHHHHHHHHHHTTCCCCH-
T ss_pred hHHHHHHHHHHHHHhh-ccceEEEecCCcchhccccchHHHHH---hhCceEEEECCCcHHHHHHHHHHHHHcCCCCCH-
Confidence 4678889999988865 5888888888654222 223333 45666655444433 23444556666554
Q ss_pred CChHHHHHH
Q 006897 288 LNAIEFAME 296 (627)
Q Consensus 288 ~~~~d~~~~ 296 (627)
+..+|+.+
T Consensus 188 -~v~~yl~~ 195 (213)
T d1l8qa2 188 -EVIDYLLE 195 (213)
T ss_dssp -HHHHHHHH
T ss_pred -HHHHHHHH
Confidence 45555554
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=86.39 E-value=0.16 Score=48.60 Aligned_cols=23 Identities=26% Similarity=0.390 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
.+||||-.-+|||||++.|++--
T Consensus 4 ~~GivG~Pn~GKSTlf~~lt~~~ 26 (278)
T d1jala1 4 KCGIVGLPNVGKSTLFNALTKAG 26 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHTC
T ss_pred eEEEECCCCCCHHHHHHHHHCCC
Confidence 47999999999999999998653
|
| >d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Bacterial conjugative coupling protein TrwB species: Escherichia coli [TaxId: 562]
Probab=85.42 E-value=0.17 Score=51.17 Aligned_cols=20 Identities=55% Similarity=0.737 Sum_probs=17.1
Q ss_pred EEEEECCCCCcHHHHHHHHH
Q 006897 99 ILAVVGPSGTGKSSLLRIIS 118 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~ 118 (627)
-+.|+|++|||||++++.|.
T Consensus 52 H~~I~G~tGsGKT~~l~~li 71 (433)
T d1e9ra_ 52 HLLVNGATGTGKSVLLRELA 71 (433)
T ss_dssp CEEEEECTTSSHHHHHHHHH
T ss_pred eEEEEeCCCCcHHHHHHHHH
Confidence 48999999999999987543
|
| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=84.56 E-value=0.24 Score=45.01 Aligned_cols=24 Identities=21% Similarity=0.319 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGRVR 122 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl~~ 122 (627)
.+.+.||.|+||||+.+.++..+-
T Consensus 26 ~lLl~Gp~G~GKtt~a~~~a~~l~ 49 (207)
T d1a5ta2 26 ALLIQALPGMGDDALIYALSRYLL 49 (207)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHHHhcc
Confidence 478999999999999999987653
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=84.21 E-value=0.25 Score=45.86 Aligned_cols=23 Identities=26% Similarity=0.528 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
.+.|.||+|+||||+.++++..+
T Consensus 36 ~~Ll~Gp~G~GKtt~a~~~~~~l 58 (239)
T d1njfa_ 36 AYLFSGTRGVGKTSIARLLAKGL 58 (239)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHHh
Confidence 46788999999999999987554
|
| >d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=83.80 E-value=0.27 Score=46.79 Aligned_cols=24 Identities=29% Similarity=0.409 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGRVR 122 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl~~ 122 (627)
=+.|+||+|.|||++++-++.++.
T Consensus 41 n~lLVG~~GvGKTalv~~la~ri~ 64 (268)
T d1r6bx2 41 NPLLVGESGVGKTAIAEGLAWRIV 64 (268)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CcEEECCCCCcHHHHHHHHHHHHH
Confidence 457999999999999999987654
|
| >d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=83.47 E-value=0.29 Score=47.73 Aligned_cols=41 Identities=20% Similarity=0.431 Sum_probs=28.6
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCccC
Q 006897 96 DSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQI 138 (627)
Q Consensus 96 ~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~~ 138 (627)
|.-.+.++||+|+|||.|.+.|+-.+... ...-+.++....
T Consensus 52 p~~~~lf~Gp~G~GKt~lak~la~~l~~~--~~~~~~~~~~~~ 92 (315)
T d1qvra3 52 PIGSFLFLGPTGVGKTELAKTLAATLFDT--EEAMIRIDMTEY 92 (315)
T ss_dssp CSEEEEEBSCSSSSHHHHHHHHHHHHHSS--GGGEEEECTTTC
T ss_pred CceEEEEECCCcchHHHHHHHHHHHhcCC--CcceEEEecccc
Confidence 34467799999999999999998765321 124566665543
|
| >d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=83.43 E-value=0.3 Score=44.11 Aligned_cols=23 Identities=22% Similarity=0.537 Sum_probs=20.5
Q ss_pred EEEECCCCCcHHHHHHHHHcCCC
Q 006897 100 LAVVGPSGTGKSSLLRIISGRVR 122 (627)
Q Consensus 100 ~aIiGpnGsGKSTLl~~L~Gl~~ 122 (627)
..|+||+|.|||++..-|+.++.
T Consensus 46 ~lLvG~pGVGKTalv~~LA~ri~ 68 (195)
T d1jbka_ 46 PVLIGEPGVGKTAIVEGLAQRII 68 (195)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEecCCcccHHHHHHHHHHHH
Confidence 57999999999999999997664
|
| >d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Escherichia coli [TaxId: 562]
Probab=83.09 E-value=0.25 Score=47.81 Aligned_cols=20 Identities=35% Similarity=0.609 Sum_probs=17.8
Q ss_pred eCCeEEEEECCCCCcHHHHH
Q 006897 95 RDSEILAVVGPSGTGKSSLL 114 (627)
Q Consensus 95 ~~Ge~~aIiGpnGsGKSTLl 114 (627)
+.|++..+.|-||+|||||-
T Consensus 12 ~~~~~alfFGLSGTGKTTLs 31 (313)
T d2olra1 12 EKGDVAVFFGLSGTGKTTLS 31 (313)
T ss_dssp TTSCEEEEECSTTSSHHHHH
T ss_pred CCCCEEEEEccCCCCcccce
Confidence 46899999999999999975
|
| >d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Probab=83.02 E-value=0.29 Score=44.23 Aligned_cols=22 Identities=23% Similarity=0.419 Sum_probs=19.7
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 006897 100 LAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 100 ~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
+||+|.-++|||||++.|.+..
T Consensus 6 i~iiGHvd~GKSTL~~~l~~~~ 27 (196)
T d1d2ea3 6 VGTIGHVDHGKTTLTAAITKIL 27 (196)
T ss_dssp EEEESSTTSSHHHHHHHHHHHH
T ss_pred EEEEeCCCCcHHHHHHHHHHHH
Confidence 7999999999999999997643
|
| >d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpX species: Helicobacter pylori [TaxId: 210]
Probab=82.01 E-value=0.33 Score=48.28 Aligned_cols=27 Identities=22% Similarity=0.610 Sum_probs=21.9
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 006897 94 ARDSEILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 94 i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
++++. +.++||+|+|||-|.|.|+...
T Consensus 66 ~p~~n-iLfiGPTGvGKTElAk~LA~~~ 92 (364)
T d1um8a_ 66 LSKSN-ILLIGPTGSGKTLMAQTLAKHL 92 (364)
T ss_dssp CCCCC-EEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCcc-eeeeCCCCccHHHHHHHHHhhc
Confidence 34555 4578999999999999999765
|
| >d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Thermus thermophilus [TaxId: 274]
Probab=81.99 E-value=0.26 Score=47.86 Aligned_cols=19 Identities=37% Similarity=0.672 Sum_probs=17.1
Q ss_pred CCeEEEEECCCCCcHHHHH
Q 006897 96 DSEILAVVGPSGTGKSSLL 114 (627)
Q Consensus 96 ~Ge~~aIiGpnGsGKSTLl 114 (627)
.|++..+.|.||+|||||-
T Consensus 13 ~~~valffGLSGTGKTTLs 31 (318)
T d1j3ba1 13 EGDVAVFFGLSGTGKTTLS 31 (318)
T ss_dssp TCCEEEEEECTTSCHHHHT
T ss_pred CCCEEEEEccCCCCccccc
Confidence 5889999999999999974
|